locus-tag class description IF561_00005 PF00154 recA bacterial DNA recombination protein IF561_00010 PF02631 RecX family IF561_00015 PF02272 DHHA1 domain IF561_00015 PF01411 tRNA synthetases class II (A) IF561_00015 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IF561_00020 PF01842 ACT domain IF561_00020 PF13840 ACT domain IF561_00020 PF00696 Amino acid kinase family IF561_00025 PF02599 Global regulator protein family IF561_00085 PF04277 Oxaloacetate decarboxylase, gamma chain IF561_00090 PF00364 Biotin-requiring enzyme IF561_00090 PF00682 HMGL-like IF561_00090 PF02436 Conserved carboxylase domain IF561_00095 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit IF561_00100 PF00107 Zinc-binding dehydrogenase IF561_00100 PF08240 Alcohol dehydrogenase GroES-like domain IF561_00105 PF09335 SNARE associated Golgi protein IF561_00110 PF05193 Peptidase M16 inactive domain IF561_00110 PF00675 Insulinase (Peptidase family M16) IF561_00115 PF04262 Glutamate-cysteine ligase IF561_00125 PF02664 S-Ribosylhomocysteinase (LuxS) IF561_00130 PF00571 CBS domain IF561_00130 PF03471 Transporter associated domain IF561_00130 PF01595 Cyclin M transmembrane N-terminal domain IF561_00135 PF01578 Cytochrome C assembly protein IF561_00140 PF02881 SRP54-type protein, helical bundle domain IF561_00140 PF00448 SRP54-type protein, GTPase domain IF561_00140 PF02978 Signal peptide binding domain IF561_00145 PF00886 Ribosomal protein S16 IF561_00150 PF05239 PRC-barrel domain IF561_00150 PF01782 RimM N-terminal domain IF561_00155 PF01746 tRNA (Guanine-1)-methyltransferase IF561_00160 PF01245 Ribosomal protein L19 IF561_00165 PF03884 DNA gyrase inhibitor YacG IF561_00170 PF07072 Cell division protein IF561_00175 PF01121 Dephospho-CoA kinase IF561_00180 PF01478 Type IV leader peptidase family IF561_00180 PF06750 Bacterial Peptidase A24 N-terminal domain IF561_00185 PF00482 Type II secretion system (T2SS), protein F IF561_00190 PF00437 Type II/IV secretion system protein IF561_00190 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain IF561_00195 PF07963 Prokaryotic N-terminal methylation motif IF561_00195 PF00114 Pilin (bacterial filament) IF561_00200 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain IF561_00200 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain IF561_00205 PF01510 N-acetylmuramoyl-L-alanine amidase IF561_00210 PF07729 FCD domain IF561_00210 PF00392 Bacterial regulatory proteins, gntR family IF561_00215 PF17831 Pyruvate dehydrogenase E1 component middle domain IF561_00215 PF00456 Transketolase, thiamine diphosphate binding domain IF561_00220 PF02817 e3 binding domain IF561_00220 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IF561_00220 PF00364 Biotin-requiring enzyme IF561_00225 PF07992 Pyridine nucleotide-disulphide oxidoreductase IF561_00225 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IF561_00230 PF00440 Bacterial regulatory proteins, tetR family IF561_00235 PF00156 Phosphoribosyl transferase domain IF561_00240 PF00484 Carbonic anhydrase IF561_00245 PF01740 STAS domain IF561_00245 PF00916 Sulfate permease family IF561_00250 PF00005 ABC transporter IF561_00255 PF01061 ABC-2 type transporter IF561_00260 PF03279 Bacterial lipid A biosynthesis acyltransferase IF561_00265 PF02569 Pantoate-beta-alanine ligase IF561_00270 PF02548 Ketopantoate hydroxymethyltransferase IF561_00275 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) IF561_00280 PF12627 Probable RNA and SrmB- binding site of polymerase A IF561_00280 PF12626 Polymerase A arginine-rich C-terminus IF561_00280 PF01743 Poly A polymerase head domain IF561_00285 PF00749 tRNA synthetases class I (E and Q), catalytic domain IF561_00290 PF01258 Prokaryotic dksA/traR C4-type zinc finger IF561_00295 PF03749 Sugar fermentation stimulation protein RE domain IF561_00295 PF17746 SfsA N-terminal OB domain IF561_00300 PF04408 Helicase associated domain (HA2) IF561_00300 PF00271 Helicase conserved C-terminal domain IF561_00300 PF08482 ATP-dependent helicase C-terminal IF561_00300 PF00270 DEAD/DEAH box helicase IF561_00305 PF00912 Transglycosylase IF561_00305 PF14814 Bifunctional transglycosylase second domain IF561_00305 PF00905 Penicillin binding protein transpeptidase domain IF561_00310 PF01734 Patatin-like phospholipase IF561_00315 PF11791 Aconitate B N-terminal domain IF561_00315 PF00330 Aconitase family (aconitate hydratase) IF561_00315 PF06434 Aconitate hydratase 2 N-terminus IF561_00320 PF06062 Uncharacterised protein family (UPF0231) IF561_00325 PF00543 Nitrogen regulatory protein P-II IF561_00330 PF00909 Ammonium Transporter Family IF561_00335 PF13416 Bacterial extracellular solute-binding protein IF561_00345 PF00005 ABC transporter IF561_00345 PF08402 TOBE domain IF561_00350 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IF561_00350 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IF561_00350 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IF561_00350 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IF561_00355 PF06165 Glycosyltransferase family 36 IF561_00355 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain IF561_00360 PF02838 Glycosyl hydrolase family 20, domain 2 IF561_00360 PF00728 Glycosyl hydrolase family 20, catalytic domain IF561_00365 PF01869 BadF/BadG/BcrA/BcrD ATPase family IF561_00375 PF00005 ABC transporter IF561_00375 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IF561_00380 PF00005 ABC transporter IF561_00380 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IF561_00385 PF00528 Binding-protein-dependent transport system inner membrane component IF561_00385 PF12911 N-terminal TM domain of oligopeptide transport permease C IF561_00390 PF00528 Binding-protein-dependent transport system inner membrane component IF561_00395 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IF561_00400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_00400 PF00497 Bacterial extracellular solute-binding proteins, family 3 IF561_00400 PF00072 Response regulator receiver domain IF561_00400 PF00512 His Kinase A (phospho-acceptor) domain IF561_00405 PF08468 Methyltransferase small domain N-terminal IF561_00405 PF05175 Methyltransferase small domain IF561_00410 PF01594 AI-2E family transporter IF561_00420 PF00202 Aminotransferase class-III IF561_00425 PF01521 Iron-sulphur cluster biosynthesis IF561_00435 PF00873 AcrB/AcrD/AcrF family IF561_00440 PF01476 LysM domain IF561_00440 PF08525 Opacity-associated protein A N-terminal motif IF561_00440 PF01551 Peptidase family M23 IF561_00445 PF00579 tRNA synthetases class I (W and Y) IF561_00455 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family IF561_00460 PF13609 Gram-negative porin IF561_00465 PF01272 Transcription elongation factor, GreA/GreB, C-term IF561_00465 PF03449 Transcription elongation factor, N-terminal IF561_00470 PF01985 CRS1 / YhbY (CRM) domain IF561_00475 PF01728 FtsJ-like methyltransferase IF561_00480 PF01434 Peptidase family M41 IF561_00480 PF06480 FtsH Extracellular IF561_00480 PF17862 AAA+ lid domain IF561_00480 PF00004 ATPase family associated with various cellular activities (AAA) IF561_00485 PF00809 Pterin binding enzyme IF561_00490 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IF561_00490 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IF561_00490 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IF561_00490 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IF561_00495 PF03840 Preprotein translocase SecG subunit IF561_00510 PF17384 RimP C-terminal SH3 domain IF561_00510 PF02576 RimP N-terminal domain IF561_00515 PF08529 NusA N-terminal domain IF561_00515 PF13184 NusA-like KH domain IF561_00515 PF00575 S1 RNA binding domain IF561_00520 PF11987 Translation-initiation factor 2 IF561_00520 PF08364 Bacterial translation initiation factor IF-2 associated region IF561_00520 PF00009 Elongation factor Tu GTP binding domain IF561_00520 PF04760 Translation initiation factor IF-2, N-terminal region IF561_00525 PF02033 Ribosome-binding factor A IF561_00530 PF09157 Pseudouridine synthase II TruB, C-terminal IF561_00530 PF16198 tRNA pseudouridylate synthase B C-terminal domain IF561_00530 PF01509 TruB family pseudouridylate synthase (N terminal domain) IF561_00535 PF00312 Ribosomal protein S15 IF561_00540 PF00013 KH domain IF561_00540 PF00575 S1 RNA binding domain IF561_00540 PF03725 3' exoribonuclease family, domain 2 IF561_00540 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain IF561_00540 PF01138 3' exoribonuclease family, domain 1 IF561_00545 PF13181 Tetratricopeptide repeat IF561_00545 PF07719 Tetratricopeptide repeat IF561_00555 PF01554 MatE IF561_00560 PF01136 Peptidase family U32 IF561_00565 PF01136 Peptidase family U32 IF561_00570 PF03707 Bacterial signalling protein N terminal repeat IF561_00570 PF00990 Diguanylate cyclase, GGDEF domain IF561_00570 PF00563 EAL domain IF561_00575 PF02036 SCP-2 sterol transfer family IF561_00580 PF13508 Acetyltransferase (GNAT) domain IF561_00600 PF16658 Class II release factor RF3, C-terminal domain IF561_00600 PF03144 Elongation factor Tu domain 2 IF561_00600 PF00009 Elongation factor Tu GTP binding domain IF561_00610 PF01026 TatD related DNase IF561_00615 PF07662 Na+ dependent nucleoside transporter C-terminus IF561_00615 PF01773 Na+ dependent nucleoside transporter N-terminus IF561_00615 PF07670 Nucleoside recognition IF561_00620 PF01791 DeoC/LacD family aldolase IF561_00625 PF02885 Glycosyl transferase family, helical bundle domain IF561_00625 PF00591 Glycosyl transferase family, a/b domain IF561_00625 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain IF561_00630 PF01676 Metalloenzyme superfamily IF561_00635 PF01048 Phosphorylase superfamily IF561_00645 PF18429 Domain of unknown function (DUF5609) IF561_00655 PF18073 Rubredoxin metal binding domain IF561_00660 PF00679 Elongation factor G C-terminus IF561_00660 PF14492 Elongation Factor G, domain II IF561_00660 PF03144 Elongation factor Tu domain 2 IF561_00660 PF00009 Elongation factor Tu GTP binding domain IF561_00660 PF03764 Elongation factor G, domain IV IF561_00665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_00665 PF03466 LysR substrate binding domain IF561_00675 PF00501 AMP-binding enzyme IF561_00680 PF12833 Helix-turn-helix domain IF561_00680 PF02805 Metal binding domain of Ada IF561_00705 PF04972 BON domain IF561_00705 PF13629 Pilus formation protein N terminal region IF561_00705 PF00263 Bacterial type II and III secretion system protein IF561_00735 PF00437 Type II/IV secretion system protein IF561_00765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_00765 PF03466 LysR substrate binding domain IF561_00770 PF13520 Amino acid permease IF561_00775 PF04074 YhcH/YjgK/YiaL IF561_00780 PF02929 Beta galactosidase small chain IF561_00780 PF16353 Domain of unknown function(DUF4981) IF561_00780 PF00703 Glycosyl hydrolases family 2 IF561_00780 PF02837 Glycosyl hydrolases family 2, sugar binding domain IF561_00780 PF02836 Glycosyl hydrolases family 2, TIM barrel domain IF561_00785 PF00356 Bacterial regulatory proteins, lacI family IF561_00790 PF16363 GDP-mannose 4,6 dehydratase IF561_00795 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain IF561_00795 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain IF561_00800 PF00288 GHMP kinases N terminal domain IF561_00800 PF08544 GHMP kinases C terminal IF561_00800 PF10509 Galactokinase galactose-binding signature IF561_00805 PF01263 Aldose 1-epimerase IF561_00810 PF00356 Bacterial regulatory proteins, lacI family IF561_00825 PF00356 Bacterial regulatory proteins, lacI family IF561_00830 PF01588 Putative tRNA binding domain IF561_00850 PF01544 CorA-like Mg2+ transporter protein IF561_00855 PF16901 C-terminal domain of alpha-glycerophosphate oxidase IF561_00855 PF01266 FAD dependent oxidoreductase IF561_00860 PF08220 DeoR-like helix-turn-helix domain IF561_00860 PF00455 DeoR C terminal sensor domain IF561_00865 PF02782 FGGY family of carbohydrate kinases, C-terminal domain IF561_00865 PF00370 FGGY family of carbohydrate kinases, N-terminal domain IF561_00870 PF00230 Major intrinsic protein IF561_00875 PF07690 Major Facilitator Superfamily IF561_00880 PF03009 Glycerophosphoryl diester phosphodiesterase family IF561_00885 PF14602 Hexapeptide repeat of succinyl-transferase IF561_00885 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle IF561_00890 PF07130 YebG protein IF561_00895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_00895 PF03466 LysR substrate binding domain IF561_00905 PF00884 Sulfatase IF561_00905 PF11893 Domain of unknown function (DUF3413) IF561_00910 PF17946 RecC C-terminal domain IF561_00915 PF13361 UvrD-like helicase C-terminal domain IF561_00915 PF00580 UvrD/REP helicase N-terminal domain IF561_00915 PF12705 PD-(D/E)XK nuclease superfamily IF561_00920 PF13538 UvrD-like helicase C-terminal domain IF561_00930 PF00583 Acetyltransferase (GNAT) family IF561_00930 PF00696 Amino acid kinase family IF561_00940 PF03562 MltA specific insert domain IF561_00940 PF06725 3D domain IF561_00945 PF00899 ThiF family IF561_00950 PF02657 Fe-S metabolism associated domain IF561_00955 PF17158 Membrane-associated sensor, integral membrane domain IF561_00955 PF00990 Diguanylate cyclase, GGDEF domain IF561_00960 PF00266 Aminotransferase class-V IF561_00965 PF01965 DJ-1/PfpI family IF561_00970 PF02558 Ketopantoate reductase PanE/ApbA IF561_00970 PF08546 Ketopantoate reductase PanE/ApbA C terminal IF561_00975 PF03502 Nucleoside-specific channel-forming protein, Tsx IF561_00995 PF04545 Sigma-70, region 4 IF561_00995 PF04542 Sigma-70 region 2 IF561_01005 PF07690 Major Facilitator Superfamily IF561_01010 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD IF561_01015 PF03923 Uncharacterized lipoprotein IF561_01015 PF08139 Prokaryotic membrane lipoprotein lipid attachment site IF561_01020 PF05175 Methyltransferase small domain IF561_01025 PF01722 BolA-like protein IF561_01030 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) IF561_01030 PF11973 NQRA C-terminal domain IF561_01035 PF03116 NQR2, RnfD, RnfE family IF561_01040 PF04205 FMN-binding domain IF561_01045 PF02508 Rnf-Nqr subunit, membrane protein IF561_01050 PF02508 Rnf-Nqr subunit, membrane protein IF561_01055 PF00970 Oxidoreductase FAD-binding domain IF561_01055 PF00111 2Fe-2S iron-sulfur cluster binding domain IF561_01055 PF00175 Oxidoreductase NAD-binding domain IF561_01060 PF02424 ApbE family IF561_01075 PF11799 impB/mucB/samB family C-terminal domain IF561_01075 PF00817 impB/mucB/samB family IF561_01075 PF11798 IMS family HHH motif IF561_01080 PF00270 DEAD/DEAH box helicase IF561_01080 PF00271 Helicase conserved C-terminal domain IF561_01080 PF00570 HRDC domain IF561_01080 PF16124 RecQ zinc-binding IF561_01080 PF09382 RQC domain IF561_01085 PF03449 Transcription elongation factor, N-terminal IF561_01085 PF01272 Transcription elongation factor, GreA/GreB, C-term IF561_01100 PF00209 Sodium:neurotransmitter symporter family IF561_01110 PF06786 Uncharacterised protein family (UPF0253) IF561_01120 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IF561_01120 PF04073 Aminoacyl-tRNA editing domain IF561_01120 PF03129 Anticodon binding domain IF561_01125 PF01980 tRNA-methyltransferase O IF561_01125 PF18389 TrmO C-terminal domain IF561_01130 PF01197 Ribosomal protein L31 IF561_01135 PF00444 Ribosomal protein L36 IF561_01140 PF03806 AbgT putative transporter family IF561_01145 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 IF561_01170 PF04287 tRNA pseudouridine synthase C IF561_01175 PF00849 RNA pseudouridylate synthase IF561_01180 PF11944 Protein of unknown function (DUF3461) IF561_01185 PF01909 Nucleotidyltransferase domain IF561_01185 PF08335 GlnD PII-uridylyltransferase IF561_01185 PF01966 HD domain IF561_01185 PF01842 ACT domain IF561_01190 PF00557 Metallopeptidase family M24 IF561_01195 PF00318 Ribosomal protein S2 IF561_01200 PF00889 Elongation factor TS IF561_01205 PF00696 Amino acid kinase family IF561_01210 PF01765 Ribosome recycling factor IF561_01215 PF01255 Putative undecaprenyl diphosphate synthase IF561_01225 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain IF561_01225 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase IF561_01225 PF13288 DXP reductoisomerase C-terminal domain IF561_01230 PF17820 PDZ domain IF561_01230 PF02163 Peptidase family M50 IF561_01235 PF07244 Surface antigen variable number repeat IF561_01235 PF01103 Surface antigen IF561_01240 PF03938 Outer membrane protein (OmpH-like) IF561_01245 PF00132 Bacterial transferase hexapeptide (six repeats) IF561_01245 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD IF561_01250 PF07977 FabA-like domain IF561_01255 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 IF561_01255 PF00132 Bacterial transferase hexapeptide (six repeats) IF561_01260 PF02684 Lipid-A-disaccharide synthetase IF561_01265 PF01351 Ribonuclease HII IF561_01270 PF01336 OB-fold nucleic acid binding domain IF561_01270 PF14579 Helix-hairpin-helix motif IF561_01270 PF02811 PHP domain IF561_01270 PF07733 Bacterial DNA polymerase III alpha NTPase domain IF561_01270 PF17657 Bacterial DNA polymerase III alpha subunit finger domain IF561_01275 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit IF561_01280 PF01171 PP-loop family IF561_01280 PF09179 TilS substrate binding domain IF561_01280 PF11734 TilS substrate C-terminal domain IF561_01285 PF00034 Cytochrome c IF561_01290 PF00543 Nitrogen regulatory protein P-II IF561_01295 PF03372 Endonuclease/Exonuclease/phosphatase family IF561_01305 PF01476 LysM domain IF561_01305 PF01464 Transglycosylase SLT domain IF561_01310 PF16123 Hydroxyacylglutathione hydrolase C-terminus IF561_01310 PF00753 Metallo-beta-lactamase superfamily IF561_01315 PF08241 Methyltransferase domain IF561_01320 PF00075 RNase H IF561_01325 PF00929 Exonuclease IF561_01340 PF00583 Acetyltransferase (GNAT) family IF561_01345 PF00916 Sulfate permease family IF561_01345 PF01740 STAS domain IF561_01350 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IF561_01350 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IF561_01350 PF02770 Acyl-CoA dehydrogenase, middle domain IF561_01350 PF09317 Domain of unknown function (DUF1974) IF561_01355 PF13580 SIS domain IF561_01360 PF13230 Glutamine amidotransferases class-II IF561_01365 PF00551 Formyl transferase IF561_01370 PF02769 AIR synthase related protein, C-terminal domain IF561_01370 PF00586 AIR synthase related protein, N-terminal domain IF561_01380 PF00860 Permease family IF561_01395 PF03358 NADPH-dependent FMN reductase IF561_01400 PF03960 ArsC family IF561_01405 PF01435 Peptidase family M48 IF561_01405 PF13181 Tetratricopeptide repeat IF561_01415 PF01594 AI-2E family transporter IF561_01420 PF00578 AhpC/TSA family IF561_01435 PF00990 Diguanylate cyclase, GGDEF domain IF561_01435 PF00563 EAL domain IF561_01435 PF13426 PAS domain IF561_01545 PF00771 FHIPEP family IF561_01550 PF01312 FlhB HrpN YscU SpaS Family IF561_01580 PF00486 Transcriptional regulatory protein, C terminal IF561_01595 PF00813 FliP family IF561_01610 PF00263 Bacterial type II and III secretion system protein IF561_01610 PF03958 Bacterial type II/III secretion system short domain IF561_01615 PF02874 ATP synthase alpha/beta family, beta-barrel domain IF561_01615 PF18269 T3SS EscN ATPase C-terminal domain IF561_01615 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IF561_01670 PF00892 EamA-like transporter family IF561_01685 PF13402 Peptidase M60, enhancin and enhancin-like IF561_01685 PF17291 N-terminal domain of M60-like peptidases IF561_01685 PF13322 Domain of unknown function (DUF4092) IF561_01690 PF00816 H-NS histone family IF561_01700 PF03347 Vibrio thermostable direct hemolysin IF561_01705 PF12833 Helix-turn-helix domain IF561_01710 PF00005 ABC transporter IF561_01715 PF00005 ABC transporter IF561_01715 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IF561_01720 PF12911 N-terminal TM domain of oligopeptide transport permease C IF561_01720 PF00528 Binding-protein-dependent transport system inner membrane component IF561_01725 PF00528 Binding-protein-dependent transport system inner membrane component IF561_01730 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IF561_01735 PF01774 UreD urease accessory protein IF561_01740 PF00547 Urease, gamma subunit IF561_01745 PF00699 Urease beta subunit IF561_01750 PF00449 Urease alpha-subunit, N-terminal domain IF561_01750 PF01979 Amidohydrolase family IF561_01755 PF05194 UreE urease accessory protein, C-terminal domain IF561_01755 PF02814 UreE urease accessory protein, N-terminal domain IF561_01760 PF01730 UreF IF561_01765 PF02492 CobW/HypB/UreG, nucleotide-binding domain IF561_01820 PF00578 AhpC/TSA family IF561_01850 PF01842 ACT domain IF561_01855 PF00701 Dihydrodipicolinate synthetase family IF561_01860 PF06804 NlpB/DapX lipoprotein IF561_01875 PF07687 Peptidase dimerisation domain IF561_01875 PF01546 Peptidase family M20/M25/M40 IF561_01880 PF03960 ArsC family IF561_01900 PF11143 Protein of unknown function (DUF2919) IF561_01905 PF04261 Dyp-type peroxidase family IF561_01910 PF00700 Bacterial flagellin C-terminal helical region IF561_01910 PF00669 Bacterial flagellin N-terminal helical region IF561_01910 PF07196 Flagellin hook IN motif IF561_01915 PF00700 Bacterial flagellin C-terminal helical region IF561_01915 PF07196 Flagellin hook IN motif IF561_01915 PF00669 Bacterial flagellin N-terminal helical region IF561_01920 PF00700 Bacterial flagellin C-terminal helical region IF561_01920 PF07196 Flagellin hook IN motif IF561_01920 PF00669 Bacterial flagellin N-terminal helical region IF561_01925 PF03646 FlaG protein IF561_01930 PF07196 Flagellin hook IN motif IF561_01930 PF07195 Flagellar hook-associated protein 2 C-terminus IF561_01930 PF02465 Flagellar hook-associated protein 2 N-terminus IF561_01940 PF02561 Flagellar protein FliS IF561_01945 PF00158 Sigma-54 interaction domain IF561_01945 PF02954 Bacterial regulatory protein, Fis family IF561_01945 PF06490 Flagellar regulatory protein FleQ IF561_01950 PF13188 PAS domain IF561_01950 PF00512 His Kinase A (phospho-acceptor) domain IF561_01950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_01955 PF02954 Bacterial regulatory protein, Fis family IF561_01955 PF00158 Sigma-54 interaction domain IF561_01955 PF00072 Response regulator receiver domain IF561_01960 PF02049 Flagellar hook-basal body complex protein FliE IF561_01965 PF01514 Secretory protein of YscJ/FliF family IF561_01965 PF08345 Flagellar M-ring protein C-terminal IF561_01970 PF01706 FliG C-terminal domain IF561_01970 PF14841 FliG middle domain IF561_01970 PF14842 FliG N-terminal domain IF561_01980 PF18269 T3SS EscN ATPase C-terminal domain IF561_01980 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IF561_02000 PF02154 Flagellar motor switch protein FliM IF561_02000 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term IF561_02005 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term IF561_02010 PF04347 Flagellar biosynthesis protein, FliO IF561_02015 PF00813 FliP family IF561_02020 PF01313 Bacterial export proteins, family 3 IF561_02025 PF01311 Bacterial export proteins, family 1 IF561_02030 PF01312 FlhB HrpN YscU SpaS Family IF561_02035 PF00771 FHIPEP family IF561_02040 PF00448 SRP54-type protein, GTPase domain IF561_02045 PF10609 NUBPL iron-transfer P-loop NTPase IF561_02050 PF04545 Sigma-70, region 4 IF561_02050 PF04539 Sigma-70 region 3 IF561_02050 PF04542 Sigma-70 region 2 IF561_02055 PF00072 Response regulator receiver domain IF561_02060 PF04344 Chemotaxis phosphatase, CheZ IF561_02065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_02065 PF02895 Signal transducing histidine kinase, homodimeric domain IF561_02065 PF01584 CheW-like domain IF561_02065 PF00072 Response regulator receiver domain IF561_02065 PF01627 Hpt domain IF561_02070 PF01339 CheB methylesterase IF561_02070 PF00072 Response regulator receiver domain IF561_02075 PF13614 AAA domain IF561_02085 PF01584 CheW-like domain IF561_02095 PF00005 ABC transporter IF561_02100 PF03379 CcmB protein IF561_02105 PF01578 Cytochrome C assembly protein IF561_02110 PF04995 Heme exporter protein D (CcmD) IF561_02115 PF03100 CcmE IF561_02120 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal IF561_02120 PF01578 Cytochrome C assembly protein IF561_02125 PF08534 Redoxin IF561_02130 PF03918 Cytochrome C biogenesis protein IF561_02140 PF04333 MlaA lipoprotein IF561_02145 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) IF561_02150 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) IF561_02160 PF04542 Sigma-70 region 2 IF561_02160 PF08281 Sigma-70, region 4 IF561_02165 PF02803 Thiolase, C-terminal domain IF561_02165 PF00108 Thiolase, N-terminal domain IF561_02170 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IF561_02170 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IF561_02170 PF00378 Enoyl-CoA hydratase/isomerase IF561_02180 PF00675 Insulinase (Peptidase family M16) IF561_02180 PF05193 Peptidase M16 inactive domain IF561_02180 PF16187 Middle or third domain of peptidase_M16 IF561_02185 PF00300 Histidine phosphatase superfamily (branch 1) IF561_02190 PF01713 Smr domain IF561_02195 PF05175 Methyltransferase small domain IF561_02200 PF01264 Chorismate synthase IF561_02205 PF03458 UPF0126 domain IF561_02210 PF04315 Elongation factor P hydroxylase IF561_02215 PF08891 YfcL protein IF561_02220 PF03358 NADPH-dependent FMN reductase IF561_02225 PF01266 FAD dependent oxidoreductase IF561_02225 PF05430 S-adenosyl-L-methionine-dependent methyltransferase IF561_02230 PF00109 Beta-ketoacyl synthase, N-terminal domain IF561_02230 PF02801 Beta-ketoacyl synthase, C-terminal domain IF561_02235 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IF561_02235 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IF561_02235 PF11890 Domain of unknown function (DUF3410) IF561_02240 PF02774 Semialdehyde dehydrogenase, dimerisation domain IF561_02240 PF01118 Semialdehyde dehydrogenase, NAD binding domain IF561_02250 PF01416 tRNA pseudouridine synthase IF561_02255 PF01039 Carboxyl transferase domain IF561_02255 PF17848 Acetyl-coA carboxylase zinc finger domain IF561_02260 PF02875 Mur ligase family, glutamate ligase domain IF561_02260 PF08245 Mur ligase middle domain IF561_02265 PF05036 Sporulation related domain IF561_02270 PF02674 Colicin V production protein IF561_02275 PF00156 Phosphoribosyl transferase domain IF561_02280 PF03466 LysR substrate binding domain IF561_02280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_02285 PF00072 Response regulator receiver domain IF561_02290 PF04304 Protein of unknown function (DUF454) IF561_02295 PF00156 Phosphoribosyl transferase domain IF561_02300 PF12170 DNA polymerase III tau subunit V interacting with alpha IF561_02300 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding IF561_02300 PF12169 DNA polymerase III subunits gamma and tau domain III IF561_02305 PF02575 YbaB/EbfC DNA-binding family IF561_02310 PF13662 Toprim domain IF561_02310 PF02132 RecR protein IF561_02315 PF00230 Major intrinsic protein IF561_02325 PF01042 Endoribonuclease L-PSP IF561_02330 PF03313 Serine dehydratase alpha chain IF561_02340 PF03692 Putative zinc- or iron-chelating domain IF561_02345 PF04226 Transglycosylase associated protein IF561_02350 PF03692 Putative zinc- or iron-chelating domain IF561_02355 PF05552 Conserved TM helix IF561_02355 PF00924 Mechanosensitive ion channel IF561_02360 PF03992 Antibiotic biosynthesis monooxygenase IF561_02365 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IF561_02375 PF00245 Alkaline phosphatase IF561_02390 PF13847 Methyltransferase domain IF561_02395 PF02743 Cache domain IF561_02395 PF00672 HAMP domain IF561_02395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IF561_02400 PF01263 Aldose 1-epimerase IF561_02405 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IF561_02405 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IF561_02410 PF01641 SelR domain IF561_02420 PF07023 Protein of unknown function (DUF1315) IF561_02425 PF00710 Asparaginase, N-terminal IF561_02425 PF17763 Glutaminase/Asparaginase C-terminal domain IF561_02430 PF01343 Peptidase family S49 IF561_02435 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IF561_02435 PF07992 Pyridine nucleotide-disulphide oxidoreductase IF561_02440 PF00881 Nitroreductase family IF561_02445 PF01131 DNA topoisomerase IF561_02445 PF01751 Toprim domain IF561_02455 PF00106 short chain dehydrogenase IF561_02460 PF00850 Histone deacetylase domain IF561_02470 PF11893 Domain of unknown function (DUF3413) IF561_02470 PF00884 Sulfatase IF561_02475 PF07208 Protein of unknown function (DUF1414) IF561_02480 PF04245 37-kD nucleoid-associated bacterial protein IF561_02490 PF13737 Transposase DDE domain IF561_02500 PF03553 Na+/H+ antiporter family IF561_02505 PF02774 Semialdehyde dehydrogenase, dimerisation domain IF561_02505 PF01118 Semialdehyde dehydrogenase, NAD binding domain IF561_02510 PF00027 Cyclic nucleotide-binding domain IF561_02510 PF00520 Ion transport protein IF561_02515 PF01914 MarC family integral membrane protein IF561_02520 PF00171 Aldehyde dehydrogenase family IF561_02520 PF00465 Iron-containing alcohol dehydrogenase IF561_02535 PF02777 Iron/manganese superoxide dismutases, C-terminal domain IF561_02535 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain IF561_02540 PF00462 Glutaredoxin IF561_02550 PF13726 Na+-H+ antiporter family IF561_02550 PF03553 Na+/H+ antiporter family IF561_02555 PF00929 Exonuclease IF561_02560 PF18393 MotY N-terminal domain IF561_02560 PF00691 OmpA family IF561_02565 PF10952 Protein of unknown function (DUF2753) IF561_02570 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IF561_02575 PF00730 HhH-GPD superfamily base excision DNA repair protein IF561_02575 PF00633 Helix-hairpin-helix motif IF561_02575 PF10576 Iron-sulfur binding domain of endonuclease III IF561_02580 PF02508 Rnf-Nqr subunit, membrane protein IF561_02585 PF04205 FMN-binding domain IF561_02590 PF03116 NQR2, RnfD, RnfE family IF561_02595 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit IF561_02595 PF12838 4Fe-4S dicluster domain IF561_02595 PF13375 RnfC Barrel sandwich hybrid domain IF561_02595 PF10531 SLBB domain IF561_02600 PF04060 Putative Fe-S cluster IF561_02605 PF02508 Rnf-Nqr subunit, membrane protein IF561_02615 PF17757 UvrB interaction domain IF561_02615 PF12344 Ultra-violet resistance protein B IF561_02615 PF04851 Type III restriction enzyme, res subunit IF561_02615 PF00271 Helicase conserved C-terminal domain IF561_02615 PF02151 UvrB/uvrC motif IF561_02620 PF02954 Bacterial regulatory protein, Fis family IF561_02620 PF00072 Response regulator receiver domain IF561_02620 PF00158 Sigma-54 interaction domain IF561_02625 PF01627 Hpt domain IF561_02630 PF01933 Uncharacterised protein family UPF0052 IF561_02635 PF06463 Molybdenum Cofactor Synthesis C IF561_02635 PF04055 Radical SAM superfamily IF561_02640 PF00994 Probable molybdopterin binding domain IF561_02645 PF01967 MoaC family IF561_02650 PF02597 ThiS family IF561_02655 PF02391 MoaE protein IF561_02660 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IF561_02665 PF00528 Binding-protein-dependent transport system inner membrane component IF561_02670 PF00528 Binding-protein-dependent transport system inner membrane component IF561_02670 PF12911 N-terminal TM domain of oligopeptide transport permease C IF561_02675 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IF561_02675 PF00005 ABC transporter IF561_02680 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IF561_02680 PF00005 ABC transporter IF561_02685 PF13409 Glutathione S-transferase, N-terminal domain IF561_02695 PF13194 Domain of unknown function (DUF4010) IF561_02700 PF01515 Phosphate acetyl/butaryl transferase IF561_02700 PF07085 DRTGG domain IF561_02705 PF00871 Acetokinase family IF561_02710 PF04217 Protein of unknown function, DUF412 IF561_02720 PF02653 Branched-chain amino acid transport system / permease component IF561_02725 PF00005 ABC transporter IF561_02735 PF00072 Response regulator receiver domain IF561_02735 PF00990 Diguanylate cyclase, GGDEF domain IF561_02740 PF01207 Dihydrouridine synthase (Dus) IF561_02745 PF07517 SecA DEAD-like domain IF561_02745 PF07516 SecA Wing and Scaffold domain IF561_02745 PF02810 SEC-C motif IF561_02745 PF01043 SecA preprotein cross-linking domain IF561_02750 PF02600 Disulfide bond formation protein DsbB IF561_02755 PF06450 Bacterial Na+/H+ antiporter B (NhaB) IF561_02760 PF07840 FadR C-terminal domain IF561_02760 PF00392 Bacterial regulatory proteins, gntR family IF561_02770 PF09334 tRNA synthetases class I (M) IF561_02770 PF01588 Putative tRNA binding domain IF561_02775 PF10609 NUBPL iron-transfer P-loop NTPase IF561_02780 PF00485 Phosphoribulokinase / Uridine kinase family IF561_02790 PF12557 Cob(I)alamin adenosyltransferase N terminal IF561_02790 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP IF561_02795 PF01451 Low molecular weight phosphotyrosine protein phosphatase IF561_02800 PF01740 STAS domain IF561_02800 PF00916 Sulfate permease family IF561_02805 PF12111 Polyribonucleotide phosphorylase C terminal IF561_02805 PF10150 Ribonuclease E/G family IF561_02805 PF00575 S1 RNA binding domain IF561_02810 PF00849 RNA pseudouridylate synthase IF561_02810 PF01479 S4 domain IF561_02815 PF02545 Maf-like protein IF561_02820 PF02620 Large ribosomal RNA subunit accumulation protein YceD IF561_02825 PF01783 Ribosomal L32p protein family IF561_02830 PF02504 Fatty acid synthesis protein IF561_02835 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IF561_02835 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IF561_02840 PF00698 Acyl transferase domain IF561_02850 PF00550 Phosphopantetheine attachment site IF561_02855 PF00109 Beta-ketoacyl synthase, N-terminal domain IF561_02855 PF02801 Beta-ketoacyl synthase, C-terminal domain IF561_02860 PF01063 Amino-transferase class IV IF561_02865 PF02618 YceG-like family IF561_02870 PF02223 Thymidylate kinase IF561_02875 PF09115 DNA polymerase III, delta subunit, C terminal IF561_02880 PF01026 TatD related DNase IF561_02885 PF00367 phosphotransferase system, EIIB IF561_02885 PF02378 Phosphotransferase system, EIIC IF561_02900 PF00209 Sodium:neurotransmitter symporter family IF561_02915 PF01734 Patatin-like phospholipase IF561_02920 PF00224 Pyruvate kinase, barrel domain IF561_02920 PF02887 Pyruvate kinase, alpha/beta domain IF561_02925 PF00480 ROK family IF561_02930 PF01584 CheW-like domain IF561_02930 PF00072 Response regulator receiver domain IF561_02935 PF07733 Bacterial DNA polymerase III alpha NTPase domain IF561_02935 PF17657 Bacterial DNA polymerase III alpha subunit finger domain IF561_02935 PF14579 Helix-hairpin-helix motif IF561_02935 PF02811 PHP domain IF561_02935 PF01336 OB-fold nucleic acid binding domain IF561_02950 PF00106 short chain dehydrogenase IF561_02955 PF01343 Peptidase family S49 IF561_02955 PF08496 Peptidase family S49 N-terminal IF561_02960 PF02224 Cytidylate kinase IF561_02965 PF00575 S1 RNA binding domain IF561_02970 PF00216 Bacterial DNA-binding protein IF561_02975 PF06305 Lipopolysaccharide assembly protein A domain IF561_02980 PF18073 Rubredoxin metal binding domain IF561_02985 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family IF561_02990 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IF561_03000 PF01370 NAD dependent epimerase/dehydratase family IF561_03005 PF00535 Glycosyl transferase family 2 IF561_03015 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase IF561_03025 PF02470 MlaD protein IF561_03030 PF04403 Paraquat-inducible protein A IF561_03035 PF13442 Cytochrome C oxidase, cbb3-type, subunit III IF561_03040 PF00034 Cytochrome c IF561_03045 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IF561_03045 PF00384 Molybdopterin oxidoreductase IF561_03045 PF01568 Molydopterin dinucleotide binding domain IF561_03050 PF03916 Polysulphide reductase, NrfD IF561_03055 PF13247 4Fe-4S dicluster domain IF561_03060 PF00512 His Kinase A (phospho-acceptor) domain IF561_03060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_03065 PF00072 Response regulator receiver domain IF561_03065 PF00196 Bacterial regulatory proteins, luxR family IF561_03070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_03070 PF03466 LysR substrate binding domain IF561_03080 PF02683 Cytochrome C biogenesis protein transmembrane region IF561_03080 PF11412 Disulphide bond corrector protein DsbC IF561_03085 PF00085 Thioredoxin IF561_03100 PF01938 TRAM domain IF561_03100 PF05958 tRNA (Uracil-5-)-methyltransferase IF561_03115 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IF561_03125 PF00005 ABC transporter IF561_03125 PF02687 FtsX-like permease family IF561_03125 PF12704 MacB-like periplasmic core domain IF561_03130 PF00005 ABC transporter IF561_03130 PF02687 FtsX-like permease family IF561_03130 PF12704 MacB-like periplasmic core domain IF561_03135 PF12704 MacB-like periplasmic core domain IF561_03135 PF00005 ABC transporter IF561_03135 PF02687 FtsX-like permease family IF561_03155 PF00069 Protein kinase domain IF561_03155 PF03793 PASTA domain IF561_03165 PF01810 LysE type translocator IF561_03180 PF01717 Cobalamin-independent synthase, Catalytic domain IF561_03180 PF08267 Cobalamin-independent synthase, N-terminal domain IF561_03190 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IF561_03190 PF00529 HlyD membrane-fusion protein of T1SS IF561_03195 PF03466 LysR substrate binding domain IF561_03195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_03215 PF00512 His Kinase A (phospho-acceptor) domain IF561_03215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_03215 PF00672 HAMP domain IF561_03220 PF00486 Transcriptional regulatory protein, C terminal IF561_03220 PF00072 Response regulator receiver domain IF561_03225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IF561_03225 PF00672 HAMP domain IF561_03230 PF08497 Radical SAM N-terminal IF561_03230 PF04055 Radical SAM superfamily IF561_03230 PF11842 Domain of unknown function (DUF3362) IF561_03235 PF00360 Phytochrome region IF561_03235 PF00990 Diguanylate cyclase, GGDEF domain IF561_03235 PF01590 GAF domain IF561_03235 PF00563 EAL domain IF561_03250 PF03466 LysR substrate binding domain IF561_03250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_03255 PF01717 Cobalamin-independent synthase, Catalytic domain IF561_03255 PF08267 Cobalamin-independent synthase, N-terminal domain IF561_03265 PF03795 YCII-related domain IF561_03270 PF03061 Thioesterase superfamily IF561_03275 PF04279 Intracellular septation protein A IF561_03285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_03285 PF00072 Response regulator receiver domain IF561_03290 PF17327 Acyl homoserine lactone synthase IF561_03295 PF00375 Sodium:dicarboxylate symporter family IF561_03300 PF13193 AMP-binding enzyme C-terminal domain IF561_03300 PF00501 AMP-binding enzyme IF561_03305 PF13545 Crp-like helix-turn-helix domain IF561_03305 PF00027 Cyclic nucleotide-binding domain IF561_03310 PF00290 Tryptophan synthase alpha chain IF561_03315 PF00291 Pyridoxal-phosphate dependent enzyme IF561_03320 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase IF561_03320 PF00218 Indole-3-glycerol phosphate synthase IF561_03325 PF02885 Glycosyl transferase family, helical bundle domain IF561_03325 PF00591 Glycosyl transferase family, a/b domain IF561_03330 PF00117 Glutamine amidotransferase class-I IF561_03335 PF00425 chorismate binding enzyme IF561_03335 PF04715 Anthranilate synthase component I, N terminal region IF561_03340 PF08056 Tryptophan operon leader peptide IF561_03345 PF02811 PHP domain IF561_03350 PF01300 Telomere recombination IF561_03360 PF01479 S4 domain IF561_03360 PF00849 RNA pseudouridylate synthase IF561_03365 PF04269 Protein of unknown function, DUF440 IF561_03370 PF09285 Elongation factor P, C-terminal IF561_03370 PF08207 Elongation factor P (EF-P) KOW-like domain IF561_03370 PF01132 Elongation factor P (EF-P) OB domain IF561_03380 PF03104 DNA polymerase family B, exonuclease domain IF561_03380 PF00136 DNA polymerase family B IF561_03385 PF00072 Response regulator receiver domain IF561_03385 PF00196 Bacterial regulatory proteins, luxR family IF561_03390 PF08459 UvrC Helix-hairpin-helix N-terminal IF561_03390 PF02151 UvrB/uvrC motif IF561_03390 PF01541 GIY-YIG catalytic domain IF561_03395 PF01066 CDP-alcohol phosphatidyltransferase IF561_03420 PF00202 Aminotransferase class-III IF561_03425 PF03435 Saccharopine dehydrogenase NADP binding domain IF561_03425 PF16653 Saccharopine dehydrogenase C-terminal domain IF561_03430 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain IF561_03445 PF00994 Probable molybdopterin binding domain IF561_03455 PF00268 Ribonucleotide reductase, small chain IF561_03460 PF00317 Ribonucleotide reductase, all-alpha domain IF561_03460 PF03477 ATP cone domain IF561_03460 PF02867 Ribonucleotide reductase, barrel domain IF561_03470 PF03989 DNA gyrase C-terminal domain, beta-propeller IF561_03470 PF00521 DNA gyrase/topoisomerase IV, subunit A IF561_03485 PF02335 Cytochrome c552 IF561_03495 PF13247 4Fe-4S dicluster domain IF561_03500 PF03916 Polysulphide reductase, NrfD IF561_03505 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal IF561_03505 PF01578 Cytochrome C assembly protein IF561_03510 PF08534 Redoxin IF561_03515 PF03918 Cytochrome C biogenesis protein IF561_03525 PF00925 GTP cyclohydrolase II IF561_03550 PF01471 Putative peptidoglycan binding domain IF561_03550 PF03734 L,D-transpeptidase catalytic domain IF561_03555 PF05951 Bacterial protein of unknown function (DUF882) IF561_03560 PF00753 Metallo-beta-lactamase superfamily IF561_03575 PF03480 Bacterial extracellular solute-binding protein, family 7 IF561_03585 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component IF561_03590 PF07730 Histidine kinase IF561_03590 PF17200 Single Cache domain 2 IF561_03595 PF00072 Response regulator receiver domain IF561_03595 PF00196 Bacterial regulatory proteins, luxR family IF561_03600 PF01047 MarR family IF561_03605 PF02028 BCCT, betaine/carnitine/choline family transporter IF561_03610 PF00672 HAMP domain IF561_03610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IF561_03630 PF00155 Aminotransferase class I and II IF561_03645 PF00155 Aminotransferase class I and II IF561_03645 PF00392 Bacterial regulatory proteins, gntR family IF561_03655 PF01336 OB-fold nucleic acid binding domain IF561_03655 PF00152 tRNA synthetases class II (D, K and N) IF561_03660 PF12729 Four helix bundle sensory module for signal transduction IF561_03660 PF00672 HAMP domain IF561_03660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IF561_03665 PF01242 6-pyruvoyl tetrahydropterin synthase IF561_03675 PF00563 EAL domain IF561_03675 PF04940 Sensors of blue-light using FAD IF561_03680 PF03315 Serine dehydratase beta chain IF561_03680 PF03313 Serine dehydratase alpha chain IF561_03685 PF03222 Tryptophan/tyrosine permease family IF561_03690 PF00293 NUDIX domain IF561_03700 PF00072 Response regulator receiver domain IF561_03700 PF09308 LuxQ, periplasmic IF561_03700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_03700 PF00512 His Kinase A (phospho-acceptor) domain IF561_03705 PF00425 chorismate binding enzyme IF561_03705 PF04715 Anthranilate synthase component I, N terminal region IF561_03720 PF04317 YcjX-like family, DUF463 IF561_03725 PF05128 Domain of unknown function (DUF697) IF561_03730 PF18024 Helix-turn-helix domain IF561_03730 PF00158 Sigma-54 interaction domain IF561_03735 PF13302 Acetyltransferase (GNAT) domain IF561_03750 PF13495 Phage integrase, N-terminal SAM-like domain IF561_03750 PF00589 Phage integrase family IF561_03840 PF13333 Integrase core domain IF561_03840 PF13276 HTH-like domain IF561_03840 PF00665 Integrase core domain IF561_03880 PF13276 HTH-like domain IF561_03880 PF00665 Integrase core domain IF561_03880 PF13333 Integrase core domain IF561_03965 PF13276 HTH-like domain IF561_03965 PF00665 Integrase core domain IF561_03965 PF13333 Integrase core domain IF561_04030 PF13737 Transposase DDE domain IF561_04045 PF00665 Integrase core domain IF561_04045 PF13333 Integrase core domain IF561_04045 PF13276 HTH-like domain IF561_04100 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IF561_04115 PF13333 Integrase core domain IF561_04115 PF00665 Integrase core domain IF561_04115 PF13276 HTH-like domain IF561_04150 PF00583 Acetyltransferase (GNAT) family IF561_04235 PF13614 AAA domain IF561_04310 PF00665 Integrase core domain IF561_04310 PF13333 Integrase core domain IF561_04310 PF13276 HTH-like domain IF561_04365 PF13276 HTH-like domain IF561_04365 PF00665 Integrase core domain IF561_04365 PF13333 Integrase core domain IF561_04405 PF03553 Na+/H+ antiporter family IF561_04410 PF00120 Glutamine synthetase, catalytic domain IF561_04415 PF07722 Peptidase C26 IF561_04420 PF07883 Cupin domain IF561_04420 PF01381 Helix-turn-helix IF561_04425 PF00171 Aldehyde dehydrogenase family IF561_04430 PF01266 FAD dependent oxidoreductase IF561_04435 PF00795 Carbon-nitrogen hydrolase IF561_04440 PF04371 Porphyromonas-type peptidyl-arginine deiminase IF561_04445 PF00171 Aldehyde dehydrogenase family IF561_04450 PF00202 Aminotransferase class-III IF561_04455 PF01368 DHH family IF561_04455 PF02833 DHHA2 domain IF561_04460 PF00196 Bacterial regulatory proteins, luxR family IF561_04460 PF00563 EAL domain IF561_04475 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IF561_04475 PF01411 tRNA synthetases class II (A) IF561_04475 PF02272 DHHA1 domain IF561_04480 PF12833 Helix-turn-helix domain IF561_04490 PF01047 MarR family IF561_04495 PF04237 YjbR IF561_04505 PF01928 CYTH domain IF561_04515 PF00132 Bacterial transferase hexapeptide (six repeats) IF561_04515 PF12464 Maltose acetyltransferase IF561_04530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_04530 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IF561_04530 PF00072 Response regulator receiver domain IF561_04530 PF01627 Hpt domain IF561_04530 PF00512 His Kinase A (phospho-acceptor) domain IF561_04530 PF00672 HAMP domain IF561_04535 PF00563 EAL domain IF561_04535 PF00990 Diguanylate cyclase, GGDEF domain IF561_04535 PF03707 Bacterial signalling protein N terminal repeat IF561_04550 PF04204 Homoserine O-succinyltransferase IF561_04560 PF13520 Amino acid permease IF561_04565 PF03279 Bacterial lipid A biosynthesis acyltransferase IF561_04570 PF02074 Carboxypeptidase Taq (M32) metallopeptidase IF561_04575 PF01810 LysE type translocator IF561_04585 PF01235 Sodium:alanine symporter family IF561_04610 PF00884 Sulfatase IF561_04615 PF08521 Two-component sensor kinase N-terminal IF561_04615 PF00512 His Kinase A (phospho-acceptor) domain IF561_04615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_04620 PF00072 Response regulator receiver domain IF561_04620 PF00486 Transcriptional regulatory protein, C terminal IF561_04640 PF00501 AMP-binding enzyme IF561_04650 PF04069 Substrate binding domain of ABC-type glycine betaine transport system IF561_04655 PF00528 Binding-protein-dependent transport system inner membrane component IF561_04660 PF00571 CBS domain IF561_04660 PF00005 ABC transporter IF561_04675 PF02028 BCCT, betaine/carnitine/choline family transporter IF561_04680 PF00583 Acetyltransferase (GNAT) family IF561_04685 PF00202 Aminotransferase class-III IF561_04690 PF06339 Ectoine synthase IF561_04695 PF00696 Amino acid kinase family IF561_04695 PF13840 ACT domain IF561_04700 PF00034 Cytochrome c IF561_04700 PF03150 Di-haem cytochrome c peroxidase IF561_04715 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IF561_04730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_04730 PF00989 PAS fold IF561_04730 PF17203 Single cache domain 3 IF561_04730 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain IF561_04735 PF00072 Response regulator receiver domain IF561_04735 PF12431 Transcriptional regulator IF561_04740 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain IF561_04740 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain IF561_04745 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase IF561_04750 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IF561_04750 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain IF561_04765 PF01590 GAF domain IF561_04765 PF02954 Bacterial regulatory protein, Fis family IF561_04765 PF00158 Sigma-54 interaction domain IF561_04770 PF00171 Aldehyde dehydrogenase family IF561_04790 PF12833 Helix-turn-helix domain IF561_04805 PF00263 Bacterial type II and III secretion system protein IF561_04805 PF03958 Bacterial type II/III secretion system short domain IF561_04810 PF16697 Inner membrane component of T3SS, cytoplasmic domain IF561_04810 PF16693 Inner membrane component of T3SS, periplasmic domain IF561_04820 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF IF561_04825 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) IF561_04835 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI IF561_04840 PF01514 Secretory protein of YscJ/FliF family IF561_04850 PF02108 Flagellar assembly protein FliH IF561_04860 PF02661 Fic/DOC family IF561_04895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_04895 PF03466 LysR substrate binding domain IF561_04905 PF12146 Serine aminopeptidase, S33 IF561_04910 PF12146 Serine aminopeptidase, S33 IF561_04915 PF03466 LysR substrate binding domain IF561_04915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_04920 PF01312 FlhB HrpN YscU SpaS Family IF561_04925 PF01311 Bacterial export proteins, family 1 IF561_04930 PF01313 Bacterial export proteins, family 3 IF561_04935 PF00813 FliP family IF561_04940 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term IF561_04955 PF02874 ATP synthase alpha/beta family, beta-barrel domain IF561_04955 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IF561_04955 PF18269 T3SS EscN ATPase C-terminal domain IF561_04960 PF07201 HrpJ-like domain IF561_04965 PF09059 TyeA IF561_04985 PF00771 FHIPEP family IF561_04990 PF09621 Type III secretion system regulator (LcrR) IF561_04995 PF07216 LcrG protein IF561_05000 PF04792 V antigen (LcrV) protein IF561_05005 PF07720 Tetratricopeptide repeat IF561_05015 PF05844 YopD protein IF561_05025 PF01925 Sulfite exporter TauE/SafE IF561_05030 PF01970 Tripartite tricarboxylate transporter TctA family IF561_05060 PF00285 Citrate synthase, C-terminal domain IF561_05065 PF00330 Aconitase family (aconitate hydratase) IF561_05065 PF00694 Aconitase C-terminal domain IF561_05070 PF04303 PrpF protein IF561_05075 PF13193 AMP-binding enzyme C-terminal domain IF561_05075 PF16177 Acetyl-coenzyme A synthetase N-terminus IF561_05075 PF00501 AMP-binding enzyme IF561_05085 PF00089 Trypsin IF561_05100 PF04055 Radical SAM superfamily IF561_05105 PF06508 Queuosine biosynthesis protein QueC IF561_05110 PF00990 Diguanylate cyclase, GGDEF domain IF561_05110 PF17158 Membrane-associated sensor, integral membrane domain IF561_05120 PF05736 OprF membrane domain IF561_05120 PF00691 OmpA family IF561_05135 PF00691 OmpA family IF561_05135 PF05736 OprF membrane domain IF561_05150 PF10672 S-adenosylmethionine-dependent methyltransferase IF561_05150 PF17785 PUA-like domain IF561_05155 PF02743 Cache domain IF561_05155 PF00672 HAMP domain IF561_05155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IF561_05160 PF00708 Acylphosphatase IF561_05165 PF04358 DsrC like protein IF561_05175 PF01027 Inhibitor of apoptosis-promoting Bax1 IF561_05180 PF00005 ABC transporter IF561_05185 PF00528 Binding-protein-dependent transport system inner membrane component IF561_05190 PF00528 Binding-protein-dependent transport system inner membrane component IF561_05195 PF00497 Bacterial extracellular solute-binding proteins, family 3 IF561_05200 PF10414 Sirohaem synthase dimerisation region IF561_05200 PF14824 Sirohaem biosynthesis protein central IF561_05200 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IF561_05205 PF04461 Protein of unknown function (DUF520) IF561_05210 PF00793 DAHP synthetase I family IF561_05230 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF IF561_05230 PF01189 16S rRNA methyltransferase RsmB/F IF561_05230 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF IF561_05235 PF02470 MlaD protein IF561_05240 PF04403 Paraquat-inducible protein A IF561_05245 PF00664 ABC transporter transmembrane region IF561_05245 PF00005 ABC transporter IF561_05250 PF13185 GAF domain IF561_05255 PF04352 ProQ/FINO family IF561_05255 PF17516 ProQ C-terminal domain IF561_05260 PF11818 C-terminal domain of tail specific protease (DUF3340) IF561_05260 PF00595 PDZ domain IF561_05260 PF03572 Peptidase family S41 IF561_05260 PF17804 Tail specific protease N-terminal domain IF561_05270 PF17432 Domain of unknown function (DUF3458_C) ARM repeats IF561_05270 PF11940 Domain of unknown function (DUF3458) Ig-like fold IF561_05270 PF01433 Peptidase family M1 domain IF561_05280 PF05088 Bacterial NAD-glutamate dehydrogenase IF561_05285 PF01180 Dihydroorotate dehydrogenase IF561_05290 PF07126 Cell-division protein ZapC IF561_05295 PF10672 S-adenosylmethionine-dependent methyltransferase IF561_05295 PF02926 THUMP domain IF561_05295 PF01170 Putative RNA methylase family UPF0020 IF561_05305 PF00005 ABC transporter IF561_05305 PF16326 ABC transporter C-terminal domain IF561_05305 PF12848 ABC transporter IF561_05315 PF04957 Ribosome modulation factor IF561_05320 PF07977 FabA-like domain IF561_05325 PF05362 Lon protease (S16) C-terminal proteolytic domain IF561_05325 PF13654 AAA domain IF561_05330 PF06303 MatP N-terminal domain IF561_05330 PF17414 MatP C-terminal ribbon-helix-helix domain IF561_05485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_05485 PF00512 His Kinase A (phospho-acceptor) domain IF561_05485 PF09308 LuxQ, periplasmic IF561_05485 PF00072 Response regulator receiver domain IF561_05500 PF00115 Cytochrome C and Quinol oxidase polypeptide I IF561_05515 PF13442 Cytochrome C oxidase, cbb3-type, subunit III IF561_05515 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP IF561_05525 PF00403 Heavy-metal-associated domain IF561_05540 PF13545 Crp-like helix-turn-helix domain IF561_05540 PF00027 Cyclic nucleotide-binding domain IF561_05545 PF00582 Universal stress protein family IF561_05550 PF01171 PP-loop family IF561_05570 PF00005 ABC transporter IF561_05570 PF08402 TOBE domain IF561_05575 PF00528 Binding-protein-dependent transport system inner membrane component IF561_05580 PF00528 Binding-protein-dependent transport system inner membrane component IF561_05585 PF13416 Bacterial extracellular solute-binding protein IF561_05590 PF13416 Bacterial extracellular solute-binding protein IF561_05595 PF02146 Sir2 family IF561_05605 PF00909 Ammonium Transporter Family IF561_05615 PF03527 RHS protein IF561_05615 PF05593 RHS Repeat IF561_05630 PF13247 4Fe-4S dicluster domain IF561_05635 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IF561_05635 PF00384 Molybdopterin oxidoreductase IF561_05635 PF01568 Molydopterin dinucleotide binding domain IF561_05645 PF02613 Nitrate reductase delta subunit IF561_05665 PF02634 FdhD/NarQ family IF561_05670 PF00005 ABC transporter IF561_05670 PF12848 ABC transporter IF561_05675 PF00512 His Kinase A (phospho-acceptor) domain IF561_05675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_05680 PF02954 Bacterial regulatory protein, Fis family IF561_05680 PF00072 Response regulator receiver domain IF561_05680 PF00158 Sigma-54 interaction domain IF561_05685 PF12849 PBP superfamily domain IF561_05690 PF00528 Binding-protein-dependent transport system inner membrane component IF561_05695 PF00005 ABC transporter IF561_05695 PF08402 TOBE domain IF561_05700 PF12804 MobA-like NTP transferase domain IF561_05705 PF03453 MoeA N-terminal region (domain I and II) IF561_05705 PF00994 Probable molybdopterin binding domain IF561_05705 PF03454 MoeA C-terminal region (domain IV) IF561_05715 PF00480 ROK family IF561_05720 PF03942 DTW domain IF561_05750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IF561_05750 PF17202 Single cache domain 3 IF561_05750 PF00672 HAMP domain IF561_05755 PF00877 NlpC/P60 family IF561_05765 PF00990 Diguanylate cyclase, GGDEF domain IF561_05765 PF05230 MASE2 domain IF561_05770 PF01339 CheB methylesterase IF561_05770 PF00072 Response regulator receiver domain IF561_05775 PF03881 Fructosamine kinase IF561_05785 PF00677 Lumazine binding domain IF561_05790 PF01554 MatE IF561_05800 PF01068 ATP dependent DNA ligase domain IF561_05800 PF14743 DNA ligase OB-like domain IF561_05805 PF01740 STAS domain IF561_05815 PF02563 Polysaccharide biosynthesis/export protein IF561_05815 PF10531 SLBB domain IF561_05830 PF00072 Response regulator receiver domain IF561_05830 PF02954 Bacterial regulatory protein, Fis family IF561_05830 PF00158 Sigma-54 interaction domain IF561_05835 PF13439 Glycosyltransferase Family 4 IF561_05835 PF00534 Glycosyl transferases group 1 IF561_05840 PF13439 Glycosyltransferase Family 4 IF561_05840 PF00534 Glycosyl transferases group 1 IF561_05870 PF13439 Glycosyltransferase Family 4 IF561_05870 PF00534 Glycosyl transferases group 1 IF561_05875 PF00535 Glycosyl transferase family 2 IF561_05880 PF02397 Bacterial sugar transferase IF561_05890 PF02028 BCCT, betaine/carnitine/choline family transporter IF561_05905 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold IF561_05905 PF00271 Helicase conserved C-terminal domain IF561_05905 PF11898 Domain of unknown function (DUF3418) IF561_05905 PF00270 DEAD/DEAH box helicase IF561_05905 PF04408 Helicase associated domain (HA2) IF561_05910 PF02525 Flavodoxin-like fold IF561_05920 PF02613 Nitrate reductase delta subunit IF561_05925 PF04976 DMSO reductase anchor subunit (DmsC) IF561_05930 PF13247 4Fe-4S dicluster domain IF561_05930 PF12800 4Fe-4S binding domain IF561_05935 PF01568 Molydopterin dinucleotide binding domain IF561_05935 PF00384 Molybdopterin oxidoreductase IF561_05935 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IF561_05965 PF17151 Periplasmic sensor domain IF561_05965 PF00990 Diguanylate cyclase, GGDEF domain IF561_05975 PF00012 Hsp70 protein IF561_05980 PF00012 Hsp70 protein IF561_06005 PF00005 ABC transporter IF561_06005 PF00664 ABC transporter transmembrane region IF561_06010 PF00005 ABC transporter IF561_06010 PF00664 ABC transporter transmembrane region IF561_06030 PF03222 Tryptophan/tyrosine permease family IF561_06035 PF00465 Iron-containing alcohol dehydrogenase IF561_06040 PF01966 HD domain IF561_06090 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE IF561_06120 PF01037 Lrp/AsnC ligand binding domain IF561_06130 PF05947 Type VI secretion system, TssF IF561_06140 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath IF561_06155 PF00069 Protein kinase domain IF561_06180 PF04717 Type VI secretion system, phage-baseplate injector IF561_06185 PF05638 Type VI secretion system effector, Hcp IF561_06190 PF17871 AAA lid domain IF561_06190 PF07724 AAA domain (Cdc48 subfamily) IF561_06190 PF00004 ATPase family associated with various cellular activities (AAA) IF561_06190 PF10431 C-terminal, D2-small domain, of ClpB protein IF561_06195 PF02954 Bacterial regulatory protein, Fis family IF561_06195 PF00072 Response regulator receiver domain IF561_06195 PF00158 Sigma-54 interaction domain IF561_06220 PF08525 Opacity-associated protein A N-terminal motif IF561_06220 PF01551 Peptidase family M23 IF561_06220 PF01476 LysM domain IF561_06225 PF03741 Integral membrane protein TerC family IF561_06235 PF04055 Radical SAM superfamily IF561_06240 PF11230 Protein of unknown function (DUF3029) IF561_06245 PF01810 LysE type translocator IF561_06250 PF11871 Domain of unknown function (DUF3391) IF561_06250 PF01966 HD domain IF561_06255 PF00563 EAL domain IF561_06255 PF03707 Bacterial signalling protein N terminal repeat IF561_06255 PF00990 Diguanylate cyclase, GGDEF domain IF561_06260 PF02954 Bacterial regulatory protein, Fis family IF561_06260 PF00072 Response regulator receiver domain IF561_06260 PF00158 Sigma-54 interaction domain IF561_06265 PF00512 His Kinase A (phospho-acceptor) domain IF561_06265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_06265 PF00497 Bacterial extracellular solute-binding proteins, family 3 IF561_06270 PF00939 Sodium:sulfate symporter transmembrane region IF561_06285 PF00300 Histidine phosphatase superfamily (branch 1) IF561_06305 PF03466 LysR substrate binding domain IF561_06305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_06310 PF08543 Phosphomethylpyrimidine kinase IF561_06325 PF13533 Biotin-lipoyl like IF561_06380 PF02481 DNA recombination-mediator protein A IF561_06380 PF18255 DNA processing protein A sterile alpha motif domain IF561_06510 PF04466 Phage terminase large subunit IF561_06510 PF17288 Terminase RNAseH like domain IF561_06520 PF02195 ParB-like nuclease domain IF561_06535 PF07411 Domain of unknown function (DUF1508) IF561_06565 PF00575 S1 RNA binding domain IF561_06565 PF00773 RNB domain IF561_06565 PF08461 Ribonuclease R winged-helix domain IF561_06565 PF17876 Cold shock domain IF561_06565 PF08206 Ribonuclease B OB domain IF561_06570 PF00313 'Cold-shock' DNA-binding domain IF561_06675 PF14497 Glutathione S-transferase, C-terminal domain IF561_06675 PF02798 Glutathione S-transferase, N-terminal domain IF561_06685 PF04209 homogentisate 1,2-dioxygenase IF561_06690 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IF561_06700 PF07687 Peptidase dimerisation domain IF561_06700 PF01546 Peptidase family M20/M25/M40 IF561_06705 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IF561_06710 PF00528 Binding-protein-dependent transport system inner membrane component IF561_06715 PF00528 Binding-protein-dependent transport system inner membrane component IF561_06715 PF12911 N-terminal TM domain of oligopeptide transport permease C IF561_06720 PF00005 ABC transporter IF561_06720 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IF561_06725 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IF561_06725 PF00005 ABC transporter IF561_06735 PF01752 Collagenase IF561_06735 PF08453 Peptidase family M9 N-terminal IF561_06745 PF00528 Binding-protein-dependent transport system inner membrane component IF561_06750 PF00528 Binding-protein-dependent transport system inner membrane component IF561_06755 PF08402 TOBE domain IF561_06755 PF00005 ABC transporter IF561_06760 PF00701 Dihydrodipicolinate synthetase family IF561_06765 PF02423 Ornithine cyclodeaminase/mu-crystallin family IF561_06780 PF05544 Proline racemase IF561_06785 PF00171 Aldehyde dehydrogenase family IF561_06790 PF00392 Bacterial regulatory proteins, gntR family IF561_06810 PF05971 RNA methyltransferase IF561_06815 PF01863 Protein of unknown function DUF45 IF561_06820 PF04991 LicD family IF561_06825 PF16363 GDP-mannose 4,6 dehydratase IF561_06830 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase IF561_06850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_06850 PF03466 LysR substrate binding domain IF561_06870 PF00005 ABC transporter IF561_06875 PF01032 FecCD transport family IF561_06880 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family IF561_06895 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase IF561_06900 PF02654 Cobalamin-5-phosphate synthase IF561_06905 PF02277 Phosphoribosyltransferase IF561_06910 PF13460 NAD(P)H-binding IF561_06915 PF00375 Sodium:dicarboxylate symporter family IF561_06925 PF00929 Exonuclease IF561_06925 PF08411 Exonuclease C-terminal IF561_06930 PF03788 LrgA family IF561_06935 PF04172 LrgB-like family IF561_06940 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region IF561_06940 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region IF561_06945 PF02222 ATP-grasp domain IF561_06950 PF05724 Thiopurine S-methyltransferase (TPMT) IF561_06960 PF00216 Bacterial DNA-binding protein IF561_06970 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain IF561_06970 PF03483 B3/4 domain IF561_06970 PF03484 tRNA synthetase B5 domain IF561_06970 PF03147 Ferredoxin-fold anticodon binding domain IF561_06970 PF01588 Putative tRNA binding domain IF561_06975 PF01409 tRNA synthetases class II core domain (F) IF561_06975 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain IF561_06980 PF00990 Diguanylate cyclase, GGDEF domain IF561_06980 PF17158 Membrane-associated sensor, integral membrane domain IF561_07010 PF01906 Putative heavy-metal-binding IF561_07015 PF00453 Ribosomal protein L20 IF561_07020 PF01632 Ribosomal protein L35 IF561_07025 PF00707 Translation initiation factor IF-3, C-terminal domain IF561_07025 PF05198 Translation initiation factor IF-3, N-terminal domain IF561_07030 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IF561_07030 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IF561_07030 PF02824 TGS domain IF561_07030 PF03129 Anticodon binding domain IF561_07045 PF07702 UTRA domain IF561_07045 PF00392 Bacterial regulatory proteins, gntR family IF561_07050 PF01979 Amidohydrolase family IF561_07055 PF00491 Arginase family IF561_07060 PF17392 Urocanase C-terminal domain IF561_07060 PF17391 Urocanase N-terminal domain IF561_07060 PF01175 Urocanase Rossmann-like domain IF561_07065 PF00221 Aromatic amino acid lyase IF561_07075 PF04191 Phospholipid methyltransferase IF561_07080 PF01565 FAD binding domain IF561_07080 PF13183 4Fe-4S dicluster domain IF561_07080 PF02913 FAD linked oxidases, C-terminal domain IF561_07095 PF05736 OprF membrane domain IF561_07095 PF00691 OmpA family IF561_07115 PF01259 SAICAR synthetase IF561_07120 PF09423 PhoD-like phosphatase IF561_07120 PF16655 PhoD-like phosphatase, N-terminal domain IF561_07130 PF02253 Phospholipase A1 IF561_07135 PF04408 Helicase associated domain (HA2) IF561_07135 PF00271 Helicase conserved C-terminal domain IF561_07135 PF08482 ATP-dependent helicase C-terminal IF561_07135 PF00270 DEAD/DEAH box helicase IF561_07140 PF00390 Malic enzyme, N-terminal domain IF561_07140 PF03949 Malic enzyme, NAD binding domain IF561_07145 PF02698 DUF218 domain IF561_07150 PF00939 Sodium:sulfate symporter transmembrane region IF561_07155 PF00990 Diguanylate cyclase, GGDEF domain IF561_07155 PF00072 Response regulator receiver domain IF561_07165 PF00266 Aminotransferase class-V IF561_07175 PF07992 Pyridine nucleotide-disulphide oxidoreductase IF561_07180 PF00664 ABC transporter transmembrane region IF561_07180 PF00005 ABC transporter IF561_07185 PF00664 ABC transporter transmembrane region IF561_07185 PF00005 ABC transporter IF561_07190 PF00291 Pyridoxal-phosphate dependent enzyme IF561_07195 PF00266 Aminotransferase class-V IF561_07205 PF00512 His Kinase A (phospho-acceptor) domain IF561_07205 PF00497 Bacterial extracellular solute-binding proteins, family 3 IF561_07205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_07220 PF04994 TfoX C-terminal domain IF561_07220 PF04993 TfoX N-terminal domain IF561_07230 PF03956 Lysine exporter LysO IF561_07240 PF00282 Pyridoxal-dependent decarboxylase conserved domain IF561_07245 PF01380 SIS domain IF561_07245 PF01418 Helix-turn-helix domain, rpiR family IF561_07250 PF00465 Iron-containing alcohol dehydrogenase IF561_07255 PF00462 Glutaredoxin IF561_07260 PF06826 Predicted Permease Membrane Region IF561_07260 PF02080 TrkA-C domain IF561_07265 PF07055 Enoyl reductase FAD binding domain IF561_07265 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase IF561_07265 PF12241 Trans-2-enoyl-CoA reductase catalytic region IF561_07270 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IF561_07270 PF02770 Acyl-CoA dehydrogenase, middle domain IF561_07270 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IF561_07270 PF09317 Domain of unknown function (DUF1974) IF561_07275 PF00440 Bacterial regulatory proteins, tetR family IF561_07275 PF16295 Tetracyclin repressor-like, C-terminal domain IF561_07280 PF06965 Na+/H+ antiporter 1 IF561_07295 PF00005 ABC transporter IF561_07300 PF01554 MatE IF561_07305 PF13460 NAD(P)H-binding IF561_07305 PF11066 Protein of unknown function (DUF2867) IF561_07310 PF03264 NapC/NirT cytochrome c family, N-terminal region IF561_07325 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) IF561_07340 PF07690 Major Facilitator Superfamily IF561_07345 PF00849 RNA pseudouridylate synthase IF561_07345 PF01479 S4 domain IF561_07350 PF04851 Type III restriction enzyme, res subunit IF561_07350 PF00271 Helicase conserved C-terminal domain IF561_07360 PF00072 Response regulator receiver domain IF561_07360 PF00486 Transcriptional regulatory protein, C terminal IF561_07365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_07370 PF01386 Ribosomal L25p family IF561_07385 PF02872 5'-nucleotidase, C-terminal domain IF561_07385 PF00149 Calcineurin-like phosphoesterase IF561_07395 PF06945 Protein of unknown function (DUF1289) IF561_07405 PF00196 Bacterial regulatory proteins, luxR family IF561_07405 PF00072 Response regulator receiver domain IF561_07410 PF00512 His Kinase A (phospho-acceptor) domain IF561_07410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_07420 PF07992 Pyridine nucleotide-disulphide oxidoreductase IF561_07420 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster IF561_07430 PF09335 SNARE associated Golgi protein IF561_07435 PF13416 Bacterial extracellular solute-binding protein IF561_07440 PF00528 Binding-protein-dependent transport system inner membrane component IF561_07445 PF00005 ABC transporter IF561_07450 PF01066 CDP-alcohol phosphatidyltransferase IF561_07460 PF00158 Sigma-54 interaction domain IF561_07460 PF01590 GAF domain IF561_07465 PF03063 Prismane/CO dehydrogenase family IF561_07470 PF00175 Oxidoreductase NAD-binding domain IF561_07470 PF00111 2Fe-2S iron-sulfur cluster binding domain IF561_07470 PF00970 Oxidoreductase FAD-binding domain IF561_07480 PF00849 RNA pseudouridylate synthase IF561_07485 PF12729 Four helix bundle sensory module for signal transduction IF561_07485 PF00672 HAMP domain IF561_07485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IF561_07490 PF00209 Sodium:neurotransmitter symporter family IF561_07495 PF13396 Phospholipase_D-nuclease N-terminal IF561_07495 PF13091 PLD-like domain IF561_07500 PF01053 Cys/Met metabolism PLP-dependent enzyme IF561_07505 PF00561 alpha/beta hydrolase fold IF561_07510 PF03280 Proteobacterial lipase chaperone protein IF561_07515 PF13673 Acetyltransferase (GNAT) domain IF561_07515 PF13302 Acetyltransferase (GNAT) domain IF561_07515 PF00117 Glutamine amidotransferase class-I IF561_07515 PF03352 Methyladenine glycosylase IF561_07515 PF00958 GMP synthase C terminal domain IF561_07520 PF00873 AcrB/AcrD/AcrF family IF561_07530 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IF561_07535 PF04024 PspC domain IF561_07540 PF06667 Phage shock protein B IF561_07545 PF04012 PspA/IM30 family IF561_07550 PF00158 Sigma-54 interaction domain IF561_07550 PF02954 Bacterial regulatory protein, Fis family IF561_07555 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IF561_07560 PF00528 Binding-protein-dependent transport system inner membrane component IF561_07565 PF00528 Binding-protein-dependent transport system inner membrane component IF561_07565 PF12911 N-terminal TM domain of oligopeptide transport permease C IF561_07570 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IF561_07570 PF00005 ABC transporter IF561_07575 PF00005 ABC transporter IF561_07585 PF01368 DHH family IF561_07585 PF02833 DHHA2 domain IF561_07595 PF16874 Glycosyl hydrolase family 36 C-terminal domain IF561_07595 PF16875 Glycosyl hydrolase family 36 N-terminal domain IF561_07600 PF18364 Molybdopterin oxidoreductase N-terminal domain IF561_07600 PF00384 Molybdopterin oxidoreductase IF561_07600 PF01568 Molydopterin dinucleotide binding domain IF561_07605 PF03264 NapC/NirT cytochrome c family, N-terminal region IF561_07610 PF06796 Periplasmic nitrate reductase protein NapE IF561_07615 PF03649 Uncharacterised protein family (UPF0014) IF561_07625 PF01226 Formate/nitrite transporter IF561_07650 PF02698 DUF218 domain IF561_07655 PF00265 Thymidine kinase IF561_07660 PF09190 DALR domain IF561_07660 PF01406 tRNA synthetases class I (C) catalytic domain IF561_07665 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD IF561_07670 PF00149 Calcineurin-like phosphoesterase IF561_07675 PF00563 EAL domain IF561_07675 PF08668 HDOD domain IF561_07680 PF02810 SEC-C motif IF561_07685 PF01502 Phosphoribosyl-AMP cyclohydrolase IF561_07685 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase IF561_07690 PF00977 Histidine biosynthesis protein IF561_07735 PF00977 Histidine biosynthesis protein IF561_07740 PF00117 Glutamine amidotransferase class-I IF561_07745 PF08645 Polynucleotide kinase 3 phosphatase IF561_07745 PF00475 Imidazoleglycerol-phosphate dehydratase IF561_07750 PF00155 Aminotransferase class I and II IF561_07755 PF00815 Histidinol dehydrogenase IF561_07760 PF08029 HisG, C-terminal domain IF561_07760 PF01634 ATP phosphoribosyltransferase IF561_07765 PF02954 Bacterial regulatory protein, Fis family IF561_07765 PF00158 Sigma-54 interaction domain IF561_07765 PF00072 Response regulator receiver domain IF561_07775 PF03553 Na+/H+ antiporter family IF561_07780 PF00816 H-NS histone family IF561_07785 PF00294 pfkB family carbohydrate kinase IF561_07800 PF04356 Protein of unknown function (DUF489) IF561_07805 PF08328 Adenylosuccinate lyase C-terminal IF561_07805 PF00206 Lyase IF561_07840 PF00106 short chain dehydrogenase IF561_07850 PF01435 Peptidase family M48 IF561_07865 PF08241 Methyltransferase domain IF561_07870 PF00155 Aminotransferase class I and II IF561_07875 PF06968 Biotin and Thiamin Synthesis associated domain IF561_07875 PF04055 Radical SAM superfamily IF561_07880 PF00202 Aminotransferase class-III IF561_07885 PF01258 Prokaryotic dksA/traR C4-type zinc finger IF561_07900 PF02403 Seryl-tRNA synthetase N-terminal domain IF561_07900 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IF561_07905 PF00004 ATPase family associated with various cellular activities (AAA) IF561_07905 PF16193 AAA C-terminal domain IF561_07905 PF12002 MgsA AAA+ ATPase C terminal IF561_07910 PF03548 Outer membrane lipoprotein carrier protein LolA IF561_07915 PF17854 FtsK alpha domain IF561_07915 PF01580 FtsK/SpoIIIE family IF561_07915 PF09397 Ftsk gamma domain IF561_07915 PF13491 4TM region of DNA translocase FtsK/SpoIIIE IF561_07920 PF01037 Lrp/AsnC ligand binding domain IF561_07925 PF01262 Alanine dehydrogenase/PNT, C-terminal domain IF561_07925 PF05222 Alanine dehydrogenase/PNT, N-terminal domain IF561_07935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_07935 PF03466 LysR substrate binding domain IF561_07945 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) IF561_07950 PF03372 Endonuclease/Exonuclease/phosphatase family IF561_07960 PF00579 tRNA synthetases class I (W and Y) IF561_07975 PF00873 AcrB/AcrD/AcrF family IF561_07980 PF00529 HlyD membrane-fusion protein of T1SS IF561_07980 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IF561_07985 PF12729 Four helix bundle sensory module for signal transduction IF561_07985 PF00672 HAMP domain IF561_07985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IF561_08000 PF02796 Helix-turn-helix domain of resolvase IF561_08000 PF00239 Resolvase, N terminal domain IF561_08005 PF00075 RNase H IF561_08030 PF06610 L-alanine exporter IF561_08035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_08035 PF00512 His Kinase A (phospho-acceptor) domain IF561_08035 PF09308 LuxQ, periplasmic IF561_08035 PF00072 Response regulator receiver domain IF561_08045 PF03738 Glutathionylspermidine synthase preATP-grasp IF561_08055 PF03994 Domain of Unknown Function (DUF350) IF561_08065 PF02445 Quinolinate synthetase A protein IF561_08070 PF13174 Tetratricopeptide repeat IF561_08070 PF16331 TolA binding protein trimerisation IF561_08075 PF00691 OmpA family IF561_08080 PF07676 WD40-like Beta Propeller Repeat IF561_08080 PF04052 TolB amino-terminal domain IF561_08090 PF02472 Biopolymer transport protein ExbD/TolR IF561_08095 PF01618 MotA/TolQ/ExbB proton channel family IF561_08100 PF03061 Thioesterase superfamily IF561_08110 PF08173 Membrane bound YbgT-like protein IF561_08115 PF02322 Cytochrome bd terminal oxidase subunit II IF561_08120 PF01654 Cytochrome bd terminal oxidase subunit I IF561_08125 PF17864 RuvB AAA lid domain IF561_08125 PF05491 RuvB C-terminal winged helix domain IF561_08125 PF05496 Holliday junction DNA helicase RuvB P-loop domain IF561_08130 PF07499 RuvA, C-terminal domain IF561_08130 PF01330 RuvA N terminal domain IF561_08135 PF00672 HAMP domain IF561_08135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IF561_08135 PF02203 Tar ligand binding domain homologue IF561_08140 PF02075 Crossover junction endodeoxyribonuclease RuvC IF561_08145 PF01336 OB-fold nucleic acid binding domain IF561_08145 PF02938 GAD domain IF561_08145 PF00152 tRNA synthetases class II (D, K and N) IF561_08150 PF01904 Protein of unknown function DUF72 IF561_08155 PF13649 Methyltransferase domain IF561_08160 PF08003 Protein of unknown function (DUF1698) IF561_08165 PF18030 RimK PreATP-grasp domain IF561_08165 PF08443 RimK-like ATP-grasp domain IF561_08175 PF08443 RimK-like ATP-grasp domain IF561_08175 PF18030 RimK PreATP-grasp domain IF561_08185 PF04310 MukB N-terminal IF561_08185 PF16330 MukB hinge domain IF561_08190 PF04288 MukE-like family IF561_08195 PF03882 MukF winged-helix domain IF561_08195 PF17193 MukF C-terminal domain IF561_08195 PF17192 MukF middle domain IF561_08200 PF13847 Methyltransferase domain IF561_08205 PF02698 DUF218 domain IF561_08210 PF00072 Response regulator receiver domain IF561_08210 PF00486 Transcriptional regulatory protein, C terminal IF561_08215 PF02613 Nitrate reductase delta subunit IF561_08220 PF00356 Bacterial regulatory proteins, lacI family IF561_08225 PF04994 TfoX C-terminal domain IF561_08225 PF04993 TfoX N-terminal domain IF561_08245 PF00534 Glycosyl transferases group 1 IF561_08245 PF08323 Starch synthase catalytic domain IF561_08250 PF00483 Nucleotidyl transferase IF561_08255 PF08272 Topoisomerase I zinc-ribbon-like IF561_08255 PF01131 DNA topoisomerase IF561_08255 PF01751 Toprim domain IF561_08255 PF01396 Topoisomerase DNA binding C4 zinc finger IF561_08260 PF10692 Protein of unknown function (DUF2498) IF561_08265 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) IF561_08275 PF03588 Leucyl/phenylalanyl-tRNA protein transferase IF561_08280 PF04377 Arginine-tRNA-protein transferase, C terminus IF561_08280 PF04376 Arginine-tRNA-protein transferase, N terminus IF561_08285 PF01176 Translation initiation factor 1A / IF-1 IF561_08295 PF00004 ATPase family associated with various cellular activities (AAA) IF561_08295 PF07724 AAA domain (Cdc48 subfamily) IF561_08295 PF17871 AAA lid domain IF561_08295 PF02861 Clp amino terminal domain, pathogenicity island component IF561_08295 PF10431 C-terminal, D2-small domain, of ClpB protein IF561_08300 PF02617 ATP-dependent Clp protease adaptor protein ClpS IF561_08305 PF00313 'Cold-shock' DNA-binding domain IF561_08310 PF03971 Monomeric isocitrate dehydrogenase IF561_08315 PF00849 RNA pseudouridylate synthase IF561_08320 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) IF561_08330 PF13307 Helicase C-terminal domain IF561_08330 PF06733 DEAD_2 IF561_08335 PF01925 Sulfite exporter TauE/SafE IF561_08340 PF07445 Primosomal replication protein priC IF561_08345 PF10689 Protein of unknown function (DUF2496) IF561_08350 PF03372 Endonuclease/Exonuclease/phosphatase family IF561_08360 PF00528 Binding-protein-dependent transport system inner membrane component IF561_08365 PF00528 Binding-protein-dependent transport system inner membrane component IF561_08370 PF00497 Bacterial extracellular solute-binding proteins, family 3 IF561_08375 PF00005 ABC transporter IF561_08390 PF01228 Glycine radical IF561_08390 PF02901 Pyruvate formate lyase-like IF561_08400 PF04055 Radical SAM superfamily IF561_08410 PF03887 YfbU domain IF561_08415 PF08298 PrkA AAA domain IF561_08415 PF06798 PrkA serine protein kinase C-terminal domain IF561_08420 PF04285 Protein of unknown function (DUF444) IF561_08425 PF04293 SpoVR like protein IF561_08430 PF02348 Cytidylyltransferase IF561_08435 PF03966 Trm112p-like protein IF561_08440 PF02606 Tetraacyldisaccharide-1-P 4'-kinase IF561_08445 PF00664 ABC transporter transmembrane region IF561_08445 PF00005 ABC transporter IF561_08450 PF03772 Competence protein IF561_08450 PF13567 Domain of unknown function (DUF4131) IF561_08450 PF00753 Metallo-beta-lactamase superfamily IF561_08460 PF12704 MacB-like periplasmic core domain IF561_08460 PF02687 FtsX-like permease family IF561_08465 PF00005 ABC transporter IF561_08470 PF12704 MacB-like periplasmic core domain IF561_08470 PF02687 FtsX-like permease family IF561_08480 PF17757 UvrB interaction domain IF561_08480 PF03461 TRCF domain IF561_08480 PF00270 DEAD/DEAH box helicase IF561_08480 PF02559 CarD-like/TRCF domain IF561_08480 PF00271 Helicase conserved C-terminal domain IF561_08495 PF07992 Pyridine nucleotide-disulphide oxidoreductase IF561_08500 PF05728 Uncharacterised protein family (UPF0227) IF561_08510 PF08139 Prokaryotic membrane lipoprotein lipid attachment site IF561_08510 PF13036 Peptidoglycan-synthase activator LpoB IF561_08525 PF01230 HIT domain IF561_08530 PF00672 HAMP domain IF561_08530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IF561_08540 PF01048 Phosphorylase superfamily IF561_08545 PF00403 Heavy-metal-associated domain IF561_08550 PF00571 CBS domain IF561_08550 PF00478 IMP dehydrogenase / GMP reductase domain IF561_08560 PF11953 Domain of unknown function (DUF3470) IF561_08560 PF00037 4Fe-4S binding domain IF561_08565 PF00588 SpoU rRNA Methylase family IF561_08565 PF08032 RNA 2'-O ribose methyltransferase substrate binding IF561_08575 PF17152 Periplasmic sensor domain IF561_08575 PF00990 Diguanylate cyclase, GGDEF domain IF561_08585 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain IF561_08590 PF09619 Type III secretion system lipoprotein chaperone (YscW) IF561_08605 PF01037 Lrp/AsnC ligand binding domain IF561_08605 PF13404 AsnC-type helix-turn-helix domain IF561_08610 PF00291 Pyridoxal-phosphate dependent enzyme IF561_08630 PF00873 AcrB/AcrD/AcrF family IF561_08635 PF13533 Biotin-lipoyl like IF561_08680 PF07690 Major Facilitator Superfamily IF561_08685 PF03601 Conserved hypothetical protein 698 IF561_08695 PF13193 AMP-binding enzyme C-terminal domain IF561_08695 PF00501 AMP-binding enzyme IF561_08700 PF13378 Enolase C-terminal domain-like IF561_08705 PF00378 Enoyl-CoA hydratase/isomerase IF561_08710 PF12697 Alpha/beta hydrolase family IF561_08715 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IF561_08715 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IF561_08715 PF16582 Middle domain of thiamine pyrophosphate IF561_08720 PF00425 chorismate binding enzyme IF561_08725 PF00155 Aminotransferase class I and II IF561_08735 PF01966 HD domain IF561_08735 PF13286 Phosphohydrolase-associated domain IF561_08755 PF13145 PPIC-type PPIASE domain IF561_08760 PF00216 Bacterial DNA-binding protein IF561_08765 PF00004 ATPase family associated with various cellular activities (AAA) IF561_08765 PF05362 Lon protease (S16) C-terminal proteolytic domain IF561_08765 PF02190 ATP-dependent protease La (LON) substrate-binding domain IF561_08770 PF07724 AAA domain (Cdc48 subfamily) IF561_08770 PF10431 C-terminal, D2-small domain, of ClpB protein IF561_08770 PF06689 ClpX C4-type zinc finger IF561_08775 PF00574 Clp protease IF561_08780 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IF561_08780 PF05697 Bacterial trigger factor protein (TF) IF561_08780 PF05698 Bacterial trigger factor protein (TF) C-terminus IF561_08790 PF02743 Cache domain IF561_08790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_08790 PF00512 His Kinase A (phospho-acceptor) domain IF561_08795 PF00158 Sigma-54 interaction domain IF561_08795 PF02954 Bacterial regulatory protein, Fis family IF561_08795 PF00072 Response regulator receiver domain IF561_08805 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component IF561_08810 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component IF561_08815 PF03480 Bacterial extracellular solute-binding protein, family 7 IF561_08820 PF02696 Uncharacterized ACR, YdiU/UPF0061 family IF561_08840 PF02080 TrkA-C domain IF561_08840 PF02254 TrkA-N domain IF561_08845 PF00270 DEAD/DEAH box helicase IF561_08845 PF00271 Helicase conserved C-terminal domain IF561_08850 PF03471 Transporter associated domain IF561_08850 PF00571 CBS domain IF561_08850 PF01595 Cyclin M transmembrane N-terminal domain IF561_08860 PF04820 Tryptophan halogenase IF561_08885 PF00550 Phosphopantetheine attachment site IF561_08890 PF00550 Phosphopantetheine attachment site IF561_08905 PF07977 FabA-like domain IF561_08910 PF00535 Glycosyl transferase family 2 IF561_08915 PF00221 Aromatic amino acid lyase IF561_08940 PF02801 Beta-ketoacyl synthase, C-terminal domain IF561_08940 PF00109 Beta-ketoacyl synthase, N-terminal domain IF561_08945 PF07977 FabA-like domain IF561_08955 PF02801 Beta-ketoacyl synthase, C-terminal domain IF561_08955 PF00109 Beta-ketoacyl synthase, N-terminal domain IF561_08965 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) IF561_08975 PF00239 Resolvase, N terminal domain IF561_08975 PF02796 Helix-turn-helix domain of resolvase IF561_09000 PF00589 Phage integrase family IF561_09010 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain IF561_09010 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain IF561_09015 PF07662 Na+ dependent nucleoside transporter C-terminus IF561_09015 PF07670 Nucleoside recognition IF561_09015 PF01773 Na+ dependent nucleoside transporter N-terminus IF561_09020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_09020 PF03466 LysR substrate binding domain IF561_09025 PF13406 Transglycosylase SLT domain IF561_09030 PF05166 YcgL domain IF561_09035 PF03775 Septum formation inhibitor MinC, C-terminal domain IF561_09035 PF05209 Septum formation inhibitor MinC, N-terminal domain IF561_09040 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain IF561_09045 PF03776 Septum formation topological specificity factor MinE IF561_09050 PF01612 3'-5' exonuclease IF561_09050 PF00570 HRDC domain IF561_09055 PF13193 AMP-binding enzyme C-terminal domain IF561_09055 PF00501 AMP-binding enzyme IF561_09060 PF00561 alpha/beta hydrolase fold IF561_09075 PF00814 Glycoprotease family IF561_09080 PF04851 Type III restriction enzyme, res subunit IF561_09080 PF13307 Helicase C-terminal domain IF561_09085 PF01842 ACT domain IF561_09085 PF00551 Formyl transferase IF561_09090 PF06185 YecM protein IF561_09095 PF05746 DALR anticodon binding domain IF561_09095 PF00750 tRNA synthetases class I (R) IF561_09095 PF03485 Arginyl tRNA synthetase N terminal domain IF561_09110 PF07664 Ferrous iron transport protein B C terminus IF561_09110 PF17910 FeoB cytosolic helical domain IF561_09110 PF02421 Ferrous iron transport protein B IF561_09110 PF07670 Nucleoside recognition IF561_09115 PF04023 FeoA domain IF561_09120 PF12833 Helix-turn-helix domain IF561_09120 PF02311 AraC-like ligand binding domain IF561_09125 PF01297 Zinc-uptake complex component A periplasmic IF561_09130 PF00005 ABC transporter IF561_09135 PF00950 ABC 3 transport family IF561_09140 PF02629 CoA binding domain IF561_09140 PF00549 CoA-ligase IF561_09145 PF08442 ATP-grasp domain IF561_09145 PF00549 CoA-ligase IF561_09150 PF02817 e3 binding domain IF561_09150 PF00364 Biotin-requiring enzyme IF561_09150 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IF561_09155 PF16870 2-oxoglutarate dehydrogenase C-terminal IF561_09155 PF16078 2-oxoglutarate dehydrogenase N-terminus IF561_09155 PF00676 Dehydrogenase E1 component IF561_09155 PF02779 Transketolase, pyrimidine binding domain IF561_09160 PF13085 2Fe-2S iron-sulfur cluster binding domain IF561_09165 PF02910 Fumarate reductase flavoprotein C-term IF561_09165 PF00890 FAD binding domain IF561_09170 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit IF561_09175 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit IF561_09180 PF00285 Citrate synthase, C-terminal domain IF561_09185 PF01784 NIF3 (NGG1p interacting factor 3) IF561_09195 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IF561_09195 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IF561_09195 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IF561_09195 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IF561_09200 PF17206 SeqA protein N-terminal domain IF561_09200 PF03925 SeqA protein C-terminal domain IF561_09205 PF12697 Alpha/beta hydrolase family IF561_09215 PF00258 Flavodoxin IF561_09225 PF01475 Ferric uptake regulator family IF561_09230 PF00749 tRNA synthetases class I (E and Q), catalytic domain IF561_09230 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain IF561_09235 PF02378 Phosphotransferase system, EIIC IF561_09235 PF00367 phosphotransferase system, EIIB IF561_09240 PF01979 Amidohydrolase family IF561_09245 PF00480 ROK family IF561_09245 PF01047 MarR family IF561_09250 PF02254 TrkA-N domain IF561_09250 PF00999 Sodium/hydrogen exchanger family IF561_09255 PF13537 Glutamine amidotransferase domain IF561_09255 PF00733 Asparagine synthase IF561_09260 PF02357 Transcription termination factor nusG IF561_09265 PF00854 POT family IF561_09270 PF00762 Ferrochelatase IF561_09275 PF05191 Adenylate kinase, active site lid IF561_09280 PF00183 Hsp90 protein IF561_09280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_09285 PF00486 Transcriptional regulatory protein, C terminal IF561_09290 PF17323 Trans-membrane regulatory protein ToxS IF561_09305 PF12850 Calcineurin-like phosphoesterase superfamily domain IF561_09320 PF07556 Protein of unknown function (DUF1538) IF561_09325 PF07556 Protein of unknown function (DUF1538) IF561_09330 PF01370 NAD dependent epimerase/dehydratase family IF561_09330 PF08338 Domain of unknown function (DUF1731) IF561_09335 PF00106 short chain dehydrogenase IF561_09340 PF00085 Thioredoxin IF561_09345 PF16200 C-terminal region of band_7 IF561_09345 PF01145 SPFH domain / Band 7 family IF561_09360 PF03573 outer membrane porin, OprD family IF561_09365 PF03119 NAD-dependent DNA ligase C4 zinc finger domain IF561_09365 PF00533 BRCA1 C Terminus (BRCT) domain IF561_09365 PF01653 NAD-dependent DNA ligase adenylation domain IF561_09365 PF03120 NAD-dependent DNA ligase OB-fold domain IF561_09365 PF12826 Helix-hairpin-helix motif IF561_09370 PF04354 ZipA, C-terminal FtsZ-binding domain IF561_09380 PF00291 Pyridoxal-phosphate dependent enzyme IF561_09385 PF00381 PTS HPr component phosphorylation site IF561_09390 PF02896 PEP-utilising enzyme, TIM barrel domain IF561_09390 PF05524 PEP-utilising enzyme, N-terminal IF561_09390 PF00391 PEP-utilising enzyme, mobile domain IF561_09395 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 IF561_09400 PF00700 Bacterial flagellin C-terminal helical region IF561_09400 PF00669 Bacterial flagellin N-terminal helical region IF561_09400 PF07196 Flagellin hook IN motif IF561_09405 PF00669 Bacterial flagellin N-terminal helical region IF561_09405 PF07196 Flagellin hook IN motif IF561_09405 PF00700 Bacterial flagellin C-terminal helical region IF561_09410 PF00669 Bacterial flagellin N-terminal helical region IF561_09410 PF07196 Flagellin hook IN motif IF561_09410 PF00700 Bacterial flagellin C-terminal helical region IF561_09415 PF00669 Bacterial flagellin N-terminal helical region IF561_09420 PF07196 Flagellin hook IN motif IF561_09420 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IF561_09425 PF10135 Rod binding protein IF561_09425 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase IF561_09430 PF02119 Flagellar P-ring protein IF561_09435 PF02107 Flagellar L-ring protein IF561_09440 PF00460 Flagella basal body rod protein IF561_09440 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IF561_09445 PF00460 Flagella basal body rod protein IF561_09445 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IF561_09450 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IF561_09450 PF07559 Flagellar basal body protein FlaE IF561_09450 PF00460 Flagella basal body rod protein IF561_09455 PF13861 FlgD Tudor-like domain IF561_09455 PF13860 FlgD Ig-like domain IF561_09455 PF03963 Flagellar hook capping protein - N-terminal region IF561_09460 PF00460 Flagella basal body rod protein IF561_09460 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IF561_09465 PF00460 Flagella basal body rod protein IF561_09470 PF03705 CheR methyltransferase, all-alpha domain IF561_09470 PF01739 CheR methyltransferase, SAM binding domain IF561_09475 PF00072 Response regulator receiver domain IF561_09475 PF01584 CheW-like domain IF561_09520 PF01389 OmpA-like transmembrane domain IF561_09520 PF00691 OmpA family IF561_09525 PF00749 tRNA synthetases class I (E and Q), catalytic domain IF561_09530 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) IF561_09535 PF13609 Gram-negative porin IF561_09540 PF00403 Heavy-metal-associated domain IF561_09555 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain IF561_09555 PF00728 Glycosyl hydrolase family 20, catalytic domain IF561_09555 PF02838 Glycosyl hydrolase family 20, domain 2 IF561_09555 PF03173 Putative carbohydrate binding domain IF561_09575 PF01713 Smr domain IF561_09580 PF00849 RNA pseudouridylate synthase IF561_09580 PF01479 S4 domain IF561_09585 PF04073 Aminoacyl-tRNA editing domain IF561_09590 PF02872 5'-nucleotidase, C-terminal domain IF561_09590 PF00149 Calcineurin-like phosphoesterase IF561_09595 PF00793 DAHP synthetase I family IF561_09600 PF13369 Transglutaminase-like superfamily IF561_09605 PF04247 Invasion gene expression up-regulator, SirB IF561_09610 PF13847 Methyltransferase domain IF561_09610 PF17827 PrmC N-terminal domain IF561_09615 PF00472 RF-1 domain IF561_09615 PF03462 PCRF domain IF561_09620 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain IF561_09620 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain IF561_09620 PF01488 Shikimate / quinate 5-dehydrogenase IF561_09625 PF03550 Outer membrane lipoprotein LolB IF561_09630 PF00288 GHMP kinases N terminal domain IF561_09630 PF08544 GHMP kinases C terminal IF561_09635 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase IF561_09635 PF14572 Phosphoribosyl synthetase-associated domain IF561_09640 PF01195 Peptidyl-tRNA hydrolase IF561_09645 PF01926 50S ribosome-binding GTPase IF561_09645 PF06071 Protein of unknown function (DUF933) IF561_09760 PF01494 FAD binding domain IF561_09765 PF04055 Radical SAM superfamily IF561_09765 PF01938 TRAM domain IF561_09765 PF00919 Uncharacterized protein family UPF0004 IF561_09770 PF02562 PhoH-like protein IF561_09775 PF02130 Uncharacterized protein family UPF0054 IF561_09780 PF00571 CBS domain IF561_09780 PF03471 Transporter associated domain IF561_09785 PF00795 Carbon-nitrogen hydrolase IF561_09790 PF07295 Zinc-ribbon containing domain IF561_09795 PF08264 Anticodon-binding domain of tRNA IF561_09795 PF00133 tRNA synthetases class I (I, L, M and V) IF561_09795 PF13603 Leucyl-tRNA synthetase, Domain 2 IF561_09800 PF04390 Lipopolysaccharide-assembly IF561_09805 PF14840 Processivity clamp loader gamma complex DNA pol III C-term IF561_09805 PF06144 DNA polymerase III, delta subunit IF561_09815 PF02590 Predicted SPOUT methyltransferase IF561_09820 PF03717 Penicillin-binding Protein dimerisation domain IF561_09820 PF00905 Penicillin binding protein transpeptidase domain IF561_09825 PF01098 Cell cycle protein IF561_09830 PF03330 Lytic transglycolase IF561_09830 PF05036 Sporulation related domain IF561_09835 PF00768 D-alanyl-D-alanine carboxypeptidase IF561_09835 PF07943 Penicillin-binding protein 5, C-terminal domain IF561_09840 PF04359 Protein of unknown function (DUF493) IF561_09845 PF03099 Biotin/lipoate A/B protein ligase family IF561_09850 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family IF561_09850 PF04055 Radical SAM superfamily IF561_09855 PF00464 Serine hydroxymethyltransferase IF561_09860 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 IF561_09860 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) IF561_09875 PF16657 Maltogenic Amylase, C-terminal domain IF561_09875 PF00128 Alpha amylase, catalytic domain IF561_09880 PF00367 phosphotransferase system, EIIB IF561_09880 PF02378 Phosphotransferase system, EIIC IF561_09885 PF00356 Bacterial regulatory proteins, lacI family IF561_09895 PF00005 ABC transporter IF561_09895 PF09383 NIL domain IF561_09900 PF00528 Binding-protein-dependent transport system inner membrane component IF561_09905 PF03180 NLPA lipoprotein IF561_09910 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) IF561_09915 PF07348 Syd protein (SUKH-2) IF561_09920 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term IF561_09920 PF14489 QueF-like protein IF561_09930 PF00990 Diguanylate cyclase, GGDEF domain IF561_09935 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases IF561_09935 PF03641 Possible lysine decarboxylase IF561_09935 PF11892 Domain of unknown function (DUF3412) IF561_09940 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain IF561_09940 PF01367 5'-3' exonuclease, C-terminal SAM fold IF561_09945 PF01223 DNA/RNA non-specific endonuclease IF561_09950 PF18125 RlmM ferredoxin-like domain IF561_09950 PF01728 FtsJ-like methyltransferase IF561_09955 PF04241 Protein of unknown function (DUF423) IF561_09965 PF03466 LysR substrate binding domain IF561_09965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_09970 PF02926 THUMP domain IF561_09970 PF02568 Thiamine biosynthesis protein (ThiI) IF561_09975 PF00691 OmpA family IF561_09980 PF01618 MotA/TolQ/ExbB proton channel family IF561_09985 PF02609 Exonuclease VII small subunit IF561_09990 PF00348 Polyprenyl synthetase IF561_09995 PF13292 1-deoxy-D-xylulose-5-phosphate synthase IF561_09995 PF02779 Transketolase, pyrimidine binding domain IF561_09995 PF02780 Transketolase, C-terminal domain IF561_10000 PF04608 Phosphatidylglycerophosphatase A IF561_10005 PF00586 AIR synthase related protein, N-terminal domain IF561_10005 PF02769 AIR synthase related protein, C-terminal domain IF561_10010 PF01029 NusB family IF561_10015 PF00885 6,7-dimethyl-8-ribityllumazine synthase IF561_10020 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase IF561_10020 PF00925 GTP cyclohydrolase II IF561_10025 PF00677 Lumazine binding domain IF561_10030 PF01872 RibD C-terminal domain IF561_10030 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region IF561_10035 PF03477 ATP cone domain IF561_10040 PF00171 Aldehyde dehydrogenase family IF561_10045 PF01472 PUA domain IF561_10045 PF00696 Amino acid kinase family IF561_10050 PF07417 Sigma factor-binding transcriptional regulator Crl IF561_10055 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) IF561_10060 PF00156 Phosphoribosyl transferase domain IF561_10065 PF00860 Permease family IF561_10070 PF01546 Peptidase family M20/M25/M40 IF561_10070 PF07687 Peptidase dimerisation domain IF561_10095 PF02769 AIR synthase related protein, C-terminal domain IF561_10095 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain IF561_10095 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal IF561_10100 PF00497 Bacterial extracellular solute-binding proteins, family 3 IF561_10100 PF01464 Transglycosylase SLT domain IF561_10105 PF14437 MafB19-like deaminase IF561_10110 PF03806 AbgT putative transporter family IF561_10130 PF00114 Pilin (bacterial filament) IF561_10130 PF07963 Prokaryotic N-terminal methylation motif IF561_10135 PF07963 Prokaryotic N-terminal methylation motif IF561_10135 PF00114 Pilin (bacterial filament) IF561_10140 PF00226 DnaJ domain IF561_10140 PF01556 DnaJ C terminal domain IF561_10140 PF00684 DnaJ central domain IF561_10145 PF00012 Hsp70 protein IF561_10150 PF00375 Sodium:dicarboxylate symporter family IF561_10155 PF01025 GrpE IF561_10160 PF01513 ATP-NAD kinase IF561_10170 PF02463 RecF/RecN/SMC N terminal domain IF561_10175 PF04355 SmpA / OmlA family IF561_10180 PF03658 RnfH family Ubiquitin IF561_10185 PF03364 Polyketide cyclase / dehydrase and lipid transport IF561_10190 PF01668 SmpB protein IF561_10215 PF18766 SWI2/SNF2 ATPase IF561_10215 PF11867 Domain of unknown function (DUF3387) IF561_10215 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) IF561_10225 PF12161 HsdM N-terminal domain IF561_10225 PF02384 N-6 DNA Methylase IF561_10250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_10250 PF03466 LysR substrate binding domain IF561_10255 PF00583 Acetyltransferase (GNAT) family IF561_10255 PF00795 Carbon-nitrogen hydrolase IF561_10275 PF00202 Aminotransferase class-III IF561_10280 PF01053 Cys/Met metabolism PLP-dependent enzyme IF561_10285 PF07969 Amidohydrolase family IF561_10300 PF03466 LysR substrate binding domain IF561_10300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_10305 PF01266 FAD dependent oxidoreductase IF561_10310 PF01235 Sodium:alanine symporter family IF561_10320 PF01184 GPR1/FUN34/yaaH family IF561_10325 PF06483 Chitinase C IF561_10325 PF00704 Glycosyl hydrolases family 18 IF561_10330 PF03553 Na+/H+ antiporter family IF561_10335 PF00117 Glutamine amidotransferase class-I IF561_10335 PF00958 GMP synthase C terminal domain IF561_10335 PF02540 NAD synthase IF561_10340 PF00478 IMP dehydrogenase / GMP reductase domain IF561_10340 PF00571 CBS domain IF561_10345 PF13742 OB-fold nucleic acid binding domain IF561_10345 PF02601 Exonuclease VII, large subunit IF561_10360 PF01926 50S ribosome-binding GTPase IF561_10360 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal IF561_10365 PF13360 PQQ-like domain IF561_10370 PF09976 Tetratricopeptide repeat-like domain IF561_10375 PF03129 Anticodon binding domain IF561_10375 PF13393 Histidyl-tRNA synthetase IF561_10380 PF04551 GcpE protein IF561_10385 PF13464 Domain of unknown function (DUF4115) IF561_10390 PF04055 Radical SAM superfamily IF561_10395 PF00334 Nucleoside diphosphate kinase IF561_10400 PF12404 Peptidase IF561_10400 PF00883 Cytosol aminopeptidase family, catalytic domain IF561_10405 PF04384 Iron-sulphur cluster assembly IF561_10410 PF00111 2Fe-2S iron-sulfur cluster binding domain IF561_10415 PF00012 Hsp70 protein IF561_10420 PF07743 HSCB C-terminal oligomerisation domain IF561_10420 PF00226 DnaJ domain IF561_10425 PF01521 Iron-sulphur cluster biosynthesis IF561_10430 PF01592 NifU-like N terminal domain IF561_10435 PF00266 Aminotransferase class-V IF561_10440 PF02082 Transcriptional regulator IF561_10445 PF00588 SpoU rRNA Methylase family IF561_10450 PF00459 Inositol monophosphatase family IF561_10455 PF02355 Protein export membrane protein IF561_10455 PF07549 SecD/SecF GG Motif IF561_10460 PF07549 SecD/SecF GG Motif IF561_10460 PF13721 SecD export protein N-terminal TM region IF561_10460 PF02355 Protein export membrane protein IF561_10465 PF02699 Preprotein translocase subunit IF561_10470 PF01702 Queuine tRNA-ribosyltransferase IF561_10475 PF02547 Queuosine biosynthesis protein IF561_10485 PF00571 CBS domain IF561_10490 PF00463 Isocitrate lyase family IF561_10495 PF01274 Malate synthase IF561_10500 PF03466 LysR substrate binding domain IF561_10500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_10505 PF10417 C-terminal domain of 1-Cys peroxiredoxin IF561_10505 PF00578 AhpC/TSA family IF561_10510 PF03932 CutC family IF561_10515 PF03976 Polyphosphate kinase 2 (PPK2) IF561_10520 PF01895 PhoU domain IF561_10525 PF00005 ABC transporter IF561_10530 PF00528 Binding-protein-dependent transport system inner membrane component IF561_10535 PF00528 Binding-protein-dependent transport system inner membrane component IF561_10540 PF17941 Polyphosphate kinase C-terminal domain 1 IF561_10540 PF13090 Polyphosphate kinase C-terminal domain 2 IF561_10540 PF02503 Polyphosphate kinase middle domain IF561_10540 PF13089 Polyphosphate kinase N-terminal domain IF561_10545 PF02541 Ppx/GppA phosphatase family IF561_10550 PF12849 PBP superfamily domain IF561_10555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_10555 PF00512 His Kinase A (phospho-acceptor) domain IF561_10555 PF00989 PAS fold IF561_10555 PF11808 Phosphate regulon sensor protein PhoR IF561_10560 PF00072 Response regulator receiver domain IF561_10560 PF00486 Transcriptional regulatory protein, C terminal IF561_10565 PF04381 Putative exonuclease, RdgC IF561_10570 PF16325 Peptidase family U32 C-terminal domain IF561_10570 PF01136 Peptidase family U32 IF561_10575 PF00037 4Fe-4S binding domain IF561_10585 PF03411 Penicillin-insensitive murein endopeptidase IF561_10630 PF02861 Clp amino terminal domain, pathogenicity island component IF561_10630 PF10431 C-terminal, D2-small domain, of ClpB protein IF561_10630 PF17871 AAA lid domain IF561_10630 PF00004 ATPase family associated with various cellular activities (AAA) IF561_10630 PF07724 AAA domain (Cdc48 subfamily) IF561_10635 PF02578 Multi-copper polyphenol oxidoreductase laccase IF561_10640 PF00849 RNA pseudouridylate synthase IF561_10640 PF01479 S4 domain IF561_10645 PF13525 Outer membrane lipoprotein IF561_10650 PF01464 Transglycosylase SLT domain IF561_10655 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein IF561_10660 PF00800 Prephenate dehydratase IF561_10660 PF01817 Chorismate mutase type II IF561_10665 PF01931 Protein of unknown function DUF84 IF561_10670 PF01371 Trp repressor protein IF561_10675 PF01464 Transglycosylase SLT domain IF561_10675 PF14718 Soluble lytic murein transglycosylase L domain IF561_10680 PF00005 ABC transporter IF561_10680 PF12848 ABC transporter IF561_10685 PF07238 PilZ domain IF561_10690 PF04225 Opacity-associated protein A LysM-like domain IF561_10690 PF01551 Peptidase family M23 IF561_10695 PF01817 Chorismate mutase type II IF561_10695 PF02153 Prephenate dehydrogenase IF561_10700 PF00793 DAHP synthetase I family IF561_10705 PF00933 Glycosyl hydrolase family 3 N terminal domain IF561_10710 PF03702 Anhydro-N-acetylmuramic acid kinase IF561_10715 PF13580 SIS domain IF561_10730 PF02554 Carbon starvation protein CstA IF561_10735 PF06580 Histidine kinase IF561_10735 PF07694 5TMR of 5TMR-LYT IF561_10740 PF00072 Response regulator receiver domain IF561_10740 PF04397 LytTr DNA-binding domain IF561_10745 PF02401 LytB protein IF561_10750 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IF561_10755 PF01252 Signal peptidase (SPase) II IF561_10760 PF06827 Zinc finger found in FPG and IleRS IF561_10760 PF00133 tRNA synthetases class I (I, L, M and V) IF561_10760 PF08264 Anticodon-binding domain of tRNA IF561_10765 PF01687 Riboflavin kinase IF561_10765 PF06574 FAD synthetase IF561_10770 PF03023 Lipid II flippase MurJ IF561_10775 PF01649 Ribosomal protein S20 IF561_10780 PF01022 Bacterial regulatory protein, arsR family IF561_10785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_10785 PF03466 LysR substrate binding domain IF561_10790 PF02690 Na+/Pi-cotransporter IF561_10800 PF00303 Thymidylate synthase IF561_10805 PF01790 Prolipoprotein diacylglyceryl transferase IF561_10810 PF01925 Sulfite exporter TauE/SafE IF561_10815 PF01590 GAF domain IF561_10815 PF00391 PEP-utilising enzyme, mobile domain IF561_10815 PF02896 PEP-utilising enzyme, TIM barrel domain IF561_10815 PF05524 PEP-utilising enzyme, N-terminal IF561_10820 PF00293 NUDIX domain IF561_10825 PF02976 DNA mismatch repair enzyme MutH IF561_10835 PF00248 Aldo/keto reductase family IF561_10845 PF02954 Bacterial regulatory protein, Fis family IF561_10845 PF00072 Response regulator receiver domain IF561_10845 PF00158 Sigma-54 interaction domain IF561_10850 PF00152 tRNA synthetases class II (D, K and N) IF561_10850 PF01336 OB-fold nucleic acid binding domain IF561_10860 PF01368 DHH family IF561_10860 PF02272 DHHA1 domain IF561_10860 PF17768 RecJ OB domain IF561_10865 PF10411 Disulfide bond isomerase protein N-terminus IF561_10865 PF13098 Thioredoxin-like domain IF561_10870 PF02899 Phage integrase, N-terminal SAM-like domain IF561_10870 PF00589 Phage integrase family IF561_10875 PF00258 Flavodoxin IF561_10880 PF05525 Branched-chain amino acid transport protein IF561_10885 PF05175 Methyltransferase small domain IF561_10890 PF00270 DEAD/DEAH box helicase IF561_10890 PF00271 Helicase conserved C-terminal domain IF561_10895 PF03883 Peroxide stress protein YaaA IF561_10900 PF01235 Sodium:alanine symporter family IF561_10915 PF03167 Uracil DNA glycosylase superfamily IF561_10920 PF01261 Xylose isomerase-like TIM barrel IF561_10925 PF01228 Glycine radical IF561_10930 PF00291 Pyridoxal-phosphate dependent enzyme IF561_10930 PF14821 Threonine synthase N terminus IF561_10935 PF08544 GHMP kinases C terminal IF561_10935 PF00288 GHMP kinases N terminal domain IF561_10940 PF00696 Amino acid kinase family IF561_10940 PF01842 ACT domain IF561_10940 PF13840 ACT domain IF561_10940 PF00742 Homoserine dehydrogenase IF561_10940 PF03447 Homoserine dehydrogenase, NAD binding domain IF561_10950 PF03737 Aldolase/RraA IF561_10960 PF00486 Transcriptional regulatory protein, C terminal IF561_10960 PF00072 Response regulator receiver domain IF561_10970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_10970 PF00512 His Kinase A (phospho-acceptor) domain IF561_10970 PF00072 Response regulator receiver domain IF561_10970 PF00989 PAS fold IF561_10970 PF18415 Histidine kinase receptor ArcB trans-membrane domain IF561_10970 PF01627 Hpt domain IF561_10975 PF00563 EAL domain IF561_10975 PF01590 GAF domain IF561_10975 PF00990 Diguanylate cyclase, GGDEF domain IF561_10975 PF00360 Phytochrome region IF561_10980 PF16199 Radical_SAM C-terminal domain IF561_10980 PF04055 Radical SAM superfamily IF561_10985 PF01493 GXGXG motif IF561_10985 PF01645 Conserved region in glutamate synthase IF561_10985 PF04898 Glutamate synthase central domain IF561_10985 PF00310 Glutamine amidotransferases class-II IF561_10990 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster IF561_10990 PF07992 Pyridine nucleotide-disulphide oxidoreductase IF561_10995 PF01645 Conserved region in glutamate synthase IF561_10995 PF04898 Glutamate synthase central domain IF561_10995 PF01493 GXGXG motif IF561_10995 PF00310 Glutamine amidotransferases class-II IF561_11000 PF07992 Pyridine nucleotide-disulphide oxidoreductase IF561_11000 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster IF561_11010 PF01048 Phosphorylase superfamily IF561_11015 PF17113 Regulatory signalling modulator protein AmpE IF561_11015 PF03186 CobD/Cbib protein IF561_11020 PF01497 Periplasmic binding protein IF561_11025 PF03458 UPF0126 domain IF561_11030 PF03466 LysR substrate binding domain IF561_11030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_11035 PF01925 Sulfite exporter TauE/SafE IF561_11050 PF02142 MGS-like domain IF561_11050 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain IF561_11050 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IF561_11055 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain IF561_11055 PF00117 Glutamine amidotransferase class-I IF561_11060 PF05173 Dihydrodipicolinate reductase, C-terminus IF561_11060 PF01113 Dihydrodipicolinate reductase, N-terminus IF561_11065 PF00293 NUDIX domain IF561_11070 PF07516 SecA Wing and Scaffold domain IF561_11070 PF07517 SecA DEAD-like domain IF561_11070 PF02810 SEC-C motif IF561_11070 PF01043 SecA preprotein cross-linking domain IF561_11080 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase IF561_11085 PF12327 FtsZ family, C-terminal domain IF561_11085 PF00091 Tubulin/FtsZ family, GTPase domain IF561_11090 PF02491 SHS2 domain inserted in FTSA IF561_11095 PF08478 POTRA domain, FtsQ-type IF561_11095 PF03799 Cell division protein FtsQ IF561_11100 PF02875 Mur ligase family, glutamate ligase domain IF561_11100 PF08245 Mur ligase middle domain IF561_11100 PF01225 Mur ligase family, catalytic domain IF561_11105 PF03033 Glycosyltransferase family 28 N-terminal domain IF561_11105 PF04101 Glycosyltransferase family 28 C-terminal domain IF561_11110 PF01098 Cell cycle protein IF561_11115 PF08245 Mur ligase middle domain IF561_11115 PF02875 Mur ligase family, glutamate ligase domain IF561_11120 PF00953 Glycosyl transferase family 4 IF561_11120 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 IF561_11125 PF02875 Mur ligase family, glutamate ligase domain IF561_11125 PF08245 Mur ligase middle domain IF561_11125 PF01225 Mur ligase family, catalytic domain IF561_11130 PF01225 Mur ligase family, catalytic domain IF561_11130 PF02875 Mur ligase family, glutamate ligase domain IF561_11130 PF08245 Mur ligase middle domain IF561_11135 PF03717 Penicillin-binding Protein dimerisation domain IF561_11135 PF00905 Penicillin binding protein transpeptidase domain IF561_11140 PF04999 Cell division protein FtsL IF561_11145 PF01795 MraW methylase family IF561_11155 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IF561_11160 PF04348 LppC putative lipoprotein IF561_11165 PF02021 Uncharacterised protein family UPF0102 IF561_11170 PF13580 SIS domain IF561_11175 PF04972 BON domain IF561_11180 PF04386 Stringent starvation protein B IF561_11185 PF02798 Glutathione S-transferase, N-terminal domain IF561_11185 PF00043 Glutathione S-transferase, C-terminal domain IF561_11190 PF02167 Cytochrome C1 family IF561_11195 PF00032 Cytochrome b(C-terminal)/b6/petD IF561_11195 PF00033 Cytochrome b/b6/petB IF561_11200 PF00355 Rieske [2Fe-2S] domain IF561_11200 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal IF561_11205 PF00380 Ribosomal protein S9/S16 IF561_11210 PF00572 Ribosomal protein L13 IF561_11215 PF03969 AFG1-like ATPase IF561_11220 PF06295 Protein of unknown function (DUF1043) IF561_11225 PF00595 PDZ domain IF561_11230 PF13180 PDZ domain IF561_11235 PF03989 DNA gyrase C-terminal domain, beta-propeller IF561_11235 PF00521 DNA gyrase/topoisomerase IV, subunit A IF561_11240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_11240 PF00986 DNA gyrase B subunit, carboxyl terminus IF561_11240 PF01751 Toprim domain IF561_11240 PF00204 DNA gyrase B IF561_11245 PF05728 Uncharacterised protein family (UPF0227) IF561_11250 PF00149 Calcineurin-like phosphoesterase IF561_11255 PF06853 Protein of unknown function (DUF1249) IF561_11260 PF00293 NUDIX domain IF561_11265 PF02321 Outer membrane efflux protein IF561_11270 PF01467 Cytidylyltransferase-like IF561_11270 PF00294 pfkB family carbohydrate kinase IF561_11275 PF03710 Glutamate-ammonia ligase adenylyltransferase IF561_11275 PF08335 GlnD PII-uridylyltransferase IF561_11280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IF561_11280 PF00672 HAMP domain IF561_11290 PF01928 CYTH domain IF561_11295 PF01865 Protein of unknown function DUF47 IF561_11300 PF01384 Phosphate transporter family IF561_11305 PF08239 Bacterial SH3 domain IF561_11315 PF13401 AAA domain IF561_11315 PF01471 Putative peptidoglycan binding domain IF561_11320 PF12627 Probable RNA and SrmB- binding site of polymerase A IF561_11320 PF01966 HD domain IF561_11320 PF01743 Poly A polymerase head domain IF561_11325 PF02673 Bacitracin resistance protein BacA IF561_11330 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) IF561_11335 PF02152 Dihydroneopterin aldolase IF561_11340 PF02660 Glycerol-3-phosphate acyltransferase IF561_11345 PF12697 Alpha/beta hydrolase family IF561_11350 PF00814 Glycoprotease family IF561_11355 PF01165 Ribosomal protein S21 IF561_11360 PF09424 Yqey-like protein IF561_11365 PF10410 DnaB-helicase binding domain of primase IF561_11365 PF08278 DNA primase DnaG DnaB-binding IF561_11365 PF08275 DNA primase catalytic core, N-terminal domain IF561_11365 PF01807 CHC2 zinc finger IF561_11370 PF04546 Sigma-70, non-essential region IF561_11370 PF04545 Sigma-70, region 4 IF561_11370 PF04539 Sigma-70 region 3 IF561_11370 PF03979 Sigma-70 factor, region 1.1 IF561_11370 PF00140 Sigma-70 factor, region 1.2 IF561_11370 PF04542 Sigma-70 region 2 IF561_11380 PF03180 NLPA lipoprotein IF561_11410 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit IF561_11410 PF02378 Phosphotransferase system, EIIC IF561_11410 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IF561_11415 PF01232 Mannitol dehydrogenase Rossmann domain IF561_11415 PF08125 Mannitol dehydrogenase C-terminal domain IF561_11420 PF05068 Mannitol repressor IF561_11425 PF13419 Haloacid dehalogenase-like hydrolase IF561_11430 PF00512 His Kinase A (phospho-acceptor) domain IF561_11430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_11430 PF00672 HAMP domain IF561_11435 PF00486 Transcriptional regulatory protein, C terminal IF561_11435 PF00072 Response regulator receiver domain IF561_11445 PF01380 SIS domain IF561_11450 PF00455 DeoR C terminal sensor domain IF561_11450 PF08220 DeoR-like helix-turn-helix domain IF561_11455 PF00224 Pyruvate kinase, barrel domain IF561_11455 PF02887 Pyruvate kinase, alpha/beta domain IF561_11465 PF00990 Diguanylate cyclase, GGDEF domain IF561_11470 PF10369 Small subunit of acetolactate synthase IF561_11475 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IF561_11475 PF00205 Thiamine pyrophosphate enzyme, central domain IF561_11475 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IF561_11480 PF00501 AMP-binding enzyme IF561_11485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_11485 PF03466 LysR substrate binding domain IF561_11495 PF01569 PAP2 superfamily IF561_11505 PF00682 HMGL-like IF561_11505 PF08502 LeuA allosteric (dimerisation) domain IF561_11510 PF00180 Isocitrate/isopropylmalate dehydrogenase IF561_11515 PF00330 Aconitase family (aconitate hydratase) IF561_11520 PF00694 Aconitase C-terminal domain IF561_11530 PF00226 DnaJ domain IF561_11530 PF05099 Tellurite resistance protein TerB IF561_11535 PF04453 LPS transport system D IF561_11535 PF03968 OstA-like protein IF561_11540 PF09312 SurA N-terminal domain IF561_11545 PF04166 Pyridoxal phosphate biosynthetic protein PdxA IF561_11550 PF00398 Ribosomal RNA adenine dimethylase IF561_11555 PF04379 ApaG domain IF561_11560 PF00149 Calcineurin-like phosphoesterase IF561_11565 PF00186 Dihydrofolate reductase IF561_11570 PF12821 Threonine/Serine exporter, ThrE IF561_11575 PF06738 Putative threonine/serine exporter IF561_11580 PF01018 GTP1/OBG IF561_11580 PF01926 50S ribosome-binding GTPase IF561_11585 PF01016 Ribosomal L27 protein IF561_11590 PF00829 Ribosomal prokaryotic L21 protein IF561_11595 PF00348 Polyprenyl synthetase IF561_11605 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain IF561_11605 PF00056 lactate/malate dehydrogenase, NAD binding domain IF561_11610 PF02863 Arginine repressor, C-terminal domain IF561_11610 PF01316 Arginine repressor, DNA binding domain IF561_11615 PF16868 NMT1-like family IF561_11630 PF00005 ABC transporter IF561_11635 PF00528 Binding-protein-dependent transport system inner membrane component IF561_11645 PF02441 Flavoprotein IF561_11650 PF01225 Mur ligase family, catalytic domain IF561_11650 PF02875 Mur ligase family, glutamate ligase domain IF561_11650 PF08245 Mur ligase middle domain IF561_11655 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain IF561_11660 PF00719 Inorganic pyrophosphatase IF561_11670 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like IF561_11675 PF04357 TamB, inner membrane protein subunit of TAM complex IF561_11680 PF01103 Surface antigen IF561_11680 PF17243 POTRA domain TamA domain 1 IF561_11685 PF01625 Peptide methionine sulfoxide reductase IF561_11690 PF06526 Protein of unknown function (DUF1107) IF561_11695 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) IF561_11700 PF10795 Protein of unknown function (DUF2607) IF561_11710 PF00005 ABC transporter IF561_11735 PF03600 Citrate transporter IF561_11735 PF02080 TrkA-C domain IF561_11740 PF00009 Elongation factor Tu GTP binding domain IF561_11745 PF01507 Phosphoadenosine phosphosulfate reductase family IF561_11750 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IF561_11750 PF10414 Sirohaem synthase dimerisation region IF561_11750 PF14824 Sirohaem biosynthesis protein central IF561_11755 PF02872 5'-nucleotidase, C-terminal domain IF561_11755 PF00149 Calcineurin-like phosphoesterase IF561_11765 PF03880 DbpA RNA binding domain IF561_11765 PF00270 DEAD/DEAH box helicase IF561_11765 PF00271 Helicase conserved C-terminal domain IF561_11770 PF13673 Acetyltransferase (GNAT) domain IF561_11780 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase IF561_11780 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IF561_11790 PF01196 Ribosomal protein L17 IF561_11795 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain IF561_11795 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain IF561_11795 PF01000 RNA polymerase Rpb3/RpoA insert domain IF561_11800 PF00163 Ribosomal protein S4/S9 N-terminal domain IF561_11800 PF01479 S4 domain IF561_11805 PF00411 Ribosomal protein S11 IF561_11810 PF00416 Ribosomal protein S13/S18 IF561_11815 PF00444 Ribosomal protein L36 IF561_11820 PF00344 SecY translocase IF561_11825 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A IF561_11830 PF00327 Ribosomal protein L30p/L7e IF561_11835 PF00333 Ribosomal protein S5, N-terminal domain IF561_11835 PF03719 Ribosomal protein S5, C-terminal domain IF561_11840 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast IF561_11845 PF00347 Ribosomal protein L6 IF561_11850 PF00410 Ribosomal protein S8 IF561_11855 PF00253 Ribosomal protein S14p/S29e IF561_11860 PF00281 Ribosomal protein L5 IF561_11860 PF00673 ribosomal L5P family C-terminus IF561_11865 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 IF561_11865 PF00467 KOW motif IF561_11870 PF00238 Ribosomal protein L14p/L23e IF561_11875 PF00366 Ribosomal protein S17 IF561_11880 PF00831 Ribosomal L29 protein IF561_11885 PF00252 Ribosomal protein L16p/L10e IF561_11890 PF07650 KH domain IF561_11890 PF00189 Ribosomal protein S3, C-terminal domain IF561_11895 PF00237 Ribosomal protein L22p/L17e IF561_11900 PF00203 Ribosomal protein S19 IF561_11905 PF03947 Ribosomal Proteins L2, C-terminal domain IF561_11905 PF00181 Ribosomal Proteins L2, RNA binding domain IF561_11910 PF00276 Ribosomal protein L23 IF561_11915 PF00573 Ribosomal protein L4/L1 family IF561_11920 PF00297 Ribosomal protein L3 IF561_11925 PF00338 Ribosomal protein S10p/S20e IF561_11930 PF01197 Ribosomal protein L31 IF561_11935 PF18319 PriA DNA helicase Cys-rich region (CRR) domain IF561_11935 PF00270 DEAD/DEAH box helicase IF561_11935 PF00271 Helicase conserved C-terminal domain IF561_11935 PF17764 3′ DNA-binding domain (3′BD) IF561_11935 PF18074 Primosomal protein N C-terminal domain IF561_11940 PF00356 Bacterial regulatory proteins, lacI family IF561_11950 PF00227 Proteasome subunit IF561_11955 PF00004 ATPase family associated with various cellular activities (AAA) IF561_11955 PF07724 AAA domain (Cdc48 subfamily) IF561_11960 PF01040 UbiA prenyltransferase family IF561_11965 PF03737 Aldolase/RraA IF561_11970 PF06005 Cell division protein ZapB IF561_11975 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded IF561_11980 PF00455 DeoR C terminal sensor domain IF561_11980 PF08220 DeoR-like helix-turn-helix domain IF561_12000 PF00121 Triosephosphate isomerase IF561_12010 PF00483 Nucleotidyl transferase IF561_12015 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IF561_12015 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IF561_12015 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain IF561_12020 PF00953 Glycosyl transferase family 4 IF561_12025 PF00535 Glycosyl transferase family 2 IF561_12060 PF02350 UDP-N-acetylglucosamine 2-epimerase IF561_12095 PF06082 Exopolysaccharide biosynthesis protein YbjH IF561_12100 PF01370 NAD dependent epimerase/dehydratase family IF561_12105 PF03279 Bacterial lipid A biosynthesis acyltransferase IF561_12110 PF01075 Glycosyltransferase family 9 (heptosyltransferase) IF561_12115 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) IF561_12130 PF00535 Glycosyl transferase family 2 IF561_12140 PF02911 Formyl transferase, C-terminal domain IF561_12140 PF00551 Formyl transferase IF561_12155 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IF561_12155 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IF561_12165 PF00975 Thioesterase domain IF561_12165 PF00501 AMP-binding enzyme IF561_12165 PF00668 Condensation domain IF561_12165 PF13193 AMP-binding enzyme C-terminal domain IF561_12165 PF00550 Phosphopantetheine attachment site IF561_12170 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family IF561_12175 PF00483 Nucleotidyl transferase IF561_12180 PF16363 GDP-mannose 4,6 dehydratase IF561_12190 PF01219 Prokaryotic diacylglycerol kinase IF561_12195 PF01075 Glycosyltransferase family 9 (heptosyltransferase) IF561_12200 PF00535 Glycosyl transferase family 2 IF561_12205 PF00535 Glycosyl transferase family 2 IF561_12210 PF05686 Glycosyl transferase family 90 IF561_12215 PF01467 Cytidylyltransferase-like IF561_12220 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain IF561_12220 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain IF561_12220 PF06827 Zinc finger found in FPG and IleRS IF561_12230 PF00471 Ribosomal protein L33 IF561_12235 PF00830 Ribosomal L28 family IF561_12240 PF04002 RadC-like JAB domain IF561_12245 PF00672 HAMP domain IF561_12245 PF17200 Single Cache domain 2 IF561_12245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IF561_12250 PF04127 DNA / pantothenate metabolism flavoprotein IF561_12250 PF02441 Flavoprotein IF561_12255 PF00440 Bacterial regulatory proteins, tetR family IF561_12260 PF03279 Bacterial lipid A biosynthesis acyltransferase IF561_12265 PF00156 Phosphoribosyl transferase domain IF561_12270 PF01138 3' exoribonuclease family, domain 1 IF561_12270 PF03725 3' exoribonuclease family, domain 2 IF561_12275 PF08340 Domain of unknown function (DUF1732) IF561_12275 PF03755 YicC-like family, N-terminal region IF561_12285 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IF561_12285 PF00005 ABC transporter IF561_12290 PF00005 ABC transporter IF561_12290 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IF561_12295 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IF561_12300 PF00528 Binding-protein-dependent transport system inner membrane component IF561_12300 PF12911 N-terminal TM domain of oligopeptide transport permease C IF561_12305 PF00528 Binding-protein-dependent transport system inner membrane component IF561_12310 PF07715 TonB-dependent Receptor Plug Domain IF561_12310 PF00593 TonB dependent receptor IF561_12325 PF01618 MotA/TolQ/ExbB proton channel family IF561_12330 PF02472 Biopolymer transport protein ExbD/TolR IF561_12345 PF00625 Guanylate kinase IF561_12350 PF01192 RNA polymerase Rpb6 IF561_12355 PF13291 ACT domain IF561_12355 PF04607 Region found in RelA / SpoT proteins IF561_12355 PF02824 TGS domain IF561_12360 PF00588 SpoU rRNA Methylase family IF561_12360 PF12105 SpoU, rRNA methylase, C-terminal IF561_12365 PF00270 DEAD/DEAH box helicase IF561_12365 PF00271 Helicase conserved C-terminal domain IF561_12365 PF17191 RecG wedge domain IF561_12370 PF00860 Permease family IF561_12375 PF00512 His Kinase A (phospho-acceptor) domain IF561_12375 PF00672 HAMP domain IF561_12375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_12380 PF00072 Response regulator receiver domain IF561_12380 PF00486 Transcriptional regulatory protein, C terminal IF561_12390 PF01272 Transcription elongation factor, GreA/GreB, C-term IF561_12390 PF03449 Transcription elongation factor, N-terminal IF561_12400 PF16921 Tex protein YqgF-like domain IF561_12400 PF00575 S1 RNA binding domain IF561_12400 PF17674 HHH domain IF561_12400 PF09371 Tex-like protein N-terminal domain IF561_12410 PF00561 alpha/beta hydrolase fold IF561_12415 PF00156 Phosphoribosyl transferase domain IF561_12420 PF01521 Iron-sulphur cluster biosynthesis IF561_12420 PF01106 NifU-like domain IF561_12425 PF00293 NUDIX domain IF561_12430 PF00459 Inositol monophosphatase family IF561_12435 PF01203 Type II secretion system (T2SS), protein N IF561_12440 PF04612 Type II secretion system (T2SS), protein M IF561_12445 PF12693 GspL periplasmic domain IF561_12445 PF05134 Type II secretion system (T2SS), protein L IF561_12450 PF03934 Type II secretion system (T2SS), protein K IF561_12455 PF11612 Type II secretion system (T2SS), protein J IF561_12455 PF07963 Prokaryotic N-terminal methylation motif IF561_12460 PF02501 Type II secretion system (T2SS), protein I IF561_12460 PF07963 Prokaryotic N-terminal methylation motif IF561_12465 PF12019 Type II transport protein GspH IF561_12470 PF07963 Prokaryotic N-terminal methylation motif IF561_12470 PF08334 Type II secretion system (T2SS), protein G IF561_12475 PF00482 Type II secretion system (T2SS), protein F IF561_12480 PF00437 Type II/IV secretion system protein IF561_12485 PF00263 Bacterial type II and III secretion system protein IF561_12485 PF03958 Bacterial type II/III secretion system short domain IF561_12490 PF11356 Type II secretion system protein C IF561_12495 PF01479 S4 domain IF561_12500 PF01430 Hsp33 protein IF561_12505 PF01293 Phosphoenolpyruvate carboxykinase IF561_12515 PF00583 Acetyltransferase (GNAT) family IF561_12515 PF09500 Putative thioesterase (yiiD_Cterm) IF561_12520 PF02580 D-Tyr-tRNA(Tyr) deacylase IF561_12525 PF03631 Virulence factor BrkB IF561_12540 PF00679 Elongation factor G C-terminus IF561_12540 PF00009 Elongation factor Tu GTP binding domain IF561_12540 PF03144 Elongation factor Tu domain 2 IF561_12545 PF03951 Glutamine synthetase, beta-Grasp domain IF561_12545 PF00120 Glutamine synthetase, catalytic domain IF561_12555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_12555 PF00989 PAS fold IF561_12555 PF00512 His Kinase A (phospho-acceptor) domain IF561_12560 PF02954 Bacterial regulatory protein, Fis family IF561_12560 PF00072 Response regulator receiver domain IF561_12560 PF00158 Sigma-54 interaction domain IF561_12565 PF03707 Bacterial signalling protein N terminal repeat IF561_12565 PF00990 Diguanylate cyclase, GGDEF domain IF561_12565 PF00563 EAL domain IF561_12570 PF00962 Adenosine/AMP deaminase IF561_12575 PF04055 Radical SAM superfamily IF561_12575 PF06969 HemN C-terminal domain IF561_12580 PF10675 Protein of unknown function (DUF2489) IF561_12585 PF04220 Der GTPase activator (YihI) IF561_12595 PF00034 Cytochrome c IF561_12600 PF01926 50S ribosome-binding GTPase IF561_12605 PF01612 3'-5' exonuclease IF561_12605 PF01367 5'-3' exonuclease, C-terminal SAM fold IF561_12605 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain IF561_12605 PF00476 DNA polymerase family A IF561_12620 PF00490 Delta-aminolevulinic acid dehydratase IF561_12625 PF01026 TatD related DNase IF561_12630 PF00902 Sec-independent protein translocase protein (TatC) IF561_12635 PF02416 mttA/Hcf106 family IF561_12640 PF02416 mttA/Hcf106 family IF561_12645 PF03109 ABC1 family IF561_12650 PF02036 SCP-2 sterol transfer family IF561_12655 PF01209 ubiE/COQ5 methyltransferase family IF561_12660 PF02646 RmuC family IF561_12670 PF00990 Diguanylate cyclase, GGDEF domain IF561_12670 PF00563 EAL domain IF561_12670 PF03707 Bacterial signalling protein N terminal repeat IF561_12675 PF01594 AI-2E family transporter IF561_12725 PF04972 BON domain IF561_12730 PF00158 Sigma-54 interaction domain IF561_12730 PF01590 GAF domain IF561_12730 PF02954 Bacterial regulatory protein, Fis family IF561_12740 PF10625 Universal stress protein B (UspB) IF561_12750 PF00582 Universal stress protein family IF561_12755 PF00892 EamA-like transporter family IF561_12765 PF04445 Putative SAM-dependent methyltransferase IF561_12770 PF00563 EAL domain IF561_12770 PF00990 Diguanylate cyclase, GGDEF domain IF561_12770 PF08448 PAS fold IF561_12775 PF01037 Lrp/AsnC ligand binding domain IF561_12780 PF01432 Peptidase family M3 IF561_12785 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ IF561_12790 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IF561_12790 PF07992 Pyridine nucleotide-disulphide oxidoreductase IF561_12860 PF03466 LysR substrate binding domain IF561_12860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_12865 PF01048 Phosphorylase superfamily IF561_12870 PF01081 KDPG and KHG aldolase IF561_12875 PF02447 GntP family permease IF561_12880 PF01202 Shikimate kinase IF561_12885 PF00920 Dehydratase family IF561_12890 PF00893 Small Multidrug Resistance protein IF561_12895 PF00893 Small Multidrug Resistance protein IF561_12900 PF03466 LysR substrate binding domain IF561_12900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_12905 PF00356 Bacterial regulatory proteins, lacI family IF561_12905 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family IF561_12910 PF00069 Protein kinase domain IF561_12940 PF00528 Binding-protein-dependent transport system inner membrane component IF561_12940 PF12911 N-terminal TM domain of oligopeptide transport permease C IF561_12945 PF00528 Binding-protein-dependent transport system inner membrane component IF561_12950 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IF561_12955 PF00005 ABC transporter IF561_12955 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IF561_12960 PF13419 Haloacid dehalogenase-like hydrolase IF561_12990 PF13442 Cytochrome C oxidase, cbb3-type, subunit III IF561_12995 PF13361 UvrD-like helicase C-terminal domain IF561_12995 PF00580 UvrD/REP helicase N-terminal domain IF561_13000 PF16295 Tetracyclin repressor-like, C-terminal domain IF561_13000 PF00440 Bacterial regulatory proteins, tetR family IF561_13005 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IF561_13010 PF00873 AcrB/AcrD/AcrF family IF561_13015 PF04380 Membrane fusogenic activity IF561_13020 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain IF561_13020 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain IF561_13025 PF03466 LysR substrate binding domain IF561_13025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_13060 PF00132 Bacterial transferase hexapeptide (six repeats) IF561_13065 PF07369 Protein of unknown function (DUF1488) IF561_13070 PF18317 Shikimate 5'-dehydrogenase C-terminal domain IF561_13070 PF01488 Shikimate / quinate 5-dehydrogenase IF561_13070 PF08501 Shikimate dehydrogenase substrate binding domain IF561_13075 PF01218 Coproporphyrinogen III oxidase IF561_13080 PF01300 Telomere recombination IF561_13085 PF00731 AIR carboxylase IF561_13090 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain IF561_13090 PF02222 ATP-grasp domain IF561_13095 PF01396 Topoisomerase DNA binding C4 zinc finger IF561_13100 PF04361 Protein of unknown function (DUF494) IF561_13105 PF17782 DprA winged helix domain IF561_13105 PF02481 DNA recombination-mediator protein A IF561_13115 PF01327 Polypeptide deformylase IF561_13120 PF00551 Formyl transferase IF561_13120 PF02911 Formyl transferase, C-terminal domain IF561_13125 PF01029 NusB family IF561_13125 PF01189 16S rRNA methyltransferase RsmB/F IF561_13130 PF02254 TrkA-N domain IF561_13130 PF02080 TrkA-C domain IF561_13135 PF02386 Cation transport protein IF561_13145 PF03006 Haemolysin-III related IF561_13150 PF07070 SpoOM protein IF561_13160 PF06288 Protein of unknown function (DUF1040) IF561_13165 PF13746 4Fe-4S dicluster domain IF561_13165 PF12801 4Fe-4S binding domain IF561_13165 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase IF561_13170 PF01636 Phosphotransferase enzyme family IF561_13175 PF01323 DSBA-like thioredoxin domain IF561_13180 PF01553 Acyltransferase IF561_13225 PF00313 'Cold-shock' DNA-binding domain IF561_13250 PF00313 'Cold-shock' DNA-binding domain IF561_13260 PF12221 Bacterial membrane protein N terminal IF561_13260 PF01145 SPFH domain / Band 7 family IF561_13270 PF06965 Na+/H+ antiporter 1 IF561_13275 PF00330 Aconitase family (aconitate hydratase) IF561_13275 PF00694 Aconitase C-terminal domain IF561_13280 PF00313 'Cold-shock' DNA-binding domain IF561_13315 PF01078 Magnesium chelatase, subunit ChlI IF561_13315 PF13335 Magnesium chelatase, subunit ChlI C-terminal IF561_13320 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IF561_13320 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IF561_13320 PF00205 Thiamine pyrophosphate enzyme, central domain IF561_13330 PF01063 Amino-transferase class IV IF561_13335 PF00920 Dehydratase family IF561_13340 PF00291 Pyridoxal-phosphate dependent enzyme IF561_13340 PF00585 C-terminal regulatory domain of Threonine dehydratase IF561_13345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_13345 PF03466 LysR substrate binding domain IF561_13350 PF07690 Major Facilitator Superfamily IF561_13355 PF00497 Bacterial extracellular solute-binding proteins, family 3 IF561_13360 PF00528 Binding-protein-dependent transport system inner membrane component IF561_13365 PF12804 MobA-like NTP transferase domain IF561_13365 PF00132 Bacterial transferase hexapeptide (six repeats) IF561_13370 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain IF561_13370 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain IF561_13375 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IF561_13375 PF02874 ATP synthase alpha/beta family, beta-barrel domain IF561_13380 PF00231 ATP synthase IF561_13385 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IF561_13385 PF00306 ATP synthase alpha/beta chain, C terminal domain IF561_13385 PF02874 ATP synthase alpha/beta family, beta-barrel domain IF561_13390 PF00213 ATP synthase delta (OSCP) subunit IF561_13395 PF00430 ATP synthase B/B' CF(0) IF561_13400 PF00137 ATP synthase subunit C IF561_13405 PF00119 ATP synthase A chain IF561_13410 PF03899 ATP synthase I chain IF561_13415 PF17762 HTH domain found in ParB protein IF561_13415 PF02195 ParB-like nuclease domain IF561_13420 PF13614 AAA domain IF561_13425 PF02527 rRNA small subunit methyltransferase G IF561_13430 PF01134 Glucose inhibited division protein A IF561_13430 PF13932 GidA associated domain IF561_13435 PF00258 Flavodoxin IF561_13440 PF10396 GTP-binding protein TrmE N-terminus IF561_13440 PF01926 50S ribosome-binding GTPase IF561_13440 PF12631 MnmE helical domain IF561_13445 PF02096 60Kd inner membrane protein IF561_13445 PF14849 YidC periplasmic domain IF561_13450 PF01809 Putative membrane protein insertion efficiency factor IF561_13455 PF00825 Ribonuclease P IF561_13460 PF00468 Ribosomal protein L34 IF561_13465 PF00005 ABC transporter IF561_13470 PF00528 Binding-protein-dependent transport system inner membrane component IF561_13475 PF00497 Bacterial extracellular solute-binding proteins, family 3 IF561_13480 PF00308 Bacterial dnaA protein IF561_13480 PF11638 DnaA N-terminal domain IF561_13480 PF08299 Bacterial dnaA protein helix-turn-helix IF561_13485 PF00712 DNA polymerase III beta subunit, N-terminal domain IF561_13485 PF02767 DNA polymerase III beta subunit, central domain IF561_13485 PF02768 DNA polymerase III beta subunit, C-terminal domain IF561_13490 PF02463 RecF/RecN/SMC N terminal domain IF561_13495 PF00204 DNA gyrase B IF561_13495 PF00986 DNA gyrase B subunit, carboxyl terminus IF561_13495 PF18053 DNA gyrase B subunit insert domain IF561_13495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_13495 PF01751 Toprim domain IF561_13505 PF00011 Hsp20/alpha crystallin family IF561_13510 PF00155 Aminotransferase class I and II IF561_13515 PF00128 Alpha amylase, catalytic domain IF561_13520 PF05746 DALR anticodon binding domain IF561_13520 PF02092 Glycyl-tRNA synthetase beta subunit IF561_13525 PF02091 Glycyl-tRNA synthetase alpha subunit IF561_13530 PF01169 Uncharacterized protein family UPF0016 IF561_13540 PF01206 Sulfurtransferase TusA IF561_13550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_13550 PF03466 LysR substrate binding domain IF561_13555 PF08240 Alcohol dehydrogenase GroES-like domain IF561_13555 PF00107 Zinc-binding dehydrogenase IF561_13560 PF02803 Thiolase, C-terminal domain IF561_13560 PF00108 Thiolase, N-terminal domain IF561_13565 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IF561_13565 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IF561_13565 PF00378 Enoyl-CoA hydratase/isomerase IF561_13570 PF09186 Domain of unknown function (DUF1949) IF561_13570 PF01205 Uncharacterized protein family UPF0029 IF561_13575 PF02386 Cation transport protein IF561_13580 PF12724 Flavodoxin domain IF561_13625 PF02537 CrcB-like protein, Camphor Resistance (CrcB) IF561_13630 PF01964 Radical SAM ThiC family IF561_13630 PF13667 ThiC-associated domain IF561_13635 PF02581 Thiamine monophosphate synthase IF561_13640 PF00899 ThiF family IF561_13645 PF02597 ThiS family IF561_13650 PF05690 Thiazole biosynthesis protein ThiG IF561_13655 PF04055 Radical SAM superfamily IF561_13655 PF06968 Biotin and Thiamin Synthesis associated domain IF561_13660 PF00557 Metallopeptidase family M24 IF561_13660 PF01321 Creatinase/Prolidase N-terminal domain IF561_13660 PF00557 Metallopeptidase family M24 IF561_13660 PF01321 Creatinase/Prolidase N-terminal domain IF561_13665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_13665 PF03466 LysR substrate binding domain IF561_13670 PF07690 Major Facilitator Superfamily IF561_13690 PF05114 Protein of unknown function (DUF692) IF561_13700 PF00580 UvrD/REP helicase N-terminal domain IF561_13700 PF13361 UvrD-like helicase C-terminal domain IF561_13710 PF01810 LysE type translocator IF561_13720 PF00892 EamA-like transporter family IF561_13725 PF16124 RecQ zinc-binding IF561_13725 PF09382 RQC domain IF561_13725 PF00271 Helicase conserved C-terminal domain IF561_13725 PF00570 HRDC domain IF561_13725 PF00270 DEAD/DEAH box helicase IF561_13735 PF02592 Putative vitamin uptake transporter IF561_13740 PF02541 Ppx/GppA phosphatase family IF561_13745 PF00270 DEAD/DEAH box helicase IF561_13745 PF00271 Helicase conserved C-terminal domain IF561_13750 PF00085 Thioredoxin IF561_13755 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IF561_13755 PF07498 Rho termination factor, N-terminal domain IF561_13755 PF07497 Rho termination factor, RNA-binding domain IF561_13765 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase IF561_13770 PF00111 2Fe-2S iron-sulfur cluster binding domain IF561_13775 PF00175 Oxidoreductase NAD-binding domain IF561_13815 PF07219 HemY protein N-terminus IF561_13820 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase IF561_13825 PF02602 Uroporphyrinogen-III synthase HemD IF561_13830 PF03900 Porphobilinogen deaminase, C-terminal domain IF561_13830 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain IF561_13835 PF12633 Adenylate cyclase NT domain IF561_13835 PF01295 Adenylate cyclase, class-I IF561_13840 PF01491 Frataxin-like domain IF561_13850 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain IF561_13850 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain IF561_13855 PF01678 Diaminopimelate epimerase IF561_13860 PF04340 Protein of unknown function, DUF484 IF561_13865 PF02899 Phage integrase, N-terminal SAM-like domain IF561_13865 PF00589 Phage integrase family IF561_13870 PF13419 Haloacid dehalogenase-like hydrolase IF561_13875 PF08495 FIST N domain IF561_13875 PF10442 FIST C domain IF561_13875 PF00990 Diguanylate cyclase, GGDEF domain IF561_13875 PF00563 EAL domain IF561_13880 PF03942 DTW domain IF561_13900 PF12146 Serine aminopeptidase, S33 IF561_13905 PF01810 LysE type translocator IF561_13910 PF08668 HDOD domain IF561_13910 PF00563 EAL domain IF561_13915 PF01022 Bacterial regulatory protein, arsR family IF561_13920 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IF561_13920 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IF561_13970 PF01914 MarC family integral membrane protein IF561_13985 PF00448 SRP54-type protein, GTPase domain IF561_13985 PF02881 SRP54-type protein, helical bundle domain IF561_13990 PF00005 ABC transporter IF561_13995 PF18075 FtsX extracellular domain IF561_14000 PF04542 Sigma-70 region 2 IF561_14000 PF04545 Sigma-70, region 4 IF561_14000 PF00140 Sigma-70 factor, region 1.2 IF561_14005 PF00581 Rhodanese-like domain IF561_14010 PF01694 Rhomboid family IF561_14010 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease IF561_14015 PF03748 Flagellar basal body-associated protein FliL IF561_14020 PF04345 Chorismate lyase IF561_14025 PF01040 UbiA prenyltransferase family IF561_14030 PF01553 Acyltransferase IF561_14035 PF01726 LexA DNA binding domain IF561_14035 PF00717 Peptidase S24-like IF561_14040 PF04072 Leucine carboxyl methyltransferase IF561_14045 PF01554 MatE IF561_14050 PF07992 Pyridine nucleotide-disulphide oxidoreductase IF561_14050 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IF561_14055 PF00440 Bacterial regulatory proteins, tetR family IF561_14065 PF05958 tRNA (Uracil-5-)-methyltransferase IF561_14070 PF07715 TonB-dependent Receptor Plug Domain IF561_14070 PF00593 TonB dependent receptor IF561_14080 PF01177 Asp/Glu/Hydantoin racemase IF561_14145 PF13091 PLD-like domain IF561_14155 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain IF561_14155 PF01565 FAD binding domain IF561_14160 PF08279 HTH domain IF561_14160 PF03099 Biotin/lipoate A/B protein ligase family IF561_14160 PF02237 Biotin protein ligase C terminal domain IF561_14165 PF00485 Phosphoribulokinase / Uridine kinase family IF561_14190 PF03144 Elongation factor Tu domain 2 IF561_14190 PF03143 Elongation factor Tu C-terminal domain IF561_14190 PF00009 Elongation factor Tu GTP binding domain IF561_14195 PF00584 SecE/Sec61-gamma subunits of protein translocation complex IF561_14200 PF00467 KOW motif IF561_14200 PF02357 Transcription termination factor nusG IF561_14205 PF03946 Ribosomal protein L11, N-terminal domain IF561_14205 PF00298 Ribosomal protein L11, RNA binding domain IF561_14210 PF00687 Ribosomal protein L1p/L10e family IF561_14215 PF00466 Ribosomal protein L10 IF561_14220 PF00542 Ribosomal protein L7/L12 C-terminal domain IF561_14220 PF16320 Ribosomal protein L7/L12 dimerisation domain IF561_14225 PF04563 RNA polymerase beta subunit IF561_14225 PF04561 RNA polymerase Rpb2, domain 2 IF561_14225 PF00562 RNA polymerase Rpb2, domain 6 IF561_14225 PF10385 RNA polymerase beta subunit external 1 domain IF561_14225 PF04560 RNA polymerase Rpb2, domain 7 IF561_14225 PF04565 RNA polymerase Rpb2, domain 3 IF561_14230 PF04983 RNA polymerase Rpb1, domain 3 IF561_14230 PF00623 RNA polymerase Rpb1, domain 2 IF561_14230 PF04997 RNA polymerase Rpb1, domain 1 IF561_14230 PF04998 RNA polymerase Rpb1, domain 5 IF561_14230 PF05000 RNA polymerase Rpb1, domain 4 IF561_14235 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ IF561_14240 PF09297 NADH pyrophosphatase zinc ribbon domain IF561_14240 PF00293 NUDIX domain IF561_14255 PF01208 Uroporphyrinogen decarboxylase (URO-D) IF561_14260 PF03167 Uracil DNA glycosylase superfamily IF561_14265 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IF561_14270 PF04222 Protein of unknown function (DUF416) IF561_14275 PF00571 CBS domain IF561_14275 PF01595 Cyclin M transmembrane N-terminal domain IF561_14280 PF00216 Bacterial DNA-binding protein IF561_14290 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain IF561_14290 PF02843 Phosphoribosylglycinamide synthetase, C domain IF561_14290 PF02844 Phosphoribosylglycinamide synthetase, N domain IF561_14295 PF02142 MGS-like domain IF561_14295 PF01808 AICARFT/IMPCHase bienzyme IF561_14300 PF13411 MerR HTH family regulatory protein IF561_14310 PF18500 CadC C-terminal domain 1 IF561_14310 PF00486 Transcriptional regulatory protein, C terminal IF561_14315 PF13520 Amino acid permease IF561_14320 PF01276 Orn/Lys/Arg decarboxylase, major domain IF561_14320 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain IF561_14320 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain IF561_14375 PF00990 Diguanylate cyclase, GGDEF domain IF561_14375 PF05230 MASE2 domain IF561_14380 PF00005 ABC transporter IF561_14380 PF12848 ABC transporter IF561_14385 PF07690 Major Facilitator Superfamily IF561_14390 PF02954 Bacterial regulatory protein, Fis family IF561_14395 PF01207 Dihydrouridine synthase (Dus) IF561_14405 PF02785 Biotin carboxylase C-terminal domain IF561_14405 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IF561_14405 PF00289 Biotin carboxylase, N-terminal domain IF561_14410 PF00364 Biotin-requiring enzyme IF561_14415 PF01220 Dehydroquinase class II IF561_14420 PF16177 Acetyl-coenzyme A synthetase N-terminus IF561_14420 PF00501 AMP-binding enzyme IF561_14420 PF13193 AMP-binding enzyme C-terminal domain IF561_14435 PF12832 MFS_1 like family IF561_14440 PF00672 HAMP domain IF561_14440 PF01627 Hpt domain IF561_14440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_14440 PF00512 His Kinase A (phospho-acceptor) domain IF561_14440 PF00072 Response regulator receiver domain IF561_14445 PF00206 Lyase IF561_14445 PF10415 Fumarase C C-terminus IF561_14460 PF00474 Sodium:solute symporter family IF561_14470 PF02080 TrkA-C domain IF561_14470 PF00999 Sodium/hydrogen exchanger family IF561_14470 PF03471 Transporter associated domain IF561_14475 PF00196 Bacterial regulatory proteins, luxR family IF561_14475 PF00072 Response regulator receiver domain IF561_14480 PF11412 Disulphide bond corrector protein DsbC IF561_14480 PF02683 Cytochrome C biogenesis protein transmembrane region IF561_14485 PF03605 Anaerobic c4-dicarboxylate membrane transporter IF561_14490 PF10415 Fumarase C C-terminus IF561_14490 PF00206 Lyase IF561_14495 PF04186 FxsA cytoplasmic membrane protein IF561_14500 PF00588 SpoU rRNA Methylase family IF561_14505 PF02777 Iron/manganese superoxide dismutases, C-terminal domain IF561_14505 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain IF561_14510 PF16527 Two-component sensor protein CpxA, periplasmic domain IF561_14510 PF00672 HAMP domain IF561_14510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_14510 PF00512 His Kinase A (phospho-acceptor) domain IF561_14515 PF00072 Response regulator receiver domain IF561_14515 PF00486 Transcriptional regulatory protein, C terminal IF561_14520 PF07813 LTXXQ motif family protein IF561_14525 PF16916 Dimerisation domain of Zinc Transporter IF561_14525 PF01545 Cation efflux family IF561_14530 PF00365 Phosphofructokinase IF561_14535 PF01554 MatE IF561_14540 PF00166 Chaperonin 10 Kd subunit IF561_14545 PF00118 TCP-1/cpn60 chaperonin family IF561_14555 PF02308 MgtC family IF561_14560 PF00842 Alanine racemase, C-terminal domain IF561_14560 PF01168 Alanine racemase, N-terminal domain IF561_14565 PF04055 Radical SAM superfamily IF561_14570 PF01132 Elongation factor P (EF-P) OB domain IF561_14570 PF08207 Elongation factor P (EF-P) KOW-like domain IF561_14570 PF09285 Elongation factor P, C-terminal IF561_14580 PF02313 Fumarate reductase subunit D IF561_14585 PF02300 Fumarate reductase subunit C IF561_14590 PF13085 2Fe-2S iron-sulfur cluster binding domain IF561_14590 PF13183 4Fe-4S dicluster domain IF561_14595 PF00890 FAD binding domain IF561_14595 PF02910 Fumarate reductase flavoprotein C-term IF561_14600 PF00152 tRNA synthetases class II (D, K and N) IF561_14610 PF08360 QacR-like protein, C-terminal region IF561_14610 PF00440 Bacterial regulatory proteins, tetR family IF561_14620 PF01551 Peptidase family M23 IF561_14625 PF06426 Serine acetyltransferase, N-terminal IF561_14625 PF00132 Bacterial transferase hexapeptide (six repeats) IF561_14630 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus IF561_14630 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IF561_14635 PF02556 Preprotein translocase subunit SecB IF561_14640 PF00581 Rhodanese-like domain IF561_14645 PF06415 BPG-independent PGAM N-terminus (iPGM_N) IF561_14645 PF01676 Metalloenzyme superfamily IF561_14655 PF00672 HAMP domain IF561_14655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IF561_14660 PF00939 Sodium:sulfate symporter transmembrane region IF561_14665 PF02666 Phosphatidylserine decarboxylase IF561_14670 PF03193 RsgA GTPase IF561_14675 PF00929 Exonuclease IF561_14745 PF08331 Domain of unknown function (DUF1730) IF561_14750 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE IF561_14755 PF01520 N-acetylmuramoyl-L-alanine amidase IF561_14760 PF08676 MutL C terminal dimerisation domain IF561_14760 PF01119 DNA mismatch repair protein, C-terminal domain IF561_14770 PF17209 Hfq protein IF561_14775 PF13167 GTP-binding GTPase N-terminal IF561_14775 PF01926 50S ribosome-binding GTPase IF561_14775 PF16360 GTP-binding GTPase Middle Region IF561_14780 PF01145 SPFH domain / Band 7 family IF561_14780 PF12221 Bacterial membrane protein N terminal IF561_14785 PF01145 SPFH domain / Band 7 family IF561_14790 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) IF561_14795 PF00709 Adenylosuccinate synthetase IF561_14800 PF08238 Sel1 repeat IF561_14805 PF00175 Oxidoreductase NAD-binding domain IF561_14805 PF00970 Oxidoreductase FAD-binding domain IF561_14805 PF00042 Globin IF561_14810 PF02082 Transcriptional regulator IF561_14815 PF00575 S1 RNA binding domain IF561_14815 PF08461 Ribonuclease R winged-helix domain IF561_14815 PF08206 Ribonuclease B OB domain IF561_14815 PF17876 Cold shock domain IF561_14815 PF00773 RNB domain IF561_14820 PF00588 SpoU rRNA Methylase family IF561_14820 PF08032 RNA 2'-O ribose methyltransferase substrate binding IF561_14825 PF13419 Haloacid dehalogenase-like hydrolase IF561_14830 PF00579 tRNA synthetases class I (W and Y) IF561_14845 PF00117 Glutamine amidotransferase class-I IF561_14850 PF00202 Aminotransferase class-III IF561_14855 PF04958 Arginine N-succinyltransferase beta subunit IF561_14860 PF00171 Aldehyde dehydrogenase family IF561_14870 PF13545 Crp-like helix-turn-helix domain IF561_14870 PF00027 Cyclic nucleotide-binding domain IF561_14875 PF00485 Phosphoribulokinase / Uridine kinase family IF561_14880 PF06794 Uncharacterised protein family (UPF0270) IF561_14885 PF00561 alpha/beta hydrolase fold IF561_14895 PF12848 ABC transporter IF561_14895 PF00005 ABC transporter IF561_14900 PF02525 Flavodoxin-like fold IF561_14905 PF00999 Sodium/hydrogen exchanger family IF561_14905 PF02254 TrkA-N domain IF561_14915 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IF561_14920 PF01112 Asparaginase IF561_14925 PF04102 SlyX IF561_14935 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IF561_14935 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase IF561_14940 PF13309 HTH domain IF561_14940 PF08348 YheO-like PAS domain IF561_14945 PF02635 DsrE/DsrF-like family IF561_14950 PF02635 DsrE/DsrF-like family IF561_14955 PF04077 DsrH like protein IF561_14960 PF00164 Ribosomal protein S12/S23 IF561_14965 PF00177 Ribosomal protein S7p/S5e IF561_14970 PF00679 Elongation factor G C-terminus IF561_14970 PF14492 Elongation Factor G, domain II IF561_14970 PF03144 Elongation factor Tu domain 2 IF561_14970 PF00009 Elongation factor Tu GTP binding domain IF561_14970 PF03764 Elongation factor G, domain IV IF561_14975 PF00009 Elongation factor Tu GTP binding domain IF561_14975 PF03144 Elongation factor Tu domain 2 IF561_14975 PF03143 Elongation factor Tu C-terminal domain IF561_14980 PF04324 BFD-like [2Fe-2S] binding domain IF561_14985 PF00210 Ferritin-like domain IF561_14990 PF00390 Malic enzyme, N-terminal domain IF561_14990 PF03949 Malic enzyme, NAD binding domain IF561_14995 PF01340 Met Apo-repressor, MetJ IF561_15000 PF01053 Cys/Met metabolism PLP-dependent enzyme IF561_15005 PF00696 Amino acid kinase family IF561_15005 PF00742 Homoserine dehydrogenase IF561_15005 PF03447 Homoserine dehydrogenase, NAD binding domain IF561_15010 PF02219 Methylenetetrahydrofolate reductase IF561_15020 PF00311 Phosphoenolpyruvate carboxylase IF561_15025 PF01546 Peptidase family M20/M25/M40 IF561_15025 PF07687 Peptidase dimerisation domain IF561_15030 PF01118 Semialdehyde dehydrogenase, NAD binding domain IF561_15030 PF02774 Semialdehyde dehydrogenase, dimerisation domain IF561_15035 PF00696 Amino acid kinase family IF561_15040 PF00764 Arginosuccinate synthase IF561_15045 PF00583 Acetyltransferase (GNAT) family IF561_15045 PF14698 Argininosuccinate lyase C-terminal IF561_15045 PF00206 Lyase IF561_15055 PF00462 Glutaredoxin IF561_15055 PF08534 Redoxin IF561_15060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_15060 PF03466 LysR substrate binding domain IF561_15065 PF17092 Penicillin-binding protein OB-like domain IF561_15065 PF00912 Transglycosylase IF561_15065 PF00905 Penicillin binding protein transpeptidase domain IF561_15075 PF05137 Fimbrial assembly protein (PilN) IF561_15085 PF04351 Pilus assembly protein, PilP IF561_15090 PF11741 AMIN domain IF561_15090 PF00263 Bacterial type II and III secretion system protein IF561_15090 PF03958 Bacterial type II/III secretion system short domain IF561_15090 PF07660 Secretin and TonB N terminus short domain IF561_15095 PF01202 Shikimate kinase IF561_15100 PF01761 3-dehydroquinate synthase IF561_15110 PF02086 D12 class N6 adenine-specific DNA methyltransferase IF561_15115 PF00834 Ribulose-phosphate 3 epimerase family IF561_15120 PF01250 Ribosomal protein S6 IF561_15125 PF00436 Single-strand binding protein family IF561_15130 PF01084 Ribosomal protein S18 IF561_15135 PF03948 Ribosomal protein L9, C-terminal domain IF561_15135 PF01281 Ribosomal protein L9, N-terminal domain IF561_15145 PF00772 DnaB-like helicase N terminal domain IF561_15145 PF03796 DnaB-like helicase C terminal domain IF561_15150 PF00842 Alanine racemase, C-terminal domain IF561_15150 PF01168 Alanine racemase, N-terminal domain IF561_15160 PF01894 Uncharacterised protein family UPF0047 IF561_15165 PF00342 Phosphoglucose isomerase IF561_15175 PF01475 Ferric uptake regulator family IF561_15180 PF01207 Dihydrouridine synthase (Dus) IF561_15200 PF00667 FAD binding domain IF561_15200 PF00258 Flavodoxin IF561_15200 PF00175 Oxidoreductase NAD-binding domain IF561_15205 PF01077 Nitrite and sulphite reductase 4Fe-4S domain IF561_15205 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IF561_15210 PF01507 Phosphoadenosine phosphosulfate reductase family IF561_15270 PF00999 Sodium/hydrogen exchanger family IF561_15275 PF02310 B12 binding domain IF561_15275 PF02607 B12 binding domain IF561_15275 PF02965 Vitamin B12 dependent methionine synthase, activation domain IF561_15275 PF00809 Pterin binding enzyme IF561_15275 PF02574 Homocysteine S-methyltransferase IF561_15280 PF00696 Amino acid kinase family IF561_15280 PF01842 ACT domain IF561_15285 PF00266 Aminotransferase class-V IF561_15295 PF00005 ABC transporter IF561_15295 PF17755 UvrA DNA-binding domain IF561_15295 PF17760 UvrA interaction domain IF561_15300 PF00483 Nucleotidyl transferase IF561_15305 PF00196 Bacterial regulatory proteins, luxR family IF561_15310 PF00436 Single-strand binding protein family IF561_15315 PF00563 EAL domain IF561_15315 PF17157 Gammaproteobacterial periplasmic sensor domain IF561_15315 PF00990 Diguanylate cyclase, GGDEF domain IF561_15335 PF07660 Secretin and TonB N terminus short domain IF561_15335 PF11741 AMIN domain IF561_15335 PF00263 Bacterial type II and III secretion system protein IF561_15335 PF03958 Bacterial type II/III secretion system short domain IF561_15340 PF01471 Putative peptidoglycan binding domain IF561_15340 PF13401 AAA domain IF561_15350 PF00437 Type II/IV secretion system protein IF561_15350 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain IF561_15355 PF00482 Type II secretion system (T2SS), protein F IF561_15365 PF07963 Prokaryotic N-terminal methylation motif IF561_15405 PF04085 rod shape-determining protein MreC IF561_15410 PF04093 rod shape-determining protein MreD IF561_15415 PF02545 Maf-like protein IF561_15420 PF10150 Ribonuclease E/G family IF561_15420 PF00575 S1 RNA binding domain IF561_15425 PF13502 AsmA-like C-terminal region IF561_15425 PF13116 Protein of unknown function IF561_15430 PF00795 Carbon-nitrogen hydrolase IF561_15435 PF01523 Putative modulator of DNA gyrase IF561_15440 PF02562 PhoH-like protein IF561_15440 PF13638 PIN domain IF561_15445 PF12137 RNA polymerase recycling family C-terminal IF561_15445 PF00176 SNF2 family N-terminal domain IF561_15445 PF18339 RapA N-terminal Tudor like domain 1 IF561_15445 PF18337 RapA N-terminal Tudor like domain IF561_15445 PF00271 Helicase conserved C-terminal domain IF561_15455 PF00849 RNA pseudouridylate synthase IF561_15460 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IF561_15460 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IF561_15465 PF04751 Protein of unknown function (DUF615) IF561_15470 PF01523 Putative modulator of DNA gyrase IF561_15475 PF03448 MgtE intracellular N domain IF561_15475 PF01769 Divalent cation transporter IF561_15475 PF00571 CBS domain IF561_15480 PF00381 PTS HPr component phosphorylation site IF561_15485 PF03668 P-loop ATPase protein family IF561_15490 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IF561_15495 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein IF561_15500 PF00309 Sigma-54 factor, Activator interacting domain (AID) IF561_15500 PF04963 Sigma-54 factor, core binding domain IF561_15500 PF04552 Sigma-54, DNA binding domain IF561_15505 PF00005 ABC transporter IF561_15505 PF12399 Branched-chain amino acid ATP-binding cassette transporter IF561_15510 PF03968 OstA-like protein IF561_15520 PF01380 SIS domain IF561_15520 PF00571 CBS domain IF561_15525 PF01699 Sodium/calcium exchanger protein IF561_15530 PF00005 ABC transporter IF561_15535 PF02405 Permease MlaE IF561_15540 PF02470 MlaD protein IF561_15545 PF05494 MlaC protein IF561_15555 PF01722 BolA-like protein IF561_15560 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) IF561_15565 PF01553 Acyltransferase IF561_15570 PF01042 Endoribonuclease L-PSP IF561_15575 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain IF561_15575 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain IF561_15580 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IF561_15580 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IF561_15590 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IF561_15590 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IF561_15600 PF06877 Regulator of ribonuclease activity B IF561_15610 PF00583 Acetyltransferase (GNAT) family IF561_15620 PF08264 Anticodon-binding domain of tRNA IF561_15620 PF00133 tRNA synthetases class I (I, L, M and V) IF561_15620 PF10458 Valyl tRNA synthetase tRNA binding arm IF561_15625 PF04364 DNA polymerase III chi subunit, HolC IF561_15630 PF00883 Cytosol aminopeptidase family, catalytic domain IF561_15630 PF02789 Cytosol aminopeptidase family, N-terminal domain IF561_15635 PF03739 Lipopolysaccharide export system permease LptF/LptG IF561_15640 PF03739 Lipopolysaccharide export system permease LptF/LptG IF561_15650 PF10011 Predicted membrane protein (DUF2254) IF561_15655 PF00106 short chain dehydrogenase IF561_15665 PF01522 Polysaccharide deacetylase IF561_15670 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit IF561_15675 PF02378 Phosphotransferase system, EIIC IF561_15680 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit IF561_15685 PF02056 Family 4 glycosyl hydrolase IF561_15685 PF11975 Family 4 glycosyl hydrolase C-terminal domain IF561_15690 PF04794 YdjC-like protein IF561_15695 PF00356 Bacterial regulatory proteins, lacI family IF561_15695 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family IF561_15700 PF00072 Response regulator receiver domain IF561_15745 PF00171 Aldehyde dehydrogenase family IF561_15775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IF561_15775 PF17200 Single Cache domain 2 IF561_15775 PF00672 HAMP domain IF561_15815 PF01464 Transglycosylase SLT domain IF561_15815 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain IF561_15820 PF04362 Bacterial Fe(2+) trafficking IF561_15825 PF00633 Helix-hairpin-helix motif IF561_15825 PF00730 HhH-GPD superfamily base excision DNA repair protein IF561_15825 PF14815 NUDIX domain IF561_15830 PF02390 Putative methyltransferase IF561_15835 PF02086 D12 class N6 adenine-specific DNA methyltransferase IF561_15840 PF04960 Glutaminase IF561_15845 PF06969 HemN C-terminal domain IF561_15845 PF04055 Radical SAM superfamily IF561_15850 PF01725 Ham1 family IF561_15860 PF02594 Uncharacterised ACR, YggU family COG1872 IF561_15865 PF02325 YGGT family IF561_15870 PF03807 NADP oxidoreductase coenzyme F420-dependent IF561_15870 PF14748 Pyrroline-5-carboxylate reductase dimerisation IF561_15875 PF01168 Alanine racemase, N-terminal domain IF561_15880 PF00437 Type II/IV secretion system protein IF561_15885 PF00437 Type II/IV secretion system protein IF561_15890 PF03652 Holliday junction resolvase IF561_15895 PF02622 Uncharacterized ACR, COG1678 IF561_15900 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain IF561_15900 PF02951 Prokaryotic glutathione synthetase, N-terminal domain IF561_15905 PF04452 RNA methyltransferase IF561_15910 PF04231 Endonuclease I IF561_15915 PF10263 SprT-like family IF561_15915 PF17283 SprT-like zinc ribbon domain IF561_15925 PF00438 S-adenosylmethionine synthetase, N-terminal domain IF561_15925 PF02773 S-adenosylmethionine synthetase, C-terminal domain IF561_15925 PF02772 S-adenosylmethionine synthetase, central domain IF561_15930 PF02779 Transketolase, pyrimidine binding domain IF561_15930 PF02780 Transketolase, C-terminal domain IF561_15930 PF00456 Transketolase, thiamine diphosphate binding domain IF561_15935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_15935 PF03466 LysR substrate binding domain IF561_15940 PF07715 TonB-dependent Receptor Plug Domain IF561_15940 PF00593 TonB dependent receptor IF561_15945 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IF561_15945 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IF561_15950 PF00162 Phosphoglycerate kinase IF561_15955 PF01116 Fructose-bisphosphate aldolase class-II IF561_15960 PF00924 Mechanosensitive ion channel IF561_15960 PF05552 Conserved TM helix IF561_15965 PF04073 Aminoacyl-tRNA editing domain IF561_15970 PF01810 LysE type translocator IF561_15975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_15975 PF03466 LysR substrate binding domain IF561_15980 PF04402 Protein of unknown function (DUF541) IF561_15985 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IF561_15985 PF01842 ACT domain IF561_15985 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IF561_15990 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) IF561_15995 PF01812 5-formyltetrahydrofolate cyclo-ligase family IF561_16005 PF05164 Cell division protein ZapA IF561_16010 PF03695 Uncharacterised protein family (UPF0149) IF561_16015 PF01494 FAD binding domain IF561_16020 PF01494 FAD binding domain IF561_16035 PF01571 Aminomethyltransferase folate-binding domain IF561_16040 PF03937 Flavinator of succinate dehydrogenase IF561_16050 PF02910 Fumarate reductase flavoprotein C-term IF561_16050 PF00890 FAD binding domain IF561_16055 PF04542 Sigma-70 region 2 IF561_16055 PF08281 Sigma-70, region 4 IF561_16060 PF03873 Anti sigma-E protein RseA, C-terminal domain IF561_16060 PF03872 Anti sigma-E protein RseA, N-terminal domain IF561_16065 PF03888 MucB/RseB N-terminal domain IF561_16065 PF17188 MucB/RseB C-terminal domain IF561_16075 PF06421 GTP-binding protein LepA C-terminus IF561_16075 PF00009 Elongation factor Tu GTP binding domain IF561_16075 PF03144 Elongation factor Tu domain 2 IF561_16075 PF00679 Elongation factor G C-terminus IF561_16080 PF10502 Signal peptidase, peptidase S26 IF561_16085 PF00035 Double-stranded RNA binding motif IF561_16085 PF14622 Ribonuclease-III-like IF561_16090 PF01926 50S ribosome-binding GTPase IF561_16090 PF07650 KH domain IF561_16095 PF11967 Recombination protein O N terminal IF561_16095 PF02565 Recombination protein O C terminal IF561_16100 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ IF561_16105 PF01648 4'-phosphopantetheinyl transferase superfamily IF561_16110 PF00672 HAMP domain IF561_16110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_16110 PF00512 His Kinase A (phospho-acceptor) domain IF561_16110 PF01627 Hpt domain IF561_16110 PF00072 Response regulator receiver domain IF561_16110 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IF561_16115 PF01938 TRAM domain IF561_16115 PF05958 tRNA (Uracil-5-)-methyltransferase IF561_16120 PF02824 TGS domain IF561_16120 PF04607 Region found in RelA / SpoT proteins IF561_16120 PF13291 ACT domain IF561_16125 PF03819 MazG nucleotide pyrophosphohydrolase domain IF561_16130 PF06418 CTP synthase N-terminus IF561_16130 PF00117 Glutamine amidotransferase class-I IF561_16135 PF00113 Enolase, C-terminal TIM barrel domain IF561_16135 PF03952 Enolase, N-terminal domain IF561_16140 PF04977 Septum formation initiator IF561_16145 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase IF561_16150 PF02542 YgbB family IF561_16155 PF01142 tRNA pseudouridine synthase D (TruD) IF561_16160 PF01975 Survival protein SurE IF561_16170 PF01476 LysM domain IF561_16170 PF01551 Peptidase family M23 IF561_16175 PF00140 Sigma-70 factor, region 1.2 IF561_16175 PF04542 Sigma-70 region 2 IF561_16175 PF04539 Sigma-70 region 3 IF561_16175 PF04545 Sigma-70, region 4 IF561_16180 PF05190 MutS family domain IV IF561_16180 PF00488 MutS domain V IF561_16180 PF05188 MutS domain II IF561_16180 PF01624 MutS domain I IF561_16180 PF05192 MutS domain III IF561_16185 PF02464 Competence-damaged protein IF561_16235 PF04013 Putative SAM-dependent RNA methyltransferase IF561_16240 PF01523 Putative modulator of DNA gyrase IF561_16245 PF01523 Putative modulator of DNA gyrase IF561_16250 PF08543 Phosphomethylpyrimidine kinase IF561_16255 PF00005 ABC transporter IF561_16260 PF00528 Binding-protein-dependent transport system inner membrane component IF561_16265 PF09084 NMT1/THI5 like IF561_16270 PF03070 TENA/THI-4/PQQC family IF561_16275 PF02110 Hydroxyethylthiazole kinase family IF561_16280 PF02581 Thiamine monophosphate synthase IF561_16290 PF18364 Molybdopterin oxidoreductase N-terminal domain IF561_16290 PF01568 Molydopterin dinucleotide binding domain IF561_16290 PF00384 Molybdopterin oxidoreductase IF561_16295 PF03264 NapC/NirT cytochrome c family, N-terminal region IF561_16320 PF00583 Acetyltransferase (GNAT) family IF561_16340 PF00155 Aminotransferase class I and II IF561_16340 PF00392 Bacterial regulatory proteins, gntR family IF561_16345 PF02595 Glycerate kinase family IF561_16350 PF02447 GntP family permease IF561_16355 PF13556 PucR C-terminal helix-turn-helix domain IF561_16355 PF17853 GGDEF-like domain IF561_16355 PF05651 Putative sugar diacid recognition IF561_16380 PF13419 Haloacid dehalogenase-like hydrolase IF561_16395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_16395 PF03466 LysR substrate binding domain IF561_16405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_16405 PF03466 LysR substrate binding domain IF561_16410 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IF561_16415 PF01661 Macro domain IF561_16420 PF01204 Trehalase IF561_16430 PF12706 Beta-lactamase superfamily domain IF561_16440 PF07690 Major Facilitator Superfamily IF561_16445 PF13533 Biotin-lipoyl like IF561_16450 PF03922 OmpW family IF561_16455 PF13599 Pentapeptide repeats (9 copies) IF561_16470 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading IF561_16470 PF18416 N-acetylglucosamine binding protein domain 2 IF561_16475 PF01037 Lrp/AsnC ligand binding domain IF561_16480 PF01810 LysE type translocator IF561_16485 PF08021 Siderophore-interacting FAD-binding domain IF561_16485 PF04954 Siderophore-interacting protein IF561_16490 PF14583 Oligogalacturonate lyase IF561_16495 PF00474 Sodium:solute symporter family IF561_16500 PF13229 Right handed beta helix region IF561_16515 PF01081 KDPG and KHG aldolase IF561_16520 PF00294 pfkB family carbohydrate kinase IF561_16535 PF07883 Cupin domain IF561_16540 PF10688 Bacterial inner membrane protein IF561_16550 PF09339 IclR helix-turn-helix domain IF561_16550 PF01614 Bacterial transcriptional regulator IF561_16565 PF03466 LysR substrate binding domain IF561_16565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_16570 PF00797 N-acetyltransferase IF561_16575 PF08240 Alcohol dehydrogenase GroES-like domain IF561_16575 PF00107 Zinc-binding dehydrogenase IF561_16580 PF00756 Putative esterase IF561_16590 PF17152 Periplasmic sensor domain IF561_16590 PF00990 Diguanylate cyclase, GGDEF domain IF561_16605 PF03466 LysR substrate binding domain IF561_16605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_16620 PF00849 RNA pseudouridylate synthase IF561_16625 PF01554 MatE IF561_16630 PF00563 EAL domain IF561_16630 PF00990 Diguanylate cyclase, GGDEF domain IF561_16640 PF06865 Pyrimidine/purine nucleoside phosphorylase IF561_16650 PF08329 Chitinase A, N-terminal domain IF561_16650 PF00704 Glycosyl hydrolases family 18 IF561_16670 PF03600 Citrate transporter IF561_16680 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 IF561_16690 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain IF561_16690 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain IF561_16695 PF06029 AlkA N-terminal domain IF561_16695 PF00730 HhH-GPD superfamily base excision DNA repair protein IF561_16705 PF07681 DoxX IF561_16710 PF17954 Quercetinase C-terminal cupin domain IF561_16710 PF02678 Pirin IF561_16715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_16715 PF03466 LysR substrate binding domain IF561_16730 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase IF561_16740 PF03616 Sodium/glutamate symporter IF561_16745 PF00155 Aminotransferase class I and II IF561_16745 PF00392 Bacterial regulatory proteins, gntR family IF561_16750 PF00005 ABC transporter IF561_16760 PF03616 Sodium/glutamate symporter IF561_16765 PF00132 Bacterial transferase hexapeptide (six repeats) IF561_16780 PF00672 HAMP domain IF561_16780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IF561_16780 PF17200 Single Cache domain 2 IF561_16785 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD IF561_16795 PF00072 Response regulator receiver domain IF561_16795 PF04397 LytTr DNA-binding domain IF561_16800 PF13492 GAF domain IF561_16800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_16800 PF06580 Histidine kinase IF561_16800 PF07694 5TMR of 5TMR-LYT IF561_16820 PF00005 ABC transporter IF561_16830 PF01098 Cell cycle protein IF561_16835 PF01709 Transcriptional regulator IF561_16845 PF01627 Hpt domain IF561_16845 PF00072 Response regulator receiver domain IF561_16845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_16845 PF17149 Periplasmic sensor domain found in signal transduction proteins IF561_16845 PF00512 His Kinase A (phospho-acceptor) domain IF561_16845 PF00672 HAMP domain IF561_16855 PF00925 GTP cyclohydrolase II IF561_16855 PF08719 Domain of unknown function (DUF1768) IF561_16865 PF00005 ABC transporter IF561_16865 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IF561_16870 PF00005 ABC transporter IF561_16870 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IF561_16885 PF13614 AAA domain IF561_16885 PF18607 ParA helix turn helix domain IF561_16890 PF08775 ParB family IF561_16890 PF02195 ParB-like nuclease domain IF561_16895 PF05127 Helicase IF561_16895 PF13718 GNAT acetyltransferase 2 IF561_16905 PF00132 Bacterial transferase hexapeptide (six repeats) IF561_16910 PF03466 LysR substrate binding domain IF561_16910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_16915 PF03575 Peptidase family S51 IF561_16920 PF00267 Gram-negative porin IF561_16925 PF00367 phosphotransferase system, EIIB IF561_16925 PF02378 Phosphotransferase system, EIIC IF561_16930 PF01380 SIS domain IF561_16935 PF01380 SIS domain IF561_16935 PF01418 Helix-turn-helix domain, rpiR family IF561_16940 PF00246 Zinc carboxypeptidase IF561_16945 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IF561_16950 PF03358 NADPH-dependent FMN reductase IF561_16960 PF03412 Peptidase C39 family IF561_16960 PF00005 ABC transporter IF561_16960 PF00664 ABC transporter transmembrane region IF561_16975 PF00529 HlyD membrane-fusion protein of T1SS IF561_16980 PF00072 Response regulator receiver domain IF561_16980 PF02954 Bacterial regulatory protein, Fis family IF561_16980 PF00158 Sigma-54 interaction domain IF561_16985 PF00512 His Kinase A (phospho-acceptor) domain IF561_16985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_16985 PF02743 Cache domain IF561_16990 PF01243 Pyridoxamine 5'-phosphate oxidase IF561_16990 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region IF561_17000 PF12833 Helix-turn-helix domain IF561_17005 PF14850 DNA-binding domain of Proline dehydrogenase IF561_17005 PF00171 Aldehyde dehydrogenase family IF561_17005 PF18327 Proline utilization A proline dehydrogenase N-terminal domain IF561_17005 PF01619 Proline dehydrogenase IF561_17015 PF00474 Sodium:solute symporter family IF561_17050 PF01037 Lrp/AsnC ligand binding domain IF561_17060 PF00005 ABC transporter IF561_17060 PF00664 ABC transporter transmembrane region IF561_17070 PF12833 Helix-turn-helix domain IF561_17070 PF06719 AraC-type transcriptional regulator N-terminus IF561_17085 PF00271 Helicase conserved C-terminal domain IF561_17085 PF00270 DEAD/DEAH box helicase IF561_17090 PF03475 3-alpha domain IF561_17090 PF03473 MOSC domain IF561_17105 PF11975 Family 4 glycosyl hydrolase C-terminal domain IF561_17105 PF02056 Family 4 glycosyl hydrolase IF561_17110 PF03466 LysR substrate binding domain IF561_17110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_17115 PF02743 Cache domain IF561_17115 PF00672 HAMP domain IF561_17115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IF561_17125 PF04542 Sigma-70 region 2 IF561_17125 PF08281 Sigma-70, region 4 IF561_17130 PF01965 DJ-1/PfpI family IF561_17130 PF12833 Helix-turn-helix domain IF561_17135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_17135 PF03466 LysR substrate binding domain IF561_17150 PF07992 Pyridine nucleotide-disulphide oxidoreductase IF561_17150 PF13192 Thioredoxin domain IF561_17155 PF10417 C-terminal domain of 1-Cys peroxiredoxin IF561_17155 PF00578 AhpC/TSA family IF561_17160 PF01047 MarR family IF561_17165 PF02566 OsmC-like protein IF561_17185 PF00535 Glycosyl transferase family 2 IF561_17195 PF08241 Methyltransferase domain IF561_17205 PF01136 Peptidase family U32 IF561_17215 PF00367 phosphotransferase system, EIIB IF561_17215 PF02378 Phosphotransferase system, EIIC IF561_17220 PF00072 Response regulator receiver domain IF561_17220 PF00486 Transcriptional regulatory protein, C terminal IF561_17225 PF00512 His Kinase A (phospho-acceptor) domain IF561_17225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_17225 PF08521 Two-component sensor kinase N-terminal IF561_17230 PF01547 Bacterial extracellular solute-binding protein IF561_17235 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain IF561_17235 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain IF561_17240 PF06276 Ferric iron reductase FhuF-like transporter IF561_17240 PF04183 IucA / IucC family IF561_17250 PF06276 Ferric iron reductase FhuF-like transporter IF561_17250 PF04183 IucA / IucC family IF561_17255 PF02655 ATP-grasp domain IF561_17255 PF00206 Lyase IF561_17260 PF00593 TonB dependent receptor IF561_17260 PF07715 TonB-dependent Receptor Plug Domain IF561_17265 PF00593 TonB dependent receptor IF561_17265 PF07660 Secretin and TonB N terminus short domain IF561_17265 PF07715 TonB-dependent Receptor Plug Domain IF561_17270 PF01497 Periplasmic binding protein IF561_17275 PF01032 FecCD transport family IF561_17280 PF01032 FecCD transport family IF561_17285 PF00005 ABC transporter IF561_17290 PF17200 Single Cache domain 2 IF561_17290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IF561_17290 PF00672 HAMP domain IF561_17295 PF00675 Insulinase (Peptidase family M16) IF561_17295 PF05193 Peptidase M16 inactive domain IF561_17305 PF01551 Peptidase family M23 IF561_17305 PF04225 Opacity-associated protein A LysM-like domain IF561_17315 PF07690 Major Facilitator Superfamily IF561_17325 PF00128 Alpha amylase, catalytic domain IF561_17325 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) IF561_17330 PF02264 LamB porin IF561_17345 PF00128 Alpha amylase, catalytic domain IF561_17345 PF02903 Alpha amylase, N-terminal ig-like domain IF561_17345 PF16657 Maltogenic Amylase, C-terminal domain IF561_17350 PF04231 Endonuclease I IF561_17355 PF18494 Pullulanase Ins domain IF561_17355 PF17967 Pullulanase N2 domain IF561_17355 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) IF561_17355 PF11852 Domain of unknown function (DUF3372) IF561_17355 PF03714 Bacterial pullanase-associated domain IF561_17370 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain IF561_17370 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain IF561_17370 PF01276 Orn/Lys/Arg decarboxylase, major domain IF561_17375 PF13520 Amino acid permease IF561_17385 PF08543 Phosphomethylpyrimidine kinase IF561_17395 PF00375 Sodium:dicarboxylate symporter family IF561_17400 PF03193 RsgA GTPase IF561_17405 PF02378 Phosphotransferase system, EIIC IF561_17405 PF00367 phosphotransferase system, EIIB IF561_17415 PF02630 SCO1/SenC IF561_17430 PF17874 MalT-like TPR region IF561_17430 PF00196 Bacterial regulatory proteins, luxR family IF561_17435 PF00343 Carbohydrate phosphorylase IF561_17440 PF02446 4-alpha-glucanotransferase IF561_17445 PF00128 Alpha amylase, catalytic domain IF561_17445 PF02806 Alpha amylase, C-terminal all-beta domain IF561_17445 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) IF561_17450 PF00912 Transglycosylase IF561_17455 PF00128 Alpha amylase, catalytic domain IF561_17470 PF07670 Nucleoside recognition IF561_17475 PF07670 Nucleoside recognition IF561_17480 PF01546 Peptidase family M20/M25/M40 IF561_17480 PF07687 Peptidase dimerisation domain IF561_17485 PF06803 Protein of unknown function (DUF1232) IF561_17490 PF00375 Sodium:dicarboxylate symporter family IF561_17500 PF03466 LysR substrate binding domain IF561_17500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_17505 PF08803 Putative mono-oxygenase ydhR IF561_17515 PF13614 AAA domain IF561_17515 PF13807 G-rich domain on putative tyrosine kinase IF561_17515 PF02706 Chain length determinant protein IF561_17520 PF01451 Low molecular weight phosphotyrosine protein phosphatase IF561_17525 PF02563 Polysaccharide biosynthesis/export protein IF561_17525 PF10531 SLBB domain IF561_17525 PF18412 Outer-membrane lipoprotein Wza C-terminal domain IF561_17530 PF00881 Nitroreductase family IF561_17535 PF01914 MarC family integral membrane protein IF561_17540 PF01734 Patatin-like phospholipase IF561_17545 PF18416 N-acetylglucosamine binding protein domain 2 IF561_17545 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading IF561_17550 PF17773 UPF0176 acylphosphatase like domain IF561_17550 PF00581 Rhodanese-like domain IF561_17555 PF13673 Acetyltransferase (GNAT) domain IF561_17560 PF00561 alpha/beta hydrolase fold IF561_17565 PF00768 D-alanyl-D-alanine carboxypeptidase IF561_17565 PF07943 Penicillin-binding protein 5, C-terminal domain IF561_17570 PF00686 Starch binding domain IF561_17570 PF00128 Alpha amylase, catalytic domain IF561_17575 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term IF561_17575 PF12833 Helix-turn-helix domain IF561_17580 PF00881 Nitroreductase family IF561_17590 PF03466 LysR substrate binding domain IF561_17590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_17595 PF09905 DNA-binding protein VF530 IF561_17605 PF00970 Oxidoreductase FAD-binding domain IF561_17605 PF00175 Oxidoreductase NAD-binding domain IF561_17615 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) IF561_17620 PF01594 AI-2E family transporter IF561_17630 PF13533 Biotin-lipoyl like IF561_17650 PF00892 EamA-like transporter family IF561_17655 PF03466 LysR substrate binding domain IF561_17655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_17675 PF00583 Acetyltransferase (GNAT) family IF561_17685 PF00923 Transaldolase/Fructose-6-phosphate aldolase IF561_17690 PF04055 Radical SAM superfamily IF561_17695 PF02901 Pyruvate formate lyase-like IF561_17695 PF01228 Glycine radical IF561_17715 PF08000 Bacterial PH domain IF561_17725 PF00691 OmpA family IF561_17725 PF13677 Membrane MotB of proton-channel complex MotA/MotB IF561_17730 PF01618 MotA/TolQ/ExbB proton channel family IF561_17735 PF04542 Sigma-70 region 2 IF561_17735 PF04545 Sigma-70, region 4 IF561_17740 PF03748 Flagellar basal body-associated protein FliL IF561_17755 PF02561 Flagellar protein FliS IF561_17760 PF07196 Flagellin hook IN motif IF561_17760 PF07195 Flagellar hook-associated protein 2 C-terminus IF561_17760 PF02465 Flagellar hook-associated protein 2 N-terminus IF561_17770 PF00669 Bacterial flagellin N-terminal helical region IF561_17770 PF00700 Bacterial flagellin C-terminal helical region IF561_17780 PF00771 FHIPEP family IF561_17785 PF01312 FlhB HrpN YscU SpaS Family IF561_17790 PF01311 Bacterial export proteins, family 1 IF561_17795 PF01313 Bacterial export proteins, family 3 IF561_17800 PF00813 FliP family IF561_17805 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term IF561_17820 PF00158 Sigma-54 interaction domain IF561_17820 PF00072 Response regulator receiver domain IF561_17820 PF02954 Bacterial regulatory protein, Fis family IF561_17825 PF02049 Flagellar hook-basal body complex protein FliE IF561_17830 PF08345 Flagellar M-ring protein C-terminal IF561_17830 PF01514 Secretory protein of YscJ/FliF family IF561_17835 PF14841 FliG middle domain IF561_17835 PF14842 FliG N-terminal domain IF561_17835 PF01706 FliG C-terminal domain IF561_17845 PF18269 T3SS EscN ATPase C-terminal domain IF561_17845 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IF561_17860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_17860 PF03466 LysR substrate binding domain IF561_17895 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IF561_17900 PF03466 LysR substrate binding domain IF561_17900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_17920 PF00486 Transcriptional regulatory protein, C terminal IF561_17920 PF00072 Response regulator receiver domain IF561_17925 PF13426 PAS domain IF561_17925 PF08448 PAS fold IF561_17925 PF00512 His Kinase A (phospho-acceptor) domain IF561_17925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_17925 PF00072 Response regulator receiver domain IF561_17930 PF00080 Copper/zinc superoxide dismutase (SODC) IF561_17935 PF00266 Aminotransferase class-V IF561_17940 PF00497 Bacterial extracellular solute-binding proteins, family 3 IF561_17945 PF00563 EAL domain IF561_17945 PF03707 Bacterial signalling protein N terminal repeat IF561_17945 PF00990 Diguanylate cyclase, GGDEF domain IF561_17950 PF00155 Aminotransferase class I and II IF561_17955 PF08240 Alcohol dehydrogenase GroES-like domain IF561_17955 PF00107 Zinc-binding dehydrogenase IF561_17985 PF00194 Eukaryotic-type carbonic anhydrase IF561_17990 PF00924 Mechanosensitive ion channel IF561_18000 PF01070 FMN-dependent dehydrogenase IF561_18005 PF02652 L-lactate permease IF561_18010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_18010 PF03466 LysR substrate binding domain IF561_18015 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain IF561_18015 PF00326 Prolyl oligopeptidase family IF561_18020 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IF561_18020 PF00005 ABC transporter IF561_18030 PF13654 AAA domain IF561_18030 PF05362 Lon protease (S16) C-terminal proteolytic domain IF561_18035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IF561_18035 PF00672 HAMP domain IF561_18040 PF12945 Flagellar protein YcgR IF561_18040 PF07238 PilZ domain IF561_18055 PF00583 Acetyltransferase (GNAT) family IF561_18060 PF12838 4Fe-4S dicluster domain IF561_18060 PF12800 4Fe-4S binding domain IF561_18065 PF12801 4Fe-4S binding domain IF561_18065 PF13237 4Fe-4S dicluster domain IF561_18080 PF12558 ATP-binding cassette cobalt transporter IF561_18080 PF00005 ABC transporter IF561_18085 PF07155 ECF-type riboflavin transporter, S component IF561_18090 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IF561_18090 PF00529 HlyD membrane-fusion protein of T1SS IF561_18095 PF11742 Protein of unknown function (DUF3302) IF561_18100 PF00990 Diguanylate cyclase, GGDEF domain IF561_18115 PF01048 Phosphorylase superfamily IF561_18120 PF08349 Protein of unknown function (DUF1722) IF561_18125 PF13411 MerR HTH family regulatory protein IF561_18130 PF00875 DNA photolyase IF561_18130 PF03441 FAD binding domain of DNA photolyase IF561_18135 PF17969 L,D-transpeptidase C-terminal domain IF561_18135 PF01476 LysM domain IF561_18135 PF03734 L,D-transpeptidase catalytic domain IF561_18145 PF00271 Helicase conserved C-terminal domain IF561_18145 PF00270 DEAD/DEAH box helicase IF561_18150 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain IF561_18150 PF00326 Prolyl oligopeptidase family IF561_18155 PF07715 TonB-dependent Receptor Plug Domain IF561_18155 PF00593 TonB dependent receptor IF561_18175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IF561_18175 PF00672 HAMP domain IF561_18180 PF12849 PBP superfamily domain IF561_18185 PF00528 Binding-protein-dependent transport system inner membrane component IF561_18190 PF00528 Binding-protein-dependent transport system inner membrane component IF561_18195 PF00005 ABC transporter IF561_18215 PF13519 von Willebrand factor type A domain IF561_18220 PF13519 von Willebrand factor type A domain IF561_18230 PF01882 Protein of unknown function DUF58 IF561_18235 PF07726 ATPase family associated with various cellular activities (AAA) IF561_18235 PF17863 AAA lid domain IF561_18240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IF561_18240 PF02743 Cache domain IF561_18240 PF00672 HAMP domain IF561_18250 PF00196 Bacterial regulatory proteins, luxR family IF561_18255 PF00196 Bacterial regulatory proteins, luxR family IF561_18265 PF00664 ABC transporter transmembrane region IF561_18265 PF00005 ABC transporter IF561_18270 PF00529 HlyD membrane-fusion protein of T1SS IF561_18285 PF00691 OmpA family IF561_18285 PF01389 OmpA-like transmembrane domain IF561_18295 PF01032 FecCD transport family IF561_18300 PF01497 Periplasmic binding protein IF561_18305 PF00005 ABC transporter IF561_18310 PF07715 TonB-dependent Receptor Plug Domain IF561_18310 PF00593 TonB dependent receptor IF561_18315 PF00664 ABC transporter transmembrane region IF561_18315 PF00005 ABC transporter IF561_18320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_18320 PF02702 Osmosensitive K+ channel His kinase sensor domain IF561_18320 PF00512 His Kinase A (phospho-acceptor) domain IF561_18320 PF13493 Domain of unknown function (DUF4118) IF561_18320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_18320 PF02702 Osmosensitive K+ channel His kinase sensor domain IF561_18320 PF13493 Domain of unknown function (DUF4118) IF561_18320 PF00512 His Kinase A (phospho-acceptor) domain IF561_18325 PF00072 Response regulator receiver domain IF561_18325 PF00486 Transcriptional regulatory protein, C terminal IF561_18330 PF02080 TrkA-C domain IF561_18330 PF02254 TrkA-N domain IF561_18335 PF02386 Cation transport protein IF561_18340 PF00990 Diguanylate cyclase, GGDEF domain IF561_18340 PF00563 EAL domain IF561_18340 PF03707 Bacterial signalling protein N terminal repeat IF561_18345 PF00127 Copper binding proteins, plastocyanin/azurin family IF561_18350 PF13419 Haloacid dehalogenase-like hydrolase IF561_18360 PF01238 Phosphomannose isomerase type I IF561_18365 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IF561_18365 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit IF561_18370 PF12833 Helix-turn-helix domain IF561_18380 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit IF561_18390 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IF561_18390 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IF561_18395 PF06628 Catalase-related immune-responsive IF561_18395 PF00199 Catalase IF561_18400 PF13417 Glutathione S-transferase, N-terminal domain IF561_18405 PF16884 N-terminal domain of oxidoreductase IF561_18405 PF00107 Zinc-binding dehydrogenase IF561_18410 PF16925 Tetracyclin repressor-like, C-terminal domain IF561_18410 PF00440 Bacterial regulatory proteins, tetR family IF561_18415 PF04266 ASCH domain IF561_18445 PF00534 Glycosyl transferases group 1 IF561_18445 PF13439 Glycosyltransferase Family 4 IF561_18455 PF02706 Chain length determinant protein IF561_18455 PF13807 G-rich domain on putative tyrosine kinase IF561_18455 PF13614 AAA domain IF561_18470 PF02397 Bacterial sugar transferase IF561_18475 PF00005 ABC transporter IF561_18475 PF08402 TOBE domain IF561_18480 PF01547 Bacterial extracellular solute-binding protein IF561_18485 PF14785 Maltose transport system permease protein MalF P2 domain IF561_18485 PF00528 Binding-protein-dependent transport system inner membrane component IF561_18490 PF00528 Binding-protein-dependent transport system inner membrane component IF561_18545 PF01872 RibD C-terminal domain IF561_18550 PF02909 Tetracyclin repressor-like, C-terminal domain IF561_18550 PF00440 Bacterial regulatory proteins, tetR family IF561_18555 PF02798 Glutathione S-transferase, N-terminal domain IF561_18560 PF07943 Penicillin-binding protein 5, C-terminal domain IF561_18560 PF00768 D-alanyl-D-alanine carboxypeptidase IF561_18570 PF00462 Glutaredoxin IF561_18570 PF08534 Redoxin IF561_18575 PF00962 Adenosine/AMP deaminase IF561_18590 PF00313 'Cold-shock' DNA-binding domain IF561_18595 PF02678 Pirin IF561_18595 PF05726 Pirin C-terminal cupin domain IF561_18600 PF01734 Patatin-like phospholipase IF561_18610 PF01047 MarR family IF561_18635 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IF561_18640 PF08019 Phosphoethanolamine transferase EptA/EptB IF561_18640 PF00884 Sulfatase IF561_18645 PF01219 Prokaryotic diacylglycerol kinase IF561_18655 PF00672 HAMP domain IF561_18655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_18655 PF00512 His Kinase A (phospho-acceptor) domain IF561_18660 PF00072 Response regulator receiver domain IF561_18660 PF00486 Transcriptional regulatory protein, C terminal IF561_18665 PF00106 short chain dehydrogenase IF561_18680 PF01323 DSBA-like thioredoxin domain IF561_18695 PF00255 Glutathione peroxidase IF561_18700 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase IF561_18710 PF07690 Major Facilitator Superfamily IF561_18720 PF01966 HD domain IF561_18730 PF07969 Amidohydrolase family IF561_18735 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin IF561_18740 PF01769 Divalent cation transporter IF561_18740 PF03448 MgtE intracellular N domain IF561_18740 PF00571 CBS domain IF561_18745 PF03109 ABC1 family IF561_18755 PF00392 Bacterial regulatory proteins, gntR family IF561_18755 PF00155 Aminotransferase class I and II IF561_18760 PF13520 Amino acid permease IF561_18765 PF01037 Lrp/AsnC ligand binding domain IF561_18765 PF13404 AsnC-type helix-turn-helix domain IF561_18770 PF03466 LysR substrate binding domain IF561_18770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_18785 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IF561_18785 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IF561_18790 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IF561_18790 PF01627 Hpt domain IF561_18790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_18790 PF00672 HAMP domain IF561_18790 PF00072 Response regulator receiver domain IF561_18790 PF00512 His Kinase A (phospho-acceptor) domain IF561_18795 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IF561_18800 PF01554 MatE IF561_18805 PF04363 Protein of unknown function (DUF496) IF561_18815 PF04337 Protein of unknown function, DUF480 IF561_18820 PF01541 GIY-YIG catalytic domain IF561_18825 PF13407 Periplasmic binding protein domain IF561_18830 PF00072 Response regulator receiver domain IF561_18830 PF00512 His Kinase A (phospho-acceptor) domain IF561_18830 PF09308 LuxQ, periplasmic IF561_18830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_18840 PF00529 HlyD membrane-fusion protein of T1SS IF561_18840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IF561_18860 PF01037 Lrp/AsnC ligand binding domain IF561_18885 PF02355 Protein export membrane protein IF561_18885 PF13721 SecD export protein N-terminal TM region IF561_18885 PF07549 SecD/SecF GG Motif IF561_18890 PF02355 Protein export membrane protein IF561_18890 PF07549 SecD/SecF GG Motif IF561_18900 PF01810 LysE type translocator IF561_18905 PF00106 short chain dehydrogenase IF561_18910 PF00108 Thiolase, N-terminal domain IF561_18910 PF02803 Thiolase, C-terminal domain IF561_18920 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus IF561_18930 PF03264 NapC/NirT cytochrome c family, N-terminal region IF561_18935 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) IF561_18940 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IF561_18940 PF00384 Molybdopterin oxidoreductase IF561_18940 PF01568 Molydopterin dinucleotide binding domain IF561_18950 PF13187 4Fe-4S dicluster domain IF561_18950 PF12838 4Fe-4S dicluster domain IF561_18955 PF00672 HAMP domain IF561_18955 PF07730 Histidine kinase IF561_18955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_18955 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term IF561_18960 PF00196 Bacterial regulatory proteins, luxR family IF561_18960 PF00072 Response regulator receiver domain IF561_18975 PF01546 Peptidase family M20/M25/M40 IF561_18975 PF07687 Peptidase dimerisation domain IF561_18980 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region IF561_18985 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IF561_18990 PF00873 AcrB/AcrD/AcrF family IF561_18995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IF561_18995 PF00672 HAMP domain IF561_18995 PF12729 Four helix bundle sensory module for signal transduction IF561_19000 PF00472 RF-1 domain IF561_19005 PF13419 Haloacid dehalogenase-like hydrolase IF561_19010 PF01389 OmpA-like transmembrane domain IF561_19010 PF00691 OmpA family IF561_19015 PF00793 DAHP synthetase I family IF561_19020 PF07690 Major Facilitator Superfamily IF561_19025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IF561_19025 PF08447 PAS fold IF561_19030 PF00456 Transketolase, thiamine diphosphate binding domain IF561_19030 PF02780 Transketolase, C-terminal domain IF561_19030 PF02779 Transketolase, pyrimidine binding domain IF561_19035 PF00923 Transaldolase/Fructose-6-phosphate aldolase IF561_19045 PF08329 Chitinase A, N-terminal domain IF561_19045 PF00704 Glycosyl hydrolases family 18 IF561_19050 PF00563 EAL domain IF561_19050 PF00990 Diguanylate cyclase, GGDEF domain IF561_19050 PF03707 Bacterial signalling protein N terminal repeat IF561_19055 PF00581 Rhodanese-like domain IF561_19075 PF00899 ThiF family IF561_19080 PF00994 Probable molybdopterin binding domain IF561_19080 PF03454 MoeA C-terminal region (domain IV) IF561_19080 PF03453 MoeA N-terminal region (domain I and II) IF561_19085 PF01227 GTP cyclohydrolase I IF561_19090 PF01566 Natural resistance-associated macrophage protein IF561_19100 PF00654 Voltage gated chloride channel IF561_19115 PF00248 Aldo/keto reductase family IF561_19120 PF00072 Response regulator receiver domain IF561_19130 PF01256 Carbohydrate kinase IF561_19130 PF03853 YjeF-related protein N-terminus IF561_19135 PF00478 IMP dehydrogenase / GMP reductase domain IF561_19145 PF00665 Integrase core domain IF561_19145 PF09299 Mu transposase, C-terminal IF561_19175 PF13817 IS66 C-terminal element IF561_19175 PF13005 zinc-finger binding domain of transposase IS66 IF561_19175 PF03050 Transposase IS66 family IF561_19175 PF13007 Transposase C of IS166 homeodomain IF561_19190 PF04851 Type III restriction enzyme, res subunit IF561_19200 PF01381 Helix-turn-helix IF561_19225 PF00550 Phosphopantetheine attachment site IF561_19225 PF00109 Beta-ketoacyl synthase, N-terminal domain IF561_19225 PF16197 Ketoacyl-synthetase C-terminal extension IF561_19225 PF02801 Beta-ketoacyl synthase, C-terminal domain IF561_19225 PF00698 Acyl transferase domain IF561_19225 PF00668 Condensation domain IF561_19230 PF00501 AMP-binding enzyme IF561_19230 PF13193 AMP-binding enzyme C-terminal domain IF561_19230 PF00668 Condensation domain IF561_19230 PF07993 Male sterility protein IF561_19230 PF00550 Phosphopantetheine attachment site IF561_19240 PF00296 Luciferase-like monooxygenase IF561_19245 PF07690 Major Facilitator Superfamily IF561_19250 PF00550 Phosphopantetheine attachment site IF561_19250 PF00668 Condensation domain IF561_19250 PF13193 AMP-binding enzyme C-terminal domain IF561_19250 PF00501 AMP-binding enzyme IF561_19260 PF00975 Thioesterase domain IF561_19265 PF13673 Acetyltransferase (GNAT) domain IF561_19270 PF17837 4'-phosphopantetheinyl transferase N-terminal domain IF561_19270 PF01648 4'-phosphopantetheinyl transferase superfamily IF561_19275 PF00155 Aminotransferase class I and II IF561_19280 PF13193 AMP-binding enzyme C-terminal domain IF561_19280 PF00501 AMP-binding enzyme IF561_19285 PF01012 Electron transfer flavoprotein domain IF561_19285 PF00766 Electron transfer flavoprotein FAD-binding domain IF561_19290 PF01012 Electron transfer flavoprotein domain IF561_19300 PF00005 ABC transporter IF561_19300 PF12399 Branched-chain amino acid ATP-binding cassette transporter IF561_19325 PF00005 ABC transporter IF561_19330 PF00501 AMP-binding enzyme IF561_19330 PF14535 AMP-binding enzyme C-terminal domain IF561_19335 PF05724 Thiopurine S-methyltransferase (TPMT) IF561_19345 PF00034 Cytochrome c IF561_19355 PF13411 MerR HTH family regulatory protein IF561_19360 PF02627 Carboxymuconolactone decarboxylase family IF561_19365 PF02567 Phenazine biosynthesis-like protein IF561_19375 PF02322 Cytochrome bd terminal oxidase subunit II IF561_19380 PF01654 Cytochrome bd terminal oxidase subunit I IF561_19385 PF00392 Bacterial regulatory proteins, gntR family IF561_19385 PF00155 Aminotransferase class I and II IF561_19390 PF14602 Hexapeptide repeat of succinyl-transferase IF561_19390 PF12464 Maltose acetyltransferase IF561_19395 PF12795 Mechanosensitive ion channel porin domain IF561_19395 PF12794 Mechanosensitive ion channel inner membrane domain 1 IF561_19395 PF00924 Mechanosensitive ion channel IF561_19410 PF00672 HAMP domain IF561_19410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_19410 PF00512 His Kinase A (phospho-acceptor) domain IF561_19410 PF01627 Hpt domain IF561_19410 PF00072 Response regulator receiver domain IF561_19410 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IF561_19415 PF00682 HMGL-like IF561_19420 PF00289 Biotin carboxylase, N-terminal domain IF561_19420 PF02785 Biotin carboxylase C-terminal domain IF561_19420 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IF561_19420 PF00364 Biotin-requiring enzyme IF561_19425 PF00378 Enoyl-CoA hydratase/isomerase IF561_19430 PF01039 Carboxyl transferase domain IF561_19435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IF561_19435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IF561_19435 PF02770 Acyl-CoA dehydrogenase, middle domain IF561_19440 PF09278 MerR, DNA binding IF561_19440 PF00376 MerR family regulatory protein IF561_19445 PF02803 Thiolase, C-terminal domain IF561_19445 PF00108 Thiolase, N-terminal domain IF561_19450 PF00171 Aldehyde dehydrogenase family IF561_19455 PF02770 Acyl-CoA dehydrogenase, middle domain IF561_19455 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IF561_19455 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IF561_19460 PF00378 Enoyl-CoA hydratase/isomerase IF561_19470 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IF561_19470 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IF561_19480 PF17151 Periplasmic sensor domain IF561_19480 PF00990 Diguanylate cyclase, GGDEF domain IF561_19485 PF13977 BetI-type transcriptional repressor, C-terminal IF561_19485 PF00440 Bacterial regulatory proteins, tetR family IF561_19490 PF00171 Aldehyde dehydrogenase family IF561_19495 PF05199 GMC oxidoreductase IF561_19495 PF00732 GMC oxidoreductase IF561_19500 PF04069 Substrate binding domain of ABC-type glycine betaine transport system IF561_19505 PF00528 Binding-protein-dependent transport system inner membrane component IF561_19510 PF00005 ABC transporter IF561_19510 PF00571 CBS domain IF561_19515 PF00881 Nitroreductase family IF561_19525 PF01145 SPFH domain / Band 7 family IF561_19525 PF16200 C-terminal region of band_7 IF561_19535 PF00990 Diguanylate cyclase, GGDEF domain IF561_19535 PF03707 Bacterial signalling protein N terminal repeat IF561_19535 PF13188 PAS domain IF561_19535 PF00563 EAL domain IF561_19540 PF00034 Cytochrome c IF561_19540 PF03150 Di-haem cytochrome c peroxidase IF561_19545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_19545 PF00072 Response regulator receiver domain IF561_19545 PF09308 LuxQ, periplasmic IF561_19545 PF00512 His Kinase A (phospho-acceptor) domain IF561_19560 PF04116 Fatty acid hydroxylase superfamily IF561_19570 PF12167 Arm DNA-binding domain IF561_19570 PF00589 Phage integrase family IF561_19580 PF02223 Thymidylate kinase IF561_19655 PF01048 Phosphorylase superfamily IF561_19660 PF00990 Diguanylate cyclase, GGDEF domain IF561_19660 PF00563 EAL domain IF561_19665 PF05025 RbsD / FucU transport protein family IF561_19670 PF00005 ABC transporter IF561_19675 PF02653 Branched-chain amino acid transport system / permease component IF561_19680 PF13407 Periplasmic binding protein domain IF561_19685 PF00294 pfkB family carbohydrate kinase IF561_19690 PF00356 Bacterial regulatory proteins, lacI family IF561_19700 PF04973 Nicotinamide mononucleotide transporter IF561_19705 PF01048 Phosphorylase superfamily IF561_19720 PF00486 Transcriptional regulatory protein, C terminal IF561_19720 PF00072 Response regulator receiver domain IF561_19735 PF00245 Alkaline phosphatase IF561_19745 PF00082 Subtilase family IF561_19745 PF01483 Proprotein convertase P-domain IF561_19755 PF00990 Diguanylate cyclase, GGDEF domain IF561_19755 PF00072 Response regulator receiver domain IF561_19760 PF03222 Tryptophan/tyrosine permease family IF561_19770 PF01568 Molydopterin dinucleotide binding domain IF561_19770 PF00384 Molybdopterin oxidoreductase IF561_19770 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IF561_19775 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IF561_19775 PF10414 Sirohaem synthase dimerisation region IF561_19775 PF14824 Sirohaem biosynthesis protein central IF561_19780 PF00591 Glycosyl transferase family, a/b domain IF561_19780 PF02885 Glycosyl transferase family, helical bundle domain IF561_19785 PF01738 Dienelactone hydrolase family IF561_19790 PF08376 Nitrate and nitrite sensing IF561_19790 PF03861 ANTAR domain IF561_19800 PF00528 Binding-protein-dependent transport system inner membrane component IF561_19805 PF00005 ABC transporter IF561_19810 PF04324 BFD-like [2Fe-2S] binding domain IF561_19810 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IF561_19810 PF07992 Pyridine nucleotide-disulphide oxidoreductase IF561_19810 PF13806 Rieske-like [2Fe-2S] domain IF561_19810 PF18267 Rubredoxin NAD+ reductase C-terminal domain IF561_19810 PF01077 Nitrite and sulphite reductase 4Fe-4S domain IF561_19825 PF08361 MAATS-type transcriptional repressor, C-terminal region IF561_19825 PF00440 Bacterial regulatory proteins, tetR family IF561_19840 PF00211 Adenylate and Guanylate cyclase catalytic domain IF561_19840 PF00072 Response regulator receiver domain IF561_19865 PF03793 PASTA domain IF561_19865 PF00069 Protein kinase domain IF561_19880 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE IF561_19885 PF13677 Membrane MotB of proton-channel complex MotA/MotB IF561_19885 PF00691 OmpA family IF561_19890 PF06744 Type VI secretion protein IcmF C-terminal IF561_19890 PF14331 ImcF-related N-terminal domain IF561_19890 PF06761 Intracellular multiplication and human macrophage-killing IF561_19910 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 IF561_19915 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath IF561_19920 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath IF561_19935 PF05947 Type VI secretion system, TssF IF561_19945 PF10431 C-terminal, D2-small domain, of ClpB protein IF561_19945 PF00004 ATPase family associated with various cellular activities (AAA) IF561_19945 PF07724 AAA domain (Cdc48 subfamily) IF561_19945 PF17871 AAA lid domain IF561_19955 PF06715 Gp5 C-terminal repeat (3 copies) IF561_19955 PF04717 Type VI secretion system, phage-baseplate injector IF561_19970 PF00149 Calcineurin-like phosphoesterase IF561_19970 PF12320 Type 5 capsule protein repressor C-terminal domain IF561_19975 PF13476 AAA domain IF561_19995 PF08212 Lipocalin-like domain IF561_20005 PF07690 Major Facilitator Superfamily IF561_20015 PF03606 C4-dicarboxylate anaerobic carrier IF561_20020 PF00034 Cytochrome c IF561_20025 PF01212 Beta-eliminating lyase IF561_20035 PF07728 AAA domain (dynein-related subfamily) IF561_20035 PF17868 AAA lid domain IF561_20035 PF12592 Protein of unknown function (DUF3763) IF561_20040 PF05762 VWA domain containing CoxE-like protein IF561_20055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_20055 PF03466 LysR substrate binding domain IF561_20060 PF09330 D-lactate dehydrogenase, membrane binding IF561_20060 PF01565 FAD binding domain IF561_20075 PF00842 Alanine racemase, C-terminal domain IF561_20075 PF01168 Alanine racemase, N-terminal domain IF561_20080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IF561_20080 PF00672 HAMP domain IF561_20095 PF00128 Alpha amylase, catalytic domain IF561_20095 PF09154 Domain of unknown function (DUF1939) IF561_20115 PF06965 Na+/H+ antiporter 1 IF561_20115 PF13462 Thioredoxin IF561_20150 PF01272 Transcription elongation factor, GreA/GreB, C-term IF561_20150 PF14760 Rnk N-terminus IF561_20155 PF04324 BFD-like [2Fe-2S] binding domain IF561_20155 PF01077 Nitrite and sulphite reductase 4Fe-4S domain IF561_20155 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IF561_20155 PF07992 Pyridine nucleotide-disulphide oxidoreductase IF561_20155 PF18267 Rubredoxin NAD+ reductase C-terminal domain IF561_20160 PF13806 Rieske-like [2Fe-2S] domain IF561_20165 PF01226 Formate/nitrite transporter IF561_20170 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IF561_20170 PF14824 Sirohaem biosynthesis protein central IF561_20170 PF10414 Sirohaem synthase dimerisation region IF561_20185 PF03605 Anaerobic c4-dicarboxylate membrane transporter IF561_20195 PF07715 TonB-dependent Receptor Plug Domain IF561_20195 PF00593 TonB dependent receptor IF561_20210 PF11756 Nitrous oxide-stimulated promoter IF561_20215 PF01554 MatE IF561_20220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_20220 PF00512 His Kinase A (phospho-acceptor) domain IF561_20220 PF12833 Helix-turn-helix domain IF561_20220 PF07494 Two component regulator propeller IF561_20220 PF00072 Response regulator receiver domain IF561_20220 PF07495 Y_Y_Y domain IF561_20225 PF07690 Major Facilitator Superfamily IF561_20230 PF00085 Thioredoxin IF561_20235 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IF561_20235 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IF561_20255 PF01238 Phosphomannose isomerase type I IF561_20260 PF07690 Major Facilitator Superfamily IF561_20265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_20265 PF07730 Histidine kinase IF561_20265 PF05231 MASE1 IF561_20270 PF00196 Bacterial regulatory proteins, luxR family IF561_20270 PF00072 Response regulator receiver domain IF561_20275 PF07690 Major Facilitator Superfamily IF561_20280 PF02634 FdhD/NarQ family IF561_20285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_20285 PF03466 LysR substrate binding domain IF561_20290 PF00384 Molybdopterin oxidoreductase IF561_20295 PF07992 Pyridine nucleotide-disulphide oxidoreductase IF561_20295 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IF561_20310 PF04143 Sulphur transport IF561_20320 PF00873 AcrB/AcrD/AcrF family IF561_20325 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IF561_20335 PF03477 ATP cone domain IF561_20335 PF13597 Anaerobic ribonucleoside-triphosphate reductase IF561_20345 PF01554 MatE IF561_20350 PF12833 Helix-turn-helix domain IF561_20355 PF00155 Aminotransferase class I and II IF561_20360 PF18030 RimK PreATP-grasp domain IF561_20360 PF08443 RimK-like ATP-grasp domain IF561_20370 PF04076 Bacterial OB fold (BOF) protein IF561_20375 PF07685 CobB/CobQ-like glutamine amidotransferase domain IF561_20385 PF00528 Binding-protein-dependent transport system inner membrane component IF561_20390 PF03459 TOBE domain IF561_20390 PF00005 ABC transporter IF561_20400 PF00563 EAL domain IF561_20400 PF00360 Phytochrome region IF561_20400 PF00990 Diguanylate cyclase, GGDEF domain IF561_20400 PF01590 GAF domain IF561_20410 PF00990 Diguanylate cyclase, GGDEF domain IF561_20425 PF01262 Alanine dehydrogenase/PNT, C-terminal domain IF561_20425 PF05222 Alanine dehydrogenase/PNT, N-terminal domain IF561_20425 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch IF561_20430 PF02233 NAD(P) transhydrogenase beta subunit IF561_20440 PF00072 Response regulator receiver domain IF561_20440 PF00486 Transcriptional regulatory protein, C terminal IF561_20455 PF03701 Uncharacterised protein family (UPF0181) IF561_20460 PF00582 Universal stress protein family IF561_20470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_20470 PF03466 LysR substrate binding domain IF561_20510 PF00263 Bacterial type II and III secretion system protein IF561_20510 PF03958 Bacterial type II/III secretion system short domain IF561_20540 PF05840 Bacteriophage replication gene A protein (GPA) IF561_20555 PF01253 Translation initiation factor SUI1 IF561_20565 PF07478 D-ala D-ala ligase C-terminus IF561_20565 PF01820 D-ala D-ala ligase N-terminus IF561_20575 PF00583 Acetyltransferase (GNAT) family IF561_20575 PF13380 CoA binding domain IF561_20575 PF13607 Succinyl-CoA ligase like flavodoxin domain IF561_20580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_20580 PF03466 LysR substrate binding domain IF561_20585 PF07715 TonB-dependent Receptor Plug Domain IF561_20585 PF00593 TonB dependent receptor IF561_20590 PF16363 GDP-mannose 4,6 dehydratase IF561_20595 PF08447 PAS fold IF561_20595 PF00990 Diguanylate cyclase, GGDEF domain IF561_20595 PF05231 MASE1 IF561_20595 PF13426 PAS domain IF561_20595 PF08448 PAS fold IF561_20595 PF00563 EAL domain IF561_20600 PF03746 LamB/YcsF family IF561_20605 PF02682 Carboxyltransferase domain, subdomain C and D IF561_20610 PF02626 Carboxyltransferase domain, subdomain A and B IF561_20625 PF00005 ABC transporter IF561_20630 PF13472 GDSL-like Lipase/Acylhydrolase family IF561_20635 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase IF561_20635 PF12241 Trans-2-enoyl-CoA reductase catalytic region IF561_20635 PF07055 Enoyl reductase FAD binding domain IF561_20640 PF13188 PAS domain IF561_20640 PF03707 Bacterial signalling protein N terminal repeat IF561_20640 PF00990 Diguanylate cyclase, GGDEF domain IF561_20640 PF00563 EAL domain IF561_20650 PF00226 DnaJ domain IF561_20650 PF00684 DnaJ central domain IF561_20650 PF01556 DnaJ C terminal domain IF561_20675 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IF561_20675 PF12793 Sugar transport-related sRNA regulator N-term IF561_20685 PF03061 Thioesterase superfamily IF561_20700 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) IF561_20705 PF12262 Bacterial virulence factor lipase N-terminal IF561_20720 PF03741 Integral membrane protein TerC family IF561_20725 PF00149 Calcineurin-like phosphoesterase IF561_20725 PF02872 5'-nucleotidase, C-terminal domain IF561_20730 PF11398 Protein of unknown function (DUF2813) IF561_20735 PF06496 Protein of unknown function (DUF1097) IF561_20740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_20740 PF03466 LysR substrate binding domain IF561_20745 PF01226 Formate/nitrite transporter IF561_20750 PF04264 YceI-like domain IF561_20755 PF01292 Prokaryotic cytochrome b561 IF561_20770 PF12792 CSS motif domain associated with EAL IF561_20770 PF00563 EAL domain IF561_20775 PF00270 DEAD/DEAH box helicase IF561_20775 PF00271 Helicase conserved C-terminal domain IF561_20780 PF04336 Acyl carrier protein phosphodiesterase IF561_20785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IF561_20790 PF13419 Haloacid dehalogenase-like hydrolase IF561_20795 PF11849 Domain of unknown function (DUF3369) IF561_20810 PF00294 pfkB family carbohydrate kinase IF561_20815 PF01268 Formate--tetrahydrofolate ligase IF561_20820 PF00483 Nucleotidyl transferase IF561_20825 PF06483 Chitinase C IF561_20825 PF00704 Glycosyl hydrolases family 18 IF561_20830 PF12833 Helix-turn-helix domain IF561_20830 PF06719 AraC-type transcriptional regulator N-terminus IF561_20835 PF00465 Iron-containing alcohol dehydrogenase IF561_20845 PF14532 Sigma-54 interaction domain IF561_20845 PF02954 Bacterial regulatory protein, Fis family IF561_20845 PF00072 Response regulator receiver domain IF561_20850 PF00512 His Kinase A (phospho-acceptor) domain IF561_20850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_20850 PF00672 HAMP domain IF561_20860 PF07690 Major Facilitator Superfamily IF561_20865 PF00224 Pyruvate kinase, barrel domain IF561_20865 PF02887 Pyruvate kinase, alpha/beta domain IF561_20870 PF00005 ABC transporter IF561_20875 PF00528 Binding-protein-dependent transport system inner membrane component IF561_20880 PF00497 Bacterial extracellular solute-binding proteins, family 3 IF561_20885 PF00528 Binding-protein-dependent transport system inner membrane component IF561_20890 PF01590 GAF domain IF561_20890 PF00989 PAS fold IF561_20890 PF00563 EAL domain IF561_20890 PF00990 Diguanylate cyclase, GGDEF domain IF561_20905 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family IF561_20905 PF00356 Bacterial regulatory proteins, lacI family IF561_20910 PF00381 PTS HPr component phosphorylation site IF561_20910 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IF561_20915 PF00294 pfkB family carbohydrate kinase IF561_20920 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit IF561_20920 PF02378 Phosphotransferase system, EIIC IF561_20930 PF00873 AcrB/AcrD/AcrF family IF561_20950 PF08669 Glycine cleavage T-protein C-terminal barrel domain IF561_20950 PF01571 Aminomethyltransferase folate-binding domain IF561_20960 PF00464 Serine hydroxymethyltransferase IF561_20965 PF01597 Glycine cleavage H-protein IF561_20970 PF02347 Glycine cleavage system P-protein IF561_21000 PF01039 Carboxyl transferase domain IF561_21000 PF17848 Acetyl-coA carboxylase zinc finger domain IF561_21005 PF03466 LysR substrate binding domain IF561_21005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_21010 PF14579 Helix-hairpin-helix motif IF561_21010 PF02811 PHP domain IF561_21010 PF17657 Bacterial DNA polymerase III alpha subunit finger domain IF561_21010 PF00929 Exonuclease IF561_21010 PF07733 Bacterial DNA polymerase III alpha NTPase domain IF561_21010 PF11490 DNA polymerase III polC-type N-terminus II IF561_21015 PF00005 ABC transporter IF561_21015 PF00664 ABC transporter transmembrane region IF561_21035 PF02253 Phospholipase A1 IF561_21045 PF09278 MerR, DNA binding IF561_21045 PF00376 MerR family regulatory protein IF561_21050 PF01327 Polypeptide deformylase IF561_21080 PF00571 CBS domain IF561_21080 PF01769 Divalent cation transporter IF561_21080 PF03448 MgtE intracellular N domain IF561_21100 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IF561_21105 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IF561_21115 PF01757 Acyltransferase family IF561_21125 PF09722 Protein of unknown function (DUF2384) IF561_21130 PF00141 Peroxidase IF561_21135 PF13187 4Fe-4S dicluster domain IF561_21135 PF01645 Conserved region in glutamate synthase IF561_21145 PF00072 Response regulator receiver domain IF561_21145 PF12431 Transcriptional regulator IF561_21150 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain IF561_21150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_21150 PF00989 PAS fold IF561_21150 PF17203 Single cache domain 3 IF561_21155 PF00939 Sodium:sulfate symporter transmembrane region IF561_21160 PF00171 Aldehyde dehydrogenase family IF561_21180 PF00892 EamA-like transporter family IF561_21185 PF00893 Small Multidrug Resistance protein IF561_21190 PF03413 Peptidase propeptide and YPEB domain IF561_21190 PF04151 Bacterial pre-peptidase C-terminal domain IF561_21190 PF02868 Thermolysin metallopeptidase, alpha-helical domain IF561_21190 PF07504 Fungalysin/Thermolysin Propeptide Motif IF561_21190 PF01447 Thermolysin metallopeptidase, catalytic domain IF561_21200 PF01569 PAP2 superfamily IF561_21210 PF00892 EamA-like transporter family IF561_21225 PF01584 CheW-like domain IF561_21225 PF00072 Response regulator receiver domain IF561_21245 PF00196 Bacterial regulatory proteins, luxR family IF561_21245 PF00072 Response regulator receiver domain IF561_21255 PF00990 Diguanylate cyclase, GGDEF domain IF561_21260 PF00196 Bacterial regulatory proteins, luxR family IF561_21260 PF00072 Response regulator receiver domain IF561_21265 PF03707 Bacterial signalling protein N terminal repeat IF561_21265 PF13188 PAS domain IF561_21265 PF00990 Diguanylate cyclase, GGDEF domain IF561_21265 PF00563 EAL domain IF561_21270 PF00512 His Kinase A (phospho-acceptor) domain IF561_21270 PF00072 Response regulator receiver domain IF561_21270 PF09456 RcsC Alpha-Beta-Loop (ABL) IF561_21270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_21280 PF03466 LysR substrate binding domain IF561_21280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_21285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_21285 PF03466 LysR substrate binding domain IF561_21295 PF00691 OmpA family IF561_21295 PF05736 OprF membrane domain IF561_21330 PF00437 Type II/IV secretion system protein IF561_21345 PF13629 Pilus formation protein N terminal region IF561_21345 PF00263 Bacterial type II and III secretion system protein IF561_21345 PF04972 BON domain IF561_21365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_21365 PF03466 LysR substrate binding domain IF561_21370 PF12833 Helix-turn-helix domain IF561_21380 PF01752 Collagenase IF561_21380 PF08453 Peptidase family M9 N-terminal IF561_21380 PF04151 Bacterial pre-peptidase C-terminal domain IF561_21390 PF01926 50S ribosome-binding GTPase IF561_21395 PF00155 Aminotransferase class I and II IF561_21400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_21400 PF00072 Response regulator receiver domain IF561_21410 PF00583 Acetyltransferase (GNAT) family IF561_21410 PF00814 Glycoprotease family IF561_21420 PF03606 C4-dicarboxylate anaerobic carrier IF561_21425 PF04011 LemA family IF561_21430 PF01435 Peptidase family M48 IF561_21445 PF08774 VRR-NUC domain IF561_21445 PF18081 Fanconi anemia-associated nuclease SAP domain IF561_21455 PF13186 Iron-sulfur cluster-binding domain IF561_21455 PF04055 Radical SAM superfamily IF561_21470 PF04076 Bacterial OB fold (BOF) protein IF561_21475 PF00781 Diacylglycerol kinase catalytic domain IF561_21480 PF03466 LysR substrate binding domain IF561_21480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_21485 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region IF561_21500 PF00092 von Willebrand factor type A domain IF561_21515 PF17863 AAA lid domain IF561_21515 PF07726 ATPase family associated with various cellular activities (AAA) IF561_21520 PF04055 Radical SAM superfamily IF561_21520 PF13186 Iron-sulfur cluster-binding domain IF561_21525 PF00884 Sulfatase IF561_21530 PF03466 LysR substrate binding domain IF561_21530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_21540 PF00884 Sulfatase IF561_21545 PF00884 Sulfatase IF561_21545 PF16385 Domain of unknown function IF561_21550 PF00072 Response regulator receiver domain IF561_21550 PF00486 Transcriptional regulatory protein, C terminal IF561_21565 PF00672 HAMP domain IF561_21565 PF00512 His Kinase A (phospho-acceptor) domain IF561_21565 PF01627 Hpt domain IF561_21565 PF00072 Response regulator receiver domain IF561_21565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_21570 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family IF561_21575 PF02142 MGS-like domain IF561_21580 PF12462 DNA helicase IV / RNA helicase N terminal IF561_21580 PF00580 UvrD/REP helicase N-terminal domain IF561_21580 PF13361 UvrD-like helicase C-terminal domain IF561_21585 PF12805 FUSC-like inner membrane protein yccS IF561_21615 PF07715 TonB-dependent Receptor Plug Domain IF561_21615 PF00593 TonB dependent receptor IF561_21625 PF13411 MerR HTH family regulatory protein IF561_21630 PF00005 ABC transporter IF561_21635 PF01032 FecCD transport family IF561_21640 PF01032 FecCD transport family IF561_21645 PF01497 Periplasmic binding protein IF561_21665 PF04314 Copper chaperone PCu(A)C IF561_21670 PF00012 Hsp70 protein IF561_21685 PF00676 Dehydrogenase E1 component IF561_21690 PF02779 Transketolase, pyrimidine binding domain IF561_21690 PF02780 Transketolase, C-terminal domain IF561_21695 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IF561_21695 PF02817 e3 binding domain IF561_21695 PF00364 Biotin-requiring enzyme IF561_21705 PF02798 Glutathione S-transferase, N-terminal domain IF561_21705 PF00043 Glutathione S-transferase, C-terminal domain IF561_21710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_21710 PF03466 LysR substrate binding domain IF561_21720 PF00528 Binding-protein-dependent transport system inner membrane component IF561_21725 PF00528 Binding-protein-dependent transport system inner membrane component IF561_21730 PF00497 Bacterial extracellular solute-binding proteins, family 3 IF561_21735 PF00005 ABC transporter IF561_21740 PF08031 Berberine and berberine like IF561_21740 PF01565 FAD binding domain IF561_21745 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IF561_21755 PF01040 UbiA prenyltransferase family IF561_21765 PF00510 Cytochrome c oxidase subunit III IF561_21770 PF00115 Cytochrome C and Quinol oxidase polypeptide I IF561_21775 PF00116 Cytochrome C oxidase subunit II, periplasmic domain IF561_21775 PF06481 COX Aromatic Rich Motif IF561_21785 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IF561_21785 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IF561_21790 PF00378 Enoyl-CoA hydratase/isomerase IF561_21795 PF00378 Enoyl-CoA hydratase/isomerase IF561_21800 PF02770 Acyl-CoA dehydrogenase, middle domain IF561_21800 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IF561_21800 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IF561_21805 PF00171 Aldehyde dehydrogenase family IF561_21810 PF02803 Thiolase, C-terminal domain IF561_21810 PF00108 Thiolase, N-terminal domain IF561_21815 PF09278 MerR, DNA binding IF561_21815 PF00376 MerR family regulatory protein IF561_21820 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IF561_21820 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IF561_21820 PF02770 Acyl-CoA dehydrogenase, middle domain IF561_21825 PF01039 Carboxyl transferase domain IF561_21830 PF00378 Enoyl-CoA hydratase/isomerase IF561_21835 PF00682 HMGL-like IF561_21840 PF10063 Uncharacterized integral membrane protein (DUF2301) IF561_21850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IF561_21850 PF08447 PAS fold IF561_21850 PF13426 PAS domain IF561_21855 PF00871 Acetokinase family IF561_21860 PF13426 PAS domain IF561_21860 PF00990 Diguanylate cyclase, GGDEF domain IF561_21860 PF00563 EAL domain IF561_21865 PF03880 DbpA RNA binding domain IF561_21865 PF00271 Helicase conserved C-terminal domain IF561_21865 PF00270 DEAD/DEAH box helicase IF561_21870 PF08206 Ribonuclease B OB domain IF561_21870 PF00575 S1 RNA binding domain IF561_21870 PF00773 RNB domain IF561_21875 PF12833 Helix-turn-helix domain IF561_21885 PF12849 PBP superfamily domain IF561_21890 PF01575 MaoC like domain IF561_21900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_21900 PF03466 LysR substrate binding domain IF561_21905 PF13186 Iron-sulfur cluster-binding domain IF561_21905 PF04055 Radical SAM superfamily IF561_21910 PF00884 Sulfatase IF561_21915 PF03466 LysR substrate binding domain IF561_21915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_21925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IF561_21925 PF00672 HAMP domain IF561_21925 PF12729 Four helix bundle sensory module for signal transduction IF561_21930 PF00005 ABC transporter IF561_21935 PF12792 CSS motif domain associated with EAL IF561_21935 PF00563 EAL domain IF561_21955 PF00270 DEAD/DEAH box helicase IF561_21955 PF00271 Helicase conserved C-terminal domain IF561_21960 PF02492 CobW/HypB/UreG, nucleotide-binding domain IF561_21960 PF07683 Cobalamin synthesis protein cobW C-terminal domain IF561_21970 PF01470 Pyroglutamyl peptidase IF561_21980 PF00291 Pyridoxal-phosphate dependent enzyme IF561_21985 PF09905 DNA-binding protein VF530 IF561_21990 PF00271 Helicase conserved C-terminal domain IF561_21990 PF00270 DEAD/DEAH box helicase IF561_21995 PF12843 Putative quorum-sensing-regulated virulence factor IF561_22015 PF01329 Pterin 4 alpha carbinolamine dehydratase IF561_22020 PF00351 Biopterin-dependent aromatic amino acid hydroxylase IF561_22025 PF13193 AMP-binding enzyme C-terminal domain IF561_22025 PF00501 AMP-binding enzyme IF561_22035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_22035 PF03466 LysR substrate binding domain IF561_22060 PF00892 EamA-like transporter family IF561_22075 PF00465 Iron-containing alcohol dehydrogenase IF561_22080 PF07995 Glucose / Sorbosone dehydrogenase IF561_22090 PF00210 Ferritin-like domain IF561_22095 PF00672 HAMP domain IF561_22095 PF17200 Single Cache domain 2 IF561_22095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IF561_22105 PF12704 MacB-like periplasmic core domain IF561_22105 PF02687 FtsX-like permease family IF561_22105 PF00005 ABC transporter IF561_22110 PF00005 ABC transporter IF561_22110 PF02687 FtsX-like permease family IF561_22110 PF12704 MacB-like periplasmic core domain IF561_22125 PF00990 Diguanylate cyclase, GGDEF domain IF561_22130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IF561_22130 PF08447 PAS fold IF561_22130 PF13426 PAS domain IF561_22135 PF03889 Alternative ribosome-rescue factor A IF561_22140 PF00313 'Cold-shock' DNA-binding domain IF561_22170 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IF561_22170 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase IF561_22175 PF01040 UbiA prenyltransferase family IF561_22180 PF02628 Cytochrome oxidase assembly protein IF561_22200 PF00510 Cytochrome c oxidase subunit III IF561_22205 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 IF561_22210 PF00115 Cytochrome C and Quinol oxidase polypeptide I IF561_22215 PF00116 Cytochrome C oxidase subunit II, periplasmic domain IF561_22215 PF02790 Cytochrome C oxidase subunit II, transmembrane domain IF561_22220 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IF561_22220 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IF561_22220 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IF561_22220 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IF561_22230 PF01810 LysE type translocator IF561_22235 PF12833 Helix-turn-helix domain IF561_22250 PF01557 Fumarylacetoacetate (FAA) hydrolase family IF561_22260 PF00267 Gram-negative porin IF561_22265 PF00892 EamA-like transporter family IF561_22270 PF00462 Glutaredoxin IF561_22280 PF07690 Major Facilitator Superfamily IF561_22285 PF03466 LysR substrate binding domain IF561_22285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_22290 PF00990 Diguanylate cyclase, GGDEF domain IF561_22290 PF08447 PAS fold IF561_22290 PF08448 PAS fold IF561_22290 PF00563 EAL domain IF561_22295 PF08525 Opacity-associated protein A N-terminal motif IF561_22295 PF01476 LysM domain IF561_22295 PF01551 Peptidase family M23 IF561_22315 PF07670 Nucleoside recognition IF561_22320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IF561_22320 PF02743 Cache domain IF561_22320 PF00672 HAMP domain IF561_22330 PF03222 Tryptophan/tyrosine permease family IF561_22365 PF08240 Alcohol dehydrogenase GroES-like domain IF561_22365 PF00107 Zinc-binding dehydrogenase IF561_22370 PF02378 Phosphotransferase system, EIIC IF561_22370 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit IF561_22375 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IF561_22390 PF01758 Sodium Bile acid symporter family IF561_22400 PF01161 Phosphatidylethanolamine-binding protein IF561_22405 PF02567 Phenazine biosynthesis-like protein IF561_22410 PF10282 Lactonase, 7-bladed beta-propeller IF561_22415 PF00672 HAMP domain IF561_22415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IF561_22425 PF00005 ABC transporter IF561_22445 PF12838 4Fe-4S dicluster domain IF561_22445 PF01568 Molydopterin dinucleotide binding domain IF561_22445 PF00384 Molybdopterin oxidoreductase IF561_22445 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region IF561_22445 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IF561_22465 PF00873 AcrB/AcrD/AcrF family IF561_22485 PF00990 Diguanylate cyclase, GGDEF domain IF561_22495 PF13302 Acetyltransferase (GNAT) domain IF561_22505 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) IF561_22510 PF00873 AcrB/AcrD/AcrF family IF561_22515 PF13533 Biotin-lipoyl like IF561_22525 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain IF561_22525 PF00326 Prolyl oligopeptidase family IF561_22530 PF00005 ABC transporter IF561_22530 PF12848 ABC transporter IF561_22530 PF16326 ABC transporter C-terminal domain IF561_22535 PF00582 Universal stress protein family IF561_22540 PF02525 Flavodoxin-like fold IF561_22545 PF00999 Sodium/hydrogen exchanger family IF561_22545 PF02254 TrkA-N domain IF561_22560 PF00128 Alpha amylase, catalytic domain IF561_22570 PF08453 Peptidase family M9 N-terminal IF561_22570 PF01752 Collagenase IF561_22570 PF04151 Bacterial pre-peptidase C-terminal domain IF561_22585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_22585 PF03466 LysR substrate binding domain IF561_22590 PF00210 Ferritin-like domain IF561_22595 PF00141 Peroxidase IF561_22615 PF00082 Subtilase family IF561_22625 PF00580 UvrD/REP helicase N-terminal domain IF561_22625 PF13361 UvrD-like helicase C-terminal domain IF561_22630 PF07690 Major Facilitator Superfamily IF561_22635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_22635 PF03466 LysR substrate binding domain IF561_22650 PF02796 Helix-turn-helix domain of resolvase IF561_22650 PF00239 Resolvase, N terminal domain IF561_22670 PF01584 CheW-like domain IF561_22670 PF00072 Response regulator receiver domain IF561_22680 PF01243 Pyridoxamine 5'-phosphate oxidase IF561_22685 PF06228 Haem utilisation ChuX/HutX IF561_22690 PF04055 Radical SAM superfamily IF561_22695 PF03544 Gram-negative bacterial TonB protein C-terminal IF561_22700 PF01618 MotA/TolQ/ExbB proton channel family IF561_22705 PF02472 Biopolymer transport protein ExbD/TolR IF561_22715 PF01032 FecCD transport family IF561_22720 PF00005 ABC transporter IF561_22760 PF01467 Cytidylyltransferase-like IF561_22765 PF02540 NAD synthase IF561_22770 PF03476 MOSC N-terminal beta barrel domain IF561_22770 PF03473 MOSC domain IF561_22770 PF03476 MOSC N-terminal beta barrel domain IF561_22770 PF03473 MOSC domain IF561_22770 PF00111 2Fe-2S iron-sulfur cluster binding domain IF561_22770 PF00111 2Fe-2S iron-sulfur cluster binding domain IF561_22775 PF01679 Proteolipid membrane potential modulator IF561_22780 PF01979 Amidohydrolase family IF561_22785 PF05661 Protein of unknown function (DUF808) IF561_22815 PF01497 Periplasmic binding protein IF561_22815 PF12833 Helix-turn-helix domain IF561_22820 PF00155 Aminotransferase class I and II IF561_22845 PF00535 Glycosyl transferase family 2 IF561_22860 PF00271 Helicase conserved C-terminal domain IF561_22860 PF00270 DEAD/DEAH box helicase IF561_22870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_22870 PF03466 LysR substrate binding domain IF561_22875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_22875 PF03466 LysR substrate binding domain IF561_22885 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IF561_22890 PF08240 Alcohol dehydrogenase GroES-like domain IF561_22890 PF00107 Zinc-binding dehydrogenase IF561_22905 PF12833 Helix-turn-helix domain IF561_22905 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term IF561_22910 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) IF561_22925 PF03466 LysR substrate binding domain IF561_22925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_22930 PF00709 Adenylosuccinate synthetase IF561_22935 PF17763 Glutaminase/Asparaginase C-terminal domain IF561_22935 PF00710 Asparaginase, N-terminal IF561_22940 PF03618 Kinase/pyrophosphorylase IF561_22945 PF00391 PEP-utilising enzyme, mobile domain IF561_22945 PF02896 PEP-utilising enzyme, TIM barrel domain IF561_22945 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain IF561_22960 PF00579 tRNA synthetases class I (W and Y) IF561_22965 PF13416 Bacterial extracellular solute-binding protein IF561_22975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_22975 PF03466 LysR substrate binding domain IF561_22980 PF13533 Biotin-lipoyl like IF561_22985 PF00873 AcrB/AcrD/AcrF family IF561_23000 PF07694 5TMR of 5TMR-LYT IF561_23000 PF00990 Diguanylate cyclase, GGDEF domain IF561_23010 PF00196 Bacterial regulatory proteins, luxR family IF561_23015 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 IF561_23015 PF00703 Glycosyl hydrolases family 2 IF561_23015 PF02836 Glycosyl hydrolases family 2, TIM barrel domain IF561_23015 PF02837 Glycosyl hydrolases family 2, sugar binding domain IF561_23020 PF02028 BCCT, betaine/carnitine/choline family transporter IF561_23025 PF00392 Bacterial regulatory proteins, gntR family IF561_23025 PF07702 UTRA domain IF561_23050 PF00005 ABC transporter IF561_23050 PF08402 TOBE domain IF561_23075 PF00873 AcrB/AcrD/AcrF family IF561_23080 PF13533 Biotin-lipoyl like IF561_23085 PF13091 PLD-like domain IF561_23110 PF00376 MerR family regulatory protein IF561_23110 PF09278 MerR, DNA binding IF561_23120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_23120 PF03466 LysR substrate binding domain IF561_23130 PF13378 Enolase C-terminal domain-like IF561_23130 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain IF561_23135 PF00009 Elongation factor Tu GTP binding domain IF561_23135 PF03764 Elongation factor G, domain IV IF561_23135 PF14492 Elongation Factor G, domain II IF561_23135 PF03144 Elongation factor Tu domain 2 IF561_23135 PF00679 Elongation factor G C-terminus IF561_23160 PF02001 Protein of unknown function DUF134 IF561_23165 PF17185 NlpE C-terminal OB domain IF561_23165 PF04170 NlpE N-terminal domain IF561_23170 PF06629 MltA-interacting protein MipA IF561_23180 PF01389 OmpA-like transmembrane domain IF561_23180 PF00691 OmpA family IF561_23185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_23185 PF03466 LysR substrate binding domain IF561_23205 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain IF561_23205 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family IF561_23215 PF00857 Isochorismatase family IF561_23225 PF00199 Catalase IF561_23225 PF06628 Catalase-related immune-responsive IF561_23235 PF00455 DeoR C terminal sensor domain IF561_23235 PF08220 DeoR-like helix-turn-helix domain IF561_23240 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IF561_23245 PF01625 Peptide methionine sulfoxide reductase IF561_23245 PF01641 SelR domain IF561_23255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_23255 PF03466 LysR substrate binding domain IF561_23270 PF03060 Nitronate monooxygenase IF561_23275 PF02872 5'-nucleotidase, C-terminal domain IF561_23275 PF00149 Calcineurin-like phosphoesterase IF561_23285 PF08359 YsiA-like protein, C-terminal region IF561_23285 PF00440 Bacterial regulatory proteins, tetR family IF561_23300 PF03466 LysR substrate binding domain IF561_23300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_23305 PF01810 LysE type translocator IF561_23320 PF00118 TCP-1/cpn60 chaperonin family IF561_23325 PF00166 Chaperonin 10 Kd subunit IF561_23330 PF00581 Rhodanese-like domain IF561_23355 PF01070 FMN-dependent dehydrogenase IF561_23375 PF00669 Bacterial flagellin N-terminal helical region IF561_23380 PF00460 Flagella basal body rod protein IF561_23380 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IF561_23385 PF10135 Rod binding protein IF561_23385 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase IF561_23390 PF02119 Flagellar P-ring protein IF561_23395 PF02107 Flagellar L-ring protein IF561_23400 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IF561_23400 PF00460 Flagella basal body rod protein IF561_23405 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IF561_23405 PF00460 Flagella basal body rod protein IF561_23410 PF00460 Flagella basal body rod protein IF561_23410 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IF561_23410 PF07559 Flagellar basal body protein FlaE IF561_23415 PF03963 Flagellar hook capping protein - N-terminal region IF561_23415 PF13860 FlgD Ig-like domain IF561_23415 PF13861 FlgD Tudor-like domain IF561_23420 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IF561_23420 PF00460 Flagella basal body rod protein IF561_23425 PF00460 Flagella basal body rod protein IF561_23445 PF01464 Transglycosylase SLT domain IF561_23450 PF08264 Anticodon-binding domain of tRNA IF561_23450 PF00133 tRNA synthetases class I (I, L, M and V) IF561_23470 PF03313 Serine dehydratase alpha chain IF561_23470 PF03315 Serine dehydratase beta chain IF561_23475 PF00854 POT family IF561_23485 PF03466 LysR substrate binding domain IF561_23485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_23495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_23495 PF03466 LysR substrate binding domain IF561_23500 PF01389 OmpA-like transmembrane domain IF561_23500 PF00691 OmpA family IF561_23505 PF18027 Cytosolic carboxypeptidase N-terminal domain IF561_23505 PF00246 Zinc carboxypeptidase IF561_23510 PF01266 FAD dependent oxidoreductase IF561_23515 PF04393 Protein of unknown function (DUF535) IF561_23530 PF07702 UTRA domain IF561_23530 PF00392 Bacterial regulatory proteins, gntR family IF561_23535 PF00528 Binding-protein-dependent transport system inner membrane component IF561_23540 PF00005 ABC transporter IF561_23555 PF00266 Aminotransferase class-V IF561_23560 PF00202 Aminotransferase class-III IF561_23565 PF13419 Haloacid dehalogenase-like hydrolase IF561_23570 PF00356 Bacterial regulatory proteins, lacI family IF561_23575 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IF561_23585 PF03611 PTS system sugar-specific permease component IF561_23595 PF00082 Subtilase family IF561_23595 PF05922 Peptidase inhibitor I9 IF561_23600 PF00657 GDSL-like Lipase/Acylhydrolase IF561_23605 PF02321 Outer membrane efflux protein IF561_23610 PF12704 MacB-like periplasmic core domain IF561_23610 PF02687 FtsX-like permease family IF561_23610 PF00005 ABC transporter IF561_23615 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IF561_23620 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) IF561_23625 PF00194 Eukaryotic-type carbonic anhydrase IF561_23630 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) IF561_23645 PF13419 Haloacid dehalogenase-like hydrolase IF561_23650 PF03466 LysR substrate binding domain IF561_23650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_23685 PF14602 Hexapeptide repeat of succinyl-transferase IF561_23685 PF12464 Maltose acetyltransferase IF561_23690 PF02566 OsmC-like protein IF561_23695 PF01641 SelR domain IF561_23695 PF01625 Peptide methionine sulfoxide reductase IF561_23710 PF04244 Deoxyribodipyrimidine photo-lyase-related protein IF561_23715 PF00875 DNA photolyase IF561_23715 PF03441 FAD binding domain of DNA photolyase IF561_23720 PF00990 Diguanylate cyclase, GGDEF domain IF561_23735 PF00672 HAMP domain IF561_23735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IF561_23735 PF12729 Four helix bundle sensory module for signal transduction IF561_23740 PF05230 MASE2 domain IF561_23740 PF00990 Diguanylate cyclase, GGDEF domain IF561_23745 PF13532 2OG-Fe(II) oxygenase superfamily IF561_23755 PF07662 Na+ dependent nucleoside transporter C-terminus IF561_23755 PF07670 Nucleoside recognition IF561_23755 PF01773 Na+ dependent nucleoside transporter N-terminus IF561_23770 PF01212 Beta-eliminating lyase IF561_23780 PF01266 FAD dependent oxidoreductase IF561_23795 PF05525 Branched-chain amino acid transport protein IF561_23800 PF08448 PAS fold IF561_23800 PF00990 Diguanylate cyclase, GGDEF domain IF561_23805 PF00158 Sigma-54 interaction domain IF561_23805 PF00072 Response regulator receiver domain IF561_23805 PF02954 Bacterial regulatory protein, Fis family IF561_23810 PF02743 Cache domain IF561_23810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_23810 PF00512 His Kinase A (phospho-acceptor) domain IF561_23815 PF00232 Glycosyl hydrolase family 1 IF561_23840 PF03466 LysR substrate binding domain IF561_23840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IF561_23845 PF18030 RimK PreATP-grasp domain IF561_23845 PF08443 RimK-like ATP-grasp domain IF561_23850 PF08443 RimK-like ATP-grasp domain IF561_23850 PF18030 RimK PreATP-grasp domain IF561_23855 PF00753 Metallo-beta-lactamase superfamily IF561_23860 PF17810 Arginine decarboxylase helical bundle domain IF561_23860 PF17944 Arginine decarboxylase C-terminal helical extension IF561_23860 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain IF561_23865 PF00491 Arginase family IF561_23870 PF07690 Major Facilitator Superfamily IF561_23875 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain IF561_23875 PF00326 Prolyl oligopeptidase family IF561_23890 PF00950 ABC 3 transport family IF561_23895 PF00005 ABC transporter IF561_23900 PF01297 Zinc-uptake complex component A periplasmic IF561_23940 PF02472 Biopolymer transport protein ExbD/TolR IF561_23945 PF01618 MotA/TolQ/ExbB proton channel family IF561_23950 PF01618 MotA/TolQ/ExbB proton channel family IF561_23960 PF07715 TonB-dependent Receptor Plug Domain IF561_23960 PF00593 TonB dependent receptor IF561_23965 PF00672 HAMP domain IF561_23965 PF00512 His Kinase A (phospho-acceptor) domain IF561_23965 PF16750 Sensor domain of 2-component histidine kinase IF561_23965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IF561_23970 PF00072 Response regulator receiver domain IF561_23970 PF00486 Transcriptional regulatory protein, C terminal IF561_23975 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain IF561_23975 PF00056 lactate/malate dehydrogenase, NAD binding domain IF561_23980 PF03009 Glycerophosphoryl diester phosphodiesterase family IF561_23990 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IF561_23990 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IF561_23995 PF10928 Protein of unknown function (DUF2810) IF561_24000 PF00154 recA bacterial DNA recombination protein IF561_24065 PF00437 Type II/IV secretion system protein IF561_24075 PF00263 Bacterial type II and III secretion system protein IF561_24075 PF07655 Secretin N-terminal domain IF561_24090 PF00437 Type II/IV secretion system protein IF561_24105 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain IF561_24105 PF00437 Type II/IV secretion system protein IF561_24115 PF13186 Iron-sulfur cluster-binding domain IF561_24115 PF04055 Radical SAM superfamily IF561_24165 PF00929 Exonuclease IF561_24165 PF08411 Exonuclease C-terminal IF561_24210 PF01751 Toprim domain IF561_24210 PF01396 Topoisomerase DNA binding C4 zinc finger IF561_24210 PF01131 DNA topoisomerase IF561_24225 PF06689 ClpX C4-type zinc finger IF561_24225 PF07724 AAA domain (Cdc48 subfamily) IF561_24225 PF10431 C-terminal, D2-small domain, of ClpB protein IF561_24230 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain IF561_24230 PF00476 DNA polymerase family A IF561_24230 PF01367 5'-3' exonuclease, C-terminal SAM fold IF561_24270 PF02463 RecF/RecN/SMC N terminal domain IF561_24280 PF13361 UvrD-like helicase C-terminal domain IF561_24280 PF00580 UvrD/REP helicase N-terminal domain IF561_24290 PF01131 DNA topoisomerase IF561_24290 PF01751 Toprim domain IF561_24295 PF00563 EAL domain IF561_24295 PF05231 MASE1 IF561_24315 PF00270 DEAD/DEAH box helicase IF561_24315 PF00271 Helicase conserved C-terminal domain IF561_24315 PF17191 RecG wedge domain IF561_24320 PF01521 Iron-sulphur cluster biosynthesis IF561_24335 PF01336 OB-fold nucleic acid binding domain IF561_24335 PF14579 Helix-hairpin-helix motif IF561_24335 PF02811 PHP domain IF561_24335 PF07733 Bacterial DNA polymerase III alpha NTPase domain IF561_24335 PF17657 Bacterial DNA polymerase III alpha subunit finger domain IF561_24340 PF00772 DnaB-like helicase N terminal domain IF561_24340 PF03796 DnaB-like helicase C terminal domain IF561_24345 PF00929 Exonuclease IF561_24355 PF02163 Peptidase family M50 IF561_24355 PF17820 PDZ domain IF561_24375 PF01368 DHH family IF561_24375 PF02272 DHHA1 domain IF561_24375 PF17768 RecJ OB domain IF561_24385 PF13538 UvrD-like helicase C-terminal domain IF561_24395 PF00270 DEAD/DEAH box helicase IF561_24395 PF00271 Helicase conserved C-terminal domain IF561_24395 PF00570 HRDC domain IF561_24395 PF16124 RecQ zinc-binding IF561_24395 PF09382 RQC domain IF561_24400 PF02223 Thymidylate kinase IF561_24430 PF00437 Type II/IV secretion system protein IF561_24500 PF04381 Putative exonuclease, RdgC IF561_24535 PF02463 RecF/RecN/SMC N terminal domain IF561_24555 PF01966 HD domain IF561_24565 PF02810 SEC-C motif IF561_24565 PF07517 SecA DEAD-like domain IF561_24565 PF01043 SecA preprotein cross-linking domain IF561_24565 PF07516 SecA Wing and Scaffold domain IF561_24575 PF00211 Adenylate and Guanylate cyclase catalytic domain IF561_24590 PF00574 Clp protease IF561_24610 PF06750 Bacterial Peptidase A24 N-terminal domain IF561_24610 PF01478 Type IV leader peptidase family IF561_24630 PF17757 UvrB interaction domain IF561_24630 PF00271 Helicase conserved C-terminal domain IF561_24630 PF02559 CarD-like/TRCF domain IF561_24630 PF00270 DEAD/DEAH box helicase IF561_24630 PF03461 TRCF domain IF561_24710 PF04362 Bacterial Fe(2+) trafficking IF561_24740 PF05970 PIF1-like helicase IF561_24805 PF00266 Aminotransferase class-V IF561_24820 PF00580 UvrD/REP helicase N-terminal domain IF561_24820 PF13361 UvrD-like helicase C-terminal domain IF561_25135 PF00990 Diguanylate cyclase, GGDEF domain IF561_25150 PF08668 HDOD domain IF561_25150 PF00563 EAL domain IF561_25175 PF18073 Rubredoxin metal binding domain IF561_25185 PF02342 TerD domain IF561_25190 PF02342 TerD domain IF561_25205 PF11202 Phosphoribosyl transferase (PRTase) IF561_25205 PF15608 PELOTA RNA binding domain IF561_25220 PF02342 TerD domain IF561_25240 PF00268 Ribonucleotide reductase, small chain IF561_25245 PF02867 Ribonucleotide reductase, barrel domain IF561_25245 PF00317 Ribonucleotide reductase, all-alpha domain IF561_25245 PF03477 ATP cone domain IF561_25270 PF01292 Prokaryotic cytochrome b561 IF561_25275 PF04264 YceI-like domain IF561_25295 PF02086 D12 class N6 adenine-specific DNA methyltransferase IF561_25330 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase IF561_25335 PF01467 Cytidylyltransferase-like IF561_25340 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family IF561_25340 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain IF561_25360 PF12792 CSS motif domain associated with EAL IF561_25360 PF00563 EAL domain IF561_25385 PF00265 Thymidine kinase IF561_25400 PF01521 Iron-sulphur cluster biosynthesis IF561_25405 PF01592 NifU-like N terminal domain IF561_25415 PF03120 NAD-dependent DNA ligase OB-fold domain IF561_25415 PF00533 BRCA1 C Terminus (BRCT) domain IF561_25415 PF01653 NAD-dependent DNA ligase adenylation domain IF561_25415 PF12826 Helix-hairpin-helix motif IF561_25415 PF03119 NAD-dependent DNA ligase C4 zinc finger domain IF561_25440 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein IF561_25450 PF00816 H-NS histone family IF561_25490 PF00216 Bacterial DNA-binding protein IF561_25520 PF00691 OmpA family IF561_25530 PF01668 SmpB protein IF561_25730 PF00186 Dihydrofolate reductase IF561_25745 PF02601 Exonuclease VII, large subunit IF561_25745 PF13742 OB-fold nucleic acid binding domain IF561_25750 PF10138 vWA found in TerF C terminus IF561_25835 PF03167 Uracil DNA glycosylase superfamily IF561_25845 PF00216 Bacterial DNA-binding protein IF561_25880 PF02146 Sir2 family IF561_25950 PF00303 Thymidylate synthase IF561_25995 PF00476 DNA polymerase family A IF561_25995 PF01612 3'-5' exonuclease IF561_25995 PF01367 5'-3' exonuclease, C-terminal SAM fold IF561_25995 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain IF561_26075 PF12323 Helix-turn-helix domain IF561_26145 PF00334 Nucleoside diphosphate kinase IF561_26205 PF13438 Domain of unknown function (DUF4113) IF561_26205 PF00817 impB/mucB/samB family IF561_26205 PF11799 impB/mucB/samB family C-terminal domain IF561_26205 PF11798 IMS family HHH motif IF561_26215 PF08019 Phosphoethanolamine transferase EptA/EptB IF561_26215 PF00884 Sulfatase IF561_26220 PF01219 Prokaryotic diacylglycerol kinase IF561_26345 PF11202 Phosphoribosyl transferase (PRTase) IF561_26345 PF15608 PELOTA RNA binding domain IF561_26355 PF00464 Serine hydroxymethyltransferase IF561_26380 PF01027 Inhibitor of apoptosis-promoting Bax1 IF561_26390 PF02631 RecX family IF561_26420 PF02464 Competence-damaged protein IF561_26420 PF00994 Probable molybdopterin binding domain IF561_26475 PF01693 Caulimovirus viroplasmin IF561_26495 PF00145 C-5 cytosine-specific DNA methylase IF561_26495 PF13411 MerR HTH family regulatory protein IF561_26500 PF01171 PP-loop family IF561_26500 PF09179 TilS substrate binding domain IF561_26500 PF11734 TilS substrate C-terminal domain IF561_26575 PF06965 Na+/H+ antiporter 1 IF561_26580 PF00149 Calcineurin-like phosphoesterase IF561_26675 PF00436 Single-strand binding protein family IF561_26680 PF02600 Disulfide bond formation protein DsbB IF561_26790 PF01594 AI-2E family transporter IF561_26810 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family IF561_26850 PF12323 Helix-turn-helix domain IF561_26865 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal IF561_26865 PF01926 50S ribosome-binding GTPase IF561_26985 PF13533 Biotin-lipoyl like IF561_27055 PF12627 Probable RNA and SrmB- binding site of polymerase A IF561_27055 PF01743 Poly A polymerase head domain IF561_27055 PF01966 HD domain IF561_27085 PF01228 Glycine radical IF561_27115 PF13614 AAA domain IF561_27120 PF00462 Glutaredoxin IF561_27125 PF00216 Bacterial DNA-binding protein IF561_27170 PF00571 CBS domain IF561_27170 PF01595 Cyclin M transmembrane N-terminal domain IF561_27195 PF03747 ADP-ribosylglycohydrolase IF561_27230 PF03741 Integral membrane protein TerC family IF561_27270 PF02146 Sir2 family IF561_27285 PF18090 Centromere-binding protein HTH domain IF561_27285 PF02195 ParB-like nuclease domain IF561_27435 PF00625 Guanylate kinase IF561_27685 PF03477 ATP cone domain IF561_27685 PF13597 Anaerobic ribonucleoside-triphosphate reductase IF561_27925 PF00005 ABC transporter IF561_28085 PF05360 yiaA/B two helix domain IF561_28215 PF02743 Cache domain IF561_28215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IF561_28215 PF00672 HAMP domain IF561_28265 PF03952 Enolase, N-terminal domain IF561_28265 PF00113 Enolase, C-terminal TIM barrel domain IF561_28440 PF00436 Single-strand binding protein family IF561_28475 PF01569 PAP2 superfamily IF561_28480 PF01569 PAP2 superfamily IF561_28490 PF00293 NUDIX domain IF561_28535 PF00816 H-NS histone family IF561_28670 PF00293 NUDIX domain IF561_28790 PF01381 Helix-turn-helix IF561_28830 PF13307 Helicase C-terminal domain IF561_28830 PF06733 DEAD_2 IF561_28885 PF00550 Phosphopantetheine attachment site IF561_28895 PF06463 Molybdenum Cofactor Synthesis C IF561_28895 PF04055 Radical SAM superfamily IF561_28900 PF00009 Elongation factor Tu GTP binding domain IF561_28900 PF03144 Elongation factor Tu domain 2 IF561_28900 PF03143 Elongation factor Tu C-terminal domain IF561_28965 PF00672 HAMP domain IF561_28965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IF561_28965 PF12729 Four helix bundle sensory module for signal transduction IF561_28970 PF02631 RecX family IF561_29100 PF07804 HipA-like C-terminal domain IF561_29100 PF13657 HipA N-terminal domain IF561_29115 PF00437 Type II/IV secretion system protein IF561_29115 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain IF561_29195 PF01661 Macro domain IF561_29455 PF08534 Redoxin IF561_29455 PF00462 Glutaredoxin