locus-tag class description M5598_00005 PF00308 Bacterial dnaA protein M5598_00005 PF08299 Bacterial dnaA protein helix-turn-helix M5598_00005 PF11638 DnaA N-terminal domain M5598_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain M5598_00010 PF02767 DNA polymerase III beta subunit, central domain M5598_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain M5598_00015 PF02463 RecF/RecN/SMC N terminal domain M5598_00020 PF01751 Toprim domain M5598_00020 PF18053 DNA gyrase B subunit insert domain M5598_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_00020 PF00204 DNA gyrase B M5598_00020 PF00986 DNA gyrase B subunit, carboxyl terminus M5598_00030 PF00011 Hsp20/alpha crystallin family M5598_00035 PF00155 Aminotransferase class I and II M5598_00040 PF00128 Alpha amylase, catalytic domain M5598_00045 PF05746 DALR anticodon binding domain M5598_00045 PF02092 Glycyl-tRNA synthetase beta subunit M5598_00050 PF02091 Glycyl-tRNA synthetase alpha subunit M5598_00055 PF01169 Uncharacterized protein family UPF0016 M5598_00065 PF01206 Sulfurtransferase TusA M5598_00075 PF03466 LysR substrate binding domain M5598_00075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_00080 PF08240 Alcohol dehydrogenase GroES-like domain M5598_00080 PF00107 Zinc-binding dehydrogenase M5598_00085 PF02803 Thiolase, C-terminal domain M5598_00085 PF00108 Thiolase, N-terminal domain M5598_00090 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M5598_00090 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M5598_00090 PF00378 Enoyl-CoA hydratase/isomerase M5598_00095 PF01205 Uncharacterized protein family UPF0029 M5598_00095 PF09186 Domain of unknown function (DUF1949) M5598_00100 PF02386 Cation transport protein M5598_00105 PF12724 Flavodoxin domain M5598_00165 PF02537 CrcB-like protein, Camphor Resistance (CrcB) M5598_00170 PF13667 ThiC-associated domain M5598_00170 PF01964 Radical SAM ThiC family M5598_00175 PF02581 Thiamine monophosphate synthase M5598_00180 PF00899 ThiF family M5598_00185 PF02597 ThiS family M5598_00190 PF05690 Thiazole biosynthesis protein ThiG M5598_00195 PF04055 Radical SAM superfamily M5598_00195 PF06968 Biotin and Thiamin Synthesis associated domain M5598_00200 PF00557 Metallopeptidase family M24 M5598_00200 PF01321 Creatinase/Prolidase N-terminal domain M5598_00200 PF01321 Creatinase/Prolidase N-terminal domain M5598_00200 PF00557 Metallopeptidase family M24 M5598_00205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_00205 PF03466 LysR substrate binding domain M5598_00210 PF07690 Major Facilitator Superfamily M5598_00230 PF05114 Protein of unknown function (DUF692) M5598_00240 PF00580 UvrD/REP helicase N-terminal domain M5598_00240 PF13361 UvrD-like helicase C-terminal domain M5598_00250 PF01810 LysE type translocator M5598_00260 PF00892 EamA-like transporter family M5598_00265 PF09382 RQC domain M5598_00265 PF00570 HRDC domain M5598_00265 PF00271 Helicase conserved C-terminal domain M5598_00265 PF16124 RecQ zinc-binding M5598_00265 PF00270 DEAD/DEAH box helicase M5598_00275 PF02592 Putative vitamin uptake transporter M5598_00280 PF02541 Ppx/GppA phosphatase family M5598_00285 PF00271 Helicase conserved C-terminal domain M5598_00285 PF00270 DEAD/DEAH box helicase M5598_00290 PF00085 Thioredoxin M5598_00295 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M5598_00295 PF07497 Rho termination factor, RNA-binding domain M5598_00295 PF07498 Rho termination factor, N-terminal domain M5598_00305 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase M5598_00310 PF00111 2Fe-2S iron-sulfur cluster binding domain M5598_00315 PF00175 Oxidoreductase NAD-binding domain M5598_00350 PF07219 HemY protein N-terminus M5598_00355 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase M5598_00360 PF02602 Uroporphyrinogen-III synthase HemD M5598_00365 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain M5598_00365 PF03900 Porphobilinogen deaminase, C-terminal domain M5598_00370 PF12633 Adenylate cyclase NT domain M5598_00370 PF01295 Adenylate cyclase, class-I M5598_00375 PF01491 Frataxin-like domain M5598_00385 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain M5598_00385 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain M5598_00390 PF01678 Diaminopimelate epimerase M5598_00400 PF00589 Phage integrase family M5598_00400 PF02899 Phage integrase, N-terminal SAM-like domain M5598_00405 PF13419 Haloacid dehalogenase-like hydrolase M5598_00410 PF08495 FIST N domain M5598_00410 PF10442 FIST C domain M5598_00410 PF00990 Diguanylate cyclase, GGDEF domain M5598_00410 PF00563 EAL domain M5598_00415 PF03942 DTW domain M5598_00435 PF12146 Serine aminopeptidase, S33 M5598_00440 PF01810 LysE type translocator M5598_00445 PF08668 HDOD domain M5598_00445 PF00563 EAL domain M5598_00450 PF01022 Bacterial regulatory protein, arsR family M5598_00455 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M5598_00455 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M5598_00505 PF01914 MarC family integral membrane protein M5598_00520 PF02881 SRP54-type protein, helical bundle domain M5598_00520 PF00448 SRP54-type protein, GTPase domain M5598_00525 PF00005 ABC transporter M5598_00530 PF18075 FtsX extracellular domain M5598_00535 PF00140 Sigma-70 factor, region 1.2 M5598_00535 PF04542 Sigma-70 region 2 M5598_00535 PF04545 Sigma-70, region 4 M5598_00540 PF00581 Rhodanese-like domain M5598_00545 PF01694 Rhomboid family M5598_00545 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease M5598_00550 PF03748 Flagellar basal body-associated protein FliL M5598_00555 PF04345 Chorismate lyase M5598_00560 PF01040 UbiA prenyltransferase family M5598_00565 PF01553 Acyltransferase M5598_00570 PF01726 LexA DNA binding domain M5598_00570 PF00717 Peptidase S24-like M5598_00575 PF04072 Leucine carboxyl methyltransferase M5598_00580 PF01554 MatE M5598_00585 PF07992 Pyridine nucleotide-disulphide oxidoreductase M5598_00585 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M5598_00590 PF00440 Bacterial regulatory proteins, tetR family M5598_00600 PF05958 tRNA (Uracil-5-)-methyltransferase M5598_00605 PF07715 TonB-dependent Receptor Plug Domain M5598_00605 PF00593 TonB dependent receptor M5598_00615 PF01177 Asp/Glu/Hydantoin racemase M5598_00680 PF13091 PLD-like domain M5598_00690 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain M5598_00690 PF01565 FAD binding domain M5598_00695 PF08279 HTH domain M5598_00695 PF03099 Biotin/lipoate A/B protein ligase family M5598_00695 PF02237 Biotin protein ligase C terminal domain M5598_00700 PF00485 Phosphoribulokinase / Uridine kinase family M5598_00725 PF00009 Elongation factor Tu GTP binding domain M5598_00725 PF03144 Elongation factor Tu domain 2 M5598_00725 PF03143 Elongation factor Tu C-terminal domain M5598_00730 PF00584 SecE/Sec61-gamma subunits of protein translocation complex M5598_00735 PF02357 Transcription termination factor nusG M5598_00735 PF00467 KOW motif M5598_00740 PF03946 Ribosomal protein L11, N-terminal domain M5598_00740 PF00298 Ribosomal protein L11, RNA binding domain M5598_00745 PF00687 Ribosomal protein L1p/L10e family M5598_00750 PF00466 Ribosomal protein L10 M5598_00755 PF00542 Ribosomal protein L7/L12 C-terminal domain M5598_00755 PF16320 Ribosomal protein L7/L12 dimerisation domain M5598_00760 PF04563 RNA polymerase beta subunit M5598_00760 PF04561 RNA polymerase Rpb2, domain 2 M5598_00760 PF04565 RNA polymerase Rpb2, domain 3 M5598_00760 PF10385 RNA polymerase beta subunit external 1 domain M5598_00760 PF04560 RNA polymerase Rpb2, domain 7 M5598_00760 PF00562 RNA polymerase Rpb2, domain 6 M5598_00765 PF00623 RNA polymerase Rpb1, domain 2 M5598_00765 PF04997 RNA polymerase Rpb1, domain 1 M5598_00765 PF04998 RNA polymerase Rpb1, domain 5 M5598_00765 PF05000 RNA polymerase Rpb1, domain 4 M5598_00765 PF04983 RNA polymerase Rpb1, domain 3 M5598_00770 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ M5598_00775 PF09297 NADH pyrophosphatase zinc ribbon domain M5598_00775 PF00293 NUDIX domain M5598_00790 PF01208 Uroporphyrinogen decarboxylase (URO-D) M5598_00795 PF03167 Uracil DNA glycosylase superfamily M5598_00800 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M5598_00805 PF04222 Protein of unknown function (DUF416) M5598_00810 PF00571 CBS domain M5598_00810 PF01595 Cyclin M transmembrane N-terminal domain M5598_00815 PF00216 Bacterial DNA-binding protein M5598_00825 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain M5598_00825 PF02844 Phosphoribosylglycinamide synthetase, N domain M5598_00825 PF02843 Phosphoribosylglycinamide synthetase, C domain M5598_00830 PF01808 AICARFT/IMPCHase bienzyme M5598_00830 PF02142 MGS-like domain M5598_00835 PF13411 MerR HTH family regulatory protein M5598_00845 PF18500 CadC C-terminal domain 1 M5598_00845 PF00486 Transcriptional regulatory protein, C terminal M5598_00850 PF13520 Amino acid permease M5598_00855 PF01276 Orn/Lys/Arg decarboxylase, major domain M5598_00855 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain M5598_00855 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain M5598_00910 PF00990 Diguanylate cyclase, GGDEF domain M5598_00910 PF05230 MASE2 domain M5598_00915 PF12848 ABC transporter M5598_00915 PF00005 ABC transporter M5598_00920 PF07690 Major Facilitator Superfamily M5598_00925 PF02954 Bacterial regulatory protein, Fis family M5598_00930 PF01207 Dihydrouridine synthase (Dus) M5598_00940 PF02785 Biotin carboxylase C-terminal domain M5598_00940 PF00289 Biotin carboxylase, N-terminal domain M5598_00940 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M5598_00945 PF00364 Biotin-requiring enzyme M5598_00950 PF01220 Dehydroquinase class II M5598_00955 PF16177 Acetyl-coenzyme A synthetase N-terminus M5598_00955 PF00501 AMP-binding enzyme M5598_00955 PF13193 AMP-binding enzyme C-terminal domain M5598_00970 PF12832 MFS_1 like family M5598_00975 PF09308 LuxQ, periplasmic M5598_00975 PF00512 His Kinase A (phospho-acceptor) domain M5598_00975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_00975 PF00072 Response regulator receiver domain M5598_00980 PF00206 Lyase M5598_00980 PF10415 Fumarase C C-terminus M5598_00995 PF00474 Sodium:solute symporter family M5598_01005 PF00999 Sodium/hydrogen exchanger family M5598_01005 PF02080 TrkA-C domain M5598_01005 PF03471 Transporter associated domain M5598_01010 PF00072 Response regulator receiver domain M5598_01010 PF00196 Bacterial regulatory proteins, luxR family M5598_01015 PF02683 Cytochrome C biogenesis protein transmembrane region M5598_01015 PF11412 Disulphide bond corrector protein DsbC M5598_01020 PF03605 Anaerobic c4-dicarboxylate membrane transporter M5598_01025 PF10415 Fumarase C C-terminus M5598_01025 PF00206 Lyase M5598_01030 PF04186 FxsA cytoplasmic membrane protein M5598_01035 PF00588 SpoU rRNA Methylase family M5598_01040 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain M5598_01040 PF02777 Iron/manganese superoxide dismutases, C-terminal domain M5598_01045 PF16527 Two-component sensor protein CpxA, periplasmic domain M5598_01045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_01045 PF00512 His Kinase A (phospho-acceptor) domain M5598_01045 PF00672 HAMP domain M5598_01050 PF00072 Response regulator receiver domain M5598_01050 PF00486 Transcriptional regulatory protein, C terminal M5598_01055 PF07813 LTXXQ motif family protein M5598_01060 PF01545 Cation efflux family M5598_01060 PF16916 Dimerisation domain of Zinc Transporter M5598_01065 PF00365 Phosphofructokinase M5598_01070 PF01554 MatE M5598_01075 PF00166 Chaperonin 10 Kd subunit M5598_01080 PF00118 TCP-1/cpn60 chaperonin family M5598_01090 PF02308 MgtC family M5598_01095 PF00842 Alanine racemase, C-terminal domain M5598_01095 PF01168 Alanine racemase, N-terminal domain M5598_01100 PF04055 Radical SAM superfamily M5598_01105 PF09285 Elongation factor P, C-terminal M5598_01105 PF08207 Elongation factor P (EF-P) KOW-like domain M5598_01105 PF01132 Elongation factor P (EF-P) OB domain M5598_01115 PF02313 Fumarate reductase subunit D M5598_01120 PF02300 Fumarate reductase subunit C M5598_01125 PF13085 2Fe-2S iron-sulfur cluster binding domain M5598_01125 PF13183 4Fe-4S dicluster domain M5598_01130 PF00890 FAD binding domain M5598_01130 PF02910 Fumarate reductase flavoprotein C-term M5598_01135 PF00152 tRNA synthetases class II (D, K and N) M5598_01145 PF08360 QacR-like protein, C-terminal region M5598_01145 PF00440 Bacterial regulatory proteins, tetR family M5598_01155 PF01551 Peptidase family M23 M5598_01160 PF00132 Bacterial transferase hexapeptide (six repeats) M5598_01160 PF06426 Serine acetyltransferase, N-terminal M5598_01165 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus M5598_01165 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus M5598_01170 PF02556 Preprotein translocase subunit SecB M5598_01175 PF00581 Rhodanese-like domain M5598_01180 PF06415 BPG-independent PGAM N-terminus (iPGM_N) M5598_01180 PF01676 Metalloenzyme superfamily M5598_01190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M5598_01190 PF00672 HAMP domain M5598_01195 PF00939 Sodium:sulfate symporter transmembrane region M5598_01200 PF02666 Phosphatidylserine decarboxylase M5598_01205 PF03193 RsgA GTPase M5598_01210 PF00929 Exonuclease M5598_01280 PF08331 Domain of unknown function (DUF1730) M5598_01285 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE M5598_01290 PF01520 N-acetylmuramoyl-L-alanine amidase M5598_01295 PF08676 MutL C terminal dimerisation domain M5598_01295 PF01119 DNA mismatch repair protein, C-terminal domain M5598_01305 PF17209 Hfq protein M5598_01310 PF01926 50S ribosome-binding GTPase M5598_01310 PF13167 GTP-binding GTPase N-terminal M5598_01310 PF16360 GTP-binding GTPase Middle Region M5598_01315 PF12221 Bacterial membrane protein N terminal M5598_01315 PF01145 SPFH domain / Band 7 family M5598_01320 PF01145 SPFH domain / Band 7 family M5598_01325 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) M5598_01330 PF00709 Adenylosuccinate synthetase M5598_01335 PF08238 Sel1 repeat M5598_01340 PF00970 Oxidoreductase FAD-binding domain M5598_01340 PF00042 Globin M5598_01340 PF00175 Oxidoreductase NAD-binding domain M5598_01345 PF02082 Transcriptional regulator M5598_01350 PF00773 RNB domain M5598_01350 PF17876 Cold shock domain M5598_01350 PF08461 Ribonuclease R winged-helix domain M5598_01350 PF08206 Ribonuclease B OB domain M5598_01350 PF00575 S1 RNA binding domain M5598_01355 PF00588 SpoU rRNA Methylase family M5598_01355 PF08032 RNA 2'-O ribose methyltransferase substrate binding M5598_01360 PF13419 Haloacid dehalogenase-like hydrolase M5598_01365 PF00579 tRNA synthetases class I (W and Y) M5598_01380 PF00117 Glutamine amidotransferase class-I M5598_01385 PF00202 Aminotransferase class-III M5598_01390 PF04958 Arginine N-succinyltransferase beta subunit M5598_01395 PF00171 Aldehyde dehydrogenase family M5598_01405 PF00027 Cyclic nucleotide-binding domain M5598_01405 PF13545 Crp-like helix-turn-helix domain M5598_01410 PF00485 Phosphoribulokinase / Uridine kinase family M5598_01415 PF06794 Uncharacterised protein family (UPF0270) M5598_01420 PF00561 alpha/beta hydrolase fold M5598_01430 PF12848 ABC transporter M5598_01430 PF00005 ABC transporter M5598_01435 PF02525 Flavodoxin-like fold M5598_01440 PF00999 Sodium/hydrogen exchanger family M5598_01440 PF02254 TrkA-N domain M5598_01450 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M5598_01455 PF01112 Asparaginase M5598_01460 PF04102 SlyX M5598_01470 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M5598_01470 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M5598_01475 PF13309 HTH domain M5598_01475 PF08348 YheO-like PAS domain M5598_01480 PF02635 DsrE/DsrF-like family M5598_01485 PF02635 DsrE/DsrF-like family M5598_01490 PF04077 DsrH like protein M5598_01495 PF00164 Ribosomal protein S12/S23 M5598_01500 PF00177 Ribosomal protein S7p/S5e M5598_01505 PF14492 Elongation Factor G, domain II M5598_01505 PF03764 Elongation factor G, domain IV M5598_01505 PF00009 Elongation factor Tu GTP binding domain M5598_01505 PF03144 Elongation factor Tu domain 2 M5598_01505 PF00679 Elongation factor G C-terminus M5598_01510 PF03143 Elongation factor Tu C-terminal domain M5598_01510 PF03144 Elongation factor Tu domain 2 M5598_01510 PF00009 Elongation factor Tu GTP binding domain M5598_01515 PF04324 BFD-like [2Fe-2S] binding domain M5598_01520 PF00210 Ferritin-like domain M5598_01525 PF03949 Malic enzyme, NAD binding domain M5598_01525 PF00390 Malic enzyme, N-terminal domain M5598_01530 PF01340 Met Apo-repressor, MetJ M5598_01535 PF01053 Cys/Met metabolism PLP-dependent enzyme M5598_01540 PF00696 Amino acid kinase family M5598_01540 PF00742 Homoserine dehydrogenase M5598_01540 PF03447 Homoserine dehydrogenase, NAD binding domain M5598_01545 PF02219 Methylenetetrahydrofolate reductase M5598_01555 PF00311 Phosphoenolpyruvate carboxylase M5598_01560 PF07687 Peptidase dimerisation domain M5598_01560 PF01546 Peptidase family M20/M25/M40 M5598_01565 PF02774 Semialdehyde dehydrogenase, dimerisation domain M5598_01565 PF01118 Semialdehyde dehydrogenase, NAD binding domain M5598_01570 PF00696 Amino acid kinase family M5598_01575 PF00764 Arginosuccinate synthase M5598_01580 PF00206 Lyase M5598_01580 PF14698 Argininosuccinate lyase C-terminal M5598_01580 PF00583 Acetyltransferase (GNAT) family M5598_01590 PF00462 Glutaredoxin M5598_01590 PF08534 Redoxin M5598_01595 PF03466 LysR substrate binding domain M5598_01595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_01600 PF17092 Penicillin-binding protein OB-like domain M5598_01600 PF00912 Transglycosylase M5598_01600 PF00905 Penicillin binding protein transpeptidase domain M5598_01610 PF05137 Fimbrial assembly protein (PilN) M5598_01620 PF04351 Pilus assembly protein, PilP M5598_01625 PF00263 Bacterial type II and III secretion system protein M5598_01625 PF11741 AMIN domain M5598_01625 PF07660 Secretin and TonB N terminus short domain M5598_01625 PF03958 Bacterial type II/III secretion system short domain M5598_01630 PF01202 Shikimate kinase M5598_01635 PF01761 3-dehydroquinate synthase M5598_01645 PF02086 D12 class N6 adenine-specific DNA methyltransferase M5598_01650 PF00834 Ribulose-phosphate 3 epimerase family M5598_01655 PF01250 Ribosomal protein S6 M5598_01660 PF00436 Single-strand binding protein family M5598_01665 PF01084 Ribosomal protein S18 M5598_01670 PF03948 Ribosomal protein L9, C-terminal domain M5598_01670 PF01281 Ribosomal protein L9, N-terminal domain M5598_01680 PF03796 DnaB-like helicase C terminal domain M5598_01680 PF00772 DnaB-like helicase N terminal domain M5598_01685 PF01168 Alanine racemase, N-terminal domain M5598_01685 PF00842 Alanine racemase, C-terminal domain M5598_01695 PF01894 Uncharacterised protein family UPF0047 M5598_01700 PF00342 Phosphoglucose isomerase M5598_01710 PF01475 Ferric uptake regulator family M5598_01715 PF01207 Dihydrouridine synthase (Dus) M5598_01735 PF00667 FAD binding domain M5598_01735 PF00258 Flavodoxin M5598_01735 PF00175 Oxidoreductase NAD-binding domain M5598_01740 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M5598_01740 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M5598_01745 PF01507 Phosphoadenosine phosphosulfate reductase family M5598_01805 PF00999 Sodium/hydrogen exchanger family M5598_01810 PF02574 Homocysteine S-methyltransferase M5598_01810 PF00809 Pterin binding enzyme M5598_01810 PF02607 B12 binding domain M5598_01810 PF02310 B12 binding domain M5598_01810 PF02965 Vitamin B12 dependent methionine synthase, activation domain M5598_01815 PF00696 Amino acid kinase family M5598_01815 PF01842 ACT domain M5598_01820 PF00266 Aminotransferase class-V M5598_01830 PF00005 ABC transporter M5598_01830 PF17755 UvrA DNA-binding domain M5598_01830 PF17760 UvrA interaction domain M5598_01835 PF00483 Nucleotidyl transferase M5598_01840 PF00196 Bacterial regulatory proteins, luxR family M5598_01845 PF00436 Single-strand binding protein family M5598_01850 PF00563 EAL domain M5598_01850 PF17157 Gammaproteobacterial periplasmic sensor domain M5598_01850 PF00990 Diguanylate cyclase, GGDEF domain M5598_01870 PF07660 Secretin and TonB N terminus short domain M5598_01870 PF03958 Bacterial type II/III secretion system short domain M5598_01870 PF11741 AMIN domain M5598_01870 PF00263 Bacterial type II and III secretion system protein M5598_01875 PF13401 AAA domain M5598_01875 PF01471 Putative peptidoglycan binding domain M5598_01885 PF00437 Type II/IV secretion system protein M5598_01885 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M5598_01890 PF00482 Type II secretion system (T2SS), protein F M5598_01900 PF07963 Prokaryotic N-terminal methylation motif M5598_01940 PF04085 rod shape-determining protein MreC M5598_01945 PF04093 rod shape-determining protein MreD M5598_01950 PF02545 Maf-like protein M5598_01955 PF00575 S1 RNA binding domain M5598_01955 PF10150 Ribonuclease E/G family M5598_01960 PF13502 AsmA-like C-terminal region M5598_01960 PF13116 Protein of unknown function M5598_01965 PF00795 Carbon-nitrogen hydrolase M5598_01970 PF01523 Putative modulator of DNA gyrase M5598_01975 PF02562 PhoH-like protein M5598_01975 PF13638 PIN domain M5598_01980 PF12137 RNA polymerase recycling family C-terminal M5598_01980 PF00176 SNF2 family N-terminal domain M5598_01980 PF18339 RapA N-terminal Tudor like domain 1 M5598_01980 PF18337 RapA N-terminal Tudor like domain M5598_01980 PF00271 Helicase conserved C-terminal domain M5598_01990 PF00849 RNA pseudouridylate synthase M5598_01995 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M5598_01995 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M5598_02000 PF04751 Protein of unknown function (DUF615) M5598_02005 PF01523 Putative modulator of DNA gyrase M5598_02010 PF00571 CBS domain M5598_02010 PF01769 Divalent cation transporter M5598_02010 PF03448 MgtE intracellular N domain M5598_02015 PF00381 PTS HPr component phosphorylation site M5598_02020 PF03668 P-loop ATPase protein family M5598_02025 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M5598_02030 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein M5598_02035 PF00309 Sigma-54 factor, Activator interacting domain (AID) M5598_02035 PF04963 Sigma-54 factor, core binding domain M5598_02035 PF04552 Sigma-54, DNA binding domain M5598_02040 PF00005 ABC transporter M5598_02040 PF12399 Branched-chain amino acid ATP-binding cassette transporter M5598_02045 PF03968 OstA-like protein M5598_02055 PF00571 CBS domain M5598_02055 PF01380 SIS domain M5598_02060 PF01699 Sodium/calcium exchanger protein M5598_02065 PF00005 ABC transporter M5598_02070 PF02405 Permease MlaE M5598_02075 PF02470 MlaD protein M5598_02080 PF05494 MlaC protein M5598_02090 PF01722 BolA-like protein M5598_02095 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M5598_02100 PF01553 Acyltransferase M5598_02105 PF01042 Endoribonuclease L-PSP M5598_02110 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain M5598_02110 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain M5598_02115 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M5598_02115 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M5598_02125 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M5598_02125 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M5598_02135 PF06877 Regulator of ribonuclease activity B M5598_02145 PF00583 Acetyltransferase (GNAT) family M5598_02155 PF00133 tRNA synthetases class I (I, L, M and V) M5598_02155 PF10458 Valyl tRNA synthetase tRNA binding arm M5598_02155 PF08264 Anticodon-binding domain of tRNA M5598_02160 PF04364 DNA polymerase III chi subunit, HolC M5598_02165 PF00883 Cytosol aminopeptidase family, catalytic domain M5598_02165 PF02789 Cytosol aminopeptidase family, N-terminal domain M5598_02170 PF03739 Lipopolysaccharide export system permease LptF/LptG M5598_02175 PF03739 Lipopolysaccharide export system permease LptF/LptG M5598_02185 PF10011 Predicted membrane protein (DUF2254) M5598_02190 PF00106 short chain dehydrogenase M5598_02280 PF01522 Polysaccharide deacetylase M5598_02285 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M5598_02290 PF02378 Phosphotransferase system, EIIC M5598_02295 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit M5598_02300 PF11975 Family 4 glycosyl hydrolase C-terminal domain M5598_02300 PF02056 Family 4 glycosyl hydrolase M5598_02305 PF04794 YdjC-like protein M5598_02310 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M5598_02310 PF00356 Bacterial regulatory proteins, lacI family M5598_02315 PF00072 Response regulator receiver domain M5598_02360 PF00171 Aldehyde dehydrogenase family M5598_02390 PF17200 Single Cache domain 2 M5598_02390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M5598_02390 PF00672 HAMP domain M5598_02430 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain M5598_02430 PF01464 Transglycosylase SLT domain M5598_02435 PF04362 Bacterial Fe(2+) trafficking M5598_02440 PF00730 HhH-GPD superfamily base excision DNA repair protein M5598_02440 PF14815 NUDIX domain M5598_02440 PF00633 Helix-hairpin-helix motif M5598_02445 PF02390 Putative methyltransferase M5598_02450 PF02086 D12 class N6 adenine-specific DNA methyltransferase M5598_02455 PF04960 Glutaminase M5598_02460 PF06969 HemN C-terminal domain M5598_02460 PF04055 Radical SAM superfamily M5598_02465 PF01725 Ham1 family M5598_02475 PF02594 Uncharacterised ACR, YggU family COG1872 M5598_02480 PF02325 YGGT family M5598_02485 PF03807 NADP oxidoreductase coenzyme F420-dependent M5598_02485 PF14748 Pyrroline-5-carboxylate reductase dimerisation M5598_02490 PF01168 Alanine racemase, N-terminal domain M5598_02495 PF00437 Type II/IV secretion system protein M5598_02500 PF00437 Type II/IV secretion system protein M5598_02505 PF03652 Holliday junction resolvase M5598_02510 PF02622 Uncharacterized ACR, COG1678 M5598_02515 PF02951 Prokaryotic glutathione synthetase, N-terminal domain M5598_02515 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain M5598_02520 PF04452 RNA methyltransferase M5598_02525 PF04231 Endonuclease I M5598_02530 PF17283 SprT-like zinc ribbon domain M5598_02530 PF10263 SprT-like family M5598_02540 PF02772 S-adenosylmethionine synthetase, central domain M5598_02540 PF00438 S-adenosylmethionine synthetase, N-terminal domain M5598_02540 PF02773 S-adenosylmethionine synthetase, C-terminal domain M5598_02545 PF02779 Transketolase, pyrimidine binding domain M5598_02545 PF02780 Transketolase, C-terminal domain M5598_02545 PF00456 Transketolase, thiamine diphosphate binding domain M5598_02550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_02550 PF03466 LysR substrate binding domain M5598_02555 PF00593 TonB dependent receptor M5598_02555 PF07715 TonB-dependent Receptor Plug Domain M5598_02560 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M5598_02560 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M5598_02565 PF00162 Phosphoglycerate kinase M5598_02570 PF01116 Fructose-bisphosphate aldolase class-II M5598_02575 PF00924 Mechanosensitive ion channel M5598_02575 PF05552 Conserved TM helix M5598_02580 PF04073 Aminoacyl-tRNA editing domain M5598_02585 PF01810 LysE type translocator M5598_02590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_02590 PF03466 LysR substrate binding domain M5598_02595 PF04402 Protein of unknown function (DUF541) M5598_02600 PF01842 ACT domain M5598_02600 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M5598_02600 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M5598_02605 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) M5598_02610 PF01812 5-formyltetrahydrofolate cyclo-ligase family M5598_02620 PF05164 Cell division protein ZapA M5598_02625 PF03695 Uncharacterised protein family (UPF0149) M5598_02630 PF01494 FAD binding domain M5598_02635 PF01494 FAD binding domain M5598_02650 PF01571 Aminomethyltransferase folate-binding domain M5598_02655 PF03937 Flavinator of succinate dehydrogenase M5598_02660 PF02910 Fumarate reductase flavoprotein C-term M5598_02660 PF00890 FAD binding domain M5598_02665 PF04542 Sigma-70 region 2 M5598_02665 PF08281 Sigma-70, region 4 M5598_02670 PF03872 Anti sigma-E protein RseA, N-terminal domain M5598_02670 PF03873 Anti sigma-E protein RseA, C-terminal domain M5598_02675 PF17188 MucB/RseB C-terminal domain M5598_02675 PF03888 MucB/RseB N-terminal domain M5598_02685 PF00009 Elongation factor Tu GTP binding domain M5598_02685 PF00679 Elongation factor G C-terminus M5598_02685 PF06421 GTP-binding protein LepA C-terminus M5598_02685 PF03144 Elongation factor Tu domain 2 M5598_02690 PF10502 Signal peptidase, peptidase S26 M5598_02695 PF00035 Double-stranded RNA binding motif M5598_02695 PF14622 Ribonuclease-III-like M5598_02700 PF07650 KH domain M5598_02700 PF01926 50S ribosome-binding GTPase M5598_02705 PF02565 Recombination protein O C terminal M5598_02705 PF11967 Recombination protein O N terminal M5598_02710 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ M5598_02715 PF01648 4'-phosphopantetheinyl transferase superfamily M5598_02720 PF00672 HAMP domain M5598_02720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_02720 PF00512 His Kinase A (phospho-acceptor) domain M5598_02720 PF01627 Hpt domain M5598_02720 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M5598_02720 PF00072 Response regulator receiver domain M5598_02725 PF01938 TRAM domain M5598_02725 PF05958 tRNA (Uracil-5-)-methyltransferase M5598_02730 PF13291 ACT domain M5598_02730 PF04607 Region found in RelA / SpoT proteins M5598_02730 PF02824 TGS domain M5598_02735 PF03819 MazG nucleotide pyrophosphohydrolase domain M5598_02740 PF00117 Glutamine amidotransferase class-I M5598_02740 PF06418 CTP synthase N-terminus M5598_02745 PF03952 Enolase, N-terminal domain M5598_02745 PF00113 Enolase, C-terminal TIM barrel domain M5598_02750 PF04977 Septum formation initiator M5598_02755 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase M5598_02760 PF02542 YgbB family M5598_02765 PF01142 tRNA pseudouridine synthase D (TruD) M5598_02770 PF01975 Survival protein SurE M5598_02780 PF01476 LysM domain M5598_02780 PF01551 Peptidase family M23 M5598_02785 PF04542 Sigma-70 region 2 M5598_02785 PF04539 Sigma-70 region 3 M5598_02785 PF04545 Sigma-70, region 4 M5598_02785 PF00140 Sigma-70 factor, region 1.2 M5598_02790 PF00488 MutS domain V M5598_02790 PF05190 MutS family domain IV M5598_02790 PF05188 MutS domain II M5598_02790 PF01624 MutS domain I M5598_02790 PF05192 MutS domain III M5598_02795 PF02464 Competence-damaged protein M5598_02800 PF00154 recA bacterial DNA recombination protein M5598_02805 PF02631 RecX family M5598_02810 PF02272 DHHA1 domain M5598_02810 PF01411 tRNA synthetases class II (A) M5598_02810 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M5598_02815 PF00696 Amino acid kinase family M5598_02815 PF13840 ACT domain M5598_02815 PF01842 ACT domain M5598_02820 PF02599 Global regulator protein family M5598_02880 PF04277 Oxaloacetate decarboxylase, gamma chain M5598_02885 PF00364 Biotin-requiring enzyme M5598_02885 PF00682 HMGL-like M5598_02885 PF02436 Conserved carboxylase domain M5598_02890 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit M5598_02895 PF08240 Alcohol dehydrogenase GroES-like domain M5598_02895 PF00107 Zinc-binding dehydrogenase M5598_02900 PF09335 SNARE associated Golgi protein M5598_02905 PF00675 Insulinase (Peptidase family M16) M5598_02905 PF05193 Peptidase M16 inactive domain M5598_02910 PF04262 Glutamate-cysteine ligase M5598_02920 PF02664 S-Ribosylhomocysteinase (LuxS) M5598_02925 PF00571 CBS domain M5598_02925 PF03471 Transporter associated domain M5598_02925 PF01595 Cyclin M transmembrane N-terminal domain M5598_02930 PF01578 Cytochrome C assembly protein M5598_02935 PF00448 SRP54-type protein, GTPase domain M5598_02935 PF02881 SRP54-type protein, helical bundle domain M5598_02935 PF02978 Signal peptide binding domain M5598_02940 PF00886 Ribosomal protein S16 M5598_02945 PF05239 PRC-barrel domain M5598_02945 PF01782 RimM N-terminal domain M5598_02950 PF01746 tRNA (Guanine-1)-methyltransferase M5598_02955 PF01245 Ribosomal protein L19 M5598_02960 PF03884 DNA gyrase inhibitor YacG M5598_02965 PF07072 Cell division protein M5598_02970 PF01121 Dephospho-CoA kinase M5598_02975 PF06750 Bacterial Peptidase A24 N-terminal domain M5598_02975 PF01478 Type IV leader peptidase family M5598_02980 PF00482 Type II secretion system (T2SS), protein F M5598_02985 PF00437 Type II/IV secretion system protein M5598_02985 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M5598_02995 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain M5598_02995 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain M5598_03000 PF01510 N-acetylmuramoyl-L-alanine amidase M5598_03005 PF00392 Bacterial regulatory proteins, gntR family M5598_03005 PF07729 FCD domain M5598_03010 PF17831 Pyruvate dehydrogenase E1 component middle domain M5598_03010 PF00456 Transketolase, thiamine diphosphate binding domain M5598_03015 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M5598_03015 PF00364 Biotin-requiring enzyme M5598_03015 PF02817 e3 binding domain M5598_03020 PF07992 Pyridine nucleotide-disulphide oxidoreductase M5598_03020 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M5598_03025 PF00440 Bacterial regulatory proteins, tetR family M5598_03030 PF00156 Phosphoribosyl transferase domain M5598_03035 PF00484 Carbonic anhydrase M5598_03040 PF00916 Sulfate permease family M5598_03040 PF01740 STAS domain M5598_03045 PF00005 ABC transporter M5598_03050 PF01061 ABC-2 type transporter M5598_03055 PF03279 Bacterial lipid A biosynthesis acyltransferase M5598_03060 PF02569 Pantoate-beta-alanine ligase M5598_03065 PF02548 Ketopantoate hydroxymethyltransferase M5598_03070 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) M5598_03075 PF12627 Probable RNA and SrmB- binding site of polymerase A M5598_03075 PF01743 Poly A polymerase head domain M5598_03075 PF12626 Polymerase A arginine-rich C-terminus M5598_03080 PF00749 tRNA synthetases class I (E and Q), catalytic domain M5598_03085 PF01258 Prokaryotic dksA/traR C4-type zinc finger M5598_03090 PF03749 Sugar fermentation stimulation protein RE domain M5598_03090 PF17746 SfsA N-terminal OB domain M5598_03095 PF08482 ATP-dependent helicase C-terminal M5598_03095 PF00270 DEAD/DEAH box helicase M5598_03095 PF04408 Helicase associated domain (HA2) M5598_03095 PF00271 Helicase conserved C-terminal domain M5598_03100 PF00912 Transglycosylase M5598_03100 PF00905 Penicillin binding protein transpeptidase domain M5598_03100 PF14814 Bifunctional transglycosylase second domain M5598_03105 PF01734 Patatin-like phospholipase M5598_03110 PF11791 Aconitate B N-terminal domain M5598_03110 PF06434 Aconitate hydratase 2 N-terminus M5598_03110 PF00330 Aconitase family (aconitate hydratase) M5598_03115 PF06062 Uncharacterised protein family (UPF0231) M5598_03120 PF00543 Nitrogen regulatory protein P-II M5598_03125 PF00909 Ammonium Transporter Family M5598_03130 PF13416 Bacterial extracellular solute-binding protein M5598_03140 PF08402 TOBE domain M5598_03140 PF00005 ABC transporter M5598_03145 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M5598_03145 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M5598_03145 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M5598_03145 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M5598_03150 PF06165 Glycosyltransferase family 36 M5598_03150 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain M5598_03155 PF00728 Glycosyl hydrolase family 20, catalytic domain M5598_03155 PF02838 Glycosyl hydrolase family 20, domain 2 M5598_03160 PF01869 BadF/BadG/BcrA/BcrD ATPase family M5598_03170 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M5598_03170 PF00005 ABC transporter M5598_03175 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M5598_03175 PF00005 ABC transporter M5598_03180 PF00528 Binding-protein-dependent transport system inner membrane component M5598_03180 PF12911 N-terminal TM domain of oligopeptide transport permease C M5598_03185 PF00528 Binding-protein-dependent transport system inner membrane component M5598_03190 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M5598_03195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_03195 PF00512 His Kinase A (phospho-acceptor) domain M5598_03195 PF00072 Response regulator receiver domain M5598_03195 PF00497 Bacterial extracellular solute-binding proteins, family 3 M5598_03200 PF05175 Methyltransferase small domain M5598_03200 PF08468 Methyltransferase small domain N-terminal M5598_03205 PF01594 AI-2E family transporter M5598_03210 PF00202 Aminotransferase class-III M5598_03215 PF01521 Iron-sulphur cluster biosynthesis M5598_03225 PF00873 AcrB/AcrD/AcrF family M5598_03230 PF01551 Peptidase family M23 M5598_03230 PF01476 LysM domain M5598_03230 PF08525 Opacity-associated protein A N-terminal motif M5598_03235 PF00579 tRNA synthetases class I (W and Y) M5598_03240 PF00497 Bacterial extracellular solute-binding proteins, family 3 M5598_03240 PF01464 Transglycosylase SLT domain M5598_03245 PF02769 AIR synthase related protein, C-terminal domain M5598_03245 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain M5598_03245 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal M5598_03270 PF07687 Peptidase dimerisation domain M5598_03270 PF01546 Peptidase family M20/M25/M40 M5598_03275 PF00860 Permease family M5598_03280 PF00156 Phosphoribosyl transferase domain M5598_03285 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) M5598_03290 PF07417 Sigma factor-binding transcriptional regulator Crl M5598_03295 PF00696 Amino acid kinase family M5598_03295 PF01472 PUA domain M5598_03300 PF00171 Aldehyde dehydrogenase family M5598_03305 PF03477 ATP cone domain M5598_03310 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M5598_03310 PF01872 RibD C-terminal domain M5598_03315 PF00677 Lumazine binding domain M5598_03320 PF00925 GTP cyclohydrolase II M5598_03320 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase M5598_03325 PF00885 6,7-dimethyl-8-ribityllumazine synthase M5598_03330 PF01029 NusB family M5598_03335 PF00586 AIR synthase related protein, N-terminal domain M5598_03335 PF02769 AIR synthase related protein, C-terminal domain M5598_03340 PF04608 Phosphatidylglycerophosphatase A M5598_03345 PF13292 1-deoxy-D-xylulose-5-phosphate synthase M5598_03345 PF02779 Transketolase, pyrimidine binding domain M5598_03345 PF02780 Transketolase, C-terminal domain M5598_03350 PF00348 Polyprenyl synthetase M5598_03355 PF02609 Exonuclease VII small subunit M5598_03360 PF01618 MotA/TolQ/ExbB proton channel family M5598_03365 PF00691 OmpA family M5598_03370 PF02926 THUMP domain M5598_03370 PF02568 Thiamine biosynthesis protein (ThiI) M5598_03375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_03375 PF03466 LysR substrate binding domain M5598_03385 PF04241 Protein of unknown function (DUF423) M5598_03390 PF01728 FtsJ-like methyltransferase M5598_03390 PF18125 RlmM ferredoxin-like domain M5598_03395 PF01223 DNA/RNA non-specific endonuclease M5598_03400 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M5598_03400 PF01367 5'-3' exonuclease, C-terminal SAM fold M5598_03405 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases M5598_03405 PF11892 Domain of unknown function (DUF3412) M5598_03405 PF03641 Possible lysine decarboxylase M5598_03410 PF00990 Diguanylate cyclase, GGDEF domain M5598_03420 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term M5598_03420 PF14489 QueF-like protein M5598_03425 PF07348 Syd protein (SUKH-2) M5598_03430 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) M5598_03435 PF03180 NLPA lipoprotein M5598_03440 PF00528 Binding-protein-dependent transport system inner membrane component M5598_03445 PF09383 NIL domain M5598_03445 PF00005 ABC transporter M5598_03455 PF00356 Bacterial regulatory proteins, lacI family M5598_03460 PF02378 Phosphotransferase system, EIIC M5598_03460 PF00367 phosphotransferase system, EIIB M5598_03465 PF00128 Alpha amylase, catalytic domain M5598_03465 PF16657 Maltogenic Amylase, C-terminal domain M5598_03475 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) M5598_03475 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 M5598_03480 PF00464 Serine hydroxymethyltransferase M5598_03485 PF04055 Radical SAM superfamily M5598_03485 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family M5598_03490 PF03099 Biotin/lipoate A/B protein ligase family M5598_03495 PF04359 Protein of unknown function (DUF493) M5598_03500 PF07943 Penicillin-binding protein 5, C-terminal domain M5598_03500 PF00768 D-alanyl-D-alanine carboxypeptidase M5598_03505 PF05036 Sporulation related domain M5598_03505 PF03330 Lytic transglycolase M5598_03510 PF01098 Cell cycle protein M5598_03515 PF03717 Penicillin-binding Protein dimerisation domain M5598_03515 PF00905 Penicillin binding protein transpeptidase domain M5598_03520 PF02590 Predicted SPOUT methyltransferase M5598_03530 PF06144 DNA polymerase III, delta subunit M5598_03530 PF14840 Processivity clamp loader gamma complex DNA pol III C-term M5598_03535 PF04390 Lipopolysaccharide-assembly M5598_03540 PF08264 Anticodon-binding domain of tRNA M5598_03540 PF00133 tRNA synthetases class I (I, L, M and V) M5598_03540 PF13603 Leucyl-tRNA synthetase, Domain 2 M5598_03545 PF07295 Zinc-ribbon containing domain M5598_03550 PF00795 Carbon-nitrogen hydrolase M5598_03555 PF03471 Transporter associated domain M5598_03555 PF00571 CBS domain M5598_03560 PF02130 Uncharacterized protein family UPF0054 M5598_03565 PF02562 PhoH-like protein M5598_03570 PF01938 TRAM domain M5598_03570 PF00919 Uncharacterized protein family UPF0004 M5598_03570 PF04055 Radical SAM superfamily M5598_03575 PF01494 FAD binding domain M5598_03685 PF06071 Protein of unknown function (DUF933) M5598_03685 PF01926 50S ribosome-binding GTPase M5598_03690 PF01195 Peptidyl-tRNA hydrolase M5598_03695 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase M5598_03695 PF14572 Phosphoribosyl synthetase-associated domain M5598_03700 PF08544 GHMP kinases C terminal M5598_03700 PF00288 GHMP kinases N terminal domain M5598_03705 PF03550 Outer membrane lipoprotein LolB M5598_03710 PF01488 Shikimate / quinate 5-dehydrogenase M5598_03710 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain M5598_03710 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain M5598_03715 PF03462 PCRF domain M5598_03715 PF00472 RF-1 domain M5598_03720 PF13847 Methyltransferase domain M5598_03720 PF17827 PrmC N-terminal domain M5598_03725 PF04247 Invasion gene expression up-regulator, SirB M5598_03730 PF13369 Transglutaminase-like superfamily M5598_03735 PF00793 DAHP synthetase I family M5598_03740 PF02872 5'-nucleotidase, C-terminal domain M5598_03740 PF00149 Calcineurin-like phosphoesterase M5598_03745 PF04073 Aminoacyl-tRNA editing domain M5598_03750 PF00849 RNA pseudouridylate synthase M5598_03750 PF01479 S4 domain M5598_03755 PF01713 Smr domain M5598_03775 PF00728 Glycosyl hydrolase family 20, catalytic domain M5598_03775 PF03173 Putative carbohydrate binding domain M5598_03775 PF02838 Glycosyl hydrolase family 20, domain 2 M5598_03775 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain M5598_03790 PF00403 Heavy-metal-associated domain M5598_03795 PF13609 Gram-negative porin M5598_03800 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) M5598_03805 PF00749 tRNA synthetases class I (E and Q), catalytic domain M5598_03810 PF01389 OmpA-like transmembrane domain M5598_03810 PF00691 OmpA family M5598_03855 PF00072 Response regulator receiver domain M5598_03855 PF01584 CheW-like domain M5598_03860 PF03705 CheR methyltransferase, all-alpha domain M5598_03860 PF01739 CheR methyltransferase, SAM binding domain M5598_03865 PF00460 Flagella basal body rod protein M5598_03870 PF00460 Flagella basal body rod protein M5598_03870 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M5598_03875 PF03963 Flagellar hook capping protein - N-terminal region M5598_03875 PF13860 FlgD Ig-like domain M5598_03875 PF13861 FlgD Tudor-like domain M5598_03880 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M5598_03880 PF07559 Flagellar basal body protein FlaE M5598_03880 PF00460 Flagella basal body rod protein M5598_03885 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M5598_03885 PF00460 Flagella basal body rod protein M5598_03890 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M5598_03890 PF00460 Flagella basal body rod protein M5598_03895 PF02107 Flagellar L-ring protein M5598_03900 PF02119 Flagellar P-ring protein M5598_03905 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase M5598_03905 PF10135 Rod binding protein M5598_03910 PF07196 Flagellin hook IN motif M5598_03910 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M5598_03915 PF00669 Bacterial flagellin N-terminal helical region M5598_03920 PF00669 Bacterial flagellin N-terminal helical region M5598_03920 PF07196 Flagellin hook IN motif M5598_03920 PF00700 Bacterial flagellin C-terminal helical region M5598_03925 PF07196 Flagellin hook IN motif M5598_03925 PF00669 Bacterial flagellin N-terminal helical region M5598_03925 PF00700 Bacterial flagellin C-terminal helical region M5598_03930 PF00700 Bacterial flagellin C-terminal helical region M5598_03930 PF07196 Flagellin hook IN motif M5598_03930 PF00669 Bacterial flagellin N-terminal helical region M5598_03935 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 M5598_03940 PF05524 PEP-utilising enzyme, N-terminal M5598_03940 PF00391 PEP-utilising enzyme, mobile domain M5598_03940 PF02896 PEP-utilising enzyme, TIM barrel domain M5598_03945 PF00381 PTS HPr component phosphorylation site M5598_03950 PF00291 Pyridoxal-phosphate dependent enzyme M5598_03960 PF04354 ZipA, C-terminal FtsZ-binding domain M5598_03965 PF00533 BRCA1 C Terminus (BRCT) domain M5598_03965 PF01653 NAD-dependent DNA ligase adenylation domain M5598_03965 PF03120 NAD-dependent DNA ligase OB-fold domain M5598_03965 PF03119 NAD-dependent DNA ligase C4 zinc finger domain M5598_03965 PF12826 Helix-hairpin-helix motif M5598_03970 PF03573 outer membrane porin, OprD family M5598_03985 PF16200 C-terminal region of band_7 M5598_03985 PF01145 SPFH domain / Band 7 family M5598_03990 PF11658 Cellulose biosynthesis protein BcsG M5598_04000 PF10995 Cellulose biosynthesis GIL M5598_04010 PF06564 Cellulose biosynthesis protein BcsQ M5598_04015 PF07238 PilZ domain M5598_04015 PF03552 Cellulose synthase M5598_04015 PF00535 Glycosyl transferase family 2 M5598_04020 PF03170 Bacterial cellulose synthase subunit M5598_04025 PF01270 Glycosyl hydrolases family 8 M5598_04030 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) M5598_04035 PF00085 Thioredoxin M5598_04040 PF00106 short chain dehydrogenase M5598_04045 PF01370 NAD dependent epimerase/dehydratase family M5598_04045 PF08338 Domain of unknown function (DUF1731) M5598_04050 PF07556 Protein of unknown function (DUF1538) M5598_04055 PF07556 Protein of unknown function (DUF1538) M5598_04075 PF12850 Calcineurin-like phosphoesterase superfamily domain M5598_04090 PF17323 Trans-membrane regulatory protein ToxS M5598_04095 PF00486 Transcriptional regulatory protein, C terminal M5598_04100 PF00183 Hsp90 protein M5598_04100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_04105 PF05191 Adenylate kinase, active site lid M5598_04110 PF00762 Ferrochelatase M5598_04115 PF00854 POT family M5598_04120 PF02357 Transcription termination factor nusG M5598_04125 PF13537 Glutamine amidotransferase domain M5598_04125 PF00733 Asparagine synthase M5598_04130 PF02254 TrkA-N domain M5598_04130 PF00999 Sodium/hydrogen exchanger family M5598_04135 PF00480 ROK family M5598_04135 PF01047 MarR family M5598_04140 PF01979 Amidohydrolase family M5598_04145 PF02378 Phosphotransferase system, EIIC M5598_04145 PF00367 phosphotransferase system, EIIB M5598_04150 PF00749 tRNA synthetases class I (E and Q), catalytic domain M5598_04150 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain M5598_04155 PF01475 Ferric uptake regulator family M5598_04165 PF00258 Flavodoxin M5598_04175 PF12697 Alpha/beta hydrolase family M5598_04180 PF03925 SeqA protein C-terminal domain M5598_04180 PF17206 SeqA protein N-terminal domain M5598_04185 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M5598_04185 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M5598_04185 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M5598_04185 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M5598_04195 PF01784 NIF3 (NGG1p interacting factor 3) M5598_04200 PF00285 Citrate synthase, C-terminal domain M5598_04205 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M5598_04210 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M5598_04215 PF00890 FAD binding domain M5598_04215 PF02910 Fumarate reductase flavoprotein C-term M5598_04220 PF13085 2Fe-2S iron-sulfur cluster binding domain M5598_04225 PF00676 Dehydrogenase E1 component M5598_04225 PF02779 Transketolase, pyrimidine binding domain M5598_04225 PF16078 2-oxoglutarate dehydrogenase N-terminus M5598_04225 PF16870 2-oxoglutarate dehydrogenase C-terminal M5598_04230 PF02817 e3 binding domain M5598_04230 PF00364 Biotin-requiring enzyme M5598_04230 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M5598_04235 PF00549 CoA-ligase M5598_04235 PF08442 ATP-grasp domain M5598_04240 PF00549 CoA-ligase M5598_04240 PF02629 CoA binding domain M5598_04245 PF01610 Transposase M5598_04245 PF13542 Helix-turn-helix domain of transposase family ISL3 M5598_04245 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 M5598_04250 PF00551 Formyl transferase M5598_04255 PF00586 AIR synthase related protein, N-terminal domain M5598_04255 PF02769 AIR synthase related protein, C-terminal domain M5598_04265 PF00860 Permease family M5598_04280 PF03358 NADPH-dependent FMN reductase M5598_04285 PF03960 ArsC family M5598_04290 PF01435 Peptidase family M48 M5598_04290 PF13181 Tetratricopeptide repeat M5598_04300 PF01594 AI-2E family transporter M5598_04305 PF00578 AhpC/TSA family M5598_04310 PF01842 ACT domain M5598_04315 PF00701 Dihydrodipicolinate synthetase family M5598_04320 PF06804 NlpB/DapX lipoprotein M5598_04335 PF07687 Peptidase dimerisation domain M5598_04335 PF01546 Peptidase family M20/M25/M40 M5598_04340 PF03960 ArsC family M5598_04360 PF11143 Protein of unknown function (DUF2919) M5598_04365 PF04261 Dyp-type peroxidase family M5598_04370 PF07196 Flagellin hook IN motif M5598_04370 PF00669 Bacterial flagellin N-terminal helical region M5598_04370 PF00700 Bacterial flagellin C-terminal helical region M5598_04375 PF00700 Bacterial flagellin C-terminal helical region M5598_04375 PF00669 Bacterial flagellin N-terminal helical region M5598_04375 PF07196 Flagellin hook IN motif M5598_04380 PF00669 Bacterial flagellin N-terminal helical region M5598_04380 PF00700 Bacterial flagellin C-terminal helical region M5598_04380 PF07196 Flagellin hook IN motif M5598_04385 PF03646 FlaG protein M5598_04390 PF07196 Flagellin hook IN motif M5598_04390 PF07195 Flagellar hook-associated protein 2 C-terminus M5598_04390 PF02465 Flagellar hook-associated protein 2 N-terminus M5598_04400 PF02561 Flagellar protein FliS M5598_04405 PF06490 Flagellar regulatory protein FleQ M5598_04405 PF02954 Bacterial regulatory protein, Fis family M5598_04405 PF00158 Sigma-54 interaction domain M5598_04410 PF13188 PAS domain M5598_04410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_04410 PF00512 His Kinase A (phospho-acceptor) domain M5598_04415 PF02954 Bacterial regulatory protein, Fis family M5598_04415 PF00072 Response regulator receiver domain M5598_04415 PF00158 Sigma-54 interaction domain M5598_04420 PF02049 Flagellar hook-basal body complex protein FliE M5598_04425 PF01514 Secretory protein of YscJ/FliF family M5598_04425 PF08345 Flagellar M-ring protein C-terminal M5598_04430 PF14841 FliG middle domain M5598_04430 PF01706 FliG C-terminal domain M5598_04430 PF14842 FliG N-terminal domain M5598_04440 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M5598_04440 PF18269 T3SS EscN ATPase C-terminal domain M5598_04460 PF02154 Flagellar motor switch protein FliM M5598_04460 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M5598_04465 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M5598_04470 PF04347 Flagellar biosynthesis protein, FliO M5598_04475 PF00813 FliP family M5598_04480 PF01313 Bacterial export proteins, family 3 M5598_04485 PF01311 Bacterial export proteins, family 1 M5598_04490 PF01312 FlhB HrpN YscU SpaS Family M5598_04495 PF00771 FHIPEP family M5598_04500 PF00448 SRP54-type protein, GTPase domain M5598_04505 PF10609 NUBPL iron-transfer P-loop NTPase M5598_04510 PF04545 Sigma-70, region 4 M5598_04510 PF04539 Sigma-70 region 3 M5598_04510 PF04542 Sigma-70 region 2 M5598_04515 PF00072 Response regulator receiver domain M5598_04520 PF04344 Chemotaxis phosphatase, CheZ M5598_04525 PF02895 Signal transducing histidine kinase, homodimeric domain M5598_04525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_04525 PF01627 Hpt domain M5598_04525 PF00072 Response regulator receiver domain M5598_04525 PF01584 CheW-like domain M5598_04530 PF01339 CheB methylesterase M5598_04530 PF00072 Response regulator receiver domain M5598_04535 PF13614 AAA domain M5598_04545 PF01584 CheW-like domain M5598_04555 PF00005 ABC transporter M5598_04560 PF03379 CcmB protein M5598_04565 PF01578 Cytochrome C assembly protein M5598_04570 PF04995 Heme exporter protein D (CcmD) M5598_04575 PF03100 CcmE M5598_04580 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal M5598_04580 PF01578 Cytochrome C assembly protein M5598_04585 PF08534 Redoxin M5598_04590 PF03918 Cytochrome C biogenesis protein M5598_04600 PF04333 MlaA lipoprotein M5598_04605 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) M5598_04610 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) M5598_04620 PF04542 Sigma-70 region 2 M5598_04620 PF08281 Sigma-70, region 4 M5598_04625 PF00108 Thiolase, N-terminal domain M5598_04625 PF02803 Thiolase, C-terminal domain M5598_04630 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M5598_04630 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M5598_04630 PF00378 Enoyl-CoA hydratase/isomerase M5598_04640 PF00675 Insulinase (Peptidase family M16) M5598_04640 PF05193 Peptidase M16 inactive domain M5598_04640 PF16187 Middle or third domain of peptidase_M16 M5598_04645 PF00300 Histidine phosphatase superfamily (branch 1) M5598_04650 PF01713 Smr domain M5598_04655 PF05175 Methyltransferase small domain M5598_04660 PF01264 Chorismate synthase M5598_04665 PF03458 UPF0126 domain M5598_04670 PF04315 Elongation factor P hydroxylase M5598_04675 PF08891 YfcL protein M5598_04680 PF03358 NADPH-dependent FMN reductase M5598_04685 PF01266 FAD dependent oxidoreductase M5598_04685 PF05430 S-adenosyl-L-methionine-dependent methyltransferase M5598_04690 PF00109 Beta-ketoacyl synthase, N-terminal domain M5598_04690 PF02801 Beta-ketoacyl synthase, C-terminal domain M5598_04695 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M5598_04695 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M5598_04695 PF11890 Domain of unknown function (DUF3410) M5598_04700 PF01118 Semialdehyde dehydrogenase, NAD binding domain M5598_04700 PF02774 Semialdehyde dehydrogenase, dimerisation domain M5598_04710 PF01416 tRNA pseudouridine synthase M5598_04715 PF17848 Acetyl-coA carboxylase zinc finger domain M5598_04715 PF01039 Carboxyl transferase domain M5598_04720 PF08245 Mur ligase middle domain M5598_04720 PF02875 Mur ligase family, glutamate ligase domain M5598_04725 PF05036 Sporulation related domain M5598_04730 PF02674 Colicin V production protein M5598_04735 PF00156 Phosphoribosyl transferase domain M5598_04740 PF03466 LysR substrate binding domain M5598_04740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_04745 PF00072 Response regulator receiver domain M5598_04750 PF04304 Protein of unknown function (DUF454) M5598_04755 PF00156 Phosphoribosyl transferase domain M5598_04760 PF12169 DNA polymerase III subunits gamma and tau domain III M5598_04760 PF12170 DNA polymerase III tau subunit V interacting with alpha M5598_04760 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding M5598_04765 PF02575 YbaB/EbfC DNA-binding family M5598_04770 PF02132 RecR protein M5598_04770 PF13662 Toprim domain M5598_04775 PF00230 Major intrinsic protein M5598_04785 PF01042 Endoribonuclease L-PSP M5598_04790 PF03313 Serine dehydratase alpha chain M5598_04800 PF03692 Putative zinc- or iron-chelating domain M5598_04805 PF04226 Transglycosylase associated protein M5598_04810 PF03692 Putative zinc- or iron-chelating domain M5598_04815 PF00924 Mechanosensitive ion channel M5598_04815 PF05552 Conserved TM helix M5598_04820 PF03992 Antibiotic biosynthesis monooxygenase M5598_04825 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M5598_04835 PF00245 Alkaline phosphatase M5598_04850 PF13847 Methyltransferase domain M5598_04855 PF02743 Cache domain M5598_04855 PF00672 HAMP domain M5598_04855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M5598_04860 PF01263 Aldose 1-epimerase M5598_04865 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M5598_04865 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M5598_04870 PF01641 SelR domain M5598_04880 PF07023 Protein of unknown function (DUF1315) M5598_04885 PF00710 Asparaginase, N-terminal M5598_04885 PF17763 Glutaminase/Asparaginase C-terminal domain M5598_04890 PF01343 Peptidase family S49 M5598_04895 PF07992 Pyridine nucleotide-disulphide oxidoreductase M5598_04895 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M5598_04900 PF00881 Nitroreductase family M5598_04905 PF01751 Toprim domain M5598_04905 PF01131 DNA topoisomerase M5598_04915 PF00106 short chain dehydrogenase M5598_04920 PF00850 Histone deacetylase domain M5598_04930 PF11893 Domain of unknown function (DUF3413) M5598_04930 PF00884 Sulfatase M5598_04935 PF07208 Protein of unknown function (DUF1414) M5598_04940 PF04245 37-kD nucleoid-associated bacterial protein M5598_04955 PF03553 Na+/H+ antiporter family M5598_04960 PF01118 Semialdehyde dehydrogenase, NAD binding domain M5598_04960 PF02774 Semialdehyde dehydrogenase, dimerisation domain M5598_04965 PF00027 Cyclic nucleotide-binding domain M5598_04965 PF00520 Ion transport protein M5598_04970 PF01914 MarC family integral membrane protein M5598_04975 PF00171 Aldehyde dehydrogenase family M5598_04975 PF00465 Iron-containing alcohol dehydrogenase M5598_04990 PF02777 Iron/manganese superoxide dismutases, C-terminal domain M5598_04990 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain M5598_04995 PF00462 Glutaredoxin M5598_05005 PF13726 Na+-H+ antiporter family M5598_05005 PF03553 Na+/H+ antiporter family M5598_05010 PF00929 Exonuclease M5598_05015 PF00691 OmpA family M5598_05015 PF18393 MotY N-terminal domain M5598_05020 PF10952 Protein of unknown function (DUF2753) M5598_05025 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M5598_05030 PF10576 Iron-sulfur binding domain of endonuclease III M5598_05030 PF00730 HhH-GPD superfamily base excision DNA repair protein M5598_05030 PF00633 Helix-hairpin-helix motif M5598_05035 PF02508 Rnf-Nqr subunit, membrane protein M5598_05040 PF04205 FMN-binding domain M5598_05045 PF03116 NQR2, RnfD, RnfE family M5598_05050 PF10531 SLBB domain M5598_05050 PF13375 RnfC Barrel sandwich hybrid domain M5598_05050 PF12838 4Fe-4S dicluster domain M5598_05050 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit M5598_05055 PF04060 Putative Fe-S cluster M5598_05060 PF02508 Rnf-Nqr subunit, membrane protein M5598_05075 PF03372 Endonuclease/Exonuclease/phosphatase family M5598_05080 PF10689 Protein of unknown function (DUF2496) M5598_05085 PF07445 Primosomal replication protein priC M5598_05090 PF01925 Sulfite exporter TauE/SafE M5598_05095 PF13307 Helicase C-terminal domain M5598_05095 PF06733 DEAD_2 M5598_05105 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) M5598_05110 PF00849 RNA pseudouridylate synthase M5598_05115 PF03971 Monomeric isocitrate dehydrogenase M5598_05120 PF00313 'Cold-shock' DNA-binding domain M5598_05125 PF02617 ATP-dependent Clp protease adaptor protein ClpS M5598_05130 PF00004 ATPase family associated with various cellular activities (AAA) M5598_05130 PF07724 AAA domain (Cdc48 subfamily) M5598_05130 PF17871 AAA lid domain M5598_05130 PF02861 Clp amino terminal domain, pathogenicity island component M5598_05130 PF10431 C-terminal, D2-small domain, of ClpB protein M5598_05140 PF01176 Translation initiation factor 1A / IF-1 M5598_05145 PF04376 Arginine-tRNA-protein transferase, N terminus M5598_05145 PF04377 Arginine-tRNA-protein transferase, C terminus M5598_05150 PF03588 Leucyl/phenylalanyl-tRNA protein transferase M5598_05160 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M5598_05165 PF10692 Protein of unknown function (DUF2498) M5598_05170 PF08272 Topoisomerase I zinc-ribbon-like M5598_05170 PF01131 DNA topoisomerase M5598_05170 PF01751 Toprim domain M5598_05170 PF01396 Topoisomerase DNA binding C4 zinc finger M5598_05175 PF00483 Nucleotidyl transferase M5598_05180 PF00534 Glycosyl transferases group 1 M5598_05180 PF08323 Starch synthase catalytic domain M5598_05200 PF04994 TfoX C-terminal domain M5598_05200 PF04993 TfoX N-terminal domain M5598_05205 PF00356 Bacterial regulatory proteins, lacI family M5598_05210 PF02613 Nitrate reductase delta subunit M5598_05215 PF00072 Response regulator receiver domain M5598_05215 PF00486 Transcriptional regulatory protein, C terminal M5598_05220 PF02698 DUF218 domain M5598_05225 PF13847 Methyltransferase domain M5598_05230 PF17192 MukF middle domain M5598_05230 PF17193 MukF C-terminal domain M5598_05230 PF03882 MukF winged-helix domain M5598_05235 PF04288 MukE-like family M5598_05240 PF04310 MukB N-terminal M5598_05240 PF16330 MukB hinge domain M5598_05250 PF08443 RimK-like ATP-grasp domain M5598_05250 PF18030 RimK PreATP-grasp domain M5598_05260 PF08443 RimK-like ATP-grasp domain M5598_05260 PF18030 RimK PreATP-grasp domain M5598_05265 PF08003 Protein of unknown function (DUF1698) M5598_05270 PF13649 Methyltransferase domain M5598_05275 PF01904 Protein of unknown function DUF72 M5598_05280 PF02938 GAD domain M5598_05280 PF00152 tRNA synthetases class II (D, K and N) M5598_05280 PF01336 OB-fold nucleic acid binding domain M5598_05285 PF02075 Crossover junction endodeoxyribonuclease RuvC M5598_05290 PF02203 Tar ligand binding domain homologue M5598_05290 PF00672 HAMP domain M5598_05290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M5598_05295 PF07499 RuvA, C-terminal domain M5598_05295 PF01330 RuvA N terminal domain M5598_05300 PF17864 RuvB AAA lid domain M5598_05300 PF05491 RuvB C-terminal winged helix domain M5598_05300 PF05496 Holliday junction DNA helicase RuvB P-loop domain M5598_05305 PF01654 Cytochrome bd terminal oxidase subunit I M5598_05310 PF02322 Cytochrome bd terminal oxidase subunit II M5598_05315 PF08173 Membrane bound YbgT-like protein M5598_05325 PF03061 Thioesterase superfamily M5598_05330 PF01618 MotA/TolQ/ExbB proton channel family M5598_05335 PF02472 Biopolymer transport protein ExbD/TolR M5598_05345 PF07676 WD40-like Beta Propeller Repeat M5598_05345 PF04052 TolB amino-terminal domain M5598_05350 PF00691 OmpA family M5598_05355 PF13174 Tetratricopeptide repeat M5598_05355 PF16331 TolA binding protein trimerisation M5598_05360 PF01207 Dihydrouridine synthase (Dus) M5598_05365 PF03695 Uncharacterised protein family (UPF0149) M5598_05365 PF02810 SEC-C motif M5598_05370 PF02600 Disulfide bond formation protein DsbB M5598_05375 PF06450 Bacterial Na+/H+ antiporter B (NhaB) M5598_05380 PF07840 FadR C-terminal domain M5598_05380 PF00392 Bacterial regulatory proteins, gntR family M5598_05390 PF01588 Putative tRNA binding domain M5598_05390 PF09334 tRNA synthetases class I (M) M5598_05395 PF10609 NUBPL iron-transfer P-loop NTPase M5598_05400 PF00485 Phosphoribulokinase / Uridine kinase family M5598_05410 PF12557 Cob(I)alamin adenosyltransferase N terminal M5598_05410 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP M5598_05415 PF01451 Low molecular weight phosphotyrosine protein phosphatase M5598_05420 PF00916 Sulfate permease family M5598_05420 PF01740 STAS domain M5598_05425 PF10150 Ribonuclease E/G family M5598_05425 PF12111 Polyribonucleotide phosphorylase C terminal M5598_05425 PF00575 S1 RNA binding domain M5598_05430 PF00849 RNA pseudouridylate synthase M5598_05430 PF01479 S4 domain M5598_05435 PF02545 Maf-like protein M5598_05440 PF02620 Large ribosomal RNA subunit accumulation protein YceD M5598_05445 PF01783 Ribosomal L32p protein family M5598_05450 PF02504 Fatty acid synthesis protein M5598_05455 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M5598_05455 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M5598_05460 PF00698 Acyl transferase domain M5598_05470 PF00550 Phosphopantetheine attachment site M5598_05475 PF00109 Beta-ketoacyl synthase, N-terminal domain M5598_05475 PF02801 Beta-ketoacyl synthase, C-terminal domain M5598_05480 PF01063 Amino-transferase class IV M5598_05485 PF02618 YceG-like family M5598_05490 PF02223 Thymidylate kinase M5598_05495 PF09115 DNA polymerase III, delta subunit, C terminal M5598_05500 PF01026 TatD related DNase M5598_05505 PF00367 phosphotransferase system, EIIB M5598_05505 PF02378 Phosphotransferase system, EIIC M5598_05520 PF00209 Sodium:neurotransmitter symporter family M5598_05535 PF01734 Patatin-like phospholipase M5598_05540 PF00224 Pyruvate kinase, barrel domain M5598_05540 PF02887 Pyruvate kinase, alpha/beta domain M5598_05545 PF00480 ROK family M5598_05550 PF00072 Response regulator receiver domain M5598_05550 PF01584 CheW-like domain M5598_05555 PF07733 Bacterial DNA polymerase III alpha NTPase domain M5598_05555 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M5598_05555 PF14579 Helix-hairpin-helix motif M5598_05555 PF01336 OB-fold nucleic acid binding domain M5598_05555 PF02811 PHP domain M5598_05570 PF00106 short chain dehydrogenase M5598_05575 PF08496 Peptidase family S49 N-terminal M5598_05575 PF01343 Peptidase family S49 M5598_05580 PF02224 Cytidylate kinase M5598_05585 PF00575 S1 RNA binding domain M5598_05590 PF00216 Bacterial DNA-binding protein M5598_05595 PF06305 Lipopolysaccharide assembly protein A domain M5598_05600 PF18073 Rubredoxin metal binding domain M5598_05605 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family M5598_05610 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M5598_05620 PF01370 NAD dependent epimerase/dehydratase family M5598_05625 PF00535 Glycosyl transferase family 2 M5598_05635 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase M5598_05645 PF02470 MlaD protein M5598_05650 PF04403 Paraquat-inducible protein A M5598_05655 PF13442 Cytochrome C oxidase, cbb3-type, subunit III M5598_05660 PF00034 Cytochrome c M5598_05665 PF01568 Molydopterin dinucleotide binding domain M5598_05665 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M5598_05665 PF00384 Molybdopterin oxidoreductase M5598_05670 PF03916 Polysulphide reductase, NrfD M5598_05675 PF13247 4Fe-4S dicluster domain M5598_05680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_05680 PF00512 His Kinase A (phospho-acceptor) domain M5598_05685 PF00072 Response regulator receiver domain M5598_05685 PF00196 Bacterial regulatory proteins, luxR family M5598_05690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_05690 PF03466 LysR substrate binding domain M5598_05700 PF02683 Cytochrome C biogenesis protein transmembrane region M5598_05700 PF11412 Disulphide bond corrector protein DsbC M5598_05705 PF00085 Thioredoxin M5598_05725 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M5598_05735 PF00005 ABC transporter M5598_05735 PF02687 FtsX-like permease family M5598_05735 PF12704 MacB-like periplasmic core domain M5598_05740 PF02687 FtsX-like permease family M5598_05740 PF00005 ABC transporter M5598_05740 PF12704 MacB-like periplasmic core domain M5598_05745 PF12704 MacB-like periplasmic core domain M5598_05745 PF02687 FtsX-like permease family M5598_05745 PF00005 ABC transporter M5598_05750 PF00857 Isochorismatase family M5598_05755 PF02311 AraC-like ligand binding domain M5598_05755 PF12833 Helix-turn-helix domain M5598_05765 PF01717 Cobalamin-independent synthase, Catalytic domain M5598_05765 PF08267 Cobalamin-independent synthase, N-terminal domain M5598_05770 PF02698 DUF218 domain M5598_05795 PF01226 Formate/nitrite transporter M5598_05805 PF03649 Uncharacterised protein family (UPF0014) M5598_05810 PF06796 Periplasmic nitrate reductase protein NapE M5598_05815 PF03264 NapC/NirT cytochrome c family, N-terminal region M5598_05820 PF01568 Molydopterin dinucleotide binding domain M5598_05820 PF18364 Molybdopterin oxidoreductase N-terminal domain M5598_05820 PF00384 Molybdopterin oxidoreductase M5598_05825 PF16875 Glycosyl hydrolase family 36 N-terminal domain M5598_05825 PF16874 Glycosyl hydrolase family 36 C-terminal domain M5598_05835 PF02833 DHHA2 domain M5598_05835 PF01368 DHH family M5598_05845 PF00005 ABC transporter M5598_05850 PF00005 ABC transporter M5598_05850 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M5598_05855 PF00528 Binding-protein-dependent transport system inner membrane component M5598_05855 PF12911 N-terminal TM domain of oligopeptide transport permease C M5598_05860 PF00528 Binding-protein-dependent transport system inner membrane component M5598_05865 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M5598_05870 PF02954 Bacterial regulatory protein, Fis family M5598_05870 PF00158 Sigma-54 interaction domain M5598_05875 PF04012 PspA/IM30 family M5598_05880 PF06667 Phage shock protein B M5598_05885 PF04024 PspC domain M5598_05890 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M5598_05895 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M5598_05900 PF00873 AcrB/AcrD/AcrF family M5598_05905 PF03352 Methyladenine glycosylase M5598_05910 PF03280 Proteobacterial lipase chaperone protein M5598_05915 PF00561 alpha/beta hydrolase fold M5598_05920 PF01053 Cys/Met metabolism PLP-dependent enzyme M5598_05925 PF13396 Phospholipase_D-nuclease N-terminal M5598_05925 PF13091 PLD-like domain M5598_05930 PF00209 Sodium:neurotransmitter symporter family M5598_05935 PF12729 Four helix bundle sensory module for signal transduction M5598_05935 PF00672 HAMP domain M5598_05935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M5598_05940 PF00849 RNA pseudouridylate synthase M5598_05950 PF00970 Oxidoreductase FAD-binding domain M5598_05950 PF00175 Oxidoreductase NAD-binding domain M5598_05950 PF00111 2Fe-2S iron-sulfur cluster binding domain M5598_05955 PF03063 Prismane/CO dehydrogenase family M5598_05960 PF01590 GAF domain M5598_05960 PF00158 Sigma-54 interaction domain M5598_05970 PF01066 CDP-alcohol phosphatidyltransferase M5598_05975 PF00005 ABC transporter M5598_05980 PF00528 Binding-protein-dependent transport system inner membrane component M5598_05985 PF13416 Bacterial extracellular solute-binding protein M5598_05990 PF09335 SNARE associated Golgi protein M5598_06000 PF07992 Pyridine nucleotide-disulphide oxidoreductase M5598_06000 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster M5598_06010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_06010 PF00512 His Kinase A (phospho-acceptor) domain M5598_06015 PF00196 Bacterial regulatory proteins, luxR family M5598_06015 PF00072 Response regulator receiver domain M5598_06025 PF06945 Protein of unknown function (DUF1289) M5598_06035 PF00149 Calcineurin-like phosphoesterase M5598_06035 PF02872 5'-nucleotidase, C-terminal domain M5598_06055 PF01386 Ribosomal L25p family M5598_06060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_06065 PF00072 Response regulator receiver domain M5598_06065 PF00486 Transcriptional regulatory protein, C terminal M5598_06075 PF00271 Helicase conserved C-terminal domain M5598_06075 PF04851 Type III restriction enzyme, res subunit M5598_06080 PF00849 RNA pseudouridylate synthase M5598_06080 PF01479 S4 domain M5598_06085 PF07690 Major Facilitator Superfamily M5598_06095 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB M5598_06100 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) M5598_06115 PF03264 NapC/NirT cytochrome c family, N-terminal region M5598_06120 PF11066 Protein of unknown function (DUF2867) M5598_06120 PF13460 NAD(P)H-binding M5598_06125 PF01554 MatE M5598_06130 PF00005 ABC transporter M5598_06145 PF06965 Na+/H+ antiporter 1 M5598_06150 PF16295 Tetracyclin repressor-like, C-terminal domain M5598_06150 PF00440 Bacterial regulatory proteins, tetR family M5598_06155 PF09317 Domain of unknown function (DUF1974) M5598_06155 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M5598_06155 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M5598_06155 PF02770 Acyl-CoA dehydrogenase, middle domain M5598_06160 PF12241 Trans-2-enoyl-CoA reductase catalytic region M5598_06160 PF07055 Enoyl reductase FAD binding domain M5598_06160 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase M5598_06165 PF06826 Predicted Permease Membrane Region M5598_06165 PF02080 TrkA-C domain M5598_06170 PF00462 Glutaredoxin M5598_06175 PF00465 Iron-containing alcohol dehydrogenase M5598_06180 PF01418 Helix-turn-helix domain, rpiR family M5598_06180 PF01380 SIS domain M5598_06185 PF00282 Pyridoxal-dependent decarboxylase conserved domain M5598_06195 PF03956 Lysine exporter LysO M5598_06205 PF04993 TfoX N-terminal domain M5598_06205 PF04994 TfoX C-terminal domain M5598_06220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_06220 PF00512 His Kinase A (phospho-acceptor) domain M5598_06220 PF00497 Bacterial extracellular solute-binding proteins, family 3 M5598_06230 PF00266 Aminotransferase class-V M5598_06235 PF00291 Pyridoxal-phosphate dependent enzyme M5598_06240 PF00664 ABC transporter transmembrane region M5598_06240 PF00005 ABC transporter M5598_06245 PF00664 ABC transporter transmembrane region M5598_06245 PF00005 ABC transporter M5598_06250 PF07992 Pyridine nucleotide-disulphide oxidoreductase M5598_06260 PF00266 Aminotransferase class-V M5598_06270 PF00990 Diguanylate cyclase, GGDEF domain M5598_06270 PF00072 Response regulator receiver domain M5598_06275 PF00939 Sodium:sulfate symporter transmembrane region M5598_06280 PF02698 DUF218 domain M5598_06285 PF00390 Malic enzyme, N-terminal domain M5598_06285 PF03949 Malic enzyme, NAD binding domain M5598_06290 PF00270 DEAD/DEAH box helicase M5598_06290 PF08482 ATP-dependent helicase C-terminal M5598_06290 PF04408 Helicase associated domain (HA2) M5598_06290 PF00271 Helicase conserved C-terminal domain M5598_06295 PF02253 Phospholipase A1 M5598_06305 PF09423 PhoD-like phosphatase M5598_06305 PF16655 PhoD-like phosphatase, N-terminal domain M5598_06310 PF01259 SAICAR synthetase M5598_06330 PF00691 OmpA family M5598_06330 PF05736 OprF membrane domain M5598_06345 PF13183 4Fe-4S dicluster domain M5598_06345 PF02913 FAD linked oxidases, C-terminal domain M5598_06345 PF01565 FAD binding domain M5598_06350 PF04191 Phospholipid methyltransferase M5598_06360 PF00221 Aromatic amino acid lyase M5598_06365 PF01175 Urocanase Rossmann-like domain M5598_06365 PF17392 Urocanase C-terminal domain M5598_06365 PF17391 Urocanase N-terminal domain M5598_06370 PF00491 Arginase family M5598_06375 PF01979 Amidohydrolase family M5598_06380 PF00392 Bacterial regulatory proteins, gntR family M5598_06380 PF07702 UTRA domain M5598_06395 PF03129 Anticodon binding domain M5598_06395 PF02824 TGS domain M5598_06395 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M5598_06395 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M5598_06400 PF05198 Translation initiation factor IF-3, N-terminal domain M5598_06400 PF00707 Translation initiation factor IF-3, C-terminal domain M5598_06405 PF01632 Ribosomal protein L35 M5598_06410 PF00453 Ribosomal protein L20 M5598_06415 PF01906 Putative heavy-metal-binding M5598_06445 PF00990 Diguanylate cyclase, GGDEF domain M5598_06445 PF17158 Membrane-associated sensor, integral membrane domain M5598_06450 PF01409 tRNA synthetases class II core domain (F) M5598_06450 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain M5598_06455 PF03483 B3/4 domain M5598_06455 PF03484 tRNA synthetase B5 domain M5598_06455 PF03147 Ferredoxin-fold anticodon binding domain M5598_06455 PF01588 Putative tRNA binding domain M5598_06455 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain M5598_06465 PF00216 Bacterial DNA-binding protein M5598_06475 PF05724 Thiopurine S-methyltransferase (TPMT) M5598_06480 PF02222 ATP-grasp domain M5598_06485 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region M5598_06485 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M5598_06490 PF04172 LrgB-like family M5598_06495 PF03788 LrgA family M5598_06500 PF08411 Exonuclease C-terminal M5598_06500 PF00929 Exonuclease M5598_06505 PF00375 Sodium:dicarboxylate symporter family M5598_06510 PF13460 NAD(P)H-binding M5598_06515 PF02277 Phosphoribosyltransferase M5598_06520 PF02654 Cobalamin-5-phosphate synthase M5598_06525 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase M5598_06530 PF00300 Histidine phosphatase superfamily (branch 1) M5598_06540 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family M5598_06545 PF01032 FecCD transport family M5598_06550 PF00005 ABC transporter M5598_06570 PF03466 LysR substrate binding domain M5598_06570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_06590 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase M5598_06595 PF16363 GDP-mannose 4,6 dehydratase M5598_06600 PF04991 LicD family M5598_06605 PF01863 Protein of unknown function DUF45 M5598_06610 PF05971 RNA methyltransferase M5598_06630 PF00392 Bacterial regulatory proteins, gntR family M5598_06635 PF00171 Aldehyde dehydrogenase family M5598_06640 PF05544 Proline racemase M5598_06655 PF02423 Ornithine cyclodeaminase/mu-crystallin family M5598_06660 PF00701 Dihydrodipicolinate synthetase family M5598_06665 PF08402 TOBE domain M5598_06665 PF00005 ABC transporter M5598_06670 PF00528 Binding-protein-dependent transport system inner membrane component M5598_06675 PF00528 Binding-protein-dependent transport system inner membrane component M5598_06685 PF01752 Collagenase M5598_06685 PF08453 Peptidase family M9 N-terminal M5598_06695 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M5598_06695 PF00005 ABC transporter M5598_06700 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M5598_06700 PF00005 ABC transporter M5598_06705 PF00528 Binding-protein-dependent transport system inner membrane component M5598_06705 PF12911 N-terminal TM domain of oligopeptide transport permease C M5598_06710 PF00528 Binding-protein-dependent transport system inner membrane component M5598_06715 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M5598_06720 PF07687 Peptidase dimerisation domain M5598_06720 PF01546 Peptidase family M20/M25/M40 M5598_06725 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M5598_06730 PF04209 homogentisate 1,2-dioxygenase M5598_06740 PF14497 Glutathione S-transferase, C-terminal domain M5598_06740 PF02798 Glutathione S-transferase, N-terminal domain M5598_06780 PF01810 LysE type translocator M5598_06785 PF13302 Acetyltransferase (GNAT) domain M5598_06805 PF03553 Na+/H+ antiporter family M5598_06810 PF00120 Glutamine synthetase, catalytic domain M5598_06815 PF07722 Peptidase C26 M5598_06820 PF01381 Helix-turn-helix M5598_06820 PF07883 Cupin domain M5598_06825 PF00171 Aldehyde dehydrogenase family M5598_06830 PF01266 FAD dependent oxidoreductase M5598_06835 PF00795 Carbon-nitrogen hydrolase M5598_06840 PF04371 Porphyromonas-type peptidyl-arginine deiminase M5598_06845 PF00171 Aldehyde dehydrogenase family M5598_06850 PF00202 Aminotransferase class-III M5598_06855 PF02833 DHHA2 domain M5598_06855 PF01368 DHH family M5598_06860 PF00196 Bacterial regulatory proteins, luxR family M5598_06860 PF00563 EAL domain M5598_06875 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M5598_06880 PF00873 AcrB/AcrD/AcrF family M5598_06895 PF02423 Ornithine cyclodeaminase/mu-crystallin family M5598_06900 PF14031 Putative serine dehydratase domain M5598_06900 PF01168 Alanine racemase, N-terminal domain M5598_06905 PF03466 LysR substrate binding domain M5598_06905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_06915 PF01411 tRNA synthetases class II (A) M5598_06915 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M5598_06915 PF02272 DHHA1 domain M5598_06920 PF12833 Helix-turn-helix domain M5598_06930 PF01047 MarR family M5598_06935 PF04237 YjbR M5598_06955 PF00132 Bacterial transferase hexapeptide (six repeats) M5598_06955 PF12464 Maltose acetyltransferase M5598_06970 PF00672 HAMP domain M5598_06970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_06970 PF00512 His Kinase A (phospho-acceptor) domain M5598_06970 PF01627 Hpt domain M5598_06970 PF00072 Response regulator receiver domain M5598_06970 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M5598_06975 PF00563 EAL domain M5598_06975 PF00990 Diguanylate cyclase, GGDEF domain M5598_06975 PF03707 Bacterial signalling protein N terminal repeat M5598_06990 PF04204 Homoserine O-succinyltransferase M5598_07000 PF13520 Amino acid permease M5598_07005 PF03279 Bacterial lipid A biosynthesis acyltransferase M5598_07010 PF02074 Carboxypeptidase Taq (M32) metallopeptidase M5598_07015 PF01810 LysE type translocator M5598_07025 PF01235 Sodium:alanine symporter family M5598_07050 PF00884 Sulfatase M5598_07055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_07055 PF00512 His Kinase A (phospho-acceptor) domain M5598_07055 PF08521 Two-component sensor kinase N-terminal M5598_07060 PF00072 Response regulator receiver domain M5598_07060 PF00486 Transcriptional regulatory protein, C terminal M5598_07080 PF00501 AMP-binding enzyme M5598_07090 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M5598_07095 PF00528 Binding-protein-dependent transport system inner membrane component M5598_07100 PF00005 ABC transporter M5598_07100 PF00571 CBS domain M5598_07115 PF02028 BCCT, betaine/carnitine/choline family transporter M5598_07120 PF00583 Acetyltransferase (GNAT) family M5598_07125 PF00202 Aminotransferase class-III M5598_07130 PF06339 Ectoine synthase M5598_07135 PF13840 ACT domain M5598_07135 PF00696 Amino acid kinase family M5598_07155 PF00034 Cytochrome c M5598_07155 PF03150 Di-haem cytochrome c peroxidase M5598_07170 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M5598_07185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_07185 PF00989 PAS fold M5598_07185 PF17203 Single cache domain 3 M5598_07185 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain M5598_07190 PF00072 Response regulator receiver domain M5598_07190 PF12431 Transcriptional regulator M5598_07195 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain M5598_07195 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain M5598_07200 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase M5598_07205 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain M5598_07205 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M5598_07225 PF00158 Sigma-54 interaction domain M5598_07225 PF01590 GAF domain M5598_07225 PF02954 Bacterial regulatory protein, Fis family M5598_07230 PF00171 Aldehyde dehydrogenase family M5598_07250 PF12833 Helix-turn-helix domain M5598_07265 PF00263 Bacterial type II and III secretion system protein M5598_07265 PF03958 Bacterial type II/III secretion system short domain M5598_07270 PF16693 Inner membrane component of T3SS, periplasmic domain M5598_07270 PF16697 Inner membrane component of T3SS, cytoplasmic domain M5598_07280 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF M5598_07285 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) M5598_07295 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI M5598_07300 PF01514 Secretory protein of YscJ/FliF family M5598_07310 PF02108 Flagellar assembly protein FliH M5598_07320 PF02661 Fic/DOC family M5598_07345 PF01312 FlhB HrpN YscU SpaS Family M5598_07350 PF01311 Bacterial export proteins, family 1 M5598_07355 PF01313 Bacterial export proteins, family 3 M5598_07360 PF00813 FliP family M5598_07365 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M5598_07380 PF02874 ATP synthase alpha/beta family, beta-barrel domain M5598_07380 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M5598_07380 PF18269 T3SS EscN ATPase C-terminal domain M5598_07385 PF07201 HrpJ-like domain M5598_07390 PF09059 TyeA M5598_07410 PF00771 FHIPEP family M5598_07415 PF09621 Type III secretion system regulator (LcrR) M5598_07420 PF07216 LcrG protein M5598_07425 PF04792 V antigen (LcrV) protein M5598_07430 PF07720 Tetratricopeptide repeat M5598_07440 PF05844 YopD protein M5598_07450 PF01925 Sulfite exporter TauE/SafE M5598_07455 PF01970 Tripartite tricarboxylate transporter TctA family M5598_07485 PF00285 Citrate synthase, C-terminal domain M5598_07490 PF00330 Aconitase family (aconitate hydratase) M5598_07490 PF00694 Aconitase C-terminal domain M5598_07495 PF04303 PrpF protein M5598_07500 PF16177 Acetyl-coenzyme A synthetase N-terminus M5598_07500 PF13193 AMP-binding enzyme C-terminal domain M5598_07500 PF00501 AMP-binding enzyme M5598_07505 PF00583 Acetyltransferase (GNAT) family M5598_07510 PF00089 Trypsin M5598_07525 PF04055 Radical SAM superfamily M5598_07530 PF06508 Queuosine biosynthesis protein QueC M5598_07535 PF00990 Diguanylate cyclase, GGDEF domain M5598_07535 PF17158 Membrane-associated sensor, integral membrane domain M5598_07545 PF05736 OprF membrane domain M5598_07545 PF00691 OmpA family M5598_07565 PF00691 OmpA family M5598_07565 PF05736 OprF membrane domain M5598_07580 PF10672 S-adenosylmethionine-dependent methyltransferase M5598_07580 PF17785 PUA-like domain M5598_07585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M5598_07585 PF00672 HAMP domain M5598_07585 PF02743 Cache domain M5598_07590 PF00708 Acylphosphatase M5598_07595 PF04358 DsrC like protein M5598_07605 PF01027 Inhibitor of apoptosis-promoting Bax1 M5598_07610 PF00005 ABC transporter M5598_07615 PF00528 Binding-protein-dependent transport system inner membrane component M5598_07620 PF00528 Binding-protein-dependent transport system inner membrane component M5598_07625 PF00497 Bacterial extracellular solute-binding proteins, family 3 M5598_07630 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M5598_07630 PF14824 Sirohaem biosynthesis protein central M5598_07630 PF10414 Sirohaem synthase dimerisation region M5598_07635 PF04461 Protein of unknown function (DUF520) M5598_07640 PF00793 DAHP synthetase I family M5598_07660 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF M5598_07660 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF M5598_07660 PF01189 16S rRNA methyltransferase RsmB/F M5598_07665 PF02470 MlaD protein M5598_07670 PF04403 Paraquat-inducible protein A M5598_07675 PF00005 ABC transporter M5598_07675 PF00664 ABC transporter transmembrane region M5598_07680 PF13185 GAF domain M5598_07685 PF17516 ProQ C-terminal domain M5598_07685 PF04352 ProQ/FINO family M5598_07690 PF11818 C-terminal domain of tail specific protease (DUF3340) M5598_07690 PF00595 PDZ domain M5598_07690 PF03572 Peptidase family S41 M5598_07690 PF17804 Tail specific protease N-terminal domain M5598_07700 PF01433 Peptidase family M1 domain M5598_07700 PF17432 Domain of unknown function (DUF3458_C) ARM repeats M5598_07700 PF11940 Domain of unknown function (DUF3458) Ig-like fold M5598_07710 PF05088 Bacterial NAD-glutamate dehydrogenase M5598_07715 PF01180 Dihydroorotate dehydrogenase M5598_07720 PF07126 Cell-division protein ZapC M5598_07725 PF01170 Putative RNA methylase family UPF0020 M5598_07725 PF10672 S-adenosylmethionine-dependent methyltransferase M5598_07725 PF02926 THUMP domain M5598_07735 PF00005 ABC transporter M5598_07735 PF12848 ABC transporter M5598_07735 PF16326 ABC transporter C-terminal domain M5598_07745 PF04957 Ribosome modulation factor M5598_07750 PF07977 FabA-like domain M5598_07755 PF05362 Lon protease (S16) C-terminal proteolytic domain M5598_07755 PF13654 AAA domain M5598_07760 PF06303 MatP N-terminal domain M5598_07760 PF17414 MatP C-terminal ribbon-helix-helix domain M5598_07780 PF00512 His Kinase A (phospho-acceptor) domain M5598_07780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_07780 PF09308 LuxQ, periplasmic M5598_07780 PF00072 Response regulator receiver domain M5598_07795 PF00115 Cytochrome C and Quinol oxidase polypeptide I M5598_07810 PF13442 Cytochrome C oxidase, cbb3-type, subunit III M5598_07810 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP M5598_07820 PF00403 Heavy-metal-associated domain M5598_07835 PF00027 Cyclic nucleotide-binding domain M5598_07835 PF13545 Crp-like helix-turn-helix domain M5598_07840 PF00582 Universal stress protein family M5598_07845 PF01171 PP-loop family M5598_07865 PF00005 ABC transporter M5598_07865 PF08402 TOBE domain M5598_07870 PF00528 Binding-protein-dependent transport system inner membrane component M5598_07875 PF00528 Binding-protein-dependent transport system inner membrane component M5598_07880 PF13416 Bacterial extracellular solute-binding protein M5598_07885 PF13416 Bacterial extracellular solute-binding protein M5598_07890 PF02146 Sir2 family M5598_07900 PF00909 Ammonium Transporter Family M5598_07940 PF05593 RHS Repeat M5598_07940 PF03527 RHS protein M5598_07955 PF13247 4Fe-4S dicluster domain M5598_07960 PF01568 Molydopterin dinucleotide binding domain M5598_07960 PF00384 Molybdopterin oxidoreductase M5598_07960 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M5598_07970 PF02613 Nitrate reductase delta subunit M5598_07990 PF02634 FdhD/NarQ family M5598_07995 PF12848 ABC transporter M5598_07995 PF00005 ABC transporter M5598_08000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_08000 PF00512 His Kinase A (phospho-acceptor) domain M5598_08005 PF02954 Bacterial regulatory protein, Fis family M5598_08005 PF00072 Response regulator receiver domain M5598_08005 PF00158 Sigma-54 interaction domain M5598_08010 PF12849 PBP superfamily domain M5598_08015 PF00528 Binding-protein-dependent transport system inner membrane component M5598_08020 PF00005 ABC transporter M5598_08020 PF08402 TOBE domain M5598_08025 PF12804 MobA-like NTP transferase domain M5598_08030 PF03453 MoeA N-terminal region (domain I and II) M5598_08030 PF00994 Probable molybdopterin binding domain M5598_08030 PF03454 MoeA C-terminal region (domain IV) M5598_08040 PF00534 Glycosyl transferases group 1 M5598_08040 PF13439 Glycosyltransferase Family 4 M5598_08045 PF00535 Glycosyl transferase family 2 M5598_08050 PF02397 Bacterial sugar transferase M5598_08060 PF02028 BCCT, betaine/carnitine/choline family transporter M5598_08075 PF04408 Helicase associated domain (HA2) M5598_08075 PF00271 Helicase conserved C-terminal domain M5598_08075 PF00270 DEAD/DEAH box helicase M5598_08075 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold M5598_08075 PF11898 Domain of unknown function (DUF3418) M5598_08080 PF02525 Flavodoxin-like fold M5598_08090 PF02613 Nitrate reductase delta subunit M5598_08095 PF04976 DMSO reductase anchor subunit (DmsC) M5598_08100 PF12800 4Fe-4S binding domain M5598_08100 PF13247 4Fe-4S dicluster domain M5598_08105 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M5598_08105 PF00384 Molybdopterin oxidoreductase M5598_08105 PF01568 Molydopterin dinucleotide binding domain M5598_08135 PF17158 Membrane-associated sensor, integral membrane domain M5598_08135 PF00990 Diguanylate cyclase, GGDEF domain M5598_08145 PF00012 Hsp70 protein M5598_08150 PF00012 Hsp70 protein M5598_08175 PF00005 ABC transporter M5598_08175 PF00664 ABC transporter transmembrane region M5598_08180 PF00664 ABC transporter transmembrane region M5598_08180 PF00005 ABC transporter M5598_08200 PF03222 Tryptophan/tyrosine permease family M5598_08205 PF00465 Iron-containing alcohol dehydrogenase M5598_08210 PF01966 HD domain M5598_08220 PF03741 Integral membrane protein TerC family M5598_08230 PF04055 Radical SAM superfamily M5598_08235 PF11230 Protein of unknown function (DUF3029) M5598_08240 PF01810 LysE type translocator M5598_08245 PF11871 Domain of unknown function (DUF3391) M5598_08245 PF01966 HD domain M5598_08250 PF00563 EAL domain M5598_08250 PF00990 Diguanylate cyclase, GGDEF domain M5598_08250 PF03707 Bacterial signalling protein N terminal repeat M5598_08255 PF00158 Sigma-54 interaction domain M5598_08255 PF02954 Bacterial regulatory protein, Fis family M5598_08255 PF00072 Response regulator receiver domain M5598_08260 PF00497 Bacterial extracellular solute-binding proteins, family 3 M5598_08260 PF00512 His Kinase A (phospho-acceptor) domain M5598_08260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_08265 PF00939 Sodium:sulfate symporter transmembrane region M5598_08270 PF00583 Acetyltransferase (GNAT) family M5598_08280 PF00300 Histidine phosphatase superfamily (branch 1) M5598_08295 PF00480 ROK family M5598_08300 PF03942 DTW domain M5598_08335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M5598_08335 PF17202 Single cache domain 3 M5598_08335 PF00672 HAMP domain M5598_08340 PF00877 NlpC/P60 family M5598_08350 PF00990 Diguanylate cyclase, GGDEF domain M5598_08350 PF05230 MASE2 domain M5598_08355 PF00072 Response regulator receiver domain M5598_08355 PF01339 CheB methylesterase M5598_08360 PF03881 Fructosamine kinase M5598_08370 PF00677 Lumazine binding domain M5598_08375 PF01554 MatE M5598_08385 PF01068 ATP dependent DNA ligase domain M5598_08385 PF14743 DNA ligase OB-like domain M5598_08390 PF01740 STAS domain M5598_08400 PF02563 Polysaccharide biosynthesis/export protein M5598_08400 PF10531 SLBB domain M5598_08415 PF02954 Bacterial regulatory protein, Fis family M5598_08415 PF00158 Sigma-54 interaction domain M5598_08415 PF00072 Response regulator receiver domain M5598_08420 PF13439 Glycosyltransferase Family 4 M5598_08420 PF00534 Glycosyl transferases group 1 M5598_08425 PF13439 Glycosyltransferase Family 4 M5598_08425 PF00534 Glycosyl transferases group 1 M5598_08470 PF01321 Creatinase/Prolidase N-terminal domain M5598_08470 PF00557 Metallopeptidase family M24 M5598_08480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_08480 PF03466 LysR substrate binding domain M5598_08495 PF08543 Phosphomethylpyrimidine kinase M5598_08500 PF00155 Aminotransferase class I and II M5598_08505 PF06826 Predicted Permease Membrane Region M5598_08505 PF02080 TrkA-C domain M5598_08515 PF13533 Biotin-lipoyl like M5598_08530 PF00135 Carboxylesterase family M5598_08535 PF13091 PLD-like domain M5598_08540 PF01103 Surface antigen M5598_08540 PF17243 POTRA domain TamA domain 1 M5598_08640 PF00465 Iron-containing alcohol dehydrogenase M5598_08645 PF00356 Bacterial regulatory proteins, lacI family M5598_08645 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M5598_08660 PF07702 UTRA domain M5598_08660 PF00392 Bacterial regulatory proteins, gntR family M5598_08665 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M5598_08665 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M5598_08665 PF02378 Phosphotransferase system, EIIC M5598_08670 PF07748 Glycosyl hydrolases family 38 C-terminal domain M5598_08670 PF01074 Glycosyl hydrolases family 38 N-terminal domain M5598_08670 PF09261 Alpha mannosidase middle domain M5598_08675 PF02595 Glycerate kinase family M5598_08680 PF01238 Phosphomannose isomerase type I M5598_08685 PF00356 Bacterial regulatory proteins, lacI family M5598_08695 PF16875 Glycosyl hydrolase family 36 N-terminal domain M5598_08695 PF16874 Glycosyl hydrolase family 36 C-terminal domain M5598_08700 PF02264 LamB porin M5598_08710 PF02837 Glycosyl hydrolases family 2, sugar binding domain M5598_08710 PF02836 Glycosyl hydrolases family 2, TIM barrel domain M5598_08710 PF00703 Glycosyl hydrolases family 2 M5598_08710 PF02929 Beta galactosidase small chain M5598_08710 PF16353 Domain of unknown function(DUF4981) M5598_08715 PF00356 Bacterial regulatory proteins, lacI family M5598_08720 PF00356 Bacterial regulatory proteins, lacI family M5598_08725 PF01263 Aldose 1-epimerase M5598_08730 PF00288 GHMP kinases N terminal domain M5598_08730 PF10509 Galactokinase galactose-binding signature M5598_08730 PF08544 GHMP kinases C terminal M5598_08780 PF13508 Acetyltransferase (GNAT) domain M5598_08850 PF17676 LD-carboxypeptidase C-terminal domain M5598_08850 PF02016 LD-carboxypeptidase N-terminal domain M5598_09010 PF04463 Protein of unknown function (DUF523) M5598_09225 PF01810 LysE type translocator M5598_09595 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M5598_09660 PF01610 Transposase M5598_09660 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 M5598_09660 PF13542 Helix-turn-helix domain of transposase family ISL3 M5598_09700 PF00589 Phage integrase family M5598_09700 PF13495 Phage integrase, N-terminal SAM-like domain M5598_09715 PF13302 Acetyltransferase (GNAT) domain M5598_09720 PF18024 Helix-turn-helix domain M5598_09720 PF00158 Sigma-54 interaction domain M5598_09725 PF05128 Domain of unknown function (DUF697) M5598_09730 PF04317 YcjX-like family, DUF463 M5598_09745 PF00425 chorismate binding enzyme M5598_09745 PF04715 Anthranilate synthase component I, N terminal region M5598_09750 PF00072 Response regulator receiver domain M5598_09750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_09750 PF00512 His Kinase A (phospho-acceptor) domain M5598_09750 PF09308 LuxQ, periplasmic M5598_09760 PF00293 NUDIX domain M5598_09765 PF03222 Tryptophan/tyrosine permease family M5598_09770 PF03315 Serine dehydratase beta chain M5598_09770 PF03313 Serine dehydratase alpha chain M5598_09775 PF00563 EAL domain M5598_09775 PF04940 Sensors of blue-light using FAD M5598_09785 PF01242 6-pyruvoyl tetrahydropterin synthase M5598_09795 PF00313 'Cold-shock' DNA-binding domain M5598_09800 PF08206 Ribonuclease B OB domain M5598_09800 PF00575 S1 RNA binding domain M5598_09800 PF00773 RNB domain M5598_09800 PF17876 Cold shock domain M5598_09800 PF08461 Ribonuclease R winged-helix domain M5598_09820 PF02743 Cache domain M5598_09820 PF00672 HAMP domain M5598_09820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M5598_09825 PF00152 tRNA synthetases class II (D, K and N) M5598_09825 PF01336 OB-fold nucleic acid binding domain M5598_09835 PF00392 Bacterial regulatory proteins, gntR family M5598_09835 PF00155 Aminotransferase class I and II M5598_09850 PF00155 Aminotransferase class I and II M5598_09870 PF00672 HAMP domain M5598_09870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M5598_09875 PF02028 BCCT, betaine/carnitine/choline family transporter M5598_09880 PF01047 MarR family M5598_09885 PF00196 Bacterial regulatory proteins, luxR family M5598_09885 PF00072 Response regulator receiver domain M5598_09890 PF17200 Single Cache domain 2 M5598_09890 PF07730 Histidine kinase M5598_09895 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component M5598_09905 PF03480 Bacterial extracellular solute-binding protein, family 7 M5598_09920 PF00753 Metallo-beta-lactamase superfamily M5598_09925 PF05951 Bacterial protein of unknown function (DUF882) M5598_09930 PF01471 Putative peptidoglycan binding domain M5598_09930 PF03734 L,D-transpeptidase catalytic domain M5598_09955 PF00925 GTP cyclohydrolase II M5598_09965 PF03918 Cytochrome C biogenesis protein M5598_09970 PF08534 Redoxin M5598_09975 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal M5598_09975 PF01578 Cytochrome C assembly protein M5598_09980 PF03916 Polysulphide reductase, NrfD M5598_09985 PF13247 4Fe-4S dicluster domain M5598_09995 PF02335 Cytochrome c552 M5598_10010 PF03989 DNA gyrase C-terminal domain, beta-propeller M5598_10010 PF00521 DNA gyrase/topoisomerase IV, subunit A M5598_10020 PF00317 Ribonucleotide reductase, all-alpha domain M5598_10020 PF03477 ATP cone domain M5598_10020 PF02867 Ribonucleotide reductase, barrel domain M5598_10025 PF00268 Ribonucleotide reductase, small chain M5598_10035 PF00994 Probable molybdopterin binding domain M5598_10050 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain M5598_10055 PF03435 Saccharopine dehydrogenase NADP binding domain M5598_10055 PF16653 Saccharopine dehydrogenase C-terminal domain M5598_10060 PF00202 Aminotransferase class-III M5598_10085 PF01066 CDP-alcohol phosphatidyltransferase M5598_10090 PF01541 GIY-YIG catalytic domain M5598_10090 PF02151 UvrB/uvrC motif M5598_10090 PF08459 UvrC Helix-hairpin-helix N-terminal M5598_10095 PF00072 Response regulator receiver domain M5598_10095 PF00196 Bacterial regulatory proteins, luxR family M5598_10100 PF03104 DNA polymerase family B, exonuclease domain M5598_10100 PF00136 DNA polymerase family B M5598_10110 PF01132 Elongation factor P (EF-P) OB domain M5598_10110 PF08207 Elongation factor P (EF-P) KOW-like domain M5598_10110 PF09285 Elongation factor P, C-terminal M5598_10115 PF04269 Protein of unknown function, DUF440 M5598_10120 PF00849 RNA pseudouridylate synthase M5598_10120 PF01479 S4 domain M5598_10130 PF01300 Telomere recombination M5598_10135 PF02811 PHP domain M5598_10140 PF08056 Tryptophan operon leader peptide M5598_10145 PF00425 chorismate binding enzyme M5598_10145 PF04715 Anthranilate synthase component I, N terminal region M5598_10150 PF00117 Glutamine amidotransferase class-I M5598_10155 PF00591 Glycosyl transferase family, a/b domain M5598_10155 PF02885 Glycosyl transferase family, helical bundle domain M5598_10160 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase M5598_10160 PF00218 Indole-3-glycerol phosphate synthase M5598_10165 PF00291 Pyridoxal-phosphate dependent enzyme M5598_10170 PF00290 Tryptophan synthase alpha chain M5598_10175 PF00027 Cyclic nucleotide-binding domain M5598_10175 PF13545 Crp-like helix-turn-helix domain M5598_10180 PF13193 AMP-binding enzyme C-terminal domain M5598_10180 PF00501 AMP-binding enzyme M5598_10185 PF00375 Sodium:dicarboxylate symporter family M5598_10190 PF17327 Acyl homoserine lactone synthase M5598_10195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_10195 PF00072 Response regulator receiver domain M5598_10205 PF04279 Intracellular septation protein A M5598_10210 PF03061 Thioesterase superfamily M5598_10215 PF03795 YCII-related domain M5598_10225 PF08267 Cobalamin-independent synthase, N-terminal domain M5598_10225 PF01717 Cobalamin-independent synthase, Catalytic domain M5598_10230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_10230 PF03466 LysR substrate binding domain M5598_10245 PF00989 PAS fold M5598_10245 PF00990 Diguanylate cyclase, GGDEF domain M5598_10245 PF00563 EAL domain M5598_10245 PF01590 GAF domain M5598_10250 PF11842 Domain of unknown function (DUF3362) M5598_10250 PF04055 Radical SAM superfamily M5598_10250 PF08497 Radical SAM N-terminal M5598_10255 PF00672 HAMP domain M5598_10255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M5598_10260 PF00072 Response regulator receiver domain M5598_10260 PF00486 Transcriptional regulatory protein, C terminal M5598_10265 PF00512 His Kinase A (phospho-acceptor) domain M5598_10265 PF00672 HAMP domain M5598_10265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_10285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_10285 PF03466 LysR substrate binding domain M5598_10290 PF00529 HlyD membrane-fusion protein of T1SS M5598_10290 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M5598_10310 PF00265 Thymidine kinase M5598_10315 PF01406 tRNA synthetases class I (C) catalytic domain M5598_10315 PF09190 DALR domain M5598_10320 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M5598_10325 PF00149 Calcineurin-like phosphoesterase M5598_10330 PF00563 EAL domain M5598_10330 PF08668 HDOD domain M5598_10335 PF02810 SEC-C motif M5598_10340 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase M5598_10340 PF01502 Phosphoribosyl-AMP cyclohydrolase M5598_10345 PF00977 Histidine biosynthesis protein M5598_10350 PF00977 Histidine biosynthesis protein M5598_10355 PF00117 Glutamine amidotransferase class-I M5598_10360 PF00475 Imidazoleglycerol-phosphate dehydratase M5598_10360 PF08645 Polynucleotide kinase 3 phosphatase M5598_10365 PF00155 Aminotransferase class I and II M5598_10370 PF00815 Histidinol dehydrogenase M5598_10375 PF01634 ATP phosphoribosyltransferase M5598_10375 PF08029 HisG, C-terminal domain M5598_10380 PF00072 Response regulator receiver domain M5598_10380 PF00158 Sigma-54 interaction domain M5598_10380 PF02954 Bacterial regulatory protein, Fis family M5598_10390 PF03553 Na+/H+ antiporter family M5598_10395 PF00816 H-NS histone family M5598_10400 PF00294 pfkB family carbohydrate kinase M5598_10415 PF04356 Protein of unknown function (DUF489) M5598_10420 PF08328 Adenylosuccinate lyase C-terminal M5598_10420 PF00206 Lyase M5598_10455 PF00106 short chain dehydrogenase M5598_10465 PF01435 Peptidase family M48 M5598_10480 PF08241 Methyltransferase domain M5598_10485 PF00155 Aminotransferase class I and II M5598_10490 PF04055 Radical SAM superfamily M5598_10490 PF06968 Biotin and Thiamin Synthesis associated domain M5598_10495 PF00202 Aminotransferase class-III M5598_10500 PF01258 Prokaryotic dksA/traR C4-type zinc finger M5598_10515 PF02403 Seryl-tRNA synthetase N-terminal domain M5598_10515 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M5598_10520 PF16193 AAA C-terminal domain M5598_10520 PF00004 ATPase family associated with various cellular activities (AAA) M5598_10520 PF12002 MgsA AAA+ ATPase C terminal M5598_10525 PF03548 Outer membrane lipoprotein carrier protein LolA M5598_10530 PF01580 FtsK/SpoIIIE family M5598_10530 PF09397 Ftsk gamma domain M5598_10530 PF13491 4TM region of DNA translocase FtsK/SpoIIIE M5598_10530 PF17854 FtsK alpha domain M5598_10535 PF01037 Lrp/AsnC ligand binding domain M5598_10540 PF05222 Alanine dehydrogenase/PNT, N-terminal domain M5598_10540 PF01262 Alanine dehydrogenase/PNT, C-terminal domain M5598_10550 PF03466 LysR substrate binding domain M5598_10550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_10560 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) M5598_10565 PF03372 Endonuclease/Exonuclease/phosphatase family M5598_10590 PF00873 AcrB/AcrD/AcrF family M5598_10595 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M5598_10595 PF00529 HlyD membrane-fusion protein of T1SS M5598_10600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M5598_10600 PF00672 HAMP domain M5598_10600 PF12729 Four helix bundle sensory module for signal transduction M5598_10610 PF06610 L-alanine exporter M5598_10615 PF09308 LuxQ, periplasmic M5598_10615 PF00512 His Kinase A (phospho-acceptor) domain M5598_10615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_10615 PF00072 Response regulator receiver domain M5598_10625 PF03738 Glutathionylspermidine synthase preATP-grasp M5598_10635 PF03994 Domain of Unknown Function (DUF350) M5598_10645 PF02445 Quinolinate synthetase A protein M5598_10650 PF00990 Diguanylate cyclase, GGDEF domain M5598_10650 PF00072 Response regulator receiver domain M5598_10655 PF02903 Alpha amylase, N-terminal ig-like domain M5598_10655 PF00128 Alpha amylase, catalytic domain M5598_10660 PF00005 ABC transporter M5598_10665 PF02653 Branched-chain amino acid transport system / permease component M5598_10675 PF04217 Protein of unknown function, DUF412 M5598_10680 PF00871 Acetokinase family M5598_10685 PF01515 Phosphate acetyl/butaryl transferase M5598_10685 PF07085 DRTGG domain M5598_10690 PF13194 Domain of unknown function (DUF4010) M5598_10700 PF13409 Glutathione S-transferase, N-terminal domain M5598_10705 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M5598_10705 PF00005 ABC transporter M5598_10710 PF00005 ABC transporter M5598_10710 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M5598_10715 PF00528 Binding-protein-dependent transport system inner membrane component M5598_10715 PF12911 N-terminal TM domain of oligopeptide transport permease C M5598_10720 PF00528 Binding-protein-dependent transport system inner membrane component M5598_10725 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M5598_10730 PF02391 MoaE protein M5598_10735 PF02597 ThiS family M5598_10740 PF01967 MoaC family M5598_10745 PF00994 Probable molybdopterin binding domain M5598_10750 PF06463 Molybdenum Cofactor Synthesis C M5598_10750 PF04055 Radical SAM superfamily M5598_10755 PF01933 Uncharacterised protein family UPF0052 M5598_10760 PF01627 Hpt domain M5598_10765 PF00158 Sigma-54 interaction domain M5598_10765 PF00072 Response regulator receiver domain M5598_10765 PF02954 Bacterial regulatory protein, Fis family M5598_10770 PF02151 UvrB/uvrC motif M5598_10770 PF17757 UvrB interaction domain M5598_10770 PF12344 Ultra-violet resistance protein B M5598_10770 PF00271 Helicase conserved C-terminal domain M5598_10770 PF04851 Type III restriction enzyme, res subunit M5598_10785 PF00528 Binding-protein-dependent transport system inner membrane component M5598_10790 PF00528 Binding-protein-dependent transport system inner membrane component M5598_10795 PF00497 Bacterial extracellular solute-binding proteins, family 3 M5598_10800 PF00005 ABC transporter M5598_10815 PF01228 Glycine radical M5598_10815 PF02901 Pyruvate formate lyase-like M5598_10825 PF04055 Radical SAM superfamily M5598_10835 PF03887 YfbU domain M5598_10840 PF08298 PrkA AAA domain M5598_10840 PF06798 PrkA serine protein kinase C-terminal domain M5598_10845 PF04285 Protein of unknown function (DUF444) M5598_10850 PF04293 SpoVR like protein M5598_10855 PF02348 Cytidylyltransferase M5598_10860 PF03966 Trm112p-like protein M5598_10865 PF02606 Tetraacyldisaccharide-1-P 4'-kinase M5598_10870 PF00005 ABC transporter M5598_10870 PF00664 ABC transporter transmembrane region M5598_10875 PF13567 Domain of unknown function (DUF4131) M5598_10875 PF00753 Metallo-beta-lactamase superfamily M5598_10875 PF03772 Competence protein M5598_10885 PF02687 FtsX-like permease family M5598_10885 PF12704 MacB-like periplasmic core domain M5598_10890 PF00005 ABC transporter M5598_10895 PF12704 MacB-like periplasmic core domain M5598_10895 PF02687 FtsX-like permease family M5598_10905 PF02559 CarD-like/TRCF domain M5598_10905 PF00271 Helicase conserved C-terminal domain M5598_10905 PF17757 UvrB interaction domain M5598_10905 PF03461 TRCF domain M5598_10905 PF00270 DEAD/DEAH box helicase M5598_10925 PF07992 Pyridine nucleotide-disulphide oxidoreductase M5598_10930 PF05728 Uncharacterised protein family (UPF0227) M5598_10940 PF13036 Peptidoglycan-synthase activator LpoB M5598_10940 PF08139 Prokaryotic membrane lipoprotein lipid attachment site M5598_10955 PF01230 HIT domain M5598_10960 PF00672 HAMP domain M5598_10960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M5598_10970 PF01048 Phosphorylase superfamily M5598_10975 PF00403 Heavy-metal-associated domain M5598_10980 PF00571 CBS domain M5598_10980 PF00478 IMP dehydrogenase / GMP reductase domain M5598_10990 PF11953 Domain of unknown function (DUF3470) M5598_10990 PF00037 4Fe-4S binding domain M5598_10995 PF08032 RNA 2'-O ribose methyltransferase substrate binding M5598_10995 PF00588 SpoU rRNA Methylase family M5598_11005 PF17152 Periplasmic sensor domain M5598_11005 PF00990 Diguanylate cyclase, GGDEF domain M5598_11015 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M5598_11020 PF09619 Type III secretion system lipoprotein chaperone (YscW) M5598_11035 PF13404 AsnC-type helix-turn-helix domain M5598_11035 PF01037 Lrp/AsnC ligand binding domain M5598_11040 PF00291 Pyridoxal-phosphate dependent enzyme M5598_11060 PF00873 AcrB/AcrD/AcrF family M5598_11065 PF13533 Biotin-lipoyl like M5598_11110 PF07690 Major Facilitator Superfamily M5598_11115 PF03601 Conserved hypothetical protein 698 M5598_11125 PF00501 AMP-binding enzyme M5598_11125 PF13193 AMP-binding enzyme C-terminal domain M5598_11130 PF13378 Enolase C-terminal domain-like M5598_11135 PF00378 Enoyl-CoA hydratase/isomerase M5598_11140 PF12697 Alpha/beta hydrolase family M5598_11145 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M5598_11145 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M5598_11145 PF16582 Middle domain of thiamine pyrophosphate M5598_11150 PF00425 chorismate binding enzyme M5598_11155 PF00155 Aminotransferase class I and II M5598_11165 PF01966 HD domain M5598_11165 PF13286 Phosphohydrolase-associated domain M5598_11185 PF13145 PPIC-type PPIASE domain M5598_11190 PF00216 Bacterial DNA-binding protein M5598_11195 PF00004 ATPase family associated with various cellular activities (AAA) M5598_11195 PF05362 Lon protease (S16) C-terminal proteolytic domain M5598_11195 PF02190 ATP-dependent protease La (LON) substrate-binding domain M5598_11200 PF07724 AAA domain (Cdc48 subfamily) M5598_11200 PF10431 C-terminal, D2-small domain, of ClpB protein M5598_11200 PF06689 ClpX C4-type zinc finger M5598_11205 PF00574 Clp protease M5598_11210 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M5598_11210 PF05698 Bacterial trigger factor protein (TF) C-terminus M5598_11210 PF05697 Bacterial trigger factor protein (TF) M5598_11220 PF02743 Cache domain M5598_11220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_11220 PF00512 His Kinase A (phospho-acceptor) domain M5598_11225 PF00158 Sigma-54 interaction domain M5598_11225 PF00072 Response regulator receiver domain M5598_11225 PF02954 Bacterial regulatory protein, Fis family M5598_11235 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component M5598_11240 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component M5598_11245 PF03480 Bacterial extracellular solute-binding protein, family 7 M5598_11250 PF02696 Uncharacterized ACR, YdiU/UPF0061 family M5598_11265 PF02386 Cation transport protein M5598_11270 PF02254 TrkA-N domain M5598_11270 PF02080 TrkA-C domain M5598_11275 PF00271 Helicase conserved C-terminal domain M5598_11275 PF00270 DEAD/DEAH box helicase M5598_11280 PF00571 CBS domain M5598_11280 PF01595 Cyclin M transmembrane N-terminal domain M5598_11280 PF03471 Transporter associated domain M5598_11290 PF04820 Tryptophan halogenase M5598_11315 PF00550 Phosphopantetheine attachment site M5598_11320 PF00550 Phosphopantetheine attachment site M5598_11335 PF07977 FabA-like domain M5598_11340 PF00535 Glycosyl transferase family 2 M5598_11345 PF00221 Aromatic amino acid lyase M5598_11370 PF00109 Beta-ketoacyl synthase, N-terminal domain M5598_11370 PF02801 Beta-ketoacyl synthase, C-terminal domain M5598_11375 PF07977 FabA-like domain M5598_11385 PF02801 Beta-ketoacyl synthase, C-terminal domain M5598_11385 PF00109 Beta-ketoacyl synthase, N-terminal domain M5598_11400 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain M5598_11400 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain M5598_11405 PF07670 Nucleoside recognition M5598_11405 PF07662 Na+ dependent nucleoside transporter C-terminus M5598_11405 PF01773 Na+ dependent nucleoside transporter N-terminus M5598_11410 PF03466 LysR substrate binding domain M5598_11410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_11415 PF13406 Transglycosylase SLT domain M5598_11420 PF05166 YcgL domain M5598_11425 PF05209 Septum formation inhibitor MinC, N-terminal domain M5598_11425 PF03775 Septum formation inhibitor MinC, C-terminal domain M5598_11430 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain M5598_11435 PF03776 Septum formation topological specificity factor MinE M5598_11440 PF00570 HRDC domain M5598_11440 PF01612 3'-5' exonuclease M5598_11445 PF13193 AMP-binding enzyme C-terminal domain M5598_11445 PF00501 AMP-binding enzyme M5598_11450 PF00561 alpha/beta hydrolase fold M5598_11465 PF00814 Glycoprotease family M5598_11470 PF13307 Helicase C-terminal domain M5598_11470 PF04851 Type III restriction enzyme, res subunit M5598_11475 PF01842 ACT domain M5598_11475 PF00551 Formyl transferase M5598_11480 PF06185 YecM protein M5598_11485 PF05746 DALR anticodon binding domain M5598_11485 PF03485 Arginyl tRNA synthetase N terminal domain M5598_11485 PF00750 tRNA synthetases class I (R) M5598_11500 PF07670 Nucleoside recognition M5598_11500 PF02421 Ferrous iron transport protein B M5598_11500 PF17910 FeoB cytosolic helical domain M5598_11500 PF07664 Ferrous iron transport protein B C terminus M5598_11505 PF04023 FeoA domain M5598_11510 PF12833 Helix-turn-helix domain M5598_11510 PF02311 AraC-like ligand binding domain M5598_11515 PF01297 Zinc-uptake complex component A periplasmic M5598_11520 PF00005 ABC transporter M5598_11525 PF00950 ABC 3 transport family M5598_11530 PF13230 Glutamine amidotransferases class-II M5598_11535 PF13580 SIS domain M5598_11540 PF02770 Acyl-CoA dehydrogenase, middle domain M5598_11540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M5598_11540 PF09317 Domain of unknown function (DUF1974) M5598_11540 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M5598_11545 PF01740 STAS domain M5598_11545 PF00916 Sulfate permease family M5598_11555 PF00929 Exonuclease M5598_11560 PF00075 RNase H M5598_11565 PF08241 Methyltransferase domain M5598_11570 PF00753 Metallo-beta-lactamase superfamily M5598_11570 PF16123 Hydroxyacylglutathione hydrolase C-terminus M5598_11575 PF01464 Transglycosylase SLT domain M5598_11575 PF01476 LysM domain M5598_11585 PF03372 Endonuclease/Exonuclease/phosphatase family M5598_11590 PF00543 Nitrogen regulatory protein P-II M5598_11595 PF00034 Cytochrome c M5598_11600 PF01171 PP-loop family M5598_11600 PF09179 TilS substrate binding domain M5598_11600 PF11734 TilS substrate C-terminal domain M5598_11605 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit M5598_11610 PF07733 Bacterial DNA polymerase III alpha NTPase domain M5598_11610 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M5598_11610 PF14579 Helix-hairpin-helix motif M5598_11610 PF02811 PHP domain M5598_11610 PF01336 OB-fold nucleic acid binding domain M5598_11615 PF01351 Ribonuclease HII M5598_11620 PF02684 Lipid-A-disaccharide synthetase M5598_11625 PF00132 Bacterial transferase hexapeptide (six repeats) M5598_11625 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 M5598_11630 PF07977 FabA-like domain M5598_11635 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD M5598_11635 PF00132 Bacterial transferase hexapeptide (six repeats) M5598_11640 PF03938 Outer membrane protein (OmpH-like) M5598_11645 PF01103 Surface antigen M5598_11645 PF07244 Surface antigen variable number repeat M5598_11650 PF17820 PDZ domain M5598_11650 PF02163 Peptidase family M50 M5598_11655 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain M5598_11655 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase M5598_11655 PF13288 DXP reductoisomerase C-terminal domain M5598_11665 PF01255 Putative undecaprenyl diphosphate synthase M5598_11670 PF01765 Ribosome recycling factor M5598_11675 PF00696 Amino acid kinase family M5598_11680 PF00889 Elongation factor TS M5598_11685 PF00318 Ribosomal protein S2 M5598_11690 PF00557 Metallopeptidase family M24 M5598_11695 PF01842 ACT domain M5598_11695 PF08335 GlnD PII-uridylyltransferase M5598_11695 PF01966 HD domain M5598_11695 PF01909 Nucleotidyltransferase domain M5598_11700 PF11944 Protein of unknown function (DUF3461) M5598_11705 PF00849 RNA pseudouridylate synthase M5598_11710 PF04287 tRNA pseudouridine synthase C M5598_11735 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 M5598_11740 PF03806 AbgT putative transporter family M5598_11745 PF00444 Ribosomal protein L36 M5598_11750 PF01197 Ribosomal protein L31 M5598_11755 PF01980 tRNA-methyltransferase O M5598_11755 PF18389 TrmO C-terminal domain M5598_11760 PF04073 Aminoacyl-tRNA editing domain M5598_11760 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M5598_11760 PF03129 Anticodon binding domain M5598_11770 PF06786 Uncharacterised protein family (UPF0253) M5598_11780 PF00209 Sodium:neurotransmitter symporter family M5598_11795 PF01272 Transcription elongation factor, GreA/GreB, C-term M5598_11795 PF03449 Transcription elongation factor, N-terminal M5598_11800 PF00270 DEAD/DEAH box helicase M5598_11800 PF00271 Helicase conserved C-terminal domain M5598_11800 PF00570 HRDC domain M5598_11800 PF16124 RecQ zinc-binding M5598_11800 PF09382 RQC domain M5598_11805 PF00817 impB/mucB/samB family M5598_11805 PF11799 impB/mucB/samB family C-terminal domain M5598_11805 PF11798 IMS family HHH motif M5598_11820 PF02424 ApbE family M5598_11825 PF00175 Oxidoreductase NAD-binding domain M5598_11825 PF00970 Oxidoreductase FAD-binding domain M5598_11825 PF00111 2Fe-2S iron-sulfur cluster binding domain M5598_11830 PF02508 Rnf-Nqr subunit, membrane protein M5598_11835 PF02508 Rnf-Nqr subunit, membrane protein M5598_11840 PF04205 FMN-binding domain M5598_11845 PF03116 NQR2, RnfD, RnfE family M5598_11850 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) M5598_11850 PF11973 NQRA C-terminal domain M5598_11855 PF01722 BolA-like protein M5598_11860 PF05175 Methyltransferase small domain M5598_11865 PF03923 Uncharacterized lipoprotein M5598_11865 PF08139 Prokaryotic membrane lipoprotein lipid attachment site M5598_11870 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M5598_11875 PF07690 Major Facilitator Superfamily M5598_11885 PF04542 Sigma-70 region 2 M5598_11885 PF04545 Sigma-70, region 4 M5598_11900 PF03502 Nucleoside-specific channel-forming protein, Tsx M5598_11905 PF08546 Ketopantoate reductase PanE/ApbA C terminal M5598_11905 PF02558 Ketopantoate reductase PanE/ApbA M5598_11910 PF01965 DJ-1/PfpI family M5598_11915 PF00266 Aminotransferase class-V M5598_11920 PF17158 Membrane-associated sensor, integral membrane domain M5598_11920 PF00990 Diguanylate cyclase, GGDEF domain M5598_11930 PF02657 Fe-S metabolism associated domain M5598_11935 PF00899 ThiF family M5598_11940 PF06725 3D domain M5598_11940 PF03562 MltA specific insert domain M5598_11950 PF00583 Acetyltransferase (GNAT) family M5598_11950 PF00696 Amino acid kinase family M5598_11960 PF13538 UvrD-like helicase C-terminal domain M5598_11965 PF12705 PD-(D/E)XK nuclease superfamily M5598_11965 PF13361 UvrD-like helicase C-terminal domain M5598_11965 PF00580 UvrD/REP helicase N-terminal domain M5598_11970 PF17946 RecC C-terminal domain M5598_11975 PF00884 Sulfatase M5598_11975 PF11893 Domain of unknown function (DUF3413) M5598_11985 PF03466 LysR substrate binding domain M5598_11985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_11990 PF07130 YebG protein M5598_11995 PF14602 Hexapeptide repeat of succinyl-transferase M5598_11995 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle M5598_12000 PF03009 Glycerophosphoryl diester phosphodiesterase family M5598_12005 PF07690 Major Facilitator Superfamily M5598_12010 PF00230 Major intrinsic protein M5598_12015 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M5598_12015 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M5598_12020 PF00455 DeoR C terminal sensor domain M5598_12020 PF08220 DeoR-like helix-turn-helix domain M5598_12025 PF01266 FAD dependent oxidoreductase M5598_12025 PF16901 C-terminal domain of alpha-glycerophosphate oxidase M5598_12030 PF01544 CorA-like Mg2+ transporter protein M5598_12045 PF01588 Putative tRNA binding domain M5598_12050 PF00356 Bacterial regulatory proteins, lacI family M5598_12065 PF00356 Bacterial regulatory proteins, lacI family M5598_12070 PF01263 Aldose 1-epimerase M5598_12075 PF08544 GHMP kinases C terminal M5598_12075 PF00288 GHMP kinases N terminal domain M5598_12075 PF10509 Galactokinase galactose-binding signature M5598_12080 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain M5598_12080 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain M5598_12085 PF16363 GDP-mannose 4,6 dehydratase M5598_12090 PF00356 Bacterial regulatory proteins, lacI family M5598_12095 PF02929 Beta galactosidase small chain M5598_12095 PF16353 Domain of unknown function(DUF4981) M5598_12095 PF00703 Glycosyl hydrolases family 2 M5598_12095 PF02836 Glycosyl hydrolases family 2, TIM barrel domain M5598_12095 PF02837 Glycosyl hydrolases family 2, sugar binding domain M5598_12100 PF04074 YhcH/YjgK/YiaL M5598_12105 PF13520 Amino acid permease M5598_12110 PF03466 LysR substrate binding domain M5598_12110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_12140 PF00437 Type II/IV secretion system protein M5598_12170 PF04972 BON domain M5598_12170 PF13629 Pilus formation protein N terminal region M5598_12170 PF00263 Bacterial type II and III secretion system protein M5598_12195 PF12833 Helix-turn-helix domain M5598_12195 PF02805 Metal binding domain of Ada M5598_12200 PF00501 AMP-binding enzyme M5598_12210 PF03466 LysR substrate binding domain M5598_12210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_12215 PF00679 Elongation factor G C-terminus M5598_12215 PF14492 Elongation Factor G, domain II M5598_12215 PF03764 Elongation factor G, domain IV M5598_12215 PF00009 Elongation factor Tu GTP binding domain M5598_12215 PF03144 Elongation factor Tu domain 2 M5598_12220 PF18073 Rubredoxin metal binding domain M5598_12230 PF18429 Domain of unknown function (DUF5609) M5598_12240 PF01048 Phosphorylase superfamily M5598_12245 PF01676 Metalloenzyme superfamily M5598_12250 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain M5598_12250 PF00591 Glycosyl transferase family, a/b domain M5598_12250 PF02885 Glycosyl transferase family, helical bundle domain M5598_12255 PF01791 DeoC/LacD family aldolase M5598_12260 PF01773 Na+ dependent nucleoside transporter N-terminus M5598_12260 PF07662 Na+ dependent nucleoside transporter C-terminus M5598_12260 PF07670 Nucleoside recognition M5598_12265 PF01026 TatD related DNase M5598_12275 PF03144 Elongation factor Tu domain 2 M5598_12275 PF16658 Class II release factor RF3, C-terminal domain M5598_12275 PF00009 Elongation factor Tu GTP binding domain M5598_12295 PF13508 Acetyltransferase (GNAT) domain M5598_12300 PF02036 SCP-2 sterol transfer family M5598_12305 PF03707 Bacterial signalling protein N terminal repeat M5598_12305 PF00990 Diguanylate cyclase, GGDEF domain M5598_12305 PF00563 EAL domain M5598_12310 PF01136 Peptidase family U32 M5598_12315 PF01136 Peptidase family U32 M5598_12320 PF01554 MatE M5598_12330 PF07719 Tetratricopeptide repeat M5598_12330 PF13181 Tetratricopeptide repeat M5598_12335 PF00013 KH domain M5598_12335 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain M5598_12335 PF00575 S1 RNA binding domain M5598_12335 PF03725 3' exoribonuclease family, domain 2 M5598_12335 PF01138 3' exoribonuclease family, domain 1 M5598_12340 PF00312 Ribosomal protein S15 M5598_12345 PF09157 Pseudouridine synthase II TruB, C-terminal M5598_12345 PF16198 tRNA pseudouridylate synthase B C-terminal domain M5598_12345 PF01509 TruB family pseudouridylate synthase (N terminal domain) M5598_12350 PF02033 Ribosome-binding factor A M5598_12355 PF11987 Translation-initiation factor 2 M5598_12355 PF00009 Elongation factor Tu GTP binding domain M5598_12355 PF04760 Translation initiation factor IF-2, N-terminal region M5598_12355 PF08364 Bacterial translation initiation factor IF-2 associated region M5598_12360 PF13184 NusA-like KH domain M5598_12360 PF00575 S1 RNA binding domain M5598_12360 PF08529 NusA N-terminal domain M5598_12365 PF02576 RimP N-terminal domain M5598_12365 PF17384 RimP C-terminal SH3 domain M5598_12380 PF03840 Preprotein translocase SecG subunit M5598_12385 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M5598_12385 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M5598_12385 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M5598_12385 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M5598_12390 PF00809 Pterin binding enzyme M5598_12395 PF01434 Peptidase family M41 M5598_12395 PF06480 FtsH Extracellular M5598_12395 PF17862 AAA+ lid domain M5598_12395 PF00004 ATPase family associated with various cellular activities (AAA) M5598_12400 PF01728 FtsJ-like methyltransferase M5598_12405 PF01985 CRS1 / YhbY (CRM) domain M5598_12410 PF01272 Transcription elongation factor, GreA/GreB, C-term M5598_12410 PF03449 Transcription elongation factor, N-terminal M5598_12415 PF13609 Gram-negative porin M5598_12420 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family M5598_12430 PF14437 MafB19-like deaminase M5598_12435 PF03806 AbgT putative transporter family M5598_12460 PF00114 Pilin (bacterial filament) M5598_12460 PF07963 Prokaryotic N-terminal methylation motif M5598_12465 PF01556 DnaJ C terminal domain M5598_12465 PF00226 DnaJ domain M5598_12465 PF00684 DnaJ central domain M5598_12470 PF00012 Hsp70 protein M5598_12475 PF00375 Sodium:dicarboxylate symporter family M5598_12480 PF01025 GrpE M5598_12485 PF01513 ATP-NAD kinase M5598_12495 PF02463 RecF/RecN/SMC N terminal domain M5598_12500 PF04355 SmpA / OmlA family M5598_12505 PF03658 RnfH family Ubiquitin M5598_12510 PF03364 Polyketide cyclase / dehydrase and lipid transport M5598_12515 PF01668 SmpB protein M5598_12555 PF05840 Bacteriophage replication gene A protein (GPA) M5598_12595 PF02384 N-6 DNA Methylase M5598_12620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_12620 PF03466 LysR substrate binding domain M5598_12625 PF00583 Acetyltransferase (GNAT) family M5598_12625 PF00795 Carbon-nitrogen hydrolase M5598_12645 PF00202 Aminotransferase class-III M5598_12650 PF01053 Cys/Met metabolism PLP-dependent enzyme M5598_12655 PF07969 Amidohydrolase family M5598_12670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_12670 PF03466 LysR substrate binding domain M5598_12675 PF01266 FAD dependent oxidoreductase M5598_12680 PF01235 Sodium:alanine symporter family M5598_12690 PF01184 GPR1/FUN34/yaaH family M5598_12695 PF06483 Chitinase C M5598_12695 PF00704 Glycosyl hydrolases family 18 M5598_12700 PF03553 Na+/H+ antiporter family M5598_12705 PF02540 NAD synthase M5598_12705 PF00117 Glutamine amidotransferase class-I M5598_12705 PF00958 GMP synthase C terminal domain M5598_12710 PF00478 IMP dehydrogenase / GMP reductase domain M5598_12710 PF00571 CBS domain M5598_12715 PF13742 OB-fold nucleic acid binding domain M5598_12715 PF02601 Exonuclease VII, large subunit M5598_12730 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal M5598_12730 PF01926 50S ribosome-binding GTPase M5598_12735 PF13360 PQQ-like domain M5598_12740 PF09976 Tetratricopeptide repeat-like domain M5598_12745 PF03129 Anticodon binding domain M5598_12745 PF13393 Histidyl-tRNA synthetase M5598_12750 PF04551 GcpE protein M5598_12755 PF13464 Domain of unknown function (DUF4115) M5598_12760 PF04055 Radical SAM superfamily M5598_12765 PF00334 Nucleoside diphosphate kinase M5598_12770 PF00883 Cytosol aminopeptidase family, catalytic domain M5598_12770 PF12404 Peptidase M5598_12775 PF04384 Iron-sulphur cluster assembly M5598_12780 PF00111 2Fe-2S iron-sulfur cluster binding domain M5598_12785 PF00012 Hsp70 protein M5598_12790 PF07743 HSCB C-terminal oligomerisation domain M5598_12790 PF00226 DnaJ domain M5598_12795 PF01521 Iron-sulphur cluster biosynthesis M5598_12800 PF01592 NifU-like N terminal domain M5598_12805 PF00266 Aminotransferase class-V M5598_12810 PF02082 Transcriptional regulator M5598_12815 PF00588 SpoU rRNA Methylase family M5598_12820 PF00459 Inositol monophosphatase family M5598_12825 PF02355 Protein export membrane protein M5598_12825 PF07549 SecD/SecF GG Motif M5598_12830 PF07549 SecD/SecF GG Motif M5598_12830 PF13721 SecD export protein N-terminal TM region M5598_12830 PF02355 Protein export membrane protein M5598_12835 PF02699 Preprotein translocase subunit M5598_12840 PF01702 Queuine tRNA-ribosyltransferase M5598_12845 PF02547 Queuosine biosynthesis protein M5598_12855 PF00571 CBS domain M5598_12860 PF00463 Isocitrate lyase family M5598_12865 PF01274 Malate synthase M5598_12870 PF03466 LysR substrate binding domain M5598_12870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_12875 PF00578 AhpC/TSA family M5598_12875 PF10417 C-terminal domain of 1-Cys peroxiredoxin M5598_12880 PF03932 CutC family M5598_12885 PF03976 Polyphosphate kinase 2 (PPK2) M5598_12890 PF01895 PhoU domain M5598_12895 PF00005 ABC transporter M5598_12900 PF00528 Binding-protein-dependent transport system inner membrane component M5598_12905 PF00528 Binding-protein-dependent transport system inner membrane component M5598_12910 PF13090 Polyphosphate kinase C-terminal domain 2 M5598_12910 PF02503 Polyphosphate kinase middle domain M5598_12910 PF13089 Polyphosphate kinase N-terminal domain M5598_12910 PF17941 Polyphosphate kinase C-terminal domain 1 M5598_12915 PF02541 Ppx/GppA phosphatase family M5598_12920 PF12849 PBP superfamily domain M5598_12925 PF00989 PAS fold M5598_12925 PF11808 Phosphate regulon sensor protein PhoR M5598_12925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_12925 PF00512 His Kinase A (phospho-acceptor) domain M5598_12930 PF00486 Transcriptional regulatory protein, C terminal M5598_12930 PF00072 Response regulator receiver domain M5598_12935 PF04381 Putative exonuclease, RdgC M5598_12940 PF01136 Peptidase family U32 M5598_12940 PF16325 Peptidase family U32 C-terminal domain M5598_12945 PF00037 4Fe-4S binding domain M5598_12955 PF03411 Penicillin-insensitive murein endopeptidase M5598_13000 PF17871 AAA lid domain M5598_13000 PF00004 ATPase family associated with various cellular activities (AAA) M5598_13000 PF07724 AAA domain (Cdc48 subfamily) M5598_13000 PF02861 Clp amino terminal domain, pathogenicity island component M5598_13000 PF10431 C-terminal, D2-small domain, of ClpB protein M5598_13005 PF02578 Multi-copper polyphenol oxidoreductase laccase M5598_13010 PF01479 S4 domain M5598_13010 PF00849 RNA pseudouridylate synthase M5598_13015 PF13525 Outer membrane lipoprotein M5598_13020 PF01464 Transglycosylase SLT domain M5598_13025 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein M5598_13030 PF00800 Prephenate dehydratase M5598_13030 PF01817 Chorismate mutase type II M5598_13035 PF01931 Protein of unknown function DUF84 M5598_13040 PF01371 Trp repressor protein M5598_13045 PF14718 Soluble lytic murein transglycosylase L domain M5598_13045 PF01464 Transglycosylase SLT domain M5598_13050 PF00005 ABC transporter M5598_13050 PF12848 ABC transporter M5598_13055 PF07238 PilZ domain M5598_13060 PF01551 Peptidase family M23 M5598_13060 PF04225 Opacity-associated protein A LysM-like domain M5598_13065 PF02153 Prephenate dehydrogenase M5598_13065 PF01817 Chorismate mutase type II M5598_13070 PF00793 DAHP synthetase I family M5598_13075 PF00933 Glycosyl hydrolase family 3 N terminal domain M5598_13080 PF03702 Anhydro-N-acetylmuramic acid kinase M5598_13085 PF13580 SIS domain M5598_13100 PF02554 Carbon starvation protein CstA M5598_13105 PF06580 Histidine kinase M5598_13105 PF07694 5TMR of 5TMR-LYT M5598_13110 PF00072 Response regulator receiver domain M5598_13110 PF04397 LytTr DNA-binding domain M5598_13115 PF02401 LytB protein M5598_13120 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M5598_13125 PF01252 Signal peptidase (SPase) II M5598_13130 PF08264 Anticodon-binding domain of tRNA M5598_13130 PF00133 tRNA synthetases class I (I, L, M and V) M5598_13130 PF06827 Zinc finger found in FPG and IleRS M5598_13135 PF06574 FAD synthetase M5598_13135 PF01687 Riboflavin kinase M5598_13140 PF03023 Lipid II flippase MurJ M5598_13145 PF01649 Ribosomal protein S20 M5598_13150 PF01022 Bacterial regulatory protein, arsR family M5598_13155 PF03466 LysR substrate binding domain M5598_13155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_13160 PF02690 Na+/Pi-cotransporter M5598_13170 PF00303 Thymidylate synthase M5598_13175 PF01790 Prolipoprotein diacylglyceryl transferase M5598_13180 PF01925 Sulfite exporter TauE/SafE M5598_13185 PF01590 GAF domain M5598_13185 PF00391 PEP-utilising enzyme, mobile domain M5598_13185 PF02896 PEP-utilising enzyme, TIM barrel domain M5598_13185 PF05524 PEP-utilising enzyme, N-terminal M5598_13190 PF00293 NUDIX domain M5598_13195 PF02976 DNA mismatch repair enzyme MutH M5598_13205 PF00248 Aldo/keto reductase family M5598_13215 PF02954 Bacterial regulatory protein, Fis family M5598_13215 PF00072 Response regulator receiver domain M5598_13215 PF00158 Sigma-54 interaction domain M5598_13220 PF01336 OB-fold nucleic acid binding domain M5598_13220 PF00152 tRNA synthetases class II (D, K and N) M5598_13230 PF02272 DHHA1 domain M5598_13230 PF01368 DHH family M5598_13230 PF17768 RecJ OB domain M5598_13235 PF13098 Thioredoxin-like domain M5598_13235 PF10411 Disulfide bond isomerase protein N-terminus M5598_13240 PF02899 Phage integrase, N-terminal SAM-like domain M5598_13240 PF00589 Phage integrase family M5598_13245 PF00258 Flavodoxin M5598_13250 PF05525 Branched-chain amino acid transport protein M5598_13255 PF05175 Methyltransferase small domain M5598_13260 PF00271 Helicase conserved C-terminal domain M5598_13260 PF00270 DEAD/DEAH box helicase M5598_13265 PF03883 Peroxide stress protein YaaA M5598_13300 PF01235 Sodium:alanine symporter family M5598_13315 PF03167 Uracil DNA glycosylase superfamily M5598_13320 PF01261 Xylose isomerase-like TIM barrel M5598_13325 PF01228 Glycine radical M5598_13330 PF00291 Pyridoxal-phosphate dependent enzyme M5598_13330 PF14821 Threonine synthase N terminus M5598_13335 PF08544 GHMP kinases C terminal M5598_13335 PF00288 GHMP kinases N terminal domain M5598_13340 PF03447 Homoserine dehydrogenase, NAD binding domain M5598_13340 PF13840 ACT domain M5598_13340 PF01842 ACT domain M5598_13340 PF00696 Amino acid kinase family M5598_13340 PF00742 Homoserine dehydrogenase M5598_13350 PF03737 Aldolase/RraA M5598_13360 PF00486 Transcriptional regulatory protein, C terminal M5598_13360 PF00072 Response regulator receiver domain M5598_13370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_13370 PF00512 His Kinase A (phospho-acceptor) domain M5598_13370 PF18415 Histidine kinase receptor ArcB trans-membrane domain M5598_13370 PF01627 Hpt domain M5598_13370 PF00989 PAS fold M5598_13370 PF00072 Response regulator receiver domain M5598_13375 PF00360 Phytochrome region M5598_13375 PF00563 EAL domain M5598_13375 PF01590 GAF domain M5598_13375 PF00990 Diguanylate cyclase, GGDEF domain M5598_13380 PF04055 Radical SAM superfamily M5598_13380 PF16199 Radical_SAM C-terminal domain M5598_13385 PF00310 Glutamine amidotransferases class-II M5598_13385 PF01645 Conserved region in glutamate synthase M5598_13385 PF04898 Glutamate synthase central domain M5598_13385 PF01493 GXGXG motif M5598_13390 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster M5598_13390 PF07992 Pyridine nucleotide-disulphide oxidoreductase M5598_13395 PF00310 Glutamine amidotransferases class-II M5598_13395 PF04898 Glutamate synthase central domain M5598_13395 PF01645 Conserved region in glutamate synthase M5598_13395 PF01493 GXGXG motif M5598_13400 PF07992 Pyridine nucleotide-disulphide oxidoreductase M5598_13400 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster M5598_13410 PF01048 Phosphorylase superfamily M5598_13415 PF03186 CobD/Cbib protein M5598_13415 PF17113 Regulatory signalling modulator protein AmpE M5598_13420 PF01497 Periplasmic binding protein M5598_13425 PF03458 UPF0126 domain M5598_13430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_13430 PF03466 LysR substrate binding domain M5598_13435 PF01925 Sulfite exporter TauE/SafE M5598_13450 PF02142 MGS-like domain M5598_13450 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M5598_13450 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain M5598_13455 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain M5598_13455 PF00117 Glutamine amidotransferase class-I M5598_13460 PF01113 Dihydrodipicolinate reductase, N-terminus M5598_13460 PF05173 Dihydrodipicolinate reductase, C-terminus M5598_13465 PF00293 NUDIX domain M5598_13470 PF07516 SecA Wing and Scaffold domain M5598_13470 PF01043 SecA preprotein cross-linking domain M5598_13470 PF07517 SecA DEAD-like domain M5598_13470 PF02810 SEC-C motif M5598_13480 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase M5598_13485 PF12327 FtsZ family, C-terminal domain M5598_13485 PF00091 Tubulin/FtsZ family, GTPase domain M5598_13490 PF02491 SHS2 domain inserted in FTSA M5598_13495 PF08478 POTRA domain, FtsQ-type M5598_13495 PF03799 Cell division protein FtsQ M5598_13500 PF01225 Mur ligase family, catalytic domain M5598_13500 PF02875 Mur ligase family, glutamate ligase domain M5598_13500 PF08245 Mur ligase middle domain M5598_13505 PF03033 Glycosyltransferase family 28 N-terminal domain M5598_13505 PF04101 Glycosyltransferase family 28 C-terminal domain M5598_13510 PF01098 Cell cycle protein M5598_13515 PF02875 Mur ligase family, glutamate ligase domain M5598_13515 PF08245 Mur ligase middle domain M5598_13520 PF00953 Glycosyl transferase family 4 M5598_13520 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 M5598_13525 PF01225 Mur ligase family, catalytic domain M5598_13525 PF02875 Mur ligase family, glutamate ligase domain M5598_13525 PF08245 Mur ligase middle domain M5598_13530 PF08245 Mur ligase middle domain M5598_13530 PF02875 Mur ligase family, glutamate ligase domain M5598_13530 PF01225 Mur ligase family, catalytic domain M5598_13535 PF03717 Penicillin-binding Protein dimerisation domain M5598_13535 PF00905 Penicillin binding protein transpeptidase domain M5598_13540 PF04999 Cell division protein FtsL M5598_13545 PF01795 MraW methylase family M5598_13555 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M5598_13560 PF04348 LppC putative lipoprotein M5598_13565 PF02021 Uncharacterised protein family UPF0102 M5598_13570 PF13580 SIS domain M5598_13575 PF04972 BON domain M5598_13580 PF04386 Stringent starvation protein B M5598_13585 PF00043 Glutathione S-transferase, C-terminal domain M5598_13585 PF02798 Glutathione S-transferase, N-terminal domain M5598_13590 PF02167 Cytochrome C1 family M5598_13595 PF00032 Cytochrome b(C-terminal)/b6/petD M5598_13595 PF00033 Cytochrome b/b6/petB M5598_13600 PF00355 Rieske [2Fe-2S] domain M5598_13600 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal M5598_13605 PF00380 Ribosomal protein S9/S16 M5598_13610 PF00572 Ribosomal protein L13 M5598_13615 PF03969 AFG1-like ATPase M5598_13620 PF06295 Protein of unknown function (DUF1043) M5598_13625 PF00595 PDZ domain M5598_13630 PF13180 PDZ domain M5598_13635 PF00521 DNA gyrase/topoisomerase IV, subunit A M5598_13635 PF03989 DNA gyrase C-terminal domain, beta-propeller M5598_13640 PF00986 DNA gyrase B subunit, carboxyl terminus M5598_13640 PF00204 DNA gyrase B M5598_13640 PF01751 Toprim domain M5598_13640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_13645 PF05728 Uncharacterised protein family (UPF0227) M5598_13650 PF00149 Calcineurin-like phosphoesterase M5598_13655 PF06853 Protein of unknown function (DUF1249) M5598_13660 PF00293 NUDIX domain M5598_13665 PF02321 Outer membrane efflux protein M5598_13670 PF01467 Cytidylyltransferase-like M5598_13670 PF00294 pfkB family carbohydrate kinase M5598_13675 PF08335 GlnD PII-uridylyltransferase M5598_13675 PF03710 Glutamate-ammonia ligase adenylyltransferase M5598_13680 PF00672 HAMP domain M5598_13680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M5598_13690 PF01928 CYTH domain M5598_13695 PF01865 Protein of unknown function DUF47 M5598_13700 PF01384 Phosphate transporter family M5598_13705 PF08239 Bacterial SH3 domain M5598_13715 PF01471 Putative peptidoglycan binding domain M5598_13715 PF13401 AAA domain M5598_13720 PF01966 HD domain M5598_13720 PF01743 Poly A polymerase head domain M5598_13720 PF12627 Probable RNA and SrmB- binding site of polymerase A M5598_13725 PF02673 Bacitracin resistance protein BacA M5598_13730 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) M5598_13735 PF02152 Dihydroneopterin aldolase M5598_13740 PF02660 Glycerol-3-phosphate acyltransferase M5598_13745 PF12697 Alpha/beta hydrolase family M5598_13750 PF00814 Glycoprotease family M5598_13755 PF01165 Ribosomal protein S21 M5598_13760 PF09424 Yqey-like protein M5598_13765 PF01807 CHC2 zinc finger M5598_13765 PF10410 DnaB-helicase binding domain of primase M5598_13765 PF08275 DNA primase catalytic core, N-terminal domain M5598_13765 PF08278 DNA primase DnaG DnaB-binding M5598_13770 PF04546 Sigma-70, non-essential region M5598_13770 PF03979 Sigma-70 factor, region 1.1 M5598_13770 PF00140 Sigma-70 factor, region 1.2 M5598_13770 PF04542 Sigma-70 region 2 M5598_13770 PF04539 Sigma-70 region 3 M5598_13770 PF04545 Sigma-70, region 4 M5598_13780 PF03180 NLPA lipoprotein M5598_13810 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M5598_13810 PF02378 Phosphotransferase system, EIIC M5598_13810 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M5598_13815 PF08125 Mannitol dehydrogenase C-terminal domain M5598_13815 PF01232 Mannitol dehydrogenase Rossmann domain M5598_13820 PF05068 Mannitol repressor M5598_13825 PF02954 Bacterial regulatory protein, Fis family M5598_13825 PF00989 PAS fold M5598_13825 PF00158 Sigma-54 interaction domain M5598_13830 PF02896 PEP-utilising enzyme, TIM barrel domain M5598_13830 PF05524 PEP-utilising enzyme, N-terminal M5598_13830 PF00391 PEP-utilising enzyme, mobile domain M5598_13835 PF02734 DAK2 domain M5598_13840 PF02733 Dak1 domain M5598_13845 PF00465 Iron-containing alcohol dehydrogenase M5598_13850 PF00512 His Kinase A (phospho-acceptor) domain M5598_13850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_13850 PF00672 HAMP domain M5598_13855 PF00072 Response regulator receiver domain M5598_13855 PF00486 Transcriptional regulatory protein, C terminal M5598_13865 PF01380 SIS domain M5598_13870 PF00455 DeoR C terminal sensor domain M5598_13870 PF08220 DeoR-like helix-turn-helix domain M5598_13875 PF00224 Pyruvate kinase, barrel domain M5598_13875 PF02887 Pyruvate kinase, alpha/beta domain M5598_13885 PF00990 Diguanylate cyclase, GGDEF domain M5598_13890 PF10369 Small subunit of acetolactate synthase M5598_13895 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M5598_13895 PF00205 Thiamine pyrophosphate enzyme, central domain M5598_13895 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M5598_13900 PF00501 AMP-binding enzyme M5598_13905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_13905 PF03466 LysR substrate binding domain M5598_13915 PF01569 PAP2 superfamily M5598_13925 PF00682 HMGL-like M5598_13925 PF08502 LeuA allosteric (dimerisation) domain M5598_13930 PF00180 Isocitrate/isopropylmalate dehydrogenase M5598_13935 PF00330 Aconitase family (aconitate hydratase) M5598_13940 PF00694 Aconitase C-terminal domain M5598_13950 PF05099 Tellurite resistance protein TerB M5598_13950 PF00226 DnaJ domain M5598_13955 PF03968 OstA-like protein M5598_13955 PF04453 LPS transport system D M5598_13960 PF09312 SurA N-terminal domain M5598_13965 PF04166 Pyridoxal phosphate biosynthetic protein PdxA M5598_13970 PF00398 Ribosomal RNA adenine dimethylase M5598_13975 PF04379 ApaG domain M5598_13980 PF00149 Calcineurin-like phosphoesterase M5598_13985 PF00186 Dihydrofolate reductase M5598_13990 PF12821 Threonine/Serine exporter, ThrE M5598_13995 PF06738 Putative threonine/serine exporter M5598_14000 PF01926 50S ribosome-binding GTPase M5598_14000 PF01018 GTP1/OBG M5598_14005 PF01016 Ribosomal L27 protein M5598_14010 PF00829 Ribosomal prokaryotic L21 protein M5598_14015 PF00348 Polyprenyl synthetase M5598_14025 PF00056 lactate/malate dehydrogenase, NAD binding domain M5598_14025 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain M5598_14030 PF01316 Arginine repressor, DNA binding domain M5598_14030 PF02863 Arginine repressor, C-terminal domain M5598_14035 PF16868 NMT1-like family M5598_14050 PF00005 ABC transporter M5598_14055 PF00528 Binding-protein-dependent transport system inner membrane component M5598_14065 PF02441 Flavoprotein M5598_14070 PF01225 Mur ligase family, catalytic domain M5598_14070 PF08245 Mur ligase middle domain M5598_14070 PF02875 Mur ligase family, glutamate ligase domain M5598_14075 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain M5598_14080 PF00719 Inorganic pyrophosphatase M5598_14090 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like M5598_14095 PF04357 TamB, inner membrane protein subunit of TAM complex M5598_14100 PF17243 POTRA domain TamA domain 1 M5598_14100 PF01103 Surface antigen M5598_14105 PF01625 Peptide methionine sulfoxide reductase M5598_14110 PF06526 Protein of unknown function (DUF1107) M5598_14115 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) M5598_14120 PF10795 Protein of unknown function (DUF2607) M5598_14130 PF00005 ABC transporter M5598_14155 PF02080 TrkA-C domain M5598_14155 PF03600 Citrate transporter M5598_14160 PF00009 Elongation factor Tu GTP binding domain M5598_14165 PF01507 Phosphoadenosine phosphosulfate reductase family M5598_14170 PF10414 Sirohaem synthase dimerisation region M5598_14170 PF14824 Sirohaem biosynthesis protein central M5598_14170 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M5598_14175 PF02872 5'-nucleotidase, C-terminal domain M5598_14175 PF00149 Calcineurin-like phosphoesterase M5598_14190 PF00270 DEAD/DEAH box helicase M5598_14190 PF00271 Helicase conserved C-terminal domain M5598_14190 PF03880 DbpA RNA binding domain M5598_14195 PF13673 Acetyltransferase (GNAT) domain M5598_14205 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M5598_14205 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M5598_14215 PF01196 Ribosomal protein L17 M5598_14220 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain M5598_14220 PF01000 RNA polymerase Rpb3/RpoA insert domain M5598_14220 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain M5598_14225 PF00163 Ribosomal protein S4/S9 N-terminal domain M5598_14225 PF01479 S4 domain M5598_14230 PF00411 Ribosomal protein S11 M5598_14235 PF00416 Ribosomal protein S13/S18 M5598_14240 PF00444 Ribosomal protein L36 M5598_14245 PF00344 SecY translocase M5598_14250 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A M5598_14255 PF00327 Ribosomal protein L30p/L7e M5598_14260 PF00333 Ribosomal protein S5, N-terminal domain M5598_14260 PF03719 Ribosomal protein S5, C-terminal domain M5598_14265 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast M5598_14270 PF00347 Ribosomal protein L6 M5598_14275 PF00410 Ribosomal protein S8 M5598_14280 PF00253 Ribosomal protein S14p/S29e M5598_14285 PF00673 ribosomal L5P family C-terminus M5598_14285 PF00281 Ribosomal protein L5 M5598_14290 PF00467 KOW motif M5598_14290 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 M5598_14295 PF00238 Ribosomal protein L14p/L23e M5598_14300 PF00366 Ribosomal protein S17 M5598_14305 PF00831 Ribosomal L29 protein M5598_14310 PF00252 Ribosomal protein L16p/L10e M5598_14315 PF07650 KH domain M5598_14315 PF00189 Ribosomal protein S3, C-terminal domain M5598_14320 PF00237 Ribosomal protein L22p/L17e M5598_14325 PF00203 Ribosomal protein S19 M5598_14330 PF00181 Ribosomal Proteins L2, RNA binding domain M5598_14330 PF03947 Ribosomal Proteins L2, C-terminal domain M5598_14335 PF00276 Ribosomal protein L23 M5598_14340 PF00573 Ribosomal protein L4/L1 family M5598_14345 PF00297 Ribosomal protein L3 M5598_14350 PF00338 Ribosomal protein S10p/S20e M5598_14355 PF01197 Ribosomal protein L31 M5598_14360 PF17764 3′ DNA-binding domain (3′BD) M5598_14360 PF00270 DEAD/DEAH box helicase M5598_14360 PF00271 Helicase conserved C-terminal domain M5598_14360 PF18074 Primosomal protein N C-terminal domain M5598_14360 PF18319 PriA DNA helicase Cys-rich region (CRR) domain M5598_14365 PF00356 Bacterial regulatory proteins, lacI family M5598_14375 PF00227 Proteasome subunit M5598_14380 PF00004 ATPase family associated with various cellular activities (AAA) M5598_14380 PF07724 AAA domain (Cdc48 subfamily) M5598_14385 PF01040 UbiA prenyltransferase family M5598_14390 PF03737 Aldolase/RraA M5598_14395 PF06005 Cell division protein ZapB M5598_14400 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded M5598_14405 PF00455 DeoR C terminal sensor domain M5598_14405 PF08220 DeoR-like helix-turn-helix domain M5598_14425 PF00121 Triosephosphate isomerase M5598_14430 PF00483 Nucleotidyl transferase M5598_14435 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M5598_14435 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M5598_14435 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M5598_14450 PF00535 Glycosyl transferase family 2 M5598_14460 PF02080 TrkA-C domain M5598_14460 PF03600 Citrate transporter M5598_14490 PF00535 Glycosyl transferase family 2 M5598_14500 PF00483 Nucleotidyl transferase M5598_14515 PF16363 GDP-mannose 4,6 dehydratase M5598_14520 PF04321 RmlD substrate binding domain M5598_14525 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase M5598_14530 PF00483 Nucleotidyl transferase M5598_14540 PF00005 ABC transporter M5598_14545 PF01061 ABC-2 type transporter M5598_14550 PF10531 SLBB domain M5598_14550 PF02563 Polysaccharide biosynthesis/export protein M5598_14555 PF00953 Glycosyl transferase family 4 M5598_14570 PF00263 Bacterial type II and III secretion system protein M5598_14570 PF03958 Bacterial type II/III secretion system short domain M5598_14590 PF03934 Type II secretion system (T2SS), protein K M5598_14605 PF01507 Phosphoadenosine phosphosulfate reductase family M5598_14620 PF00009 Elongation factor Tu GTP binding domain M5598_14625 PF00953 Glycosyl transferase family 4 M5598_14640 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF M5598_14650 PF06082 Exopolysaccharide biosynthesis protein YbjH M5598_14655 PF01370 NAD dependent epimerase/dehydratase family M5598_14660 PF03279 Bacterial lipid A biosynthesis acyltransferase M5598_14665 PF01075 Glycosyltransferase family 9 (heptosyltransferase) M5598_14670 PF00534 Glycosyl transferases group 1 M5598_14670 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) M5598_14675 PF07922 Glycosyltransferase family 52 M5598_14680 PF02348 Cytidylyltransferase M5598_14685 PF00483 Nucleotidyl transferase M5598_14695 PF03102 NeuB family M5598_14695 PF08666 SAF domain M5598_14700 PF02350 UDP-N-acetylglucosamine 2-epimerase M5598_14705 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family M5598_14710 PF02719 Polysaccharide biosynthesis protein M5598_14720 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family M5598_14735 PF16363 GDP-mannose 4,6 dehydratase M5598_14745 PF01219 Prokaryotic diacylglycerol kinase M5598_14750 PF01075 Glycosyltransferase family 9 (heptosyltransferase) M5598_14755 PF00535 Glycosyl transferase family 2 M5598_14760 PF00535 Glycosyl transferase family 2 M5598_14765 PF01467 Cytidylyltransferase-like M5598_14770 PF05686 Glycosyl transferase family 90 M5598_14780 PF06827 Zinc finger found in FPG and IleRS M5598_14780 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain M5598_14780 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain M5598_14790 PF00471 Ribosomal protein L33 M5598_14795 PF00830 Ribosomal L28 family M5598_14800 PF04002 RadC-like JAB domain M5598_14805 PF17200 Single Cache domain 2 M5598_14805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M5598_14805 PF00672 HAMP domain M5598_14810 PF02441 Flavoprotein M5598_14810 PF04127 DNA / pantothenate metabolism flavoprotein M5598_14815 PF00440 Bacterial regulatory proteins, tetR family M5598_14820 PF03279 Bacterial lipid A biosynthesis acyltransferase M5598_14825 PF00156 Phosphoribosyl transferase domain M5598_14830 PF01138 3' exoribonuclease family, domain 1 M5598_14830 PF03725 3' exoribonuclease family, domain 2 M5598_14835 PF03755 YicC-like family, N-terminal region M5598_14835 PF08340 Domain of unknown function (DUF1732) M5598_14845 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M5598_14845 PF00005 ABC transporter M5598_14850 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M5598_14850 PF00005 ABC transporter M5598_14855 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M5598_14860 PF12911 N-terminal TM domain of oligopeptide transport permease C M5598_14860 PF00528 Binding-protein-dependent transport system inner membrane component M5598_14865 PF00528 Binding-protein-dependent transport system inner membrane component M5598_14870 PF07715 TonB-dependent Receptor Plug Domain M5598_14870 PF00593 TonB dependent receptor M5598_14885 PF01618 MotA/TolQ/ExbB proton channel family M5598_14890 PF02472 Biopolymer transport protein ExbD/TolR M5598_14905 PF00625 Guanylate kinase M5598_14910 PF01192 RNA polymerase Rpb6 M5598_14915 PF04607 Region found in RelA / SpoT proteins M5598_14915 PF02824 TGS domain M5598_14915 PF13291 ACT domain M5598_14920 PF12105 SpoU, rRNA methylase, C-terminal M5598_14920 PF00588 SpoU rRNA Methylase family M5598_14925 PF00270 DEAD/DEAH box helicase M5598_14925 PF17191 RecG wedge domain M5598_14925 PF00271 Helicase conserved C-terminal domain M5598_14930 PF00860 Permease family M5598_14935 PF00672 HAMP domain M5598_14935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_14935 PF00512 His Kinase A (phospho-acceptor) domain M5598_14940 PF00486 Transcriptional regulatory protein, C terminal M5598_14940 PF00072 Response regulator receiver domain M5598_14950 PF03449 Transcription elongation factor, N-terminal M5598_14950 PF01272 Transcription elongation factor, GreA/GreB, C-term M5598_14960 PF16921 Tex protein YqgF-like domain M5598_14960 PF00575 S1 RNA binding domain M5598_14960 PF17674 HHH domain M5598_14960 PF09371 Tex-like protein N-terminal domain M5598_14970 PF00561 alpha/beta hydrolase fold M5598_14975 PF00156 Phosphoribosyl transferase domain M5598_14980 PF01521 Iron-sulphur cluster biosynthesis M5598_14980 PF01106 NifU-like domain M5598_14985 PF00293 NUDIX domain M5598_14990 PF00459 Inositol monophosphatase family M5598_14995 PF01203 Type II secretion system (T2SS), protein N M5598_15000 PF04612 Type II secretion system (T2SS), protein M M5598_15005 PF12693 GspL periplasmic domain M5598_15005 PF05134 Type II secretion system (T2SS), protein L M5598_15010 PF03934 Type II secretion system (T2SS), protein K M5598_15015 PF07963 Prokaryotic N-terminal methylation motif M5598_15015 PF11612 Type II secretion system (T2SS), protein J M5598_15020 PF02501 Type II secretion system (T2SS), protein I M5598_15020 PF07963 Prokaryotic N-terminal methylation motif M5598_15025 PF12019 Type II transport protein GspH M5598_15030 PF07963 Prokaryotic N-terminal methylation motif M5598_15030 PF08334 Type II secretion system (T2SS), protein G M5598_15035 PF00482 Type II secretion system (T2SS), protein F M5598_15040 PF00437 Type II/IV secretion system protein M5598_15045 PF00263 Bacterial type II and III secretion system protein M5598_15045 PF03958 Bacterial type II/III secretion system short domain M5598_15050 PF11356 Type II secretion system protein C M5598_15055 PF01479 S4 domain M5598_15060 PF01430 Hsp33 protein M5598_15065 PF01293 Phosphoenolpyruvate carboxykinase M5598_15075 PF09500 Putative thioesterase (yiiD_Cterm) M5598_15075 PF00583 Acetyltransferase (GNAT) family M5598_15080 PF02580 D-Tyr-tRNA(Tyr) deacylase M5598_15085 PF03631 Virulence factor BrkB M5598_15100 PF00679 Elongation factor G C-terminus M5598_15100 PF00009 Elongation factor Tu GTP binding domain M5598_15100 PF03144 Elongation factor Tu domain 2 M5598_15105 PF00120 Glutamine synthetase, catalytic domain M5598_15105 PF03951 Glutamine synthetase, beta-Grasp domain M5598_15115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_15115 PF00512 His Kinase A (phospho-acceptor) domain M5598_15115 PF00989 PAS fold M5598_15120 PF02954 Bacterial regulatory protein, Fis family M5598_15120 PF00072 Response regulator receiver domain M5598_15120 PF00158 Sigma-54 interaction domain M5598_15125 PF03707 Bacterial signalling protein N terminal repeat M5598_15125 PF00990 Diguanylate cyclase, GGDEF domain M5598_15125 PF00563 EAL domain M5598_15130 PF00962 Adenosine/AMP deaminase M5598_15135 PF04055 Radical SAM superfamily M5598_15135 PF06969 HemN C-terminal domain M5598_15140 PF10675 Protein of unknown function (DUF2489) M5598_15145 PF04220 Der GTPase activator (YihI) M5598_15155 PF00034 Cytochrome c M5598_15160 PF01926 50S ribosome-binding GTPase M5598_15165 PF01367 5'-3' exonuclease, C-terminal SAM fold M5598_15165 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M5598_15165 PF00476 DNA polymerase family A M5598_15165 PF01612 3'-5' exonuclease M5598_15175 PF00490 Delta-aminolevulinic acid dehydratase M5598_15180 PF01026 TatD related DNase M5598_15185 PF00902 Sec-independent protein translocase protein (TatC) M5598_15190 PF02416 mttA/Hcf106 family M5598_15195 PF02416 mttA/Hcf106 family M5598_15200 PF03109 ABC1 family M5598_15205 PF02036 SCP-2 sterol transfer family M5598_15210 PF01209 ubiE/COQ5 methyltransferase family M5598_15215 PF02646 RmuC family M5598_15225 PF00563 EAL domain M5598_15225 PF00990 Diguanylate cyclase, GGDEF domain M5598_15225 PF03707 Bacterial signalling protein N terminal repeat M5598_15230 PF01594 AI-2E family transporter M5598_15280 PF04972 BON domain M5598_15285 PF01590 GAF domain M5598_15285 PF00158 Sigma-54 interaction domain M5598_15285 PF02954 Bacterial regulatory protein, Fis family M5598_15295 PF10625 Universal stress protein B (UspB) M5598_15300 PF00210 Ferritin-like domain M5598_15305 PF00582 Universal stress protein family M5598_15310 PF00892 EamA-like transporter family M5598_15320 PF04445 Putative SAM-dependent methyltransferase M5598_15325 PF00990 Diguanylate cyclase, GGDEF domain M5598_15325 PF00563 EAL domain M5598_15325 PF08448 PAS fold M5598_15330 PF01037 Lrp/AsnC ligand binding domain M5598_15335 PF01432 Peptidase family M3 M5598_15340 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ M5598_15345 PF07992 Pyridine nucleotide-disulphide oxidoreductase M5598_15345 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M5598_15350 PF03466 LysR substrate binding domain M5598_15350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_15355 PF01048 Phosphorylase superfamily M5598_15360 PF01081 KDPG and KHG aldolase M5598_15365 PF02447 GntP family permease M5598_15370 PF01202 Shikimate kinase M5598_15375 PF00920 Dehydratase family M5598_15380 PF00893 Small Multidrug Resistance protein M5598_15385 PF00893 Small Multidrug Resistance protein M5598_15390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_15390 PF03466 LysR substrate binding domain M5598_15395 PF00356 Bacterial regulatory proteins, lacI family M5598_15395 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M5598_15400 PF00069 Protein kinase domain M5598_15430 PF00528 Binding-protein-dependent transport system inner membrane component M5598_15430 PF12911 N-terminal TM domain of oligopeptide transport permease C M5598_15435 PF00528 Binding-protein-dependent transport system inner membrane component M5598_15440 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M5598_15445 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M5598_15445 PF00005 ABC transporter M5598_15450 PF13419 Haloacid dehalogenase-like hydrolase M5598_15480 PF13442 Cytochrome C oxidase, cbb3-type, subunit III M5598_15485 PF00580 UvrD/REP helicase N-terminal domain M5598_15485 PF13361 UvrD-like helicase C-terminal domain M5598_15490 PF16295 Tetracyclin repressor-like, C-terminal domain M5598_15490 PF00440 Bacterial regulatory proteins, tetR family M5598_15495 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M5598_15500 PF00873 AcrB/AcrD/AcrF family M5598_15505 PF04380 Membrane fusogenic activity M5598_15510 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain M5598_15510 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain M5598_15515 PF03466 LysR substrate binding domain M5598_15515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_15550 PF00132 Bacterial transferase hexapeptide (six repeats) M5598_15555 PF07369 Protein of unknown function (DUF1488) M5598_15560 PF08501 Shikimate dehydrogenase substrate binding domain M5598_15560 PF01488 Shikimate / quinate 5-dehydrogenase M5598_15560 PF18317 Shikimate 5'-dehydrogenase C-terminal domain M5598_15565 PF01218 Coproporphyrinogen III oxidase M5598_15570 PF01300 Telomere recombination M5598_15575 PF00731 AIR carboxylase M5598_15580 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain M5598_15580 PF02222 ATP-grasp domain M5598_15585 PF01396 Topoisomerase DNA binding C4 zinc finger M5598_15590 PF04361 Protein of unknown function (DUF494) M5598_15595 PF17782 DprA winged helix domain M5598_15595 PF02481 DNA recombination-mediator protein A M5598_15605 PF01327 Polypeptide deformylase M5598_15610 PF00551 Formyl transferase M5598_15610 PF02911 Formyl transferase, C-terminal domain M5598_15615 PF01189 16S rRNA methyltransferase RsmB/F M5598_15615 PF01029 NusB family M5598_15620 PF02080 TrkA-C domain M5598_15620 PF02254 TrkA-N domain M5598_15625 PF02386 Cation transport protein M5598_15635 PF03006 Haemolysin-III related M5598_15640 PF07070 SpoOM protein M5598_15650 PF06288 Protein of unknown function (DUF1040) M5598_15655 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase M5598_15655 PF12801 4Fe-4S binding domain M5598_15655 PF13746 4Fe-4S dicluster domain M5598_15660 PF01636 Phosphotransferase enzyme family M5598_15665 PF01323 DSBA-like thioredoxin domain M5598_15670 PF01553 Acyltransferase M5598_15680 PF01078 Magnesium chelatase, subunit ChlI M5598_15680 PF13335 Magnesium chelatase, subunit ChlI C-terminal M5598_15685 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M5598_15685 PF00205 Thiamine pyrophosphate enzyme, central domain M5598_15685 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M5598_15695 PF01063 Amino-transferase class IV M5598_15700 PF00920 Dehydratase family M5598_15705 PF00585 C-terminal regulatory domain of Threonine dehydratase M5598_15705 PF00291 Pyridoxal-phosphate dependent enzyme M5598_15710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_15710 PF03466 LysR substrate binding domain M5598_15715 PF07690 Major Facilitator Superfamily M5598_15720 PF00497 Bacterial extracellular solute-binding proteins, family 3 M5598_15725 PF00528 Binding-protein-dependent transport system inner membrane component M5598_15730 PF12804 MobA-like NTP transferase domain M5598_15730 PF00132 Bacterial transferase hexapeptide (six repeats) M5598_15735 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain M5598_15735 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain M5598_15740 PF02874 ATP synthase alpha/beta family, beta-barrel domain M5598_15740 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M5598_15745 PF00231 ATP synthase M5598_15750 PF02874 ATP synthase alpha/beta family, beta-barrel domain M5598_15750 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M5598_15750 PF00306 ATP synthase alpha/beta chain, C terminal domain M5598_15755 PF00213 ATP synthase delta (OSCP) subunit M5598_15760 PF00430 ATP synthase B/B' CF(0) M5598_15765 PF00137 ATP synthase subunit C M5598_15770 PF00119 ATP synthase A chain M5598_15775 PF03899 ATP synthase I chain M5598_15780 PF17762 HTH domain found in ParB protein M5598_15780 PF02195 ParB-like nuclease domain M5598_15785 PF13614 AAA domain M5598_15790 PF02527 rRNA small subunit methyltransferase G M5598_15795 PF13932 GidA associated domain M5598_15795 PF01134 Glucose inhibited division protein A M5598_15800 PF00258 Flavodoxin M5598_15805 PF01926 50S ribosome-binding GTPase M5598_15805 PF12631 MnmE helical domain M5598_15805 PF10396 GTP-binding protein TrmE N-terminus M5598_15810 PF02096 60Kd inner membrane protein M5598_15810 PF14849 YidC periplasmic domain M5598_15815 PF01809 Putative membrane protein insertion efficiency factor M5598_15820 PF00825 Ribonuclease P M5598_15825 PF00468 Ribosomal protein L34 M5598_15830 PF00005 ABC transporter M5598_15835 PF00528 Binding-protein-dependent transport system inner membrane component M5598_15840 PF00497 Bacterial extracellular solute-binding proteins, family 3 M5598_15845 PF02887 Pyruvate kinase, alpha/beta domain M5598_15845 PF00224 Pyruvate kinase, barrel domain M5598_15850 PF00005 ABC transporter M5598_15855 PF00528 Binding-protein-dependent transport system inner membrane component M5598_15860 PF00497 Bacterial extracellular solute-binding proteins, family 3 M5598_15865 PF00528 Binding-protein-dependent transport system inner membrane component M5598_15870 PF00563 EAL domain M5598_15870 PF01590 GAF domain M5598_15870 PF00990 Diguanylate cyclase, GGDEF domain M5598_15870 PF00989 PAS fold M5598_15885 PF00356 Bacterial regulatory proteins, lacI family M5598_15885 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M5598_15890 PF00381 PTS HPr component phosphorylation site M5598_15890 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M5598_15895 PF00294 pfkB family carbohydrate kinase M5598_15900 PF02378 Phosphotransferase system, EIIC M5598_15900 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M5598_15910 PF00873 AcrB/AcrD/AcrF family M5598_15930 PF01571 Aminomethyltransferase folate-binding domain M5598_15930 PF08669 Glycine cleavage T-protein C-terminal barrel domain M5598_15940 PF00464 Serine hydroxymethyltransferase M5598_15945 PF01597 Glycine cleavage H-protein M5598_15950 PF02347 Glycine cleavage system P-protein M5598_15985 PF01039 Carboxyl transferase domain M5598_15985 PF17848 Acetyl-coA carboxylase zinc finger domain M5598_15990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_15990 PF03466 LysR substrate binding domain M5598_15995 PF14579 Helix-hairpin-helix motif M5598_15995 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M5598_15995 PF07733 Bacterial DNA polymerase III alpha NTPase domain M5598_15995 PF00929 Exonuclease M5598_15995 PF02811 PHP domain M5598_15995 PF11490 DNA polymerase III polC-type N-terminus II M5598_16000 PF00664 ABC transporter transmembrane region M5598_16000 PF00005 ABC transporter M5598_16020 PF02253 Phospholipase A1 M5598_16030 PF00376 MerR family regulatory protein M5598_16030 PF09278 MerR, DNA binding M5598_16035 PF01327 Polypeptide deformylase M5598_16065 PF00571 CBS domain M5598_16065 PF01769 Divalent cation transporter M5598_16065 PF03448 MgtE intracellular N domain M5598_16085 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M5598_16090 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M5598_16100 PF01757 Acyltransferase family M5598_16110 PF09722 Protein of unknown function (DUF2384) M5598_16115 PF00141 Peroxidase M5598_16120 PF13187 4Fe-4S dicluster domain M5598_16120 PF01645 Conserved region in glutamate synthase M5598_16130 PF12431 Transcriptional regulator M5598_16130 PF00072 Response regulator receiver domain M5598_16135 PF00989 PAS fold M5598_16135 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain M5598_16135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_16135 PF17203 Single cache domain 3 M5598_16140 PF00939 Sodium:sulfate symporter transmembrane region M5598_16145 PF00171 Aldehyde dehydrogenase family M5598_16165 PF00892 EamA-like transporter family M5598_16170 PF00893 Small Multidrug Resistance protein M5598_16175 PF07504 Fungalysin/Thermolysin Propeptide Motif M5598_16175 PF03413 Peptidase propeptide and YPEB domain M5598_16175 PF01447 Thermolysin metallopeptidase, catalytic domain M5598_16175 PF02868 Thermolysin metallopeptidase, alpha-helical domain M5598_16175 PF04151 Bacterial pre-peptidase C-terminal domain M5598_16185 PF00814 Glycoprotease family M5598_16185 PF00583 Acetyltransferase (GNAT) family M5598_16195 PF03606 C4-dicarboxylate anaerobic carrier M5598_16200 PF01610 Transposase M5598_16200 PF13542 Helix-turn-helix domain of transposase family ISL3 M5598_16200 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 M5598_16205 PF04011 LemA family M5598_16210 PF01435 Peptidase family M48 M5598_16225 PF18081 Fanconi anemia-associated nuclease SAP domain M5598_16225 PF08774 VRR-NUC domain M5598_16235 PF13186 Iron-sulfur cluster-binding domain M5598_16235 PF04055 Radical SAM superfamily M5598_16250 PF04076 Bacterial OB fold (BOF) protein M5598_16255 PF00781 Diacylglycerol kinase catalytic domain M5598_16260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_16260 PF03466 LysR substrate binding domain M5598_16265 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M5598_16280 PF00092 von Willebrand factor type A domain M5598_16295 PF17863 AAA lid domain M5598_16295 PF07726 ATPase family associated with various cellular activities (AAA) M5598_16300 PF04055 Radical SAM superfamily M5598_16300 PF13186 Iron-sulfur cluster-binding domain M5598_16305 PF16385 Domain of unknown function M5598_16305 PF00884 Sulfatase M5598_16310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_16310 PF03466 LysR substrate binding domain M5598_16320 PF00884 Sulfatase M5598_16325 PF16385 Domain of unknown function M5598_16325 PF00884 Sulfatase M5598_16330 PF00486 Transcriptional regulatory protein, C terminal M5598_16330 PF00072 Response regulator receiver domain M5598_16345 PF01627 Hpt domain M5598_16345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_16345 PF00672 HAMP domain M5598_16345 PF00512 His Kinase A (phospho-acceptor) domain M5598_16345 PF00072 Response regulator receiver domain M5598_16350 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M5598_16355 PF02142 MGS-like domain M5598_16360 PF12462 DNA helicase IV / RNA helicase N terminal M5598_16360 PF00580 UvrD/REP helicase N-terminal domain M5598_16360 PF13361 UvrD-like helicase C-terminal domain M5598_16365 PF12805 FUSC-like inner membrane protein yccS M5598_16395 PF07715 TonB-dependent Receptor Plug Domain M5598_16395 PF00593 TonB dependent receptor M5598_16405 PF13411 MerR HTH family regulatory protein M5598_16410 PF00005 ABC transporter M5598_16415 PF01032 FecCD transport family M5598_16420 PF01032 FecCD transport family M5598_16425 PF01497 Periplasmic binding protein M5598_16435 PF01048 Phosphorylase superfamily M5598_16440 PF04973 Nicotinamide mononucleotide transporter M5598_16450 PF00356 Bacterial regulatory proteins, lacI family M5598_16455 PF00294 pfkB family carbohydrate kinase M5598_16460 PF13407 Periplasmic binding protein domain M5598_16465 PF02653 Branched-chain amino acid transport system / permease component M5598_16470 PF00005 ABC transporter M5598_16475 PF05025 RbsD / FucU transport protein family M5598_16480 PF00563 EAL domain M5598_16480 PF00990 Diguanylate cyclase, GGDEF domain M5598_16485 PF01048 Phosphorylase superfamily M5598_16525 PF04116 Fatty acid hydroxylase superfamily M5598_16540 PF00512 His Kinase A (phospho-acceptor) domain M5598_16540 PF09308 LuxQ, periplasmic M5598_16540 PF00072 Response regulator receiver domain M5598_16540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_16545 PF03150 Di-haem cytochrome c peroxidase M5598_16545 PF00034 Cytochrome c M5598_16550 PF00563 EAL domain M5598_16550 PF03707 Bacterial signalling protein N terminal repeat M5598_16550 PF13188 PAS domain M5598_16550 PF00990 Diguanylate cyclase, GGDEF domain M5598_16560 PF16200 C-terminal region of band_7 M5598_16560 PF01145 SPFH domain / Band 7 family M5598_16570 PF00881 Nitroreductase family M5598_16575 PF00005 ABC transporter M5598_16575 PF00571 CBS domain M5598_16580 PF00528 Binding-protein-dependent transport system inner membrane component M5598_16585 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M5598_16590 PF05199 GMC oxidoreductase M5598_16590 PF00732 GMC oxidoreductase M5598_16595 PF00171 Aldehyde dehydrogenase family M5598_16600 PF00440 Bacterial regulatory proteins, tetR family M5598_16600 PF13977 BetI-type transcriptional repressor, C-terminal M5598_16605 PF17151 Periplasmic sensor domain M5598_16605 PF00990 Diguanylate cyclase, GGDEF domain M5598_16615 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M5598_16615 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M5598_16625 PF00378 Enoyl-CoA hydratase/isomerase M5598_16630 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M5598_16630 PF02770 Acyl-CoA dehydrogenase, middle domain M5598_16630 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M5598_16635 PF00171 Aldehyde dehydrogenase family M5598_16640 PF00108 Thiolase, N-terminal domain M5598_16640 PF02803 Thiolase, C-terminal domain M5598_16645 PF00376 MerR family regulatory protein M5598_16645 PF09278 MerR, DNA binding M5598_16650 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M5598_16650 PF02770 Acyl-CoA dehydrogenase, middle domain M5598_16650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M5598_16655 PF01039 Carboxyl transferase domain M5598_16660 PF00378 Enoyl-CoA hydratase/isomerase M5598_16665 PF02785 Biotin carboxylase C-terminal domain M5598_16665 PF00289 Biotin carboxylase, N-terminal domain M5598_16665 PF00364 Biotin-requiring enzyme M5598_16665 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M5598_16670 PF00682 HMGL-like M5598_16675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_16675 PF00512 His Kinase A (phospho-acceptor) domain M5598_16675 PF00672 HAMP domain M5598_16675 PF00072 Response regulator receiver domain M5598_16675 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M5598_16675 PF01627 Hpt domain M5598_16690 PF14602 Hexapeptide repeat of succinyl-transferase M5598_16690 PF12464 Maltose acetyltransferase M5598_16695 PF00392 Bacterial regulatory proteins, gntR family M5598_16695 PF00155 Aminotransferase class I and II M5598_16700 PF01654 Cytochrome bd terminal oxidase subunit I M5598_16705 PF02322 Cytochrome bd terminal oxidase subunit II M5598_16720 PF02627 Carboxymuconolactone decarboxylase family M5598_16725 PF13411 MerR HTH family regulatory protein M5598_16735 PF00034 Cytochrome c M5598_16750 PF14535 AMP-binding enzyme C-terminal domain M5598_16750 PF00501 AMP-binding enzyme M5598_16755 PF00005 ABC transporter M5598_16780 PF00005 ABC transporter M5598_16780 PF12399 Branched-chain amino acid ATP-binding cassette transporter M5598_16790 PF01012 Electron transfer flavoprotein domain M5598_16795 PF00766 Electron transfer flavoprotein FAD-binding domain M5598_16795 PF01012 Electron transfer flavoprotein domain M5598_16800 PF00501 AMP-binding enzyme M5598_16800 PF13193 AMP-binding enzyme C-terminal domain M5598_17000 PF06892 Phage regulatory protein CII (CP76) M5598_17030 PF00589 Phage integrase family M5598_17030 PF02899 Phage integrase, N-terminal SAM-like domain M5598_17035 PF00478 IMP dehydrogenase / GMP reductase domain M5598_17040 PF01256 Carbohydrate kinase M5598_17040 PF03853 YjeF-related protein N-terminus M5598_17050 PF00072 Response regulator receiver domain M5598_17055 PF00248 Aldo/keto reductase family M5598_17070 PF00654 Voltage gated chloride channel M5598_17080 PF01566 Natural resistance-associated macrophage protein M5598_17085 PF01227 GTP cyclohydrolase I M5598_17090 PF00994 Probable molybdopterin binding domain M5598_17090 PF03454 MoeA C-terminal region (domain IV) M5598_17090 PF03453 MoeA N-terminal region (domain I and II) M5598_17095 PF00899 ThiF family M5598_17115 PF00581 Rhodanese-like domain M5598_17120 PF03707 Bacterial signalling protein N terminal repeat M5598_17120 PF00990 Diguanylate cyclase, GGDEF domain M5598_17120 PF00563 EAL domain M5598_17125 PF00704 Glycosyl hydrolases family 18 M5598_17125 PF08329 Chitinase A, N-terminal domain M5598_17135 PF00923 Transaldolase/Fructose-6-phosphate aldolase M5598_17140 PF02779 Transketolase, pyrimidine binding domain M5598_17140 PF02780 Transketolase, C-terminal domain M5598_17140 PF00456 Transketolase, thiamine diphosphate binding domain M5598_17145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M5598_17145 PF08447 PAS fold M5598_17150 PF07690 Major Facilitator Superfamily M5598_17155 PF00793 DAHP synthetase I family M5598_17160 PF00691 OmpA family M5598_17160 PF01389 OmpA-like transmembrane domain M5598_17165 PF13419 Haloacid dehalogenase-like hydrolase M5598_17170 PF00472 RF-1 domain M5598_17175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M5598_17175 PF12729 Four helix bundle sensory module for signal transduction M5598_17175 PF00672 HAMP domain M5598_17180 PF00873 AcrB/AcrD/AcrF family M5598_17185 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M5598_17190 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M5598_17195 PF07687 Peptidase dimerisation domain M5598_17195 PF01546 Peptidase family M20/M25/M40 M5598_17210 PF00196 Bacterial regulatory proteins, luxR family M5598_17210 PF00072 Response regulator receiver domain M5598_17215 PF00672 HAMP domain M5598_17215 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term M5598_17215 PF07730 Histidine kinase M5598_17215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_17220 PF00037 4Fe-4S binding domain M5598_17220 PF13187 4Fe-4S dicluster domain M5598_17220 PF12800 4Fe-4S binding domain M5598_17230 PF00384 Molybdopterin oxidoreductase M5598_17230 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M5598_17230 PF01568 Molydopterin dinucleotide binding domain M5598_17235 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) M5598_17240 PF03264 NapC/NirT cytochrome c family, N-terminal region M5598_17250 PF00561 alpha/beta hydrolase fold M5598_17250 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus M5598_17260 PF02803 Thiolase, C-terminal domain M5598_17260 PF00108 Thiolase, N-terminal domain M5598_17265 PF00106 short chain dehydrogenase M5598_17270 PF01810 LysE type translocator M5598_17280 PF02355 Protein export membrane protein M5598_17280 PF07549 SecD/SecF GG Motif M5598_17285 PF07549 SecD/SecF GG Motif M5598_17285 PF13721 SecD export protein N-terminal TM region M5598_17285 PF02355 Protein export membrane protein M5598_17310 PF01037 Lrp/AsnC ligand binding domain M5598_17330 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M5598_17330 PF00529 HlyD membrane-fusion protein of T1SS M5598_17340 PF09308 LuxQ, periplasmic M5598_17340 PF00072 Response regulator receiver domain M5598_17340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_17340 PF00512 His Kinase A (phospho-acceptor) domain M5598_17345 PF13407 Periplasmic binding protein domain M5598_17350 PF01541 GIY-YIG catalytic domain M5598_17355 PF04337 Protein of unknown function, DUF480 M5598_17365 PF04363 Protein of unknown function (DUF496) M5598_17370 PF01554 MatE M5598_17375 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M5598_17380 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M5598_17380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_17380 PF00672 HAMP domain M5598_17380 PF00072 Response regulator receiver domain M5598_17380 PF01627 Hpt domain M5598_17380 PF00512 His Kinase A (phospho-acceptor) domain M5598_17385 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M5598_17385 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M5598_17400 PF03466 LysR substrate binding domain M5598_17400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_17405 PF01037 Lrp/AsnC ligand binding domain M5598_17405 PF13404 AsnC-type helix-turn-helix domain M5598_17410 PF13520 Amino acid permease M5598_17415 PF00155 Aminotransferase class I and II M5598_17415 PF00392 Bacterial regulatory proteins, gntR family M5598_17425 PF03109 ABC1 family M5598_17430 PF00571 CBS domain M5598_17430 PF03448 MgtE intracellular N domain M5598_17430 PF01769 Divalent cation transporter M5598_17435 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin M5598_17440 PF07969 Amidohydrolase family M5598_17450 PF01966 HD domain M5598_17460 PF07690 Major Facilitator Superfamily M5598_17470 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase M5598_17475 PF00255 Glutathione peroxidase M5598_17490 PF01323 DSBA-like thioredoxin domain M5598_17505 PF00106 short chain dehydrogenase M5598_17510 PF00072 Response regulator receiver domain M5598_17510 PF00486 Transcriptional regulatory protein, C terminal M5598_17515 PF00672 HAMP domain M5598_17515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_17515 PF00512 His Kinase A (phospho-acceptor) domain M5598_17525 PF01219 Prokaryotic diacylglycerol kinase M5598_17530 PF08019 Phosphoethanolamine transferase EptA/EptB M5598_17530 PF00884 Sulfatase M5598_17535 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M5598_17560 PF01047 MarR family M5598_17570 PF01734 Patatin-like phospholipase M5598_17575 PF02678 Pirin M5598_17575 PF05726 Pirin C-terminal cupin domain M5598_17580 PF00313 'Cold-shock' DNA-binding domain M5598_17595 PF00962 Adenosine/AMP deaminase M5598_17600 PF00462 Glutaredoxin M5598_17600 PF08534 Redoxin M5598_17610 PF07943 Penicillin-binding protein 5, C-terminal domain M5598_17610 PF00768 D-alanyl-D-alanine carboxypeptidase M5598_17615 PF02798 Glutathione S-transferase, N-terminal domain M5598_17620 PF08244 Glycosyl hydrolases family 32 C terminal M5598_17620 PF00251 Glycosyl hydrolases family 32 N-terminal domain M5598_17625 PF00294 pfkB family carbohydrate kinase M5598_17630 PF02378 Phosphotransferase system, EIIC M5598_17630 PF00367 phosphotransferase system, EIIB M5598_17635 PF00356 Bacterial regulatory proteins, lacI family M5598_17640 PF02264 LamB porin M5598_17640 PF11471 Maltoporin periplasmic N-terminal extension M5598_17685 PF01497 Periplasmic binding protein M5598_17685 PF12833 Helix-turn-helix domain M5598_17690 PF00155 Aminotransferase class I and II M5598_17710 PF00270 DEAD/DEAH box helicase M5598_17710 PF00271 Helicase conserved C-terminal domain M5598_17720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_17720 PF03466 LysR substrate binding domain M5598_17725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_17725 PF03466 LysR substrate binding domain M5598_17735 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M5598_17740 PF08240 Alcohol dehydrogenase GroES-like domain M5598_17740 PF00107 Zinc-binding dehydrogenase M5598_17755 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term M5598_17755 PF12833 Helix-turn-helix domain M5598_17760 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) M5598_17775 PF03466 LysR substrate binding domain M5598_17775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_17780 PF00709 Adenylosuccinate synthetase M5598_17785 PF13542 Helix-turn-helix domain of transposase family ISL3 M5598_17785 PF01610 Transposase M5598_17785 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 M5598_17790 PF00710 Asparaginase, N-terminal M5598_17790 PF17763 Glutaminase/Asparaginase C-terminal domain M5598_17795 PF03618 Kinase/pyrophosphorylase M5598_17800 PF00391 PEP-utilising enzyme, mobile domain M5598_17800 PF02896 PEP-utilising enzyme, TIM barrel domain M5598_17800 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain M5598_17815 PF00579 tRNA synthetases class I (W and Y) M5598_17820 PF13416 Bacterial extracellular solute-binding protein M5598_17830 PF03466 LysR substrate binding domain M5598_17830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_17835 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M5598_17840 PF00873 AcrB/AcrD/AcrF family M5598_17855 PF07694 5TMR of 5TMR-LYT M5598_17855 PF00990 Diguanylate cyclase, GGDEF domain M5598_17865 PF00196 Bacterial regulatory proteins, luxR family M5598_17870 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 M5598_17870 PF00703 Glycosyl hydrolases family 2 M5598_17870 PF02836 Glycosyl hydrolases family 2, TIM barrel domain M5598_17870 PF02837 Glycosyl hydrolases family 2, sugar binding domain M5598_17875 PF02028 BCCT, betaine/carnitine/choline family transporter M5598_17880 PF00392 Bacterial regulatory proteins, gntR family M5598_17880 PF07702 UTRA domain M5598_17905 PF00005 ABC transporter M5598_17905 PF08402 TOBE domain M5598_17945 PF00873 AcrB/AcrD/AcrF family M5598_17950 PF13533 Biotin-lipoyl like M5598_17955 PF13091 PLD-like domain M5598_17980 PF09278 MerR, DNA binding M5598_17980 PF00376 MerR family regulatory protein M5598_17990 PF03466 LysR substrate binding domain M5598_17990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_18000 PF13378 Enolase C-terminal domain-like M5598_18000 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M5598_18005 PF00009 Elongation factor Tu GTP binding domain M5598_18005 PF00679 Elongation factor G C-terminus M5598_18005 PF14492 Elongation Factor G, domain II M5598_18005 PF03764 Elongation factor G, domain IV M5598_18005 PF03144 Elongation factor Tu domain 2 M5598_18030 PF02001 Protein of unknown function DUF134 M5598_18035 PF17185 NlpE C-terminal OB domain M5598_18035 PF04170 NlpE N-terminal domain M5598_18040 PF06629 MltA-interacting protein MipA M5598_18050 PF00691 OmpA family M5598_18050 PF01389 OmpA-like transmembrane domain M5598_18055 PF03466 LysR substrate binding domain M5598_18055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_18075 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain M5598_18075 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family M5598_18085 PF00857 Isochorismatase family M5598_18095 PF06628 Catalase-related immune-responsive M5598_18095 PF00199 Catalase M5598_18105 PF08220 DeoR-like helix-turn-helix domain M5598_18105 PF00455 DeoR C terminal sensor domain M5598_18110 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M5598_18115 PF01625 Peptide methionine sulfoxide reductase M5598_18115 PF01641 SelR domain M5598_18130 PF17678 Glycosyl hydrolase family 92 N-terminal domain M5598_18130 PF07971 Glycosyl hydrolase family 92 M5598_18135 PF07971 Glycosyl hydrolase family 92 M5598_18135 PF17678 Glycosyl hydrolase family 92 N-terminal domain M5598_18145 PF07971 Glycosyl hydrolase family 92 M5598_18145 PF17678 Glycosyl hydrolase family 92 N-terminal domain M5598_18150 PF07971 Glycosyl hydrolase family 92 M5598_18150 PF17678 Glycosyl hydrolase family 92 N-terminal domain M5598_18155 PF03060 Nitronate monooxygenase M5598_18160 PF00149 Calcineurin-like phosphoesterase M5598_18160 PF02872 5'-nucleotidase, C-terminal domain M5598_18170 PF00440 Bacterial regulatory proteins, tetR family M5598_18170 PF08359 YsiA-like protein, C-terminal region M5598_18185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_18185 PF03466 LysR substrate binding domain M5598_18190 PF01810 LysE type translocator M5598_18205 PF00118 TCP-1/cpn60 chaperonin family M5598_18210 PF00166 Chaperonin 10 Kd subunit M5598_18215 PF00581 Rhodanese-like domain M5598_18230 PF01070 FMN-dependent dehydrogenase M5598_18250 PF00669 Bacterial flagellin N-terminal helical region M5598_18260 PF10135 Rod binding protein M5598_18260 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase M5598_18265 PF02119 Flagellar P-ring protein M5598_18270 PF02107 Flagellar L-ring protein M5598_18275 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M5598_18275 PF00460 Flagella basal body rod protein M5598_18280 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M5598_18280 PF00460 Flagella basal body rod protein M5598_18285 PF07559 Flagellar basal body protein FlaE M5598_18285 PF00460 Flagella basal body rod protein M5598_18285 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M5598_18290 PF03963 Flagellar hook capping protein - N-terminal region M5598_18290 PF13861 FlgD Tudor-like domain M5598_18290 PF13860 FlgD Ig-like domain M5598_18295 PF00460 Flagella basal body rod protein M5598_18295 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M5598_18300 PF00460 Flagella basal body rod protein M5598_18320 PF01464 Transglycosylase SLT domain M5598_18325 PF08264 Anticodon-binding domain of tRNA M5598_18325 PF00133 tRNA synthetases class I (I, L, M and V) M5598_18345 PF03313 Serine dehydratase alpha chain M5598_18345 PF03315 Serine dehydratase beta chain M5598_18350 PF00854 POT family M5598_18360 PF03466 LysR substrate binding domain M5598_18360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_18370 PF03466 LysR substrate binding domain M5598_18370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_18375 PF01389 OmpA-like transmembrane domain M5598_18375 PF00691 OmpA family M5598_18380 PF18027 Cytosolic carboxypeptidase N-terminal domain M5598_18380 PF00246 Zinc carboxypeptidase M5598_18385 PF01266 FAD dependent oxidoreductase M5598_18410 PF00392 Bacterial regulatory proteins, gntR family M5598_18410 PF07702 UTRA domain M5598_18415 PF00528 Binding-protein-dependent transport system inner membrane component M5598_18420 PF00005 ABC transporter M5598_18435 PF00266 Aminotransferase class-V M5598_18440 PF00202 Aminotransferase class-III M5598_18445 PF13419 Haloacid dehalogenase-like hydrolase M5598_18450 PF00356 Bacterial regulatory proteins, lacI family M5598_18455 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M5598_18465 PF03611 PTS system sugar-specific permease component M5598_18475 PF05922 Peptidase inhibitor I9 M5598_18475 PF00082 Subtilase family M5598_18480 PF00657 GDSL-like Lipase/Acylhydrolase M5598_18485 PF02321 Outer membrane efflux protein M5598_18490 PF02687 FtsX-like permease family M5598_18490 PF12704 MacB-like periplasmic core domain M5598_18490 PF00005 ABC transporter M5598_18495 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M5598_18500 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) M5598_18505 PF00194 Eukaryotic-type carbonic anhydrase M5598_18510 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) M5598_18525 PF13419 Haloacid dehalogenase-like hydrolase M5598_18530 PF03466 LysR substrate binding domain M5598_18530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_18565 PF14602 Hexapeptide repeat of succinyl-transferase M5598_18565 PF12464 Maltose acetyltransferase M5598_18570 PF02566 OsmC-like protein M5598_18575 PF01625 Peptide methionine sulfoxide reductase M5598_18575 PF01641 SelR domain M5598_18590 PF04244 Deoxyribodipyrimidine photo-lyase-related protein M5598_18595 PF00875 DNA photolyase M5598_18595 PF03441 FAD binding domain of DNA photolyase M5598_18600 PF00990 Diguanylate cyclase, GGDEF domain M5598_18615 PF12729 Four helix bundle sensory module for signal transduction M5598_18615 PF00672 HAMP domain M5598_18615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M5598_18620 PF05230 MASE2 domain M5598_18620 PF00990 Diguanylate cyclase, GGDEF domain M5598_18635 PF07670 Nucleoside recognition M5598_18635 PF01773 Na+ dependent nucleoside transporter N-terminus M5598_18635 PF07662 Na+ dependent nucleoside transporter C-terminus M5598_18650 PF01212 Beta-eliminating lyase M5598_18660 PF01266 FAD dependent oxidoreductase M5598_18675 PF05525 Branched-chain amino acid transport protein M5598_18680 PF00990 Diguanylate cyclase, GGDEF domain M5598_18680 PF08448 PAS fold M5598_18685 PF02954 Bacterial regulatory protein, Fis family M5598_18685 PF00072 Response regulator receiver domain M5598_18685 PF00158 Sigma-54 interaction domain M5598_18690 PF00512 His Kinase A (phospho-acceptor) domain M5598_18690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_18700 PF00232 Glycosyl hydrolase family 1 M5598_18715 PF01610 Transposase M5598_18715 PF13542 Helix-turn-helix domain of transposase family ISL3 M5598_18715 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 M5598_18730 PF03466 LysR substrate binding domain M5598_18730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_18735 PF08443 RimK-like ATP-grasp domain M5598_18735 PF18030 RimK PreATP-grasp domain M5598_18740 PF18030 RimK PreATP-grasp domain M5598_18740 PF08443 RimK-like ATP-grasp domain M5598_18745 PF00753 Metallo-beta-lactamase superfamily M5598_18750 PF17944 Arginine decarboxylase C-terminal helical extension M5598_18750 PF17810 Arginine decarboxylase helical bundle domain M5598_18750 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain M5598_18755 PF00491 Arginase family M5598_18760 PF07690 Major Facilitator Superfamily M5598_18765 PF00326 Prolyl oligopeptidase family M5598_18765 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain M5598_18780 PF00950 ABC 3 transport family M5598_18785 PF00005 ABC transporter M5598_18790 PF01297 Zinc-uptake complex component A periplasmic M5598_18830 PF02472 Biopolymer transport protein ExbD/TolR M5598_18835 PF01618 MotA/TolQ/ExbB proton channel family M5598_18840 PF01618 MotA/TolQ/ExbB proton channel family M5598_18850 PF00593 TonB dependent receptor M5598_18850 PF07715 TonB-dependent Receptor Plug Domain M5598_18855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_18855 PF00512 His Kinase A (phospho-acceptor) domain M5598_18855 PF16750 Sensor domain of 2-component histidine kinase M5598_18855 PF00672 HAMP domain M5598_18860 PF00486 Transcriptional regulatory protein, C terminal M5598_18860 PF00072 Response regulator receiver domain M5598_18865 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain M5598_18865 PF00056 lactate/malate dehydrogenase, NAD binding domain M5598_18870 PF03009 Glycerophosphoryl diester phosphodiesterase family M5598_18880 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M5598_18880 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M5598_18885 PF10928 Protein of unknown function (DUF2810) M5598_18890 PF12833 Helix-turn-helix domain M5598_18890 PF12852 Cupin M5598_18895 PF12706 Beta-lactamase superfamily domain M5598_18900 PF02899 Phage integrase, N-terminal SAM-like domain M5598_18900 PF00589 Phage integrase family M5598_18905 PF07693 KAP family P-loop domain M5598_18970 PF04013 Putative SAM-dependent RNA methyltransferase M5598_18975 PF01523 Putative modulator of DNA gyrase M5598_18980 PF01523 Putative modulator of DNA gyrase M5598_18985 PF08543 Phosphomethylpyrimidine kinase M5598_18990 PF00005 ABC transporter M5598_18995 PF00528 Binding-protein-dependent transport system inner membrane component M5598_19000 PF09084 NMT1/THI5 like M5598_19005 PF03070 TENA/THI-4/PQQC family M5598_19010 PF02110 Hydroxyethylthiazole kinase family M5598_19015 PF02581 Thiamine monophosphate synthase M5598_19025 PF00384 Molybdopterin oxidoreductase M5598_19025 PF18364 Molybdopterin oxidoreductase N-terminal domain M5598_19025 PF01568 Molydopterin dinucleotide binding domain M5598_19030 PF03264 NapC/NirT cytochrome c family, N-terminal region M5598_19055 PF00583 Acetyltransferase (GNAT) family M5598_19075 PF00155 Aminotransferase class I and II M5598_19075 PF00392 Bacterial regulatory proteins, gntR family M5598_19080 PF02595 Glycerate kinase family M5598_19085 PF02447 GntP family permease M5598_19090 PF05651 Putative sugar diacid recognition M5598_19090 PF17853 GGDEF-like domain M5598_19090 PF13556 PucR C-terminal helix-turn-helix domain M5598_19125 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M5598_19130 PF01661 Macro domain M5598_19135 PF01204 Trehalase M5598_19145 PF12706 Beta-lactamase superfamily domain M5598_19155 PF07690 Major Facilitator Superfamily M5598_19160 PF13533 Biotin-lipoyl like M5598_19165 PF03922 OmpW family M5598_19170 PF13599 Pentapeptide repeats (9 copies) M5598_19185 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading M5598_19185 PF18416 N-acetylglucosamine binding protein domain 2 M5598_19190 PF01037 Lrp/AsnC ligand binding domain M5598_19195 PF01810 LysE type translocator M5598_19200 PF00326 Prolyl oligopeptidase family M5598_19205 PF08021 Siderophore-interacting FAD-binding domain M5598_19205 PF04954 Siderophore-interacting protein M5598_19210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_19210 PF03466 LysR substrate binding domain M5598_19215 PF00797 N-acetyltransferase M5598_19220 PF08240 Alcohol dehydrogenase GroES-like domain M5598_19220 PF00107 Zinc-binding dehydrogenase M5598_19225 PF00756 Putative esterase M5598_19235 PF00990 Diguanylate cyclase, GGDEF domain M5598_19235 PF17152 Periplasmic sensor domain M5598_19250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_19250 PF03466 LysR substrate binding domain M5598_19265 PF00849 RNA pseudouridylate synthase M5598_19270 PF01554 MatE M5598_19275 PF00990 Diguanylate cyclase, GGDEF domain M5598_19275 PF00563 EAL domain M5598_19285 PF06865 Pyrimidine/purine nucleoside phosphorylase M5598_19295 PF08329 Chitinase A, N-terminal domain M5598_19295 PF00704 Glycosyl hydrolases family 18 M5598_19315 PF03600 Citrate transporter M5598_19325 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 M5598_19335 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M5598_19335 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M5598_19340 PF06029 AlkA N-terminal domain M5598_19340 PF00730 HhH-GPD superfamily base excision DNA repair protein M5598_19350 PF07681 DoxX M5598_19355 PF17954 Quercetinase C-terminal cupin domain M5598_19355 PF02678 Pirin M5598_19360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_19360 PF03466 LysR substrate binding domain M5598_19375 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase M5598_19385 PF03616 Sodium/glutamate symporter M5598_19390 PF00155 Aminotransferase class I and II M5598_19390 PF00392 Bacterial regulatory proteins, gntR family M5598_19395 PF00005 ABC transporter M5598_19405 PF03616 Sodium/glutamate symporter M5598_19410 PF00132 Bacterial transferase hexapeptide (six repeats) M5598_19425 PF17200 Single Cache domain 2 M5598_19425 PF00672 HAMP domain M5598_19425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M5598_19430 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M5598_19440 PF04397 LytTr DNA-binding domain M5598_19440 PF00072 Response regulator receiver domain M5598_19445 PF06580 Histidine kinase M5598_19445 PF13492 GAF domain M5598_19445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_19445 PF07694 5TMR of 5TMR-LYT M5598_19465 PF00005 ABC transporter M5598_19475 PF01098 Cell cycle protein M5598_19480 PF01709 Transcriptional regulator M5598_19490 PF01627 Hpt domain M5598_19490 PF00072 Response regulator receiver domain M5598_19490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_19490 PF00672 HAMP domain M5598_19490 PF17149 Periplasmic sensor domain found in signal transduction proteins M5598_19490 PF00512 His Kinase A (phospho-acceptor) domain M5598_19500 PF00925 GTP cyclohydrolase II M5598_19500 PF08719 Domain of unknown function (DUF1768) M5598_19510 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M5598_19510 PF00005 ABC transporter M5598_19515 PF00005 ABC transporter M5598_19515 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M5598_19525 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 M5598_19525 PF01610 Transposase M5598_19525 PF13542 Helix-turn-helix domain of transposase family ISL3 M5598_19535 PF13614 AAA domain M5598_19535 PF18607 ParA helix turn helix domain M5598_19540 PF02195 ParB-like nuclease domain M5598_19540 PF08775 ParB family M5598_19545 PF13718 GNAT acetyltransferase 2 M5598_19545 PF05127 Helicase M5598_19555 PF00132 Bacterial transferase hexapeptide (six repeats) M5598_19560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_19560 PF03466 LysR substrate binding domain M5598_19565 PF03575 Peptidase family S51 M5598_19570 PF00267 Gram-negative porin M5598_19575 PF02378 Phosphotransferase system, EIIC M5598_19575 PF00367 phosphotransferase system, EIIB M5598_19580 PF01380 SIS domain M5598_19585 PF01418 Helix-turn-helix domain, rpiR family M5598_19585 PF01380 SIS domain M5598_19590 PF00246 Zinc carboxypeptidase M5598_19595 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M5598_19600 PF03358 NADPH-dependent FMN reductase M5598_19610 PF03412 Peptidase C39 family M5598_19610 PF00664 ABC transporter transmembrane region M5598_19610 PF00005 ABC transporter M5598_19625 PF00529 HlyD membrane-fusion protein of T1SS M5598_19630 PF02954 Bacterial regulatory protein, Fis family M5598_19630 PF00072 Response regulator receiver domain M5598_19630 PF00158 Sigma-54 interaction domain M5598_19635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_19635 PF02743 Cache domain M5598_19635 PF00512 His Kinase A (phospho-acceptor) domain M5598_19640 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region M5598_19640 PF01243 Pyridoxamine 5'-phosphate oxidase M5598_19650 PF12833 Helix-turn-helix domain M5598_19655 PF00171 Aldehyde dehydrogenase family M5598_19655 PF01619 Proline dehydrogenase M5598_19655 PF14850 DNA-binding domain of Proline dehydrogenase M5598_19655 PF18327 Proline utilization A proline dehydrogenase N-terminal domain M5598_19665 PF00474 Sodium:solute symporter family M5598_19700 PF01037 Lrp/AsnC ligand binding domain M5598_19710 PF00005 ABC transporter M5598_19710 PF00664 ABC transporter transmembrane region M5598_19735 PF10688 Bacterial inner membrane protein M5598_19740 PF01081 KDPG and KHG aldolase M5598_19745 PF00294 pfkB family carbohydrate kinase M5598_19750 PF02614 Glucuronate isomerase M5598_19755 PF01232 Mannitol dehydrogenase Rossmann domain M5598_19755 PF08125 Mannitol dehydrogenase C-terminal domain M5598_19760 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component M5598_19765 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component M5598_19770 PF03480 Bacterial extracellular solute-binding protein, family 7 M5598_19775 PF07729 FCD domain M5598_19775 PF00392 Bacterial regulatory proteins, gntR family M5598_19780 PF03786 D-mannonate dehydratase (UxuA) M5598_19785 PF00271 Helicase conserved C-terminal domain M5598_19785 PF00270 DEAD/DEAH box helicase M5598_19790 PF03475 3-alpha domain M5598_19790 PF03473 MOSC domain M5598_19805 PF11975 Family 4 glycosyl hydrolase C-terminal domain M5598_19805 PF02056 Family 4 glycosyl hydrolase M5598_19810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_19810 PF03466 LysR substrate binding domain M5598_19815 PF02743 Cache domain M5598_19815 PF00672 HAMP domain M5598_19815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M5598_19825 PF08281 Sigma-70, region 4 M5598_19825 PF04542 Sigma-70 region 2 M5598_19830 PF12833 Helix-turn-helix domain M5598_19830 PF01965 DJ-1/PfpI family M5598_19835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_19835 PF03466 LysR substrate binding domain M5598_19860 PF07992 Pyridine nucleotide-disulphide oxidoreductase M5598_19860 PF13192 Thioredoxin domain M5598_19865 PF10417 C-terminal domain of 1-Cys peroxiredoxin M5598_19865 PF00578 AhpC/TSA family M5598_19870 PF01047 MarR family M5598_19875 PF02566 OsmC-like protein M5598_19890 PF12833 Helix-turn-helix domain M5598_19890 PF02311 AraC-like ligand binding domain M5598_19900 PF11762 L-arabinose isomerase C-terminal domain M5598_19900 PF02610 L-arabinose isomerase M5598_19905 PF00596 Class II Aldolase and Adducin N-terminal domain M5598_19910 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M5598_19910 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M5598_19915 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M5598_19920 PF00005 ABC transporter M5598_19925 PF02653 Branched-chain amino acid transport system / permease component M5598_19930 PF01136 Peptidase family U32 M5598_19940 PF02378 Phosphotransferase system, EIIC M5598_19940 PF00367 phosphotransferase system, EIIB M5598_19945 PF00072 Response regulator receiver domain M5598_19945 PF00486 Transcriptional regulatory protein, C terminal M5598_19950 PF08521 Two-component sensor kinase N-terminal M5598_19950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_19950 PF00512 His Kinase A (phospho-acceptor) domain M5598_19955 PF01547 Bacterial extracellular solute-binding protein M5598_19960 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain M5598_19960 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain M5598_19965 PF06276 Ferric iron reductase FhuF-like transporter M5598_19965 PF04183 IucA / IucC family M5598_19975 PF06276 Ferric iron reductase FhuF-like transporter M5598_19975 PF04183 IucA / IucC family M5598_19980 PF00206 Lyase M5598_19980 PF02655 ATP-grasp domain M5598_19985 PF00593 TonB dependent receptor M5598_19985 PF07715 TonB-dependent Receptor Plug Domain M5598_19990 PF07715 TonB-dependent Receptor Plug Domain M5598_19990 PF07660 Secretin and TonB N terminus short domain M5598_19990 PF00593 TonB dependent receptor M5598_19995 PF01497 Periplasmic binding protein M5598_20000 PF01032 FecCD transport family M5598_20005 PF01032 FecCD transport family M5598_20010 PF00005 ABC transporter M5598_20015 PF17200 Single Cache domain 2 M5598_20015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M5598_20015 PF00672 HAMP domain M5598_20020 PF00675 Insulinase (Peptidase family M16) M5598_20020 PF05193 Peptidase M16 inactive domain M5598_20030 PF04225 Opacity-associated protein A LysM-like domain M5598_20030 PF01551 Peptidase family M23 M5598_20040 PF07690 Major Facilitator Superfamily M5598_20050 PF00128 Alpha amylase, catalytic domain M5598_20050 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) M5598_20055 PF02264 LamB porin M5598_20070 PF16657 Maltogenic Amylase, C-terminal domain M5598_20070 PF00128 Alpha amylase, catalytic domain M5598_20070 PF02903 Alpha amylase, N-terminal ig-like domain M5598_20075 PF04231 Endonuclease I M5598_20080 PF17967 Pullulanase N2 domain M5598_20080 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) M5598_20080 PF11852 Domain of unknown function (DUF3372) M5598_20080 PF03714 Bacterial pullanase-associated domain M5598_20080 PF18494 Pullulanase Ins domain M5598_20095 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain M5598_20095 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain M5598_20095 PF01276 Orn/Lys/Arg decarboxylase, major domain M5598_20100 PF13520 Amino acid permease M5598_20110 PF08543 Phosphomethylpyrimidine kinase M5598_20120 PF00375 Sodium:dicarboxylate symporter family M5598_20125 PF03193 RsgA GTPase M5598_20130 PF00367 phosphotransferase system, EIIB M5598_20130 PF02378 Phosphotransferase system, EIIC M5598_20140 PF02630 SCO1/SenC M5598_20155 PF17874 MalT-like TPR region M5598_20155 PF00196 Bacterial regulatory proteins, luxR family M5598_20165 PF00343 Carbohydrate phosphorylase M5598_20170 PF02446 4-alpha-glucanotransferase M5598_20175 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) M5598_20175 PF02806 Alpha amylase, C-terminal all-beta domain M5598_20175 PF00128 Alpha amylase, catalytic domain M5598_20180 PF00912 Transglycosylase M5598_20185 PF00128 Alpha amylase, catalytic domain M5598_20200 PF07670 Nucleoside recognition M5598_20205 PF07670 Nucleoside recognition M5598_20210 PF01546 Peptidase family M20/M25/M40 M5598_20210 PF07687 Peptidase dimerisation domain M5598_20215 PF06803 Protein of unknown function (DUF1232) M5598_20220 PF00375 Sodium:dicarboxylate symporter family M5598_20230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_20230 PF03466 LysR substrate binding domain M5598_20235 PF08803 Putative mono-oxygenase ydhR M5598_20250 PF00881 Nitroreductase family M5598_20255 PF01914 MarC family integral membrane protein M5598_20260 PF01734 Patatin-like phospholipase M5598_20265 PF18416 N-acetylglucosamine binding protein domain 2 M5598_20265 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading M5598_20270 PF00581 Rhodanese-like domain M5598_20270 PF17773 UPF0176 acylphosphatase like domain M5598_20280 PF00561 alpha/beta hydrolase fold M5598_20285 PF07943 Penicillin-binding protein 5, C-terminal domain M5598_20285 PF00768 D-alanyl-D-alanine carboxypeptidase M5598_20290 PF00686 Starch binding domain M5598_20290 PF00128 Alpha amylase, catalytic domain M5598_20295 PF12833 Helix-turn-helix domain M5598_20295 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term M5598_20300 PF00881 Nitroreductase family M5598_20310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_20310 PF03466 LysR substrate binding domain M5598_20315 PF09905 DNA-binding protein VF530 M5598_20325 PF00970 Oxidoreductase FAD-binding domain M5598_20325 PF00175 Oxidoreductase NAD-binding domain M5598_20335 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) M5598_20340 PF01594 AI-2E family transporter M5598_20350 PF13533 Biotin-lipoyl like M5598_20370 PF00892 EamA-like transporter family M5598_20375 PF03466 LysR substrate binding domain M5598_20375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_20380 PF07690 Major Facilitator Superfamily M5598_20390 PF00583 Acetyltransferase (GNAT) family M5598_20400 PF00923 Transaldolase/Fructose-6-phosphate aldolase M5598_20405 PF04055 Radical SAM superfamily M5598_20410 PF02901 Pyruvate formate lyase-like M5598_20410 PF01228 Glycine radical M5598_20430 PF08000 Bacterial PH domain M5598_20440 PF00691 OmpA family M5598_20440 PF13677 Membrane MotB of proton-channel complex MotA/MotB M5598_20445 PF01618 MotA/TolQ/ExbB proton channel family M5598_20450 PF04545 Sigma-70, region 4 M5598_20450 PF04542 Sigma-70 region 2 M5598_20455 PF03748 Flagellar basal body-associated protein FliL M5598_20470 PF02561 Flagellar protein FliS M5598_20475 PF07195 Flagellar hook-associated protein 2 C-terminus M5598_20475 PF07196 Flagellin hook IN motif M5598_20475 PF02465 Flagellar hook-associated protein 2 N-terminus M5598_20490 PF00700 Bacterial flagellin C-terminal helical region M5598_20490 PF00669 Bacterial flagellin N-terminal helical region M5598_20500 PF00771 FHIPEP family M5598_20505 PF01312 FlhB HrpN YscU SpaS Family M5598_20510 PF01311 Bacterial export proteins, family 1 M5598_20515 PF01313 Bacterial export proteins, family 3 M5598_20520 PF00813 FliP family M5598_20525 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M5598_20540 PF00158 Sigma-54 interaction domain M5598_20540 PF00072 Response regulator receiver domain M5598_20540 PF02954 Bacterial regulatory protein, Fis family M5598_20545 PF02049 Flagellar hook-basal body complex protein FliE M5598_20550 PF01514 Secretory protein of YscJ/FliF family M5598_20550 PF08345 Flagellar M-ring protein C-terminal M5598_20555 PF01706 FliG C-terminal domain M5598_20555 PF14841 FliG middle domain M5598_20555 PF14842 FliG N-terminal domain M5598_20565 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M5598_20565 PF18269 T3SS EscN ATPase C-terminal domain M5598_20580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_20580 PF03466 LysR substrate binding domain M5598_20615 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M5598_20620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_20620 PF03466 LysR substrate binding domain M5598_20640 PF00072 Response regulator receiver domain M5598_20640 PF00486 Transcriptional regulatory protein, C terminal M5598_20645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_20645 PF00512 His Kinase A (phospho-acceptor) domain M5598_20645 PF08448 PAS fold M5598_20645 PF13426 PAS domain M5598_20645 PF00072 Response regulator receiver domain M5598_20650 PF00080 Copper/zinc superoxide dismutase (SODC) M5598_20655 PF00266 Aminotransferase class-V M5598_20660 PF00497 Bacterial extracellular solute-binding proteins, family 3 M5598_20665 PF00990 Diguanylate cyclase, GGDEF domain M5598_20665 PF03707 Bacterial signalling protein N terminal repeat M5598_20665 PF00563 EAL domain M5598_20670 PF00155 Aminotransferase class I and II M5598_20675 PF00107 Zinc-binding dehydrogenase M5598_20675 PF08240 Alcohol dehydrogenase GroES-like domain M5598_20705 PF00194 Eukaryotic-type carbonic anhydrase M5598_20710 PF00924 Mechanosensitive ion channel M5598_20720 PF01070 FMN-dependent dehydrogenase M5598_20725 PF02652 L-lactate permease M5598_20730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_20730 PF03466 LysR substrate binding domain M5598_20735 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain M5598_20735 PF00326 Prolyl oligopeptidase family M5598_20740 PF00005 ABC transporter M5598_20740 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M5598_20750 PF13654 AAA domain M5598_20750 PF05362 Lon protease (S16) C-terminal proteolytic domain M5598_20755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M5598_20755 PF00672 HAMP domain M5598_20760 PF07238 PilZ domain M5598_20760 PF12945 Flagellar protein YcgR M5598_20775 PF00583 Acetyltransferase (GNAT) family M5598_20780 PF12800 4Fe-4S binding domain M5598_20780 PF12838 4Fe-4S dicluster domain M5598_20785 PF13237 4Fe-4S dicluster domain M5598_20785 PF12801 4Fe-4S binding domain M5598_20800 PF00005 ABC transporter M5598_20800 PF12558 ATP-binding cassette cobalt transporter M5598_20805 PF07155 ECF-type riboflavin transporter, S component M5598_20810 PF00529 HlyD membrane-fusion protein of T1SS M5598_20810 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M5598_20815 PF11742 Protein of unknown function (DUF3302) M5598_20820 PF00990 Diguanylate cyclase, GGDEF domain M5598_20835 PF01048 Phosphorylase superfamily M5598_20840 PF08349 Protein of unknown function (DUF1722) M5598_20845 PF13411 MerR HTH family regulatory protein M5598_20850 PF00875 DNA photolyase M5598_20850 PF03441 FAD binding domain of DNA photolyase M5598_20855 PF03734 L,D-transpeptidase catalytic domain M5598_20855 PF17969 L,D-transpeptidase C-terminal domain M5598_20855 PF01476 LysM domain M5598_20865 PF00270 DEAD/DEAH box helicase M5598_20865 PF00271 Helicase conserved C-terminal domain M5598_20870 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain M5598_20870 PF00326 Prolyl oligopeptidase family M5598_20875 PF07715 TonB-dependent Receptor Plug Domain M5598_20875 PF00593 TonB dependent receptor M5598_20895 PF00672 HAMP domain M5598_20895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M5598_20900 PF12849 PBP superfamily domain M5598_20905 PF00528 Binding-protein-dependent transport system inner membrane component M5598_20910 PF00528 Binding-protein-dependent transport system inner membrane component M5598_20915 PF00005 ABC transporter M5598_20930 PF07584 Aerotolerance regulator N-terminal M5598_20930 PF13519 von Willebrand factor type A domain M5598_20935 PF13519 von Willebrand factor type A domain M5598_20945 PF01882 Protein of unknown function DUF58 M5598_20950 PF17863 AAA lid domain M5598_20950 PF07726 ATPase family associated with various cellular activities (AAA) M5598_20955 PF02743 Cache domain M5598_20955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M5598_20955 PF00672 HAMP domain M5598_20965 PF00196 Bacterial regulatory proteins, luxR family M5598_20970 PF00196 Bacterial regulatory proteins, luxR family M5598_20980 PF00005 ABC transporter M5598_20980 PF00664 ABC transporter transmembrane region M5598_20985 PF00529 HlyD membrane-fusion protein of T1SS M5598_20995 PF01032 FecCD transport family M5598_21000 PF01497 Periplasmic binding protein M5598_21005 PF00005 ABC transporter M5598_21010 PF07715 TonB-dependent Receptor Plug Domain M5598_21010 PF00593 TonB dependent receptor M5598_21015 PF00005 ABC transporter M5598_21015 PF00664 ABC transporter transmembrane region M5598_21020 PF13493 Domain of unknown function (DUF4118) M5598_21020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_21020 PF00512 His Kinase A (phospho-acceptor) domain M5598_21020 PF02702 Osmosensitive K+ channel His kinase sensor domain M5598_21020 PF13493 Domain of unknown function (DUF4118) M5598_21020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_21020 PF00512 His Kinase A (phospho-acceptor) domain M5598_21020 PF02702 Osmosensitive K+ channel His kinase sensor domain M5598_21025 PF00486 Transcriptional regulatory protein, C terminal M5598_21025 PF00072 Response regulator receiver domain M5598_21030 PF02254 TrkA-N domain M5598_21030 PF02080 TrkA-C domain M5598_21035 PF02386 Cation transport protein M5598_21040 PF03707 Bacterial signalling protein N terminal repeat M5598_21040 PF00563 EAL domain M5598_21040 PF00990 Diguanylate cyclase, GGDEF domain M5598_21045 PF00127 Copper binding proteins, plastocyanin/azurin family M5598_21050 PF13419 Haloacid dehalogenase-like hydrolase M5598_21060 PF01238 Phosphomannose isomerase type I M5598_21065 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M5598_21065 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M5598_21070 PF12833 Helix-turn-helix domain M5598_21080 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M5598_21090 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M5598_21090 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M5598_21095 PF00199 Catalase M5598_21095 PF06628 Catalase-related immune-responsive M5598_21100 PF13417 Glutathione S-transferase, N-terminal domain M5598_21105 PF00107 Zinc-binding dehydrogenase M5598_21105 PF16884 N-terminal domain of oxidoreductase M5598_21110 PF00440 Bacterial regulatory proteins, tetR family M5598_21110 PF16925 Tetracyclin repressor-like, C-terminal domain M5598_21115 PF04266 ASCH domain M5598_21145 PF00534 Glycosyl transferases group 1 M5598_21145 PF13439 Glycosyltransferase Family 4 M5598_21155 PF02706 Chain length determinant protein M5598_21155 PF13807 G-rich domain on putative tyrosine kinase M5598_21155 PF13614 AAA domain M5598_21170 PF02397 Bacterial sugar transferase M5598_21175 PF00005 ABC transporter M5598_21175 PF08402 TOBE domain M5598_21180 PF01547 Bacterial extracellular solute-binding protein M5598_21185 PF00528 Binding-protein-dependent transport system inner membrane component M5598_21185 PF14785 Maltose transport system permease protein MalF P2 domain M5598_21190 PF00528 Binding-protein-dependent transport system inner membrane component M5598_21220 PF05661 Protein of unknown function (DUF808) M5598_21225 PF01979 Amidohydrolase family M5598_21230 PF01679 Proteolipid membrane potential modulator M5598_21235 PF03473 MOSC domain M5598_21235 PF03476 MOSC N-terminal beta barrel domain M5598_21235 PF00111 2Fe-2S iron-sulfur cluster binding domain M5598_21235 PF03473 MOSC domain M5598_21235 PF03476 MOSC N-terminal beta barrel domain M5598_21235 PF00111 2Fe-2S iron-sulfur cluster binding domain M5598_21240 PF02540 NAD synthase M5598_21245 PF01467 Cytidylyltransferase-like M5598_21285 PF00005 ABC transporter M5598_21290 PF01032 FecCD transport family M5598_21300 PF02472 Biopolymer transport protein ExbD/TolR M5598_21305 PF01618 MotA/TolQ/ExbB proton channel family M5598_21310 PF03544 Gram-negative bacterial TonB protein C-terminal M5598_21315 PF04055 Radical SAM superfamily M5598_21320 PF06228 Haem utilisation ChuX/HutX M5598_21325 PF01243 Pyridoxamine 5'-phosphate oxidase M5598_21335 PF00072 Response regulator receiver domain M5598_21335 PF01584 CheW-like domain M5598_21350 PF00561 alpha/beta hydrolase fold M5598_21360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_21360 PF03466 LysR substrate binding domain M5598_21365 PF00082 Subtilase family M5598_21385 PF00141 Peroxidase M5598_21390 PF00210 Ferritin-like domain M5598_21395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_21395 PF03466 LysR substrate binding domain M5598_21410 PF01752 Collagenase M5598_21410 PF08453 Peptidase family M9 N-terminal M5598_21410 PF04151 Bacterial pre-peptidase C-terminal domain M5598_21420 PF00128 Alpha amylase, catalytic domain M5598_21435 PF02254 TrkA-N domain M5598_21435 PF00999 Sodium/hydrogen exchanger family M5598_21440 PF02525 Flavodoxin-like fold M5598_21445 PF00582 Universal stress protein family M5598_21450 PF00005 ABC transporter M5598_21450 PF16326 ABC transporter C-terminal domain M5598_21450 PF12848 ABC transporter M5598_21455 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain M5598_21455 PF00326 Prolyl oligopeptidase family M5598_21465 PF13533 Biotin-lipoyl like M5598_21470 PF00873 AcrB/AcrD/AcrF family M5598_21475 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) M5598_21485 PF13302 Acetyltransferase (GNAT) domain M5598_21495 PF00990 Diguanylate cyclase, GGDEF domain M5598_21515 PF00873 AcrB/AcrD/AcrF family M5598_21535 PF01568 Molydopterin dinucleotide binding domain M5598_21535 PF00384 Molybdopterin oxidoreductase M5598_21535 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region M5598_21535 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M5598_21535 PF12838 4Fe-4S dicluster domain M5598_21555 PF00005 ABC transporter M5598_21565 PF00672 HAMP domain M5598_21565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M5598_21570 PF10282 Lactonase, 7-bladed beta-propeller M5598_21575 PF02567 Phenazine biosynthesis-like protein M5598_21580 PF01161 Phosphatidylethanolamine-binding protein M5598_21590 PF01758 Sodium Bile acid symporter family M5598_21605 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M5598_21610 PF02378 Phosphotransferase system, EIIC M5598_21610 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M5598_21615 PF00107 Zinc-binding dehydrogenase M5598_21615 PF08240 Alcohol dehydrogenase GroES-like domain M5598_21650 PF03222 Tryptophan/tyrosine permease family M5598_21660 PF02743 Cache domain M5598_21660 PF00672 HAMP domain M5598_21660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M5598_21665 PF07670 Nucleoside recognition M5598_21685 PF01476 LysM domain M5598_21685 PF08525 Opacity-associated protein A N-terminal motif M5598_21685 PF01551 Peptidase family M23 M5598_21690 PF00563 EAL domain M5598_21690 PF00990 Diguanylate cyclase, GGDEF domain M5598_21690 PF08447 PAS fold M5598_21690 PF08448 PAS fold M5598_21695 PF03466 LysR substrate binding domain M5598_21695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_21700 PF07690 Major Facilitator Superfamily M5598_21710 PF00462 Glutaredoxin M5598_21715 PF00892 EamA-like transporter family M5598_21720 PF00267 Gram-negative porin M5598_21730 PF01557 Fumarylacetoacetate (FAA) hydrolase family M5598_21745 PF12833 Helix-turn-helix domain M5598_21750 PF01810 LysE type translocator M5598_21760 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M5598_21760 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M5598_21760 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M5598_21760 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M5598_21765 PF02790 Cytochrome C oxidase subunit II, transmembrane domain M5598_21765 PF00116 Cytochrome C oxidase subunit II, periplasmic domain M5598_21770 PF00115 Cytochrome C and Quinol oxidase polypeptide I M5598_21775 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 M5598_21780 PF00510 Cytochrome c oxidase subunit III M5598_21800 PF02628 Cytochrome oxidase assembly protein M5598_21805 PF01040 UbiA prenyltransferase family M5598_21810 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M5598_21810 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M5598_21840 PF00313 'Cold-shock' DNA-binding domain M5598_21845 PF03889 Alternative ribosome-rescue factor A M5598_21850 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 M5598_21850 PF13542 Helix-turn-helix domain of transposase family ISL3 M5598_21850 PF01610 Transposase M5598_21855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M5598_21855 PF00672 HAMP domain M5598_21865 PF00990 Diguanylate cyclase, GGDEF domain M5598_21880 PF00005 ABC transporter M5598_21880 PF02687 FtsX-like permease family M5598_21880 PF12704 MacB-like periplasmic core domain M5598_21885 PF00005 ABC transporter M5598_21885 PF02687 FtsX-like permease family M5598_21885 PF12704 MacB-like periplasmic core domain M5598_21895 PF17200 Single Cache domain 2 M5598_21895 PF00672 HAMP domain M5598_21895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M5598_21900 PF00210 Ferritin-like domain M5598_21910 PF07995 Glucose / Sorbosone dehydrogenase M5598_21915 PF00465 Iron-containing alcohol dehydrogenase M5598_21930 PF00892 EamA-like transporter family M5598_21945 PF03466 LysR substrate binding domain M5598_21945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_21955 PF00501 AMP-binding enzyme M5598_21955 PF13193 AMP-binding enzyme C-terminal domain M5598_21960 PF00351 Biopterin-dependent aromatic amino acid hydroxylase M5598_21965 PF01329 Pterin 4 alpha carbinolamine dehydratase M5598_21985 PF12843 Putative quorum-sensing-regulated virulence factor M5598_21990 PF00270 DEAD/DEAH box helicase M5598_21990 PF00271 Helicase conserved C-terminal domain M5598_21995 PF09905 DNA-binding protein VF530 M5598_22000 PF00291 Pyridoxal-phosphate dependent enzyme M5598_22010 PF01470 Pyroglutamyl peptidase M5598_22020 PF07683 Cobalamin synthesis protein cobW C-terminal domain M5598_22020 PF02492 CobW/HypB/UreG, nucleotide-binding domain M5598_22025 PF00271 Helicase conserved C-terminal domain M5598_22025 PF00270 DEAD/DEAH box helicase M5598_22045 PF12792 CSS motif domain associated with EAL M5598_22045 PF00563 EAL domain M5598_22050 PF00005 ABC transporter M5598_22055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M5598_22055 PF12729 Four helix bundle sensory module for signal transduction M5598_22055 PF00672 HAMP domain M5598_22065 PF03466 LysR substrate binding domain M5598_22065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_22070 PF00884 Sulfatase M5598_22075 PF04055 Radical SAM superfamily M5598_22075 PF13186 Iron-sulfur cluster-binding domain M5598_22080 PF03466 LysR substrate binding domain M5598_22080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_22090 PF01575 MaoC like domain M5598_22095 PF12849 PBP superfamily domain M5598_22105 PF12833 Helix-turn-helix domain M5598_22110 PF00575 S1 RNA binding domain M5598_22110 PF00773 RNB domain M5598_22110 PF08206 Ribonuclease B OB domain M5598_22115 PF03880 DbpA RNA binding domain M5598_22115 PF00270 DEAD/DEAH box helicase M5598_22115 PF00271 Helicase conserved C-terminal domain M5598_22120 PF00563 EAL domain M5598_22120 PF00990 Diguanylate cyclase, GGDEF domain M5598_22120 PF13426 PAS domain M5598_22125 PF00871 Acetokinase family M5598_22130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M5598_22130 PF08447 PAS fold M5598_22130 PF13426 PAS domain M5598_22140 PF10063 Uncharacterized integral membrane protein (DUF2301) M5598_22145 PF00682 HMGL-like M5598_22150 PF00378 Enoyl-CoA hydratase/isomerase M5598_22155 PF01039 Carboxyl transferase domain M5598_22160 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M5598_22160 PF02770 Acyl-CoA dehydrogenase, middle domain M5598_22160 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M5598_22165 PF00376 MerR family regulatory protein M5598_22165 PF09278 MerR, DNA binding M5598_22170 PF02803 Thiolase, C-terminal domain M5598_22170 PF00108 Thiolase, N-terminal domain M5598_22175 PF00171 Aldehyde dehydrogenase family M5598_22180 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M5598_22180 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M5598_22180 PF02770 Acyl-CoA dehydrogenase, middle domain M5598_22185 PF00378 Enoyl-CoA hydratase/isomerase M5598_22190 PF00378 Enoyl-CoA hydratase/isomerase M5598_22195 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M5598_22195 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M5598_22205 PF00116 Cytochrome C oxidase subunit II, periplasmic domain M5598_22205 PF06481 COX Aromatic Rich Motif M5598_22210 PF00115 Cytochrome C and Quinol oxidase polypeptide I M5598_22215 PF00510 Cytochrome c oxidase subunit III M5598_22225 PF01040 UbiA prenyltransferase family M5598_22235 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M5598_22240 PF08031 Berberine and berberine like M5598_22240 PF01565 FAD binding domain M5598_22245 PF00005 ABC transporter M5598_22250 PF00497 Bacterial extracellular solute-binding proteins, family 3 M5598_22255 PF00528 Binding-protein-dependent transport system inner membrane component M5598_22260 PF00528 Binding-protein-dependent transport system inner membrane component M5598_22270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_22270 PF03466 LysR substrate binding domain M5598_22275 PF00043 Glutathione S-transferase, C-terminal domain M5598_22275 PF02798 Glutathione S-transferase, N-terminal domain M5598_22285 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M5598_22285 PF00364 Biotin-requiring enzyme M5598_22285 PF02817 e3 binding domain M5598_22290 PF02780 Transketolase, C-terminal domain M5598_22290 PF02779 Transketolase, pyrimidine binding domain M5598_22295 PF00676 Dehydrogenase E1 component M5598_22310 PF00012 Hsp70 protein M5598_22315 PF04314 Copper chaperone PCu(A)C M5598_22340 PF00072 Response regulator receiver domain M5598_22340 PF00486 Transcriptional regulatory protein, C terminal M5598_22355 PF00245 Alkaline phosphatase M5598_22365 PF00082 Subtilase family M5598_22365 PF01483 Proprotein convertase P-domain M5598_22375 PF00990 Diguanylate cyclase, GGDEF domain M5598_22375 PF00072 Response regulator receiver domain M5598_22380 PF03222 Tryptophan/tyrosine permease family M5598_22385 PF00583 Acetyltransferase (GNAT) family M5598_22390 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M5598_22390 PF01568 Molydopterin dinucleotide binding domain M5598_22390 PF00384 Molybdopterin oxidoreductase M5598_22395 PF14824 Sirohaem biosynthesis protein central M5598_22395 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M5598_22395 PF10414 Sirohaem synthase dimerisation region M5598_22400 PF02885 Glycosyl transferase family, helical bundle domain M5598_22400 PF00591 Glycosyl transferase family, a/b domain M5598_22405 PF01738 Dienelactone hydrolase family M5598_22410 PF03861 ANTAR domain M5598_22410 PF08376 Nitrate and nitrite sensing M5598_22420 PF00528 Binding-protein-dependent transport system inner membrane component M5598_22425 PF00005 ABC transporter M5598_22430 PF04324 BFD-like [2Fe-2S] binding domain M5598_22430 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M5598_22430 PF07992 Pyridine nucleotide-disulphide oxidoreductase M5598_22430 PF18267 Rubredoxin NAD+ reductase C-terminal domain M5598_22430 PF13806 Rieske-like [2Fe-2S] domain M5598_22430 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M5598_22445 PF00440 Bacterial regulatory proteins, tetR family M5598_22445 PF08361 MAATS-type transcriptional repressor, C-terminal region M5598_22460 PF00072 Response regulator receiver domain M5598_22460 PF00211 Adenylate and Guanylate cyclase catalytic domain M5598_22485 PF03793 PASTA domain M5598_22485 PF00069 Protein kinase domain M5598_22500 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE M5598_22505 PF13677 Membrane MotB of proton-channel complex MotA/MotB M5598_22505 PF00691 OmpA family M5598_22510 PF14331 ImcF-related N-terminal domain M5598_22510 PF06744 Type VI secretion protein IcmF C-terminal M5598_22510 PF06761 Intracellular multiplication and human macrophage-killing M5598_22530 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 M5598_22535 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath M5598_22540 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath M5598_22555 PF05947 Type VI secretion system, TssF M5598_22565 PF00004 ATPase family associated with various cellular activities (AAA) M5598_22565 PF07724 AAA domain (Cdc48 subfamily) M5598_22565 PF17871 AAA lid domain M5598_22565 PF10431 C-terminal, D2-small domain, of ClpB protein M5598_22575 PF06715 Gp5 C-terminal repeat (3 copies) M5598_22575 PF04717 Type VI secretion system, phage-baseplate injector M5598_22590 PF12320 Type 5 capsule protein repressor C-terminal domain M5598_22590 PF00149 Calcineurin-like phosphoesterase M5598_22595 PF13476 AAA domain M5598_22615 PF08212 Lipocalin-like domain M5598_22625 PF07690 Major Facilitator Superfamily M5598_22635 PF00072 Response regulator receiver domain M5598_22635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_22640 PF00155 Aminotransferase class I and II M5598_22645 PF01926 50S ribosome-binding GTPase M5598_22690 PF09456 RcsC Alpha-Beta-Loop (ABL) M5598_22690 PF00512 His Kinase A (phospho-acceptor) domain M5598_22690 PF00072 Response regulator receiver domain M5598_22690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_22695 PF00563 EAL domain M5598_22695 PF00990 Diguanylate cyclase, GGDEF domain M5598_22695 PF13188 PAS domain M5598_22695 PF03707 Bacterial signalling protein N terminal repeat M5598_22700 PF00196 Bacterial regulatory proteins, luxR family M5598_22700 PF00072 Response regulator receiver domain M5598_22705 PF00990 Diguanylate cyclase, GGDEF domain M5598_22715 PF00196 Bacterial regulatory proteins, luxR family M5598_22715 PF00072 Response regulator receiver domain M5598_22735 PF00072 Response regulator receiver domain M5598_22735 PF01584 CheW-like domain M5598_22750 PF00892 EamA-like transporter family M5598_22760 PF01569 PAP2 superfamily M5598_22770 PF03606 C4-dicarboxylate anaerobic carrier M5598_22775 PF00034 Cytochrome c M5598_22780 PF01212 Beta-eliminating lyase M5598_22790 PF17868 AAA lid domain M5598_22790 PF12592 Protein of unknown function (DUF3763) M5598_22790 PF07728 AAA domain (dynein-related subfamily) M5598_22795 PF05762 VWA domain containing CoxE-like protein M5598_22810 PF03466 LysR substrate binding domain M5598_22810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_22815 PF01565 FAD binding domain M5598_22815 PF09330 D-lactate dehydrogenase, membrane binding M5598_22830 PF01168 Alanine racemase, N-terminal domain M5598_22830 PF00842 Alanine racemase, C-terminal domain M5598_22835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M5598_22835 PF00672 HAMP domain M5598_22850 PF00128 Alpha amylase, catalytic domain M5598_22850 PF09154 Domain of unknown function (DUF1939) M5598_22870 PF06965 Na+/H+ antiporter 1 M5598_22870 PF13462 Thioredoxin M5598_22905 PF01272 Transcription elongation factor, GreA/GreB, C-term M5598_22905 PF14760 Rnk N-terminus M5598_22910 PF04324 BFD-like [2Fe-2S] binding domain M5598_22910 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M5598_22910 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M5598_22910 PF07992 Pyridine nucleotide-disulphide oxidoreductase M5598_22910 PF18267 Rubredoxin NAD+ reductase C-terminal domain M5598_22915 PF13806 Rieske-like [2Fe-2S] domain M5598_22920 PF01226 Formate/nitrite transporter M5598_22925 PF10414 Sirohaem synthase dimerisation region M5598_22925 PF14824 Sirohaem biosynthesis protein central M5598_22925 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M5598_22940 PF03605 Anaerobic c4-dicarboxylate membrane transporter M5598_22950 PF00593 TonB dependent receptor M5598_22950 PF07715 TonB-dependent Receptor Plug Domain M5598_22965 PF11756 Nitrous oxide-stimulated promoter M5598_22970 PF01554 MatE M5598_22975 PF00072 Response regulator receiver domain M5598_22975 PF07494 Two component regulator propeller M5598_22975 PF12833 Helix-turn-helix domain M5598_22975 PF00512 His Kinase A (phospho-acceptor) domain M5598_22975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_22975 PF07495 Y_Y_Y domain M5598_22980 PF07690 Major Facilitator Superfamily M5598_22985 PF00085 Thioredoxin M5598_22990 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M5598_22990 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M5598_23010 PF01238 Phosphomannose isomerase type I M5598_23015 PF07690 Major Facilitator Superfamily M5598_23020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_23020 PF07730 Histidine kinase M5598_23020 PF05231 MASE1 M5598_23025 PF00196 Bacterial regulatory proteins, luxR family M5598_23025 PF00072 Response regulator receiver domain M5598_23030 PF07690 Major Facilitator Superfamily M5598_23035 PF02634 FdhD/NarQ family M5598_23040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_23040 PF03466 LysR substrate binding domain M5598_23045 PF00384 Molybdopterin oxidoreductase M5598_23050 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M5598_23050 PF07992 Pyridine nucleotide-disulphide oxidoreductase M5598_23065 PF04143 Sulphur transport M5598_23075 PF00873 AcrB/AcrD/AcrF family M5598_23080 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M5598_23090 PF13597 Anaerobic ribonucleoside-triphosphate reductase M5598_23090 PF03477 ATP cone domain M5598_23100 PF01554 MatE M5598_23105 PF12833 Helix-turn-helix domain M5598_23110 PF00155 Aminotransferase class I and II M5598_23115 PF08443 RimK-like ATP-grasp domain M5598_23115 PF18030 RimK PreATP-grasp domain M5598_23125 PF04076 Bacterial OB fold (BOF) protein M5598_23130 PF07685 CobB/CobQ-like glutamine amidotransferase domain M5598_23140 PF00528 Binding-protein-dependent transport system inner membrane component M5598_23145 PF03459 TOBE domain M5598_23145 PF00005 ABC transporter M5598_23155 PF00990 Diguanylate cyclase, GGDEF domain M5598_23155 PF00563 EAL domain M5598_23155 PF01590 GAF domain M5598_23155 PF00360 Phytochrome region M5598_23165 PF00990 Diguanylate cyclase, GGDEF domain M5598_23180 PF01262 Alanine dehydrogenase/PNT, C-terminal domain M5598_23180 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch M5598_23180 PF05222 Alanine dehydrogenase/PNT, N-terminal domain M5598_23185 PF02233 NAD(P) transhydrogenase beta subunit M5598_23195 PF00486 Transcriptional regulatory protein, C terminal M5598_23195 PF00072 Response regulator receiver domain M5598_23210 PF03701 Uncharacterised protein family (UPF0181) M5598_23215 PF00582 Universal stress protein family M5598_23230 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 M5598_23230 PF01610 Transposase M5598_23230 PF13542 Helix-turn-helix domain of transposase family ISL3 M5598_23260 PF05707 Zonular occludens toxin (Zot) M5598_23305 PF01253 Translation initiation factor SUI1 M5598_23315 PF07478 D-ala D-ala ligase C-terminus M5598_23315 PF01820 D-ala D-ala ligase N-terminus M5598_23325 PF00583 Acetyltransferase (GNAT) family M5598_23325 PF13380 CoA binding domain M5598_23325 PF13607 Succinyl-CoA ligase like flavodoxin domain M5598_23330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_23330 PF03466 LysR substrate binding domain M5598_23335 PF04886 PT repeat M5598_23335 PF00593 TonB dependent receptor M5598_23335 PF07715 TonB-dependent Receptor Plug Domain M5598_23340 PF16363 GDP-mannose 4,6 dehydratase M5598_23345 PF00563 EAL domain M5598_23345 PF13426 PAS domain M5598_23345 PF00990 Diguanylate cyclase, GGDEF domain M5598_23345 PF08448 PAS fold M5598_23345 PF08447 PAS fold M5598_23345 PF05231 MASE1 M5598_23350 PF03746 LamB/YcsF family M5598_23355 PF02682 Carboxyltransferase domain, subdomain C and D M5598_23360 PF02626 Carboxyltransferase domain, subdomain A and B M5598_23375 PF00005 ABC transporter M5598_23380 PF13472 GDSL-like Lipase/Acylhydrolase family M5598_23385 PF12241 Trans-2-enoyl-CoA reductase catalytic region M5598_23385 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase M5598_23385 PF07055 Enoyl reductase FAD binding domain M5598_23390 PF13188 PAS domain M5598_23390 PF03707 Bacterial signalling protein N terminal repeat M5598_23390 PF00990 Diguanylate cyclase, GGDEF domain M5598_23390 PF00563 EAL domain M5598_23400 PF00684 DnaJ central domain M5598_23400 PF01556 DnaJ C terminal domain M5598_23400 PF00226 DnaJ domain M5598_23425 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M5598_23425 PF12793 Sugar transport-related sRNA regulator N-term M5598_23435 PF03061 Thioesterase superfamily M5598_23450 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) M5598_23455 PF12262 Bacterial virulence factor lipase N-terminal M5598_23470 PF03741 Integral membrane protein TerC family M5598_23475 PF00149 Calcineurin-like phosphoesterase M5598_23475 PF02872 5'-nucleotidase, C-terminal domain M5598_23480 PF11398 Protein of unknown function (DUF2813) M5598_23485 PF06496 Protein of unknown function (DUF1097) M5598_23490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M5598_23490 PF03466 LysR substrate binding domain M5598_23495 PF01226 Formate/nitrite transporter M5598_23500 PF04264 YceI-like domain M5598_23505 PF01292 Prokaryotic cytochrome b561 M5598_23520 PF12792 CSS motif domain associated with EAL M5598_23520 PF00563 EAL domain M5598_23525 PF00271 Helicase conserved C-terminal domain M5598_23525 PF00270 DEAD/DEAH box helicase M5598_23530 PF04336 Acyl carrier protein phosphodiesterase M5598_23535 PF00672 HAMP domain M5598_23535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M5598_23540 PF13419 Haloacid dehalogenase-like hydrolase M5598_23545 PF11849 Domain of unknown function (DUF3369) M5598_23560 PF00294 pfkB family carbohydrate kinase M5598_23565 PF01268 Formate--tetrahydrofolate ligase M5598_23570 PF00483 Nucleotidyl transferase M5598_23575 PF00704 Glycosyl hydrolases family 18 M5598_23575 PF06483 Chitinase C M5598_23580 PF12833 Helix-turn-helix domain M5598_23580 PF06719 AraC-type transcriptional regulator N-terminus M5598_23585 PF00465 Iron-containing alcohol dehydrogenase M5598_23595 PF02954 Bacterial regulatory protein, Fis family M5598_23595 PF00072 Response regulator receiver domain M5598_23595 PF14532 Sigma-54 interaction domain M5598_23600 PF00672 HAMP domain M5598_23600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M5598_23600 PF00512 His Kinase A (phospho-acceptor) domain M5598_23610 PF07690 Major Facilitator Superfamily M5598_23645 PF13533 Biotin-lipoyl like M5598_23760 PF01926 50S ribosome-binding GTPase M5598_23760 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal M5598_23775 PF12323 Helix-turn-helix domain M5598_23815 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family M5598_23835 PF01594 AI-2E family transporter M5598_23945 PF02600 Disulfide bond formation protein DsbB M5598_23950 PF00436 Single-strand binding protein family M5598_24045 PF00149 Calcineurin-like phosphoesterase M5598_24050 PF06965 Na+/H+ antiporter 1 M5598_24125 PF09179 TilS substrate binding domain M5598_24125 PF01171 PP-loop family M5598_24125 PF11734 TilS substrate C-terminal domain M5598_24130 PF00145 C-5 cytosine-specific DNA methylase M5598_24130 PF13411 MerR HTH family regulatory protein M5598_24150 PF01693 Caulimovirus viroplasmin M5598_24205 PF02464 Competence-damaged protein M5598_24205 PF00994 Probable molybdopterin binding domain M5598_24235 PF02631 RecX family M5598_24245 PF01027 Inhibitor of apoptosis-promoting Bax1 M5598_24270 PF00464 Serine hydroxymethyltransferase M5598_24275 PF11202 Phosphoribosyl transferase (PRTase) M5598_24275 PF15608 PELOTA RNA binding domain M5598_24400 PF01219 Prokaryotic diacylglycerol kinase M5598_24405 PF08019 Phosphoethanolamine transferase EptA/EptB M5598_24405 PF00884 Sulfatase M5598_24415 PF11798 IMS family HHH motif M5598_24415 PF11799 impB/mucB/samB family C-terminal domain M5598_24415 PF00817 impB/mucB/samB family M5598_24415 PF13438 Domain of unknown function (DUF4113) M5598_24475 PF00334 Nucleoside diphosphate kinase M5598_24545 PF12323 Helix-turn-helix domain M5598_24620 PF01367 5'-3' exonuclease, C-terminal SAM fold M5598_24620 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M5598_24620 PF00476 DNA polymerase family A M5598_24620 PF01612 3'-5' exonuclease M5598_24660 PF00303 Thymidylate synthase M5598_24730 PF02146 Sir2 family M5598_24765 PF00216 Bacterial DNA-binding protein M5598_24775 PF03167 Uracil DNA glycosylase superfamily M5598_24860 PF10138 vWA found in TerF C terminus M5598_24865 PF02601 Exonuclease VII, large subunit M5598_24865 PF13742 OB-fold nucleic acid binding domain M5598_24880 PF00186 Dihydrofolate reductase M5598_25125 PF01668 SmpB protein M5598_25135 PF00691 OmpA family M5598_25165 PF00216 Bacterial DNA-binding protein M5598_25205 PF00816 H-NS histone family M5598_25215 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein M5598_25240 PF01653 NAD-dependent DNA ligase adenylation domain M5598_25240 PF03120 NAD-dependent DNA ligase OB-fold domain M5598_25240 PF03119 NAD-dependent DNA ligase C4 zinc finger domain M5598_25240 PF12826 Helix-hairpin-helix motif M5598_25240 PF00533 BRCA1 C Terminus (BRCT) domain M5598_25250 PF01592 NifU-like N terminal domain M5598_25255 PF01521 Iron-sulphur cluster biosynthesis M5598_25270 PF00265 Thymidine kinase M5598_25295 PF12792 CSS motif domain associated with EAL M5598_25295 PF00563 EAL domain M5598_25315 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain M5598_25315 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family M5598_25320 PF01467 Cytidylyltransferase-like M5598_25325 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase M5598_25360 PF02086 D12 class N6 adenine-specific DNA methyltransferase M5598_25380 PF04264 YceI-like domain M5598_25385 PF01292 Prokaryotic cytochrome b561 M5598_25410 PF00317 Ribonucleotide reductase, all-alpha domain M5598_25410 PF03477 ATP cone domain M5598_25410 PF02867 Ribonucleotide reductase, barrel domain M5598_25415 PF00268 Ribonucleotide reductase, small chain M5598_25435 PF02342 TerD domain M5598_25450 PF15608 PELOTA RNA binding domain M5598_25450 PF11202 Phosphoribosyl transferase (PRTase) M5598_25465 PF02342 TerD domain M5598_25470 PF02342 TerD domain M5598_25480 PF18073 Rubredoxin metal binding domain M5598_25505 PF00563 EAL domain M5598_25505 PF08668 HDOD domain M5598_25520 PF00990 Diguanylate cyclase, GGDEF domain M5598_25835 PF00580 UvrD/REP helicase N-terminal domain M5598_25835 PF13361 UvrD-like helicase C-terminal domain M5598_25850 PF00266 Aminotransferase class-V M5598_25950 PF04362 Bacterial Fe(2+) trafficking M5598_26030 PF03461 TRCF domain M5598_26030 PF00270 DEAD/DEAH box helicase M5598_26030 PF17757 UvrB interaction domain M5598_26030 PF02559 CarD-like/TRCF domain M5598_26030 PF00271 Helicase conserved C-terminal domain M5598_26050 PF06750 Bacterial Peptidase A24 N-terminal domain M5598_26050 PF01478 Type IV leader peptidase family M5598_26085 PF00211 Adenylate and Guanylate cyclase catalytic domain M5598_26095 PF02810 SEC-C motif M5598_26095 PF07517 SecA DEAD-like domain M5598_26095 PF01043 SecA preprotein cross-linking domain M5598_26095 PF07516 SecA Wing and Scaffold domain M5598_26105 PF01966 HD domain M5598_26125 PF02463 RecF/RecN/SMC N terminal domain M5598_26160 PF04381 Putative exonuclease, RdgC M5598_26230 PF00437 Type II/IV secretion system protein M5598_26260 PF02223 Thymidylate kinase M5598_26265 PF09382 RQC domain M5598_26265 PF00270 DEAD/DEAH box helicase M5598_26265 PF00271 Helicase conserved C-terminal domain M5598_26265 PF00570 HRDC domain M5598_26265 PF16124 RecQ zinc-binding M5598_26275 PF13538 UvrD-like helicase C-terminal domain M5598_26285 PF17768 RecJ OB domain M5598_26285 PF01368 DHH family M5598_26285 PF02272 DHHA1 domain M5598_26305 PF17820 PDZ domain M5598_26305 PF02163 Peptidase family M50 M5598_26315 PF00929 Exonuclease M5598_26320 PF00772 DnaB-like helicase N terminal domain M5598_26320 PF03796 DnaB-like helicase C terminal domain M5598_26325 PF01336 OB-fold nucleic acid binding domain M5598_26325 PF07733 Bacterial DNA polymerase III alpha NTPase domain M5598_26325 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M5598_26325 PF14579 Helix-hairpin-helix motif M5598_26325 PF02811 PHP domain M5598_26340 PF01521 Iron-sulphur cluster biosynthesis M5598_26345 PF17191 RecG wedge domain M5598_26345 PF00271 Helicase conserved C-terminal domain M5598_26345 PF00270 DEAD/DEAH box helicase M5598_26365 PF05231 MASE1 M5598_26365 PF00563 EAL domain M5598_26370 PF01751 Toprim domain M5598_26370 PF01131 DNA topoisomerase M5598_26380 PF13361 UvrD-like helicase C-terminal domain M5598_26380 PF00580 UvrD/REP helicase N-terminal domain M5598_26390 PF02463 RecF/RecN/SMC N terminal domain M5598_26430 PF01367 5'-3' exonuclease, C-terminal SAM fold M5598_26430 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M5598_26430 PF00476 DNA polymerase family A M5598_26450 PF01396 Topoisomerase DNA binding C4 zinc finger M5598_26450 PF01751 Toprim domain M5598_26450 PF01131 DNA topoisomerase M5598_26495 PF00929 Exonuclease M5598_26495 PF08411 Exonuclease C-terminal M5598_26545 PF13186 Iron-sulfur cluster-binding domain M5598_26545 PF04055 Radical SAM superfamily M5598_26555 PF00437 Type II/IV secretion system protein M5598_26555 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M5598_26570 PF00437 Type II/IV secretion system protein M5598_26585 PF07655 Secretin N-terminal domain M5598_26585 PF00263 Bacterial type II and III secretion system protein M5598_26595 PF00437 Type II/IV secretion system protein M5598_26660 PF00154 recA bacterial DNA recombination protein M5598_26845 PF08534 Redoxin M5598_26845 PF00462 Glutaredoxin M5598_27100 PF01661 Macro domain M5598_27180 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M5598_27180 PF00437 Type II/IV secretion system protein M5598_27195 PF13657 HipA N-terminal domain M5598_27195 PF07804 HipA-like C-terminal domain M5598_27325 PF02631 RecX family M5598_27330 PF00672 HAMP domain M5598_27330 PF12729 Four helix bundle sensory module for signal transduction M5598_27330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M5598_27395 PF03144 Elongation factor Tu domain 2 M5598_27395 PF03143 Elongation factor Tu C-terminal domain M5598_27395 PF00009 Elongation factor Tu GTP binding domain M5598_27400 PF06463 Molybdenum Cofactor Synthesis C M5598_27400 PF04055 Radical SAM superfamily M5598_27410 PF00550 Phosphopantetheine attachment site M5598_27465 PF13307 Helicase C-terminal domain M5598_27465 PF06733 DEAD_2 M5598_27505 PF01381 Helix-turn-helix M5598_27625 PF00293 NUDIX domain M5598_27760 PF00816 H-NS histone family M5598_27805 PF00293 NUDIX domain M5598_27815 PF01569 PAP2 superfamily M5598_27820 PF01569 PAP2 superfamily M5598_27855 PF00436 Single-strand binding protein family M5598_28030 PF00113 Enolase, C-terminal TIM barrel domain M5598_28030 PF03952 Enolase, N-terminal domain M5598_28080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M5598_28080 PF00672 HAMP domain M5598_28080 PF02743 Cache domain M5598_28210 PF05360 yiaA/B two helix domain M5598_28365 PF00005 ABC transporter M5598_28605 PF03477 ATP cone domain M5598_28605 PF13597 Anaerobic ribonucleoside-triphosphate reductase M5598_28855 PF00625 Guanylate kinase M5598_29005 PF02195 ParB-like nuclease domain M5598_29005 PF18090 Centromere-binding protein HTH domain M5598_29020 PF02146 Sir2 family M5598_29060 PF03741 Integral membrane protein TerC family M5598_29095 PF03747 ADP-ribosylglycohydrolase M5598_29120 PF01595 Cyclin M transmembrane N-terminal domain M5598_29120 PF00571 CBS domain M5598_29165 PF00216 Bacterial DNA-binding protein M5598_29170 PF00462 Glutaredoxin M5598_29175 PF13614 AAA domain M5598_29205 PF01228 Glycine radical M5598_29235 PF01966 HD domain M5598_29235 PF01743 Poly A polymerase head domain M5598_29235 PF12627 Probable RNA and SrmB- binding site of polymerase A M5598_29270 PF00313 'Cold-shock' DNA-binding domain