locus-tag class description KW548_00020 PF04364 DNA polymerase III chi subunit, HolC KW548_00075 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KW548_00075 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KW548_00080 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain KW548_00080 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain KW548_00085 PF01042 Endoribonuclease L-PSP KW548_00095 PF00056 lactate/malate dehydrogenase, NAD binding domain KW548_00095 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KW548_00100 PF02863 Arginine repressor, C-terminal domain KW548_00100 PF01316 Arginine repressor, DNA binding domain KW548_00105 PF16868 NMT1-like family KW548_00130 PF06877 Regulator of ribonuclease activity B KW548_00140 PF01523 Putative modulator of DNA gyrase KW548_00145 PF00795 Carbon-nitrogen hydrolase KW548_00150 PF13116 Protein of unknown function KW548_00150 PF13502 AsmA-like C-terminal region KW548_00160 PF02545 Maf-like protein KW548_00165 PF04093 rod shape-determining protein MreD KW548_00170 PF04085 rod shape-determining protein MreC KW548_00210 PF07963 Prokaryotic N-terminal methylation motif KW548_00215 PF07963 Prokaryotic N-terminal methylation motif KW548_00225 PF00482 Type II secretion system (T2SS), protein F KW548_00240 PF01471 Putative peptidoglycan binding domain KW548_00240 PF13401 AAA domain KW548_00245 PF00263 Bacterial type II and III secretion system protein KW548_00245 PF03958 Bacterial type II/III secretion system short domain KW548_00270 PF00436 Single-strand binding protein family KW548_00280 PF00483 Nucleotidyl transferase KW548_00295 PF00266 Aminotransferase class-V KW548_00300 PF01842 ACT domain KW548_00300 PF00696 Amino acid kinase family KW548_00305 PF01523 Putative modulator of DNA gyrase KW548_00310 PF04751 Protein of unknown function (DUF615) KW548_00315 PF00005 ABC transporter KW548_00320 PF00528 Binding-protein-dependent transport system inner membrane component KW548_00330 PF02441 Flavoprotein KW548_00335 PF01225 Mur ligase family, catalytic domain KW548_00335 PF02875 Mur ligase family, glutamate ligase domain KW548_00335 PF08245 Mur ligase middle domain KW548_00340 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain KW548_00345 PF00719 Inorganic pyrophosphatase KW548_00350 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like KW548_00355 PF04357 TamB, inner membrane protein subunit of TAM complex KW548_00360 PF17243 POTRA domain TamA domain 1 KW548_00360 PF07244 Surface antigen variable number repeat KW548_00360 PF01103 Surface antigen KW548_00365 PF01625 Peptide methionine sulfoxide reductase KW548_00375 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) KW548_00380 PF10795 Protein of unknown function (DUF2607) KW548_00390 PF00005 ABC transporter KW548_00410 PF00342 Phosphoglucose isomerase KW548_00415 PF01894 Uncharacterised protein family UPF0047 KW548_00420 PF01168 Alanine racemase, N-terminal domain KW548_00420 PF00842 Alanine racemase, C-terminal domain KW548_00425 PF00772 DnaB-like helicase N terminal domain KW548_00425 PF03796 DnaB-like helicase C terminal domain KW548_00435 PF03948 Ribosomal protein L9, C-terminal domain KW548_00435 PF01281 Ribosomal protein L9, N-terminal domain KW548_00440 PF01084 Ribosomal protein S18 KW548_00445 PF01250 Ribosomal protein S6 KW548_00450 PF00210 Ferritin-like domain KW548_00455 PF04324 BFD-like [2Fe-2S] binding domain KW548_00460 PF00009 Elongation factor Tu GTP binding domain KW548_00460 PF03144 Elongation factor Tu domain 2 KW548_00460 PF03143 Elongation factor Tu C-terminal domain KW548_00465 PF00679 Elongation factor G C-terminus KW548_00465 PF14492 Elongation Factor G, domain II KW548_00465 PF03764 Elongation factor G, domain IV KW548_00465 PF03144 Elongation factor Tu domain 2 KW548_00465 PF00009 Elongation factor Tu GTP binding domain KW548_00470 PF00177 Ribosomal protein S7p/S5e KW548_00475 PF00164 Ribosomal protein S12/S23 KW548_00485 PF02635 DsrE/DsrF-like family KW548_00490 PF02635 DsrE/DsrF-like family KW548_00495 PF08348 YheO-like PAS domain KW548_00495 PF13309 HTH domain KW548_00500 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KW548_00500 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KW548_00510 PF04102 SlyX KW548_00515 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) KW548_00520 PF01145 SPFH domain / Band 7 family KW548_00525 PF12221 Bacterial membrane protein N terminal KW548_00525 PF01145 SPFH domain / Band 7 family KW548_00530 PF13167 GTP-binding GTPase N-terminal KW548_00530 PF16360 GTP-binding GTPase Middle Region KW548_00530 PF01926 50S ribosome-binding GTPase KW548_00535 PF17209 Hfq protein KW548_00545 PF08676 MutL C terminal dimerisation domain KW548_00545 PF01119 DNA mismatch repair protein, C-terminal domain KW548_00555 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE KW548_00560 PF08331 Domain of unknown function (DUF1730) KW548_00615 PF00929 Exonuclease KW548_00620 PF03193 RsgA GTPase KW548_00625 PF02666 Phosphatidylserine decarboxylase KW548_00635 PF00672 HAMP domain KW548_00635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW548_00645 PF06415 BPG-independent PGAM N-terminus (iPGM_N) KW548_00645 PF01676 Metalloenzyme superfamily KW548_00650 PF01551 Peptidase family M23 KW548_00660 PF08360 QacR-like protein, C-terminal region KW548_00660 PF00440 Bacterial regulatory proteins, tetR family KW548_00665 PF01208 Uroporphyrinogen decarboxylase (URO-D) KW548_00670 PF00293 NUDIX domain KW548_00670 PF09297 NADH pyrophosphatase zinc ribbon domain KW548_00675 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ KW548_00680 PF04983 RNA polymerase Rpb1, domain 3 KW548_00680 PF05000 RNA polymerase Rpb1, domain 4 KW548_00680 PF04998 RNA polymerase Rpb1, domain 5 KW548_00680 PF04997 RNA polymerase Rpb1, domain 1 KW548_00680 PF00623 RNA polymerase Rpb1, domain 2 KW548_00685 PF04565 RNA polymerase Rpb2, domain 3 KW548_00685 PF10385 RNA polymerase beta subunit external 1 domain KW548_00685 PF04560 RNA polymerase Rpb2, domain 7 KW548_00685 PF04563 RNA polymerase beta subunit KW548_00685 PF00562 RNA polymerase Rpb2, domain 6 KW548_00685 PF04561 RNA polymerase Rpb2, domain 2 KW548_00690 PF00542 Ribosomal protein L7/L12 C-terminal domain KW548_00690 PF16320 Ribosomal protein L7/L12 dimerisation domain KW548_00695 PF00466 Ribosomal protein L10 KW548_00700 PF00687 Ribosomal protein L1p/L10e family KW548_00705 PF00298 Ribosomal protein L11, RNA binding domain KW548_00705 PF03946 Ribosomal protein L11, N-terminal domain KW548_00710 PF00467 KOW motif KW548_00710 PF02357 Transcription termination factor nusG KW548_00715 PF00584 SecE/Sec61-gamma subunits of protein translocation complex KW548_00720 PF03144 Elongation factor Tu domain 2 KW548_00720 PF03143 Elongation factor Tu C-terminal domain KW548_00720 PF00009 Elongation factor Tu GTP binding domain KW548_00745 PF00485 Phosphoribulokinase / Uridine kinase family KW548_00775 PF01220 Dehydroquinase class II KW548_00780 PF00364 Biotin-requiring enzyme KW548_00785 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KW548_00785 PF00289 Biotin carboxylase, N-terminal domain KW548_00785 PF02785 Biotin carboxylase C-terminal domain KW548_00795 PF01207 Dihydrouridine synthase (Dus) KW548_00800 PF02954 Bacterial regulatory protein, Fis family KW548_00805 PF08448 PAS fold KW548_00805 PF00990 Diguanylate cyclase, GGDEF domain KW548_00810 PF13411 MerR HTH family regulatory protein KW548_00815 PF02142 MGS-like domain KW548_00815 PF01808 AICARFT/IMPCHase bienzyme KW548_00820 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KW548_00820 PF02843 Phosphoribosylglycinamide synthetase, C domain KW548_00820 PF02844 Phosphoribosylglycinamide synthetase, N domain KW548_00830 PF00216 Bacterial DNA-binding protein KW548_00835 PF00571 CBS domain KW548_00835 PF01595 Cyclin M transmembrane N-terminal domain KW548_00840 PF04222 Protein of unknown function (DUF416) KW548_00845 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KW548_00850 PF03167 Uracil DNA glycosylase superfamily KW548_00860 PF10400 Virulence activator alpha C-term KW548_00860 PF03551 Transcriptional regulator PadR-like family KW548_00865 PF06426 Serine acetyltransferase, N-terminal KW548_00865 PF00132 Bacterial transferase hexapeptide (six repeats) KW548_00870 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus KW548_00870 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KW548_00875 PF02556 Preprotein translocase subunit SecB KW548_00880 PF00581 Rhodanese-like domain KW548_00905 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF KW548_00915 PF06082 Exopolysaccharide biosynthesis protein YbjH KW548_00920 PF00152 tRNA synthetases class II (D, K and N) KW548_00925 PF02910 Fumarate reductase flavoprotein C-term KW548_00925 PF00890 FAD binding domain KW548_00930 PF13183 4Fe-4S dicluster domain KW548_00930 PF13085 2Fe-2S iron-sulfur cluster binding domain KW548_00935 PF02300 Fumarate reductase subunit C KW548_00940 PF02313 Fumarate reductase subunit D KW548_00950 PF00004 ATPase family associated with various cellular activities (AAA) KW548_00950 PF07724 AAA domain (Cdc48 subfamily) KW548_00955 PF00227 Proteasome subunit KW548_00960 PF05036 Sporulation related domain KW548_00965 PF00356 Bacterial regulatory proteins, lacI family KW548_00970 PF18319 PriA DNA helicase Cys-rich region (CRR) domain KW548_00970 PF18074 Primosomal protein N C-terminal domain KW548_00970 PF17764 3′ DNA-binding domain (3′BD) KW548_00970 PF00271 Helicase conserved C-terminal domain KW548_00970 PF00270 DEAD/DEAH box helicase KW548_00975 PF01197 Ribosomal protein L31 KW548_00980 PF03949 Malic enzyme, NAD binding domain KW548_00980 PF00390 Malic enzyme, N-terminal domain KW548_00990 PF01053 Cys/Met metabolism PLP-dependent enzyme KW548_01000 PF02219 Methylenetetrahydrofolate reductase KW548_01005 PF06005 Cell division protein ZapB KW548_01010 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded KW548_01020 PF01348 Type II intron maturase KW548_01020 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) KW548_01025 PF00118 TCP-1/cpn60 chaperonin family KW548_01030 PF00166 Chaperonin 10 Kd subunit KW548_01050 PF01565 FAD binding domain KW548_01050 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain KW548_01055 PF02237 Biotin protein ligase C terminal domain KW548_01055 PF08279 HTH domain KW548_01055 PF03099 Biotin/lipoate A/B protein ligase family KW548_01060 PF13091 PLD-like domain KW548_01065 PF02719 Polysaccharide biosynthesis protein KW548_01070 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family KW548_01075 PF01575 MaoC like domain KW548_01080 PF00132 Bacterial transferase hexapeptide (six repeats) KW548_01080 PF14602 Hexapeptide repeat of succinyl-transferase KW548_01080 PF17836 PglD N-terminal domain KW548_01085 PF02397 Bacterial sugar transferase KW548_01095 PF02350 UDP-N-acetylglucosamine 2-epimerase KW548_01100 PF01370 NAD dependent epimerase/dehydratase family KW548_01105 PF02719 Polysaccharide biosynthesis protein KW548_01105 PF08485 Polysaccharide biosynthesis protein C-terminal KW548_01115 PF00535 Glycosyl transferase family 2 KW548_01120 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family KW548_01125 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family KW548_01160 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family KW548_01165 PF12804 MobA-like NTP transferase domain KW548_01165 PF14602 Hexapeptide repeat of succinyl-transferase KW548_01165 PF00132 Bacterial transferase hexapeptide (six repeats) KW548_01170 PF05523 WxcM-like, C-terminal KW548_01175 PF00483 Nucleotidyl transferase KW548_01180 PF16363 GDP-mannose 4,6 dehydratase KW548_01185 PF02348 Cytidylyltransferase KW548_01195 PF00682 HMGL-like KW548_01195 PF07836 DmpG-like communication domain KW548_01200 PF01370 NAD dependent epimerase/dehydratase family KW548_01220 PF00132 Bacterial transferase hexapeptide (six repeats) KW548_01220 PF12464 Maltose acetyltransferase KW548_01220 PF14602 Hexapeptide repeat of succinyl-transferase KW548_01225 PF01075 Glycosyltransferase family 9 (heptosyltransferase) KW548_01235 PF04488 Glycosyltransferase sugar-binding region containing DXD motif KW548_01240 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) KW548_01275 PF01075 Glycosyltransferase family 9 (heptosyltransferase) KW548_01280 PF00535 Glycosyl transferase family 2 KW548_01285 PF01075 Glycosyltransferase family 9 (heptosyltransferase) KW548_01290 PF01467 Cytidylyltransferase-like KW548_01295 PF06827 Zinc finger found in FPG and IleRS KW548_01295 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain KW548_01295 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain KW548_01305 PF00471 Ribosomal protein L33 KW548_01310 PF00830 Ribosomal L28 family KW548_01320 PF02441 Flavoprotein KW548_01320 PF04127 DNA / pantothenate metabolism flavoprotein KW548_01325 PF00440 Bacterial regulatory proteins, tetR family KW548_01330 PF03279 Bacterial lipid A biosynthesis acyltransferase KW548_01340 PF00156 Phosphoribosyl transferase domain KW548_01345 PF03725 3' exoribonuclease family, domain 2 KW548_01345 PF01138 3' exoribonuclease family, domain 1 KW548_01350 PF08340 Domain of unknown function (DUF1732) KW548_01350 PF03755 YicC-like family, N-terminal region KW548_01425 PF00860 Permease family KW548_01435 PF02472 Biopolymer transport protein ExbD/TolR KW548_01440 PF01618 MotA/TolQ/ExbB proton channel family KW548_01465 PF08281 Sigma-70, region 4 KW548_01465 PF04542 Sigma-70 region 2 KW548_01470 PF00625 Guanylate kinase KW548_01475 PF01192 RNA polymerase Rpb6 KW548_01480 PF13291 ACT domain KW548_01480 PF04607 Region found in RelA / SpoT proteins KW548_01480 PF02824 TGS domain KW548_01485 PF00588 SpoU rRNA Methylase family KW548_01485 PF12105 SpoU, rRNA methylase, C-terminal KW548_01500 PF00293 NUDIX domain KW548_01505 PF01106 NifU-like domain KW548_01505 PF01521 Iron-sulphur cluster biosynthesis KW548_01510 PF00156 Phosphoribosyl transferase domain KW548_01515 PF00561 alpha/beta hydrolase fold KW548_01525 PF16921 Tex protein YqgF-like domain KW548_01525 PF09371 Tex-like protein N-terminal domain KW548_01525 PF00575 S1 RNA binding domain KW548_01525 PF17674 HHH domain KW548_01540 PF00072 Response regulator receiver domain KW548_01540 PF00486 Transcriptional regulatory protein, C terminal KW548_01555 PF04612 Type II secretion system (T2SS), protein M KW548_01560 PF12693 GspL periplasmic domain KW548_01560 PF05134 Type II secretion system (T2SS), protein L KW548_01565 PF03934 Type II secretion system (T2SS), protein K KW548_01570 PF11612 Type II secretion system (T2SS), protein J KW548_01570 PF07963 Prokaryotic N-terminal methylation motif KW548_01575 PF02501 Type II secretion system (T2SS), protein I KW548_01575 PF07963 Prokaryotic N-terminal methylation motif KW548_01580 PF12019 Type II transport protein GspH KW548_01585 PF08334 Type II secretion system (T2SS), protein G KW548_01585 PF07963 Prokaryotic N-terminal methylation motif KW548_01590 PF00482 Type II secretion system (T2SS), protein F KW548_01595 PF00437 Type II/IV secretion system protein KW548_01600 PF03958 Bacterial type II/III secretion system short domain KW548_01600 PF00263 Bacterial type II and III secretion system protein KW548_01605 PF11356 Type II secretion system protein C KW548_01610 PF01479 S4 domain KW548_01615 PF01430 Hsp33 protein KW548_01620 PF01293 Phosphoenolpyruvate carboxykinase KW548_01630 PF09500 Putative thioesterase (yiiD_Cterm) KW548_01630 PF00583 Acetyltransferase (GNAT) family KW548_01635 PF02580 D-Tyr-tRNA(Tyr) deacylase KW548_01640 PF03631 Virulence factor BrkB KW548_01650 PF00679 Elongation factor G C-terminus KW548_01650 PF00009 Elongation factor Tu GTP binding domain KW548_01650 PF03144 Elongation factor Tu domain 2 KW548_01655 PF00120 Glutamine synthetase, catalytic domain KW548_01655 PF03951 Glutamine synthetase, beta-Grasp domain KW548_01665 PF00158 Sigma-54 interaction domain KW548_01665 PF02954 Bacterial regulatory protein, Fis family KW548_01665 PF00072 Response regulator receiver domain KW548_01670 PF13188 PAS domain KW548_01670 PF00563 EAL domain KW548_01670 PF00990 Diguanylate cyclase, GGDEF domain KW548_01670 PF03707 Bacterial signalling protein N terminal repeat KW548_01675 PF00962 Adenosine/AMP deaminase KW548_01715 PF00132 Bacterial transferase hexapeptide (six repeats) KW548_01720 PF07369 Protein of unknown function (DUF1488) KW548_01725 PF08501 Shikimate dehydrogenase substrate binding domain KW548_01725 PF01488 Shikimate / quinate 5-dehydrogenase KW548_01725 PF18317 Shikimate 5'-dehydrogenase C-terminal domain KW548_01730 PF01218 Coproporphyrinogen III oxidase KW548_01735 PF01300 Telomere recombination KW548_01740 PF00731 AIR carboxylase KW548_01745 PF02222 ATP-grasp domain KW548_01745 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain KW548_01750 PF01396 Topoisomerase DNA binding C4 zinc finger KW548_01755 PF04361 Protein of unknown function (DUF494) KW548_01765 PF01327 Polypeptide deformylase KW548_01770 PF02911 Formyl transferase, C-terminal domain KW548_01770 PF00551 Formyl transferase KW548_01775 PF01189 16S rRNA methyltransferase RsmB/F KW548_01775 PF01029 NusB family KW548_01780 PF02080 TrkA-C domain KW548_01780 PF02254 TrkA-N domain KW548_01785 PF02386 Cation transport protein KW548_01795 PF03006 Haemolysin-III related KW548_01800 PF07070 SpoOM protein KW548_01815 PF13746 4Fe-4S dicluster domain KW548_01815 PF12801 4Fe-4S binding domain KW548_01815 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase KW548_01840 PF01636 Phosphotransferase enzyme family KW548_01845 PF01323 DSBA-like thioredoxin domain KW548_01850 PF01553 Acyltransferase KW548_01865 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KW548_01865 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KW548_01865 PF00205 Thiamine pyrophosphate enzyme, central domain KW548_01875 PF01063 Amino-transferase class IV KW548_01880 PF00920 Dehydratase family KW548_01885 PF00291 Pyridoxal-phosphate dependent enzyme KW548_01885 PF00585 C-terminal regulatory domain of Threonine dehydratase KW548_01895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_01895 PF03466 LysR substrate binding domain KW548_01905 PF01206 Sulfurtransferase TusA KW548_01915 PF01169 Uncharacterized protein family UPF0016 KW548_01920 PF02091 Glycyl-tRNA synthetase alpha subunit KW548_01925 PF02092 Glycyl-tRNA synthetase beta subunit KW548_01925 PF05746 DALR anticodon binding domain KW548_01930 PF00155 Aminotransferase class I and II KW548_01935 PF00011 Hsp20/alpha crystallin family KW548_01945 PF02463 RecF/RecN/SMC N terminal domain KW548_01950 PF00712 DNA polymerase III beta subunit, N-terminal domain KW548_01950 PF02767 DNA polymerase III beta subunit, central domain KW548_01950 PF02768 DNA polymerase III beta subunit, C-terminal domain KW548_01955 PF00308 Bacterial dnaA protein KW548_01955 PF08299 Bacterial dnaA protein helix-turn-helix KW548_01955 PF11638 DnaA N-terminal domain KW548_01960 PF00497 Bacterial extracellular solute-binding proteins, family 3 KW548_01965 PF00528 Binding-protein-dependent transport system inner membrane component KW548_01970 PF00005 ABC transporter KW548_01975 PF00468 Ribosomal protein L34 KW548_01980 PF00825 Ribonuclease P KW548_01985 PF01809 Putative membrane protein insertion efficiency factor KW548_01995 PF01926 50S ribosome-binding GTPase KW548_01995 PF12631 MnmE helical domain KW548_01995 PF10396 GTP-binding protein TrmE N-terminus KW548_02000 PF00258 Flavodoxin KW548_02010 PF02527 rRNA small subunit methyltransferase G KW548_02015 PF13614 AAA domain KW548_02020 PF02195 ParB-like nuclease domain KW548_02020 PF17762 HTH domain found in ParB protein KW548_02025 PF03899 ATP synthase I chain KW548_02035 PF00137 ATP synthase subunit C KW548_02040 PF00430 ATP synthase B/B' CF(0) KW548_02045 PF00213 ATP synthase delta (OSCP) subunit KW548_02050 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KW548_02050 PF00306 ATP synthase alpha/beta chain, C terminal domain KW548_02050 PF02874 ATP synthase alpha/beta family, beta-barrel domain KW548_02055 PF00231 ATP synthase KW548_02060 PF02874 ATP synthase alpha/beta family, beta-barrel domain KW548_02060 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KW548_02065 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain KW548_02065 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain KW548_02070 PF00132 Bacterial transferase hexapeptide (six repeats) KW548_02070 PF12804 MobA-like NTP transferase domain KW548_02075 PF00528 Binding-protein-dependent transport system inner membrane component KW548_02090 PF03466 LysR substrate binding domain KW548_02090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_02095 PF00108 Thiolase, N-terminal domain KW548_02095 PF02803 Thiolase, C-terminal domain KW548_02100 PF00378 Enoyl-CoA hydratase/isomerase KW548_02100 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KW548_02100 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KW548_02110 PF02386 Cation transport protein KW548_02115 PF12724 Flavodoxin domain KW548_02170 PF02537 CrcB-like protein, Camphor Resistance (CrcB) KW548_02180 PF02581 Thiamine monophosphate synthase KW548_02185 PF00899 ThiF family KW548_02195 PF05690 Thiazole biosynthesis protein ThiG KW548_02200 PF04055 Radical SAM superfamily KW548_02200 PF06968 Biotin and Thiamin Synthesis associated domain KW548_02205 PF00557 Metallopeptidase family M24 KW548_02205 PF01321 Creatinase/Prolidase N-terminal domain KW548_02205 PF00557 Metallopeptidase family M24 KW548_02205 PF01321 Creatinase/Prolidase N-terminal domain KW548_02210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_02210 PF03466 LysR substrate binding domain KW548_02215 PF07690 Major Facilitator Superfamily KW548_02225 PF01037 Lrp/AsnC ligand binding domain KW548_02230 PF00563 EAL domain KW548_02230 PF00990 Diguanylate cyclase, GGDEF domain KW548_02230 PF08448 PAS fold KW548_02235 PF04445 Putative SAM-dependent methyltransferase KW548_02245 PF00892 EamA-like transporter family KW548_02250 PF00582 Universal stress protein family KW548_02255 PF00210 Ferritin-like domain KW548_02260 PF10625 Universal stress protein B (UspB) KW548_02270 PF01117 Aerolysin toxin KW548_02270 PF03440 Aerolysin/Pertussis toxin (APT) domain KW548_02290 PF08668 HDOD domain KW548_02300 PF02646 RmuC family KW548_02305 PF01209 ubiE/COQ5 methyltransferase family KW548_02310 PF02036 SCP-2 sterol transfer family KW548_02315 PF03109 ABC1 family KW548_02325 PF02416 mttA/Hcf106 family KW548_02330 PF00902 Sec-independent protein translocase protein (TatC) KW548_02335 PF01026 TatD related DNase KW548_02340 PF00490 Delta-aminolevulinic acid dehydratase KW548_02355 PF01926 50S ribosome-binding GTPase KW548_02360 PF00034 Cytochrome c KW548_02375 PF10675 Protein of unknown function (DUF2489) KW548_02380 PF06969 HemN C-terminal domain KW548_02380 PF04055 Radical SAM superfamily KW548_02385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_02385 PF03466 LysR substrate binding domain KW548_02390 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain KW548_02390 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain KW548_02395 PF04380 Membrane fusogenic activity KW548_02405 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KW548_02410 PF00440 Bacterial regulatory proteins, tetR family KW548_02415 PF13361 UvrD-like helicase C-terminal domain KW548_02415 PF00580 UvrD/REP helicase N-terminal domain KW548_02420 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KW548_02450 PF00005 ABC transporter KW548_02450 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KW548_02455 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KW548_02460 PF00528 Binding-protein-dependent transport system inner membrane component KW548_02465 PF12911 N-terminal TM domain of oligopeptide transport permease C KW548_02465 PF00528 Binding-protein-dependent transport system inner membrane component KW548_02480 PF00072 Response regulator receiver domain KW548_02480 PF00486 Transcriptional regulatory protein, C terminal KW548_02495 PF00083 Sugar (and other) transporter KW548_02510 PF07992 Pyridine nucleotide-disulphide oxidoreductase KW548_02510 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KW548_02520 PF01432 Peptidase family M3 KW548_02535 PF05114 Protein of unknown function (DUF692) KW548_02545 PF13361 UvrD-like helicase C-terminal domain KW548_02545 PF00580 UvrD/REP helicase N-terminal domain KW548_02555 PF01810 LysE type translocator KW548_02565 PF00892 EamA-like transporter family KW548_02570 PF00270 DEAD/DEAH box helicase KW548_02570 PF00271 Helicase conserved C-terminal domain KW548_02570 PF16124 RecQ zinc-binding KW548_02570 PF09382 RQC domain KW548_02570 PF00570 HRDC domain KW548_02580 PF02592 Putative vitamin uptake transporter KW548_02585 PF02541 Ppx/GppA phosphatase family KW548_02595 PF00085 Thioredoxin KW548_02600 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KW548_02600 PF07498 Rho termination factor, N-terminal domain KW548_02600 PF07497 Rho termination factor, RNA-binding domain KW548_02610 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase KW548_02615 PF00175 Oxidoreductase NAD-binding domain KW548_02615 PF00970 Oxidoreductase FAD-binding domain KW548_02615 PF00111 2Fe-2S iron-sulfur cluster binding domain KW548_02620 PF00175 Oxidoreductase NAD-binding domain KW548_02675 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase KW548_02680 PF02602 Uroporphyrinogen-III synthase HemD KW548_02685 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain KW548_02685 PF03900 Porphobilinogen deaminase, C-terminal domain KW548_02690 PF12633 Adenylate cyclase NT domain KW548_02690 PF01295 Adenylate cyclase, class-I KW548_02695 PF01491 Frataxin-like domain KW548_02705 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain KW548_02705 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain KW548_02710 PF01678 Diaminopimelate epimerase KW548_02720 PF00589 Phage integrase family KW548_02720 PF02899 Phage integrase, N-terminal SAM-like domain KW548_02725 PF13419 Haloacid dehalogenase-like hydrolase KW548_02730 PF03942 DTW domain KW548_02755 PF01810 LysE type translocator KW548_02760 PF00563 EAL domain KW548_02760 PF08668 HDOD domain KW548_02765 PF01022 Bacterial regulatory protein, arsR family KW548_02770 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KW548_02770 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KW548_02815 PF01914 MarC family integral membrane protein KW548_02830 PF00448 SRP54-type protein, GTPase domain KW548_02830 PF02881 SRP54-type protein, helical bundle domain KW548_02840 PF18075 FtsX extracellular domain KW548_02845 PF04542 Sigma-70 region 2 KW548_02845 PF00140 Sigma-70 factor, region 1.2 KW548_02845 PF04545 Sigma-70, region 4 KW548_02850 PF00581 Rhodanese-like domain KW548_02855 PF01694 Rhomboid family KW548_02855 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease KW548_02860 PF03748 Flagellar basal body-associated protein FliL KW548_02865 PF04345 Chorismate lyase KW548_02870 PF01040 UbiA prenyltransferase family KW548_02875 PF01553 Acyltransferase KW548_02880 PF01219 Prokaryotic diacylglycerol kinase KW548_02885 PF01726 LexA DNA binding domain KW548_02885 PF00717 Peptidase S24-like KW548_02895 PF01554 MatE KW548_02900 PF07992 Pyridine nucleotide-disulphide oxidoreductase KW548_02900 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KW548_02905 PF00440 Bacterial regulatory proteins, tetR family KW548_02915 PF05958 tRNA (Uracil-5-)-methyltransferase KW548_02920 PF07715 TonB-dependent Receptor Plug Domain KW548_02920 PF00593 TonB dependent receptor KW548_02930 PF01177 Asp/Glu/Hydantoin racemase KW548_03015 PF07687 Peptidase dimerisation domain KW548_03015 PF01546 Peptidase family M20/M25/M40 KW548_03020 PF01118 Semialdehyde dehydrogenase, NAD binding domain KW548_03020 PF02774 Semialdehyde dehydrogenase, dimerisation domain KW548_03025 PF00696 Amino acid kinase family KW548_03030 PF00764 Arginosuccinate synthase KW548_03045 PF01042 Endoribonuclease L-PSP KW548_03050 PF07992 Pyridine nucleotide-disulphide oxidoreductase KW548_03050 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KW548_03055 PF00462 Glutaredoxin KW548_03055 PF08534 Redoxin KW548_03060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_03060 PF03466 LysR substrate binding domain KW548_03065 PF00912 Transglycosylase KW548_03065 PF17092 Penicillin-binding protein OB-like domain KW548_03065 PF00905 Penicillin binding protein transpeptidase domain KW548_03090 PF11741 AMIN domain KW548_03090 PF00263 Bacterial type II and III secretion system protein KW548_03090 PF03958 Bacterial type II/III secretion system short domain KW548_03090 PF07660 Secretin and TonB N terminus short domain KW548_03095 PF01202 Shikimate kinase KW548_03100 PF01761 3-dehydroquinate synthase KW548_03110 PF02086 D12 class N6 adenine-specific DNA methyltransferase KW548_03115 PF00834 Ribulose-phosphate 3 epimerase family KW548_03120 PF13419 Haloacid dehalogenase-like hydrolase KW548_03125 PF00579 tRNA synthetases class I (W and Y) KW548_03130 PF00588 SpoU rRNA Methylase family KW548_03135 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KW548_03135 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KW548_03140 PF16527 Two-component sensor protein CpxA, periplasmic domain KW548_03140 PF00512 His Kinase A (phospho-acceptor) domain KW548_03140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW548_03140 PF00672 HAMP domain KW548_03145 PF00486 Transcriptional regulatory protein, C terminal KW548_03145 PF00072 Response regulator receiver domain KW548_03150 PF07813 LTXXQ motif family protein KW548_03155 PF01545 Cation efflux family KW548_03155 PF16916 Dimerisation domain of Zinc Transporter KW548_03165 PF02308 MgtC family KW548_03170 PF04055 Radical SAM superfamily KW548_03175 PF01132 Elongation factor P (EF-P) OB domain KW548_03175 PF08207 Elongation factor P (EF-P) KOW-like domain KW548_03175 PF09285 Elongation factor P, C-terminal KW548_03180 PF01040 UbiA prenyltransferase family KW548_03185 PF03737 Aldolase/RraA KW548_03190 PF01554 MatE KW548_03195 PF00121 Triosephosphate isomerase KW548_03215 PF00474 Sodium:solute symporter family KW548_03225 PF01914 MarC family integral membrane protein KW548_03230 PF00072 Response regulator receiver domain KW548_03230 PF00196 Bacterial regulatory proteins, luxR family KW548_03235 PF02683 Cytochrome C biogenesis protein transmembrane region KW548_03235 PF11412 Disulphide bond corrector protein DsbC KW548_03240 PF02863 Arginine repressor, C-terminal domain KW548_03240 PF01316 Arginine repressor, DNA binding domain KW548_03245 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain KW548_03245 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain KW548_03250 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KW548_03250 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KW548_03255 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KW548_03255 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KW548_03260 PF00696 Amino acid kinase family KW548_03275 PF03605 Anaerobic c4-dicarboxylate membrane transporter KW548_03280 PF10415 Fumarase C C-terminus KW548_03280 PF00206 Lyase KW548_03285 PF04186 FxsA cytoplasmic membrane protein KW548_03330 PF16671 Actin cross-linking domain KW548_03330 PF04717 Type VI secretion system, phage-baseplate injector KW548_03350 PF03781 Sulfatase-modifying factor enzyme 1 KW548_03365 PF00117 Glutamine amidotransferase class-I KW548_03370 PF00202 Aminotransferase class-III KW548_03375 PF04958 Arginine N-succinyltransferase beta subunit KW548_03380 PF00171 Aldehyde dehydrogenase family KW548_03390 PF00027 Cyclic nucleotide-binding domain KW548_03390 PF13545 Crp-like helix-turn-helix domain KW548_03395 PF00485 Phosphoribulokinase / Uridine kinase family KW548_03400 PF06794 Uncharacterised protein family (UPF0270) KW548_03405 PF00561 alpha/beta hydrolase fold KW548_03415 PF00005 ABC transporter KW548_03415 PF12848 ABC transporter KW548_03420 PF02525 Flavodoxin-like fold KW548_03425 PF00999 Sodium/hydrogen exchanger family KW548_03425 PF02254 TrkA-N domain KW548_03435 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KW548_03445 PF00709 Adenylosuccinate synthetase KW548_03450 PF08238 Sel1 repeat KW548_03455 PF00575 S1 RNA binding domain KW548_03455 PF08461 Ribonuclease R winged-helix domain KW548_03455 PF17876 Cold shock domain KW548_03455 PF08206 Ribonuclease B OB domain KW548_03455 PF00773 RNB domain KW548_03460 PF00588 SpoU rRNA Methylase family KW548_03460 PF08032 RNA 2'-O ribose methyltransferase substrate binding KW548_03465 PF00338 Ribosomal protein S10p/S20e KW548_03470 PF00297 Ribosomal protein L3 KW548_03475 PF00573 Ribosomal protein L4/L1 family KW548_03480 PF00276 Ribosomal protein L23 KW548_03485 PF00181 Ribosomal Proteins L2, RNA binding domain KW548_03485 PF03947 Ribosomal Proteins L2, C-terminal domain KW548_03490 PF00203 Ribosomal protein S19 KW548_03495 PF00237 Ribosomal protein L22p/L17e KW548_03500 PF00189 Ribosomal protein S3, C-terminal domain KW548_03500 PF07650 KH domain KW548_03505 PF00252 Ribosomal protein L16p/L10e KW548_03515 PF00366 Ribosomal protein S17 KW548_03520 PF00238 Ribosomal protein L14p/L23e KW548_03525 PF00467 KOW motif KW548_03525 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 KW548_03530 PF00281 Ribosomal protein L5 KW548_03530 PF00673 ribosomal L5P family C-terminus KW548_03535 PF00253 Ribosomal protein S14p/S29e KW548_03540 PF00410 Ribosomal protein S8 KW548_03545 PF00347 Ribosomal protein L6 KW548_03550 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast KW548_03555 PF03719 Ribosomal protein S5, C-terminal domain KW548_03555 PF00333 Ribosomal protein S5, N-terminal domain KW548_03560 PF00327 Ribosomal protein L30p/L7e KW548_03565 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A KW548_03570 PF00344 SecY translocase KW548_03580 PF00416 Ribosomal protein S13/S18 KW548_03585 PF00411 Ribosomal protein S11 KW548_03590 PF00163 Ribosomal protein S4/S9 N-terminal domain KW548_03590 PF01479 S4 domain KW548_03595 PF01000 RNA polymerase Rpb3/RpoA insert domain KW548_03595 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain KW548_03595 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain KW548_03600 PF01196 Ribosomal protein L17 KW548_03605 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KW548_03605 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KW548_03620 PF13673 Acetyltransferase (GNAT) domain KW548_03630 PF02872 5'-nucleotidase, C-terminal domain KW548_03630 PF00149 Calcineurin-like phosphoesterase KW548_03635 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KW548_03635 PF14824 Sirohaem biosynthesis protein central KW548_03635 PF10414 Sirohaem synthase dimerisation region KW548_03640 PF01507 Phosphoadenosine phosphosulfate reductase family KW548_03645 PF00009 Elongation factor Tu GTP binding domain KW548_03650 PF03600 Citrate transporter KW548_03650 PF02080 TrkA-C domain KW548_03665 PF01475 Ferric uptake regulator family KW548_03670 PF00072 Response regulator receiver domain KW548_03670 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KW548_03670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW548_03670 PF00672 HAMP domain KW548_03670 PF01627 Hpt domain KW548_03670 PF00512 His Kinase A (phospho-acceptor) domain KW548_03675 PF00072 Response regulator receiver domain KW548_03705 PF00667 FAD binding domain KW548_03705 PF00175 Oxidoreductase NAD-binding domain KW548_03705 PF00258 Flavodoxin KW548_03710 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KW548_03710 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KW548_03715 PF01507 Phosphoadenosine phosphosulfate reductase family KW548_03770 PF00999 Sodium/hydrogen exchanger family KW548_03780 PF00571 CBS domain KW548_03780 PF01769 Divalent cation transporter KW548_03780 PF03448 MgtE intracellular N domain KW548_03785 PF00381 PTS HPr component phosphorylation site KW548_03790 PF03668 P-loop ATPase protein family KW548_03795 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KW548_03800 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein KW548_03805 PF04552 Sigma-54, DNA binding domain KW548_03805 PF00309 Sigma-54 factor, Activator interacting domain (AID) KW548_03805 PF04963 Sigma-54 factor, core binding domain KW548_03810 PF12399 Branched-chain amino acid ATP-binding cassette transporter KW548_03810 PF00005 ABC transporter KW548_03815 PF03968 OstA-like protein KW548_03830 PF00571 CBS domain KW548_03830 PF01380 SIS domain KW548_03840 PF00005 ABC transporter KW548_03845 PF02405 Permease MlaE KW548_03850 PF02470 MlaD protein KW548_03855 PF05494 MlaC protein KW548_03865 PF01722 BolA-like protein KW548_03870 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KW548_03875 PF01553 Acyltransferase KW548_03925 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain KW548_03925 PF01464 Transglycosylase SLT domain KW548_03930 PF04362 Bacterial Fe(2+) trafficking KW548_03935 PF00730 HhH-GPD superfamily base excision DNA repair protein KW548_03935 PF00633 Helix-hairpin-helix motif KW548_03935 PF14815 NUDIX domain KW548_03940 PF02390 Putative methyltransferase KW548_03945 PF04960 Glutaminase KW548_03955 PF01725 Ham1 family KW548_03970 PF02594 Uncharacterised ACR, YggU family COG1872 KW548_03975 PF02325 YGGT family KW548_03980 PF14748 Pyrroline-5-carboxylate reductase dimerisation KW548_03980 PF03807 NADP oxidoreductase coenzyme F420-dependent KW548_03985 PF01168 Alanine racemase, N-terminal domain KW548_03990 PF00437 Type II/IV secretion system protein KW548_03995 PF00437 Type II/IV secretion system protein KW548_04000 PF03652 Holliday junction resolvase KW548_04005 PF02622 Uncharacterized ACR, COG1678 KW548_04010 PF02951 Prokaryotic glutathione synthetase, N-terminal domain KW548_04010 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain KW548_04015 PF04452 RNA methyltransferase KW548_04025 PF17283 SprT-like zinc ribbon domain KW548_04025 PF10263 SprT-like family KW548_04035 PF00438 S-adenosylmethionine synthetase, N-terminal domain KW548_04035 PF02773 S-adenosylmethionine synthetase, C-terminal domain KW548_04035 PF02772 S-adenosylmethionine synthetase, central domain KW548_04040 PF00456 Transketolase, thiamine diphosphate binding domain KW548_04040 PF02780 Transketolase, C-terminal domain KW548_04040 PF02779 Transketolase, pyrimidine binding domain KW548_04045 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KW548_04045 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KW548_04050 PF00162 Phosphoglycerate kinase KW548_04055 PF01116 Fructose-bisphosphate aldolase class-II KW548_04060 PF05552 Conserved TM helix KW548_04060 PF00924 Mechanosensitive ion channel KW548_04070 PF01810 LysE type translocator KW548_04075 PF03466 LysR substrate binding domain KW548_04075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_04080 PF04402 Protein of unknown function (DUF541) KW548_04090 PF00224 Pyruvate kinase, barrel domain KW548_04090 PF02887 Pyruvate kinase, alpha/beta domain KW548_04095 PF00455 DeoR C terminal sensor domain KW548_04095 PF08220 DeoR-like helix-turn-helix domain KW548_04100 PF01380 SIS domain KW548_04105 PF13419 Haloacid dehalogenase-like hydrolase KW548_04110 PF05068 Mannitol repressor KW548_04115 PF03480 Bacterial extracellular solute-binding protein, family 7 KW548_04125 PF00348 Polyprenyl synthetase KW548_04130 PF00829 Ribosomal prokaryotic L21 protein KW548_04135 PF01016 Ribosomal L27 protein KW548_04145 PF06738 Putative threonine/serine exporter KW548_04150 PF12821 Threonine/Serine exporter, ThrE KW548_04155 PF00186 Dihydrofolate reductase KW548_04165 PF04379 ApaG domain KW548_04170 PF00398 Ribosomal RNA adenine dimethylase KW548_04175 PF04166 Pyridoxal phosphate biosynthetic protein PdxA KW548_04180 PF09312 SurA N-terminal domain KW548_04185 PF04453 LPS transport system D KW548_04185 PF03968 OstA-like protein KW548_04190 PF00226 DnaJ domain KW548_04190 PF05099 Tellurite resistance protein TerB KW548_04205 PF04542 Sigma-70 region 2 KW548_04205 PF04545 Sigma-70, region 4 KW548_04205 PF04546 Sigma-70, non-essential region KW548_04205 PF03979 Sigma-70 factor, region 1.1 KW548_04205 PF00140 Sigma-70 factor, region 1.2 KW548_04205 PF04539 Sigma-70 region 3 KW548_04210 PF10410 DnaB-helicase binding domain of primase KW548_04210 PF01807 CHC2 zinc finger KW548_04210 PF08275 DNA primase catalytic core, N-terminal domain KW548_04210 PF08278 DNA primase DnaG DnaB-binding KW548_04215 PF09424 Yqey-like protein KW548_04220 PF01165 Ribosomal protein S21 KW548_04225 PF00814 Glycoprotease family KW548_04235 PF02660 Glycerol-3-phosphate acyltransferase KW548_04240 PF02152 Dihydroneopterin aldolase KW548_04245 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) KW548_04250 PF02673 Bacitracin resistance protein BacA KW548_04255 PF04977 Septum formation initiator KW548_04260 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase KW548_04265 PF02542 YgbB family KW548_04270 PF01142 tRNA pseudouridine synthase D (TruD) KW548_04275 PF01975 Survival protein SurE KW548_04285 PF01476 LysM domain KW548_04285 PF01551 Peptidase family M23 KW548_04290 PF04539 Sigma-70 region 3 KW548_04290 PF04542 Sigma-70 region 2 KW548_04290 PF00140 Sigma-70 factor, region 1.2 KW548_04290 PF04545 Sigma-70, region 4 KW548_04295 PF03471 Transporter associated domain KW548_04295 PF01595 Cyclin M transmembrane N-terminal domain KW548_04295 PF00571 CBS domain KW548_04305 PF00448 SRP54-type protein, GTPase domain KW548_04305 PF02881 SRP54-type protein, helical bundle domain KW548_04305 PF02978 Signal peptide binding domain KW548_04310 PF00886 Ribosomal protein S16 KW548_04315 PF01782 RimM N-terminal domain KW548_04315 PF05239 PRC-barrel domain KW548_04320 PF01746 tRNA (Guanine-1)-methyltransferase KW548_04325 PF01245 Ribosomal protein L19 KW548_04330 PF03884 DNA gyrase inhibitor YacG KW548_04335 PF07072 Cell division protein KW548_04340 PF01121 Dephospho-CoA kinase KW548_04345 PF01478 Type IV leader peptidase family KW548_04345 PF06750 Bacterial Peptidase A24 N-terminal domain KW548_04350 PF00482 Type II secretion system (T2SS), protein F KW548_04360 PF07963 Prokaryotic N-terminal methylation motif KW548_04360 PF00114 Pilin (bacterial filament) KW548_04365 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain KW548_04365 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain KW548_04370 PF01510 N-acetylmuramoyl-L-alanine amidase KW548_04375 PF00258 Flavodoxin KW548_04385 PF10411 Disulfide bond isomerase protein N-terminus KW548_04385 PF13098 Thioredoxin-like domain KW548_04390 PF01368 DHH family KW548_04390 PF02272 DHHA1 domain KW548_04390 PF17768 RecJ OB domain KW548_04395 PF07729 FCD domain KW548_04395 PF00392 Bacterial regulatory proteins, gntR family KW548_04400 PF17831 Pyruvate dehydrogenase E1 component middle domain KW548_04400 PF00456 Transketolase, thiamine diphosphate binding domain KW548_04405 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KW548_04405 PF00364 Biotin-requiring enzyme KW548_04405 PF02817 e3 binding domain KW548_04410 PF07992 Pyridine nucleotide-disulphide oxidoreductase KW548_04410 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KW548_04415 PF00440 Bacterial regulatory proteins, tetR family KW548_04420 PF00156 Phosphoribosyl transferase domain KW548_04425 PF00484 Carbonic anhydrase KW548_04430 PF00916 Sulfate permease family KW548_04430 PF01740 STAS domain KW548_04440 PF01061 ABC-2 type transporter KW548_04445 PF02569 Pantoate-beta-alanine ligase KW548_04450 PF02548 Ketopantoate hydroxymethyltransferase KW548_04455 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) KW548_04460 PF01743 Poly A polymerase head domain KW548_04460 PF12627 Probable RNA and SrmB- binding site of polymerase A KW548_04460 PF12626 Polymerase A arginine-rich C-terminus KW548_04465 PF00749 tRNA synthetases class I (E and Q), catalytic domain KW548_04470 PF01258 Prokaryotic dksA/traR C4-type zinc finger KW548_04475 PF17746 SfsA N-terminal OB domain KW548_04475 PF03749 Sugar fermentation stimulation protein RE domain KW548_04480 PF08482 ATP-dependent helicase C-terminal KW548_04480 PF00270 DEAD/DEAH box helicase KW548_04480 PF04408 Helicase associated domain (HA2) KW548_04480 PF00271 Helicase conserved C-terminal domain KW548_04495 PF00330 Aconitase family (aconitate hydratase) KW548_04495 PF06434 Aconitate hydratase 2 N-terminus KW548_04495 PF11791 Aconitate B N-terminal domain KW548_04500 PF06062 Uncharacterised protein family (UPF0231) KW548_04505 PF00543 Nitrogen regulatory protein P-II KW548_04515 PF13416 Bacterial extracellular solute-binding protein KW548_04525 PF00005 ABC transporter KW548_04525 PF08402 TOBE domain KW548_04530 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KW548_04530 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KW548_04530 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KW548_04530 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KW548_04535 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain KW548_04535 PF06165 Glycosyltransferase family 36 KW548_04540 PF00728 Glycosyl hydrolase family 20, catalytic domain KW548_04540 PF02838 Glycosyl hydrolase family 20, domain 2 KW548_04555 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KW548_04555 PF00005 ABC transporter KW548_04560 PF00005 ABC transporter KW548_04560 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KW548_04565 PF00528 Binding-protein-dependent transport system inner membrane component KW548_04565 PF12911 N-terminal TM domain of oligopeptide transport permease C KW548_04570 PF00528 Binding-protein-dependent transport system inner membrane component KW548_04575 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KW548_04580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW548_04580 PF00512 His Kinase A (phospho-acceptor) domain KW548_04580 PF00072 Response regulator receiver domain KW548_04580 PF09308 LuxQ, periplasmic KW548_04585 PF05175 Methyltransferase small domain KW548_04585 PF08468 Methyltransferase small domain N-terminal KW548_04590 PF01594 AI-2E family transporter KW548_04595 PF00202 Aminotransferase class-III KW548_04600 PF01521 Iron-sulphur cluster biosynthesis KW548_04605 PF00529 HlyD membrane-fusion protein of T1SS KW548_04605 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KW548_04610 PF00873 AcrB/AcrD/AcrF family KW548_04615 PF01476 LysM domain KW548_04615 PF08525 Opacity-associated protein A N-terminal motif KW548_04615 PF01551 Peptidase family M23 KW548_04620 PF00579 tRNA synthetases class I (W and Y) KW548_04630 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family KW548_04635 PF13609 Gram-negative porin KW548_04640 PF01272 Transcription elongation factor, GreA/GreB, C-term KW548_04640 PF03449 Transcription elongation factor, N-terminal KW548_04645 PF01985 CRS1 / YhbY (CRM) domain KW548_04650 PF01728 FtsJ-like methyltransferase KW548_04655 PF00004 ATPase family associated with various cellular activities (AAA) KW548_04655 PF17862 AAA+ lid domain KW548_04655 PF06480 FtsH Extracellular KW548_04655 PF01434 Peptidase family M41 KW548_04660 PF00809 Pterin binding enzyme KW548_04665 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KW548_04665 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KW548_04665 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KW548_04665 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KW548_04675 PF00583 Acetyltransferase (GNAT) family KW548_04680 PF00563 EAL domain KW548_04680 PF00990 Diguanylate cyclase, GGDEF domain KW548_04680 PF03707 Bacterial signalling protein N terminal repeat KW548_04685 PF00009 Elongation factor Tu GTP binding domain KW548_04685 PF03144 Elongation factor Tu domain 2 KW548_04685 PF16658 Class II release factor RF3, C-terminal domain KW548_04690 PF00270 DEAD/DEAH box helicase KW548_04690 PF00271 Helicase conserved C-terminal domain KW548_04695 PF05175 Methyltransferase small domain KW548_04700 PF05525 Branched-chain amino acid transport protein KW548_04710 PF01336 OB-fold nucleic acid binding domain KW548_04710 PF00152 tRNA synthetases class II (D, K and N) KW548_04715 PF01136 Peptidase family U32 KW548_04720 PF01136 Peptidase family U32 KW548_04725 PF03707 Bacterial signalling protein N terminal repeat KW548_04725 PF00990 Diguanylate cyclase, GGDEF domain KW548_04725 PF00563 EAL domain KW548_04730 PF02036 SCP-2 sterol transfer family KW548_04735 PF13508 Acetyltransferase (GNAT) domain KW548_04740 PF03840 Preprotein translocase SecG subunit KW548_04755 PF02576 RimP N-terminal domain KW548_04755 PF17384 RimP C-terminal SH3 domain KW548_04760 PF13184 NusA-like KH domain KW548_04760 PF08529 NusA N-terminal domain KW548_04760 PF00575 S1 RNA binding domain KW548_04765 PF04760 Translation initiation factor IF-2, N-terminal region KW548_04765 PF08364 Bacterial translation initiation factor IF-2 associated region KW548_04765 PF11987 Translation-initiation factor 2 KW548_04765 PF00009 Elongation factor Tu GTP binding domain KW548_04770 PF02033 Ribosome-binding factor A KW548_04785 PF07992 Pyridine nucleotide-disulphide oxidoreductase KW548_04785 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster KW548_04790 PF04898 Glutamate synthase central domain KW548_04790 PF01645 Conserved region in glutamate synthase KW548_04790 PF01493 GXGXG motif KW548_04790 PF00310 Glutamine amidotransferases class-II KW548_04795 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster KW548_04795 PF07992 Pyridine nucleotide-disulphide oxidoreductase KW548_04800 PF01493 GXGXG motif KW548_04800 PF04898 Glutamate synthase central domain KW548_04800 PF00310 Glutamine amidotransferases class-II KW548_04800 PF01645 Conserved region in glutamate synthase KW548_04805 PF04055 Radical SAM superfamily KW548_04805 PF16199 Radical_SAM C-terminal domain KW548_04810 PF00563 EAL domain KW548_04810 PF01590 GAF domain KW548_04810 PF00990 Diguanylate cyclase, GGDEF domain KW548_04810 PF00360 Phytochrome region KW548_04815 PF00989 PAS fold KW548_04815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW548_04815 PF00512 His Kinase A (phospho-acceptor) domain KW548_04815 PF01627 Hpt domain KW548_04815 PF00072 Response regulator receiver domain KW548_04815 PF18415 Histidine kinase receptor ArcB trans-membrane domain KW548_04825 PF02321 Outer membrane efflux protein KW548_04830 PF00293 NUDIX domain KW548_04835 PF06853 Protein of unknown function (DUF1249) KW548_04840 PF00149 Calcineurin-like phosphoesterase KW548_04845 PF05728 Uncharacterised protein family (UPF0227) KW548_04850 PF00204 DNA gyrase B KW548_04850 PF01751 Toprim domain KW548_04850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW548_04850 PF00986 DNA gyrase B subunit, carboxyl terminus KW548_04855 PF00521 DNA gyrase/topoisomerase IV, subunit A KW548_04855 PF03989 DNA gyrase C-terminal domain, beta-propeller KW548_04860 PF13180 PDZ domain KW548_04870 PF06295 Protein of unknown function (DUF1043) KW548_04880 PF00572 Ribosomal protein L13 KW548_04885 PF00380 Ribosomal protein S9/S16 KW548_04890 PF00355 Rieske [2Fe-2S] domain KW548_04890 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal KW548_04895 PF00033 Cytochrome b/b6/petB KW548_04895 PF00032 Cytochrome b(C-terminal)/b6/petD KW548_04900 PF02167 Cytochrome C1 family KW548_04905 PF00043 Glutathione S-transferase, C-terminal domain KW548_04905 PF02798 Glutathione S-transferase, N-terminal domain KW548_04910 PF04386 Stringent starvation protein B KW548_04915 PF04972 BON domain KW548_04925 PF02021 Uncharacterised protein family UPF0102 KW548_04930 PF04348 LppC putative lipoprotein KW548_04935 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KW548_04950 PF01795 MraW methylase family KW548_04955 PF04999 Cell division protein FtsL KW548_04960 PF03717 Penicillin-binding Protein dimerisation domain KW548_04960 PF00905 Penicillin binding protein transpeptidase domain KW548_04965 PF08245 Mur ligase middle domain KW548_04965 PF02875 Mur ligase family, glutamate ligase domain KW548_04965 PF01225 Mur ligase family, catalytic domain KW548_04970 PF02875 Mur ligase family, glutamate ligase domain KW548_04970 PF01225 Mur ligase family, catalytic domain KW548_04970 PF08245 Mur ligase middle domain KW548_04975 PF00953 Glycosyl transferase family 4 KW548_04975 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 KW548_04980 PF02875 Mur ligase family, glutamate ligase domain KW548_04980 PF08245 Mur ligase middle domain KW548_04985 PF01098 Cell cycle protein KW548_04990 PF03033 Glycosyltransferase family 28 N-terminal domain KW548_04990 PF04101 Glycosyltransferase family 28 C-terminal domain KW548_04995 PF08245 Mur ligase middle domain KW548_04995 PF02875 Mur ligase family, glutamate ligase domain KW548_04995 PF01225 Mur ligase family, catalytic domain KW548_05000 PF08478 POTRA domain, FtsQ-type KW548_05000 PF03799 Cell division protein FtsQ KW548_05005 PF02491 SHS2 domain inserted in FTSA KW548_05010 PF12327 FtsZ family, C-terminal domain KW548_05010 PF00091 Tubulin/FtsZ family, GTPase domain KW548_05015 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase KW548_05025 PF00293 NUDIX domain KW548_05030 PF05173 Dihydrodipicolinate reductase, C-terminus KW548_05030 PF01113 Dihydrodipicolinate reductase, N-terminus KW548_05035 PF00117 Glutamine amidotransferase class-I KW548_05035 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain KW548_05045 PF01925 Sulfite exporter TauE/SafE KW548_05050 PF03466 LysR substrate binding domain KW548_05050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_05055 PF01228 Glycine radical KW548_05060 PF01261 Xylose isomerase-like TIM barrel KW548_05065 PF03167 Uracil DNA glycosylase superfamily KW548_05080 PF01235 Sodium:alanine symporter family KW548_05085 PF03883 Peroxide stress protein YaaA KW548_05095 PF01026 TatD related DNase KW548_05100 PF01773 Na+ dependent nucleoside transporter N-terminus KW548_05100 PF07670 Nucleoside recognition KW548_05100 PF07662 Na+ dependent nucleoside transporter C-terminus KW548_05105 PF01791 DeoC/LacD family aldolase KW548_05110 PF02885 Glycosyl transferase family, helical bundle domain KW548_05110 PF00591 Glycosyl transferase family, a/b domain KW548_05110 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain KW548_05115 PF01676 Metalloenzyme superfamily KW548_05120 PF01048 Phosphorylase superfamily KW548_05130 PF18429 Domain of unknown function (DUF5609) KW548_05140 PF18073 Rubredoxin metal binding domain KW548_05150 PF01965 DJ-1/PfpI family KW548_05155 PF02558 Ketopantoate reductase PanE/ApbA KW548_05155 PF08546 Ketopantoate reductase PanE/ApbA C terminal KW548_05160 PF03502 Nucleoside-specific channel-forming protein, Tsx KW548_05170 PF04545 Sigma-70, region 4 KW548_05170 PF04542 Sigma-70 region 2 KW548_05180 PF07690 Major Facilitator Superfamily KW548_05195 PF05175 Methyltransferase small domain KW548_05200 PF01722 BolA-like protein KW548_05210 PF03116 NQR2, RnfD, RnfE family KW548_05220 PF02508 Rnf-Nqr subunit, membrane protein KW548_05225 PF02508 Rnf-Nqr subunit, membrane protein KW548_05230 PF00970 Oxidoreductase FAD-binding domain KW548_05230 PF00111 2Fe-2S iron-sulfur cluster binding domain KW548_05230 PF00175 Oxidoreductase NAD-binding domain KW548_05235 PF02424 ApbE family KW548_05245 PF00990 Diguanylate cyclase, GGDEF domain KW548_05245 PF00072 Response regulator receiver domain KW548_05250 PF00817 impB/mucB/samB family KW548_05250 PF11799 impB/mucB/samB family C-terminal domain KW548_05250 PF11798 IMS family HHH motif KW548_05260 PF01272 Transcription elongation factor, GreA/GreB, C-term KW548_05260 PF03449 Transcription elongation factor, N-terminal KW548_05270 PF00704 Glycosyl hydrolases family 18 KW548_05270 PF06483 Chitinase C KW548_05275 PF00209 Sodium:neurotransmitter symporter family KW548_05285 PF08443 RimK-like ATP-grasp domain KW548_05285 PF18030 RimK PreATP-grasp domain KW548_05290 PF08443 RimK-like ATP-grasp domain KW548_05290 PF18030 RimK PreATP-grasp domain KW548_05295 PF07687 Peptidase dimerisation domain KW548_05295 PF01546 Peptidase family M20/M25/M40 KW548_05305 PF00156 Phosphoribosyl transferase domain KW548_05310 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) KW548_05320 PF01472 PUA domain KW548_05320 PF00696 Amino acid kinase family KW548_05325 PF00171 Aldehyde dehydrogenase family KW548_05330 PF03477 ATP cone domain KW548_05335 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KW548_05335 PF01872 RibD C-terminal domain KW548_05340 PF00677 Lumazine binding domain KW548_05345 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KW548_05345 PF00925 GTP cyclohydrolase II KW548_05350 PF00885 6,7-dimethyl-8-ribityllumazine synthase KW548_05355 PF01029 NusB family KW548_05360 PF00586 AIR synthase related protein, N-terminal domain KW548_05360 PF02769 AIR synthase related protein, C-terminal domain KW548_05365 PF04608 Phosphatidylglycerophosphatase A KW548_05370 PF11944 Protein of unknown function (DUF3461) KW548_05375 PF01909 Nucleotidyltransferase domain KW548_05375 PF01966 HD domain KW548_05375 PF08335 GlnD PII-uridylyltransferase KW548_05375 PF01842 ACT domain KW548_05380 PF00557 Metallopeptidase family M24 KW548_05385 PF00318 Ribosomal protein S2 KW548_05390 PF00889 Elongation factor TS KW548_05395 PF00696 Amino acid kinase family KW548_05400 PF01765 Ribosome recycling factor KW548_05405 PF01255 Putative undecaprenyl diphosphate synthase KW548_05415 PF13288 DXP reductoisomerase C-terminal domain KW548_05415 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase KW548_05415 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain KW548_05420 PF17820 PDZ domain KW548_05420 PF02163 Peptidase family M50 KW548_05425 PF01103 Surface antigen KW548_05425 PF07244 Surface antigen variable number repeat KW548_05430 PF03938 Outer membrane protein (OmpH-like) KW548_05435 PF00132 Bacterial transferase hexapeptide (six repeats) KW548_05435 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD KW548_05440 PF07977 FabA-like domain KW548_05445 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 KW548_05445 PF00132 Bacterial transferase hexapeptide (six repeats) KW548_05450 PF02684 Lipid-A-disaccharide synthetase KW548_05455 PF01351 Ribonuclease HII KW548_05460 PF07733 Bacterial DNA polymerase III alpha NTPase domain KW548_05460 PF01336 OB-fold nucleic acid binding domain KW548_05460 PF02811 PHP domain KW548_05460 PF14579 Helix-hairpin-helix motif KW548_05460 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KW548_05470 PF09179 TilS substrate binding domain KW548_05470 PF01171 PP-loop family KW548_05470 PF11734 TilS substrate C-terminal domain KW548_05475 PF00034 Cytochrome c KW548_05480 PF00543 Nitrogen regulatory protein P-II KW548_05485 PF03372 Endonuclease/Exonuclease/phosphatase family KW548_05495 PF01464 Transglycosylase SLT domain KW548_05495 PF01476 LysM domain KW548_05500 PF00753 Metallo-beta-lactamase superfamily KW548_05500 PF16123 Hydroxyacylglutathione hydrolase C-terminus KW548_05505 PF08241 Methyltransferase domain KW548_05510 PF00075 RNase H KW548_05515 PF00929 Exonuclease KW548_05525 PF09317 Domain of unknown function (DUF1974) KW548_05525 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KW548_05525 PF02770 Acyl-CoA dehydrogenase, middle domain KW548_05525 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KW548_05530 PF13580 SIS domain KW548_05535 PF13230 Glutamine amidotransferases class-II KW548_05540 PF04073 Aminoacyl-tRNA editing domain KW548_05540 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KW548_05540 PF03129 Anticodon binding domain KW548_05545 PF18389 TrmO C-terminal domain KW548_05545 PF01980 tRNA-methyltransferase O KW548_05550 PF01197 Ribosomal protein L31 KW548_05555 PF00444 Ribosomal protein L36 KW548_05560 PF03806 AbgT putative transporter family KW548_05565 PF03180 NLPA lipoprotein KW548_05570 PF00528 Binding-protein-dependent transport system inner membrane component KW548_05575 PF00005 ABC transporter KW548_05575 PF09383 NIL domain KW548_05590 PF00356 Bacterial regulatory proteins, lacI family KW548_05595 PF00367 phosphotransferase system, EIIB KW548_05595 PF02378 Phosphotransferase system, EIIC KW548_05600 PF00128 Alpha amylase, catalytic domain KW548_05600 PF16657 Maltogenic Amylase, C-terminal domain KW548_05625 PF13533 Biotin-lipoyl like KW548_05630 PF00873 AcrB/AcrD/AcrF family KW548_05640 PF00464 Serine hydroxymethyltransferase KW548_05655 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family KW548_05655 PF04055 Radical SAM superfamily KW548_05660 PF03099 Biotin/lipoate A/B protein ligase family KW548_05665 PF04359 Protein of unknown function (DUF493) KW548_05670 PF07943 Penicillin-binding protein 5, C-terminal domain KW548_05670 PF00768 D-alanyl-D-alanine carboxypeptidase KW548_05675 PF03330 Lytic transglycolase KW548_05675 PF05036 Sporulation related domain KW548_05680 PF01098 Cell cycle protein KW548_05690 PF02590 Predicted SPOUT methyltransferase KW548_05705 PF04390 Lipopolysaccharide-assembly KW548_05710 PF13603 Leucyl-tRNA synthetase, Domain 2 KW548_05710 PF08264 Anticodon-binding domain of tRNA KW548_05710 PF00133 tRNA synthetases class I (I, L, M and V) KW548_05715 PF07295 Zinc-ribbon containing domain KW548_05720 PF00795 Carbon-nitrogen hydrolase KW548_05725 PF03471 Transporter associated domain KW548_05725 PF00571 CBS domain KW548_05730 PF02130 Uncharacterized protein family UPF0054 KW548_05735 PF02562 PhoH-like protein KW548_05740 PF04055 Radical SAM superfamily KW548_05740 PF01938 TRAM domain KW548_05740 PF00919 Uncharacterized protein family UPF0004 KW548_05745 PF01494 FAD binding domain KW548_05750 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 KW548_05755 PF05524 PEP-utilising enzyme, N-terminal KW548_05755 PF00391 PEP-utilising enzyme, mobile domain KW548_05755 PF02896 PEP-utilising enzyme, TIM barrel domain KW548_05760 PF00381 PTS HPr component phosphorylation site KW548_05765 PF00291 Pyridoxal-phosphate dependent enzyme KW548_05780 PF00533 BRCA1 C Terminus (BRCT) domain KW548_05780 PF01653 NAD-dependent DNA ligase adenylation domain KW548_05780 PF03120 NAD-dependent DNA ligase OB-fold domain KW548_05780 PF03119 NAD-dependent DNA ligase C4 zinc finger domain KW548_05780 PF12826 Helix-hairpin-helix motif KW548_05785 PF13609 Gram-negative porin KW548_05800 PF01145 SPFH domain / Band 7 family KW548_05800 PF16200 C-terminal region of band_7 KW548_05805 PF00085 Thioredoxin KW548_05810 PF00106 short chain dehydrogenase KW548_05815 PF08338 Domain of unknown function (DUF1731) KW548_05815 PF01370 NAD dependent epimerase/dehydratase family KW548_05820 PF07556 Protein of unknown function (DUF1538) KW548_05825 PF07556 Protein of unknown function (DUF1538) KW548_05840 PF12850 Calcineurin-like phosphoesterase superfamily domain KW548_05855 PF17323 Trans-membrane regulatory protein ToxS KW548_05860 PF00486 Transcriptional regulatory protein, C terminal KW548_05865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW548_05865 PF00183 Hsp90 protein KW548_05870 PF05191 Adenylate kinase, active site lid KW548_05875 PF00762 Ferrochelatase KW548_05895 PF00403 Heavy-metal-associated domain KW548_05900 PF00749 tRNA synthetases class I (E and Q), catalytic domain KW548_05910 PF00691 OmpA family KW548_05910 PF05736 OprF membrane domain KW548_05965 PF04316 Anti-sigma-28 factor, FlgM KW548_05975 PF00072 Response regulator receiver domain KW548_05975 PF01584 CheW-like domain KW548_05980 PF01739 CheR methyltransferase, SAM binding domain KW548_05980 PF03705 CheR methyltransferase, all-alpha domain KW548_05985 PF00460 Flagella basal body rod protein KW548_05990 PF00460 Flagella basal body rod protein KW548_05990 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KW548_05995 PF03963 Flagellar hook capping protein - N-terminal region KW548_05995 PF13860 FlgD Ig-like domain KW548_05995 PF13861 FlgD Tudor-like domain KW548_06000 PF07559 Flagellar basal body protein FlaE KW548_06000 PF00460 Flagella basal body rod protein KW548_06000 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KW548_06005 PF00460 Flagella basal body rod protein KW548_06005 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KW548_06010 PF00460 Flagella basal body rod protein KW548_06010 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KW548_06015 PF02107 Flagellar L-ring protein KW548_06020 PF02119 Flagellar P-ring protein KW548_06025 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase KW548_06025 PF10135 Rod binding protein KW548_06030 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KW548_06030 PF07196 Flagellin hook IN motif KW548_06035 PF00700 Bacterial flagellin C-terminal helical region KW548_06035 PF00669 Bacterial flagellin N-terminal helical region KW548_06040 PF00700 Bacterial flagellin C-terminal helical region KW548_06040 PF07196 Flagellin hook IN motif KW548_06040 PF00669 Bacterial flagellin N-terminal helical region KW548_06055 PF02899 Phage integrase, N-terminal SAM-like domain KW548_06055 PF00589 Phage integrase family KW548_06105 PF05840 Bacteriophage replication gene A protein (GPA) KW548_06260 PF00700 Bacterial flagellin C-terminal helical region KW548_06260 PF07196 Flagellin hook IN motif KW548_06260 PF00669 Bacterial flagellin N-terminal helical region KW548_06365 PF01926 50S ribosome-binding GTPase KW548_06365 PF06071 Protein of unknown function (DUF933) KW548_06370 PF01195 Peptidyl-tRNA hydrolase KW548_06375 PF14572 Phosphoribosyl synthetase-associated domain KW548_06375 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KW548_06380 PF08544 GHMP kinases C terminal KW548_06380 PF00288 GHMP kinases N terminal domain KW548_06385 PF03550 Outer membrane lipoprotein LolB KW548_06390 PF01488 Shikimate / quinate 5-dehydrogenase KW548_06390 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain KW548_06390 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain KW548_06395 PF03462 PCRF domain KW548_06395 PF00472 RF-1 domain KW548_06400 PF17827 PrmC N-terminal domain KW548_06400 PF13847 Methyltransferase domain KW548_06410 PF13369 Transglutaminase-like superfamily KW548_06415 PF00793 DAHP synthetase I family KW548_06420 PF00149 Calcineurin-like phosphoesterase KW548_06420 PF02872 5'-nucleotidase, C-terminal domain KW548_06425 PF04073 Aminoacyl-tRNA editing domain KW548_06445 PF03358 NADPH-dependent FMN reductase KW548_06450 PF03960 ArsC family KW548_06455 PF01435 Peptidase family M48 KW548_06455 PF13181 Tetratricopeptide repeat KW548_06465 PF01594 AI-2E family transporter KW548_06470 PF00672 HAMP domain KW548_06470 PF02743 Cache domain KW548_06470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW548_06475 PF00578 AhpC/TSA family KW548_06480 PF01842 ACT domain KW548_06485 PF00701 Dihydrodipicolinate synthetase family KW548_06490 PF06804 NlpB/DapX lipoprotein KW548_06495 PF13726 Na+-H+ antiporter family KW548_06495 PF03553 Na+/H+ antiporter family KW548_06500 PF00929 Exonuclease KW548_06505 PF18393 MotY N-terminal domain KW548_06505 PF00691 OmpA family KW548_06510 PF10952 Protein of unknown function (DUF2753) KW548_06515 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KW548_06520 PF00633 Helix-hairpin-helix motif KW548_06520 PF10576 Iron-sulfur binding domain of endonuclease III KW548_06520 PF00730 HhH-GPD superfamily base excision DNA repair protein KW548_06525 PF02508 Rnf-Nqr subunit, membrane protein KW548_06530 PF04205 FMN-binding domain KW548_06540 PF13375 RnfC Barrel sandwich hybrid domain KW548_06540 PF12838 4Fe-4S dicluster domain KW548_06540 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit KW548_06540 PF10531 SLBB domain KW548_06545 PF04060 Putative Fe-S cluster KW548_06550 PF02508 Rnf-Nqr subunit, membrane protein KW548_06555 PF01464 Transglycosylase SLT domain KW548_06555 PF01476 LysM domain KW548_06575 PF00460 Flagella basal body rod protein KW548_06585 PF03963 Flagellar hook capping protein - N-terminal region KW548_06585 PF13861 FlgD Tudor-like domain KW548_06585 PF13860 FlgD Ig-like domain KW548_06590 PF07559 Flagellar basal body protein FlaE KW548_06590 PF00460 Flagella basal body rod protein KW548_06590 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KW548_06595 PF00460 Flagella basal body rod protein KW548_06595 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KW548_06600 PF00460 Flagella basal body rod protein KW548_06600 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KW548_06610 PF02119 Flagellar P-ring protein KW548_06615 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase KW548_06615 PF10135 Rod binding protein KW548_06620 PF00460 Flagella basal body rod protein KW548_06620 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KW548_06640 PF13677 Membrane MotB of proton-channel complex MotA/MotB KW548_06640 PF00691 OmpA family KW548_06645 PF01618 MotA/TolQ/ExbB proton channel family KW548_06650 PF04545 Sigma-70, region 4 KW548_06650 PF04542 Sigma-70 region 2 KW548_06655 PF03748 Flagellar basal body-associated protein FliL KW548_06670 PF02561 Flagellar protein FliS KW548_06675 PF07196 Flagellin hook IN motif KW548_06675 PF02465 Flagellar hook-associated protein 2 N-terminus KW548_06675 PF07195 Flagellar hook-associated protein 2 C-terminus KW548_06750 PF00669 Bacterial flagellin N-terminal helical region KW548_06750 PF00700 Bacterial flagellin C-terminal helical region KW548_06760 PF00771 FHIPEP family KW548_06765 PF01312 FlhB HrpN YscU SpaS Family KW548_06770 PF01311 Bacterial export proteins, family 1 KW548_06775 PF01313 Bacterial export proteins, family 3 KW548_06780 PF00813 FliP family KW548_06785 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term KW548_06795 PF18393 MotY N-terminal domain KW548_06795 PF00691 OmpA family KW548_06800 PF00158 Sigma-54 interaction domain KW548_06800 PF00072 Response regulator receiver domain KW548_06800 PF02954 Bacterial regulatory protein, Fis family KW548_06805 PF02049 Flagellar hook-basal body complex protein FliE KW548_06810 PF08345 Flagellar M-ring protein C-terminal KW548_06810 PF01514 Secretory protein of YscJ/FliF family KW548_06815 PF01706 FliG C-terminal domain KW548_06815 PF14841 FliG middle domain KW548_06815 PF14842 FliG N-terminal domain KW548_06825 PF18269 T3SS EscN ATPase C-terminal domain KW548_06825 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KW548_06840 PF01551 Peptidase family M23 KW548_06840 PF04225 Opacity-associated protein A LysM-like domain KW548_06850 PF00664 ABC transporter transmembrane region KW548_06850 PF00005 ABC transporter KW548_06855 PF00005 ABC transporter KW548_06860 PF13193 AMP-binding enzyme C-terminal domain KW548_06860 PF00501 AMP-binding enzyme KW548_06870 PF00975 Thioesterase domain KW548_06885 PF00501 AMP-binding enzyme KW548_06885 PF08242 Methyltransferase domain KW548_06885 PF00550 Phosphopantetheine attachment site KW548_06885 PF00668 Condensation domain KW548_06890 PF07690 Major Facilitator Superfamily KW548_06895 PF00593 TonB dependent receptor KW548_06895 PF07715 TonB-dependent Receptor Plug Domain KW548_06900 PF12833 Helix-turn-helix domain KW548_06900 PF02311 AraC-like ligand binding domain KW548_06915 PF17757 UvrB interaction domain KW548_06915 PF00271 Helicase conserved C-terminal domain KW548_06915 PF12344 Ultra-violet resistance protein B KW548_06915 PF02151 UvrB/uvrC motif KW548_06915 PF04851 Type III restriction enzyme, res subunit KW548_06920 PF02954 Bacterial regulatory protein, Fis family KW548_06920 PF00072 Response regulator receiver domain KW548_06920 PF00158 Sigma-54 interaction domain KW548_06925 PF01627 Hpt domain KW548_06930 PF01933 Uncharacterised protein family UPF0052 KW548_06935 PF04055 Radical SAM superfamily KW548_06935 PF06463 Molybdenum Cofactor Synthesis C KW548_06940 PF00994 Probable molybdopterin binding domain KW548_06945 PF01967 MoaC family KW548_06950 PF02597 ThiS family KW548_06965 PF01743 Poly A polymerase head domain KW548_06965 PF00571 CBS domain KW548_06965 PF01368 DHH family KW548_06965 PF02272 DHHA1 domain KW548_06980 PF01048 Phosphorylase superfamily KW548_07000 PF09334 tRNA synthetases class I (M) KW548_07000 PF01588 Putative tRNA binding domain KW548_07005 PF10609 NUBPL iron-transfer P-loop NTPase KW548_07010 PF00485 Phosphoribulokinase / Uridine kinase family KW548_07015 PF05170 AsmA family KW548_07020 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP KW548_07020 PF12557 Cob(I)alamin adenosyltransferase N terminal KW548_07030 PF01227 GTP cyclohydrolase I KW548_07035 PF02152 Dihydroneopterin aldolase KW548_07040 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) KW548_07040 PF01227 GTP cyclohydrolase I KW548_07045 PF01451 Low molecular weight phosphotyrosine protein phosphatase KW548_07060 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KW548_07060 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KW548_07065 PF00462 Glutaredoxin KW548_07070 PF01131 DNA topoisomerase KW548_07070 PF01751 Toprim domain KW548_07080 PF01161 Phosphatidylethanolamine-binding protein KW548_07085 PF00106 short chain dehydrogenase KW548_07090 PF00850 Histone deacetylase domain KW548_07095 PF00293 NUDIX domain KW548_07095 PF13344 Haloacid dehalogenase-like hydrolase KW548_07110 PF03466 LysR substrate binding domain KW548_07110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_07115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_07115 PF03466 LysR substrate binding domain KW548_07155 PF00072 Response regulator receiver domain KW548_07155 PF02954 Bacterial regulatory protein, Fis family KW548_07155 PF00158 Sigma-54 interaction domain KW548_07170 PF00884 Sulfatase KW548_07170 PF11893 Domain of unknown function (DUF3413) KW548_07175 PF07208 Protein of unknown function (DUF1414) KW548_07180 PF04245 37-kD nucleoid-associated bacterial protein KW548_07200 PF03553 Na+/H+ antiporter family KW548_07205 PF01118 Semialdehyde dehydrogenase, NAD binding domain KW548_07205 PF02774 Semialdehyde dehydrogenase, dimerisation domain KW548_07210 PF00520 Ion transport protein KW548_07210 PF00027 Cyclic nucleotide-binding domain KW548_07215 PF01914 MarC family integral membrane protein KW548_07220 PF00465 Iron-containing alcohol dehydrogenase KW548_07220 PF00171 Aldehyde dehydrogenase family KW548_07225 PF03776 Septum formation topological specificity factor MinE KW548_07230 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain KW548_07235 PF03775 Septum formation inhibitor MinC, C-terminal domain KW548_07235 PF05209 Septum formation inhibitor MinC, N-terminal domain KW548_07240 PF05166 YcgL domain KW548_07245 PF13406 Transglycosylase SLT domain KW548_07250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_07250 PF03466 LysR substrate binding domain KW548_07255 PF07662 Na+ dependent nucleoside transporter C-terminus KW548_07255 PF07670 Nucleoside recognition KW548_07255 PF01773 Na+ dependent nucleoside transporter N-terminus KW548_07260 PF03692 Putative zinc- or iron-chelating domain KW548_07270 PF03692 Putative zinc- or iron-chelating domain KW548_07300 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KW548_07310 PF00245 Alkaline phosphatase KW548_07325 PF13847 Methyltransferase domain KW548_07330 PF02743 Cache domain KW548_07330 PF00672 HAMP domain KW548_07330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW548_07335 PF01263 Aldose 1-epimerase KW548_07340 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KW548_07340 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KW548_07345 PF01641 SelR domain KW548_07355 PF07023 Protein of unknown function (DUF1315) KW548_07360 PF02810 SEC-C motif KW548_07365 PF00563 EAL domain KW548_07365 PF08668 HDOD domain KW548_07375 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KW548_07380 PF09190 DALR domain KW548_07380 PF01406 tRNA synthetases class I (C) catalytic domain KW548_07385 PF00265 Thymidine kinase KW548_07390 PF01176 Translation initiation factor 1A / IF-1 KW548_07395 PF04376 Arginine-tRNA-protein transferase, N terminus KW548_07395 PF04377 Arginine-tRNA-protein transferase, C terminus KW548_07400 PF03588 Leucyl/phenylalanyl-tRNA protein transferase KW548_07415 PF10692 Protein of unknown function (DUF2498) KW548_07420 PF01131 DNA topoisomerase KW548_07420 PF01396 Topoisomerase DNA binding C4 zinc finger KW548_07420 PF08272 Topoisomerase I zinc-ribbon-like KW548_07420 PF01751 Toprim domain KW548_07425 PF00483 Nucleotidyl transferase KW548_07430 PF08323 Starch synthase catalytic domain KW548_07430 PF00534 Glycosyl transferases group 1 KW548_07455 PF00356 Bacterial regulatory proteins, lacI family KW548_07460 PF02613 Nitrate reductase delta subunit KW548_07465 PF00072 Response regulator receiver domain KW548_07465 PF00486 Transcriptional regulatory protein, C terminal KW548_07475 PF13847 Methyltransferase domain KW548_07480 PF17193 MukF C-terminal domain KW548_07480 PF17192 MukF middle domain KW548_07480 PF03882 MukF winged-helix domain KW548_07485 PF04288 MukE-like family KW548_07505 PF08443 RimK-like ATP-grasp domain KW548_07505 PF18030 RimK PreATP-grasp domain KW548_07510 PF08003 Protein of unknown function (DUF1698) KW548_07515 PF13649 Methyltransferase domain KW548_07525 PF01336 OB-fold nucleic acid binding domain KW548_07525 PF00152 tRNA synthetases class II (D, K and N) KW548_07525 PF02938 GAD domain KW548_07535 PF03971 Monomeric isocitrate dehydrogenase KW548_07540 PF00313 'Cold-shock' DNA-binding domain KW548_07545 PF02617 ATP-dependent Clp protease adaptor protein ClpS KW548_07550 PF00004 ATPase family associated with various cellular activities (AAA) KW548_07550 PF17871 AAA lid domain KW548_07550 PF07724 AAA domain (Cdc48 subfamily) KW548_07550 PF10431 C-terminal, D2-small domain, of ClpB protein KW548_07550 PF02861 Clp amino terminal domain, pathogenicity island component KW548_07575 PF01226 Formate/nitrite transporter KW548_07585 PF03649 Uncharacterised protein family (UPF0014) KW548_07590 PF06796 Periplasmic nitrate reductase protein NapE KW548_07595 PF03264 NapC/NirT cytochrome c family, N-terminal region KW548_07600 PF00384 Molybdopterin oxidoreductase KW548_07600 PF18364 Molybdopterin oxidoreductase N-terminal domain KW548_07600 PF01568 Molydopterin dinucleotide binding domain KW548_07605 PF02696 Uncharacterized ACR, YdiU/UPF0061 family KW548_07615 PF02075 Crossover junction endodeoxyribonuclease RuvC KW548_07620 PF07499 RuvA, C-terminal domain KW548_07620 PF01330 RuvA N terminal domain KW548_07630 PF01654 Cytochrome bd terminal oxidase subunit I KW548_07635 PF02322 Cytochrome bd terminal oxidase subunit II KW548_07640 PF08173 Membrane bound YbgT-like protein KW548_07650 PF03061 Thioesterase superfamily KW548_07655 PF01618 MotA/TolQ/ExbB proton channel family KW548_07660 PF02472 Biopolymer transport protein ExbD/TolR KW548_07670 PF04052 TolB amino-terminal domain KW548_07670 PF07676 WD40-like Beta Propeller Repeat KW548_07675 PF00691 OmpA family KW548_07680 PF16331 TolA binding protein trimerisation KW548_07680 PF13525 Outer membrane lipoprotein KW548_07685 PF02445 Quinolinate synthetase A protein KW548_07705 PF00089 Trypsin KW548_07720 PF00072 Response regulator receiver domain KW548_07720 PF09308 LuxQ, periplasmic KW548_07720 PF00512 His Kinase A (phospho-acceptor) domain KW548_07720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW548_07725 PF06610 L-alanine exporter KW548_07755 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KW548_07770 PF04705 Thiostrepton-resistance methylase, N terminus KW548_07770 PF00588 SpoU rRNA Methylase family KW548_07785 PF01965 DJ-1/PfpI family KW548_07795 PF08241 Methyltransferase domain KW548_07800 PF00069 Protein kinase domain KW548_07800 PF03781 Sulfatase-modifying factor enzyme 1 KW548_07805 PF00925 GTP cyclohydrolase II KW548_07825 PF03466 LysR substrate binding domain KW548_07825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_07830 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KW548_07830 PF01872 RibD C-terminal domain KW548_07835 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KW548_07835 PF01872 RibD C-terminal domain KW548_07870 PF02368 Bacterial Ig-like domain (group 2) KW548_07870 PF11999 Protein of unknown function (DUF3494) KW548_07875 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin KW548_07880 PF01850 PIN domain KW548_07890 PF02368 Bacterial Ig-like domain (group 2) KW548_07890 PF11999 Protein of unknown function (DUF3494) KW548_07895 PF10996 Beta-Casp domain KW548_07895 PF00753 Metallo-beta-lactamase superfamily KW548_07895 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain KW548_07970 PF04851 Type III restriction enzyme, res subunit KW548_07970 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) KW548_07970 PF00271 Helicase conserved C-terminal domain KW548_07970 PF08463 EcoEI R protein C-terminal KW548_07975 PF02384 N-6 DNA Methylase KW548_07980 PF01420 Type I restriction modification DNA specificity domain KW548_08010 PF00486 Transcriptional regulatory protein, C terminal KW548_08010 PF18500 CadC C-terminal domain 1 KW548_08085 PF00132 Bacterial transferase hexapeptide (six repeats) KW548_08085 PF12804 MobA-like NTP transferase domain KW548_08085 PF03479 Plants and Prokaryotes Conserved (PCC) domain KW548_08090 PF01238 Phosphomannose isomerase type I KW548_08110 PF00672 HAMP domain KW548_08110 PF00512 His Kinase A (phospho-acceptor) domain KW548_08110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW548_08120 PF00535 Glycosyl transferase family 2 KW548_08125 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase KW548_08135 PF16295 Tetracyclin repressor-like, C-terminal domain KW548_08135 PF00440 Bacterial regulatory proteins, tetR family KW548_08145 PF12241 Trans-2-enoyl-CoA reductase catalytic region KW548_08145 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase KW548_08145 PF07055 Enoyl reductase FAD binding domain KW548_08175 PF03781 Sulfatase-modifying factor enzyme 1 KW548_08190 PF03372 Endonuclease/Exonuclease/phosphatase family KW548_08195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW548_08195 PF00672 HAMP domain KW548_08200 PF08007 Cupin superfamily protein KW548_08205 PF10689 Protein of unknown function (DUF2496) KW548_08215 PF01925 Sulfite exporter TauE/SafE KW548_08220 PF13307 Helicase C-terminal domain KW548_08220 PF06733 DEAD_2 KW548_08225 PF13609 Gram-negative porin KW548_08230 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) KW548_08235 PF00202 Aminotransferase class-III KW548_08240 PF04055 Radical SAM superfamily KW548_08240 PF06968 Biotin and Thiamin Synthesis associated domain KW548_08245 PF00155 Aminotransferase class I and II KW548_08250 PF12697 Alpha/beta hydrolase family KW548_08250 PF08241 Methyltransferase domain KW548_08275 PF00106 short chain dehydrogenase KW548_08300 PF16036 Chalcone isomerase-like KW548_08310 PF08328 Adenylosuccinate lyase C-terminal KW548_08310 PF00206 Lyase KW548_08315 PF04356 Protein of unknown function (DUF489) KW548_08330 PF00294 pfkB family carbohydrate kinase KW548_08335 PF00816 H-NS histone family KW548_08340 PF03553 Na+/H+ antiporter family KW548_08350 PF00815 Histidinol dehydrogenase KW548_08355 PF00155 Aminotransferase class I and II KW548_08360 PF08645 Polynucleotide kinase 3 phosphatase KW548_08360 PF00475 Imidazoleglycerol-phosphate dehydratase KW548_08365 PF00117 Glutamine amidotransferase class-I KW548_08370 PF00977 Histidine biosynthesis protein KW548_08375 PF00977 Histidine biosynthesis protein KW548_08380 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase KW548_08380 PF01502 Phosphoribosyl-AMP cyclohydrolase KW548_08385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW548_08385 PF12729 Four helix bundle sensory module for signal transduction KW548_08385 PF00672 HAMP domain KW548_08390 PF01168 Alanine racemase, N-terminal domain KW548_08390 PF00842 Alanine racemase, C-terminal domain KW548_08400 PF02833 DHHA2 domain KW548_08400 PF01368 DHH family KW548_08415 PF00005 ABC transporter KW548_08420 PF00005 ABC transporter KW548_08420 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KW548_08430 PF00528 Binding-protein-dependent transport system inner membrane component KW548_08435 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KW548_08440 PF02954 Bacterial regulatory protein, Fis family KW548_08440 PF00158 Sigma-54 interaction domain KW548_08445 PF04012 PspA/IM30 family KW548_08450 PF06667 Phage shock protein B KW548_08455 PF04024 PspC domain KW548_08460 PF00529 HlyD membrane-fusion protein of T1SS KW548_08460 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KW548_08465 PF13533 Biotin-lipoyl like KW548_08475 PF03352 Methyladenine glycosylase KW548_08480 PF03280 Proteobacterial lipase chaperone protein KW548_08485 PF00561 alpha/beta hydrolase fold KW548_08490 PF01053 Cys/Met metabolism PLP-dependent enzyme KW548_08495 PF13091 PLD-like domain KW548_08495 PF13396 Phospholipase_D-nuclease N-terminal KW548_08505 PF00849 RNA pseudouridylate synthase KW548_08510 PF10672 S-adenosylmethionine-dependent methyltransferase KW548_08510 PF17785 PUA-like domain KW548_08520 PF01066 CDP-alcohol phosphatidyltransferase KW548_08525 PF00005 ABC transporter KW548_08530 PF00528 Binding-protein-dependent transport system inner membrane component KW548_08545 PF06945 Protein of unknown function (DUF1289) KW548_08560 PF03795 YCII-related domain KW548_08565 PF03061 Thioesterase superfamily KW548_08580 PF00072 Response regulator receiver domain KW548_08580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW548_08585 PF00216 Bacterial DNA-binding protein KW548_08590 PF04269 Protein of unknown function, DUF440 KW548_08595 PF01132 Elongation factor P (EF-P) OB domain KW548_08595 PF08207 Elongation factor P (EF-P) KOW-like domain KW548_08595 PF09285 Elongation factor P, C-terminal KW548_08605 PF16458 Beta-prism lectin KW548_08605 PF12563 Hemolytic toxin N terminal KW548_08605 PF07968 Leukocidin/Hemolysin toxin family KW548_08635 PF00196 Bacterial regulatory proteins, luxR family KW548_08635 PF00072 Response regulator receiver domain KW548_08645 PF01066 CDP-alcohol phosphatidyltransferase KW548_08670 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KW548_08680 PF07995 Glucose / Sorbosone dehydrogenase KW548_08705 PF01409 tRNA synthetases class II core domain (F) KW548_08705 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain KW548_08710 PF01588 Putative tRNA binding domain KW548_08710 PF03147 Ferredoxin-fold anticodon binding domain KW548_08710 PF03484 tRNA synthetase B5 domain KW548_08710 PF03483 B3/4 domain KW548_08710 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain KW548_08740 PF00367 phosphotransferase system, EIIB KW548_08740 PF02378 Phosphotransferase system, EIIC KW548_08745 PF00356 Bacterial regulatory proteins, lacI family KW548_08755 PF08244 Glycosyl hydrolases family 32 C terminal KW548_08755 PF00251 Glycosyl hydrolases family 32 N-terminal domain KW548_08760 PF00294 pfkB family carbohydrate kinase KW548_08765 PF13407 Periplasmic binding protein domain KW548_08765 PF00356 Bacterial regulatory proteins, lacI family KW548_08775 PF01554 MatE KW548_08780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_08780 PF03466 LysR substrate binding domain KW548_08785 PF01565 FAD binding domain KW548_08785 PF09330 D-lactate dehydrogenase, membrane binding KW548_08790 PF00440 Bacterial regulatory proteins, tetR family KW548_08810 PF12848 ABC transporter KW548_08810 PF16326 ABC transporter C-terminal domain KW548_08810 PF00005 ABC transporter KW548_08820 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KW548_08825 PF00873 AcrB/AcrD/AcrF family KW548_08835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW548_08835 PF00512 His Kinase A (phospho-acceptor) domain KW548_08835 PF08521 Two-component sensor kinase N-terminal KW548_08845 PF13276 HTH-like domain KW548_08845 PF00665 Integrase core domain KW548_08845 PF13333 Integrase core domain KW548_08860 PF02581 Thiamine monophosphate synthase KW548_08865 PF02074 Carboxypeptidase Taq (M32) metallopeptidase KW548_08870 PF01810 LysE type translocator KW548_08875 PF01235 Sodium:alanine symporter family KW548_08935 PF02264 LamB porin KW548_08940 PF01121 Dephospho-CoA kinase KW548_08950 PF13673 Acetyltransferase (GNAT) domain KW548_08950 PF13302 Acetyltransferase (GNAT) domain KW548_08950 PF03352 Methyladenine glycosylase KW548_08950 PF00117 Glutamine amidotransferase class-I KW548_08950 PF00958 GMP synthase C terminal domain KW548_08955 PF01327 Polypeptide deformylase KW548_08965 PF07690 Major Facilitator Superfamily KW548_08970 PF13533 Biotin-lipoyl like KW548_08975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_08975 PF03466 LysR substrate binding domain KW548_08985 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KW548_08995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_08995 PF03466 LysR substrate binding domain KW548_09005 PF01032 FecCD transport family KW548_09010 PF00005 ABC transporter KW548_09015 PF03059 Nicotianamine synthase protein KW548_09025 PF00892 EamA-like transporter family KW548_09080 PF00579 tRNA synthetases class I (W and Y) KW548_09120 PF07715 TonB-dependent Receptor Plug Domain KW548_09120 PF00593 TonB dependent receptor KW548_09125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_09125 PF03466 LysR substrate binding domain KW548_09130 PF02368 Bacterial Ig-like domain (group 2) KW548_09130 PF11999 Protein of unknown function (DUF3494) KW548_09135 PF11999 Protein of unknown function (DUF3494) KW548_09135 PF02368 Bacterial Ig-like domain (group 2) KW548_09220 PF00665 Integrase core domain KW548_09240 PF01386 Ribosomal L25p family KW548_09245 PF00535 Glycosyl transferase family 2 KW548_09265 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KW548_09275 PF00072 Response regulator receiver domain KW548_09275 PF00486 Transcriptional regulatory protein, C terminal KW548_09295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW548_09300 PF00072 Response regulator receiver domain KW548_09300 PF00486 Transcriptional regulatory protein, C terminal KW548_09310 PF00271 Helicase conserved C-terminal domain KW548_09310 PF04851 Type III restriction enzyme, res subunit KW548_09315 PF00849 RNA pseudouridylate synthase KW548_09315 PF01479 S4 domain KW548_09320 PF07690 Major Facilitator Superfamily KW548_09335 PF01554 MatE KW548_09340 PF00005 ABC transporter KW548_09345 PF02687 FtsX-like permease family KW548_09345 PF12704 MacB-like periplasmic core domain KW548_09355 PF06965 Na+/H+ antiporter 1 KW548_09360 PF03422 Carbohydrate binding module (family 6) KW548_09360 PF02412 Thrombospondin type 3 repeat KW548_09375 PF00202 Aminotransferase class-III KW548_09380 PF16653 Saccharopine dehydrogenase C-terminal domain KW548_09380 PF03435 Saccharopine dehydrogenase NADP binding domain KW548_09385 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain KW548_09400 PF00994 Probable molybdopterin binding domain KW548_09410 PF00111 2Fe-2S iron-sulfur cluster binding domain KW548_09415 PF00268 Ribonucleotide reductase, small chain KW548_09420 PF02867 Ribonucleotide reductase, barrel domain KW548_09420 PF03477 ATP cone domain KW548_09420 PF00317 Ribonucleotide reductase, all-alpha domain KW548_09430 PF03989 DNA gyrase C-terminal domain, beta-propeller KW548_09430 PF00521 DNA gyrase/topoisomerase IV, subunit A KW548_09435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW548_09435 PF00672 HAMP domain KW548_09435 PF02743 Cache domain KW548_09445 PF04055 Radical SAM superfamily KW548_09470 PF01259 SAICAR synthetase KW548_09485 PF00753 Metallo-beta-lactamase superfamily KW548_09490 PF00072 Response regulator receiver domain KW548_09490 PF00486 Transcriptional regulatory protein, C terminal KW548_09505 PF01618 MotA/TolQ/ExbB proton channel family KW548_09510 PF01618 MotA/TolQ/ExbB proton channel family KW548_09515 PF02472 Biopolymer transport protein ExbD/TolR KW548_09530 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain KW548_09530 PF17203 Single cache domain 3 KW548_09530 PF00989 PAS fold KW548_09530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW548_09535 PF12431 Transcriptional regulator KW548_09535 PF00072 Response regulator receiver domain KW548_09555 PF08448 PAS fold KW548_09555 PF00990 Diguanylate cyclase, GGDEF domain KW548_09575 PF01794 Ferric reductase like transmembrane component KW548_09585 PF01278 Omptin family KW548_09595 PF11922 Domain of unknown function (DUF3440) KW548_09595 PF01507 Phosphoadenosine phosphosulfate reductase family KW548_09600 PF02195 ParB-like nuclease domain KW548_09610 PF00072 Response regulator receiver domain KW548_09610 PF00486 Transcriptional regulatory protein, C terminal KW548_09615 PF00512 His Kinase A (phospho-acceptor) domain KW548_09615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW548_09615 PF00672 HAMP domain KW548_09620 PF06629 MltA-interacting protein MipA KW548_09630 PF01212 Beta-eliminating lyase KW548_09640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_09640 PF03466 LysR substrate binding domain KW548_09655 PF13556 PucR C-terminal helix-turn-helix domain KW548_09655 PF17853 GGDEF-like domain KW548_09655 PF05651 Putative sugar diacid recognition KW548_09660 PF02595 Glycerate kinase family KW548_09670 PF00005 ABC transporter KW548_09675 PF01497 Periplasmic binding protein KW548_09685 PF00005 ABC transporter KW548_09690 PF03621 MbtH-like protein KW548_09700 PF00501 AMP-binding enzyme KW548_09700 PF00668 Condensation domain KW548_09700 PF13193 AMP-binding enzyme C-terminal domain KW548_09700 PF00550 Phosphopantetheine attachment site KW548_09705 PF00593 TonB dependent receptor KW548_09705 PF07715 TonB-dependent Receptor Plug Domain KW548_09715 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) KW548_09745 PF02397 Bacterial sugar transferase KW548_09755 PF00534 Glycosyl transferases group 1 KW548_09755 PF13439 Glycosyltransferase Family 4 KW548_09800 PF02954 Bacterial regulatory protein, Fis family KW548_09800 PF00072 Response regulator receiver domain KW548_09800 PF00158 Sigma-54 interaction domain KW548_09805 PF17149 Periplasmic sensor domain found in signal transduction proteins KW548_09805 PF00072 Response regulator receiver domain KW548_09805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW548_09805 PF00512 His Kinase A (phospho-acceptor) domain KW548_09805 PF01627 Hpt domain KW548_09805 PF00672 HAMP domain KW548_09845 PF01554 MatE KW548_09850 PF00677 Lumazine binding domain KW548_09870 PF00877 NlpC/P60 family KW548_09875 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW548_09875 PF00672 HAMP domain KW548_09875 PF12729 Four helix bundle sensory module for signal transduction KW548_09885 PF03942 DTW domain KW548_09905 PF03454 MoeA C-terminal region (domain IV) KW548_09905 PF03453 MoeA N-terminal region (domain I and II) KW548_09905 PF00994 Probable molybdopterin binding domain KW548_09910 PF12804 MobA-like NTP transferase domain KW548_09925 PF04542 Sigma-70 region 2 KW548_09925 PF08281 Sigma-70, region 4 KW548_09935 PF12848 ABC transporter KW548_09935 PF00005 ABC transporter KW548_09970 PF01645 Conserved region in glutamate synthase KW548_09995 PF03466 LysR substrate binding domain KW548_09995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_10005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_10005 PF03466 LysR substrate binding domain KW548_10010 PF01551 Peptidase family M23 KW548_10075 PF02743 Cache domain KW548_10075 PF00672 HAMP domain KW548_10075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW548_10080 PF02146 Sir2 family KW548_10085 PF17155 Gammaproteobacterial periplasmic sensor domain KW548_10085 PF00990 Diguanylate cyclase, GGDEF domain KW548_10090 PF13416 Bacterial extracellular solute-binding protein KW548_10095 PF13416 Bacterial extracellular solute-binding protein KW548_10100 PF00528 Binding-protein-dependent transport system inner membrane component KW548_10105 PF00528 Binding-protein-dependent transport system inner membrane component KW548_10110 PF00005 ABC transporter KW548_10110 PF08402 TOBE domain KW548_10130 PF01171 PP-loop family KW548_10135 PF00582 Universal stress protein family KW548_10140 PF00027 Cyclic nucleotide-binding domain KW548_10140 PF13545 Crp-like helix-turn-helix domain KW548_10155 PF00403 Heavy-metal-associated domain KW548_10165 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KW548_10165 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP KW548_10190 PF00813 FliP family KW548_10195 PF01313 Bacterial export proteins, family 3 KW548_10200 PF01311 Bacterial export proteins, family 1 KW548_10205 PF01312 FlhB HrpN YscU SpaS Family KW548_10210 PF00196 Bacterial regulatory proteins, luxR family KW548_10210 PF00072 Response regulator receiver domain KW548_10225 PF03958 Bacterial type II/III secretion system short domain KW548_10225 PF00263 Bacterial type II and III secretion system protein KW548_10260 PF04888 Secretion system effector C (SseC) like family KW548_10305 PF12833 Helix-turn-helix domain KW548_10325 PF01514 Secretory protein of YscJ/FliF family KW548_10345 PF05932 Tir chaperone protein (CesT) family KW548_10375 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KW548_10375 PF02874 ATP synthase alpha/beta family, beta-barrel domain KW548_10375 PF18269 T3SS EscN ATPase C-terminal domain KW548_10395 PF07968 Leukocidin/Hemolysin toxin family KW548_10395 PF00652 Ricin-type beta-trefoil lectin domain KW548_10410 PF04030 D-arabinono-1,4-lactone oxidase KW548_10410 PF01565 FAD binding domain KW548_10425 PF00842 Alanine racemase, C-terminal domain KW548_10425 PF01168 Alanine racemase, N-terminal domain KW548_10610 PF00563 EAL domain KW548_10610 PF00990 Diguanylate cyclase, GGDEF domain KW548_10610 PF03707 Bacterial signalling protein N terminal repeat KW548_10645 PF06303 MatP N-terminal domain KW548_10645 PF17414 MatP C-terminal ribbon-helix-helix domain KW548_10650 PF13654 AAA domain KW548_10650 PF05362 Lon protease (S16) C-terminal proteolytic domain KW548_10655 PF07977 FabA-like domain KW548_10660 PF04957 Ribosome modulation factor KW548_10670 PF16326 ABC transporter C-terminal domain KW548_10670 PF12848 ABC transporter KW548_10670 PF00005 ABC transporter KW548_10685 PF07126 Cell-division protein ZapC KW548_10690 PF01180 Dihydroorotate dehydrogenase KW548_10695 PF05088 Bacterial NAD-glutamate dehydrogenase KW548_10705 PF01433 Peptidase family M1 domain KW548_10705 PF11940 Domain of unknown function (DUF3458) Ig-like fold KW548_10705 PF17432 Domain of unknown function (DUF3458_C) ARM repeats KW548_10715 PF03572 Peptidase family S41 KW548_10715 PF17804 Tail specific protease N-terminal domain KW548_10715 PF11818 C-terminal domain of tail specific protease (DUF3340) KW548_10715 PF00595 PDZ domain KW548_10720 PF04352 ProQ/FINO family KW548_10720 PF17516 ProQ C-terminal domain KW548_10725 PF13185 GAF domain KW548_10730 PF00664 ABC transporter transmembrane region KW548_10730 PF00005 ABC transporter KW548_10735 PF04403 Paraquat-inducible protein A KW548_10740 PF02470 MlaD protein KW548_10745 PF01189 16S rRNA methyltransferase RsmB/F KW548_10745 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF KW548_10745 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF KW548_10765 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain KW548_10765 PF00391 PEP-utilising enzyme, mobile domain KW548_10765 PF02896 PEP-utilising enzyme, TIM barrel domain KW548_10770 PF00793 DAHP synthetase I family KW548_10775 PF04461 Protein of unknown function (DUF520) KW548_10780 PF10414 Sirohaem synthase dimerisation region KW548_10780 PF14824 Sirohaem biosynthesis protein central KW548_10780 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KW548_10785 PF00497 Bacterial extracellular solute-binding proteins, family 3 KW548_10790 PF00528 Binding-protein-dependent transport system inner membrane component KW548_10800 PF00005 ABC transporter KW548_10805 PF01027 Inhibitor of apoptosis-promoting Bax1 KW548_10810 PF04358 DsrC like protein KW548_10835 PF00691 OmpA family KW548_10835 PF05736 OprF membrane domain KW548_10850 PF04055 Radical SAM superfamily KW548_10870 PF16177 Acetyl-coenzyme A synthetase N-terminus KW548_10870 PF00501 AMP-binding enzyme KW548_10870 PF13193 AMP-binding enzyme C-terminal domain KW548_10875 PF04303 PrpF protein KW548_10880 PF00330 Aconitase family (aconitate hydratase) KW548_10880 PF00694 Aconitase C-terminal domain KW548_10905 PF06715 Gp5 C-terminal repeat (3 copies) KW548_10905 PF04717 Type VI secretion system, phage-baseplate injector KW548_10935 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath KW548_10960 PF07724 AAA domain (Cdc48 subfamily) KW548_10960 PF00004 ATPase family associated with various cellular activities (AAA) KW548_10960 PF10431 C-terminal, D2-small domain, of ClpB protein KW548_10960 PF17871 AAA lid domain KW548_11005 PF00069 Protein kinase domain KW548_11020 PF01970 Tripartite tricarboxylate transporter TctA family KW548_11060 PF04204 Homoserine O-succinyltransferase KW548_11065 PF12697 Alpha/beta hydrolase family KW548_11075 PF05971 RNA methyltransferase KW548_11085 PF01863 Protein of unknown function DUF45 KW548_11095 PF09308 LuxQ, periplasmic KW548_11095 PF00512 His Kinase A (phospho-acceptor) domain KW548_11095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW548_11095 PF00072 Response regulator receiver domain KW548_11105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_11105 PF03466 LysR substrate binding domain KW548_11110 PF07690 Major Facilitator Superfamily KW548_11120 PF00990 Diguanylate cyclase, GGDEF domain KW548_11130 PF00005 ABC transporter KW548_11140 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family KW548_11155 PF13460 NAD(P)H-binding KW548_11160 PF00375 Sodium:dicarboxylate symporter family KW548_11200 PF00929 Exonuclease KW548_11200 PF08411 Exonuclease C-terminal KW548_11205 PF03788 LrgA family KW548_11210 PF04172 LrgB-like family KW548_11215 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KW548_11215 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region KW548_11220 PF11871 Domain of unknown function (DUF3391) KW548_11220 PF01966 HD domain KW548_11265 PF07070 SpoOM protein KW548_11270 PF00392 Bacterial regulatory proteins, gntR family KW548_11270 PF07702 UTRA domain KW548_11275 PF01979 Amidohydrolase family KW548_11280 PF00491 Arginase family KW548_11285 PF01175 Urocanase Rossmann-like domain KW548_11285 PF17392 Urocanase C-terminal domain KW548_11285 PF17391 Urocanase N-terminal domain KW548_11290 PF00221 Aromatic amino acid lyase KW548_11300 PF04191 Phospholipid methyltransferase KW548_11320 PF13488 Glycine zipper KW548_11320 PF00691 OmpA family KW548_11335 PF14497 Glutathione S-transferase, C-terminal domain KW548_11335 PF02798 Glutathione S-transferase, N-terminal domain KW548_11345 PF04209 homogentisate 1,2-dioxygenase KW548_11350 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KW548_11380 PF13302 Acetyltransferase (GNAT) domain KW548_11385 PF13673 Acetyltransferase (GNAT) domain KW548_11450 PF08212 Lipocalin-like domain KW548_11485 PF03831 PhnA domain KW548_11485 PF08274 PhnA Zinc-Ribbon KW548_11495 PF09905 DNA-binding protein VF530 KW548_11500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_11500 PF03466 LysR substrate binding domain KW548_11505 PF02798 Glutathione S-transferase, N-terminal domain KW548_11510 PF17848 Acetyl-coA carboxylase zinc finger domain KW548_11510 PF01039 Carboxyl transferase domain KW548_11515 PF03466 LysR substrate binding domain KW548_11515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_11525 PF00710 Asparaginase, N-terminal KW548_11525 PF17763 Glutaminase/Asparaginase C-terminal domain KW548_11535 PF14535 AMP-binding enzyme C-terminal domain KW548_11535 PF00501 AMP-binding enzyme KW548_11545 PF07690 Major Facilitator Superfamily KW548_11550 PF02668 Taurine catabolism dioxygenase TauD, TfdA family KW548_11555 PF07690 Major Facilitator Superfamily KW548_11560 PF02515 CoA-transferase family III KW548_11570 PF00355 Rieske [2Fe-2S] domain KW548_11570 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KW548_11595 PF00128 Alpha amylase, catalytic domain KW548_11595 PF02806 Alpha amylase, C-terminal all-beta domain KW548_11610 PF05853 beta-keto acid cleavage enzyme KW548_11665 PF04073 Aminoacyl-tRNA editing domain KW548_11670 PF00293 NUDIX domain KW548_11675 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KW548_11695 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KW548_11710 PF00588 SpoU rRNA Methylase family KW548_11710 PF08032 RNA 2'-O ribose methyltransferase substrate binding KW548_11725 PF00491 Arginase family KW548_11735 PF00291 Pyridoxal-phosphate dependent enzyme KW548_11745 PF00106 short chain dehydrogenase KW548_11780 PF13302 Acetyltransferase (GNAT) domain KW548_11800 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) KW548_11825 PF01810 LysE type translocator KW548_11925 PF11999 Protein of unknown function (DUF3494) KW548_11925 PF02368 Bacterial Ig-like domain (group 2) KW548_11930 PF01810 LysE type translocator KW548_11980 PF00072 Response regulator receiver domain KW548_11980 PF00486 Transcriptional regulatory protein, C terminal KW548_12040 PF00892 EamA-like transporter family KW548_12070 PF00210 Ferritin-like domain KW548_12075 PF01734 Patatin-like phospholipase KW548_12085 PF00072 Response regulator receiver domain KW548_12085 PF00196 Bacterial regulatory proteins, luxR family KW548_12090 PF07730 Histidine kinase KW548_12090 PF17200 Single Cache domain 2 KW548_12095 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component KW548_12105 PF03480 Bacterial extracellular solute-binding protein, family 7 KW548_12120 PF00753 Metallo-beta-lactamase superfamily KW548_12125 PF05951 Bacterial protein of unknown function (DUF882) KW548_12130 PF01471 Putative peptidoglycan binding domain KW548_12130 PF03734 L,D-transpeptidase catalytic domain KW548_12155 PF00925 GTP cyclohydrolase II KW548_12175 PF08264 Anticodon-binding domain of tRNA KW548_12175 PF00133 tRNA synthetases class I (I, L, M and V) KW548_12175 PF09334 tRNA synthetases class I (M) KW548_12240 PF13302 Acetyltransferase (GNAT) domain KW548_12250 PF05128 Domain of unknown function (DUF697) KW548_12255 PF04317 YcjX-like family, DUF463 KW548_12275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW548_12275 PF00512 His Kinase A (phospho-acceptor) domain KW548_12275 PF09308 LuxQ, periplasmic KW548_12275 PF00072 Response regulator receiver domain KW548_12285 PF00293 NUDIX domain KW548_12290 PF03222 Tryptophan/tyrosine permease family KW548_12295 PF03313 Serine dehydratase alpha chain KW548_12295 PF03315 Serine dehydratase beta chain KW548_12300 PF03222 Tryptophan/tyrosine permease family KW548_12305 PF01242 6-pyruvoyl tetrahydropterin synthase KW548_12310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW548_12310 PF00672 HAMP domain KW548_12310 PF12729 Four helix bundle sensory module for signal transduction KW548_12315 PF00152 tRNA synthetases class II (D, K and N) KW548_12315 PF01336 OB-fold nucleic acid binding domain KW548_12335 PF01966 HD domain KW548_12335 PF00672 HAMP domain KW548_12340 PF00155 Aminotransferase class I and II KW548_12355 PF00270 DEAD/DEAH box helicase KW548_12355 PF11898 Domain of unknown function (DUF3418) KW548_12355 PF04408 Helicase associated domain (HA2) KW548_12355 PF00271 Helicase conserved C-terminal domain KW548_12355 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold KW548_12360 PF00390 Malic enzyme, N-terminal domain KW548_12360 PF03949 Malic enzyme, NAD binding domain KW548_12370 PF02698 DUF218 domain KW548_12380 PF05193 Peptidase M16 inactive domain KW548_12380 PF00675 Insulinase (Peptidase family M16) KW548_12410 PF07992 Pyridine nucleotide-disulphide oxidoreductase KW548_12415 PF00664 ABC transporter transmembrane region KW548_12415 PF00005 ABC transporter KW548_12425 PF02567 Phenazine biosynthesis-like protein KW548_12430 PF00849 RNA pseudouridylate synthase KW548_12430 PF01479 S4 domain KW548_12435 PF00990 Diguanylate cyclase, GGDEF domain KW548_12435 PF00563 EAL domain KW548_12435 PF03707 Bacterial signalling protein N terminal repeat KW548_12445 PF01300 Telomere recombination KW548_12450 PF02811 PHP domain KW548_12455 PF08056 Tryptophan operon leader peptide KW548_12460 PF04715 Anthranilate synthase component I, N terminal region KW548_12460 PF00425 chorismate binding enzyme KW548_12465 PF00117 Glutamine amidotransferase class-I KW548_12470 PF02885 Glycosyl transferase family, helical bundle domain KW548_12470 PF00591 Glycosyl transferase family, a/b domain KW548_12475 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase KW548_12475 PF00218 Indole-3-glycerol phosphate synthase KW548_12480 PF00291 Pyridoxal-phosphate dependent enzyme KW548_12485 PF00290 Tryptophan synthase alpha chain KW548_12490 PF00375 Sodium:dicarboxylate symporter family KW548_12500 PF00270 DEAD/DEAH box helicase KW548_12500 PF11898 Domain of unknown function (DUF3418) KW548_12500 PF04408 Helicase associated domain (HA2) KW548_12500 PF00271 Helicase conserved C-terminal domain KW548_12500 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold KW548_12535 PF00012 Hsp70 protein KW548_12555 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term KW548_12555 PF12833 Helix-turn-helix domain KW548_12565 PF04116 Fatty acid hydroxylase superfamily KW548_12575 PF02627 Carboxymuconolactone decarboxylase family KW548_12595 PF01323 DSBA-like thioredoxin domain KW548_12605 PF01047 MarR family KW548_12610 PF02566 OsmC-like protein KW548_12615 PF08267 Cobalamin-independent synthase, N-terminal domain KW548_12615 PF01717 Cobalamin-independent synthase, Catalytic domain KW548_12645 PF12729 Four helix bundle sensory module for signal transduction KW548_12645 PF00672 HAMP domain KW548_12645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW548_12650 PF00266 Aminotransferase class-V KW548_12660 PF00512 His Kinase A (phospho-acceptor) domain KW548_12660 PF00497 Bacterial extracellular solute-binding proteins, family 3 KW548_12660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW548_12675 PF04994 TfoX C-terminal domain KW548_12675 PF04993 TfoX N-terminal domain KW548_12685 PF03956 Lysine exporter LysO KW548_12695 PF00282 Pyridoxal-dependent decarboxylase conserved domain KW548_12700 PF01418 Helix-turn-helix domain, rpiR family KW548_12700 PF01380 SIS domain KW548_12705 PF00171 Aldehyde dehydrogenase family KW548_12705 PF00465 Iron-containing alcohol dehydrogenase KW548_12715 PF00462 Glutaredoxin KW548_12720 PF06826 Predicted Permease Membrane Region KW548_12720 PF02080 TrkA-C domain KW548_12725 PF00528 Binding-protein-dependent transport system inner membrane component KW548_12730 PF00528 Binding-protein-dependent transport system inner membrane component KW548_12735 PF00497 Bacterial extracellular solute-binding proteins, family 3 KW548_12740 PF00005 ABC transporter KW548_12750 PF01228 Glycine radical KW548_12750 PF02901 Pyruvate formate lyase-like KW548_12760 PF00672 HAMP domain KW548_12760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW548_12775 PF03887 YfbU domain KW548_12780 PF06629 MltA-interacting protein MipA KW548_12785 PF08298 PrkA AAA domain KW548_12785 PF06798 PrkA serine protein kinase C-terminal domain KW548_12795 PF04293 SpoVR like protein KW548_12800 PF02348 Cytidylyltransferase KW548_12805 PF03966 Trm112p-like protein KW548_12810 PF02606 Tetraacyldisaccharide-1-P 4'-kinase KW548_12815 PF00664 ABC transporter transmembrane region KW548_12815 PF00005 ABC transporter KW548_12830 PF02687 FtsX-like permease family KW548_12830 PF12704 MacB-like periplasmic core domain KW548_12835 PF00005 ABC transporter KW548_12850 PF17757 UvrB interaction domain KW548_12850 PF00271 Helicase conserved C-terminal domain KW548_12850 PF03461 TRCF domain KW548_12850 PF02559 CarD-like/TRCF domain KW548_12850 PF00270 DEAD/DEAH box helicase KW548_12870 PF05728 Uncharacterised protein family (UPF0227) KW548_12895 PF01230 HIT domain KW548_12910 PF07840 FadR C-terminal domain KW548_12910 PF00392 Bacterial regulatory proteins, gntR family KW548_12915 PF06450 Bacterial Na+/H+ antiporter B (NhaB) KW548_12920 PF02600 Disulfide bond formation protein DsbB KW548_12925 PF13491 4TM region of DNA translocase FtsK/SpoIIIE KW548_12925 PF17854 FtsK alpha domain KW548_12925 PF09397 Ftsk gamma domain KW548_12925 PF01580 FtsK/SpoIIIE family KW548_12930 PF01037 Lrp/AsnC ligand binding domain KW548_12935 PF05222 Alanine dehydrogenase/PNT, N-terminal domain KW548_12935 PF01262 Alanine dehydrogenase/PNT, C-terminal domain KW548_12940 PF04217 Protein of unknown function, DUF412 KW548_12945 PF00871 Acetokinase family KW548_12950 PF07085 DRTGG domain KW548_12950 PF01515 Phosphate acetyl/butaryl transferase KW548_12960 PF13409 Glutathione S-transferase, N-terminal domain KW548_12965 PF00005 ABC transporter KW548_12965 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KW548_12970 PF00005 ABC transporter KW548_12970 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KW548_12975 PF00528 Binding-protein-dependent transport system inner membrane component KW548_12975 PF12911 N-terminal TM domain of oligopeptide transport permease C KW548_12980 PF00528 Binding-protein-dependent transport system inner membrane component KW548_12995 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) KW548_13000 PF00990 Diguanylate cyclase, GGDEF domain KW548_13015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW548_13015 PF00672 HAMP domain KW548_13015 PF02743 Cache domain KW548_13020 PF04389 Peptidase family M28 KW548_13020 PF04151 Bacterial pre-peptidase C-terminal domain KW548_13025 PF05922 Peptidase inhibitor I9 KW548_13025 PF00082 Subtilase family KW548_13025 PF04151 Bacterial pre-peptidase C-terminal domain KW548_13030 PF00672 HAMP domain KW548_13030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW548_13030 PF02743 Cache domain KW548_13050 PF00005 ABC transporter KW548_13050 PF02687 FtsX-like permease family KW548_13050 PF12704 MacB-like periplasmic core domain KW548_13055 PF00005 ABC transporter KW548_13055 PF02687 FtsX-like permease family KW548_13055 PF12704 MacB-like periplasmic core domain KW548_13070 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KW548_13075 PF02868 Thermolysin metallopeptidase, alpha-helical domain KW548_13075 PF04151 Bacterial pre-peptidase C-terminal domain KW548_13075 PF03413 Peptidase propeptide and YPEB domain KW548_13075 PF07504 Fungalysin/Thermolysin Propeptide Motif KW548_13075 PF01447 Thermolysin metallopeptidase, catalytic domain KW548_13105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_13105 PF03466 LysR substrate binding domain KW548_13130 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain KW548_13130 PF02951 Prokaryotic glutathione synthetase, N-terminal domain KW548_13155 PF01471 Putative peptidoglycan binding domain KW548_13155 PF04717 Type VI secretion system, phage-baseplate injector KW548_13200 PF01471 Putative peptidoglycan binding domain KW548_13200 PF04717 Type VI secretion system, phage-baseplate injector KW548_13210 PF01648 4'-phosphopantetheinyl transferase superfamily KW548_13210 PF17837 4'-phosphopantetheinyl transferase N-terminal domain KW548_13215 PF00550 Phosphopantetheine attachment site KW548_13215 PF00668 Condensation domain KW548_13215 PF00501 AMP-binding enzyme KW548_13215 PF00975 Thioesterase domain KW548_13215 PF13193 AMP-binding enzyme C-terminal domain KW548_13220 PF00668 Condensation domain KW548_13220 PF13193 AMP-binding enzyme C-terminal domain KW548_13220 PF00550 Phosphopantetheine attachment site KW548_13220 PF00975 Thioesterase domain KW548_13220 PF00501 AMP-binding enzyme KW548_13225 PF00501 AMP-binding enzyme KW548_13225 PF13193 AMP-binding enzyme C-terminal domain KW548_13225 PF00668 Condensation domain KW548_13225 PF00550 Phosphopantetheine attachment site KW548_13225 PF00975 Thioesterase domain KW548_13230 PF00501 AMP-binding enzyme KW548_13230 PF13193 AMP-binding enzyme C-terminal domain KW548_13230 PF00668 Condensation domain KW548_13230 PF07993 Male sterility protein KW548_13230 PF00550 Phosphopantetheine attachment site KW548_13245 PF00313 'Cold-shock' DNA-binding domain KW548_13265 PF18766 SWI2/SNF2 ATPase KW548_13265 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) KW548_13265 PF11867 Domain of unknown function (DUF3387) KW548_13275 PF01420 Type I restriction modification DNA specificity domain KW548_13280 PF02384 N-6 DNA Methylase KW548_13285 PF02899 Phage integrase, N-terminal SAM-like domain KW548_13285 PF00589 Phage integrase family KW548_13315 PF00990 Diguanylate cyclase, GGDEF domain KW548_13325 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KW548_13330 PF09619 Type III secretion system lipoprotein chaperone (YscW) KW548_13375 PF03601 Conserved hypothetical protein 698 KW548_13385 PF00501 AMP-binding enzyme KW548_13385 PF13193 AMP-binding enzyme C-terminal domain KW548_13390 PF13378 Enolase C-terminal domain-like KW548_13400 PF12697 Alpha/beta hydrolase family KW548_13405 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KW548_13405 PF16582 Middle domain of thiamine pyrophosphate KW548_13405 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KW548_13410 PF00425 chorismate binding enzyme KW548_13415 PF00155 Aminotransferase class I and II KW548_13495 PF12161 HsdM N-terminal domain KW548_13495 PF02384 N-6 DNA Methylase KW548_13550 PF01966 HD domain KW548_13550 PF13286 Phosphohydrolase-associated domain KW548_13555 PF00962 Adenosine/AMP deaminase KW548_13580 PF00106 short chain dehydrogenase KW548_13595 PF01336 OB-fold nucleic acid binding domain KW548_13595 PF07733 Bacterial DNA polymerase III alpha NTPase domain KW548_13595 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KW548_13595 PF14579 Helix-hairpin-helix motif KW548_13595 PF02811 PHP domain KW548_13600 PF01584 CheW-like domain KW548_13600 PF00072 Response regulator receiver domain KW548_13605 PF00480 ROK family KW548_13630 PF00209 Sodium:neurotransmitter symporter family KW548_13645 PF00367 phosphotransferase system, EIIB KW548_13645 PF02378 Phosphotransferase system, EIIC KW548_13650 PF01026 TatD related DNase KW548_13655 PF09115 DNA polymerase III, delta subunit, C terminal KW548_13660 PF02223 Thymidylate kinase KW548_13665 PF02618 YceG-like family KW548_13670 PF01063 Amino-transferase class IV KW548_13675 PF02801 Beta-ketoacyl synthase, C-terminal domain KW548_13675 PF00109 Beta-ketoacyl synthase, N-terminal domain KW548_13680 PF00550 Phosphopantetheine attachment site KW548_13690 PF00698 Acyl transferase domain KW548_13695 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KW548_13695 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KW548_13700 PF02504 Fatty acid synthesis protein KW548_13705 PF01783 Ribosomal L32p protein family KW548_13710 PF02620 Large ribosomal RNA subunit accumulation protein YceD KW548_13715 PF02545 Maf-like protein KW548_13720 PF01479 S4 domain KW548_13720 PF00849 RNA pseudouridylate synthase KW548_13725 PF12111 Polyribonucleotide phosphorylase C terminal KW548_13725 PF00575 S1 RNA binding domain KW548_13725 PF10150 Ribonuclease E/G family KW548_13730 PF01740 STAS domain KW548_13730 PF00916 Sulfate permease family KW548_13735 PF01612 3'-5' exonuclease KW548_13735 PF00570 HRDC domain KW548_13740 PF00501 AMP-binding enzyme KW548_13740 PF13193 AMP-binding enzyme C-terminal domain KW548_13745 PF00561 alpha/beta hydrolase fold KW548_13760 PF00814 Glycoprotease family KW548_13765 PF13307 Helicase C-terminal domain KW548_13765 PF04851 Type III restriction enzyme, res subunit KW548_13775 PF00551 Formyl transferase KW548_13775 PF01842 ACT domain KW548_13780 PF07992 Pyridine nucleotide-disulphide oxidoreductase KW548_13780 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KW548_13785 PF01343 Peptidase family S49 KW548_13790 PF17763 Glutaminase/Asparaginase C-terminal domain KW548_13790 PF00710 Asparaginase, N-terminal KW548_13800 PF02403 Seryl-tRNA synthetase N-terminal domain KW548_13800 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KW548_13805 PF00004 ATPase family associated with various cellular activities (AAA) KW548_13805 PF16193 AAA C-terminal domain KW548_13805 PF12002 MgsA AAA+ ATPase C terminal KW548_13810 PF03548 Outer membrane lipoprotein carrier protein LolA KW548_13815 PF02810 SEC-C motif KW548_13815 PF07516 SecA Wing and Scaffold domain KW548_13815 PF01043 SecA preprotein cross-linking domain KW548_13815 PF07517 SecA DEAD-like domain KW548_13820 PF01740 STAS domain KW548_13820 PF00916 Sulfate permease family KW548_13825 PF01207 Dihydrouridine synthase (Dus) KW548_13830 PF00005 ABC transporter KW548_13850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_13850 PF03466 LysR substrate binding domain KW548_13860 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) KW548_13865 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family KW548_13875 PF06305 Lipopolysaccharide assembly protein A domain KW548_13880 PF00216 Bacterial DNA-binding protein KW548_13885 PF00575 S1 RNA binding domain KW548_13890 PF02224 Cytidylate kinase KW548_13900 PF13145 PPIC-type PPIASE domain KW548_13905 PF00216 Bacterial DNA-binding protein KW548_13910 PF00004 ATPase family associated with various cellular activities (AAA) KW548_13910 PF05362 Lon protease (S16) C-terminal proteolytic domain KW548_13910 PF02190 ATP-dependent protease La (LON) substrate-binding domain KW548_13915 PF07724 AAA domain (Cdc48 subfamily) KW548_13915 PF10431 C-terminal, D2-small domain, of ClpB protein KW548_13915 PF06689 ClpX C4-type zinc finger KW548_13920 PF00574 Clp protease KW548_13925 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KW548_13925 PF05698 Bacterial trigger factor protein (TF) C-terminus KW548_13925 PF05697 Bacterial trigger factor protein (TF) KW548_13930 PF00512 His Kinase A (phospho-acceptor) domain KW548_13930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW548_13930 PF02743 Cache domain KW548_13945 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component KW548_13950 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component KW548_13955 PF03480 Bacterial extracellular solute-binding protein, family 7 KW548_13960 PF00005 ABC transporter KW548_13960 PF17912 MalK OB fold domain KW548_13960 PF03459 TOBE domain KW548_13965 PF00528 Binding-protein-dependent transport system inner membrane component KW548_13970 PF00528 Binding-protein-dependent transport system inner membrane component KW548_13975 PF01547 Bacterial extracellular solute-binding protein KW548_13980 PF00672 HAMP domain KW548_13980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW548_13980 PF00512 His Kinase A (phospho-acceptor) domain KW548_14000 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain KW548_14000 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain KW548_14005 PF13662 Toprim domain KW548_14005 PF02132 RecR protein KW548_14010 PF02575 YbaB/EbfC DNA-binding family KW548_14020 PF00156 Phosphoribosyl transferase domain KW548_14025 PF04304 Protein of unknown function (DUF454) KW548_14030 PF00072 Response regulator receiver domain KW548_14035 PF03466 LysR substrate binding domain KW548_14035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_14040 PF00881 Nitroreductase family KW548_14045 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KW548_14045 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KW548_14045 PF00378 Enoyl-CoA hydratase/isomerase KW548_14050 PF00108 Thiolase, N-terminal domain KW548_14050 PF02803 Thiolase, C-terminal domain KW548_14055 PF04542 Sigma-70 region 2 KW548_14055 PF08281 Sigma-70, region 4 KW548_14065 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) KW548_14070 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) KW548_14075 PF04333 MlaA lipoprotein KW548_14085 PF03918 Cytochrome C biogenesis protein KW548_14090 PF08534 Redoxin KW548_14095 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal KW548_14095 PF01578 Cytochrome C assembly protein KW548_14100 PF03100 CcmE KW548_14105 PF04995 Heme exporter protein D (CcmD) KW548_14110 PF01578 Cytochrome C assembly protein KW548_14115 PF03379 CcmB protein KW548_14120 PF00005 ABC transporter KW548_14130 PF01584 CheW-like domain KW548_14140 PF13614 AAA domain KW548_14145 PF00072 Response regulator receiver domain KW548_14145 PF01339 CheB methylesterase KW548_14150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW548_14150 PF00072 Response regulator receiver domain KW548_14150 PF01584 CheW-like domain KW548_14150 PF02895 Signal transducing histidine kinase, homodimeric domain KW548_14150 PF01627 Hpt domain KW548_14155 PF04344 Chemotaxis phosphatase, CheZ KW548_14160 PF00072 Response regulator receiver domain KW548_14165 PF04542 Sigma-70 region 2 KW548_14165 PF04539 Sigma-70 region 3 KW548_14165 PF04545 Sigma-70, region 4 KW548_14170 PF10609 NUBPL iron-transfer P-loop NTPase KW548_14175 PF00448 SRP54-type protein, GTPase domain KW548_14185 PF00300 Histidine phosphatase superfamily (branch 1) KW548_14190 PF00675 Insulinase (Peptidase family M16) KW548_14190 PF05193 Peptidase M16 inactive domain KW548_14195 PF06185 YecM protein KW548_14200 PF03485 Arginyl tRNA synthetase N terminal domain KW548_14200 PF00750 tRNA synthetases class I (R) KW548_14200 PF05746 DALR anticodon binding domain KW548_14215 PF07664 Ferrous iron transport protein B C terminus KW548_14215 PF02421 Ferrous iron transport protein B KW548_14215 PF07670 Nucleoside recognition KW548_14220 PF04023 FeoA domain KW548_14230 PF01297 Zinc-uptake complex component A periplasmic KW548_14240 PF00950 ABC 3 transport family KW548_14245 PF00156 Phosphoribosyl transferase domain KW548_14250 PF02674 Colicin V production protein KW548_14255 PF05036 Sporulation related domain KW548_14260 PF08245 Mur ligase middle domain KW548_14260 PF02875 Mur ligase family, glutamate ligase domain KW548_14265 PF17848 Acetyl-coA carboxylase zinc finger domain KW548_14265 PF01039 Carboxyl transferase domain KW548_14270 PF01416 tRNA pseudouridine synthase KW548_14280 PF01118 Semialdehyde dehydrogenase, NAD binding domain KW548_14280 PF02774 Semialdehyde dehydrogenase, dimerisation domain KW548_14290 PF00109 Beta-ketoacyl synthase, N-terminal domain KW548_14290 PF02801 Beta-ketoacyl synthase, C-terminal domain KW548_14295 PF05430 S-adenosyl-L-methionine-dependent methyltransferase KW548_14295 PF01266 FAD dependent oxidoreductase KW548_14305 PF08891 YfcL protein KW548_14325 PF03458 UPF0126 domain KW548_14335 PF01264 Chorismate synthase KW548_14340 PF05175 Methyltransferase small domain KW548_14345 PF01713 Smr domain KW548_14350 PF01312 FlhB HrpN YscU SpaS Family KW548_14355 PF01311 Bacterial export proteins, family 1 KW548_14360 PF01313 Bacterial export proteins, family 3 KW548_14365 PF00813 FliP family KW548_14370 PF04347 Flagellar biosynthesis protein, FliO KW548_14375 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term KW548_14380 PF02154 Flagellar motor switch protein FliM KW548_14380 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term KW548_14400 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KW548_14400 PF18269 T3SS EscN ATPase C-terminal domain KW548_14410 PF14842 FliG N-terminal domain KW548_14410 PF01706 FliG C-terminal domain KW548_14410 PF14841 FliG middle domain KW548_14415 PF08345 Flagellar M-ring protein C-terminal KW548_14415 PF01514 Secretory protein of YscJ/FliF family KW548_14420 PF02049 Flagellar hook-basal body complex protein FliE KW548_14425 PF00158 Sigma-54 interaction domain KW548_14425 PF02954 Bacterial regulatory protein, Fis family KW548_14425 PF00072 Response regulator receiver domain KW548_14430 PF00512 His Kinase A (phospho-acceptor) domain KW548_14430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW548_14430 PF13188 PAS domain KW548_14435 PF06490 Flagellar regulatory protein FleQ KW548_14435 PF02954 Bacterial regulatory protein, Fis family KW548_14435 PF00158 Sigma-54 interaction domain KW548_14440 PF02561 Flagellar protein FliS KW548_14450 PF07196 Flagellin hook IN motif KW548_14450 PF07195 Flagellar hook-associated protein 2 C-terminus KW548_14450 PF02465 Flagellar hook-associated protein 2 N-terminus KW548_14455 PF03646 FlaG protein KW548_14460 PF00669 Bacterial flagellin N-terminal helical region KW548_14460 PF07196 Flagellin hook IN motif KW548_14460 PF00700 Bacterial flagellin C-terminal helical region KW548_14465 PF00669 Bacterial flagellin N-terminal helical region KW548_14465 PF07196 Flagellin hook IN motif KW548_14465 PF00700 Bacterial flagellin C-terminal helical region KW548_14475 PF04261 Dyp-type peroxidase family KW548_14480 PF11143 Protein of unknown function (DUF2919) KW548_14505 PF07687 Peptidase dimerisation domain KW548_14505 PF01546 Peptidase family M20/M25/M40 KW548_14520 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) KW548_14525 PF07348 Syd protein (SUKH-2) KW548_14530 PF14489 QueF-like protein KW548_14530 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term KW548_14540 PF00990 Diguanylate cyclase, GGDEF domain KW548_14545 PF11892 Domain of unknown function (DUF3412) KW548_14545 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases KW548_14545 PF03641 Possible lysine decarboxylase KW548_14555 PF01223 DNA/RNA non-specific endonuclease KW548_14560 PF18125 RlmM ferredoxin-like domain KW548_14560 PF01728 FtsJ-like methyltransferase KW548_14575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_14575 PF03466 LysR substrate binding domain KW548_14580 PF02568 Thiamine biosynthesis protein (ThiI) KW548_14580 PF02926 THUMP domain KW548_14585 PF00691 OmpA family KW548_14585 PF13677 Membrane MotB of proton-channel complex MotA/MotB KW548_14590 PF01618 MotA/TolQ/ExbB proton channel family KW548_14595 PF02609 Exonuclease VII small subunit KW548_14600 PF00348 Polyprenyl synthetase KW548_14610 PF00849 RNA pseudouridylate synthase KW548_14615 PF04287 tRNA pseudouridine synthase C KW548_14640 PF00549 CoA-ligase KW548_14640 PF02629 CoA binding domain KW548_14645 PF00549 CoA-ligase KW548_14645 PF08442 ATP-grasp domain KW548_14650 PF02817 e3 binding domain KW548_14650 PF00364 Biotin-requiring enzyme KW548_14650 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KW548_14660 PF13085 2Fe-2S iron-sulfur cluster binding domain KW548_14670 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KW548_14675 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KW548_14680 PF00285 Citrate synthase, C-terminal domain KW548_14685 PF01784 NIF3 (NGG1p interacting factor 3) KW548_14695 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KW548_14695 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KW548_14695 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KW548_14695 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KW548_14700 PF03925 SeqA protein C-terminal domain KW548_14700 PF17206 SeqA protein N-terminal domain KW548_14705 PF00561 alpha/beta hydrolase fold KW548_14715 PF00258 Flavodoxin KW548_14725 PF01475 Ferric uptake regulator family KW548_14730 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain KW548_14730 PF00749 tRNA synthetases class I (E and Q), catalytic domain KW548_14735 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 KW548_14735 PF00367 phosphotransferase system, EIIB KW548_14735 PF02378 Phosphotransferase system, EIIC KW548_14740 PF01979 Amidohydrolase family KW548_14745 PF01047 MarR family KW548_14745 PF00480 ROK family KW548_14755 PF00733 Asparagine synthase KW548_14755 PF13537 Glutamine amidotransferase domain KW548_14760 PF00854 POT family KW548_14765 PF02838 Glycosyl hydrolase family 20, domain 2 KW548_14765 PF00728 Glycosyl hydrolase family 20, catalytic domain KW548_14765 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain KW548_14765 PF03173 Putative carbohydrate binding domain KW548_14785 PF01713 Smr domain KW548_14790 PF01479 S4 domain KW548_14790 PF00849 RNA pseudouridylate synthase KW548_14805 PF00551 Formyl transferase KW548_14815 PF06786 Uncharacterised protein family (UPF0253) KW548_14830 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain KW548_14830 PF02769 AIR synthase related protein, C-terminal domain KW548_14830 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal KW548_14835 PF00497 Bacterial extracellular solute-binding proteins, family 3 KW548_14835 PF01464 Transglycosylase SLT domain KW548_14840 PF14437 MafB19-like deaminase KW548_14845 PF03806 AbgT putative transporter family KW548_14875 PF01556 DnaJ C terminal domain KW548_14875 PF00684 DnaJ central domain KW548_14875 PF00226 DnaJ domain KW548_14880 PF00012 Hsp70 protein KW548_14885 PF00375 Sodium:dicarboxylate symporter family KW548_14890 PF01025 GrpE KW548_14905 PF02463 RecF/RecN/SMC N terminal domain KW548_14910 PF04355 SmpA / OmlA family KW548_14915 PF03658 RnfH family Ubiquitin KW548_14925 PF01668 SmpB protein KW548_14945 PF13426 PAS domain KW548_14945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW548_14945 PF08447 PAS fold KW548_14950 PF00924 Mechanosensitive ion channel KW548_14960 PF00082 Subtilase family KW548_14960 PF05922 Peptidase inhibitor I9 KW548_14960 PF00082 Subtilase family KW548_14960 PF05922 Peptidase inhibitor I9 KW548_14965 PF01553 Acyltransferase KW548_14970 PF01584 CheW-like domain KW548_14970 PF00072 Response regulator receiver domain KW548_14975 PF01053 Cys/Met metabolism PLP-dependent enzyme KW548_14990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_14990 PF03466 LysR substrate binding domain KW548_14995 PF01266 FAD dependent oxidoreductase KW548_15000 PF01235 Sodium:alanine symporter family KW548_15010 PF00704 Glycosyl hydrolases family 18 KW548_15010 PF06483 Chitinase C KW548_15015 PF02540 NAD synthase KW548_15015 PF00958 GMP synthase C terminal domain KW548_15015 PF00117 Glutamine amidotransferase class-I KW548_15020 PF00571 CBS domain KW548_15020 PF00478 IMP dehydrogenase / GMP reductase domain KW548_15025 PF02601 Exonuclease VII, large subunit KW548_15025 PF13742 OB-fold nucleic acid binding domain KW548_15035 PF00990 Diguanylate cyclase, GGDEF domain KW548_15035 PF08448 PAS fold KW548_15045 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal KW548_15045 PF01926 50S ribosome-binding GTPase KW548_15050 PF13360 PQQ-like domain KW548_15055 PF09976 Tetratricopeptide repeat-like domain KW548_15060 PF13393 Histidyl-tRNA synthetase KW548_15060 PF03129 Anticodon binding domain KW548_15065 PF04551 GcpE protein KW548_15070 PF13464 Domain of unknown function (DUF4115) KW548_15075 PF04055 Radical SAM superfamily KW548_15080 PF02657 Fe-S metabolism associated domain KW548_15085 PF00899 ThiF family KW548_15100 PF00583 Acetyltransferase (GNAT) family KW548_15100 PF00696 Amino acid kinase family KW548_15110 PF13538 UvrD-like helicase C-terminal domain KW548_15115 PF13361 UvrD-like helicase C-terminal domain KW548_15115 PF00580 UvrD/REP helicase N-terminal domain KW548_15115 PF12705 PD-(D/E)XK nuclease superfamily KW548_15130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_15130 PF03466 LysR substrate binding domain KW548_15135 PF00873 AcrB/AcrD/AcrF family KW548_15140 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KW548_15140 PF00529 HlyD membrane-fusion protein of T1SS KW548_15145 PF00440 Bacterial regulatory proteins, tetR family KW548_15150 PF07130 YebG protein KW548_15155 PF03932 CutC family KW548_15165 PF01895 PhoU domain KW548_15170 PF00005 ABC transporter KW548_15175 PF00528 Binding-protein-dependent transport system inner membrane component KW548_15180 PF00528 Binding-protein-dependent transport system inner membrane component KW548_15185 PF17941 Polyphosphate kinase C-terminal domain 1 KW548_15185 PF13089 Polyphosphate kinase N-terminal domain KW548_15185 PF02503 Polyphosphate kinase middle domain KW548_15185 PF13090 Polyphosphate kinase C-terminal domain 2 KW548_15190 PF02541 Ppx/GppA phosphatase family KW548_15195 PF12849 PBP superfamily domain KW548_15200 PF11808 Phosphate regulon sensor protein PhoR KW548_15200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW548_15200 PF00512 His Kinase A (phospho-acceptor) domain KW548_15200 PF00989 PAS fold KW548_15205 PF00072 Response regulator receiver domain KW548_15205 PF00486 Transcriptional regulatory protein, C terminal KW548_15215 PF01136 Peptidase family U32 KW548_15215 PF16325 Peptidase family U32 C-terminal domain KW548_15220 PF12838 4Fe-4S dicluster domain KW548_15225 PF02322 Cytochrome bd terminal oxidase subunit II KW548_15230 PF01654 Cytochrome bd terminal oxidase subunit I KW548_15250 PF07549 SecD/SecF GG Motif KW548_15250 PF02355 Protein export membrane protein KW548_15255 PF07549 SecD/SecF GG Motif KW548_15255 PF02355 Protein export membrane protein KW548_15255 PF13721 SecD export protein N-terminal TM region KW548_15260 PF02699 Preprotein translocase subunit KW548_15265 PF01702 Queuine tRNA-ribosyltransferase KW548_15270 PF02547 Queuosine biosynthesis protein KW548_15275 PF00571 CBS domain KW548_15280 PF02342 TerD domain KW548_15285 PF02342 TerD domain KW548_15290 PF05816 Toxic anion resistance protein (TelA) KW548_15305 PF11202 Phosphoribosyl transferase (PRTase) KW548_15305 PF15608 PELOTA RNA binding domain KW548_15325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW548_15340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_15340 PF03466 LysR substrate binding domain KW548_15345 PF10417 C-terminal domain of 1-Cys peroxiredoxin KW548_15345 PF00578 AhpC/TSA family KW548_15350 PF14602 Hexapeptide repeat of succinyl-transferase KW548_15350 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle KW548_15360 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KW548_15370 PF12833 Helix-turn-helix domain KW548_15375 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KW548_15375 PF02378 Phosphotransferase system, EIIC KW548_15375 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KW548_15390 PF03466 LysR substrate binding domain KW548_15390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_15405 PF02805 Metal binding domain of Ada KW548_15405 PF12833 Helix-turn-helix domain KW548_15410 PF00501 AMP-binding enzyme KW548_15415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_15415 PF03466 LysR substrate binding domain KW548_15425 PF03466 LysR substrate binding domain KW548_15425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_15430 PF14492 Elongation Factor G, domain II KW548_15430 PF03764 Elongation factor G, domain IV KW548_15430 PF00009 Elongation factor Tu GTP binding domain KW548_15430 PF00679 Elongation factor G C-terminus KW548_15430 PF03144 Elongation factor Tu domain 2 KW548_15435 PF00334 Nucleoside diphosphate kinase KW548_15440 PF12404 Peptidase KW548_15440 PF00883 Cytosol aminopeptidase family, catalytic domain KW548_15445 PF04384 Iron-sulphur cluster assembly KW548_15450 PF00111 2Fe-2S iron-sulfur cluster binding domain KW548_15455 PF00012 Hsp70 protein KW548_15460 PF00226 DnaJ domain KW548_15460 PF07743 HSCB C-terminal oligomerisation domain KW548_15465 PF01521 Iron-sulphur cluster biosynthesis KW548_15470 PF01592 NifU-like N terminal domain KW548_15475 PF00266 Aminotransferase class-V KW548_15480 PF02082 Transcriptional regulator KW548_15485 PF00588 SpoU rRNA Methylase family KW548_15490 PF00459 Inositol monophosphatase family KW548_15530 PF17871 AAA lid domain KW548_15530 PF02861 Clp amino terminal domain, pathogenicity island component KW548_15530 PF10431 C-terminal, D2-small domain, of ClpB protein KW548_15530 PF00004 ATPase family associated with various cellular activities (AAA) KW548_15530 PF07724 AAA domain (Cdc48 subfamily) KW548_15535 PF02578 Multi-copper polyphenol oxidoreductase laccase KW548_15540 PF00849 RNA pseudouridylate synthase KW548_15540 PF01479 S4 domain KW548_15545 PF13525 Outer membrane lipoprotein KW548_15555 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein KW548_15560 PF01817 Chorismate mutase type II KW548_15560 PF00800 Prephenate dehydratase KW548_15565 PF13416 Bacterial extracellular solute-binding protein KW548_15575 PF01931 Protein of unknown function DUF84 KW548_15580 PF01371 Trp repressor protein KW548_15585 PF01464 Transglycosylase SLT domain KW548_15585 PF14718 Soluble lytic murein transglycosylase L domain KW548_15590 PF12848 ABC transporter KW548_15590 PF00005 ABC transporter KW548_15595 PF07238 PilZ domain KW548_15600 PF01551 Peptidase family M23 KW548_15600 PF04225 Opacity-associated protein A LysM-like domain KW548_15605 PF01817 Chorismate mutase type II KW548_15605 PF02153 Prephenate dehydrogenase KW548_15610 PF00793 DAHP synthetase I family KW548_15615 PF06580 Histidine kinase KW548_15615 PF07694 5TMR of 5TMR-LYT KW548_15620 PF04397 LytTr DNA-binding domain KW548_15620 PF00072 Response regulator receiver domain KW548_15625 PF00933 Glycosyl hydrolase family 3 N terminal domain KW548_15630 PF03702 Anhydro-N-acetylmuramic acid kinase KW548_15635 PF13580 SIS domain KW548_15650 PF02401 LytB protein KW548_15655 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KW548_15660 PF01252 Signal peptidase (SPase) II KW548_15670 PF06574 FAD synthetase KW548_15670 PF01687 Riboflavin kinase KW548_15675 PF03023 Lipid II flippase MurJ KW548_15680 PF01649 Ribosomal protein S20 KW548_15685 PF01022 Bacterial regulatory protein, arsR family KW548_15690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_15690 PF03466 LysR substrate binding domain KW548_15695 PF02690 Na+/Pi-cotransporter KW548_15700 PF00303 Thymidylate synthase KW548_15705 PF01790 Prolipoprotein diacylglyceryl transferase KW548_15715 PF01590 GAF domain KW548_15715 PF05524 PEP-utilising enzyme, N-terminal KW548_15715 PF00391 PEP-utilising enzyme, mobile domain KW548_15715 PF02896 PEP-utilising enzyme, TIM barrel domain KW548_15720 PF00293 NUDIX domain KW548_15735 PF00248 Aldo/keto reductase family KW548_15745 PF02954 Bacterial regulatory protein, Fis family KW548_15745 PF00072 Response regulator receiver domain KW548_15745 PF00158 Sigma-54 interaction domain KW548_15750 PF01554 MatE KW548_15755 PF01047 MarR family KW548_15765 PF00575 S1 RNA binding domain KW548_15765 PF03725 3' exoribonuclease family, domain 2 KW548_15765 PF00013 KH domain KW548_15765 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain KW548_15765 PF01138 3' exoribonuclease family, domain 1 KW548_15795 PF07724 AAA domain (Cdc48 subfamily) KW548_15795 PF10431 C-terminal, D2-small domain, of ClpB protein KW548_15800 PF00312 Ribosomal protein S15 KW548_15810 PF01048 Phosphorylase superfamily KW548_15820 PF01497 Periplasmic binding protein KW548_15825 PF03458 UPF0126 domain KW548_15830 PF00291 Pyridoxal-phosphate dependent enzyme KW548_15830 PF14821 Threonine synthase N terminus KW548_15835 PF00288 GHMP kinases N terminal domain KW548_15835 PF08544 GHMP kinases C terminal KW548_15840 PF00696 Amino acid kinase family KW548_15840 PF01842 ACT domain KW548_15840 PF13840 ACT domain KW548_15840 PF00742 Homoserine dehydrogenase KW548_15840 PF03447 Homoserine dehydrogenase, NAD binding domain KW548_15855 PF03737 Aldolase/RraA KW548_15865 PF00072 Response regulator receiver domain KW548_15865 PF00486 Transcriptional regulatory protein, C terminal KW548_15870 PF01467 Cytidylyltransferase-like KW548_15870 PF00294 pfkB family carbohydrate kinase KW548_15875 PF08335 GlnD PII-uridylyltransferase KW548_15875 PF03710 Glutamate-ammonia ligase adenylyltransferase KW548_15880 PF00672 HAMP domain KW548_15880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW548_15885 PF07885 Ion channel KW548_15885 PF00027 Cyclic nucleotide-binding domain KW548_15890 PF01928 CYTH domain KW548_15895 PF01865 Protein of unknown function DUF47 KW548_15900 PF01384 Phosphate transporter family KW548_15910 PF16537 Type II secretion system protein B KW548_15915 PF13401 AAA domain KW548_15915 PF01471 Putative peptidoglycan binding domain KW548_15920 PF01966 HD domain KW548_15920 PF01743 Poly A polymerase head domain KW548_15920 PF12627 Probable RNA and SrmB- binding site of polymerase A KW548_15930 PF00113 Enolase, C-terminal TIM barrel domain KW548_15930 PF03952 Enolase, N-terminal domain KW548_15935 PF06418 CTP synthase N-terminus KW548_15935 PF00117 Glutamine amidotransferase class-I KW548_15940 PF03819 MazG nucleotide pyrophosphohydrolase domain KW548_15950 PF01938 TRAM domain KW548_15950 PF05958 tRNA (Uracil-5-)-methyltransferase KW548_15960 PF01648 4'-phosphopantetheinyl transferase superfamily KW548_15970 PF02565 Recombination protein O C terminal KW548_15970 PF11967 Recombination protein O N terminal KW548_15975 PF07650 KH domain KW548_15975 PF01926 50S ribosome-binding GTPase KW548_15980 PF00035 Double-stranded RNA binding motif KW548_15980 PF14622 Ribonuclease-III-like KW548_15985 PF10502 Signal peptidase, peptidase S26 KW548_16000 PF03888 MucB/RseB N-terminal domain KW548_16000 PF17188 MucB/RseB C-terminal domain KW548_16005 PF03873 Anti sigma-E protein RseA, C-terminal domain KW548_16005 PF03872 Anti sigma-E protein RseA, N-terminal domain KW548_16010 PF08281 Sigma-70, region 4 KW548_16010 PF04542 Sigma-70 region 2 KW548_16020 PF03937 Flavinator of succinate dehydrogenase KW548_16040 PF01494 FAD binding domain KW548_16045 PF01494 FAD binding domain KW548_16050 PF03695 Uncharacterised protein family (UPF0149) KW548_16055 PF05164 Cell division protein ZapA KW548_16065 PF01812 5-formyltetrahydrofolate cyclo-ligase family KW548_16070 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) KW548_16075 PF01842 ACT domain KW548_16075 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KW548_16075 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KW548_16080 PF07690 Major Facilitator Superfamily KW548_16085 PF03009 Glycerophosphoryl diester phosphodiesterase family KW548_16090 PF10369 Small subunit of acetolactate synthase KW548_16095 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KW548_16095 PF00205 Thiamine pyrophosphate enzyme, central domain KW548_16095 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KW548_16100 PF00501 AMP-binding enzyme KW548_16105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_16105 PF03466 LysR substrate binding domain KW548_16125 PF00682 HMGL-like KW548_16125 PF08502 LeuA allosteric (dimerisation) domain KW548_16140 PF00694 Aconitase C-terminal domain KW548_16210 PF02664 S-Ribosylhomocysteinase (LuxS) KW548_16220 PF04262 Glutamate-cysteine ligase KW548_16225 PF00675 Insulinase (Peptidase family M16) KW548_16225 PF05193 Peptidase M16 inactive domain KW548_16230 PF09335 SNARE associated Golgi protein KW548_16235 PF08240 Alcohol dehydrogenase GroES-like domain KW548_16235 PF00107 Zinc-binding dehydrogenase KW548_16245 PF02436 Conserved carboxylase domain KW548_16245 PF00364 Biotin-requiring enzyme KW548_16245 PF00682 HMGL-like KW548_16250 PF04277 Oxaloacetate decarboxylase, gamma chain KW548_16295 PF02599 Global regulator protein family KW548_16300 PF00696 Amino acid kinase family KW548_16300 PF01842 ACT domain KW548_16300 PF13840 ACT domain KW548_16305 PF02272 DHHA1 domain KW548_16305 PF01411 tRNA synthetases class II (A) KW548_16305 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KW548_16310 PF02631 RecX family KW548_16315 PF00154 recA bacterial DNA recombination protein KW548_16320 PF02464 Competence-damaged protein KW548_16325 PF05816 Toxic anion resistance protein (TelA) KW548_16335 PF17864 RuvB AAA lid domain KW548_16335 PF05491 RuvB C-terminal winged helix domain KW548_16335 PF05496 Holliday junction DNA helicase RuvB P-loop domain KW548_16350 PF01624 MutS domain I KW548_16350 PF00488 MutS domain V KW548_16350 PF05190 MutS family domain IV KW548_16350 PF05188 MutS domain II KW548_16350 PF05192 MutS domain III KW548_16355 PF03739 Lipopolysaccharide export system permease LptF/LptG KW548_16360 PF03739 Lipopolysaccharide export system permease LptF/LptG KW548_16365 PF00883 Cytosol aminopeptidase family, catalytic domain KW548_16365 PF02789 Cytosol aminopeptidase family, N-terminal domain KW548_16370 PF04364 DNA polymerase III chi subunit, HolC KW548_16375 PF08264 Anticodon-binding domain of tRNA KW548_16375 PF00133 tRNA synthetases class I (I, L, M and V) KW548_16375 PF10458 Valyl tRNA synthetase tRNA binding arm KW548_16385 PF05987 Bacterial protein of unknown function (DUF898) KW548_16395 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KW548_16395 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KW548_16400 PF00849 RNA pseudouridylate synthase KW548_16410 PF18339 RapA N-terminal Tudor like domain 1 KW548_16410 PF18337 RapA N-terminal Tudor like domain KW548_16410 PF00271 Helicase conserved C-terminal domain KW548_16410 PF12137 RNA polymerase recycling family C-terminal KW548_16410 PF00176 SNF2 family N-terminal domain KW548_16415 PF02562 PhoH-like protein KW548_16415 PF13638 PIN domain KW548_16420 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KW548_16420 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KW548_16425 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KW548_16425 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KW548_16430 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain KW548_16430 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain KW548_16435 PF01042 Endoribonuclease L-PSP KW548_16445 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KW548_16445 PF00056 lactate/malate dehydrogenase, NAD binding domain KW548_16450 PF01316 Arginine repressor, DNA binding domain KW548_16450 PF02863 Arginine repressor, C-terminal domain KW548_16455 PF16868 NMT1-like family KW548_16465 PF00582 Universal stress protein family KW548_16495 PF00795 Carbon-nitrogen hydrolase KW548_16515 PF04093 rod shape-determining protein MreD KW548_16605 PF00155 Aminotransferase class I and II KW548_16625 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KW548_16625 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KW548_16630 PF00085 Thioredoxin KW548_16635 PF07690 Major Facilitator Superfamily KW548_16675 PF04237 YjbR KW548_16685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW548_16685 PF00672 HAMP domain KW548_16690 PF00676 Dehydrogenase E1 component KW548_16695 PF02779 Transketolase, pyrimidine binding domain KW548_16695 PF02780 Transketolase, C-terminal domain KW548_16700 PF00364 Biotin-requiring enzyme KW548_16700 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KW548_16700 PF02817 e3 binding domain KW548_16705 PF00990 Diguanylate cyclase, GGDEF domain KW548_16710 PF01012 Electron transfer flavoprotein domain KW548_16710 PF00766 Electron transfer flavoprotein FAD-binding domain KW548_16715 PF01012 Electron transfer flavoprotein domain KW548_16725 PF00127 Copper binding proteins, plastocyanin/azurin family KW548_16735 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KW548_16735 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KW548_16740 PF00378 Enoyl-CoA hydratase/isomerase KW548_16745 PF00378 Enoyl-CoA hydratase/isomerase KW548_16755 PF00171 Aldehyde dehydrogenase family KW548_16765 PF09278 MerR, DNA binding KW548_16765 PF00376 MerR family regulatory protein KW548_16770 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KW548_16770 PF02770 Acyl-CoA dehydrogenase, middle domain KW548_16770 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KW548_16775 PF01039 Carboxyl transferase domain KW548_16780 PF00378 Enoyl-CoA hydratase/isomerase KW548_16785 PF00682 HMGL-like KW548_16805 PF01810 LysE type translocator KW548_16810 PF07681 DoxX KW548_16815 PF02678 Pirin KW548_16815 PF17954 Quercetinase C-terminal cupin domain KW548_16830 PF01235 Sodium:alanine symporter family KW548_16850 PF00563 EAL domain KW548_16850 PF00498 FHA domain KW548_16850 PF00990 Diguanylate cyclase, GGDEF domain KW548_16870 PF00313 'Cold-shock' DNA-binding domain KW548_16875 PF00551 Formyl transferase KW548_16885 PF07690 Major Facilitator Superfamily KW548_16895 PF12833 Helix-turn-helix domain KW548_16900 PF08808 RES domain KW548_16905 PF09722 Protein of unknown function (DUF2384) KW548_16980 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KW548_16980 PF01872 RibD C-terminal domain KW548_17010 PF02028 BCCT, betaine/carnitine/choline family transporter KW548_17025 PF07683 Cobalamin synthesis protein cobW C-terminal domain KW548_17025 PF02492 CobW/HypB/UreG, nucleotide-binding domain KW548_17045 PF04463 Protein of unknown function (DUF523) KW548_17090 PF12833 Helix-turn-helix domain KW548_17090 PF02311 AraC-like ligand binding domain KW548_17125 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system KW548_17130 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system KW548_17135 PF00857 Isochorismatase family KW548_17185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_17185 PF03466 LysR substrate binding domain KW548_17195 PF00871 Acetokinase family KW548_17200 PF00563 EAL domain KW548_17200 PF00990 Diguanylate cyclase, GGDEF domain KW548_17200 PF03707 Bacterial signalling protein N terminal repeat KW548_17205 PF13411 MerR HTH family regulatory protein KW548_17215 PF14579 Helix-hairpin-helix motif KW548_17215 PF00929 Exonuclease KW548_17215 PF02811 PHP domain KW548_17215 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KW548_17215 PF07733 Bacterial DNA polymerase III alpha NTPase domain KW548_17220 PF02028 BCCT, betaine/carnitine/choline family transporter KW548_17225 PF01047 MarR family KW548_17230 PF00990 Diguanylate cyclase, GGDEF domain KW548_17230 PF08448 PAS fold KW548_17235 PF01037 Lrp/AsnC ligand binding domain KW548_17255 PF07690 Major Facilitator Superfamily KW548_17260 PF05762 VWA domain containing CoxE-like protein KW548_17265 PF17868 AAA lid domain KW548_17265 PF12592 Protein of unknown function (DUF3763) KW548_17265 PF07728 AAA domain (dynein-related subfamily) KW548_17270 PF00293 NUDIX domain KW548_17275 PF01212 Beta-eliminating lyase KW548_17295 PF08329 Chitinase A, N-terminal domain KW548_17295 PF00704 Glycosyl hydrolases family 18 KW548_17305 PF00072 Response regulator receiver domain KW548_17305 PF01584 CheW-like domain KW548_17310 PF00990 Diguanylate cyclase, GGDEF domain KW548_17335 PF18027 Cytosolic carboxypeptidase N-terminal domain KW548_17335 PF00246 Zinc carboxypeptidase KW548_17340 PF00854 POT family KW548_17350 PF07702 UTRA domain KW548_17350 PF00392 Bacterial regulatory proteins, gntR family KW548_17355 PF00528 Binding-protein-dependent transport system inner membrane component KW548_17360 PF00005 ABC transporter KW548_17380 PF00202 Aminotransferase class-III KW548_17385 PF13419 Haloacid dehalogenase-like hydrolase KW548_17400 PF13419 Haloacid dehalogenase-like hydrolase KW548_17405 PF03466 LysR substrate binding domain KW548_17405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_17420 PF00465 Iron-containing alcohol dehydrogenase KW548_17445 PF02355 Protein export membrane protein KW548_17445 PF13721 SecD export protein N-terminal TM region KW548_17445 PF07549 SecD/SecF GG Motif KW548_17465 PF01329 Pterin 4 alpha carbinolamine dehydratase KW548_17470 PF00351 Biopterin-dependent aromatic amino acid hydroxylase KW548_17475 PF13193 AMP-binding enzyme C-terminal domain KW548_17475 PF00501 AMP-binding enzyme KW548_17500 PF00072 Response regulator receiver domain KW548_17500 PF00512 His Kinase A (phospho-acceptor) domain KW548_17500 PF09456 RcsC Alpha-Beta-Loop (ABL) KW548_17500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW548_17505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW548_17505 PF00512 His Kinase A (phospho-acceptor) domain KW548_17505 PF09456 RcsC Alpha-Beta-Loop (ABL) KW548_17505 PF00072 Response regulator receiver domain KW548_17535 PF01546 Peptidase family M20/M25/M40 KW548_17535 PF07687 Peptidase dimerisation domain KW548_17545 PF07662 Na+ dependent nucleoside transporter C-terminus KW548_17545 PF01773 Na+ dependent nucleoside transporter N-terminus KW548_17545 PF07670 Nucleoside recognition KW548_17555 PF00194 Eukaryotic-type carbonic anhydrase KW548_17565 PF00107 Zinc-binding dehydrogenase KW548_17565 PF08240 Alcohol dehydrogenase GroES-like domain KW548_17570 PF00155 Aminotransferase class I and II KW548_17575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_17575 PF03466 LysR substrate binding domain KW548_17580 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KW548_17590 PF06123 Inner membrane protein CreD KW548_17595 PF00672 HAMP domain KW548_17595 PF00512 His Kinase A (phospho-acceptor) domain KW548_17595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW548_17600 PF00486 Transcriptional regulatory protein, C terminal KW548_17600 PF00072 Response regulator receiver domain KW548_17610 PF00072 Response regulator receiver domain KW548_17610 PF00486 Transcriptional regulatory protein, C terminal KW548_17615 PF00672 HAMP domain KW548_17615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW548_17615 PF00512 His Kinase A (phospho-acceptor) domain KW548_17620 PF00892 EamA-like transporter family KW548_17755 PF01936 NYN domain KW548_17755 PF09722 Protein of unknown function (DUF2384) KW548_17795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW548_17795 PF00672 HAMP domain KW548_17795 PF02743 Cache domain KW548_17800 PF07726 ATPase family associated with various cellular activities (AAA) KW548_17800 PF17863 AAA lid domain KW548_17805 PF01882 Protein of unknown function DUF58 KW548_17820 PF13519 von Willebrand factor type A domain KW548_17835 PF00892 EamA-like transporter family KW548_17840 PF14602 Hexapeptide repeat of succinyl-transferase KW548_17840 PF12464 Maltose acetyltransferase KW548_17845 PF02566 OsmC-like protein KW548_17850 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KW548_17870 PF13520 Amino acid permease KW548_17875 PF13230 Glutamine amidotransferases class-II KW548_17890 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KW548_17890 PF00529 HlyD membrane-fusion protein of T1SS KW548_17895 PF07969 Amidohydrolase family KW548_17900 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KW548_17905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW548_17905 PF00512 His Kinase A (phospho-acceptor) domain KW548_17905 PF01627 Hpt domain KW548_17905 PF00072 Response regulator receiver domain KW548_17905 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KW548_17905 PF00672 HAMP domain KW548_17965 PF00528 Binding-protein-dependent transport system inner membrane component KW548_17975 PF01547 Bacterial extracellular solute-binding protein KW548_17980 PF00005 ABC transporter KW548_17980 PF08402 TOBE domain KW548_17985 PF01243 Pyridoxamine 5'-phosphate oxidase KW548_17990 PF06228 Haem utilisation ChuX/HutX KW548_18000 PF01618 MotA/TolQ/ExbB proton channel family KW548_18005 PF02472 Biopolymer transport protein ExbD/TolR KW548_18015 PF01032 FecCD transport family KW548_18020 PF00005 ABC transporter KW548_18025 PF07690 Major Facilitator Superfamily KW548_18035 PF01476 LysM domain KW548_18035 PF01551 Peptidase family M23 KW548_18035 PF08525 Opacity-associated protein A N-terminal motif KW548_18050 PF01575 MaoC like domain KW548_18055 PF12849 PBP superfamily domain KW548_18065 PF00575 S1 RNA binding domain KW548_18065 PF00773 RNB domain KW548_18065 PF08206 Ribonuclease B OB domain KW548_18070 PF03880 DbpA RNA binding domain KW548_18070 PF00270 DEAD/DEAH box helicase KW548_18070 PF00271 Helicase conserved C-terminal domain KW548_18080 PF00497 Bacterial extracellular solute-binding proteins, family 3 KW548_18080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW548_18080 PF00512 His Kinase A (phospho-acceptor) domain KW548_18085 PF11849 Domain of unknown function (DUF3369) KW548_18090 PF00356 Bacterial regulatory proteins, lacI family KW548_18095 PF00294 pfkB family carbohydrate kinase KW548_18100 PF13407 Periplasmic binding protein domain KW548_18105 PF02653 Branched-chain amino acid transport system / permease component KW548_18110 PF00005 ABC transporter KW548_18115 PF05025 RbsD / FucU transport protein family KW548_18130 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KW548_18130 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KW548_18130 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KW548_18175 PF00795 Carbon-nitrogen hydrolase KW548_18220 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KW548_18225 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KW548_18225 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KW548_18230 PF01661 Macro domain KW548_18270 PF12833 Helix-turn-helix domain KW548_18270 PF00072 Response regulator receiver domain KW548_18325 PF03824 High-affinity nickel-transport protein KW548_18330 PF02868 Thermolysin metallopeptidase, alpha-helical domain KW548_18330 PF01447 Thermolysin metallopeptidase, catalytic domain KW548_18330 PF04151 Bacterial pre-peptidase C-terminal domain KW548_18330 PF07504 Fungalysin/Thermolysin Propeptide Motif KW548_18330 PF03413 Peptidase propeptide and YPEB domain KW548_18365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_18365 PF03466 LysR substrate binding domain KW548_18370 PF03707 Bacterial signalling protein N terminal repeat KW548_18370 PF00990 Diguanylate cyclase, GGDEF domain KW548_18370 PF00563 EAL domain KW548_18380 PF06865 Pyrimidine/purine nucleoside phosphorylase KW548_18385 PF03109 ABC1 family KW548_18395 PF00924 Mechanosensitive ion channel KW548_18415 PF12706 Beta-lactamase superfamily domain KW548_18425 PF02397 Bacterial sugar transferase KW548_18440 PF02706 Chain length determinant protein KW548_18440 PF13807 G-rich domain on putative tyrosine kinase KW548_18440 PF13614 AAA domain KW548_18465 PF00085 Thioredoxin KW548_18470 PF11412 Disulphide bond corrector protein DsbC KW548_18470 PF02683 Cytochrome C biogenesis protein transmembrane region KW548_18485 PF01810 LysE type translocator KW548_18505 PF01557 Fumarylacetoacetate (FAA) hydrolase family KW548_18515 PF00012 Hsp70 protein KW548_18520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_18520 PF03466 LysR substrate binding domain KW548_18540 PF00990 Diguanylate cyclase, GGDEF domain KW548_18545 PF13458 Periplasmic binding protein KW548_18550 PF00990 Diguanylate cyclase, GGDEF domain KW548_18550 PF17151 Periplasmic sensor domain KW548_18560 PF08521 Two-component sensor kinase N-terminal KW548_18560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW548_18560 PF00512 His Kinase A (phospho-acceptor) domain KW548_18565 PF00072 Response regulator receiver domain KW548_18565 PF00486 Transcriptional regulatory protein, C terminal KW548_18570 PF17837 4'-phosphopantetheinyl transferase N-terminal domain KW548_18570 PF01648 4'-phosphopantetheinyl transferase superfamily KW548_18575 PF13533 Biotin-lipoyl like KW548_18580 PF00107 Zinc-binding dehydrogenase KW548_18580 PF16884 N-terminal domain of oxidoreductase KW548_18590 PF07690 Major Facilitator Superfamily KW548_18600 PF00550 Phosphopantetheine attachment site KW548_18600 PF02801 Beta-ketoacyl synthase, C-terminal domain KW548_18600 PF00109 Beta-ketoacyl synthase, N-terminal domain KW548_18600 PF16197 Ketoacyl-synthetase C-terminal extension KW548_18600 PF00668 Condensation domain KW548_18600 PF00698 Acyl transferase domain KW548_18605 PF00550 Phosphopantetheine attachment site KW548_18605 PF00668 Condensation domain KW548_18605 PF13193 AMP-binding enzyme C-terminal domain KW548_18605 PF00501 AMP-binding enzyme KW548_18610 PF00501 AMP-binding enzyme KW548_18610 PF13193 AMP-binding enzyme C-terminal domain KW548_18610 PF00550 Phosphopantetheine attachment site KW548_18610 PF00975 Thioesterase domain KW548_18610 PF00668 Condensation domain KW548_18615 PF00975 Thioesterase domain KW548_18615 PF00501 AMP-binding enzyme KW548_18615 PF00550 Phosphopantetheine attachment site KW548_18615 PF00668 Condensation domain KW548_18615 PF13193 AMP-binding enzyme C-terminal domain KW548_18620 PF00891 O-methyltransferase domain KW548_18625 PF01554 MatE KW548_18630 PF00005 ABC transporter KW548_18630 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KW548_18635 PF00005 ABC transporter KW548_18635 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KW548_18640 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KW548_18645 PF00528 Binding-protein-dependent transport system inner membrane component KW548_18650 PF04389 Peptidase family M28 KW548_18650 PF02225 PA domain KW548_18655 PF00128 Alpha amylase, catalytic domain KW548_18655 PF02903 Alpha amylase, N-terminal ig-like domain KW548_18655 PF16657 Maltogenic Amylase, C-terminal domain KW548_18675 PF01810 LysE type translocator KW548_18680 PF04397 LytTr DNA-binding domain KW548_18680 PF00072 Response regulator receiver domain KW548_18685 PF06580 Histidine kinase KW548_18685 PF07694 5TMR of 5TMR-LYT KW548_18685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW548_18700 PF02687 FtsX-like permease family KW548_18700 PF12704 MacB-like periplasmic core domain KW548_18705 PF00005 ABC transporter KW548_18720 PF00171 Aldehyde dehydrogenase family KW548_18745 PF00155 Aminotransferase class I and II KW548_18750 PF12833 Helix-turn-helix domain KW548_18750 PF01497 Periplasmic binding protein KW548_18755 PF00797 N-acetyltransferase KW548_18760 PF14489 QueF-like protein KW548_18760 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term KW548_18775 PF00892 EamA-like transporter family KW548_18795 PF00875 DNA photolyase KW548_18795 PF03441 FAD binding domain of DNA photolyase KW548_18810 PF09278 MerR, DNA binding KW548_18810 PF00376 MerR family regulatory protein KW548_18820 PF00672 HAMP domain KW548_18820 PF12729 Four helix bundle sensory module for signal transduction KW548_18820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW548_18825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW548_18825 PF00672 HAMP domain KW548_18825 PF12729 Four helix bundle sensory module for signal transduction KW548_18830 PF08269 Cache domain KW548_18830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW548_18840 PF02264 LamB porin KW548_18845 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KW548_18845 PF00128 Alpha amylase, catalytic domain KW548_18870 PF03808 Glycosyl transferase WecB/TagA/CpsF family KW548_18880 PF13439 Glycosyltransferase Family 4 KW548_18890 PF00132 Bacterial transferase hexapeptide (six repeats) KW548_18905 PF00534 Glycosyl transferases group 1 KW548_18910 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KW548_18910 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KW548_18910 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KW548_18915 PF02350 UDP-N-acetylglucosamine 2-epimerase KW548_18920 PF01451 Low molecular weight phosphotyrosine protein phosphatase KW548_18935 PF00360 Phytochrome region KW548_18935 PF00990 Diguanylate cyclase, GGDEF domain KW548_18935 PF01590 GAF domain KW548_18935 PF00563 EAL domain KW548_18940 PF00248 Aldo/keto reductase family KW548_18950 PF00128 Alpha amylase, catalytic domain KW548_18960 PF00793 DAHP synthetase I family KW548_18965 PF00005 ABC transporter KW548_18970 PF00528 Binding-protein-dependent transport system inner membrane component KW548_18975 PF00497 Bacterial extracellular solute-binding proteins, family 3 KW548_18980 PF00528 Binding-protein-dependent transport system inner membrane component KW548_18985 PF01040 UbiA prenyltransferase family KW548_18990 PF02628 Cytochrome oxidase assembly protein KW548_19015 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 KW548_19020 PF00115 Cytochrome C and Quinol oxidase polypeptide I KW548_19025 PF00116 Cytochrome C oxidase subunit II, periplasmic domain KW548_19025 PF02790 Cytochrome C oxidase subunit II, transmembrane domain KW548_19030 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KW548_19030 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KW548_19030 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KW548_19030 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KW548_19035 PF00892 EamA-like transporter family KW548_19045 PF03618 Kinase/pyrophosphorylase KW548_19050 PF02896 PEP-utilising enzyme, TIM barrel domain KW548_19050 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain KW548_19050 PF00391 PEP-utilising enzyme, mobile domain KW548_19055 PF07670 Nucleoside recognition KW548_19060 PF00970 Oxidoreductase FAD-binding domain KW548_19060 PF00175 Oxidoreductase NAD-binding domain KW548_19085 PF00873 AcrB/AcrD/AcrF family KW548_19095 PF02678 Pirin KW548_19095 PF05726 Pirin C-terminal cupin domain KW548_19100 PF00132 Bacterial transferase hexapeptide (six repeats) KW548_19105 PF00561 alpha/beta hydrolase fold KW548_19135 PF02909 Tetracyclin repressor-like, C-terminal domain KW548_19135 PF00440 Bacterial regulatory proteins, tetR family KW548_19140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_19140 PF03466 LysR substrate binding domain KW548_19145 PF01810 LysE type translocator KW548_19150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_19150 PF03466 LysR substrate binding domain KW548_19160 PF00472 RF-1 domain KW548_19190 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family KW548_19220 PF04151 Bacterial pre-peptidase C-terminal domain KW548_19220 PF08453 Peptidase family M9 N-terminal KW548_19220 PF01752 Collagenase KW548_19230 PF03372 Endonuclease/Exonuclease/phosphatase family KW548_19240 PF01752 Collagenase KW548_19240 PF08453 Peptidase family M9 N-terminal KW548_19245 PF00271 Helicase conserved C-terminal domain KW548_19245 PF00270 DEAD/DEAH box helicase KW548_19275 PF01476 LysM domain KW548_19275 PF03734 L,D-transpeptidase catalytic domain KW548_19275 PF17969 L,D-transpeptidase C-terminal domain KW548_19280 PF00875 DNA photolyase KW548_19280 PF03441 FAD binding domain of DNA photolyase KW548_19285 PF13411 MerR HTH family regulatory protein KW548_19290 PF08349 Protein of unknown function (DUF1722) KW548_19295 PF01048 Phosphorylase superfamily KW548_19310 PF00990 Diguanylate cyclase, GGDEF domain KW548_19320 PF11742 Protein of unknown function (DUF3302) KW548_19325 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KW548_19325 PF00529 HlyD membrane-fusion protein of T1SS KW548_19340 PF00202 Aminotransferase class-III KW548_19345 PF05853 beta-keto acid cleavage enzyme KW548_19355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_19355 PF03466 LysR substrate binding domain KW548_19365 PF00664 ABC transporter transmembrane region KW548_19365 PF00005 ABC transporter KW548_19370 PF00589 Phage integrase family KW548_19370 PF02899 Phage integrase, N-terminal SAM-like domain KW548_19395 PF07693 KAP family P-loop domain KW548_19400 PF07693 KAP family P-loop domain KW548_19420 PF07885 Ion channel KW548_19440 PF06892 Phage regulatory protein CII (CP76) KW548_19475 PF05840 Bacteriophage replication gene A protein (GPA) KW548_19490 PF04172 LrgB-like family KW548_19495 PF07157 DNA circularisation protein N-terminus KW548_19510 PF07409 Phage protein GP46 KW548_19540 PF00959 Phage lysozyme KW548_19590 PF10948 Protein of unknown function (DUF2635) KW548_19595 PF17482 Phage tail sheath C-terminal domain KW548_19595 PF04984 Phage tail sheath protein subtilisin-like domain KW548_19625 PF12441 CopG antitoxin of type II toxin-antitoxin system KW548_19660 PF01037 Lrp/AsnC ligand binding domain KW548_19680 PF00171 Aldehyde dehydrogenase family KW548_19680 PF01619 Proline dehydrogenase KW548_19680 PF14850 DNA-binding domain of Proline dehydrogenase KW548_19680 PF18327 Proline utilization A proline dehydrogenase N-terminal domain KW548_19685 PF12833 Helix-turn-helix domain KW548_19695 PF03781 Sulfatase-modifying factor enzyme 1 KW548_19700 PF01243 Pyridoxamine 5'-phosphate oxidase KW548_19700 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region KW548_19705 PF00529 HlyD membrane-fusion protein of T1SS KW548_19720 PF00664 ABC transporter transmembrane region KW548_19720 PF00005 ABC transporter KW548_19720 PF03412 Peptidase C39 family KW548_19725 PF00704 Glycosyl hydrolases family 18 KW548_19725 PF08329 Chitinase A, N-terminal domain KW548_19730 PF01212 Beta-eliminating lyase KW548_19735 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) KW548_19755 PF02630 SCO1/SenC KW548_19775 PF02586 SOS response associated peptidase (SRAP) KW548_19780 PF00881 Nitroreductase family KW548_19835 PF00593 TonB dependent receptor KW548_19835 PF07715 TonB-dependent Receptor Plug Domain KW548_19860 PF01638 HxlR-like helix-turn-helix KW548_19880 PF01717 Cobalamin-independent synthase, Catalytic domain KW548_19880 PF08267 Cobalamin-independent synthase, N-terminal domain KW548_19885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW548_19885 PF00672 HAMP domain KW548_19885 PF02743 Cache domain KW548_19910 PF00557 Metallopeptidase family M24 KW548_19975 PF17676 LD-carboxypeptidase C-terminal domain KW548_19975 PF02016 LD-carboxypeptidase N-terminal domain KW548_19985 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KW548_19985 PF02806 Alpha amylase, C-terminal all-beta domain KW548_19985 PF00128 Alpha amylase, catalytic domain KW548_19990 PF02446 4-alpha-glucanotransferase KW548_19995 PF00343 Carbohydrate phosphorylase KW548_20000 PF17874 MalT-like TPR region KW548_20000 PF00196 Bacterial regulatory proteins, luxR family KW548_20005 PF03466 LysR substrate binding domain KW548_20005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_20010 PF00583 Acetyltransferase (GNAT) family KW548_20020 PF10928 Protein of unknown function (DUF2810) KW548_20025 PF00132 Bacterial transferase hexapeptide (six repeats) KW548_20040 PF00672 HAMP domain KW548_20040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW548_20040 PF17200 Single Cache domain 2 KW548_20045 PF02311 AraC-like ligand binding domain KW548_20045 PF12833 Helix-turn-helix domain KW548_20055 PF05922 Peptidase inhibitor I9 KW548_20055 PF00082 Subtilase family KW548_20055 PF04151 Bacterial pre-peptidase C-terminal domain KW548_20075 PF00462 Glutaredoxin KW548_20075 PF08534 Redoxin KW548_20080 PF00392 Bacterial regulatory proteins, gntR family KW548_20080 PF07729 FCD domain KW548_20085 PF03450 CO dehydrogenase flavoprotein C-terminal domain KW548_20085 PF00941 FAD binding domain in molybdopterin dehydrogenase KW548_20090 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain KW548_20090 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase KW548_20100 PF01979 Amidohydrolase family KW548_20105 PF01209 ubiE/COQ5 methyltransferase family KW548_20110 PF00672 HAMP domain KW548_20110 PF00072 Response regulator receiver domain KW548_20110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW548_20110 PF00512 His Kinase A (phospho-acceptor) domain KW548_20110 PF01627 Hpt domain KW548_20110 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KW548_20130 PF04115 Ureidoglycolate lyase KW548_20135 PF03561 Allantoicase repeat KW548_20140 PF01014 Uricase KW548_20140 PF09349 OHCU decarboxylase KW548_20150 PF00576 HIUase/Transthyretin family KW548_20160 PF00561 alpha/beta hydrolase fold KW548_20170 PF00753 Metallo-beta-lactamase superfamily KW548_20175 PF02463 RecF/RecN/SMC N terminal domain KW548_20200 PF01040 UbiA prenyltransferase family KW548_20210 PF00510 Cytochrome c oxidase subunit III KW548_20215 PF00115 Cytochrome C and Quinol oxidase polypeptide I KW548_20225 PF00497 Bacterial extracellular solute-binding proteins, family 3 KW548_20230 PF00672 HAMP domain KW548_20230 PF02743 Cache domain KW548_20230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW548_20290 PF01274 Malate synthase KW548_20330 PF01047 MarR family KW548_20350 PF13407 Periplasmic binding protein domain KW548_20355 PF00293 NUDIX domain KW548_20360 PF03466 LysR substrate binding domain KW548_20360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_20365 PF08803 Putative mono-oxygenase ydhR KW548_20380 PF01638 HxlR-like helix-turn-helix KW548_20415 PF01709 Transcriptional regulator KW548_20430 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KW548_20430 PF00005 ABC transporter KW548_20435 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KW548_20435 PF00005 ABC transporter KW548_20450 PF18607 ParA helix turn helix domain KW548_20450 PF13614 AAA domain KW548_20455 PF02195 ParB-like nuclease domain KW548_20455 PF08775 ParB family KW548_20460 PF05127 Helicase KW548_20460 PF13718 GNAT acetyltransferase 2 KW548_20465 PF00672 HAMP domain KW548_20465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW548_20475 PF00072 Response regulator receiver domain KW548_20480 PF01584 CheW-like domain KW548_20480 PF01627 Hpt domain KW548_20480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW548_20480 PF02895 Signal transducing histidine kinase, homodimeric domain KW548_20480 PF09078 CheY binding KW548_20485 PF01584 CheW-like domain KW548_20490 PF01584 CheW-like domain KW548_20495 PF02203 Tar ligand binding domain homologue KW548_20495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW548_20495 PF00672 HAMP domain KW548_20500 PF03705 CheR methyltransferase, all-alpha domain KW548_20500 PF01739 CheR methyltransferase, SAM binding domain KW548_20560 PF00582 Universal stress protein family KW548_20570 PF00232 Glycosyl hydrolase family 1 KW548_20575 PF01925 Sulfite exporter TauE/SafE KW548_20580 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KW548_20580 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KW548_20590 PF15567 Immunity protein 35 KW548_20600 PF03466 LysR substrate binding domain KW548_20600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_20605 PF00155 Aminotransferase class I and II KW548_20610 PF00155 Aminotransferase class I and II KW548_20615 PF07690 Major Facilitator Superfamily KW548_20640 PF00300 Histidine phosphatase superfamily (branch 1) KW548_20665 PF01471 Putative peptidoglycan binding domain KW548_20665 PF04717 Type VI secretion system, phage-baseplate injector KW548_20685 PF07690 Major Facilitator Superfamily KW548_20690 PF13419 Haloacid dehalogenase-like hydrolase KW548_20695 PF08240 Alcohol dehydrogenase GroES-like domain KW548_20695 PF16912 Glucose dehydrogenase C-terminus KW548_20700 PF00202 Aminotransferase class-III KW548_20705 PF05656 Protein of unknown function (DUF805) KW548_20720 PF00005 ABC transporter KW548_20720 PF00664 ABC transporter transmembrane region KW548_20720 PF03412 Peptidase C39 family KW548_20740 PF02794 RTX toxin acyltransferase family KW548_20765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW548_20765 PF00672 HAMP domain KW548_20765 PF02743 Cache domain KW548_20780 PF01809 Putative membrane protein insertion efficiency factor KW548_20795 PF01168 Alanine racemase, N-terminal domain KW548_20795 PF14031 Putative serine dehydratase domain KW548_20805 PF03466 LysR substrate binding domain KW548_20805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_20830 PF03070 TENA/THI-4/PQQC family KW548_20845 PF17158 Membrane-associated sensor, integral membrane domain KW548_20845 PF00990 Diguanylate cyclase, GGDEF domain KW548_20855 PF03466 LysR substrate binding domain KW548_20855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_20870 PF03466 LysR substrate binding domain KW548_20870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_20875 PF00107 Zinc-binding dehydrogenase KW548_20875 PF08240 Alcohol dehydrogenase GroES-like domain KW548_20885 PF17912 MalK OB fold domain KW548_20885 PF00005 ABC transporter KW548_20890 PF00528 Binding-protein-dependent transport system inner membrane component KW548_20895 PF00528 Binding-protein-dependent transport system inner membrane component KW548_20900 PF13416 Bacterial extracellular solute-binding protein KW548_20955 PF00939 Sodium:sulfate symporter transmembrane region KW548_21015 PF02525 Flavodoxin-like fold KW548_21030 PF00672 HAMP domain KW548_21030 PF00512 His Kinase A (phospho-acceptor) domain KW548_21030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW548_21035 PF00486 Transcriptional regulatory protein, C terminal KW548_21035 PF00072 Response regulator receiver domain KW548_21045 PF06029 AlkA N-terminal domain KW548_21045 PF00730 HhH-GPD superfamily base excision DNA repair protein KW548_21050 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KW548_21050 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KW548_21060 PF03600 Citrate transporter KW548_21105 PF12833 Helix-turn-helix domain KW548_21105 PF06445 GyrI-like small molecule binding domain KW548_21110 PF07715 TonB-dependent Receptor Plug Domain KW548_21110 PF00593 TonB dependent receptor KW548_21140 PF00375 Sodium:dicarboxylate symporter family KW548_21145 PF02954 Bacterial regulatory protein, Fis family KW548_21145 PF00072 Response regulator receiver domain KW548_21145 PF00158 Sigma-54 interaction domain KW548_21290 PF03009 Glycerophosphoryl diester phosphodiesterase family KW548_21375 PF00155 Aminotransferase class I and II KW548_21385 PF02668 Taurine catabolism dioxygenase TauD, TfdA family KW548_21395 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 KW548_21400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_21400 PF03466 LysR substrate binding domain KW548_21405 PF02028 BCCT, betaine/carnitine/choline family transporter KW548_21410 PF00795 Carbon-nitrogen hydrolase KW548_21410 PF02540 NAD synthase KW548_21445 PF00135 Carboxylesterase family KW548_21455 PF00571 CBS domain KW548_21455 PF00005 ABC transporter KW548_21460 PF00528 Binding-protein-dependent transport system inner membrane component KW548_21470 PF12793 Sugar transport-related sRNA regulator N-term KW548_21470 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KW548_21475 PF00881 Nitroreductase family KW548_21510 PF00263 Bacterial type II and III secretion system protein KW548_21510 PF13629 Pilus formation protein N terminal region KW548_21510 PF04972 BON domain KW548_21520 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain KW548_21525 PF00437 Type II/IV secretion system protein KW548_21575 PF02424 ApbE family KW548_21580 PF02683 Cytochrome C biogenesis protein transmembrane region KW548_21580 PF11412 Disulphide bond corrector protein DsbC KW548_21585 PF00171 Aldehyde dehydrogenase family KW548_21590 PF03466 LysR substrate binding domain KW548_21590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_21595 PF00106 short chain dehydrogenase KW548_21600 PF02743 Cache domain KW548_21600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW548_21600 PF00672 HAMP domain KW548_21605 PF12849 PBP superfamily domain KW548_21610 PF00528 Binding-protein-dependent transport system inner membrane component KW548_21615 PF00528 Binding-protein-dependent transport system inner membrane component KW548_21620 PF00005 ABC transporter KW548_21625 PF00563 EAL domain KW548_21625 PF03707 Bacterial signalling protein N terminal repeat KW548_21625 PF00990 Diguanylate cyclase, GGDEF domain KW548_21635 PF00375 Sodium:dicarboxylate symporter family KW548_21640 PF03193 RsgA GTPase KW548_21655 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase KW548_21670 PF00583 Acetyltransferase (GNAT) family KW548_21675 PF12729 Four helix bundle sensory module for signal transduction KW548_21675 PF00672 HAMP domain KW548_21675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW548_21680 PF12945 Flagellar protein YcgR KW548_21680 PF07238 PilZ domain KW548_21695 PF13302 Acetyltransferase (GNAT) domain KW548_21705 PF08032 RNA 2'-O ribose methyltransferase substrate binding KW548_21705 PF00588 SpoU rRNA Methylase family KW548_21710 PF00037 4Fe-4S binding domain KW548_21710 PF11953 Domain of unknown function (DUF3470) KW548_21720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_21720 PF03466 LysR substrate binding domain KW548_21725 PF00764 Arginosuccinate synthase KW548_21740 PF01047 MarR family KW548_21750 PF00072 Response regulator receiver domain KW548_21750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW548_21755 PF17327 Acyl homoserine lactone synthase KW548_21770 PF00873 AcrB/AcrD/AcrF family KW548_21780 PF07670 Nucleoside recognition KW548_21790 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KW548_21790 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KW548_21790 PF02824 TGS domain KW548_21790 PF03129 Anticodon binding domain KW548_21805 PF00043 Glutathione S-transferase, C-terminal domain KW548_21805 PF02798 Glutathione S-transferase, N-terminal domain KW548_21820 PF03441 FAD binding domain of DNA photolyase KW548_21820 PF00875 DNA photolyase KW548_21825 PF04244 Deoxyribodipyrimidine photo-lyase-related protein KW548_21835 PF03992 Antibiotic biosynthesis monooxygenase KW548_21840 PF03733 Inner membrane component domain KW548_21850 PF00497 Bacterial extracellular solute-binding proteins, family 3 KW548_21855 PF00155 Aminotransferase class I and II KW548_21860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_21860 PF03466 LysR substrate binding domain KW548_21865 PF00753 Metallo-beta-lactamase superfamily KW548_21875 PF01447 Thermolysin metallopeptidase, catalytic domain KW548_21875 PF03413 Peptidase propeptide and YPEB domain KW548_21875 PF04151 Bacterial pre-peptidase C-terminal domain KW548_21875 PF07504 Fungalysin/Thermolysin Propeptide Motif KW548_21875 PF02868 Thermolysin metallopeptidase, alpha-helical domain KW548_21880 PF04151 Bacterial pre-peptidase C-terminal domain KW548_21880 PF04389 Peptidase family M28 KW548_21890 PF07992 Pyridine nucleotide-disulphide oxidoreductase KW548_21890 PF04324 BFD-like [2Fe-2S] binding domain KW548_21895 PF01266 FAD dependent oxidoreductase KW548_21915 PF01551 Peptidase family M23 KW548_21915 PF08525 Opacity-associated protein A N-terminal motif KW548_21915 PF01476 LysM domain KW548_21920 PF03922 OmpW family KW548_21935 PF00082 Subtilase family KW548_21945 PF05995 Cysteine dioxygenase type I KW548_21955 PF01810 LysE type translocator KW548_21995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW548_21995 PF00497 Bacterial extracellular solute-binding proteins, family 3 KW548_21995 PF00512 His Kinase A (phospho-acceptor) domain KW548_22000 PF03334 Na+/H+ antiporter subunit KW548_22005 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) KW548_22010 PF01899 Na+/H+ ion antiporter subunit KW548_22015 PF00361 Proton-conducting membrane transporter KW548_22020 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L KW548_22025 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter KW548_22025 PF00361 Proton-conducting membrane transporter KW548_22025 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KW548_22025 PF13244 Domain of unknown function (DUF4040) KW548_22035 PF00582 Universal stress protein family KW548_22095 PF01810 LysE type translocator KW548_22100 PF01037 Lrp/AsnC ligand binding domain KW548_22125 PF00117 Glutamine amidotransferase class-I KW548_22140 PF00472 RF-1 domain KW548_22160 PF10127 RNA repair pathway DNA polymerase beta family KW548_22165 PF01139 tRNA-splicing ligase RtcB KW548_22185 PF00158 Sigma-54 interaction domain KW548_22185 PF06956 Regulator of RNA terminal phosphate cyclase KW548_22235 PF01810 LysE type translocator KW548_22240 PF00583 Acetyltransferase (GNAT) family KW548_22275 PF05016 ParE toxin of type II toxin-antitoxin system, parDE KW548_22285 PF05016 ParE toxin of type II toxin-antitoxin system, parDE KW548_22305 PF00106 short chain dehydrogenase KW548_22370 PF00005 ABC transporter KW548_22370 PF00664 ABC transporter transmembrane region KW548_22375 PF02347 Glycine cleavage system P-protein KW548_22380 PF01597 Glycine cleavage H-protein KW548_22385 PF00464 Serine hydroxymethyltransferase KW548_22395 PF01571 Aminomethyltransferase folate-binding domain KW548_22395 PF08669 Glycine cleavage T-protein C-terminal barrel domain KW548_22410 PF00196 Bacterial regulatory proteins, luxR family KW548_22415 PF02540 NAD synthase KW548_22435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_22435 PF03466 LysR substrate binding domain KW548_22440 PF07690 Major Facilitator Superfamily KW548_22450 PF00462 Glutaredoxin KW548_22455 PF00892 EamA-like transporter family KW548_22465 PF01554 MatE KW548_22470 PF00999 Sodium/hydrogen exchanger family KW548_22470 PF02254 TrkA-N domain KW548_22480 PF13419 Haloacid dehalogenase-like hydrolase KW548_22490 PF01590 GAF domain KW548_22490 PF00158 Sigma-54 interaction domain KW548_22495 PF00970 Oxidoreductase FAD-binding domain KW548_22495 PF00042 Globin KW548_22495 PF00175 Oxidoreductase NAD-binding domain KW548_22510 PF00313 'Cold-shock' DNA-binding domain KW548_22515 PF03889 Alternative ribosome-rescue factor A KW548_22530 PF00768 D-alanyl-D-alanine carboxypeptidase KW548_22530 PF07943 Penicillin-binding protein 5, C-terminal domain KW548_22540 PF12843 Putative quorum-sensing-regulated virulence factor KW548_22600 PF04717 Type VI secretion system, phage-baseplate injector KW548_22605 PF00155 Aminotransferase class I and II KW548_22605 PF00392 Bacterial regulatory proteins, gntR family KW548_22625 PF00672 HAMP domain KW548_22625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW548_22625 PF12729 Four helix bundle sensory module for signal transduction KW548_22630 PF01625 Peptide methionine sulfoxide reductase KW548_22630 PF01641 SelR domain KW548_22650 PF01654 Cytochrome bd terminal oxidase subunit I KW548_22655 PF03116 NQR2, RnfD, RnfE family KW548_22675 PF13188 PAS domain KW548_22675 PF03707 Bacterial signalling protein N terminal repeat KW548_22675 PF00990 Diguanylate cyclase, GGDEF domain KW548_22675 PF00563 EAL domain KW548_22690 PF00873 AcrB/AcrD/AcrF family KW548_22695 PF13977 BetI-type transcriptional repressor, C-terminal KW548_22695 PF00440 Bacterial regulatory proteins, tetR family KW548_22710 PF00072 Response regulator receiver domain KW548_22710 PF00486 Transcriptional regulatory protein, C terminal KW548_22715 PF00512 His Kinase A (phospho-acceptor) domain KW548_22715 PF14827 Double sensory domain of two-component sensor kinase KW548_22715 PF00672 HAMP domain KW548_22715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW548_22715 PF13426 PAS domain KW548_22720 PF13673 Acetyltransferase (GNAT) domain KW548_22755 PF00005 ABC transporter KW548_22775 PF10415 Fumarase C C-terminus KW548_22775 PF00206 Lyase KW548_22790 PF00581 Rhodanese-like domain KW548_22790 PF17773 UPF0176 acylphosphatase like domain KW548_22795 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KW548_22800 PF02798 Glutathione S-transferase, N-terminal domain KW548_22805 PF13419 Haloacid dehalogenase-like hydrolase KW548_22810 PF00128 Alpha amylase, catalytic domain KW548_22815 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KW548_22815 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KW548_22820 PF00141 Peroxidase KW548_22830 PF16884 N-terminal domain of oxidoreductase KW548_22830 PF00107 Zinc-binding dehydrogenase KW548_22835 PF16925 Tetracyclin repressor-like, C-terminal domain KW548_22835 PF00440 Bacterial regulatory proteins, tetR family KW548_22850 PF04266 ASCH domain KW548_22855 PF00270 DEAD/DEAH box helicase KW548_22855 PF00271 Helicase conserved C-terminal domain KW548_22865 PF01979 Amidohydrolase family KW548_22870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_22870 PF03466 LysR substrate binding domain KW548_22875 PF14602 Hexapeptide repeat of succinyl-transferase KW548_22875 PF12464 Maltose acetyltransferase KW548_22890 PF03466 LysR substrate binding domain KW548_22890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_22895 PF00709 Adenylosuccinate synthetase KW548_22940 PF03060 Nitronate monooxygenase KW548_22950 PF01042 Endoribonuclease L-PSP KW548_22965 PF04231 Endonuclease I KW548_22990 PF00849 RNA pseudouridylate synthase KW548_23000 PF00756 Putative esterase KW548_23005 PF08240 Alcohol dehydrogenase GroES-like domain KW548_23005 PF00107 Zinc-binding dehydrogenase KW548_23010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_23010 PF03466 LysR substrate binding domain KW548_23015 PF07690 Major Facilitator Superfamily KW548_23030 PF01810 LysE type translocator KW548_23035 PF01037 Lrp/AsnC ligand binding domain KW548_23040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW548_23040 PF00672 HAMP domain KW548_23040 PF12729 Four helix bundle sensory module for signal transduction KW548_23050 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KW548_23050 PF02824 TGS domain KW548_23050 PF03129 Anticodon binding domain KW548_23050 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KW548_23055 PF00707 Translation initiation factor IF-3, C-terminal domain KW548_23055 PF05198 Translation initiation factor IF-3, N-terminal domain KW548_23060 PF01632 Ribosomal protein L35 KW548_23065 PF00453 Ribosomal protein L20 KW548_23095 PF00171 Aldehyde dehydrogenase family KW548_23100 PF01590 GAF domain KW548_23100 PF02954 Bacterial regulatory protein, Fis family KW548_23100 PF00158 Sigma-54 interaction domain KW548_23110 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain KW548_23110 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KW548_23115 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase KW548_23120 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain KW548_23120 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain KW548_23125 PF01966 HD domain KW548_23145 PF07690 Major Facilitator Superfamily KW548_23155 PF00196 Bacterial regulatory proteins, luxR family KW548_23155 PF00072 Response regulator receiver domain KW548_23160 PF07690 Major Facilitator Superfamily KW548_23175 PF01979 Amidohydrolase family KW548_23180 PF03473 MOSC domain KW548_23180 PF03473 MOSC domain KW548_23180 PF00111 2Fe-2S iron-sulfur cluster binding domain KW548_23180 PF03476 MOSC N-terminal beta barrel domain KW548_23180 PF03476 MOSC N-terminal beta barrel domain KW548_23180 PF00111 2Fe-2S iron-sulfur cluster binding domain KW548_23185 PF03472 Autoinducer binding domain KW548_23185 PF00196 Bacterial regulatory proteins, luxR family KW548_23210 PF05661 Protein of unknown function (DUF808) KW548_23220 PF00128 Alpha amylase, catalytic domain KW548_23265 PF01256 Carbohydrate kinase KW548_23265 PF03853 YjeF-related protein N-terminus KW548_23270 PF00478 IMP dehydrogenase / GMP reductase domain KW548_23275 PF02899 Phage integrase, N-terminal SAM-like domain KW548_23275 PF00589 Phage integrase family KW548_23325 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family KW548_23335 PF01177 Asp/Glu/Hydantoin racemase KW548_23375 PF13977 BetI-type transcriptional repressor, C-terminal KW548_23375 PF00440 Bacterial regulatory proteins, tetR family KW548_23380 PF00171 Aldehyde dehydrogenase family KW548_23385 PF00732 GMC oxidoreductase KW548_23385 PF05199 GMC oxidoreductase KW548_23390 PF04069 Substrate binding domain of ABC-type glycine betaine transport system KW548_23395 PF00528 Binding-protein-dependent transport system inner membrane component KW548_23400 PF00005 ABC transporter KW548_23400 PF00571 CBS domain KW548_23410 PF02567 Phenazine biosynthesis-like protein KW548_23425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_23425 PF03466 LysR substrate binding domain KW548_23430 PF00005 ABC transporter KW548_23430 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KW548_23440 PF13654 AAA domain KW548_23440 PF05362 Lon protease (S16) C-terminal proteolytic domain KW548_23445 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KW548_23445 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KW548_23460 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KW548_23465 PF00528 Binding-protein-dependent transport system inner membrane component KW548_23475 PF00005 ABC transporter KW548_23475 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KW548_23480 PF00563 EAL domain KW548_23480 PF00990 Diguanylate cyclase, GGDEF domain KW548_23480 PF03707 Bacterial signalling protein N terminal repeat KW548_23505 PF01032 FecCD transport family KW548_23510 PF01032 FecCD transport family KW548_23515 PF00005 ABC transporter KW548_23535 PF07690 Major Facilitator Superfamily KW548_23545 PF00990 Diguanylate cyclase, GGDEF domain KW548_23550 PF07694 5TMR of 5TMR-LYT KW548_23550 PF00990 Diguanylate cyclase, GGDEF domain KW548_23575 PF01476 LysM domain KW548_23575 PF08525 Opacity-associated protein A N-terminal motif KW548_23575 PF01551 Peptidase family M23 KW548_23635 PF00158 Sigma-54 interaction domain KW548_23635 PF02954 Bacterial regulatory protein, Fis family KW548_23635 PF01590 GAF domain KW548_23640 PF17871 AAA lid domain KW548_23640 PF07724 AAA domain (Cdc48 subfamily) KW548_23640 PF00004 ATPase family associated with various cellular activities (AAA) KW548_23640 PF10431 C-terminal, D2-small domain, of ClpB protein KW548_23645 PF05638 Type VI secretion system effector, Hcp KW548_23675 PF03793 PASTA domain KW548_23675 PF00069 Protein kinase domain KW548_23690 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath KW548_23700 PF05947 Type VI secretion system, TssF KW548_23710 PF01037 Lrp/AsnC ligand binding domain KW548_23745 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE KW548_23760 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KW548_23770 PF00873 AcrB/AcrD/AcrF family KW548_23780 PF00108 Thiolase, N-terminal domain KW548_23780 PF02803 Thiolase, C-terminal domain KW548_23790 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus KW548_23790 PF00561 alpha/beta hydrolase fold KW548_23800 PF07690 Major Facilitator Superfamily KW548_23805 PF00657 GDSL-like Lipase/Acylhydrolase KW548_23825 PF07992 Pyridine nucleotide-disulphide oxidoreductase KW548_23825 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KW548_23850 PF13597 Anaerobic ribonucleoside-triphosphate reductase KW548_23850 PF03477 ATP cone domain KW548_23860 PF00155 Aminotransferase class I and II KW548_23865 PF08443 RimK-like ATP-grasp domain KW548_23865 PF18030 RimK PreATP-grasp domain KW548_23875 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KW548_23875 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KW548_23895 PF13183 4Fe-4S dicluster domain KW548_23895 PF02754 Cysteine-rich domain KW548_23900 PF00890 FAD binding domain KW548_23905 PF01266 FAD dependent oxidoreductase KW548_23905 PF04324 BFD-like [2Fe-2S] binding domain KW548_23910 PF00230 Major intrinsic protein KW548_23915 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KW548_23915 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KW548_23925 PF04363 Protein of unknown function (DUF496) KW548_23930 PF04337 Protein of unknown function, DUF480 KW548_23935 PF01541 GIY-YIG catalytic domain KW548_23945 PF13407 Periplasmic binding protein domain KW548_23950 PF09308 LuxQ, periplasmic KW548_23950 PF00512 His Kinase A (phospho-acceptor) domain KW548_23950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW548_23950 PF00072 Response regulator receiver domain KW548_23960 PF01266 FAD dependent oxidoreductase KW548_23960 PF16901 C-terminal domain of alpha-glycerophosphate oxidase KW548_24005 PF00226 DnaJ domain KW548_24005 PF00684 DnaJ central domain KW548_24005 PF01556 DnaJ C terminal domain KW548_24015 PF00563 EAL domain KW548_24015 PF00990 Diguanylate cyclase, GGDEF domain KW548_24015 PF03707 Bacterial signalling protein N terminal repeat KW548_24015 PF13188 PAS domain KW548_24030 PF00005 ABC transporter KW548_24040 PF01266 FAD dependent oxidoreductase KW548_24055 PF03746 LamB/YcsF family KW548_24075 PF03606 C4-dicarboxylate anaerobic carrier KW548_24095 PF01292 Prokaryotic cytochrome b561 KW548_24100 PF04264 YceI-like domain KW548_24105 PF01226 Formate/nitrite transporter KW548_24110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_24110 PF03466 LysR substrate binding domain KW548_24115 PF06496 Protein of unknown function (DUF1097) KW548_24125 PF00149 Calcineurin-like phosphoesterase KW548_24125 PF02872 5'-nucleotidase, C-terminal domain KW548_24130 PF03741 Integral membrane protein TerC family KW548_24150 PF00563 EAL domain KW548_24150 PF00990 Diguanylate cyclase, GGDEF domain KW548_24150 PF03707 Bacterial signalling protein N terminal repeat KW548_24170 PF03061 Thioesterase superfamily KW548_24180 PF12793 Sugar transport-related sRNA regulator N-term KW548_24180 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KW548_24190 PF07715 TonB-dependent Receptor Plug Domain KW548_24190 PF00593 TonB dependent receptor KW548_24200 PF00583 Acetyltransferase (GNAT) family KW548_24200 PF13380 CoA binding domain KW548_24200 PF13607 Succinyl-CoA ligase like flavodoxin domain KW548_24205 PF05036 Sporulation related domain KW548_24225 PF01253 Translation initiation factor SUI1 KW548_24290 PF03701 Uncharacterised protein family (UPF0181) KW548_24305 PF00486 Transcriptional regulatory protein, C terminal KW548_24305 PF00072 Response regulator receiver domain KW548_24315 PF02233 NAD(P) transhydrogenase beta subunit KW548_24320 PF01262 Alanine dehydrogenase/PNT, C-terminal domain KW548_24320 PF05222 Alanine dehydrogenase/PNT, N-terminal domain KW548_24320 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch KW548_24350 PF00005 ABC transporter KW548_24350 PF03459 TOBE domain KW548_24355 PF00528 Binding-protein-dependent transport system inner membrane component KW548_24365 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain KW548_24365 PF07685 CobB/CobQ-like glutamine amidotransferase domain KW548_24380 PF00356 Bacterial regulatory proteins, lacI family KW548_24380 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family KW548_24385 PF00381 PTS HPr component phosphorylation site KW548_24385 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KW548_24390 PF00294 pfkB family carbohydrate kinase KW548_24400 PF00990 Diguanylate cyclase, GGDEF domain KW548_24405 PF00483 Nucleotidyl transferase KW548_24410 PF12833 Helix-turn-helix domain KW548_24410 PF06719 AraC-type transcriptional regulator N-terminus KW548_24415 PF00465 Iron-containing alcohol dehydrogenase KW548_24425 PF00672 HAMP domain KW548_24425 PF00072 Response regulator receiver domain KW548_24425 PF01627 Hpt domain KW548_24425 PF00512 His Kinase A (phospho-acceptor) domain KW548_24425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW548_24430 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family KW548_24435 PF02142 MGS-like domain KW548_24440 PF01081 KDPG and KHG aldolase KW548_24465 PF00294 pfkB family carbohydrate kinase KW548_24470 PF13419 Haloacid dehalogenase-like hydrolase KW548_24475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW548_24475 PF00672 HAMP domain KW548_24475 PF12729 Four helix bundle sensory module for signal transduction KW548_24480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW548_24480 PF03466 LysR substrate binding domain KW548_24485 PF00291 Pyridoxal-phosphate dependent enzyme KW548_24520 PF00271 Helicase conserved C-terminal domain KW548_24520 PF00270 DEAD/DEAH box helicase KW548_24525 PF04336 Acyl carrier protein phosphodiesterase KW548_24530 PF03222 Tryptophan/tyrosine permease family KW548_24535 PF01625 Peptide methionine sulfoxide reductase KW548_24535 PF01641 SelR domain KW548_24540 PF03880 DbpA RNA binding domain KW548_24540 PF00271 Helicase conserved C-terminal domain KW548_24540 PF00270 DEAD/DEAH box helicase KW548_24545 PF01227 GTP cyclohydrolase I KW548_24550 PF03453 MoeA N-terminal region (domain I and II) KW548_24550 PF00994 Probable molybdopterin binding domain KW548_24550 PF03454 MoeA C-terminal region (domain IV) KW548_24555 PF00899 ThiF family KW548_24565 PF00581 Rhodanese-like domain KW548_24575 PF00923 Transaldolase/Fructose-6-phosphate aldolase KW548_24580 PF02779 Transketolase, pyrimidine binding domain KW548_24580 PF02780 Transketolase, C-terminal domain KW548_24580 PF00456 Transketolase, thiamine diphosphate binding domain KW548_24585 PF01037 Lrp/AsnC ligand binding domain KW548_24595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW548_24595 PF00672 HAMP domain KW548_24600 PF00563 EAL domain KW548_24600 PF01590 GAF domain KW548_24600 PF00990 Diguanylate cyclase, GGDEF domain KW548_24600 PF00360 Phytochrome region KW548_24610 PF04229 GrpB protein KW548_24625 PF02492 CobW/HypB/UreG, nucleotide-binding domain KW548_24625 PF07683 Cobalamin synthesis protein cobW C-terminal domain KW548_24650 PF13476 AAA domain KW548_24655 PF12320 Type 5 capsule protein repressor C-terminal domain KW548_24655 PF00149 Calcineurin-like phosphoesterase KW548_24660 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KW548_24660 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KW548_24665 PF00085 Thioredoxin KW548_24670 PF07690 Major Facilitator Superfamily KW548_24710 PF04237 YjbR KW548_24740 PF00990 Diguanylate cyclase, GGDEF domain KW548_24760 PF00127 Copper binding proteins, plastocyanin/azurin family