locus-tag class description VPBB_0001 PF00258 Flavodoxin VPBB_0002 PF01926 50S ribosome-binding GTPase VPBB_0002 PF10396 GTP-binding protein TrmE N-terminus VPBB_0002 PF12631 MnmE helical domain VPBB_0003 PF02096 60Kd inner membrane protein VPBB_0003 PF14849 YidC periplasmic domain VPBB_0004 PF00825 Ribonuclease P VPBB_0005 PF00468 Ribosomal protein L34 VPBB_0006 PF00005 ABC transporter VPBB_0007 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_0008 PF00497 Bacterial extracellular solute-binding proteins, family 3 VPBB_0010 PF08299 Bacterial dnaA protein helix-turn-helix VPBB_0010 PF00308 Bacterial dnaA protein VPBB_0010 PF11638 DnaA N-terminal domain VPBB_0011 PF00712 DNA polymerase III beta subunit, N-terminal domain VPBB_0011 PF02768 DNA polymerase III beta subunit, C-terminal domain VPBB_0011 PF02767 DNA polymerase III beta subunit, central domain VPBB_0012 PF02463 RecF/RecN/SMC N terminal domain VPBB_0013 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_0013 PF00204 DNA gyrase B VPBB_0013 PF00986 DNA gyrase B subunit, carboxyl terminus VPBB_0013 PF18053 DNA gyrase B subunit insert domain VPBB_0013 PF01751 Toprim domain VPBB_0016 PF00011 Hsp20/alpha crystallin family VPBB_0017 PF00155 Aminotransferase class I and II VPBB_0018 PF00128 Alpha amylase, catalytic domain VPBB_0019 PF02092 Glycyl-tRNA synthetase beta subunit VPBB_0019 PF05746 DALR anticodon binding domain VPBB_0020 PF02091 Glycyl-tRNA synthetase alpha subunit VPBB_0021 PF01169 Uncharacterized protein family UPF0016 VPBB_0024 PF01206 Sulfurtransferase TusA VPBB_0026 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_0026 PF03466 LysR substrate binding domain VPBB_0027 PF00107 Zinc-binding dehydrogenase VPBB_0027 PF08240 Alcohol dehydrogenase GroES-like domain VPBB_0028 PF02803 Thiolase, C-terminal domain VPBB_0028 PF00108 Thiolase, N-terminal domain VPBB_0029 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VPBB_0029 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VPBB_0029 PF00378 Enoyl-CoA hydratase/isomerase VPBB_0030 PF01205 Uncharacterized protein family UPF0029 VPBB_0030 PF09186 Domain of unknown function (DUF1949) VPBB_0031 PF02386 Cation transport protein VPBB_0032 PF12724 Flavodoxin domain VPBB_0034 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_0034 PF03466 LysR substrate binding domain VPBB_0035 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain VPBB_0035 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain VPBB_0036 PF04380 Membrane fusogenic activity VPBB_0037 PF00873 AcrB/AcrD/AcrF family VPBB_0038 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VPBB_0039 PF00440 Bacterial regulatory proteins, tetR family VPBB_0039 PF16295 Tetracyclin repressor-like, C-terminal domain VPBB_0040 PF00580 UvrD/REP helicase N-terminal domain VPBB_0040 PF13361 UvrD-like helicase C-terminal domain VPBB_0041 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VPBB_0042 PF13419 Haloacid dehalogenase-like hydrolase VPBB_0043 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VPBB_0043 PF00005 ABC transporter VPBB_0044 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VPBB_0046 PF12911 N-terminal TM domain of oligopeptide transport permease C VPBB_0046 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_0052 PF00069 Protein kinase domain VPBB_0053 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VPBB_0053 PF00356 Bacterial regulatory proteins, lacI family VPBB_0054 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_0054 PF03466 LysR substrate binding domain VPBB_0055 PF00893 Small Multidrug Resistance protein VPBB_0056 PF00893 Small Multidrug Resistance protein VPBB_0057 PF00920 Dehydratase family VPBB_0058 PF01202 Shikimate kinase VPBB_0059 PF02447 GntP family permease VPBB_0060 PF01081 KDPG and KHG aldolase VPBB_0061 PF01048 Phosphorylase superfamily VPBB_0062 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_0062 PF03466 LysR substrate binding domain VPBB_0063 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VPBB_0063 PF07992 Pyridine nucleotide-disulphide oxidoreductase VPBB_0064 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ VPBB_0065 PF01432 Peptidase family M3 VPBB_0066 PF01037 Lrp/AsnC ligand binding domain VPBB_0068 PF04445 Putative SAM-dependent methyltransferase VPBB_0070 PF00892 EamA-like transporter family VPBB_0071 PF00582 Universal stress protein family VPBB_0072 PF00210 Ferritin-like domain VPBB_0073 PF10625 Universal stress protein B (UspB) VPBB_0075 PF00158 Sigma-54 interaction domain VPBB_0075 PF02954 Bacterial regulatory protein, Fis family VPBB_0075 PF01590 GAF domain VPBB_0076 PF04972 BON domain VPBB_0079 PF00781 Diacylglycerol kinase catalytic domain VPBB_0086 PF01594 AI-2E family transporter VPBB_0087 PF00563 EAL domain VPBB_0087 PF00990 Diguanylate cyclase, GGDEF domain VPBB_0087 PF03707 Bacterial signalling protein N terminal repeat VPBB_0089 PF02646 RmuC family VPBB_0090 PF01209 ubiE/COQ5 methyltransferase family VPBB_0091 PF02036 SCP-2 sterol transfer family VPBB_0092 PF03109 ABC1 family VPBB_0093 PF02416 mttA/Hcf106 family VPBB_0094 PF02416 mttA/Hcf106 family VPBB_0095 PF00902 Sec-independent protein translocase protein (TatC) VPBB_0096 PF01026 TatD related DNase VPBB_0097 PF00490 Delta-aminolevulinic acid dehydratase VPBB_0099 PF01367 5'-3' exonuclease, C-terminal SAM fold VPBB_0099 PF01612 3'-5' exonuclease VPBB_0099 PF00476 DNA polymerase family A VPBB_0099 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VPBB_0100 PF01926 50S ribosome-binding GTPase VPBB_0101 PF00034 Cytochrome c VPBB_0103 PF04220 Der GTPase activator (YihI) VPBB_0104 PF10675 Protein of unknown function (DUF2489) VPBB_0105 PF06969 HemN C-terminal domain VPBB_0105 PF04055 Radical SAM superfamily VPBB_0106 PF00962 Adenosine/AMP deaminase VPBB_0107 PF03707 Bacterial signalling protein N terminal repeat VPBB_0107 PF00563 EAL domain VPBB_0107 PF00990 Diguanylate cyclase, GGDEF domain VPBB_0108 PF02954 Bacterial regulatory protein, Fis family VPBB_0108 PF00072 Response regulator receiver domain VPBB_0108 PF00158 Sigma-54 interaction domain VPBB_0109 PF00512 His Kinase A (phospho-acceptor) domain VPBB_0109 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_0109 PF00989 PAS fold VPBB_0111 PF00120 Glutamine synthetase, catalytic domain VPBB_0111 PF03951 Glutamine synthetase, beta-Grasp domain VPBB_0115 PF03631 Virulence factor BrkB VPBB_0116 PF02580 D-Tyr-tRNA(Tyr) deacylase VPBB_0117 PF00583 Acetyltransferase (GNAT) family VPBB_0117 PF09500 Putative thioesterase (yiiD_Cterm) VPBB_0119 PF01293 Phosphoenolpyruvate carboxykinase VPBB_0120 PF01430 Hsp33 protein VPBB_0121 PF01479 S4 domain VPBB_0122 PF11356 Type II secretion system protein C VPBB_0123 PF03958 Bacterial type II/III secretion system short domain VPBB_0123 PF00263 Bacterial type II and III secretion system protein VPBB_0124 PF00437 Type II/IV secretion system protein VPBB_0125 PF00482 Type II secretion system (T2SS), protein F VPBB_0126 PF08334 Type II secretion system (T2SS), protein G VPBB_0126 PF07963 Prokaryotic N-terminal methylation motif VPBB_0127 PF12019 Type II transport protein GspH VPBB_0128 PF02501 Type II secretion system (T2SS), protein I VPBB_0128 PF07963 Prokaryotic N-terminal methylation motif VPBB_0129 PF11612 Type II secretion system (T2SS), protein J VPBB_0129 PF07963 Prokaryotic N-terminal methylation motif VPBB_0130 PF03934 Type II secretion system (T2SS), protein K VPBB_0131 PF05134 Type II secretion system (T2SS), protein L VPBB_0131 PF12693 GspL periplasmic domain VPBB_0132 PF04612 Type II secretion system (T2SS), protein M VPBB_0133 PF01203 Type II secretion system (T2SS), protein N VPBB_0134 PF00459 Inositol monophosphatase family VPBB_0135 PF00293 NUDIX domain VPBB_0136 PF01106 NifU-like domain VPBB_0136 PF01521 Iron-sulphur cluster biosynthesis VPBB_0137 PF00156 Phosphoribosyl transferase domain VPBB_0138 PF00561 alpha/beta hydrolase fold VPBB_0140 PF00575 S1 RNA binding domain VPBB_0140 PF16921 Tex protein YqgF-like domain VPBB_0140 PF17674 HHH domain VPBB_0140 PF09371 Tex-like protein N-terminal domain VPBB_0142 PF01272 Transcription elongation factor, GreA/GreB, C-term VPBB_0142 PF03449 Transcription elongation factor, N-terminal VPBB_0144 PF00072 Response regulator receiver domain VPBB_0144 PF00486 Transcriptional regulatory protein, C terminal VPBB_0145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_0145 PF00512 His Kinase A (phospho-acceptor) domain VPBB_0145 PF00672 HAMP domain VPBB_0146 PF00860 Permease family VPBB_0148 PF00270 DEAD/DEAH box helicase VPBB_0148 PF00271 Helicase conserved C-terminal domain VPBB_0148 PF17191 RecG wedge domain VPBB_0149 PF00588 SpoU rRNA Methylase family VPBB_0149 PF12105 SpoU, rRNA methylase, C-terminal VPBB_0150 PF04607 Region found in RelA / SpoT proteins VPBB_0150 PF13291 ACT domain VPBB_0150 PF02824 TGS domain VPBB_0151 PF01192 RNA polymerase Rpb6 VPBB_0152 PF00625 Guanylate kinase VPBB_0155 PF02472 Biopolymer transport protein ExbD/TolR VPBB_0156 PF01618 MotA/TolQ/ExbB proton channel family VPBB_0159 PF07715 TonB-dependent Receptor Plug Domain VPBB_0159 PF00593 TonB dependent receptor VPBB_0160 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_0161 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_0161 PF12911 N-terminal TM domain of oligopeptide transport permease C VPBB_0162 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VPBB_0172 PF00075 RNase H VPBB_0180 PF04002 RadC-like JAB domain VPBB_0181 PF00145 C-5 cytosine-specific DNA methylase VPBB_0184 PF08340 Domain of unknown function (DUF1732) VPBB_0184 PF03755 YicC-like family, N-terminal region VPBB_0185 PF03725 3' exoribonuclease family, domain 2 VPBB_0185 PF01138 3' exoribonuclease family, domain 1 VPBB_0186 PF00156 Phosphoribosyl transferase domain VPBB_0187 PF03279 Bacterial lipid A biosynthesis acyltransferase VPBB_0188 PF00440 Bacterial regulatory proteins, tetR family VPBB_0189 PF02441 Flavoprotein VPBB_0189 PF04127 DNA / pantothenate metabolism flavoprotein VPBB_0190 PF17200 Single Cache domain 2 VPBB_0190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_0190 PF00672 HAMP domain VPBB_0191 PF04002 RadC-like JAB domain VPBB_0192 PF00830 Ribosomal L28 family VPBB_0193 PF00471 Ribosomal protein L33 VPBB_0194 PF00884 Sulfatase VPBB_0196 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain VPBB_0196 PF06827 Zinc finger found in FPG and IleRS VPBB_0196 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain VPBB_0197 PF01467 Cytidylyltransferase-like VPBB_0198 PF05686 Glycosyl transferase family 90 VPBB_0199 PF00535 Glycosyl transferase family 2 VPBB_0200 PF00535 Glycosyl transferase family 2 VPBB_0201 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VPBB_0202 PF01219 Prokaryotic diacylglycerol kinase VPBB_0204 PF16363 GDP-mannose 4,6 dehydratase VPBB_0205 PF00483 Nucleotidyl transferase VPBB_0206 PF05523 WxcM-like, C-terminal VPBB_0208 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VPBB_0212 PF01040 UbiA prenyltransferase family VPBB_0214 PF01565 FAD binding domain VPBB_0214 PF04030 D-arabinono-1,4-lactone oxidase VPBB_0217 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VPBB_0218 PF01531 Glycosyl transferase family 11 VPBB_0219 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VPBB_0221 PF03279 Bacterial lipid A biosynthesis acyltransferase VPBB_0222 PF01370 NAD dependent epimerase/dehydratase family VPBB_0223 PF06082 Exopolysaccharide biosynthesis protein YbjH VPBB_0230 PF02350 UDP-N-acetylglucosamine 2-epimerase VPBB_0231 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VPBB_0231 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VPBB_0231 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VPBB_0234 PF00534 Glycosyl transferases group 1 VPBB_0234 PF13579 Glycosyl transferase 4-like domain VPBB_0235 PF00534 Glycosyl transferases group 1 VPBB_0235 PF13439 Glycosyltransferase Family 4 VPBB_0238 PF16363 GDP-mannose 4,6 dehydratase VPBB_0239 PF01370 NAD dependent epimerase/dehydratase family VPBB_0240 PF00293 NUDIX domain VPBB_0241 PF01050 Mannose-6-phosphate isomerase VPBB_0241 PF00483 Nucleotidyl transferase VPBB_0242 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VPBB_0242 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VPBB_0242 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VPBB_0242 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VPBB_0243 PF01238 Phosphomannose isomerase type I VPBB_0244 PF00535 Glycosyl transferase family 2 VPBB_0247 PF02719 Polysaccharide biosynthesis protein VPBB_0248 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VPBB_0248 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VPBB_0248 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VPBB_0249 PF00483 Nucleotidyl transferase VPBB_0251 PF00121 Triosephosphate isomerase VPBB_0257 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded VPBB_0260 PF06005 Cell division protein ZapB VPBB_0261 PF03737 Aldolase/RraA VPBB_0262 PF01040 UbiA prenyltransferase family VPBB_0263 PF00004 ATPase family associated with various cellular activities (AAA) VPBB_0263 PF07724 AAA domain (Cdc48 subfamily) VPBB_0264 PF00227 Proteasome subunit VPBB_0266 PF00356 Bacterial regulatory proteins, lacI family VPBB_0267 PF18319 PriA DNA helicase Cys-rich region (CRR) domain VPBB_0267 PF17764 3′ DNA-binding domain (3′BD) VPBB_0267 PF00270 DEAD/DEAH box helicase VPBB_0267 PF00271 Helicase conserved C-terminal domain VPBB_0267 PF18074 Primosomal protein N C-terminal domain VPBB_0268 PF01197 Ribosomal protein L31 VPBB_0269 PF00338 Ribosomal protein S10p/S20e VPBB_0270 PF00297 Ribosomal protein L3 VPBB_0271 PF00573 Ribosomal protein L4/L1 family VPBB_0272 PF00276 Ribosomal protein L23 VPBB_0273 PF03947 Ribosomal Proteins L2, C-terminal domain VPBB_0273 PF00181 Ribosomal Proteins L2, RNA binding domain VPBB_0274 PF00203 Ribosomal protein S19 VPBB_0275 PF00237 Ribosomal protein L22p/L17e VPBB_0276 PF00189 Ribosomal protein S3, C-terminal domain VPBB_0276 PF07650 KH domain VPBB_0277 PF00252 Ribosomal protein L16p/L10e VPBB_0278 PF00831 Ribosomal L29 protein VPBB_0279 PF00366 Ribosomal protein S17 VPBB_0280 PF00238 Ribosomal protein L14p/L23e VPBB_0281 PF00467 KOW motif VPBB_0281 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 VPBB_0282 PF00673 ribosomal L5P family C-terminus VPBB_0282 PF00281 Ribosomal protein L5 VPBB_0283 PF00253 Ribosomal protein S14p/S29e VPBB_0284 PF00410 Ribosomal protein S8 VPBB_0285 PF00347 Ribosomal protein L6 VPBB_0286 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast VPBB_0287 PF03719 Ribosomal protein S5, C-terminal domain VPBB_0287 PF00333 Ribosomal protein S5, N-terminal domain VPBB_0288 PF00327 Ribosomal protein L30p/L7e VPBB_0289 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A VPBB_0290 PF00344 SecY translocase VPBB_0291 PF00444 Ribosomal protein L36 VPBB_0292 PF00416 Ribosomal protein S13/S18 VPBB_0293 PF00411 Ribosomal protein S11 VPBB_0294 PF01479 S4 domain VPBB_0294 PF00163 Ribosomal protein S4/S9 N-terminal domain VPBB_0295 PF01000 RNA polymerase Rpb3/RpoA insert domain VPBB_0295 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain VPBB_0295 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain VPBB_0296 PF01196 Ribosomal protein L17 VPBB_0298 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VPBB_0298 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VPBB_0300 PF13673 Acetyltransferase (GNAT) domain VPBB_0301 PF00270 DEAD/DEAH box helicase VPBB_0301 PF00271 Helicase conserved C-terminal domain VPBB_0301 PF03880 DbpA RNA binding domain VPBB_0303 PF00149 Calcineurin-like phosphoesterase VPBB_0303 PF02872 5'-nucleotidase, C-terminal domain VPBB_0304 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VPBB_0304 PF14824 Sirohaem biosynthesis protein central VPBB_0304 PF10414 Sirohaem synthase dimerisation region VPBB_0305 PF01507 Phosphoadenosine phosphosulfate reductase family VPBB_0306 PF00009 Elongation factor Tu GTP binding domain VPBB_0307 PF02080 TrkA-C domain VPBB_0307 PF03600 Citrate transporter VPBB_0312 PF00005 ABC transporter VPBB_0315 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VPBB_0316 PF06526 Protein of unknown function (DUF1107) VPBB_0317 PF01625 Peptide methionine sulfoxide reductase VPBB_0318 PF17243 POTRA domain TamA domain 1 VPBB_0318 PF01103 Surface antigen VPBB_0319 PF04357 TamB, inner membrane protein subunit of TAM complex VPBB_0320 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like VPBB_0322 PF00719 Inorganic pyrophosphatase VPBB_0323 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain VPBB_0324 PF08245 Mur ligase middle domain VPBB_0324 PF01225 Mur ligase family, catalytic domain VPBB_0324 PF02875 Mur ligase family, glutamate ligase domain VPBB_0325 PF02441 Flavoprotein VPBB_0327 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_0328 PF00005 ABC transporter VPBB_0332 PF16868 NMT1-like family VPBB_0333 PF01316 Arginine repressor, DNA binding domain VPBB_0333 PF02863 Arginine repressor, C-terminal domain VPBB_0334 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VPBB_0334 PF00056 lactate/malate dehydrogenase, NAD binding domain VPBB_0336 PF00348 Polyprenyl synthetase VPBB_0337 PF00829 Ribosomal prokaryotic L21 protein VPBB_0338 PF01016 Ribosomal L27 protein VPBB_0339 PF01018 GTP1/OBG VPBB_0339 PF01926 50S ribosome-binding GTPase VPBB_0340 PF06738 Putative threonine/serine exporter VPBB_0341 PF12821 Threonine/Serine exporter, ThrE VPBB_0342 PF00186 Dihydrofolate reductase VPBB_0343 PF00149 Calcineurin-like phosphoesterase VPBB_0344 PF04379 ApaG domain VPBB_0345 PF00398 Ribosomal RNA adenine dimethylase VPBB_0346 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VPBB_0347 PF09312 SurA N-terminal domain VPBB_0348 PF04453 LPS transport system D VPBB_0348 PF03968 OstA-like protein VPBB_0349 PF05099 Tellurite resistance protein TerB VPBB_0349 PF00226 DnaJ domain VPBB_0351 PF00694 Aconitase C-terminal domain VPBB_0352 PF00330 Aconitase family (aconitate hydratase) VPBB_0353 PF00180 Isocitrate/isopropylmalate dehydrogenase VPBB_0354 PF08502 LeuA allosteric (dimerisation) domain VPBB_0354 PF00682 HMGL-like VPBB_0356 PF01569 PAP2 superfamily VPBB_0358 PF03466 LysR substrate binding domain VPBB_0358 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_0359 PF00501 AMP-binding enzyme VPBB_0360 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VPBB_0360 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VPBB_0360 PF00205 Thiamine pyrophosphate enzyme, central domain VPBB_0361 PF10369 Small subunit of acetolactate synthase VPBB_0362 PF07694 5TMR of 5TMR-LYT VPBB_0362 PF00990 Diguanylate cyclase, GGDEF domain VPBB_0364 PF00224 Pyruvate kinase, barrel domain VPBB_0364 PF02887 Pyruvate kinase, alpha/beta domain VPBB_0365 PF00455 DeoR C terminal sensor domain VPBB_0365 PF08220 DeoR-like helix-turn-helix domain VPBB_0366 PF01380 SIS domain VPBB_0368 PF00072 Response regulator receiver domain VPBB_0368 PF00486 Transcriptional regulatory protein, C terminal VPBB_0369 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_0369 PF00672 HAMP domain VPBB_0369 PF00512 His Kinase A (phospho-acceptor) domain VPBB_0370 PF00465 Iron-containing alcohol dehydrogenase VPBB_0371 PF02733 Dak1 domain VPBB_0373 PF02896 PEP-utilising enzyme, TIM barrel domain VPBB_0373 PF00391 PEP-utilising enzyme, mobile domain VPBB_0373 PF05524 PEP-utilising enzyme, N-terminal VPBB_0374 PF00989 PAS fold VPBB_0374 PF00158 Sigma-54 interaction domain VPBB_0374 PF02954 Bacterial regulatory protein, Fis family VPBB_0375 PF05068 Mannitol repressor VPBB_0376 PF01232 Mannitol dehydrogenase Rossmann domain VPBB_0376 PF08125 Mannitol dehydrogenase C-terminal domain VPBB_0377 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VPBB_0377 PF02378 Phosphotransferase system, EIIC VPBB_0377 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VPBB_0384 PF12833 Helix-turn-helix domain VPBB_0386 PF03180 NLPA lipoprotein VPBB_0387 PF04546 Sigma-70, non-essential region VPBB_0387 PF00140 Sigma-70 factor, region 1.2 VPBB_0387 PF03979 Sigma-70 factor, region 1.1 VPBB_0387 PF04542 Sigma-70 region 2 VPBB_0387 PF04539 Sigma-70 region 3 VPBB_0387 PF04545 Sigma-70, region 4 VPBB_0388 PF01807 CHC2 zinc finger VPBB_0388 PF10410 DnaB-helicase binding domain of primase VPBB_0388 PF08275 DNA primase catalytic core, N-terminal domain VPBB_0388 PF08278 DNA primase DnaG DnaB-binding VPBB_0389 PF09424 Yqey-like protein VPBB_0390 PF01165 Ribosomal protein S21 VPBB_0391 PF00814 Glycoprotease family VPBB_0392 PF12697 Alpha/beta hydrolase family VPBB_0393 PF02660 Glycerol-3-phosphate acyltransferase VPBB_0394 PF02152 Dihydroneopterin aldolase VPBB_0395 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VPBB_0396 PF02673 Bacitracin resistance protein BacA VPBB_0397 PF01743 Poly A polymerase head domain VPBB_0397 PF01966 HD domain VPBB_0397 PF12627 Probable RNA and SrmB- binding site of polymerase A VPBB_0398 PF13401 AAA domain VPBB_0398 PF01471 Putative peptidoglycan binding domain VPBB_0400 PF08239 Bacterial SH3 domain VPBB_0401 PF01384 Phosphate transporter family VPBB_0402 PF01865 Protein of unknown function DUF47 VPBB_0403 PF01928 CYTH domain VPBB_0405 PF00672 HAMP domain VPBB_0405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_0406 PF03710 Glutamate-ammonia ligase adenylyltransferase VPBB_0406 PF08335 GlnD PII-uridylyltransferase VPBB_0407 PF00294 pfkB family carbohydrate kinase VPBB_0407 PF01467 Cytidylyltransferase-like VPBB_0408 PF02321 Outer membrane efflux protein VPBB_0409 PF00293 NUDIX domain VPBB_0410 PF06853 Protein of unknown function (DUF1249) VPBB_0411 PF00149 Calcineurin-like phosphoesterase VPBB_0412 PF05728 Uncharacterised protein family (UPF0227) VPBB_0413 PF00986 DNA gyrase B subunit, carboxyl terminus VPBB_0413 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_0413 PF01751 Toprim domain VPBB_0413 PF00204 DNA gyrase B VPBB_0414 PF03989 DNA gyrase C-terminal domain, beta-propeller VPBB_0414 PF00521 DNA gyrase/topoisomerase IV, subunit A VPBB_0415 PF13180 PDZ domain VPBB_0416 PF00595 PDZ domain VPBB_0418 PF06295 Protein of unknown function (DUF1043) VPBB_0419 PF03969 AFG1-like ATPase VPBB_0420 PF00572 Ribosomal protein L13 VPBB_0421 PF00380 Ribosomal protein S9/S16 VPBB_0422 PF00355 Rieske [2Fe-2S] domain VPBB_0422 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal VPBB_0423 PF00033 Cytochrome b/b6/petB VPBB_0423 PF00032 Cytochrome b(C-terminal)/b6/petD VPBB_0424 PF02167 Cytochrome C1 family VPBB_0425 PF00043 Glutathione S-transferase, C-terminal domain VPBB_0425 PF02798 Glutathione S-transferase, N-terminal domain VPBB_0426 PF04386 Stringent starvation protein B VPBB_0427 PF04972 BON domain VPBB_0428 PF13580 SIS domain VPBB_0430 PF04348 LppC putative lipoprotein VPBB_0431 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VPBB_0432 PF01795 MraW methylase family VPBB_0433 PF04999 Cell division protein FtsL VPBB_0434 PF03717 Penicillin-binding Protein dimerisation domain VPBB_0434 PF00905 Penicillin binding protein transpeptidase domain VPBB_0435 PF02875 Mur ligase family, glutamate ligase domain VPBB_0435 PF01225 Mur ligase family, catalytic domain VPBB_0435 PF08245 Mur ligase middle domain VPBB_0436 PF08245 Mur ligase middle domain VPBB_0436 PF02875 Mur ligase family, glutamate ligase domain VPBB_0436 PF01225 Mur ligase family, catalytic domain VPBB_0437 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 VPBB_0437 PF00953 Glycosyl transferase family 4 VPBB_0438 PF02875 Mur ligase family, glutamate ligase domain VPBB_0438 PF08245 Mur ligase middle domain VPBB_0439 PF01098 Cell cycle protein VPBB_0440 PF04101 Glycosyltransferase family 28 C-terminal domain VPBB_0440 PF03033 Glycosyltransferase family 28 N-terminal domain VPBB_0441 PF08245 Mur ligase middle domain VPBB_0441 PF01225 Mur ligase family, catalytic domain VPBB_0441 PF02875 Mur ligase family, glutamate ligase domain VPBB_0442 PF08478 POTRA domain, FtsQ-type VPBB_0442 PF03799 Cell division protein FtsQ VPBB_0443 PF02491 SHS2 domain inserted in FTSA VPBB_0444 PF00091 Tubulin/FtsZ family, GTPase domain VPBB_0444 PF12327 FtsZ family, C-terminal domain VPBB_0445 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase VPBB_0447 PF02810 SEC-C motif VPBB_0447 PF07516 SecA Wing and Scaffold domain VPBB_0447 PF07517 SecA DEAD-like domain VPBB_0447 PF01043 SecA preprotein cross-linking domain VPBB_0448 PF00293 NUDIX domain VPBB_0449 PF01113 Dihydrodipicolinate reductase, N-terminus VPBB_0449 PF05173 Dihydrodipicolinate reductase, C-terminus VPBB_0450 PF00117 Glutamine amidotransferase class-I VPBB_0450 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VPBB_0451 PF02142 MGS-like domain VPBB_0451 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VPBB_0451 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VPBB_0454 PF01925 Sulfite exporter TauE/SafE VPBB_0455 PF03458 UPF0126 domain VPBB_0456 PF01497 Periplasmic binding protein VPBB_0457 PF03186 CobD/Cbib protein VPBB_0457 PF17113 Regulatory signalling modulator protein AmpE VPBB_0458 PF01048 Phosphorylase superfamily VPBB_0460 PF07992 Pyridine nucleotide-disulphide oxidoreductase VPBB_0460 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VPBB_0461 PF00310 Glutamine amidotransferases class-II VPBB_0461 PF01493 GXGXG motif VPBB_0461 PF01645 Conserved region in glutamate synthase VPBB_0461 PF04898 Glutamate synthase central domain VPBB_0462 PF07992 Pyridine nucleotide-disulphide oxidoreductase VPBB_0462 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VPBB_0463 PF00310 Glutamine amidotransferases class-II VPBB_0463 PF04898 Glutamate synthase central domain VPBB_0463 PF01645 Conserved region in glutamate synthase VPBB_0463 PF01493 GXGXG motif VPBB_0464 PF04055 Radical SAM superfamily VPBB_0464 PF16199 Radical_SAM C-terminal domain VPBB_0465 PF00563 EAL domain VPBB_0465 PF01590 GAF domain VPBB_0465 PF00360 Phytochrome region VPBB_0465 PF00990 Diguanylate cyclase, GGDEF domain VPBB_0466 PF00072 Response regulator receiver domain VPBB_0466 PF18415 Histidine kinase receptor ArcB trans-membrane domain VPBB_0466 PF00512 His Kinase A (phospho-acceptor) domain VPBB_0466 PF00989 PAS fold VPBB_0466 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_0466 PF01627 Hpt domain VPBB_0468 PF00072 Response regulator receiver domain VPBB_0468 PF00486 Transcriptional regulatory protein, C terminal VPBB_0472 PF00742 Homoserine dehydrogenase VPBB_0472 PF01842 ACT domain VPBB_0472 PF00696 Amino acid kinase family VPBB_0472 PF13840 ACT domain VPBB_0472 PF03447 Homoserine dehydrogenase, NAD binding domain VPBB_0473 PF08544 GHMP kinases C terminal VPBB_0473 PF00288 GHMP kinases N terminal domain VPBB_0474 PF00291 Pyridoxal-phosphate dependent enzyme VPBB_0474 PF14821 Threonine synthase N terminus VPBB_0475 PF01228 Glycine radical VPBB_0476 PF01261 Xylose isomerase-like TIM barrel VPBB_0477 PF03167 Uracil DNA glycosylase superfamily VPBB_0480 PF01235 Sodium:alanine symporter family VPBB_0481 PF03883 Peroxide stress protein YaaA VPBB_0483 PF05175 Methyltransferase small domain VPBB_0484 PF05525 Branched-chain amino acid transport protein VPBB_0485 PF00258 Flavodoxin VPBB_0486 PF02899 Phage integrase, N-terminal SAM-like domain VPBB_0486 PF00589 Phage integrase family VPBB_0487 PF13098 Thioredoxin-like domain VPBB_0487 PF10411 Disulfide bond isomerase protein N-terminus VPBB_0488 PF17768 RecJ OB domain VPBB_0488 PF01368 DHH family VPBB_0488 PF02272 DHHA1 domain VPBB_0490 PF00152 tRNA synthetases class II (D, K and N) VPBB_0490 PF01336 OB-fold nucleic acid binding domain VPBB_0491 PF00158 Sigma-54 interaction domain VPBB_0491 PF00072 Response regulator receiver domain VPBB_0491 PF02954 Bacterial regulatory protein, Fis family VPBB_0493 PF00248 Aldo/keto reductase family VPBB_0495 PF02976 DNA mismatch repair enzyme MutH VPBB_0496 PF00293 NUDIX domain VPBB_0497 PF02896 PEP-utilising enzyme, TIM barrel domain VPBB_0497 PF00391 PEP-utilising enzyme, mobile domain VPBB_0497 PF05524 PEP-utilising enzyme, N-terminal VPBB_0497 PF01590 GAF domain VPBB_0498 PF01925 Sulfite exporter TauE/SafE VPBB_0499 PF01790 Prolipoprotein diacylglyceryl transferase VPBB_0500 PF00303 Thymidylate synthase VPBB_0503 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_0503 PF03466 LysR substrate binding domain VPBB_0504 PF01022 Bacterial regulatory protein, arsR family VPBB_0505 PF01649 Ribosomal protein S20 VPBB_0506 PF03023 Lipid II flippase MurJ VPBB_0507 PF01687 Riboflavin kinase VPBB_0507 PF06574 FAD synthetase VPBB_0508 PF08264 Anticodon-binding domain of tRNA VPBB_0508 PF00133 tRNA synthetases class I (I, L, M and V) VPBB_0508 PF06827 Zinc finger found in FPG and IleRS VPBB_0509 PF01252 Signal peptidase (SPase) II VPBB_0511 PF02401 LytB protein VPBB_0512 PF00072 Response regulator receiver domain VPBB_0512 PF04397 LytTr DNA-binding domain VPBB_0513 PF07694 5TMR of 5TMR-LYT VPBB_0513 PF06580 Histidine kinase VPBB_0514 PF02554 Carbon starvation protein CstA VPBB_0517 PF13580 SIS domain VPBB_0518 PF03702 Anhydro-N-acetylmuramic acid kinase VPBB_0520 PF00793 DAHP synthetase I family VPBB_0521 PF02153 Prephenate dehydrogenase VPBB_0521 PF01817 Chorismate mutase type II VPBB_0522 PF04225 Opacity-associated protein A LysM-like domain VPBB_0522 PF01551 Peptidase family M23 VPBB_0523 PF07238 PilZ domain VPBB_0524 PF12848 ABC transporter VPBB_0524 PF00005 ABC transporter VPBB_0525 PF14718 Soluble lytic murein transglycosylase L domain VPBB_0525 PF01464 Transglycosylase SLT domain VPBB_0526 PF01371 Trp repressor protein VPBB_0527 PF01931 Protein of unknown function DUF84 VPBB_0528 PF00800 Prephenate dehydratase VPBB_0528 PF01817 Chorismate mutase type II VPBB_0529 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VPBB_0530 PF01464 Transglycosylase SLT domain VPBB_0531 PF13525 Outer membrane lipoprotein VPBB_0532 PF00849 RNA pseudouridylate synthase VPBB_0532 PF01479 S4 domain VPBB_0534 PF17871 AAA lid domain VPBB_0534 PF07724 AAA domain (Cdc48 subfamily) VPBB_0534 PF10431 C-terminal, D2-small domain, of ClpB protein VPBB_0534 PF02861 Clp amino terminal domain, pathogenicity island component VPBB_0534 PF00004 ATPase family associated with various cellular activities (AAA) VPBB_0538 PF03411 Penicillin-insensitive murein endopeptidase VPBB_0540 PF00037 4Fe-4S binding domain VPBB_0542 PF04381 Putative exonuclease, RdgC VPBB_0543 PF00072 Response regulator receiver domain VPBB_0543 PF00486 Transcriptional regulatory protein, C terminal VPBB_0544 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_0544 PF00989 PAS fold VPBB_0544 PF11808 Phosphate regulon sensor protein PhoR VPBB_0544 PF00512 His Kinase A (phospho-acceptor) domain VPBB_0545 PF12849 PBP superfamily domain VPBB_0546 PF02541 Ppx/GppA phosphatase family VPBB_0547 PF17941 Polyphosphate kinase C-terminal domain 1 VPBB_0547 PF02503 Polyphosphate kinase middle domain VPBB_0547 PF13090 Polyphosphate kinase C-terminal domain 2 VPBB_0547 PF13089 Polyphosphate kinase N-terminal domain VPBB_0548 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_0549 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_0550 PF00005 ABC transporter VPBB_0551 PF01895 PhoU domain VPBB_0552 PF03976 Polyphosphate kinase 2 (PPK2) VPBB_0553 PF03932 CutC family VPBB_0554 PF00578 AhpC/TSA family VPBB_0554 PF10417 C-terminal domain of 1-Cys peroxiredoxin VPBB_0555 PF03466 LysR substrate binding domain VPBB_0555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_0556 PF01274 Malate synthase VPBB_0557 PF00463 Isocitrate lyase family VPBB_0558 PF00571 CBS domain VPBB_0560 PF02547 Queuosine biosynthesis protein VPBB_0561 PF01702 Queuine tRNA-ribosyltransferase VPBB_0562 PF02699 Preprotein translocase subunit VPBB_0563 PF07549 SecD/SecF GG Motif VPBB_0563 PF02355 Protein export membrane protein VPBB_0563 PF13721 SecD export protein N-terminal TM region VPBB_0564 PF07549 SecD/SecF GG Motif VPBB_0564 PF02355 Protein export membrane protein VPBB_0565 PF00459 Inositol monophosphatase family VPBB_0566 PF00588 SpoU rRNA Methylase family VPBB_0567 PF02082 Transcriptional regulator VPBB_0568 PF00266 Aminotransferase class-V VPBB_0569 PF01592 NifU-like N terminal domain VPBB_0570 PF01521 Iron-sulphur cluster biosynthesis VPBB_0571 PF07743 HSCB C-terminal oligomerisation domain VPBB_0571 PF00226 DnaJ domain VPBB_0572 PF00012 Hsp70 protein VPBB_0573 PF00111 2Fe-2S iron-sulfur cluster binding domain VPBB_0574 PF04384 Iron-sulphur cluster assembly VPBB_0575 PF12404 Peptidase VPBB_0575 PF00883 Cytosol aminopeptidase family, catalytic domain VPBB_0576 PF00334 Nucleoside diphosphate kinase VPBB_0577 PF04055 Radical SAM superfamily VPBB_0578 PF13464 Domain of unknown function (DUF4115) VPBB_0579 PF04551 GcpE protein VPBB_0580 PF03129 Anticodon binding domain VPBB_0580 PF13393 Histidyl-tRNA synthetase VPBB_0581 PF09976 Tetratricopeptide repeat-like domain VPBB_0582 PF13360 PQQ-like domain VPBB_0583 PF01926 50S ribosome-binding GTPase VPBB_0583 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VPBB_0586 PF02601 Exonuclease VII, large subunit VPBB_0586 PF13742 OB-fold nucleic acid binding domain VPBB_0587 PF00571 CBS domain VPBB_0587 PF00478 IMP dehydrogenase / GMP reductase domain VPBB_0588 PF02540 NAD synthase VPBB_0588 PF00958 GMP synthase C terminal domain VPBB_0588 PF00117 Glutamine amidotransferase class-I VPBB_0589 PF03553 Na+/H+ antiporter family VPBB_0590 PF00704 Glycosyl hydrolases family 18 VPBB_0590 PF06483 Chitinase C VPBB_0591 PF01184 GPR1/FUN34/yaaH family VPBB_0593 PF01235 Sodium:alanine symporter family VPBB_0594 PF01266 FAD dependent oxidoreductase VPBB_0595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_0595 PF03466 LysR substrate binding domain VPBB_0599 PF07969 Amidohydrolase family VPBB_0600 PF01053 Cys/Met metabolism PLP-dependent enzyme VPBB_0601 PF00202 Aminotransferase class-III VPBB_0605 PF00795 Carbon-nitrogen hydrolase VPBB_0605 PF00583 Acetyltransferase (GNAT) family VPBB_0606 PF03466 LysR substrate binding domain VPBB_0606 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_0608 PF01661 Macro domain VPBB_0609 PF02796 Helix-turn-helix domain of resolvase VPBB_0609 PF00239 Resolvase, N terminal domain VPBB_0615 PF01668 SmpB protein VPBB_0616 PF03364 Polyketide cyclase / dehydrase and lipid transport VPBB_0617 PF03658 RnfH family Ubiquitin VPBB_0618 PF04355 SmpA / OmlA family VPBB_0619 PF02463 RecF/RecN/SMC N terminal domain VPBB_0621 PF01513 ATP-NAD kinase VPBB_0622 PF01025 GrpE VPBB_0623 PF00375 Sodium:dicarboxylate symporter family VPBB_0625 PF00012 Hsp70 protein VPBB_0626 PF00226 DnaJ domain VPBB_0626 PF00684 DnaJ central domain VPBB_0626 PF01556 DnaJ C terminal domain VPBB_0627 PF00114 Pilin (bacterial filament) VPBB_0627 PF07963 Prokaryotic N-terminal methylation motif VPBB_0628 PF07963 Prokaryotic N-terminal methylation motif VPBB_0628 PF00114 Pilin (bacterial filament) VPBB_0632 PF03806 AbgT putative transporter family VPBB_0633 PF14437 MafB19-like deaminase VPBB_0635 PF00497 Bacterial extracellular solute-binding proteins, family 3 VPBB_0635 PF01464 Transglycosylase SLT domain VPBB_0636 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain VPBB_0636 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal VPBB_0636 PF02769 AIR synthase related protein, C-terminal domain VPBB_0641 PF07687 Peptidase dimerisation domain VPBB_0641 PF01546 Peptidase family M20/M25/M40 VPBB_0642 PF00860 Permease family VPBB_0643 PF00156 Phosphoribosyl transferase domain VPBB_0645 PF07417 Sigma factor-binding transcriptional regulator Crl VPBB_0646 PF01472 PUA domain VPBB_0646 PF00696 Amino acid kinase family VPBB_0648 PF03477 ATP cone domain VPBB_0649 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VPBB_0649 PF01872 RibD C-terminal domain VPBB_0650 PF00677 Lumazine binding domain VPBB_0651 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VPBB_0651 PF00925 GTP cyclohydrolase II VPBB_0652 PF00885 6,7-dimethyl-8-ribityllumazine synthase VPBB_0653 PF01029 NusB family VPBB_0654 PF02769 AIR synthase related protein, C-terminal domain VPBB_0654 PF00586 AIR synthase related protein, N-terminal domain VPBB_0655 PF04608 Phosphatidylglycerophosphatase A VPBB_0656 PF02780 Transketolase, C-terminal domain VPBB_0656 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VPBB_0656 PF02779 Transketolase, pyrimidine binding domain VPBB_0657 PF00348 Polyprenyl synthetase VPBB_0658 PF02609 Exonuclease VII small subunit VPBB_0659 PF01618 MotA/TolQ/ExbB proton channel family VPBB_0660 PF00691 OmpA family VPBB_0662 PF02568 Thiamine biosynthesis protein (ThiI) VPBB_0662 PF02926 THUMP domain VPBB_0663 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_0663 PF03466 LysR substrate binding domain VPBB_0665 PF04241 Protein of unknown function (DUF423) VPBB_0666 PF01728 FtsJ-like methyltransferase VPBB_0666 PF18125 RlmM ferredoxin-like domain VPBB_0667 PF01223 DNA/RNA non-specific endonuclease VPBB_0669 PF11892 Domain of unknown function (DUF3412) VPBB_0669 PF03641 Possible lysine decarboxylase VPBB_0669 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases VPBB_0670 PF00072 Response regulator receiver domain VPBB_0670 PF00990 Diguanylate cyclase, GGDEF domain VPBB_0672 PF14489 QueF-like protein VPBB_0672 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term VPBB_0673 PF07348 Syd protein (SUKH-2) VPBB_0674 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) VPBB_0675 PF03180 NLPA lipoprotein VPBB_0677 PF00005 ABC transporter VPBB_0677 PF09383 NIL domain VPBB_0680 PF00356 Bacterial regulatory proteins, lacI family VPBB_0681 PF02378 Phosphotransferase system, EIIC VPBB_0681 PF00367 phosphotransferase system, EIIB VPBB_0682 PF00128 Alpha amylase, catalytic domain VPBB_0682 PF16657 Maltogenic Amylase, C-terminal domain VPBB_0686 PF00464 Serine hydroxymethyltransferase VPBB_0687 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family VPBB_0687 PF04055 Radical SAM superfamily VPBB_0688 PF03099 Biotin/lipoate A/B protein ligase family VPBB_0689 PF04359 Protein of unknown function (DUF493) VPBB_0690 PF00768 D-alanyl-D-alanine carboxypeptidase VPBB_0690 PF07943 Penicillin-binding protein 5, C-terminal domain VPBB_0691 PF05036 Sporulation related domain VPBB_0691 PF03330 Lytic transglycolase VPBB_0692 PF01098 Cell cycle protein VPBB_0693 PF03717 Penicillin-binding Protein dimerisation domain VPBB_0693 PF00905 Penicillin binding protein transpeptidase domain VPBB_0694 PF02590 Predicted SPOUT methyltransferase VPBB_0696 PF14840 Processivity clamp loader gamma complex DNA pol III C-term VPBB_0696 PF06144 DNA polymerase III, delta subunit VPBB_0697 PF04390 Lipopolysaccharide-assembly VPBB_0698 PF00133 tRNA synthetases class I (I, L, M and V) VPBB_0698 PF08264 Anticodon-binding domain of tRNA VPBB_0698 PF13603 Leucyl-tRNA synthetase, Domain 2 VPBB_0699 PF07295 Zinc-ribbon containing domain VPBB_0700 PF00795 Carbon-nitrogen hydrolase VPBB_0701 PF03471 Transporter associated domain VPBB_0701 PF00571 CBS domain VPBB_0702 PF02130 Uncharacterized protein family UPF0054 VPBB_0703 PF02562 PhoH-like protein VPBB_0704 PF04055 Radical SAM superfamily VPBB_0704 PF00919 Uncharacterized protein family UPF0004 VPBB_0704 PF01938 TRAM domain VPBB_0705 PF01494 FAD binding domain VPBB_0706 PF06071 Protein of unknown function (DUF933) VPBB_0706 PF01926 50S ribosome-binding GTPase VPBB_0707 PF01195 Peptidyl-tRNA hydrolase VPBB_0708 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VPBB_0708 PF14572 Phosphoribosyl synthetase-associated domain VPBB_0709 PF00288 GHMP kinases N terminal domain VPBB_0709 PF08544 GHMP kinases C terminal VPBB_0710 PF03550 Outer membrane lipoprotein LolB VPBB_0711 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain VPBB_0711 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain VPBB_0711 PF01488 Shikimate / quinate 5-dehydrogenase VPBB_0712 PF03462 PCRF domain VPBB_0712 PF00472 RF-1 domain VPBB_0713 PF17827 PrmC N-terminal domain VPBB_0713 PF13847 Methyltransferase domain VPBB_0714 PF04247 Invasion gene expression up-regulator, SirB VPBB_0715 PF13369 Transglutaminase-like superfamily VPBB_0716 PF00793 DAHP synthetase I family VPBB_0717 PF02872 5'-nucleotidase, C-terminal domain VPBB_0717 PF00149 Calcineurin-like phosphoesterase VPBB_0718 PF04073 Aminoacyl-tRNA editing domain VPBB_0719 PF00849 RNA pseudouridylate synthase VPBB_0719 PF01479 S4 domain VPBB_0720 PF01713 Smr domain VPBB_0723 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VPBB_0723 PF03173 Putative carbohydrate binding domain VPBB_0723 PF02838 Glycosyl hydrolase family 20, domain 2 VPBB_0723 PF00728 Glycosyl hydrolase family 20, catalytic domain VPBB_0726 PF00403 Heavy-metal-associated domain VPBB_0728 PF13609 Gram-negative porin VPBB_0729 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VPBB_0730 PF00749 tRNA synthetases class I (E and Q), catalytic domain VPBB_0731 PF00691 OmpA family VPBB_0731 PF01389 OmpA-like transmembrane domain VPBB_0740 PF00072 Response regulator receiver domain VPBB_0740 PF01584 CheW-like domain VPBB_0741 PF01739 CheR methyltransferase, SAM binding domain VPBB_0741 PF03705 CheR methyltransferase, all-alpha domain VPBB_0742 PF00460 Flagella basal body rod protein VPBB_0743 PF00460 Flagella basal body rod protein VPBB_0743 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VPBB_0744 PF13861 FlgD Tudor-like domain VPBB_0744 PF13860 FlgD Ig-like domain VPBB_0744 PF03963 Flagellar hook capping protein - N-terminal region VPBB_0745 PF07559 Flagellar basal body protein FlaE VPBB_0745 PF00460 Flagella basal body rod protein VPBB_0745 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VPBB_0747 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VPBB_0747 PF00460 Flagella basal body rod protein VPBB_0748 PF00460 Flagella basal body rod protein VPBB_0748 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VPBB_0749 PF02107 Flagellar L-ring protein VPBB_0750 PF02119 Flagellar P-ring protein VPBB_0751 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VPBB_0751 PF10135 Rod binding protein VPBB_0752 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VPBB_0752 PF07196 Flagellin hook IN motif VPBB_0753 PF00669 Bacterial flagellin N-terminal helical region VPBB_0754 PF07196 Flagellin hook IN motif VPBB_0754 PF00700 Bacterial flagellin C-terminal helical region VPBB_0754 PF00669 Bacterial flagellin N-terminal helical region VPBB_0755 PF07196 Flagellin hook IN motif VPBB_0755 PF00669 Bacterial flagellin N-terminal helical region VPBB_0755 PF00700 Bacterial flagellin C-terminal helical region VPBB_0756 PF07196 Flagellin hook IN motif VPBB_0756 PF00669 Bacterial flagellin N-terminal helical region VPBB_0756 PF00700 Bacterial flagellin C-terminal helical region VPBB_0757 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VPBB_0758 PF05524 PEP-utilising enzyme, N-terminal VPBB_0758 PF00391 PEP-utilising enzyme, mobile domain VPBB_0758 PF02896 PEP-utilising enzyme, TIM barrel domain VPBB_0759 PF00381 PTS HPr component phosphorylation site VPBB_0760 PF00291 Pyridoxal-phosphate dependent enzyme VPBB_0762 PF04354 ZipA, C-terminal FtsZ-binding domain VPBB_0763 PF12826 Helix-hairpin-helix motif VPBB_0763 PF00533 BRCA1 C Terminus (BRCT) domain VPBB_0763 PF03119 NAD-dependent DNA ligase C4 zinc finger domain VPBB_0763 PF03120 NAD-dependent DNA ligase OB-fold domain VPBB_0763 PF01653 NAD-dependent DNA ligase adenylation domain VPBB_0764 PF03573 outer membrane porin, OprD family VPBB_0766 PF01145 SPFH domain / Band 7 family VPBB_0766 PF16200 C-terminal region of band_7 VPBB_0767 PF00085 Thioredoxin VPBB_0768 PF00106 short chain dehydrogenase VPBB_0769 PF01370 NAD dependent epimerase/dehydratase family VPBB_0769 PF08338 Domain of unknown function (DUF1731) VPBB_0770 PF07556 Protein of unknown function (DUF1538) VPBB_0771 PF07556 Protein of unknown function (DUF1538) VPBB_0774 PF12850 Calcineurin-like phosphoesterase superfamily domain VPBB_0777 PF17323 Trans-membrane regulatory protein ToxS VPBB_0778 PF00486 Transcriptional regulatory protein, C terminal VPBB_0779 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_0779 PF00183 Hsp90 protein VPBB_0780 PF05191 Adenylate kinase, active site lid VPBB_0782 PF00854 POT family VPBB_0783 PF02357 Transcription termination factor nusG VPBB_0784 PF00733 Asparagine synthase VPBB_0784 PF13537 Glutamine amidotransferase domain VPBB_0785 PF02254 TrkA-N domain VPBB_0785 PF00999 Sodium/hydrogen exchanger family VPBB_0786 PF00480 ROK family VPBB_0786 PF01047 MarR family VPBB_0787 PF01979 Amidohydrolase family VPBB_0788 PF02378 Phosphotransferase system, EIIC VPBB_0788 PF00367 phosphotransferase system, EIIB VPBB_0790 PF01475 Ferric uptake regulator family VPBB_0791 PF02774 Semialdehyde dehydrogenase, dimerisation domain VPBB_0791 PF01118 Semialdehyde dehydrogenase, NAD binding domain VPBB_0792 PF00258 Flavodoxin VPBB_0794 PF12697 Alpha/beta hydrolase family VPBB_0795 PF03925 SeqA protein C-terminal domain VPBB_0795 PF17206 SeqA protein N-terminal domain VPBB_0796 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VPBB_0796 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VPBB_0796 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VPBB_0796 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VPBB_0798 PF01784 NIF3 (NGG1p interacting factor 3) VPBB_0799 PF00285 Citrate synthase, C-terminal domain VPBB_0800 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VPBB_0801 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VPBB_0802 PF02910 Fumarate reductase flavoprotein C-term VPBB_0802 PF00890 FAD binding domain VPBB_0803 PF13085 2Fe-2S iron-sulfur cluster binding domain VPBB_0804 PF00676 Dehydrogenase E1 component VPBB_0804 PF16078 2-oxoglutarate dehydrogenase N-terminus VPBB_0804 PF02779 Transketolase, pyrimidine binding domain VPBB_0804 PF16870 2-oxoglutarate dehydrogenase C-terminal VPBB_0805 PF02817 e3 binding domain VPBB_0805 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VPBB_0805 PF00364 Biotin-requiring enzyme VPBB_0806 PF08442 ATP-grasp domain VPBB_0806 PF00549 CoA-ligase VPBB_0807 PF02629 CoA binding domain VPBB_0807 PF00549 CoA-ligase VPBB_0808 PF00950 ABC 3 transport family VPBB_0809 PF00005 ABC transporter VPBB_0810 PF01297 Zinc-uptake complex component A periplasmic VPBB_0811 PF02311 AraC-like ligand binding domain VPBB_0811 PF12833 Helix-turn-helix domain VPBB_0813 PF07670 Nucleoside recognition VPBB_0813 PF02421 Ferrous iron transport protein B VPBB_0813 PF17910 FeoB cytosolic helical domain VPBB_0813 PF07664 Ferrous iron transport protein B C terminus VPBB_0816 PF03485 Arginyl tRNA synthetase N terminal domain VPBB_0816 PF00750 tRNA synthetases class I (R) VPBB_0816 PF05746 DALR anticodon binding domain VPBB_0817 PF06185 YecM protein VPBB_0818 PF01842 ACT domain VPBB_0818 PF00551 Formyl transferase VPBB_0819 PF04851 Type III restriction enzyme, res subunit VPBB_0819 PF13307 Helicase C-terminal domain VPBB_0820 PF00814 Glycoprotease family VPBB_0823 PF00561 alpha/beta hydrolase fold VPBB_0824 PF13193 AMP-binding enzyme C-terminal domain VPBB_0824 PF00501 AMP-binding enzyme VPBB_0825 PF00570 HRDC domain VPBB_0825 PF01612 3'-5' exonuclease VPBB_0826 PF03776 Septum formation topological specificity factor MinE VPBB_0827 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VPBB_0828 PF03775 Septum formation inhibitor MinC, C-terminal domain VPBB_0828 PF05209 Septum formation inhibitor MinC, N-terminal domain VPBB_0829 PF05166 YcgL domain VPBB_0830 PF13406 Transglycosylase SLT domain VPBB_0831 PF03466 LysR substrate binding domain VPBB_0831 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_0832 PF01773 Na+ dependent nucleoside transporter N-terminus VPBB_0832 PF07662 Na+ dependent nucleoside transporter C-terminus VPBB_0832 PF07670 Nucleoside recognition VPBB_0833 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain VPBB_0833 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain VPBB_0834 PF00239 Resolvase, N terminal domain VPBB_0834 PF02796 Helix-turn-helix domain of resolvase VPBB_0838 PF00005 ABC transporter VPBB_0840 PF00109 Beta-ketoacyl synthase, N-terminal domain VPBB_0840 PF02801 Beta-ketoacyl synthase, C-terminal domain VPBB_0842 PF07977 FabA-like domain VPBB_0843 PF02801 Beta-ketoacyl synthase, C-terminal domain VPBB_0843 PF00109 Beta-ketoacyl synthase, N-terminal domain VPBB_0848 PF00221 Aromatic amino acid lyase VPBB_0849 PF00535 Glycosyl transferase family 2 VPBB_0850 PF07977 FabA-like domain VPBB_0853 PF00550 Phosphopantetheine attachment site VPBB_0854 PF00550 Phosphopantetheine attachment site VPBB_0859 PF04820 Tryptophan halogenase VPBB_0861 PF01595 Cyclin M transmembrane N-terminal domain VPBB_0861 PF03471 Transporter associated domain VPBB_0861 PF00571 CBS domain VPBB_0862 PF00270 DEAD/DEAH box helicase VPBB_0862 PF00271 Helicase conserved C-terminal domain VPBB_0863 PF02080 TrkA-C domain VPBB_0863 PF02254 TrkA-N domain VPBB_0864 PF02386 Cation transport protein VPBB_0867 PF02696 Uncharacterized ACR, YdiU/UPF0061 family VPBB_0868 PF03480 Bacterial extracellular solute-binding protein, family 7 VPBB_0869 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VPBB_0870 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VPBB_0872 PF00158 Sigma-54 interaction domain VPBB_0872 PF00072 Response regulator receiver domain VPBB_0872 PF02954 Bacterial regulatory protein, Fis family VPBB_0873 PF02743 Cache domain VPBB_0873 PF00512 His Kinase A (phospho-acceptor) domain VPBB_0873 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_0874 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VPBB_0874 PF05698 Bacterial trigger factor protein (TF) C-terminus VPBB_0874 PF05697 Bacterial trigger factor protein (TF) VPBB_0875 PF00574 Clp protease VPBB_0876 PF07724 AAA domain (Cdc48 subfamily) VPBB_0876 PF10431 C-terminal, D2-small domain, of ClpB protein VPBB_0876 PF06689 ClpX C4-type zinc finger VPBB_0877 PF00004 ATPase family associated with various cellular activities (AAA) VPBB_0877 PF02190 ATP-dependent protease La (LON) substrate-binding domain VPBB_0877 PF05362 Lon protease (S16) C-terminal proteolytic domain VPBB_0878 PF00216 Bacterial DNA-binding protein VPBB_0879 PF13145 PPIC-type PPIASE domain VPBB_0883 PF01966 HD domain VPBB_0883 PF13286 Phosphohydrolase-associated domain VPBB_0885 PF00155 Aminotransferase class I and II VPBB_0886 PF00425 chorismate binding enzyme VPBB_0887 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VPBB_0887 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VPBB_0887 PF16582 Middle domain of thiamine pyrophosphate VPBB_0888 PF12697 Alpha/beta hydrolase family VPBB_0889 PF00378 Enoyl-CoA hydratase/isomerase VPBB_0890 PF13378 Enolase C-terminal domain-like VPBB_0891 PF13193 AMP-binding enzyme C-terminal domain VPBB_0891 PF00501 AMP-binding enzyme VPBB_0893 PF03601 Conserved hypothetical protein 698 VPBB_0894 PF07690 Major Facilitator Superfamily VPBB_0898 PF13533 Biotin-lipoyl like VPBB_0899 PF00873 AcrB/AcrD/AcrF family VPBB_0903 PF00291 Pyridoxal-phosphate dependent enzyme VPBB_0904 PF01037 Lrp/AsnC ligand binding domain VPBB_0904 PF13404 AsnC-type helix-turn-helix domain VPBB_0907 PF09619 Type III secretion system lipoprotein chaperone (YscW) VPBB_0908 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VPBB_0910 PF00990 Diguanylate cyclase, GGDEF domain VPBB_0910 PF17152 Periplasmic sensor domain VPBB_0911 PF00588 SpoU rRNA Methylase family VPBB_0911 PF08032 RNA 2'-O ribose methyltransferase substrate binding VPBB_0912 PF11953 Domain of unknown function (DUF3470) VPBB_0912 PF00037 4Fe-4S binding domain VPBB_0915 PF00403 Heavy-metal-associated domain VPBB_0916 PF01048 Phosphorylase superfamily VPBB_0918 PF00672 HAMP domain VPBB_0918 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_0922 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VPBB_0922 PF13036 Peptidoglycan-synthase activator LpoB VPBB_0924 PF05728 Uncharacterised protein family (UPF0227) VPBB_0925 PF07992 Pyridine nucleotide-disulphide oxidoreductase VPBB_0928 PF02559 CarD-like/TRCF domain VPBB_0928 PF00270 DEAD/DEAH box helicase VPBB_0928 PF00271 Helicase conserved C-terminal domain VPBB_0928 PF03461 TRCF domain VPBB_0928 PF17757 UvrB interaction domain VPBB_0930 PF02687 FtsX-like permease family VPBB_0930 PF12704 MacB-like periplasmic core domain VPBB_0931 PF00005 ABC transporter VPBB_0932 PF12704 MacB-like periplasmic core domain VPBB_0932 PF02687 FtsX-like permease family VPBB_0934 PF13567 Domain of unknown function (DUF4131) VPBB_0934 PF00753 Metallo-beta-lactamase superfamily VPBB_0934 PF03772 Competence protein VPBB_0935 PF00664 ABC transporter transmembrane region VPBB_0935 PF00005 ABC transporter VPBB_0936 PF02606 Tetraacyldisaccharide-1-P 4'-kinase VPBB_0937 PF03966 Trm112p-like protein VPBB_0938 PF02348 Cytidylyltransferase VPBB_0939 PF04293 SpoVR like protein VPBB_0940 PF04285 Protein of unknown function (DUF444) VPBB_0941 PF08298 PrkA AAA domain VPBB_0941 PF06798 PrkA serine protein kinase C-terminal domain VPBB_0942 PF03887 YfbU domain VPBB_0944 PF04055 Radical SAM superfamily VPBB_0946 PF02901 Pyruvate formate lyase-like VPBB_0946 PF01228 Glycine radical VPBB_0949 PF00005 ABC transporter VPBB_0950 PF00497 Bacterial extracellular solute-binding proteins, family 3 VPBB_0951 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_0952 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_0954 PF03372 Endonuclease/Exonuclease/phosphatase family VPBB_0955 PF10689 Protein of unknown function (DUF2496) VPBB_0956 PF07445 Primosomal replication protein priC VPBB_0957 PF01925 Sulfite exporter TauE/SafE VPBB_0958 PF06733 DEAD_2 VPBB_0958 PF13307 Helicase C-terminal domain VPBB_0960 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VPBB_0961 PF00849 RNA pseudouridylate synthase VPBB_0962 PF03971 Monomeric isocitrate dehydrogenase VPBB_0963 PF00313 'Cold-shock' DNA-binding domain VPBB_0965 PF17871 AAA lid domain VPBB_0965 PF10431 C-terminal, D2-small domain, of ClpB protein VPBB_0965 PF07724 AAA domain (Cdc48 subfamily) VPBB_0965 PF02861 Clp amino terminal domain, pathogenicity island component VPBB_0965 PF00004 ATPase family associated with various cellular activities (AAA) VPBB_0967 PF01176 Translation initiation factor 1A / IF-1 VPBB_0968 PF04377 Arginine-tRNA-protein transferase, C terminus VPBB_0968 PF04376 Arginine-tRNA-protein transferase, N terminus VPBB_0969 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VPBB_0971 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VPBB_0972 PF10692 Protein of unknown function (DUF2498) VPBB_0973 PF01751 Toprim domain VPBB_0973 PF08272 Topoisomerase I zinc-ribbon-like VPBB_0973 PF01131 DNA topoisomerase VPBB_0973 PF01396 Topoisomerase DNA binding C4 zinc finger VPBB_0974 PF00483 Nucleotidyl transferase VPBB_0975 PF08323 Starch synthase catalytic domain VPBB_0975 PF00534 Glycosyl transferases group 1 VPBB_0979 PF04994 TfoX C-terminal domain VPBB_0979 PF04993 TfoX N-terminal domain VPBB_0980 PF00356 Bacterial regulatory proteins, lacI family VPBB_0981 PF02613 Nitrate reductase delta subunit VPBB_0982 PF00486 Transcriptional regulatory protein, C terminal VPBB_0982 PF00072 Response regulator receiver domain VPBB_0983 PF02698 DUF218 domain VPBB_0985 PF03882 MukF winged-helix domain VPBB_0985 PF17192 MukF middle domain VPBB_0985 PF17193 MukF C-terminal domain VPBB_0986 PF04288 MukE-like family VPBB_0987 PF04310 MukB N-terminal VPBB_0987 PF16330 MukB hinge domain VPBB_0989 PF08443 RimK-like ATP-grasp domain VPBB_0989 PF18030 RimK PreATP-grasp domain VPBB_0991 PF08443 RimK-like ATP-grasp domain VPBB_0991 PF18030 RimK PreATP-grasp domain VPBB_0992 PF08003 Protein of unknown function (DUF1698) VPBB_0993 PF13649 Methyltransferase domain VPBB_0994 PF01904 Protein of unknown function DUF72 VPBB_0995 PF00152 tRNA synthetases class II (D, K and N) VPBB_0995 PF02938 GAD domain VPBB_0995 PF01336 OB-fold nucleic acid binding domain VPBB_0996 PF02075 Crossover junction endodeoxyribonuclease RuvC VPBB_0997 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_0997 PF02203 Tar ligand binding domain homologue VPBB_0997 PF00672 HAMP domain VPBB_0998 PF07499 RuvA, C-terminal domain VPBB_0998 PF01330 RuvA N terminal domain VPBB_0999 PF05496 Holliday junction DNA helicase RuvB P-loop domain VPBB_0999 PF17864 RuvB AAA lid domain VPBB_0999 PF05491 RuvB C-terminal winged helix domain VPBB_1000 PF01654 Cytochrome bd terminal oxidase subunit I VPBB_1001 PF02322 Cytochrome bd terminal oxidase subunit II VPBB_1003 PF03061 Thioesterase superfamily VPBB_1004 PF01618 MotA/TolQ/ExbB proton channel family VPBB_1005 PF02472 Biopolymer transport protein ExbD/TolR VPBB_1007 PF04052 TolB amino-terminal domain VPBB_1007 PF07676 WD40-like Beta Propeller Repeat VPBB_1008 PF00691 OmpA family VPBB_1009 PF16331 TolA binding protein trimerisation VPBB_1009 PF13174 Tetratricopeptide repeat VPBB_1010 PF02445 Quinolinate synthetase A protein VPBB_1012 PF03994 Domain of Unknown Function (DUF350) VPBB_1014 PF03738 Glutathionylspermidine synthase preATP-grasp VPBB_1016 PF09308 LuxQ, periplasmic VPBB_1016 PF00072 Response regulator receiver domain VPBB_1016 PF00512 His Kinase A (phospho-acceptor) domain VPBB_1016 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_1017 PF06610 L-alanine exporter VPBB_1018 PF12729 Four helix bundle sensory module for signal transduction VPBB_1018 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_1018 PF00672 HAMP domain VPBB_1019 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VPBB_1019 PF00529 HlyD membrane-fusion protein of T1SS VPBB_1020 PF00873 AcrB/AcrD/AcrF family VPBB_1024 PF00579 tRNA synthetases class I (W and Y) VPBB_1027 PF03372 Endonuclease/Exonuclease/phosphatase family VPBB_1028 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) VPBB_1030 PF03466 LysR substrate binding domain VPBB_1030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_1032 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VPBB_1032 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VPBB_1033 PF01037 Lrp/AsnC ligand binding domain VPBB_1034 PF01580 FtsK/SpoIIIE family VPBB_1034 PF13491 4TM region of DNA translocase FtsK/SpoIIIE VPBB_1034 PF09397 Ftsk gamma domain VPBB_1034 PF17854 FtsK alpha domain VPBB_1035 PF03548 Outer membrane lipoprotein carrier protein LolA VPBB_1036 PF00004 ATPase family associated with various cellular activities (AAA) VPBB_1036 PF12002 MgsA AAA+ ATPase C terminal VPBB_1036 PF16193 AAA C-terminal domain VPBB_1037 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VPBB_1037 PF02403 Seryl-tRNA synthetase N-terminal domain VPBB_1039 PF01258 Prokaryotic dksA/traR C4-type zinc finger VPBB_1040 PF00202 Aminotransferase class-III VPBB_1041 PF04055 Radical SAM superfamily VPBB_1041 PF06968 Biotin and Thiamin Synthesis associated domain VPBB_1042 PF00155 Aminotransferase class I and II VPBB_1043 PF08241 Methyltransferase domain VPBB_1046 PF01435 Peptidase family M48 VPBB_1048 PF00106 short chain dehydrogenase VPBB_1055 PF08328 Adenylosuccinate lyase C-terminal VPBB_1055 PF00206 Lyase VPBB_1056 PF04356 Protein of unknown function (DUF489) VPBB_1059 PF00294 pfkB family carbohydrate kinase VPBB_1060 PF00816 H-NS histone family VPBB_1061 PF03553 Na+/H+ antiporter family VPBB_1064 PF08029 HisG, C-terminal domain VPBB_1064 PF01634 ATP phosphoribosyltransferase VPBB_1065 PF00815 Histidinol dehydrogenase VPBB_1066 PF00155 Aminotransferase class I and II VPBB_1067 PF08645 Polynucleotide kinase 3 phosphatase VPBB_1067 PF00475 Imidazoleglycerol-phosphate dehydratase VPBB_1068 PF00117 Glutamine amidotransferase class-I VPBB_1069 PF00977 Histidine biosynthesis protein VPBB_1070 PF00977 Histidine biosynthesis protein VPBB_1071 PF01502 Phosphoribosyl-AMP cyclohydrolase VPBB_1071 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VPBB_1072 PF02810 SEC-C motif VPBB_1073 PF00563 EAL domain VPBB_1073 PF08668 HDOD domain VPBB_1074 PF00149 Calcineurin-like phosphoesterase VPBB_1075 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VPBB_1076 PF01406 tRNA synthetases class I (C) catalytic domain VPBB_1076 PF09190 DALR domain VPBB_1077 PF00265 Thymidine kinase VPBB_1078 PF02698 DUF218 domain VPBB_1083 PF01226 Formate/nitrite transporter VPBB_1085 PF03649 Uncharacterised protein family (UPF0014) VPBB_1086 PF06796 Periplasmic nitrate reductase protein NapE VPBB_1087 PF03264 NapC/NirT cytochrome c family, N-terminal region VPBB_1088 PF18364 Molybdopterin oxidoreductase N-terminal domain VPBB_1088 PF00384 Molybdopterin oxidoreductase VPBB_1088 PF01568 Molydopterin dinucleotide binding domain VPBB_1089 PF16874 Glycosyl hydrolase family 36 C-terminal domain VPBB_1089 PF16875 Glycosyl hydrolase family 36 N-terminal domain VPBB_1091 PF02833 DHHA2 domain VPBB_1091 PF01368 DHH family VPBB_1094 PF00005 ABC transporter VPBB_1094 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VPBB_1095 PF12911 N-terminal TM domain of oligopeptide transport permease C VPBB_1095 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_1096 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_1097 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VPBB_1099 PF04012 PspA/IM30 family VPBB_1100 PF06667 Phage shock protein B VPBB_1101 PF04024 PspC domain VPBB_1102 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VPBB_1103 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VPBB_1104 PF00873 AcrB/AcrD/AcrF family VPBB_1105 PF03352 Methyladenine glycosylase VPBB_1106 PF03280 Proteobacterial lipase chaperone protein VPBB_1107 PF00561 alpha/beta hydrolase fold VPBB_1108 PF01053 Cys/Met metabolism PLP-dependent enzyme VPBB_1110 PF13091 PLD-like domain VPBB_1110 PF13396 Phospholipase_D-nuclease N-terminal VPBB_1111 PF00209 Sodium:neurotransmitter symporter family VPBB_1112 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_1112 PF12729 Four helix bundle sensory module for signal transduction VPBB_1112 PF00672 HAMP domain VPBB_1113 PF00849 RNA pseudouridylate synthase VPBB_1115 PF00970 Oxidoreductase FAD-binding domain VPBB_1115 PF00111 2Fe-2S iron-sulfur cluster binding domain VPBB_1115 PF00175 Oxidoreductase NAD-binding domain VPBB_1116 PF03063 Prismane/CO dehydrogenase family VPBB_1117 PF01590 GAF domain VPBB_1117 PF00158 Sigma-54 interaction domain VPBB_1119 PF01066 CDP-alcohol phosphatidyltransferase VPBB_1121 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_1122 PF13416 Bacterial extracellular solute-binding protein VPBB_1123 PF09335 SNARE associated Golgi protein VPBB_1125 PF07992 Pyridine nucleotide-disulphide oxidoreductase VPBB_1125 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VPBB_1127 PF00512 His Kinase A (phospho-acceptor) domain VPBB_1127 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_1128 PF00196 Bacterial regulatory proteins, luxR family VPBB_1128 PF00072 Response regulator receiver domain VPBB_1131 PF02872 5'-nucleotidase, C-terminal domain VPBB_1131 PF00149 Calcineurin-like phosphoesterase VPBB_1134 PF01386 Ribosomal L25p family VPBB_1135 PF00512 His Kinase A (phospho-acceptor) domain VPBB_1135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_1135 PF00672 HAMP domain VPBB_1136 PF00486 Transcriptional regulatory protein, C terminal VPBB_1136 PF00072 Response regulator receiver domain VPBB_1138 PF00271 Helicase conserved C-terminal domain VPBB_1138 PF04851 Type III restriction enzyme, res subunit VPBB_1139 PF01479 S4 domain VPBB_1139 PF00849 RNA pseudouridylate synthase VPBB_1140 PF07690 Major Facilitator Superfamily VPBB_1143 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) VPBB_1147 PF11066 Protein of unknown function (DUF2867) VPBB_1147 PF13460 NAD(P)H-binding VPBB_1148 PF01554 MatE VPBB_1149 PF00005 ABC transporter VPBB_1152 PF06965 Na+/H+ antiporter 1 VPBB_1153 PF00440 Bacterial regulatory proteins, tetR family VPBB_1153 PF16295 Tetracyclin repressor-like, C-terminal domain VPBB_1154 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VPBB_1154 PF02770 Acyl-CoA dehydrogenase, middle domain VPBB_1154 PF09317 Domain of unknown function (DUF1974) VPBB_1154 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VPBB_1155 PF07055 Enoyl reductase FAD binding domain VPBB_1155 PF12241 Trans-2-enoyl-CoA reductase catalytic region VPBB_1155 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VPBB_1156 PF06826 Predicted Permease Membrane Region VPBB_1156 PF02080 TrkA-C domain VPBB_1157 PF00462 Glutaredoxin VPBB_1158 PF00465 Iron-containing alcohol dehydrogenase VPBB_1159 PF01380 SIS domain VPBB_1159 PF01418 Helix-turn-helix domain, rpiR family VPBB_1160 PF00282 Pyridoxal-dependent decarboxylase conserved domain VPBB_1162 PF03956 Lysine exporter LysO VPBB_1165 PF04993 TfoX N-terminal domain VPBB_1165 PF04994 TfoX C-terminal domain VPBB_1168 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_1168 PF00497 Bacterial extracellular solute-binding proteins, family 3 VPBB_1168 PF00512 His Kinase A (phospho-acceptor) domain VPBB_1170 PF00266 Aminotransferase class-V VPBB_1171 PF00291 Pyridoxal-phosphate dependent enzyme VPBB_1173 PF00005 ABC transporter VPBB_1173 PF00664 ABC transporter transmembrane region VPBB_1176 PF00266 Aminotransferase class-V VPBB_1179 PF00072 Response regulator receiver domain VPBB_1179 PF00990 Diguanylate cyclase, GGDEF domain VPBB_1180 PF00939 Sodium:sulfate symporter transmembrane region VPBB_1181 PF02698 DUF218 domain VPBB_1182 PF00390 Malic enzyme, N-terminal domain VPBB_1182 PF03949 Malic enzyme, NAD binding domain VPBB_1183 PF04408 Helicase associated domain (HA2) VPBB_1183 PF00271 Helicase conserved C-terminal domain VPBB_1183 PF08482 ATP-dependent helicase C-terminal VPBB_1183 PF00270 DEAD/DEAH box helicase VPBB_1186 PF16655 PhoD-like phosphatase, N-terminal domain VPBB_1186 PF09423 PhoD-like phosphatase VPBB_1187 PF01259 SAICAR synthetase VPBB_1191 PF00691 OmpA family VPBB_1191 PF05736 OprF membrane domain VPBB_1194 PF01565 FAD binding domain VPBB_1194 PF13183 4Fe-4S dicluster domain VPBB_1194 PF02913 FAD linked oxidases, C-terminal domain VPBB_1195 PF04191 Phospholipid methyltransferase VPBB_1197 PF00221 Aromatic amino acid lyase VPBB_1198 PF01175 Urocanase Rossmann-like domain VPBB_1198 PF17392 Urocanase C-terminal domain VPBB_1198 PF17391 Urocanase N-terminal domain VPBB_1199 PF00491 Arginase family VPBB_1200 PF01979 Amidohydrolase family VPBB_1201 PF00392 Bacterial regulatory proteins, gntR family VPBB_1201 PF07702 UTRA domain VPBB_1204 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VPBB_1204 PF02824 TGS domain VPBB_1204 PF03129 Anticodon binding domain VPBB_1204 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VPBB_1205 PF05198 Translation initiation factor IF-3, N-terminal domain VPBB_1205 PF00707 Translation initiation factor IF-3, C-terminal domain VPBB_1206 PF01632 Ribosomal protein L35 VPBB_1207 PF00453 Ribosomal protein L20 VPBB_1208 PF01906 Putative heavy-metal-binding VPBB_1214 PF17158 Membrane-associated sensor, integral membrane domain VPBB_1214 PF00990 Diguanylate cyclase, GGDEF domain VPBB_1215 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VPBB_1215 PF01409 tRNA synthetases class II core domain (F) VPBB_1216 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain VPBB_1216 PF03483 B3/4 domain VPBB_1216 PF03484 tRNA synthetase B5 domain VPBB_1216 PF01588 Putative tRNA binding domain VPBB_1216 PF03147 Ferredoxin-fold anticodon binding domain VPBB_1218 PF00216 Bacterial DNA-binding protein VPBB_1220 PF05724 Thiopurine S-methyltransferase (TPMT) VPBB_1221 PF02222 ATP-grasp domain VPBB_1222 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region VPBB_1222 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VPBB_1223 PF04172 LrgB-like family VPBB_1225 PF08411 Exonuclease C-terminal VPBB_1225 PF00929 Exonuclease VPBB_1229 PF02277 Phosphoribosyltransferase VPBB_1230 PF02654 Cobalamin-5-phosphate synthase VPBB_1231 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase VPBB_1234 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VPBB_1235 PF01032 FecCD transport family VPBB_1236 PF00005 ABC transporter VPBB_1240 PF03466 LysR substrate binding domain VPBB_1240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_1244 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VPBB_1245 PF16363 GDP-mannose 4,6 dehydratase VPBB_1246 PF04991 LicD family VPBB_1248 PF05971 RNA methyltransferase VPBB_1252 PF00392 Bacterial regulatory proteins, gntR family VPBB_1253 PF00171 Aldehyde dehydrogenase family VPBB_1254 PF05544 Proline racemase VPBB_1257 PF02423 Ornithine cyclodeaminase/mu-crystallin family VPBB_1258 PF00701 Dihydrodipicolinate synthetase family VPBB_1259 PF00005 ABC transporter VPBB_1259 PF08402 TOBE domain VPBB_1260 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_1261 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_1263 PF08453 Peptidase family M9 N-terminal VPBB_1263 PF01752 Collagenase VPBB_1265 PF00005 ABC transporter VPBB_1265 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VPBB_1266 PF00005 ABC transporter VPBB_1266 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VPBB_1267 PF12911 N-terminal TM domain of oligopeptide transport permease C VPBB_1267 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_1268 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_1269 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VPBB_1270 PF01546 Peptidase family M20/M25/M40 VPBB_1270 PF07687 Peptidase dimerisation domain VPBB_1271 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VPBB_1272 PF04209 homogentisate 1,2-dioxygenase VPBB_1274 PF02798 Glutathione S-transferase, N-terminal domain VPBB_1274 PF14497 Glutathione S-transferase, C-terminal domain VPBB_1281 PF13533 Biotin-lipoyl like VPBB_1284 PF08543 Phosphomethylpyrimidine kinase VPBB_1285 PF03466 LysR substrate binding domain VPBB_1285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_1289 PF00300 Histidine phosphatase superfamily (branch 1) VPBB_1292 PF00939 Sodium:sulfate symporter transmembrane region VPBB_1293 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_1293 PF00512 His Kinase A (phospho-acceptor) domain VPBB_1293 PF00497 Bacterial extracellular solute-binding proteins, family 3 VPBB_1294 PF00158 Sigma-54 interaction domain VPBB_1294 PF00072 Response regulator receiver domain VPBB_1294 PF02954 Bacterial regulatory protein, Fis family VPBB_1295 PF00563 EAL domain VPBB_1295 PF00990 Diguanylate cyclase, GGDEF domain VPBB_1295 PF03707 Bacterial signalling protein N terminal repeat VPBB_1296 PF11871 Domain of unknown function (DUF3391) VPBB_1296 PF01966 HD domain VPBB_1297 PF01810 LysE type translocator VPBB_1298 PF11230 Protein of unknown function (DUF3029) VPBB_1299 PF04055 Radical SAM superfamily VPBB_1301 PF03741 Integral membrane protein TerC family VPBB_1302 PF01551 Peptidase family M23 VPBB_1302 PF08525 Opacity-associated protein A N-terminal motif VPBB_1302 PF01476 LysM domain VPBB_1307 PF00158 Sigma-54 interaction domain VPBB_1307 PF02954 Bacterial regulatory protein, Fis family VPBB_1308 PF07724 AAA domain (Cdc48 subfamily) VPBB_1308 PF00004 ATPase family associated with various cellular activities (AAA) VPBB_1308 PF17871 AAA lid domain VPBB_1308 PF10431 C-terminal, D2-small domain, of ClpB protein VPBB_1309 PF05638 Type VI secretion system effector, Hcp VPBB_1310 PF04717 Type VI secretion system, phage-baseplate injector VPBB_1315 PF00069 Protein kinase domain VPBB_1337 PF01966 HD domain VPBB_1338 PF00465 Iron-containing alcohol dehydrogenase VPBB_1339 PF03222 Tryptophan/tyrosine permease family VPBB_1343 PF00664 ABC transporter transmembrane region VPBB_1343 PF00005 ABC transporter VPBB_1349 PF00012 Hsp70 protein VPBB_1350 PF00012 Hsp70 protein VPBB_1352 PF00990 Diguanylate cyclase, GGDEF domain VPBB_1352 PF17158 Membrane-associated sensor, integral membrane domain VPBB_1358 PF01568 Molydopterin dinucleotide binding domain VPBB_1358 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VPBB_1358 PF00384 Molybdopterin oxidoreductase VPBB_1359 PF13247 4Fe-4S dicluster domain VPBB_1359 PF12800 4Fe-4S binding domain VPBB_1360 PF04976 DMSO reductase anchor subunit (DmsC) VPBB_1361 PF02613 Nitrate reductase delta subunit VPBB_1363 PF02525 Flavodoxin-like fold VPBB_1364 PF00271 Helicase conserved C-terminal domain VPBB_1364 PF11898 Domain of unknown function (DUF3418) VPBB_1364 PF04408 Helicase associated domain (HA2) VPBB_1364 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VPBB_1364 PF00270 DEAD/DEAH box helicase VPBB_1367 PF02028 BCCT, betaine/carnitine/choline family transporter VPBB_1370 PF00535 Glycosyl transferase family 2 VPBB_1371 PF13439 Glycosyltransferase Family 4 VPBB_1371 PF00534 Glycosyl transferases group 1 VPBB_1377 PF13439 Glycosyltransferase Family 4 VPBB_1377 PF00534 Glycosyl transferases group 1 VPBB_1379 PF02954 Bacterial regulatory protein, Fis family VPBB_1379 PF00072 Response regulator receiver domain VPBB_1379 PF00158 Sigma-54 interaction domain VPBB_1382 PF10531 SLBB domain VPBB_1382 PF02563 Polysaccharide biosynthesis/export protein VPBB_1384 PF01740 STAS domain VPBB_1385 PF14743 DNA ligase OB-like domain VPBB_1385 PF01068 ATP dependent DNA ligase domain VPBB_1387 PF01554 MatE VPBB_1388 PF00677 Lumazine binding domain VPBB_1391 PF01339 CheB methylesterase VPBB_1391 PF00072 Response regulator receiver domain VPBB_1392 PF00990 Diguanylate cyclase, GGDEF domain VPBB_1392 PF05230 MASE2 domain VPBB_1394 PF00877 NlpC/P60 family VPBB_1395 PF00672 HAMP domain VPBB_1395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_1395 PF02743 Cache domain VPBB_1402 PF00480 ROK family VPBB_1404 PF00994 Probable molybdopterin binding domain VPBB_1404 PF03453 MoeA N-terminal region (domain I and II) VPBB_1404 PF03454 MoeA C-terminal region (domain IV) VPBB_1405 PF12804 MobA-like NTP transferase domain VPBB_1407 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_1408 PF12849 PBP superfamily domain VPBB_1409 PF00158 Sigma-54 interaction domain VPBB_1409 PF00072 Response regulator receiver domain VPBB_1409 PF02954 Bacterial regulatory protein, Fis family VPBB_1410 PF00512 His Kinase A (phospho-acceptor) domain VPBB_1410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_1411 PF12848 ABC transporter VPBB_1411 PF00005 ABC transporter VPBB_1412 PF02634 FdhD/NarQ family VPBB_1416 PF02613 Nitrate reductase delta subunit VPBB_1418 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VPBB_1418 PF01568 Molydopterin dinucleotide binding domain VPBB_1418 PF00384 Molybdopterin oxidoreductase VPBB_1419 PF13247 4Fe-4S dicluster domain VPBB_1428 PF00909 Ammonium Transporter Family VPBB_1430 PF02146 Sir2 family VPBB_1431 PF13416 Bacterial extracellular solute-binding protein VPBB_1432 PF13416 Bacterial extracellular solute-binding protein VPBB_1434 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_1435 PF00005 ABC transporter VPBB_1435 PF08402 TOBE domain VPBB_1439 PF01171 PP-loop family VPBB_1440 PF00582 Universal stress protein family VPBB_1441 PF13545 Crp-like helix-turn-helix domain VPBB_1441 PF00027 Cyclic nucleotide-binding domain VPBB_1444 PF00403 Heavy-metal-associated domain VPBB_1446 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VPBB_1446 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP VPBB_1449 PF00115 Cytochrome C and Quinol oxidase polypeptide I VPBB_1452 PF09308 LuxQ, periplasmic VPBB_1452 PF00072 Response regulator receiver domain VPBB_1452 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_1452 PF00512 His Kinase A (phospho-acceptor) domain VPBB_1455 PF13654 AAA domain VPBB_1455 PF05362 Lon protease (S16) C-terminal proteolytic domain VPBB_1456 PF07977 FabA-like domain VPBB_1460 PF02926 THUMP domain VPBB_1460 PF10672 S-adenosylmethionine-dependent methyltransferase VPBB_1460 PF01170 Putative RNA methylase family UPF0020 VPBB_1461 PF07126 Cell-division protein ZapC VPBB_1462 PF01180 Dihydroorotate dehydrogenase VPBB_1463 PF05088 Bacterial NAD-glutamate dehydrogenase VPBB_1464 PF11940 Domain of unknown function (DUF3458) Ig-like fold VPBB_1464 PF01433 Peptidase family M1 domain VPBB_1464 PF17432 Domain of unknown function (DUF3458_C) ARM repeats VPBB_1466 PF11818 C-terminal domain of tail specific protease (DUF3340) VPBB_1466 PF00595 PDZ domain VPBB_1466 PF03572 Peptidase family S41 VPBB_1466 PF17804 Tail specific protease N-terminal domain VPBB_1467 PF17516 ProQ C-terminal domain VPBB_1467 PF04352 ProQ/FINO family VPBB_1468 PF13185 GAF domain VPBB_1469 PF00664 ABC transporter transmembrane region VPBB_1469 PF00005 ABC transporter VPBB_1470 PF04403 Paraquat-inducible protein A VPBB_1471 PF02470 MlaD protein VPBB_1472 PF01189 16S rRNA methyltransferase RsmB/F VPBB_1472 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF VPBB_1472 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF VPBB_1476 PF00793 DAHP synthetase I family VPBB_1477 PF04461 Protein of unknown function (DUF520) VPBB_1478 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VPBB_1478 PF14824 Sirohaem biosynthesis protein central VPBB_1478 PF10414 Sirohaem synthase dimerisation region VPBB_1479 PF00497 Bacterial extracellular solute-binding proteins, family 3 VPBB_1480 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_1481 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_1482 PF00005 ABC transporter VPBB_1483 PF01027 Inhibitor of apoptosis-promoting Bax1 VPBB_1485 PF04358 DsrC like protein VPBB_1486 PF00708 Acylphosphatase VPBB_1487 PF00672 HAMP domain VPBB_1487 PF02743 Cache domain VPBB_1487 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_1489 PF10672 S-adenosylmethionine-dependent methyltransferase VPBB_1489 PF17785 PUA-like domain VPBB_1492 PF00691 OmpA family VPBB_1492 PF05736 OprF membrane domain VPBB_1495 PF00691 OmpA family VPBB_1495 PF05736 OprF membrane domain VPBB_1497 PF00990 Diguanylate cyclase, GGDEF domain VPBB_1497 PF17158 Membrane-associated sensor, integral membrane domain VPBB_1498 PF06508 Queuosine biosynthesis protein QueC VPBB_1499 PF04055 Radical SAM superfamily VPBB_1502 PF00089 Trypsin VPBB_1504 PF16177 Acetyl-coenzyme A synthetase N-terminus VPBB_1504 PF00501 AMP-binding enzyme VPBB_1504 PF13193 AMP-binding enzyme C-terminal domain VPBB_1505 PF04303 PrpF protein VPBB_1506 PF00694 Aconitase C-terminal domain VPBB_1506 PF00330 Aconitase family (aconitate hydratase) VPBB_1507 PF00285 Citrate synthase, C-terminal domain VPBB_1513 PF01970 Tripartite tricarboxylate transporter TctA family VPBB_1514 PF01925 Sulfite exporter TauE/SafE VPBB_1516 PF05844 YopD protein VPBB_1518 PF07720 Tetratricopeptide repeat VPBB_1519 PF04792 V antigen (LcrV) protein VPBB_1520 PF07216 LcrG protein VPBB_1521 PF09621 Type III secretion system regulator (LcrR) VPBB_1522 PF00771 FHIPEP family VPBB_1526 PF09059 TyeA VPBB_1527 PF07201 HrpJ-like domain VPBB_1528 PF18269 T3SS EscN ATPase C-terminal domain VPBB_1528 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VPBB_1528 PF02874 ATP synthase alpha/beta family, beta-barrel domain VPBB_1531 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VPBB_1532 PF00813 FliP family VPBB_1533 PF01313 Bacterial export proteins, family 3 VPBB_1534 PF01311 Bacterial export proteins, family 1 VPBB_1535 PF01312 FlhB HrpN YscU SpaS Family VPBB_1536 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_1536 PF03466 LysR substrate binding domain VPBB_1537 PF12146 Serine aminopeptidase, S33 VPBB_1538 PF12146 Serine aminopeptidase, S33 VPBB_1544 PF02661 Fic/DOC family VPBB_1546 PF02108 Flagellar assembly protein FliH VPBB_1548 PF01514 Secretory protein of YscJ/FliF family VPBB_1549 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI VPBB_1551 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) VPBB_1552 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF VPBB_1554 PF16693 Inner membrane component of T3SS, periplasmic domain VPBB_1554 PF16697 Inner membrane component of T3SS, cytoplasmic domain VPBB_1558 PF12833 Helix-turn-helix domain VPBB_1562 PF00171 Aldehyde dehydrogenase family VPBB_1563 PF00158 Sigma-54 interaction domain VPBB_1563 PF02954 Bacterial regulatory protein, Fis family VPBB_1563 PF01590 GAF domain VPBB_1568 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain VPBB_1568 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VPBB_1569 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VPBB_1570 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain VPBB_1570 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain VPBB_1571 PF12431 Transcriptional regulator VPBB_1571 PF00072 Response regulator receiver domain VPBB_1572 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_1572 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VPBB_1572 PF00989 PAS fold VPBB_1572 PF17203 Single cache domain 3 VPBB_1574 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VPBB_1577 PF00034 Cytochrome c VPBB_1577 PF03150 Di-haem cytochrome c peroxidase VPBB_1578 PF13840 ACT domain VPBB_1578 PF00696 Amino acid kinase family VPBB_1579 PF06339 Ectoine synthase VPBB_1580 PF00202 Aminotransferase class-III VPBB_1581 PF00583 Acetyltransferase (GNAT) family VPBB_1582 PF02028 BCCT, betaine/carnitine/choline family transporter VPBB_1585 PF00571 CBS domain VPBB_1585 PF00005 ABC transporter VPBB_1586 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_1587 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VPBB_1589 PF00501 AMP-binding enzyme VPBB_1593 PF00486 Transcriptional regulatory protein, C terminal VPBB_1593 PF00072 Response regulator receiver domain VPBB_1594 PF00512 His Kinase A (phospho-acceptor) domain VPBB_1594 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_1594 PF08521 Two-component sensor kinase N-terminal VPBB_1595 PF00884 Sulfatase VPBB_1600 PF01235 Sodium:alanine symporter family VPBB_1602 PF01810 LysE type translocator VPBB_1603 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VPBB_1604 PF03279 Bacterial lipid A biosynthesis acyltransferase VPBB_1607 PF13520 Amino acid permease VPBB_1609 PF04204 Homoserine O-succinyltransferase VPBB_1612 PF00990 Diguanylate cyclase, GGDEF domain VPBB_1612 PF03707 Bacterial signalling protein N terminal repeat VPBB_1612 PF00563 EAL domain VPBB_1613 PF00672 HAMP domain VPBB_1613 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_1613 PF00512 His Kinase A (phospho-acceptor) domain VPBB_1613 PF00072 Response regulator receiver domain VPBB_1613 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VPBB_1613 PF01627 Hpt domain VPBB_1616 PF00132 Bacterial transferase hexapeptide (six repeats) VPBB_1616 PF12464 Maltose acetyltransferase VPBB_1618 PF01928 CYTH domain VPBB_1620 PF04237 YjbR VPBB_1621 PF01047 MarR family VPBB_1623 PF12833 Helix-turn-helix domain VPBB_1627 PF00563 EAL domain VPBB_1627 PF00196 Bacterial regulatory proteins, luxR family VPBB_1628 PF02833 DHHA2 domain VPBB_1628 PF01368 DHH family VPBB_1629 PF00202 Aminotransferase class-III VPBB_1630 PF00171 Aldehyde dehydrogenase family VPBB_1631 PF04371 Porphyromonas-type peptidyl-arginine deiminase VPBB_1632 PF00795 Carbon-nitrogen hydrolase VPBB_1633 PF01266 FAD dependent oxidoreductase VPBB_1634 PF00171 Aldehyde dehydrogenase family VPBB_1635 PF01381 Helix-turn-helix VPBB_1635 PF07883 Cupin domain VPBB_1636 PF07722 Peptidase C26 VPBB_1637 PF00120 Glutamine synthetase, catalytic domain VPBB_1638 PF03553 Na+/H+ antiporter family VPBB_1643 PF01810 LysE type translocator VPBB_1646 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VPBB_1687 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VPBB_1687 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VPBB_1688 PF13276 HTH-like domain VPBB_1688 PF13333 Integrase core domain VPBB_1688 PF00665 Integrase core domain VPBB_1701 PF05016 ParE toxin of type II toxin-antitoxin system, parDE VPBB_1706 PF05016 ParE toxin of type II toxin-antitoxin system, parDE VPBB_1717 PF13495 Phage integrase, N-terminal SAM-like domain VPBB_1717 PF00589 Phage integrase family VPBB_1720 PF13302 Acetyltransferase (GNAT) domain VPBB_1721 PF00158 Sigma-54 interaction domain VPBB_1721 PF18024 Helix-turn-helix domain VPBB_1722 PF05128 Domain of unknown function (DUF697) VPBB_1723 PF04317 YcjX-like family, DUF463 VPBB_1726 PF00425 chorismate binding enzyme VPBB_1726 PF04715 Anthranilate synthase component I, N terminal region VPBB_1727 PF09308 LuxQ, periplasmic VPBB_1727 PF00512 His Kinase A (phospho-acceptor) domain VPBB_1727 PF00072 Response regulator receiver domain VPBB_1727 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_1730 PF03222 Tryptophan/tyrosine permease family VPBB_1731 PF03313 Serine dehydratase alpha chain VPBB_1731 PF03315 Serine dehydratase beta chain VPBB_1732 PF00563 EAL domain VPBB_1732 PF04940 Sensors of blue-light using FAD VPBB_1734 PF01242 6-pyruvoyl tetrahydropterin synthase VPBB_1735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_1735 PF00672 HAMP domain VPBB_1735 PF02743 Cache domain VPBB_1736 PF00152 tRNA synthetases class II (D, K and N) VPBB_1736 PF01336 OB-fold nucleic acid binding domain VPBB_1738 PF00392 Bacterial regulatory proteins, gntR family VPBB_1738 PF00155 Aminotransferase class I and II VPBB_1741 PF00155 Aminotransferase class I and II VPBB_1745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_1745 PF00672 HAMP domain VPBB_1746 PF02028 BCCT, betaine/carnitine/choline family transporter VPBB_1747 PF01047 MarR family VPBB_1748 PF00072 Response regulator receiver domain VPBB_1748 PF00196 Bacterial regulatory proteins, luxR family VPBB_1749 PF07730 Histidine kinase VPBB_1749 PF17200 Single Cache domain 2 VPBB_1750 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VPBB_1752 PF03480 Bacterial extracellular solute-binding protein, family 7 VPBB_1755 PF00753 Metallo-beta-lactamase superfamily VPBB_1756 PF05951 Bacterial protein of unknown function (DUF882) VPBB_1757 PF01471 Putative peptidoglycan binding domain VPBB_1757 PF03734 L,D-transpeptidase catalytic domain VPBB_1762 PF00925 GTP cyclohydrolase II VPBB_1764 PF03918 Cytochrome C biogenesis protein VPBB_1765 PF08534 Redoxin VPBB_1766 PF01578 Cytochrome C assembly protein VPBB_1766 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VPBB_1767 PF03916 Polysulphide reductase, NrfD VPBB_1768 PF13247 4Fe-4S dicluster domain VPBB_1770 PF02335 Cytochrome c552 VPBB_1773 PF00521 DNA gyrase/topoisomerase IV, subunit A VPBB_1773 PF03989 DNA gyrase C-terminal domain, beta-propeller VPBB_1775 PF02867 Ribonucleotide reductase, barrel domain VPBB_1775 PF00317 Ribonucleotide reductase, all-alpha domain VPBB_1775 PF03477 ATP cone domain VPBB_1776 PF00268 Ribonucleotide reductase, small chain VPBB_1778 PF00994 Probable molybdopterin binding domain VPBB_1782 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VPBB_1783 PF16653 Saccharopine dehydrogenase C-terminal domain VPBB_1783 PF03435 Saccharopine dehydrogenase NADP binding domain VPBB_1784 PF00202 Aminotransferase class-III VPBB_1785 PF01066 CDP-alcohol phosphatidyltransferase VPBB_1786 PF08459 UvrC Helix-hairpin-helix N-terminal VPBB_1786 PF01541 GIY-YIG catalytic domain VPBB_1786 PF02151 UvrB/uvrC motif VPBB_1787 PF00072 Response regulator receiver domain VPBB_1787 PF00196 Bacterial regulatory proteins, luxR family VPBB_1788 PF03104 DNA polymerase family B, exonuclease domain VPBB_1788 PF00136 DNA polymerase family B VPBB_1790 PF01132 Elongation factor P (EF-P) OB domain VPBB_1790 PF09285 Elongation factor P, C-terminal VPBB_1790 PF08207 Elongation factor P (EF-P) KOW-like domain VPBB_1791 PF04269 Protein of unknown function, DUF440 VPBB_1792 PF00849 RNA pseudouridylate synthase VPBB_1792 PF01479 S4 domain VPBB_1794 PF01300 Telomere recombination VPBB_1795 PF02811 PHP domain VPBB_1796 PF08056 Tryptophan operon leader peptide VPBB_1797 PF04715 Anthranilate synthase component I, N terminal region VPBB_1797 PF00425 chorismate binding enzyme VPBB_1798 PF00117 Glutamine amidotransferase class-I VPBB_1799 PF00591 Glycosyl transferase family, a/b domain VPBB_1799 PF02885 Glycosyl transferase family, helical bundle domain VPBB_1800 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VPBB_1800 PF00218 Indole-3-glycerol phosphate synthase VPBB_1801 PF00291 Pyridoxal-phosphate dependent enzyme VPBB_1802 PF00290 Tryptophan synthase alpha chain VPBB_1803 PF13545 Crp-like helix-turn-helix domain VPBB_1803 PF00027 Cyclic nucleotide-binding domain VPBB_1804 PF13193 AMP-binding enzyme C-terminal domain VPBB_1804 PF00501 AMP-binding enzyme VPBB_1805 PF00375 Sodium:dicarboxylate symporter family VPBB_1806 PF17327 Acyl homoserine lactone synthase VPBB_1807 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_1807 PF00072 Response regulator receiver domain VPBB_1809 PF04279 Intracellular septation protein A VPBB_1810 PF03061 Thioesterase superfamily VPBB_1811 PF03795 YCII-related domain VPBB_1813 PF08267 Cobalamin-independent synthase, N-terminal domain VPBB_1813 PF01717 Cobalamin-independent synthase, Catalytic domain VPBB_1814 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_1814 PF03466 LysR substrate binding domain VPBB_1817 PF01590 GAF domain VPBB_1817 PF00563 EAL domain VPBB_1817 PF00990 Diguanylate cyclase, GGDEF domain VPBB_1817 PF00360 Phytochrome region VPBB_1818 PF08497 Radical SAM N-terminal VPBB_1818 PF11842 Domain of unknown function (DUF3362) VPBB_1818 PF04055 Radical SAM superfamily VPBB_1819 PF00672 HAMP domain VPBB_1819 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_1820 PF00072 Response regulator receiver domain VPBB_1820 PF00486 Transcriptional regulatory protein, C terminal VPBB_1821 PF00512 His Kinase A (phospho-acceptor) domain VPBB_1821 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_1821 PF00672 HAMP domain VPBB_1825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_1825 PF03466 LysR substrate binding domain VPBB_1826 PF00529 HlyD membrane-fusion protein of T1SS VPBB_1826 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VPBB_1828 PF01717 Cobalamin-independent synthase, Catalytic domain VPBB_1828 PF08267 Cobalamin-independent synthase, N-terminal domain VPBB_1830 PF02311 AraC-like ligand binding domain VPBB_1830 PF12833 Helix-turn-helix domain VPBB_1831 PF00857 Isochorismatase family VPBB_1832 PF12704 MacB-like periplasmic core domain VPBB_1832 PF02687 FtsX-like permease family VPBB_1832 PF00005 ABC transporter VPBB_1833 PF12704 MacB-like periplasmic core domain VPBB_1833 PF02687 FtsX-like permease family VPBB_1833 PF00005 ABC transporter VPBB_1834 PF12704 MacB-like periplasmic core domain VPBB_1834 PF00005 ABC transporter VPBB_1834 PF02687 FtsX-like permease family VPBB_1836 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VPBB_1839 PF01938 TRAM domain VPBB_1839 PF05958 tRNA (Uracil-5-)-methyltransferase VPBB_1842 PF00085 Thioredoxin VPBB_1843 PF02683 Cytochrome C biogenesis protein transmembrane region VPBB_1843 PF11412 Disulphide bond corrector protein DsbC VPBB_1845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_1845 PF03466 LysR substrate binding domain VPBB_1846 PF00196 Bacterial regulatory proteins, luxR family VPBB_1846 PF00072 Response regulator receiver domain VPBB_1847 PF00512 His Kinase A (phospho-acceptor) domain VPBB_1847 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_1848 PF13247 4Fe-4S dicluster domain VPBB_1849 PF03916 Polysulphide reductase, NrfD VPBB_1850 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VPBB_1850 PF01568 Molydopterin dinucleotide binding domain VPBB_1850 PF00384 Molybdopterin oxidoreductase VPBB_1851 PF00034 Cytochrome c VPBB_1852 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VPBB_1853 PF04403 Paraquat-inducible protein A VPBB_1854 PF02470 MlaD protein VPBB_1856 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase VPBB_1858 PF00535 Glycosyl transferase family 2 VPBB_1859 PF01370 NAD dependent epimerase/dehydratase family VPBB_1861 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VPBB_1862 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VPBB_1863 PF18073 Rubredoxin metal binding domain VPBB_1864 PF06305 Lipopolysaccharide assembly protein A domain VPBB_1865 PF00216 Bacterial DNA-binding protein VPBB_1866 PF00575 S1 RNA binding domain VPBB_1867 PF02224 Cytidylate kinase VPBB_1868 PF01343 Peptidase family S49 VPBB_1868 PF08496 Peptidase family S49 N-terminal VPBB_1869 PF00106 short chain dehydrogenase VPBB_1872 PF14579 Helix-hairpin-helix motif VPBB_1872 PF02811 PHP domain VPBB_1872 PF07733 Bacterial DNA polymerase III alpha NTPase domain VPBB_1872 PF01336 OB-fold nucleic acid binding domain VPBB_1872 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VPBB_1873 PF00072 Response regulator receiver domain VPBB_1873 PF01584 CheW-like domain VPBB_1874 PF00480 ROK family VPBB_1875 PF02887 Pyruvate kinase, alpha/beta domain VPBB_1875 PF00224 Pyruvate kinase, barrel domain VPBB_1876 PF01734 Patatin-like phospholipase VPBB_1878 PF00209 Sodium:neurotransmitter symporter family VPBB_1880 PF02378 Phosphotransferase system, EIIC VPBB_1880 PF00367 phosphotransferase system, EIIB VPBB_1881 PF01026 TatD related DNase VPBB_1882 PF09115 DNA polymerase III, delta subunit, C terminal VPBB_1883 PF02223 Thymidylate kinase VPBB_1884 PF02618 YceG-like family VPBB_1885 PF01063 Amino-transferase class IV VPBB_1886 PF00109 Beta-ketoacyl synthase, N-terminal domain VPBB_1886 PF02801 Beta-ketoacyl synthase, C-terminal domain VPBB_1887 PF00550 Phosphopantetheine attachment site VPBB_1889 PF00698 Acyl transferase domain VPBB_1890 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VPBB_1890 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VPBB_1891 PF02504 Fatty acid synthesis protein VPBB_1892 PF01783 Ribosomal L32p protein family VPBB_1893 PF02620 Large ribosomal RNA subunit accumulation protein YceD VPBB_1894 PF02545 Maf-like protein VPBB_1895 PF00849 RNA pseudouridylate synthase VPBB_1895 PF01479 S4 domain VPBB_1896 PF12111 Polyribonucleotide phosphorylase C terminal VPBB_1896 PF10150 Ribonuclease E/G family VPBB_1896 PF00575 S1 RNA binding domain VPBB_1897 PF01740 STAS domain VPBB_1897 PF00916 Sulfate permease family VPBB_1898 PF01451 Low molecular weight phosphotyrosine protein phosphatase VPBB_1899 PF12557 Cob(I)alamin adenosyltransferase N terminal VPBB_1899 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP VPBB_1901 PF00485 Phosphoribulokinase / Uridine kinase family VPBB_1902 PF10609 NUBPL iron-transfer P-loop NTPase VPBB_1903 PF09334 tRNA synthetases class I (M) VPBB_1903 PF01588 Putative tRNA binding domain VPBB_1906 PF07840 FadR C-terminal domain VPBB_1906 PF00392 Bacterial regulatory proteins, gntR family VPBB_1907 PF06450 Bacterial Na+/H+ antiporter B (NhaB) VPBB_1910 PF07517 SecA DEAD-like domain VPBB_1910 PF02810 SEC-C motif VPBB_1910 PF01043 SecA preprotein cross-linking domain VPBB_1910 PF07516 SecA Wing and Scaffold domain VPBB_1911 PF01207 Dihydrouridine synthase (Dus) VPBB_1912 PF00990 Diguanylate cyclase, GGDEF domain VPBB_1912 PF00072 Response regulator receiver domain VPBB_1913 PF00128 Alpha amylase, catalytic domain VPBB_1913 PF02903 Alpha amylase, N-terminal ig-like domain VPBB_1914 PF00005 ABC transporter VPBB_1915 PF02653 Branched-chain amino acid transport system / permease component VPBB_1917 PF04217 Protein of unknown function, DUF412 VPBB_1918 PF00871 Acetokinase family VPBB_1919 PF07085 DRTGG domain VPBB_1919 PF01515 Phosphate acetyl/butaryl transferase VPBB_1920 PF13194 Domain of unknown function (DUF4010) VPBB_1922 PF13409 Glutathione S-transferase, N-terminal domain VPBB_1923 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VPBB_1923 PF00005 ABC transporter VPBB_1924 PF00005 ABC transporter VPBB_1924 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VPBB_1925 PF12911 N-terminal TM domain of oligopeptide transport permease C VPBB_1925 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_1926 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_1927 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VPBB_1928 PF02391 MoaE protein VPBB_1929 PF02597 ThiS family VPBB_1930 PF01967 MoaC family VPBB_1932 PF00994 Probable molybdopterin binding domain VPBB_1933 PF06463 Molybdenum Cofactor Synthesis C VPBB_1933 PF04055 Radical SAM superfamily VPBB_1934 PF01933 Uncharacterised protein family UPF0052 VPBB_1935 PF01627 Hpt domain VPBB_1936 PF00072 Response regulator receiver domain VPBB_1936 PF00158 Sigma-54 interaction domain VPBB_1936 PF02954 Bacterial regulatory protein, Fis family VPBB_1937 PF04851 Type III restriction enzyme, res subunit VPBB_1937 PF02151 UvrB/uvrC motif VPBB_1937 PF17757 UvrB interaction domain VPBB_1937 PF12344 Ultra-violet resistance protein B VPBB_1937 PF00271 Helicase conserved C-terminal domain VPBB_1939 PF02508 Rnf-Nqr subunit, membrane protein VPBB_1940 PF04060 Putative Fe-S cluster VPBB_1941 PF12838 4Fe-4S dicluster domain VPBB_1941 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VPBB_1941 PF13375 RnfC Barrel sandwich hybrid domain VPBB_1941 PF10531 SLBB domain VPBB_1942 PF03116 NQR2, RnfD, RnfE family VPBB_1943 PF04205 FMN-binding domain VPBB_1944 PF02508 Rnf-Nqr subunit, membrane protein VPBB_1945 PF00633 Helix-hairpin-helix motif VPBB_1945 PF00730 HhH-GPD superfamily base excision DNA repair protein VPBB_1945 PF10576 Iron-sulfur binding domain of endonuclease III VPBB_1947 PF10952 Protein of unknown function (DUF2753) VPBB_1948 PF18393 MotY N-terminal domain VPBB_1948 PF00691 OmpA family VPBB_1949 PF00929 Exonuclease VPBB_1950 PF13726 Na+-H+ antiporter family VPBB_1950 PF03553 Na+/H+ antiporter family VPBB_1952 PF00462 Glutaredoxin VPBB_1953 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VPBB_1953 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VPBB_1956 PF00465 Iron-containing alcohol dehydrogenase VPBB_1956 PF00171 Aldehyde dehydrogenase family VPBB_1957 PF01914 MarC family integral membrane protein VPBB_1958 PF00027 Cyclic nucleotide-binding domain VPBB_1958 PF00520 Ion transport protein VPBB_1959 PF01118 Semialdehyde dehydrogenase, NAD binding domain VPBB_1959 PF02774 Semialdehyde dehydrogenase, dimerisation domain VPBB_1960 PF03553 Na+/H+ antiporter family VPBB_1963 PF04245 37-kD nucleoid-associated bacterial protein VPBB_1964 PF07208 Protein of unknown function (DUF1414) VPBB_1965 PF00884 Sulfatase VPBB_1965 PF11893 Domain of unknown function (DUF3413) VPBB_1966 PF00850 Histone deacetylase domain VPBB_1967 PF00106 short chain dehydrogenase VPBB_1969 PF01131 DNA topoisomerase VPBB_1969 PF01751 Toprim domain VPBB_1970 PF00881 Nitroreductase family VPBB_1971 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VPBB_1971 PF07992 Pyridine nucleotide-disulphide oxidoreductase VPBB_1972 PF01343 Peptidase family S49 VPBB_1973 PF00710 Asparaginase, N-terminal VPBB_1973 PF17763 Glutaminase/Asparaginase C-terminal domain VPBB_1974 PF07023 Protein of unknown function (DUF1315) VPBB_1976 PF01641 SelR domain VPBB_1978 PF01263 Aldose 1-epimerase VPBB_1979 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_1979 PF02743 Cache domain VPBB_1979 PF00672 HAMP domain VPBB_1980 PF13847 Methyltransferase domain VPBB_1983 PF00245 Alkaline phosphatase VPBB_1985 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VPBB_1986 PF03992 Antibiotic biosynthesis monooxygenase VPBB_1987 PF00924 Mechanosensitive ion channel VPBB_1987 PF05552 Conserved TM helix VPBB_1988 PF03692 Putative zinc- or iron-chelating domain VPBB_1989 PF04226 Transglycosylase associated protein VPBB_1990 PF03692 Putative zinc- or iron-chelating domain VPBB_1992 PF03313 Serine dehydratase alpha chain VPBB_1993 PF01042 Endoribonuclease L-PSP VPBB_1995 PF00230 Major intrinsic protein VPBB_1996 PF02132 RecR protein VPBB_1996 PF13662 Toprim domain VPBB_1997 PF02575 YbaB/EbfC DNA-binding family VPBB_1998 PF12169 DNA polymerase III subunits gamma and tau domain III VPBB_1998 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding VPBB_1998 PF12170 DNA polymerase III tau subunit V interacting with alpha VPBB_1999 PF00156 Phosphoribosyl transferase domain VPBB_2000 PF04304 Protein of unknown function (DUF454) VPBB_2002 PF00072 Response regulator receiver domain VPBB_2003 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_2003 PF03466 LysR substrate binding domain VPBB_2004 PF00156 Phosphoribosyl transferase domain VPBB_2005 PF02674 Colicin V production protein VPBB_2006 PF05036 Sporulation related domain VPBB_2007 PF02875 Mur ligase family, glutamate ligase domain VPBB_2007 PF08245 Mur ligase middle domain VPBB_2008 PF01039 Carboxyl transferase domain VPBB_2008 PF17848 Acetyl-coA carboxylase zinc finger domain VPBB_2009 PF01416 tRNA pseudouridine synthase VPBB_2011 PF02774 Semialdehyde dehydrogenase, dimerisation domain VPBB_2011 PF01118 Semialdehyde dehydrogenase, NAD binding domain VPBB_2012 PF11890 Domain of unknown function (DUF3410) VPBB_2012 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VPBB_2012 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VPBB_2013 PF02801 Beta-ketoacyl synthase, C-terminal domain VPBB_2013 PF00109 Beta-ketoacyl synthase, N-terminal domain VPBB_2014 PF01266 FAD dependent oxidoreductase VPBB_2014 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VPBB_2015 PF03358 NADPH-dependent FMN reductase VPBB_2016 PF08891 YfcL protein VPBB_2017 PF04315 Elongation factor P hydroxylase VPBB_2019 PF03458 UPF0126 domain VPBB_2020 PF01264 Chorismate synthase VPBB_2021 PF05175 Methyltransferase small domain VPBB_2022 PF01713 Smr domain VPBB_2023 PF00300 Histidine phosphatase superfamily (branch 1) VPBB_2024 PF16187 Middle or third domain of peptidase_M16 VPBB_2024 PF00675 Insulinase (Peptidase family M16) VPBB_2024 PF05193 Peptidase M16 inactive domain VPBB_2026 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VPBB_2026 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VPBB_2026 PF00378 Enoyl-CoA hydratase/isomerase VPBB_2027 PF00108 Thiolase, N-terminal domain VPBB_2027 PF02803 Thiolase, C-terminal domain VPBB_2030 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VPBB_2031 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VPBB_2032 PF04333 MlaA lipoprotein VPBB_2034 PF03918 Cytochrome C biogenesis protein VPBB_2035 PF08534 Redoxin VPBB_2036 PF01578 Cytochrome C assembly protein VPBB_2036 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VPBB_2037 PF03100 CcmE VPBB_2038 PF04995 Heme exporter protein D (CcmD) VPBB_2039 PF01578 Cytochrome C assembly protein VPBB_2040 PF03379 CcmB protein VPBB_2041 PF00005 ABC transporter VPBB_2043 PF01584 CheW-like domain VPBB_2045 PF13614 AAA domain VPBB_2046 PF01339 CheB methylesterase VPBB_2046 PF00072 Response regulator receiver domain VPBB_2047 PF01584 CheW-like domain VPBB_2047 PF02895 Signal transducing histidine kinase, homodimeric domain VPBB_2047 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_2047 PF01627 Hpt domain VPBB_2047 PF07194 P2 response regulator binding domain VPBB_2048 PF04344 Chemotaxis phosphatase, CheZ VPBB_2050 PF04545 Sigma-70, region 4 VPBB_2050 PF04542 Sigma-70 region 2 VPBB_2050 PF04539 Sigma-70 region 3 VPBB_2051 PF10609 NUBPL iron-transfer P-loop NTPase VPBB_2052 PF00448 SRP54-type protein, GTPase domain VPBB_2053 PF00771 FHIPEP family VPBB_2054 PF01312 FlhB HrpN YscU SpaS Family VPBB_2055 PF01311 Bacterial export proteins, family 1 VPBB_2056 PF01313 Bacterial export proteins, family 3 VPBB_2057 PF00813 FliP family VPBB_2058 PF04347 Flagellar biosynthesis protein, FliO VPBB_2059 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VPBB_2060 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VPBB_2060 PF02154 Flagellar motor switch protein FliM VPBB_2064 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VPBB_2064 PF18269 T3SS EscN ATPase C-terminal domain VPBB_2066 PF14841 FliG middle domain VPBB_2066 PF14842 FliG N-terminal domain VPBB_2066 PF01706 FliG C-terminal domain VPBB_2067 PF08345 Flagellar M-ring protein C-terminal VPBB_2067 PF01514 Secretory protein of YscJ/FliF family VPBB_2068 PF02049 Flagellar hook-basal body complex protein FliE VPBB_2069 PF00158 Sigma-54 interaction domain VPBB_2069 PF02954 Bacterial regulatory protein, Fis family VPBB_2069 PF00072 Response regulator receiver domain VPBB_2071 PF01590 GAF domain VPBB_2071 PF02954 Bacterial regulatory protein, Fis family VPBB_2071 PF00158 Sigma-54 interaction domain VPBB_2072 PF02561 Flagellar protein FliS VPBB_2074 PF07195 Flagellar hook-associated protein 2 C-terminus VPBB_2074 PF07196 Flagellin hook IN motif VPBB_2074 PF02465 Flagellar hook-associated protein 2 N-terminus VPBB_2075 PF03646 FlaG protein VPBB_2076 PF00700 Bacterial flagellin C-terminal helical region VPBB_2076 PF00669 Bacterial flagellin N-terminal helical region VPBB_2076 PF07196 Flagellin hook IN motif VPBB_2077 PF00700 Bacterial flagellin C-terminal helical region VPBB_2077 PF00669 Bacterial flagellin N-terminal helical region VPBB_2077 PF07196 Flagellin hook IN motif VPBB_2078 PF07196 Flagellin hook IN motif VPBB_2078 PF00700 Bacterial flagellin C-terminal helical region VPBB_2078 PF00669 Bacterial flagellin N-terminal helical region VPBB_2079 PF04261 Dyp-type peroxidase family VPBB_2080 PF11143 Protein of unknown function (DUF2919) VPBB_2084 PF03960 ArsC family VPBB_2085 PF01546 Peptidase family M20/M25/M40 VPBB_2085 PF07687 Peptidase dimerisation domain VPBB_2089 PF00701 Dihydrodipicolinate synthetase family VPBB_2090 PF01842 ACT domain VPBB_2091 PF00578 AhpC/TSA family VPBB_2092 PF01594 AI-2E family transporter VPBB_2094 PF13181 Tetratricopeptide repeat VPBB_2094 PF01435 Peptidase family M48 VPBB_2095 PF03960 ArsC family VPBB_2096 PF03358 NADPH-dependent FMN reductase VPBB_2099 PF00860 Permease family VPBB_2101 PF02769 AIR synthase related protein, C-terminal domain VPBB_2101 PF00586 AIR synthase related protein, N-terminal domain VPBB_2102 PF00551 Formyl transferase VPBB_2103 PF13230 Glutamine amidotransferases class-II VPBB_2104 PF13580 SIS domain VPBB_2105 PF09317 Domain of unknown function (DUF1974) VPBB_2105 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VPBB_2105 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VPBB_2105 PF02770 Acyl-CoA dehydrogenase, middle domain VPBB_2106 PF00916 Sulfate permease family VPBB_2106 PF01740 STAS domain VPBB_2108 PF00929 Exonuclease VPBB_2109 PF00075 RNase H VPBB_2110 PF08241 Methyltransferase domain VPBB_2112 PF01476 LysM domain VPBB_2112 PF01464 Transglycosylase SLT domain VPBB_2114 PF03372 Endonuclease/Exonuclease/phosphatase family VPBB_2115 PF00543 Nitrogen regulatory protein P-II VPBB_2116 PF00034 Cytochrome c VPBB_2117 PF01171 PP-loop family VPBB_2117 PF09179 TilS substrate binding domain VPBB_2117 PF11734 TilS substrate C-terminal domain VPBB_2119 PF01336 OB-fold nucleic acid binding domain VPBB_2119 PF02811 PHP domain VPBB_2119 PF07733 Bacterial DNA polymerase III alpha NTPase domain VPBB_2119 PF14579 Helix-hairpin-helix motif VPBB_2119 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VPBB_2120 PF01351 Ribonuclease HII VPBB_2121 PF02684 Lipid-A-disaccharide synthetase VPBB_2122 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 VPBB_2122 PF00132 Bacterial transferase hexapeptide (six repeats) VPBB_2123 PF07977 FabA-like domain VPBB_2124 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VPBB_2124 PF00132 Bacterial transferase hexapeptide (six repeats) VPBB_2125 PF03938 Outer membrane protein (OmpH-like) VPBB_2126 PF07244 Surface antigen variable number repeat VPBB_2126 PF01103 Surface antigen VPBB_2127 PF17820 PDZ domain VPBB_2127 PF02163 Peptidase family M50 VPBB_2128 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase VPBB_2128 PF13288 DXP reductoisomerase C-terminal domain VPBB_2128 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain VPBB_2130 PF01255 Putative undecaprenyl diphosphate synthase VPBB_2131 PF01765 Ribosome recycling factor VPBB_2132 PF00696 Amino acid kinase family VPBB_2133 PF00889 Elongation factor TS VPBB_2134 PF00318 Ribosomal protein S2 VPBB_2135 PF00557 Metallopeptidase family M24 VPBB_2136 PF01966 HD domain VPBB_2136 PF08335 GlnD PII-uridylyltransferase VPBB_2136 PF01842 ACT domain VPBB_2136 PF01909 Nucleotidyltransferase domain VPBB_2137 PF11944 Protein of unknown function (DUF3461) VPBB_2138 PF00849 RNA pseudouridylate synthase VPBB_2139 PF04287 tRNA pseudouridine synthase C VPBB_2143 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 VPBB_2144 PF03806 AbgT putative transporter family VPBB_2146 PF01197 Ribosomal protein L31 VPBB_2147 PF18389 TrmO C-terminal domain VPBB_2147 PF01980 tRNA-methyltransferase O VPBB_2148 PF03129 Anticodon binding domain VPBB_2148 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VPBB_2148 PF04073 Aminoacyl-tRNA editing domain VPBB_2150 PF06786 Uncharacterised protein family (UPF0253) VPBB_2152 PF00209 Sodium:neurotransmitter symporter family VPBB_2155 PF03449 Transcription elongation factor, N-terminal VPBB_2155 PF01272 Transcription elongation factor, GreA/GreB, C-term VPBB_2156 PF00270 DEAD/DEAH box helicase VPBB_2156 PF09382 RQC domain VPBB_2156 PF16124 RecQ zinc-binding VPBB_2156 PF00570 HRDC domain VPBB_2156 PF00271 Helicase conserved C-terminal domain VPBB_2157 PF00817 impB/mucB/samB family VPBB_2157 PF11799 impB/mucB/samB family C-terminal domain VPBB_2157 PF11798 IMS family HHH motif VPBB_2158 PF11799 impB/mucB/samB family C-terminal domain VPBB_2158 PF00817 impB/mucB/samB family VPBB_2158 PF11798 IMS family HHH motif VPBB_2161 PF12161 HsdM N-terminal domain VPBB_2161 PF02384 N-6 DNA Methylase VPBB_2165 PF18766 SWI2/SNF2 ATPase VPBB_2165 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VPBB_2165 PF11867 Domain of unknown function (DUF3387) VPBB_2168 PF14490 Helix-hairpin-helix containing domain VPBB_2168 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain VPBB_2168 PF13538 UvrD-like helicase C-terminal domain VPBB_2175 PF02424 ApbE family VPBB_2176 PF00175 Oxidoreductase NAD-binding domain VPBB_2176 PF00111 2Fe-2S iron-sulfur cluster binding domain VPBB_2176 PF00970 Oxidoreductase FAD-binding domain VPBB_2177 PF02508 Rnf-Nqr subunit, membrane protein VPBB_2178 PF02508 Rnf-Nqr subunit, membrane protein VPBB_2179 PF04205 FMN-binding domain VPBB_2180 PF03116 NQR2, RnfD, RnfE family VPBB_2181 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) VPBB_2181 PF11973 NQRA C-terminal domain VPBB_2182 PF01722 BolA-like protein VPBB_2183 PF05175 Methyltransferase small domain VPBB_2184 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VPBB_2184 PF03923 Uncharacterized lipoprotein VPBB_2185 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VPBB_2186 PF07690 Major Facilitator Superfamily VPBB_2188 PF04545 Sigma-70, region 4 VPBB_2188 PF04542 Sigma-70 region 2 VPBB_2191 PF03502 Nucleoside-specific channel-forming protein, Tsx VPBB_2192 PF02558 Ketopantoate reductase PanE/ApbA VPBB_2192 PF08546 Ketopantoate reductase PanE/ApbA C terminal VPBB_2193 PF01965 DJ-1/PfpI family VPBB_2194 PF00266 Aminotransferase class-V VPBB_2195 PF00990 Diguanylate cyclase, GGDEF domain VPBB_2195 PF17158 Membrane-associated sensor, integral membrane domain VPBB_2196 PF02657 Fe-S metabolism associated domain VPBB_2197 PF00899 ThiF family VPBB_2198 PF03562 MltA specific insert domain VPBB_2198 PF06725 3D domain VPBB_2200 PF00696 Amino acid kinase family VPBB_2200 PF00583 Acetyltransferase (GNAT) family VPBB_2202 PF13538 UvrD-like helicase C-terminal domain VPBB_2203 PF12705 PD-(D/E)XK nuclease superfamily VPBB_2203 PF00580 UvrD/REP helicase N-terminal domain VPBB_2203 PF13361 UvrD-like helicase C-terminal domain VPBB_2204 PF17946 RecC C-terminal domain VPBB_2205 PF11893 Domain of unknown function (DUF3413) VPBB_2205 PF00884 Sulfatase VPBB_2207 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_2207 PF03466 LysR substrate binding domain VPBB_2208 PF07130 YebG protein VPBB_2209 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle VPBB_2209 PF14602 Hexapeptide repeat of succinyl-transferase VPBB_2210 PF03009 Glycerophosphoryl diester phosphodiesterase family VPBB_2211 PF07690 Major Facilitator Superfamily VPBB_2213 PF00230 Major intrinsic protein VPBB_2214 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VPBB_2214 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VPBB_2215 PF08220 DeoR-like helix-turn-helix domain VPBB_2215 PF00455 DeoR C terminal sensor domain VPBB_2216 PF16901 C-terminal domain of alpha-glycerophosphate oxidase VPBB_2216 PF01266 FAD dependent oxidoreductase VPBB_2217 PF01544 CorA-like Mg2+ transporter protein VPBB_2221 PF01588 Putative tRNA binding domain VPBB_2222 PF00356 Bacterial regulatory proteins, lacI family VPBB_2223 PF02811 PHP domain VPBB_2223 PF00929 Exonuclease VPBB_2223 PF07733 Bacterial DNA polymerase III alpha NTPase domain VPBB_2223 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VPBB_2223 PF14579 Helix-hairpin-helix motif VPBB_2225 PF00474 Sodium:solute symporter family VPBB_2226 PF01263 Aldose 1-epimerase VPBB_2227 PF08544 GHMP kinases C terminal VPBB_2227 PF00288 GHMP kinases N terminal domain VPBB_2227 PF10509 Galactokinase galactose-binding signature VPBB_2228 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VPBB_2228 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VPBB_2229 PF16363 GDP-mannose 4,6 dehydratase VPBB_2230 PF00356 Bacterial regulatory proteins, lacI family VPBB_2231 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VPBB_2231 PF16353 Domain of unknown function(DUF4981) VPBB_2231 PF00703 Glycosyl hydrolases family 2 VPBB_2231 PF02929 Beta galactosidase small chain VPBB_2231 PF02837 Glycosyl hydrolases family 2, sugar binding domain VPBB_2232 PF04074 YhcH/YjgK/YiaL VPBB_2233 PF13520 Amino acid permease VPBB_2234 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_2234 PF03466 LysR substrate binding domain VPBB_2240 PF00437 Type II/IV secretion system protein VPBB_2246 PF00263 Bacterial type II and III secretion system protein VPBB_2246 PF13629 Pilus formation protein N terminal region VPBB_2246 PF04972 BON domain VPBB_2250 PF02805 Metal binding domain of Ada VPBB_2250 PF12833 Helix-turn-helix domain VPBB_2251 PF00501 AMP-binding enzyme VPBB_2253 PF03466 LysR substrate binding domain VPBB_2253 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_2254 PF00009 Elongation factor Tu GTP binding domain VPBB_2254 PF00679 Elongation factor G C-terminus VPBB_2254 PF14492 Elongation Factor G, domain II VPBB_2254 PF03764 Elongation factor G, domain IV VPBB_2254 PF03144 Elongation factor Tu domain 2 VPBB_2255 PF18073 Rubredoxin metal binding domain VPBB_2257 PF18429 Domain of unknown function (DUF5609) VPBB_2259 PF01048 Phosphorylase superfamily VPBB_2260 PF01676 Metalloenzyme superfamily VPBB_2261 PF02885 Glycosyl transferase family, helical bundle domain VPBB_2261 PF00591 Glycosyl transferase family, a/b domain VPBB_2261 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain VPBB_2262 PF01791 DeoC/LacD family aldolase VPBB_2263 PF07670 Nucleoside recognition VPBB_2263 PF07662 Na+ dependent nucleoside transporter C-terminus VPBB_2263 PF01773 Na+ dependent nucleoside transporter N-terminus VPBB_2264 PF01026 TatD related DNase VPBB_2266 PF00009 Elongation factor Tu GTP binding domain VPBB_2266 PF03144 Elongation factor Tu domain 2 VPBB_2266 PF16658 Class II release factor RF3, C-terminal domain VPBB_2270 PF13508 Acetyltransferase (GNAT) domain VPBB_2272 PF00563 EAL domain VPBB_2272 PF00990 Diguanylate cyclase, GGDEF domain VPBB_2272 PF03707 Bacterial signalling protein N terminal repeat VPBB_2275 PF01554 MatE VPBB_2277 PF07719 Tetratricopeptide repeat VPBB_2277 PF13181 Tetratricopeptide repeat VPBB_2278 PF00013 KH domain VPBB_2278 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain VPBB_2278 PF03725 3' exoribonuclease family, domain 2 VPBB_2278 PF00575 S1 RNA binding domain VPBB_2278 PF01138 3' exoribonuclease family, domain 1 VPBB_2279 PF00312 Ribosomal protein S15 VPBB_2280 PF09157 Pseudouridine synthase II TruB, C-terminal VPBB_2280 PF16198 tRNA pseudouridylate synthase B C-terminal domain VPBB_2280 PF01509 TruB family pseudouridylate synthase (N terminal domain) VPBB_2281 PF02033 Ribosome-binding factor A VPBB_2282 PF00009 Elongation factor Tu GTP binding domain VPBB_2282 PF11987 Translation-initiation factor 2 VPBB_2282 PF08364 Bacterial translation initiation factor IF-2 associated region VPBB_2282 PF04760 Translation initiation factor IF-2, N-terminal region VPBB_2283 PF13184 NusA-like KH domain VPBB_2283 PF00575 S1 RNA binding domain VPBB_2283 PF08529 NusA N-terminal domain VPBB_2284 PF02576 RimP N-terminal domain VPBB_2284 PF17384 RimP C-terminal SH3 domain VPBB_2285 PF03840 Preprotein translocase SecG subunit VPBB_2286 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VPBB_2286 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VPBB_2286 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VPBB_2286 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VPBB_2287 PF00809 Pterin binding enzyme VPBB_2288 PF06480 FtsH Extracellular VPBB_2288 PF01434 Peptidase family M41 VPBB_2288 PF17862 AAA+ lid domain VPBB_2288 PF00004 ATPase family associated with various cellular activities (AAA) VPBB_2289 PF01728 FtsJ-like methyltransferase VPBB_2290 PF01985 CRS1 / YhbY (CRM) domain VPBB_2291 PF01272 Transcription elongation factor, GreA/GreB, C-term VPBB_2291 PF03449 Transcription elongation factor, N-terminal VPBB_2292 PF13609 Gram-negative porin VPBB_2293 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family VPBB_2295 PF00579 tRNA synthetases class I (W and Y) VPBB_2296 PF01551 Peptidase family M23 VPBB_2296 PF01476 LysM domain VPBB_2296 PF08525 Opacity-associated protein A N-terminal motif VPBB_2297 PF00873 AcrB/AcrD/AcrF family VPBB_2299 PF01521 Iron-sulphur cluster biosynthesis VPBB_2300 PF00202 Aminotransferase class-III VPBB_2302 PF01594 AI-2E family transporter VPBB_2303 PF08468 Methyltransferase small domain N-terminal VPBB_2303 PF05175 Methyltransferase small domain VPBB_2304 PF00512 His Kinase A (phospho-acceptor) domain VPBB_2304 PF00072 Response regulator receiver domain VPBB_2304 PF00497 Bacterial extracellular solute-binding proteins, family 3 VPBB_2304 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_2305 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VPBB_2306 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_2307 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_2307 PF12911 N-terminal TM domain of oligopeptide transport permease C VPBB_2308 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VPBB_2308 PF00005 ABC transporter VPBB_2309 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VPBB_2309 PF00005 ABC transporter VPBB_2311 PF01869 BadF/BadG/BcrA/BcrD ATPase family VPBB_2312 PF02838 Glycosyl hydrolase family 20, domain 2 VPBB_2312 PF00728 Glycosyl hydrolase family 20, catalytic domain VPBB_2313 PF06165 Glycosyltransferase family 36 VPBB_2313 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain VPBB_2314 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VPBB_2314 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VPBB_2314 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VPBB_2314 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VPBB_2315 PF00005 ABC transporter VPBB_2315 PF08402 TOBE domain VPBB_2317 PF13416 Bacterial extracellular solute-binding protein VPBB_2318 PF00909 Ammonium Transporter Family VPBB_2319 PF00543 Nitrogen regulatory protein P-II VPBB_2320 PF06062 Uncharacterised protein family (UPF0231) VPBB_2321 PF11791 Aconitate B N-terminal domain VPBB_2321 PF06434 Aconitate hydratase 2 N-terminus VPBB_2321 PF00330 Aconitase family (aconitate hydratase) VPBB_2322 PF01734 Patatin-like phospholipase VPBB_2323 PF00912 Transglycosylase VPBB_2323 PF00905 Penicillin binding protein transpeptidase domain VPBB_2323 PF14814 Bifunctional transglycosylase second domain VPBB_2324 PF04408 Helicase associated domain (HA2) VPBB_2324 PF08482 ATP-dependent helicase C-terminal VPBB_2324 PF00271 Helicase conserved C-terminal domain VPBB_2324 PF00270 DEAD/DEAH box helicase VPBB_2325 PF03749 Sugar fermentation stimulation protein RE domain VPBB_2325 PF17746 SfsA N-terminal OB domain VPBB_2326 PF01258 Prokaryotic dksA/traR C4-type zinc finger VPBB_2328 PF12627 Probable RNA and SrmB- binding site of polymerase A VPBB_2328 PF12626 Polymerase A arginine-rich C-terminus VPBB_2328 PF01743 Poly A polymerase head domain VPBB_2329 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VPBB_2330 PF02548 Ketopantoate hydroxymethyltransferase VPBB_2331 PF02569 Pantoate-beta-alanine ligase VPBB_2332 PF03279 Bacterial lipid A biosynthesis acyltransferase VPBB_2333 PF01061 ABC-2 type transporter VPBB_2334 PF00005 ABC transporter VPBB_2335 PF00916 Sulfate permease family VPBB_2335 PF01740 STAS domain VPBB_2336 PF00484 Carbonic anhydrase VPBB_2337 PF00156 Phosphoribosyl transferase domain VPBB_2338 PF00440 Bacterial regulatory proteins, tetR family VPBB_2339 PF07992 Pyridine nucleotide-disulphide oxidoreductase VPBB_2339 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VPBB_2340 PF02817 e3 binding domain VPBB_2340 PF00364 Biotin-requiring enzyme VPBB_2340 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VPBB_2341 PF00456 Transketolase, thiamine diphosphate binding domain VPBB_2341 PF17831 Pyruvate dehydrogenase E1 component middle domain VPBB_2342 PF07729 FCD domain VPBB_2342 PF00392 Bacterial regulatory proteins, gntR family VPBB_2343 PF01510 N-acetylmuramoyl-L-alanine amidase VPBB_2344 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain VPBB_2344 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain VPBB_2345 PF07963 Prokaryotic N-terminal methylation motif VPBB_2345 PF00114 Pilin (bacterial filament) VPBB_2346 PF00437 Type II/IV secretion system protein VPBB_2346 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VPBB_2347 PF00482 Type II secretion system (T2SS), protein F VPBB_2348 PF01478 Type IV leader peptidase family VPBB_2348 PF06750 Bacterial Peptidase A24 N-terminal domain VPBB_2349 PF01121 Dephospho-CoA kinase VPBB_2350 PF07072 Cell division protein VPBB_2351 PF03884 DNA gyrase inhibitor YacG VPBB_2352 PF01245 Ribosomal protein L19 VPBB_2353 PF01746 tRNA (Guanine-1)-methyltransferase VPBB_2354 PF01782 RimM N-terminal domain VPBB_2354 PF05239 PRC-barrel domain VPBB_2355 PF00886 Ribosomal protein S16 VPBB_2356 PF00448 SRP54-type protein, GTPase domain VPBB_2356 PF02881 SRP54-type protein, helical bundle domain VPBB_2356 PF02978 Signal peptide binding domain VPBB_2357 PF01578 Cytochrome C assembly protein VPBB_2358 PF03471 Transporter associated domain VPBB_2358 PF00571 CBS domain VPBB_2358 PF01595 Cyclin M transmembrane N-terminal domain VPBB_2359 PF02664 S-Ribosylhomocysteinase (LuxS) VPBB_2361 PF04262 Glutamate-cysteine ligase VPBB_2362 PF05193 Peptidase M16 inactive domain VPBB_2362 PF00675 Insulinase (Peptidase family M16) VPBB_2363 PF09335 SNARE associated Golgi protein VPBB_2364 PF00107 Zinc-binding dehydrogenase VPBB_2364 PF08240 Alcohol dehydrogenase GroES-like domain VPBB_2365 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VPBB_2366 PF02436 Conserved carboxylase domain VPBB_2366 PF00682 HMGL-like VPBB_2366 PF00364 Biotin-requiring enzyme VPBB_2370 PF02599 Global regulator protein family VPBB_2371 PF01842 ACT domain VPBB_2371 PF00696 Amino acid kinase family VPBB_2371 PF13840 ACT domain VPBB_2372 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VPBB_2372 PF01411 tRNA synthetases class II (A) VPBB_2372 PF02272 DHHA1 domain VPBB_2373 PF02631 RecX family VPBB_2374 PF00154 recA bacterial DNA recombination protein VPBB_2375 PF02464 Competence-damaged protein VPBB_2376 PF05188 MutS domain II VPBB_2376 PF05192 MutS domain III VPBB_2376 PF05190 MutS family domain IV VPBB_2376 PF01624 MutS domain I VPBB_2376 PF00488 MutS domain V VPBB_2377 PF04539 Sigma-70 region 3 VPBB_2377 PF04542 Sigma-70 region 2 VPBB_2377 PF00140 Sigma-70 factor, region 1.2 VPBB_2377 PF04545 Sigma-70, region 4 VPBB_2378 PF01476 LysM domain VPBB_2378 PF01551 Peptidase family M23 VPBB_2380 PF01975 Survival protein SurE VPBB_2381 PF01142 tRNA pseudouridine synthase D (TruD) VPBB_2382 PF02542 YgbB family VPBB_2383 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VPBB_2385 PF00113 Enolase, C-terminal TIM barrel domain VPBB_2385 PF03952 Enolase, N-terminal domain VPBB_2386 PF06418 CTP synthase N-terminus VPBB_2386 PF00117 Glutamine amidotransferase class-I VPBB_2387 PF03819 MazG nucleotide pyrophosphohydrolase domain VPBB_2388 PF02824 TGS domain VPBB_2388 PF13291 ACT domain VPBB_2388 PF04607 Region found in RelA / SpoT proteins VPBB_2389 PF05958 tRNA (Uracil-5-)-methyltransferase VPBB_2389 PF01938 TRAM domain VPBB_2390 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VPBB_2390 PF00072 Response regulator receiver domain VPBB_2390 PF01627 Hpt domain VPBB_2390 PF00512 His Kinase A (phospho-acceptor) domain VPBB_2390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_2390 PF00672 HAMP domain VPBB_2391 PF01648 4'-phosphopantetheinyl transferase superfamily VPBB_2392 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ VPBB_2393 PF11967 Recombination protein O N terminal VPBB_2393 PF02565 Recombination protein O C terminal VPBB_2394 PF01926 50S ribosome-binding GTPase VPBB_2394 PF07650 KH domain VPBB_2395 PF00035 Double-stranded RNA binding motif VPBB_2395 PF14622 Ribonuclease-III-like VPBB_2396 PF10502 Signal peptidase, peptidase S26 VPBB_2397 PF00009 Elongation factor Tu GTP binding domain VPBB_2397 PF03144 Elongation factor Tu domain 2 VPBB_2397 PF06421 GTP-binding protein LepA C-terminus VPBB_2397 PF00679 Elongation factor G C-terminus VPBB_2399 PF17188 MucB/RseB C-terminal domain VPBB_2399 PF03888 MucB/RseB N-terminal domain VPBB_2400 PF03873 Anti sigma-E protein RseA, C-terminal domain VPBB_2400 PF03872 Anti sigma-E protein RseA, N-terminal domain VPBB_2401 PF08281 Sigma-70, region 4 VPBB_2401 PF04542 Sigma-70 region 2 VPBB_2402 PF00890 FAD binding domain VPBB_2402 PF02910 Fumarate reductase flavoprotein C-term VPBB_2404 PF03937 Flavinator of succinate dehydrogenase VPBB_2405 PF01571 Aminomethyltransferase folate-binding domain VPBB_2407 PF01494 FAD binding domain VPBB_2408 PF01494 FAD binding domain VPBB_2409 PF03695 Uncharacterised protein family (UPF0149) VPBB_2410 PF05164 Cell division protein ZapA VPBB_2411 PF01812 5-formyltetrahydrofolate cyclo-ligase family VPBB_2412 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VPBB_2413 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VPBB_2413 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VPBB_2413 PF01842 ACT domain VPBB_2414 PF04402 Protein of unknown function (DUF541) VPBB_2415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_2415 PF03466 LysR substrate binding domain VPBB_2416 PF01810 LysE type translocator VPBB_2417 PF04073 Aminoacyl-tRNA editing domain VPBB_2418 PF00924 Mechanosensitive ion channel VPBB_2418 PF05552 Conserved TM helix VPBB_2419 PF01116 Fructose-bisphosphate aldolase class-II VPBB_2420 PF00162 Phosphoglycerate kinase VPBB_2422 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VPBB_2422 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VPBB_2423 PF00593 TonB dependent receptor VPBB_2423 PF07715 TonB-dependent Receptor Plug Domain VPBB_2424 PF03466 LysR substrate binding domain VPBB_2424 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_2425 PF02779 Transketolase, pyrimidine binding domain VPBB_2425 PF00456 Transketolase, thiamine diphosphate binding domain VPBB_2425 PF02780 Transketolase, C-terminal domain VPBB_2426 PF02772 S-adenosylmethionine synthetase, central domain VPBB_2426 PF00438 S-adenosylmethionine synthetase, N-terminal domain VPBB_2426 PF02773 S-adenosylmethionine synthetase, C-terminal domain VPBB_2428 PF10263 SprT-like family VPBB_2428 PF17283 SprT-like zinc ribbon domain VPBB_2429 PF04231 Endonuclease I VPBB_2430 PF04452 RNA methyltransferase VPBB_2431 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VPBB_2431 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VPBB_2432 PF02622 Uncharacterized ACR, COG1678 VPBB_2433 PF03652 Holliday junction resolvase VPBB_2434 PF00437 Type II/IV secretion system protein VPBB_2435 PF00437 Type II/IV secretion system protein VPBB_2436 PF01168 Alanine racemase, N-terminal domain VPBB_2437 PF03807 NADP oxidoreductase coenzyme F420-dependent VPBB_2437 PF14748 Pyrroline-5-carboxylate reductase dimerisation VPBB_2438 PF02325 YGGT family VPBB_2439 PF02594 Uncharacterised ACR, YggU family COG1872 VPBB_2441 PF01725 Ham1 family VPBB_2442 PF04055 Radical SAM superfamily VPBB_2442 PF06969 HemN C-terminal domain VPBB_2443 PF04960 Glutaminase VPBB_2444 PF02086 D12 class N6 adenine-specific DNA methyltransferase VPBB_2445 PF02390 Putative methyltransferase VPBB_2446 PF00633 Helix-hairpin-helix motif VPBB_2446 PF00730 HhH-GPD superfamily base excision DNA repair protein VPBB_2446 PF14815 NUDIX domain VPBB_2447 PF04362 Bacterial Fe(2+) trafficking VPBB_2448 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VPBB_2448 PF01464 Transglycosylase SLT domain VPBB_2449 PF00672 HAMP domain VPBB_2449 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_2449 PF17200 Single Cache domain 2 VPBB_2450 PF00171 Aldehyde dehydrogenase family VPBB_2451 PF00072 Response regulator receiver domain VPBB_2452 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VPBB_2452 PF00356 Bacterial regulatory proteins, lacI family VPBB_2453 PF04794 YdjC-like protein VPBB_2454 PF02056 Family 4 glycosyl hydrolase VPBB_2454 PF11975 Family 4 glycosyl hydrolase C-terminal domain VPBB_2455 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit VPBB_2456 PF02378 Phosphotransferase system, EIIC VPBB_2458 PF01522 Polysaccharide deacetylase VPBB_2459 PF00106 short chain dehydrogenase VPBB_2460 PF10011 Predicted membrane protein (DUF2254) VPBB_2462 PF03739 Lipopolysaccharide export system permease LptF/LptG VPBB_2463 PF03739 Lipopolysaccharide export system permease LptF/LptG VPBB_2464 PF02789 Cytosol aminopeptidase family, N-terminal domain VPBB_2464 PF00883 Cytosol aminopeptidase family, catalytic domain VPBB_2465 PF04364 DNA polymerase III chi subunit, HolC VPBB_2466 PF00133 tRNA synthetases class I (I, L, M and V) VPBB_2466 PF08264 Anticodon-binding domain of tRNA VPBB_2466 PF10458 Valyl tRNA synthetase tRNA binding arm VPBB_2468 PF00583 Acetyltransferase (GNAT) family VPBB_2470 PF06877 Regulator of ribonuclease activity B VPBB_2473 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VPBB_2473 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VPBB_2474 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VPBB_2474 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VPBB_2475 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VPBB_2475 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VPBB_2476 PF01042 Endoribonuclease L-PSP VPBB_2477 PF01553 Acyltransferase VPBB_2478 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VPBB_2479 PF01722 BolA-like protein VPBB_2480 PF05494 MlaC protein VPBB_2481 PF02470 MlaD protein VPBB_2482 PF02405 Permease MlaE VPBB_2484 PF01699 Sodium/calcium exchanger protein VPBB_2485 PF01380 SIS domain VPBB_2485 PF00571 CBS domain VPBB_2487 PF03968 OstA-like protein VPBB_2488 PF12399 Branched-chain amino acid ATP-binding cassette transporter VPBB_2488 PF00005 ABC transporter VPBB_2489 PF00309 Sigma-54 factor, Activator interacting domain (AID) VPBB_2489 PF04552 Sigma-54, DNA binding domain VPBB_2489 PF04963 Sigma-54 factor, core binding domain VPBB_2490 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VPBB_2491 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VPBB_2492 PF03668 P-loop ATPase protein family VPBB_2493 PF00381 PTS HPr component phosphorylation site VPBB_2494 PF00571 CBS domain VPBB_2494 PF01769 Divalent cation transporter VPBB_2494 PF03448 MgtE intracellular N domain VPBB_2495 PF01523 Putative modulator of DNA gyrase VPBB_2496 PF04751 Protein of unknown function (DUF615) VPBB_2497 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VPBB_2497 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VPBB_2498 PF00849 RNA pseudouridylate synthase VPBB_2501 PF00271 Helicase conserved C-terminal domain VPBB_2501 PF18337 RapA N-terminal Tudor like domain VPBB_2501 PF18339 RapA N-terminal Tudor like domain 1 VPBB_2501 PF00176 SNF2 family N-terminal domain VPBB_2501 PF12137 RNA polymerase recycling family C-terminal VPBB_2502 PF13638 PIN domain VPBB_2502 PF02562 PhoH-like protein VPBB_2503 PF01523 Putative modulator of DNA gyrase VPBB_2504 PF00795 Carbon-nitrogen hydrolase VPBB_2505 PF13116 Protein of unknown function VPBB_2505 PF13502 AsmA-like C-terminal region VPBB_2506 PF00575 S1 RNA binding domain VPBB_2506 PF10150 Ribonuclease E/G family VPBB_2507 PF02545 Maf-like protein VPBB_2508 PF04093 rod shape-determining protein MreD VPBB_2509 PF04085 rod shape-determining protein MreC VPBB_2517 PF08334 Type II secretion system (T2SS), protein G VPBB_2517 PF07963 Prokaryotic N-terminal methylation motif VPBB_2520 PF00482 Type II secretion system (T2SS), protein F VPBB_2521 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VPBB_2521 PF00437 Type II/IV secretion system protein VPBB_2523 PF01471 Putative peptidoglycan binding domain VPBB_2523 PF13401 AAA domain VPBB_2524 PF07660 Secretin and TonB N terminus short domain VPBB_2524 PF00263 Bacterial type II and III secretion system protein VPBB_2524 PF11741 AMIN domain VPBB_2524 PF03958 Bacterial type II/III secretion system short domain VPBB_2528 PF00563 EAL domain VPBB_2528 PF17157 Gammaproteobacterial periplasmic sensor domain VPBB_2528 PF00990 Diguanylate cyclase, GGDEF domain VPBB_2529 PF00436 Single-strand binding protein family VPBB_2530 PF00196 Bacterial regulatory proteins, luxR family VPBB_2531 PF00483 Nucleotidyl transferase VPBB_2532 PF17760 UvrA interaction domain VPBB_2532 PF17755 UvrA DNA-binding domain VPBB_2532 PF00005 ABC transporter VPBB_2534 PF00266 Aminotransferase class-V VPBB_2536 PF00696 Amino acid kinase family VPBB_2536 PF01842 ACT domain VPBB_2537 PF02310 B12 binding domain VPBB_2537 PF02607 B12 binding domain VPBB_2537 PF02965 Vitamin B12 dependent methionine synthase, activation domain VPBB_2537 PF00809 Pterin binding enzyme VPBB_2537 PF02574 Homocysteine S-methyltransferase VPBB_2538 PF00999 Sodium/hydrogen exchanger family VPBB_2539 PF01507 Phosphoadenosine phosphosulfate reductase family VPBB_2540 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VPBB_2540 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VPBB_2541 PF00175 Oxidoreductase NAD-binding domain VPBB_2541 PF00258 Flavodoxin VPBB_2541 PF00667 FAD binding domain VPBB_2545 PF01207 Dihydrouridine synthase (Dus) VPBB_2546 PF02899 Phage integrase, N-terminal SAM-like domain VPBB_2546 PF00589 Phage integrase family VPBB_2551 PF06892 Phage regulatory protein CII (CP76) VPBB_2558 PF05840 Bacteriophage replication gene A protein (GPA) VPBB_2587 PF01475 Ferric uptake regulator family VPBB_2589 PF00342 Phosphoglucose isomerase VPBB_2590 PF01894 Uncharacterised protein family UPF0047 VPBB_2592 PF01168 Alanine racemase, N-terminal domain VPBB_2592 PF00842 Alanine racemase, C-terminal domain VPBB_2593 PF03796 DnaB-like helicase C terminal domain VPBB_2593 PF00772 DnaB-like helicase N terminal domain VPBB_2595 PF01281 Ribosomal protein L9, N-terminal domain VPBB_2595 PF03948 Ribosomal protein L9, C-terminal domain VPBB_2596 PF01084 Ribosomal protein S18 VPBB_2597 PF00436 Single-strand binding protein family VPBB_2598 PF01250 Ribosomal protein S6 VPBB_2599 PF00834 Ribulose-phosphate 3 epimerase family VPBB_2600 PF02086 D12 class N6 adenine-specific DNA methyltransferase VPBB_2602 PF01761 3-dehydroquinate synthase VPBB_2603 PF01202 Shikimate kinase VPBB_2604 PF11741 AMIN domain VPBB_2604 PF07660 Secretin and TonB N terminus short domain VPBB_2604 PF03958 Bacterial type II/III secretion system short domain VPBB_2604 PF00263 Bacterial type II and III secretion system protein VPBB_2609 PF17092 Penicillin-binding protein OB-like domain VPBB_2609 PF00905 Penicillin binding protein transpeptidase domain VPBB_2609 PF00912 Transglycosylase VPBB_2610 PF03466 LysR substrate binding domain VPBB_2610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_2611 PF08534 Redoxin VPBB_2611 PF00462 Glutaredoxin VPBB_2613 PF00206 Lyase VPBB_2613 PF00583 Acetyltransferase (GNAT) family VPBB_2613 PF14698 Argininosuccinate lyase C-terminal VPBB_2614 PF00764 Arginosuccinate synthase VPBB_2615 PF00696 Amino acid kinase family VPBB_2616 PF02774 Semialdehyde dehydrogenase, dimerisation domain VPBB_2616 PF01118 Semialdehyde dehydrogenase, NAD binding domain VPBB_2617 PF07687 Peptidase dimerisation domain VPBB_2617 PF01546 Peptidase family M20/M25/M40 VPBB_2618 PF00311 Phosphoenolpyruvate carboxylase VPBB_2620 PF02219 Methylenetetrahydrofolate reductase VPBB_2621 PF03447 Homoserine dehydrogenase, NAD binding domain VPBB_2621 PF00742 Homoserine dehydrogenase VPBB_2621 PF00696 Amino acid kinase family VPBB_2622 PF01053 Cys/Met metabolism PLP-dependent enzyme VPBB_2623 PF01340 Met Apo-repressor, MetJ VPBB_2624 PF00390 Malic enzyme, N-terminal domain VPBB_2624 PF03949 Malic enzyme, NAD binding domain VPBB_2625 PF00210 Ferritin-like domain VPBB_2626 PF03144 Elongation factor Tu domain 2 VPBB_2626 PF00009 Elongation factor Tu GTP binding domain VPBB_2626 PF03143 Elongation factor Tu C-terminal domain VPBB_2627 PF00679 Elongation factor G C-terminus VPBB_2627 PF03764 Elongation factor G, domain IV VPBB_2627 PF14492 Elongation Factor G, domain II VPBB_2627 PF03144 Elongation factor Tu domain 2 VPBB_2627 PF00009 Elongation factor Tu GTP binding domain VPBB_2628 PF00177 Ribosomal protein S7p/S5e VPBB_2629 PF00164 Ribosomal protein S12/S23 VPBB_2630 PF04077 DsrH like protein VPBB_2631 PF02635 DsrE/DsrF-like family VPBB_2632 PF02635 DsrE/DsrF-like family VPBB_2633 PF08348 YheO-like PAS domain VPBB_2633 PF13309 HTH domain VPBB_2634 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VPBB_2634 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VPBB_2636 PF04102 SlyX VPBB_2637 PF01112 Asparaginase VPBB_2638 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VPBB_2640 PF00999 Sodium/hydrogen exchanger family VPBB_2640 PF02254 TrkA-N domain VPBB_2641 PF02525 Flavodoxin-like fold VPBB_2642 PF00005 ABC transporter VPBB_2642 PF12848 ABC transporter VPBB_2644 PF00561 alpha/beta hydrolase fold VPBB_2645 PF06794 Uncharacterised protein family (UPF0270) VPBB_2646 PF00485 Phosphoribulokinase / Uridine kinase family VPBB_2647 PF13545 Crp-like helix-turn-helix domain VPBB_2647 PF00027 Cyclic nucleotide-binding domain VPBB_2649 PF00171 Aldehyde dehydrogenase family VPBB_2650 PF04958 Arginine N-succinyltransferase beta subunit VPBB_2651 PF00202 Aminotransferase class-III VPBB_2652 PF00117 Glutamine amidotransferase class-I VPBB_2655 PF00579 tRNA synthetases class I (W and Y) VPBB_2656 PF13419 Haloacid dehalogenase-like hydrolase VPBB_2657 PF08032 RNA 2'-O ribose methyltransferase substrate binding VPBB_2657 PF00588 SpoU rRNA Methylase family VPBB_2658 PF00773 RNB domain VPBB_2658 PF08206 Ribonuclease B OB domain VPBB_2658 PF08461 Ribonuclease R winged-helix domain VPBB_2658 PF17876 Cold shock domain VPBB_2658 PF00575 S1 RNA binding domain VPBB_2659 PF02082 Transcriptional regulator VPBB_2660 PF00175 Oxidoreductase NAD-binding domain VPBB_2660 PF00042 Globin VPBB_2660 PF00970 Oxidoreductase FAD-binding domain VPBB_2661 PF08238 Sel1 repeat VPBB_2662 PF00709 Adenylosuccinate synthetase VPBB_2663 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) VPBB_2664 PF01145 SPFH domain / Band 7 family VPBB_2665 PF01145 SPFH domain / Band 7 family VPBB_2665 PF12221 Bacterial membrane protein N terminal VPBB_2666 PF16360 GTP-binding GTPase Middle Region VPBB_2666 PF13167 GTP-binding GTPase N-terminal VPBB_2666 PF01926 50S ribosome-binding GTPase VPBB_2667 PF17209 Hfq protein VPBB_2669 PF01119 DNA mismatch repair protein, C-terminal domain VPBB_2669 PF08676 MutL C terminal dimerisation domain VPBB_2670 PF01520 N-acetylmuramoyl-L-alanine amidase VPBB_2671 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE VPBB_2672 PF08331 Domain of unknown function (DUF1730) VPBB_2673 PF00929 Exonuclease VPBB_2674 PF03193 RsgA GTPase VPBB_2675 PF02666 Phosphatidylserine decarboxylase VPBB_2676 PF00939 Sodium:sulfate symporter transmembrane region VPBB_2677 PF00672 HAMP domain VPBB_2677 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_2679 PF01676 Metalloenzyme superfamily VPBB_2679 PF06415 BPG-independent PGAM N-terminus (iPGM_N) VPBB_2681 PF00581 Rhodanese-like domain VPBB_2682 PF02556 Preprotein translocase subunit SecB VPBB_2683 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VPBB_2683 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VPBB_2684 PF00132 Bacterial transferase hexapeptide (six repeats) VPBB_2684 PF06426 Serine acetyltransferase, N-terminal VPBB_2685 PF01551 Peptidase family M23 VPBB_2687 PF08360 QacR-like protein, C-terminal region VPBB_2687 PF00440 Bacterial regulatory proteins, tetR family VPBB_2690 PF00890 FAD binding domain VPBB_2690 PF02910 Fumarate reductase flavoprotein C-term VPBB_2691 PF13085 2Fe-2S iron-sulfur cluster binding domain VPBB_2691 PF13183 4Fe-4S dicluster domain VPBB_2692 PF02300 Fumarate reductase subunit C VPBB_2693 PF02313 Fumarate reductase subunit D VPBB_2695 PF01132 Elongation factor P (EF-P) OB domain VPBB_2695 PF08207 Elongation factor P (EF-P) KOW-like domain VPBB_2695 PF09285 Elongation factor P, C-terminal VPBB_2698 PF01168 Alanine racemase, N-terminal domain VPBB_2698 PF00842 Alanine racemase, C-terminal domain VPBB_2699 PF02308 MgtC family VPBB_2701 PF00118 TCP-1/cpn60 chaperonin family VPBB_2702 PF00166 Chaperonin 10 Kd subunit VPBB_2704 PF01554 MatE VPBB_2705 PF00365 Phosphofructokinase VPBB_2706 PF01545 Cation efflux family VPBB_2706 PF16916 Dimerisation domain of Zinc Transporter VPBB_2708 PF00072 Response regulator receiver domain VPBB_2708 PF00486 Transcriptional regulatory protein, C terminal VPBB_2709 PF16527 Two-component sensor protein CpxA, periplasmic domain VPBB_2709 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_2709 PF00512 His Kinase A (phospho-acceptor) domain VPBB_2709 PF00672 HAMP domain VPBB_2711 PF00588 SpoU rRNA Methylase family VPBB_2712 PF04186 FxsA cytoplasmic membrane protein VPBB_2713 PF00206 Lyase VPBB_2713 PF10415 Fumarase C C-terminus VPBB_2714 PF03605 Anaerobic c4-dicarboxylate membrane transporter VPBB_2715 PF11412 Disulphide bond corrector protein DsbC VPBB_2715 PF02683 Cytochrome C biogenesis protein transmembrane region VPBB_2716 PF00196 Bacterial regulatory proteins, luxR family VPBB_2716 PF00072 Response regulator receiver domain VPBB_2717 PF00999 Sodium/hydrogen exchanger family VPBB_2717 PF03471 Transporter associated domain VPBB_2717 PF02080 TrkA-C domain VPBB_2719 PF00474 Sodium:solute symporter family VPBB_2722 PF00206 Lyase VPBB_2722 PF10415 Fumarase C C-terminus VPBB_2723 PF09308 LuxQ, periplasmic VPBB_2723 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_2723 PF00512 His Kinase A (phospho-acceptor) domain VPBB_2723 PF00072 Response regulator receiver domain VPBB_2724 PF12832 MFS_1 like family VPBB_2727 PF00501 AMP-binding enzyme VPBB_2727 PF13193 AMP-binding enzyme C-terminal domain VPBB_2727 PF16177 Acetyl-coenzyme A synthetase N-terminus VPBB_2728 PF01220 Dehydroquinase class II VPBB_2729 PF00364 Biotin-requiring enzyme VPBB_2730 PF02785 Biotin carboxylase C-terminal domain VPBB_2730 PF00289 Biotin carboxylase, N-terminal domain VPBB_2730 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VPBB_2732 PF01207 Dihydrouridine synthase (Dus) VPBB_2733 PF02954 Bacterial regulatory protein, Fis family VPBB_2735 PF12848 ABC transporter VPBB_2735 PF00005 ABC transporter VPBB_2736 PF05230 MASE2 domain VPBB_2736 PF00990 Diguanylate cyclase, GGDEF domain VPBB_2740 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VPBB_2740 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VPBB_2740 PF01276 Orn/Lys/Arg decarboxylase, major domain VPBB_2741 PF13520 Amino acid permease VPBB_2743 PF00486 Transcriptional regulatory protein, C terminal VPBB_2743 PF18500 CadC C-terminal domain 1 VPBB_2744 PF13411 MerR HTH family regulatory protein VPBB_2746 PF01808 AICARFT/IMPCHase bienzyme VPBB_2746 PF02142 MGS-like domain VPBB_2747 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VPBB_2747 PF02844 Phosphoribosylglycinamide synthetase, N domain VPBB_2747 PF02843 Phosphoribosylglycinamide synthetase, C domain VPBB_2749 PF00216 Bacterial DNA-binding protein VPBB_2750 PF00571 CBS domain VPBB_2750 PF01595 Cyclin M transmembrane N-terminal domain VPBB_2751 PF04222 Protein of unknown function (DUF416) VPBB_2752 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VPBB_2753 PF03167 Uracil DNA glycosylase superfamily VPBB_2754 PF01208 Uroporphyrinogen decarboxylase (URO-D) VPBB_2757 PF00293 NUDIX domain VPBB_2757 PF09297 NADH pyrophosphatase zinc ribbon domain VPBB_2758 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ VPBB_2759 PF04983 RNA polymerase Rpb1, domain 3 VPBB_2759 PF04997 RNA polymerase Rpb1, domain 1 VPBB_2759 PF00623 RNA polymerase Rpb1, domain 2 VPBB_2759 PF05000 RNA polymerase Rpb1, domain 4 VPBB_2759 PF04998 RNA polymerase Rpb1, domain 5 VPBB_2760 PF04560 RNA polymerase Rpb2, domain 7 VPBB_2760 PF04563 RNA polymerase beta subunit VPBB_2760 PF00562 RNA polymerase Rpb2, domain 6 VPBB_2760 PF04561 RNA polymerase Rpb2, domain 2 VPBB_2760 PF04565 RNA polymerase Rpb2, domain 3 VPBB_2760 PF10385 RNA polymerase beta subunit external 1 domain VPBB_2761 PF00542 Ribosomal protein L7/L12 C-terminal domain VPBB_2761 PF16320 Ribosomal protein L7/L12 dimerisation domain VPBB_2762 PF00466 Ribosomal protein L10 VPBB_2763 PF00687 Ribosomal protein L1p/L10e family VPBB_2764 PF03946 Ribosomal protein L11, N-terminal domain VPBB_2764 PF00298 Ribosomal protein L11, RNA binding domain VPBB_2765 PF02357 Transcription termination factor nusG VPBB_2765 PF00467 KOW motif VPBB_2766 PF00584 SecE/Sec61-gamma subunits of protein translocation complex VPBB_2767 PF00009 Elongation factor Tu GTP binding domain VPBB_2767 PF03144 Elongation factor Tu domain 2 VPBB_2767 PF03143 Elongation factor Tu C-terminal domain VPBB_2768 PF00485 Phosphoribulokinase / Uridine kinase family VPBB_2769 PF08279 HTH domain VPBB_2769 PF02237 Biotin protein ligase C terminal domain VPBB_2769 PF03099 Biotin/lipoate A/B protein ligase family VPBB_2770 PF01565 FAD binding domain VPBB_2770 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VPBB_2772 PF13091 PLD-like domain VPBB_2775 PF01177 Asp/Glu/Hydantoin racemase VPBB_2777 PF07715 TonB-dependent Receptor Plug Domain VPBB_2777 PF00593 TonB dependent receptor VPBB_2778 PF05958 tRNA (Uracil-5-)-methyltransferase VPBB_2780 PF00440 Bacterial regulatory proteins, tetR family VPBB_2781 PF07992 Pyridine nucleotide-disulphide oxidoreductase VPBB_2781 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VPBB_2782 PF01554 MatE VPBB_2783 PF04072 Leucine carboxyl methyltransferase VPBB_2784 PF00717 Peptidase S24-like VPBB_2784 PF01726 LexA DNA binding domain VPBB_2785 PF01553 Acyltransferase VPBB_2786 PF01040 UbiA prenyltransferase family VPBB_2787 PF04345 Chorismate lyase VPBB_2788 PF03748 Flagellar basal body-associated protein FliL VPBB_2789 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease VPBB_2789 PF01694 Rhomboid family VPBB_2790 PF00581 Rhodanese-like domain VPBB_2792 PF18075 FtsX extracellular domain VPBB_2793 PF00005 ABC transporter VPBB_2794 PF02881 SRP54-type protein, helical bundle domain VPBB_2794 PF00448 SRP54-type protein, GTPase domain VPBB_2797 PF01914 MarC family integral membrane protein VPBB_2807 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VPBB_2807 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VPBB_2808 PF01022 Bacterial regulatory protein, arsR family VPBB_2809 PF08668 HDOD domain VPBB_2809 PF00563 EAL domain VPBB_2810 PF01810 LysE type translocator VPBB_2811 PF12146 Serine aminopeptidase, S33 VPBB_2816 PF10442 FIST C domain VPBB_2816 PF00563 EAL domain VPBB_2816 PF08495 FIST N domain VPBB_2816 PF00990 Diguanylate cyclase, GGDEF domain VPBB_2817 PF13419 Haloacid dehalogenase-like hydrolase VPBB_2818 PF02899 Phage integrase, N-terminal SAM-like domain VPBB_2818 PF00589 Phage integrase family VPBB_2820 PF01678 Diaminopimelate epimerase VPBB_2821 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VPBB_2821 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VPBB_2823 PF01491 Frataxin-like domain VPBB_2824 PF12633 Adenylate cyclase NT domain VPBB_2824 PF01295 Adenylate cyclase, class-I VPBB_2825 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain VPBB_2825 PF03900 Porphobilinogen deaminase, C-terminal domain VPBB_2826 PF02602 Uroporphyrinogen-III synthase HemD VPBB_2827 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase VPBB_2828 PF07219 HemY protein N-terminus VPBB_2829 PF00175 Oxidoreductase NAD-binding domain VPBB_2830 PF00111 2Fe-2S iron-sulfur cluster binding domain VPBB_2831 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VPBB_2833 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VPBB_2833 PF07498 Rho termination factor, N-terminal domain VPBB_2833 PF07497 Rho termination factor, RNA-binding domain VPBB_2835 PF00271 Helicase conserved C-terminal domain VPBB_2835 PF00270 DEAD/DEAH box helicase VPBB_2836 PF02541 Ppx/GppA phosphatase family VPBB_2837 PF02592 Putative vitamin uptake transporter VPBB_2839 PF09382 RQC domain VPBB_2839 PF00271 Helicase conserved C-terminal domain VPBB_2839 PF16124 RecQ zinc-binding VPBB_2839 PF00270 DEAD/DEAH box helicase VPBB_2839 PF00570 HRDC domain VPBB_2840 PF00892 EamA-like transporter family VPBB_2842 PF01810 LysE type translocator VPBB_2844 PF00580 UvrD/REP helicase N-terminal domain VPBB_2844 PF13361 UvrD-like helicase C-terminal domain VPBB_2846 PF05114 Protein of unknown function (DUF692) VPBB_2850 PF07690 Major Facilitator Superfamily VPBB_2851 PF03466 LysR substrate binding domain VPBB_2851 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_2852 PF01321 Creatinase/Prolidase N-terminal domain VPBB_2852 PF00557 Metallopeptidase family M24 VPBB_2852 PF00557 Metallopeptidase family M24 VPBB_2852 PF01321 Creatinase/Prolidase N-terminal domain VPBB_2853 PF04055 Radical SAM superfamily VPBB_2853 PF06968 Biotin and Thiamin Synthesis associated domain VPBB_2854 PF05690 Thiazole biosynthesis protein ThiG VPBB_2855 PF02597 ThiS family VPBB_2856 PF00899 ThiF family VPBB_2857 PF02581 Thiamine monophosphate synthase VPBB_2858 PF13667 ThiC-associated domain VPBB_2858 PF01964 Radical SAM ThiC family VPBB_2859 PF02537 CrcB-like protein, Camphor Resistance (CrcB) VPBB_2863 PF00132 Bacterial transferase hexapeptide (six repeats) VPBB_2864 PF07369 Protein of unknown function (DUF1488) VPBB_2865 PF01488 Shikimate / quinate 5-dehydrogenase VPBB_2865 PF18317 Shikimate 5'-dehydrogenase C-terminal domain VPBB_2865 PF08501 Shikimate dehydrogenase substrate binding domain VPBB_2866 PF01218 Coproporphyrinogen III oxidase VPBB_2867 PF01300 Telomere recombination VPBB_2869 PF02222 ATP-grasp domain VPBB_2869 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain VPBB_2871 PF01396 Topoisomerase DNA binding C4 zinc finger VPBB_2872 PF04361 Protein of unknown function (DUF494) VPBB_2873 PF17782 DprA winged helix domain VPBB_2873 PF02481 DNA recombination-mediator protein A VPBB_2875 PF01327 Polypeptide deformylase VPBB_2876 PF02911 Formyl transferase, C-terminal domain VPBB_2876 PF00551 Formyl transferase VPBB_2877 PF01189 16S rRNA methyltransferase RsmB/F VPBB_2877 PF01029 NusB family VPBB_2878 PF02254 TrkA-N domain VPBB_2878 PF02080 TrkA-C domain VPBB_2879 PF02386 Cation transport protein VPBB_2881 PF03006 Haemolysin-III related VPBB_2882 PF07070 SpoOM protein VPBB_2885 PF06288 Protein of unknown function (DUF1040) VPBB_2886 PF13746 4Fe-4S dicluster domain VPBB_2886 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase VPBB_2886 PF12801 4Fe-4S binding domain VPBB_2887 PF01636 Phosphotransferase enzyme family VPBB_2888 PF01323 DSBA-like thioredoxin domain VPBB_2889 PF01553 Acyltransferase VPBB_2891 PF01078 Magnesium chelatase, subunit ChlI VPBB_2891 PF13335 Magnesium chelatase, subunit ChlI C-terminal VPBB_2902 PF00589 Phage integrase family VPBB_2902 PF02899 Phage integrase, N-terminal SAM-like domain VPBB_2906 PF01078 Magnesium chelatase, subunit ChlI VPBB_2906 PF13335 Magnesium chelatase, subunit ChlI C-terminal VPBB_2907 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VPBB_2907 PF00205 Thiamine pyrophosphate enzyme, central domain VPBB_2907 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VPBB_2909 PF01063 Amino-transferase class IV VPBB_2910 PF00920 Dehydratase family VPBB_2911 PF00291 Pyridoxal-phosphate dependent enzyme VPBB_2911 PF00585 C-terminal regulatory domain of Threonine dehydratase VPBB_2912 PF03466 LysR substrate binding domain VPBB_2912 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_2913 PF07690 Major Facilitator Superfamily VPBB_2914 PF00497 Bacterial extracellular solute-binding proteins, family 3 VPBB_2915 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_2916 PF12804 MobA-like NTP transferase domain VPBB_2916 PF00132 Bacterial transferase hexapeptide (six repeats) VPBB_2917 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VPBB_2917 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VPBB_2918 PF02874 ATP synthase alpha/beta family, beta-barrel domain VPBB_2918 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VPBB_2919 PF00231 ATP synthase VPBB_2920 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VPBB_2920 PF00306 ATP synthase alpha/beta chain, C terminal domain VPBB_2920 PF02874 ATP synthase alpha/beta family, beta-barrel domain VPBB_2921 PF00213 ATP synthase delta (OSCP) subunit VPBB_2922 PF00430 ATP synthase B/B' CF(0) VPBB_2923 PF00137 ATP synthase subunit C VPBB_2924 PF00119 ATP synthase A chain VPBB_2925 PF03899 ATP synthase I chain VPBB_2926 PF02195 ParB-like nuclease domain VPBB_2926 PF17762 HTH domain found in ParB protein VPBB_2927 PF13614 AAA domain VPBB_2928 PF02527 rRNA small subunit methyltransferase G VPBB_2929 PF01134 Glucose inhibited division protein A VPBB_2929 PF13932 GidA associated domain VPBB_A0003 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VPBB_A0003 PF00005 ABC transporter VPBB_A0005 PF08719 Domain of unknown function (DUF1768) VPBB_A0005 PF00925 GTP cyclohydrolase II VPBB_A0007 PF17149 Periplasmic sensor domain found in signal transduction proteins VPBB_A0007 PF00072 Response regulator receiver domain VPBB_A0007 PF00672 HAMP domain VPBB_A0007 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_A0007 PF01627 Hpt domain VPBB_A0007 PF00512 His Kinase A (phospho-acceptor) domain VPBB_A0009 PF01709 Transcriptional regulator VPBB_A0011 PF01098 Cell cycle protein VPBB_A0013 PF00005 ABC transporter VPBB_A0017 PF13492 GAF domain VPBB_A0017 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_A0017 PF06580 Histidine kinase VPBB_A0017 PF07694 5TMR of 5TMR-LYT VPBB_A0018 PF04397 LytTr DNA-binding domain VPBB_A0018 PF00072 Response regulator receiver domain VPBB_A0020 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VPBB_A0021 PF17200 Single Cache domain 2 VPBB_A0021 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_A0021 PF00672 HAMP domain VPBB_A0024 PF00132 Bacterial transferase hexapeptide (six repeats) VPBB_A0025 PF03616 Sodium/glutamate symporter VPBB_A0027 PF00005 ABC transporter VPBB_A0028 PF00155 Aminotransferase class I and II VPBB_A0028 PF00392 Bacterial regulatory proteins, gntR family VPBB_A0029 PF03616 Sodium/glutamate symporter VPBB_A0031 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VPBB_A0034 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A0034 PF03466 LysR substrate binding domain VPBB_A0035 PF02678 Pirin VPBB_A0035 PF17954 Quercetinase C-terminal cupin domain VPBB_A0036 PF07681 DoxX VPBB_A0038 PF00730 HhH-GPD superfamily base excision DNA repair protein VPBB_A0038 PF06029 AlkA N-terminal domain VPBB_A0039 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain VPBB_A0039 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VPBB_A0043 PF03600 Citrate transporter VPBB_A0048 PF00704 Glycosyl hydrolases family 18 VPBB_A0048 PF08329 Chitinase A, N-terminal domain VPBB_A0050 PF06865 Pyrimidine/purine nucleoside phosphorylase VPBB_A0052 PF00563 EAL domain VPBB_A0052 PF00990 Diguanylate cyclase, GGDEF domain VPBB_A0054 PF01554 MatE VPBB_A0055 PF00849 RNA pseudouridylate synthase VPBB_A0058 PF03466 LysR substrate binding domain VPBB_A0058 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A0061 PF17152 Periplasmic sensor domain VPBB_A0061 PF00990 Diguanylate cyclase, GGDEF domain VPBB_A0063 PF00756 Putative esterase VPBB_A0064 PF08240 Alcohol dehydrogenase GroES-like domain VPBB_A0064 PF00107 Zinc-binding dehydrogenase VPBB_A0065 PF00797 N-acetyltransferase VPBB_A0066 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A0066 PF03466 LysR substrate binding domain VPBB_A0069 PF01614 Bacterial transcriptional regulator VPBB_A0069 PF09339 IclR helix-turn-helix domain VPBB_A0071 PF10688 Bacterial inner membrane protein VPBB_A0072 PF07883 Cupin domain VPBB_A0075 PF00294 pfkB family carbohydrate kinase VPBB_A0076 PF01081 KDPG and KHG aldolase VPBB_A0079 PF13229 Right handed beta helix region VPBB_A0080 PF00474 Sodium:solute symporter family VPBB_A0081 PF14583 Oligogalacturonate lyase VPBB_A0082 PF04954 Siderophore-interacting protein VPBB_A0082 PF08021 Siderophore-interacting FAD-binding domain VPBB_A0083 PF01810 LysE type translocator VPBB_A0084 PF01037 Lrp/AsnC ligand binding domain VPBB_A0085 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading VPBB_A0085 PF18416 N-acetylglucosamine binding protein domain 2 VPBB_A0087 PF13599 Pentapeptide repeats (9 copies) VPBB_A0088 PF03922 OmpW family VPBB_A0089 PF07690 Major Facilitator Superfamily VPBB_A0091 PF12706 Beta-lactamase superfamily domain VPBB_A0093 PF01204 Trehalase VPBB_A0094 PF01661 Macro domain VPBB_A0095 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VPBB_A0096 PF03466 LysR substrate binding domain VPBB_A0096 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A0098 PF03466 LysR substrate binding domain VPBB_A0098 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A0101 PF13419 Haloacid dehalogenase-like hydrolase VPBB_A0106 PF05651 Putative sugar diacid recognition VPBB_A0106 PF17853 GGDEF-like domain VPBB_A0106 PF13556 PucR C-terminal helix-turn-helix domain VPBB_A0107 PF02447 GntP family permease VPBB_A0108 PF02595 Glycerate kinase family VPBB_A0109 PF00155 Aminotransferase class I and II VPBB_A0109 PF00392 Bacterial regulatory proteins, gntR family VPBB_A0113 PF00583 Acetyltransferase (GNAT) family VPBB_A0118 PF03264 NapC/NirT cytochrome c family, N-terminal region VPBB_A0119 PF00384 Molybdopterin oxidoreductase VPBB_A0119 PF01568 Molydopterin dinucleotide binding domain VPBB_A0119 PF18364 Molybdopterin oxidoreductase N-terminal domain VPBB_A0121 PF02581 Thiamine monophosphate synthase VPBB_A0122 PF02110 Hydroxyethylthiazole kinase family VPBB_A0123 PF03070 TENA/THI-4/PQQC family VPBB_A0124 PF09084 NMT1/THI5 like VPBB_A0125 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_A0126 PF00005 ABC transporter VPBB_A0127 PF08543 Phosphomethylpyrimidine kinase VPBB_A0128 PF01523 Putative modulator of DNA gyrase VPBB_A0129 PF01523 Putative modulator of DNA gyrase VPBB_A0130 PF04013 Putative SAM-dependent RNA methyltransferase VPBB_A0132 PF10928 Protein of unknown function (DUF2810) VPBB_A0133 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VPBB_A0133 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VPBB_A0135 PF03009 Glycerophosphoryl diester phosphodiesterase family VPBB_A0137 PF00486 Transcriptional regulatory protein, C terminal VPBB_A0137 PF00072 Response regulator receiver domain VPBB_A0138 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_A0138 PF00672 HAMP domain VPBB_A0138 PF00512 His Kinase A (phospho-acceptor) domain VPBB_A0138 PF16750 Sensor domain of 2-component histidine kinase VPBB_A0139 PF00593 TonB dependent receptor VPBB_A0139 PF07715 TonB-dependent Receptor Plug Domain VPBB_A0141 PF01618 MotA/TolQ/ExbB proton channel family VPBB_A0142 PF01618 MotA/TolQ/ExbB proton channel family VPBB_A0143 PF02472 Biopolymer transport protein ExbD/TolR VPBB_A0151 PF01297 Zinc-uptake complex component A periplasmic VPBB_A0153 PF00950 ABC 3 transport family VPBB_A0156 PF00326 Prolyl oligopeptidase family VPBB_A0156 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VPBB_A0157 PF07690 Major Facilitator Superfamily VPBB_A0158 PF00491 Arginase family VPBB_A0159 PF17944 Arginine decarboxylase C-terminal helical extension VPBB_A0159 PF17810 Arginine decarboxylase helical bundle domain VPBB_A0159 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VPBB_A0160 PF00753 Metallo-beta-lactamase superfamily VPBB_A0161 PF18030 RimK PreATP-grasp domain VPBB_A0161 PF08443 RimK-like ATP-grasp domain VPBB_A0162 PF18030 RimK PreATP-grasp domain VPBB_A0162 PF08443 RimK-like ATP-grasp domain VPBB_A0164 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A0164 PF03466 LysR substrate binding domain VPBB_A0169 PF00232 Glycosyl hydrolase family 1 VPBB_A0170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_A0170 PF02743 Cache domain VPBB_A0170 PF00512 His Kinase A (phospho-acceptor) domain VPBB_A0171 PF02954 Bacterial regulatory protein, Fis family VPBB_A0171 PF00072 Response regulator receiver domain VPBB_A0171 PF00158 Sigma-54 interaction domain VPBB_A0172 PF05230 MASE2 domain VPBB_A0172 PF00990 Diguanylate cyclase, GGDEF domain VPBB_A0173 PF05525 Branched-chain amino acid transport protein VPBB_A0176 PF01266 FAD dependent oxidoreductase VPBB_A0178 PF01212 Beta-eliminating lyase VPBB_A0180 PF01773 Na+ dependent nucleoside transporter N-terminus VPBB_A0180 PF07670 Nucleoside recognition VPBB_A0180 PF07662 Na+ dependent nucleoside transporter C-terminus VPBB_A0182 PF13532 2OG-Fe(II) oxygenase superfamily VPBB_A0183 PF00990 Diguanylate cyclase, GGDEF domain VPBB_A0183 PF05230 MASE2 domain VPBB_A0184 PF00672 HAMP domain VPBB_A0184 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_A0184 PF12729 Four helix bundle sensory module for signal transduction VPBB_A0186 PF00990 Diguanylate cyclase, GGDEF domain VPBB_A0187 PF04244 Deoxyribodipyrimidine photo-lyase-related protein VPBB_A0189 PF01641 SelR domain VPBB_A0189 PF01625 Peptide methionine sulfoxide reductase VPBB_A0190 PF02566 OsmC-like protein VPBB_A0191 PF12464 Maltose acetyltransferase VPBB_A0191 PF14602 Hexapeptide repeat of succinyl-transferase VPBB_A0198 PF03466 LysR substrate binding domain VPBB_A0198 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A0199 PF13419 Haloacid dehalogenase-like hydrolase VPBB_A0202 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VPBB_A0203 PF00194 Eukaryotic-type carbonic anhydrase VPBB_A0204 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VPBB_A0205 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VPBB_A0206 PF00005 ABC transporter VPBB_A0206 PF12704 MacB-like periplasmic core domain VPBB_A0206 PF02687 FtsX-like permease family VPBB_A0207 PF02321 Outer membrane efflux protein VPBB_A0208 PF00657 GDSL-like Lipase/Acylhydrolase VPBB_A0211 PF03611 PTS system sugar-specific permease component VPBB_A0213 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VPBB_A0214 PF00356 Bacterial regulatory proteins, lacI family VPBB_A0215 PF13419 Haloacid dehalogenase-like hydrolase VPBB_A0217 PF00266 Aminotransferase class-V VPBB_A0219 PF00005 ABC transporter VPBB_A0220 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_A0221 PF07702 UTRA domain VPBB_A0221 PF00392 Bacterial regulatory proteins, gntR family VPBB_A0224 PF04393 Protein of unknown function (DUF535) VPBB_A0225 PF01266 FAD dependent oxidoreductase VPBB_A0226 PF00246 Zinc carboxypeptidase VPBB_A0226 PF18027 Cytosolic carboxypeptidase N-terminal domain VPBB_A0227 PF01389 OmpA-like transmembrane domain VPBB_A0227 PF00691 OmpA family VPBB_A0228 PF03466 LysR substrate binding domain VPBB_A0228 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A0230 PF03466 LysR substrate binding domain VPBB_A0230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A0232 PF00854 POT family VPBB_A0234 PF03313 Serine dehydratase alpha chain VPBB_A0234 PF03315 Serine dehydratase beta chain VPBB_A0238 PF08264 Anticodon-binding domain of tRNA VPBB_A0238 PF00133 tRNA synthetases class I (I, L, M and V) VPBB_A0239 PF01464 Transglycosylase SLT domain VPBB_A0243 PF00460 Flagella basal body rod protein VPBB_A0244 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VPBB_A0244 PF00460 Flagella basal body rod protein VPBB_A0245 PF03963 Flagellar hook capping protein - N-terminal region VPBB_A0245 PF13860 FlgD Ig-like domain VPBB_A0245 PF13861 FlgD Tudor-like domain VPBB_A0246 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VPBB_A0246 PF00460 Flagella basal body rod protein VPBB_A0246 PF07559 Flagellar basal body protein FlaE VPBB_A0247 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VPBB_A0247 PF00460 Flagella basal body rod protein VPBB_A0248 PF00460 Flagella basal body rod protein VPBB_A0248 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VPBB_A0249 PF02107 Flagellar L-ring protein VPBB_A0250 PF02119 Flagellar P-ring protein VPBB_A0251 PF10135 Rod binding protein VPBB_A0251 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VPBB_A0252 PF00460 Flagella basal body rod protein VPBB_A0252 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VPBB_A0253 PF00669 Bacterial flagellin N-terminal helical region VPBB_A0258 PF01070 FMN-dependent dehydrogenase VPBB_A0264 PF00581 Rhodanese-like domain VPBB_A0265 PF00166 Chaperonin 10 Kd subunit VPBB_A0266 PF00118 TCP-1/cpn60 chaperonin family VPBB_A0268 PF01810 LysE type translocator VPBB_A0269 PF03466 LysR substrate binding domain VPBB_A0269 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A0275 PF02872 5'-nucleotidase, C-terminal domain VPBB_A0275 PF00149 Calcineurin-like phosphoesterase VPBB_A0276 PF03060 Nitronate monooxygenase VPBB_A0279 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A0279 PF03466 LysR substrate binding domain VPBB_A0281 PF01625 Peptide methionine sulfoxide reductase VPBB_A0281 PF01641 SelR domain VPBB_A0282 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VPBB_A0283 PF08220 DeoR-like helix-turn-helix domain VPBB_A0283 PF00455 DeoR C terminal sensor domain VPBB_A0285 PF06628 Catalase-related immune-responsive VPBB_A0285 PF00199 Catalase VPBB_A0287 PF00857 Isochorismatase family VPBB_A0290 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain VPBB_A0290 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family VPBB_A0295 PF03466 LysR substrate binding domain VPBB_A0295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A0296 PF01389 OmpA-like transmembrane domain VPBB_A0296 PF00691 OmpA family VPBB_A0298 PF06629 MltA-interacting protein MipA VPBB_A0299 PF04170 NlpE N-terminal domain VPBB_A0299 PF17185 NlpE C-terminal OB domain VPBB_A0300 PF02001 Protein of unknown function DUF134 VPBB_A0305 PF03144 Elongation factor Tu domain 2 VPBB_A0305 PF03764 Elongation factor G, domain IV VPBB_A0305 PF00009 Elongation factor Tu GTP binding domain VPBB_A0305 PF14492 Elongation Factor G, domain II VPBB_A0305 PF00679 Elongation factor G C-terminus VPBB_A0306 PF13378 Enolase C-terminal domain-like VPBB_A0306 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain VPBB_A0308 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A0308 PF03466 LysR substrate binding domain VPBB_A0311 PF00376 MerR family regulatory protein VPBB_A0311 PF09278 MerR, DNA binding VPBB_A0316 PF13091 PLD-like domain VPBB_A0317 PF13533 Biotin-lipoyl like VPBB_A0318 PF00873 AcrB/AcrD/AcrF family VPBB_A0322 PF08402 TOBE domain VPBB_A0322 PF00005 ABC transporter VPBB_A0327 PF00392 Bacterial regulatory proteins, gntR family VPBB_A0327 PF07702 UTRA domain VPBB_A0328 PF02028 BCCT, betaine/carnitine/choline family transporter VPBB_A0329 PF02837 Glycosyl hydrolases family 2, sugar binding domain VPBB_A0329 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VPBB_A0329 PF00703 Glycosyl hydrolases family 2 VPBB_A0329 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 VPBB_A0330 PF00196 Bacterial regulatory proteins, luxR family VPBB_A0332 PF00990 Diguanylate cyclase, GGDEF domain VPBB_A0332 PF07694 5TMR of 5TMR-LYT VPBB_A0335 PF00873 AcrB/AcrD/AcrF family VPBB_A0336 PF13533 Biotin-lipoyl like VPBB_A0337 PF03466 LysR substrate binding domain VPBB_A0337 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A0339 PF13416 Bacterial extracellular solute-binding protein VPBB_A0340 PF00579 tRNA synthetases class I (W and Y) VPBB_A0343 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain VPBB_A0343 PF00391 PEP-utilising enzyme, mobile domain VPBB_A0343 PF02896 PEP-utilising enzyme, TIM barrel domain VPBB_A0344 PF03618 Kinase/pyrophosphorylase VPBB_A0345 PF17763 Glutaminase/Asparaginase C-terminal domain VPBB_A0345 PF00710 Asparaginase, N-terminal VPBB_A0347 PF03466 LysR substrate binding domain VPBB_A0347 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A0350 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) VPBB_A0352 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term VPBB_A0352 PF12833 Helix-turn-helix domain VPBB_A0355 PF00107 Zinc-binding dehydrogenase VPBB_A0355 PF08240 Alcohol dehydrogenase GroES-like domain VPBB_A0356 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VPBB_A0358 PF03466 LysR substrate binding domain VPBB_A0358 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A0359 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A0359 PF03466 LysR substrate binding domain VPBB_A0361 PF00271 Helicase conserved C-terminal domain VPBB_A0361 PF00270 DEAD/DEAH box helicase VPBB_A0364 PF00535 Glycosyl transferase family 2 VPBB_A0370 PF00155 Aminotransferase class I and II VPBB_A0371 PF01497 Periplasmic binding protein VPBB_A0371 PF12833 Helix-turn-helix domain VPBB_A0377 PF05661 Protein of unknown function (DUF808) VPBB_A0378 PF01979 Amidohydrolase family VPBB_A0379 PF01679 Proteolipid membrane potential modulator VPBB_A0380 PF00111 2Fe-2S iron-sulfur cluster binding domain VPBB_A0380 PF03476 MOSC N-terminal beta barrel domain VPBB_A0380 PF00111 2Fe-2S iron-sulfur cluster binding domain VPBB_A0380 PF03473 MOSC domain VPBB_A0380 PF03473 MOSC domain VPBB_A0380 PF03476 MOSC N-terminal beta barrel domain VPBB_A0381 PF02540 NAD synthase VPBB_A0382 PF01467 Cytidylyltransferase-like VPBB_A0390 PF00005 ABC transporter VPBB_A0391 PF01032 FecCD transport family VPBB_A0393 PF02472 Biopolymer transport protein ExbD/TolR VPBB_A0394 PF01618 MotA/TolQ/ExbB proton channel family VPBB_A0395 PF03544 Gram-negative bacterial TonB protein C-terminal VPBB_A0396 PF04055 Radical SAM superfamily VPBB_A0397 PF06228 Haem utilisation ChuX/HutX VPBB_A0398 PF01243 Pyridoxamine 5'-phosphate oxidase VPBB_A0400 PF00072 Response regulator receiver domain VPBB_A0400 PF01584 CheW-like domain VPBB_A0402 PF13087 AAA domain VPBB_A0402 PF13091 PLD-like domain VPBB_A0403 PF00082 Subtilase family VPBB_A0408 PF00141 Peroxidase VPBB_A0409 PF00210 Ferritin-like domain VPBB_A0411 PF03466 LysR substrate binding domain VPBB_A0411 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A0415 PF04151 Bacterial pre-peptidase C-terminal domain VPBB_A0415 PF08453 Peptidase family M9 N-terminal VPBB_A0415 PF01752 Collagenase VPBB_A0417 PF00128 Alpha amylase, catalytic domain VPBB_A0420 PF00999 Sodium/hydrogen exchanger family VPBB_A0420 PF02254 TrkA-N domain VPBB_A0421 PF02525 Flavodoxin-like fold VPBB_A0422 PF00582 Universal stress protein family VPBB_A0423 PF00005 ABC transporter VPBB_A0423 PF16326 ABC transporter C-terminal domain VPBB_A0423 PF12848 ABC transporter VPBB_A0424 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VPBB_A0424 PF00326 Prolyl oligopeptidase family VPBB_A0426 PF13533 Biotin-lipoyl like VPBB_A0427 PF00873 AcrB/AcrD/AcrF family VPBB_A0428 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VPBB_A0430 PF13302 Acetyltransferase (GNAT) domain VPBB_A0432 PF13185 GAF domain VPBB_A0432 PF00990 Diguanylate cyclase, GGDEF domain VPBB_A0436 PF00873 AcrB/AcrD/AcrF family VPBB_A0440 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region VPBB_A0440 PF00384 Molybdopterin oxidoreductase VPBB_A0440 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VPBB_A0440 PF12838 4Fe-4S dicluster domain VPBB_A0440 PF01568 Molydopterin dinucleotide binding domain VPBB_A0444 PF00005 ABC transporter VPBB_A0446 PF00672 HAMP domain VPBB_A0446 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_A0447 PF10282 Lactonase, 7-bladed beta-propeller VPBB_A0448 PF02567 Phenazine biosynthesis-like protein VPBB_A0449 PF01161 Phosphatidylethanolamine-binding protein VPBB_A0451 PF01758 Sodium Bile acid symporter family VPBB_A0454 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VPBB_A0455 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VPBB_A0455 PF02378 Phosphotransferase system, EIIC VPBB_A0456 PF00107 Zinc-binding dehydrogenase VPBB_A0456 PF08240 Alcohol dehydrogenase GroES-like domain VPBB_A0462 PF03222 Tryptophan/tyrosine permease family VPBB_A0464 PF00672 HAMP domain VPBB_A0464 PF02743 Cache domain VPBB_A0464 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_A0469 PF01551 Peptidase family M23 VPBB_A0469 PF08525 Opacity-associated protein A N-terminal motif VPBB_A0469 PF01476 LysM domain VPBB_A0470 PF08448 PAS fold VPBB_A0470 PF08447 PAS fold VPBB_A0470 PF00990 Diguanylate cyclase, GGDEF domain VPBB_A0470 PF00563 EAL domain VPBB_A0471 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A0471 PF03466 LysR substrate binding domain VPBB_A0472 PF07690 Major Facilitator Superfamily VPBB_A0475 PF00462 Glutaredoxin VPBB_A0476 PF00892 EamA-like transporter family VPBB_A0477 PF00267 Gram-negative porin VPBB_A0481 PF12833 Helix-turn-helix domain VPBB_A0482 PF01810 LysE type translocator VPBB_A0484 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VPBB_A0484 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VPBB_A0484 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VPBB_A0484 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VPBB_A0485 PF00116 Cytochrome C oxidase subunit II, periplasmic domain VPBB_A0485 PF02790 Cytochrome C oxidase subunit II, transmembrane domain VPBB_A0486 PF00115 Cytochrome C and Quinol oxidase polypeptide I VPBB_A0487 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 VPBB_A0488 PF00510 Cytochrome c oxidase subunit III VPBB_A0492 PF02628 Cytochrome oxidase assembly protein VPBB_A0493 PF01040 UbiA prenyltransferase family VPBB_A0494 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VPBB_A0494 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VPBB_A0499 PF00313 'Cold-shock' DNA-binding domain VPBB_A0500 PF03889 Alternative ribosome-rescue factor A VPBB_A0501 PF13426 PAS domain VPBB_A0501 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_A0501 PF08447 PAS fold VPBB_A0502 PF00990 Diguanylate cyclase, GGDEF domain VPBB_A0505 PF00005 ABC transporter VPBB_A0505 PF02687 FtsX-like permease family VPBB_A0505 PF12704 MacB-like periplasmic core domain VPBB_A0506 PF00005 ABC transporter VPBB_A0506 PF02687 FtsX-like permease family VPBB_A0506 PF12704 MacB-like periplasmic core domain VPBB_A0509 PF00672 HAMP domain VPBB_A0509 PF17200 Single Cache domain 2 VPBB_A0509 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_A0510 PF00210 Ferritin-like domain VPBB_A0512 PF07995 Glucose / Sorbosone dehydrogenase VPBB_A0513 PF00465 Iron-containing alcohol dehydrogenase VPBB_A0516 PF00892 EamA-like transporter family VPBB_A0523 PF03466 LysR substrate binding domain VPBB_A0523 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A0525 PF00501 AMP-binding enzyme VPBB_A0525 PF13193 AMP-binding enzyme C-terminal domain VPBB_A0526 PF00351 Biopterin-dependent aromatic amino acid hydroxylase VPBB_A0527 PF01329 Pterin 4 alpha carbinolamine dehydratase VPBB_A0531 PF12843 Putative quorum-sensing-regulated virulence factor VPBB_A0532 PF00270 DEAD/DEAH box helicase VPBB_A0532 PF00271 Helicase conserved C-terminal domain VPBB_A0533 PF09905 DNA-binding protein VF530 VPBB_A0534 PF00291 Pyridoxal-phosphate dependent enzyme VPBB_A0536 PF01470 Pyroglutamyl peptidase VPBB_A0538 PF02492 CobW/HypB/UreG, nucleotide-binding domain VPBB_A0538 PF07683 Cobalamin synthesis protein cobW C-terminal domain VPBB_A0539 PF00270 DEAD/DEAH box helicase VPBB_A0539 PF00271 Helicase conserved C-terminal domain VPBB_A0542 PF12792 CSS motif domain associated with EAL VPBB_A0542 PF00563 EAL domain VPBB_A0543 PF00005 ABC transporter VPBB_A0544 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_A0544 PF00672 HAMP domain VPBB_A0544 PF12729 Four helix bundle sensory module for signal transduction VPBB_A0547 PF03466 LysR substrate binding domain VPBB_A0547 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A0548 PF00884 Sulfatase VPBB_A0549 PF04055 Radical SAM superfamily VPBB_A0549 PF13186 Iron-sulfur cluster-binding domain VPBB_A0550 PF03466 LysR substrate binding domain VPBB_A0550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A0552 PF12849 PBP superfamily domain VPBB_A0554 PF12833 Helix-turn-helix domain VPBB_A0555 PF00575 S1 RNA binding domain VPBB_A0555 PF00773 RNB domain VPBB_A0555 PF08206 Ribonuclease B OB domain VPBB_A0556 PF00270 DEAD/DEAH box helicase VPBB_A0556 PF03880 DbpA RNA binding domain VPBB_A0556 PF00271 Helicase conserved C-terminal domain VPBB_A0557 PF00563 EAL domain VPBB_A0557 PF00990 Diguanylate cyclase, GGDEF domain VPBB_A0557 PF13426 PAS domain VPBB_A0558 PF00871 Acetokinase family VPBB_A0559 PF08447 PAS fold VPBB_A0559 PF13426 PAS domain VPBB_A0559 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_A0561 PF10063 Uncharacterized integral membrane protein (DUF2301) VPBB_A0562 PF00378 Enoyl-CoA hydratase/isomerase VPBB_A0563 PF01039 Carboxyl transferase domain VPBB_A0564 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VPBB_A0564 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VPBB_A0564 PF02770 Acyl-CoA dehydrogenase, middle domain VPBB_A0565 PF00376 MerR family regulatory protein VPBB_A0565 PF09278 MerR, DNA binding VPBB_A0566 PF02803 Thiolase, C-terminal domain VPBB_A0566 PF00108 Thiolase, N-terminal domain VPBB_A0567 PF00171 Aldehyde dehydrogenase family VPBB_A0569 PF00378 Enoyl-CoA hydratase/isomerase VPBB_A0570 PF00378 Enoyl-CoA hydratase/isomerase VPBB_A0571 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VPBB_A0571 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VPBB_A0573 PF06481 COX Aromatic Rich Motif VPBB_A0573 PF00116 Cytochrome C oxidase subunit II, periplasmic domain VPBB_A0574 PF00115 Cytochrome C and Quinol oxidase polypeptide I VPBB_A0575 PF00510 Cytochrome c oxidase subunit III VPBB_A0577 PF01040 UbiA prenyltransferase family VPBB_A0578 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VPBB_A0579 PF01565 FAD binding domain VPBB_A0579 PF08031 Berberine and berberine like VPBB_A0580 PF03466 LysR substrate binding domain VPBB_A0580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A0583 PF03466 LysR substrate binding domain VPBB_A0583 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A0585 PF00005 ABC transporter VPBB_A0586 PF00497 Bacterial extracellular solute-binding proteins, family 3 VPBB_A0587 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_A0588 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_A0590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A0590 PF03466 LysR substrate binding domain VPBB_A0591 PF00043 Glutathione S-transferase, C-terminal domain VPBB_A0591 PF02798 Glutathione S-transferase, N-terminal domain VPBB_A0593 PF00364 Biotin-requiring enzyme VPBB_A0593 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VPBB_A0593 PF02817 e3 binding domain VPBB_A0594 PF02780 Transketolase, C-terminal domain VPBB_A0594 PF02779 Transketolase, pyrimidine binding domain VPBB_A0595 PF00676 Dehydrogenase E1 component VPBB_A0598 PF04314 Copper chaperone PCu(A)C VPBB_A0602 PF01497 Periplasmic binding protein VPBB_A0603 PF01032 FecCD transport family VPBB_A0604 PF01032 FecCD transport family VPBB_A0605 PF00005 ABC transporter VPBB_A0606 PF13411 MerR HTH family regulatory protein VPBB_A0609 PF00593 TonB dependent receptor VPBB_A0609 PF07715 TonB-dependent Receptor Plug Domain VPBB_A0616 PF12805 FUSC-like inner membrane protein yccS VPBB_A0618 PF12462 DNA helicase IV / RNA helicase N terminal VPBB_A0618 PF00580 UvrD/REP helicase N-terminal domain VPBB_A0618 PF13361 UvrD-like helicase C-terminal domain VPBB_A0620 PF02142 MGS-like domain VPBB_A0621 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VPBB_A0622 PF00672 HAMP domain VPBB_A0622 PF00072 Response regulator receiver domain VPBB_A0622 PF01627 Hpt domain VPBB_A0622 PF00512 His Kinase A (phospho-acceptor) domain VPBB_A0622 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_A0625 PF00072 Response regulator receiver domain VPBB_A0625 PF00486 Transcriptional regulatory protein, C terminal VPBB_A0626 PF00884 Sulfatase VPBB_A0627 PF00884 Sulfatase VPBB_A0629 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A0629 PF03466 LysR substrate binding domain VPBB_A0630 PF00884 Sulfatase VPBB_A0631 PF13186 Iron-sulfur cluster-binding domain VPBB_A0631 PF04055 Radical SAM superfamily VPBB_A0632 PF17863 AAA lid domain VPBB_A0632 PF07726 ATPase family associated with various cellular activities (AAA) VPBB_A0635 PF00092 von Willebrand factor type A domain VPBB_A0638 PF03466 LysR substrate binding domain VPBB_A0638 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A0639 PF00781 Diacylglycerol kinase catalytic domain VPBB_A0640 PF04076 Bacterial OB fold (BOF) protein VPBB_A0643 PF13186 Iron-sulfur cluster-binding domain VPBB_A0643 PF04055 Radical SAM superfamily VPBB_A0645 PF08774 VRR-NUC domain VPBB_A0645 PF18081 Fanconi anemia-associated nuclease SAP domain VPBB_A0648 PF01435 Peptidase family M48 VPBB_A0649 PF04011 LemA family VPBB_A0650 PF03606 C4-dicarboxylate anaerobic carrier VPBB_A0652 PF00814 Glycoprotease family VPBB_A0652 PF00583 Acetyltransferase (GNAT) family VPBB_A0654 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_A0654 PF00072 Response regulator receiver domain VPBB_A0655 PF00155 Aminotransferase class I and II VPBB_A0656 PF01926 50S ribosome-binding GTPase VPBB_A0657 PF04151 Bacterial pre-peptidase C-terminal domain VPBB_A0657 PF08453 Peptidase family M9 N-terminal VPBB_A0657 PF01752 Collagenase VPBB_A0659 PF12833 Helix-turn-helix domain VPBB_A0660 PF03466 LysR substrate binding domain VPBB_A0660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A0664 PF13629 Pilus formation protein N terminal region VPBB_A0664 PF00263 Bacterial type II and III secretion system protein VPBB_A0664 PF04972 BON domain VPBB_A0667 PF00437 Type II/IV secretion system protein VPBB_A0674 PF05736 OprF membrane domain VPBB_A0674 PF00691 OmpA family VPBB_A0676 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A0676 PF03466 LysR substrate binding domain VPBB_A0677 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A0677 PF03466 LysR substrate binding domain VPBB_A0679 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_A0679 PF00512 His Kinase A (phospho-acceptor) domain VPBB_A0679 PF09456 RcsC Alpha-Beta-Loop (ABL) VPBB_A0679 PF00072 Response regulator receiver domain VPBB_A0680 PF00990 Diguanylate cyclase, GGDEF domain VPBB_A0680 PF00563 EAL domain VPBB_A0680 PF03707 Bacterial signalling protein N terminal repeat VPBB_A0680 PF13188 PAS domain VPBB_A0681 PF00072 Response regulator receiver domain VPBB_A0681 PF00196 Bacterial regulatory proteins, luxR family VPBB_A0682 PF00990 Diguanylate cyclase, GGDEF domain VPBB_A0684 PF00072 Response regulator receiver domain VPBB_A0684 PF00196 Bacterial regulatory proteins, luxR family VPBB_A0687 PF01584 CheW-like domain VPBB_A0687 PF00072 Response regulator receiver domain VPBB_A0690 PF00892 EamA-like transporter family VPBB_A0693 PF01569 PAP2 superfamily VPBB_A0695 PF07504 Fungalysin/Thermolysin Propeptide Motif VPBB_A0695 PF02868 Thermolysin metallopeptidase, alpha-helical domain VPBB_A0695 PF04151 Bacterial pre-peptidase C-terminal domain VPBB_A0695 PF03413 Peptidase propeptide and YPEB domain VPBB_A0695 PF01447 Thermolysin metallopeptidase, catalytic domain VPBB_A0696 PF00893 Small Multidrug Resistance protein VPBB_A0697 PF00892 EamA-like transporter family VPBB_A0701 PF00171 Aldehyde dehydrogenase family VPBB_A0702 PF00939 Sodium:sulfate symporter transmembrane region VPBB_A0704 PF00989 PAS fold VPBB_A0704 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_A0704 PF17203 Single cache domain 3 VPBB_A0704 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VPBB_A0706 PF13187 4Fe-4S dicluster domain VPBB_A0706 PF01645 Conserved region in glutamate synthase VPBB_A0708 PF00141 Peroxidase VPBB_A0711 PF01757 Acyltransferase family VPBB_A0713 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VPBB_A0717 PF00571 CBS domain VPBB_A0717 PF03448 MgtE intracellular N domain VPBB_A0717 PF01769 Divalent cation transporter VPBB_A0726 PF01327 Polypeptide deformylase VPBB_A0727 PF09278 MerR, DNA binding VPBB_A0727 PF00376 MerR family regulatory protein VPBB_A0729 PF02253 Phospholipase A1 VPBB_A0733 PF00929 Exonuclease VPBB_A0733 PF14579 Helix-hairpin-helix motif VPBB_A0733 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VPBB_A0733 PF07733 Bacterial DNA polymerase III alpha NTPase domain VPBB_A0733 PF11490 DNA polymerase III polC-type N-terminus II VPBB_A0733 PF02811 PHP domain VPBB_A0734 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A0734 PF03466 LysR substrate binding domain VPBB_A0735 PF01039 Carboxyl transferase domain VPBB_A0735 PF17848 Acetyl-coA carboxylase zinc finger domain VPBB_A0744 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A0744 PF03466 LysR substrate binding domain VPBB_A0747 PF00271 Helicase conserved C-terminal domain VPBB_A0748 PF02347 Glycine cleavage system P-protein VPBB_A0749 PF01597 Glycine cleavage H-protein VPBB_A0750 PF00464 Serine hydroxymethyltransferase VPBB_A0752 PF01571 Aminomethyltransferase folate-binding domain VPBB_A0752 PF08669 Glycine cleavage T-protein C-terminal barrel domain VPBB_A0756 PF00873 AcrB/AcrD/AcrF family VPBB_A0758 PF02378 Phosphotransferase system, EIIC VPBB_A0758 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VPBB_A0759 PF00294 pfkB family carbohydrate kinase VPBB_A0760 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VPBB_A0760 PF00381 PTS HPr component phosphorylation site VPBB_A0761 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VPBB_A0761 PF00356 Bacterial regulatory proteins, lacI family VPBB_A0765 PF00563 EAL domain VPBB_A0765 PF01590 GAF domain VPBB_A0765 PF00990 Diguanylate cyclase, GGDEF domain VPBB_A0765 PF00989 PAS fold VPBB_A0766 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_A0767 PF00497 Bacterial extracellular solute-binding proteins, family 3 VPBB_A0768 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_A0769 PF00005 ABC transporter VPBB_A0770 PF02887 Pyruvate kinase, alpha/beta domain VPBB_A0770 PF00224 Pyruvate kinase, barrel domain VPBB_A0771 PF07690 Major Facilitator Superfamily VPBB_A0773 PF00512 His Kinase A (phospho-acceptor) domain VPBB_A0773 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_A0773 PF00672 HAMP domain VPBB_A0774 PF14532 Sigma-54 interaction domain VPBB_A0774 PF02954 Bacterial regulatory protein, Fis family VPBB_A0774 PF00072 Response regulator receiver domain VPBB_A0776 PF00465 Iron-containing alcohol dehydrogenase VPBB_A0777 PF06719 AraC-type transcriptional regulator N-terminus VPBB_A0777 PF12833 Helix-turn-helix domain VPBB_A0778 PF00704 Glycosyl hydrolases family 18 VPBB_A0778 PF06483 Chitinase C VPBB_A0779 PF00483 Nucleotidyl transferase VPBB_A0780 PF01268 Formate--tetrahydrofolate ligase VPBB_A0781 PF00294 pfkB family carbohydrate kinase VPBB_A0784 PF11849 Domain of unknown function (DUF3369) VPBB_A0785 PF13419 Haloacid dehalogenase-like hydrolase VPBB_A0786 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_A0788 PF04336 Acyl carrier protein phosphodiesterase VPBB_A0789 PF00271 Helicase conserved C-terminal domain VPBB_A0789 PF00270 DEAD/DEAH box helicase VPBB_A0790 PF00563 EAL domain VPBB_A0790 PF12792 CSS motif domain associated with EAL VPBB_A0793 PF01292 Prokaryotic cytochrome b561 VPBB_A0794 PF04264 YceI-like domain VPBB_A0795 PF01226 Formate/nitrite transporter VPBB_A0796 PF03466 LysR substrate binding domain VPBB_A0796 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A0797 PF06496 Protein of unknown function (DUF1097) VPBB_A0798 PF11398 Protein of unknown function (DUF2813) VPBB_A0799 PF02872 5'-nucleotidase, C-terminal domain VPBB_A0799 PF00149 Calcineurin-like phosphoesterase VPBB_A0800 PF03741 Integral membrane protein TerC family VPBB_A0803 PF12262 Bacterial virulence factor lipase N-terminal VPBB_A0804 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VPBB_A0806 PF03061 Thioesterase superfamily VPBB_A0808 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VPBB_A0808 PF12793 Sugar transport-related sRNA regulator N-term VPBB_A0814 PF00226 DnaJ domain VPBB_A0814 PF01556 DnaJ C terminal domain VPBB_A0814 PF00684 DnaJ central domain VPBB_A0816 PF00990 Diguanylate cyclase, GGDEF domain VPBB_A0816 PF00563 EAL domain VPBB_A0816 PF13188 PAS domain VPBB_A0816 PF03707 Bacterial signalling protein N terminal repeat VPBB_A0817 PF12241 Trans-2-enoyl-CoA reductase catalytic region VPBB_A0817 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VPBB_A0817 PF07055 Enoyl reductase FAD binding domain VPBB_A0818 PF00005 ABC transporter VPBB_A0819 PF13472 GDSL-like Lipase/Acylhydrolase family VPBB_A0822 PF02682 Carboxyltransferase domain, subdomain C and D VPBB_A0823 PF03746 LamB/YcsF family VPBB_A0824 PF13426 PAS domain VPBB_A0824 PF08448 PAS fold VPBB_A0824 PF00990 Diguanylate cyclase, GGDEF domain VPBB_A0824 PF00563 EAL domain VPBB_A0824 PF05231 MASE1 VPBB_A0824 PF08447 PAS fold VPBB_A0825 PF16363 GDP-mannose 4,6 dehydratase VPBB_A0827 PF00593 TonB dependent receptor VPBB_A0827 PF07715 TonB-dependent Receptor Plug Domain VPBB_A0828 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A0828 PF03466 LysR substrate binding domain VPBB_A0829 PF00583 Acetyltransferase (GNAT) family VPBB_A0829 PF13380 CoA binding domain VPBB_A0829 PF13607 Succinyl-CoA ligase like flavodoxin domain VPBB_A0831 PF07478 D-ala D-ala ligase C-terminus VPBB_A0831 PF01820 D-ala D-ala ligase N-terminus VPBB_A0833 PF01253 Translation initiation factor SUI1 VPBB_A0836 PF00582 Universal stress protein family VPBB_A0837 PF03701 Uncharacterised protein family (UPF0181) VPBB_A0840 PF00072 Response regulator receiver domain VPBB_A0840 PF00486 Transcriptional regulatory protein, C terminal VPBB_A0842 PF02233 NAD(P) transhydrogenase beta subunit VPBB_A0843 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VPBB_A0843 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VPBB_A0843 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch VPBB_A0847 PF00990 Diguanylate cyclase, GGDEF domain VPBB_A0847 PF17156 Gammaproteobacterial periplasmic sensor domain VPBB_A0849 PF00563 EAL domain VPBB_A0849 PF01590 GAF domain VPBB_A0849 PF00990 Diguanylate cyclase, GGDEF domain VPBB_A0849 PF00360 Phytochrome region VPBB_A0851 PF00005 ABC transporter VPBB_A0851 PF03459 TOBE domain VPBB_A0853 PF07685 CobB/CobQ-like glutamine amidotransferase domain VPBB_A0854 PF04076 Bacterial OB fold (BOF) protein VPBB_A0857 PF18030 RimK PreATP-grasp domain VPBB_A0857 PF08443 RimK-like ATP-grasp domain VPBB_A0858 PF00155 Aminotransferase class I and II VPBB_A0859 PF12833 Helix-turn-helix domain VPBB_A0860 PF01554 MatE VPBB_A0862 PF03477 ATP cone domain VPBB_A0862 PF13597 Anaerobic ribonucleoside-triphosphate reductase VPBB_A0865 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VPBB_A0866 PF00873 AcrB/AcrD/AcrF family VPBB_A0868 PF04143 Sulphur transport VPBB_A0871 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VPBB_A0871 PF07992 Pyridine nucleotide-disulphide oxidoreductase VPBB_A0872 PF00384 Molybdopterin oxidoreductase VPBB_A0873 PF03466 LysR substrate binding domain VPBB_A0873 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A0874 PF02634 FdhD/NarQ family VPBB_A0875 PF07690 Major Facilitator Superfamily VPBB_A0876 PF00072 Response regulator receiver domain VPBB_A0876 PF00196 Bacterial regulatory proteins, luxR family VPBB_A0877 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_A0877 PF07730 Histidine kinase VPBB_A0877 PF05231 MASE1 VPBB_A0878 PF07690 Major Facilitator Superfamily VPBB_A0879 PF01238 Phosphomannose isomerase type I VPBB_A0883 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VPBB_A0883 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VPBB_A0884 PF00085 Thioredoxin VPBB_A0885 PF07690 Major Facilitator Superfamily VPBB_A0887 PF01554 MatE VPBB_A0888 PF11756 Nitrous oxide-stimulated promoter VPBB_A0891 PF00593 TonB dependent receptor VPBB_A0891 PF07715 TonB-dependent Receptor Plug Domain VPBB_A0893 PF03605 Anaerobic c4-dicarboxylate membrane transporter VPBB_A0896 PF14824 Sirohaem biosynthesis protein central VPBB_A0896 PF10414 Sirohaem synthase dimerisation region VPBB_A0896 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VPBB_A0897 PF01226 Formate/nitrite transporter VPBB_A0898 PF13806 Rieske-like [2Fe-2S] domain VPBB_A0899 PF18267 Rubredoxin NAD+ reductase C-terminal domain VPBB_A0899 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VPBB_A0899 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VPBB_A0899 PF04324 BFD-like [2Fe-2S] binding domain VPBB_A0899 PF07992 Pyridine nucleotide-disulphide oxidoreductase VPBB_A0900 PF01272 Transcription elongation factor, GreA/GreB, C-term VPBB_A0900 PF14760 Rnk N-terminus VPBB_A0905 PF13462 Thioredoxin VPBB_A0905 PF06965 Na+/H+ antiporter 1 VPBB_A0909 PF00128 Alpha amylase, catalytic domain VPBB_A0909 PF09154 Domain of unknown function (DUF1939) VPBB_A0910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_A0910 PF00672 HAMP domain VPBB_A0911 PF01168 Alanine racemase, N-terminal domain VPBB_A0911 PF00842 Alanine racemase, C-terminal domain VPBB_A0915 PF09330 D-lactate dehydrogenase, membrane binding VPBB_A0915 PF01565 FAD binding domain VPBB_A0916 PF03466 LysR substrate binding domain VPBB_A0916 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A0917 PF05762 VWA domain containing CoxE-like protein VPBB_A0918 PF07728 AAA domain (dynein-related subfamily) VPBB_A0918 PF17868 AAA lid domain VPBB_A0918 PF12592 Protein of unknown function (DUF3763) VPBB_A0920 PF01212 Beta-eliminating lyase VPBB_A0922 PF03606 C4-dicarboxylate anaerobic carrier VPBB_A0924 PF07690 Major Facilitator Superfamily VPBB_A0926 PF08212 Lipocalin-like domain VPBB_A0929 PF13476 AAA domain VPBB_A0930 PF00149 Calcineurin-like phosphoesterase VPBB_A0930 PF12320 Type 5 capsule protein repressor C-terminal domain VPBB_A0932 PF16671 Actin cross-linking domain VPBB_A0932 PF04717 Type VI secretion system, phage-baseplate injector VPBB_A0934 PF17871 AAA lid domain VPBB_A0934 PF07724 AAA domain (Cdc48 subfamily) VPBB_A0934 PF00004 ATPase family associated with various cellular activities (AAA) VPBB_A0934 PF10431 C-terminal, D2-small domain, of ClpB protein VPBB_A0946 PF00691 OmpA family VPBB_A0946 PF13677 Membrane MotB of proton-channel complex MotA/MotB VPBB_A0950 PF03793 PASTA domain VPBB_A0950 PF00069 Protein kinase domain VPBB_A0955 PF00211 Adenylate and Guanylate cyclase catalytic domain VPBB_A0955 PF00072 Response regulator receiver domain VPBB_A0958 PF08361 MAATS-type transcriptional repressor, C-terminal region VPBB_A0958 PF00440 Bacterial regulatory proteins, tetR family VPBB_A0961 PF04324 BFD-like [2Fe-2S] binding domain VPBB_A0961 PF18267 Rubredoxin NAD+ reductase C-terminal domain VPBB_A0961 PF13806 Rieske-like [2Fe-2S] domain VPBB_A0961 PF07992 Pyridine nucleotide-disulphide oxidoreductase VPBB_A0961 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VPBB_A0961 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VPBB_A0962 PF00005 ABC transporter VPBB_A0963 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_A0964 PF00005 ABC transporter VPBB_A0965 PF03861 ANTAR domain VPBB_A0965 PF08376 Nitrate and nitrite sensing VPBB_A0966 PF01738 Dienelactone hydrolase family VPBB_A0967 PF00591 Glycosyl transferase family, a/b domain VPBB_A0967 PF02885 Glycosyl transferase family, helical bundle domain VPBB_A0968 PF10414 Sirohaem synthase dimerisation region VPBB_A0968 PF14824 Sirohaem biosynthesis protein central VPBB_A0968 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VPBB_A0969 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VPBB_A0969 PF00384 Molybdopterin oxidoreductase VPBB_A0969 PF01568 Molydopterin dinucleotide binding domain VPBB_A0970 PF00583 Acetyltransferase (GNAT) family VPBB_A0972 PF03222 Tryptophan/tyrosine permease family VPBB_A0973 PF00990 Diguanylate cyclase, GGDEF domain VPBB_A0973 PF00072 Response regulator receiver domain VPBB_A0975 PF01483 Proprotein convertase P-domain VPBB_A0975 PF00082 Subtilase family VPBB_A0977 PF00245 Alkaline phosphatase VPBB_A0980 PF00486 Transcriptional regulatory protein, C terminal VPBB_A0980 PF00072 Response regulator receiver domain VPBB_A0983 PF01048 Phosphorylase superfamily VPBB_A0984 PF04973 Nicotinamide mononucleotide transporter VPBB_A0986 PF00356 Bacterial regulatory proteins, lacI family VPBB_A0987 PF00294 pfkB family carbohydrate kinase VPBB_A0988 PF13407 Periplasmic binding protein domain VPBB_A0989 PF02653 Branched-chain amino acid transport system / permease component VPBB_A0990 PF00005 ABC transporter VPBB_A0991 PF05025 RbsD / FucU transport protein family VPBB_A0992 PF00990 Diguanylate cyclase, GGDEF domain VPBB_A0992 PF00563 EAL domain VPBB_A0993 PF01048 Phosphorylase superfamily VPBB_A1002 PF04116 Fatty acid hydroxylase superfamily VPBB_A1005 PF00512 His Kinase A (phospho-acceptor) domain VPBB_A1005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_A1005 PF00072 Response regulator receiver domain VPBB_A1005 PF09308 LuxQ, periplasmic VPBB_A1006 PF00034 Cytochrome c VPBB_A1006 PF03150 Di-haem cytochrome c peroxidase VPBB_A1007 PF00563 EAL domain VPBB_A1007 PF03707 Bacterial signalling protein N terminal repeat VPBB_A1007 PF13188 PAS domain VPBB_A1007 PF00990 Diguanylate cyclase, GGDEF domain VPBB_A1010 PF16200 C-terminal region of band_7 VPBB_A1010 PF01145 SPFH domain / Band 7 family VPBB_A1012 PF00881 Nitroreductase family VPBB_A1013 PF00005 ABC transporter VPBB_A1013 PF00571 CBS domain VPBB_A1014 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_A1015 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VPBB_A1016 PF00732 GMC oxidoreductase VPBB_A1016 PF05199 GMC oxidoreductase VPBB_A1017 PF00171 Aldehyde dehydrogenase family VPBB_A1018 PF00440 Bacterial regulatory proteins, tetR family VPBB_A1018 PF13977 BetI-type transcriptional repressor, C-terminal VPBB_A1019 PF00990 Diguanylate cyclase, GGDEF domain VPBB_A1019 PF17151 Periplasmic sensor domain VPBB_A1021 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VPBB_A1021 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VPBB_A1023 PF00378 Enoyl-CoA hydratase/isomerase VPBB_A1024 PF02770 Acyl-CoA dehydrogenase, middle domain VPBB_A1024 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VPBB_A1024 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VPBB_A1025 PF00171 Aldehyde dehydrogenase family VPBB_A1026 PF00108 Thiolase, N-terminal domain VPBB_A1026 PF02803 Thiolase, C-terminal domain VPBB_A1027 PF00376 MerR family regulatory protein VPBB_A1027 PF09278 MerR, DNA binding VPBB_A1028 PF02770 Acyl-CoA dehydrogenase, middle domain VPBB_A1028 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VPBB_A1028 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VPBB_A1029 PF01039 Carboxyl transferase domain VPBB_A1030 PF00378 Enoyl-CoA hydratase/isomerase VPBB_A1031 PF00364 Biotin-requiring enzyme VPBB_A1031 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VPBB_A1031 PF02785 Biotin carboxylase C-terminal domain VPBB_A1031 PF00289 Biotin carboxylase, N-terminal domain VPBB_A1032 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VPBB_A1032 PF00512 His Kinase A (phospho-acceptor) domain VPBB_A1032 PF00072 Response regulator receiver domain VPBB_A1032 PF01627 Hpt domain VPBB_A1032 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_A1032 PF00672 HAMP domain VPBB_A1035 PF12794 Mechanosensitive ion channel inner membrane domain 1 VPBB_A1035 PF12795 Mechanosensitive ion channel porin domain VPBB_A1035 PF00924 Mechanosensitive ion channel VPBB_A1037 PF00392 Bacterial regulatory proteins, gntR family VPBB_A1037 PF00155 Aminotransferase class I and II VPBB_A1038 PF01654 Cytochrome bd terminal oxidase subunit I VPBB_A1039 PF02322 Cytochrome bd terminal oxidase subunit II VPBB_A1041 PF02567 Phenazine biosynthesis-like protein VPBB_A1042 PF02627 Carboxymuconolactone decarboxylase family VPBB_A1044 PF00034 Cytochrome c VPBB_A1046 PF05724 Thiopurine S-methyltransferase (TPMT) VPBB_A1047 PF14535 AMP-binding enzyme C-terminal domain VPBB_A1047 PF00501 AMP-binding enzyme VPBB_A1048 PF00005 ABC transporter VPBB_A1053 PF12399 Branched-chain amino acid ATP-binding cassette transporter VPBB_A1053 PF00005 ABC transporter VPBB_A1056 PF01012 Electron transfer flavoprotein domain VPBB_A1057 PF01012 Electron transfer flavoprotein domain VPBB_A1057 PF00766 Electron transfer flavoprotein FAD-binding domain VPBB_A1058 PF00501 AMP-binding enzyme VPBB_A1058 PF13193 AMP-binding enzyme C-terminal domain VPBB_A1059 PF00478 IMP dehydrogenase / GMP reductase domain VPBB_A1060 PF03853 YjeF-related protein N-terminus VPBB_A1060 PF01256 Carbohydrate kinase VPBB_A1062 PF00072 Response regulator receiver domain VPBB_A1063 PF00248 Aldo/keto reductase family VPBB_A1066 PF00654 Voltage gated chloride channel VPBB_A1068 PF01566 Natural resistance-associated macrophage protein VPBB_A1069 PF01227 GTP cyclohydrolase I VPBB_A1070 PF03453 MoeA N-terminal region (domain I and II) VPBB_A1070 PF00994 Probable molybdopterin binding domain VPBB_A1070 PF03454 MoeA C-terminal region (domain IV) VPBB_A1071 PF00899 ThiF family VPBB_A1075 PF00581 Rhodanese-like domain VPBB_A1076 PF00563 EAL domain VPBB_A1076 PF00990 Diguanylate cyclase, GGDEF domain VPBB_A1076 PF03707 Bacterial signalling protein N terminal repeat VPBB_A1077 PF08329 Chitinase A, N-terminal domain VPBB_A1077 PF00704 Glycosyl hydrolases family 18 VPBB_A1081 PF00923 Transaldolase/Fructose-6-phosphate aldolase VPBB_A1082 PF02780 Transketolase, C-terminal domain VPBB_A1082 PF02779 Transketolase, pyrimidine binding domain VPBB_A1082 PF00456 Transketolase, thiamine diphosphate binding domain VPBB_A1083 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_A1083 PF08447 PAS fold VPBB_A1084 PF07690 Major Facilitator Superfamily VPBB_A1085 PF00793 DAHP synthetase I family VPBB_A1086 PF01389 OmpA-like transmembrane domain VPBB_A1086 PF00691 OmpA family VPBB_A1087 PF13419 Haloacid dehalogenase-like hydrolase VPBB_A1088 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_A1088 PF17200 Single Cache domain 2 VPBB_A1088 PF00672 HAMP domain VPBB_A1089 PF00873 AcrB/AcrD/AcrF family VPBB_A1090 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VPBB_A1091 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VPBB_A1092 PF07687 Peptidase dimerisation domain VPBB_A1092 PF01546 Peptidase family M20/M25/M40 VPBB_A1095 PF00196 Bacterial regulatory proteins, luxR family VPBB_A1095 PF00072 Response regulator receiver domain VPBB_A1096 PF07730 Histidine kinase VPBB_A1096 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_A1096 PF00672 HAMP domain VPBB_A1096 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term VPBB_A1097 PF12838 4Fe-4S dicluster domain VPBB_A1097 PF13187 4Fe-4S dicluster domain VPBB_A1099 PF01568 Molydopterin dinucleotide binding domain VPBB_A1099 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VPBB_A1099 PF00384 Molybdopterin oxidoreductase VPBB_A1100 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) VPBB_A1102 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus VPBB_A1102 PF00561 alpha/beta hydrolase fold VPBB_A1104 PF02803 Thiolase, C-terminal domain VPBB_A1104 PF00108 Thiolase, N-terminal domain VPBB_A1105 PF00106 short chain dehydrogenase VPBB_A1106 PF01810 LysE type translocator VPBB_A1108 PF07549 SecD/SecF GG Motif VPBB_A1108 PF02355 Protein export membrane protein VPBB_A1109 PF13721 SecD export protein N-terminal TM region VPBB_A1109 PF07549 SecD/SecF GG Motif VPBB_A1109 PF02355 Protein export membrane protein VPBB_A1114 PF01037 Lrp/AsnC ligand binding domain VPBB_A1118 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VPBB_A1118 PF00529 HlyD membrane-fusion protein of T1SS VPBB_A1120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_A1120 PF00512 His Kinase A (phospho-acceptor) domain VPBB_A1120 PF09308 LuxQ, periplasmic VPBB_A1120 PF00072 Response regulator receiver domain VPBB_A1121 PF13407 Periplasmic binding protein domain VPBB_A1122 PF01541 GIY-YIG catalytic domain VPBB_A1123 PF04337 Protein of unknown function, DUF480 VPBB_A1126 PF04363 Protein of unknown function (DUF496) VPBB_A1127 PF01554 MatE VPBB_A1128 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VPBB_A1129 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VPBB_A1129 PF00072 Response regulator receiver domain VPBB_A1129 PF01627 Hpt domain VPBB_A1129 PF00512 His Kinase A (phospho-acceptor) domain VPBB_A1129 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_A1129 PF00672 HAMP domain VPBB_A1130 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VPBB_A1130 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VPBB_A1133 PF03466 LysR substrate binding domain VPBB_A1133 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A1135 PF13520 Amino acid permease VPBB_A1136 PF00392 Bacterial regulatory proteins, gntR family VPBB_A1136 PF00155 Aminotransferase class I and II VPBB_A1138 PF03109 ABC1 family VPBB_A1139 PF00571 CBS domain VPBB_A1139 PF01769 Divalent cation transporter VPBB_A1139 PF03448 MgtE intracellular N domain VPBB_A1141 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin VPBB_A1142 PF07969 Amidohydrolase family VPBB_A1144 PF01966 HD domain VPBB_A1146 PF07690 Major Facilitator Superfamily VPBB_A1148 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VPBB_A1149 PF00255 Glutathione peroxidase VPBB_A1152 PF01323 DSBA-like thioredoxin domain VPBB_A1155 PF00106 short chain dehydrogenase VPBB_A1156 PF00072 Response regulator receiver domain VPBB_A1156 PF00486 Transcriptional regulatory protein, C terminal VPBB_A1157 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_A1157 PF00672 HAMP domain VPBB_A1157 PF00512 His Kinase A (phospho-acceptor) domain VPBB_A1159 PF01219 Prokaryotic diacylglycerol kinase VPBB_A1160 PF08019 Phosphoethanolamine transferase EptA/EptB VPBB_A1160 PF00884 Sulfatase VPBB_A1161 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VPBB_A1163 PF07690 Major Facilitator Superfamily VPBB_A1167 PF01047 MarR family VPBB_A1169 PF01734 Patatin-like phospholipase VPBB_A1170 PF02678 Pirin VPBB_A1170 PF05726 Pirin C-terminal cupin domain VPBB_A1171 PF00313 'Cold-shock' DNA-binding domain VPBB_A1173 PF00962 Adenosine/AMP deaminase VPBB_A1174 PF08534 Redoxin VPBB_A1174 PF00462 Glutaredoxin VPBB_A1176 PF00768 D-alanyl-D-alanine carboxypeptidase VPBB_A1176 PF07943 Penicillin-binding protein 5, C-terminal domain VPBB_A1178 PF02798 Glutathione S-transferase, N-terminal domain VPBB_A1179 PF02909 Tetracyclin repressor-like, C-terminal domain VPBB_A1179 PF00440 Bacterial regulatory proteins, tetR family VPBB_A1180 PF01872 RibD C-terminal domain VPBB_A1192 PF13737 Transposase DDE domain VPBB_A1196 PF03347 Vibrio thermostable direct hemolysin VPBB_A1198 PF13737 Transposase DDE domain VPBB_A1216 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VPBB_A1216 PF02874 ATP synthase alpha/beta family, beta-barrel domain VPBB_A1216 PF18269 T3SS EscN ATPase C-terminal domain VPBB_A1220 PF00813 FliP family VPBB_A1225 PF00486 Transcriptional regulatory protein, C terminal VPBB_A1230 PF00691 OmpA family VPBB_A1231 PF01312 FlhB HrpN YscU SpaS Family VPBB_A1232 PF00771 FHIPEP family VPBB_A1251 PF13402 Peptidase M60, enhancin and enhancin-like VPBB_A1251 PF17291 N-terminal domain of M60-like peptidases VPBB_A1251 PF13322 Domain of unknown function (DUF4092) VPBB_A1253 PF13737 Transposase DDE domain VPBB_A1254 PF03347 Vibrio thermostable direct hemolysin VPBB_A1272 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_A1273 PF14785 Maltose transport system permease protein MalF P2 domain VPBB_A1273 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_A1274 PF01547 Bacterial extracellular solute-binding protein VPBB_A1275 PF08402 TOBE domain VPBB_A1275 PF00005 ABC transporter VPBB_A1276 PF02397 Bacterial sugar transferase VPBB_A1279 PF02706 Chain length determinant protein VPBB_A1279 PF13614 AAA domain VPBB_A1279 PF13807 G-rich domain on putative tyrosine kinase VPBB_A1281 PF00534 Glycosyl transferases group 1 VPBB_A1288 PF00440 Bacterial regulatory proteins, tetR family VPBB_A1288 PF16925 Tetracyclin repressor-like, C-terminal domain VPBB_A1289 PF16884 N-terminal domain of oxidoreductase VPBB_A1289 PF00107 Zinc-binding dehydrogenase VPBB_A1290 PF13417 Glutathione S-transferase, N-terminal domain VPBB_A1291 PF06628 Catalase-related immune-responsive VPBB_A1291 PF00199 Catalase VPBB_A1292 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VPBB_A1292 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VPBB_A1295 PF12833 Helix-turn-helix domain VPBB_A1296 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VPBB_A1296 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VPBB_A1297 PF01238 Phosphomannose isomerase type I VPBB_A1299 PF13419 Haloacid dehalogenase-like hydrolase VPBB_A1300 PF00127 Copper binding proteins, plastocyanin/azurin family VPBB_A1301 PF00990 Diguanylate cyclase, GGDEF domain VPBB_A1301 PF00563 EAL domain VPBB_A1301 PF03707 Bacterial signalling protein N terminal repeat VPBB_A1303 PF02386 Cation transport protein VPBB_A1304 PF02254 TrkA-N domain VPBB_A1304 PF02080 TrkA-C domain VPBB_A1305 PF00072 Response regulator receiver domain VPBB_A1305 PF00486 Transcriptional regulatory protein, C terminal VPBB_A1306 PF16736 Single Cache-like VPBB_A1306 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_A1306 PF00989 PAS fold VPBB_A1306 PF00512 His Kinase A (phospho-acceptor) domain VPBB_A1307 PF00664 ABC transporter transmembrane region VPBB_A1307 PF00005 ABC transporter VPBB_A1308 PF00593 TonB dependent receptor VPBB_A1308 PF07715 TonB-dependent Receptor Plug Domain VPBB_A1309 PF00005 ABC transporter VPBB_A1310 PF01497 Periplasmic binding protein VPBB_A1311 PF01032 FecCD transport family VPBB_A1313 PF00691 OmpA family VPBB_A1316 PF00529 HlyD membrane-fusion protein of T1SS VPBB_A1317 PF00005 ABC transporter VPBB_A1317 PF00664 ABC transporter transmembrane region VPBB_A1319 PF00196 Bacterial regulatory proteins, luxR family VPBB_A1320 PF00196 Bacterial regulatory proteins, luxR family VPBB_A1322 PF00672 HAMP domain VPBB_A1322 PF02743 Cache domain VPBB_A1322 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_A1324 PF17863 AAA lid domain VPBB_A1324 PF07726 ATPase family associated with various cellular activities (AAA) VPBB_A1325 PF01882 Protein of unknown function DUF58 VPBB_A1327 PF13519 von Willebrand factor type A domain VPBB_A1328 PF07584 Aerotolerance regulator N-terminal VPBB_A1328 PF13519 von Willebrand factor type A domain VPBB_A1331 PF00005 ABC transporter VPBB_A1332 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_A1333 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_A1334 PF12849 PBP superfamily domain VPBB_A1335 PF00672 HAMP domain VPBB_A1335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_A1339 PF00593 TonB dependent receptor VPBB_A1339 PF07715 TonB-dependent Receptor Plug Domain VPBB_A1340 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VPBB_A1340 PF00326 Prolyl oligopeptidase family VPBB_A1341 PF00270 DEAD/DEAH box helicase VPBB_A1341 PF00271 Helicase conserved C-terminal domain VPBB_A1343 PF01476 LysM domain VPBB_A1343 PF17969 L,D-transpeptidase C-terminal domain VPBB_A1343 PF03734 L,D-transpeptidase catalytic domain VPBB_A1344 PF03441 FAD binding domain of DNA photolyase VPBB_A1344 PF00875 DNA photolyase VPBB_A1345 PF13411 MerR HTH family regulatory protein VPBB_A1346 PF08349 Protein of unknown function (DUF1722) VPBB_A1347 PF01048 Phosphorylase superfamily VPBB_A1351 PF00990 Diguanylate cyclase, GGDEF domain VPBB_A1352 PF11742 Protein of unknown function (DUF3302) VPBB_A1353 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VPBB_A1353 PF00529 HlyD membrane-fusion protein of T1SS VPBB_A1354 PF07155 ECF-type riboflavin transporter, S component VPBB_A1355 PF12558 ATP-binding cassette cobalt transporter VPBB_A1355 PF00005 ABC transporter VPBB_A1357 PF12800 4Fe-4S binding domain VPBB_A1357 PF12838 4Fe-4S dicluster domain VPBB_A1358 PF00583 Acetyltransferase (GNAT) family VPBB_A1361 PF07238 PilZ domain VPBB_A1361 PF12945 Flagellar protein YcgR VPBB_A1362 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_A1362 PF00672 HAMP domain VPBB_A1363 PF13654 AAA domain VPBB_A1363 PF05362 Lon protease (S16) C-terminal proteolytic domain VPBB_A1365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VPBB_A1365 PF00005 ABC transporter VPBB_A1366 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VPBB_A1366 PF00326 Prolyl oligopeptidase family VPBB_A1367 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A1367 PF03466 LysR substrate binding domain VPBB_A1368 PF02652 L-lactate permease VPBB_A1369 PF01070 FMN-dependent dehydrogenase VPBB_A1371 PF00924 Mechanosensitive ion channel VPBB_A1372 PF00194 Eukaryotic-type carbonic anhydrase VPBB_A1377 PF08240 Alcohol dehydrogenase GroES-like domain VPBB_A1377 PF00107 Zinc-binding dehydrogenase VPBB_A1378 PF00155 Aminotransferase class I and II VPBB_A1379 PF03707 Bacterial signalling protein N terminal repeat VPBB_A1379 PF00990 Diguanylate cyclase, GGDEF domain VPBB_A1379 PF00563 EAL domain VPBB_A1380 PF00497 Bacterial extracellular solute-binding proteins, family 3 VPBB_A1381 PF00266 Aminotransferase class-V VPBB_A1382 PF00080 Copper/zinc superoxide dismutase (SODC) VPBB_A1383 PF00512 His Kinase A (phospho-acceptor) domain VPBB_A1383 PF00072 Response regulator receiver domain VPBB_A1383 PF13426 PAS domain VPBB_A1383 PF08448 PAS fold VPBB_A1383 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_A1384 PF00486 Transcriptional regulatory protein, C terminal VPBB_A1384 PF00072 Response regulator receiver domain VPBB_A1389 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A1389 PF03466 LysR substrate binding domain VPBB_A1390 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VPBB_A1397 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A1397 PF03466 LysR substrate binding domain VPBB_A1400 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VPBB_A1400 PF18269 T3SS EscN ATPase C-terminal domain VPBB_A1402 PF14842 FliG N-terminal domain VPBB_A1402 PF14841 FliG middle domain VPBB_A1402 PF01706 FliG C-terminal domain VPBB_A1403 PF01514 Secretory protein of YscJ/FliF family VPBB_A1403 PF08345 Flagellar M-ring protein C-terminal VPBB_A1404 PF02049 Flagellar hook-basal body complex protein FliE VPBB_A1405 PF02954 Bacterial regulatory protein, Fis family VPBB_A1405 PF00158 Sigma-54 interaction domain VPBB_A1405 PF00072 Response regulator receiver domain VPBB_A1408 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VPBB_A1409 PF00813 FliP family VPBB_A1410 PF01313 Bacterial export proteins, family 3 VPBB_A1411 PF01311 Bacterial export proteins, family 1 VPBB_A1412 PF01312 FlhB HrpN YscU SpaS Family VPBB_A1413 PF00771 FHIPEP family VPBB_A1415 PF00700 Bacterial flagellin C-terminal helical region VPBB_A1415 PF00669 Bacterial flagellin N-terminal helical region VPBB_A1416 PF07195 Flagellar hook-associated protein 2 C-terminus VPBB_A1416 PF07196 Flagellin hook IN motif VPBB_A1416 PF02465 Flagellar hook-associated protein 2 N-terminus VPBB_A1417 PF02561 Flagellar protein FliS VPBB_A1420 PF03748 Flagellar basal body-associated protein FliL VPBB_A1421 PF04545 Sigma-70, region 4 VPBB_A1421 PF04542 Sigma-70 region 2 VPBB_A1422 PF01618 MotA/TolQ/ExbB proton channel family VPBB_A1423 PF00691 OmpA family VPBB_A1423 PF13677 Membrane MotB of proton-channel complex MotA/MotB VPBB_A1426 PF08000 Bacterial PH domain VPBB_A1432 PF04055 Radical SAM superfamily VPBB_A1433 PF00923 Transaldolase/Fructose-6-phosphate aldolase VPBB_A1435 PF00583 Acetyltransferase (GNAT) family VPBB_A1438 PF07690 Major Facilitator Superfamily VPBB_A1439 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A1439 PF03466 LysR substrate binding domain VPBB_A1440 PF00892 EamA-like transporter family VPBB_A1445 PF13533 Biotin-lipoyl like VPBB_A1447 PF01594 AI-2E family transporter VPBB_A1448 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VPBB_A1450 PF00175 Oxidoreductase NAD-binding domain VPBB_A1450 PF00970 Oxidoreductase FAD-binding domain VPBB_A1452 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A1452 PF03466 LysR substrate binding domain VPBB_A1454 PF00881 Nitroreductase family VPBB_A1455 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term VPBB_A1455 PF12833 Helix-turn-helix domain VPBB_A1456 PF00686 Starch binding domain VPBB_A1456 PF00128 Alpha amylase, catalytic domain VPBB_A1457 PF00768 D-alanyl-D-alanine carboxypeptidase VPBB_A1457 PF07943 Penicillin-binding protein 5, C-terminal domain VPBB_A1458 PF00561 alpha/beta hydrolase fold VPBB_A1461 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading VPBB_A1461 PF18416 N-acetylglucosamine binding protein domain 2 VPBB_A1462 PF01734 Patatin-like phospholipase VPBB_A1463 PF01914 MarC family integral membrane protein VPBB_A1464 PF00881 Nitroreductase family VPBB_A1465 PF18412 Outer-membrane lipoprotein Wza C-terminal domain VPBB_A1465 PF02563 Polysaccharide biosynthesis/export protein VPBB_A1465 PF10531 SLBB domain VPBB_A1466 PF01451 Low molecular weight phosphotyrosine protein phosphatase VPBB_A1467 PF13614 AAA domain VPBB_A1467 PF13807 G-rich domain on putative tyrosine kinase VPBB_A1467 PF02706 Chain length determinant protein VPBB_A1469 PF08803 Putative mono-oxygenase ydhR VPBB_A1470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A1470 PF03466 LysR substrate binding domain VPBB_A1472 PF00375 Sodium:dicarboxylate symporter family VPBB_A1474 PF06803 Protein of unknown function (DUF1232) VPBB_A1475 PF07687 Peptidase dimerisation domain VPBB_A1475 PF01546 Peptidase family M20/M25/M40 VPBB_A1476 PF07670 Nucleoside recognition VPBB_A1477 PF07670 Nucleoside recognition VPBB_A1480 PF00128 Alpha amylase, catalytic domain VPBB_A1481 PF00912 Transglycosylase VPBB_A1482 PF02806 Alpha amylase, C-terminal all-beta domain VPBB_A1482 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VPBB_A1482 PF00128 Alpha amylase, catalytic domain VPBB_A1483 PF02446 4-alpha-glucanotransferase VPBB_A1484 PF00343 Carbohydrate phosphorylase VPBB_A1486 PF17874 MalT-like TPR region VPBB_A1486 PF00196 Bacterial regulatory proteins, luxR family VPBB_A1490 PF02630 SCO1/SenC VPBB_A1492 PF00367 phosphotransferase system, EIIB VPBB_A1492 PF02378 Phosphotransferase system, EIIC VPBB_A1493 PF03193 RsgA GTPase VPBB_A1494 PF00375 Sodium:dicarboxylate symporter family VPBB_A1496 PF08543 Phosphomethylpyrimidine kinase VPBB_A1498 PF13520 Amino acid permease VPBB_A1499 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VPBB_A1499 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VPBB_A1499 PF01276 Orn/Lys/Arg decarboxylase, major domain VPBB_A1502 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VPBB_A1502 PF03714 Bacterial pullanase-associated domain VPBB_A1502 PF18494 Pullulanase Ins domain VPBB_A1502 PF17967 Pullulanase N2 domain VPBB_A1502 PF11852 Domain of unknown function (DUF3372) VPBB_A1503 PF04231 Endonuclease I VPBB_A1504 PF16657 Maltogenic Amylase, C-terminal domain VPBB_A1504 PF02903 Alpha amylase, N-terminal ig-like domain VPBB_A1504 PF00128 Alpha amylase, catalytic domain VPBB_A1507 PF02264 LamB porin VPBB_A1508 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VPBB_A1508 PF00128 Alpha amylase, catalytic domain VPBB_A1510 PF07690 Major Facilitator Superfamily VPBB_A1512 PF01551 Peptidase family M23 VPBB_A1512 PF04225 Opacity-associated protein A LysM-like domain VPBB_A1514 PF05193 Peptidase M16 inactive domain VPBB_A1514 PF00675 Insulinase (Peptidase family M16) VPBB_A1515 PF00672 HAMP domain VPBB_A1515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_A1515 PF17200 Single Cache domain 2 VPBB_A1516 PF00005 ABC transporter VPBB_A1517 PF01032 FecCD transport family VPBB_A1518 PF01032 FecCD transport family VPBB_A1519 PF01497 Periplasmic binding protein VPBB_A1520 PF07715 TonB-dependent Receptor Plug Domain VPBB_A1520 PF07660 Secretin and TonB N terminus short domain VPBB_A1520 PF00593 TonB dependent receptor VPBB_A1521 PF07715 TonB-dependent Receptor Plug Domain VPBB_A1521 PF00593 TonB dependent receptor VPBB_A1522 PF00206 Lyase VPBB_A1522 PF02655 ATP-grasp domain VPBB_A1523 PF06276 Ferric iron reductase FhuF-like transporter VPBB_A1523 PF04183 IucA / IucC family VPBB_A1525 PF04183 IucA / IucC family VPBB_A1525 PF06276 Ferric iron reductase FhuF-like transporter VPBB_A1526 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VPBB_A1526 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VPBB_A1527 PF01547 Bacterial extracellular solute-binding protein VPBB_A1528 PF00512 His Kinase A (phospho-acceptor) domain VPBB_A1528 PF08521 Two-component sensor kinase N-terminal VPBB_A1528 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_A1529 PF00486 Transcriptional regulatory protein, C terminal VPBB_A1529 PF00072 Response regulator receiver domain VPBB_A1530 PF02378 Phosphotransferase system, EIIC VPBB_A1530 PF00367 phosphotransferase system, EIIB VPBB_A1533 PF02653 Branched-chain amino acid transport system / permease component VPBB_A1534 PF00005 ABC transporter VPBB_A1535 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VPBB_A1536 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VPBB_A1536 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VPBB_A1537 PF00596 Class II Aldolase and Adducin N-terminal domain VPBB_A1538 PF11762 L-arabinose isomerase C-terminal domain VPBB_A1538 PF02610 L-arabinose isomerase VPBB_A1540 PF12833 Helix-turn-helix domain VPBB_A1540 PF02311 AraC-like ligand binding domain VPBB_A1543 PF02566 OsmC-like protein VPBB_A1544 PF01047 MarR family VPBB_A1545 PF10417 C-terminal domain of 1-Cys peroxiredoxin VPBB_A1545 PF00578 AhpC/TSA family VPBB_A1546 PF07992 Pyridine nucleotide-disulphide oxidoreductase VPBB_A1546 PF13192 Thioredoxin domain VPBB_A1549 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A1549 PF03466 LysR substrate binding domain VPBB_A1550 PF12833 Helix-turn-helix domain VPBB_A1550 PF01965 DJ-1/PfpI family VPBB_A1551 PF04542 Sigma-70 region 2 VPBB_A1551 PF08281 Sigma-70, region 4 VPBB_A1554 PF02743 Cache domain VPBB_A1554 PF00672 HAMP domain VPBB_A1554 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_A1555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_A1555 PF03466 LysR substrate binding domain VPBB_A1556 PF02056 Family 4 glycosyl hydrolase VPBB_A1556 PF11975 Family 4 glycosyl hydrolase C-terminal domain VPBB_A1559 PF03475 3-alpha domain VPBB_A1559 PF03473 MOSC domain VPBB_A1560 PF00271 Helicase conserved C-terminal domain VPBB_A1560 PF00270 DEAD/DEAH box helicase VPBB_A1564 PF06719 AraC-type transcriptional regulator N-terminus VPBB_A1564 PF12833 Helix-turn-helix domain VPBB_A1567 PF00005 ABC transporter VPBB_A1567 PF00664 ABC transporter transmembrane region VPBB_A1569 PF01037 Lrp/AsnC ligand binding domain VPBB_A1575 PF00474 Sodium:solute symporter family VPBB_A1577 PF00171 Aldehyde dehydrogenase family VPBB_A1577 PF01619 Proline dehydrogenase VPBB_A1577 PF14850 DNA-binding domain of Proline dehydrogenase VPBB_A1577 PF18327 Proline utilization A proline dehydrogenase N-terminal domain VPBB_A1578 PF12833 Helix-turn-helix domain VPBB_A1580 PF00512 His Kinase A (phospho-acceptor) domain VPBB_A1580 PF02743 Cache domain VPBB_A1580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_A1581 PF02954 Bacterial regulatory protein, Fis family VPBB_A1581 PF00158 Sigma-54 interaction domain VPBB_A1581 PF00072 Response regulator receiver domain VPBB_A1582 PF00529 HlyD membrane-fusion protein of T1SS VPBB_A1585 PF00664 ABC transporter transmembrane region VPBB_A1585 PF00005 ABC transporter VPBB_A1585 PF03412 Peptidase C39 family VPBB_A1587 PF03358 NADPH-dependent FMN reductase VPBB_A1588 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VPBB_A1589 PF00246 Zinc carboxypeptidase VPBB_A1590 PF01418 Helix-turn-helix domain, rpiR family VPBB_A1590 PF01380 SIS domain VPBB_A1591 PF01380 SIS domain VPBB_A1592 PF02378 Phosphotransferase system, EIIC VPBB_A1592 PF00367 phosphotransferase system, EIIB VPBB_A1593 PF00267 Gram-negative porin VPBB_A1594 PF03575 Peptidase family S51 VPBB_A1596 PF00132 Bacterial transferase hexapeptide (six repeats) VPBB_A1598 PF13718 GNAT acetyltransferase 2 VPBB_A1598 PF05127 Helicase VPBB_A1599 PF02195 ParB-like nuclease domain VPBB_A1599 PF08775 ParB family VPBB_A1600 PF18607 ParA helix turn helix domain VPBB_A1600 PF13614 AAA domain