locus-tag class description IHE41_00005 PF00154 recA bacterial DNA recombination protein IHE41_00010 PF02631 RecX family IHE41_00015 PF02272 DHHA1 domain IHE41_00015 PF01411 tRNA synthetases class II (A) IHE41_00015 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IHE41_00020 PF00696 Amino acid kinase family IHE41_00020 PF01842 ACT domain IHE41_00020 PF13840 ACT domain IHE41_00025 PF02599 Global regulator protein family IHE41_00085 PF04277 Oxaloacetate decarboxylase, gamma chain IHE41_00090 PF00364 Biotin-requiring enzyme IHE41_00090 PF00682 HMGL-like IHE41_00090 PF02436 Conserved carboxylase domain IHE41_00095 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit IHE41_00100 PF08240 Alcohol dehydrogenase GroES-like domain IHE41_00100 PF00107 Zinc-binding dehydrogenase IHE41_00105 PF09335 SNARE associated Golgi protein IHE41_00110 PF00675 Insulinase (Peptidase family M16) IHE41_00110 PF05193 Peptidase M16 inactive domain IHE41_00115 PF04262 Glutamate-cysteine ligase IHE41_00125 PF02664 S-Ribosylhomocysteinase (LuxS) IHE41_00130 PF00571 CBS domain IHE41_00130 PF03471 Transporter associated domain IHE41_00130 PF01595 Cyclin M transmembrane N-terminal domain IHE41_00135 PF01578 Cytochrome C assembly protein IHE41_00140 PF00448 SRP54-type protein, GTPase domain IHE41_00140 PF02881 SRP54-type protein, helical bundle domain IHE41_00140 PF02978 Signal peptide binding domain IHE41_00145 PF00886 Ribosomal protein S16 IHE41_00150 PF01782 RimM N-terminal domain IHE41_00150 PF05239 PRC-barrel domain IHE41_00155 PF01746 tRNA (Guanine-1)-methyltransferase IHE41_00160 PF01245 Ribosomal protein L19 IHE41_00165 PF03884 DNA gyrase inhibitor YacG IHE41_00170 PF07072 Cell division protein IHE41_00175 PF01121 Dephospho-CoA kinase IHE41_00180 PF06750 Bacterial Peptidase A24 N-terminal domain IHE41_00180 PF01478 Type IV leader peptidase family IHE41_00185 PF00482 Type II secretion system (T2SS), protein F IHE41_00190 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain IHE41_00190 PF00437 Type II/IV secretion system protein IHE41_00195 PF07963 Prokaryotic N-terminal methylation motif IHE41_00195 PF00114 Pilin (bacterial filament) IHE41_00200 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain IHE41_00200 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain IHE41_00205 PF01510 N-acetylmuramoyl-L-alanine amidase IHE41_00210 PF07729 FCD domain IHE41_00210 PF00392 Bacterial regulatory proteins, gntR family IHE41_00215 PF00456 Transketolase, thiamine diphosphate binding domain IHE41_00215 PF17831 Pyruvate dehydrogenase E1 component middle domain IHE41_00220 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IHE41_00220 PF00364 Biotin-requiring enzyme IHE41_00220 PF02817 e3 binding domain IHE41_00225 PF07992 Pyridine nucleotide-disulphide oxidoreductase IHE41_00225 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IHE41_00230 PF00440 Bacterial regulatory proteins, tetR family IHE41_00235 PF00156 Phosphoribosyl transferase domain IHE41_00240 PF00484 Carbonic anhydrase IHE41_00245 PF00916 Sulfate permease family IHE41_00245 PF01740 STAS domain IHE41_00250 PF00005 ABC transporter IHE41_00255 PF01061 ABC-2 type transporter IHE41_00260 PF03279 Bacterial lipid A biosynthesis acyltransferase IHE41_00265 PF02569 Pantoate-beta-alanine ligase IHE41_00270 PF02548 Ketopantoate hydroxymethyltransferase IHE41_00275 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) IHE41_00280 PF01743 Poly A polymerase head domain IHE41_00280 PF12626 Polymerase A arginine-rich C-terminus IHE41_00280 PF12627 Probable RNA and SrmB- binding site of polymerase A IHE41_00285 PF00749 tRNA synthetases class I (E and Q), catalytic domain IHE41_00290 PF01258 Prokaryotic dksA/traR C4-type zinc finger IHE41_00295 PF17746 SfsA N-terminal OB domain IHE41_00295 PF03749 Sugar fermentation stimulation protein RE domain IHE41_00300 PF04408 Helicase associated domain (HA2) IHE41_00300 PF00270 DEAD/DEAH box helicase IHE41_00300 PF08482 ATP-dependent helicase C-terminal IHE41_00300 PF00271 Helicase conserved C-terminal domain IHE41_00305 PF14814 Bifunctional transglycosylase second domain IHE41_00305 PF00912 Transglycosylase IHE41_00305 PF00905 Penicillin binding protein transpeptidase domain IHE41_00310 PF01734 Patatin-like phospholipase IHE41_00315 PF00330 Aconitase family (aconitate hydratase) IHE41_00315 PF06434 Aconitate hydratase 2 N-terminus IHE41_00315 PF11791 Aconitate B N-terminal domain IHE41_00320 PF06062 Uncharacterised protein family (UPF0231) IHE41_00325 PF00543 Nitrogen regulatory protein P-II IHE41_00330 PF00909 Ammonium Transporter Family IHE41_00335 PF13416 Bacterial extracellular solute-binding protein IHE41_00345 PF08402 TOBE domain IHE41_00345 PF00005 ABC transporter IHE41_00350 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IHE41_00350 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IHE41_00350 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IHE41_00350 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IHE41_00355 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain IHE41_00355 PF06165 Glycosyltransferase family 36 IHE41_00360 PF00728 Glycosyl hydrolase family 20, catalytic domain IHE41_00360 PF02838 Glycosyl hydrolase family 20, domain 2 IHE41_00365 PF01869 BadF/BadG/BcrA/BcrD ATPase family IHE41_00375 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IHE41_00375 PF00005 ABC transporter IHE41_00380 PF00005 ABC transporter IHE41_00380 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IHE41_00385 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_00385 PF12911 N-terminal TM domain of oligopeptide transport permease C IHE41_00390 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_00395 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IHE41_00400 PF00497 Bacterial extracellular solute-binding proteins, family 3 IHE41_00400 PF00512 His Kinase A (phospho-acceptor) domain IHE41_00400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_00400 PF00072 Response regulator receiver domain IHE41_00405 PF08468 Methyltransferase small domain N-terminal IHE41_00405 PF05175 Methyltransferase small domain IHE41_00410 PF01594 AI-2E family transporter IHE41_00415 PF00202 Aminotransferase class-III IHE41_00420 PF01521 Iron-sulphur cluster biosynthesis IHE41_00430 PF00873 AcrB/AcrD/AcrF family IHE41_00435 PF01476 LysM domain IHE41_00435 PF08525 Opacity-associated protein A N-terminal motif IHE41_00435 PF01551 Peptidase family M23 IHE41_00440 PF00579 tRNA synthetases class I (W and Y) IHE41_00450 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family IHE41_00455 PF13609 Gram-negative porin IHE41_00460 PF01272 Transcription elongation factor, GreA/GreB, C-term IHE41_00460 PF03449 Transcription elongation factor, N-terminal IHE41_00465 PF01985 CRS1 / YhbY (CRM) domain IHE41_00470 PF01728 FtsJ-like methyltransferase IHE41_00475 PF17862 AAA+ lid domain IHE41_00475 PF06480 FtsH Extracellular IHE41_00475 PF00004 ATPase family associated with various cellular activities (AAA) IHE41_00475 PF01434 Peptidase family M41 IHE41_00480 PF00809 Pterin binding enzyme IHE41_00485 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IHE41_00485 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IHE41_00485 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IHE41_00485 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IHE41_00490 PF03840 Preprotein translocase SecG subunit IHE41_00505 PF02576 RimP N-terminal domain IHE41_00505 PF17384 RimP C-terminal SH3 domain IHE41_00510 PF08529 NusA N-terminal domain IHE41_00510 PF00575 S1 RNA binding domain IHE41_00510 PF13184 NusA-like KH domain IHE41_00515 PF11987 Translation-initiation factor 2 IHE41_00515 PF00009 Elongation factor Tu GTP binding domain IHE41_00515 PF08364 Bacterial translation initiation factor IF-2 associated region IHE41_00515 PF04760 Translation initiation factor IF-2, N-terminal region IHE41_00520 PF02033 Ribosome-binding factor A IHE41_00525 PF01509 TruB family pseudouridylate synthase (N terminal domain) IHE41_00525 PF16198 tRNA pseudouridylate synthase B C-terminal domain IHE41_00525 PF09157 Pseudouridine synthase II TruB, C-terminal IHE41_00530 PF00312 Ribosomal protein S15 IHE41_00535 PF00013 KH domain IHE41_00535 PF03725 3' exoribonuclease family, domain 2 IHE41_00535 PF00575 S1 RNA binding domain IHE41_00535 PF01138 3' exoribonuclease family, domain 1 IHE41_00535 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain IHE41_00540 PF13181 Tetratricopeptide repeat IHE41_00540 PF07719 Tetratricopeptide repeat IHE41_00550 PF01554 MatE IHE41_00555 PF01136 Peptidase family U32 IHE41_00560 PF01136 Peptidase family U32 IHE41_00565 PF00563 EAL domain IHE41_00565 PF00990 Diguanylate cyclase, GGDEF domain IHE41_00565 PF03707 Bacterial signalling protein N terminal repeat IHE41_00570 PF02036 SCP-2 sterol transfer family IHE41_00575 PF13508 Acetyltransferase (GNAT) domain IHE41_00595 PF00009 Elongation factor Tu GTP binding domain IHE41_00595 PF03144 Elongation factor Tu domain 2 IHE41_00595 PF16658 Class II release factor RF3, C-terminal domain IHE41_00605 PF01026 TatD related DNase IHE41_00610 PF07662 Na+ dependent nucleoside transporter C-terminus IHE41_00610 PF07670 Nucleoside recognition IHE41_00610 PF01773 Na+ dependent nucleoside transporter N-terminus IHE41_00615 PF01791 DeoC/LacD family aldolase IHE41_00620 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain IHE41_00620 PF02885 Glycosyl transferase family, helical bundle domain IHE41_00620 PF00591 Glycosyl transferase family, a/b domain IHE41_00625 PF01676 Metalloenzyme superfamily IHE41_00630 PF01048 Phosphorylase superfamily IHE41_00640 PF18429 Domain of unknown function (DUF5609) IHE41_00650 PF18073 Rubredoxin metal binding domain IHE41_00655 PF03764 Elongation factor G, domain IV IHE41_00655 PF00009 Elongation factor Tu GTP binding domain IHE41_00655 PF03144 Elongation factor Tu domain 2 IHE41_00655 PF14492 Elongation Factor G, domain II IHE41_00655 PF00679 Elongation factor G C-terminus IHE41_00660 PF03466 LysR substrate binding domain IHE41_00660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_00670 PF00501 AMP-binding enzyme IHE41_00675 PF02805 Metal binding domain of Ada IHE41_00675 PF12833 Helix-turn-helix domain IHE41_00700 PF04972 BON domain IHE41_00700 PF00263 Bacterial type II and III secretion system protein IHE41_00700 PF13629 Pilus formation protein N terminal region IHE41_00730 PF00437 Type II/IV secretion system protein IHE41_00760 PF03466 LysR substrate binding domain IHE41_00760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_00765 PF13520 Amino acid permease IHE41_00770 PF04074 YhcH/YjgK/YiaL IHE41_00775 PF02836 Glycosyl hydrolases family 2, TIM barrel domain IHE41_00775 PF00703 Glycosyl hydrolases family 2 IHE41_00775 PF16353 Domain of unknown function(DUF4981) IHE41_00775 PF02929 Beta galactosidase small chain IHE41_00775 PF02837 Glycosyl hydrolases family 2, sugar binding domain IHE41_00780 PF00356 Bacterial regulatory proteins, lacI family IHE41_00785 PF16363 GDP-mannose 4,6 dehydratase IHE41_00790 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain IHE41_00790 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain IHE41_00795 PF10509 Galactokinase galactose-binding signature IHE41_00795 PF08544 GHMP kinases C terminal IHE41_00795 PF00288 GHMP kinases N terminal domain IHE41_00800 PF01263 Aldose 1-epimerase IHE41_00805 PF00356 Bacterial regulatory proteins, lacI family IHE41_00820 PF00356 Bacterial regulatory proteins, lacI family IHE41_00825 PF01588 Putative tRNA binding domain IHE41_00845 PF01544 CorA-like Mg2+ transporter protein IHE41_00850 PF01266 FAD dependent oxidoreductase IHE41_00850 PF16901 C-terminal domain of alpha-glycerophosphate oxidase IHE41_00855 PF00455 DeoR C terminal sensor domain IHE41_00855 PF08220 DeoR-like helix-turn-helix domain IHE41_00860 PF02782 FGGY family of carbohydrate kinases, C-terminal domain IHE41_00860 PF00370 FGGY family of carbohydrate kinases, N-terminal domain IHE41_00865 PF00230 Major intrinsic protein IHE41_00870 PF07690 Major Facilitator Superfamily IHE41_00875 PF03009 Glycerophosphoryl diester phosphodiesterase family IHE41_00880 PF14602 Hexapeptide repeat of succinyl-transferase IHE41_00880 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle IHE41_00885 PF07130 YebG protein IHE41_00890 PF03466 LysR substrate binding domain IHE41_00890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_00900 PF11893 Domain of unknown function (DUF3413) IHE41_00900 PF00884 Sulfatase IHE41_00905 PF17946 RecC C-terminal domain IHE41_00910 PF12705 PD-(D/E)XK nuclease superfamily IHE41_00910 PF00580 UvrD/REP helicase N-terminal domain IHE41_00910 PF13361 UvrD-like helicase C-terminal domain IHE41_00915 PF13538 UvrD-like helicase C-terminal domain IHE41_00925 PF00696 Amino acid kinase family IHE41_00925 PF00583 Acetyltransferase (GNAT) family IHE41_00935 PF06725 3D domain IHE41_00935 PF03562 MltA specific insert domain IHE41_00940 PF00899 ThiF family IHE41_00945 PF02657 Fe-S metabolism associated domain IHE41_00950 PF17158 Membrane-associated sensor, integral membrane domain IHE41_00950 PF00990 Diguanylate cyclase, GGDEF domain IHE41_00955 PF00266 Aminotransferase class-V IHE41_00960 PF01965 DJ-1/PfpI family IHE41_00965 PF02558 Ketopantoate reductase PanE/ApbA IHE41_00965 PF08546 Ketopantoate reductase PanE/ApbA C terminal IHE41_00970 PF03502 Nucleoside-specific channel-forming protein, Tsx IHE41_00990 PF04542 Sigma-70 region 2 IHE41_00990 PF04545 Sigma-70, region 4 IHE41_01000 PF07690 Major Facilitator Superfamily IHE41_01005 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD IHE41_01010 PF08139 Prokaryotic membrane lipoprotein lipid attachment site IHE41_01010 PF03923 Uncharacterized lipoprotein IHE41_01015 PF05175 Methyltransferase small domain IHE41_01020 PF01722 BolA-like protein IHE41_01025 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) IHE41_01025 PF11973 NQRA C-terminal domain IHE41_01030 PF03116 NQR2, RnfD, RnfE family IHE41_01035 PF04205 FMN-binding domain IHE41_01040 PF02508 Rnf-Nqr subunit, membrane protein IHE41_01045 PF02508 Rnf-Nqr subunit, membrane protein IHE41_01050 PF00970 Oxidoreductase FAD-binding domain IHE41_01050 PF00111 2Fe-2S iron-sulfur cluster binding domain IHE41_01050 PF00175 Oxidoreductase NAD-binding domain IHE41_01055 PF02424 ApbE family IHE41_01070 PF11799 impB/mucB/samB family C-terminal domain IHE41_01070 PF00817 impB/mucB/samB family IHE41_01070 PF11798 IMS family HHH motif IHE41_01075 PF00270 DEAD/DEAH box helicase IHE41_01075 PF00271 Helicase conserved C-terminal domain IHE41_01075 PF00570 HRDC domain IHE41_01075 PF16124 RecQ zinc-binding IHE41_01075 PF09382 RQC domain IHE41_01080 PF01272 Transcription elongation factor, GreA/GreB, C-term IHE41_01080 PF03449 Transcription elongation factor, N-terminal IHE41_01095 PF00209 Sodium:neurotransmitter symporter family IHE41_01105 PF06786 Uncharacterised protein family (UPF0253) IHE41_01115 PF03129 Anticodon binding domain IHE41_01115 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IHE41_01115 PF04073 Aminoacyl-tRNA editing domain IHE41_01120 PF18389 TrmO C-terminal domain IHE41_01120 PF01980 tRNA-methyltransferase O IHE41_01125 PF01197 Ribosomal protein L31 IHE41_01130 PF00444 Ribosomal protein L36 IHE41_01135 PF03806 AbgT putative transporter family IHE41_01140 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 IHE41_01165 PF04287 tRNA pseudouridine synthase C IHE41_01170 PF00849 RNA pseudouridylate synthase IHE41_01175 PF11944 Protein of unknown function (DUF3461) IHE41_01180 PF01909 Nucleotidyltransferase domain IHE41_01180 PF01842 ACT domain IHE41_01180 PF08335 GlnD PII-uridylyltransferase IHE41_01180 PF01966 HD domain IHE41_01185 PF00557 Metallopeptidase family M24 IHE41_01190 PF00318 Ribosomal protein S2 IHE41_01195 PF00889 Elongation factor TS IHE41_01200 PF00696 Amino acid kinase family IHE41_01205 PF01765 Ribosome recycling factor IHE41_01210 PF01255 Putative undecaprenyl diphosphate synthase IHE41_01220 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain IHE41_01220 PF13288 DXP reductoisomerase C-terminal domain IHE41_01220 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase IHE41_01225 PF17820 PDZ domain IHE41_01225 PF02163 Peptidase family M50 IHE41_01230 PF01103 Surface antigen IHE41_01230 PF07244 Surface antigen variable number repeat IHE41_01235 PF03938 Outer membrane protein (OmpH-like) IHE41_01240 PF00132 Bacterial transferase hexapeptide (six repeats) IHE41_01240 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD IHE41_01245 PF07977 FabA-like domain IHE41_01250 PF00132 Bacterial transferase hexapeptide (six repeats) IHE41_01250 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 IHE41_01255 PF02684 Lipid-A-disaccharide synthetase IHE41_01260 PF01351 Ribonuclease HII IHE41_01265 PF07733 Bacterial DNA polymerase III alpha NTPase domain IHE41_01265 PF17657 Bacterial DNA polymerase III alpha subunit finger domain IHE41_01265 PF14579 Helix-hairpin-helix motif IHE41_01265 PF02811 PHP domain IHE41_01265 PF01336 OB-fold nucleic acid binding domain IHE41_01270 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit IHE41_01275 PF09179 TilS substrate binding domain IHE41_01275 PF11734 TilS substrate C-terminal domain IHE41_01275 PF01171 PP-loop family IHE41_01280 PF00034 Cytochrome c IHE41_01285 PF00543 Nitrogen regulatory protein P-II IHE41_01290 PF03372 Endonuclease/Exonuclease/phosphatase family IHE41_01300 PF01476 LysM domain IHE41_01300 PF01464 Transglycosylase SLT domain IHE41_01305 PF16123 Hydroxyacylglutathione hydrolase C-terminus IHE41_01305 PF00753 Metallo-beta-lactamase superfamily IHE41_01310 PF08241 Methyltransferase domain IHE41_01315 PF00075 RNase H IHE41_01320 PF00929 Exonuclease IHE41_01335 PF00583 Acetyltransferase (GNAT) family IHE41_01340 PF00916 Sulfate permease family IHE41_01340 PF01740 STAS domain IHE41_01345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IHE41_01345 PF02770 Acyl-CoA dehydrogenase, middle domain IHE41_01345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IHE41_01345 PF09317 Domain of unknown function (DUF1974) IHE41_01350 PF13580 SIS domain IHE41_01355 PF13230 Glutamine amidotransferases class-II IHE41_01360 PF00551 Formyl transferase IHE41_01365 PF00586 AIR synthase related protein, N-terminal domain IHE41_01365 PF02769 AIR synthase related protein, C-terminal domain IHE41_01375 PF00860 Permease family IHE41_01390 PF03358 NADPH-dependent FMN reductase IHE41_01395 PF03960 ArsC family IHE41_01400 PF13181 Tetratricopeptide repeat IHE41_01400 PF01435 Peptidase family M48 IHE41_01410 PF01594 AI-2E family transporter IHE41_01415 PF00578 AhpC/TSA family IHE41_01430 PF13426 PAS domain IHE41_01430 PF00563 EAL domain IHE41_01430 PF00990 Diguanylate cyclase, GGDEF domain IHE41_01540 PF00771 FHIPEP family IHE41_01545 PF01312 FlhB HrpN YscU SpaS Family IHE41_01575 PF00486 Transcriptional regulatory protein, C terminal IHE41_01590 PF00813 FliP family IHE41_01605 PF03958 Bacterial type II/III secretion system short domain IHE41_01605 PF00263 Bacterial type II and III secretion system protein IHE41_01610 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IHE41_01610 PF02874 ATP synthase alpha/beta family, beta-barrel domain IHE41_01610 PF18269 T3SS EscN ATPase C-terminal domain IHE41_01665 PF00892 EamA-like transporter family IHE41_01675 PF13402 Peptidase M60, enhancin and enhancin-like IHE41_01675 PF13322 Domain of unknown function (DUF4092) IHE41_01675 PF17291 N-terminal domain of M60-like peptidases IHE41_01680 PF00816 H-NS histone family IHE41_01690 PF03347 Vibrio thermostable direct hemolysin IHE41_01695 PF12833 Helix-turn-helix domain IHE41_01700 PF00005 ABC transporter IHE41_01705 PF00005 ABC transporter IHE41_01705 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IHE41_01710 PF12911 N-terminal TM domain of oligopeptide transport permease C IHE41_01710 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_01715 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_01720 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IHE41_01725 PF01774 UreD urease accessory protein IHE41_01730 PF00547 Urease, gamma subunit IHE41_01735 PF00699 Urease beta subunit IHE41_01740 PF00449 Urease alpha-subunit, N-terminal domain IHE41_01740 PF01979 Amidohydrolase family IHE41_01745 PF05194 UreE urease accessory protein, C-terminal domain IHE41_01745 PF02814 UreE urease accessory protein, N-terminal domain IHE41_01750 PF01730 UreF IHE41_01755 PF02492 CobW/HypB/UreG, nucleotide-binding domain IHE41_01810 PF00578 AhpC/TSA family IHE41_01840 PF01842 ACT domain IHE41_01845 PF00701 Dihydrodipicolinate synthetase family IHE41_01850 PF06804 NlpB/DapX lipoprotein IHE41_01865 PF07687 Peptidase dimerisation domain IHE41_01865 PF01546 Peptidase family M20/M25/M40 IHE41_01870 PF03960 ArsC family IHE41_01890 PF11143 Protein of unknown function (DUF2919) IHE41_01895 PF04261 Dyp-type peroxidase family IHE41_01900 PF07196 Flagellin hook IN motif IHE41_01900 PF00669 Bacterial flagellin N-terminal helical region IHE41_01900 PF00700 Bacterial flagellin C-terminal helical region IHE41_01905 PF00669 Bacterial flagellin N-terminal helical region IHE41_01905 PF00700 Bacterial flagellin C-terminal helical region IHE41_01905 PF07196 Flagellin hook IN motif IHE41_01910 PF07196 Flagellin hook IN motif IHE41_01910 PF00700 Bacterial flagellin C-terminal helical region IHE41_01910 PF00669 Bacterial flagellin N-terminal helical region IHE41_01915 PF03646 FlaG protein IHE41_01920 PF07196 Flagellin hook IN motif IHE41_01920 PF07195 Flagellar hook-associated protein 2 C-terminus IHE41_01920 PF02465 Flagellar hook-associated protein 2 N-terminus IHE41_01930 PF02561 Flagellar protein FliS IHE41_01935 PF00158 Sigma-54 interaction domain IHE41_01935 PF02954 Bacterial regulatory protein, Fis family IHE41_01935 PF06490 Flagellar regulatory protein FleQ IHE41_01940 PF13188 PAS domain IHE41_01940 PF00512 His Kinase A (phospho-acceptor) domain IHE41_01940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_01945 PF00158 Sigma-54 interaction domain IHE41_01945 PF00072 Response regulator receiver domain IHE41_01945 PF02954 Bacterial regulatory protein, Fis family IHE41_01950 PF02049 Flagellar hook-basal body complex protein FliE IHE41_01955 PF01514 Secretory protein of YscJ/FliF family IHE41_01955 PF08345 Flagellar M-ring protein C-terminal IHE41_01960 PF01706 FliG C-terminal domain IHE41_01960 PF14841 FliG middle domain IHE41_01960 PF14842 FliG N-terminal domain IHE41_01970 PF18269 T3SS EscN ATPase C-terminal domain IHE41_01970 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IHE41_01990 PF02154 Flagellar motor switch protein FliM IHE41_01990 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term IHE41_01995 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term IHE41_02000 PF04347 Flagellar biosynthesis protein, FliO IHE41_02005 PF00813 FliP family IHE41_02010 PF01313 Bacterial export proteins, family 3 IHE41_02015 PF01311 Bacterial export proteins, family 1 IHE41_02020 PF01312 FlhB HrpN YscU SpaS Family IHE41_02025 PF00771 FHIPEP family IHE41_02030 PF00448 SRP54-type protein, GTPase domain IHE41_02035 PF10609 NUBPL iron-transfer P-loop NTPase IHE41_02040 PF04542 Sigma-70 region 2 IHE41_02040 PF04539 Sigma-70 region 3 IHE41_02040 PF04545 Sigma-70, region 4 IHE41_02045 PF00072 Response regulator receiver domain IHE41_02050 PF04344 Chemotaxis phosphatase, CheZ IHE41_02055 PF01584 CheW-like domain IHE41_02055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_02055 PF01627 Hpt domain IHE41_02055 PF00072 Response regulator receiver domain IHE41_02055 PF02895 Signal transducing histidine kinase, homodimeric domain IHE41_02060 PF01339 CheB methylesterase IHE41_02060 PF00072 Response regulator receiver domain IHE41_02065 PF13614 AAA domain IHE41_02075 PF01584 CheW-like domain IHE41_02085 PF00005 ABC transporter IHE41_02090 PF03379 CcmB protein IHE41_02095 PF01578 Cytochrome C assembly protein IHE41_02100 PF04995 Heme exporter protein D (CcmD) IHE41_02105 PF03100 CcmE IHE41_02110 PF01578 Cytochrome C assembly protein IHE41_02110 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal IHE41_02115 PF08534 Redoxin IHE41_02120 PF03918 Cytochrome C biogenesis protein IHE41_02130 PF04333 MlaA lipoprotein IHE41_02135 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) IHE41_02140 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) IHE41_02150 PF04542 Sigma-70 region 2 IHE41_02150 PF08281 Sigma-70, region 4 IHE41_02155 PF02803 Thiolase, C-terminal domain IHE41_02155 PF00108 Thiolase, N-terminal domain IHE41_02160 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IHE41_02160 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IHE41_02160 PF00378 Enoyl-CoA hydratase/isomerase IHE41_02170 PF16187 Middle or third domain of peptidase_M16 IHE41_02170 PF00675 Insulinase (Peptidase family M16) IHE41_02170 PF05193 Peptidase M16 inactive domain IHE41_02175 PF00300 Histidine phosphatase superfamily (branch 1) IHE41_02180 PF01713 Smr domain IHE41_02185 PF05175 Methyltransferase small domain IHE41_02190 PF01264 Chorismate synthase IHE41_02195 PF03458 UPF0126 domain IHE41_02200 PF04315 Elongation factor P hydroxylase IHE41_02205 PF08891 YfcL protein IHE41_02210 PF03358 NADPH-dependent FMN reductase IHE41_02215 PF05430 S-adenosyl-L-methionine-dependent methyltransferase IHE41_02215 PF01266 FAD dependent oxidoreductase IHE41_02220 PF00109 Beta-ketoacyl synthase, N-terminal domain IHE41_02220 PF02801 Beta-ketoacyl synthase, C-terminal domain IHE41_02225 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IHE41_02225 PF11890 Domain of unknown function (DUF3410) IHE41_02225 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IHE41_02230 PF02774 Semialdehyde dehydrogenase, dimerisation domain IHE41_02230 PF01118 Semialdehyde dehydrogenase, NAD binding domain IHE41_02240 PF01416 tRNA pseudouridine synthase IHE41_02245 PF17848 Acetyl-coA carboxylase zinc finger domain IHE41_02245 PF01039 Carboxyl transferase domain IHE41_02250 PF02875 Mur ligase family, glutamate ligase domain IHE41_02250 PF08245 Mur ligase middle domain IHE41_02255 PF05036 Sporulation related domain IHE41_02260 PF02674 Colicin V production protein IHE41_02265 PF00156 Phosphoribosyl transferase domain IHE41_02270 PF03466 LysR substrate binding domain IHE41_02270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_02275 PF00072 Response regulator receiver domain IHE41_02280 PF04304 Protein of unknown function (DUF454) IHE41_02285 PF00156 Phosphoribosyl transferase domain IHE41_02290 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding IHE41_02290 PF12170 DNA polymerase III tau subunit V interacting with alpha IHE41_02290 PF12169 DNA polymerase III subunits gamma and tau domain III IHE41_02295 PF02575 YbaB/EbfC DNA-binding family IHE41_02300 PF02132 RecR protein IHE41_02300 PF13662 Toprim domain IHE41_02305 PF00230 Major intrinsic protein IHE41_02315 PF01042 Endoribonuclease L-PSP IHE41_02320 PF03313 Serine dehydratase alpha chain IHE41_02330 PF03692 Putative zinc- or iron-chelating domain IHE41_02335 PF04226 Transglycosylase associated protein IHE41_02340 PF03692 Putative zinc- or iron-chelating domain IHE41_02345 PF00924 Mechanosensitive ion channel IHE41_02345 PF05552 Conserved TM helix IHE41_02350 PF03992 Antibiotic biosynthesis monooxygenase IHE41_02355 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IHE41_02365 PF00245 Alkaline phosphatase IHE41_02380 PF13847 Methyltransferase domain IHE41_02385 PF00672 HAMP domain IHE41_02385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IHE41_02385 PF02743 Cache domain IHE41_02390 PF01263 Aldose 1-epimerase IHE41_02395 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IHE41_02395 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IHE41_02400 PF01641 SelR domain IHE41_02410 PF07023 Protein of unknown function (DUF1315) IHE41_02415 PF00710 Asparaginase, N-terminal IHE41_02415 PF17763 Glutaminase/Asparaginase C-terminal domain IHE41_02420 PF01343 Peptidase family S49 IHE41_02425 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IHE41_02425 PF07992 Pyridine nucleotide-disulphide oxidoreductase IHE41_02430 PF00881 Nitroreductase family IHE41_02435 PF01131 DNA topoisomerase IHE41_02435 PF01751 Toprim domain IHE41_02445 PF00106 short chain dehydrogenase IHE41_02450 PF00850 Histone deacetylase domain IHE41_02460 PF11893 Domain of unknown function (DUF3413) IHE41_02460 PF00884 Sulfatase IHE41_02465 PF07208 Protein of unknown function (DUF1414) IHE41_02470 PF04245 37-kD nucleoid-associated bacterial protein IHE41_02485 PF03553 Na+/H+ antiporter family IHE41_02490 PF01118 Semialdehyde dehydrogenase, NAD binding domain IHE41_02490 PF02774 Semialdehyde dehydrogenase, dimerisation domain IHE41_02495 PF00027 Cyclic nucleotide-binding domain IHE41_02495 PF00520 Ion transport protein IHE41_02500 PF01914 MarC family integral membrane protein IHE41_02505 PF00171 Aldehyde dehydrogenase family IHE41_02505 PF00465 Iron-containing alcohol dehydrogenase IHE41_02520 PF02777 Iron/manganese superoxide dismutases, C-terminal domain IHE41_02520 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain IHE41_02525 PF00462 Glutaredoxin IHE41_02535 PF13726 Na+-H+ antiporter family IHE41_02535 PF03553 Na+/H+ antiporter family IHE41_02540 PF00929 Exonuclease IHE41_02545 PF18393 MotY N-terminal domain IHE41_02545 PF00691 OmpA family IHE41_02550 PF10952 Protein of unknown function (DUF2753) IHE41_02555 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IHE41_02560 PF10576 Iron-sulfur binding domain of endonuclease III IHE41_02560 PF00633 Helix-hairpin-helix motif IHE41_02560 PF00730 HhH-GPD superfamily base excision DNA repair protein IHE41_02565 PF02508 Rnf-Nqr subunit, membrane protein IHE41_02570 PF04205 FMN-binding domain IHE41_02575 PF03116 NQR2, RnfD, RnfE family IHE41_02580 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit IHE41_02580 PF12838 4Fe-4S dicluster domain IHE41_02580 PF13375 RnfC Barrel sandwich hybrid domain IHE41_02580 PF10531 SLBB domain IHE41_02585 PF04060 Putative Fe-S cluster IHE41_02590 PF02508 Rnf-Nqr subunit, membrane protein IHE41_02600 PF04851 Type III restriction enzyme, res subunit IHE41_02600 PF02151 UvrB/uvrC motif IHE41_02600 PF00271 Helicase conserved C-terminal domain IHE41_02600 PF12344 Ultra-violet resistance protein B IHE41_02600 PF17757 UvrB interaction domain IHE41_02605 PF00072 Response regulator receiver domain IHE41_02605 PF02954 Bacterial regulatory protein, Fis family IHE41_02605 PF00158 Sigma-54 interaction domain IHE41_02610 PF01627 Hpt domain IHE41_02615 PF01933 Uncharacterised protein family UPF0052 IHE41_02620 PF06463 Molybdenum Cofactor Synthesis C IHE41_02620 PF04055 Radical SAM superfamily IHE41_02625 PF00994 Probable molybdopterin binding domain IHE41_02630 PF01967 MoaC family IHE41_02635 PF02597 ThiS family IHE41_02640 PF02391 MoaE protein IHE41_02645 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IHE41_02650 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_02655 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_02655 PF12911 N-terminal TM domain of oligopeptide transport permease C IHE41_02660 PF00005 ABC transporter IHE41_02660 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IHE41_02665 PF00005 ABC transporter IHE41_02665 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IHE41_02670 PF13409 Glutathione S-transferase, N-terminal domain IHE41_02680 PF13194 Domain of unknown function (DUF4010) IHE41_02685 PF07085 DRTGG domain IHE41_02685 PF01515 Phosphate acetyl/butaryl transferase IHE41_02690 PF00871 Acetokinase family IHE41_02695 PF04217 Protein of unknown function, DUF412 IHE41_02705 PF02653 Branched-chain amino acid transport system / permease component IHE41_02710 PF00005 ABC transporter IHE41_02720 PF00990 Diguanylate cyclase, GGDEF domain IHE41_02720 PF00072 Response regulator receiver domain IHE41_02725 PF01207 Dihydrouridine synthase (Dus) IHE41_02730 PF02810 SEC-C motif IHE41_02730 PF07517 SecA DEAD-like domain IHE41_02730 PF07516 SecA Wing and Scaffold domain IHE41_02730 PF01043 SecA preprotein cross-linking domain IHE41_02735 PF02600 Disulfide bond formation protein DsbB IHE41_02740 PF06450 Bacterial Na+/H+ antiporter B (NhaB) IHE41_02745 PF07840 FadR C-terminal domain IHE41_02745 PF00392 Bacterial regulatory proteins, gntR family IHE41_02755 PF09334 tRNA synthetases class I (M) IHE41_02755 PF01588 Putative tRNA binding domain IHE41_02760 PF10609 NUBPL iron-transfer P-loop NTPase IHE41_02765 PF00485 Phosphoribulokinase / Uridine kinase family IHE41_02775 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP IHE41_02775 PF12557 Cob(I)alamin adenosyltransferase N terminal IHE41_02780 PF01451 Low molecular weight phosphotyrosine protein phosphatase IHE41_02785 PF01740 STAS domain IHE41_02785 PF00916 Sulfate permease family IHE41_02790 PF12111 Polyribonucleotide phosphorylase C terminal IHE41_02790 PF10150 Ribonuclease E/G family IHE41_02790 PF00575 S1 RNA binding domain IHE41_02795 PF00849 RNA pseudouridylate synthase IHE41_02795 PF01479 S4 domain IHE41_02800 PF02545 Maf-like protein IHE41_02805 PF02620 Large ribosomal RNA subunit accumulation protein YceD IHE41_02810 PF01783 Ribosomal L32p protein family IHE41_02815 PF02504 Fatty acid synthesis protein IHE41_02820 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IHE41_02820 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IHE41_02825 PF00698 Acyl transferase domain IHE41_02835 PF00550 Phosphopantetheine attachment site IHE41_02840 PF00109 Beta-ketoacyl synthase, N-terminal domain IHE41_02840 PF02801 Beta-ketoacyl synthase, C-terminal domain IHE41_02845 PF01063 Amino-transferase class IV IHE41_02850 PF02618 YceG-like family IHE41_02855 PF02223 Thymidylate kinase IHE41_02860 PF09115 DNA polymerase III, delta subunit, C terminal IHE41_02865 PF01026 TatD related DNase IHE41_02870 PF02378 Phosphotransferase system, EIIC IHE41_02870 PF00367 phosphotransferase system, EIIB IHE41_02885 PF00209 Sodium:neurotransmitter symporter family IHE41_02900 PF01734 Patatin-like phospholipase IHE41_02905 PF00224 Pyruvate kinase, barrel domain IHE41_02905 PF02887 Pyruvate kinase, alpha/beta domain IHE41_02910 PF00480 ROK family IHE41_02915 PF01584 CheW-like domain IHE41_02915 PF00072 Response regulator receiver domain IHE41_02920 PF07733 Bacterial DNA polymerase III alpha NTPase domain IHE41_02920 PF01336 OB-fold nucleic acid binding domain IHE41_02920 PF02811 PHP domain IHE41_02920 PF17657 Bacterial DNA polymerase III alpha subunit finger domain IHE41_02920 PF14579 Helix-hairpin-helix motif IHE41_02935 PF00106 short chain dehydrogenase IHE41_02940 PF01343 Peptidase family S49 IHE41_02940 PF08496 Peptidase family S49 N-terminal IHE41_02945 PF02224 Cytidylate kinase IHE41_02950 PF00575 S1 RNA binding domain IHE41_02955 PF00216 Bacterial DNA-binding protein IHE41_02960 PF06305 Lipopolysaccharide assembly protein A domain IHE41_02965 PF18073 Rubredoxin metal binding domain IHE41_02970 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family IHE41_02975 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IHE41_02985 PF01370 NAD dependent epimerase/dehydratase family IHE41_02990 PF00535 Glycosyl transferase family 2 IHE41_03000 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase IHE41_03010 PF02470 MlaD protein IHE41_03015 PF04403 Paraquat-inducible protein A IHE41_03020 PF13442 Cytochrome C oxidase, cbb3-type, subunit III IHE41_03025 PF00034 Cytochrome c IHE41_03030 PF01568 Molydopterin dinucleotide binding domain IHE41_03030 PF00384 Molybdopterin oxidoreductase IHE41_03030 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IHE41_03035 PF03916 Polysulphide reductase, NrfD IHE41_03040 PF13247 4Fe-4S dicluster domain IHE41_03045 PF00512 His Kinase A (phospho-acceptor) domain IHE41_03045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_03050 PF00072 Response regulator receiver domain IHE41_03050 PF00196 Bacterial regulatory proteins, luxR family IHE41_03055 PF03466 LysR substrate binding domain IHE41_03055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_03065 PF11412 Disulphide bond corrector protein DsbC IHE41_03065 PF02683 Cytochrome C biogenesis protein transmembrane region IHE41_03070 PF00085 Thioredoxin IHE41_03085 PF05958 tRNA (Uracil-5-)-methyltransferase IHE41_03085 PF01938 TRAM domain IHE41_03100 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IHE41_03110 PF00005 ABC transporter IHE41_03110 PF02687 FtsX-like permease family IHE41_03110 PF12704 MacB-like periplasmic core domain IHE41_03115 PF12704 MacB-like periplasmic core domain IHE41_03115 PF00005 ABC transporter IHE41_03115 PF02687 FtsX-like permease family IHE41_03120 PF02687 FtsX-like permease family IHE41_03120 PF00005 ABC transporter IHE41_03120 PF12704 MacB-like periplasmic core domain IHE41_03140 PF03793 PASTA domain IHE41_03140 PF00069 Protein kinase domain IHE41_03150 PF01810 LysE type translocator IHE41_03165 PF08267 Cobalamin-independent synthase, N-terminal domain IHE41_03165 PF01717 Cobalamin-independent synthase, Catalytic domain IHE41_03175 PF00529 HlyD membrane-fusion protein of T1SS IHE41_03175 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IHE41_03180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_03180 PF03466 LysR substrate binding domain IHE41_03200 PF00512 His Kinase A (phospho-acceptor) domain IHE41_03200 PF00672 HAMP domain IHE41_03200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_03205 PF00072 Response regulator receiver domain IHE41_03205 PF00486 Transcriptional regulatory protein, C terminal IHE41_03210 PF00672 HAMP domain IHE41_03210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IHE41_03215 PF11842 Domain of unknown function (DUF3362) IHE41_03215 PF04055 Radical SAM superfamily IHE41_03215 PF08497 Radical SAM N-terminal IHE41_03220 PF01590 GAF domain IHE41_03220 PF00360 Phytochrome region IHE41_03220 PF00990 Diguanylate cyclase, GGDEF domain IHE41_03220 PF00563 EAL domain IHE41_03235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_03235 PF03466 LysR substrate binding domain IHE41_03240 PF01717 Cobalamin-independent synthase, Catalytic domain IHE41_03240 PF08267 Cobalamin-independent synthase, N-terminal domain IHE41_03250 PF03795 YCII-related domain IHE41_03255 PF03061 Thioesterase superfamily IHE41_03260 PF04279 Intracellular septation protein A IHE41_03270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_03270 PF00072 Response regulator receiver domain IHE41_03275 PF17327 Acyl homoserine lactone synthase IHE41_03280 PF00375 Sodium:dicarboxylate symporter family IHE41_03285 PF13193 AMP-binding enzyme C-terminal domain IHE41_03285 PF00501 AMP-binding enzyme IHE41_03290 PF00027 Cyclic nucleotide-binding domain IHE41_03290 PF13545 Crp-like helix-turn-helix domain IHE41_03295 PF00290 Tryptophan synthase alpha chain IHE41_03300 PF00291 Pyridoxal-phosphate dependent enzyme IHE41_03305 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase IHE41_03305 PF00218 Indole-3-glycerol phosphate synthase IHE41_03310 PF00591 Glycosyl transferase family, a/b domain IHE41_03310 PF02885 Glycosyl transferase family, helical bundle domain IHE41_03315 PF00117 Glutamine amidotransferase class-I IHE41_03320 PF00425 chorismate binding enzyme IHE41_03320 PF04715 Anthranilate synthase component I, N terminal region IHE41_03325 PF08056 Tryptophan operon leader peptide IHE41_03330 PF02811 PHP domain IHE41_03335 PF01300 Telomere recombination IHE41_03345 PF01479 S4 domain IHE41_03345 PF00849 RNA pseudouridylate synthase IHE41_03350 PF04269 Protein of unknown function, DUF440 IHE41_03355 PF01132 Elongation factor P (EF-P) OB domain IHE41_03355 PF08207 Elongation factor P (EF-P) KOW-like domain IHE41_03355 PF09285 Elongation factor P, C-terminal IHE41_03365 PF00136 DNA polymerase family B IHE41_03365 PF03104 DNA polymerase family B, exonuclease domain IHE41_03370 PF00196 Bacterial regulatory proteins, luxR family IHE41_03370 PF00072 Response regulator receiver domain IHE41_03375 PF02151 UvrB/uvrC motif IHE41_03375 PF08459 UvrC Helix-hairpin-helix N-terminal IHE41_03375 PF01541 GIY-YIG catalytic domain IHE41_03380 PF01066 CDP-alcohol phosphatidyltransferase IHE41_03405 PF00202 Aminotransferase class-III IHE41_03410 PF16653 Saccharopine dehydrogenase C-terminal domain IHE41_03410 PF03435 Saccharopine dehydrogenase NADP binding domain IHE41_03415 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain IHE41_03430 PF00994 Probable molybdopterin binding domain IHE41_03440 PF00268 Ribonucleotide reductase, small chain IHE41_03445 PF00317 Ribonucleotide reductase, all-alpha domain IHE41_03445 PF02867 Ribonucleotide reductase, barrel domain IHE41_03445 PF03477 ATP cone domain IHE41_03455 PF03989 DNA gyrase C-terminal domain, beta-propeller IHE41_03455 PF00521 DNA gyrase/topoisomerase IV, subunit A IHE41_03470 PF02335 Cytochrome c552 IHE41_03480 PF13247 4Fe-4S dicluster domain IHE41_03485 PF03916 Polysulphide reductase, NrfD IHE41_03490 PF01578 Cytochrome C assembly protein IHE41_03490 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal IHE41_03495 PF08534 Redoxin IHE41_03500 PF03918 Cytochrome C biogenesis protein IHE41_03510 PF00925 GTP cyclohydrolase II IHE41_03535 PF03734 L,D-transpeptidase catalytic domain IHE41_03535 PF01471 Putative peptidoglycan binding domain IHE41_03540 PF05951 Bacterial protein of unknown function (DUF882) IHE41_03545 PF00753 Metallo-beta-lactamase superfamily IHE41_03560 PF03480 Bacterial extracellular solute-binding protein, family 7 IHE41_03570 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component IHE41_03575 PF17200 Single Cache domain 2 IHE41_03575 PF07730 Histidine kinase IHE41_03580 PF00072 Response regulator receiver domain IHE41_03580 PF00196 Bacterial regulatory proteins, luxR family IHE41_03585 PF01047 MarR family IHE41_03590 PF02028 BCCT, betaine/carnitine/choline family transporter IHE41_03595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IHE41_03595 PF00672 HAMP domain IHE41_03615 PF00155 Aminotransferase class I and II IHE41_03630 PF00155 Aminotransferase class I and II IHE41_03630 PF00392 Bacterial regulatory proteins, gntR family IHE41_03640 PF00152 tRNA synthetases class II (D, K and N) IHE41_03640 PF01336 OB-fold nucleic acid binding domain IHE41_03645 PF12729 Four helix bundle sensory module for signal transduction IHE41_03645 PF00672 HAMP domain IHE41_03645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IHE41_03650 PF01242 6-pyruvoyl tetrahydropterin synthase IHE41_03660 PF00563 EAL domain IHE41_03660 PF04940 Sensors of blue-light using FAD IHE41_03665 PF03313 Serine dehydratase alpha chain IHE41_03665 PF03315 Serine dehydratase beta chain IHE41_03670 PF03222 Tryptophan/tyrosine permease family IHE41_03675 PF00293 NUDIX domain IHE41_03685 PF00512 His Kinase A (phospho-acceptor) domain IHE41_03685 PF00072 Response regulator receiver domain IHE41_03685 PF09308 LuxQ, periplasmic IHE41_03685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_03690 PF04715 Anthranilate synthase component I, N terminal region IHE41_03690 PF00425 chorismate binding enzyme IHE41_03705 PF04317 YcjX-like family, DUF463 IHE41_03710 PF05128 Domain of unknown function (DUF697) IHE41_03715 PF00158 Sigma-54 interaction domain IHE41_03715 PF18024 Helix-turn-helix domain IHE41_03720 PF13302 Acetyltransferase (GNAT) domain IHE41_03735 PF13495 Phage integrase, N-terminal SAM-like domain IHE41_03735 PF00589 Phage integrase family IHE41_03825 PF13276 HTH-like domain IHE41_03825 PF00665 Integrase core domain IHE41_03825 PF13333 Integrase core domain IHE41_03870 PF13276 HTH-like domain IHE41_03870 PF00665 Integrase core domain IHE41_03870 PF13333 Integrase core domain IHE41_03905 PF00583 Acetyltransferase (GNAT) family IHE41_03990 PF13614 AAA domain IHE41_04065 PF13276 HTH-like domain IHE41_04065 PF00665 Integrase core domain IHE41_04065 PF13333 Integrase core domain IHE41_04125 PF13333 Integrase core domain IHE41_04125 PF00665 Integrase core domain IHE41_04125 PF13276 HTH-like domain IHE41_04165 PF03553 Na+/H+ antiporter family IHE41_04170 PF00120 Glutamine synthetase, catalytic domain IHE41_04175 PF07722 Peptidase C26 IHE41_04180 PF01381 Helix-turn-helix IHE41_04180 PF07883 Cupin domain IHE41_04185 PF00171 Aldehyde dehydrogenase family IHE41_04190 PF01266 FAD dependent oxidoreductase IHE41_04195 PF00795 Carbon-nitrogen hydrolase IHE41_04200 PF04371 Porphyromonas-type peptidyl-arginine deiminase IHE41_04205 PF00171 Aldehyde dehydrogenase family IHE41_04210 PF00202 Aminotransferase class-III IHE41_04215 PF01368 DHH family IHE41_04215 PF02833 DHHA2 domain IHE41_04220 PF00563 EAL domain IHE41_04220 PF00196 Bacterial regulatory proteins, luxR family IHE41_04230 PF02272 DHHA1 domain IHE41_04230 PF01411 tRNA synthetases class II (A) IHE41_04230 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IHE41_04235 PF12833 Helix-turn-helix domain IHE41_04245 PF01047 MarR family IHE41_04250 PF04237 YjbR IHE41_04260 PF01928 CYTH domain IHE41_04270 PF12464 Maltose acetyltransferase IHE41_04270 PF00132 Bacterial transferase hexapeptide (six repeats) IHE41_04285 PF00672 HAMP domain IHE41_04285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_04285 PF00512 His Kinase A (phospho-acceptor) domain IHE41_04285 PF01627 Hpt domain IHE41_04285 PF00072 Response regulator receiver domain IHE41_04285 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IHE41_04290 PF00563 EAL domain IHE41_04290 PF03707 Bacterial signalling protein N terminal repeat IHE41_04290 PF00990 Diguanylate cyclase, GGDEF domain IHE41_04305 PF04204 Homoserine O-succinyltransferase IHE41_04315 PF13520 Amino acid permease IHE41_04320 PF03279 Bacterial lipid A biosynthesis acyltransferase IHE41_04325 PF02074 Carboxypeptidase Taq (M32) metallopeptidase IHE41_04330 PF01810 LysE type translocator IHE41_04340 PF01235 Sodium:alanine symporter family IHE41_04365 PF00884 Sulfatase IHE41_04370 PF08521 Two-component sensor kinase N-terminal IHE41_04370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_04370 PF00512 His Kinase A (phospho-acceptor) domain IHE41_04375 PF00072 Response regulator receiver domain IHE41_04375 PF00486 Transcriptional regulatory protein, C terminal IHE41_04395 PF00501 AMP-binding enzyme IHE41_04405 PF04069 Substrate binding domain of ABC-type glycine betaine transport system IHE41_04410 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_04415 PF00005 ABC transporter IHE41_04415 PF00571 CBS domain IHE41_04430 PF02028 BCCT, betaine/carnitine/choline family transporter IHE41_04435 PF00583 Acetyltransferase (GNAT) family IHE41_04440 PF00202 Aminotransferase class-III IHE41_04445 PF06339 Ectoine synthase IHE41_04450 PF00696 Amino acid kinase family IHE41_04450 PF13840 ACT domain IHE41_04455 PF00034 Cytochrome c IHE41_04455 PF03150 Di-haem cytochrome c peroxidase IHE41_04470 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IHE41_04485 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain IHE41_04485 PF17203 Single cache domain 3 IHE41_04485 PF00989 PAS fold IHE41_04485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_04490 PF00072 Response regulator receiver domain IHE41_04490 PF12431 Transcriptional regulator IHE41_04495 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain IHE41_04495 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain IHE41_04500 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase IHE41_04505 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IHE41_04505 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain IHE41_04520 PF01590 GAF domain IHE41_04520 PF02954 Bacterial regulatory protein, Fis family IHE41_04520 PF00158 Sigma-54 interaction domain IHE41_04525 PF00171 Aldehyde dehydrogenase family IHE41_04545 PF12833 Helix-turn-helix domain IHE41_04560 PF03958 Bacterial type II/III secretion system short domain IHE41_04560 PF00263 Bacterial type II and III secretion system protein IHE41_04565 PF16693 Inner membrane component of T3SS, periplasmic domain IHE41_04565 PF16697 Inner membrane component of T3SS, cytoplasmic domain IHE41_04575 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF IHE41_04580 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) IHE41_04590 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI IHE41_04595 PF01514 Secretory protein of YscJ/FliF family IHE41_04605 PF02108 Flagellar assembly protein FliH IHE41_04615 PF02661 Fic/DOC family IHE41_04650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_04650 PF03466 LysR substrate binding domain IHE41_04660 PF12146 Serine aminopeptidase, S33 IHE41_04665 PF12146 Serine aminopeptidase, S33 IHE41_04670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_04670 PF03466 LysR substrate binding domain IHE41_04675 PF01312 FlhB HrpN YscU SpaS Family IHE41_04680 PF01311 Bacterial export proteins, family 1 IHE41_04685 PF01313 Bacterial export proteins, family 3 IHE41_04690 PF00813 FliP family IHE41_04695 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term IHE41_04710 PF18269 T3SS EscN ATPase C-terminal domain IHE41_04710 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IHE41_04710 PF02874 ATP synthase alpha/beta family, beta-barrel domain IHE41_04715 PF07201 HrpJ-like domain IHE41_04720 PF09059 TyeA IHE41_04740 PF00771 FHIPEP family IHE41_04745 PF09621 Type III secretion system regulator (LcrR) IHE41_04750 PF07216 LcrG protein IHE41_04755 PF04792 V antigen (LcrV) protein IHE41_04760 PF07720 Tetratricopeptide repeat IHE41_04770 PF05844 YopD protein IHE41_04780 PF01925 Sulfite exporter TauE/SafE IHE41_04785 PF01970 Tripartite tricarboxylate transporter TctA family IHE41_04815 PF00285 Citrate synthase, C-terminal domain IHE41_04820 PF00694 Aconitase C-terminal domain IHE41_04820 PF00330 Aconitase family (aconitate hydratase) IHE41_04825 PF04303 PrpF protein IHE41_04830 PF16177 Acetyl-coenzyme A synthetase N-terminus IHE41_04830 PF00501 AMP-binding enzyme IHE41_04830 PF13193 AMP-binding enzyme C-terminal domain IHE41_04840 PF00089 Trypsin IHE41_04855 PF04055 Radical SAM superfamily IHE41_04860 PF06508 Queuosine biosynthesis protein QueC IHE41_04865 PF17158 Membrane-associated sensor, integral membrane domain IHE41_04865 PF00990 Diguanylate cyclase, GGDEF domain IHE41_04875 PF00691 OmpA family IHE41_04875 PF05736 OprF membrane domain IHE41_04890 PF00691 OmpA family IHE41_04890 PF05736 OprF membrane domain IHE41_04910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IHE41_04910 PF00672 HAMP domain IHE41_04910 PF02743 Cache domain IHE41_04915 PF00708 Acylphosphatase IHE41_04920 PF04358 DsrC like protein IHE41_04930 PF01027 Inhibitor of apoptosis-promoting Bax1 IHE41_04935 PF00005 ABC transporter IHE41_04940 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_04945 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_04950 PF00497 Bacterial extracellular solute-binding proteins, family 3 IHE41_04955 PF14824 Sirohaem biosynthesis protein central IHE41_04955 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IHE41_04955 PF10414 Sirohaem synthase dimerisation region IHE41_04960 PF04461 Protein of unknown function (DUF520) IHE41_04965 PF00793 DAHP synthetase I family IHE41_04985 PF01189 16S rRNA methyltransferase RsmB/F IHE41_04985 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF IHE41_04985 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF IHE41_04990 PF02470 MlaD protein IHE41_04995 PF04403 Paraquat-inducible protein A IHE41_05000 PF00664 ABC transporter transmembrane region IHE41_05000 PF00005 ABC transporter IHE41_05005 PF13185 GAF domain IHE41_05010 PF17516 ProQ C-terminal domain IHE41_05010 PF04352 ProQ/FINO family IHE41_05015 PF11818 C-terminal domain of tail specific protease (DUF3340) IHE41_05015 PF03572 Peptidase family S41 IHE41_05015 PF17804 Tail specific protease N-terminal domain IHE41_05015 PF00595 PDZ domain IHE41_05025 PF11940 Domain of unknown function (DUF3458) Ig-like fold IHE41_05025 PF17432 Domain of unknown function (DUF3458_C) ARM repeats IHE41_05025 PF01433 Peptidase family M1 domain IHE41_05035 PF05088 Bacterial NAD-glutamate dehydrogenase IHE41_05040 PF01180 Dihydroorotate dehydrogenase IHE41_05045 PF07126 Cell-division protein ZapC IHE41_05050 PF10672 S-adenosylmethionine-dependent methyltransferase IHE41_05050 PF02926 THUMP domain IHE41_05050 PF01170 Putative RNA methylase family UPF0020 IHE41_05060 PF12848 ABC transporter IHE41_05060 PF00005 ABC transporter IHE41_05060 PF16326 ABC transporter C-terminal domain IHE41_05070 PF04957 Ribosome modulation factor IHE41_05075 PF07977 FabA-like domain IHE41_05080 PF13654 AAA domain IHE41_05080 PF05362 Lon protease (S16) C-terminal proteolytic domain IHE41_05085 PF06303 MatP N-terminal domain IHE41_05085 PF17414 MatP C-terminal ribbon-helix-helix domain IHE41_05150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_05150 PF00512 His Kinase A (phospho-acceptor) domain IHE41_05150 PF09308 LuxQ, periplasmic IHE41_05150 PF00072 Response regulator receiver domain IHE41_05165 PF00115 Cytochrome C and Quinol oxidase polypeptide I IHE41_05180 PF13442 Cytochrome C oxidase, cbb3-type, subunit III IHE41_05180 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP IHE41_05190 PF00403 Heavy-metal-associated domain IHE41_05205 PF00027 Cyclic nucleotide-binding domain IHE41_05205 PF13545 Crp-like helix-turn-helix domain IHE41_05210 PF00582 Universal stress protein family IHE41_05215 PF01171 PP-loop family IHE41_05235 PF00005 ABC transporter IHE41_05235 PF08402 TOBE domain IHE41_05240 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_05245 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_05250 PF13416 Bacterial extracellular solute-binding protein IHE41_05255 PF13416 Bacterial extracellular solute-binding protein IHE41_05260 PF02146 Sir2 family IHE41_05270 PF00909 Ammonium Transporter Family IHE41_05280 PF05593 RHS Repeat IHE41_05280 PF03527 RHS protein IHE41_05295 PF13247 4Fe-4S dicluster domain IHE41_05300 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IHE41_05300 PF00384 Molybdopterin oxidoreductase IHE41_05300 PF01568 Molydopterin dinucleotide binding domain IHE41_05310 PF02613 Nitrate reductase delta subunit IHE41_05330 PF02634 FdhD/NarQ family IHE41_05335 PF00005 ABC transporter IHE41_05335 PF12848 ABC transporter IHE41_05340 PF00512 His Kinase A (phospho-acceptor) domain IHE41_05340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_05345 PF00072 Response regulator receiver domain IHE41_05345 PF00158 Sigma-54 interaction domain IHE41_05345 PF02954 Bacterial regulatory protein, Fis family IHE41_05350 PF12849 PBP superfamily domain IHE41_05355 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_05360 PF00005 ABC transporter IHE41_05360 PF08402 TOBE domain IHE41_05365 PF12804 MobA-like NTP transferase domain IHE41_05370 PF00994 Probable molybdopterin binding domain IHE41_05370 PF03454 MoeA C-terminal region (domain IV) IHE41_05370 PF03453 MoeA N-terminal region (domain I and II) IHE41_05380 PF00480 ROK family IHE41_05385 PF03942 DTW domain IHE41_05415 PF00672 HAMP domain IHE41_05415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IHE41_05415 PF17202 Single cache domain 3 IHE41_05420 PF00877 NlpC/P60 family IHE41_05430 PF05230 MASE2 domain IHE41_05430 PF00990 Diguanylate cyclase, GGDEF domain IHE41_05435 PF00072 Response regulator receiver domain IHE41_05435 PF01339 CheB methylesterase IHE41_05440 PF03881 Fructosamine kinase IHE41_05450 PF00677 Lumazine binding domain IHE41_05455 PF01554 MatE IHE41_05465 PF01068 ATP dependent DNA ligase domain IHE41_05465 PF14743 DNA ligase OB-like domain IHE41_05470 PF01740 STAS domain IHE41_05480 PF10531 SLBB domain IHE41_05480 PF02563 Polysaccharide biosynthesis/export protein IHE41_05495 PF02954 Bacterial regulatory protein, Fis family IHE41_05495 PF00072 Response regulator receiver domain IHE41_05495 PF00158 Sigma-54 interaction domain IHE41_05500 PF00534 Glycosyl transferases group 1 IHE41_05500 PF13439 Glycosyltransferase Family 4 IHE41_05505 PF00534 Glycosyl transferases group 1 IHE41_05505 PF13439 Glycosyltransferase Family 4 IHE41_05535 PF13439 Glycosyltransferase Family 4 IHE41_05535 PF00534 Glycosyl transferases group 1 IHE41_05540 PF00535 Glycosyl transferase family 2 IHE41_05545 PF02397 Bacterial sugar transferase IHE41_05555 PF02028 BCCT, betaine/carnitine/choline family transporter IHE41_05570 PF00270 DEAD/DEAH box helicase IHE41_05570 PF04408 Helicase associated domain (HA2) IHE41_05570 PF11898 Domain of unknown function (DUF3418) IHE41_05570 PF00271 Helicase conserved C-terminal domain IHE41_05570 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold IHE41_05575 PF02525 Flavodoxin-like fold IHE41_05585 PF02613 Nitrate reductase delta subunit IHE41_05590 PF04976 DMSO reductase anchor subunit (DmsC) IHE41_05595 PF13247 4Fe-4S dicluster domain IHE41_05595 PF12800 4Fe-4S binding domain IHE41_05600 PF00384 Molybdopterin oxidoreductase IHE41_05600 PF01568 Molydopterin dinucleotide binding domain IHE41_05600 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IHE41_05630 PF00990 Diguanylate cyclase, GGDEF domain IHE41_05630 PF17151 Periplasmic sensor domain IHE41_05640 PF00012 Hsp70 protein IHE41_05645 PF00012 Hsp70 protein IHE41_05670 PF00664 ABC transporter transmembrane region IHE41_05670 PF00005 ABC transporter IHE41_05675 PF00005 ABC transporter IHE41_05675 PF00664 ABC transporter transmembrane region IHE41_05695 PF03222 Tryptophan/tyrosine permease family IHE41_05700 PF00465 Iron-containing alcohol dehydrogenase IHE41_05705 PF01966 HD domain IHE41_05755 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE IHE41_05785 PF01037 Lrp/AsnC ligand binding domain IHE41_05795 PF05947 Type VI secretion system, TssF IHE41_05805 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath IHE41_05820 PF00069 Protein kinase domain IHE41_05845 PF04717 Type VI secretion system, phage-baseplate injector IHE41_05850 PF05638 Type VI secretion system effector, Hcp IHE41_05855 PF00004 ATPase family associated with various cellular activities (AAA) IHE41_05855 PF07724 AAA domain (Cdc48 subfamily) IHE41_05855 PF17871 AAA lid domain IHE41_05855 PF10431 C-terminal, D2-small domain, of ClpB protein IHE41_05860 PF02954 Bacterial regulatory protein, Fis family IHE41_05860 PF00072 Response regulator receiver domain IHE41_05860 PF00158 Sigma-54 interaction domain IHE41_05885 PF01476 LysM domain IHE41_05885 PF08525 Opacity-associated protein A N-terminal motif IHE41_05885 PF01551 Peptidase family M23 IHE41_05890 PF03741 Integral membrane protein TerC family IHE41_05900 PF04055 Radical SAM superfamily IHE41_05905 PF11230 Protein of unknown function (DUF3029) IHE41_05910 PF01810 LysE type translocator IHE41_05915 PF11871 Domain of unknown function (DUF3391) IHE41_05915 PF01966 HD domain IHE41_05920 PF00990 Diguanylate cyclase, GGDEF domain IHE41_05920 PF03707 Bacterial signalling protein N terminal repeat IHE41_05920 PF00563 EAL domain IHE41_05925 PF00072 Response regulator receiver domain IHE41_05925 PF00158 Sigma-54 interaction domain IHE41_05925 PF02954 Bacterial regulatory protein, Fis family IHE41_05930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_05930 PF00512 His Kinase A (phospho-acceptor) domain IHE41_05930 PF00497 Bacterial extracellular solute-binding proteins, family 3 IHE41_05935 PF00939 Sodium:sulfate symporter transmembrane region IHE41_05950 PF00300 Histidine phosphatase superfamily (branch 1) IHE41_05970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_05970 PF03466 LysR substrate binding domain IHE41_05975 PF08543 Phosphomethylpyrimidine kinase IHE41_05990 PF13533 Biotin-lipoyl like IHE41_06045 PF02481 DNA recombination-mediator protein A IHE41_06045 PF18255 DNA processing protein A sterile alpha motif domain IHE41_06175 PF04466 Phage terminase large subunit IHE41_06175 PF17288 Terminase RNAseH like domain IHE41_06185 PF02195 ParB-like nuclease domain IHE41_06200 PF07411 Domain of unknown function (DUF1508) IHE41_06230 PF00773 RNB domain IHE41_06230 PF00575 S1 RNA binding domain IHE41_06230 PF08461 Ribonuclease R winged-helix domain IHE41_06230 PF17876 Cold shock domain IHE41_06230 PF08206 Ribonuclease B OB domain IHE41_06235 PF00313 'Cold-shock' DNA-binding domain IHE41_06340 PF14497 Glutathione S-transferase, C-terminal domain IHE41_06340 PF02798 Glutathione S-transferase, N-terminal domain IHE41_06350 PF04209 homogentisate 1,2-dioxygenase IHE41_06355 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IHE41_06360 PF07687 Peptidase dimerisation domain IHE41_06360 PF01546 Peptidase family M20/M25/M40 IHE41_06365 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IHE41_06370 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_06375 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_06375 PF12911 N-terminal TM domain of oligopeptide transport permease C IHE41_06380 PF00005 ABC transporter IHE41_06380 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IHE41_06385 PF00005 ABC transporter IHE41_06385 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IHE41_06395 PF01752 Collagenase IHE41_06395 PF08453 Peptidase family M9 N-terminal IHE41_06405 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_06410 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_06415 PF08402 TOBE domain IHE41_06415 PF00005 ABC transporter IHE41_06420 PF00701 Dihydrodipicolinate synthetase family IHE41_06425 PF02423 Ornithine cyclodeaminase/mu-crystallin family IHE41_06440 PF05544 Proline racemase IHE41_06445 PF00171 Aldehyde dehydrogenase family IHE41_06450 PF00392 Bacterial regulatory proteins, gntR family IHE41_06470 PF05971 RNA methyltransferase IHE41_06475 PF01863 Protein of unknown function DUF45 IHE41_06480 PF04991 LicD family IHE41_06485 PF16363 GDP-mannose 4,6 dehydratase IHE41_06490 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase IHE41_06510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_06510 PF03466 LysR substrate binding domain IHE41_06530 PF00005 ABC transporter IHE41_06535 PF01032 FecCD transport family IHE41_06540 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family IHE41_06555 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase IHE41_06560 PF02654 Cobalamin-5-phosphate synthase IHE41_06565 PF02277 Phosphoribosyltransferase IHE41_06570 PF13460 NAD(P)H-binding IHE41_06575 PF00375 Sodium:dicarboxylate symporter family IHE41_06580 PF08411 Exonuclease C-terminal IHE41_06580 PF00929 Exonuclease IHE41_06585 PF03788 LrgA family IHE41_06590 PF04172 LrgB-like family IHE41_06595 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region IHE41_06595 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region IHE41_06600 PF02222 ATP-grasp domain IHE41_06605 PF05724 Thiopurine S-methyltransferase (TPMT) IHE41_06615 PF00216 Bacterial DNA-binding protein IHE41_06625 PF03483 B3/4 domain IHE41_06625 PF03484 tRNA synthetase B5 domain IHE41_06625 PF03147 Ferredoxin-fold anticodon binding domain IHE41_06625 PF01588 Putative tRNA binding domain IHE41_06625 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain IHE41_06630 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain IHE41_06630 PF01409 tRNA synthetases class II core domain (F) IHE41_06635 PF17158 Membrane-associated sensor, integral membrane domain IHE41_06635 PF00990 Diguanylate cyclase, GGDEF domain IHE41_06665 PF01906 Putative heavy-metal-binding IHE41_06670 PF00453 Ribosomal protein L20 IHE41_06675 PF01632 Ribosomal protein L35 IHE41_06680 PF05198 Translation initiation factor IF-3, N-terminal domain IHE41_06680 PF00707 Translation initiation factor IF-3, C-terminal domain IHE41_06685 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IHE41_06685 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IHE41_06685 PF03129 Anticodon binding domain IHE41_06685 PF02824 TGS domain IHE41_06700 PF00392 Bacterial regulatory proteins, gntR family IHE41_06700 PF07702 UTRA domain IHE41_06705 PF01979 Amidohydrolase family IHE41_06710 PF00491 Arginase family IHE41_06715 PF17392 Urocanase C-terminal domain IHE41_06715 PF17391 Urocanase N-terminal domain IHE41_06715 PF01175 Urocanase Rossmann-like domain IHE41_06720 PF00221 Aromatic amino acid lyase IHE41_06730 PF04191 Phospholipid methyltransferase IHE41_06735 PF02913 FAD linked oxidases, C-terminal domain IHE41_06735 PF01565 FAD binding domain IHE41_06735 PF13183 4Fe-4S dicluster domain IHE41_06750 PF05736 OprF membrane domain IHE41_06750 PF00691 OmpA family IHE41_06770 PF01259 SAICAR synthetase IHE41_06775 PF16655 PhoD-like phosphatase, N-terminal domain IHE41_06775 PF09423 PhoD-like phosphatase IHE41_06785 PF02253 Phospholipase A1 IHE41_06790 PF08482 ATP-dependent helicase C-terminal IHE41_06790 PF00271 Helicase conserved C-terminal domain IHE41_06790 PF04408 Helicase associated domain (HA2) IHE41_06790 PF00270 DEAD/DEAH box helicase IHE41_06795 PF03949 Malic enzyme, NAD binding domain IHE41_06795 PF00390 Malic enzyme, N-terminal domain IHE41_06800 PF02698 DUF218 domain IHE41_06805 PF00939 Sodium:sulfate symporter transmembrane region IHE41_06810 PF00072 Response regulator receiver domain IHE41_06810 PF00990 Diguanylate cyclase, GGDEF domain IHE41_06820 PF00266 Aminotransferase class-V IHE41_06830 PF07992 Pyridine nucleotide-disulphide oxidoreductase IHE41_06835 PF00664 ABC transporter transmembrane region IHE41_06835 PF00005 ABC transporter IHE41_06840 PF00664 ABC transporter transmembrane region IHE41_06840 PF00005 ABC transporter IHE41_06845 PF00291 Pyridoxal-phosphate dependent enzyme IHE41_06850 PF00266 Aminotransferase class-V IHE41_06860 PF00497 Bacterial extracellular solute-binding proteins, family 3 IHE41_06860 PF00512 His Kinase A (phospho-acceptor) domain IHE41_06860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_06875 PF04993 TfoX N-terminal domain IHE41_06875 PF04994 TfoX C-terminal domain IHE41_06885 PF03956 Lysine exporter LysO IHE41_06895 PF00282 Pyridoxal-dependent decarboxylase conserved domain IHE41_06900 PF01418 Helix-turn-helix domain, rpiR family IHE41_06900 PF01380 SIS domain IHE41_06905 PF00465 Iron-containing alcohol dehydrogenase IHE41_06910 PF00462 Glutaredoxin IHE41_06915 PF02080 TrkA-C domain IHE41_06915 PF06826 Predicted Permease Membrane Region IHE41_06920 PF12241 Trans-2-enoyl-CoA reductase catalytic region IHE41_06920 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase IHE41_06920 PF07055 Enoyl reductase FAD binding domain IHE41_06925 PF09317 Domain of unknown function (DUF1974) IHE41_06925 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IHE41_06925 PF02770 Acyl-CoA dehydrogenase, middle domain IHE41_06925 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IHE41_06930 PF00440 Bacterial regulatory proteins, tetR family IHE41_06930 PF16295 Tetracyclin repressor-like, C-terminal domain IHE41_06935 PF06965 Na+/H+ antiporter 1 IHE41_06950 PF00005 ABC transporter IHE41_06955 PF01554 MatE IHE41_06960 PF11066 Protein of unknown function (DUF2867) IHE41_06960 PF13460 NAD(P)H-binding IHE41_06965 PF03264 NapC/NirT cytochrome c family, N-terminal region IHE41_06980 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) IHE41_06995 PF07690 Major Facilitator Superfamily IHE41_07000 PF00849 RNA pseudouridylate synthase IHE41_07000 PF01479 S4 domain IHE41_07005 PF00271 Helicase conserved C-terminal domain IHE41_07005 PF04851 Type III restriction enzyme, res subunit IHE41_07015 PF00072 Response regulator receiver domain IHE41_07015 PF00486 Transcriptional regulatory protein, C terminal IHE41_07020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_07025 PF01386 Ribosomal L25p family IHE41_07040 PF02872 5'-nucleotidase, C-terminal domain IHE41_07040 PF00149 Calcineurin-like phosphoesterase IHE41_07050 PF06945 Protein of unknown function (DUF1289) IHE41_07060 PF00196 Bacterial regulatory proteins, luxR family IHE41_07060 PF00072 Response regulator receiver domain IHE41_07065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_07065 PF00512 His Kinase A (phospho-acceptor) domain IHE41_07075 PF07992 Pyridine nucleotide-disulphide oxidoreductase IHE41_07075 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster IHE41_07085 PF09335 SNARE associated Golgi protein IHE41_07090 PF13416 Bacterial extracellular solute-binding protein IHE41_07095 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_07100 PF00005 ABC transporter IHE41_07105 PF01066 CDP-alcohol phosphatidyltransferase IHE41_07115 PF00158 Sigma-54 interaction domain IHE41_07115 PF01590 GAF domain IHE41_07120 PF03063 Prismane/CO dehydrogenase family IHE41_07125 PF00175 Oxidoreductase NAD-binding domain IHE41_07125 PF00111 2Fe-2S iron-sulfur cluster binding domain IHE41_07125 PF00970 Oxidoreductase FAD-binding domain IHE41_07135 PF00849 RNA pseudouridylate synthase IHE41_07140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IHE41_07140 PF00672 HAMP domain IHE41_07140 PF12729 Four helix bundle sensory module for signal transduction IHE41_07145 PF00209 Sodium:neurotransmitter symporter family IHE41_07150 PF13091 PLD-like domain IHE41_07150 PF13396 Phospholipase_D-nuclease N-terminal IHE41_07155 PF01053 Cys/Met metabolism PLP-dependent enzyme IHE41_07160 PF00561 alpha/beta hydrolase fold IHE41_07165 PF03280 Proteobacterial lipase chaperone protein IHE41_07170 PF03352 Methyladenine glycosylase IHE41_07170 PF00958 GMP synthase C terminal domain IHE41_07170 PF13673 Acetyltransferase (GNAT) domain IHE41_07170 PF00117 Glutamine amidotransferase class-I IHE41_07170 PF13302 Acetyltransferase (GNAT) domain IHE41_07175 PF00873 AcrB/AcrD/AcrF family IHE41_07185 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IHE41_07190 PF04024 PspC domain IHE41_07195 PF06667 Phage shock protein B IHE41_07200 PF04012 PspA/IM30 family IHE41_07205 PF00158 Sigma-54 interaction domain IHE41_07205 PF02954 Bacterial regulatory protein, Fis family IHE41_07210 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IHE41_07215 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_07220 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_07220 PF12911 N-terminal TM domain of oligopeptide transport permease C IHE41_07225 PF00005 ABC transporter IHE41_07225 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IHE41_07230 PF00005 ABC transporter IHE41_07240 PF02833 DHHA2 domain IHE41_07240 PF01368 DHH family IHE41_07250 PF16874 Glycosyl hydrolase family 36 C-terminal domain IHE41_07250 PF16875 Glycosyl hydrolase family 36 N-terminal domain IHE41_07255 PF01568 Molydopterin dinucleotide binding domain IHE41_07255 PF18364 Molybdopterin oxidoreductase N-terminal domain IHE41_07255 PF00384 Molybdopterin oxidoreductase IHE41_07260 PF03264 NapC/NirT cytochrome c family, N-terminal region IHE41_07265 PF06796 Periplasmic nitrate reductase protein NapE IHE41_07270 PF03649 Uncharacterised protein family (UPF0014) IHE41_07280 PF01226 Formate/nitrite transporter IHE41_07305 PF02698 DUF218 domain IHE41_07310 PF00265 Thymidine kinase IHE41_07315 PF01406 tRNA synthetases class I (C) catalytic domain IHE41_07315 PF09190 DALR domain IHE41_07320 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD IHE41_07325 PF00149 Calcineurin-like phosphoesterase IHE41_07330 PF00563 EAL domain IHE41_07330 PF08668 HDOD domain IHE41_07335 PF02810 SEC-C motif IHE41_07340 PF01502 Phosphoribosyl-AMP cyclohydrolase IHE41_07340 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase IHE41_07345 PF00977 Histidine biosynthesis protein IHE41_07385 PF00977 Histidine biosynthesis protein IHE41_07390 PF00117 Glutamine amidotransferase class-I IHE41_07395 PF00475 Imidazoleglycerol-phosphate dehydratase IHE41_07395 PF08645 Polynucleotide kinase 3 phosphatase IHE41_07400 PF00155 Aminotransferase class I and II IHE41_07405 PF00815 Histidinol dehydrogenase IHE41_07410 PF01634 ATP phosphoribosyltransferase IHE41_07410 PF08029 HisG, C-terminal domain IHE41_07415 PF00158 Sigma-54 interaction domain IHE41_07415 PF00072 Response regulator receiver domain IHE41_07415 PF02954 Bacterial regulatory protein, Fis family IHE41_07425 PF03553 Na+/H+ antiporter family IHE41_07430 PF00816 H-NS histone family IHE41_07435 PF00294 pfkB family carbohydrate kinase IHE41_07450 PF04356 Protein of unknown function (DUF489) IHE41_07455 PF08328 Adenylosuccinate lyase C-terminal IHE41_07455 PF00206 Lyase IHE41_07490 PF00106 short chain dehydrogenase IHE41_07500 PF01435 Peptidase family M48 IHE41_07515 PF08241 Methyltransferase domain IHE41_07520 PF00155 Aminotransferase class I and II IHE41_07525 PF06968 Biotin and Thiamin Synthesis associated domain IHE41_07525 PF04055 Radical SAM superfamily IHE41_07530 PF00202 Aminotransferase class-III IHE41_07535 PF01258 Prokaryotic dksA/traR C4-type zinc finger IHE41_07550 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IHE41_07550 PF02403 Seryl-tRNA synthetase N-terminal domain IHE41_07555 PF00004 ATPase family associated with various cellular activities (AAA) IHE41_07555 PF16193 AAA C-terminal domain IHE41_07555 PF12002 MgsA AAA+ ATPase C terminal IHE41_07560 PF03548 Outer membrane lipoprotein carrier protein LolA IHE41_07565 PF13491 4TM region of DNA translocase FtsK/SpoIIIE IHE41_07565 PF17854 FtsK alpha domain IHE41_07565 PF09397 Ftsk gamma domain IHE41_07565 PF01580 FtsK/SpoIIIE family IHE41_07570 PF01037 Lrp/AsnC ligand binding domain IHE41_07575 PF05222 Alanine dehydrogenase/PNT, N-terminal domain IHE41_07575 PF01262 Alanine dehydrogenase/PNT, C-terminal domain IHE41_07585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_07585 PF03466 LysR substrate binding domain IHE41_07595 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) IHE41_07600 PF03372 Endonuclease/Exonuclease/phosphatase family IHE41_07610 PF00579 tRNA synthetases class I (W and Y) IHE41_07625 PF00873 AcrB/AcrD/AcrF family IHE41_07630 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IHE41_07630 PF00529 HlyD membrane-fusion protein of T1SS IHE41_07635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IHE41_07635 PF00672 HAMP domain IHE41_07635 PF12729 Four helix bundle sensory module for signal transduction IHE41_07650 PF02796 Helix-turn-helix domain of resolvase IHE41_07650 PF00239 Resolvase, N terminal domain IHE41_07655 PF00075 RNase H IHE41_07685 PF06610 L-alanine exporter IHE41_07690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_07690 PF00512 His Kinase A (phospho-acceptor) domain IHE41_07690 PF09308 LuxQ, periplasmic IHE41_07690 PF00072 Response regulator receiver domain IHE41_07700 PF03738 Glutathionylspermidine synthase preATP-grasp IHE41_07710 PF03994 Domain of Unknown Function (DUF350) IHE41_07720 PF02445 Quinolinate synthetase A protein IHE41_07725 PF16331 TolA binding protein trimerisation IHE41_07725 PF13174 Tetratricopeptide repeat IHE41_07730 PF00691 OmpA family IHE41_07735 PF07676 WD40-like Beta Propeller Repeat IHE41_07735 PF04052 TolB amino-terminal domain IHE41_07745 PF02472 Biopolymer transport protein ExbD/TolR IHE41_07750 PF01618 MotA/TolQ/ExbB proton channel family IHE41_07755 PF03061 Thioesterase superfamily IHE41_07765 PF08173 Membrane bound YbgT-like protein IHE41_07770 PF02322 Cytochrome bd terminal oxidase subunit II IHE41_07775 PF01654 Cytochrome bd terminal oxidase subunit I IHE41_07780 PF17864 RuvB AAA lid domain IHE41_07780 PF05491 RuvB C-terminal winged helix domain IHE41_07780 PF05496 Holliday junction DNA helicase RuvB P-loop domain IHE41_07785 PF07499 RuvA, C-terminal domain IHE41_07785 PF01330 RuvA N terminal domain IHE41_07790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IHE41_07790 PF00672 HAMP domain IHE41_07790 PF02203 Tar ligand binding domain homologue IHE41_07795 PF02075 Crossover junction endodeoxyribonuclease RuvC IHE41_07800 PF02938 GAD domain IHE41_07800 PF00152 tRNA synthetases class II (D, K and N) IHE41_07800 PF01336 OB-fold nucleic acid binding domain IHE41_07805 PF01904 Protein of unknown function DUF72 IHE41_07810 PF13649 Methyltransferase domain IHE41_07815 PF08003 Protein of unknown function (DUF1698) IHE41_07820 PF08443 RimK-like ATP-grasp domain IHE41_07820 PF18030 RimK PreATP-grasp domain IHE41_07830 PF18030 RimK PreATP-grasp domain IHE41_07830 PF08443 RimK-like ATP-grasp domain IHE41_07840 PF04310 MukB N-terminal IHE41_07840 PF16330 MukB hinge domain IHE41_07845 PF04288 MukE-like family IHE41_07850 PF03882 MukF winged-helix domain IHE41_07850 PF17193 MukF C-terminal domain IHE41_07850 PF17192 MukF middle domain IHE41_07855 PF13847 Methyltransferase domain IHE41_07860 PF02698 DUF218 domain IHE41_07865 PF00072 Response regulator receiver domain IHE41_07865 PF00486 Transcriptional regulatory protein, C terminal IHE41_07870 PF02613 Nitrate reductase delta subunit IHE41_07875 PF00356 Bacterial regulatory proteins, lacI family IHE41_07880 PF04994 TfoX C-terminal domain IHE41_07880 PF04993 TfoX N-terminal domain IHE41_07900 PF08323 Starch synthase catalytic domain IHE41_07900 PF00534 Glycosyl transferases group 1 IHE41_07905 PF00483 Nucleotidyl transferase IHE41_07910 PF01131 DNA topoisomerase IHE41_07910 PF01751 Toprim domain IHE41_07910 PF01396 Topoisomerase DNA binding C4 zinc finger IHE41_07910 PF08272 Topoisomerase I zinc-ribbon-like IHE41_07915 PF10692 Protein of unknown function (DUF2498) IHE41_07920 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) IHE41_07930 PF03588 Leucyl/phenylalanyl-tRNA protein transferase IHE41_07935 PF04377 Arginine-tRNA-protein transferase, C terminus IHE41_07935 PF04376 Arginine-tRNA-protein transferase, N terminus IHE41_07940 PF01176 Translation initiation factor 1A / IF-1 IHE41_07950 PF00004 ATPase family associated with various cellular activities (AAA) IHE41_07950 PF07724 AAA domain (Cdc48 subfamily) IHE41_07950 PF02861 Clp amino terminal domain, pathogenicity island component IHE41_07950 PF10431 C-terminal, D2-small domain, of ClpB protein IHE41_07950 PF17871 AAA lid domain IHE41_07955 PF02617 ATP-dependent Clp protease adaptor protein ClpS IHE41_07960 PF00313 'Cold-shock' DNA-binding domain IHE41_07965 PF03971 Monomeric isocitrate dehydrogenase IHE41_07970 PF00849 RNA pseudouridylate synthase IHE41_07975 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) IHE41_07985 PF06733 DEAD_2 IHE41_07985 PF13307 Helicase C-terminal domain IHE41_07990 PF01925 Sulfite exporter TauE/SafE IHE41_07995 PF07445 Primosomal replication protein priC IHE41_08000 PF10689 Protein of unknown function (DUF2496) IHE41_08005 PF03372 Endonuclease/Exonuclease/phosphatase family IHE41_08015 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_08020 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_08025 PF00497 Bacterial extracellular solute-binding proteins, family 3 IHE41_08030 PF00005 ABC transporter IHE41_08045 PF02901 Pyruvate formate lyase-like IHE41_08045 PF01228 Glycine radical IHE41_08055 PF04055 Radical SAM superfamily IHE41_08065 PF03887 YfbU domain IHE41_08070 PF06798 PrkA serine protein kinase C-terminal domain IHE41_08070 PF08298 PrkA AAA domain IHE41_08075 PF04285 Protein of unknown function (DUF444) IHE41_08080 PF04293 SpoVR like protein IHE41_08085 PF02348 Cytidylyltransferase IHE41_08090 PF03966 Trm112p-like protein IHE41_08095 PF02606 Tetraacyldisaccharide-1-P 4'-kinase IHE41_08100 PF00664 ABC transporter transmembrane region IHE41_08100 PF00005 ABC transporter IHE41_08105 PF03772 Competence protein IHE41_08105 PF13567 Domain of unknown function (DUF4131) IHE41_08105 PF00753 Metallo-beta-lactamase superfamily IHE41_08115 PF12704 MacB-like periplasmic core domain IHE41_08115 PF02687 FtsX-like permease family IHE41_08120 PF00005 ABC transporter IHE41_08125 PF02687 FtsX-like permease family IHE41_08125 PF12704 MacB-like periplasmic core domain IHE41_08135 PF17757 UvrB interaction domain IHE41_08135 PF03461 TRCF domain IHE41_08135 PF00271 Helicase conserved C-terminal domain IHE41_08135 PF02559 CarD-like/TRCF domain IHE41_08135 PF00270 DEAD/DEAH box helicase IHE41_08150 PF07992 Pyridine nucleotide-disulphide oxidoreductase IHE41_08155 PF05728 Uncharacterised protein family (UPF0227) IHE41_08165 PF13036 Peptidoglycan-synthase activator LpoB IHE41_08165 PF08139 Prokaryotic membrane lipoprotein lipid attachment site IHE41_08180 PF01230 HIT domain IHE41_08185 PF00672 HAMP domain IHE41_08185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IHE41_08195 PF01048 Phosphorylase superfamily IHE41_08200 PF00403 Heavy-metal-associated domain IHE41_08205 PF00478 IMP dehydrogenase / GMP reductase domain IHE41_08205 PF00571 CBS domain IHE41_08215 PF00037 4Fe-4S binding domain IHE41_08215 PF11953 Domain of unknown function (DUF3470) IHE41_08220 PF08032 RNA 2'-O ribose methyltransferase substrate binding IHE41_08220 PF00588 SpoU rRNA Methylase family IHE41_08230 PF17152 Periplasmic sensor domain IHE41_08230 PF00990 Diguanylate cyclase, GGDEF domain IHE41_08240 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain IHE41_08245 PF09619 Type III secretion system lipoprotein chaperone (YscW) IHE41_08260 PF00291 Pyridoxal-phosphate dependent enzyme IHE41_08280 PF00873 AcrB/AcrD/AcrF family IHE41_08285 PF13533 Biotin-lipoyl like IHE41_08330 PF07690 Major Facilitator Superfamily IHE41_08335 PF03601 Conserved hypothetical protein 698 IHE41_08345 PF13193 AMP-binding enzyme C-terminal domain IHE41_08345 PF00501 AMP-binding enzyme IHE41_08350 PF13378 Enolase C-terminal domain-like IHE41_08355 PF00378 Enoyl-CoA hydratase/isomerase IHE41_08360 PF12697 Alpha/beta hydrolase family IHE41_08365 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IHE41_08365 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IHE41_08365 PF16582 Middle domain of thiamine pyrophosphate IHE41_08370 PF00425 chorismate binding enzyme IHE41_08375 PF00155 Aminotransferase class I and II IHE41_08385 PF01966 HD domain IHE41_08385 PF13286 Phosphohydrolase-associated domain IHE41_08405 PF13145 PPIC-type PPIASE domain IHE41_08410 PF00216 Bacterial DNA-binding protein IHE41_08415 PF05362 Lon protease (S16) C-terminal proteolytic domain IHE41_08415 PF00004 ATPase family associated with various cellular activities (AAA) IHE41_08415 PF02190 ATP-dependent protease La (LON) substrate-binding domain IHE41_08420 PF07724 AAA domain (Cdc48 subfamily) IHE41_08420 PF10431 C-terminal, D2-small domain, of ClpB protein IHE41_08420 PF06689 ClpX C4-type zinc finger IHE41_08425 PF00574 Clp protease IHE41_08430 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IHE41_08430 PF05698 Bacterial trigger factor protein (TF) C-terminus IHE41_08430 PF05697 Bacterial trigger factor protein (TF) IHE41_08440 PF02743 Cache domain IHE41_08440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_08440 PF00512 His Kinase A (phospho-acceptor) domain IHE41_08445 PF00158 Sigma-54 interaction domain IHE41_08445 PF00072 Response regulator receiver domain IHE41_08445 PF02954 Bacterial regulatory protein, Fis family IHE41_08455 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component IHE41_08460 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component IHE41_08465 PF03480 Bacterial extracellular solute-binding protein, family 7 IHE41_08470 PF02696 Uncharacterized ACR, YdiU/UPF0061 family IHE41_08485 PF02386 Cation transport protein IHE41_08490 PF02080 TrkA-C domain IHE41_08490 PF02254 TrkA-N domain IHE41_08495 PF00270 DEAD/DEAH box helicase IHE41_08495 PF00271 Helicase conserved C-terminal domain IHE41_08500 PF01595 Cyclin M transmembrane N-terminal domain IHE41_08500 PF00571 CBS domain IHE41_08500 PF03471 Transporter associated domain IHE41_08510 PF04820 Tryptophan halogenase IHE41_08535 PF00550 Phosphopantetheine attachment site IHE41_08540 PF00550 Phosphopantetheine attachment site IHE41_08555 PF07977 FabA-like domain IHE41_08560 PF00535 Glycosyl transferase family 2 IHE41_08565 PF00221 Aromatic amino acid lyase IHE41_08590 PF00109 Beta-ketoacyl synthase, N-terminal domain IHE41_08590 PF02801 Beta-ketoacyl synthase, C-terminal domain IHE41_08595 PF07977 FabA-like domain IHE41_08605 PF00109 Beta-ketoacyl synthase, N-terminal domain IHE41_08605 PF02801 Beta-ketoacyl synthase, C-terminal domain IHE41_08615 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) IHE41_08625 PF00239 Resolvase, N terminal domain IHE41_08625 PF02796 Helix-turn-helix domain of resolvase IHE41_08650 PF00589 Phage integrase family IHE41_08660 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain IHE41_08660 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain IHE41_08665 PF07662 Na+ dependent nucleoside transporter C-terminus IHE41_08665 PF07670 Nucleoside recognition IHE41_08665 PF01773 Na+ dependent nucleoside transporter N-terminus IHE41_08670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_08670 PF03466 LysR substrate binding domain IHE41_08675 PF13406 Transglycosylase SLT domain IHE41_08680 PF05166 YcgL domain IHE41_08685 PF03775 Septum formation inhibitor MinC, C-terminal domain IHE41_08685 PF05209 Septum formation inhibitor MinC, N-terminal domain IHE41_08690 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain IHE41_08695 PF03776 Septum formation topological specificity factor MinE IHE41_08700 PF01612 3'-5' exonuclease IHE41_08700 PF00570 HRDC domain IHE41_08705 PF00501 AMP-binding enzyme IHE41_08705 PF13193 AMP-binding enzyme C-terminal domain IHE41_08710 PF00561 alpha/beta hydrolase fold IHE41_08725 PF00814 Glycoprotease family IHE41_08730 PF13307 Helicase C-terminal domain IHE41_08730 PF04851 Type III restriction enzyme, res subunit IHE41_08735 PF01842 ACT domain IHE41_08735 PF00551 Formyl transferase IHE41_08740 PF06185 YecM protein IHE41_08745 PF00750 tRNA synthetases class I (R) IHE41_08745 PF05746 DALR anticodon binding domain IHE41_08745 PF03485 Arginyl tRNA synthetase N terminal domain IHE41_08760 PF07664 Ferrous iron transport protein B C terminus IHE41_08760 PF17910 FeoB cytosolic helical domain IHE41_08760 PF02421 Ferrous iron transport protein B IHE41_08760 PF07670 Nucleoside recognition IHE41_08765 PF04023 FeoA domain IHE41_08770 PF02311 AraC-like ligand binding domain IHE41_08770 PF12833 Helix-turn-helix domain IHE41_08775 PF01297 Zinc-uptake complex component A periplasmic IHE41_08780 PF00005 ABC transporter IHE41_08785 PF00950 ABC 3 transport family IHE41_08790 PF02629 CoA binding domain IHE41_08790 PF00549 CoA-ligase IHE41_08795 PF08442 ATP-grasp domain IHE41_08795 PF00549 CoA-ligase IHE41_08800 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IHE41_08800 PF02817 e3 binding domain IHE41_08800 PF00364 Biotin-requiring enzyme IHE41_08805 PF00676 Dehydrogenase E1 component IHE41_08805 PF16870 2-oxoglutarate dehydrogenase C-terminal IHE41_08805 PF16078 2-oxoglutarate dehydrogenase N-terminus IHE41_08805 PF02779 Transketolase, pyrimidine binding domain IHE41_08810 PF13085 2Fe-2S iron-sulfur cluster binding domain IHE41_08815 PF00890 FAD binding domain IHE41_08815 PF02910 Fumarate reductase flavoprotein C-term IHE41_08820 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit IHE41_08825 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit IHE41_08830 PF00285 Citrate synthase, C-terminal domain IHE41_08835 PF01784 NIF3 (NGG1p interacting factor 3) IHE41_08845 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IHE41_08845 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IHE41_08845 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IHE41_08845 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IHE41_08850 PF03925 SeqA protein C-terminal domain IHE41_08850 PF17206 SeqA protein N-terminal domain IHE41_08855 PF12697 Alpha/beta hydrolase family IHE41_08865 PF00258 Flavodoxin IHE41_08875 PF01475 Ferric uptake regulator family IHE41_08880 PF00749 tRNA synthetases class I (E and Q), catalytic domain IHE41_08880 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain IHE41_08885 PF00367 phosphotransferase system, EIIB IHE41_08885 PF02378 Phosphotransferase system, EIIC IHE41_08890 PF01979 Amidohydrolase family IHE41_08895 PF01047 MarR family IHE41_08895 PF00480 ROK family IHE41_08900 PF00999 Sodium/hydrogen exchanger family IHE41_08900 PF02254 TrkA-N domain IHE41_08905 PF00733 Asparagine synthase IHE41_08905 PF13537 Glutamine amidotransferase domain IHE41_08910 PF02357 Transcription termination factor nusG IHE41_08915 PF00854 POT family IHE41_08920 PF00762 Ferrochelatase IHE41_08925 PF05191 Adenylate kinase, active site lid IHE41_08930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_08930 PF00183 Hsp90 protein IHE41_08935 PF00486 Transcriptional regulatory protein, C terminal IHE41_08940 PF17323 Trans-membrane regulatory protein ToxS IHE41_08955 PF12850 Calcineurin-like phosphoesterase superfamily domain IHE41_08970 PF07556 Protein of unknown function (DUF1538) IHE41_08975 PF07556 Protein of unknown function (DUF1538) IHE41_08980 PF01370 NAD dependent epimerase/dehydratase family IHE41_08980 PF08338 Domain of unknown function (DUF1731) IHE41_08985 PF00106 short chain dehydrogenase IHE41_08990 PF00085 Thioredoxin IHE41_08995 PF01145 SPFH domain / Band 7 family IHE41_08995 PF16200 C-terminal region of band_7 IHE41_09010 PF03573 outer membrane porin, OprD family IHE41_09015 PF12826 Helix-hairpin-helix motif IHE41_09015 PF03119 NAD-dependent DNA ligase C4 zinc finger domain IHE41_09015 PF00533 BRCA1 C Terminus (BRCT) domain IHE41_09015 PF01653 NAD-dependent DNA ligase adenylation domain IHE41_09015 PF03120 NAD-dependent DNA ligase OB-fold domain IHE41_09020 PF04354 ZipA, C-terminal FtsZ-binding domain IHE41_09030 PF00291 Pyridoxal-phosphate dependent enzyme IHE41_09035 PF00381 PTS HPr component phosphorylation site IHE41_09040 PF00391 PEP-utilising enzyme, mobile domain IHE41_09040 PF02896 PEP-utilising enzyme, TIM barrel domain IHE41_09040 PF05524 PEP-utilising enzyme, N-terminal IHE41_09045 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 IHE41_09050 PF00700 Bacterial flagellin C-terminal helical region IHE41_09050 PF07196 Flagellin hook IN motif IHE41_09050 PF00669 Bacterial flagellin N-terminal helical region IHE41_09055 PF00700 Bacterial flagellin C-terminal helical region IHE41_09055 PF07196 Flagellin hook IN motif IHE41_09055 PF00669 Bacterial flagellin N-terminal helical region IHE41_09060 PF00700 Bacterial flagellin C-terminal helical region IHE41_09060 PF07196 Flagellin hook IN motif IHE41_09060 PF00669 Bacterial flagellin N-terminal helical region IHE41_09065 PF00669 Bacterial flagellin N-terminal helical region IHE41_09070 PF07196 Flagellin hook IN motif IHE41_09070 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IHE41_09075 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase IHE41_09075 PF10135 Rod binding protein IHE41_09080 PF02119 Flagellar P-ring protein IHE41_09085 PF02107 Flagellar L-ring protein IHE41_09090 PF00460 Flagella basal body rod protein IHE41_09090 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IHE41_09095 PF00460 Flagella basal body rod protein IHE41_09095 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IHE41_09100 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IHE41_09100 PF00460 Flagella basal body rod protein IHE41_09100 PF07559 Flagellar basal body protein FlaE IHE41_09105 PF03963 Flagellar hook capping protein - N-terminal region IHE41_09105 PF13861 FlgD Tudor-like domain IHE41_09105 PF13860 FlgD Ig-like domain IHE41_09110 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IHE41_09110 PF00460 Flagella basal body rod protein IHE41_09115 PF00460 Flagella basal body rod protein IHE41_09120 PF01739 CheR methyltransferase, SAM binding domain IHE41_09120 PF03705 CheR methyltransferase, all-alpha domain IHE41_09125 PF01584 CheW-like domain IHE41_09125 PF00072 Response regulator receiver domain IHE41_09170 PF00691 OmpA family IHE41_09170 PF01389 OmpA-like transmembrane domain IHE41_09175 PF00749 tRNA synthetases class I (E and Q), catalytic domain IHE41_09180 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) IHE41_09185 PF13609 Gram-negative porin IHE41_09190 PF00403 Heavy-metal-associated domain IHE41_09205 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain IHE41_09205 PF00728 Glycosyl hydrolase family 20, catalytic domain IHE41_09205 PF02838 Glycosyl hydrolase family 20, domain 2 IHE41_09205 PF03173 Putative carbohydrate binding domain IHE41_09225 PF01713 Smr domain IHE41_09230 PF01479 S4 domain IHE41_09230 PF00849 RNA pseudouridylate synthase IHE41_09235 PF04073 Aminoacyl-tRNA editing domain IHE41_09240 PF02872 5'-nucleotidase, C-terminal domain IHE41_09240 PF00149 Calcineurin-like phosphoesterase IHE41_09245 PF00793 DAHP synthetase I family IHE41_09250 PF13369 Transglutaminase-like superfamily IHE41_09255 PF04247 Invasion gene expression up-regulator, SirB IHE41_09260 PF13847 Methyltransferase domain IHE41_09260 PF17827 PrmC N-terminal domain IHE41_09265 PF00472 RF-1 domain IHE41_09265 PF03462 PCRF domain IHE41_09270 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain IHE41_09270 PF01488 Shikimate / quinate 5-dehydrogenase IHE41_09270 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain IHE41_09275 PF03550 Outer membrane lipoprotein LolB IHE41_09280 PF08544 GHMP kinases C terminal IHE41_09280 PF00288 GHMP kinases N terminal domain IHE41_09285 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase IHE41_09285 PF14572 Phosphoribosyl synthetase-associated domain IHE41_09290 PF01195 Peptidyl-tRNA hydrolase IHE41_09295 PF06071 Protein of unknown function (DUF933) IHE41_09295 PF01926 50S ribosome-binding GTPase IHE41_09410 PF01494 FAD binding domain IHE41_09415 PF04055 Radical SAM superfamily IHE41_09415 PF01938 TRAM domain IHE41_09415 PF00919 Uncharacterized protein family UPF0004 IHE41_09420 PF02562 PhoH-like protein IHE41_09425 PF02130 Uncharacterized protein family UPF0054 IHE41_09430 PF00571 CBS domain IHE41_09430 PF03471 Transporter associated domain IHE41_09435 PF00795 Carbon-nitrogen hydrolase IHE41_09440 PF07295 Zinc-ribbon containing domain IHE41_09445 PF08264 Anticodon-binding domain of tRNA IHE41_09445 PF00133 tRNA synthetases class I (I, L, M and V) IHE41_09445 PF13603 Leucyl-tRNA synthetase, Domain 2 IHE41_09450 PF04390 Lipopolysaccharide-assembly IHE41_09455 PF14840 Processivity clamp loader gamma complex DNA pol III C-term IHE41_09455 PF06144 DNA polymerase III, delta subunit IHE41_09465 PF02590 Predicted SPOUT methyltransferase IHE41_09470 PF03717 Penicillin-binding Protein dimerisation domain IHE41_09470 PF00905 Penicillin binding protein transpeptidase domain IHE41_09475 PF01098 Cell cycle protein IHE41_09480 PF03330 Lytic transglycolase IHE41_09480 PF05036 Sporulation related domain IHE41_09485 PF07943 Penicillin-binding protein 5, C-terminal domain IHE41_09485 PF00768 D-alanyl-D-alanine carboxypeptidase IHE41_09490 PF04359 Protein of unknown function (DUF493) IHE41_09495 PF03099 Biotin/lipoate A/B protein ligase family IHE41_09500 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family IHE41_09500 PF04055 Radical SAM superfamily IHE41_09505 PF00464 Serine hydroxymethyltransferase IHE41_09510 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) IHE41_09510 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 IHE41_09525 PF00128 Alpha amylase, catalytic domain IHE41_09525 PF16657 Maltogenic Amylase, C-terminal domain IHE41_09530 PF00367 phosphotransferase system, EIIB IHE41_09530 PF02378 Phosphotransferase system, EIIC IHE41_09535 PF00356 Bacterial regulatory proteins, lacI family IHE41_09545 PF09383 NIL domain IHE41_09545 PF00005 ABC transporter IHE41_09550 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_09555 PF03180 NLPA lipoprotein IHE41_09560 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) IHE41_09565 PF07348 Syd protein (SUKH-2) IHE41_09570 PF14489 QueF-like protein IHE41_09570 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term IHE41_09580 PF00990 Diguanylate cyclase, GGDEF domain IHE41_09585 PF11892 Domain of unknown function (DUF3412) IHE41_09585 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases IHE41_09585 PF03641 Possible lysine decarboxylase IHE41_09590 PF01367 5'-3' exonuclease, C-terminal SAM fold IHE41_09590 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain IHE41_09595 PF01223 DNA/RNA non-specific endonuclease IHE41_09600 PF18125 RlmM ferredoxin-like domain IHE41_09600 PF01728 FtsJ-like methyltransferase IHE41_09605 PF04241 Protein of unknown function (DUF423) IHE41_09615 PF03466 LysR substrate binding domain IHE41_09615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_09620 PF02568 Thiamine biosynthesis protein (ThiI) IHE41_09620 PF02926 THUMP domain IHE41_09625 PF00691 OmpA family IHE41_09630 PF01618 MotA/TolQ/ExbB proton channel family IHE41_09635 PF02609 Exonuclease VII small subunit IHE41_09640 PF00348 Polyprenyl synthetase IHE41_09645 PF13292 1-deoxy-D-xylulose-5-phosphate synthase IHE41_09645 PF02779 Transketolase, pyrimidine binding domain IHE41_09645 PF02780 Transketolase, C-terminal domain IHE41_09650 PF04608 Phosphatidylglycerophosphatase A IHE41_09655 PF02769 AIR synthase related protein, C-terminal domain IHE41_09655 PF00586 AIR synthase related protein, N-terminal domain IHE41_09660 PF01029 NusB family IHE41_09665 PF00885 6,7-dimethyl-8-ribityllumazine synthase IHE41_09670 PF00925 GTP cyclohydrolase II IHE41_09670 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase IHE41_09675 PF00677 Lumazine binding domain IHE41_09680 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region IHE41_09680 PF01872 RibD C-terminal domain IHE41_09685 PF03477 ATP cone domain IHE41_09690 PF00171 Aldehyde dehydrogenase family IHE41_09695 PF00696 Amino acid kinase family IHE41_09695 PF01472 PUA domain IHE41_09700 PF07417 Sigma factor-binding transcriptional regulator Crl IHE41_09705 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) IHE41_09710 PF00156 Phosphoribosyl transferase domain IHE41_09715 PF00860 Permease family IHE41_09720 PF07687 Peptidase dimerisation domain IHE41_09720 PF01546 Peptidase family M20/M25/M40 IHE41_09745 PF02769 AIR synthase related protein, C-terminal domain IHE41_09745 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal IHE41_09745 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain IHE41_09750 PF00497 Bacterial extracellular solute-binding proteins, family 3 IHE41_09750 PF01464 Transglycosylase SLT domain IHE41_09755 PF14437 MafB19-like deaminase IHE41_09760 PF03806 AbgT putative transporter family IHE41_09780 PF07963 Prokaryotic N-terminal methylation motif IHE41_09780 PF00114 Pilin (bacterial filament) IHE41_09785 PF07963 Prokaryotic N-terminal methylation motif IHE41_09785 PF00114 Pilin (bacterial filament) IHE41_09790 PF00226 DnaJ domain IHE41_09790 PF01556 DnaJ C terminal domain IHE41_09790 PF00684 DnaJ central domain IHE41_09795 PF00012 Hsp70 protein IHE41_09800 PF00375 Sodium:dicarboxylate symporter family IHE41_09805 PF01025 GrpE IHE41_09810 PF01513 ATP-NAD kinase IHE41_09820 PF02463 RecF/RecN/SMC N terminal domain IHE41_09825 PF04355 SmpA / OmlA family IHE41_09830 PF03658 RnfH family Ubiquitin IHE41_09835 PF03364 Polyketide cyclase / dehydrase and lipid transport IHE41_09840 PF01668 SmpB protein IHE41_09865 PF18766 SWI2/SNF2 ATPase IHE41_09865 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) IHE41_09865 PF11867 Domain of unknown function (DUF3387) IHE41_09875 PF02384 N-6 DNA Methylase IHE41_09875 PF12161 HsdM N-terminal domain IHE41_09900 PF03466 LysR substrate binding domain IHE41_09900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_09905 PF00583 Acetyltransferase (GNAT) family IHE41_09905 PF00795 Carbon-nitrogen hydrolase IHE41_09925 PF00202 Aminotransferase class-III IHE41_09930 PF01053 Cys/Met metabolism PLP-dependent enzyme IHE41_09935 PF07969 Amidohydrolase family IHE41_09950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_09950 PF03466 LysR substrate binding domain IHE41_09955 PF01266 FAD dependent oxidoreductase IHE41_09960 PF01235 Sodium:alanine symporter family IHE41_09970 PF01184 GPR1/FUN34/yaaH family IHE41_09975 PF00704 Glycosyl hydrolases family 18 IHE41_09975 PF06483 Chitinase C IHE41_09980 PF03553 Na+/H+ antiporter family IHE41_09985 PF00117 Glutamine amidotransferase class-I IHE41_09985 PF00958 GMP synthase C terminal domain IHE41_09985 PF02540 NAD synthase IHE41_09990 PF00478 IMP dehydrogenase / GMP reductase domain IHE41_09990 PF00571 CBS domain IHE41_09995 PF02601 Exonuclease VII, large subunit IHE41_09995 PF13742 OB-fold nucleic acid binding domain IHE41_10010 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal IHE41_10010 PF01926 50S ribosome-binding GTPase IHE41_10015 PF13360 PQQ-like domain IHE41_10020 PF09976 Tetratricopeptide repeat-like domain IHE41_10025 PF13393 Histidyl-tRNA synthetase IHE41_10025 PF03129 Anticodon binding domain IHE41_10030 PF04551 GcpE protein IHE41_10035 PF13464 Domain of unknown function (DUF4115) IHE41_10040 PF04055 Radical SAM superfamily IHE41_10045 PF00334 Nucleoside diphosphate kinase IHE41_10050 PF12404 Peptidase IHE41_10050 PF00883 Cytosol aminopeptidase family, catalytic domain IHE41_10055 PF04384 Iron-sulphur cluster assembly IHE41_10060 PF00111 2Fe-2S iron-sulfur cluster binding domain IHE41_10065 PF00012 Hsp70 protein IHE41_10070 PF07743 HSCB C-terminal oligomerisation domain IHE41_10070 PF00226 DnaJ domain IHE41_10075 PF01521 Iron-sulphur cluster biosynthesis IHE41_10080 PF01592 NifU-like N terminal domain IHE41_10085 PF00266 Aminotransferase class-V IHE41_10090 PF02082 Transcriptional regulator IHE41_10095 PF00588 SpoU rRNA Methylase family IHE41_10100 PF00459 Inositol monophosphatase family IHE41_10105 PF02355 Protein export membrane protein IHE41_10105 PF07549 SecD/SecF GG Motif IHE41_10110 PF13721 SecD export protein N-terminal TM region IHE41_10110 PF02355 Protein export membrane protein IHE41_10110 PF07549 SecD/SecF GG Motif IHE41_10115 PF02699 Preprotein translocase subunit IHE41_10120 PF01702 Queuine tRNA-ribosyltransferase IHE41_10125 PF02547 Queuosine biosynthesis protein IHE41_10135 PF00571 CBS domain IHE41_10140 PF00463 Isocitrate lyase family IHE41_10145 PF01274 Malate synthase IHE41_10150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_10150 PF03466 LysR substrate binding domain IHE41_10155 PF10417 C-terminal domain of 1-Cys peroxiredoxin IHE41_10155 PF00578 AhpC/TSA family IHE41_10160 PF03932 CutC family IHE41_10165 PF03976 Polyphosphate kinase 2 (PPK2) IHE41_10170 PF01895 PhoU domain IHE41_10175 PF00005 ABC transporter IHE41_10180 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_10185 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_10190 PF13089 Polyphosphate kinase N-terminal domain IHE41_10190 PF17941 Polyphosphate kinase C-terminal domain 1 IHE41_10190 PF13090 Polyphosphate kinase C-terminal domain 2 IHE41_10190 PF02503 Polyphosphate kinase middle domain IHE41_10195 PF02541 Ppx/GppA phosphatase family IHE41_10200 PF12849 PBP superfamily domain IHE41_10205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_10205 PF11808 Phosphate regulon sensor protein PhoR IHE41_10205 PF00512 His Kinase A (phospho-acceptor) domain IHE41_10205 PF00989 PAS fold IHE41_10210 PF00072 Response regulator receiver domain IHE41_10210 PF00486 Transcriptional regulatory protein, C terminal IHE41_10215 PF04381 Putative exonuclease, RdgC IHE41_10220 PF16325 Peptidase family U32 C-terminal domain IHE41_10220 PF01136 Peptidase family U32 IHE41_10225 PF00037 4Fe-4S binding domain IHE41_10235 PF03411 Penicillin-insensitive murein endopeptidase IHE41_10280 PF10431 C-terminal, D2-small domain, of ClpB protein IHE41_10280 PF02861 Clp amino terminal domain, pathogenicity island component IHE41_10280 PF17871 AAA lid domain IHE41_10280 PF07724 AAA domain (Cdc48 subfamily) IHE41_10280 PF00004 ATPase family associated with various cellular activities (AAA) IHE41_10285 PF02578 Multi-copper polyphenol oxidoreductase laccase IHE41_10290 PF01479 S4 domain IHE41_10290 PF00849 RNA pseudouridylate synthase IHE41_10295 PF13525 Outer membrane lipoprotein IHE41_10300 PF01464 Transglycosylase SLT domain IHE41_10305 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein IHE41_10310 PF01817 Chorismate mutase type II IHE41_10310 PF00800 Prephenate dehydratase IHE41_10315 PF01931 Protein of unknown function DUF84 IHE41_10320 PF01371 Trp repressor protein IHE41_10325 PF01464 Transglycosylase SLT domain IHE41_10325 PF14718 Soluble lytic murein transglycosylase L domain IHE41_10330 PF00005 ABC transporter IHE41_10330 PF12848 ABC transporter IHE41_10335 PF07238 PilZ domain IHE41_10340 PF04225 Opacity-associated protein A LysM-like domain IHE41_10340 PF01551 Peptidase family M23 IHE41_10345 PF02153 Prephenate dehydrogenase IHE41_10345 PF01817 Chorismate mutase type II IHE41_10350 PF00793 DAHP synthetase I family IHE41_10355 PF00933 Glycosyl hydrolase family 3 N terminal domain IHE41_10360 PF03702 Anhydro-N-acetylmuramic acid kinase IHE41_10365 PF13580 SIS domain IHE41_10380 PF02554 Carbon starvation protein CstA IHE41_10385 PF07694 5TMR of 5TMR-LYT IHE41_10385 PF06580 Histidine kinase IHE41_10390 PF00072 Response regulator receiver domain IHE41_10390 PF04397 LytTr DNA-binding domain IHE41_10395 PF02401 LytB protein IHE41_10400 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IHE41_10405 PF01252 Signal peptidase (SPase) II IHE41_10410 PF08264 Anticodon-binding domain of tRNA IHE41_10410 PF06827 Zinc finger found in FPG and IleRS IHE41_10410 PF00133 tRNA synthetases class I (I, L, M and V) IHE41_10415 PF01687 Riboflavin kinase IHE41_10415 PF06574 FAD synthetase IHE41_10420 PF03023 Lipid II flippase MurJ IHE41_10425 PF01649 Ribosomal protein S20 IHE41_10430 PF01022 Bacterial regulatory protein, arsR family IHE41_10435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_10435 PF03466 LysR substrate binding domain IHE41_10440 PF02690 Na+/Pi-cotransporter IHE41_10450 PF00303 Thymidylate synthase IHE41_10455 PF01790 Prolipoprotein diacylglyceryl transferase IHE41_10460 PF01925 Sulfite exporter TauE/SafE IHE41_10465 PF02896 PEP-utilising enzyme, TIM barrel domain IHE41_10465 PF05524 PEP-utilising enzyme, N-terminal IHE41_10465 PF00391 PEP-utilising enzyme, mobile domain IHE41_10465 PF01590 GAF domain IHE41_10470 PF00293 NUDIX domain IHE41_10475 PF02976 DNA mismatch repair enzyme MutH IHE41_10485 PF00248 Aldo/keto reductase family IHE41_10495 PF02954 Bacterial regulatory protein, Fis family IHE41_10495 PF00158 Sigma-54 interaction domain IHE41_10495 PF00072 Response regulator receiver domain IHE41_10500 PF01336 OB-fold nucleic acid binding domain IHE41_10500 PF00152 tRNA synthetases class II (D, K and N) IHE41_10510 PF02272 DHHA1 domain IHE41_10510 PF01368 DHH family IHE41_10510 PF17768 RecJ OB domain IHE41_10515 PF10411 Disulfide bond isomerase protein N-terminus IHE41_10515 PF13098 Thioredoxin-like domain IHE41_10520 PF02899 Phage integrase, N-terminal SAM-like domain IHE41_10520 PF00589 Phage integrase family IHE41_10525 PF00258 Flavodoxin IHE41_10530 PF05525 Branched-chain amino acid transport protein IHE41_10535 PF05175 Methyltransferase small domain IHE41_10540 PF00270 DEAD/DEAH box helicase IHE41_10540 PF00271 Helicase conserved C-terminal domain IHE41_10545 PF03883 Peroxide stress protein YaaA IHE41_10550 PF01235 Sodium:alanine symporter family IHE41_10565 PF03167 Uracil DNA glycosylase superfamily IHE41_10570 PF01261 Xylose isomerase-like TIM barrel IHE41_10575 PF01228 Glycine radical IHE41_10580 PF00291 Pyridoxal-phosphate dependent enzyme IHE41_10580 PF14821 Threonine synthase N terminus IHE41_10585 PF08544 GHMP kinases C terminal IHE41_10585 PF00288 GHMP kinases N terminal domain IHE41_10590 PF03447 Homoserine dehydrogenase, NAD binding domain IHE41_10590 PF13840 ACT domain IHE41_10590 PF01842 ACT domain IHE41_10590 PF00696 Amino acid kinase family IHE41_10590 PF00742 Homoserine dehydrogenase IHE41_10600 PF03737 Aldolase/RraA IHE41_10610 PF00486 Transcriptional regulatory protein, C terminal IHE41_10610 PF00072 Response regulator receiver domain IHE41_10620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_10620 PF18415 Histidine kinase receptor ArcB trans-membrane domain IHE41_10620 PF01627 Hpt domain IHE41_10620 PF00989 PAS fold IHE41_10620 PF00072 Response regulator receiver domain IHE41_10620 PF00512 His Kinase A (phospho-acceptor) domain IHE41_10625 PF00360 Phytochrome region IHE41_10625 PF00990 Diguanylate cyclase, GGDEF domain IHE41_10625 PF01590 GAF domain IHE41_10625 PF00563 EAL domain IHE41_10630 PF16199 Radical_SAM C-terminal domain IHE41_10630 PF04055 Radical SAM superfamily IHE41_10635 PF01493 GXGXG motif IHE41_10635 PF01645 Conserved region in glutamate synthase IHE41_10635 PF04898 Glutamate synthase central domain IHE41_10635 PF00310 Glutamine amidotransferases class-II IHE41_10640 PF07992 Pyridine nucleotide-disulphide oxidoreductase IHE41_10640 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster IHE41_10645 PF01645 Conserved region in glutamate synthase IHE41_10645 PF04898 Glutamate synthase central domain IHE41_10645 PF00310 Glutamine amidotransferases class-II IHE41_10645 PF01493 GXGXG motif IHE41_10650 PF07992 Pyridine nucleotide-disulphide oxidoreductase IHE41_10650 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster IHE41_10660 PF01048 Phosphorylase superfamily IHE41_10665 PF17113 Regulatory signalling modulator protein AmpE IHE41_10665 PF03186 CobD/Cbib protein IHE41_10670 PF01497 Periplasmic binding protein IHE41_10675 PF03458 UPF0126 domain IHE41_10680 PF03466 LysR substrate binding domain IHE41_10680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_10685 PF01925 Sulfite exporter TauE/SafE IHE41_10695 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain IHE41_10695 PF02142 MGS-like domain IHE41_10695 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IHE41_10700 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain IHE41_10700 PF00117 Glutamine amidotransferase class-I IHE41_10705 PF05173 Dihydrodipicolinate reductase, C-terminus IHE41_10705 PF01113 Dihydrodipicolinate reductase, N-terminus IHE41_10710 PF00293 NUDIX domain IHE41_10715 PF02810 SEC-C motif IHE41_10715 PF01043 SecA preprotein cross-linking domain IHE41_10715 PF07516 SecA Wing and Scaffold domain IHE41_10715 PF07517 SecA DEAD-like domain IHE41_10725 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase IHE41_10730 PF12327 FtsZ family, C-terminal domain IHE41_10730 PF00091 Tubulin/FtsZ family, GTPase domain IHE41_10735 PF02491 SHS2 domain inserted in FTSA IHE41_10740 PF03799 Cell division protein FtsQ IHE41_10740 PF08478 POTRA domain, FtsQ-type IHE41_10745 PF08245 Mur ligase middle domain IHE41_10745 PF01225 Mur ligase family, catalytic domain IHE41_10745 PF02875 Mur ligase family, glutamate ligase domain IHE41_10750 PF03033 Glycosyltransferase family 28 N-terminal domain IHE41_10750 PF04101 Glycosyltransferase family 28 C-terminal domain IHE41_10755 PF01098 Cell cycle protein IHE41_10760 PF08245 Mur ligase middle domain IHE41_10760 PF02875 Mur ligase family, glutamate ligase domain IHE41_10765 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 IHE41_10765 PF00953 Glycosyl transferase family 4 IHE41_10770 PF02875 Mur ligase family, glutamate ligase domain IHE41_10770 PF01225 Mur ligase family, catalytic domain IHE41_10770 PF08245 Mur ligase middle domain IHE41_10775 PF01225 Mur ligase family, catalytic domain IHE41_10775 PF08245 Mur ligase middle domain IHE41_10775 PF02875 Mur ligase family, glutamate ligase domain IHE41_10780 PF00905 Penicillin binding protein transpeptidase domain IHE41_10780 PF03717 Penicillin-binding Protein dimerisation domain IHE41_10785 PF04999 Cell division protein FtsL IHE41_10790 PF01795 MraW methylase family IHE41_10800 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IHE41_10805 PF04348 LppC putative lipoprotein IHE41_10810 PF02021 Uncharacterised protein family UPF0102 IHE41_10815 PF13580 SIS domain IHE41_10820 PF04972 BON domain IHE41_10825 PF04386 Stringent starvation protein B IHE41_10830 PF00043 Glutathione S-transferase, C-terminal domain IHE41_10830 PF02798 Glutathione S-transferase, N-terminal domain IHE41_10835 PF02167 Cytochrome C1 family IHE41_10840 PF00032 Cytochrome b(C-terminal)/b6/petD IHE41_10840 PF00033 Cytochrome b/b6/petB IHE41_10845 PF00355 Rieske [2Fe-2S] domain IHE41_10845 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal IHE41_10850 PF00380 Ribosomal protein S9/S16 IHE41_10855 PF00572 Ribosomal protein L13 IHE41_10860 PF03969 AFG1-like ATPase IHE41_10865 PF06295 Protein of unknown function (DUF1043) IHE41_10870 PF00595 PDZ domain IHE41_10875 PF13180 PDZ domain IHE41_10880 PF03989 DNA gyrase C-terminal domain, beta-propeller IHE41_10880 PF00521 DNA gyrase/topoisomerase IV, subunit A IHE41_10885 PF00204 DNA gyrase B IHE41_10885 PF00986 DNA gyrase B subunit, carboxyl terminus IHE41_10885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_10885 PF01751 Toprim domain IHE41_10890 PF05728 Uncharacterised protein family (UPF0227) IHE41_10895 PF00149 Calcineurin-like phosphoesterase IHE41_10900 PF06853 Protein of unknown function (DUF1249) IHE41_10905 PF00293 NUDIX domain IHE41_10910 PF02321 Outer membrane efflux protein IHE41_10915 PF01467 Cytidylyltransferase-like IHE41_10915 PF00294 pfkB family carbohydrate kinase IHE41_10920 PF03710 Glutamate-ammonia ligase adenylyltransferase IHE41_10920 PF08335 GlnD PII-uridylyltransferase IHE41_10925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IHE41_10925 PF00672 HAMP domain IHE41_10935 PF01928 CYTH domain IHE41_10940 PF01865 Protein of unknown function DUF47 IHE41_10945 PF01384 Phosphate transporter family IHE41_10950 PF08239 Bacterial SH3 domain IHE41_10960 PF13401 AAA domain IHE41_10960 PF01471 Putative peptidoglycan binding domain IHE41_10965 PF12627 Probable RNA and SrmB- binding site of polymerase A IHE41_10965 PF01966 HD domain IHE41_10965 PF01743 Poly A polymerase head domain IHE41_10970 PF02673 Bacitracin resistance protein BacA IHE41_10975 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) IHE41_10980 PF02152 Dihydroneopterin aldolase IHE41_10985 PF02660 Glycerol-3-phosphate acyltransferase IHE41_10990 PF12697 Alpha/beta hydrolase family IHE41_10995 PF00814 Glycoprotease family IHE41_11000 PF01165 Ribosomal protein S21 IHE41_11005 PF09424 Yqey-like protein IHE41_11010 PF01807 CHC2 zinc finger IHE41_11010 PF08275 DNA primase catalytic core, N-terminal domain IHE41_11010 PF08278 DNA primase DnaG DnaB-binding IHE41_11010 PF10410 DnaB-helicase binding domain of primase IHE41_11015 PF04539 Sigma-70 region 3 IHE41_11015 PF04546 Sigma-70, non-essential region IHE41_11015 PF03979 Sigma-70 factor, region 1.1 IHE41_11015 PF00140 Sigma-70 factor, region 1.2 IHE41_11015 PF04542 Sigma-70 region 2 IHE41_11015 PF04545 Sigma-70, region 4 IHE41_11025 PF03180 NLPA lipoprotein IHE41_11055 PF02378 Phosphotransferase system, EIIC IHE41_11055 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit IHE41_11055 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IHE41_11060 PF01232 Mannitol dehydrogenase Rossmann domain IHE41_11060 PF08125 Mannitol dehydrogenase C-terminal domain IHE41_11065 PF05068 Mannitol repressor IHE41_11070 PF13419 Haloacid dehalogenase-like hydrolase IHE41_11075 PF00672 HAMP domain IHE41_11075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_11075 PF00512 His Kinase A (phospho-acceptor) domain IHE41_11080 PF00486 Transcriptional regulatory protein, C terminal IHE41_11080 PF00072 Response regulator receiver domain IHE41_11090 PF01380 SIS domain IHE41_11095 PF08220 DeoR-like helix-turn-helix domain IHE41_11095 PF00455 DeoR C terminal sensor domain IHE41_11100 PF02887 Pyruvate kinase, alpha/beta domain IHE41_11100 PF00224 Pyruvate kinase, barrel domain IHE41_11110 PF00990 Diguanylate cyclase, GGDEF domain IHE41_11115 PF10369 Small subunit of acetolactate synthase IHE41_11120 PF00205 Thiamine pyrophosphate enzyme, central domain IHE41_11120 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IHE41_11120 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IHE41_11125 PF00501 AMP-binding enzyme IHE41_11130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_11130 PF03466 LysR substrate binding domain IHE41_11140 PF01569 PAP2 superfamily IHE41_11150 PF00682 HMGL-like IHE41_11150 PF08502 LeuA allosteric (dimerisation) domain IHE41_11155 PF00180 Isocitrate/isopropylmalate dehydrogenase IHE41_11160 PF00330 Aconitase family (aconitate hydratase) IHE41_11165 PF00694 Aconitase C-terminal domain IHE41_11175 PF05099 Tellurite resistance protein TerB IHE41_11175 PF00226 DnaJ domain IHE41_11180 PF04453 LPS transport system D IHE41_11180 PF03968 OstA-like protein IHE41_11185 PF09312 SurA N-terminal domain IHE41_11190 PF04166 Pyridoxal phosphate biosynthetic protein PdxA IHE41_11195 PF00398 Ribosomal RNA adenine dimethylase IHE41_11200 PF04379 ApaG domain IHE41_11205 PF00149 Calcineurin-like phosphoesterase IHE41_11210 PF00186 Dihydrofolate reductase IHE41_11215 PF12821 Threonine/Serine exporter, ThrE IHE41_11220 PF06738 Putative threonine/serine exporter IHE41_11225 PF01018 GTP1/OBG IHE41_11225 PF01926 50S ribosome-binding GTPase IHE41_11230 PF01016 Ribosomal L27 protein IHE41_11235 PF00829 Ribosomal prokaryotic L21 protein IHE41_11240 PF00348 Polyprenyl synthetase IHE41_11250 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain IHE41_11250 PF00056 lactate/malate dehydrogenase, NAD binding domain IHE41_11255 PF01316 Arginine repressor, DNA binding domain IHE41_11255 PF02863 Arginine repressor, C-terminal domain IHE41_11260 PF16868 NMT1-like family IHE41_11275 PF00005 ABC transporter IHE41_11280 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_11290 PF02441 Flavoprotein IHE41_11295 PF01225 Mur ligase family, catalytic domain IHE41_11295 PF02875 Mur ligase family, glutamate ligase domain IHE41_11295 PF08245 Mur ligase middle domain IHE41_11300 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain IHE41_11305 PF00719 Inorganic pyrophosphatase IHE41_11315 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like IHE41_11320 PF04357 TamB, inner membrane protein subunit of TAM complex IHE41_11325 PF17243 POTRA domain TamA domain 1 IHE41_11325 PF01103 Surface antigen IHE41_11330 PF01625 Peptide methionine sulfoxide reductase IHE41_11335 PF06526 Protein of unknown function (DUF1107) IHE41_11340 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) IHE41_11345 PF10795 Protein of unknown function (DUF2607) IHE41_11355 PF00005 ABC transporter IHE41_11380 PF03600 Citrate transporter IHE41_11380 PF02080 TrkA-C domain IHE41_11385 PF00009 Elongation factor Tu GTP binding domain IHE41_11390 PF01507 Phosphoadenosine phosphosulfate reductase family IHE41_11395 PF10414 Sirohaem synthase dimerisation region IHE41_11395 PF14824 Sirohaem biosynthesis protein central IHE41_11395 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IHE41_11400 PF02872 5'-nucleotidase, C-terminal domain IHE41_11400 PF00149 Calcineurin-like phosphoesterase IHE41_11410 PF03880 DbpA RNA binding domain IHE41_11410 PF00271 Helicase conserved C-terminal domain IHE41_11410 PF00270 DEAD/DEAH box helicase IHE41_11415 PF13673 Acetyltransferase (GNAT) domain IHE41_11425 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IHE41_11425 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase IHE41_11435 PF01196 Ribosomal protein L17 IHE41_11440 PF01000 RNA polymerase Rpb3/RpoA insert domain IHE41_11440 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain IHE41_11440 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain IHE41_11445 PF00163 Ribosomal protein S4/S9 N-terminal domain IHE41_11445 PF01479 S4 domain IHE41_11450 PF00411 Ribosomal protein S11 IHE41_11455 PF00416 Ribosomal protein S13/S18 IHE41_11460 PF00444 Ribosomal protein L36 IHE41_11465 PF00344 SecY translocase IHE41_11470 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A IHE41_11475 PF00327 Ribosomal protein L30p/L7e IHE41_11480 PF00333 Ribosomal protein S5, N-terminal domain IHE41_11480 PF03719 Ribosomal protein S5, C-terminal domain IHE41_11485 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast IHE41_11490 PF00347 Ribosomal protein L6 IHE41_11495 PF00410 Ribosomal protein S8 IHE41_11500 PF00253 Ribosomal protein S14p/S29e IHE41_11505 PF00281 Ribosomal protein L5 IHE41_11505 PF00673 ribosomal L5P family C-terminus IHE41_11510 PF00467 KOW motif IHE41_11510 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 IHE41_11515 PF00238 Ribosomal protein L14p/L23e IHE41_11520 PF00366 Ribosomal protein S17 IHE41_11525 PF00831 Ribosomal L29 protein IHE41_11530 PF00252 Ribosomal protein L16p/L10e IHE41_11535 PF07650 KH domain IHE41_11535 PF00189 Ribosomal protein S3, C-terminal domain IHE41_11540 PF00237 Ribosomal protein L22p/L17e IHE41_11545 PF00203 Ribosomal protein S19 IHE41_11550 PF00181 Ribosomal Proteins L2, RNA binding domain IHE41_11550 PF03947 Ribosomal Proteins L2, C-terminal domain IHE41_11555 PF00276 Ribosomal protein L23 IHE41_11560 PF00573 Ribosomal protein L4/L1 family IHE41_11565 PF00297 Ribosomal protein L3 IHE41_11570 PF00338 Ribosomal protein S10p/S20e IHE41_11575 PF01197 Ribosomal protein L31 IHE41_11580 PF18319 PriA DNA helicase Cys-rich region (CRR) domain IHE41_11580 PF17764 3′ DNA-binding domain (3′BD) IHE41_11580 PF00270 DEAD/DEAH box helicase IHE41_11580 PF18074 Primosomal protein N C-terminal domain IHE41_11580 PF00271 Helicase conserved C-terminal domain IHE41_11585 PF00356 Bacterial regulatory proteins, lacI family IHE41_11595 PF00227 Proteasome subunit IHE41_11600 PF00004 ATPase family associated with various cellular activities (AAA) IHE41_11600 PF07724 AAA domain (Cdc48 subfamily) IHE41_11605 PF01040 UbiA prenyltransferase family IHE41_11610 PF03737 Aldolase/RraA IHE41_11615 PF06005 Cell division protein ZapB IHE41_11620 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded IHE41_11625 PF00455 DeoR C terminal sensor domain IHE41_11625 PF08220 DeoR-like helix-turn-helix domain IHE41_11645 PF00121 Triosephosphate isomerase IHE41_11655 PF00483 Nucleotidyl transferase IHE41_11660 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain IHE41_11660 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IHE41_11660 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IHE41_11665 PF00953 Glycosyl transferase family 4 IHE41_11670 PF00535 Glycosyl transferase family 2 IHE41_11705 PF02350 UDP-N-acetylglucosamine 2-epimerase IHE41_11740 PF06082 Exopolysaccharide biosynthesis protein YbjH IHE41_11745 PF01370 NAD dependent epimerase/dehydratase family IHE41_11750 PF03279 Bacterial lipid A biosynthesis acyltransferase IHE41_11755 PF01075 Glycosyltransferase family 9 (heptosyltransferase) IHE41_11760 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) IHE41_11775 PF00535 Glycosyl transferase family 2 IHE41_11785 PF02911 Formyl transferase, C-terminal domain IHE41_11785 PF00551 Formyl transferase IHE41_11800 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IHE41_11800 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IHE41_11810 PF00975 Thioesterase domain IHE41_11810 PF00501 AMP-binding enzyme IHE41_11810 PF13193 AMP-binding enzyme C-terminal domain IHE41_11810 PF00668 Condensation domain IHE41_11810 PF00550 Phosphopantetheine attachment site IHE41_11815 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family IHE41_11820 PF00483 Nucleotidyl transferase IHE41_11825 PF16363 GDP-mannose 4,6 dehydratase IHE41_11835 PF01219 Prokaryotic diacylglycerol kinase IHE41_11840 PF01075 Glycosyltransferase family 9 (heptosyltransferase) IHE41_11845 PF00535 Glycosyl transferase family 2 IHE41_11850 PF00535 Glycosyl transferase family 2 IHE41_11855 PF05686 Glycosyl transferase family 90 IHE41_11860 PF01467 Cytidylyltransferase-like IHE41_11865 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain IHE41_11865 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain IHE41_11865 PF06827 Zinc finger found in FPG and IleRS IHE41_11875 PF00471 Ribosomal protein L33 IHE41_11880 PF00830 Ribosomal L28 family IHE41_11885 PF04002 RadC-like JAB domain IHE41_11890 PF00672 HAMP domain IHE41_11890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IHE41_11890 PF17200 Single Cache domain 2 IHE41_11895 PF02441 Flavoprotein IHE41_11895 PF04127 DNA / pantothenate metabolism flavoprotein IHE41_11900 PF00440 Bacterial regulatory proteins, tetR family IHE41_11905 PF03279 Bacterial lipid A biosynthesis acyltransferase IHE41_11910 PF00156 Phosphoribosyl transferase domain IHE41_11915 PF03725 3' exoribonuclease family, domain 2 IHE41_11915 PF01138 3' exoribonuclease family, domain 1 IHE41_11920 PF03755 YicC-like family, N-terminal region IHE41_11920 PF08340 Domain of unknown function (DUF1732) IHE41_11930 PF00005 ABC transporter IHE41_11930 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IHE41_11935 PF00005 ABC transporter IHE41_11935 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IHE41_11940 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IHE41_11945 PF12911 N-terminal TM domain of oligopeptide transport permease C IHE41_11945 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_11950 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_11955 PF07715 TonB-dependent Receptor Plug Domain IHE41_11955 PF00593 TonB dependent receptor IHE41_11970 PF01618 MotA/TolQ/ExbB proton channel family IHE41_11975 PF02472 Biopolymer transport protein ExbD/TolR IHE41_11990 PF00625 Guanylate kinase IHE41_11995 PF01192 RNA polymerase Rpb6 IHE41_12000 PF13291 ACT domain IHE41_12000 PF04607 Region found in RelA / SpoT proteins IHE41_12000 PF02824 TGS domain IHE41_12005 PF12105 SpoU, rRNA methylase, C-terminal IHE41_12005 PF00588 SpoU rRNA Methylase family IHE41_12010 PF00270 DEAD/DEAH box helicase IHE41_12010 PF00271 Helicase conserved C-terminal domain IHE41_12010 PF17191 RecG wedge domain IHE41_12015 PF00860 Permease family IHE41_12020 PF00672 HAMP domain IHE41_12020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_12020 PF00512 His Kinase A (phospho-acceptor) domain IHE41_12025 PF00072 Response regulator receiver domain IHE41_12025 PF00486 Transcriptional regulatory protein, C terminal IHE41_12035 PF03449 Transcription elongation factor, N-terminal IHE41_12035 PF01272 Transcription elongation factor, GreA/GreB, C-term IHE41_12045 PF17674 HHH domain IHE41_12045 PF00575 S1 RNA binding domain IHE41_12045 PF09371 Tex-like protein N-terminal domain IHE41_12045 PF16921 Tex protein YqgF-like domain IHE41_12055 PF00561 alpha/beta hydrolase fold IHE41_12060 PF00156 Phosphoribosyl transferase domain IHE41_12065 PF01521 Iron-sulphur cluster biosynthesis IHE41_12065 PF01106 NifU-like domain IHE41_12070 PF00293 NUDIX domain IHE41_12075 PF00459 Inositol monophosphatase family IHE41_12080 PF01203 Type II secretion system (T2SS), protein N IHE41_12085 PF04612 Type II secretion system (T2SS), protein M IHE41_12090 PF12693 GspL periplasmic domain IHE41_12090 PF05134 Type II secretion system (T2SS), protein L IHE41_12095 PF03934 Type II secretion system (T2SS), protein K IHE41_12100 PF07963 Prokaryotic N-terminal methylation motif IHE41_12100 PF11612 Type II secretion system (T2SS), protein J IHE41_12105 PF02501 Type II secretion system (T2SS), protein I IHE41_12105 PF07963 Prokaryotic N-terminal methylation motif IHE41_12110 PF12019 Type II transport protein GspH IHE41_12115 PF07963 Prokaryotic N-terminal methylation motif IHE41_12115 PF08334 Type II secretion system (T2SS), protein G IHE41_12120 PF00482 Type II secretion system (T2SS), protein F IHE41_12125 PF00437 Type II/IV secretion system protein IHE41_12130 PF03958 Bacterial type II/III secretion system short domain IHE41_12130 PF00263 Bacterial type II and III secretion system protein IHE41_12135 PF11356 Type II secretion system protein C IHE41_12140 PF01479 S4 domain IHE41_12145 PF01430 Hsp33 protein IHE41_12150 PF01293 Phosphoenolpyruvate carboxykinase IHE41_12160 PF00583 Acetyltransferase (GNAT) family IHE41_12160 PF09500 Putative thioesterase (yiiD_Cterm) IHE41_12165 PF02580 D-Tyr-tRNA(Tyr) deacylase IHE41_12170 PF03631 Virulence factor BrkB IHE41_12185 PF00679 Elongation factor G C-terminus IHE41_12185 PF03144 Elongation factor Tu domain 2 IHE41_12185 PF00009 Elongation factor Tu GTP binding domain IHE41_12190 PF03951 Glutamine synthetase, beta-Grasp domain IHE41_12190 PF00120 Glutamine synthetase, catalytic domain IHE41_12200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_12200 PF00512 His Kinase A (phospho-acceptor) domain IHE41_12200 PF00989 PAS fold IHE41_12205 PF00158 Sigma-54 interaction domain IHE41_12205 PF02954 Bacterial regulatory protein, Fis family IHE41_12205 PF00072 Response regulator receiver domain IHE41_12210 PF03707 Bacterial signalling protein N terminal repeat IHE41_12210 PF00563 EAL domain IHE41_12210 PF00990 Diguanylate cyclase, GGDEF domain IHE41_12215 PF00962 Adenosine/AMP deaminase IHE41_12220 PF06969 HemN C-terminal domain IHE41_12220 PF04055 Radical SAM superfamily IHE41_12225 PF10675 Protein of unknown function (DUF2489) IHE41_12230 PF04220 Der GTPase activator (YihI) IHE41_12240 PF00034 Cytochrome c IHE41_12245 PF01926 50S ribosome-binding GTPase IHE41_12250 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain IHE41_12250 PF00476 DNA polymerase family A IHE41_12250 PF01612 3'-5' exonuclease IHE41_12250 PF01367 5'-3' exonuclease, C-terminal SAM fold IHE41_12265 PF00490 Delta-aminolevulinic acid dehydratase IHE41_12270 PF01026 TatD related DNase IHE41_12275 PF00902 Sec-independent protein translocase protein (TatC) IHE41_12280 PF02416 mttA/Hcf106 family IHE41_12285 PF02416 mttA/Hcf106 family IHE41_12290 PF03109 ABC1 family IHE41_12295 PF02036 SCP-2 sterol transfer family IHE41_12300 PF01209 ubiE/COQ5 methyltransferase family IHE41_12305 PF02646 RmuC family IHE41_12315 PF00990 Diguanylate cyclase, GGDEF domain IHE41_12315 PF00563 EAL domain IHE41_12315 PF03707 Bacterial signalling protein N terminal repeat IHE41_12320 PF01594 AI-2E family transporter IHE41_12370 PF04972 BON domain IHE41_12375 PF01590 GAF domain IHE41_12375 PF02954 Bacterial regulatory protein, Fis family IHE41_12375 PF00158 Sigma-54 interaction domain IHE41_12385 PF10625 Universal stress protein B (UspB) IHE41_12390 PF00210 Ferritin-like domain IHE41_12395 PF00582 Universal stress protein family IHE41_12400 PF00892 EamA-like transporter family IHE41_12410 PF04445 Putative SAM-dependent methyltransferase IHE41_12415 PF00990 Diguanylate cyclase, GGDEF domain IHE41_12415 PF00563 EAL domain IHE41_12415 PF08448 PAS fold IHE41_12420 PF01037 Lrp/AsnC ligand binding domain IHE41_12425 PF01432 Peptidase family M3 IHE41_12430 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ IHE41_12435 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IHE41_12435 PF07992 Pyridine nucleotide-disulphide oxidoreductase IHE41_12500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_12500 PF03466 LysR substrate binding domain IHE41_12505 PF01048 Phosphorylase superfamily IHE41_12510 PF01081 KDPG and KHG aldolase IHE41_12515 PF02447 GntP family permease IHE41_12520 PF01202 Shikimate kinase IHE41_12525 PF00920 Dehydratase family IHE41_12530 PF00893 Small Multidrug Resistance protein IHE41_12535 PF00893 Small Multidrug Resistance protein IHE41_12540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_12540 PF03466 LysR substrate binding domain IHE41_12545 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family IHE41_12545 PF00356 Bacterial regulatory proteins, lacI family IHE41_12550 PF00069 Protein kinase domain IHE41_12580 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_12580 PF12911 N-terminal TM domain of oligopeptide transport permease C IHE41_12585 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_12590 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IHE41_12595 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IHE41_12595 PF00005 ABC transporter IHE41_12600 PF13419 Haloacid dehalogenase-like hydrolase IHE41_12630 PF13442 Cytochrome C oxidase, cbb3-type, subunit III IHE41_12635 PF13361 UvrD-like helicase C-terminal domain IHE41_12635 PF00580 UvrD/REP helicase N-terminal domain IHE41_12640 PF16295 Tetracyclin repressor-like, C-terminal domain IHE41_12640 PF00440 Bacterial regulatory proteins, tetR family IHE41_12645 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IHE41_12650 PF00873 AcrB/AcrD/AcrF family IHE41_12655 PF04380 Membrane fusogenic activity IHE41_12660 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain IHE41_12660 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain IHE41_12665 PF03466 LysR substrate binding domain IHE41_12665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_12700 PF00132 Bacterial transferase hexapeptide (six repeats) IHE41_12705 PF07369 Protein of unknown function (DUF1488) IHE41_12710 PF18317 Shikimate 5'-dehydrogenase C-terminal domain IHE41_12710 PF01488 Shikimate / quinate 5-dehydrogenase IHE41_12710 PF08501 Shikimate dehydrogenase substrate binding domain IHE41_12715 PF01218 Coproporphyrinogen III oxidase IHE41_12720 PF01300 Telomere recombination IHE41_12725 PF00731 AIR carboxylase IHE41_12730 PF02222 ATP-grasp domain IHE41_12730 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain IHE41_12735 PF01396 Topoisomerase DNA binding C4 zinc finger IHE41_12740 PF04361 Protein of unknown function (DUF494) IHE41_12745 PF02481 DNA recombination-mediator protein A IHE41_12745 PF17782 DprA winged helix domain IHE41_12755 PF01327 Polypeptide deformylase IHE41_12760 PF02911 Formyl transferase, C-terminal domain IHE41_12760 PF00551 Formyl transferase IHE41_12765 PF01029 NusB family IHE41_12765 PF01189 16S rRNA methyltransferase RsmB/F IHE41_12770 PF02080 TrkA-C domain IHE41_12770 PF02254 TrkA-N domain IHE41_12775 PF02386 Cation transport protein IHE41_12785 PF03006 Haemolysin-III related IHE41_12790 PF07070 SpoOM protein IHE41_12800 PF06288 Protein of unknown function (DUF1040) IHE41_12805 PF12801 4Fe-4S binding domain IHE41_12805 PF13746 4Fe-4S dicluster domain IHE41_12805 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase IHE41_12810 PF01636 Phosphotransferase enzyme family IHE41_12815 PF01323 DSBA-like thioredoxin domain IHE41_12820 PF01553 Acyltransferase IHE41_12865 PF00313 'Cold-shock' DNA-binding domain IHE41_12890 PF00313 'Cold-shock' DNA-binding domain IHE41_12900 PF01145 SPFH domain / Band 7 family IHE41_12900 PF12221 Bacterial membrane protein N terminal IHE41_12910 PF06965 Na+/H+ antiporter 1 IHE41_12915 PF00330 Aconitase family (aconitate hydratase) IHE41_12915 PF00694 Aconitase C-terminal domain IHE41_12920 PF00313 'Cold-shock' DNA-binding domain IHE41_12955 PF13335 Magnesium chelatase, subunit ChlI C-terminal IHE41_12955 PF01078 Magnesium chelatase, subunit ChlI IHE41_12960 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IHE41_12960 PF00205 Thiamine pyrophosphate enzyme, central domain IHE41_12960 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IHE41_12970 PF01063 Amino-transferase class IV IHE41_12975 PF00920 Dehydratase family IHE41_12980 PF00291 Pyridoxal-phosphate dependent enzyme IHE41_12980 PF00585 C-terminal regulatory domain of Threonine dehydratase IHE41_12985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_12985 PF03466 LysR substrate binding domain IHE41_12990 PF07690 Major Facilitator Superfamily IHE41_12995 PF00497 Bacterial extracellular solute-binding proteins, family 3 IHE41_13000 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_13005 PF12804 MobA-like NTP transferase domain IHE41_13005 PF00132 Bacterial transferase hexapeptide (six repeats) IHE41_13010 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain IHE41_13010 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain IHE41_13015 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IHE41_13015 PF02874 ATP synthase alpha/beta family, beta-barrel domain IHE41_13020 PF00231 ATP synthase IHE41_13025 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IHE41_13025 PF00306 ATP synthase alpha/beta chain, C terminal domain IHE41_13025 PF02874 ATP synthase alpha/beta family, beta-barrel domain IHE41_13030 PF00213 ATP synthase delta (OSCP) subunit IHE41_13035 PF00430 ATP synthase B/B' CF(0) IHE41_13040 PF00137 ATP synthase subunit C IHE41_13045 PF00119 ATP synthase A chain IHE41_13050 PF03899 ATP synthase I chain IHE41_13055 PF17762 HTH domain found in ParB protein IHE41_13055 PF02195 ParB-like nuclease domain IHE41_13060 PF13614 AAA domain IHE41_13065 PF02527 rRNA small subunit methyltransferase G IHE41_13070 PF01134 Glucose inhibited division protein A IHE41_13070 PF13932 GidA associated domain IHE41_13075 PF00258 Flavodoxin IHE41_13080 PF12631 MnmE helical domain IHE41_13080 PF10396 GTP-binding protein TrmE N-terminus IHE41_13080 PF01926 50S ribosome-binding GTPase IHE41_13085 PF02096 60Kd inner membrane protein IHE41_13085 PF14849 YidC periplasmic domain IHE41_13090 PF01809 Putative membrane protein insertion efficiency factor IHE41_13095 PF00825 Ribonuclease P IHE41_13100 PF00468 Ribosomal protein L34 IHE41_13105 PF00005 ABC transporter IHE41_13110 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_13115 PF00497 Bacterial extracellular solute-binding proteins, family 3 IHE41_13120 PF00308 Bacterial dnaA protein IHE41_13120 PF08299 Bacterial dnaA protein helix-turn-helix IHE41_13120 PF11638 DnaA N-terminal domain IHE41_13125 PF00712 DNA polymerase III beta subunit, N-terminal domain IHE41_13125 PF02767 DNA polymerase III beta subunit, central domain IHE41_13125 PF02768 DNA polymerase III beta subunit, C-terminal domain IHE41_13130 PF02463 RecF/RecN/SMC N terminal domain IHE41_13135 PF01751 Toprim domain IHE41_13135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_13135 PF18053 DNA gyrase B subunit insert domain IHE41_13135 PF00986 DNA gyrase B subunit, carboxyl terminus IHE41_13135 PF00204 DNA gyrase B IHE41_13145 PF00011 Hsp20/alpha crystallin family IHE41_13150 PF00155 Aminotransferase class I and II IHE41_13155 PF00128 Alpha amylase, catalytic domain IHE41_13160 PF05746 DALR anticodon binding domain IHE41_13160 PF02092 Glycyl-tRNA synthetase beta subunit IHE41_13165 PF02091 Glycyl-tRNA synthetase alpha subunit IHE41_13170 PF01169 Uncharacterized protein family UPF0016 IHE41_13180 PF01206 Sulfurtransferase TusA IHE41_13190 PF03466 LysR substrate binding domain IHE41_13190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_13195 PF08240 Alcohol dehydrogenase GroES-like domain IHE41_13195 PF00107 Zinc-binding dehydrogenase IHE41_13200 PF02803 Thiolase, C-terminal domain IHE41_13200 PF00108 Thiolase, N-terminal domain IHE41_13205 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IHE41_13205 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IHE41_13205 PF00378 Enoyl-CoA hydratase/isomerase IHE41_13210 PF01205 Uncharacterized protein family UPF0029 IHE41_13210 PF09186 Domain of unknown function (DUF1949) IHE41_13215 PF02386 Cation transport protein IHE41_13220 PF12724 Flavodoxin domain IHE41_13265 PF02537 CrcB-like protein, Camphor Resistance (CrcB) IHE41_13270 PF13667 ThiC-associated domain IHE41_13270 PF01964 Radical SAM ThiC family IHE41_13275 PF02581 Thiamine monophosphate synthase IHE41_13280 PF00899 ThiF family IHE41_13285 PF02597 ThiS family IHE41_13290 PF05690 Thiazole biosynthesis protein ThiG IHE41_13295 PF04055 Radical SAM superfamily IHE41_13295 PF06968 Biotin and Thiamin Synthesis associated domain IHE41_13300 PF01321 Creatinase/Prolidase N-terminal domain IHE41_13300 PF00557 Metallopeptidase family M24 IHE41_13300 PF00557 Metallopeptidase family M24 IHE41_13300 PF01321 Creatinase/Prolidase N-terminal domain IHE41_13305 PF03466 LysR substrate binding domain IHE41_13305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_13310 PF07690 Major Facilitator Superfamily IHE41_13330 PF05114 Protein of unknown function (DUF692) IHE41_13340 PF00580 UvrD/REP helicase N-terminal domain IHE41_13340 PF13361 UvrD-like helicase C-terminal domain IHE41_13350 PF01810 LysE type translocator IHE41_13360 PF00892 EamA-like transporter family IHE41_13365 PF09382 RQC domain IHE41_13365 PF00270 DEAD/DEAH box helicase IHE41_13365 PF00271 Helicase conserved C-terminal domain IHE41_13365 PF16124 RecQ zinc-binding IHE41_13365 PF00570 HRDC domain IHE41_13375 PF02592 Putative vitamin uptake transporter IHE41_13380 PF02541 Ppx/GppA phosphatase family IHE41_13385 PF00271 Helicase conserved C-terminal domain IHE41_13385 PF00270 DEAD/DEAH box helicase IHE41_13390 PF00085 Thioredoxin IHE41_13395 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IHE41_13395 PF07497 Rho termination factor, RNA-binding domain IHE41_13395 PF07498 Rho termination factor, N-terminal domain IHE41_13405 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase IHE41_13410 PF00111 2Fe-2S iron-sulfur cluster binding domain IHE41_13415 PF00175 Oxidoreductase NAD-binding domain IHE41_13455 PF07219 HemY protein N-terminus IHE41_13460 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase IHE41_13465 PF02602 Uroporphyrinogen-III synthase HemD IHE41_13470 PF03900 Porphobilinogen deaminase, C-terminal domain IHE41_13470 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain IHE41_13475 PF01295 Adenylate cyclase, class-I IHE41_13475 PF12633 Adenylate cyclase NT domain IHE41_13480 PF01491 Frataxin-like domain IHE41_13490 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain IHE41_13490 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain IHE41_13495 PF01678 Diaminopimelate epimerase IHE41_13500 PF04340 Protein of unknown function, DUF484 IHE41_13505 PF02899 Phage integrase, N-terminal SAM-like domain IHE41_13505 PF00589 Phage integrase family IHE41_13510 PF13419 Haloacid dehalogenase-like hydrolase IHE41_13515 PF00563 EAL domain IHE41_13515 PF08495 FIST N domain IHE41_13515 PF10442 FIST C domain IHE41_13515 PF00990 Diguanylate cyclase, GGDEF domain IHE41_13520 PF03942 DTW domain IHE41_13540 PF12146 Serine aminopeptidase, S33 IHE41_13545 PF01810 LysE type translocator IHE41_13550 PF00563 EAL domain IHE41_13550 PF08668 HDOD domain IHE41_13555 PF01022 Bacterial regulatory protein, arsR family IHE41_13560 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IHE41_13560 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IHE41_13610 PF01914 MarC family integral membrane protein IHE41_13625 PF00448 SRP54-type protein, GTPase domain IHE41_13625 PF02881 SRP54-type protein, helical bundle domain IHE41_13630 PF00005 ABC transporter IHE41_13635 PF18075 FtsX extracellular domain IHE41_13640 PF00140 Sigma-70 factor, region 1.2 IHE41_13640 PF04542 Sigma-70 region 2 IHE41_13640 PF04545 Sigma-70, region 4 IHE41_13645 PF00581 Rhodanese-like domain IHE41_13650 PF01694 Rhomboid family IHE41_13650 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease IHE41_13655 PF03748 Flagellar basal body-associated protein FliL IHE41_13660 PF04345 Chorismate lyase IHE41_13665 PF01040 UbiA prenyltransferase family IHE41_13670 PF01553 Acyltransferase IHE41_13675 PF01726 LexA DNA binding domain IHE41_13675 PF00717 Peptidase S24-like IHE41_13680 PF04072 Leucine carboxyl methyltransferase IHE41_13685 PF01554 MatE IHE41_13690 PF07992 Pyridine nucleotide-disulphide oxidoreductase IHE41_13690 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IHE41_13695 PF00440 Bacterial regulatory proteins, tetR family IHE41_13705 PF05958 tRNA (Uracil-5-)-methyltransferase IHE41_13710 PF07715 TonB-dependent Receptor Plug Domain IHE41_13710 PF00593 TonB dependent receptor IHE41_13720 PF01177 Asp/Glu/Hydantoin racemase IHE41_13785 PF13091 PLD-like domain IHE41_13795 PF01565 FAD binding domain IHE41_13795 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain IHE41_13800 PF02237 Biotin protein ligase C terminal domain IHE41_13800 PF03099 Biotin/lipoate A/B protein ligase family IHE41_13800 PF08279 HTH domain IHE41_13805 PF00485 Phosphoribulokinase / Uridine kinase family IHE41_13830 PF03143 Elongation factor Tu C-terminal domain IHE41_13830 PF00009 Elongation factor Tu GTP binding domain IHE41_13830 PF03144 Elongation factor Tu domain 2 IHE41_13835 PF00584 SecE/Sec61-gamma subunits of protein translocation complex IHE41_13840 PF00467 KOW motif IHE41_13840 PF02357 Transcription termination factor nusG IHE41_13845 PF03946 Ribosomal protein L11, N-terminal domain IHE41_13845 PF00298 Ribosomal protein L11, RNA binding domain IHE41_13850 PF00687 Ribosomal protein L1p/L10e family IHE41_13855 PF00466 Ribosomal protein L10 IHE41_13860 PF00542 Ribosomal protein L7/L12 C-terminal domain IHE41_13860 PF16320 Ribosomal protein L7/L12 dimerisation domain IHE41_13865 PF04563 RNA polymerase beta subunit IHE41_13865 PF04561 RNA polymerase Rpb2, domain 2 IHE41_13865 PF04565 RNA polymerase Rpb2, domain 3 IHE41_13865 PF10385 RNA polymerase beta subunit external 1 domain IHE41_13865 PF00562 RNA polymerase Rpb2, domain 6 IHE41_13865 PF04560 RNA polymerase Rpb2, domain 7 IHE41_13870 PF04998 RNA polymerase Rpb1, domain 5 IHE41_13870 PF05000 RNA polymerase Rpb1, domain 4 IHE41_13870 PF00623 RNA polymerase Rpb1, domain 2 IHE41_13870 PF04997 RNA polymerase Rpb1, domain 1 IHE41_13870 PF04983 RNA polymerase Rpb1, domain 3 IHE41_13875 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ IHE41_13880 PF00293 NUDIX domain IHE41_13880 PF09297 NADH pyrophosphatase zinc ribbon domain IHE41_13895 PF01208 Uroporphyrinogen decarboxylase (URO-D) IHE41_13900 PF03167 Uracil DNA glycosylase superfamily IHE41_13905 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IHE41_13910 PF04222 Protein of unknown function (DUF416) IHE41_13915 PF00571 CBS domain IHE41_13915 PF01595 Cyclin M transmembrane N-terminal domain IHE41_13920 PF00216 Bacterial DNA-binding protein IHE41_13930 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain IHE41_13930 PF02843 Phosphoribosylglycinamide synthetase, C domain IHE41_13930 PF02844 Phosphoribosylglycinamide synthetase, N domain IHE41_13935 PF01808 AICARFT/IMPCHase bienzyme IHE41_13935 PF02142 MGS-like domain IHE41_13940 PF13411 MerR HTH family regulatory protein IHE41_13945 PF00486 Transcriptional regulatory protein, C terminal IHE41_13945 PF18500 CadC C-terminal domain 1 IHE41_13950 PF13520 Amino acid permease IHE41_13955 PF01276 Orn/Lys/Arg decarboxylase, major domain IHE41_13955 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain IHE41_13955 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain IHE41_14010 PF00990 Diguanylate cyclase, GGDEF domain IHE41_14010 PF05230 MASE2 domain IHE41_14015 PF12848 ABC transporter IHE41_14015 PF00005 ABC transporter IHE41_14020 PF07690 Major Facilitator Superfamily IHE41_14025 PF02954 Bacterial regulatory protein, Fis family IHE41_14030 PF01207 Dihydrouridine synthase (Dus) IHE41_14040 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IHE41_14040 PF00289 Biotin carboxylase, N-terminal domain IHE41_14040 PF02785 Biotin carboxylase C-terminal domain IHE41_14045 PF00364 Biotin-requiring enzyme IHE41_14050 PF01220 Dehydroquinase class II IHE41_14055 PF00501 AMP-binding enzyme IHE41_14055 PF16177 Acetyl-coenzyme A synthetase N-terminus IHE41_14055 PF13193 AMP-binding enzyme C-terminal domain IHE41_14070 PF12832 MFS_1 like family IHE41_14075 PF00672 HAMP domain IHE41_14075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_14075 PF00512 His Kinase A (phospho-acceptor) domain IHE41_14075 PF01627 Hpt domain IHE41_14075 PF00072 Response regulator receiver domain IHE41_14080 PF10415 Fumarase C C-terminus IHE41_14080 PF00206 Lyase IHE41_14095 PF00474 Sodium:solute symporter family IHE41_14105 PF02080 TrkA-C domain IHE41_14105 PF00999 Sodium/hydrogen exchanger family IHE41_14105 PF03471 Transporter associated domain IHE41_14110 PF00196 Bacterial regulatory proteins, luxR family IHE41_14110 PF00072 Response regulator receiver domain IHE41_14115 PF11412 Disulphide bond corrector protein DsbC IHE41_14115 PF02683 Cytochrome C biogenesis protein transmembrane region IHE41_14120 PF03605 Anaerobic c4-dicarboxylate membrane transporter IHE41_14125 PF00206 Lyase IHE41_14125 PF10415 Fumarase C C-terminus IHE41_14130 PF04186 FxsA cytoplasmic membrane protein IHE41_14135 PF00588 SpoU rRNA Methylase family IHE41_14140 PF02777 Iron/manganese superoxide dismutases, C-terminal domain IHE41_14140 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain IHE41_14145 PF00512 His Kinase A (phospho-acceptor) domain IHE41_14145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_14145 PF00672 HAMP domain IHE41_14145 PF16527 Two-component sensor protein CpxA, periplasmic domain IHE41_14150 PF00072 Response regulator receiver domain IHE41_14150 PF00486 Transcriptional regulatory protein, C terminal IHE41_14155 PF07813 LTXXQ motif family protein IHE41_14160 PF01545 Cation efflux family IHE41_14160 PF16916 Dimerisation domain of Zinc Transporter IHE41_14165 PF00365 Phosphofructokinase IHE41_14170 PF01554 MatE IHE41_14175 PF00166 Chaperonin 10 Kd subunit IHE41_14180 PF00118 TCP-1/cpn60 chaperonin family IHE41_14190 PF02308 MgtC family IHE41_14195 PF00842 Alanine racemase, C-terminal domain IHE41_14195 PF01168 Alanine racemase, N-terminal domain IHE41_14200 PF04055 Radical SAM superfamily IHE41_14205 PF09285 Elongation factor P, C-terminal IHE41_14205 PF01132 Elongation factor P (EF-P) OB domain IHE41_14205 PF08207 Elongation factor P (EF-P) KOW-like domain IHE41_14215 PF02313 Fumarate reductase subunit D IHE41_14220 PF02300 Fumarate reductase subunit C IHE41_14225 PF13183 4Fe-4S dicluster domain IHE41_14225 PF13085 2Fe-2S iron-sulfur cluster binding domain IHE41_14230 PF02910 Fumarate reductase flavoprotein C-term IHE41_14230 PF00890 FAD binding domain IHE41_14235 PF00152 tRNA synthetases class II (D, K and N) IHE41_14245 PF08360 QacR-like protein, C-terminal region IHE41_14245 PF00440 Bacterial regulatory proteins, tetR family IHE41_14255 PF01551 Peptidase family M23 IHE41_14260 PF06426 Serine acetyltransferase, N-terminal IHE41_14260 PF00132 Bacterial transferase hexapeptide (six repeats) IHE41_14265 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IHE41_14265 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus IHE41_14270 PF02556 Preprotein translocase subunit SecB IHE41_14275 PF00581 Rhodanese-like domain IHE41_14280 PF01676 Metalloenzyme superfamily IHE41_14280 PF06415 BPG-independent PGAM N-terminus (iPGM_N) IHE41_14290 PF00672 HAMP domain IHE41_14290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IHE41_14295 PF00939 Sodium:sulfate symporter transmembrane region IHE41_14300 PF02666 Phosphatidylserine decarboxylase IHE41_14305 PF03193 RsgA GTPase IHE41_14310 PF00929 Exonuclease IHE41_14380 PF08331 Domain of unknown function (DUF1730) IHE41_14385 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE IHE41_14390 PF01520 N-acetylmuramoyl-L-alanine amidase IHE41_14395 PF08676 MutL C terminal dimerisation domain IHE41_14395 PF01119 DNA mismatch repair protein, C-terminal domain IHE41_14405 PF17209 Hfq protein IHE41_14410 PF13167 GTP-binding GTPase N-terminal IHE41_14410 PF01926 50S ribosome-binding GTPase IHE41_14410 PF16360 GTP-binding GTPase Middle Region IHE41_14415 PF01145 SPFH domain / Band 7 family IHE41_14415 PF12221 Bacterial membrane protein N terminal IHE41_14420 PF01145 SPFH domain / Band 7 family IHE41_14425 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) IHE41_14430 PF00709 Adenylosuccinate synthetase IHE41_14435 PF08238 Sel1 repeat IHE41_14440 PF00175 Oxidoreductase NAD-binding domain IHE41_14440 PF00042 Globin IHE41_14440 PF00970 Oxidoreductase FAD-binding domain IHE41_14445 PF02082 Transcriptional regulator IHE41_14450 PF00575 S1 RNA binding domain IHE41_14450 PF00773 RNB domain IHE41_14450 PF08461 Ribonuclease R winged-helix domain IHE41_14450 PF17876 Cold shock domain IHE41_14450 PF08206 Ribonuclease B OB domain IHE41_14455 PF00588 SpoU rRNA Methylase family IHE41_14455 PF08032 RNA 2'-O ribose methyltransferase substrate binding IHE41_14460 PF13419 Haloacid dehalogenase-like hydrolase IHE41_14465 PF00579 tRNA synthetases class I (W and Y) IHE41_14480 PF00117 Glutamine amidotransferase class-I IHE41_14485 PF00202 Aminotransferase class-III IHE41_14490 PF04958 Arginine N-succinyltransferase beta subunit IHE41_14495 PF00171 Aldehyde dehydrogenase family IHE41_14505 PF00027 Cyclic nucleotide-binding domain IHE41_14505 PF13545 Crp-like helix-turn-helix domain IHE41_14510 PF00485 Phosphoribulokinase / Uridine kinase family IHE41_14515 PF06794 Uncharacterised protein family (UPF0270) IHE41_14520 PF00561 alpha/beta hydrolase fold IHE41_14530 PF00005 ABC transporter IHE41_14530 PF12848 ABC transporter IHE41_14535 PF02525 Flavodoxin-like fold IHE41_14540 PF02254 TrkA-N domain IHE41_14540 PF00999 Sodium/hydrogen exchanger family IHE41_14550 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IHE41_14555 PF01112 Asparaginase IHE41_14560 PF04102 SlyX IHE41_14570 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IHE41_14570 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase IHE41_14575 PF13309 HTH domain IHE41_14575 PF08348 YheO-like PAS domain IHE41_14580 PF02635 DsrE/DsrF-like family IHE41_14585 PF02635 DsrE/DsrF-like family IHE41_14590 PF04077 DsrH like protein IHE41_14595 PF00164 Ribosomal protein S12/S23 IHE41_14600 PF00177 Ribosomal protein S7p/S5e IHE41_14605 PF00009 Elongation factor Tu GTP binding domain IHE41_14605 PF03144 Elongation factor Tu domain 2 IHE41_14605 PF03764 Elongation factor G, domain IV IHE41_14605 PF14492 Elongation Factor G, domain II IHE41_14605 PF00679 Elongation factor G C-terminus IHE41_14610 PF03143 Elongation factor Tu C-terminal domain IHE41_14610 PF00009 Elongation factor Tu GTP binding domain IHE41_14610 PF03144 Elongation factor Tu domain 2 IHE41_14615 PF04324 BFD-like [2Fe-2S] binding domain IHE41_14620 PF00210 Ferritin-like domain IHE41_14625 PF03949 Malic enzyme, NAD binding domain IHE41_14625 PF00390 Malic enzyme, N-terminal domain IHE41_14630 PF01340 Met Apo-repressor, MetJ IHE41_14635 PF01053 Cys/Met metabolism PLP-dependent enzyme IHE41_14640 PF00696 Amino acid kinase family IHE41_14640 PF00742 Homoserine dehydrogenase IHE41_14640 PF03447 Homoserine dehydrogenase, NAD binding domain IHE41_14645 PF02219 Methylenetetrahydrofolate reductase IHE41_14655 PF00311 Phosphoenolpyruvate carboxylase IHE41_14660 PF07687 Peptidase dimerisation domain IHE41_14660 PF01546 Peptidase family M20/M25/M40 IHE41_14665 PF02774 Semialdehyde dehydrogenase, dimerisation domain IHE41_14665 PF01118 Semialdehyde dehydrogenase, NAD binding domain IHE41_14670 PF00696 Amino acid kinase family IHE41_14675 PF00764 Arginosuccinate synthase IHE41_14680 PF14698 Argininosuccinate lyase C-terminal IHE41_14680 PF00583 Acetyltransferase (GNAT) family IHE41_14680 PF00206 Lyase IHE41_14690 PF00462 Glutaredoxin IHE41_14690 PF08534 Redoxin IHE41_14695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_14695 PF03466 LysR substrate binding domain IHE41_14700 PF17092 Penicillin-binding protein OB-like domain IHE41_14700 PF00912 Transglycosylase IHE41_14700 PF00905 Penicillin binding protein transpeptidase domain IHE41_14710 PF05137 Fimbrial assembly protein (PilN) IHE41_14720 PF04351 Pilus assembly protein, PilP IHE41_14725 PF03958 Bacterial type II/III secretion system short domain IHE41_14725 PF00263 Bacterial type II and III secretion system protein IHE41_14725 PF11741 AMIN domain IHE41_14725 PF07660 Secretin and TonB N terminus short domain IHE41_14730 PF01202 Shikimate kinase IHE41_14735 PF01761 3-dehydroquinate synthase IHE41_14745 PF02086 D12 class N6 adenine-specific DNA methyltransferase IHE41_14750 PF00834 Ribulose-phosphate 3 epimerase family IHE41_14755 PF01250 Ribosomal protein S6 IHE41_14760 PF00436 Single-strand binding protein family IHE41_14765 PF01084 Ribosomal protein S18 IHE41_14770 PF03948 Ribosomal protein L9, C-terminal domain IHE41_14770 PF01281 Ribosomal protein L9, N-terminal domain IHE41_14780 PF00772 DnaB-like helicase N terminal domain IHE41_14780 PF03796 DnaB-like helicase C terminal domain IHE41_14785 PF00842 Alanine racemase, C-terminal domain IHE41_14785 PF01168 Alanine racemase, N-terminal domain IHE41_14795 PF01894 Uncharacterised protein family UPF0047 IHE41_14800 PF00342 Phosphoglucose isomerase IHE41_14810 PF01475 Ferric uptake regulator family IHE41_14815 PF01207 Dihydrouridine synthase (Dus) IHE41_14835 PF00175 Oxidoreductase NAD-binding domain IHE41_14835 PF00667 FAD binding domain IHE41_14835 PF00258 Flavodoxin IHE41_14840 PF01077 Nitrite and sulphite reductase 4Fe-4S domain IHE41_14840 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IHE41_14845 PF01507 Phosphoadenosine phosphosulfate reductase family IHE41_14905 PF00999 Sodium/hydrogen exchanger family IHE41_14910 PF02574 Homocysteine S-methyltransferase IHE41_14910 PF02310 B12 binding domain IHE41_14910 PF02607 B12 binding domain IHE41_14910 PF02965 Vitamin B12 dependent methionine synthase, activation domain IHE41_14910 PF00809 Pterin binding enzyme IHE41_14915 PF00696 Amino acid kinase family IHE41_14915 PF01842 ACT domain IHE41_14920 PF00266 Aminotransferase class-V IHE41_14930 PF17760 UvrA interaction domain IHE41_14930 PF17755 UvrA DNA-binding domain IHE41_14930 PF00005 ABC transporter IHE41_14935 PF00483 Nucleotidyl transferase IHE41_14940 PF00196 Bacterial regulatory proteins, luxR family IHE41_14945 PF00436 Single-strand binding protein family IHE41_14950 PF17157 Gammaproteobacterial periplasmic sensor domain IHE41_14950 PF00563 EAL domain IHE41_14950 PF00990 Diguanylate cyclase, GGDEF domain IHE41_14970 PF07660 Secretin and TonB N terminus short domain IHE41_14970 PF03958 Bacterial type II/III secretion system short domain IHE41_14970 PF11741 AMIN domain IHE41_14970 PF00263 Bacterial type II and III secretion system protein IHE41_14975 PF13401 AAA domain IHE41_14975 PF01471 Putative peptidoglycan binding domain IHE41_14985 PF00437 Type II/IV secretion system protein IHE41_14985 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain IHE41_14990 PF00482 Type II secretion system (T2SS), protein F IHE41_15000 PF07963 Prokaryotic N-terminal methylation motif IHE41_15040 PF04085 rod shape-determining protein MreC IHE41_15045 PF04093 rod shape-determining protein MreD IHE41_15050 PF02545 Maf-like protein IHE41_15055 PF10150 Ribonuclease E/G family IHE41_15055 PF00575 S1 RNA binding domain IHE41_15060 PF13502 AsmA-like C-terminal region IHE41_15060 PF13116 Protein of unknown function IHE41_15065 PF00795 Carbon-nitrogen hydrolase IHE41_15070 PF01523 Putative modulator of DNA gyrase IHE41_15075 PF02562 PhoH-like protein IHE41_15075 PF13638 PIN domain IHE41_15080 PF00271 Helicase conserved C-terminal domain IHE41_15080 PF12137 RNA polymerase recycling family C-terminal IHE41_15080 PF00176 SNF2 family N-terminal domain IHE41_15080 PF18339 RapA N-terminal Tudor like domain 1 IHE41_15080 PF18337 RapA N-terminal Tudor like domain IHE41_15090 PF00849 RNA pseudouridylate synthase IHE41_15095 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IHE41_15095 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IHE41_15100 PF04751 Protein of unknown function (DUF615) IHE41_15105 PF01523 Putative modulator of DNA gyrase IHE41_15110 PF00571 CBS domain IHE41_15110 PF03448 MgtE intracellular N domain IHE41_15110 PF01769 Divalent cation transporter IHE41_15115 PF00381 PTS HPr component phosphorylation site IHE41_15120 PF03668 P-loop ATPase protein family IHE41_15125 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IHE41_15130 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein IHE41_15135 PF04963 Sigma-54 factor, core binding domain IHE41_15135 PF04552 Sigma-54, DNA binding domain IHE41_15135 PF00309 Sigma-54 factor, Activator interacting domain (AID) IHE41_15140 PF12399 Branched-chain amino acid ATP-binding cassette transporter IHE41_15140 PF00005 ABC transporter IHE41_15145 PF03968 OstA-like protein IHE41_15155 PF00571 CBS domain IHE41_15155 PF01380 SIS domain IHE41_15160 PF01699 Sodium/calcium exchanger protein IHE41_15165 PF00005 ABC transporter IHE41_15170 PF02405 Permease MlaE IHE41_15175 PF02470 MlaD protein IHE41_15180 PF05494 MlaC protein IHE41_15190 PF01722 BolA-like protein IHE41_15195 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) IHE41_15200 PF01553 Acyltransferase IHE41_15205 PF01042 Endoribonuclease L-PSP IHE41_15210 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain IHE41_15210 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain IHE41_15215 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IHE41_15215 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IHE41_15225 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IHE41_15225 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IHE41_15235 PF06877 Regulator of ribonuclease activity B IHE41_15245 PF00583 Acetyltransferase (GNAT) family IHE41_15255 PF08264 Anticodon-binding domain of tRNA IHE41_15255 PF00133 tRNA synthetases class I (I, L, M and V) IHE41_15255 PF10458 Valyl tRNA synthetase tRNA binding arm IHE41_15260 PF04364 DNA polymerase III chi subunit, HolC IHE41_15265 PF02789 Cytosol aminopeptidase family, N-terminal domain IHE41_15265 PF00883 Cytosol aminopeptidase family, catalytic domain IHE41_15270 PF03739 Lipopolysaccharide export system permease LptF/LptG IHE41_15275 PF03739 Lipopolysaccharide export system permease LptF/LptG IHE41_15285 PF10011 Predicted membrane protein (DUF2254) IHE41_15290 PF00106 short chain dehydrogenase IHE41_15300 PF01522 Polysaccharide deacetylase IHE41_15305 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit IHE41_15310 PF02378 Phosphotransferase system, EIIC IHE41_15315 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit IHE41_15320 PF02056 Family 4 glycosyl hydrolase IHE41_15320 PF11975 Family 4 glycosyl hydrolase C-terminal domain IHE41_15325 PF04794 YdjC-like protein IHE41_15330 PF00356 Bacterial regulatory proteins, lacI family IHE41_15330 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family IHE41_15335 PF00072 Response regulator receiver domain IHE41_15380 PF00171 Aldehyde dehydrogenase family IHE41_15410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IHE41_15410 PF17200 Single Cache domain 2 IHE41_15410 PF00672 HAMP domain IHE41_15450 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain IHE41_15450 PF01464 Transglycosylase SLT domain IHE41_15455 PF04362 Bacterial Fe(2+) trafficking IHE41_15460 PF00730 HhH-GPD superfamily base excision DNA repair protein IHE41_15460 PF14815 NUDIX domain IHE41_15460 PF00633 Helix-hairpin-helix motif IHE41_15465 PF02390 Putative methyltransferase IHE41_15470 PF02086 D12 class N6 adenine-specific DNA methyltransferase IHE41_15475 PF04960 Glutaminase IHE41_15480 PF04055 Radical SAM superfamily IHE41_15480 PF06969 HemN C-terminal domain IHE41_15485 PF01725 Ham1 family IHE41_15495 PF02594 Uncharacterised ACR, YggU family COG1872 IHE41_15500 PF02325 YGGT family IHE41_15505 PF14748 Pyrroline-5-carboxylate reductase dimerisation IHE41_15505 PF03807 NADP oxidoreductase coenzyme F420-dependent IHE41_15510 PF01168 Alanine racemase, N-terminal domain IHE41_15515 PF00437 Type II/IV secretion system protein IHE41_15520 PF00437 Type II/IV secretion system protein IHE41_15525 PF03652 Holliday junction resolvase IHE41_15530 PF02622 Uncharacterized ACR, COG1678 IHE41_15535 PF02951 Prokaryotic glutathione synthetase, N-terminal domain IHE41_15535 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain IHE41_15540 PF04452 RNA methyltransferase IHE41_15545 PF04231 Endonuclease I IHE41_15550 PF10263 SprT-like family IHE41_15550 PF17283 SprT-like zinc ribbon domain IHE41_15560 PF00438 S-adenosylmethionine synthetase, N-terminal domain IHE41_15560 PF02773 S-adenosylmethionine synthetase, C-terminal domain IHE41_15560 PF02772 S-adenosylmethionine synthetase, central domain IHE41_15565 PF00456 Transketolase, thiamine diphosphate binding domain IHE41_15565 PF02780 Transketolase, C-terminal domain IHE41_15565 PF02779 Transketolase, pyrimidine binding domain IHE41_15570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_15570 PF03466 LysR substrate binding domain IHE41_15575 PF07715 TonB-dependent Receptor Plug Domain IHE41_15575 PF00593 TonB dependent receptor IHE41_15580 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IHE41_15580 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IHE41_15585 PF00162 Phosphoglycerate kinase IHE41_15590 PF01116 Fructose-bisphosphate aldolase class-II IHE41_15595 PF00924 Mechanosensitive ion channel IHE41_15595 PF05552 Conserved TM helix IHE41_15600 PF04073 Aminoacyl-tRNA editing domain IHE41_15605 PF01810 LysE type translocator IHE41_15610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_15610 PF03466 LysR substrate binding domain IHE41_15615 PF04402 Protein of unknown function (DUF541) IHE41_15620 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IHE41_15620 PF01842 ACT domain IHE41_15620 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IHE41_15625 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) IHE41_15630 PF01812 5-formyltetrahydrofolate cyclo-ligase family IHE41_15640 PF05164 Cell division protein ZapA IHE41_15645 PF03695 Uncharacterised protein family (UPF0149) IHE41_15650 PF01494 FAD binding domain IHE41_15655 PF01494 FAD binding domain IHE41_15670 PF01571 Aminomethyltransferase folate-binding domain IHE41_15675 PF03937 Flavinator of succinate dehydrogenase IHE41_15680 PF00890 FAD binding domain IHE41_15680 PF02910 Fumarate reductase flavoprotein C-term IHE41_15685 PF08281 Sigma-70, region 4 IHE41_15685 PF04542 Sigma-70 region 2 IHE41_15690 PF03873 Anti sigma-E protein RseA, C-terminal domain IHE41_15690 PF03872 Anti sigma-E protein RseA, N-terminal domain IHE41_15695 PF03888 MucB/RseB N-terminal domain IHE41_15695 PF17188 MucB/RseB C-terminal domain IHE41_15705 PF00679 Elongation factor G C-terminus IHE41_15705 PF00009 Elongation factor Tu GTP binding domain IHE41_15705 PF03144 Elongation factor Tu domain 2 IHE41_15705 PF06421 GTP-binding protein LepA C-terminus IHE41_15710 PF10502 Signal peptidase, peptidase S26 IHE41_15715 PF00035 Double-stranded RNA binding motif IHE41_15715 PF14622 Ribonuclease-III-like IHE41_15720 PF07650 KH domain IHE41_15720 PF01926 50S ribosome-binding GTPase IHE41_15725 PF02565 Recombination protein O C terminal IHE41_15725 PF11967 Recombination protein O N terminal IHE41_15730 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ IHE41_15735 PF01648 4'-phosphopantetheinyl transferase superfamily IHE41_15740 PF00072 Response regulator receiver domain IHE41_15740 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IHE41_15740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_15740 PF01627 Hpt domain IHE41_15740 PF00512 His Kinase A (phospho-acceptor) domain IHE41_15740 PF00672 HAMP domain IHE41_15745 PF05958 tRNA (Uracil-5-)-methyltransferase IHE41_15745 PF01938 TRAM domain IHE41_15750 PF13291 ACT domain IHE41_15750 PF04607 Region found in RelA / SpoT proteins IHE41_15750 PF02824 TGS domain IHE41_15755 PF03819 MazG nucleotide pyrophosphohydrolase domain IHE41_15760 PF06418 CTP synthase N-terminus IHE41_15760 PF00117 Glutamine amidotransferase class-I IHE41_15765 PF03952 Enolase, N-terminal domain IHE41_15765 PF00113 Enolase, C-terminal TIM barrel domain IHE41_15770 PF04977 Septum formation initiator IHE41_15775 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase IHE41_15780 PF02542 YgbB family IHE41_15785 PF01142 tRNA pseudouridine synthase D (TruD) IHE41_15790 PF01975 Survival protein SurE IHE41_15800 PF01476 LysM domain IHE41_15800 PF01551 Peptidase family M23 IHE41_15805 PF04542 Sigma-70 region 2 IHE41_15805 PF00140 Sigma-70 factor, region 1.2 IHE41_15805 PF04539 Sigma-70 region 3 IHE41_15805 PF04545 Sigma-70, region 4 IHE41_15810 PF01624 MutS domain I IHE41_15810 PF05188 MutS domain II IHE41_15810 PF05192 MutS domain III IHE41_15810 PF05190 MutS family domain IV IHE41_15810 PF00488 MutS domain V IHE41_15815 PF02464 Competence-damaged protein IHE41_15865 PF04013 Putative SAM-dependent RNA methyltransferase IHE41_15870 PF01523 Putative modulator of DNA gyrase IHE41_15875 PF01523 Putative modulator of DNA gyrase IHE41_15880 PF08543 Phosphomethylpyrimidine kinase IHE41_15885 PF00005 ABC transporter IHE41_15890 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_15895 PF09084 NMT1/THI5 like IHE41_15900 PF03070 TENA/THI-4/PQQC family IHE41_15905 PF02110 Hydroxyethylthiazole kinase family IHE41_15910 PF02581 Thiamine monophosphate synthase IHE41_15920 PF00384 Molybdopterin oxidoreductase IHE41_15920 PF18364 Molybdopterin oxidoreductase N-terminal domain IHE41_15920 PF01568 Molydopterin dinucleotide binding domain IHE41_15925 PF03264 NapC/NirT cytochrome c family, N-terminal region IHE41_15950 PF00583 Acetyltransferase (GNAT) family IHE41_15970 PF00155 Aminotransferase class I and II IHE41_15970 PF00392 Bacterial regulatory proteins, gntR family IHE41_15975 PF02595 Glycerate kinase family IHE41_15980 PF02447 GntP family permease IHE41_15985 PF17853 GGDEF-like domain IHE41_15985 PF13556 PucR C-terminal helix-turn-helix domain IHE41_15985 PF05651 Putative sugar diacid recognition IHE41_16010 PF13419 Haloacid dehalogenase-like hydrolase IHE41_16025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_16025 PF03466 LysR substrate binding domain IHE41_16035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_16035 PF03466 LysR substrate binding domain IHE41_16040 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IHE41_16045 PF01661 Macro domain IHE41_16050 PF01204 Trehalase IHE41_16060 PF12706 Beta-lactamase superfamily domain IHE41_16070 PF07690 Major Facilitator Superfamily IHE41_16075 PF13533 Biotin-lipoyl like IHE41_16080 PF03922 OmpW family IHE41_16085 PF13599 Pentapeptide repeats (9 copies) IHE41_16100 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading IHE41_16100 PF18416 N-acetylglucosamine binding protein domain 2 IHE41_16105 PF01037 Lrp/AsnC ligand binding domain IHE41_16110 PF01810 LysE type translocator IHE41_16115 PF04954 Siderophore-interacting protein IHE41_16115 PF08021 Siderophore-interacting FAD-binding domain IHE41_16120 PF14583 Oligogalacturonate lyase IHE41_16125 PF00474 Sodium:solute symporter family IHE41_16130 PF13229 Right handed beta helix region IHE41_16145 PF01081 KDPG and KHG aldolase IHE41_16150 PF00294 pfkB family carbohydrate kinase IHE41_16165 PF07883 Cupin domain IHE41_16170 PF10688 Bacterial inner membrane protein IHE41_16180 PF09339 IclR helix-turn-helix domain IHE41_16180 PF01614 Bacterial transcriptional regulator IHE41_16195 PF03466 LysR substrate binding domain IHE41_16195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_16200 PF00797 N-acetyltransferase IHE41_16205 PF00107 Zinc-binding dehydrogenase IHE41_16205 PF08240 Alcohol dehydrogenase GroES-like domain IHE41_16210 PF00756 Putative esterase IHE41_16220 PF00990 Diguanylate cyclase, GGDEF domain IHE41_16220 PF17152 Periplasmic sensor domain IHE41_16235 PF03466 LysR substrate binding domain IHE41_16235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_16250 PF00849 RNA pseudouridylate synthase IHE41_16255 PF01554 MatE IHE41_16260 PF00563 EAL domain IHE41_16260 PF00990 Diguanylate cyclase, GGDEF domain IHE41_16270 PF06865 Pyrimidine/purine nucleoside phosphorylase IHE41_16280 PF08329 Chitinase A, N-terminal domain IHE41_16280 PF00704 Glycosyl hydrolases family 18 IHE41_16300 PF03600 Citrate transporter IHE41_16310 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 IHE41_16320 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain IHE41_16320 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain IHE41_16325 PF06029 AlkA N-terminal domain IHE41_16325 PF00730 HhH-GPD superfamily base excision DNA repair protein IHE41_16335 PF07681 DoxX IHE41_16340 PF17954 Quercetinase C-terminal cupin domain IHE41_16340 PF02678 Pirin IHE41_16345 PF03466 LysR substrate binding domain IHE41_16345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_16360 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase IHE41_16370 PF03616 Sodium/glutamate symporter IHE41_16375 PF00392 Bacterial regulatory proteins, gntR family IHE41_16375 PF00155 Aminotransferase class I and II IHE41_16380 PF00005 ABC transporter IHE41_16390 PF03616 Sodium/glutamate symporter IHE41_16395 PF00132 Bacterial transferase hexapeptide (six repeats) IHE41_16410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IHE41_16410 PF17200 Single Cache domain 2 IHE41_16410 PF00672 HAMP domain IHE41_16415 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD IHE41_16425 PF00072 Response regulator receiver domain IHE41_16425 PF04397 LytTr DNA-binding domain IHE41_16430 PF07694 5TMR of 5TMR-LYT IHE41_16430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_16430 PF13492 GAF domain IHE41_16430 PF06580 Histidine kinase IHE41_16450 PF00005 ABC transporter IHE41_16460 PF01098 Cell cycle protein IHE41_16465 PF01709 Transcriptional regulator IHE41_16475 PF00072 Response regulator receiver domain IHE41_16475 PF01627 Hpt domain IHE41_16475 PF00512 His Kinase A (phospho-acceptor) domain IHE41_16475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_16475 PF00672 HAMP domain IHE41_16475 PF17149 Periplasmic sensor domain found in signal transduction proteins IHE41_16485 PF08719 Domain of unknown function (DUF1768) IHE41_16485 PF00925 GTP cyclohydrolase II IHE41_16495 PF00005 ABC transporter IHE41_16495 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IHE41_16500 PF00005 ABC transporter IHE41_16500 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IHE41_16515 PF18607 ParA helix turn helix domain IHE41_16515 PF13614 AAA domain IHE41_16520 PF02195 ParB-like nuclease domain IHE41_16520 PF08775 ParB family IHE41_16525 PF13718 GNAT acetyltransferase 2 IHE41_16525 PF05127 Helicase IHE41_16535 PF00132 Bacterial transferase hexapeptide (six repeats) IHE41_16540 PF03466 LysR substrate binding domain IHE41_16540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_16545 PF03575 Peptidase family S51 IHE41_16550 PF00267 Gram-negative porin IHE41_16555 PF00367 phosphotransferase system, EIIB IHE41_16555 PF02378 Phosphotransferase system, EIIC IHE41_16560 PF01380 SIS domain IHE41_16565 PF01380 SIS domain IHE41_16565 PF01418 Helix-turn-helix domain, rpiR family IHE41_16570 PF00246 Zinc carboxypeptidase IHE41_16575 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IHE41_16580 PF03358 NADPH-dependent FMN reductase IHE41_16590 PF00664 ABC transporter transmembrane region IHE41_16590 PF00005 ABC transporter IHE41_16590 PF03412 Peptidase C39 family IHE41_16605 PF00529 HlyD membrane-fusion protein of T1SS IHE41_16610 PF00158 Sigma-54 interaction domain IHE41_16610 PF02954 Bacterial regulatory protein, Fis family IHE41_16610 PF00072 Response regulator receiver domain IHE41_16615 PF00512 His Kinase A (phospho-acceptor) domain IHE41_16615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_16615 PF02743 Cache domain IHE41_16620 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region IHE41_16620 PF01243 Pyridoxamine 5'-phosphate oxidase IHE41_16630 PF12833 Helix-turn-helix domain IHE41_16635 PF01619 Proline dehydrogenase IHE41_16635 PF00171 Aldehyde dehydrogenase family IHE41_16635 PF14850 DNA-binding domain of Proline dehydrogenase IHE41_16635 PF18327 Proline utilization A proline dehydrogenase N-terminal domain IHE41_16645 PF00474 Sodium:solute symporter family IHE41_16680 PF01037 Lrp/AsnC ligand binding domain IHE41_16690 PF00664 ABC transporter transmembrane region IHE41_16690 PF00005 ABC transporter IHE41_16700 PF06719 AraC-type transcriptional regulator N-terminus IHE41_16700 PF12833 Helix-turn-helix domain IHE41_16715 PF00271 Helicase conserved C-terminal domain IHE41_16715 PF00270 DEAD/DEAH box helicase IHE41_16720 PF03475 3-alpha domain IHE41_16720 PF03473 MOSC domain IHE41_16735 PF11975 Family 4 glycosyl hydrolase C-terminal domain IHE41_16735 PF02056 Family 4 glycosyl hydrolase IHE41_16740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_16740 PF03466 LysR substrate binding domain IHE41_16745 PF00672 HAMP domain IHE41_16745 PF02743 Cache domain IHE41_16745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IHE41_16755 PF08281 Sigma-70, region 4 IHE41_16755 PF04542 Sigma-70 region 2 IHE41_16760 PF12833 Helix-turn-helix domain IHE41_16760 PF01965 DJ-1/PfpI family IHE41_16765 PF03466 LysR substrate binding domain IHE41_16765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_16780 PF07992 Pyridine nucleotide-disulphide oxidoreductase IHE41_16780 PF13192 Thioredoxin domain IHE41_16785 PF00578 AhpC/TSA family IHE41_16785 PF10417 C-terminal domain of 1-Cys peroxiredoxin IHE41_16790 PF01047 MarR family IHE41_16795 PF02566 OsmC-like protein IHE41_16815 PF00535 Glycosyl transferase family 2 IHE41_16825 PF08241 Methyltransferase domain IHE41_16835 PF01136 Peptidase family U32 IHE41_16845 PF00367 phosphotransferase system, EIIB IHE41_16845 PF02378 Phosphotransferase system, EIIC IHE41_16850 PF00072 Response regulator receiver domain IHE41_16850 PF00486 Transcriptional regulatory protein, C terminal IHE41_16855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_16855 PF00512 His Kinase A (phospho-acceptor) domain IHE41_16855 PF08521 Two-component sensor kinase N-terminal IHE41_16860 PF01547 Bacterial extracellular solute-binding protein IHE41_16865 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain IHE41_16865 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain IHE41_16870 PF06276 Ferric iron reductase FhuF-like transporter IHE41_16870 PF04183 IucA / IucC family IHE41_16880 PF04183 IucA / IucC family IHE41_16880 PF06276 Ferric iron reductase FhuF-like transporter IHE41_16885 PF02655 ATP-grasp domain IHE41_16885 PF00206 Lyase IHE41_16890 PF07715 TonB-dependent Receptor Plug Domain IHE41_16890 PF00593 TonB dependent receptor IHE41_16895 PF00593 TonB dependent receptor IHE41_16895 PF07660 Secretin and TonB N terminus short domain IHE41_16895 PF07715 TonB-dependent Receptor Plug Domain IHE41_16900 PF01497 Periplasmic binding protein IHE41_16905 PF01032 FecCD transport family IHE41_16910 PF01032 FecCD transport family IHE41_16915 PF00005 ABC transporter IHE41_16920 PF00672 HAMP domain IHE41_16920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IHE41_16920 PF17200 Single Cache domain 2 IHE41_16925 PF05193 Peptidase M16 inactive domain IHE41_16925 PF00675 Insulinase (Peptidase family M16) IHE41_16935 PF01551 Peptidase family M23 IHE41_16935 PF04225 Opacity-associated protein A LysM-like domain IHE41_16945 PF07690 Major Facilitator Superfamily IHE41_16955 PF00128 Alpha amylase, catalytic domain IHE41_16955 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) IHE41_16960 PF02264 LamB porin IHE41_16975 PF00128 Alpha amylase, catalytic domain IHE41_16975 PF02903 Alpha amylase, N-terminal ig-like domain IHE41_16975 PF16657 Maltogenic Amylase, C-terminal domain IHE41_16980 PF04231 Endonuclease I IHE41_16985 PF11852 Domain of unknown function (DUF3372) IHE41_16985 PF18494 Pullulanase Ins domain IHE41_16985 PF17967 Pullulanase N2 domain IHE41_16985 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) IHE41_16985 PF03714 Bacterial pullanase-associated domain IHE41_17000 PF01276 Orn/Lys/Arg decarboxylase, major domain IHE41_17000 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain IHE41_17000 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain IHE41_17005 PF13520 Amino acid permease IHE41_17015 PF08543 Phosphomethylpyrimidine kinase IHE41_17025 PF00375 Sodium:dicarboxylate symporter family IHE41_17030 PF03193 RsgA GTPase IHE41_17035 PF00367 phosphotransferase system, EIIB IHE41_17035 PF02378 Phosphotransferase system, EIIC IHE41_17045 PF02630 SCO1/SenC IHE41_17060 PF00196 Bacterial regulatory proteins, luxR family IHE41_17060 PF17874 MalT-like TPR region IHE41_17065 PF00343 Carbohydrate phosphorylase IHE41_17070 PF02446 4-alpha-glucanotransferase IHE41_17075 PF00128 Alpha amylase, catalytic domain IHE41_17075 PF02806 Alpha amylase, C-terminal all-beta domain IHE41_17075 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) IHE41_17080 PF00912 Transglycosylase IHE41_17085 PF00128 Alpha amylase, catalytic domain IHE41_17100 PF07670 Nucleoside recognition IHE41_17105 PF07670 Nucleoside recognition IHE41_17110 PF01546 Peptidase family M20/M25/M40 IHE41_17110 PF07687 Peptidase dimerisation domain IHE41_17115 PF06803 Protein of unknown function (DUF1232) IHE41_17120 PF00375 Sodium:dicarboxylate symporter family IHE41_17130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_17130 PF03466 LysR substrate binding domain IHE41_17135 PF08803 Putative mono-oxygenase ydhR IHE41_17145 PF13614 AAA domain IHE41_17145 PF13807 G-rich domain on putative tyrosine kinase IHE41_17145 PF02706 Chain length determinant protein IHE41_17150 PF01451 Low molecular weight phosphotyrosine protein phosphatase IHE41_17155 PF10531 SLBB domain IHE41_17155 PF02563 Polysaccharide biosynthesis/export protein IHE41_17155 PF18412 Outer-membrane lipoprotein Wza C-terminal domain IHE41_17160 PF00881 Nitroreductase family IHE41_17165 PF01914 MarC family integral membrane protein IHE41_17170 PF01734 Patatin-like phospholipase IHE41_17175 PF18416 N-acetylglucosamine binding protein domain 2 IHE41_17175 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading IHE41_17180 PF00581 Rhodanese-like domain IHE41_17180 PF17773 UPF0176 acylphosphatase like domain IHE41_17185 PF13673 Acetyltransferase (GNAT) domain IHE41_17190 PF00561 alpha/beta hydrolase fold IHE41_17195 PF07943 Penicillin-binding protein 5, C-terminal domain IHE41_17195 PF00768 D-alanyl-D-alanine carboxypeptidase IHE41_17200 PF00686 Starch binding domain IHE41_17200 PF00128 Alpha amylase, catalytic domain IHE41_17205 PF12833 Helix-turn-helix domain IHE41_17205 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term IHE41_17210 PF00881 Nitroreductase family IHE41_17220 PF03466 LysR substrate binding domain IHE41_17220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_17225 PF09905 DNA-binding protein VF530 IHE41_17235 PF00175 Oxidoreductase NAD-binding domain IHE41_17235 PF00970 Oxidoreductase FAD-binding domain IHE41_17245 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) IHE41_17250 PF01594 AI-2E family transporter IHE41_17260 PF13533 Biotin-lipoyl like IHE41_17280 PF00892 EamA-like transporter family IHE41_17285 PF03466 LysR substrate binding domain IHE41_17285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_17305 PF00583 Acetyltransferase (GNAT) family IHE41_17315 PF00923 Transaldolase/Fructose-6-phosphate aldolase IHE41_17320 PF04055 Radical SAM superfamily IHE41_17325 PF01228 Glycine radical IHE41_17325 PF02901 Pyruvate formate lyase-like IHE41_17345 PF08000 Bacterial PH domain IHE41_17350 PF00691 OmpA family IHE41_17350 PF13677 Membrane MotB of proton-channel complex MotA/MotB IHE41_17355 PF01618 MotA/TolQ/ExbB proton channel family IHE41_17360 PF04545 Sigma-70, region 4 IHE41_17360 PF04542 Sigma-70 region 2 IHE41_17365 PF03748 Flagellar basal body-associated protein FliL IHE41_17380 PF02561 Flagellar protein FliS IHE41_17385 PF07196 Flagellin hook IN motif IHE41_17385 PF07195 Flagellar hook-associated protein 2 C-terminus IHE41_17385 PF02465 Flagellar hook-associated protein 2 N-terminus IHE41_17395 PF00700 Bacterial flagellin C-terminal helical region IHE41_17395 PF00669 Bacterial flagellin N-terminal helical region IHE41_17405 PF00771 FHIPEP family IHE41_17410 PF01312 FlhB HrpN YscU SpaS Family IHE41_17415 PF01311 Bacterial export proteins, family 1 IHE41_17420 PF01313 Bacterial export proteins, family 3 IHE41_17425 PF00813 FliP family IHE41_17430 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term IHE41_17445 PF00158 Sigma-54 interaction domain IHE41_17445 PF00072 Response regulator receiver domain IHE41_17445 PF02954 Bacterial regulatory protein, Fis family IHE41_17450 PF02049 Flagellar hook-basal body complex protein FliE IHE41_17455 PF08345 Flagellar M-ring protein C-terminal IHE41_17455 PF01514 Secretory protein of YscJ/FliF family IHE41_17460 PF14842 FliG N-terminal domain IHE41_17460 PF01706 FliG C-terminal domain IHE41_17460 PF14841 FliG middle domain IHE41_17470 PF18269 T3SS EscN ATPase C-terminal domain IHE41_17470 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IHE41_17485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_17485 PF03466 LysR substrate binding domain IHE41_17520 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IHE41_17525 PF03466 LysR substrate binding domain IHE41_17525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_17545 PF00486 Transcriptional regulatory protein, C terminal IHE41_17545 PF00072 Response regulator receiver domain IHE41_17550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_17550 PF13426 PAS domain IHE41_17550 PF00072 Response regulator receiver domain IHE41_17550 PF00512 His Kinase A (phospho-acceptor) domain IHE41_17550 PF08448 PAS fold IHE41_17555 PF00080 Copper/zinc superoxide dismutase (SODC) IHE41_17560 PF00266 Aminotransferase class-V IHE41_17565 PF00497 Bacterial extracellular solute-binding proteins, family 3 IHE41_17570 PF00990 Diguanylate cyclase, GGDEF domain IHE41_17570 PF00563 EAL domain IHE41_17570 PF03707 Bacterial signalling protein N terminal repeat IHE41_17575 PF00155 Aminotransferase class I and II IHE41_17580 PF00107 Zinc-binding dehydrogenase IHE41_17580 PF08240 Alcohol dehydrogenase GroES-like domain IHE41_17610 PF00194 Eukaryotic-type carbonic anhydrase IHE41_17615 PF00924 Mechanosensitive ion channel IHE41_17625 PF01070 FMN-dependent dehydrogenase IHE41_17630 PF02652 L-lactate permease IHE41_17635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_17635 PF03466 LysR substrate binding domain IHE41_17640 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain IHE41_17640 PF00326 Prolyl oligopeptidase family IHE41_17645 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IHE41_17645 PF00005 ABC transporter IHE41_17655 PF13654 AAA domain IHE41_17655 PF05362 Lon protease (S16) C-terminal proteolytic domain IHE41_17660 PF00672 HAMP domain IHE41_17660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IHE41_17665 PF12945 Flagellar protein YcgR IHE41_17665 PF07238 PilZ domain IHE41_17680 PF00583 Acetyltransferase (GNAT) family IHE41_17685 PF12800 4Fe-4S binding domain IHE41_17685 PF12838 4Fe-4S dicluster domain IHE41_17690 PF12801 4Fe-4S binding domain IHE41_17690 PF13237 4Fe-4S dicluster domain IHE41_17705 PF12558 ATP-binding cassette cobalt transporter IHE41_17705 PF00005 ABC transporter IHE41_17710 PF07155 ECF-type riboflavin transporter, S component IHE41_17715 PF00529 HlyD membrane-fusion protein of T1SS IHE41_17715 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IHE41_17720 PF11742 Protein of unknown function (DUF3302) IHE41_17725 PF00990 Diguanylate cyclase, GGDEF domain IHE41_17740 PF01048 Phosphorylase superfamily IHE41_17745 PF08349 Protein of unknown function (DUF1722) IHE41_17750 PF13411 MerR HTH family regulatory protein IHE41_17755 PF00875 DNA photolyase IHE41_17755 PF03441 FAD binding domain of DNA photolyase IHE41_17760 PF17969 L,D-transpeptidase C-terminal domain IHE41_17760 PF01476 LysM domain IHE41_17760 PF03734 L,D-transpeptidase catalytic domain IHE41_17770 PF00271 Helicase conserved C-terminal domain IHE41_17770 PF00270 DEAD/DEAH box helicase IHE41_17775 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain IHE41_17775 PF00326 Prolyl oligopeptidase family IHE41_17780 PF00593 TonB dependent receptor IHE41_17780 PF07715 TonB-dependent Receptor Plug Domain IHE41_17800 PF00672 HAMP domain IHE41_17800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IHE41_17805 PF12849 PBP superfamily domain IHE41_17810 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_17815 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_17820 PF00005 ABC transporter IHE41_17840 PF13519 von Willebrand factor type A domain IHE41_17845 PF13519 von Willebrand factor type A domain IHE41_17855 PF01882 Protein of unknown function DUF58 IHE41_17860 PF17863 AAA lid domain IHE41_17860 PF07726 ATPase family associated with various cellular activities (AAA) IHE41_17865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IHE41_17865 PF00672 HAMP domain IHE41_17865 PF02743 Cache domain IHE41_17875 PF00196 Bacterial regulatory proteins, luxR family IHE41_17880 PF00196 Bacterial regulatory proteins, luxR family IHE41_17890 PF00664 ABC transporter transmembrane region IHE41_17890 PF00005 ABC transporter IHE41_17895 PF00529 HlyD membrane-fusion protein of T1SS IHE41_17910 PF00691 OmpA family IHE41_17910 PF01389 OmpA-like transmembrane domain IHE41_17920 PF01032 FecCD transport family IHE41_17925 PF01497 Periplasmic binding protein IHE41_17930 PF00005 ABC transporter IHE41_17935 PF07715 TonB-dependent Receptor Plug Domain IHE41_17935 PF00593 TonB dependent receptor IHE41_17940 PF00664 ABC transporter transmembrane region IHE41_17940 PF00005 ABC transporter IHE41_17945 PF13493 Domain of unknown function (DUF4118) IHE41_17945 PF02702 Osmosensitive K+ channel His kinase sensor domain IHE41_17945 PF00512 His Kinase A (phospho-acceptor) domain IHE41_17945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_17945 PF13493 Domain of unknown function (DUF4118) IHE41_17945 PF02702 Osmosensitive K+ channel His kinase sensor domain IHE41_17945 PF00512 His Kinase A (phospho-acceptor) domain IHE41_17945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_17950 PF00072 Response regulator receiver domain IHE41_17950 PF00486 Transcriptional regulatory protein, C terminal IHE41_17955 PF02080 TrkA-C domain IHE41_17955 PF02254 TrkA-N domain IHE41_17960 PF02386 Cation transport protein IHE41_17965 PF03707 Bacterial signalling protein N terminal repeat IHE41_17965 PF00990 Diguanylate cyclase, GGDEF domain IHE41_17965 PF00563 EAL domain IHE41_17970 PF00127 Copper binding proteins, plastocyanin/azurin family IHE41_17975 PF13419 Haloacid dehalogenase-like hydrolase IHE41_17985 PF01238 Phosphomannose isomerase type I IHE41_17990 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IHE41_17990 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit IHE41_17995 PF12833 Helix-turn-helix domain IHE41_18005 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit IHE41_18015 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IHE41_18015 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IHE41_18020 PF06628 Catalase-related immune-responsive IHE41_18020 PF00199 Catalase IHE41_18025 PF13417 Glutathione S-transferase, N-terminal domain IHE41_18030 PF16884 N-terminal domain of oxidoreductase IHE41_18030 PF00107 Zinc-binding dehydrogenase IHE41_18035 PF16925 Tetracyclin repressor-like, C-terminal domain IHE41_18035 PF00440 Bacterial regulatory proteins, tetR family IHE41_18040 PF04266 ASCH domain IHE41_18070 PF13439 Glycosyltransferase Family 4 IHE41_18070 PF00534 Glycosyl transferases group 1 IHE41_18080 PF13614 AAA domain IHE41_18080 PF13807 G-rich domain on putative tyrosine kinase IHE41_18080 PF02706 Chain length determinant protein IHE41_18095 PF02397 Bacterial sugar transferase IHE41_18100 PF08402 TOBE domain IHE41_18100 PF00005 ABC transporter IHE41_18105 PF01547 Bacterial extracellular solute-binding protein IHE41_18110 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_18110 PF14785 Maltose transport system permease protein MalF P2 domain IHE41_18115 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_18170 PF01872 RibD C-terminal domain IHE41_18175 PF00440 Bacterial regulatory proteins, tetR family IHE41_18175 PF02909 Tetracyclin repressor-like, C-terminal domain IHE41_18180 PF02798 Glutathione S-transferase, N-terminal domain IHE41_18185 PF00768 D-alanyl-D-alanine carboxypeptidase IHE41_18185 PF07943 Penicillin-binding protein 5, C-terminal domain IHE41_18195 PF00462 Glutaredoxin IHE41_18195 PF08534 Redoxin IHE41_18200 PF00962 Adenosine/AMP deaminase IHE41_18210 PF00313 'Cold-shock' DNA-binding domain IHE41_18215 PF05726 Pirin C-terminal cupin domain IHE41_18215 PF02678 Pirin IHE41_18220 PF01734 Patatin-like phospholipase IHE41_18230 PF01047 MarR family IHE41_18255 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IHE41_18260 PF00884 Sulfatase IHE41_18260 PF08019 Phosphoethanolamine transferase EptA/EptB IHE41_18265 PF01219 Prokaryotic diacylglycerol kinase IHE41_18275 PF00672 HAMP domain IHE41_18275 PF00512 His Kinase A (phospho-acceptor) domain IHE41_18275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_18280 PF00072 Response regulator receiver domain IHE41_18280 PF00486 Transcriptional regulatory protein, C terminal IHE41_18285 PF00106 short chain dehydrogenase IHE41_18300 PF01323 DSBA-like thioredoxin domain IHE41_18315 PF00255 Glutathione peroxidase IHE41_18320 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase IHE41_18330 PF07690 Major Facilitator Superfamily IHE41_18340 PF01966 HD domain IHE41_18350 PF07969 Amidohydrolase family IHE41_18355 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin IHE41_18360 PF01769 Divalent cation transporter IHE41_18360 PF00571 CBS domain IHE41_18360 PF03448 MgtE intracellular N domain IHE41_18365 PF03109 ABC1 family IHE41_18375 PF00155 Aminotransferase class I and II IHE41_18375 PF00392 Bacterial regulatory proteins, gntR family IHE41_18380 PF13520 Amino acid permease IHE41_18385 PF01037 Lrp/AsnC ligand binding domain IHE41_18385 PF13404 AsnC-type helix-turn-helix domain IHE41_18390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_18390 PF03466 LysR substrate binding domain IHE41_18405 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IHE41_18405 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IHE41_18410 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IHE41_18410 PF00672 HAMP domain IHE41_18410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_18410 PF00512 His Kinase A (phospho-acceptor) domain IHE41_18410 PF01627 Hpt domain IHE41_18410 PF00072 Response regulator receiver domain IHE41_18415 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IHE41_18420 PF01554 MatE IHE41_18425 PF04363 Protein of unknown function (DUF496) IHE41_18435 PF04337 Protein of unknown function, DUF480 IHE41_18440 PF01541 GIY-YIG catalytic domain IHE41_18445 PF13407 Periplasmic binding protein domain IHE41_18450 PF00072 Response regulator receiver domain IHE41_18450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_18450 PF00512 His Kinase A (phospho-acceptor) domain IHE41_18450 PF09308 LuxQ, periplasmic IHE41_18460 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IHE41_18460 PF00529 HlyD membrane-fusion protein of T1SS IHE41_18480 PF01037 Lrp/AsnC ligand binding domain IHE41_18505 PF02355 Protein export membrane protein IHE41_18505 PF13721 SecD export protein N-terminal TM region IHE41_18505 PF07549 SecD/SecF GG Motif IHE41_18510 PF07549 SecD/SecF GG Motif IHE41_18510 PF02355 Protein export membrane protein IHE41_18520 PF01810 LysE type translocator IHE41_18525 PF00106 short chain dehydrogenase IHE41_18530 PF00108 Thiolase, N-terminal domain IHE41_18530 PF02803 Thiolase, C-terminal domain IHE41_18540 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus IHE41_18550 PF03264 NapC/NirT cytochrome c family, N-terminal region IHE41_18555 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) IHE41_18560 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IHE41_18560 PF00384 Molybdopterin oxidoreductase IHE41_18560 PF01568 Molydopterin dinucleotide binding domain IHE41_18570 PF12838 4Fe-4S dicluster domain IHE41_18570 PF13187 4Fe-4S dicluster domain IHE41_18575 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term IHE41_18575 PF00672 HAMP domain IHE41_18575 PF07730 Histidine kinase IHE41_18575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_18580 PF00196 Bacterial regulatory proteins, luxR family IHE41_18580 PF00072 Response regulator receiver domain IHE41_18595 PF01546 Peptidase family M20/M25/M40 IHE41_18595 PF07687 Peptidase dimerisation domain IHE41_18600 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region IHE41_18605 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IHE41_18610 PF00873 AcrB/AcrD/AcrF family IHE41_18615 PF12729 Four helix bundle sensory module for signal transduction IHE41_18615 PF00672 HAMP domain IHE41_18615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IHE41_18620 PF00472 RF-1 domain IHE41_18625 PF13419 Haloacid dehalogenase-like hydrolase IHE41_18630 PF01389 OmpA-like transmembrane domain IHE41_18630 PF00691 OmpA family IHE41_18635 PF00793 DAHP synthetase I family IHE41_18640 PF07690 Major Facilitator Superfamily IHE41_18645 PF08447 PAS fold IHE41_18645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IHE41_18650 PF02779 Transketolase, pyrimidine binding domain IHE41_18650 PF02780 Transketolase, C-terminal domain IHE41_18650 PF00456 Transketolase, thiamine diphosphate binding domain IHE41_18655 PF00923 Transaldolase/Fructose-6-phosphate aldolase IHE41_18665 PF00704 Glycosyl hydrolases family 18 IHE41_18665 PF08329 Chitinase A, N-terminal domain IHE41_18670 PF00563 EAL domain IHE41_18670 PF00990 Diguanylate cyclase, GGDEF domain IHE41_18670 PF03707 Bacterial signalling protein N terminal repeat IHE41_18675 PF00581 Rhodanese-like domain IHE41_18695 PF00899 ThiF family IHE41_18700 PF00994 Probable molybdopterin binding domain IHE41_18700 PF03453 MoeA N-terminal region (domain I and II) IHE41_18700 PF03454 MoeA C-terminal region (domain IV) IHE41_18705 PF01227 GTP cyclohydrolase I IHE41_18710 PF01566 Natural resistance-associated macrophage protein IHE41_18720 PF00654 Voltage gated chloride channel IHE41_18735 PF00248 Aldo/keto reductase family IHE41_18740 PF00072 Response regulator receiver domain IHE41_18750 PF03853 YjeF-related protein N-terminus IHE41_18750 PF01256 Carbohydrate kinase IHE41_18755 PF00478 IMP dehydrogenase / GMP reductase domain IHE41_18765 PF00665 Integrase core domain IHE41_18765 PF09299 Mu transposase, C-terminal IHE41_18795 PF13005 zinc-finger binding domain of transposase IS66 IHE41_18795 PF13007 Transposase C of IS166 homeodomain IHE41_18795 PF13817 IS66 C-terminal element IHE41_18795 PF03050 Transposase IS66 family IHE41_18810 PF04851 Type III restriction enzyme, res subunit IHE41_18820 PF01381 Helix-turn-helix IHE41_18845 PF00550 Phosphopantetheine attachment site IHE41_18845 PF02801 Beta-ketoacyl synthase, C-terminal domain IHE41_18845 PF00698 Acyl transferase domain IHE41_18845 PF00668 Condensation domain IHE41_18845 PF16197 Ketoacyl-synthetase C-terminal extension IHE41_18845 PF00109 Beta-ketoacyl synthase, N-terminal domain IHE41_18850 PF00501 AMP-binding enzyme IHE41_18850 PF13193 AMP-binding enzyme C-terminal domain IHE41_18850 PF00550 Phosphopantetheine attachment site IHE41_18850 PF07993 Male sterility protein IHE41_18850 PF00668 Condensation domain IHE41_18860 PF00296 Luciferase-like monooxygenase IHE41_18865 PF07690 Major Facilitator Superfamily IHE41_18870 PF00550 Phosphopantetheine attachment site IHE41_18870 PF00668 Condensation domain IHE41_18870 PF00501 AMP-binding enzyme IHE41_18870 PF13193 AMP-binding enzyme C-terminal domain IHE41_18880 PF00975 Thioesterase domain IHE41_18885 PF13673 Acetyltransferase (GNAT) domain IHE41_18890 PF01648 4'-phosphopantetheinyl transferase superfamily IHE41_18890 PF17837 4'-phosphopantetheinyl transferase N-terminal domain IHE41_18895 PF00155 Aminotransferase class I and II IHE41_18900 PF13193 AMP-binding enzyme C-terminal domain IHE41_18900 PF00501 AMP-binding enzyme IHE41_18905 PF01012 Electron transfer flavoprotein domain IHE41_18905 PF00766 Electron transfer flavoprotein FAD-binding domain IHE41_18910 PF01012 Electron transfer flavoprotein domain IHE41_18920 PF00005 ABC transporter IHE41_18920 PF12399 Branched-chain amino acid ATP-binding cassette transporter IHE41_18945 PF00005 ABC transporter IHE41_18950 PF00501 AMP-binding enzyme IHE41_18950 PF14535 AMP-binding enzyme C-terminal domain IHE41_18955 PF05724 Thiopurine S-methyltransferase (TPMT) IHE41_18965 PF00034 Cytochrome c IHE41_18975 PF13411 MerR HTH family regulatory protein IHE41_18980 PF02627 Carboxymuconolactone decarboxylase family IHE41_18985 PF02567 Phenazine biosynthesis-like protein IHE41_18995 PF02322 Cytochrome bd terminal oxidase subunit II IHE41_19000 PF01654 Cytochrome bd terminal oxidase subunit I IHE41_19005 PF00155 Aminotransferase class I and II IHE41_19005 PF00392 Bacterial regulatory proteins, gntR family IHE41_19010 PF14602 Hexapeptide repeat of succinyl-transferase IHE41_19010 PF12464 Maltose acetyltransferase IHE41_19015 PF00924 Mechanosensitive ion channel IHE41_19015 PF12794 Mechanosensitive ion channel inner membrane domain 1 IHE41_19015 PF12795 Mechanosensitive ion channel porin domain IHE41_19030 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IHE41_19030 PF01627 Hpt domain IHE41_19030 PF00512 His Kinase A (phospho-acceptor) domain IHE41_19030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_19030 PF00672 HAMP domain IHE41_19030 PF00072 Response regulator receiver domain IHE41_19035 PF00682 HMGL-like IHE41_19040 PF02785 Biotin carboxylase C-terminal domain IHE41_19040 PF00289 Biotin carboxylase, N-terminal domain IHE41_19040 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IHE41_19040 PF00364 Biotin-requiring enzyme IHE41_19045 PF00378 Enoyl-CoA hydratase/isomerase IHE41_19050 PF01039 Carboxyl transferase domain IHE41_19055 PF02770 Acyl-CoA dehydrogenase, middle domain IHE41_19055 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IHE41_19055 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IHE41_19060 PF00376 MerR family regulatory protein IHE41_19060 PF09278 MerR, DNA binding IHE41_19065 PF02803 Thiolase, C-terminal domain IHE41_19065 PF00108 Thiolase, N-terminal domain IHE41_19070 PF00171 Aldehyde dehydrogenase family IHE41_19075 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IHE41_19075 PF02770 Acyl-CoA dehydrogenase, middle domain IHE41_19075 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IHE41_19080 PF00378 Enoyl-CoA hydratase/isomerase IHE41_19090 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IHE41_19090 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IHE41_19100 PF17151 Periplasmic sensor domain IHE41_19100 PF00990 Diguanylate cyclase, GGDEF domain IHE41_19105 PF13977 BetI-type transcriptional repressor, C-terminal IHE41_19105 PF00440 Bacterial regulatory proteins, tetR family IHE41_19110 PF00171 Aldehyde dehydrogenase family IHE41_19115 PF05199 GMC oxidoreductase IHE41_19115 PF00732 GMC oxidoreductase IHE41_19120 PF04069 Substrate binding domain of ABC-type glycine betaine transport system IHE41_19125 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_19130 PF00005 ABC transporter IHE41_19130 PF00571 CBS domain IHE41_19135 PF00881 Nitroreductase family IHE41_19145 PF01145 SPFH domain / Band 7 family IHE41_19145 PF16200 C-terminal region of band_7 IHE41_19155 PF00563 EAL domain IHE41_19155 PF00990 Diguanylate cyclase, GGDEF domain IHE41_19155 PF03707 Bacterial signalling protein N terminal repeat IHE41_19155 PF13188 PAS domain IHE41_19160 PF03150 Di-haem cytochrome c peroxidase IHE41_19160 PF00034 Cytochrome c IHE41_19165 PF00072 Response regulator receiver domain IHE41_19165 PF09308 LuxQ, periplasmic IHE41_19165 PF00512 His Kinase A (phospho-acceptor) domain IHE41_19165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_19180 PF04116 Fatty acid hydroxylase superfamily IHE41_19190 PF12167 Arm DNA-binding domain IHE41_19190 PF00589 Phage integrase family IHE41_19200 PF02223 Thymidylate kinase IHE41_19275 PF01048 Phosphorylase superfamily IHE41_19280 PF00990 Diguanylate cyclase, GGDEF domain IHE41_19280 PF00563 EAL domain IHE41_19285 PF05025 RbsD / FucU transport protein family IHE41_19290 PF00005 ABC transporter IHE41_19295 PF02653 Branched-chain amino acid transport system / permease component IHE41_19300 PF13407 Periplasmic binding protein domain IHE41_19305 PF00294 pfkB family carbohydrate kinase IHE41_19310 PF00356 Bacterial regulatory proteins, lacI family IHE41_19320 PF04973 Nicotinamide mononucleotide transporter IHE41_19325 PF01048 Phosphorylase superfamily IHE41_19340 PF00072 Response regulator receiver domain IHE41_19340 PF00486 Transcriptional regulatory protein, C terminal IHE41_19355 PF00245 Alkaline phosphatase IHE41_19365 PF01483 Proprotein convertase P-domain IHE41_19365 PF00082 Subtilase family IHE41_19375 PF00990 Diguanylate cyclase, GGDEF domain IHE41_19375 PF00072 Response regulator receiver domain IHE41_19380 PF03222 Tryptophan/tyrosine permease family IHE41_19390 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IHE41_19390 PF00384 Molybdopterin oxidoreductase IHE41_19390 PF01568 Molydopterin dinucleotide binding domain IHE41_19395 PF14824 Sirohaem biosynthesis protein central IHE41_19395 PF10414 Sirohaem synthase dimerisation region IHE41_19395 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IHE41_19400 PF02885 Glycosyl transferase family, helical bundle domain IHE41_19400 PF00591 Glycosyl transferase family, a/b domain IHE41_19405 PF01738 Dienelactone hydrolase family IHE41_19410 PF03861 ANTAR domain IHE41_19410 PF08376 Nitrate and nitrite sensing IHE41_19420 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_19425 PF00005 ABC transporter IHE41_19430 PF13806 Rieske-like [2Fe-2S] domain IHE41_19430 PF07992 Pyridine nucleotide-disulphide oxidoreductase IHE41_19430 PF18267 Rubredoxin NAD+ reductase C-terminal domain IHE41_19430 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IHE41_19430 PF01077 Nitrite and sulphite reductase 4Fe-4S domain IHE41_19430 PF04324 BFD-like [2Fe-2S] binding domain IHE41_19445 PF08361 MAATS-type transcriptional repressor, C-terminal region IHE41_19445 PF00440 Bacterial regulatory proteins, tetR family IHE41_19460 PF00211 Adenylate and Guanylate cyclase catalytic domain IHE41_19460 PF00072 Response regulator receiver domain IHE41_19485 PF03793 PASTA domain IHE41_19485 PF00069 Protein kinase domain IHE41_19500 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE IHE41_19505 PF00691 OmpA family IHE41_19505 PF13677 Membrane MotB of proton-channel complex MotA/MotB IHE41_19510 PF06761 Intracellular multiplication and human macrophage-killing IHE41_19510 PF14331 ImcF-related N-terminal domain IHE41_19510 PF06744 Type VI secretion protein IcmF C-terminal IHE41_19530 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 IHE41_19535 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath IHE41_19540 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath IHE41_19555 PF05947 Type VI secretion system, TssF IHE41_19565 PF10431 C-terminal, D2-small domain, of ClpB protein IHE41_19565 PF17871 AAA lid domain IHE41_19565 PF00004 ATPase family associated with various cellular activities (AAA) IHE41_19565 PF07724 AAA domain (Cdc48 subfamily) IHE41_19575 PF06715 Gp5 C-terminal repeat (3 copies) IHE41_19575 PF04717 Type VI secretion system, phage-baseplate injector IHE41_19590 PF00149 Calcineurin-like phosphoesterase IHE41_19590 PF12320 Type 5 capsule protein repressor C-terminal domain IHE41_19595 PF13476 AAA domain IHE41_19615 PF08212 Lipocalin-like domain IHE41_19625 PF07690 Major Facilitator Superfamily IHE41_19635 PF03606 C4-dicarboxylate anaerobic carrier IHE41_19640 PF00034 Cytochrome c IHE41_19645 PF01212 Beta-eliminating lyase IHE41_19655 PF07728 AAA domain (dynein-related subfamily) IHE41_19655 PF17868 AAA lid domain IHE41_19655 PF12592 Protein of unknown function (DUF3763) IHE41_19660 PF05762 VWA domain containing CoxE-like protein IHE41_19675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_19675 PF03466 LysR substrate binding domain IHE41_19680 PF09330 D-lactate dehydrogenase, membrane binding IHE41_19680 PF01565 FAD binding domain IHE41_19695 PF00842 Alanine racemase, C-terminal domain IHE41_19695 PF01168 Alanine racemase, N-terminal domain IHE41_19700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IHE41_19700 PF00672 HAMP domain IHE41_19715 PF09154 Domain of unknown function (DUF1939) IHE41_19715 PF00128 Alpha amylase, catalytic domain IHE41_19735 PF06965 Na+/H+ antiporter 1 IHE41_19735 PF13462 Thioredoxin IHE41_19770 PF01272 Transcription elongation factor, GreA/GreB, C-term IHE41_19770 PF14760 Rnk N-terminus IHE41_19775 PF04324 BFD-like [2Fe-2S] binding domain IHE41_19775 PF01077 Nitrite and sulphite reductase 4Fe-4S domain IHE41_19775 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IHE41_19775 PF07992 Pyridine nucleotide-disulphide oxidoreductase IHE41_19775 PF18267 Rubredoxin NAD+ reductase C-terminal domain IHE41_19780 PF13806 Rieske-like [2Fe-2S] domain IHE41_19785 PF01226 Formate/nitrite transporter IHE41_19790 PF10414 Sirohaem synthase dimerisation region IHE41_19790 PF14824 Sirohaem biosynthesis protein central IHE41_19790 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IHE41_19805 PF03605 Anaerobic c4-dicarboxylate membrane transporter IHE41_19815 PF07715 TonB-dependent Receptor Plug Domain IHE41_19815 PF00593 TonB dependent receptor IHE41_19830 PF11756 Nitrous oxide-stimulated promoter IHE41_19835 PF01554 MatE IHE41_19840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_19840 PF00512 His Kinase A (phospho-acceptor) domain IHE41_19840 PF12833 Helix-turn-helix domain IHE41_19840 PF07494 Two component regulator propeller IHE41_19840 PF00072 Response regulator receiver domain IHE41_19840 PF07495 Y_Y_Y domain IHE41_19845 PF07690 Major Facilitator Superfamily IHE41_19850 PF00085 Thioredoxin IHE41_19855 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IHE41_19855 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IHE41_19875 PF01238 Phosphomannose isomerase type I IHE41_19880 PF07690 Major Facilitator Superfamily IHE41_19885 PF07730 Histidine kinase IHE41_19885 PF05231 MASE1 IHE41_19885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_19890 PF00072 Response regulator receiver domain IHE41_19890 PF00196 Bacterial regulatory proteins, luxR family IHE41_19895 PF07690 Major Facilitator Superfamily IHE41_19900 PF02634 FdhD/NarQ family IHE41_19905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_19905 PF03466 LysR substrate binding domain IHE41_19910 PF00384 Molybdopterin oxidoreductase IHE41_19915 PF07992 Pyridine nucleotide-disulphide oxidoreductase IHE41_19915 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IHE41_19930 PF04143 Sulphur transport IHE41_19940 PF00873 AcrB/AcrD/AcrF family IHE41_19945 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IHE41_19955 PF03477 ATP cone domain IHE41_19955 PF13597 Anaerobic ribonucleoside-triphosphate reductase IHE41_19965 PF01554 MatE IHE41_19970 PF12833 Helix-turn-helix domain IHE41_19975 PF00155 Aminotransferase class I and II IHE41_19980 PF08443 RimK-like ATP-grasp domain IHE41_19980 PF18030 RimK PreATP-grasp domain IHE41_19990 PF04076 Bacterial OB fold (BOF) protein IHE41_19995 PF07685 CobB/CobQ-like glutamine amidotransferase domain IHE41_20005 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_20010 PF00005 ABC transporter IHE41_20010 PF03459 TOBE domain IHE41_20020 PF01590 GAF domain IHE41_20020 PF00360 Phytochrome region IHE41_20020 PF00990 Diguanylate cyclase, GGDEF domain IHE41_20020 PF00563 EAL domain IHE41_20030 PF00990 Diguanylate cyclase, GGDEF domain IHE41_20045 PF05222 Alanine dehydrogenase/PNT, N-terminal domain IHE41_20045 PF01262 Alanine dehydrogenase/PNT, C-terminal domain IHE41_20045 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch IHE41_20050 PF02233 NAD(P) transhydrogenase beta subunit IHE41_20060 PF00072 Response regulator receiver domain IHE41_20060 PF00486 Transcriptional regulatory protein, C terminal IHE41_20075 PF03701 Uncharacterised protein family (UPF0181) IHE41_20080 PF00582 Universal stress protein family IHE41_20090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_20090 PF03466 LysR substrate binding domain IHE41_20130 PF00263 Bacterial type II and III secretion system protein IHE41_20130 PF03958 Bacterial type II/III secretion system short domain IHE41_20160 PF05840 Bacteriophage replication gene A protein (GPA) IHE41_20215 PF05707 Zonular occludens toxin (Zot) IHE41_20265 PF05707 Zonular occludens toxin (Zot) IHE41_20275 PF01253 Translation initiation factor SUI1 IHE41_20285 PF07478 D-ala D-ala ligase C-terminus IHE41_20285 PF01820 D-ala D-ala ligase N-terminus IHE41_20295 PF00583 Acetyltransferase (GNAT) family IHE41_20295 PF13380 CoA binding domain IHE41_20295 PF13607 Succinyl-CoA ligase like flavodoxin domain IHE41_20300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_20300 PF03466 LysR substrate binding domain IHE41_20305 PF07715 TonB-dependent Receptor Plug Domain IHE41_20305 PF00593 TonB dependent receptor IHE41_20310 PF16363 GDP-mannose 4,6 dehydratase IHE41_20315 PF13426 PAS domain IHE41_20315 PF08448 PAS fold IHE41_20315 PF05231 MASE1 IHE41_20315 PF08447 PAS fold IHE41_20315 PF00563 EAL domain IHE41_20315 PF00990 Diguanylate cyclase, GGDEF domain IHE41_20320 PF03746 LamB/YcsF family IHE41_20325 PF02682 Carboxyltransferase domain, subdomain C and D IHE41_20330 PF02626 Carboxyltransferase domain, subdomain A and B IHE41_20345 PF00005 ABC transporter IHE41_20350 PF13472 GDSL-like Lipase/Acylhydrolase family IHE41_20355 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase IHE41_20355 PF07055 Enoyl reductase FAD binding domain IHE41_20355 PF12241 Trans-2-enoyl-CoA reductase catalytic region IHE41_20360 PF13188 PAS domain IHE41_20360 PF03707 Bacterial signalling protein N terminal repeat IHE41_20360 PF00990 Diguanylate cyclase, GGDEF domain IHE41_20360 PF00563 EAL domain IHE41_20370 PF01556 DnaJ C terminal domain IHE41_20370 PF00226 DnaJ domain IHE41_20370 PF00684 DnaJ central domain IHE41_20395 PF12793 Sugar transport-related sRNA regulator N-term IHE41_20395 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IHE41_20405 PF03061 Thioesterase superfamily IHE41_20420 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) IHE41_20425 PF12262 Bacterial virulence factor lipase N-terminal IHE41_20440 PF03741 Integral membrane protein TerC family IHE41_20445 PF02872 5'-nucleotidase, C-terminal domain IHE41_20445 PF00149 Calcineurin-like phosphoesterase IHE41_20450 PF11398 Protein of unknown function (DUF2813) IHE41_20455 PF06496 Protein of unknown function (DUF1097) IHE41_20460 PF03466 LysR substrate binding domain IHE41_20460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_20465 PF01226 Formate/nitrite transporter IHE41_20470 PF04264 YceI-like domain IHE41_20475 PF01292 Prokaryotic cytochrome b561 IHE41_20490 PF12792 CSS motif domain associated with EAL IHE41_20490 PF00563 EAL domain IHE41_20495 PF00270 DEAD/DEAH box helicase IHE41_20495 PF00271 Helicase conserved C-terminal domain IHE41_20500 PF04336 Acyl carrier protein phosphodiesterase IHE41_20505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IHE41_20510 PF13419 Haloacid dehalogenase-like hydrolase IHE41_20515 PF11849 Domain of unknown function (DUF3369) IHE41_20530 PF00294 pfkB family carbohydrate kinase IHE41_20535 PF01268 Formate--tetrahydrofolate ligase IHE41_20540 PF00483 Nucleotidyl transferase IHE41_20545 PF06483 Chitinase C IHE41_20545 PF00704 Glycosyl hydrolases family 18 IHE41_20550 PF06719 AraC-type transcriptional regulator N-terminus IHE41_20550 PF12833 Helix-turn-helix domain IHE41_20555 PF00465 Iron-containing alcohol dehydrogenase IHE41_20565 PF02954 Bacterial regulatory protein, Fis family IHE41_20565 PF00072 Response regulator receiver domain IHE41_20565 PF14532 Sigma-54 interaction domain IHE41_20570 PF00672 HAMP domain IHE41_20570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_20570 PF00512 His Kinase A (phospho-acceptor) domain IHE41_20580 PF07690 Major Facilitator Superfamily IHE41_20585 PF00224 Pyruvate kinase, barrel domain IHE41_20585 PF02887 Pyruvate kinase, alpha/beta domain IHE41_20590 PF00005 ABC transporter IHE41_20595 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_20600 PF00497 Bacterial extracellular solute-binding proteins, family 3 IHE41_20605 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_20610 PF00563 EAL domain IHE41_20610 PF01590 GAF domain IHE41_20610 PF00990 Diguanylate cyclase, GGDEF domain IHE41_20610 PF00989 PAS fold IHE41_20625 PF00356 Bacterial regulatory proteins, lacI family IHE41_20625 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family IHE41_20630 PF00381 PTS HPr component phosphorylation site IHE41_20630 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IHE41_20635 PF00294 pfkB family carbohydrate kinase IHE41_20640 PF02378 Phosphotransferase system, EIIC IHE41_20640 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit IHE41_20650 PF00873 AcrB/AcrD/AcrF family IHE41_20670 PF01571 Aminomethyltransferase folate-binding domain IHE41_20670 PF08669 Glycine cleavage T-protein C-terminal barrel domain IHE41_20680 PF00464 Serine hydroxymethyltransferase IHE41_20685 PF01597 Glycine cleavage H-protein IHE41_20690 PF02347 Glycine cleavage system P-protein IHE41_20720 PF01039 Carboxyl transferase domain IHE41_20720 PF17848 Acetyl-coA carboxylase zinc finger domain IHE41_20725 PF03466 LysR substrate binding domain IHE41_20725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_20730 PF11490 DNA polymerase III polC-type N-terminus II IHE41_20730 PF07733 Bacterial DNA polymerase III alpha NTPase domain IHE41_20730 PF02811 PHP domain IHE41_20730 PF00929 Exonuclease IHE41_20730 PF17657 Bacterial DNA polymerase III alpha subunit finger domain IHE41_20730 PF14579 Helix-hairpin-helix motif IHE41_20735 PF00664 ABC transporter transmembrane region IHE41_20735 PF00005 ABC transporter IHE41_20755 PF02253 Phospholipase A1 IHE41_20765 PF09278 MerR, DNA binding IHE41_20765 PF00376 MerR family regulatory protein IHE41_20770 PF01327 Polypeptide deformylase IHE41_20800 PF03448 MgtE intracellular N domain IHE41_20800 PF01769 Divalent cation transporter IHE41_20800 PF00571 CBS domain IHE41_20820 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IHE41_20825 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IHE41_20835 PF01757 Acyltransferase family IHE41_20845 PF09722 Protein of unknown function (DUF2384) IHE41_20850 PF00141 Peroxidase IHE41_20855 PF13187 4Fe-4S dicluster domain IHE41_20855 PF01645 Conserved region in glutamate synthase IHE41_20865 PF12431 Transcriptional regulator IHE41_20865 PF00072 Response regulator receiver domain IHE41_20870 PF00989 PAS fold IHE41_20870 PF17203 Single cache domain 3 IHE41_20870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_20870 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain IHE41_20875 PF00939 Sodium:sulfate symporter transmembrane region IHE41_20880 PF00171 Aldehyde dehydrogenase family IHE41_20900 PF00892 EamA-like transporter family IHE41_20905 PF00893 Small Multidrug Resistance protein IHE41_20910 PF03413 Peptidase propeptide and YPEB domain IHE41_20910 PF01447 Thermolysin metallopeptidase, catalytic domain IHE41_20910 PF02868 Thermolysin metallopeptidase, alpha-helical domain IHE41_20910 PF04151 Bacterial pre-peptidase C-terminal domain IHE41_20910 PF07504 Fungalysin/Thermolysin Propeptide Motif IHE41_20920 PF01569 PAP2 superfamily IHE41_20930 PF00892 EamA-like transporter family IHE41_20945 PF00072 Response regulator receiver domain IHE41_20945 PF01584 CheW-like domain IHE41_20960 PF00196 Bacterial regulatory proteins, luxR family IHE41_20960 PF00072 Response regulator receiver domain IHE41_20970 PF00990 Diguanylate cyclase, GGDEF domain IHE41_20975 PF00196 Bacterial regulatory proteins, luxR family IHE41_20975 PF00072 Response regulator receiver domain IHE41_20980 PF03707 Bacterial signalling protein N terminal repeat IHE41_20980 PF00990 Diguanylate cyclase, GGDEF domain IHE41_20980 PF00563 EAL domain IHE41_20980 PF13188 PAS domain IHE41_20985 PF00072 Response regulator receiver domain IHE41_20985 PF09456 RcsC Alpha-Beta-Loop (ABL) IHE41_20985 PF00512 His Kinase A (phospho-acceptor) domain IHE41_20985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_20995 PF03466 LysR substrate binding domain IHE41_20995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_21000 PF03466 LysR substrate binding domain IHE41_21000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_21010 PF05736 OprF membrane domain IHE41_21010 PF00691 OmpA family IHE41_21045 PF00437 Type II/IV secretion system protein IHE41_21060 PF04972 BON domain IHE41_21060 PF00263 Bacterial type II and III secretion system protein IHE41_21060 PF13629 Pilus formation protein N terminal region IHE41_21080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_21080 PF03466 LysR substrate binding domain IHE41_21085 PF12833 Helix-turn-helix domain IHE41_21095 PF01752 Collagenase IHE41_21095 PF08453 Peptidase family M9 N-terminal IHE41_21095 PF04151 Bacterial pre-peptidase C-terminal domain IHE41_21105 PF01926 50S ribosome-binding GTPase IHE41_21110 PF00155 Aminotransferase class I and II IHE41_21115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_21115 PF00072 Response regulator receiver domain IHE41_21125 PF00814 Glycoprotease family IHE41_21125 PF00583 Acetyltransferase (GNAT) family IHE41_21135 PF03606 C4-dicarboxylate anaerobic carrier IHE41_21140 PF04011 LemA family IHE41_21145 PF01435 Peptidase family M48 IHE41_21160 PF18081 Fanconi anemia-associated nuclease SAP domain IHE41_21160 PF08774 VRR-NUC domain IHE41_21170 PF13186 Iron-sulfur cluster-binding domain IHE41_21170 PF04055 Radical SAM superfamily IHE41_21185 PF04076 Bacterial OB fold (BOF) protein IHE41_21190 PF00781 Diacylglycerol kinase catalytic domain IHE41_21195 PF03466 LysR substrate binding domain IHE41_21195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_21200 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region IHE41_21215 PF00092 von Willebrand factor type A domain IHE41_21230 PF17863 AAA lid domain IHE41_21230 PF07726 ATPase family associated with various cellular activities (AAA) IHE41_21235 PF13186 Iron-sulfur cluster-binding domain IHE41_21235 PF04055 Radical SAM superfamily IHE41_21240 PF00884 Sulfatase IHE41_21245 PF03466 LysR substrate binding domain IHE41_21245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_21255 PF00884 Sulfatase IHE41_21260 PF00884 Sulfatase IHE41_21260 PF16385 Domain of unknown function IHE41_21265 PF00486 Transcriptional regulatory protein, C terminal IHE41_21265 PF00072 Response regulator receiver domain IHE41_21280 PF01627 Hpt domain IHE41_21280 PF00512 His Kinase A (phospho-acceptor) domain IHE41_21280 PF00672 HAMP domain IHE41_21280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_21280 PF00072 Response regulator receiver domain IHE41_21285 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family IHE41_21290 PF02142 MGS-like domain IHE41_21295 PF00580 UvrD/REP helicase N-terminal domain IHE41_21295 PF13361 UvrD-like helicase C-terminal domain IHE41_21295 PF12462 DNA helicase IV / RNA helicase N terminal IHE41_21300 PF12805 FUSC-like inner membrane protein yccS IHE41_21330 PF00593 TonB dependent receptor IHE41_21330 PF07715 TonB-dependent Receptor Plug Domain IHE41_21340 PF13411 MerR HTH family regulatory protein IHE41_21345 PF00005 ABC transporter IHE41_21350 PF01032 FecCD transport family IHE41_21355 PF01032 FecCD transport family IHE41_21360 PF01497 Periplasmic binding protein IHE41_21380 PF04314 Copper chaperone PCu(A)C IHE41_21385 PF00012 Hsp70 protein IHE41_21400 PF00676 Dehydrogenase E1 component IHE41_21405 PF02779 Transketolase, pyrimidine binding domain IHE41_21405 PF02780 Transketolase, C-terminal domain IHE41_21410 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IHE41_21410 PF00364 Biotin-requiring enzyme IHE41_21410 PF02817 e3 binding domain IHE41_21420 PF02798 Glutathione S-transferase, N-terminal domain IHE41_21420 PF00043 Glutathione S-transferase, C-terminal domain IHE41_21425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_21425 PF03466 LysR substrate binding domain IHE41_21435 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_21440 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_21445 PF00497 Bacterial extracellular solute-binding proteins, family 3 IHE41_21450 PF00005 ABC transporter IHE41_21455 PF08031 Berberine and berberine like IHE41_21455 PF01565 FAD binding domain IHE41_21460 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IHE41_21470 PF01040 UbiA prenyltransferase family IHE41_21480 PF00510 Cytochrome c oxidase subunit III IHE41_21485 PF00115 Cytochrome C and Quinol oxidase polypeptide I IHE41_21490 PF06481 COX Aromatic Rich Motif IHE41_21490 PF00116 Cytochrome C oxidase subunit II, periplasmic domain IHE41_21500 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IHE41_21500 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IHE41_21505 PF00378 Enoyl-CoA hydratase/isomerase IHE41_21510 PF00378 Enoyl-CoA hydratase/isomerase IHE41_21515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IHE41_21515 PF02770 Acyl-CoA dehydrogenase, middle domain IHE41_21515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IHE41_21520 PF00171 Aldehyde dehydrogenase family IHE41_21525 PF02803 Thiolase, C-terminal domain IHE41_21525 PF00108 Thiolase, N-terminal domain IHE41_21530 PF00376 MerR family regulatory protein IHE41_21530 PF09278 MerR, DNA binding IHE41_21535 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IHE41_21535 PF02770 Acyl-CoA dehydrogenase, middle domain IHE41_21535 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IHE41_21540 PF01039 Carboxyl transferase domain IHE41_21545 PF00378 Enoyl-CoA hydratase/isomerase IHE41_21550 PF00682 HMGL-like IHE41_21555 PF10063 Uncharacterized integral membrane protein (DUF2301) IHE41_21565 PF08447 PAS fold IHE41_21565 PF13426 PAS domain IHE41_21565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IHE41_21570 PF00871 Acetokinase family IHE41_21575 PF13426 PAS domain IHE41_21575 PF00563 EAL domain IHE41_21575 PF00990 Diguanylate cyclase, GGDEF domain IHE41_21580 PF00271 Helicase conserved C-terminal domain IHE41_21580 PF00270 DEAD/DEAH box helicase IHE41_21580 PF03880 DbpA RNA binding domain IHE41_21585 PF00575 S1 RNA binding domain IHE41_21585 PF00773 RNB domain IHE41_21585 PF08206 Ribonuclease B OB domain IHE41_21590 PF12833 Helix-turn-helix domain IHE41_21600 PF12849 PBP superfamily domain IHE41_21605 PF01575 MaoC like domain IHE41_21615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_21615 PF03466 LysR substrate binding domain IHE41_21620 PF13186 Iron-sulfur cluster-binding domain IHE41_21620 PF04055 Radical SAM superfamily IHE41_21625 PF00884 Sulfatase IHE41_21630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_21630 PF03466 LysR substrate binding domain IHE41_21640 PF12729 Four helix bundle sensory module for signal transduction IHE41_21640 PF00672 HAMP domain IHE41_21640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IHE41_21645 PF00005 ABC transporter IHE41_21650 PF12792 CSS motif domain associated with EAL IHE41_21650 PF00563 EAL domain IHE41_21670 PF00271 Helicase conserved C-terminal domain IHE41_21670 PF00270 DEAD/DEAH box helicase IHE41_21675 PF07683 Cobalamin synthesis protein cobW C-terminal domain IHE41_21675 PF02492 CobW/HypB/UreG, nucleotide-binding domain IHE41_21685 PF01470 Pyroglutamyl peptidase IHE41_21695 PF00291 Pyridoxal-phosphate dependent enzyme IHE41_21700 PF09905 DNA-binding protein VF530 IHE41_21705 PF00271 Helicase conserved C-terminal domain IHE41_21705 PF00270 DEAD/DEAH box helicase IHE41_21710 PF12843 Putative quorum-sensing-regulated virulence factor IHE41_21730 PF01329 Pterin 4 alpha carbinolamine dehydratase IHE41_21735 PF00351 Biopterin-dependent aromatic amino acid hydroxylase IHE41_21740 PF00501 AMP-binding enzyme IHE41_21740 PF13193 AMP-binding enzyme C-terminal domain IHE41_21750 PF03466 LysR substrate binding domain IHE41_21750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_21775 PF00892 EamA-like transporter family IHE41_21790 PF00465 Iron-containing alcohol dehydrogenase IHE41_21795 PF07995 Glucose / Sorbosone dehydrogenase IHE41_21805 PF00210 Ferritin-like domain IHE41_21810 PF00672 HAMP domain IHE41_21810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IHE41_21810 PF17200 Single Cache domain 2 IHE41_21820 PF12704 MacB-like periplasmic core domain IHE41_21820 PF02687 FtsX-like permease family IHE41_21820 PF00005 ABC transporter IHE41_21825 PF00005 ABC transporter IHE41_21825 PF02687 FtsX-like permease family IHE41_21825 PF12704 MacB-like periplasmic core domain IHE41_21840 PF00990 Diguanylate cyclase, GGDEF domain IHE41_21845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IHE41_21845 PF08447 PAS fold IHE41_21845 PF13426 PAS domain IHE41_21850 PF03889 Alternative ribosome-rescue factor A IHE41_21855 PF00313 'Cold-shock' DNA-binding domain IHE41_21885 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase IHE41_21885 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IHE41_21890 PF01040 UbiA prenyltransferase family IHE41_21895 PF02628 Cytochrome oxidase assembly protein IHE41_21915 PF00510 Cytochrome c oxidase subunit III IHE41_21920 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 IHE41_21925 PF00115 Cytochrome C and Quinol oxidase polypeptide I IHE41_21930 PF00116 Cytochrome C oxidase subunit II, periplasmic domain IHE41_21930 PF02790 Cytochrome C oxidase subunit II, transmembrane domain IHE41_21935 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IHE41_21935 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IHE41_21935 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IHE41_21935 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IHE41_21945 PF01810 LysE type translocator IHE41_21950 PF12833 Helix-turn-helix domain IHE41_21965 PF01557 Fumarylacetoacetate (FAA) hydrolase family IHE41_21975 PF00267 Gram-negative porin IHE41_21980 PF00892 EamA-like transporter family IHE41_21985 PF00462 Glutaredoxin IHE41_21995 PF07690 Major Facilitator Superfamily IHE41_22000 PF03466 LysR substrate binding domain IHE41_22000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_22005 PF08447 PAS fold IHE41_22005 PF08448 PAS fold IHE41_22005 PF00990 Diguanylate cyclase, GGDEF domain IHE41_22005 PF00563 EAL domain IHE41_22010 PF01476 LysM domain IHE41_22010 PF01551 Peptidase family M23 IHE41_22010 PF08525 Opacity-associated protein A N-terminal motif IHE41_22030 PF07670 Nucleoside recognition IHE41_22035 PF02743 Cache domain IHE41_22035 PF00672 HAMP domain IHE41_22035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IHE41_22045 PF03222 Tryptophan/tyrosine permease family IHE41_22080 PF08240 Alcohol dehydrogenase GroES-like domain IHE41_22080 PF00107 Zinc-binding dehydrogenase IHE41_22085 PF02378 Phosphotransferase system, EIIC IHE41_22085 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit IHE41_22090 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IHE41_22105 PF01758 Sodium Bile acid symporter family IHE41_22115 PF01161 Phosphatidylethanolamine-binding protein IHE41_22120 PF02567 Phenazine biosynthesis-like protein IHE41_22125 PF10282 Lactonase, 7-bladed beta-propeller IHE41_22130 PF00672 HAMP domain IHE41_22130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IHE41_22140 PF00005 ABC transporter IHE41_22160 PF12838 4Fe-4S dicluster domain IHE41_22160 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IHE41_22160 PF00384 Molybdopterin oxidoreductase IHE41_22160 PF01568 Molydopterin dinucleotide binding domain IHE41_22160 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region IHE41_22180 PF00873 AcrB/AcrD/AcrF family IHE41_22200 PF00990 Diguanylate cyclase, GGDEF domain IHE41_22210 PF13302 Acetyltransferase (GNAT) domain IHE41_22220 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) IHE41_22225 PF00873 AcrB/AcrD/AcrF family IHE41_22230 PF13533 Biotin-lipoyl like IHE41_22240 PF00326 Prolyl oligopeptidase family IHE41_22240 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain IHE41_22245 PF00005 ABC transporter IHE41_22245 PF16326 ABC transporter C-terminal domain IHE41_22245 PF12848 ABC transporter IHE41_22250 PF00582 Universal stress protein family IHE41_22255 PF02525 Flavodoxin-like fold IHE41_22260 PF00999 Sodium/hydrogen exchanger family IHE41_22260 PF02254 TrkA-N domain IHE41_22275 PF00128 Alpha amylase, catalytic domain IHE41_22285 PF08453 Peptidase family M9 N-terminal IHE41_22285 PF04151 Bacterial pre-peptidase C-terminal domain IHE41_22285 PF01752 Collagenase IHE41_22300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_22300 PF03466 LysR substrate binding domain IHE41_22305 PF00210 Ferritin-like domain IHE41_22310 PF00141 Peroxidase IHE41_22330 PF00082 Subtilase family IHE41_22340 PF00580 UvrD/REP helicase N-terminal domain IHE41_22340 PF13361 UvrD-like helicase C-terminal domain IHE41_22345 PF07690 Major Facilitator Superfamily IHE41_22350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_22350 PF03466 LysR substrate binding domain IHE41_22365 PF00239 Resolvase, N terminal domain IHE41_22365 PF02796 Helix-turn-helix domain of resolvase IHE41_22385 PF00072 Response regulator receiver domain IHE41_22385 PF01584 CheW-like domain IHE41_22395 PF01243 Pyridoxamine 5'-phosphate oxidase IHE41_22400 PF06228 Haem utilisation ChuX/HutX IHE41_22405 PF04055 Radical SAM superfamily IHE41_22410 PF03544 Gram-negative bacterial TonB protein C-terminal IHE41_22415 PF01618 MotA/TolQ/ExbB proton channel family IHE41_22420 PF02472 Biopolymer transport protein ExbD/TolR IHE41_22430 PF01032 FecCD transport family IHE41_22435 PF00005 ABC transporter IHE41_22475 PF01467 Cytidylyltransferase-like IHE41_22480 PF02540 NAD synthase IHE41_22485 PF03476 MOSC N-terminal beta barrel domain IHE41_22485 PF00111 2Fe-2S iron-sulfur cluster binding domain IHE41_22485 PF03473 MOSC domain IHE41_22485 PF00111 2Fe-2S iron-sulfur cluster binding domain IHE41_22485 PF03476 MOSC N-terminal beta barrel domain IHE41_22485 PF03473 MOSC domain IHE41_22490 PF01679 Proteolipid membrane potential modulator IHE41_22495 PF01979 Amidohydrolase family IHE41_22500 PF05661 Protein of unknown function (DUF808) IHE41_22530 PF01497 Periplasmic binding protein IHE41_22530 PF12833 Helix-turn-helix domain IHE41_22535 PF00155 Aminotransferase class I and II IHE41_22560 PF00535 Glycosyl transferase family 2 IHE41_22575 PF00271 Helicase conserved C-terminal domain IHE41_22575 PF00270 DEAD/DEAH box helicase IHE41_22585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_22585 PF03466 LysR substrate binding domain IHE41_22590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_22590 PF03466 LysR substrate binding domain IHE41_22600 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IHE41_22605 PF00107 Zinc-binding dehydrogenase IHE41_22605 PF08240 Alcohol dehydrogenase GroES-like domain IHE41_22620 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term IHE41_22620 PF12833 Helix-turn-helix domain IHE41_22625 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) IHE41_22640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_22640 PF03466 LysR substrate binding domain IHE41_22645 PF00709 Adenylosuccinate synthetase IHE41_22650 PF00710 Asparaginase, N-terminal IHE41_22650 PF17763 Glutaminase/Asparaginase C-terminal domain IHE41_22655 PF03618 Kinase/pyrophosphorylase IHE41_22660 PF00391 PEP-utilising enzyme, mobile domain IHE41_22660 PF02896 PEP-utilising enzyme, TIM barrel domain IHE41_22660 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain IHE41_22675 PF00579 tRNA synthetases class I (W and Y) IHE41_22680 PF13416 Bacterial extracellular solute-binding protein IHE41_22690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_22690 PF03466 LysR substrate binding domain IHE41_22695 PF13533 Biotin-lipoyl like IHE41_22700 PF00873 AcrB/AcrD/AcrF family IHE41_22715 PF07694 5TMR of 5TMR-LYT IHE41_22715 PF00990 Diguanylate cyclase, GGDEF domain IHE41_22725 PF00196 Bacterial regulatory proteins, luxR family IHE41_22730 PF00703 Glycosyl hydrolases family 2 IHE41_22730 PF02836 Glycosyl hydrolases family 2, TIM barrel domain IHE41_22730 PF02837 Glycosyl hydrolases family 2, sugar binding domain IHE41_22730 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 IHE41_22735 PF02028 BCCT, betaine/carnitine/choline family transporter IHE41_22740 PF00392 Bacterial regulatory proteins, gntR family IHE41_22740 PF07702 UTRA domain IHE41_22765 PF00005 ABC transporter IHE41_22765 PF08402 TOBE domain IHE41_22790 PF00873 AcrB/AcrD/AcrF family IHE41_22795 PF13533 Biotin-lipoyl like IHE41_22800 PF13091 PLD-like domain IHE41_22825 PF09278 MerR, DNA binding IHE41_22825 PF00376 MerR family regulatory protein IHE41_22835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_22835 PF03466 LysR substrate binding domain IHE41_22845 PF13378 Enolase C-terminal domain-like IHE41_22845 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain IHE41_22850 PF00679 Elongation factor G C-terminus IHE41_22850 PF14492 Elongation Factor G, domain II IHE41_22850 PF00009 Elongation factor Tu GTP binding domain IHE41_22850 PF03764 Elongation factor G, domain IV IHE41_22850 PF03144 Elongation factor Tu domain 2 IHE41_22875 PF02001 Protein of unknown function DUF134 IHE41_22880 PF17185 NlpE C-terminal OB domain IHE41_22880 PF04170 NlpE N-terminal domain IHE41_22885 PF06629 MltA-interacting protein MipA IHE41_22895 PF00691 OmpA family IHE41_22895 PF01389 OmpA-like transmembrane domain IHE41_22900 PF03466 LysR substrate binding domain IHE41_22900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_22920 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family IHE41_22920 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain IHE41_22930 PF00857 Isochorismatase family IHE41_22940 PF00199 Catalase IHE41_22940 PF06628 Catalase-related immune-responsive IHE41_22950 PF08220 DeoR-like helix-turn-helix domain IHE41_22950 PF00455 DeoR C terminal sensor domain IHE41_22955 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IHE41_22960 PF01625 Peptide methionine sulfoxide reductase IHE41_22960 PF01641 SelR domain IHE41_22970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_22970 PF03466 LysR substrate binding domain IHE41_22985 PF03060 Nitronate monooxygenase IHE41_22990 PF00149 Calcineurin-like phosphoesterase IHE41_22990 PF02872 5'-nucleotidase, C-terminal domain IHE41_23000 PF08359 YsiA-like protein, C-terminal region IHE41_23000 PF00440 Bacterial regulatory proteins, tetR family IHE41_23015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_23015 PF03466 LysR substrate binding domain IHE41_23020 PF01810 LysE type translocator IHE41_23035 PF00118 TCP-1/cpn60 chaperonin family IHE41_23040 PF00166 Chaperonin 10 Kd subunit IHE41_23045 PF00581 Rhodanese-like domain IHE41_23070 PF01070 FMN-dependent dehydrogenase IHE41_23090 PF00669 Bacterial flagellin N-terminal helical region IHE41_23095 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IHE41_23095 PF00460 Flagella basal body rod protein IHE41_23100 PF10135 Rod binding protein IHE41_23100 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase IHE41_23105 PF02119 Flagellar P-ring protein IHE41_23110 PF02107 Flagellar L-ring protein IHE41_23115 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IHE41_23115 PF00460 Flagella basal body rod protein IHE41_23120 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IHE41_23120 PF00460 Flagella basal body rod protein IHE41_23125 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IHE41_23125 PF00460 Flagella basal body rod protein IHE41_23125 PF07559 Flagellar basal body protein FlaE IHE41_23130 PF13861 FlgD Tudor-like domain IHE41_23130 PF03963 Flagellar hook capping protein - N-terminal region IHE41_23130 PF13860 FlgD Ig-like domain IHE41_23135 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IHE41_23135 PF00460 Flagella basal body rod protein IHE41_23140 PF00460 Flagella basal body rod protein IHE41_23160 PF01464 Transglycosylase SLT domain IHE41_23165 PF08264 Anticodon-binding domain of tRNA IHE41_23165 PF00133 tRNA synthetases class I (I, L, M and V) IHE41_23185 PF03313 Serine dehydratase alpha chain IHE41_23185 PF03315 Serine dehydratase beta chain IHE41_23190 PF00854 POT family IHE41_23200 PF03466 LysR substrate binding domain IHE41_23200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_23210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_23210 PF03466 LysR substrate binding domain IHE41_23215 PF00691 OmpA family IHE41_23215 PF01389 OmpA-like transmembrane domain IHE41_23220 PF18027 Cytosolic carboxypeptidase N-terminal domain IHE41_23220 PF00246 Zinc carboxypeptidase IHE41_23225 PF01266 FAD dependent oxidoreductase IHE41_23230 PF04393 Protein of unknown function (DUF535) IHE41_23245 PF00392 Bacterial regulatory proteins, gntR family IHE41_23245 PF07702 UTRA domain IHE41_23250 PF00528 Binding-protein-dependent transport system inner membrane component IHE41_23255 PF00005 ABC transporter IHE41_23270 PF00266 Aminotransferase class-V IHE41_23275 PF00202 Aminotransferase class-III IHE41_23280 PF13419 Haloacid dehalogenase-like hydrolase IHE41_23285 PF00356 Bacterial regulatory proteins, lacI family IHE41_23290 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IHE41_23300 PF03611 PTS system sugar-specific permease component IHE41_23310 PF05922 Peptidase inhibitor I9 IHE41_23310 PF00082 Subtilase family IHE41_23315 PF00657 GDSL-like Lipase/Acylhydrolase IHE41_23320 PF02321 Outer membrane efflux protein IHE41_23325 PF00005 ABC transporter IHE41_23325 PF02687 FtsX-like permease family IHE41_23325 PF12704 MacB-like periplasmic core domain IHE41_23330 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IHE41_23335 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) IHE41_23340 PF00194 Eukaryotic-type carbonic anhydrase IHE41_23345 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) IHE41_23360 PF13419 Haloacid dehalogenase-like hydrolase IHE41_23365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_23365 PF03466 LysR substrate binding domain IHE41_23400 PF12464 Maltose acetyltransferase IHE41_23400 PF14602 Hexapeptide repeat of succinyl-transferase IHE41_23405 PF02566 OsmC-like protein IHE41_23410 PF01625 Peptide methionine sulfoxide reductase IHE41_23410 PF01641 SelR domain IHE41_23425 PF04244 Deoxyribodipyrimidine photo-lyase-related protein IHE41_23430 PF03441 FAD binding domain of DNA photolyase IHE41_23430 PF00875 DNA photolyase IHE41_23435 PF00990 Diguanylate cyclase, GGDEF domain IHE41_23450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IHE41_23450 PF00672 HAMP domain IHE41_23450 PF12729 Four helix bundle sensory module for signal transduction IHE41_23455 PF05230 MASE2 domain IHE41_23455 PF00990 Diguanylate cyclase, GGDEF domain IHE41_23460 PF13532 2OG-Fe(II) oxygenase superfamily IHE41_23470 PF07670 Nucleoside recognition IHE41_23470 PF01773 Na+ dependent nucleoside transporter N-terminus IHE41_23470 PF07662 Na+ dependent nucleoside transporter C-terminus IHE41_23485 PF01212 Beta-eliminating lyase IHE41_23495 PF01266 FAD dependent oxidoreductase IHE41_23510 PF05525 Branched-chain amino acid transport protein IHE41_23515 PF00990 Diguanylate cyclase, GGDEF domain IHE41_23515 PF08448 PAS fold IHE41_23520 PF02954 Bacterial regulatory protein, Fis family IHE41_23520 PF00072 Response regulator receiver domain IHE41_23520 PF00158 Sigma-54 interaction domain IHE41_23525 PF00512 His Kinase A (phospho-acceptor) domain IHE41_23525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_23525 PF02743 Cache domain IHE41_23530 PF00232 Glycosyl hydrolase family 1 IHE41_23555 PF03466 LysR substrate binding domain IHE41_23555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IHE41_23560 PF08443 RimK-like ATP-grasp domain IHE41_23560 PF18030 RimK PreATP-grasp domain IHE41_23565 PF08443 RimK-like ATP-grasp domain IHE41_23565 PF18030 RimK PreATP-grasp domain IHE41_23570 PF00753 Metallo-beta-lactamase superfamily IHE41_23575 PF17944 Arginine decarboxylase C-terminal helical extension IHE41_23575 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain IHE41_23575 PF17810 Arginine decarboxylase helical bundle domain IHE41_23580 PF00491 Arginase family IHE41_23585 PF07690 Major Facilitator Superfamily IHE41_23590 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain IHE41_23590 PF00326 Prolyl oligopeptidase family IHE41_23605 PF00950 ABC 3 transport family IHE41_23610 PF00005 ABC transporter IHE41_23615 PF01297 Zinc-uptake complex component A periplasmic IHE41_23655 PF02472 Biopolymer transport protein ExbD/TolR IHE41_23660 PF01618 MotA/TolQ/ExbB proton channel family IHE41_23665 PF01618 MotA/TolQ/ExbB proton channel family IHE41_23675 PF00593 TonB dependent receptor IHE41_23675 PF07715 TonB-dependent Receptor Plug Domain IHE41_23680 PF16750 Sensor domain of 2-component histidine kinase IHE41_23680 PF00512 His Kinase A (phospho-acceptor) domain IHE41_23680 PF00672 HAMP domain IHE41_23680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IHE41_23685 PF00072 Response regulator receiver domain IHE41_23685 PF00486 Transcriptional regulatory protein, C terminal IHE41_23690 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain IHE41_23690 PF00056 lactate/malate dehydrogenase, NAD binding domain IHE41_23695 PF03009 Glycerophosphoryl diester phosphodiesterase family IHE41_23705 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IHE41_23705 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IHE41_23710 PF10928 Protein of unknown function (DUF2810)