locus-tag class description DR996_00005 PF10124 Mu-like prophage major head subunit gpT DR996_00030 PF02397 Bacterial sugar transferase DR996_00040 PF13322 Domain of unknown function (DUF4092) DR996_00040 PF17291 N-terminal domain of M60-like peptidases DR996_00040 PF13402 Peptidase M60, enhancin and enhancin-like DR996_00065 PF00563 EAL domain DR996_00065 PF00990 Diguanylate cyclase, GGDEF domain DR996_00065 PF03707 Bacterial signalling protein N terminal repeat DR996_00065 PF13188 PAS domain DR996_00070 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DR996_00070 PF00072 Response regulator receiver domain DR996_00070 PF01627 Hpt domain DR996_00070 PF00512 His Kinase A (phospho-acceptor) domain DR996_00070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_00070 PF00672 HAMP domain DR996_00090 PF12464 Maltose acetyltransferase DR996_00090 PF00132 Bacterial transferase hexapeptide (six repeats) DR996_00095 PF00072 Response regulator receiver domain DR996_00095 PF09308 LuxQ, periplasmic DR996_00095 PF00512 His Kinase A (phospho-acceptor) domain DR996_00095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_00105 PF01928 CYTH domain DR996_00120 PF04237 YjbR DR996_00125 PF01047 MarR family DR996_00135 PF01238 Phosphomannose isomerase type I DR996_00150 PF07992 Pyridine nucleotide-disulphide oxidoreductase DR996_00150 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DR996_00160 PF01968 Hydantoinase/oxoprolinase DR996_00160 PF05378 Hydantoinase/oxoprolinase N-terminal region DR996_00170 PF01074 Glycosyl hydrolases family 38 N-terminal domain DR996_00170 PF17677 Glycosyl hydrolases family 38 C-terminal beta sandwich domain DR996_00170 PF09261 Alpha mannosidase middle domain DR996_00170 PF18438 Glycosyl hydrolases family 38 C-terminal domain 1 DR996_00170 PF07748 Glycosyl hydrolases family 38 C-terminal domain DR996_00175 PF00480 ROK family DR996_00180 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase DR996_00190 PF00480 ROK family DR996_00205 PF01411 tRNA synthetases class II (A) DR996_00205 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DR996_00205 PF02272 DHHA1 domain DR996_00210 PF03729 Short repeat of unknown function (DUF308) DR996_00215 PF00924 Mechanosensitive ion channel DR996_00225 PF17945 Beta/Gamma crystallin DR996_00225 PF12561 ToxR activated gene A lipoprotein domain DR996_00230 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family DR996_00245 PF00072 Response regulator receiver domain DR996_00245 PF00486 Transcriptional regulatory protein, C terminal DR996_00295 PF01966 HD domain DR996_00300 PF03352 Methyladenine glycosylase DR996_00300 PF00117 Glutamine amidotransferase class-I DR996_00300 PF00958 GMP synthase C terminal domain DR996_00300 PF13673 Acetyltransferase (GNAT) domain DR996_00300 PF13302 Acetyltransferase (GNAT) domain DR996_00305 PF00582 Universal stress protein family DR996_00320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_00320 PF03466 LysR substrate binding domain DR996_00335 PF11893 Domain of unknown function (DUF3413) DR996_00335 PF00884 Sulfatase DR996_00345 PF00267 Gram-negative porin DR996_00350 PF03466 LysR substrate binding domain DR996_00350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_00355 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DR996_00360 PF00873 AcrB/AcrD/AcrF family DR996_00365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_00365 PF03466 LysR substrate binding domain DR996_00370 PF05552 Conserved TM helix DR996_00370 PF00924 Mechanosensitive ion channel DR996_00375 PF05552 Conserved TM helix DR996_00375 PF00924 Mechanosensitive ion channel DR996_00400 PF00990 Diguanylate cyclase, GGDEF domain DR996_00400 PF00360 Phytochrome region DR996_00400 PF00563 EAL domain DR996_00400 PF01590 GAF domain DR996_00440 PF00691 OmpA family DR996_00440 PF01389 OmpA-like transmembrane domain DR996_00490 PF01389 OmpA-like transmembrane domain DR996_00490 PF00691 OmpA family DR996_00515 PF00934 PE family DR996_00515 PF07859 alpha/beta hydrolase fold DR996_00525 PF02798 Glutathione S-transferase, N-terminal domain DR996_00525 PF14497 Glutathione S-transferase, C-terminal domain DR996_00535 PF04209 homogentisate 1,2-dioxygenase DR996_00540 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DR996_00555 PF01546 Peptidase family M20/M25/M40 DR996_00555 PF07687 Peptidase dimerisation domain DR996_00560 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DR996_00565 PF00528 Binding-protein-dependent transport system inner membrane component DR996_00570 PF00528 Binding-protein-dependent transport system inner membrane component DR996_00570 PF12911 N-terminal TM domain of oligopeptide transport permease C DR996_00575 PF00005 ABC transporter DR996_00575 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DR996_00580 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DR996_00580 PF00005 ABC transporter DR996_00595 PF00041 Fibronectin type III domain DR996_00595 PF12561 ToxR activated gene A lipoprotein domain DR996_00600 PF08453 Peptidase family M9 N-terminal DR996_00600 PF01752 Collagenase DR996_00625 PF01048 Phosphorylase superfamily DR996_00630 PF00528 Binding-protein-dependent transport system inner membrane component DR996_00635 PF00528 Binding-protein-dependent transport system inner membrane component DR996_00640 PF08402 TOBE domain DR996_00640 PF00005 ABC transporter DR996_00645 PF00701 Dihydrodipicolinate synthetase family DR996_00650 PF02423 Ornithine cyclodeaminase/mu-crystallin family DR996_00660 PF01266 FAD dependent oxidoreductase DR996_00665 PF05544 Proline racemase DR996_00670 PF00171 Aldehyde dehydrogenase family DR996_00675 PF00392 Bacterial regulatory proteins, gntR family DR996_00690 PF05971 RNA methyltransferase DR996_00695 PF01863 Protein of unknown function DUF45 DR996_00705 PF11999 Protein of unknown function (DUF3494) DR996_00705 PF02368 Bacterial Ig-like domain (group 2) DR996_00715 PF00732 GMC oxidoreductase DR996_00715 PF05199 GMC oxidoreductase DR996_00720 PF00072 Response regulator receiver domain DR996_00720 PF01339 CheB methylesterase DR996_00730 PF09308 LuxQ, periplasmic DR996_00730 PF00512 His Kinase A (phospho-acceptor) domain DR996_00730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_00730 PF00072 Response regulator receiver domain DR996_00745 PF00486 Transcriptional regulatory protein, C terminal DR996_00745 PF00072 Response regulator receiver domain DR996_00795 PF07963 Prokaryotic N-terminal methylation motif DR996_00795 PF14245 Type IV pilin PilA DR996_00805 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DR996_00820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_00820 PF03466 LysR substrate binding domain DR996_00825 PF07690 Major Facilitator Superfamily DR996_00845 PF00005 ABC transporter DR996_00850 PF01032 FecCD transport family DR996_00855 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family DR996_00865 PF00300 Histidine phosphatase superfamily (branch 1) DR996_00870 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase DR996_00875 PF02654 Cobalamin-5-phosphate synthase DR996_00880 PF02277 Phosphoribosyltransferase DR996_00885 PF01613 Flavin reductase like domain DR996_00890 PF13460 NAD(P)H-binding DR996_00905 PF00929 Exonuclease DR996_00905 PF08411 Exonuclease C-terminal DR996_00910 PF03788 LrgA family DR996_00915 PF04172 LrgB-like family DR996_00920 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region DR996_00920 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DR996_00930 PF02222 ATP-grasp domain DR996_00935 PF05724 Thiopurine S-methyltransferase (TPMT) DR996_00945 PF00216 Bacterial DNA-binding protein DR996_00955 PF13407 Periplasmic binding protein domain DR996_00955 PF00356 Bacterial regulatory proteins, lacI family DR996_00960 PF00294 pfkB family carbohydrate kinase DR996_00965 PF00251 Glycosyl hydrolases family 32 N-terminal domain DR996_00965 PF08244 Glycosyl hydrolases family 32 C terminal DR996_00975 PF03147 Ferredoxin-fold anticodon binding domain DR996_00975 PF01588 Putative tRNA binding domain DR996_00975 PF03484 tRNA synthetase B5 domain DR996_00975 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain DR996_00975 PF03483 B3/4 domain DR996_00980 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain DR996_00980 PF01409 tRNA synthetases class II core domain (F) DR996_00985 PF00990 Diguanylate cyclase, GGDEF domain DR996_00985 PF17158 Membrane-associated sensor, integral membrane domain DR996_01015 PF01906 Putative heavy-metal-binding DR996_01020 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DR996_01025 PF01042 Endoribonuclease L-PSP DR996_01045 PF00453 Ribosomal protein L20 DR996_01050 PF01632 Ribosomal protein L35 DR996_01055 PF05198 Translation initiation factor IF-3, N-terminal domain DR996_01055 PF00707 Translation initiation factor IF-3, C-terminal domain DR996_01060 PF02824 TGS domain DR996_01060 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DR996_01060 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DR996_01060 PF03129 Anticodon binding domain DR996_01075 PF00392 Bacterial regulatory proteins, gntR family DR996_01075 PF07702 UTRA domain DR996_01080 PF01979 Amidohydrolase family DR996_01085 PF00491 Arginase family DR996_01090 PF01175 Urocanase Rossmann-like domain DR996_01090 PF17392 Urocanase C-terminal domain DR996_01090 PF17391 Urocanase N-terminal domain DR996_01095 PF00221 Aromatic amino acid lyase DR996_01110 PF01565 FAD binding domain DR996_01110 PF02913 FAD linked oxidases, C-terminal domain DR996_01110 PF13183 4Fe-4S dicluster domain DR996_01125 PF00691 OmpA family DR996_01125 PF05736 OprF membrane domain DR996_01150 PF01259 SAICAR synthetase DR996_01155 PF09423 PhoD-like phosphatase DR996_01155 PF16655 PhoD-like phosphatase, N-terminal domain DR996_01165 PF02253 Phospholipase A1 DR996_01170 PF00270 DEAD/DEAH box helicase DR996_01170 PF04408 Helicase associated domain (HA2) DR996_01170 PF00271 Helicase conserved C-terminal domain DR996_01170 PF08482 ATP-dependent helicase C-terminal DR996_01175 PF00390 Malic enzyme, N-terminal domain DR996_01175 PF03949 Malic enzyme, NAD binding domain DR996_01180 PF02698 DUF218 domain DR996_01185 PF00939 Sodium:sulfate symporter transmembrane region DR996_01190 PF08448 PAS fold DR996_01190 PF00990 Diguanylate cyclase, GGDEF domain DR996_01200 PF00266 Aminotransferase class-V DR996_01210 PF07992 Pyridine nucleotide-disulphide oxidoreductase DR996_01215 PF00664 ABC transporter transmembrane region DR996_01215 PF00005 ABC transporter DR996_01220 PF00005 ABC transporter DR996_01220 PF00664 ABC transporter transmembrane region DR996_01225 PF00291 Pyridoxal-phosphate dependent enzyme DR996_01230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_01230 PF03466 LysR substrate binding domain DR996_01235 PF00563 EAL domain DR996_01235 PF12792 CSS motif domain associated with EAL DR996_01265 PF17151 Periplasmic sensor domain DR996_01265 PF00990 Diguanylate cyclase, GGDEF domain DR996_01275 PF00266 Aminotransferase class-V DR996_01285 PF00497 Bacterial extracellular solute-binding proteins, family 3 DR996_01285 PF00512 His Kinase A (phospho-acceptor) domain DR996_01285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_01300 PF04994 TfoX C-terminal domain DR996_01300 PF04993 TfoX N-terminal domain DR996_01315 PF03956 Lysine exporter LysO DR996_01325 PF00282 Pyridoxal-dependent decarboxylase conserved domain DR996_01330 PF01418 Helix-turn-helix domain, rpiR family DR996_01330 PF01380 SIS domain DR996_01335 PF00465 Iron-containing alcohol dehydrogenase DR996_01340 PF00462 Glutaredoxin DR996_01345 PF02080 TrkA-C domain DR996_01345 PF06826 Predicted Permease Membrane Region DR996_01350 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase DR996_01350 PF12241 Trans-2-enoyl-CoA reductase catalytic region DR996_01350 PF07055 Enoyl reductase FAD binding domain DR996_01355 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DR996_01355 PF02770 Acyl-CoA dehydrogenase, middle domain DR996_01355 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DR996_01355 PF09317 Domain of unknown function (DUF1974) DR996_01360 PF00440 Bacterial regulatory proteins, tetR family DR996_01360 PF16295 Tetracyclin repressor-like, C-terminal domain DR996_01365 PF02281 Transposase Tn5 dimerisation domain DR996_01365 PF14706 Transposase DNA-binding DR996_01365 PF01609 Transposase DDE domain DR996_01370 PF06965 Na+/H+ antiporter 1 DR996_01385 PF00005 ABC transporter DR996_01390 PF01554 MatE DR996_01395 PF13460 NAD(P)H-binding DR996_01395 PF11066 Protein of unknown function (DUF2867) DR996_01400 PF01734 Patatin-like phospholipase DR996_01410 PF07690 Major Facilitator Superfamily DR996_01415 PF00849 RNA pseudouridylate synthase DR996_01415 PF01479 S4 domain DR996_01420 PF00271 Helicase conserved C-terminal domain DR996_01420 PF04851 Type III restriction enzyme, res subunit DR996_01425 PF17155 Gammaproteobacterial periplasmic sensor domain DR996_01425 PF00990 Diguanylate cyclase, GGDEF domain DR996_01435 PF00072 Response regulator receiver domain DR996_01435 PF00486 Transcriptional regulatory protein, C terminal DR996_01440 PF00512 His Kinase A (phospho-acceptor) domain DR996_01440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_01440 PF00672 HAMP domain DR996_01450 PF00535 Glycosyl transferase family 2 DR996_01450 PF02709 N-terminal domain of galactosyltransferase DR996_01460 PF01386 Ribosomal L25p family DR996_01475 PF00149 Calcineurin-like phosphoesterase DR996_01475 PF02872 5'-nucleotidase, C-terminal domain DR996_01490 PF06945 Protein of unknown function (DUF1289) DR996_01500 PF01740 STAS domain DR996_01500 PF00916 Sulfate permease family DR996_01510 PF00072 Response regulator receiver domain DR996_01510 PF00196 Bacterial regulatory proteins, luxR family DR996_01515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_01515 PF00512 His Kinase A (phospho-acceptor) domain DR996_01525 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DR996_01525 PF07992 Pyridine nucleotide-disulphide oxidoreductase DR996_01535 PF09335 SNARE associated Golgi protein DR996_01540 PF13416 Bacterial extracellular solute-binding protein DR996_01545 PF00528 Binding-protein-dependent transport system inner membrane component DR996_01550 PF00005 ABC transporter DR996_01555 PF01066 CDP-alcohol phosphatidyltransferase DR996_01560 PF00158 Sigma-54 interaction domain DR996_01560 PF01590 GAF domain DR996_01565 PF03063 Prismane/CO dehydrogenase family DR996_01570 PF00175 Oxidoreductase NAD-binding domain DR996_01570 PF00970 Oxidoreductase FAD-binding domain DR996_01570 PF00111 2Fe-2S iron-sulfur cluster binding domain DR996_01580 PF00849 RNA pseudouridylate synthase DR996_01585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DR996_01585 PF00672 HAMP domain DR996_01585 PF12729 Four helix bundle sensory module for signal transduction DR996_01590 PF00209 Sodium:neurotransmitter symporter family DR996_01595 PF13091 PLD-like domain DR996_01595 PF13396 Phospholipase_D-nuclease N-terminal DR996_01600 PF01053 Cys/Met metabolism PLP-dependent enzyme DR996_01605 PF00561 alpha/beta hydrolase fold DR996_01610 PF03280 Proteobacterial lipase chaperone protein DR996_01615 PF03352 Methyladenine glycosylase DR996_01620 PF00873 AcrB/AcrD/AcrF family DR996_01625 PF13533 Biotin-lipoyl like DR996_01635 PF04024 PspC domain DR996_01640 PF06667 Phage shock protein B DR996_01645 PF04012 PspA/IM30 family DR996_01650 PF00158 Sigma-54 interaction domain DR996_01650 PF02954 Bacterial regulatory protein, Fis family DR996_01655 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DR996_01660 PF00528 Binding-protein-dependent transport system inner membrane component DR996_01665 PF00528 Binding-protein-dependent transport system inner membrane component DR996_01665 PF12911 N-terminal TM domain of oligopeptide transport permease C DR996_01670 PF00005 ABC transporter DR996_01670 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DR996_01675 PF00005 ABC transporter DR996_01685 PF01368 DHH family DR996_01685 PF02833 DHHA2 domain DR996_01700 PF18364 Molybdopterin oxidoreductase N-terminal domain DR996_01700 PF00384 Molybdopterin oxidoreductase DR996_01700 PF01568 Molydopterin dinucleotide binding domain DR996_01705 PF03264 NapC/NirT cytochrome c family, N-terminal region DR996_01710 PF06796 Periplasmic nitrate reductase protein NapE DR996_01715 PF03649 Uncharacterised protein family (UPF0014) DR996_01720 PF01226 Formate/nitrite transporter DR996_01745 PF02698 DUF218 domain DR996_01750 PF00265 Thymidine kinase DR996_01755 PF01406 tRNA synthetases class I (C) catalytic domain DR996_01755 PF09190 DALR domain DR996_01760 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DR996_01765 PF00149 Calcineurin-like phosphoesterase DR996_01770 PF08668 HDOD domain DR996_01770 PF00563 EAL domain DR996_01775 PF02810 SEC-C motif DR996_01780 PF01502 Phosphoribosyl-AMP cyclohydrolase DR996_01780 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase DR996_01785 PF00977 Histidine biosynthesis protein DR996_01790 PF00977 Histidine biosynthesis protein DR996_01795 PF00117 Glutamine amidotransferase class-I DR996_01800 PF08645 Polynucleotide kinase 3 phosphatase DR996_01800 PF00475 Imidazoleglycerol-phosphate dehydratase DR996_01805 PF00155 Aminotransferase class I and II DR996_01810 PF00815 Histidinol dehydrogenase DR996_01815 PF01634 ATP phosphoribosyltransferase DR996_01815 PF08029 HisG, C-terminal domain DR996_01820 PF03553 Na+/H+ antiporter family DR996_01825 PF00816 H-NS histone family DR996_01830 PF00294 pfkB family carbohydrate kinase DR996_01845 PF04356 Protein of unknown function (DUF489) DR996_01850 PF08328 Adenylosuccinate lyase C-terminal DR996_01850 PF00206 Lyase DR996_01860 PF16036 Chalcone isomerase-like DR996_01885 PF00106 short chain dehydrogenase DR996_01895 PF01435 Peptidase family M48 DR996_01910 PF08241 Methyltransferase domain DR996_01915 PF00155 Aminotransferase class I and II DR996_01920 PF06968 Biotin and Thiamin Synthesis associated domain DR996_01920 PF04055 Radical SAM superfamily DR996_01925 PF00202 Aminotransferase class-III DR996_01930 PF01258 Prokaryotic dksA/traR C4-type zinc finger DR996_01945 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DR996_01945 PF02403 Seryl-tRNA synthetase N-terminal domain DR996_01950 PF16193 AAA C-terminal domain DR996_01950 PF12002 MgsA AAA+ ATPase C terminal DR996_01950 PF00004 ATPase family associated with various cellular activities (AAA) DR996_01955 PF03548 Outer membrane lipoprotein carrier protein LolA DR996_01960 PF09397 Ftsk gamma domain DR996_01960 PF17854 FtsK alpha domain DR996_01960 PF13491 4TM region of DNA translocase FtsK/SpoIIIE DR996_01960 PF01580 FtsK/SpoIIIE family DR996_01965 PF01037 Lrp/AsnC ligand binding domain DR996_01970 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DR996_01970 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DR996_01980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_01980 PF03466 LysR substrate binding domain DR996_01990 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) DR996_02000 PF01081 KDPG and KHG aldolase DR996_02005 PF00294 pfkB family carbohydrate kinase DR996_02010 PF07883 Cupin domain DR996_02015 PF07940 Heparinase II/III-like protein DR996_02015 PF05426 Alginate lyase DR996_02020 PF07940 Heparinase II/III-like protein DR996_02020 PF05426 Alginate lyase DR996_02025 PF08787 Alginate lyase DR996_02040 PF01979 Amidohydrolase family DR996_02045 PF01752 Collagenase DR996_02045 PF04151 Bacterial pre-peptidase C-terminal domain DR996_02045 PF08453 Peptidase family M9 N-terminal DR996_02070 PF03372 Endonuclease/Exonuclease/phosphatase family DR996_02100 PF00579 tRNA synthetases class I (W and Y) DR996_02110 PF00141 Peroxidase DR996_02115 PF08787 Alginate lyase DR996_02125 PF00392 Bacterial regulatory proteins, gntR family DR996_02125 PF07729 FCD domain DR996_02135 PF07729 FCD domain DR996_02135 PF00392 Bacterial regulatory proteins, gntR family DR996_02140 PF00571 CBS domain DR996_02145 PF00929 Exonuclease DR996_02145 PF02811 PHP domain DR996_02145 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DR996_02145 PF14579 Helix-hairpin-helix motif DR996_02145 PF07733 Bacterial DNA polymerase III alpha NTPase domain DR996_02150 PF00892 EamA-like transporter family DR996_02155 PF00497 Bacterial extracellular solute-binding proteins, family 3 DR996_02155 PF01464 Transglycosylase SLT domain DR996_02170 PF00474 Sodium:solute symporter family DR996_02195 PF00005 ABC transporter DR996_02200 PF01032 FecCD transport family DR996_02205 PF01032 FecCD transport family DR996_02215 PF00593 TonB dependent receptor DR996_02215 PF07715 TonB-dependent Receptor Plug Domain DR996_02225 PF03606 C4-dicarboxylate anaerobic carrier DR996_02230 PF01546 Peptidase family M20/M25/M40 DR996_02230 PF07687 Peptidase dimerisation domain DR996_02235 PF07729 FCD domain DR996_02235 PF00392 Bacterial regulatory proteins, gntR family DR996_02245 PF00873 AcrB/AcrD/AcrF family DR996_02250 PF00529 HlyD membrane-fusion protein of T1SS DR996_02250 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DR996_02265 PF00672 HAMP domain DR996_02265 PF02743 Cache domain DR996_02265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DR996_02275 PF00528 Binding-protein-dependent transport system inner membrane component DR996_02280 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DR996_02285 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DR996_02285 PF00005 ABC transporter DR996_02290 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DR996_02290 PF00005 ABC transporter DR996_02295 PF01554 MatE DR996_02320 PF13545 Crp-like helix-turn-helix domain DR996_02320 PF00027 Cyclic nucleotide-binding domain DR996_02325 PF03831 PhnA domain DR996_02325 PF08274 PhnA Zinc-Ribbon DR996_02330 PF00232 Glycosyl hydrolase family 1 DR996_02335 PF00367 phosphotransferase system, EIIB DR996_02335 PF02378 Phosphotransferase system, EIIC DR996_02350 PF00884 Sulfatase DR996_02395 PF00176 SNF2 family N-terminal domain DR996_02395 PF00271 Helicase conserved C-terminal domain DR996_02435 PF04002 RadC-like JAB domain DR996_02450 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) DR996_02485 PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 DR996_02495 PF04984 Phage tail sheath protein subtilisin-like domain DR996_02495 PF17482 Phage tail sheath C-terminal domain DR996_02525 PF10124 Mu-like prophage major head subunit gpT DR996_02545 PF04233 Phage Mu protein F like protein DR996_02550 PF06074 Protein of unknown function (DUF935) DR996_02555 PF03237 Terminase-like family DR996_02585 PF06252 Protein of unknown function (DUF1018) DR996_02665 PF13693 Winged helix-turn-helix DNA-binding DR996_02695 PF13148 Protein of unknown function (DUF3987) DR996_02700 PF05930 Prophage CP4-57 regulatory protein (AlpA) DR996_02725 PF13356 Arm DNA-binding domain DR996_02725 PF00589 Phage integrase family DR996_02735 PF06610 L-alanine exporter DR996_02740 PF00072 Response regulator receiver domain DR996_02740 PF00512 His Kinase A (phospho-acceptor) domain DR996_02740 PF09308 LuxQ, periplasmic DR996_02740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_02750 PF03738 Glutathionylspermidine synthase preATP-grasp DR996_02760 PF03994 Domain of Unknown Function (DUF350) DR996_02770 PF02445 Quinolinate synthetase A protein DR996_02775 PF13174 Tetratricopeptide repeat DR996_02775 PF16331 TolA binding protein trimerisation DR996_02780 PF00691 OmpA family DR996_02785 PF07676 WD40-like Beta Propeller Repeat DR996_02785 PF04052 TolB amino-terminal domain DR996_02795 PF02472 Biopolymer transport protein ExbD/TolR DR996_02800 PF01618 MotA/TolQ/ExbB proton channel family DR996_02805 PF03061 Thioesterase superfamily DR996_02815 PF08173 Membrane bound YbgT-like protein DR996_02820 PF02322 Cytochrome bd terminal oxidase subunit II DR996_02825 PF01654 Cytochrome bd terminal oxidase subunit I DR996_02830 PF05491 RuvB C-terminal winged helix domain DR996_02830 PF05496 Holliday junction DNA helicase RuvB P-loop domain DR996_02830 PF17864 RuvB AAA lid domain DR996_02835 PF07499 RuvA, C-terminal domain DR996_02835 PF01330 RuvA N terminal domain DR996_02840 PF00672 HAMP domain DR996_02840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DR996_02840 PF02203 Tar ligand binding domain homologue DR996_02845 PF02075 Crossover junction endodeoxyribonuclease RuvC DR996_02850 PF02938 GAD domain DR996_02850 PF00152 tRNA synthetases class II (D, K and N) DR996_02850 PF01336 OB-fold nucleic acid binding domain DR996_02855 PF01904 Protein of unknown function DUF72 DR996_02860 PF13649 Methyltransferase domain DR996_02865 PF08003 Protein of unknown function (DUF1698) DR996_02875 PF08443 RimK-like ATP-grasp domain DR996_02875 PF18030 RimK PreATP-grasp domain DR996_02895 PF00732 GMC oxidoreductase DR996_02895 PF05199 GMC oxidoreductase DR996_02900 PF13193 AMP-binding enzyme C-terminal domain DR996_02900 PF00501 AMP-binding enzyme DR996_02905 PF00171 Aldehyde dehydrogenase family DR996_02910 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term DR996_02910 PF12833 Helix-turn-helix domain DR996_02915 PF16330 MukB hinge domain DR996_02915 PF04310 MukB N-terminal DR996_02920 PF04288 MukE-like family DR996_02925 PF17192 MukF middle domain DR996_02925 PF17193 MukF C-terminal domain DR996_02925 PF03882 MukF winged-helix domain DR996_02930 PF13847 Methyltransferase domain DR996_02935 PF02698 DUF218 domain DR996_02940 PF00072 Response regulator receiver domain DR996_02940 PF00486 Transcriptional regulatory protein, C terminal DR996_02945 PF02613 Nitrate reductase delta subunit DR996_02950 PF00356 Bacterial regulatory proteins, lacI family DR996_02955 PF04993 TfoX N-terminal domain DR996_02955 PF04994 TfoX C-terminal domain DR996_02975 PF00534 Glycosyl transferases group 1 DR996_02975 PF08323 Starch synthase catalytic domain DR996_02980 PF00483 Nucleotidyl transferase DR996_02985 PF01131 DNA topoisomerase DR996_02985 PF08272 Topoisomerase I zinc-ribbon-like DR996_02985 PF01396 Topoisomerase DNA binding C4 zinc finger DR996_02985 PF01751 Toprim domain DR996_02990 PF10692 Protein of unknown function (DUF2498) DR996_02995 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DR996_03005 PF03588 Leucyl/phenylalanyl-tRNA protein transferase DR996_03010 PF04376 Arginine-tRNA-protein transferase, N terminus DR996_03010 PF04377 Arginine-tRNA-protein transferase, C terminus DR996_03015 PF01176 Translation initiation factor 1A / IF-1 DR996_03020 PF10431 C-terminal, D2-small domain, of ClpB protein DR996_03020 PF00004 ATPase family associated with various cellular activities (AAA) DR996_03020 PF02861 Clp amino terminal domain, pathogenicity island component DR996_03020 PF17871 AAA lid domain DR996_03020 PF07724 AAA domain (Cdc48 subfamily) DR996_03025 PF02617 ATP-dependent Clp protease adaptor protein ClpS DR996_03030 PF00313 'Cold-shock' DNA-binding domain DR996_03035 PF03971 Monomeric isocitrate dehydrogenase DR996_03040 PF00849 RNA pseudouridylate synthase DR996_03045 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) DR996_03050 PF13609 Gram-negative porin DR996_03055 PF06733 DEAD_2 DR996_03055 PF13307 Helicase C-terminal domain DR996_03060 PF01925 Sulfite exporter TauE/SafE DR996_03065 PF07445 Primosomal replication protein priC DR996_03070 PF10689 Protein of unknown function (DUF2496) DR996_03075 PF00672 HAMP domain DR996_03075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DR996_03080 PF03372 Endonuclease/Exonuclease/phosphatase family DR996_03085 PF00005 ABC transporter DR996_03085 PF00664 ABC transporter transmembrane region DR996_03090 PF00529 HlyD membrane-fusion protein of T1SS DR996_03090 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DR996_03100 PF00528 Binding-protein-dependent transport system inner membrane component DR996_03105 PF00528 Binding-protein-dependent transport system inner membrane component DR996_03110 PF00497 Bacterial extracellular solute-binding proteins, family 3 DR996_03115 PF00005 ABC transporter DR996_03130 PF01228 Glycine radical DR996_03130 PF02901 Pyruvate formate lyase-like DR996_03140 PF04055 Radical SAM superfamily DR996_03150 PF03887 YfbU domain DR996_03160 PF06798 PrkA serine protein kinase C-terminal domain DR996_03160 PF08298 PrkA AAA domain DR996_03165 PF04285 Protein of unknown function (DUF444) DR996_03170 PF04293 SpoVR like protein DR996_03175 PF02348 Cytidylyltransferase DR996_03180 PF03966 Trm112p-like protein DR996_03185 PF02606 Tetraacyldisaccharide-1-P 4'-kinase DR996_03190 PF00664 ABC transporter transmembrane region DR996_03190 PF00005 ABC transporter DR996_03195 PF03772 Competence protein DR996_03195 PF00753 Metallo-beta-lactamase superfamily DR996_03205 PF02687 FtsX-like permease family DR996_03205 PF12704 MacB-like periplasmic core domain DR996_03210 PF00005 ABC transporter DR996_03215 PF02687 FtsX-like permease family DR996_03215 PF12704 MacB-like periplasmic core domain DR996_03225 PF02559 CarD-like/TRCF domain DR996_03225 PF00271 Helicase conserved C-terminal domain DR996_03225 PF00270 DEAD/DEAH box helicase DR996_03225 PF03461 TRCF domain DR996_03225 PF17757 UvrB interaction domain DR996_03240 PF07992 Pyridine nucleotide-disulphide oxidoreductase DR996_03245 PF05728 Uncharacterised protein family (UPF0227) DR996_03255 PF13036 Peptidoglycan-synthase activator LpoB DR996_03255 PF08139 Prokaryotic membrane lipoprotein lipid attachment site DR996_03270 PF01230 HIT domain DR996_03275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DR996_03275 PF00672 HAMP domain DR996_03285 PF01048 Phosphorylase superfamily DR996_03290 PF00403 Heavy-metal-associated domain DR996_03295 PF01554 MatE DR996_03300 PF00571 CBS domain DR996_03300 PF00478 IMP dehydrogenase / GMP reductase domain DR996_03310 PF00037 4Fe-4S binding domain DR996_03310 PF11953 Domain of unknown function (DUF3470) DR996_03315 PF08032 RNA 2'-O ribose methyltransferase substrate binding DR996_03315 PF00588 SpoU rRNA Methylase family DR996_03320 PF00690 Cation transporter/ATPase, N-terminus DR996_03320 PF00689 Cation transporting ATPase, C-terminus DR996_03330 PF17152 Periplasmic sensor domain DR996_03330 PF00990 Diguanylate cyclase, GGDEF domain DR996_03340 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DR996_03345 PF09619 Type III secretion system lipoprotein chaperone (YscW) DR996_03360 PF01037 Lrp/AsnC ligand binding domain DR996_03360 PF13404 AsnC-type helix-turn-helix domain DR996_03365 PF00291 Pyridoxal-phosphate dependent enzyme DR996_03380 PF00873 AcrB/AcrD/AcrF family DR996_03385 PF13533 Biotin-lipoyl like DR996_03430 PF07690 Major Facilitator Superfamily DR996_03435 PF03601 Conserved hypothetical protein 698 DR996_03445 PF03466 LysR substrate binding domain DR996_03445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_03450 PF02378 Phosphotransferase system, EIIC DR996_03450 PF00367 phosphotransferase system, EIIB DR996_03450 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DR996_03455 PF00501 AMP-binding enzyme DR996_03455 PF13193 AMP-binding enzyme C-terminal domain DR996_03460 PF13378 Enolase C-terminal domain-like DR996_03465 PF00378 Enoyl-CoA hydratase/isomerase DR996_03470 PF12697 Alpha/beta hydrolase family DR996_03475 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DR996_03475 PF16582 Middle domain of thiamine pyrophosphate DR996_03475 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DR996_03480 PF00425 chorismate binding enzyme DR996_03485 PF00155 Aminotransferase class I and II DR996_03495 PF01966 HD domain DR996_03495 PF13286 Phosphohydrolase-associated domain DR996_03515 PF13145 PPIC-type PPIASE domain DR996_03520 PF00216 Bacterial DNA-binding protein DR996_03525 PF02190 ATP-dependent protease La (LON) substrate-binding domain DR996_03525 PF05362 Lon protease (S16) C-terminal proteolytic domain DR996_03525 PF00004 ATPase family associated with various cellular activities (AAA) DR996_03530 PF07724 AAA domain (Cdc48 subfamily) DR996_03530 PF10431 C-terminal, D2-small domain, of ClpB protein DR996_03530 PF06689 ClpX C4-type zinc finger DR996_03535 PF00574 Clp protease DR996_03540 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DR996_03540 PF05697 Bacterial trigger factor protein (TF) DR996_03540 PF05698 Bacterial trigger factor protein (TF) C-terminus DR996_03545 PF02743 Cache domain DR996_03545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_03545 PF00512 His Kinase A (phospho-acceptor) domain DR996_03550 PF02954 Bacterial regulatory protein, Fis family DR996_03550 PF00072 Response regulator receiver domain DR996_03550 PF00158 Sigma-54 interaction domain DR996_03560 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DR996_03565 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component DR996_03570 PF03480 Bacterial extracellular solute-binding protein, family 7 DR996_03575 PF02696 Uncharacterized ACR, YdiU/UPF0061 family DR996_03590 PF02386 Cation transport protein DR996_03595 PF02254 TrkA-N domain DR996_03595 PF02080 TrkA-C domain DR996_03600 PF02028 BCCT, betaine/carnitine/choline family transporter DR996_03605 PF00271 Helicase conserved C-terminal domain DR996_03605 PF00270 DEAD/DEAH box helicase DR996_03610 PF00571 CBS domain DR996_03610 PF03471 Transporter associated domain DR996_03610 PF01595 Cyclin M transmembrane N-terminal domain DR996_03615 PF07715 TonB-dependent Receptor Plug Domain DR996_03615 PF00593 TonB dependent receptor DR996_03630 PF00975 Thioesterase domain DR996_03630 PF00668 Condensation domain DR996_03630 PF00975 Thioesterase domain DR996_03630 PF00550 Phosphopantetheine attachment site DR996_03630 PF00501 AMP-binding enzyme DR996_03630 PF13193 AMP-binding enzyme C-terminal domain DR996_03630 PF00501 AMP-binding enzyme DR996_03630 PF13193 AMP-binding enzyme C-terminal domain DR996_03630 PF00668 Condensation domain DR996_03630 PF00550 Phosphopantetheine attachment site DR996_03635 PF00857 Isochorismatase family DR996_03635 PF00550 Phosphopantetheine attachment site DR996_03640 PF13193 AMP-binding enzyme C-terminal domain DR996_03640 PF00501 AMP-binding enzyme DR996_03645 PF00425 chorismate binding enzyme DR996_03665 PF01209 ubiE/COQ5 methyltransferase family DR996_03675 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DR996_03675 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DR996_03680 PF01773 Na+ dependent nucleoside transporter N-terminus DR996_03680 PF07670 Nucleoside recognition DR996_03680 PF07662 Na+ dependent nucleoside transporter C-terminus DR996_03685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_03685 PF03466 LysR substrate binding domain DR996_03690 PF13406 Transglycosylase SLT domain DR996_03695 PF05166 YcgL domain DR996_03700 PF05209 Septum formation inhibitor MinC, N-terminal domain DR996_03700 PF03775 Septum formation inhibitor MinC, C-terminal domain DR996_03705 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DR996_03710 PF03776 Septum formation topological specificity factor MinE DR996_03715 PF01612 3'-5' exonuclease DR996_03715 PF00570 HRDC domain DR996_03720 PF00501 AMP-binding enzyme DR996_03720 PF13193 AMP-binding enzyme C-terminal domain DR996_03725 PF00561 alpha/beta hydrolase fold DR996_03730 PF03843 Outer membrane lipoprotein Slp family DR996_03740 PF00814 Glycoprotease family DR996_03745 PF04851 Type III restriction enzyme, res subunit DR996_03745 PF13307 Helicase C-terminal domain DR996_03750 PF01842 ACT domain DR996_03750 PF00551 Formyl transferase DR996_03755 PF00089 Trypsin DR996_03765 PF06185 YecM protein DR996_03775 PF05746 DALR anticodon binding domain DR996_03775 PF03485 Arginyl tRNA synthetase N terminal domain DR996_03775 PF00750 tRNA synthetases class I (R) DR996_03790 PF02421 Ferrous iron transport protein B DR996_03790 PF07670 Nucleoside recognition DR996_03790 PF17910 FeoB cytosolic helical domain DR996_03790 PF07664 Ferrous iron transport protein B C terminus DR996_03795 PF04023 FeoA domain DR996_03800 PF12833 Helix-turn-helix domain DR996_03800 PF02311 AraC-like ligand binding domain DR996_03805 PF01297 Zinc-uptake complex component A periplasmic DR996_03810 PF00005 ABC transporter DR996_03815 PF00950 ABC 3 transport family DR996_03820 PF00549 CoA-ligase DR996_03820 PF02629 CoA binding domain DR996_03825 PF00549 CoA-ligase DR996_03825 PF08442 ATP-grasp domain DR996_03830 PF02817 e3 binding domain DR996_03830 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DR996_03830 PF00364 Biotin-requiring enzyme DR996_03835 PF16870 2-oxoglutarate dehydrogenase C-terminal DR996_03835 PF00676 Dehydrogenase E1 component DR996_03835 PF16078 2-oxoglutarate dehydrogenase N-terminus DR996_03835 PF02779 Transketolase, pyrimidine binding domain DR996_03840 PF13085 2Fe-2S iron-sulfur cluster binding domain DR996_03845 PF02910 Fumarate reductase flavoprotein C-term DR996_03845 PF00890 FAD binding domain DR996_03850 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DR996_03855 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DR996_03860 PF00285 Citrate synthase, C-terminal domain DR996_03865 PF01784 NIF3 (NGG1p interacting factor 3) DR996_03880 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DR996_03880 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DR996_03880 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DR996_03880 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DR996_03890 PF00561 alpha/beta hydrolase fold DR996_03900 PF00258 Flavodoxin DR996_03910 PF01475 Ferric uptake regulator family DR996_03915 PF08334 Type II secretion system (T2SS), protein G DR996_03915 PF07963 Prokaryotic N-terminal methylation motif DR996_03920 PF00749 tRNA synthetases class I (E and Q), catalytic domain DR996_03920 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain DR996_03925 PF02378 Phosphotransferase system, EIIC DR996_03925 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DR996_03925 PF00367 phosphotransferase system, EIIB DR996_03935 PF01979 Amidohydrolase family DR996_03940 PF01047 MarR family DR996_03940 PF00480 ROK family DR996_03945 PF00999 Sodium/hydrogen exchanger family DR996_03945 PF02254 TrkA-N domain DR996_03950 PF13537 Glutamine amidotransferase domain DR996_03950 PF00733 Asparagine synthase DR996_03955 PF02357 Transcription termination factor nusG DR996_03960 PF00854 POT family DR996_03965 PF00762 Ferrochelatase DR996_03970 PF05191 Adenylate kinase, active site lid DR996_03975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_03975 PF00183 Hsp90 protein DR996_03980 PF00486 Transcriptional regulatory protein, C terminal DR996_03985 PF17323 Trans-membrane regulatory protein ToxS DR996_04000 PF12850 Calcineurin-like phosphoesterase superfamily domain DR996_04020 PF07556 Protein of unknown function (DUF1538) DR996_04025 PF07556 Protein of unknown function (DUF1538) DR996_04030 PF01370 NAD dependent epimerase/dehydratase family DR996_04030 PF08338 Domain of unknown function (DUF1731) DR996_04035 PF00106 short chain dehydrogenase DR996_04045 PF00085 Thioredoxin DR996_04055 PF01270 Glycosyl hydrolases family 8 DR996_04060 PF03170 Bacterial cellulose synthase subunit DR996_04065 PF03552 Cellulose synthase DR996_04065 PF07238 PilZ domain DR996_04065 PF00535 Glycosyl transferase family 2 DR996_04070 PF06564 Cellulose biosynthesis protein BcsQ DR996_04085 PF11658 Cellulose biosynthesis protein BcsG DR996_04090 PF16200 C-terminal region of band_7 DR996_04090 PF01145 SPFH domain / Band 7 family DR996_04120 PF00533 BRCA1 C Terminus (BRCT) domain DR996_04120 PF01653 NAD-dependent DNA ligase adenylation domain DR996_04120 PF12826 Helix-hairpin-helix motif DR996_04120 PF03119 NAD-dependent DNA ligase C4 zinc finger domain DR996_04120 PF03120 NAD-dependent DNA ligase OB-fold domain DR996_04125 PF04354 ZipA, C-terminal FtsZ-binding domain DR996_04135 PF00291 Pyridoxal-phosphate dependent enzyme DR996_04145 PF00381 PTS HPr component phosphorylation site DR996_04150 PF05524 PEP-utilising enzyme, N-terminal DR996_04150 PF00391 PEP-utilising enzyme, mobile domain DR996_04150 PF02896 PEP-utilising enzyme, TIM barrel domain DR996_04155 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DR996_04160 PF07196 Flagellin hook IN motif DR996_04160 PF00700 Bacterial flagellin C-terminal helical region DR996_04160 PF00669 Bacterial flagellin N-terminal helical region DR996_04165 PF00700 Bacterial flagellin C-terminal helical region DR996_04165 PF00669 Bacterial flagellin N-terminal helical region DR996_04165 PF07196 Flagellin hook IN motif DR996_04170 PF00700 Bacterial flagellin C-terminal helical region DR996_04170 PF00669 Bacterial flagellin N-terminal helical region DR996_04170 PF07196 Flagellin hook IN motif DR996_04180 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DR996_04180 PF07196 Flagellin hook IN motif DR996_04185 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DR996_04185 PF10135 Rod binding protein DR996_04190 PF02119 Flagellar P-ring protein DR996_04195 PF02107 Flagellar L-ring protein DR996_04200 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DR996_04200 PF00460 Flagella basal body rod protein DR996_04205 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DR996_04205 PF00460 Flagella basal body rod protein DR996_04210 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DR996_04210 PF00460 Flagella basal body rod protein DR996_04210 PF07559 Flagellar basal body protein FlaE DR996_04215 PF13860 FlgD Ig-like domain DR996_04215 PF03963 Flagellar hook capping protein - N-terminal region DR996_04215 PF13861 FlgD Tudor-like domain DR996_04220 PF00460 Flagella basal body rod protein DR996_04220 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DR996_04225 PF00460 Flagella basal body rod protein DR996_04230 PF01739 CheR methyltransferase, SAM binding domain DR996_04230 PF03705 CheR methyltransferase, all-alpha domain DR996_04235 PF00072 Response regulator receiver domain DR996_04235 PF01584 CheW-like domain DR996_04280 PF01389 OmpA-like transmembrane domain DR996_04280 PF00691 OmpA family DR996_04285 PF00749 tRNA synthetases class I (E and Q), catalytic domain DR996_04290 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) DR996_04295 PF13609 Gram-negative porin DR996_04305 PF00403 Heavy-metal-associated domain DR996_04320 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain DR996_04320 PF00728 Glycosyl hydrolase family 20, catalytic domain DR996_04320 PF02838 Glycosyl hydrolase family 20, domain 2 DR996_04320 PF03173 Putative carbohydrate binding domain DR996_04340 PF01713 Smr domain DR996_04345 PF00849 RNA pseudouridylate synthase DR996_04345 PF01479 S4 domain DR996_04350 PF04073 Aminoacyl-tRNA editing domain DR996_04355 PF00149 Calcineurin-like phosphoesterase DR996_04355 PF02872 5'-nucleotidase, C-terminal domain DR996_04360 PF00793 DAHP synthetase I family DR996_04365 PF13369 Transglutaminase-like superfamily DR996_04370 PF04247 Invasion gene expression up-regulator, SirB DR996_04375 PF13847 Methyltransferase domain DR996_04375 PF17827 PrmC N-terminal domain DR996_04380 PF03462 PCRF domain DR996_04380 PF00472 RF-1 domain DR996_04385 PF01488 Shikimate / quinate 5-dehydrogenase DR996_04385 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain DR996_04385 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain DR996_04390 PF03550 Outer membrane lipoprotein LolB DR996_04395 PF08544 GHMP kinases C terminal DR996_04395 PF00288 GHMP kinases N terminal domain DR996_04400 PF14572 Phosphoribosyl synthetase-associated domain DR996_04400 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DR996_04405 PF01195 Peptidyl-tRNA hydrolase DR996_04410 PF01926 50S ribosome-binding GTPase DR996_04410 PF06071 Protein of unknown function (DUF933) DR996_04530 PF01494 FAD binding domain DR996_04540 PF01938 TRAM domain DR996_04540 PF04055 Radical SAM superfamily DR996_04540 PF00919 Uncharacterized protein family UPF0004 DR996_04545 PF02562 PhoH-like protein DR996_04550 PF02130 Uncharacterized protein family UPF0054 DR996_04555 PF03471 Transporter associated domain DR996_04555 PF00571 CBS domain DR996_04560 PF00795 Carbon-nitrogen hydrolase DR996_04565 PF07295 Zinc-ribbon containing domain DR996_04570 PF13603 Leucyl-tRNA synthetase, Domain 2 DR996_04570 PF08264 Anticodon-binding domain of tRNA DR996_04570 PF00133 tRNA synthetases class I (I, L, M and V) DR996_04575 PF04390 Lipopolysaccharide-assembly DR996_04580 PF06144 DNA polymerase III, delta subunit DR996_04580 PF14840 Processivity clamp loader gamma complex DNA pol III C-term DR996_04590 PF02590 Predicted SPOUT methyltransferase DR996_04595 PF03717 Penicillin-binding Protein dimerisation domain DR996_04595 PF00905 Penicillin binding protein transpeptidase domain DR996_04600 PF01098 Cell cycle protein DR996_04605 PF03330 Lytic transglycolase DR996_04605 PF05036 Sporulation related domain DR996_04610 PF07943 Penicillin-binding protein 5, C-terminal domain DR996_04610 PF00768 D-alanyl-D-alanine carboxypeptidase DR996_04615 PF04359 Protein of unknown function (DUF493) DR996_04620 PF03099 Biotin/lipoate A/B protein ligase family DR996_04625 PF04055 Radical SAM superfamily DR996_04625 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family DR996_04630 PF00464 Serine hydroxymethyltransferase DR996_04635 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DR996_04635 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DR996_04650 PF16657 Maltogenic Amylase, C-terminal domain DR996_04650 PF00128 Alpha amylase, catalytic domain DR996_04655 PF00367 phosphotransferase system, EIIB DR996_04655 PF02378 Phosphotransferase system, EIIC DR996_04660 PF00356 Bacterial regulatory proteins, lacI family DR996_04670 PF09383 NIL domain DR996_04670 PF00005 ABC transporter DR996_04675 PF00528 Binding-protein-dependent transport system inner membrane component DR996_04680 PF03180 NLPA lipoprotein DR996_04690 PF02872 5'-nucleotidase, C-terminal domain DR996_04690 PF00149 Calcineurin-like phosphoesterase DR996_04695 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) DR996_04700 PF07348 Syd protein (SUKH-2) DR996_04705 PF14489 QueF-like protein DR996_04705 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term DR996_04715 PF00990 Diguanylate cyclase, GGDEF domain DR996_04715 PF00072 Response regulator receiver domain DR996_04720 PF03641 Possible lysine decarboxylase DR996_04720 PF11892 Domain of unknown function (DUF3412) DR996_04720 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases DR996_04725 PF01367 5'-3' exonuclease, C-terminal SAM fold DR996_04725 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DR996_04730 PF18125 RlmM ferredoxin-like domain DR996_04730 PF01728 FtsJ-like methyltransferase DR996_04735 PF04241 Protein of unknown function (DUF423) DR996_04745 PF03466 LysR substrate binding domain DR996_04745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_04750 PF02568 Thiamine biosynthesis protein (ThiI) DR996_04750 PF02926 THUMP domain DR996_04755 PF13677 Membrane MotB of proton-channel complex MotA/MotB DR996_04755 PF00691 OmpA family DR996_04755 PF13677 Membrane MotB of proton-channel complex MotA/MotB DR996_04755 PF00691 OmpA family DR996_04760 PF01618 MotA/TolQ/ExbB proton channel family DR996_04765 PF02609 Exonuclease VII small subunit DR996_04770 PF00348 Polyprenyl synthetase DR996_04775 PF02779 Transketolase, pyrimidine binding domain DR996_04775 PF02780 Transketolase, C-terminal domain DR996_04775 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DR996_04780 PF04608 Phosphatidylglycerophosphatase A DR996_04785 PF00586 AIR synthase related protein, N-terminal domain DR996_04785 PF02769 AIR synthase related protein, C-terminal domain DR996_04790 PF01029 NusB family DR996_04795 PF00885 6,7-dimethyl-8-ribityllumazine synthase DR996_04800 PF00925 GTP cyclohydrolase II DR996_04800 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DR996_04805 PF00677 Lumazine binding domain DR996_04810 PF01872 RibD C-terminal domain DR996_04810 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DR996_04815 PF03477 ATP cone domain DR996_04820 PF00171 Aldehyde dehydrogenase family DR996_04825 PF01472 PUA domain DR996_04825 PF00696 Amino acid kinase family DR996_04830 PF07417 Sigma factor-binding transcriptional regulator Crl DR996_04840 PF00156 Phosphoribosyl transferase domain DR996_04845 PF00860 Permease family DR996_04850 PF07687 Peptidase dimerisation domain DR996_04850 PF01546 Peptidase family M20/M25/M40 DR996_04865 PF07715 TonB-dependent Receptor Plug Domain DR996_04865 PF00593 TonB dependent receptor DR996_04880 PF02769 AIR synthase related protein, C-terminal domain DR996_04880 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DR996_04880 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal DR996_04885 PF00497 Bacterial extracellular solute-binding proteins, family 3 DR996_04885 PF01464 Transglycosylase SLT domain DR996_04895 PF14437 MafB19-like deaminase DR996_04900 PF03806 AbgT putative transporter family DR996_04920 PF07963 Prokaryotic N-terminal methylation motif DR996_04920 PF00114 Pilin (bacterial filament) DR996_04925 PF07963 Prokaryotic N-terminal methylation motif DR996_04925 PF00114 Pilin (bacterial filament) DR996_04930 PF14706 Transposase DNA-binding DR996_04930 PF02281 Transposase Tn5 dimerisation domain DR996_04930 PF01609 Transposase DDE domain DR996_04935 PF01556 DnaJ C terminal domain DR996_04935 PF00684 DnaJ central domain DR996_04935 PF00226 DnaJ domain DR996_04940 PF00012 Hsp70 protein DR996_04950 PF00375 Sodium:dicarboxylate symporter family DR996_04955 PF01025 GrpE DR996_04960 PF01513 ATP-NAD kinase DR996_04970 PF02463 RecF/RecN/SMC N terminal domain DR996_04975 PF00583 Acetyltransferase (GNAT) family DR996_04980 PF04355 SmpA / OmlA family DR996_04990 PF03658 RnfH family Ubiquitin DR996_04995 PF03364 Polyketide cyclase / dehydrase and lipid transport DR996_05000 PF01668 SmpB protein DR996_05010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_05010 PF03466 LysR substrate binding domain DR996_05015 PF12805 FUSC-like inner membrane protein yccS DR996_05035 PF00202 Aminotransferase class-III DR996_05040 PF01053 Cys/Met metabolism PLP-dependent enzyme DR996_05055 PF03466 LysR substrate binding domain DR996_05055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_05060 PF01266 FAD dependent oxidoreductase DR996_05065 PF01235 Sodium:alanine symporter family DR996_05070 PF01184 GPR1/FUN34/yaaH family DR996_05075 PF06483 Chitinase C DR996_05075 PF00704 Glycosyl hydrolases family 18 DR996_05080 PF03553 Na+/H+ antiporter family DR996_05085 PF02540 NAD synthase DR996_05085 PF00117 Glutamine amidotransferase class-I DR996_05085 PF00958 GMP synthase C terminal domain DR996_05090 PF00478 IMP dehydrogenase / GMP reductase domain DR996_05090 PF00571 CBS domain DR996_05095 PF02601 Exonuclease VII, large subunit DR996_05095 PF13742 OB-fold nucleic acid binding domain DR996_05105 PF13185 GAF domain DR996_05105 PF00990 Diguanylate cyclase, GGDEF domain DR996_05115 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DR996_05115 PF01926 50S ribosome-binding GTPase DR996_05120 PF13360 PQQ-like domain DR996_05125 PF09976 Tetratricopeptide repeat-like domain DR996_05130 PF13393 Histidyl-tRNA synthetase DR996_05130 PF03129 Anticodon binding domain DR996_05135 PF04551 GcpE protein DR996_05140 PF13464 Domain of unknown function (DUF4115) DR996_05145 PF04055 Radical SAM superfamily DR996_05150 PF00334 Nucleoside diphosphate kinase DR996_05155 PF00883 Cytosol aminopeptidase family, catalytic domain DR996_05155 PF12404 Peptidase DR996_05160 PF04384 Iron-sulphur cluster assembly DR996_05165 PF00111 2Fe-2S iron-sulfur cluster binding domain DR996_05170 PF00012 Hsp70 protein DR996_05175 PF07743 HSCB C-terminal oligomerisation domain DR996_05175 PF00226 DnaJ domain DR996_05180 PF01521 Iron-sulphur cluster biosynthesis DR996_05185 PF01592 NifU-like N terminal domain DR996_05190 PF00266 Aminotransferase class-V DR996_05195 PF02082 Transcriptional regulator DR996_05200 PF00588 SpoU rRNA Methylase family DR996_05205 PF00459 Inositol monophosphatase family DR996_05210 PF02355 Protein export membrane protein DR996_05210 PF07549 SecD/SecF GG Motif DR996_05215 PF07549 SecD/SecF GG Motif DR996_05215 PF13721 SecD export protein N-terminal TM region DR996_05215 PF02355 Protein export membrane protein DR996_05220 PF02699 Preprotein translocase subunit DR996_05225 PF01702 Queuine tRNA-ribosyltransferase DR996_05230 PF02547 Queuosine biosynthesis protein DR996_05245 PF00571 CBS domain DR996_05250 PF00463 Isocitrate lyase family DR996_05255 PF01274 Malate synthase DR996_05260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_05260 PF03466 LysR substrate binding domain DR996_05265 PF00578 AhpC/TSA family DR996_05265 PF10417 C-terminal domain of 1-Cys peroxiredoxin DR996_05270 PF03932 CutC family DR996_05275 PF03976 Polyphosphate kinase 2 (PPK2) DR996_05280 PF03466 LysR substrate binding domain DR996_05280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_05295 PF01895 PhoU domain DR996_05300 PF00005 ABC transporter DR996_05305 PF00528 Binding-protein-dependent transport system inner membrane component DR996_05310 PF00528 Binding-protein-dependent transport system inner membrane component DR996_05315 PF17941 Polyphosphate kinase C-terminal domain 1 DR996_05315 PF13089 Polyphosphate kinase N-terminal domain DR996_05315 PF02503 Polyphosphate kinase middle domain DR996_05315 PF13090 Polyphosphate kinase C-terminal domain 2 DR996_05320 PF02541 Ppx/GppA phosphatase family DR996_05325 PF12849 PBP superfamily domain DR996_05330 PF11808 Phosphate regulon sensor protein PhoR DR996_05330 PF00512 His Kinase A (phospho-acceptor) domain DR996_05330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_05330 PF00989 PAS fold DR996_05335 PF00486 Transcriptional regulatory protein, C terminal DR996_05335 PF00072 Response regulator receiver domain DR996_05340 PF04381 Putative exonuclease, RdgC DR996_05350 PF00037 4Fe-4S binding domain DR996_05360 PF03411 Penicillin-insensitive murein endopeptidase DR996_05375 PF03606 C4-dicarboxylate anaerobic carrier DR996_05380 PF07687 Peptidase dimerisation domain DR996_05380 PF01546 Peptidase family M20/M25/M40 DR996_05410 PF00075 RNase H DR996_05450 PF02384 N-6 DNA Methylase DR996_05450 PF12161 HsdM N-terminal domain DR996_05455 PF01420 Type I restriction modification DNA specificity domain DR996_05465 PF12008 Type I restriction and modification enzyme - subunit R C terminal DR996_05465 PF18766 SWI2/SNF2 ATPase DR996_05465 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) DR996_05495 PF16671 Actin cross-linking domain DR996_05495 PF04717 Type VI secretion system, phage-baseplate injector DR996_05505 PF05638 Type VI secretion system effector, Hcp DR996_05540 PF10431 C-terminal, D2-small domain, of ClpB protein DR996_05540 PF17871 AAA lid domain DR996_05540 PF07724 AAA domain (Cdc48 subfamily) DR996_05540 PF00004 ATPase family associated with various cellular activities (AAA) DR996_05650 PF04002 RadC-like JAB domain DR996_05655 PF03981 Ubiquinol-cytochrome C chaperone DR996_05655 PF13099 Domain of unknown function (DUF3944) DR996_05665 PF00589 Phage integrase family DR996_05665 PF13356 Arm DNA-binding domain DR996_05705 PF00004 ATPase family associated with various cellular activities (AAA) DR996_05705 PF10431 C-terminal, D2-small domain, of ClpB protein DR996_05705 PF07724 AAA domain (Cdc48 subfamily) DR996_05705 PF17871 AAA lid domain DR996_05705 PF02861 Clp amino terminal domain, pathogenicity island component DR996_05715 PF00849 RNA pseudouridylate synthase DR996_05715 PF01479 S4 domain DR996_05720 PF13525 Outer membrane lipoprotein DR996_05725 PF01464 Transglycosylase SLT domain DR996_05730 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DR996_05735 PF01817 Chorismate mutase type II DR996_05735 PF00800 Prephenate dehydratase DR996_05740 PF01931 Protein of unknown function DUF84 DR996_05745 PF01371 Trp repressor protein DR996_05750 PF14718 Soluble lytic murein transglycosylase L domain DR996_05750 PF01464 Transglycosylase SLT domain DR996_05755 PF12848 ABC transporter DR996_05755 PF00005 ABC transporter DR996_05760 PF07238 PilZ domain DR996_05765 PF04225 Opacity-associated protein A LysM-like domain DR996_05765 PF01551 Peptidase family M23 DR996_05770 PF02153 Prephenate dehydrogenase DR996_05770 PF01817 Chorismate mutase type II DR996_05775 PF00793 DAHP synthetase I family DR996_05780 PF00933 Glycosyl hydrolase family 3 N terminal domain DR996_05785 PF03702 Anhydro-N-acetylmuramic acid kinase DR996_05790 PF01380 SIS domain DR996_05805 PF02554 Carbon starvation protein CstA DR996_05810 PF07694 5TMR of 5TMR-LYT DR996_05810 PF06580 Histidine kinase DR996_05815 PF04397 LytTr DNA-binding domain DR996_05815 PF00072 Response regulator receiver domain DR996_05820 PF02401 LytB protein DR996_05825 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DR996_05830 PF01252 Signal peptidase (SPase) II DR996_05835 PF00133 tRNA synthetases class I (I, L, M and V) DR996_05835 PF06827 Zinc finger found in FPG and IleRS DR996_05835 PF08264 Anticodon-binding domain of tRNA DR996_05840 PF06574 FAD synthetase DR996_05840 PF01687 Riboflavin kinase DR996_05845 PF03023 Lipid II flippase MurJ DR996_05850 PF01649 Ribosomal protein S20 DR996_05855 PF01022 Bacterial regulatory protein, arsR family DR996_05860 PF03466 LysR substrate binding domain DR996_05860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_05865 PF02690 Na+/Pi-cotransporter DR996_05870 PF00303 Thymidylate synthase DR996_05875 PF01790 Prolipoprotein diacylglyceryl transferase DR996_05880 PF01925 Sulfite exporter TauE/SafE DR996_05885 PF02896 PEP-utilising enzyme, TIM barrel domain DR996_05885 PF00391 PEP-utilising enzyme, mobile domain DR996_05885 PF05524 PEP-utilising enzyme, N-terminal DR996_05885 PF01590 GAF domain DR996_05890 PF00293 NUDIX domain DR996_05895 PF02976 DNA mismatch repair enzyme MutH DR996_05905 PF00248 Aldo/keto reductase family DR996_05915 PF00158 Sigma-54 interaction domain DR996_05915 PF00072 Response regulator receiver domain DR996_05915 PF02954 Bacterial regulatory protein, Fis family DR996_05920 PF00152 tRNA synthetases class II (D, K and N) DR996_05920 PF01336 OB-fold nucleic acid binding domain DR996_05930 PF01368 DHH family DR996_05930 PF17768 RecJ OB domain DR996_05930 PF02272 DHHA1 domain DR996_05935 PF10411 Disulfide bond isomerase protein N-terminus DR996_05935 PF13098 Thioredoxin-like domain DR996_05940 PF00589 Phage integrase family DR996_05940 PF02899 Phage integrase, N-terminal SAM-like domain DR996_05945 PF00258 Flavodoxin DR996_05950 PF05525 Branched-chain amino acid transport protein DR996_05955 PF05175 Methyltransferase small domain DR996_05960 PF00271 Helicase conserved C-terminal domain DR996_05960 PF00270 DEAD/DEAH box helicase DR996_05970 PF03883 Peroxide stress protein YaaA DR996_05975 PF01235 Sodium:alanine symporter family DR996_05990 PF03167 Uracil DNA glycosylase superfamily DR996_06000 PF01261 Xylose isomerase-like TIM barrel DR996_06005 PF01228 Glycine radical DR996_06010 PF03358 NADPH-dependent FMN reductase DR996_06015 PF14821 Threonine synthase N terminus DR996_06015 PF00291 Pyridoxal-phosphate dependent enzyme DR996_06020 PF08544 GHMP kinases C terminal DR996_06020 PF00288 GHMP kinases N terminal domain DR996_06025 PF00742 Homoserine dehydrogenase DR996_06025 PF00696 Amino acid kinase family DR996_06025 PF01842 ACT domain DR996_06025 PF13840 ACT domain DR996_06025 PF03447 Homoserine dehydrogenase, NAD binding domain DR996_06035 PF03737 Aldolase/RraA DR996_06050 PF00486 Transcriptional regulatory protein, C terminal DR996_06050 PF00072 Response regulator receiver domain DR996_06060 PF01627 Hpt domain DR996_06060 PF18415 Histidine kinase receptor ArcB trans-membrane domain DR996_06060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_06060 PF00989 PAS fold DR996_06060 PF00072 Response regulator receiver domain DR996_06060 PF00512 His Kinase A (phospho-acceptor) domain DR996_06065 PF00563 EAL domain DR996_06065 PF01590 GAF domain DR996_06065 PF00990 Diguanylate cyclase, GGDEF domain DR996_06065 PF00360 Phytochrome region DR996_06070 PF04055 Radical SAM superfamily DR996_06070 PF16199 Radical_SAM C-terminal domain DR996_06075 PF00310 Glutamine amidotransferases class-II DR996_06075 PF01645 Conserved region in glutamate synthase DR996_06075 PF04898 Glutamate synthase central domain DR996_06075 PF01493 GXGXG motif DR996_06080 PF07992 Pyridine nucleotide-disulphide oxidoreductase DR996_06080 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DR996_06085 PF04898 Glutamate synthase central domain DR996_06085 PF01493 GXGXG motif DR996_06085 PF01645 Conserved region in glutamate synthase DR996_06085 PF00310 Glutamine amidotransferases class-II DR996_06090 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DR996_06090 PF07992 Pyridine nucleotide-disulphide oxidoreductase DR996_06100 PF01048 Phosphorylase superfamily DR996_06110 PF01497 Periplasmic binding protein DR996_06115 PF03458 UPF0126 domain DR996_06120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_06120 PF03466 LysR substrate binding domain DR996_06125 PF01925 Sulfite exporter TauE/SafE DR996_06145 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DR996_06145 PF02142 MGS-like domain DR996_06145 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DR996_06150 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DR996_06150 PF00117 Glutamine amidotransferase class-I DR996_06155 PF01113 Dihydrodipicolinate reductase, N-terminus DR996_06155 PF05173 Dihydrodipicolinate reductase, C-terminus DR996_06160 PF00293 NUDIX domain DR996_06165 PF07517 SecA DEAD-like domain DR996_06165 PF07516 SecA Wing and Scaffold domain DR996_06165 PF02810 SEC-C motif DR996_06165 PF01043 SecA preprotein cross-linking domain DR996_06175 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase DR996_06180 PF12327 FtsZ family, C-terminal domain DR996_06180 PF00091 Tubulin/FtsZ family, GTPase domain DR996_06185 PF02491 SHS2 domain inserted in FTSA DR996_06190 PF08478 POTRA domain, FtsQ-type DR996_06190 PF03799 Cell division protein FtsQ DR996_06195 PF08245 Mur ligase middle domain DR996_06195 PF01225 Mur ligase family, catalytic domain DR996_06195 PF02875 Mur ligase family, glutamate ligase domain DR996_06200 PF04101 Glycosyltransferase family 28 C-terminal domain DR996_06200 PF03033 Glycosyltransferase family 28 N-terminal domain DR996_06205 PF01098 Cell cycle protein DR996_06210 PF02875 Mur ligase family, glutamate ligase domain DR996_06210 PF08245 Mur ligase middle domain DR996_06215 PF00953 Glycosyl transferase family 4 DR996_06215 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 DR996_06220 PF01225 Mur ligase family, catalytic domain DR996_06220 PF08245 Mur ligase middle domain DR996_06220 PF02875 Mur ligase family, glutamate ligase domain DR996_06225 PF01225 Mur ligase family, catalytic domain DR996_06225 PF08245 Mur ligase middle domain DR996_06225 PF02875 Mur ligase family, glutamate ligase domain DR996_06230 PF03717 Penicillin-binding Protein dimerisation domain DR996_06230 PF00905 Penicillin binding protein transpeptidase domain DR996_06235 PF04999 Cell division protein FtsL DR996_06240 PF01795 MraW methylase family DR996_06255 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DR996_06260 PF04348 LppC putative lipoprotein DR996_06265 PF02021 Uncharacterised protein family UPF0102 DR996_06270 PF13580 SIS domain DR996_06275 PF04972 BON domain DR996_06280 PF04386 Stringent starvation protein B DR996_06285 PF02798 Glutathione S-transferase, N-terminal domain DR996_06285 PF00043 Glutathione S-transferase, C-terminal domain DR996_06290 PF02167 Cytochrome C1 family DR996_06295 PF00033 Cytochrome b/b6/petB DR996_06295 PF00032 Cytochrome b(C-terminal)/b6/petD DR996_06300 PF00355 Rieske [2Fe-2S] domain DR996_06300 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal DR996_06305 PF00380 Ribosomal protein S9/S16 DR996_06310 PF00572 Ribosomal protein L13 DR996_06320 PF03969 AFG1-like ATPase DR996_06330 PF06295 Protein of unknown function (DUF1043) DR996_06335 PF00595 PDZ domain DR996_06340 PF13180 PDZ domain DR996_06345 PF03989 DNA gyrase C-terminal domain, beta-propeller DR996_06345 PF00521 DNA gyrase/topoisomerase IV, subunit A DR996_06350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_06350 PF01751 Toprim domain DR996_06350 PF00986 DNA gyrase B subunit, carboxyl terminus DR996_06350 PF00204 DNA gyrase B DR996_06355 PF05728 Uncharacterised protein family (UPF0227) DR996_06360 PF00149 Calcineurin-like phosphoesterase DR996_06365 PF06853 Protein of unknown function (DUF1249) DR996_06370 PF00293 NUDIX domain DR996_06375 PF02321 Outer membrane efflux protein DR996_06380 PF01467 Cytidylyltransferase-like DR996_06380 PF00294 pfkB family carbohydrate kinase DR996_06385 PF08335 GlnD PII-uridylyltransferase DR996_06385 PF03710 Glutamate-ammonia ligase adenylyltransferase DR996_06390 PF02743 Cache domain DR996_06390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DR996_06390 PF00672 HAMP domain DR996_06395 PF07885 Ion channel DR996_06400 PF01928 CYTH domain DR996_06405 PF01865 Protein of unknown function DUF47 DR996_06410 PF01384 Phosphate transporter family DR996_06415 PF08239 Bacterial SH3 domain DR996_06435 PF01471 Putative peptidoglycan binding domain DR996_06435 PF13401 AAA domain DR996_06440 PF01966 HD domain DR996_06440 PF01743 Poly A polymerase head domain DR996_06440 PF12627 Probable RNA and SrmB- binding site of polymerase A DR996_06445 PF02673 Bacitracin resistance protein BacA DR996_06450 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DR996_06455 PF02152 Dihydroneopterin aldolase DR996_06460 PF02660 Glycerol-3-phosphate acyltransferase DR996_06465 PF00561 alpha/beta hydrolase fold DR996_06470 PF00814 Glycoprotease family DR996_06475 PF01165 Ribosomal protein S21 DR996_06480 PF09424 Yqey-like protein DR996_06485 PF01807 CHC2 zinc finger DR996_06485 PF10410 DnaB-helicase binding domain of primase DR996_06485 PF08275 DNA primase catalytic core, N-terminal domain DR996_06485 PF08278 DNA primase DnaG DnaB-binding DR996_06490 PF04546 Sigma-70, non-essential region DR996_06490 PF03979 Sigma-70 factor, region 1.1 DR996_06490 PF00140 Sigma-70 factor, region 1.2 DR996_06490 PF04542 Sigma-70 region 2 DR996_06490 PF04539 Sigma-70 region 3 DR996_06490 PF04545 Sigma-70, region 4 DR996_06520 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DR996_06520 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DR996_06520 PF02378 Phosphotransferase system, EIIC DR996_06525 PF01232 Mannitol dehydrogenase Rossmann domain DR996_06525 PF08125 Mannitol dehydrogenase C-terminal domain DR996_06530 PF05068 Mannitol repressor DR996_06535 PF13419 Haloacid dehalogenase-like hydrolase DR996_06540 PF00512 His Kinase A (phospho-acceptor) domain DR996_06540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_06540 PF00672 HAMP domain DR996_06545 PF00486 Transcriptional regulatory protein, C terminal DR996_06545 PF00072 Response regulator receiver domain DR996_06560 PF01380 SIS domain DR996_06565 PF00455 DeoR C terminal sensor domain DR996_06565 PF08220 DeoR-like helix-turn-helix domain DR996_06575 PF02887 Pyruvate kinase, alpha/beta domain DR996_06575 PF00224 Pyruvate kinase, barrel domain DR996_06585 PF17158 Membrane-associated sensor, integral membrane domain DR996_06585 PF00990 Diguanylate cyclase, GGDEF domain DR996_06590 PF10369 Small subunit of acetolactate synthase DR996_06595 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DR996_06595 PF00205 Thiamine pyrophosphate enzyme, central domain DR996_06595 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DR996_06600 PF00501 AMP-binding enzyme DR996_06605 PF03466 LysR substrate binding domain DR996_06605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_06615 PF01569 PAP2 superfamily DR996_06635 PF08502 LeuA allosteric (dimerisation) domain DR996_06635 PF00682 HMGL-like DR996_06640 PF00180 Isocitrate/isopropylmalate dehydrogenase DR996_06645 PF00330 Aconitase family (aconitate hydratase) DR996_06650 PF00694 Aconitase C-terminal domain DR996_06660 PF05099 Tellurite resistance protein TerB DR996_06660 PF00226 DnaJ domain DR996_06665 PF03968 OstA-like protein DR996_06665 PF04453 LPS transport system D DR996_06670 PF09312 SurA N-terminal domain DR996_06675 PF04166 Pyridoxal phosphate biosynthetic protein PdxA DR996_06680 PF00398 Ribosomal RNA adenine dimethylase DR996_06685 PF04379 ApaG domain DR996_06690 PF00149 Calcineurin-like phosphoesterase DR996_06695 PF00186 Dihydrofolate reductase DR996_06705 PF12821 Threonine/Serine exporter, ThrE DR996_06710 PF06738 Putative threonine/serine exporter DR996_06715 PF01018 GTP1/OBG DR996_06715 PF01926 50S ribosome-binding GTPase DR996_06720 PF01016 Ribosomal L27 protein DR996_06725 PF00829 Ribosomal prokaryotic L21 protein DR996_06730 PF00348 Polyprenyl synthetase DR996_06740 PF00056 lactate/malate dehydrogenase, NAD binding domain DR996_06740 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DR996_06745 PF01316 Arginine repressor, DNA binding domain DR996_06745 PF02863 Arginine repressor, C-terminal domain DR996_06755 PF16868 NMT1-like family DR996_06770 PF00005 ABC transporter DR996_06775 PF00528 Binding-protein-dependent transport system inner membrane component DR996_06785 PF02441 Flavoprotein DR996_06790 PF08245 Mur ligase middle domain DR996_06790 PF02875 Mur ligase family, glutamate ligase domain DR996_06790 PF01225 Mur ligase family, catalytic domain DR996_06795 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain DR996_06800 PF00719 Inorganic pyrophosphatase DR996_06815 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like DR996_06820 PF04357 TamB, inner membrane protein subunit of TAM complex DR996_06825 PF01103 Surface antigen DR996_06825 PF07244 Surface antigen variable number repeat DR996_06825 PF17243 POTRA domain TamA domain 1 DR996_06830 PF01625 Peptide methionine sulfoxide reductase DR996_06840 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) DR996_06845 PF10795 Protein of unknown function (DUF2607) DR996_06855 PF00005 ABC transporter DR996_06880 PF03600 Citrate transporter DR996_06880 PF02080 TrkA-C domain DR996_06885 PF00009 Elongation factor Tu GTP binding domain DR996_06890 PF01507 Phosphoadenosine phosphosulfate reductase family DR996_06895 PF10414 Sirohaem synthase dimerisation region DR996_06895 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DR996_06895 PF14824 Sirohaem biosynthesis protein central DR996_06900 PF00149 Calcineurin-like phosphoesterase DR996_06900 PF02872 5'-nucleotidase, C-terminal domain DR996_06915 PF00271 Helicase conserved C-terminal domain DR996_06915 PF00270 DEAD/DEAH box helicase DR996_06915 PF03880 DbpA RNA binding domain DR996_06920 PF13673 Acetyltransferase (GNAT) domain DR996_06935 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DR996_06935 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DR996_06945 PF01196 Ribosomal protein L17 DR996_06950 PF01000 RNA polymerase Rpb3/RpoA insert domain DR996_06950 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DR996_06950 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DR996_06955 PF01479 S4 domain DR996_06955 PF00163 Ribosomal protein S4/S9 N-terminal domain DR996_06960 PF00411 Ribosomal protein S11 DR996_06965 PF00416 Ribosomal protein S13/S18 DR996_06970 PF00444 Ribosomal protein L36 DR996_06975 PF00344 SecY translocase DR996_06980 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DR996_06985 PF00327 Ribosomal protein L30p/L7e DR996_06990 PF03719 Ribosomal protein S5, C-terminal domain DR996_06990 PF00333 Ribosomal protein S5, N-terminal domain DR996_06995 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DR996_07000 PF00347 Ribosomal protein L6 DR996_07005 PF00410 Ribosomal protein S8 DR996_07010 PF00253 Ribosomal protein S14p/S29e DR996_07015 PF00673 ribosomal L5P family C-terminus DR996_07015 PF00281 Ribosomal protein L5 DR996_07020 PF00467 KOW motif DR996_07020 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DR996_07025 PF00238 Ribosomal protein L14p/L23e DR996_07030 PF00366 Ribosomal protein S17 DR996_07035 PF00831 Ribosomal L29 protein DR996_07040 PF00252 Ribosomal protein L16p/L10e DR996_07045 PF00189 Ribosomal protein S3, C-terminal domain DR996_07045 PF07650 KH domain DR996_07050 PF00237 Ribosomal protein L22p/L17e DR996_07055 PF00203 Ribosomal protein S19 DR996_07060 PF03947 Ribosomal Proteins L2, C-terminal domain DR996_07060 PF00181 Ribosomal Proteins L2, RNA binding domain DR996_07065 PF00276 Ribosomal protein L23 DR996_07070 PF00573 Ribosomal protein L4/L1 family DR996_07075 PF00297 Ribosomal protein L3 DR996_07080 PF00338 Ribosomal protein S10p/S20e DR996_07085 PF01197 Ribosomal protein L31 DR996_07095 PF00270 DEAD/DEAH box helicase DR996_07095 PF00271 Helicase conserved C-terminal domain DR996_07095 PF18319 PriA DNA helicase Cys-rich region (CRR) domain DR996_07095 PF18074 Primosomal protein N C-terminal domain DR996_07095 PF17764 3′ DNA-binding domain (3′BD) DR996_07100 PF00356 Bacterial regulatory proteins, lacI family DR996_07110 PF00227 Proteasome subunit DR996_07115 PF07724 AAA domain (Cdc48 subfamily) DR996_07115 PF00004 ATPase family associated with various cellular activities (AAA) DR996_07120 PF01040 UbiA prenyltransferase family DR996_07125 PF03737 Aldolase/RraA DR996_07135 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded DR996_07140 PF08220 DeoR-like helix-turn-helix domain DR996_07140 PF00455 DeoR C terminal sensor domain DR996_07160 PF00121 Triosephosphate isomerase DR996_07165 PF00483 Nucleotidyl transferase DR996_07175 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DR996_07175 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DR996_07175 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DR996_07185 PF01238 Phosphomannose isomerase type I DR996_07190 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DR996_07190 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DR996_07190 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DR996_07190 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DR996_07195 PF00535 Glycosyl transferase family 2 DR996_07200 PF01050 Mannose-6-phosphate isomerase DR996_07200 PF00483 Nucleotidyl transferase DR996_07205 PF00293 NUDIX domain DR996_07210 PF01370 NAD dependent epimerase/dehydratase family DR996_07215 PF16363 GDP-mannose 4,6 dehydratase DR996_07235 PF00535 Glycosyl transferase family 2 DR996_07240 PF01501 Glycosyl transferase family 8 DR996_07240 PF00535 Glycosyl transferase family 2 DR996_07255 PF00953 Glycosyl transferase family 4 DR996_07265 PF02397 Bacterial sugar transferase DR996_07270 PF00535 Glycosyl transferase family 2 DR996_07275 PF01757 Acyltransferase family DR996_07290 PF00535 Glycosyl transferase family 2 DR996_07305 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DR996_07315 PF05523 WxcM-like, C-terminal DR996_07320 PF00483 Nucleotidyl transferase DR996_07325 PF16363 GDP-mannose 4,6 dehydratase DR996_07335 PF10531 SLBB domain DR996_07335 PF18412 Outer-membrane lipoprotein Wza C-terminal domain DR996_07335 PF02563 Polysaccharide biosynthesis/export protein DR996_07360 PF06082 Exopolysaccharide biosynthesis protein YbjH DR996_07365 PF01370 NAD dependent epimerase/dehydratase family DR996_07370 PF03279 Bacterial lipid A biosynthesis acyltransferase DR996_07375 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DR996_07380 PF13439 Glycosyltransferase Family 4 DR996_07380 PF00534 Glycosyl transferases group 1 DR996_07385 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) DR996_07390 PF01501 Glycosyl transferase family 8 DR996_07390 PF00535 Glycosyl transferase family 2 DR996_07395 PF08942 Domain of unknown function (DUF1919) DR996_07400 PF00175 Oxidoreductase NAD-binding domain DR996_07400 PF00111 2Fe-2S iron-sulfur cluster binding domain DR996_07400 PF00970 Oxidoreductase FAD-binding domain DR996_07405 PF00483 Nucleotidyl transferase DR996_07410 PF16363 GDP-mannose 4,6 dehydratase DR996_07415 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DR996_07420 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase DR996_07440 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DR996_07445 PF00535 Glycosyl transferase family 2 DR996_07455 PF01467 Cytidylyltransferase-like DR996_07460 PF05686 Glycosyl transferase family 90 DR996_07465 PF01219 Prokaryotic diacylglycerol kinase DR996_07470 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DR996_07470 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DR996_07470 PF06827 Zinc finger found in FPG and IleRS DR996_07480 PF00471 Ribosomal protein L33 DR996_07485 PF00830 Ribosomal L28 family DR996_07490 PF04002 RadC-like JAB domain DR996_07495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DR996_07495 PF02743 Cache domain DR996_07495 PF00672 HAMP domain DR996_07505 PF02441 Flavoprotein DR996_07505 PF04127 DNA / pantothenate metabolism flavoprotein DR996_07510 PF00440 Bacterial regulatory proteins, tetR family DR996_07515 PF03279 Bacterial lipid A biosynthesis acyltransferase DR996_07525 PF03725 3' exoribonuclease family, domain 2 DR996_07525 PF01138 3' exoribonuclease family, domain 1 DR996_07530 PF08340 Domain of unknown function (DUF1732) DR996_07530 PF03755 YicC-like family, N-terminal region DR996_07535 PF18500 CadC C-terminal domain 1 DR996_07535 PF00486 Transcriptional regulatory protein, C terminal DR996_07545 PF00892 EamA-like transporter family DR996_07560 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DR996_07560 PF00005 ABC transporter DR996_07565 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DR996_07565 PF00005 ABC transporter DR996_07570 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DR996_07575 PF12911 N-terminal TM domain of oligopeptide transport permease C DR996_07575 PF00528 Binding-protein-dependent transport system inner membrane component DR996_07580 PF00528 Binding-protein-dependent transport system inner membrane component DR996_07590 PF07715 TonB-dependent Receptor Plug Domain DR996_07590 PF00593 TonB dependent receptor DR996_07605 PF01618 MotA/TolQ/ExbB proton channel family DR996_07610 PF02472 Biopolymer transport protein ExbD/TolR DR996_07625 PF00625 Guanylate kinase DR996_07630 PF01192 RNA polymerase Rpb6 DR996_07635 PF13291 ACT domain DR996_07635 PF04607 Region found in RelA / SpoT proteins DR996_07635 PF02824 TGS domain DR996_07640 PF00588 SpoU rRNA Methylase family DR996_07640 PF12105 SpoU, rRNA methylase, C-terminal DR996_07645 PF17191 RecG wedge domain DR996_07645 PF00270 DEAD/DEAH box helicase DR996_07645 PF00271 Helicase conserved C-terminal domain DR996_07650 PF07676 WD40-like Beta Propeller Repeat DR996_07650 PF00326 Prolyl oligopeptidase family DR996_07655 PF00860 Permease family DR996_07660 PF00672 HAMP domain DR996_07660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_07660 PF00512 His Kinase A (phospho-acceptor) domain DR996_07665 PF00486 Transcriptional regulatory protein, C terminal DR996_07665 PF00072 Response regulator receiver domain DR996_07670 PF01272 Transcription elongation factor, GreA/GreB, C-term DR996_07670 PF03449 Transcription elongation factor, N-terminal DR996_07680 PF09371 Tex-like protein N-terminal domain DR996_07680 PF00575 S1 RNA binding domain DR996_07680 PF17674 HHH domain DR996_07680 PF16921 Tex protein YqgF-like domain DR996_07690 PF00561 alpha/beta hydrolase fold DR996_07695 PF00156 Phosphoribosyl transferase domain DR996_07700 PF01521 Iron-sulphur cluster biosynthesis DR996_07700 PF01106 NifU-like domain DR996_07705 PF00293 NUDIX domain DR996_07710 PF00459 Inositol monophosphatase family DR996_07715 PF01203 Type II secretion system (T2SS), protein N DR996_07720 PF04612 Type II secretion system (T2SS), protein M DR996_07725 PF12693 GspL periplasmic domain DR996_07725 PF05134 Type II secretion system (T2SS), protein L DR996_07730 PF03934 Type II secretion system (T2SS), protein K DR996_07735 PF07963 Prokaryotic N-terminal methylation motif DR996_07735 PF11612 Type II secretion system (T2SS), protein J DR996_07740 PF02501 Type II secretion system (T2SS), protein I DR996_07740 PF07963 Prokaryotic N-terminal methylation motif DR996_07745 PF12019 Type II transport protein GspH DR996_07750 PF07963 Prokaryotic N-terminal methylation motif DR996_07750 PF08334 Type II secretion system (T2SS), protein G DR996_07755 PF00482 Type II secretion system (T2SS), protein F DR996_07760 PF00437 Type II/IV secretion system protein DR996_07765 PF00263 Bacterial type II and III secretion system protein DR996_07765 PF03958 Bacterial type II/III secretion system short domain DR996_07770 PF11356 Type II secretion system protein C DR996_07775 PF01479 S4 domain DR996_07780 PF01430 Hsp33 protein DR996_07785 PF01293 Phosphoenolpyruvate carboxykinase DR996_07795 PF09500 Putative thioesterase (yiiD_Cterm) DR996_07795 PF00583 Acetyltransferase (GNAT) family DR996_07800 PF02580 D-Tyr-tRNA(Tyr) deacylase DR996_07805 PF03631 Virulence factor BrkB DR996_07830 PF00120 Glutamine synthetase, catalytic domain DR996_07830 PF03951 Glutamine synthetase, beta-Grasp domain DR996_07840 PF00989 PAS fold DR996_07840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_07840 PF00512 His Kinase A (phospho-acceptor) domain DR996_07845 PF00158 Sigma-54 interaction domain DR996_07845 PF02954 Bacterial regulatory protein, Fis family DR996_07845 PF00072 Response regulator receiver domain DR996_07850 PF00563 EAL domain DR996_07850 PF03707 Bacterial signalling protein N terminal repeat DR996_07850 PF00990 Diguanylate cyclase, GGDEF domain DR996_07855 PF00962 Adenosine/AMP deaminase DR996_07860 PF04055 Radical SAM superfamily DR996_07860 PF06969 HemN C-terminal domain DR996_07865 PF10675 Protein of unknown function (DUF2489) DR996_07870 PF04220 Der GTPase activator (YihI) DR996_07885 PF13442 Cytochrome C oxidase, cbb3-type, subunit III DR996_07890 PF01926 50S ribosome-binding GTPase DR996_07900 PF01612 3'-5' exonuclease DR996_07900 PF00476 DNA polymerase family A DR996_07900 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DR996_07900 PF01367 5'-3' exonuclease, C-terminal SAM fold DR996_07915 PF00490 Delta-aminolevulinic acid dehydratase DR996_07920 PF01026 TatD related DNase DR996_07925 PF00902 Sec-independent protein translocase protein (TatC) DR996_07930 PF02416 mttA/Hcf106 family DR996_07935 PF02416 mttA/Hcf106 family DR996_07940 PF03109 ABC1 family DR996_07945 PF02036 SCP-2 sterol transfer family DR996_07950 PF01209 ubiE/COQ5 methyltransferase family DR996_07955 PF02646 RmuC family DR996_07965 PF00990 Diguanylate cyclase, GGDEF domain DR996_07965 PF03707 Bacterial signalling protein N terminal repeat DR996_07965 PF00563 EAL domain DR996_07990 PF02384 N-6 DNA Methylase DR996_07995 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) DR996_07995 PF12008 Type I restriction and modification enzyme - subunit R C terminal DR996_07995 PF18766 SWI2/SNF2 ATPase DR996_08035 PF15935 RNase LS, bacterial toxin DR996_08060 PF00665 Integrase core domain DR996_08065 PF01695 IstB-like ATP binding protein DR996_08110 PF10625 Universal stress protein B (UspB) DR996_08115 PF00210 Ferritin-like domain DR996_08120 PF00582 Universal stress protein family DR996_08125 PF00892 EamA-like transporter family DR996_08135 PF04445 Putative SAM-dependent methyltransferase DR996_08140 PF08448 PAS fold DR996_08140 PF00990 Diguanylate cyclase, GGDEF domain DR996_08140 PF00563 EAL domain DR996_08145 PF01037 Lrp/AsnC ligand binding domain DR996_08150 PF01432 Peptidase family M3 DR996_08160 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ DR996_08170 PF07992 Pyridine nucleotide-disulphide oxidoreductase DR996_08170 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DR996_08200 PF02954 Bacterial regulatory protein, Fis family DR996_08215 PF04717 Type VI secretion system, phage-baseplate injector DR996_08250 PF01081 KDPG and KHG aldolase DR996_08255 PF02447 GntP family permease DR996_08260 PF01202 Shikimate kinase DR996_08265 PF00920 Dehydratase family DR996_08270 PF00893 Small Multidrug Resistance protein DR996_08275 PF00893 Small Multidrug Resistance protein DR996_08280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_08280 PF03466 LysR substrate binding domain DR996_08285 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DR996_08285 PF00356 Bacterial regulatory proteins, lacI family DR996_08290 PF00069 Protein kinase domain DR996_08320 PF00528 Binding-protein-dependent transport system inner membrane component DR996_08320 PF12911 N-terminal TM domain of oligopeptide transport permease C DR996_08330 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DR996_08335 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DR996_08335 PF00005 ABC transporter DR996_08345 PF13419 Haloacid dehalogenase-like hydrolase DR996_08370 PF13538 UvrD-like helicase C-terminal domain DR996_08370 PF14490 Helix-hairpin-helix containing domain DR996_08370 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain DR996_08375 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DR996_08385 PF01979 Amidohydrolase family DR996_08420 PF07690 Major Facilitator Superfamily DR996_08425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_08425 PF03466 LysR substrate binding domain DR996_08440 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase DR996_08530 PF02899 Phage integrase, N-terminal SAM-like domain DR996_08530 PF00589 Phage integrase family DR996_08535 PF02384 N-6 DNA Methylase DR996_08540 PF01420 Type I restriction modification DNA specificity domain DR996_08555 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) DR996_08555 PF11867 Domain of unknown function (DUF3387) DR996_08555 PF18766 SWI2/SNF2 ATPase DR996_08585 PF13442 Cytochrome C oxidase, cbb3-type, subunit III DR996_08590 PF00580 UvrD/REP helicase N-terminal domain DR996_08590 PF13361 UvrD-like helicase C-terminal domain DR996_08595 PF00440 Bacterial regulatory proteins, tetR family DR996_08595 PF08359 YsiA-like protein, C-terminal region DR996_08600 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DR996_08605 PF00873 AcrB/AcrD/AcrF family DR996_08615 PF04380 Membrane fusogenic activity DR996_08625 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain DR996_08625 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DR996_08630 PF03466 LysR substrate binding domain DR996_08630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_08675 PF00132 Bacterial transferase hexapeptide (six repeats) DR996_08680 PF07369 Protein of unknown function (DUF1488) DR996_08685 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DR996_08685 PF01488 Shikimate / quinate 5-dehydrogenase DR996_08685 PF08501 Shikimate dehydrogenase substrate binding domain DR996_08690 PF01218 Coproporphyrinogen III oxidase DR996_08695 PF01300 Telomere recombination DR996_08700 PF00731 AIR carboxylase DR996_08705 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain DR996_08705 PF02222 ATP-grasp domain DR996_08710 PF01396 Topoisomerase DNA binding C4 zinc finger DR996_08715 PF04361 Protein of unknown function (DUF494) DR996_08720 PF17782 DprA winged helix domain DR996_08720 PF02481 DNA recombination-mediator protein A DR996_08730 PF01327 Polypeptide deformylase DR996_08735 PF02911 Formyl transferase, C-terminal domain DR996_08735 PF00551 Formyl transferase DR996_08740 PF01029 NusB family DR996_08740 PF01189 16S rRNA methyltransferase RsmB/F DR996_08745 PF02080 TrkA-C domain DR996_08745 PF02254 TrkA-N domain DR996_08750 PF02386 Cation transport protein DR996_08760 PF03006 Haemolysin-III related DR996_08765 PF07070 SpoOM protein DR996_08775 PF06288 Protein of unknown function (DUF1040) DR996_08780 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase DR996_08780 PF12801 4Fe-4S binding domain DR996_08780 PF13746 4Fe-4S dicluster domain DR996_08785 PF01636 Phosphotransferase enzyme family DR996_08790 PF01323 DSBA-like thioredoxin domain DR996_08795 PF01553 Acyltransferase DR996_08815 PF01320 Colicin immunity protein / pyocin immunity protein DR996_08860 PF00589 Phage integrase family DR996_08860 PF02899 Phage integrase, N-terminal SAM-like domain DR996_08865 PF01078 Magnesium chelatase, subunit ChlI DR996_08865 PF13335 Magnesium chelatase, subunit ChlI C-terminal DR996_08870 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DR996_08870 PF00205 Thiamine pyrophosphate enzyme, central domain DR996_08870 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DR996_08880 PF01063 Amino-transferase class IV DR996_08885 PF00920 Dehydratase family DR996_08890 PF00291 Pyridoxal-phosphate dependent enzyme DR996_08890 PF00585 C-terminal regulatory domain of Threonine dehydratase DR996_08895 PF00990 Diguanylate cyclase, GGDEF domain DR996_08900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_08900 PF03466 LysR substrate binding domain DR996_08905 PF07690 Major Facilitator Superfamily DR996_08910 PF00497 Bacterial extracellular solute-binding proteins, family 3 DR996_08915 PF00528 Binding-protein-dependent transport system inner membrane component DR996_08920 PF00132 Bacterial transferase hexapeptide (six repeats) DR996_08920 PF12804 MobA-like NTP transferase domain DR996_08925 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain DR996_08925 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DR996_08930 PF02874 ATP synthase alpha/beta family, beta-barrel domain DR996_08930 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DR996_08935 PF00231 ATP synthase DR996_08940 PF00306 ATP synthase alpha/beta chain, C terminal domain DR996_08940 PF02874 ATP synthase alpha/beta family, beta-barrel domain DR996_08940 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DR996_08945 PF00213 ATP synthase delta (OSCP) subunit DR996_08950 PF00430 ATP synthase B/B' CF(0) DR996_08955 PF00137 ATP synthase subunit C DR996_08960 PF00119 ATP synthase A chain DR996_08965 PF03899 ATP synthase I chain DR996_08970 PF17762 HTH domain found in ParB protein DR996_08970 PF02195 ParB-like nuclease domain DR996_08975 PF13614 AAA domain DR996_08980 PF02527 rRNA small subunit methyltransferase G DR996_08985 PF01134 Glucose inhibited division protein A DR996_08985 PF13932 GidA associated domain DR996_08990 PF00258 Flavodoxin DR996_08995 PF12631 MnmE helical domain DR996_08995 PF10396 GTP-binding protein TrmE N-terminus DR996_08995 PF01926 50S ribosome-binding GTPase DR996_09000 PF14849 YidC periplasmic domain DR996_09000 PF02096 60Kd inner membrane protein DR996_09005 PF01809 Putative membrane protein insertion efficiency factor DR996_09010 PF00825 Ribonuclease P DR996_09015 PF00468 Ribosomal protein L34 DR996_09020 PF00005 ABC transporter DR996_09025 PF00528 Binding-protein-dependent transport system inner membrane component DR996_09030 PF00497 Bacterial extracellular solute-binding proteins, family 3 DR996_09040 PF00308 Bacterial dnaA protein DR996_09040 PF08299 Bacterial dnaA protein helix-turn-helix DR996_09040 PF11638 DnaA N-terminal domain DR996_09045 PF00712 DNA polymerase III beta subunit, N-terminal domain DR996_09045 PF02767 DNA polymerase III beta subunit, central domain DR996_09045 PF02768 DNA polymerase III beta subunit, C-terminal domain DR996_09050 PF02463 RecF/RecN/SMC N terminal domain DR996_09055 PF01751 Toprim domain DR996_09055 PF00204 DNA gyrase B DR996_09055 PF00986 DNA gyrase B subunit, carboxyl terminus DR996_09055 PF18053 DNA gyrase B subunit insert domain DR996_09055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_09060 PF00011 Hsp20/alpha crystallin family DR996_09065 PF00155 Aminotransferase class I and II DR996_09070 PF00128 Alpha amylase, catalytic domain DR996_09075 PF02092 Glycyl-tRNA synthetase beta subunit DR996_09075 PF05746 DALR anticodon binding domain DR996_09080 PF02091 Glycyl-tRNA synthetase alpha subunit DR996_09085 PF01169 Uncharacterized protein family UPF0016 DR996_09095 PF01206 Sulfurtransferase TusA DR996_09105 PF03466 LysR substrate binding domain DR996_09105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_09110 PF00107 Zinc-binding dehydrogenase DR996_09110 PF08240 Alcohol dehydrogenase GroES-like domain DR996_09115 PF02803 Thiolase, C-terminal domain DR996_09115 PF00108 Thiolase, N-terminal domain DR996_09120 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DR996_09120 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DR996_09120 PF00378 Enoyl-CoA hydratase/isomerase DR996_09125 PF09186 Domain of unknown function (DUF1949) DR996_09125 PF01205 Uncharacterized protein family UPF0029 DR996_09130 PF02386 Cation transport protein DR996_09135 PF12724 Flavodoxin domain DR996_09185 PF00394 Multicopper oxidase DR996_09185 PF07732 Multicopper oxidase DR996_09185 PF07731 Multicopper oxidase DR996_09190 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DR996_09195 PF13667 ThiC-associated domain DR996_09195 PF01964 Radical SAM ThiC family DR996_09200 PF02581 Thiamine monophosphate synthase DR996_09205 PF00899 ThiF family DR996_09210 PF02597 ThiS family DR996_09215 PF05690 Thiazole biosynthesis protein ThiG DR996_09220 PF06968 Biotin and Thiamin Synthesis associated domain DR996_09220 PF04055 Radical SAM superfamily DR996_09225 PF01321 Creatinase/Prolidase N-terminal domain DR996_09225 PF00557 Metallopeptidase family M24 DR996_09225 PF00557 Metallopeptidase family M24 DR996_09225 PF01321 Creatinase/Prolidase N-terminal domain DR996_09230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_09230 PF03466 LysR substrate binding domain DR996_09235 PF07690 Major Facilitator Superfamily DR996_09255 PF05114 Protein of unknown function (DUF692) DR996_09265 PF13361 UvrD-like helicase C-terminal domain DR996_09265 PF00580 UvrD/REP helicase N-terminal domain DR996_09280 PF01810 LysE type translocator DR996_09290 PF00892 EamA-like transporter family DR996_09295 PF00570 HRDC domain DR996_09295 PF00270 DEAD/DEAH box helicase DR996_09295 PF00271 Helicase conserved C-terminal domain DR996_09295 PF16124 RecQ zinc-binding DR996_09295 PF09382 RQC domain DR996_09305 PF02592 Putative vitamin uptake transporter DR996_09315 PF02541 Ppx/GppA phosphatase family DR996_09320 PF00271 Helicase conserved C-terminal domain DR996_09320 PF00270 DEAD/DEAH box helicase DR996_09325 PF00085 Thioredoxin DR996_09330 PF07497 Rho termination factor, RNA-binding domain DR996_09330 PF07498 Rho termination factor, N-terminal domain DR996_09330 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DR996_09340 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DR996_09345 PF00111 2Fe-2S iron-sulfur cluster binding domain DR996_09350 PF00175 Oxidoreductase NAD-binding domain DR996_09395 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase DR996_09400 PF02602 Uroporphyrinogen-III synthase HemD DR996_09405 PF03900 Porphobilinogen deaminase, C-terminal domain DR996_09405 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain DR996_09410 PF01295 Adenylate cyclase, class-I DR996_09410 PF12633 Adenylate cyclase NT domain DR996_09415 PF01491 Frataxin-like domain DR996_09425 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DR996_09425 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DR996_09430 PF01678 Diaminopimelate epimerase DR996_09440 PF00589 Phage integrase family DR996_09440 PF02899 Phage integrase, N-terminal SAM-like domain DR996_09445 PF13419 Haloacid dehalogenase-like hydrolase DR996_09450 PF00990 Diguanylate cyclase, GGDEF domain DR996_09450 PF10442 FIST C domain DR996_09450 PF00563 EAL domain DR996_09450 PF08495 FIST N domain DR996_09475 PF12146 Serine aminopeptidase, S33 DR996_09480 PF01810 LysE type translocator DR996_09505 PF10124 Mu-like prophage major head subunit gpT DR996_09540 PF00005 ABC transporter DR996_09580 PF01022 Bacterial regulatory protein, arsR family DR996_09585 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DR996_09585 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DR996_09610 PF10694 Protein of unknown function (DUF2500) DR996_09640 PF01914 MarC family integral membrane protein DR996_09660 PF00005 ABC transporter DR996_09665 PF18075 FtsX extracellular domain DR996_09670 PF04542 Sigma-70 region 2 DR996_09670 PF00140 Sigma-70 factor, region 1.2 DR996_09670 PF04545 Sigma-70, region 4 DR996_09675 PF00581 Rhodanese-like domain DR996_09680 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease DR996_09680 PF01694 Rhomboid family DR996_09685 PF03748 Flagellar basal body-associated protein FliL DR996_09690 PF04345 Chorismate lyase DR996_09695 PF01040 UbiA prenyltransferase family DR996_09700 PF01553 Acyltransferase DR996_09710 PF01726 LexA DNA binding domain DR996_09710 PF00717 Peptidase S24-like DR996_09720 PF01554 MatE DR996_09725 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DR996_09725 PF07992 Pyridine nucleotide-disulphide oxidoreductase DR996_09730 PF00440 Bacterial regulatory proteins, tetR family DR996_09740 PF05958 tRNA (Uracil-5-)-methyltransferase DR996_09745 PF07715 TonB-dependent Receptor Plug Domain DR996_09745 PF00593 TonB dependent receptor DR996_09755 PF01177 Asp/Glu/Hydantoin racemase DR996_09825 PF13091 PLD-like domain DR996_09835 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DR996_09835 PF01565 FAD binding domain DR996_09840 PF03099 Biotin/lipoate A/B protein ligase family DR996_09840 PF02237 Biotin protein ligase C terminal domain DR996_09840 PF08279 HTH domain DR996_09845 PF00485 Phosphoribulokinase / Uridine kinase family DR996_09865 PF00239 Resolvase, N terminal domain DR996_09865 PF02796 Helix-turn-helix domain of resolvase DR996_09885 PF14490 Helix-hairpin-helix containing domain DR996_09885 PF13538 UvrD-like helicase C-terminal domain DR996_09885 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain DR996_09905 PF00589 Phage integrase family DR996_09905 PF02899 Phage integrase, N-terminal SAM-like domain DR996_09915 PF03143 Elongation factor Tu C-terminal domain DR996_09915 PF03144 Elongation factor Tu domain 2 DR996_09915 PF00009 Elongation factor Tu GTP binding domain DR996_09925 PF00584 SecE/Sec61-gamma subunits of protein translocation complex DR996_09930 PF02357 Transcription termination factor nusG DR996_09930 PF00467 KOW motif DR996_09935 PF00298 Ribosomal protein L11, RNA binding domain DR996_09935 PF03946 Ribosomal protein L11, N-terminal domain DR996_09940 PF00687 Ribosomal protein L1p/L10e family DR996_09945 PF00466 Ribosomal protein L10 DR996_09950 PF16320 Ribosomal protein L7/L12 dimerisation domain DR996_09950 PF00542 Ribosomal protein L7/L12 C-terminal domain DR996_09955 PF00562 RNA polymerase Rpb2, domain 6 DR996_09955 PF04563 RNA polymerase beta subunit DR996_09955 PF04565 RNA polymerase Rpb2, domain 3 DR996_09955 PF04561 RNA polymerase Rpb2, domain 2 DR996_09955 PF04560 RNA polymerase Rpb2, domain 7 DR996_09955 PF10385 RNA polymerase beta subunit external 1 domain DR996_09960 PF00623 RNA polymerase Rpb1, domain 2 DR996_09960 PF04983 RNA polymerase Rpb1, domain 3 DR996_09960 PF05000 RNA polymerase Rpb1, domain 4 DR996_09960 PF04998 RNA polymerase Rpb1, domain 5 DR996_09960 PF04997 RNA polymerase Rpb1, domain 1 DR996_09965 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ DR996_09970 PF00293 NUDIX domain DR996_09970 PF09297 NADH pyrophosphatase zinc ribbon domain DR996_09975 PF01208 Uroporphyrinogen decarboxylase (URO-D) DR996_09980 PF03167 Uracil DNA glycosylase superfamily DR996_09985 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DR996_09990 PF04222 Protein of unknown function (DUF416) DR996_09995 PF00571 CBS domain DR996_09995 PF01595 Cyclin M transmembrane N-terminal domain DR996_10000 PF00216 Bacterial DNA-binding protein DR996_10010 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DR996_10010 PF02843 Phosphoribosylglycinamide synthetase, C domain DR996_10010 PF02844 Phosphoribosylglycinamide synthetase, N domain DR996_10015 PF01808 AICARFT/IMPCHase bienzyme DR996_10015 PF02142 MGS-like domain DR996_10025 PF13411 MerR HTH family regulatory protein DR996_10030 PF00486 Transcriptional regulatory protein, C terminal DR996_10030 PF18500 CadC C-terminal domain 1 DR996_10045 PF13520 Amino acid permease DR996_10050 PF01276 Orn/Lys/Arg decarboxylase, major domain DR996_10050 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DR996_10050 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain DR996_10095 PF03707 Bacterial signalling protein N terminal repeat DR996_10095 PF13188 PAS domain DR996_10095 PF00990 Diguanylate cyclase, GGDEF domain DR996_10095 PF00563 EAL domain DR996_10100 PF02954 Bacterial regulatory protein, Fis family DR996_10105 PF01207 Dihydrouridine synthase (Dus) DR996_10120 PF00289 Biotin carboxylase, N-terminal domain DR996_10120 PF02785 Biotin carboxylase C-terminal domain DR996_10120 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DR996_10125 PF00364 Biotin-requiring enzyme DR996_10130 PF01220 Dehydroquinase class II DR996_10135 PF13193 AMP-binding enzyme C-terminal domain DR996_10135 PF16177 Acetyl-coenzyme A synthetase N-terminus DR996_10135 PF00501 AMP-binding enzyme DR996_10150 PF12832 MFS_1 like family DR996_10155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_10155 PF00512 His Kinase A (phospho-acceptor) domain DR996_10155 PF00672 HAMP domain DR996_10155 PF00072 Response regulator receiver domain DR996_10155 PF01627 Hpt domain DR996_10160 PF10415 Fumarase C C-terminus DR996_10160 PF00206 Lyase DR996_10175 PF00474 Sodium:solute symporter family DR996_10185 PF01914 MarC family integral membrane protein DR996_10190 PF00196 Bacterial regulatory proteins, luxR family DR996_10190 PF00072 Response regulator receiver domain DR996_10195 PF11412 Disulphide bond corrector protein DsbC DR996_10195 PF02683 Cytochrome C biogenesis protein transmembrane region DR996_10200 PF03605 Anaerobic c4-dicarboxylate membrane transporter DR996_10205 PF00206 Lyase DR996_10205 PF10415 Fumarase C C-terminus DR996_10210 PF04186 FxsA cytoplasmic membrane protein DR996_10215 PF00588 SpoU rRNA Methylase family DR996_10220 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DR996_10220 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DR996_10225 PF16527 Two-component sensor protein CpxA, periplasmic domain DR996_10225 PF00512 His Kinase A (phospho-acceptor) domain DR996_10225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_10225 PF00672 HAMP domain DR996_10230 PF00072 Response regulator receiver domain DR996_10230 PF00486 Transcriptional regulatory protein, C terminal DR996_10235 PF07813 LTXXQ motif family protein DR996_10240 PF01545 Cation efflux family DR996_10240 PF16916 Dimerisation domain of Zinc Transporter DR996_10245 PF00365 Phosphofructokinase DR996_10250 PF01554 MatE DR996_10255 PF00166 Chaperonin 10 Kd subunit DR996_10260 PF00118 TCP-1/cpn60 chaperonin family DR996_10270 PF02308 MgtC family DR996_10275 PF04055 Radical SAM superfamily DR996_10280 PF08207 Elongation factor P (EF-P) KOW-like domain DR996_10280 PF01132 Elongation factor P (EF-P) OB domain DR996_10280 PF09285 Elongation factor P, C-terminal DR996_10295 PF02313 Fumarate reductase subunit D DR996_10300 PF02300 Fumarate reductase subunit C DR996_10305 PF13085 2Fe-2S iron-sulfur cluster binding domain DR996_10305 PF13183 4Fe-4S dicluster domain DR996_10310 PF00890 FAD binding domain DR996_10310 PF02910 Fumarate reductase flavoprotein C-term DR996_10315 PF00152 tRNA synthetases class II (D, K and N) DR996_10325 PF08360 QacR-like protein, C-terminal region DR996_10325 PF00440 Bacterial regulatory proteins, tetR family DR996_10335 PF01551 Peptidase family M23 DR996_10340 PF00132 Bacterial transferase hexapeptide (six repeats) DR996_10340 PF06426 Serine acetyltransferase, N-terminal DR996_10345 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DR996_10345 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DR996_10350 PF02556 Preprotein translocase subunit SecB DR996_10355 PF00581 Rhodanese-like domain DR996_10360 PF06415 BPG-independent PGAM N-terminus (iPGM_N) DR996_10360 PF01676 Metalloenzyme superfamily DR996_10370 PF02743 Cache domain DR996_10370 PF00672 HAMP domain DR996_10370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DR996_10375 PF00939 Sodium:sulfate symporter transmembrane region DR996_10380 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DR996_10390 PF02666 Phosphatidylserine decarboxylase DR996_10395 PF03193 RsgA GTPase DR996_10400 PF00929 Exonuclease DR996_10475 PF08331 Domain of unknown function (DUF1730) DR996_10480 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DR996_10485 PF01520 N-acetylmuramoyl-L-alanine amidase DR996_10490 PF01119 DNA mismatch repair protein, C-terminal domain DR996_10490 PF08676 MutL C terminal dimerisation domain DR996_10500 PF17209 Hfq protein DR996_10505 PF01926 50S ribosome-binding GTPase DR996_10505 PF13167 GTP-binding GTPase N-terminal DR996_10505 PF16360 GTP-binding GTPase Middle Region DR996_10510 PF01145 SPFH domain / Band 7 family DR996_10510 PF12221 Bacterial membrane protein N terminal DR996_10515 PF01145 SPFH domain / Band 7 family DR996_10520 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) DR996_10525 PF00709 Adenylosuccinate synthetase DR996_10535 PF08238 Sel1 repeat DR996_10540 PF00042 Globin DR996_10540 PF00970 Oxidoreductase FAD-binding domain DR996_10540 PF00175 Oxidoreductase NAD-binding domain DR996_10545 PF02082 Transcriptional regulator DR996_10550 PF08461 Ribonuclease R winged-helix domain DR996_10550 PF00773 RNB domain DR996_10550 PF08206 Ribonuclease B OB domain DR996_10550 PF00575 S1 RNA binding domain DR996_10550 PF17876 Cold shock domain DR996_10555 PF00588 SpoU rRNA Methylase family DR996_10555 PF08032 RNA 2'-O ribose methyltransferase substrate binding DR996_10560 PF13419 Haloacid dehalogenase-like hydrolase DR996_10565 PF00579 tRNA synthetases class I (W and Y) DR996_10580 PF00117 Glutamine amidotransferase class-I DR996_10585 PF00202 Aminotransferase class-III DR996_10590 PF04958 Arginine N-succinyltransferase beta subunit DR996_10595 PF00171 Aldehyde dehydrogenase family DR996_10605 PF13545 Crp-like helix-turn-helix domain DR996_10605 PF00027 Cyclic nucleotide-binding domain DR996_10610 PF00485 Phosphoribulokinase / Uridine kinase family DR996_10615 PF06794 Uncharacterised protein family (UPF0270) DR996_10620 PF00561 alpha/beta hydrolase fold DR996_10630 PF12848 ABC transporter DR996_10630 PF00005 ABC transporter DR996_10640 PF02525 Flavodoxin-like fold DR996_10645 PF02254 TrkA-N domain DR996_10645 PF00999 Sodium/hydrogen exchanger family DR996_10655 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DR996_10665 PF01112 Asparaginase DR996_10670 PF04102 SlyX DR996_10680 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DR996_10680 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DR996_10685 PF08348 YheO-like PAS domain DR996_10685 PF13309 HTH domain DR996_10690 PF02635 DsrE/DsrF-like family DR996_10695 PF02635 DsrE/DsrF-like family DR996_10700 PF04077 DsrH like protein DR996_10705 PF00164 Ribosomal protein S12/S23 DR996_10710 PF00177 Ribosomal protein S7p/S5e DR996_10715 PF03144 Elongation factor Tu domain 2 DR996_10715 PF00679 Elongation factor G C-terminus DR996_10715 PF00009 Elongation factor Tu GTP binding domain DR996_10715 PF14492 Elongation Factor G, domain II DR996_10715 PF03764 Elongation factor G, domain IV DR996_10720 PF03144 Elongation factor Tu domain 2 DR996_10720 PF03143 Elongation factor Tu C-terminal domain DR996_10720 PF00009 Elongation factor Tu GTP binding domain DR996_10725 PF04324 BFD-like [2Fe-2S] binding domain DR996_10730 PF00210 Ferritin-like domain DR996_10735 PF03949 Malic enzyme, NAD binding domain DR996_10735 PF00390 Malic enzyme, N-terminal domain DR996_10740 PF01340 Met Apo-repressor, MetJ DR996_10745 PF01053 Cys/Met metabolism PLP-dependent enzyme DR996_10750 PF00696 Amino acid kinase family DR996_10750 PF03447 Homoserine dehydrogenase, NAD binding domain DR996_10750 PF00742 Homoserine dehydrogenase DR996_10755 PF02219 Methylenetetrahydrofolate reductase DR996_10765 PF00311 Phosphoenolpyruvate carboxylase DR996_10770 PF01546 Peptidase family M20/M25/M40 DR996_10770 PF07687 Peptidase dimerisation domain DR996_10775 PF02774 Semialdehyde dehydrogenase, dimerisation domain DR996_10775 PF01118 Semialdehyde dehydrogenase, NAD binding domain DR996_10780 PF00696 Amino acid kinase family DR996_10785 PF00764 Arginosuccinate synthase DR996_10790 PF00206 Lyase DR996_10790 PF14698 Argininosuccinate lyase C-terminal DR996_10790 PF00583 Acetyltransferase (GNAT) family DR996_10805 PF07992 Pyridine nucleotide-disulphide oxidoreductase DR996_10805 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DR996_10810 PF00462 Glutaredoxin DR996_10810 PF08534 Redoxin DR996_10815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_10815 PF03466 LysR substrate binding domain DR996_10820 PF00905 Penicillin binding protein transpeptidase domain DR996_10820 PF00912 Transglycosylase DR996_10820 PF17092 Penicillin-binding protein OB-like domain DR996_10845 PF07660 Secretin and TonB N terminus short domain DR996_10845 PF03958 Bacterial type II/III secretion system short domain DR996_10845 PF00263 Bacterial type II and III secretion system protein DR996_10845 PF11741 AMIN domain DR996_10850 PF01202 Shikimate kinase DR996_10855 PF01761 3-dehydroquinate synthase DR996_10865 PF02086 D12 class N6 adenine-specific DNA methyltransferase DR996_10870 PF00834 Ribulose-phosphate 3 epimerase family DR996_10875 PF01250 Ribosomal protein S6 DR996_10880 PF00436 Single-strand binding protein family DR996_10885 PF01084 Ribosomal protein S18 DR996_10890 PF01281 Ribosomal protein L9, N-terminal domain DR996_10890 PF03948 Ribosomal protein L9, C-terminal domain DR996_10900 PF03796 DnaB-like helicase C terminal domain DR996_10900 PF00772 DnaB-like helicase N terminal domain DR996_10905 PF00842 Alanine racemase, C-terminal domain DR996_10905 PF01168 Alanine racemase, N-terminal domain DR996_10915 PF01894 Uncharacterised protein family UPF0047 DR996_10920 PF00342 Phosphoglucose isomerase DR996_10930 PF01475 Ferric uptake regulator family DR996_10935 PF01207 Dihydrouridine synthase (Dus) DR996_10955 PF00667 FAD binding domain DR996_10955 PF00258 Flavodoxin DR996_10955 PF00175 Oxidoreductase NAD-binding domain DR996_10960 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DR996_10960 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DR996_10965 PF01507 Phosphoadenosine phosphosulfate reductase family DR996_11030 PF00999 Sodium/hydrogen exchanger family DR996_11035 PF00809 Pterin binding enzyme DR996_11035 PF02965 Vitamin B12 dependent methionine synthase, activation domain DR996_11035 PF02607 B12 binding domain DR996_11035 PF02310 B12 binding domain DR996_11035 PF02574 Homocysteine S-methyltransferase DR996_11040 PF01842 ACT domain DR996_11040 PF00696 Amino acid kinase family DR996_11050 PF00266 Aminotransferase class-V DR996_11060 PF17760 UvrA interaction domain DR996_11060 PF17755 UvrA DNA-binding domain DR996_11060 PF00005 ABC transporter DR996_11065 PF00483 Nucleotidyl transferase DR996_11070 PF00196 Bacterial regulatory proteins, luxR family DR996_11075 PF00436 Single-strand binding protein family DR996_11080 PF00990 Diguanylate cyclase, GGDEF domain DR996_11080 PF17157 Gammaproteobacterial periplasmic sensor domain DR996_11080 PF00563 EAL domain DR996_11100 PF03958 Bacterial type II/III secretion system short domain DR996_11100 PF00263 Bacterial type II and III secretion system protein DR996_11105 PF13401 AAA domain DR996_11105 PF01471 Putative peptidoglycan binding domain DR996_11115 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DR996_11115 PF00437 Type II/IV secretion system protein DR996_11120 PF00482 Type II secretion system (T2SS), protein F DR996_11130 PF00114 Pilin (bacterial filament) DR996_11130 PF07963 Prokaryotic N-terminal methylation motif DR996_11170 PF04085 rod shape-determining protein MreC DR996_11175 PF04093 rod shape-determining protein MreD DR996_11180 PF02545 Maf-like protein DR996_11185 PF10150 Ribonuclease E/G family DR996_11185 PF00575 S1 RNA binding domain DR996_11190 PF13502 AsmA-like C-terminal region DR996_11190 PF13116 Protein of unknown function DR996_11195 PF00795 Carbon-nitrogen hydrolase DR996_11200 PF01523 Putative modulator of DNA gyrase DR996_11205 PF13638 PIN domain DR996_11205 PF02562 PhoH-like protein DR996_11210 PF00176 SNF2 family N-terminal domain DR996_11210 PF18337 RapA N-terminal Tudor like domain DR996_11210 PF12137 RNA polymerase recycling family C-terminal DR996_11210 PF00271 Helicase conserved C-terminal domain DR996_11210 PF18339 RapA N-terminal Tudor like domain 1 DR996_11235 PF04751 Protein of unknown function (DUF615) DR996_11240 PF01523 Putative modulator of DNA gyrase DR996_11245 PF00571 CBS domain DR996_11245 PF01769 Divalent cation transporter DR996_11245 PF03448 MgtE intracellular N domain DR996_11250 PF00381 PTS HPr component phosphorylation site DR996_11255 PF03668 P-loop ATPase protein family DR996_11260 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DR996_11265 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DR996_11270 PF00309 Sigma-54 factor, Activator interacting domain (AID) DR996_11270 PF04552 Sigma-54, DNA binding domain DR996_11270 PF04963 Sigma-54 factor, core binding domain DR996_11275 PF12399 Branched-chain amino acid ATP-binding cassette transporter DR996_11275 PF00005 ABC transporter DR996_11280 PF03968 OstA-like protein DR996_11290 PF01380 SIS domain DR996_11290 PF00571 CBS domain DR996_11295 PF01699 Sodium/calcium exchanger protein DR996_11300 PF00005 ABC transporter DR996_11305 PF02405 Permease MlaE DR996_11310 PF02470 MlaD protein DR996_11315 PF05494 MlaC protein DR996_11325 PF01722 BolA-like protein DR996_11330 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DR996_11335 PF01553 Acyltransferase DR996_11340 PF01042 Endoribonuclease L-PSP DR996_11345 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain DR996_11345 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain DR996_11350 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DR996_11350 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DR996_11360 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DR996_11360 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DR996_11370 PF06877 Regulator of ribonuclease activity B DR996_11380 PF00583 Acetyltransferase (GNAT) family DR996_11390 PF00133 tRNA synthetases class I (I, L, M and V) DR996_11390 PF10458 Valyl tRNA synthetase tRNA binding arm DR996_11390 PF08264 Anticodon-binding domain of tRNA DR996_11395 PF04364 DNA polymerase III chi subunit, HolC DR996_11420 PF00106 short chain dehydrogenase DR996_11530 PF01522 Polysaccharide deacetylase DR996_11535 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DR996_11545 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit DR996_11700 PF04960 Glutaminase DR996_11705 PF06969 HemN C-terminal domain DR996_11705 PF04055 Radical SAM superfamily DR996_11710 PF01725 Ham1 family DR996_11720 PF02594 Uncharacterised ACR, YggU family COG1872 DR996_11725 PF02325 YGGT family DR996_11730 PF14748 Pyrroline-5-carboxylate reductase dimerisation DR996_11730 PF03807 NADP oxidoreductase coenzyme F420-dependent DR996_11735 PF01168 Alanine racemase, N-terminal domain DR996_11740 PF00437 Type II/IV secretion system protein DR996_11745 PF00437 Type II/IV secretion system protein DR996_11750 PF03652 Holliday junction resolvase DR996_11755 PF02622 Uncharacterized ACR, COG1678 DR996_11760 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain DR996_11760 PF02951 Prokaryotic glutathione synthetase, N-terminal domain DR996_11765 PF04452 RNA methyltransferase DR996_11770 PF04231 Endonuclease I DR996_11775 PF17283 SprT-like zinc ribbon domain DR996_11775 PF10263 SprT-like family DR996_11785 PF00438 S-adenosylmethionine synthetase, N-terminal domain DR996_11785 PF02773 S-adenosylmethionine synthetase, C-terminal domain DR996_11785 PF02772 S-adenosylmethionine synthetase, central domain DR996_11790 PF02779 Transketolase, pyrimidine binding domain DR996_11790 PF00456 Transketolase, thiamine diphosphate binding domain DR996_11790 PF02780 Transketolase, C-terminal domain DR996_11800 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DR996_11800 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DR996_11805 PF00162 Phosphoglycerate kinase DR996_11810 PF01116 Fructose-bisphosphate aldolase class-II DR996_11815 PF05552 Conserved TM helix DR996_11815 PF00924 Mechanosensitive ion channel DR996_11825 PF01810 LysE type translocator DR996_11830 PF03466 LysR substrate binding domain DR996_11830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_11835 PF04402 Protein of unknown function (DUF541) DR996_11845 PF01842 ACT domain DR996_11845 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DR996_11845 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DR996_11850 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DR996_11855 PF01812 5-formyltetrahydrofolate cyclo-ligase family DR996_11865 PF05164 Cell division protein ZapA DR996_11875 PF03695 Uncharacterised protein family (UPF0149) DR996_11880 PF01494 FAD binding domain DR996_11885 PF01494 FAD binding domain DR996_11905 PF03937 Flavinator of succinate dehydrogenase DR996_11915 PF00890 FAD binding domain DR996_11915 PF02910 Fumarate reductase flavoprotein C-term DR996_11925 PF04542 Sigma-70 region 2 DR996_11925 PF08281 Sigma-70, region 4 DR996_11930 PF03872 Anti sigma-E protein RseA, N-terminal domain DR996_11930 PF03873 Anti sigma-E protein RseA, C-terminal domain DR996_11935 PF03888 MucB/RseB N-terminal domain DR996_11935 PF17188 MucB/RseB C-terminal domain DR996_11945 PF06421 GTP-binding protein LepA C-terminus DR996_11945 PF03144 Elongation factor Tu domain 2 DR996_11945 PF00009 Elongation factor Tu GTP binding domain DR996_11945 PF00679 Elongation factor G C-terminus DR996_11950 PF10502 Signal peptidase, peptidase S26 DR996_11955 PF14622 Ribonuclease-III-like DR996_11955 PF00035 Double-stranded RNA binding motif DR996_11960 PF01926 50S ribosome-binding GTPase DR996_11960 PF07650 KH domain DR996_11965 PF11967 Recombination protein O N terminal DR996_11965 PF02565 Recombination protein O C terminal DR996_11970 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ DR996_11975 PF01648 4'-phosphopantetheinyl transferase superfamily DR996_11980 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DR996_11980 PF00072 Response regulator receiver domain DR996_11980 PF00512 His Kinase A (phospho-acceptor) domain DR996_11980 PF01627 Hpt domain DR996_11980 PF00672 HAMP domain DR996_11980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_11990 PF05958 tRNA (Uracil-5-)-methyltransferase DR996_11990 PF01938 TRAM domain DR996_11995 PF02824 TGS domain DR996_11995 PF04607 Region found in RelA / SpoT proteins DR996_11995 PF13291 ACT domain DR996_12000 PF03819 MazG nucleotide pyrophosphohydrolase domain DR996_12005 PF00117 Glutamine amidotransferase class-I DR996_12005 PF06418 CTP synthase N-terminus DR996_12010 PF00113 Enolase, C-terminal TIM barrel domain DR996_12010 PF03952 Enolase, N-terminal domain DR996_12015 PF04977 Septum formation initiator DR996_12020 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DR996_12025 PF02542 YgbB family DR996_12030 PF01142 tRNA pseudouridine synthase D (TruD) DR996_12035 PF01975 Survival protein SurE DR996_12045 PF01551 Peptidase family M23 DR996_12045 PF01476 LysM domain DR996_12050 PF04542 Sigma-70 region 2 DR996_12050 PF04539 Sigma-70 region 3 DR996_12050 PF00140 Sigma-70 factor, region 1.2 DR996_12050 PF04545 Sigma-70, region 4 DR996_12055 PF05190 MutS family domain IV DR996_12055 PF05188 MutS domain II DR996_12055 PF01624 MutS domain I DR996_12055 PF05192 MutS domain III DR996_12055 PF00488 MutS domain V DR996_12060 PF02464 Competence-damaged protein DR996_12065 PF00154 recA bacterial DNA recombination protein DR996_12070 PF02631 RecX family DR996_12080 PF00696 Amino acid kinase family DR996_12080 PF01842 ACT domain DR996_12080 PF13840 ACT domain DR996_12085 PF02599 Global regulator protein family DR996_12165 PF00196 Bacterial regulatory proteins, luxR family DR996_12170 PF04277 Oxaloacetate decarboxylase, gamma chain DR996_12175 PF00364 Biotin-requiring enzyme DR996_12175 PF02436 Conserved carboxylase domain DR996_12175 PF00682 HMGL-like DR996_12180 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit DR996_12190 PF09335 SNARE associated Golgi protein DR996_12195 PF05193 Peptidase M16 inactive domain DR996_12195 PF00675 Insulinase (Peptidase family M16) DR996_12200 PF04262 Glutamate-cysteine ligase DR996_12210 PF02664 S-Ribosylhomocysteinase (LuxS) DR996_12215 PF00571 CBS domain DR996_12215 PF01595 Cyclin M transmembrane N-terminal domain DR996_12215 PF03471 Transporter associated domain DR996_12220 PF01578 Cytochrome C assembly protein DR996_12225 PF00448 SRP54-type protein, GTPase domain DR996_12225 PF02978 Signal peptide binding domain DR996_12225 PF02881 SRP54-type protein, helical bundle domain DR996_12230 PF00886 Ribosomal protein S16 DR996_12235 PF01782 RimM N-terminal domain DR996_12235 PF05239 PRC-barrel domain DR996_12240 PF01746 tRNA (Guanine-1)-methyltransferase DR996_12245 PF01245 Ribosomal protein L19 DR996_12250 PF03884 DNA gyrase inhibitor YacG DR996_12255 PF07072 Cell division protein DR996_12260 PF01121 Dephospho-CoA kinase DR996_12265 PF06750 Bacterial Peptidase A24 N-terminal domain DR996_12265 PF01478 Type IV leader peptidase family DR996_12270 PF00482 Type II secretion system (T2SS), protein F DR996_12275 PF00437 Type II/IV secretion system protein DR996_12275 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DR996_12280 PF07963 Prokaryotic N-terminal methylation motif DR996_12280 PF00114 Pilin (bacterial filament) DR996_12285 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain DR996_12285 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain DR996_12290 PF01510 N-acetylmuramoyl-L-alanine amidase DR996_12295 PF07729 FCD domain DR996_12295 PF00392 Bacterial regulatory proteins, gntR family DR996_12300 PF17831 Pyruvate dehydrogenase E1 component middle domain DR996_12300 PF00456 Transketolase, thiamine diphosphate binding domain DR996_12305 PF00364 Biotin-requiring enzyme DR996_12305 PF02817 e3 binding domain DR996_12305 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DR996_12310 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DR996_12310 PF07992 Pyridine nucleotide-disulphide oxidoreductase DR996_12320 PF00440 Bacterial regulatory proteins, tetR family DR996_12325 PF00156 Phosphoribosyl transferase domain DR996_12330 PF00484 Carbonic anhydrase DR996_12335 PF01740 STAS domain DR996_12335 PF00916 Sulfate permease family DR996_12340 PF00005 ABC transporter DR996_12345 PF01061 ABC-2 type transporter DR996_12350 PF03279 Bacterial lipid A biosynthesis acyltransferase DR996_12355 PF02569 Pantoate-beta-alanine ligase DR996_12360 PF02548 Ketopantoate hydroxymethyltransferase DR996_12365 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DR996_12370 PF01743 Poly A polymerase head domain DR996_12370 PF12626 Polymerase A arginine-rich C-terminus DR996_12370 PF12627 Probable RNA and SrmB- binding site of polymerase A DR996_12375 PF00749 tRNA synthetases class I (E and Q), catalytic domain DR996_12380 PF01258 Prokaryotic dksA/traR C4-type zinc finger DR996_12385 PF17746 SfsA N-terminal OB domain DR996_12385 PF03749 Sugar fermentation stimulation protein RE domain DR996_12390 PF00270 DEAD/DEAH box helicase DR996_12390 PF04408 Helicase associated domain (HA2) DR996_12390 PF08482 ATP-dependent helicase C-terminal DR996_12390 PF00271 Helicase conserved C-terminal domain DR996_12395 PF00905 Penicillin binding protein transpeptidase domain DR996_12395 PF00912 Transglycosylase DR996_12395 PF14814 Bifunctional transglycosylase second domain DR996_12400 PF01734 Patatin-like phospholipase DR996_12405 PF00330 Aconitase family (aconitate hydratase) DR996_12405 PF06434 Aconitate hydratase 2 N-terminus DR996_12405 PF11791 Aconitate B N-terminal domain DR996_12415 PF06062 Uncharacterised protein family (UPF0231) DR996_12420 PF00543 Nitrogen regulatory protein P-II DR996_12425 PF00909 Ammonium Transporter Family DR996_12430 PF13416 Bacterial extracellular solute-binding protein DR996_12440 PF00005 ABC transporter DR996_12440 PF08402 TOBE domain DR996_12445 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DR996_12445 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DR996_12445 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DR996_12445 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DR996_12450 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain DR996_12450 PF06165 Glycosyltransferase family 36 DR996_12455 PF00728 Glycosyl hydrolase family 20, catalytic domain DR996_12455 PF02838 Glycosyl hydrolase family 20, domain 2 DR996_12460 PF01869 BadF/BadG/BcrA/BcrD ATPase family DR996_12470 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DR996_12470 PF00005 ABC transporter DR996_12475 PF00005 ABC transporter DR996_12475 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DR996_12480 PF00528 Binding-protein-dependent transport system inner membrane component DR996_12480 PF12911 N-terminal TM domain of oligopeptide transport permease C DR996_12485 PF00528 Binding-protein-dependent transport system inner membrane component DR996_12490 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DR996_12495 PF00072 Response regulator receiver domain DR996_12495 PF09308 LuxQ, periplasmic DR996_12495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_12495 PF00512 His Kinase A (phospho-acceptor) domain DR996_12505 PF08468 Methyltransferase small domain N-terminal DR996_12505 PF05175 Methyltransferase small domain DR996_12510 PF01594 AI-2E family transporter DR996_12520 PF00202 Aminotransferase class-III DR996_12525 PF01521 Iron-sulphur cluster biosynthesis DR996_12530 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DR996_12535 PF00873 AcrB/AcrD/AcrF family DR996_12540 PF01551 Peptidase family M23 DR996_12540 PF01476 LysM domain DR996_12540 PF08525 Opacity-associated protein A N-terminal motif DR996_12545 PF00579 tRNA synthetases class I (W and Y) DR996_12560 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family DR996_12565 PF13609 Gram-negative porin DR996_12570 PF01272 Transcription elongation factor, GreA/GreB, C-term DR996_12570 PF03449 Transcription elongation factor, N-terminal DR996_12575 PF01985 CRS1 / YhbY (CRM) domain DR996_12580 PF01728 FtsJ-like methyltransferase DR996_12585 PF17862 AAA+ lid domain DR996_12585 PF01434 Peptidase family M41 DR996_12585 PF00004 ATPase family associated with various cellular activities (AAA) DR996_12585 PF06480 FtsH Extracellular DR996_12590 PF00809 Pterin binding enzyme DR996_12595 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DR996_12595 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DR996_12595 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DR996_12595 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DR996_12600 PF03840 Preprotein translocase SecG subunit DR996_12615 PF02576 RimP N-terminal domain DR996_12615 PF17384 RimP C-terminal SH3 domain DR996_12620 PF13184 NusA-like KH domain DR996_12620 PF08529 NusA N-terminal domain DR996_12620 PF00575 S1 RNA binding domain DR996_12625 PF00009 Elongation factor Tu GTP binding domain DR996_12625 PF08364 Bacterial translation initiation factor IF-2 associated region DR996_12625 PF04760 Translation initiation factor IF-2, N-terminal region DR996_12625 PF11987 Translation-initiation factor 2 DR996_12630 PF02033 Ribosome-binding factor A DR996_12635 PF01509 TruB family pseudouridylate synthase (N terminal domain) DR996_12635 PF09157 Pseudouridine synthase II TruB, C-terminal DR996_12635 PF16198 tRNA pseudouridylate synthase B C-terminal domain DR996_12640 PF00312 Ribosomal protein S15 DR996_12645 PF00575 S1 RNA binding domain DR996_12645 PF01138 3' exoribonuclease family, domain 1 DR996_12645 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DR996_12645 PF00013 KH domain DR996_12645 PF03725 3' exoribonuclease family, domain 2 DR996_12650 PF13181 Tetratricopeptide repeat DR996_12650 PF07719 Tetratricopeptide repeat DR996_12660 PF01554 MatE DR996_12665 PF01136 Peptidase family U32 DR996_12670 PF01136 Peptidase family U32 DR996_12675 PF00990 Diguanylate cyclase, GGDEF domain DR996_12675 PF03707 Bacterial signalling protein N terminal repeat DR996_12675 PF00563 EAL domain DR996_12680 PF02036 SCP-2 sterol transfer family DR996_12685 PF13508 Acetyltransferase (GNAT) domain DR996_12705 PF00990 Diguanylate cyclase, GGDEF domain DR996_12705 PF05230 MASE2 domain DR996_12710 PF00009 Elongation factor Tu GTP binding domain DR996_12710 PF03144 Elongation factor Tu domain 2 DR996_12710 PF16658 Class II release factor RF3, C-terminal domain DR996_12755 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DR996_12780 PF07690 Major Facilitator Superfamily DR996_12785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_12785 PF03466 LysR substrate binding domain DR996_12795 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase DR996_12800 PF01636 Phosphotransferase enzyme family DR996_12805 PF00809 Pterin binding enzyme DR996_12830 PF11799 impB/mucB/samB family C-terminal domain DR996_12830 PF00817 impB/mucB/samB family DR996_12830 PF13438 Domain of unknown function (DUF4113) DR996_12835 PF00717 Peptidase S24-like DR996_12845 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DR996_12845 PF02811 PHP domain DR996_12845 PF14579 Helix-hairpin-helix motif DR996_12845 PF07733 Bacterial DNA polymerase III alpha NTPase domain DR996_12845 PF11490 DNA polymerase III polC-type N-terminus II DR996_12845 PF00929 Exonuclease DR996_12860 PF02384 N-6 DNA Methylase DR996_12995 PF02954 Bacterial regulatory protein, Fis family DR996_12995 PF00072 Response regulator receiver domain DR996_12995 PF00158 Sigma-54 interaction domain DR996_13000 PF10411 Disulfide bond isomerase protein N-terminus DR996_13000 PF13098 Thioredoxin-like domain DR996_13015 PF10502 Signal peptidase, peptidase S26 DR996_13025 PF06834 TraU protein DR996_13055 PF00436 Single-strand binding protein family DR996_13130 PF00376 MerR family regulatory protein DR996_13130 PF09278 MerR, DNA binding DR996_13135 PF02411 MerT mercuric transport protein DR996_13140 PF00403 Heavy-metal-associated domain DR996_13145 PF03203 MerC mercury resistance protein DR996_13150 PF07992 Pyridine nucleotide-disulphide oxidoreductase DR996_13150 PF00403 Heavy-metal-associated domain DR996_13150 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DR996_13190 PF01381 Helix-turn-helix DR996_13190 PF00717 Peptidase S24-like DR996_13195 PF00009 Elongation factor Tu GTP binding domain DR996_13195 PF03144 Elongation factor Tu domain 2 DR996_13195 PF16658 Class II release factor RF3, C-terminal domain DR996_13200 PF01026 TatD related DNase DR996_13205 PF07662 Na+ dependent nucleoside transporter C-terminus DR996_13205 PF07670 Nucleoside recognition DR996_13205 PF01773 Na+ dependent nucleoside transporter N-terminus DR996_13210 PF01791 DeoC/LacD family aldolase DR996_13215 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain DR996_13215 PF00591 Glycosyl transferase family, a/b domain DR996_13215 PF02885 Glycosyl transferase family, helical bundle domain DR996_13220 PF01676 Metalloenzyme superfamily DR996_13225 PF01048 Phosphorylase superfamily DR996_13235 PF18429 Domain of unknown function (DUF5609) DR996_13245 PF18073 Rubredoxin metal binding domain DR996_13250 PF03144 Elongation factor Tu domain 2 DR996_13250 PF00009 Elongation factor Tu GTP binding domain DR996_13250 PF03764 Elongation factor G, domain IV DR996_13250 PF14492 Elongation Factor G, domain II DR996_13250 PF00679 Elongation factor G C-terminus DR996_13255 PF03466 LysR substrate binding domain DR996_13255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_13290 PF00501 AMP-binding enzyme DR996_13295 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain DR996_13295 PF01464 Transglycosylase SLT domain DR996_13370 PF00691 OmpA family DR996_13370 PF05736 OprF membrane domain DR996_13380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_13380 PF03466 LysR substrate binding domain DR996_13385 PF01204 Trehalase DR996_13395 PF13520 Amino acid permease DR996_13400 PF04074 YhcH/YjgK/YiaL DR996_13405 PF00703 Glycosyl hydrolases family 2 DR996_13405 PF02837 Glycosyl hydrolases family 2, sugar binding domain DR996_13405 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DR996_13405 PF02929 Beta galactosidase small chain DR996_13405 PF16353 Domain of unknown function(DUF4981) DR996_13410 PF00356 Bacterial regulatory proteins, lacI family DR996_13415 PF03717 Penicillin-binding Protein dimerisation domain DR996_13415 PF00905 Penicillin binding protein transpeptidase domain DR996_13420 PF16363 GDP-mannose 4,6 dehydratase DR996_13425 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain DR996_13425 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain DR996_13430 PF10509 Galactokinase galactose-binding signature DR996_13430 PF00288 GHMP kinases N terminal domain DR996_13430 PF08544 GHMP kinases C terminal DR996_13435 PF01263 Aldose 1-epimerase DR996_13440 PF00356 Bacterial regulatory proteins, lacI family DR996_13445 PF00367 phosphotransferase system, EIIB DR996_13445 PF02378 Phosphotransferase system, EIIC DR996_13455 PF01588 Putative tRNA binding domain DR996_13475 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DR996_13475 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DR996_13480 PF01464 Transglycosylase SLT domain DR996_13480 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain DR996_13485 PF02028 BCCT, betaine/carnitine/choline family transporter DR996_13490 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DR996_13490 PF07992 Pyridine nucleotide-disulphide oxidoreductase DR996_13505 PF13192 Thioredoxin domain DR996_13505 PF07992 Pyridine nucleotide-disulphide oxidoreductase DR996_13510 PF03553 Na+/H+ antiporter family DR996_13525 PF00465 Iron-containing alcohol dehydrogenase DR996_13530 PF02733 Dak1 domain DR996_13535 PF02734 DAK2 domain DR996_13540 PF02896 PEP-utilising enzyme, TIM barrel domain DR996_13540 PF00391 PEP-utilising enzyme, mobile domain DR996_13540 PF05524 PEP-utilising enzyme, N-terminal DR996_13545 PF00158 Sigma-54 interaction domain DR996_13545 PF02954 Bacterial regulatory protein, Fis family DR996_13545 PF00989 PAS fold DR996_13550 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DR996_13550 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DR996_13550 PF00205 Thiamine pyrophosphate enzyme, central domain DR996_13555 PF01261 Xylose isomerase-like TIM barrel DR996_13560 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DR996_13560 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DR996_13565 PF01266 FAD dependent oxidoreductase DR996_13565 PF16901 C-terminal domain of alpha-glycerophosphate oxidase DR996_13570 PF00455 DeoR C terminal sensor domain DR996_13570 PF08220 DeoR-like helix-turn-helix domain DR996_13575 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DR996_13575 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DR996_13580 PF00230 Major intrinsic protein DR996_13590 PF07690 Major Facilitator Superfamily DR996_13595 PF03009 Glycerophosphoryl diester phosphodiesterase family DR996_13600 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle DR996_13600 PF14602 Hexapeptide repeat of succinyl-transferase DR996_13615 PF07130 YebG protein DR996_13620 PF03466 LysR substrate binding domain DR996_13620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_13630 PF11893 Domain of unknown function (DUF3413) DR996_13630 PF00884 Sulfatase DR996_13635 PF17946 RecC C-terminal domain DR996_13640 PF00580 UvrD/REP helicase N-terminal domain DR996_13640 PF13361 UvrD-like helicase C-terminal domain DR996_13640 PF12705 PD-(D/E)XK nuclease superfamily DR996_13645 PF13538 UvrD-like helicase C-terminal domain DR996_13660 PF00583 Acetyltransferase (GNAT) family DR996_13660 PF00696 Amino acid kinase family DR996_13675 PF06725 3D domain DR996_13675 PF03562 MltA specific insert domain DR996_13680 PF00899 ThiF family DR996_13685 PF02657 Fe-S metabolism associated domain DR996_13690 PF00266 Aminotransferase class-V DR996_13695 PF01965 DJ-1/PfpI family DR996_13700 PF02558 Ketopantoate reductase PanE/ApbA DR996_13700 PF08546 Ketopantoate reductase PanE/ApbA C terminal DR996_13705 PF03502 Nucleoside-specific channel-forming protein, Tsx DR996_13725 PF04542 Sigma-70 region 2 DR996_13725 PF04545 Sigma-70, region 4 DR996_13735 PF07690 Major Facilitator Superfamily DR996_13740 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DR996_13750 PF05175 Methyltransferase small domain DR996_13755 PF01722 BolA-like protein DR996_13760 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) DR996_13760 PF11973 NQRA C-terminal domain DR996_13765 PF03116 NQR2, RnfD, RnfE family DR996_13770 PF04205 FMN-binding domain DR996_13775 PF02508 Rnf-Nqr subunit, membrane protein DR996_13780 PF02508 Rnf-Nqr subunit, membrane protein DR996_13785 PF00175 Oxidoreductase NAD-binding domain DR996_13785 PF00111 2Fe-2S iron-sulfur cluster binding domain DR996_13785 PF00970 Oxidoreductase FAD-binding domain DR996_13790 PF02424 ApbE family DR996_13800 PF00072 Response regulator receiver domain DR996_13800 PF00990 Diguanylate cyclase, GGDEF domain DR996_13805 PF11798 IMS family HHH motif DR996_13805 PF11799 impB/mucB/samB family C-terminal domain DR996_13805 PF00817 impB/mucB/samB family DR996_13810 PF09382 RQC domain DR996_13810 PF16124 RecQ zinc-binding DR996_13810 PF00271 Helicase conserved C-terminal domain DR996_13810 PF00270 DEAD/DEAH box helicase DR996_13810 PF00570 HRDC domain DR996_13815 PF01272 Transcription elongation factor, GreA/GreB, C-term DR996_13815 PF03449 Transcription elongation factor, N-terminal DR996_13825 PF00704 Glycosyl hydrolases family 18 DR996_13825 PF00041 Fibronectin type III domain DR996_13830 PF00209 Sodium:neurotransmitter symporter family DR996_13840 PF06786 Uncharacterised protein family (UPF0253) DR996_13850 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DR996_13850 PF04073 Aminoacyl-tRNA editing domain DR996_13850 PF03129 Anticodon binding domain DR996_13855 PF18389 TrmO C-terminal domain DR996_13855 PF01980 tRNA-methyltransferase O DR996_13860 PF01197 Ribosomal protein L31 DR996_13865 PF00444 Ribosomal protein L36 DR996_13870 PF03806 AbgT putative transporter family DR996_13880 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 DR996_13905 PF04287 tRNA pseudouridine synthase C DR996_13910 PF00849 RNA pseudouridylate synthase DR996_13915 PF11944 Protein of unknown function (DUF3461) DR996_13920 PF01842 ACT domain DR996_13920 PF01909 Nucleotidyltransferase domain DR996_13920 PF01966 HD domain DR996_13920 PF08335 GlnD PII-uridylyltransferase DR996_13925 PF00557 Metallopeptidase family M24 DR996_13930 PF00318 Ribosomal protein S2 DR996_13935 PF00889 Elongation factor TS DR996_13940 PF00696 Amino acid kinase family DR996_13945 PF01765 Ribosome recycling factor DR996_13950 PF01255 Putative undecaprenyl diphosphate synthase DR996_13960 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DR996_13960 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase DR996_13960 PF13288 DXP reductoisomerase C-terminal domain DR996_13965 PF17820 PDZ domain DR996_13965 PF02163 Peptidase family M50 DR996_13970 PF07244 Surface antigen variable number repeat DR996_13970 PF01103 Surface antigen DR996_13975 PF03938 Outer membrane protein (OmpH-like) DR996_13980 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD DR996_13980 PF00132 Bacterial transferase hexapeptide (six repeats) DR996_13985 PF07977 FabA-like domain DR996_13990 PF00132 Bacterial transferase hexapeptide (six repeats) DR996_13990 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DR996_13995 PF02684 Lipid-A-disaccharide synthetase DR996_14000 PF01351 Ribonuclease HII DR996_14005 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DR996_14005 PF14579 Helix-hairpin-helix motif DR996_14005 PF07733 Bacterial DNA polymerase III alpha NTPase domain DR996_14005 PF02811 PHP domain DR996_14005 PF01336 OB-fold nucleic acid binding domain DR996_14010 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DR996_14015 PF09179 TilS substrate binding domain DR996_14015 PF01171 PP-loop family DR996_14015 PF11734 TilS substrate C-terminal domain DR996_14020 PF00034 Cytochrome c DR996_14025 PF00543 Nitrogen regulatory protein P-II DR996_14040 PF01476 LysM domain DR996_14040 PF01464 Transglycosylase SLT domain DR996_14045 PF16123 Hydroxyacylglutathione hydrolase C-terminus DR996_14050 PF08241 Methyltransferase domain DR996_14055 PF00075 RNase H DR996_14060 PF00929 Exonuclease DR996_14085 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DR996_14085 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DR996_14085 PF09317 Domain of unknown function (DUF1974) DR996_14085 PF02770 Acyl-CoA dehydrogenase, middle domain DR996_14090 PF13580 SIS domain DR996_14095 PF13230 Glutamine amidotransferases class-II DR996_14100 PF00551 Formyl transferase DR996_14105 PF00586 AIR synthase related protein, N-terminal domain DR996_14105 PF02769 AIR synthase related protein, C-terminal domain DR996_14115 PF00860 Permease family DR996_14130 PF03358 NADPH-dependent FMN reductase DR996_14135 PF03960 ArsC family DR996_14140 PF01435 Peptidase family M48 DR996_14140 PF13181 Tetratricopeptide repeat DR996_14150 PF01594 AI-2E family transporter DR996_14155 PF00578 AhpC/TSA family DR996_14235 PF07883 Cupin domain DR996_14250 PF09339 IclR helix-turn-helix domain DR996_14250 PF01614 Bacterial transcriptional regulator DR996_14255 PF00571 CBS domain DR996_14255 PF01380 SIS domain DR996_14275 PF02614 Glucuronate isomerase DR996_14280 PF05426 Alginate lyase DR996_14280 PF07940 Heparinase II/III-like protein DR996_14290 PF00578 AhpC/TSA family DR996_14320 PF01842 ACT domain DR996_14325 PF00701 Dihydrodipicolinate synthetase family DR996_14345 PF01546 Peptidase family M20/M25/M40 DR996_14345 PF07687 Peptidase dimerisation domain DR996_14350 PF03960 ArsC family DR996_14370 PF11143 Protein of unknown function (DUF2919) DR996_14375 PF04261 Dyp-type peroxidase family DR996_14380 PF12833 Helix-turn-helix domain DR996_14385 PF02056 Family 4 glycosyl hydrolase DR996_14385 PF11975 Family 4 glycosyl hydrolase C-terminal domain DR996_14400 PF00700 Bacterial flagellin C-terminal helical region DR996_14400 PF00669 Bacterial flagellin N-terminal helical region DR996_14400 PF07196 Flagellin hook IN motif DR996_14410 PF00700 Bacterial flagellin C-terminal helical region DR996_14410 PF00669 Bacterial flagellin N-terminal helical region DR996_14410 PF07196 Flagellin hook IN motif DR996_14415 PF00700 Bacterial flagellin C-terminal helical region DR996_14415 PF07196 Flagellin hook IN motif DR996_14415 PF00669 Bacterial flagellin N-terminal helical region DR996_14420 PF03646 FlaG protein DR996_14425 PF07195 Flagellar hook-associated protein 2 C-terminus DR996_14425 PF07196 Flagellin hook IN motif DR996_14425 PF02465 Flagellar hook-associated protein 2 N-terminus DR996_14435 PF02561 Flagellar protein FliS DR996_14440 PF02954 Bacterial regulatory protein, Fis family DR996_14440 PF06490 Flagellar regulatory protein FleQ DR996_14440 PF00158 Sigma-54 interaction domain DR996_14445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_14445 PF00512 His Kinase A (phospho-acceptor) domain DR996_14450 PF02954 Bacterial regulatory protein, Fis family DR996_14450 PF00072 Response regulator receiver domain DR996_14450 PF00158 Sigma-54 interaction domain DR996_14455 PF02049 Flagellar hook-basal body complex protein FliE DR996_14460 PF01514 Secretory protein of YscJ/FliF family DR996_14460 PF08345 Flagellar M-ring protein C-terminal DR996_14465 PF14841 FliG middle domain DR996_14465 PF01706 FliG C-terminal domain DR996_14465 PF14842 FliG N-terminal domain DR996_14475 PF18269 T3SS EscN ATPase C-terminal domain DR996_14475 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DR996_14500 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DR996_14500 PF02154 Flagellar motor switch protein FliM DR996_14505 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DR996_14510 PF04347 Flagellar biosynthesis protein, FliO DR996_14515 PF00813 FliP family DR996_14520 PF01313 Bacterial export proteins, family 3 DR996_14525 PF01311 Bacterial export proteins, family 1 DR996_14530 PF01312 FlhB HrpN YscU SpaS Family DR996_14535 PF00771 FHIPEP family DR996_14540 PF00448 SRP54-type protein, GTPase domain DR996_14545 PF10609 NUBPL iron-transfer P-loop NTPase DR996_14550 PF04539 Sigma-70 region 3 DR996_14550 PF04542 Sigma-70 region 2 DR996_14550 PF04545 Sigma-70, region 4 DR996_14555 PF00072 Response regulator receiver domain DR996_14560 PF04344 Chemotaxis phosphatase, CheZ DR996_14565 PF01584 CheW-like domain DR996_14565 PF02895 Signal transducing histidine kinase, homodimeric domain DR996_14565 PF01627 Hpt domain DR996_14565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_14565 PF00072 Response regulator receiver domain DR996_14570 PF00072 Response regulator receiver domain DR996_14570 PF01339 CheB methylesterase DR996_14575 PF13614 AAA domain DR996_14585 PF01584 CheW-like domain DR996_14595 PF00005 ABC transporter DR996_14600 PF03379 CcmB protein DR996_14605 PF01578 Cytochrome C assembly protein DR996_14615 PF03100 CcmE DR996_14620 PF01578 Cytochrome C assembly protein DR996_14620 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal DR996_14625 PF08534 Redoxin DR996_14630 PF03918 Cytochrome C biogenesis protein DR996_14635 PF03918 Cytochrome C biogenesis protein DR996_14640 PF04333 MlaA lipoprotein DR996_14645 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) DR996_14650 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) DR996_14660 PF08281 Sigma-70, region 4 DR996_14660 PF04542 Sigma-70 region 2 DR996_14670 PF00108 Thiolase, N-terminal domain DR996_14670 PF02803 Thiolase, C-terminal domain DR996_14675 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DR996_14675 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DR996_14675 PF00378 Enoyl-CoA hydratase/isomerase DR996_14685 PF16187 Middle or third domain of peptidase_M16 DR996_14685 PF05193 Peptidase M16 inactive domain DR996_14685 PF00675 Insulinase (Peptidase family M16) DR996_14690 PF00300 Histidine phosphatase superfamily (branch 1) DR996_14695 PF01713 Smr domain DR996_14700 PF05175 Methyltransferase small domain DR996_14705 PF01264 Chorismate synthase DR996_14710 PF03458 UPF0126 domain DR996_14715 PF04315 Elongation factor P hydroxylase DR996_14720 PF08891 YfcL protein DR996_14735 PF01266 FAD dependent oxidoreductase DR996_14735 PF05430 S-adenosyl-L-methionine-dependent methyltransferase DR996_14740 PF00109 Beta-ketoacyl synthase, N-terminal domain DR996_14740 PF02801 Beta-ketoacyl synthase, C-terminal domain DR996_14750 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DR996_14750 PF11890 Domain of unknown function (DUF3410) DR996_14750 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DR996_14755 PF02774 Semialdehyde dehydrogenase, dimerisation domain DR996_14755 PF01118 Semialdehyde dehydrogenase, NAD binding domain DR996_14765 PF01416 tRNA pseudouridine synthase DR996_14775 PF17848 Acetyl-coA carboxylase zinc finger domain DR996_14775 PF01039 Carboxyl transferase domain DR996_14780 PF02875 Mur ligase family, glutamate ligase domain DR996_14780 PF08245 Mur ligase middle domain DR996_14785 PF05036 Sporulation related domain DR996_14790 PF02674 Colicin V production protein DR996_14795 PF00156 Phosphoribosyl transferase domain DR996_14800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_14800 PF03466 LysR substrate binding domain DR996_14805 PF00072 Response regulator receiver domain DR996_14815 PF04304 Protein of unknown function (DUF454) DR996_14820 PF00156 Phosphoribosyl transferase domain DR996_14825 PF12169 DNA polymerase III subunits gamma and tau domain III DR996_14825 PF12170 DNA polymerase III tau subunit V interacting with alpha DR996_14830 PF02575 YbaB/EbfC DNA-binding family DR996_14835 PF13662 Toprim domain DR996_14835 PF02132 RecR protein DR996_14855 PF00230 Major intrinsic protein DR996_14865 PF01042 Endoribonuclease L-PSP DR996_14870 PF03313 Serine dehydratase alpha chain DR996_14875 PF08348 YheO-like PAS domain DR996_14875 PF13309 HTH domain DR996_14880 PF03692 Putative zinc- or iron-chelating domain DR996_14890 PF03692 Putative zinc- or iron-chelating domain DR996_14895 PF04226 Transglycosylase associated protein DR996_14900 PF06826 Predicted Permease Membrane Region DR996_14905 PF00282 Pyridoxal-dependent decarboxylase conserved domain DR996_14910 PF05552 Conserved TM helix DR996_14910 PF00924 Mechanosensitive ion channel DR996_14920 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DR996_14930 PF00245 Alkaline phosphatase DR996_14945 PF13847 Methyltransferase domain DR996_14950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DR996_14950 PF08447 PAS fold DR996_14950 PF13426 PAS domain DR996_14955 PF01156 Inosine-uridine preferring nucleoside hydrolase DR996_14965 PF01263 Aldose 1-epimerase DR996_14970 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DR996_14970 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DR996_14975 PF01641 SelR domain DR996_14985 PF07023 Protein of unknown function (DUF1315) DR996_14990 PF17763 Glutaminase/Asparaginase C-terminal domain DR996_14990 PF00710 Asparaginase, N-terminal DR996_14995 PF01343 Peptidase family S49 DR996_15000 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DR996_15000 PF07992 Pyridine nucleotide-disulphide oxidoreductase DR996_15005 PF00881 Nitroreductase family DR996_15010 PF01751 Toprim domain DR996_15010 PF01131 DNA topoisomerase DR996_15020 PF00106 short chain dehydrogenase DR996_15025 PF00850 Histone deacetylase domain DR996_15030 PF05987 Bacterial protein of unknown function (DUF898) DR996_15045 PF11893 Domain of unknown function (DUF3413) DR996_15045 PF00884 Sulfatase DR996_15050 PF07208 Protein of unknown function (DUF1414) DR996_15055 PF04245 37-kD nucleoid-associated bacterial protein DR996_15070 PF03553 Na+/H+ antiporter family DR996_15075 PF01118 Semialdehyde dehydrogenase, NAD binding domain DR996_15075 PF02774 Semialdehyde dehydrogenase, dimerisation domain DR996_15085 PF00027 Cyclic nucleotide-binding domain DR996_15085 PF00520 Ion transport protein DR996_15090 PF01914 MarC family integral membrane protein DR996_15095 PF00171 Aldehyde dehydrogenase family DR996_15095 PF00465 Iron-containing alcohol dehydrogenase DR996_15110 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DR996_15110 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DR996_15115 PF00462 Glutaredoxin DR996_15125 PF03553 Na+/H+ antiporter family DR996_15125 PF13726 Na+-H+ antiporter family DR996_15130 PF00929 Exonuclease DR996_15135 PF00691 OmpA family DR996_15135 PF18393 MotY N-terminal domain DR996_15140 PF10952 Protein of unknown function (DUF2753) DR996_15145 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DR996_15150 PF00633 Helix-hairpin-helix motif DR996_15150 PF00730 HhH-GPD superfamily base excision DNA repair protein DR996_15150 PF10576 Iron-sulfur binding domain of endonuclease III DR996_15155 PF02508 Rnf-Nqr subunit, membrane protein DR996_15160 PF04205 FMN-binding domain DR996_15165 PF03116 NQR2, RnfD, RnfE family DR996_15170 PF10531 SLBB domain DR996_15170 PF12838 4Fe-4S dicluster domain DR996_15170 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DR996_15170 PF13375 RnfC Barrel sandwich hybrid domain DR996_15175 PF04060 Putative Fe-S cluster DR996_15180 PF02508 Rnf-Nqr subunit, membrane protein DR996_15185 PF02901 Pyruvate formate lyase-like DR996_15185 PF01228 Glycine radical DR996_15195 PF02151 UvrB/uvrC motif DR996_15195 PF04851 Type III restriction enzyme, res subunit DR996_15195 PF17757 UvrB interaction domain DR996_15195 PF00271 Helicase conserved C-terminal domain DR996_15195 PF12344 Ultra-violet resistance protein B DR996_15200 PF02954 Bacterial regulatory protein, Fis family DR996_15200 PF00072 Response regulator receiver domain DR996_15200 PF00158 Sigma-54 interaction domain DR996_15205 PF01627 Hpt domain DR996_15210 PF01933 Uncharacterised protein family UPF0052 DR996_15215 PF06463 Molybdenum Cofactor Synthesis C DR996_15215 PF04055 Radical SAM superfamily DR996_15220 PF00994 Probable molybdopterin binding domain DR996_15225 PF01967 MoaC family DR996_15230 PF02597 ThiS family DR996_15235 PF02391 MoaE protein DR996_15240 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DR996_15245 PF00528 Binding-protein-dependent transport system inner membrane component DR996_15250 PF00528 Binding-protein-dependent transport system inner membrane component DR996_15250 PF12911 N-terminal TM domain of oligopeptide transport permease C DR996_15255 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DR996_15255 PF00005 ABC transporter DR996_15260 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DR996_15260 PF00005 ABC transporter DR996_15265 PF13409 Glutathione S-transferase, N-terminal domain DR996_15270 PF13194 Domain of unknown function (DUF4010) DR996_15280 PF01515 Phosphate acetyl/butaryl transferase DR996_15280 PF07085 DRTGG domain DR996_15285 PF00871 Acetokinase family DR996_15290 PF04217 Protein of unknown function, DUF412 DR996_15305 PF02653 Branched-chain amino acid transport system / permease component DR996_15310 PF00005 ABC transporter DR996_15315 PF02903 Alpha amylase, N-terminal ig-like domain DR996_15315 PF00128 Alpha amylase, catalytic domain DR996_15320 PF00990 Diguanylate cyclase, GGDEF domain DR996_15325 PF01207 Dihydrouridine synthase (Dus) DR996_15330 PF03695 Uncharacterised protein family (UPF0149) DR996_15330 PF02810 SEC-C motif DR996_15335 PF02600 Disulfide bond formation protein DsbB DR996_15340 PF06450 Bacterial Na+/H+ antiporter B (NhaB) DR996_15345 PF07840 FadR C-terminal domain DR996_15345 PF00392 Bacterial regulatory proteins, gntR family DR996_15370 PF01588 Putative tRNA binding domain DR996_15370 PF09334 tRNA synthetases class I (M) DR996_15375 PF10609 NUBPL iron-transfer P-loop NTPase DR996_15380 PF00485 Phosphoribulokinase / Uridine kinase family DR996_15390 PF12557 Cob(I)alamin adenosyltransferase N terminal DR996_15390 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP DR996_15395 PF01451 Low molecular weight phosphotyrosine protein phosphatase DR996_15400 PF00916 Sulfate permease family DR996_15400 PF01740 STAS domain DR996_15410 PF00575 S1 RNA binding domain DR996_15410 PF10150 Ribonuclease E/G family DR996_15410 PF12111 Polyribonucleotide phosphorylase C terminal DR996_15415 PF01479 S4 domain DR996_15415 PF00849 RNA pseudouridylate synthase DR996_15420 PF02545 Maf-like protein DR996_15425 PF02620 Large ribosomal RNA subunit accumulation protein YceD DR996_15430 PF01783 Ribosomal L32p protein family DR996_15435 PF02504 Fatty acid synthesis protein DR996_15440 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DR996_15440 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DR996_15445 PF00698 Acyl transferase domain DR996_15455 PF00550 Phosphopantetheine attachment site DR996_15460 PF00109 Beta-ketoacyl synthase, N-terminal domain DR996_15460 PF02801 Beta-ketoacyl synthase, C-terminal domain DR996_15465 PF01063 Amino-transferase class IV DR996_15470 PF02618 YceG-like family DR996_15475 PF02223 Thymidylate kinase DR996_15480 PF09115 DNA polymerase III, delta subunit, C terminal DR996_15485 PF01026 TatD related DNase DR996_15490 PF00367 phosphotransferase system, EIIB DR996_15490 PF02378 Phosphotransferase system, EIIC DR996_15505 PF00209 Sodium:neurotransmitter symporter family DR996_15520 PF01734 Patatin-like phospholipase DR996_15525 PF02887 Pyruvate kinase, alpha/beta domain DR996_15525 PF00224 Pyruvate kinase, barrel domain DR996_15530 PF00480 ROK family DR996_15535 PF01584 CheW-like domain DR996_15535 PF00072 Response regulator receiver domain DR996_15540 PF01336 OB-fold nucleic acid binding domain DR996_15540 PF02811 PHP domain DR996_15540 PF14579 Helix-hairpin-helix motif DR996_15540 PF07733 Bacterial DNA polymerase III alpha NTPase domain DR996_15540 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DR996_15555 PF00106 short chain dehydrogenase DR996_15560 PF08496 Peptidase family S49 N-terminal DR996_15560 PF01343 Peptidase family S49 DR996_15565 PF08787 Alginate lyase DR996_15570 PF02224 Cytidylate kinase DR996_15575 PF00575 S1 RNA binding domain DR996_15580 PF00216 Bacterial DNA-binding protein DR996_15585 PF06305 Lipopolysaccharide assembly protein A domain DR996_15590 PF18073 Rubredoxin metal binding domain DR996_15595 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DR996_15600 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DR996_15660 PF00884 Sulfatase DR996_15665 PF00440 Bacterial regulatory proteins, tetR family DR996_15665 PF16925 Tetracyclin repressor-like, C-terminal domain DR996_15670 PF03886 ABC-type transport auxiliary lipoprotein component DR996_15675 PF02470 MlaD protein DR996_15680 PF04403 Paraquat-inducible protein A DR996_15685 PF00356 Bacterial regulatory proteins, lacI family DR996_15690 PF13442 Cytochrome C oxidase, cbb3-type, subunit III DR996_15695 PF00034 Cytochrome c DR996_15700 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DR996_15700 PF00384 Molybdopterin oxidoreductase DR996_15700 PF01568 Molydopterin dinucleotide binding domain DR996_15705 PF03916 Polysulphide reductase, NrfD DR996_15710 PF13247 4Fe-4S dicluster domain DR996_15715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_15715 PF00512 His Kinase A (phospho-acceptor) domain DR996_15720 PF00196 Bacterial regulatory proteins, luxR family DR996_15720 PF00072 Response regulator receiver domain DR996_15725 PF02837 Glycosyl hydrolases family 2, sugar binding domain DR996_15725 PF02929 Beta galactosidase small chain DR996_15725 PF16353 Domain of unknown function(DUF4981) DR996_15725 PF00703 Glycosyl hydrolases family 2 DR996_15725 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DR996_15735 PF02264 LamB porin DR996_15745 PF16874 Glycosyl hydrolase family 36 C-terminal domain DR996_15745 PF16875 Glycosyl hydrolase family 36 N-terminal domain DR996_15755 PF01966 HD domain DR996_15760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_15760 PF03466 LysR substrate binding domain DR996_15770 PF02683 Cytochrome C biogenesis protein transmembrane region DR996_15770 PF11412 Disulphide bond corrector protein DsbC DR996_15775 PF00085 Thioredoxin DR996_15795 PF00583 Acetyltransferase (GNAT) family DR996_15800 PF00440 Bacterial regulatory proteins, tetR family DR996_15810 PF00132 Bacterial transferase hexapeptide (six repeats) DR996_15815 PF00583 Acetyltransferase (GNAT) family DR996_15835 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DR996_15845 PF12704 MacB-like periplasmic core domain DR996_15845 PF02687 FtsX-like permease family DR996_15845 PF00005 ABC transporter DR996_15850 PF12704 MacB-like periplasmic core domain DR996_15850 PF02687 FtsX-like permease family DR996_15850 PF00005 ABC transporter DR996_15855 PF02687 FtsX-like permease family DR996_15855 PF00005 ABC transporter DR996_15855 PF12704 MacB-like periplasmic core domain DR996_15860 PF07733 Bacterial DNA polymerase III alpha NTPase domain DR996_15860 PF14579 Helix-hairpin-helix motif DR996_15860 PF11490 DNA polymerase III polC-type N-terminus II DR996_15860 PF02811 PHP domain DR996_15860 PF00929 Exonuclease DR996_15860 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DR996_15870 PF01810 LysE type translocator DR996_15875 PF03466 LysR substrate binding domain DR996_15875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_15885 PF01717 Cobalamin-independent synthase, Catalytic domain DR996_15900 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DR996_15900 PF00529 HlyD membrane-fusion protein of T1SS DR996_15905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_15905 PF03466 LysR substrate binding domain DR996_15945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_15945 PF00512 His Kinase A (phospho-acceptor) domain DR996_15945 PF00672 HAMP domain DR996_15950 PF00486 Transcriptional regulatory protein, C terminal DR996_15950 PF00072 Response regulator receiver domain DR996_15955 PF00535 Glycosyl transferase family 2 DR996_15960 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase DR996_15970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DR996_15970 PF00672 HAMP domain DR996_15975 PF13309 HTH domain DR996_15975 PF08348 YheO-like PAS domain DR996_15980 PF01042 Endoribonuclease L-PSP DR996_15985 PF00375 Sodium:dicarboxylate symporter family DR996_15990 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DR996_15990 PF07992 Pyridine nucleotide-disulphide oxidoreductase DR996_16020 PF11842 Domain of unknown function (DUF3362) DR996_16020 PF04055 Radical SAM superfamily DR996_16020 PF08497 Radical SAM N-terminal DR996_16025 PF00563 EAL domain DR996_16025 PF01590 GAF domain DR996_16025 PF00990 Diguanylate cyclase, GGDEF domain DR996_16025 PF00360 Phytochrome region DR996_16040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_16040 PF03466 LysR substrate binding domain DR996_16045 PF01717 Cobalamin-independent synthase, Catalytic domain DR996_16045 PF08267 Cobalamin-independent synthase, N-terminal domain DR996_16055 PF03795 YCII-related domain DR996_16060 PF03061 Thioesterase superfamily DR996_16065 PF04279 Intracellular septation protein A DR996_16075 PF00072 Response regulator receiver domain DR996_16075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_16080 PF17327 Acyl homoserine lactone synthase DR996_16085 PF00375 Sodium:dicarboxylate symporter family DR996_16090 PF00290 Tryptophan synthase alpha chain DR996_16095 PF00291 Pyridoxal-phosphate dependent enzyme DR996_16100 PF00218 Indole-3-glycerol phosphate synthase DR996_16100 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DR996_16105 PF02885 Glycosyl transferase family, helical bundle domain DR996_16105 PF00591 Glycosyl transferase family, a/b domain DR996_16110 PF00117 Glutamine amidotransferase class-I DR996_16115 PF04715 Anthranilate synthase component I, N terminal region DR996_16115 PF00425 chorismate binding enzyme DR996_16120 PF08056 Tryptophan operon leader peptide DR996_16125 PF02811 PHP domain DR996_16130 PF01300 Telomere recombination DR996_16140 PF00849 RNA pseudouridylate synthase DR996_16140 PF01479 S4 domain DR996_16145 PF04269 Protein of unknown function, DUF440 DR996_16150 PF01132 Elongation factor P (EF-P) OB domain DR996_16150 PF08207 Elongation factor P (EF-P) KOW-like domain DR996_16150 PF09285 Elongation factor P, C-terminal DR996_16160 PF00136 DNA polymerase family B DR996_16160 PF03104 DNA polymerase family B, exonuclease domain DR996_16165 PF00196 Bacterial regulatory proteins, luxR family DR996_16165 PF00072 Response regulator receiver domain DR996_16170 PF01541 GIY-YIG catalytic domain DR996_16170 PF02151 UvrB/uvrC motif DR996_16170 PF08459 UvrC Helix-hairpin-helix N-terminal DR996_16175 PF01066 CDP-alcohol phosphatidyltransferase DR996_16200 PF00202 Aminotransferase class-III DR996_16205 PF16653 Saccharopine dehydrogenase C-terminal domain DR996_16205 PF03435 Saccharopine dehydrogenase NADP binding domain DR996_16210 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DR996_16225 PF00994 Probable molybdopterin binding domain DR996_16235 PF00268 Ribonucleotide reductase, small chain DR996_16240 PF03477 ATP cone domain DR996_16240 PF02867 Ribonucleotide reductase, barrel domain DR996_16240 PF00317 Ribonucleotide reductase, all-alpha domain DR996_16255 PF03989 DNA gyrase C-terminal domain, beta-propeller DR996_16255 PF00521 DNA gyrase/topoisomerase IV, subunit A DR996_16270 PF02335 Cytochrome c552 DR996_16280 PF13247 4Fe-4S dicluster domain DR996_16285 PF03916 Polysulphide reductase, NrfD DR996_16290 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal DR996_16290 PF01578 Cytochrome C assembly protein DR996_16295 PF08534 Redoxin DR996_16300 PF03918 Cytochrome C biogenesis protein DR996_16310 PF00925 GTP cyclohydrolase II DR996_16335 PF03734 L,D-transpeptidase catalytic domain DR996_16335 PF01471 Putative peptidoglycan binding domain DR996_16340 PF05951 Bacterial protein of unknown function (DUF882) DR996_16345 PF00753 Metallo-beta-lactamase superfamily DR996_16360 PF03480 Bacterial extracellular solute-binding protein, family 7 DR996_16370 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DR996_16375 PF17200 Single Cache domain 2 DR996_16375 PF07730 Histidine kinase DR996_16380 PF00196 Bacterial regulatory proteins, luxR family DR996_16380 PF00072 Response regulator receiver domain DR996_16385 PF01047 MarR family DR996_16390 PF02028 BCCT, betaine/carnitine/choline family transporter DR996_16395 PF00672 HAMP domain DR996_16395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DR996_16415 PF00155 Aminotransferase class I and II DR996_16420 PF00672 HAMP domain DR996_16420 PF01966 HD domain DR996_16425 PF00474 Sodium:solute symporter family DR996_16430 PF16874 Glycosyl hydrolase family 36 C-terminal domain DR996_16430 PF16875 Glycosyl hydrolase family 36 N-terminal domain DR996_16435 PF00356 Bacterial regulatory proteins, lacI family DR996_16450 PF00155 Aminotransferase class I and II DR996_16450 PF00392 Bacterial regulatory proteins, gntR family DR996_16465 PF01336 OB-fold nucleic acid binding domain DR996_16465 PF00152 tRNA synthetases class II (D, K and N) DR996_16470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DR996_16470 PF00672 HAMP domain DR996_16470 PF02743 Cache domain DR996_16475 PF01242 6-pyruvoyl tetrahydropterin synthase DR996_16480 PF00072 Response regulator receiver domain DR996_16480 PF00196 Bacterial regulatory proteins, luxR family DR996_16490 PF03707 Bacterial signalling protein N terminal repeat DR996_16490 PF00990 Diguanylate cyclase, GGDEF domain DR996_16490 PF13188 PAS domain DR996_16490 PF00563 EAL domain DR996_16495 PF03313 Serine dehydratase alpha chain DR996_16495 PF03315 Serine dehydratase beta chain DR996_16500 PF03222 Tryptophan/tyrosine permease family DR996_16505 PF00293 NUDIX domain DR996_16515 PF09308 LuxQ, periplasmic DR996_16515 PF00072 Response regulator receiver domain DR996_16515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_16515 PF00512 His Kinase A (phospho-acceptor) domain DR996_16520 PF04715 Anthranilate synthase component I, N terminal region DR996_16520 PF00425 chorismate binding enzyme DR996_16535 PF04317 YcjX-like family, DUF463 DR996_16540 PF05128 Domain of unknown function (DUF697) DR996_16545 PF00158 Sigma-54 interaction domain DR996_16545 PF18024 Helix-turn-helix domain DR996_16550 PF13302 Acetyltransferase (GNAT) domain DR996_16565 PF00589 Phage integrase family DR996_16565 PF13495 Phage integrase, N-terminal SAM-like domain DR996_16610 PF00132 Bacterial transferase hexapeptide (six repeats) DR996_16720 PF00069 Protein kinase domain DR996_16720 PF03793 PASTA domain DR996_16820 PF00589 Phage integrase family DR996_16860 PF02463 RecF/RecN/SMC N terminal domain DR996_17005 PF00857 Isochorismatase family DR996_17035 PF04229 GrpB protein DR996_17115 PF07516 SecA Wing and Scaffold domain DR996_17115 PF02810 SEC-C motif DR996_17115 PF07517 SecA DEAD-like domain DR996_17115 PF01043 SecA preprotein cross-linking domain DR996_17225 PF04463 Protein of unknown function (DUF523) DR996_17365 PF01638 HxlR-like helix-turn-helix DR996_17375 PF03575 Peptidase family S51 DR996_17395 PF00474 Sodium:solute symporter family DR996_17410 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DR996_17420 PF03480 Bacterial extracellular solute-binding protein, family 7 DR996_17425 PF00356 Bacterial regulatory proteins, lacI family DR996_17430 PF03328 HpcH/HpaI aldolase/citrate lyase family DR996_17435 PF00815 Histidinol dehydrogenase DR996_17450 PF00561 alpha/beta hydrolase fold DR996_17465 PF00583 Acetyltransferase (GNAT) family DR996_17470 PF00939 Sodium:sulfate symporter transmembrane region DR996_17475 PF00497 Bacterial extracellular solute-binding proteins, family 3 DR996_17475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_17475 PF00512 His Kinase A (phospho-acceptor) domain DR996_17480 PF02954 Bacterial regulatory protein, Fis family DR996_17480 PF00072 Response regulator receiver domain DR996_17480 PF00158 Sigma-54 interaction domain DR996_17485 PF00563 EAL domain DR996_17485 PF13188 PAS domain DR996_17485 PF00990 Diguanylate cyclase, GGDEF domain DR996_17485 PF03707 Bacterial signalling protein N terminal repeat DR996_17490 PF01966 HD domain DR996_17490 PF11871 Domain of unknown function (DUF3391) DR996_17495 PF01810 LysE type translocator DR996_17500 PF11230 Protein of unknown function (DUF3029) DR996_17505 PF04055 Radical SAM superfamily DR996_17510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_17510 PF03466 LysR substrate binding domain DR996_17515 PF03741 Integral membrane protein TerC family DR996_17525 PF01966 HD domain DR996_17530 PF00106 short chain dehydrogenase DR996_17535 PF00990 Diguanylate cyclase, GGDEF domain DR996_17535 PF17158 Membrane-associated sensor, integral membrane domain DR996_17545 PF00465 Iron-containing alcohol dehydrogenase DR996_17550 PF03222 Tryptophan/tyrosine permease family DR996_17570 PF00005 ABC transporter DR996_17570 PF00664 ABC transporter transmembrane region DR996_17575 PF00664 ABC transporter transmembrane region DR996_17575 PF00005 ABC transporter DR996_17590 PF03466 LysR substrate binding domain DR996_17590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_17600 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DR996_17600 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DR996_17620 PF00012 Hsp70 protein DR996_17625 PF00012 Hsp70 protein DR996_17635 PF00990 Diguanylate cyclase, GGDEF domain DR996_17660 PF04151 Bacterial pre-peptidase C-terminal domain DR996_17660 PF02868 Thermolysin metallopeptidase, alpha-helical domain DR996_17660 PF01447 Thermolysin metallopeptidase, catalytic domain DR996_17660 PF03413 Peptidase propeptide and YPEB domain DR996_17660 PF07504 Fungalysin/Thermolysin Propeptide Motif DR996_17680 PF00005 ABC transporter DR996_17680 PF17912 MalK OB fold domain DR996_17680 PF03459 TOBE domain DR996_17685 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain DR996_17690 PF00356 Bacterial regulatory proteins, lacI family DR996_17695 PF13416 Bacterial extracellular solute-binding protein DR996_17700 PF00528 Binding-protein-dependent transport system inner membrane component DR996_17705 PF00528 Binding-protein-dependent transport system inner membrane component DR996_17720 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DR996_17720 PF01568 Molydopterin dinucleotide binding domain DR996_17720 PF00384 Molybdopterin oxidoreductase DR996_17725 PF13247 4Fe-4S dicluster domain DR996_17725 PF12800 4Fe-4S binding domain DR996_17730 PF04976 DMSO reductase anchor subunit (DmsC) DR996_17735 PF02613 Nitrate reductase delta subunit DR996_17745 PF02525 Flavodoxin-like fold DR996_17750 PF04408 Helicase associated domain (HA2) DR996_17750 PF11898 Domain of unknown function (DUF3418) DR996_17750 PF00270 DEAD/DEAH box helicase DR996_17750 PF00271 Helicase conserved C-terminal domain DR996_17750 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold DR996_17780 PF04204 Homoserine O-succinyltransferase DR996_17785 PF14706 Transposase DNA-binding DR996_17785 PF02281 Transposase Tn5 dimerisation domain DR996_17785 PF01609 Transposase DDE domain DR996_17810 PF00893 Small Multidrug Resistance protein DR996_17815 PF13520 Amino acid permease DR996_17820 PF01810 LysE type translocator DR996_17825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_17825 PF03466 LysR substrate binding domain DR996_17830 PF01370 NAD dependent epimerase/dehydratase family DR996_17835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_17835 PF03466 LysR substrate binding domain DR996_17840 PF03279 Bacterial lipid A biosynthesis acyltransferase DR996_17845 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DR996_17855 PF01047 MarR family DR996_17870 PF02074 Carboxypeptidase Taq (M32) metallopeptidase DR996_17875 PF01810 LysE type translocator DR996_17885 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DR996_17890 PF01117 Aerolysin toxin DR996_17890 PF03440 Aerolysin/Pertussis toxin (APT) domain DR996_17905 PF01235 Sodium:alanine symporter family DR996_17925 PF02311 AraC-like ligand binding domain DR996_17925 PF12833 Helix-turn-helix domain DR996_17960 PF03466 LysR substrate binding domain DR996_17960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_17965 PF00884 Sulfatase DR996_17970 PF01406 tRNA synthetases class I (C) catalytic domain DR996_17975 PF01554 MatE DR996_17980 PF00571 CBS domain DR996_17990 PF02028 BCCT, betaine/carnitine/choline family transporter DR996_17995 PF00583 Acetyltransferase (GNAT) family DR996_18000 PF00202 Aminotransferase class-III DR996_18005 PF06339 Ectoine synthase DR996_18010 PF00696 Amino acid kinase family DR996_18010 PF13840 ACT domain DR996_18020 PF00248 Aldo/keto reductase family DR996_18025 PF03466 LysR substrate binding domain DR996_18025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_18030 PF03150 Di-haem cytochrome c peroxidase DR996_18030 PF00034 Cytochrome c DR996_18035 PF14226 non-haem dioxygenase in morphine synthesis N-terminal DR996_18035 PF03171 2OG-Fe(II) oxygenase superfamily DR996_18040 PF01266 FAD dependent oxidoreductase DR996_18040 PF05690 Thiazole biosynthesis protein ThiG DR996_18050 PF07690 Major Facilitator Superfamily DR996_18055 PF00082 Subtilase family DR996_18055 PF04151 Bacterial pre-peptidase C-terminal domain DR996_18055 PF05922 Peptidase inhibitor I9 DR996_18060 PF03466 LysR substrate binding domain DR996_18060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_18065 PF05368 NmrA-like family DR996_18080 PF12833 Helix-turn-helix domain DR996_18080 PF12852 Cupin DR996_18085 PF00892 EamA-like transporter family DR996_18090 PF00174 Oxidoreductase molybdopterin binding domain DR996_18095 PF01794 Ferric reductase like transmembrane component DR996_18105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_18105 PF03466 LysR substrate binding domain DR996_18110 PF16363 GDP-mannose 4,6 dehydratase DR996_18115 PF01043 SecA preprotein cross-linking domain DR996_18115 PF07517 SecA DEAD-like domain DR996_18115 PF02810 SEC-C motif DR996_18115 PF07516 SecA Wing and Scaffold domain DR996_18130 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DR996_18145 PF00155 Aminotransferase class I and II DR996_18150 PF17203 Single cache domain 3 DR996_18150 PF00989 PAS fold DR996_18150 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain DR996_18150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_18155 PF12431 Transcriptional regulator DR996_18155 PF00072 Response regulator receiver domain DR996_18160 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain DR996_18160 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain DR996_18165 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DR996_18170 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain DR996_18170 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DR996_18200 PF01590 GAF domain DR996_18200 PF02954 Bacterial regulatory protein, Fis family DR996_18200 PF00158 Sigma-54 interaction domain DR996_18205 PF00171 Aldehyde dehydrogenase family DR996_18210 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DR996_18215 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DR996_18215 PF00529 HlyD membrane-fusion protein of T1SS DR996_18220 PF00873 AcrB/AcrD/AcrF family DR996_18225 PF16868 NMT1-like family DR996_18230 PF02743 Cache domain DR996_18230 PF00672 HAMP domain DR996_18230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DR996_18235 PF01925 Sulfite exporter TauE/SafE DR996_18240 PF01970 Tripartite tricarboxylate transporter TctA family DR996_18260 PF00583 Acetyltransferase (GNAT) family DR996_18280 PF03793 PASTA domain DR996_18280 PF00069 Protein kinase domain DR996_18315 PF10431 C-terminal, D2-small domain, of ClpB protein DR996_18315 PF07724 AAA domain (Cdc48 subfamily) DR996_18315 PF17871 AAA lid domain DR996_18315 PF00004 ATPase family associated with various cellular activities (AAA) DR996_18360 PF05593 RHS Repeat DR996_18360 PF03527 RHS protein DR996_18360 PF15606 Bacterial toxin 34 DR996_18370 PF04717 Type VI secretion system, phage-baseplate injector DR996_18370 PF16671 Actin cross-linking domain DR996_18390 PF00285 Citrate synthase, C-terminal domain DR996_18395 PF00694 Aconitase C-terminal domain DR996_18395 PF00330 Aconitase family (aconitate hydratase) DR996_18400 PF04303 PrpF protein DR996_18405 PF13193 AMP-binding enzyme C-terminal domain DR996_18405 PF16177 Acetyl-coenzyme A synthetase N-terminus DR996_18405 PF00501 AMP-binding enzyme DR996_18415 PF00089 Trypsin DR996_18430 PF04055 Radical SAM superfamily DR996_18435 PF06508 Queuosine biosynthesis protein QueC DR996_18440 PF17158 Membrane-associated sensor, integral membrane domain DR996_18440 PF00990 Diguanylate cyclase, GGDEF domain DR996_18450 PF00691 OmpA family DR996_18450 PF05736 OprF membrane domain DR996_18465 PF02412 Thrombospondin type 3 repeat DR996_18465 PF03422 Carbohydrate binding module (family 6) DR996_18480 PF10672 S-adenosylmethionine-dependent methyltransferase DR996_18480 PF17785 PUA-like domain DR996_18485 PF00672 HAMP domain DR996_18485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DR996_18490 PF00708 Acylphosphatase DR996_18495 PF04358 DsrC like protein DR996_18505 PF01027 Inhibitor of apoptosis-promoting Bax1 DR996_18510 PF00005 ABC transporter DR996_18515 PF00528 Binding-protein-dependent transport system inner membrane component DR996_18520 PF00528 Binding-protein-dependent transport system inner membrane component DR996_18525 PF00497 Bacterial extracellular solute-binding proteins, family 3 DR996_18535 PF14824 Sirohaem biosynthesis protein central DR996_18535 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DR996_18535 PF10414 Sirohaem synthase dimerisation region DR996_18540 PF04461 Protein of unknown function (DUF520) DR996_18545 PF00793 DAHP synthetase I family DR996_18565 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF DR996_18565 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF DR996_18565 PF01189 16S rRNA methyltransferase RsmB/F DR996_18570 PF02470 MlaD protein DR996_18575 PF04403 Paraquat-inducible protein A DR996_18580 PF00664 ABC transporter transmembrane region DR996_18580 PF00005 ABC transporter DR996_18585 PF13185 GAF domain DR996_18590 PF17516 ProQ C-terminal domain DR996_18590 PF04352 ProQ/FINO family DR996_18595 PF00595 PDZ domain DR996_18595 PF03572 Peptidase family S41 DR996_18595 PF17804 Tail specific protease N-terminal domain DR996_18595 PF11818 C-terminal domain of tail specific protease (DUF3340) DR996_18605 PF01433 Peptidase family M1 domain DR996_18605 PF17432 Domain of unknown function (DUF3458_C) ARM repeats DR996_18605 PF11940 Domain of unknown function (DUF3458) Ig-like fold DR996_18615 PF05088 Bacterial NAD-glutamate dehydrogenase DR996_18620 PF01180 Dihydroorotate dehydrogenase DR996_18625 PF07126 Cell-division protein ZapC DR996_18630 PF02926 THUMP domain DR996_18630 PF10672 S-adenosylmethionine-dependent methyltransferase DR996_18630 PF01170 Putative RNA methylase family UPF0020 DR996_18650 PF04957 Ribosome modulation factor DR996_18655 PF07977 FabA-like domain DR996_18660 PF05362 Lon protease (S16) C-terminal proteolytic domain DR996_18660 PF13654 AAA domain DR996_18665 PF17414 MatP C-terminal ribbon-helix-helix domain DR996_18665 PF06303 MatP N-terminal domain DR996_18690 PF09308 LuxQ, periplasmic DR996_18690 PF00512 His Kinase A (phospho-acceptor) domain DR996_18690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_18690 PF00072 Response regulator receiver domain DR996_18705 PF00115 Cytochrome C and Quinol oxidase polypeptide I DR996_18720 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP DR996_18720 PF13442 Cytochrome C oxidase, cbb3-type, subunit III DR996_18730 PF00403 Heavy-metal-associated domain DR996_18745 PF00027 Cyclic nucleotide-binding domain DR996_18745 PF13545 Crp-like helix-turn-helix domain DR996_18750 PF00582 Universal stress protein family DR996_18755 PF01171 PP-loop family DR996_18775 PF00005 ABC transporter DR996_18775 PF08402 TOBE domain DR996_18780 PF00528 Binding-protein-dependent transport system inner membrane component DR996_18785 PF00528 Binding-protein-dependent transport system inner membrane component DR996_18790 PF13416 Bacterial extracellular solute-binding protein DR996_18795 PF13416 Bacterial extracellular solute-binding protein DR996_18800 PF02146 Sir2 family DR996_18815 PF13247 4Fe-4S dicluster domain DR996_18820 PF01568 Molydopterin dinucleotide binding domain DR996_18820 PF00384 Molybdopterin oxidoreductase DR996_18820 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DR996_18830 PF02613 Nitrate reductase delta subunit DR996_18850 PF02634 FdhD/NarQ family DR996_18855 PF12848 ABC transporter DR996_18855 PF00005 ABC transporter DR996_18875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_18875 PF00512 His Kinase A (phospho-acceptor) domain DR996_18880 PF00158 Sigma-54 interaction domain DR996_18880 PF00072 Response regulator receiver domain DR996_18880 PF02954 Bacterial regulatory protein, Fis family DR996_18885 PF12849 PBP superfamily domain DR996_18890 PF00528 Binding-protein-dependent transport system inner membrane component DR996_18895 PF08402 TOBE domain DR996_18895 PF00005 ABC transporter DR996_18900 PF12804 MobA-like NTP transferase domain DR996_18905 PF03453 MoeA N-terminal region (domain I and II) DR996_18905 PF00994 Probable molybdopterin binding domain DR996_18905 PF03454 MoeA C-terminal region (domain IV) DR996_18920 PF00480 ROK family DR996_18975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DR996_18975 PF12729 Four helix bundle sensory module for signal transduction DR996_18975 PF00672 HAMP domain DR996_18980 PF00877 NlpC/P60 family DR996_18990 PF00990 Diguanylate cyclase, GGDEF domain DR996_18990 PF05230 MASE2 domain DR996_18995 PF01339 CheB methylesterase DR996_18995 PF00072 Response regulator receiver domain DR996_19000 PF03881 Fructosamine kinase DR996_19010 PF00677 Lumazine binding domain DR996_19015 PF01554 MatE DR996_19025 PF01068 ATP dependent DNA ligase domain DR996_19025 PF14743 DNA ligase OB-like domain DR996_19030 PF01740 STAS domain DR996_19035 PF00691 OmpA family DR996_19040 PF02563 Polysaccharide biosynthesis/export protein DR996_19040 PF10531 SLBB domain DR996_19055 PF02954 Bacterial regulatory protein, Fis family DR996_19055 PF00158 Sigma-54 interaction domain DR996_19055 PF00072 Response regulator receiver domain DR996_19065 PF00534 Glycosyl transferases group 1 DR996_19095 PF00664 ABC transporter transmembrane region DR996_19095 PF00005 ABC transporter DR996_19105 PF13439 Glycosyltransferase Family 4 DR996_19105 PF00534 Glycosyl transferases group 1 DR996_19145 PF00005 ABC transporter DR996_19300 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain DR996_19300 PF01464 Transglycosylase SLT domain DR996_19305 PF00501 AMP-binding enzyme DR996_19340 PF03466 LysR substrate binding domain DR996_19340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_19345 PF03144 Elongation factor Tu domain 2 DR996_19345 PF14492 Elongation Factor G, domain II DR996_19345 PF00679 Elongation factor G C-terminus DR996_19345 PF03764 Elongation factor G, domain IV DR996_19345 PF00009 Elongation factor Tu GTP binding domain DR996_19350 PF18073 Rubredoxin metal binding domain DR996_19360 PF18429 Domain of unknown function (DUF5609) DR996_19370 PF01048 Phosphorylase superfamily DR996_19375 PF01676 Metalloenzyme superfamily DR996_19380 PF00591 Glycosyl transferase family, a/b domain DR996_19380 PF02885 Glycosyl transferase family, helical bundle domain DR996_19380 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain DR996_19385 PF01791 DeoC/LacD family aldolase DR996_19390 PF07662 Na+ dependent nucleoside transporter C-terminus DR996_19390 PF01773 Na+ dependent nucleoside transporter N-terminus DR996_19390 PF07670 Nucleoside recognition DR996_19395 PF01026 TatD related DNase DR996_19400 PF00009 Elongation factor Tu GTP binding domain DR996_19400 PF03144 Elongation factor Tu domain 2 DR996_19400 PF16658 Class II release factor RF3, C-terminal domain DR996_19405 PF00717 Peptidase S24-like DR996_19405 PF01381 Helix-turn-helix DR996_19455 PF00403 Heavy-metal-associated domain DR996_19475 PF06122 Conjugative relaxosome accessory transposon protein DR996_19500 PF04002 RadC-like JAB domain DR996_19505 PF00092 von Willebrand factor type A domain DR996_19525 PF08406 CbbQ/NirQ/NorQ C-terminal DR996_19525 PF07728 AAA domain (dynein-related subfamily) DR996_19540 PF00436 Single-strand binding protein family DR996_19565 PF06986 Type-1V conjugative transfer system mating pair stabilisation DR996_19735 PF02384 N-6 DNA Methylase DR996_19750 PF14579 Helix-hairpin-helix motif DR996_19750 PF00929 Exonuclease DR996_19750 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DR996_19750 PF02811 PHP domain DR996_19750 PF11490 DNA polymerase III polC-type N-terminus II DR996_19750 PF07733 Bacterial DNA polymerase III alpha NTPase domain DR996_19760 PF00717 Peptidase S24-like DR996_19765 PF11799 impB/mucB/samB family C-terminal domain DR996_19765 PF13438 Domain of unknown function (DUF4113) DR996_19765 PF00817 impB/mucB/samB family DR996_19790 PF00809 Pterin binding enzyme DR996_19795 PF01636 Phosphotransferase enzyme family DR996_19800 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase DR996_19810 PF03466 LysR substrate binding domain DR996_19810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_19815 PF07690 Major Facilitator Superfamily DR996_19840 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DR996_19895 PF13508 Acetyltransferase (GNAT) domain DR996_19900 PF02036 SCP-2 sterol transfer family DR996_19905 PF00563 EAL domain DR996_19905 PF00990 Diguanylate cyclase, GGDEF domain DR996_19905 PF03707 Bacterial signalling protein N terminal repeat DR996_19910 PF01136 Peptidase family U32 DR996_19915 PF01136 Peptidase family U32 DR996_19920 PF01554 MatE DR996_19930 PF13181 Tetratricopeptide repeat DR996_19930 PF07719 Tetratricopeptide repeat DR996_19935 PF00575 S1 RNA binding domain DR996_19935 PF01138 3' exoribonuclease family, domain 1 DR996_19935 PF03725 3' exoribonuclease family, domain 2 DR996_19935 PF00013 KH domain DR996_19935 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DR996_19940 PF00312 Ribosomal protein S15 DR996_19945 PF16198 tRNA pseudouridylate synthase B C-terminal domain DR996_19945 PF09157 Pseudouridine synthase II TruB, C-terminal DR996_19945 PF01509 TruB family pseudouridylate synthase (N terminal domain) DR996_19950 PF02033 Ribosome-binding factor A DR996_19955 PF00009 Elongation factor Tu GTP binding domain DR996_19955 PF08364 Bacterial translation initiation factor IF-2 associated region DR996_19955 PF04760 Translation initiation factor IF-2, N-terminal region DR996_19955 PF11987 Translation-initiation factor 2 DR996_19960 PF08529 NusA N-terminal domain DR996_19960 PF00575 S1 RNA binding domain DR996_19960 PF13184 NusA-like KH domain DR996_19965 PF17384 RimP C-terminal SH3 domain DR996_19965 PF02576 RimP N-terminal domain DR996_19980 PF03840 Preprotein translocase SecG subunit DR996_19985 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DR996_19985 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DR996_19985 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DR996_19985 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DR996_19990 PF00809 Pterin binding enzyme DR996_20000 PF01728 FtsJ-like methyltransferase DR996_20005 PF01985 CRS1 / YhbY (CRM) domain DR996_20010 PF01272 Transcription elongation factor, GreA/GreB, C-term DR996_20010 PF03449 Transcription elongation factor, N-terminal DR996_20015 PF13609 Gram-negative porin DR996_20020 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family DR996_20050 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DR996_20055 PF01521 Iron-sulphur cluster biosynthesis DR996_20060 PF00202 Aminotransferase class-III DR996_20070 PF01594 AI-2E family transporter DR996_20075 PF08468 Methyltransferase small domain N-terminal DR996_20075 PF05175 Methyltransferase small domain DR996_20085 PF09308 LuxQ, periplasmic DR996_20085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_20085 PF00512 His Kinase A (phospho-acceptor) domain DR996_20085 PF00072 Response regulator receiver domain DR996_20090 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DR996_20095 PF00528 Binding-protein-dependent transport system inner membrane component DR996_20100 PF00528 Binding-protein-dependent transport system inner membrane component DR996_20100 PF12911 N-terminal TM domain of oligopeptide transport permease C DR996_20105 PF00005 ABC transporter DR996_20105 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DR996_20110 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DR996_20110 PF00005 ABC transporter DR996_20120 PF01869 BadF/BadG/BcrA/BcrD ATPase family DR996_20125 PF00728 Glycosyl hydrolase family 20, catalytic domain DR996_20125 PF02838 Glycosyl hydrolase family 20, domain 2 DR996_20130 PF06165 Glycosyltransferase family 36 DR996_20130 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain DR996_20135 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DR996_20135 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DR996_20135 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DR996_20135 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DR996_20140 PF00005 ABC transporter DR996_20140 PF08402 TOBE domain DR996_20150 PF13416 Bacterial extracellular solute-binding protein DR996_20155 PF00909 Ammonium Transporter Family DR996_20160 PF00543 Nitrogen regulatory protein P-II DR996_20165 PF06062 Uncharacterised protein family (UPF0231) DR996_20175 PF00330 Aconitase family (aconitate hydratase) DR996_20175 PF06434 Aconitate hydratase 2 N-terminus DR996_20175 PF11791 Aconitate B N-terminal domain DR996_20180 PF01734 Patatin-like phospholipase DR996_20185 PF14814 Bifunctional transglycosylase second domain DR996_20185 PF00905 Penicillin binding protein transpeptidase domain DR996_20185 PF00912 Transglycosylase DR996_20190 PF00270 DEAD/DEAH box helicase DR996_20190 PF08482 ATP-dependent helicase C-terminal DR996_20190 PF00271 Helicase conserved C-terminal domain DR996_20190 PF04408 Helicase associated domain (HA2) DR996_20195 PF03749 Sugar fermentation stimulation protein RE domain DR996_20195 PF17746 SfsA N-terminal OB domain DR996_20200 PF01258 Prokaryotic dksA/traR C4-type zinc finger DR996_20205 PF00749 tRNA synthetases class I (E and Q), catalytic domain DR996_20210 PF01743 Poly A polymerase head domain DR996_20210 PF12626 Polymerase A arginine-rich C-terminus DR996_20210 PF12627 Probable RNA and SrmB- binding site of polymerase A DR996_20215 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DR996_20220 PF02548 Ketopantoate hydroxymethyltransferase DR996_20225 PF02569 Pantoate-beta-alanine ligase DR996_20230 PF03279 Bacterial lipid A biosynthesis acyltransferase DR996_20235 PF01061 ABC-2 type transporter DR996_20240 PF00005 ABC transporter DR996_20245 PF01740 STAS domain DR996_20245 PF00916 Sulfate permease family DR996_20250 PF00484 Carbonic anhydrase DR996_20255 PF00156 Phosphoribosyl transferase domain DR996_20260 PF00440 Bacterial regulatory proteins, tetR family DR996_20270 PF07992 Pyridine nucleotide-disulphide oxidoreductase DR996_20270 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DR996_20275 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DR996_20275 PF02817 e3 binding domain DR996_20275 PF00364 Biotin-requiring enzyme DR996_20280 PF00456 Transketolase, thiamine diphosphate binding domain DR996_20280 PF17831 Pyruvate dehydrogenase E1 component middle domain DR996_20285 PF07729 FCD domain DR996_20285 PF00392 Bacterial regulatory proteins, gntR family DR996_20290 PF01510 N-acetylmuramoyl-L-alanine amidase DR996_20295 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain DR996_20295 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain DR996_20300 PF00114 Pilin (bacterial filament) DR996_20300 PF07963 Prokaryotic N-terminal methylation motif DR996_20305 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DR996_20305 PF00437 Type II/IV secretion system protein DR996_20310 PF00482 Type II secretion system (T2SS), protein F DR996_20315 PF01478 Type IV leader peptidase family DR996_20315 PF06750 Bacterial Peptidase A24 N-terminal domain DR996_20320 PF01121 Dephospho-CoA kinase DR996_20325 PF07072 Cell division protein DR996_20330 PF03884 DNA gyrase inhibitor YacG DR996_20335 PF01245 Ribosomal protein L19 DR996_20340 PF01746 tRNA (Guanine-1)-methyltransferase DR996_20345 PF01782 RimM N-terminal domain DR996_20345 PF05239 PRC-barrel domain DR996_20350 PF00886 Ribosomal protein S16 DR996_20355 PF00448 SRP54-type protein, GTPase domain DR996_20355 PF02978 Signal peptide binding domain DR996_20355 PF02881 SRP54-type protein, helical bundle domain DR996_20360 PF01578 Cytochrome C assembly protein DR996_20365 PF00571 CBS domain DR996_20365 PF03471 Transporter associated domain DR996_20365 PF01595 Cyclin M transmembrane N-terminal domain DR996_20370 PF02664 S-Ribosylhomocysteinase (LuxS) DR996_20390 PF09335 SNARE associated Golgi protein DR996_20410 PF04277 Oxaloacetate decarboxylase, gamma chain DR996_20415 PF00196 Bacterial regulatory proteins, luxR family DR996_20495 PF02599 Global regulator protein family DR996_20500 PF01842 ACT domain DR996_20500 PF13840 ACT domain DR996_20500 PF00696 Amino acid kinase family DR996_20510 PF02631 RecX family DR996_20515 PF00154 recA bacterial DNA recombination protein DR996_20520 PF02464 Competence-damaged protein DR996_20525 PF05192 MutS domain III DR996_20525 PF05188 MutS domain II DR996_20525 PF01624 MutS domain I DR996_20525 PF00488 MutS domain V DR996_20525 PF05190 MutS family domain IV DR996_20530 PF00140 Sigma-70 factor, region 1.2 DR996_20530 PF04545 Sigma-70, region 4 DR996_20530 PF04539 Sigma-70 region 3 DR996_20530 PF04542 Sigma-70 region 2 DR996_20535 PF01551 Peptidase family M23 DR996_20535 PF01476 LysM domain DR996_20545 PF01975 Survival protein SurE DR996_20550 PF01142 tRNA pseudouridine synthase D (TruD) DR996_20555 PF02542 YgbB family DR996_20560 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DR996_20565 PF04977 Septum formation initiator DR996_20570 PF00113 Enolase, C-terminal TIM barrel domain DR996_20570 PF03952 Enolase, N-terminal domain DR996_20575 PF06418 CTP synthase N-terminus DR996_20575 PF00117 Glutamine amidotransferase class-I DR996_20580 PF03819 MazG nucleotide pyrophosphohydrolase domain DR996_20585 PF04607 Region found in RelA / SpoT proteins DR996_20585 PF13291 ACT domain DR996_20585 PF02824 TGS domain DR996_20590 PF05958 tRNA (Uracil-5-)-methyltransferase DR996_20590 PF01938 TRAM domain DR996_20600 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DR996_20600 PF00672 HAMP domain DR996_20600 PF01627 Hpt domain DR996_20600 PF00512 His Kinase A (phospho-acceptor) domain DR996_20600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_20600 PF00072 Response regulator receiver domain DR996_20605 PF01648 4'-phosphopantetheinyl transferase superfamily DR996_20610 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ DR996_20615 PF11967 Recombination protein O N terminal DR996_20615 PF02565 Recombination protein O C terminal DR996_20620 PF01926 50S ribosome-binding GTPase DR996_20620 PF07650 KH domain DR996_20625 PF14622 Ribonuclease-III-like DR996_20625 PF00035 Double-stranded RNA binding motif DR996_20630 PF10502 Signal peptidase, peptidase S26 DR996_20635 PF00679 Elongation factor G C-terminus DR996_20635 PF06421 GTP-binding protein LepA C-terminus DR996_20635 PF03144 Elongation factor Tu domain 2 DR996_20635 PF00009 Elongation factor Tu GTP binding domain DR996_20645 PF17188 MucB/RseB C-terminal domain DR996_20645 PF03888 MucB/RseB N-terminal domain DR996_20650 PF03873 Anti sigma-E protein RseA, C-terminal domain DR996_20650 PF03872 Anti sigma-E protein RseA, N-terminal domain DR996_20655 PF08281 Sigma-70, region 4 DR996_20655 PF04542 Sigma-70 region 2 DR996_20665 PF02910 Fumarate reductase flavoprotein C-term DR996_20665 PF00890 FAD binding domain DR996_20675 PF03937 Flavinator of succinate dehydrogenase DR996_20695 PF01494 FAD binding domain DR996_20700 PF01494 FAD binding domain DR996_20705 PF03695 Uncharacterised protein family (UPF0149) DR996_20715 PF05164 Cell division protein ZapA DR996_20725 PF01812 5-formyltetrahydrofolate cyclo-ligase family DR996_20730 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DR996_20735 PF01842 ACT domain DR996_20735 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DR996_20735 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DR996_20745 PF04402 Protein of unknown function (DUF541) DR996_20750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_20750 PF03466 LysR substrate binding domain DR996_20755 PF01810 LysE type translocator DR996_20765 PF05552 Conserved TM helix DR996_20765 PF00924 Mechanosensitive ion channel DR996_20770 PF01116 Fructose-bisphosphate aldolase class-II DR996_20775 PF00162 Phosphoglycerate kinase DR996_20780 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DR996_20780 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DR996_20790 PF00456 Transketolase, thiamine diphosphate binding domain DR996_20790 PF02780 Transketolase, C-terminal domain DR996_20790 PF02779 Transketolase, pyrimidine binding domain DR996_20795 PF02773 S-adenosylmethionine synthetase, C-terminal domain DR996_20795 PF02772 S-adenosylmethionine synthetase, central domain DR996_20795 PF00438 S-adenosylmethionine synthetase, N-terminal domain DR996_20805 PF10263 SprT-like family DR996_20805 PF17283 SprT-like zinc ribbon domain DR996_20810 PF04231 Endonuclease I DR996_20815 PF04452 RNA methyltransferase DR996_20820 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain DR996_20820 PF02951 Prokaryotic glutathione synthetase, N-terminal domain DR996_20825 PF02622 Uncharacterized ACR, COG1678 DR996_20830 PF03652 Holliday junction resolvase DR996_20835 PF00437 Type II/IV secretion system protein DR996_20840 PF00437 Type II/IV secretion system protein DR996_20845 PF01168 Alanine racemase, N-terminal domain DR996_20850 PF14748 Pyrroline-5-carboxylate reductase dimerisation DR996_20850 PF03807 NADP oxidoreductase coenzyme F420-dependent DR996_20855 PF02325 YGGT family DR996_20860 PF02594 Uncharacterised ACR, YggU family COG1872 DR996_20870 PF01725 Ham1 family DR996_20890 PF02390 Putative methyltransferase DR996_20895 PF14815 NUDIX domain DR996_20895 PF00633 Helix-hairpin-helix motif DR996_20895 PF00730 HhH-GPD superfamily base excision DNA repair protein DR996_20905 PF01464 Transglycosylase SLT domain DR996_20905 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain DR996_20965 PF00171 Aldehyde dehydrogenase family DR996_21015 PF00072 Response regulator receiver domain DR996_21025 PF04794 YdjC-like protein DR996_21035 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit DR996_21105 PF08220 DeoR-like helix-turn-helix domain DR996_21105 PF13280 WYL domain DR996_21125 PF02899 Phage integrase, N-terminal SAM-like domain DR996_21125 PF00589 Phage integrase family DR996_21150 PF00106 short chain dehydrogenase DR996_21160 PF03739 Lipopolysaccharide export system permease LptF/LptG DR996_21165 PF03739 Lipopolysaccharide export system permease LptF/LptG DR996_21170 PF00883 Cytosol aminopeptidase family, catalytic domain DR996_21170 PF02789 Cytosol aminopeptidase family, N-terminal domain DR996_21175 PF04364 DNA polymerase III chi subunit, HolC DR996_21180 PF08264 Anticodon-binding domain of tRNA DR996_21180 PF00133 tRNA synthetases class I (I, L, M and V) DR996_21180 PF10458 Valyl tRNA synthetase tRNA binding arm DR996_21205 PF06877 Regulator of ribonuclease activity B DR996_21225 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DR996_21225 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DR996_21230 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain DR996_21230 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain DR996_21245 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DR996_21250 PF01722 BolA-like protein DR996_21280 PF01699 Sodium/calcium exchanger protein DR996_21295 PF03968 OstA-like protein DR996_21310 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DR996_21325 PF00381 PTS HPr component phosphorylation site DR996_21340 PF04751 Protein of unknown function (DUF615) DR996_21345 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DR996_21345 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DR996_21350 PF00849 RNA pseudouridylate synthase DR996_21360 PF18339 RapA N-terminal Tudor like domain 1 DR996_21360 PF00271 Helicase conserved C-terminal domain DR996_21360 PF12137 RNA polymerase recycling family C-terminal DR996_21360 PF18337 RapA N-terminal Tudor like domain DR996_21360 PF00176 SNF2 family N-terminal domain DR996_21365 PF02562 PhoH-like protein DR996_21365 PF13638 PIN domain DR996_21370 PF01523 Putative modulator of DNA gyrase DR996_21375 PF00795 Carbon-nitrogen hydrolase DR996_21380 PF13502 AsmA-like C-terminal region DR996_21380 PF13116 Protein of unknown function DR996_21385 PF10150 Ribonuclease E/G family DR996_21385 PF00575 S1 RNA binding domain DR996_21400 PF00797 N-acetyltransferase DR996_21405 PF00107 Zinc-binding dehydrogenase DR996_21405 PF08240 Alcohol dehydrogenase GroES-like domain DR996_21410 PF00756 Putative esterase DR996_21420 PF05656 Protein of unknown function (DUF805) DR996_21430 PF00990 Diguanylate cyclase, GGDEF domain DR996_21430 PF17152 Periplasmic sensor domain DR996_21455 PF00849 RNA pseudouridylate synthase DR996_21460 PF01554 MatE DR996_21465 PF00356 Bacterial regulatory proteins, lacI family DR996_21470 PF17912 MalK OB fold domain DR996_21470 PF00005 ABC transporter DR996_21475 PF00232 Glycosyl hydrolase family 1 DR996_21480 PF00528 Binding-protein-dependent transport system inner membrane component DR996_21485 PF00528 Binding-protein-dependent transport system inner membrane component DR996_21495 PF00356 Bacterial regulatory proteins, lacI family DR996_21500 PF02264 LamB porin DR996_21505 PF00990 Diguanylate cyclase, GGDEF domain DR996_21505 PF00563 EAL domain DR996_21515 PF06865 Pyrimidine/purine nucleoside phosphorylase DR996_21525 PF08329 Chitinase A, N-terminal domain DR996_21525 PF00704 Glycosyl hydrolases family 18 DR996_21545 PF03600 Citrate transporter DR996_21555 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DR996_21565 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DR996_21565 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DR996_21570 PF06029 AlkA N-terminal domain DR996_21570 PF00730 HhH-GPD superfamily base excision DNA repair protein DR996_21580 PF07681 DoxX DR996_21585 PF02678 Pirin DR996_21585 PF17954 Quercetinase C-terminal cupin domain DR996_21590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_21590 PF03466 LysR substrate binding domain DR996_21605 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DR996_21625 PF01261 Xylose isomerase-like TIM barrel DR996_21630 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DR996_21640 PF00596 Class II Aldolase and Adducin N-terminal domain DR996_21645 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DR996_21650 PF03611 PTS system sugar-specific permease component DR996_21655 PF08220 DeoR-like helix-turn-helix domain DR996_21655 PF00455 DeoR C terminal sensor domain DR996_21665 PF00194 Eukaryotic-type carbonic anhydrase DR996_21675 PF02492 CobW/HypB/UreG, nucleotide-binding domain DR996_21680 PF12833 Helix-turn-helix domain DR996_21685 PF14760 Rnk N-terminus DR996_21685 PF01272 Transcription elongation factor, GreA/GreB, C-term DR996_21690 PF01042 Endoribonuclease L-PSP DR996_21715 PF01032 FecCD transport family DR996_21725 PF00005 ABC transporter DR996_21730 PF12833 Helix-turn-helix domain DR996_21740 PF02492 CobW/HypB/UreG, nucleotide-binding domain DR996_21785 PF02386 Cation transport protein DR996_21790 PF12833 Helix-turn-helix domain DR996_21810 PF03616 Sodium/glutamate symporter DR996_21815 PF00392 Bacterial regulatory proteins, gntR family DR996_21815 PF00155 Aminotransferase class I and II DR996_21820 PF00005 ABC transporter DR996_21835 PF03616 Sodium/glutamate symporter DR996_21840 PF00132 Bacterial transferase hexapeptide (six repeats) DR996_21855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DR996_21855 PF17200 Single Cache domain 2 DR996_21855 PF00672 HAMP domain DR996_21860 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DR996_21870 PF00072 Response regulator receiver domain DR996_21870 PF04397 LytTr DNA-binding domain DR996_21890 PF14490 Helix-hairpin-helix containing domain DR996_21890 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain DR996_21890 PF13538 UvrD-like helicase C-terminal domain DR996_21895 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DR996_21910 PF13718 GNAT acetyltransferase 2 DR996_21910 PF05127 Helicase DR996_21920 PF00132 Bacterial transferase hexapeptide (six repeats) DR996_21925 PF03466 LysR substrate binding domain DR996_21925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_21935 PF00267 Gram-negative porin DR996_21940 PF02378 Phosphotransferase system, EIIC DR996_21940 PF00367 phosphotransferase system, EIIB DR996_21945 PF01380 SIS domain DR996_21950 PF01380 SIS domain DR996_21950 PF01418 Helix-turn-helix domain, rpiR family DR996_21955 PF00246 Zinc carboxypeptidase DR996_21960 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DR996_21965 PF03358 NADPH-dependent FMN reductase DR996_22000 PF03176 MMPL family DR996_22005 PF00196 Bacterial regulatory proteins, luxR family DR996_22005 PF03472 Autoinducer binding domain DR996_22010 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region DR996_22010 PF01243 Pyridoxamine 5'-phosphate oxidase DR996_22020 PF12833 Helix-turn-helix domain DR996_22025 PF14850 DNA-binding domain of Proline dehydrogenase DR996_22025 PF00171 Aldehyde dehydrogenase family DR996_22025 PF01619 Proline dehydrogenase DR996_22025 PF18327 Proline utilization A proline dehydrogenase N-terminal domain DR996_22035 PF00474 Sodium:solute symporter family DR996_22060 PF00300 Histidine phosphatase superfamily (branch 1) DR996_22075 PF01037 Lrp/AsnC ligand binding domain DR996_22090 PF00085 Thioredoxin DR996_22095 PF11412 Disulphide bond corrector protein DsbC DR996_22095 PF02683 Cytochrome C biogenesis protein transmembrane region DR996_22095 PF13098 Thioredoxin-like domain DR996_22105 PF00005 ABC transporter DR996_22105 PF00664 ABC transporter transmembrane region DR996_22125 PF00933 Glycosyl hydrolase family 3 N terminal domain DR996_22130 PF10688 Bacterial inner membrane protein DR996_22135 PF01081 KDPG and KHG aldolase DR996_22140 PF00294 pfkB family carbohydrate kinase DR996_22145 PF02614 Glucuronate isomerase DR996_22170 PF01081 KDPG and KHG aldolase DR996_22175 PF00294 pfkB family carbohydrate kinase DR996_22180 PF02614 Glucuronate isomerase DR996_22185 PF01232 Mannitol dehydrogenase Rossmann domain DR996_22185 PF08125 Mannitol dehydrogenase C-terminal domain DR996_22190 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DR996_22195 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component DR996_22200 PF03480 Bacterial extracellular solute-binding protein, family 7 DR996_22205 PF00392 Bacterial regulatory proteins, gntR family DR996_22205 PF07729 FCD domain DR996_22210 PF03786 D-mannonate dehydratase (UxuA) DR996_22215 PF00155 Aminotransferase class I and II DR996_22225 PF08281 Sigma-70, region 4 DR996_22225 PF04542 Sigma-70 region 2 DR996_22230 PF03466 LysR substrate binding domain DR996_22230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_22245 PF00270 DEAD/DEAH box helicase DR996_22245 PF00271 Helicase conserved C-terminal domain DR996_22250 PF00155 Aminotransferase class I and II DR996_22255 PF03553 Na+/H+ antiporter family DR996_22260 PF00356 Bacterial regulatory proteins, lacI family DR996_22265 PF03473 MOSC domain DR996_22265 PF03475 3-alpha domain DR996_22285 PF01037 Lrp/AsnC ligand binding domain DR996_22285 PF13404 AsnC-type helix-turn-helix domain DR996_22290 PF01810 LysE type translocator DR996_22295 PF06445 GyrI-like small molecule binding domain DR996_22305 PF12729 Four helix bundle sensory module for signal transduction DR996_22305 PF00672 HAMP domain DR996_22305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DR996_22310 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DR996_22330 PF08220 DeoR-like helix-turn-helix domain DR996_22330 PF00455 DeoR C terminal sensor domain DR996_22335 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DR996_22335 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DR996_22340 PF17042 Nucleotide-binding C-terminal domain DR996_22340 PF07005 Sugar-binding N-terminal domain DR996_22345 PF00596 Class II Aldolase and Adducin N-terminal domain DR996_22350 PF01261 Xylose isomerase-like TIM barrel DR996_22355 PF02447 GntP family permease DR996_22385 PF07992 Pyridine nucleotide-disulphide oxidoreductase DR996_22385 PF13192 Thioredoxin domain DR996_22390 PF00578 AhpC/TSA family DR996_22390 PF10417 C-terminal domain of 1-Cys peroxiredoxin DR996_22395 PF01047 MarR family DR996_22400 PF02566 OsmC-like protein DR996_22450 PF00005 ABC transporter DR996_22460 PF03466 LysR substrate binding domain DR996_22460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_22470 PF02525 Flavodoxin-like fold DR996_22480 PF00248 Aldo/keto reductase family DR996_22510 PF17200 Single Cache domain 2 DR996_22510 PF00672 HAMP domain DR996_22510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DR996_22515 PF05193 Peptidase M16 inactive domain DR996_22515 PF00675 Insulinase (Peptidase family M16) DR996_22550 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DR996_22550 PF02753 Pili assembly chaperone PapD, C-terminal domain DR996_22565 PF18766 SWI2/SNF2 ATPase DR996_22565 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) DR996_22565 PF11867 Domain of unknown function (DUF3387) DR996_22580 PF01420 Type I restriction modification DNA specificity domain DR996_22585 PF02384 N-6 DNA Methylase DR996_22590 PF00589 Phage integrase family DR996_22590 PF02899 Phage integrase, N-terminal SAM-like domain DR996_22645 PF07690 Major Facilitator Superfamily DR996_22700 PF07690 Major Facilitator Superfamily DR996_22740 PF01979 Amidohydrolase family DR996_22755 PF14490 Helix-hairpin-helix containing domain DR996_22755 PF13538 UvrD-like helicase C-terminal domain DR996_22755 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain DR996_22760 PF13538 UvrD-like helicase C-terminal domain DR996_22760 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain DR996_22760 PF14490 Helix-hairpin-helix containing domain DR996_22785 PF07690 Major Facilitator Superfamily DR996_22790 PF00474 Sodium:solute symporter family DR996_22795 PF03315 Serine dehydratase beta chain DR996_22795 PF03313 Serine dehydratase alpha chain DR996_22800 PF02378 Phosphotransferase system, EIIC DR996_22800 PF00367 phosphotransferase system, EIIB DR996_22805 PF00356 Bacterial regulatory proteins, lacI family DR996_22825 PF17179 4Fe-4S dicluster domain DR996_22830 PF10414 Sirohaem synthase dimerisation region DR996_22830 PF14824 Sirohaem biosynthesis protein central DR996_22830 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DR996_22840 PF00990 Diguanylate cyclase, GGDEF domain DR996_22845 PF00128 Alpha amylase, catalytic domain DR996_22845 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DR996_22850 PF02264 LamB porin DR996_22865 PF02903 Alpha amylase, N-terminal ig-like domain DR996_22865 PF00128 Alpha amylase, catalytic domain DR996_22865 PF16657 Maltogenic Amylase, C-terminal domain DR996_22875 PF04231 Endonuclease I DR996_22895 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain DR996_22895 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DR996_22895 PF01276 Orn/Lys/Arg decarboxylase, major domain DR996_22900 PF13520 Amino acid permease DR996_22910 PF08543 Phosphomethylpyrimidine kinase DR996_22920 PF01144 Coenzyme A transferase DR996_22925 PF01144 Coenzyme A transferase DR996_22930 PF00108 Thiolase, N-terminal domain DR996_22930 PF02803 Thiolase, C-terminal domain DR996_22950 PF00083 Sugar (and other) transporter DR996_22955 PF01261 Xylose isomerase-like TIM barrel DR996_22960 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DR996_22960 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DR996_22960 PF00205 Thiamine pyrophosphate enzyme, central domain DR996_22965 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DR996_22965 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DR996_22970 PF00294 pfkB family carbohydrate kinase DR996_22980 PF01116 Fructose-bisphosphate aldolase class-II DR996_22995 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DR996_22995 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DR996_23000 PF00375 Sodium:dicarboxylate symporter family DR996_23005 PF03193 RsgA GTPase DR996_23040 PF00343 Carbohydrate phosphorylase DR996_23045 PF02446 4-alpha-glucanotransferase DR996_23050 PF00128 Alpha amylase, catalytic domain DR996_23050 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DR996_23050 PF02806 Alpha amylase, C-terminal all-beta domain DR996_23055 PF00912 Transglycosylase DR996_23060 PF00128 Alpha amylase, catalytic domain DR996_23075 PF07670 Nucleoside recognition DR996_23080 PF07670 Nucleoside recognition DR996_23085 PF01546 Peptidase family M20/M25/M40 DR996_23085 PF07687 Peptidase dimerisation domain DR996_23090 PF06803 Protein of unknown function (DUF1232) DR996_23095 PF00375 Sodium:dicarboxylate symporter family DR996_23125 PF07690 Major Facilitator Superfamily DR996_23130 PF03466 LysR substrate binding domain DR996_23130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_23135 PF08803 Putative mono-oxygenase ydhR DR996_23145 PF02706 Chain length determinant protein DR996_23145 PF13807 G-rich domain on putative tyrosine kinase DR996_23145 PF13614 AAA domain DR996_23150 PF01451 Low molecular weight phosphotyrosine protein phosphatase DR996_23155 PF02563 Polysaccharide biosynthesis/export protein DR996_23155 PF18412 Outer-membrane lipoprotein Wza C-terminal domain DR996_23155 PF10531 SLBB domain DR996_23165 PF00881 Nitroreductase family DR996_23170 PF01914 MarC family integral membrane protein DR996_23175 PF01734 Patatin-like phospholipase DR996_23185 PF02469 Fasciclin domain DR996_23190 PF03441 FAD binding domain of DNA photolyase DR996_23190 PF00875 DNA photolyase DR996_23215 PF00317 Ribonucleotide reductase, all-alpha domain DR996_23215 PF02867 Ribonucleotide reductase, barrel domain DR996_23215 PF03477 ATP cone domain DR996_23235 PF00561 alpha/beta hydrolase fold DR996_23240 PF00768 D-alanyl-D-alanine carboxypeptidase DR996_23240 PF07943 Penicillin-binding protein 5, C-terminal domain DR996_23255 PF00881 Nitroreductase family DR996_23265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_23265 PF03466 LysR substrate binding domain DR996_23270 PF09905 DNA-binding protein VF530 DR996_23280 PF00175 Oxidoreductase NAD-binding domain DR996_23280 PF00970 Oxidoreductase FAD-binding domain DR996_23295 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) DR996_23300 PF01594 AI-2E family transporter DR996_23310 PF13533 Biotin-lipoyl like DR996_23330 PF00892 EamA-like transporter family DR996_23340 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family DR996_23345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_23345 PF03466 LysR substrate binding domain DR996_23365 PF03466 LysR substrate binding domain DR996_23365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_23370 PF07690 Major Facilitator Superfamily DR996_23380 PF03952 Enolase, N-terminal domain DR996_23380 PF00113 Enolase, C-terminal TIM barrel domain DR996_23385 PF00583 Acetyltransferase (GNAT) family DR996_23395 PF00486 Transcriptional regulatory protein, C terminal DR996_23395 PF00072 Response regulator receiver domain DR996_23400 PF00672 HAMP domain DR996_23400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_23400 PF00512 His Kinase A (phospho-acceptor) domain DR996_23415 PF00923 Transaldolase/Fructose-6-phosphate aldolase DR996_23420 PF04055 Radical SAM superfamily DR996_23425 PF02901 Pyruvate formate lyase-like DR996_23425 PF01228 Glycine radical DR996_23435 PF17853 GGDEF-like domain DR996_23435 PF12833 Helix-turn-helix domain DR996_23440 PF12852 Cupin DR996_23440 PF12833 Helix-turn-helix domain DR996_23445 PF00561 alpha/beta hydrolase fold DR996_23470 PF02322 Cytochrome bd terminal oxidase subunit II DR996_23475 PF01654 Cytochrome bd terminal oxidase subunit I DR996_23490 PF05114 Protein of unknown function (DUF692) DR996_23510 PF02567 Phenazine biosynthesis-like protein DR996_23515 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DR996_23530 PF00005 ABC transporter DR996_23530 PF12848 ABC transporter DR996_23535 PF09905 DNA-binding protein VF530 DR996_23540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_23540 PF03466 LysR substrate binding domain DR996_23545 PF03358 NADPH-dependent FMN reductase DR996_23550 PF13409 Glutathione S-transferase, N-terminal domain DR996_23555 PF00005 ABC transporter DR996_23555 PF12848 ABC transporter DR996_23570 PF03466 LysR substrate binding domain DR996_23570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_23585 PF00440 Bacterial regulatory proteins, tetR family DR996_23585 PF13977 BetI-type transcriptional repressor, C-terminal DR996_23600 PF00581 Rhodanese-like domain DR996_23605 PF01810 LysE type translocator DR996_23610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_23610 PF03466 LysR substrate binding domain DR996_23635 PF13977 BetI-type transcriptional repressor, C-terminal DR996_23635 PF00440 Bacterial regulatory proteins, tetR family DR996_23650 PF00581 Rhodanese-like domain DR996_23655 PF01810 LysE type translocator DR996_23660 PF03466 LysR substrate binding domain DR996_23660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_23685 PF00149 Calcineurin-like phosphoesterase DR996_23685 PF02872 5'-nucleotidase, C-terminal domain DR996_23695 PF07971 Glycosyl hydrolase family 92 DR996_23695 PF17678 Glycosyl hydrolase family 92 N-terminal domain DR996_23705 PF07971 Glycosyl hydrolase family 92 DR996_23705 PF17678 Glycosyl hydrolase family 92 N-terminal domain DR996_23710 PF17678 Glycosyl hydrolase family 92 N-terminal domain DR996_23710 PF07971 Glycosyl hydrolase family 92 DR996_23725 PF01641 SelR domain DR996_23725 PF01625 Peptide methionine sulfoxide reductase DR996_23730 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DR996_23735 PF08220 DeoR-like helix-turn-helix domain DR996_23735 PF00455 DeoR C terminal sensor domain DR996_23740 PF00356 Bacterial regulatory proteins, lacI family DR996_23740 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DR996_23745 PF02378 Phosphotransferase system, EIIC DR996_23745 PF00367 phosphotransferase system, EIIB DR996_23750 PF00155 Aminotransferase class I and II DR996_23755 PF01238 Phosphomannose isomerase type I DR996_23775 PF06628 Catalase-related immune-responsive DR996_23775 PF00199 Catalase DR996_23785 PF00080 Copper/zinc superoxide dismutase (SODC) DR996_23790 PF00857 Isochorismatase family DR996_23800 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DR996_23800 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DR996_23815 PF06942 GlpM protein DR996_23840 PF03466 LysR substrate binding domain DR996_23840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_23845 PF01048 Phosphorylase superfamily DR996_23860 PF00005 ABC transporter DR996_23860 PF00571 CBS domain DR996_23865 PF00528 Binding-protein-dependent transport system inner membrane component DR996_23875 PF02001 Protein of unknown function DUF134 DR996_23895 PF14602 Hexapeptide repeat of succinyl-transferase DR996_23895 PF00132 Bacterial transferase hexapeptide (six repeats) DR996_23895 PF12464 Maltose acetyltransferase DR996_23900 PF03707 Bacterial signalling protein N terminal repeat DR996_23900 PF00990 Diguanylate cyclase, GGDEF domain DR996_23900 PF00563 EAL domain DR996_23910 PF03764 Elongation factor G, domain IV DR996_23910 PF00679 Elongation factor G C-terminus DR996_23910 PF03144 Elongation factor Tu domain 2 DR996_23910 PF14492 Elongation Factor G, domain II DR996_23910 PF00009 Elongation factor Tu GTP binding domain DR996_23920 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DR996_23920 PF13378 Enolase C-terminal domain-like DR996_23930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_23930 PF03466 LysR substrate binding domain DR996_23935 PF07702 UTRA domain DR996_23935 PF00392 Bacterial regulatory proteins, gntR family DR996_23940 PF02378 Phosphotransferase system, EIIC DR996_23940 PF00367 phosphotransferase system, EIIB DR996_23945 PF00251 Glycosyl hydrolases family 32 N-terminal domain DR996_23945 PF08244 Glycosyl hydrolases family 32 C terminal DR996_23960 PF00376 MerR family regulatory protein DR996_23960 PF09278 MerR, DNA binding DR996_23990 PF13091 PLD-like domain DR996_23995 PF13533 Biotin-lipoyl like DR996_24000 PF00873 AcrB/AcrD/AcrF family DR996_24010 PF00873 AcrB/AcrD/AcrF family DR996_24065 PF04972 BON domain DR996_24065 PF00263 Bacterial type II and III secretion system protein DR996_24065 PF13629 Pilus formation protein N terminal region DR996_24080 PF00437 Type II/IV secretion system protein DR996_24135 PF00501 AMP-binding enzyme DR996_24135 PF13193 AMP-binding enzyme C-terminal domain DR996_24140 PF01212 Beta-eliminating lyase DR996_24145 PF02028 BCCT, betaine/carnitine/choline family transporter DR996_24150 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DR996_24150 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 DR996_24150 PF00703 Glycosyl hydrolases family 2 DR996_24150 PF02837 Glycosyl hydrolases family 2, sugar binding domain DR996_24155 PF00196 Bacterial regulatory proteins, luxR family DR996_24165 PF03707 Bacterial signalling protein N terminal repeat DR996_24165 PF00990 Diguanylate cyclase, GGDEF domain DR996_24165 PF00563 EAL domain DR996_24180 PF03616 Sodium/glutamate symporter DR996_24185 PF02600 Disulfide bond formation protein DsbB DR996_24190 PF02321 Outer membrane efflux protein DR996_24195 PF00873 AcrB/AcrD/AcrF family DR996_24200 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DR996_24205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_24205 PF03466 LysR substrate binding domain DR996_24215 PF03466 LysR substrate binding domain DR996_24215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_24245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_24245 PF03466 LysR substrate binding domain DR996_24255 PF00579 tRNA synthetases class I (W and Y) DR996_24260 PF00072 Response regulator receiver domain DR996_24260 PF00196 Bacterial regulatory proteins, luxR family DR996_24270 PF00391 PEP-utilising enzyme, mobile domain DR996_24270 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DR996_24270 PF02896 PEP-utilising enzyme, TIM barrel domain DR996_24275 PF03618 Kinase/pyrophosphorylase DR996_24280 PF00710 Asparaginase, N-terminal DR996_24280 PF17763 Glutaminase/Asparaginase C-terminal domain DR996_24285 PF00990 Diguanylate cyclase, GGDEF domain DR996_24285 PF13185 GAF domain DR996_24285 PF00563 EAL domain DR996_24300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_24300 PF03466 LysR substrate binding domain DR996_24320 PF03466 LysR substrate binding domain DR996_24320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_24325 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) DR996_24340 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DR996_24350 PF07690 Major Facilitator Superfamily DR996_24360 PF03466 LysR substrate binding domain DR996_24360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_24380 PF03466 LysR substrate binding domain DR996_24380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_24410 PF07690 Major Facilitator Superfamily DR996_24420 PF03466 LysR substrate binding domain DR996_24420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_24440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_24440 PF03466 LysR substrate binding domain DR996_24450 PF00271 Helicase conserved C-terminal domain DR996_24450 PF00270 DEAD/DEAH box helicase DR996_24480 PF00155 Aminotransferase class I and II DR996_24485 PF01497 Periplasmic binding protein DR996_24485 PF12833 Helix-turn-helix domain DR996_24490 PF03466 LysR substrate binding domain DR996_24490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_24500 PF00106 short chain dehydrogenase DR996_24545 PF01757 Acyltransferase family DR996_24550 PF01872 RibD C-terminal domain DR996_24555 PF00440 Bacterial regulatory proteins, tetR family DR996_24555 PF02909 Tetracyclin repressor-like, C-terminal domain DR996_24560 PF02798 Glutathione S-transferase, N-terminal domain DR996_24565 PF03466 LysR substrate binding domain DR996_24565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_24570 PF02525 Flavodoxin-like fold DR996_24575 PF02028 BCCT, betaine/carnitine/choline family transporter DR996_24580 PF07943 Penicillin-binding protein 5, C-terminal domain DR996_24580 PF00768 D-alanyl-D-alanine carboxypeptidase DR996_24585 PF08448 PAS fold DR996_24585 PF00990 Diguanylate cyclase, GGDEF domain DR996_24595 PF08241 Methyltransferase domain DR996_24600 PF00462 Glutaredoxin DR996_24600 PF08534 Redoxin DR996_24615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_24615 PF03466 LysR substrate binding domain DR996_24620 PF17151 Periplasmic sensor domain DR996_24620 PF00990 Diguanylate cyclase, GGDEF domain DR996_24625 PF00962 Adenosine/AMP deaminase DR996_24640 PF00313 'Cold-shock' DNA-binding domain DR996_24655 PF00313 'Cold-shock' DNA-binding domain DR996_24660 PF05726 Pirin C-terminal cupin domain DR996_24660 PF02678 Pirin DR996_24665 PF01734 Patatin-like phospholipase DR996_24675 PF01979 Amidohydrolase family DR996_24680 PF00132 Bacterial transferase hexapeptide (six repeats) DR996_24685 PF07683 Cobalamin synthesis protein cobW C-terminal domain DR996_24685 PF02492 CobW/HypB/UreG, nucleotide-binding domain DR996_24705 PF01047 MarR family DR996_24725 PF00005 ABC transporter DR996_24725 PF17912 MalK OB fold domain DR996_24730 PF00528 Binding-protein-dependent transport system inner membrane component DR996_24740 PF13416 Bacterial extracellular solute-binding protein DR996_24745 PF03009 Glycerophosphoryl diester phosphodiesterase family DR996_24750 PF00455 DeoR C terminal sensor domain DR996_24750 PF08220 DeoR-like helix-turn-helix domain DR996_24760 PF00582 Universal stress protein family DR996_24780 PF01980 tRNA-methyltransferase O DR996_24785 PF00005 ABC transporter DR996_24785 PF16326 ABC transporter C-terminal domain DR996_24785 PF12848 ABC transporter DR996_24790 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DR996_24790 PF00326 Prolyl oligopeptidase family DR996_24800 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DR996_24805 PF00873 AcrB/AcrD/AcrF family DR996_24810 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) DR996_24820 PF13302 Acetyltransferase (GNAT) domain DR996_24830 PF03150 Di-haem cytochrome c peroxidase DR996_24830 PF00034 Cytochrome c DR996_24830 PF14376 Haem-binding domain DR996_24845 PF00293 NUDIX domain DR996_24860 PF13673 Acetyltransferase (GNAT) domain DR996_24860 PF00583 Acetyltransferase (GNAT) family DR996_24865 PF08659 KR domain DR996_24865 PF16197 Ketoacyl-synthetase C-terminal extension DR996_24865 PF00109 Beta-ketoacyl synthase, N-terminal domain DR996_24865 PF02801 Beta-ketoacyl synthase, C-terminal domain DR996_24865 PF00698 Acyl transferase domain DR996_24865 PF14765 Polyketide synthase dehydratase DR996_24865 PF00550 Phosphopantetheine attachment site DR996_24865 PF08240 Alcohol dehydrogenase GroES-like domain DR996_24905 PF00873 AcrB/AcrD/AcrF family DR996_24910 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DR996_24925 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DR996_24925 PF12838 4Fe-4S dicluster domain DR996_24925 PF01568 Molydopterin dinucleotide binding domain DR996_24925 PF00384 Molybdopterin oxidoreductase DR996_24925 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DR996_24945 PF00005 ABC transporter DR996_24955 PF00672 HAMP domain DR996_24955 PF17200 Single Cache domain 2 DR996_24955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DR996_24960 PF02685 Glucokinase DR996_24960 PF01380 SIS domain DR996_24960 PF01418 Helix-turn-helix domain, rpiR family DR996_24970 PF07969 Amidohydrolase family DR996_24980 PF00474 Sodium:solute symporter family DR996_24985 PF00294 pfkB family carbohydrate kinase DR996_24990 PF01081 KDPG and KHG aldolase DR996_25000 PF00728 Glycosyl hydrolase family 20, catalytic domain DR996_25000 PF02838 Glycosyl hydrolase family 20, domain 2 DR996_25010 PF01042 Endoribonuclease L-PSP DR996_25015 PF02567 Phenazine biosynthesis-like protein DR996_25020 PF01161 Phosphatidylethanolamine-binding protein DR996_25035 PF01758 Sodium Bile acid symporter family DR996_25050 PF01638 HxlR-like helix-turn-helix DR996_25065 PF03466 LysR substrate binding domain DR996_25065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_25070 PF00248 Aldo/keto reductase family DR996_25075 PF03928 Haem-degrading DR996_25080 PF01238 Phosphomannose isomerase type I DR996_25085 PF07748 Glycosyl hydrolases family 38 C-terminal domain DR996_25085 PF09261 Alpha mannosidase middle domain DR996_25085 PF01074 Glycosyl hydrolases family 38 N-terminal domain DR996_25090 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DR996_25090 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DR996_25090 PF02378 Phosphotransferase system, EIIC DR996_25095 PF00392 Bacterial regulatory proteins, gntR family DR996_25095 PF07702 UTRA domain DR996_25100 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DR996_25105 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DR996_25105 PF02378 Phosphotransferase system, EIIC DR996_25110 PF08240 Alcohol dehydrogenase GroES-like domain DR996_25110 PF00107 Zinc-binding dehydrogenase DR996_25145 PF03222 Tryptophan/tyrosine permease family DR996_25155 PF02743 Cache domain DR996_25155 PF00672 HAMP domain DR996_25155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DR996_25185 PF01476 LysM domain DR996_25185 PF08525 Opacity-associated protein A N-terminal motif DR996_25185 PF01551 Peptidase family M23 DR996_25190 PF08447 PAS fold DR996_25190 PF08448 PAS fold DR996_25190 PF00990 Diguanylate cyclase, GGDEF domain DR996_25190 PF00563 EAL domain DR996_25195 PF00005 ABC transporter DR996_25205 PF12833 Helix-turn-helix domain DR996_25210 PF07715 TonB-dependent Receptor Plug Domain DR996_25210 PF00593 TonB dependent receptor DR996_25220 PF01032 FecCD transport family DR996_25225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_25225 PF03466 LysR substrate binding domain DR996_25230 PF07690 Major Facilitator Superfamily DR996_25245 PF00462 Glutaredoxin DR996_25250 PF00892 EamA-like transporter family DR996_25265 PF01557 Fumarylacetoacetate (FAA) hydrolase family DR996_25285 PF01810 LysE type translocator DR996_25295 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DR996_25295 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DR996_25295 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DR996_25295 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DR996_25300 PF02790 Cytochrome C oxidase subunit II, transmembrane domain DR996_25300 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DR996_25305 PF00115 Cytochrome C and Quinol oxidase polypeptide I DR996_25310 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 DR996_25315 PF00510 Cytochrome c oxidase subunit III DR996_25335 PF02628 Cytochrome oxidase assembly protein DR996_25340 PF01040 UbiA prenyltransferase family DR996_25345 PF00691 OmpA family DR996_25345 PF01389 OmpA-like transmembrane domain DR996_25350 PF00793 DAHP synthetase I family DR996_25355 PF07690 Major Facilitator Superfamily DR996_25360 PF08447 PAS fold DR996_25360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DR996_25365 PF02779 Transketolase, pyrimidine binding domain DR996_25365 PF02780 Transketolase, C-terminal domain DR996_25365 PF00456 Transketolase, thiamine diphosphate binding domain DR996_25370 PF00923 Transaldolase/Fructose-6-phosphate aldolase DR996_25385 PF00704 Glycosyl hydrolases family 18 DR996_25385 PF08329 Chitinase A, N-terminal domain DR996_25390 PF03707 Bacterial signalling protein N terminal repeat DR996_25390 PF00990 Diguanylate cyclase, GGDEF domain DR996_25390 PF00563 EAL domain DR996_25395 PF00581 Rhodanese-like domain DR996_25415 PF00899 ThiF family DR996_25420 PF00994 Probable molybdopterin binding domain DR996_25420 PF03454 MoeA C-terminal region (domain IV) DR996_25420 PF03453 MoeA N-terminal region (domain I and II) DR996_25425 PF01227 GTP cyclohydrolase I DR996_25435 PF01566 Natural resistance-associated macrophage protein DR996_25445 PF00654 Voltage gated chloride channel DR996_25460 PF00248 Aldo/keto reductase family DR996_25465 PF00072 Response regulator receiver domain DR996_25475 PF03853 YjeF-related protein N-terminus DR996_25475 PF01256 Carbohydrate kinase DR996_25480 PF00478 IMP dehydrogenase / GMP reductase domain DR996_25505 PF01979 Amidohydrolase family DR996_25515 PF07694 5TMR of 5TMR-LYT DR996_25515 PF00990 Diguanylate cyclase, GGDEF domain DR996_25520 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term DR996_25520 PF12833 Helix-turn-helix domain DR996_25525 PF00171 Aldehyde dehydrogenase family DR996_25530 PF00440 Bacterial regulatory proteins, tetR family DR996_25530 PF13977 BetI-type transcriptional repressor, C-terminal DR996_25535 PF00171 Aldehyde dehydrogenase family DR996_25540 PF00732 GMC oxidoreductase DR996_25540 PF05199 GMC oxidoreductase DR996_25545 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DR996_25550 PF00528 Binding-protein-dependent transport system inner membrane component DR996_25555 PF00005 ABC transporter DR996_25555 PF00571 CBS domain DR996_25560 PF00881 Nitroreductase family DR996_25570 PF00881 Nitroreductase family DR996_25580 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DR996_25580 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DR996_25580 PF02770 Acyl-CoA dehydrogenase, middle domain DR996_25585 PF01144 Coenzyme A transferase DR996_25595 PF02734 DAK2 domain DR996_25595 PF02733 Dak1 domain DR996_25600 PF00158 Sigma-54 interaction domain DR996_25600 PF00989 PAS fold DR996_25600 PF02954 Bacterial regulatory protein, Fis family DR996_25605 PF00158 Sigma-54 interaction domain DR996_25605 PF00989 PAS fold DR996_25605 PF02954 Bacterial regulatory protein, Fis family DR996_25610 PF16200 C-terminal region of band_7 DR996_25610 PF01145 SPFH domain / Band 7 family DR996_25645 PF03707 Bacterial signalling protein N terminal repeat DR996_25645 PF00990 Diguanylate cyclase, GGDEF domain DR996_25645 PF00563 EAL domain DR996_25660 PF04116 Fatty acid hydroxylase superfamily DR996_25670 PF02899 Phage integrase, N-terminal SAM-like domain DR996_25670 PF00589 Phage integrase family DR996_25700 PF00072 Response regulator receiver domain DR996_25700 PF00486 Transcriptional regulatory protein, C terminal DR996_25720 PF09335 SNARE associated Golgi protein DR996_25740 PF00293 NUDIX domain DR996_25745 PF00293 NUDIX domain DR996_25750 PF01177 Asp/Glu/Hydantoin racemase DR996_25755 PF01048 Phosphorylase superfamily DR996_25760 PF00563 EAL domain DR996_25760 PF00990 Diguanylate cyclase, GGDEF domain DR996_25765 PF05025 RbsD / FucU transport protein family DR996_25770 PF00005 ABC transporter DR996_25775 PF02653 Branched-chain amino acid transport system / permease component DR996_25780 PF13407 Periplasmic binding protein domain DR996_25785 PF00294 pfkB family carbohydrate kinase DR996_25790 PF00356 Bacterial regulatory proteins, lacI family DR996_25800 PF04973 Nicotinamide mononucleotide transporter DR996_25805 PF01048 Phosphorylase superfamily DR996_25820 PF01497 Periplasmic binding protein DR996_25825 PF01032 FecCD transport family DR996_25830 PF01032 FecCD transport family DR996_25835 PF00005 ABC transporter DR996_25840 PF13411 MerR HTH family regulatory protein DR996_25845 PF02311 AraC-like ligand binding domain DR996_25845 PF12833 Helix-turn-helix domain DR996_25850 PF00593 TonB dependent receptor DR996_25850 PF07715 TonB-dependent Receptor Plug Domain DR996_25895 PF02914 Bacteriophage Mu transposase DR996_25895 PF02316 Mu DNA-binding domain DR996_25895 PF09039 Mu DNA binding, I gamma subdomain DR996_25895 PF09299 Mu transposase, C-terminal DR996_25900 PF09077 Mu B transposition protein, C terminal DR996_25900 PF13401 AAA domain DR996_25980 PF08765 Mor transcription activator family DR996_26020 PF12805 FUSC-like inner membrane protein yccS DR996_26025 PF13361 UvrD-like helicase C-terminal domain DR996_26025 PF00580 UvrD/REP helicase N-terminal domain DR996_26025 PF12462 DNA helicase IV / RNA helicase N terminal DR996_26030 PF02142 MGS-like domain DR996_26035 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DR996_26040 PF00512 His Kinase A (phospho-acceptor) domain DR996_26040 PF00072 Response regulator receiver domain DR996_26040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_26040 PF00672 HAMP domain DR996_26040 PF01627 Hpt domain DR996_26060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_26060 PF00512 His Kinase A (phospho-acceptor) domain DR996_26060 PF16750 Sensor domain of 2-component histidine kinase DR996_26060 PF00672 HAMP domain DR996_26065 PF00486 Transcriptional regulatory protein, C terminal DR996_26065 PF00072 Response regulator receiver domain DR996_26070 PF00884 Sulfatase DR996_26075 PF00884 Sulfatase DR996_26080 PF00884 Sulfatase DR996_26090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_26090 PF03466 LysR substrate binding domain DR996_26095 PF00884 Sulfatase DR996_26100 PF13186 Iron-sulfur cluster-binding domain DR996_26100 PF04055 Radical SAM superfamily DR996_26105 PF07726 ATPase family associated with various cellular activities (AAA) DR996_26105 PF17863 AAA lid domain DR996_26120 PF00092 von Willebrand factor type A domain DR996_26140 PF00119 ATP synthase A chain DR996_26145 PF00137 ATP synthase subunit C DR996_26150 PF00430 ATP synthase B/B' CF(0) DR996_26155 PF00213 ATP synthase delta (OSCP) subunit DR996_26160 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DR996_26160 PF02874 ATP synthase alpha/beta family, beta-barrel domain DR996_26160 PF00306 ATP synthase alpha/beta chain, C terminal domain DR996_26165 PF00231 ATP synthase DR996_26170 PF02874 ATP synthase alpha/beta family, beta-barrel domain DR996_26170 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DR996_26175 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DR996_26175 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain DR996_26180 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DR996_26180 PF01872 RibD C-terminal domain DR996_26185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_26185 PF03466 LysR substrate binding domain DR996_26190 PF00781 Diacylglycerol kinase catalytic domain DR996_26195 PF04076 Bacterial OB fold (BOF) protein DR996_26210 PF03781 Sulfatase-modifying factor enzyme 1 DR996_26215 PF13186 Iron-sulfur cluster-binding domain DR996_26215 PF04055 Radical SAM superfamily DR996_26225 PF08774 VRR-NUC domain DR996_26225 PF18081 Fanconi anemia-associated nuclease SAP domain DR996_26240 PF01435 Peptidase family M48 DR996_26245 PF04011 LemA family DR996_26250 PF03606 C4-dicarboxylate anaerobic carrier DR996_26270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_26270 PF00072 Response regulator receiver domain DR996_26275 PF00155 Aminotransferase class I and II DR996_26280 PF01926 50S ribosome-binding GTPase DR996_26285 PF01476 LysM domain DR996_26285 PF08525 Opacity-associated protein A N-terminal motif DR996_26285 PF01551 Peptidase family M23 DR996_26305 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain DR996_26305 PF14490 Helix-hairpin-helix containing domain DR996_26305 PF13538 UvrD-like helicase C-terminal domain DR996_26310 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DR996_26325 PF00158 Sigma-54 interaction domain DR996_26325 PF02954 Bacterial regulatory protein, Fis family DR996_26330 PF00004 ATPase family associated with various cellular activities (AAA) DR996_26330 PF07724 AAA domain (Cdc48 subfamily) DR996_26330 PF17871 AAA lid domain DR996_26330 PF10431 C-terminal, D2-small domain, of ClpB protein DR996_26335 PF05638 Type VI secretion system effector, Hcp DR996_26340 PF04717 Type VI secretion system, phage-baseplate injector DR996_26365 PF00069 Protein kinase domain DR996_26400 PF01037 Lrp/AsnC ligand binding domain DR996_26475 PF00563 EAL domain DR996_26475 PF03707 Bacterial signalling protein N terminal repeat DR996_26475 PF00990 Diguanylate cyclase, GGDEF domain DR996_26480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_26480 PF09456 RcsC Alpha-Beta-Loop (ABL) DR996_26480 PF00512 His Kinase A (phospho-acceptor) domain DR996_26480 PF00072 Response regulator receiver domain DR996_26485 PF00990 Diguanylate cyclase, GGDEF domain DR996_26485 PF00563 EAL domain DR996_26485 PF13188 PAS domain DR996_26485 PF03707 Bacterial signalling protein N terminal repeat DR996_26490 PF00196 Bacterial regulatory proteins, luxR family DR996_26490 PF00072 Response regulator receiver domain DR996_26495 PF00990 Diguanylate cyclase, GGDEF domain DR996_26500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_26500 PF03466 LysR substrate binding domain DR996_26505 PF00196 Bacterial regulatory proteins, luxR family DR996_26505 PF00072 Response regulator receiver domain DR996_26510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DR996_26510 PF00672 HAMP domain DR996_26515 PF00881 Nitroreductase family DR996_26520 PF01584 CheW-like domain DR996_26520 PF00072 Response regulator receiver domain DR996_26555 PF01569 PAP2 superfamily DR996_26570 PF00893 Small Multidrug Resistance protein DR996_26575 PF00892 EamA-like transporter family DR996_26595 PF00171 Aldehyde dehydrogenase family DR996_26605 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) DR996_26610 PF00753 Metallo-beta-lactamase superfamily DR996_26620 PF13187 4Fe-4S dicluster domain DR996_26620 PF01645 Conserved region in glutamate synthase DR996_26625 PF09722 Protein of unknown function (DUF2384) DR996_26635 PF01757 Acyltransferase family DR996_26645 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DR996_26650 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DR996_26690 PF03793 PASTA domain DR996_26690 PF00069 Protein kinase domain DR996_26710 PF13677 Membrane MotB of proton-channel complex MotA/MotB DR996_26710 PF00691 OmpA family DR996_26770 PF10431 C-terminal, D2-small domain, of ClpB protein DR996_26770 PF17871 AAA lid domain DR996_26770 PF00004 ATPase family associated with various cellular activities (AAA) DR996_26770 PF07724 AAA domain (Cdc48 subfamily) DR996_26780 PF04717 Type VI secretion system, phage-baseplate injector DR996_26810 PF00149 Calcineurin-like phosphoesterase DR996_26810 PF12320 Type 5 capsule protein repressor C-terminal domain DR996_26815 PF13476 AAA domain DR996_26825 PF00704 Glycosyl hydrolases family 18 DR996_26855 PF08212 Lipocalin-like domain DR996_26865 PF07690 Major Facilitator Superfamily DR996_26875 PF03606 C4-dicarboxylate anaerobic carrier DR996_26880 PF00034 Cytochrome c DR996_26885 PF01212 Beta-eliminating lyase DR996_26895 PF07728 AAA domain (dynein-related subfamily) DR996_26895 PF17868 AAA lid domain DR996_26895 PF12592 Protein of unknown function (DUF3763) DR996_26900 PF05762 VWA domain containing CoxE-like protein DR996_26915 PF14310 Fibronectin type III-like domain DR996_26915 PF01915 Glycosyl hydrolase family 3 C-terminal domain DR996_26915 PF00933 Glycosyl hydrolase family 3 N terminal domain DR996_26920 PF03466 LysR substrate binding domain DR996_26920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_26925 PF01565 FAD binding domain DR996_26925 PF09330 D-lactate dehydrogenase, membrane binding DR996_26945 PF09154 Domain of unknown function (DUF1939) DR996_26945 PF00128 Alpha amylase, catalytic domain DR996_27000 PF17152 Periplasmic sensor domain DR996_27000 PF00990 Diguanylate cyclase, GGDEF domain DR996_27005 PF01156 Inosine-uridine preferring nucleoside hydrolase DR996_27010 PF18267 Rubredoxin NAD+ reductase C-terminal domain DR996_27010 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DR996_27010 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DR996_27010 PF07992 Pyridine nucleotide-disulphide oxidoreductase DR996_27010 PF04324 BFD-like [2Fe-2S] binding domain DR996_27015 PF13806 Rieske-like [2Fe-2S] domain DR996_27020 PF01226 Formate/nitrite transporter DR996_27025 PF10414 Sirohaem synthase dimerisation region DR996_27025 PF14824 Sirohaem biosynthesis protein central DR996_27025 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DR996_27040 PF03605 Anaerobic c4-dicarboxylate membrane transporter DR996_27055 PF11756 Nitrous oxide-stimulated promoter DR996_27060 PF01554 MatE DR996_27065 PF07494 Two component regulator propeller DR996_27065 PF12833 Helix-turn-helix domain DR996_27065 PF07495 Y_Y_Y domain DR996_27065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_27065 PF00072 Response regulator receiver domain DR996_27065 PF00512 His Kinase A (phospho-acceptor) domain DR996_27070 PF07690 Major Facilitator Superfamily DR996_27075 PF00085 Thioredoxin DR996_27080 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DR996_27080 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DR996_27110 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DR996_27110 PF00529 HlyD membrane-fusion protein of T1SS DR996_27120 PF01594 AI-2E family transporter DR996_27130 PF01238 Phosphomannose isomerase type I DR996_27135 PF07690 Major Facilitator Superfamily DR996_27140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_27140 PF07730 Histidine kinase DR996_27140 PF05231 MASE1 DR996_27145 PF00072 Response regulator receiver domain DR996_27145 PF00196 Bacterial regulatory proteins, luxR family DR996_27150 PF07690 Major Facilitator Superfamily DR996_27200 PF07992 Pyridine nucleotide-disulphide oxidoreductase DR996_27200 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DR996_27225 PF03477 ATP cone domain DR996_27225 PF13597 Anaerobic ribonucleoside-triphosphate reductase DR996_27235 PF01554 MatE DR996_27240 PF12833 Helix-turn-helix domain DR996_27245 PF00155 Aminotransferase class I and II DR996_27260 PF04076 Bacterial OB fold (BOF) protein DR996_27265 PF07685 CobB/CobQ-like glutamine amidotransferase domain DR996_27265 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DR996_27275 PF00528 Binding-protein-dependent transport system inner membrane component DR996_27280 PF00005 ABC transporter DR996_27280 PF03459 TOBE domain DR996_27290 PF00360 Phytochrome region DR996_27290 PF00563 EAL domain DR996_27290 PF01590 GAF domain DR996_27290 PF00990 Diguanylate cyclase, GGDEF domain DR996_27300 PF17158 Membrane-associated sensor, integral membrane domain DR996_27300 PF00990 Diguanylate cyclase, GGDEF domain DR996_27315 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DR996_27315 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DR996_27315 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch DR996_27320 PF02233 NAD(P) transhydrogenase beta subunit DR996_27330 PF00486 Transcriptional regulatory protein, C terminal DR996_27330 PF00072 Response regulator receiver domain DR996_27345 PF03701 Uncharacterised protein family (UPF0181) DR996_27355 PF01253 Translation initiation factor SUI1 DR996_27365 PF07478 D-ala D-ala ligase C-terminus DR996_27365 PF01820 D-ala D-ala ligase N-terminus DR996_27370 PF05036 Sporulation related domain DR996_27375 PF00583 Acetyltransferase (GNAT) family DR996_27375 PF13380 CoA binding domain DR996_27375 PF13607 Succinyl-CoA ligase like flavodoxin domain DR996_27380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_27380 PF03466 LysR substrate binding domain DR996_27385 PF04886 PT repeat DR996_27385 PF07715 TonB-dependent Receptor Plug Domain DR996_27385 PF00593 TonB dependent receptor DR996_27395 PF16363 GDP-mannose 4,6 dehydratase DR996_27400 PF00563 EAL domain DR996_27400 PF00990 Diguanylate cyclase, GGDEF domain DR996_27400 PF13426 PAS domain DR996_27400 PF05231 MASE1 DR996_27400 PF08447 PAS fold DR996_27400 PF08448 PAS fold DR996_27405 PF03746 LamB/YcsF family DR996_27410 PF02682 Carboxyltransferase domain, subdomain C and D DR996_27415 PF02626 Carboxyltransferase domain, subdomain A and B DR996_27430 PF00005 ABC transporter DR996_27435 PF13472 GDSL-like Lipase/Acylhydrolase family DR996_27440 PF07055 Enoyl reductase FAD binding domain DR996_27440 PF12241 Trans-2-enoyl-CoA reductase catalytic region DR996_27440 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase DR996_27445 PF13188 PAS domain DR996_27445 PF00990 Diguanylate cyclase, GGDEF domain DR996_27445 PF03707 Bacterial signalling protein N terminal repeat DR996_27445 PF00563 EAL domain DR996_27455 PF01556 DnaJ C terminal domain DR996_27455 PF00684 DnaJ central domain DR996_27455 PF00226 DnaJ domain DR996_27480 PF12793 Sugar transport-related sRNA regulator N-term DR996_27480 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DR996_27490 PF03061 Thioesterase superfamily DR996_27505 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) DR996_27510 PF12262 Bacterial virulence factor lipase N-terminal DR996_27525 PF02310 B12 binding domain DR996_27525 PF02965 Vitamin B12 dependent methionine synthase, activation domain DR996_27525 PF02607 B12 binding domain DR996_27525 PF02574 Homocysteine S-methyltransferase DR996_27525 PF00809 Pterin binding enzyme DR996_27540 PF03741 Integral membrane protein TerC family DR996_27545 PF00149 Calcineurin-like phosphoesterase DR996_27545 PF02872 5'-nucleotidase, C-terminal domain DR996_27550 PF11398 Protein of unknown function (DUF2813) DR996_27555 PF06496 Protein of unknown function (DUF1097) DR996_27560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_27560 PF03466 LysR substrate binding domain DR996_27570 PF01226 Formate/nitrite transporter DR996_27575 PF04264 YceI-like domain DR996_27580 PF01292 Prokaryotic cytochrome b561 DR996_27595 PF12792 CSS motif domain associated with EAL DR996_27595 PF00563 EAL domain DR996_27600 PF00271 Helicase conserved C-terminal domain DR996_27600 PF00270 DEAD/DEAH box helicase DR996_27605 PF04336 Acyl carrier protein phosphodiesterase DR996_27615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DR996_27615 PF00672 HAMP domain DR996_27615 PF12729 Four helix bundle sensory module for signal transduction DR996_27625 PF13419 Haloacid dehalogenase-like hydrolase DR996_27630 PF11849 Domain of unknown function (DUF3369) DR996_27645 PF00294 pfkB family carbohydrate kinase DR996_27650 PF01268 Formate--tetrahydrofolate ligase DR996_27655 PF00483 Nucleotidyl transferase DR996_27660 PF06483 Chitinase C DR996_27660 PF00704 Glycosyl hydrolases family 18 DR996_27665 PF12833 Helix-turn-helix domain DR996_27665 PF06719 AraC-type transcriptional regulator N-terminus DR996_27670 PF00465 Iron-containing alcohol dehydrogenase DR996_27680 PF00005 ABC transporter DR996_27685 PF00528 Binding-protein-dependent transport system inner membrane component DR996_27690 PF00497 Bacterial extracellular solute-binding proteins, family 3 DR996_27695 PF00528 Binding-protein-dependent transport system inner membrane component DR996_27700 PF00990 Diguanylate cyclase, GGDEF domain DR996_27700 PF00989 PAS fold DR996_27700 PF01590 GAF domain DR996_27700 PF00563 EAL domain DR996_27715 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DR996_27715 PF00356 Bacterial regulatory proteins, lacI family DR996_27720 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DR996_27720 PF00381 PTS HPr component phosphorylation site DR996_27725 PF00294 pfkB family carbohydrate kinase DR996_27730 PF02378 Phosphotransferase system, EIIC DR996_27730 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DR996_27755 PF00873 AcrB/AcrD/AcrF family DR996_27760 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DR996_27775 PF08669 Glycine cleavage T-protein C-terminal barrel domain DR996_27775 PF01571 Aminomethyltransferase folate-binding domain DR996_27785 PF00464 Serine hydroxymethyltransferase DR996_27790 PF01597 Glycine cleavage H-protein DR996_27795 PF02347 Glycine cleavage system P-protein DR996_27800 PF13175 AAA ATPase domain DR996_27855 PF07690 Major Facilitator Superfamily DR996_27895 PF00005 ABC transporter DR996_27895 PF00664 ABC transporter transmembrane region DR996_27970 PF07883 Cupin domain DR996_27970 PF12833 Helix-turn-helix domain DR996_27985 PF02028 BCCT, betaine/carnitine/choline family transporter DR996_27995 PF01258 Prokaryotic dksA/traR C4-type zinc finger DR996_28000 PF02492 CobW/HypB/UreG, nucleotide-binding domain DR996_28000 PF07683 Cobalamin synthesis protein cobW C-terminal domain DR996_28005 PF02492 CobW/HypB/UreG, nucleotide-binding domain DR996_28005 PF07683 Cobalamin synthesis protein cobW C-terminal domain DR996_28020 PF00378 Enoyl-CoA hydratase/isomerase DR996_28025 PF08240 Alcohol dehydrogenase GroES-like domain DR996_28025 PF00107 Zinc-binding dehydrogenase DR996_28040 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ DR996_28050 PF02525 Flavodoxin-like fold DR996_28055 PF00561 alpha/beta hydrolase fold DR996_28060 PF00440 Bacterial regulatory proteins, tetR family DR996_28070 PF12833 Helix-turn-helix domain DR996_28070 PF02311 AraC-like ligand binding domain DR996_28075 PF01594 AI-2E family transporter DR996_28110 PF01551 Peptidase family M23 DR996_28110 PF01476 LysM domain DR996_28110 PF08525 Opacity-associated protein A N-terminal motif DR996_28120 PF03466 LysR substrate binding domain DR996_28120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_28130 PF01654 Cytochrome bd terminal oxidase subunit I DR996_28135 PF02322 Cytochrome bd terminal oxidase subunit II DR996_28140 PF03334 Na+/H+ antiporter subunit DR996_28145 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) DR996_28160 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DR996_28165 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DR996_28165 PF00361 Proton-conducting membrane transporter DR996_28165 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter DR996_28165 PF13244 Domain of unknown function (DUF4040) DR996_28175 PF00582 Universal stress protein family DR996_28185 PF01614 Bacterial transcriptional regulator DR996_28185 PF09339 IclR helix-turn-helix domain DR996_28190 PF00106 short chain dehydrogenase DR996_28200 PF03222 Tryptophan/tyrosine permease family DR996_28205 PF01810 LysE type translocator DR996_28220 PF02195 ParB-like nuclease domain DR996_28230 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DR996_28245 PF00072 Response regulator receiver domain DR996_28245 PF00486 Transcriptional regulatory protein, C terminal DR996_28250 PF07963 Prokaryotic N-terminal methylation motif DR996_28250 PF14245 Type IV pilin PilA DR996_28255 PF00512 His Kinase A (phospho-acceptor) domain DR996_28255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_28255 PF00672 HAMP domain DR996_28260 PF00072 Response regulator receiver domain DR996_28260 PF00486 Transcriptional regulatory protein, C terminal DR996_28265 PF07963 Prokaryotic N-terminal methylation motif DR996_28265 PF08334 Type II secretion system (T2SS), protein G DR996_28280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_28280 PF00672 HAMP domain DR996_28280 PF00512 His Kinase A (phospho-acceptor) domain DR996_28285 PF00072 Response regulator receiver domain DR996_28285 PF00486 Transcriptional regulatory protein, C terminal DR996_28290 PF07963 Prokaryotic N-terminal methylation motif DR996_28290 PF08334 Type II secretion system (T2SS), protein G DR996_28295 PF00990 Diguanylate cyclase, GGDEF domain DR996_28295 PF03707 Bacterial signalling protein N terminal repeat DR996_28295 PF00563 EAL domain DR996_28305 PF00072 Response regulator receiver domain DR996_28305 PF00211 Adenylate and Guanylate cyclase catalytic domain DR996_28335 PF04324 BFD-like [2Fe-2S] binding domain DR996_28335 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DR996_28335 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DR996_28335 PF18267 Rubredoxin NAD+ reductase C-terminal domain DR996_28335 PF07992 Pyridine nucleotide-disulphide oxidoreductase DR996_28335 PF13806 Rieske-like [2Fe-2S] domain DR996_28340 PF00005 ABC transporter DR996_28345 PF00528 Binding-protein-dependent transport system inner membrane component DR996_28350 PF00005 ABC transporter DR996_28360 PF03861 ANTAR domain DR996_28360 PF00072 Response regulator receiver domain DR996_28365 PF01738 Dienelactone hydrolase family DR996_28370 PF02885 Glycosyl transferase family, helical bundle domain DR996_28370 PF00591 Glycosyl transferase family, a/b domain DR996_28375 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DR996_28375 PF14824 Sirohaem biosynthesis protein central DR996_28375 PF10414 Sirohaem synthase dimerisation region DR996_28380 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DR996_28380 PF00384 Molybdopterin oxidoreductase DR996_28380 PF01568 Molydopterin dinucleotide binding domain DR996_28390 PF00563 EAL domain DR996_28390 PF00990 Diguanylate cyclase, GGDEF domain DR996_28390 PF08448 PAS fold DR996_28395 PF03222 Tryptophan/tyrosine permease family DR996_28405 PF08448 PAS fold DR996_28405 PF00990 Diguanylate cyclase, GGDEF domain DR996_28415 PF01483 Proprotein convertase P-domain DR996_28415 PF00082 Subtilase family DR996_28430 PF00245 Alkaline phosphatase DR996_28445 PF00072 Response regulator receiver domain DR996_28445 PF00486 Transcriptional regulatory protein, C terminal DR996_28475 PF04314 Copper chaperone PCu(A)C DR996_28480 PF00012 Hsp70 protein DR996_28495 PF00676 Dehydrogenase E1 component DR996_28500 PF02780 Transketolase, C-terminal domain DR996_28500 PF02779 Transketolase, pyrimidine binding domain DR996_28505 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DR996_28505 PF02817 e3 binding domain DR996_28505 PF00364 Biotin-requiring enzyme DR996_28510 PF00766 Electron transfer flavoprotein FAD-binding domain DR996_28510 PF01012 Electron transfer flavoprotein domain DR996_28515 PF01012 Electron transfer flavoprotein domain DR996_28525 PF03466 LysR substrate binding domain DR996_28525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_28540 PF02424 ApbE family DR996_28545 PF00890 FAD binding domain DR996_28545 PF04205 FMN-binding domain DR996_28545 PF03358 NADPH-dependent FMN reductase DR996_28550 PF00884 Sulfatase DR996_28555 PF13417 Glutathione S-transferase, N-terminal domain DR996_28555 PF00043 Glutathione S-transferase, C-terminal domain DR996_28560 PF03466 LysR substrate binding domain DR996_28560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_28570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DR996_28575 PF00528 Binding-protein-dependent transport system inner membrane component DR996_28600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_28600 PF03466 LysR substrate binding domain DR996_28615 PF03466 LysR substrate binding domain DR996_28615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_28630 PF04151 Bacterial pre-peptidase C-terminal domain DR996_28630 PF04389 Peptidase family M28 DR996_28635 PF02868 Thermolysin metallopeptidase, alpha-helical domain DR996_28635 PF07504 Fungalysin/Thermolysin Propeptide Motif DR996_28635 PF01447 Thermolysin metallopeptidase, catalytic domain DR996_28635 PF04151 Bacterial pre-peptidase C-terminal domain DR996_28635 PF03413 Peptidase propeptide and YPEB domain DR996_28650 PF02028 BCCT, betaine/carnitine/choline family transporter DR996_28660 PF00171 Aldehyde dehydrogenase family DR996_28675 PF07992 Pyridine nucleotide-disulphide oxidoreductase DR996_28675 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DR996_28680 PF01040 UbiA prenyltransferase family DR996_28685 PF03626 Prokaryotic Cytochrome C oxidase subunit IV DR996_28690 PF00510 Cytochrome c oxidase subunit III DR996_28695 PF00115 Cytochrome C and Quinol oxidase polypeptide I DR996_28700 PF06481 COX Aromatic Rich Motif DR996_28700 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DR996_28715 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DR996_28715 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DR996_28720 PF00378 Enoyl-CoA hydratase/isomerase DR996_28725 PF00378 Enoyl-CoA hydratase/isomerase DR996_28730 PF02770 Acyl-CoA dehydrogenase, middle domain DR996_28730 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DR996_28730 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DR996_28735 PF00171 Aldehyde dehydrogenase family DR996_28740 PF00108 Thiolase, N-terminal domain DR996_28740 PF02803 Thiolase, C-terminal domain DR996_28745 PF00376 MerR family regulatory protein DR996_28745 PF09278 MerR, DNA binding DR996_28750 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DR996_28750 PF02770 Acyl-CoA dehydrogenase, middle domain DR996_28750 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DR996_28755 PF01039 Carboxyl transferase domain DR996_28760 PF00378 Enoyl-CoA hydratase/isomerase DR996_28765 PF00682 HMGL-like DR996_28780 PF00034 Cytochrome c DR996_28785 PF00115 Cytochrome C and Quinol oxidase polypeptide I DR996_28795 PF00034 Cytochrome c DR996_28795 PF13442 Cytochrome C oxidase, cbb3-type, subunit III DR996_28805 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DR996_28810 PF01734 Patatin-like phospholipase DR996_28815 PF13990 YjcZ-like protein DR996_28820 PF00350 Dynamin family DR996_28830 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DR996_28850 PF13657 HipA N-terminal domain DR996_28850 PF07804 HipA-like C-terminal domain DR996_28860 PF02463 RecF/RecN/SMC N terminal domain DR996_28890 PF00005 ABC transporter DR996_28895 PF03707 Bacterial signalling protein N terminal repeat DR996_28895 PF00563 EAL domain DR996_28895 PF13188 PAS domain DR996_28895 PF00990 Diguanylate cyclase, GGDEF domain DR996_28915 PF00271 Helicase conserved C-terminal domain DR996_28915 PF00270 DEAD/DEAH box helicase DR996_28920 PF00990 Diguanylate cyclase, GGDEF domain DR996_28920 PF03707 Bacterial signalling protein N terminal repeat DR996_28920 PF00563 EAL domain DR996_28925 PF07683 Cobalamin synthesis protein cobW C-terminal domain DR996_28925 PF02492 CobW/HypB/UreG, nucleotide-binding domain DR996_28935 PF01470 Pyroglutamyl peptidase DR996_28955 PF12843 Putative quorum-sensing-regulated virulence factor DR996_28985 PF01329 Pterin 4 alpha carbinolamine dehydratase DR996_28990 PF00351 Biopterin-dependent aromatic amino acid hydroxylase DR996_29000 PF13193 AMP-binding enzyme C-terminal domain DR996_29000 PF00501 AMP-binding enzyme DR996_29010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_29010 PF03466 LysR substrate binding domain DR996_29020 PF00892 EamA-like transporter family DR996_29045 PF07995 Glucose / Sorbosone dehydrogenase DR996_29050 PF02016 LD-carboxypeptidase N-terminal domain DR996_29050 PF17676 LD-carboxypeptidase C-terminal domain DR996_29060 PF00210 Ferritin-like domain DR996_29065 PF00672 HAMP domain DR996_29065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DR996_29065 PF17200 Single Cache domain 2 DR996_29085 PF13533 Biotin-lipoyl like DR996_29090 PF00072 Response regulator receiver domain DR996_29090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_29095 PF02321 Outer membrane efflux protein DR996_29100 PF00664 ABC transporter transmembrane region DR996_29100 PF00005 ABC transporter DR996_29105 PF00005 ABC transporter DR996_29115 PF04545 Sigma-70, region 4 DR996_29115 PF04539 Sigma-70 region 3 DR996_29115 PF04542 Sigma-70 region 2 DR996_29115 PF00140 Sigma-70 factor, region 1.2 DR996_29125 PF12704 MacB-like periplasmic core domain DR996_29125 PF02687 FtsX-like permease family DR996_29125 PF00005 ABC transporter DR996_29130 PF00005 ABC transporter DR996_29130 PF02687 FtsX-like permease family DR996_29130 PF12704 MacB-like periplasmic core domain DR996_29145 PF00990 Diguanylate cyclase, GGDEF domain DR996_29155 PF03889 Alternative ribosome-rescue factor A DR996_29160 PF00313 'Cold-shock' DNA-binding domain DR996_29180 PF00691 OmpA family DR996_29180 PF05736 OprF membrane domain DR996_29190 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DR996_29190 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DR996_29195 PF13419 Haloacid dehalogenase-like hydrolase DR996_29200 PF00472 RF-1 domain DR996_29205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DR996_29205 PF00672 HAMP domain DR996_29205 PF12729 Four helix bundle sensory module for signal transduction DR996_29210 PF00873 AcrB/AcrD/AcrF family DR996_29215 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DR996_29220 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DR996_29225 PF01546 Peptidase family M20/M25/M40 DR996_29225 PF07687 Peptidase dimerisation domain DR996_29240 PF00196 Bacterial regulatory proteins, luxR family DR996_29240 PF00072 Response regulator receiver domain DR996_29245 PF07730 Histidine kinase DR996_29245 PF00672 HAMP domain DR996_29245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_29245 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term DR996_29250 PF12838 4Fe-4S dicluster domain DR996_29250 PF13187 4Fe-4S dicluster domain DR996_29260 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DR996_29260 PF00384 Molybdopterin oxidoreductase DR996_29260 PF01568 Molydopterin dinucleotide binding domain DR996_29265 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) DR996_29270 PF03264 NapC/NirT cytochrome c family, N-terminal region DR996_29295 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) DR996_29300 PF03264 NapC/NirT cytochrome c family, N-terminal region DR996_29310 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus DR996_29310 PF00561 alpha/beta hydrolase fold DR996_29320 PF00108 Thiolase, N-terminal domain DR996_29320 PF02803 Thiolase, C-terminal domain DR996_29325 PF00106 short chain dehydrogenase DR996_29330 PF01810 LysE type translocator DR996_29340 PF02355 Protein export membrane protein DR996_29340 PF07549 SecD/SecF GG Motif DR996_29345 PF13721 SecD export protein N-terminal TM region DR996_29345 PF02355 Protein export membrane protein DR996_29345 PF07549 SecD/SecF GG Motif DR996_29375 PF01037 Lrp/AsnC ligand binding domain DR996_29390 PF00512 His Kinase A (phospho-acceptor) domain DR996_29390 PF00072 Response regulator receiver domain DR996_29390 PF09308 LuxQ, periplasmic DR996_29390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_29395 PF13407 Periplasmic binding protein domain DR996_29400 PF01541 GIY-YIG catalytic domain DR996_29405 PF04337 Protein of unknown function, DUF480 DR996_29415 PF04363 Protein of unknown function (DUF496) DR996_29420 PF01554 MatE DR996_29425 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DR996_29430 PF01627 Hpt domain DR996_29430 PF00072 Response regulator receiver domain DR996_29430 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DR996_29430 PF00672 HAMP domain DR996_29430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_29430 PF00512 His Kinase A (phospho-acceptor) domain DR996_29435 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DR996_29435 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DR996_29455 PF03466 LysR substrate binding domain DR996_29455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_29465 PF01037 Lrp/AsnC ligand binding domain DR996_29470 PF13520 Amino acid permease DR996_29475 PF00873 AcrB/AcrD/AcrF family DR996_29480 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DR996_29490 PF00392 Bacterial regulatory proteins, gntR family DR996_29490 PF00155 Aminotransferase class I and II DR996_29500 PF16527 Two-component sensor protein CpxA, periplasmic domain DR996_29500 PF00512 His Kinase A (phospho-acceptor) domain DR996_29500 PF00672 HAMP domain DR996_29500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_29505 PF00486 Transcriptional regulatory protein, C terminal DR996_29505 PF00072 Response regulator receiver domain DR996_29530 PF00529 HlyD membrane-fusion protein of T1SS DR996_29530 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DR996_29535 PF03109 ABC1 family DR996_29540 PF00571 CBS domain DR996_29540 PF01769 Divalent cation transporter DR996_29540 PF03448 MgtE intracellular N domain DR996_29545 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin DR996_29550 PF07969 Amidohydrolase family DR996_29565 PF01966 HD domain DR996_29590 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DR996_29595 PF00255 Glutathione peroxidase DR996_29610 PF01323 DSBA-like thioredoxin domain DR996_29625 PF00106 short chain dehydrogenase DR996_29635 PF00072 Response regulator receiver domain DR996_29635 PF00486 Transcriptional regulatory protein, C terminal DR996_29640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_29640 PF00672 HAMP domain DR996_29640 PF00512 His Kinase A (phospho-acceptor) domain DR996_29650 PF01219 Prokaryotic diacylglycerol kinase DR996_29655 PF00884 Sulfatase DR996_29655 PF08019 Phosphoethanolamine transferase EptA/EptB DR996_29665 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DR996_29670 PF12833 Helix-turn-helix domain DR996_29670 PF02311 AraC-like ligand binding domain DR996_29675 PF00857 Isochorismatase family DR996_29700 PF01219 Prokaryotic diacylglycerol kinase DR996_29705 PF00884 Sulfatase DR996_29705 PF08019 Phosphoethanolamine transferase EptA/EptB DR996_29715 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DR996_29720 PF12833 Helix-turn-helix domain DR996_29720 PF02311 AraC-like ligand binding domain DR996_29725 PF00857 Isochorismatase family DR996_29740 PF07690 Major Facilitator Superfamily DR996_29760 PF03466 LysR substrate binding domain DR996_29760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_29765 PF02525 Flavodoxin-like fold DR996_29770 PF02254 TrkA-N domain DR996_29770 PF00999 Sodium/hydrogen exchanger family DR996_29780 PF03466 LysR substrate binding domain DR996_29780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_29855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_29855 PF03466 LysR substrate binding domain DR996_29860 PF02525 Flavodoxin-like fold DR996_29865 PF02254 TrkA-N domain DR996_29865 PF00999 Sodium/hydrogen exchanger family DR996_29875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_29875 PF03466 LysR substrate binding domain DR996_29905 PF03466 LysR substrate binding domain DR996_29905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_29930 PF08240 Alcohol dehydrogenase GroES-like domain DR996_29930 PF00550 Phosphopantetheine attachment site DR996_29930 PF00698 Acyl transferase domain DR996_29930 PF14765 Polyketide synthase dehydratase DR996_29930 PF00109 Beta-ketoacyl synthase, N-terminal domain DR996_29930 PF16197 Ketoacyl-synthetase C-terminal extension DR996_29930 PF08659 KR domain DR996_29930 PF02801 Beta-ketoacyl synthase, C-terminal domain DR996_29935 PF00128 Alpha amylase, catalytic domain DR996_29945 PF00072 Response regulator receiver domain DR996_29945 PF01584 CheW-like domain DR996_29960 PF01243 Pyridoxamine 5'-phosphate oxidase DR996_29965 PF06228 Haem utilisation ChuX/HutX DR996_29970 PF04055 Radical SAM superfamily DR996_29975 PF03544 Gram-negative bacterial TonB protein C-terminal DR996_29980 PF01618 MotA/TolQ/ExbB proton channel family DR996_29985 PF02472 Biopolymer transport protein ExbD/TolR DR996_29995 PF01032 FecCD transport family DR996_30000 PF00005 ABC transporter DR996_30040 PF01467 Cytidylyltransferase-like DR996_30045 PF02540 NAD synthase DR996_30050 PF03476 MOSC N-terminal beta barrel domain DR996_30050 PF00111 2Fe-2S iron-sulfur cluster binding domain DR996_30050 PF03476 MOSC N-terminal beta barrel domain DR996_30050 PF00111 2Fe-2S iron-sulfur cluster binding domain DR996_30050 PF03473 MOSC domain DR996_30050 PF03473 MOSC domain DR996_30055 PF01679 Proteolipid membrane potential modulator DR996_30060 PF01979 Amidohydrolase family DR996_30065 PF05661 Protein of unknown function (DUF808) DR996_30095 PF00528 Binding-protein-dependent transport system inner membrane component DR996_30100 PF14785 Maltose transport system permease protein MalF P2 domain DR996_30100 PF00528 Binding-protein-dependent transport system inner membrane component DR996_30105 PF01547 Bacterial extracellular solute-binding protein DR996_30115 PF00005 ABC transporter DR996_30115 PF08402 TOBE domain DR996_30125 PF02397 Bacterial sugar transferase DR996_30140 PF02706 Chain length determinant protein DR996_30140 PF13807 G-rich domain on putative tyrosine kinase DR996_30140 PF13614 AAA domain DR996_30150 PF00534 Glycosyl transferases group 1 DR996_30150 PF13439 Glycosyltransferase Family 4 DR996_30180 PF00144 Beta-lactamase DR996_30190 PF16925 Tetracyclin repressor-like, C-terminal domain DR996_30190 PF00440 Bacterial regulatory proteins, tetR family DR996_30195 PF16884 N-terminal domain of oxidoreductase DR996_30195 PF00107 Zinc-binding dehydrogenase DR996_30205 PF06628 Catalase-related immune-responsive DR996_30205 PF00199 Catalase DR996_30210 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DR996_30210 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DR996_30230 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DR996_30240 PF12833 Helix-turn-helix domain DR996_30245 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DR996_30245 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DR996_30250 PF01238 Phosphomannose isomerase type I DR996_30260 PF03466 LysR substrate binding domain DR996_30260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_30265 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DR996_30265 PF00529 HlyD membrane-fusion protein of T1SS DR996_30270 PF11742 Protein of unknown function (DUF3302) DR996_30285 PF07992 Pyridine nucleotide-disulphide oxidoreductase DR996_30285 PF18113 Rubredoxin binding C-terminal domain DR996_30290 PF00301 Rubredoxin DR996_30290 PF00258 Flavodoxin DR996_30290 PF00753 Metallo-beta-lactamase superfamily DR996_30295 PF00158 Sigma-54 interaction domain DR996_30295 PF01590 GAF domain DR996_30300 PF13419 Haloacid dehalogenase-like hydrolase DR996_30310 PF00375 Sodium:dicarboxylate symporter family DR996_30315 PF07992 Pyridine nucleotide-disulphide oxidoreductase DR996_30325 PF00127 Copper binding proteins, plastocyanin/azurin family DR996_30330 PF02378 Phosphotransferase system, EIIC DR996_30335 PF00990 Diguanylate cyclase, GGDEF domain DR996_30335 PF03707 Bacterial signalling protein N terminal repeat DR996_30335 PF00563 EAL domain DR996_30345 PF00691 OmpA family DR996_30385 PF01389 OmpA-like transmembrane domain DR996_30385 PF00691 OmpA family DR996_30405 PF00005 ABC transporter DR996_30410 PF00528 Binding-protein-dependent transport system inner membrane component DR996_30415 PF00528 Binding-protein-dependent transport system inner membrane component DR996_30420 PF12849 PBP superfamily domain DR996_30425 PF00512 His Kinase A (phospho-acceptor) domain DR996_30425 PF02743 Cache domain DR996_30425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_30430 PF00072 Response regulator receiver domain DR996_30430 PF00158 Sigma-54 interaction domain DR996_30430 PF02954 Bacterial regulatory protein, Fis family DR996_30435 PF12464 Maltose acetyltransferase DR996_30435 PF14602 Hexapeptide repeat of succinyl-transferase DR996_30440 PF00529 HlyD membrane-fusion protein of T1SS DR996_30445 PF00664 ABC transporter transmembrane region DR996_30445 PF00005 ABC transporter DR996_30465 PF00196 Bacterial regulatory proteins, luxR family DR996_30470 PF00196 Bacterial regulatory proteins, luxR family DR996_30480 PF00672 HAMP domain DR996_30480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DR996_30480 PF02743 Cache domain DR996_30500 PF17863 AAA lid domain DR996_30500 PF07726 ATPase family associated with various cellular activities (AAA) DR996_30505 PF01882 Protein of unknown function DUF58 DR996_30515 PF13519 von Willebrand factor type A domain DR996_30520 PF13519 von Willebrand factor type A domain DR996_30535 PF00005 ABC transporter DR996_30540 PF00528 Binding-protein-dependent transport system inner membrane component DR996_30545 PF00528 Binding-protein-dependent transport system inner membrane component DR996_30550 PF12849 PBP superfamily domain DR996_30555 PF00672 HAMP domain DR996_30555 PF02743 Cache domain DR996_30555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DR996_30575 PF07715 TonB-dependent Receptor Plug Domain DR996_30575 PF00593 TonB dependent receptor DR996_30580 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DR996_30580 PF00326 Prolyl oligopeptidase family DR996_30585 PF00270 DEAD/DEAH box helicase DR996_30585 PF00271 Helicase conserved C-terminal domain DR996_30595 PF17969 L,D-transpeptidase C-terminal domain DR996_30595 PF01476 LysM domain DR996_30595 PF03734 L,D-transpeptidase catalytic domain DR996_30600 PF03441 FAD binding domain of DNA photolyase DR996_30600 PF00875 DNA photolyase DR996_30605 PF13411 MerR HTH family regulatory protein DR996_30610 PF08349 Protein of unknown function (DUF1722) DR996_30620 PF01048 Phosphorylase superfamily DR996_30635 PF00990 Diguanylate cyclase, GGDEF domain DR996_30645 PF11742 Protein of unknown function (DUF3302) DR996_30650 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DR996_30650 PF00529 HlyD membrane-fusion protein of T1SS DR996_30655 PF07155 ECF-type riboflavin transporter, S component DR996_30660 PF00005 ABC transporter DR996_30660 PF12558 ATP-binding cassette cobalt transporter DR996_30675 PF04074 YhcH/YjgK/YiaL DR996_30680 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DR996_30680 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DR996_30685 PF01022 Bacterial regulatory protein, arsR family DR996_30700 PF12837 4Fe-4S binding domain DR996_30700 PF12801 4Fe-4S binding domain DR996_30705 PF12838 4Fe-4S dicluster domain DR996_30705 PF12800 4Fe-4S binding domain DR996_30710 PF13302 Acetyltransferase (GNAT) domain DR996_30725 PF07238 PilZ domain DR996_30725 PF12945 Flagellar protein YcgR DR996_30730 PF13609 Gram-negative porin DR996_30735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DR996_30735 PF00672 HAMP domain DR996_30735 PF12729 Four helix bundle sensory module for signal transduction DR996_30740 PF13654 AAA domain DR996_30740 PF05362 Lon protease (S16) C-terminal proteolytic domain DR996_30750 PF00005 ABC transporter DR996_30750 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DR996_30755 PF00326 Prolyl oligopeptidase family DR996_30755 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DR996_30760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_30760 PF03466 LysR substrate binding domain DR996_30765 PF02652 L-lactate permease DR996_30770 PF01070 FMN-dependent dehydrogenase DR996_30785 PF00924 Mechanosensitive ion channel DR996_30790 PF01609 Transposase DDE domain DR996_30790 PF14706 Transposase DNA-binding DR996_30790 PF02281 Transposase Tn5 dimerisation domain DR996_30795 PF00194 Eukaryotic-type carbonic anhydrase DR996_30805 PF08240 Alcohol dehydrogenase GroES-like domain DR996_30805 PF00107 Zinc-binding dehydrogenase DR996_30840 PF00266 Aminotransferase class-V DR996_30845 PF08448 PAS fold DR996_30845 PF13426 PAS domain DR996_30845 PF00512 His Kinase A (phospho-acceptor) domain DR996_30845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_30845 PF00072 Response regulator receiver domain DR996_30850 PF00072 Response regulator receiver domain DR996_30850 PF00486 Transcriptional regulatory protein, C terminal DR996_30870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_30870 PF03466 LysR substrate binding domain DR996_30875 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DR996_30930 PF00577 Outer membrane usher protein DR996_30930 PF13954 PapC N-terminal domain DR996_30930 PF13953 PapC C-terminal domain DR996_30935 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DR996_30935 PF02753 Pili assembly chaperone PapD, C-terminal domain DR996_30940 PF00419 Fimbrial protein DR996_30950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_30950 PF03466 LysR substrate binding domain DR996_30960 PF00990 Diguanylate cyclase, GGDEF domain DR996_30960 PF08448 PAS fold DR996_30960 PF00563 EAL domain DR996_30970 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DR996_30970 PF18269 T3SS EscN ATPase C-terminal domain DR996_30980 PF01706 FliG C-terminal domain DR996_30980 PF14841 FliG middle domain DR996_30980 PF14842 FliG N-terminal domain DR996_30985 PF08345 Flagellar M-ring protein C-terminal DR996_30985 PF01514 Secretory protein of YscJ/FliF family DR996_30990 PF02049 Flagellar hook-basal body complex protein FliE DR996_30995 PF00158 Sigma-54 interaction domain DR996_30995 PF00072 Response regulator receiver domain DR996_30995 PF02954 Bacterial regulatory protein, Fis family DR996_31010 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DR996_31015 PF00813 FliP family DR996_31020 PF01313 Bacterial export proteins, family 3 DR996_31025 PF01311 Bacterial export proteins, family 1 DR996_31030 PF01312 FlhB HrpN YscU SpaS Family DR996_31035 PF00771 FHIPEP family DR996_31045 PF00669 Bacterial flagellin N-terminal helical region DR996_31045 PF00700 Bacterial flagellin C-terminal helical region DR996_31055 PF07195 Flagellar hook-associated protein 2 C-terminus DR996_31055 PF07196 Flagellin hook IN motif DR996_31055 PF02465 Flagellar hook-associated protein 2 N-terminus DR996_31060 PF02561 Flagellar protein FliS DR996_31075 PF03748 Flagellar basal body-associated protein FliL DR996_31080 PF04542 Sigma-70 region 2 DR996_31080 PF04545 Sigma-70, region 4 DR996_31105 PF08241 Methyltransferase domain DR996_31120 PF18500 CadC C-terminal domain 1 DR996_31120 PF00486 Transcriptional regulatory protein, C terminal DR996_31125 PF03471 Transporter associated domain DR996_31125 PF03741 Integral membrane protein TerC family DR996_31145 PF03466 LysR substrate binding domain DR996_31145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_31150 PF01070 FMN-dependent dehydrogenase DR996_31170 PF00700 Bacterial flagellin C-terminal helical region DR996_31170 PF00669 Bacterial flagellin N-terminal helical region DR996_31175 PF00460 Flagella basal body rod protein DR996_31175 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DR996_31180 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DR996_31180 PF10135 Rod binding protein DR996_31185 PF02119 Flagellar P-ring protein DR996_31190 PF02107 Flagellar L-ring protein DR996_31195 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DR996_31195 PF00460 Flagella basal body rod protein DR996_31200 PF00460 Flagella basal body rod protein DR996_31200 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DR996_31205 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DR996_31205 PF07559 Flagellar basal body protein FlaE DR996_31205 PF00460 Flagella basal body rod protein DR996_31210 PF03963 Flagellar hook capping protein - N-terminal region DR996_31210 PF13861 FlgD Tudor-like domain DR996_31210 PF13860 FlgD Ig-like domain DR996_31215 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DR996_31215 PF00460 Flagella basal body rod protein DR996_31220 PF00460 Flagella basal body rod protein DR996_31240 PF01464 Transglycosylase SLT domain DR996_31240 PF01476 LysM domain DR996_31265 PF03313 Serine dehydratase alpha chain DR996_31265 PF03315 Serine dehydratase beta chain DR996_31270 PF00854 POT family DR996_31275 PF01566 Natural resistance-associated macrophage protein DR996_31285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_31285 PF03466 LysR substrate binding domain DR996_31295 PF03466 LysR substrate binding domain DR996_31295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_31300 PF00691 OmpA family DR996_31300 PF01389 OmpA-like transmembrane domain DR996_31305 PF18027 Cytosolic carboxypeptidase N-terminal domain DR996_31305 PF00246 Zinc carboxypeptidase DR996_31310 PF01266 FAD dependent oxidoreductase DR996_31325 PF04393 Protein of unknown function (DUF535) DR996_31365 PF00266 Aminotransferase class-V DR996_31375 PF13419 Haloacid dehalogenase-like hydrolase DR996_31380 PF00356 Bacterial regulatory proteins, lacI family DR996_31385 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DR996_31395 PF03611 PTS system sugar-specific permease component DR996_31405 PF00082 Subtilase family DR996_31405 PF05922 Peptidase inhibitor I9 DR996_31410 PF00657 GDSL-like Lipase/Acylhydrolase DR996_31415 PF01380 SIS domain DR996_31415 PF01418 Helix-turn-helix domain, rpiR family DR996_31420 PF00251 Glycosyl hydrolases family 32 N-terminal domain DR996_31420 PF08244 Glycosyl hydrolases family 32 C terminal DR996_31425 PF00367 phosphotransferase system, EIIB DR996_31425 PF02378 Phosphotransferase system, EIIC DR996_31430 PF02502 Ribose/Galactose Isomerase DR996_31435 PF00834 Ribulose-phosphate 3 epimerase family DR996_31440 PF00924 Mechanosensitive ion channel DR996_31440 PF12795 Mechanosensitive ion channel porin domain DR996_31440 PF12794 Mechanosensitive ion channel inner membrane domain 1 DR996_31475 PF13419 Haloacid dehalogenase-like hydrolase DR996_31480 PF03466 LysR substrate binding domain DR996_31480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_31485 PF01425 Amidase DR996_31490 PF02785 Biotin carboxylase C-terminal domain DR996_31490 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DR996_31490 PF00289 Biotin carboxylase, N-terminal domain DR996_31505 PF00005 ABC transporter DR996_31505 PF08402 TOBE domain DR996_31520 PF00990 Diguanylate cyclase, GGDEF domain DR996_31535 PF05230 MASE2 domain DR996_31535 PF00990 Diguanylate cyclase, GGDEF domain DR996_31555 PF00483 Nucleotidyl transferase DR996_31560 PF07662 Na+ dependent nucleoside transporter C-terminus DR996_31560 PF07670 Nucleoside recognition DR996_31560 PF01773 Na+ dependent nucleoside transporter N-terminus DR996_31580 PF01212 Beta-eliminating lyase DR996_31585 PF03116 NQR2, RnfD, RnfE family DR996_31595 PF01266 FAD dependent oxidoreductase DR996_31615 PF05525 Branched-chain amino acid transport protein DR996_31620 PF00990 Diguanylate cyclase, GGDEF domain DR996_31620 PF08448 PAS fold DR996_31625 PF00072 Response regulator receiver domain DR996_31625 PF02954 Bacterial regulatory protein, Fis family DR996_31625 PF00158 Sigma-54 interaction domain DR996_31630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_31630 PF02743 Cache domain DR996_31630 PF00512 His Kinase A (phospho-acceptor) domain DR996_31635 PF00232 Glycosyl hydrolase family 1 DR996_31660 PF03466 LysR substrate binding domain DR996_31660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_31670 PF12706 Beta-lactamase superfamily domain DR996_31685 PF08443 RimK-like ATP-grasp domain DR996_31685 PF18030 RimK PreATP-grasp domain DR996_31690 PF08443 RimK-like ATP-grasp domain DR996_31690 PF18030 RimK PreATP-grasp domain DR996_31695 PF00753 Metallo-beta-lactamase superfamily DR996_31700 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DR996_31700 PF17810 Arginine decarboxylase helical bundle domain DR996_31700 PF17944 Arginine decarboxylase C-terminal helical extension DR996_31705 PF00491 Arginase family DR996_31710 PF07690 Major Facilitator Superfamily DR996_31715 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DR996_31715 PF00326 Prolyl oligopeptidase family DR996_31730 PF00950 ABC 3 transport family DR996_31735 PF00005 ABC transporter DR996_31740 PF01297 Zinc-uptake complex component A periplasmic DR996_31785 PF02472 Biopolymer transport protein ExbD/TolR DR996_31790 PF01618 MotA/TolQ/ExbB proton channel family DR996_31795 PF01618 MotA/TolQ/ExbB proton channel family DR996_31805 PF07715 TonB-dependent Receptor Plug Domain DR996_31805 PF00593 TonB dependent receptor DR996_31810 PF00672 HAMP domain DR996_31810 PF16750 Sensor domain of 2-component histidine kinase DR996_31810 PF00512 His Kinase A (phospho-acceptor) domain DR996_31810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_31815 PF00486 Transcriptional regulatory protein, C terminal DR996_31815 PF00072 Response regulator receiver domain DR996_31820 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DR996_31820 PF00056 lactate/malate dehydrogenase, NAD binding domain DR996_31825 PF03009 Glycerophosphoryl diester phosphodiesterase family DR996_31835 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DR996_31835 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DR996_31840 PF10928 Protein of unknown function (DUF2810) DR996_31895 PF04013 Putative SAM-dependent RNA methyltransferase DR996_31900 PF01523 Putative modulator of DNA gyrase DR996_31905 PF01523 Putative modulator of DNA gyrase DR996_31910 PF08543 Phosphomethylpyrimidine kinase DR996_31915 PF00005 ABC transporter DR996_31920 PF00528 Binding-protein-dependent transport system inner membrane component DR996_31925 PF09084 NMT1/THI5 like DR996_31930 PF03070 TENA/THI-4/PQQC family DR996_31935 PF02110 Hydroxyethylthiazole kinase family DR996_31940 PF02581 Thiamine monophosphate synthase DR996_31945 PF01569 PAP2 superfamily DR996_31955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DR996_31955 PF00512 His Kinase A (phospho-acceptor) domain DR996_31955 PF18719 ArlS sensor domain DR996_31960 PF01568 Molydopterin dinucleotide binding domain DR996_31960 PF18364 Molybdopterin oxidoreductase N-terminal domain DR996_31960 PF00384 Molybdopterin oxidoreductase DR996_31965 PF03264 NapC/NirT cytochrome c family, N-terminal region DR996_31995 PF00583 Acetyltransferase (GNAT) family DR996_32040 PF00392 Bacterial regulatory proteins, gntR family DR996_32040 PF00155 Aminotransferase class I and II DR996_32045 PF02595 Glycerate kinase family DR996_32050 PF13556 PucR C-terminal helix-turn-helix domain DR996_32050 PF05651 Putative sugar diacid recognition DR996_32050 PF17853 GGDEF-like domain DR996_32060 PF01979 Amidohydrolase family DR996_32085 PF13419 Haloacid dehalogenase-like hydrolase DR996_32095 PF01773 Na+ dependent nucleoside transporter N-terminus DR996_32095 PF07662 Na+ dependent nucleoside transporter C-terminus DR996_32095 PF07670 Nucleoside recognition DR996_32105 PF03466 LysR substrate binding domain DR996_32105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_32125 PF03974 Ecotin DR996_32130 PF03466 LysR substrate binding domain DR996_32130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_32145 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DR996_32160 PF01204 Trehalase DR996_32170 PF12706 Beta-lactamase superfamily domain DR996_32180 PF07690 Major Facilitator Superfamily DR996_32185 PF13533 Biotin-lipoyl like DR996_32195 PF16868 NMT1-like family DR996_32200 PF03922 OmpW family DR996_32205 PF13599 Pentapeptide repeats (9 copies) DR996_32220 PF00893 Small Multidrug Resistance protein DR996_32230 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading DR996_32230 PF18416 N-acetylglucosamine binding protein domain 2 DR996_32235 PF01037 Lrp/AsnC ligand binding domain DR996_32240 PF01810 LysE type translocator DR996_32245 PF00326 Prolyl oligopeptidase family DR996_32250 PF08021 Siderophore-interacting FAD-binding domain DR996_32250 PF04954 Siderophore-interacting protein DR996_32255 PF03466 LysR substrate binding domain DR996_32255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_32265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DR996_32265 PF03466 LysR substrate binding domain DR996_32280 PF00797 N-acetyltransferase DR996_32285 PF08240 Alcohol dehydrogenase GroES-like domain DR996_32285 PF00107 Zinc-binding dehydrogenase DR996_32290 PF00756 Putative esterase DR996_32300 PF05656 Protein of unknown function (DUF805) DR996_32325 PF00194 Eukaryotic-type carbonic anhydrase DR996_32335 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) DR996_32350 PF17358 Family of unknown function (DUF5384) DR996_32355 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB DR996_32360 PF01381 Helix-turn-helix DR996_32485 PF00216 Bacterial DNA-binding protein DR996_32525 PF00437 Type II/IV secretion system protein DR996_32590 PF10881 Protein of unknown function (DUF2726) DR996_32620 PF01131 DNA topoisomerase DR996_32620 PF01751 Toprim domain DR996_32655 PF01848 Hok/gef family DR996_32680 PF01320 Colicin immunity protein / pyocin immunity protein DR996_32685 PF11570 Coiled-coil receptor-binding R-domain of colicin E2 DR996_32685 PF03515 Colicin-like bacteriocin tRNase domain DR996_32690 PF00816 H-NS histone family DR996_32695 PF13700 Domain of unknown function (DUF4158) DR996_32695 PF01526 Tn3 transposase DDE domain DR996_32700 PF02796 Helix-turn-helix domain of resolvase DR996_32700 PF00239 Resolvase, N terminal domain DR996_32750 PF00691 OmpA family DR996_32800 PF01797 Transposase IS200 like DR996_32820 PF02281 Transposase Tn5 dimerisation domain DR996_32820 PF14706 Transposase DNA-binding DR996_32820 PF01609 Transposase DDE domain DR996_32845 PF02796 Helix-turn-helix domain of resolvase DR996_32845 PF00239 Resolvase, N terminal domain DR996_32920 PF04002 RadC-like JAB domain DR996_32960 PF06122 Conjugative relaxosome accessory transposon protein DR996_32990 PF13700 Domain of unknown function (DUF4158) DR996_32990 PF01526 Tn3 transposase DDE domain DR996_33010 PF02796 Helix-turn-helix domain of resolvase DR996_33010 PF00239 Resolvase, N terminal domain DR996_33035 PF17728 BsuBI/PstI restriction endonuclease HTH domain DR996_33035 PF06616 BsuBI/PstI restriction endonuclease domain DR996_33040 PF07669 Eco57I restriction-modification methylase DR996_33045 PF04002 RadC-like JAB domain DR996_33060 PF13737 Transposase DDE domain DR996_33105 PF00440 Bacterial regulatory proteins, tetR family DR996_33110 PF07690 Major Facilitator Superfamily DR996_33115 PF00440 Bacterial regulatory proteins, tetR family DR996_33115 PF02909 Tetracyclin repressor-like, C-terminal domain DR996_33140 PF00679 Elongation factor G C-terminus DR996_33140 PF14492 Elongation Factor G, domain II DR996_33140 PF03764 Elongation factor G, domain IV DR996_33140 PF00009 Elongation factor Tu GTP binding domain DR996_33170 PF00809 Pterin binding enzyme DR996_33190 PF01076 Plasmid recombination enzyme DR996_33200 PF08378 Nuclease-related domain DR996_33225 PF00589 Phage integrase family DR996_33225 PF02899 Phage integrase, N-terminal SAM-like domain DR996_33385 PF01206 Sulfurtransferase TusA DR996_33420 PF00111 2Fe-2S iron-sulfur cluster binding domain DR996_33480 PF07728 AAA domain (dynein-related subfamily) DR996_33480 PF08406 CbbQ/NirQ/NorQ C-terminal DR996_33525 PF12477 Sex factor F TraW protein N terminal DR996_33530 PF10502 Signal peptidase, peptidase S26 DR996_33545 PF13098 Thioredoxin-like domain DR996_33545 PF10411 Disulfide bond isomerase protein N-terminus DR996_33575 PF03958 Bacterial type II/III secretion system short domain DR996_33575 PF00263 Bacterial type II and III secretion system protein DR996_33630 PF01131 DNA topoisomerase DR996_33630 PF01751 Toprim domain DR996_33730 PF02195 ParB-like nuclease domain DR996_33730 PF08535 KorB domain DR996_33730 PF06613 KorB C-terminal beta-barrel domain DR996_33735 PF13614 AAA domain DR996_33770 PF00186 Dihydrofolate reductase DR996_33785 PF13599 Pentapeptide repeats (9 copies) DR996_33860 PF05593 RHS Repeat DR996_33860 PF03527 RHS protein DR996_33940 PF00565 Staphylococcal nuclease homologue DR996_33960 PF01343 Peptidase family S49 DR996_34045 PF13693 Winged helix-turn-helix DNA-binding DR996_34095 PF01131 DNA topoisomerase DR996_34095 PF01751 Toprim domain DR996_34130 PF13362 Toprim domain DR996_34130 PF18818 Metallopeptidase superfamily domain DR996_34130 PF08401 Domain of unknown function (DUF1738) DR996_34160 PF01848 Hok/gef family DR996_34185 PF02384 N-6 DNA Methylase DR996_34185 PF07669 Eco57I restriction-modification methylase DR996_34190 PF13737 Transposase DDE domain DR996_34215 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system DR996_34240 PF13614 AAA domain DR996_34245 PF04754 Putative transposase, YhgA-like DR996_34260 PF13700 Domain of unknown function (DUF4158) DR996_34260 PF01526 Tn3 transposase DDE domain DR996_34265 PF00239 Resolvase, N terminal domain DR996_34265 PF02796 Helix-turn-helix domain of resolvase DR996_34285 PF04956 TrbC/VIRB2 family DR996_34290 PF05101 Type IV secretory pathway, VirB3-like protein DR996_34295 PF03135 CagE, TrbE, VirB family, component of type IV transporter system DR996_34305 PF00437 Type II/IV secretion system protein DR996_34320 PF03524 Conjugal transfer protein DR996_34330 PF03743 Bacterial conjugation TrbI-like protein DR996_34355 PF00437 Type II/IV secretion system protein DR996_34395 PF01848 Hok/gef family DR996_34415 PF10502 Signal peptidase, peptidase S26 DR996_34420 PF01464 Transglycosylase SLT domain