locus-tag class description H9K48_00005 PF00308 Bacterial dnaA protein H9K48_00005 PF08299 Bacterial dnaA protein helix-turn-helix H9K48_00005 PF11638 DnaA N-terminal domain H9K48_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain H9K48_00010 PF02767 DNA polymerase III beta subunit, central domain H9K48_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain H9K48_00015 PF02463 RecF/RecN/SMC N terminal domain H9K48_00020 PF01751 Toprim domain H9K48_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_00020 PF18053 DNA gyrase B subunit insert domain H9K48_00020 PF00986 DNA gyrase B subunit, carboxyl terminus H9K48_00020 PF00204 DNA gyrase B H9K48_00030 PF00011 Hsp20/alpha crystallin family H9K48_00035 PF00155 Aminotransferase class I and II H9K48_00040 PF00128 Alpha amylase, catalytic domain H9K48_00045 PF05746 DALR anticodon binding domain H9K48_00045 PF02092 Glycyl-tRNA synthetase beta subunit H9K48_00050 PF02091 Glycyl-tRNA synthetase alpha subunit H9K48_00055 PF01169 Uncharacterized protein family UPF0016 H9K48_00065 PF01206 Sulfurtransferase TusA H9K48_00075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_00075 PF03466 LysR substrate binding domain H9K48_00080 PF08240 Alcohol dehydrogenase GroES-like domain H9K48_00080 PF00107 Zinc-binding dehydrogenase H9K48_00085 PF02803 Thiolase, C-terminal domain H9K48_00085 PF00108 Thiolase, N-terminal domain H9K48_00090 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain H9K48_00090 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain H9K48_00090 PF00378 Enoyl-CoA hydratase/isomerase H9K48_00095 PF09186 Domain of unknown function (DUF1949) H9K48_00095 PF01205 Uncharacterized protein family UPF0029 H9K48_00100 PF02386 Cation transport protein H9K48_00105 PF12724 Flavodoxin domain H9K48_00145 PF02537 CrcB-like protein, Camphor Resistance (CrcB) H9K48_00150 PF01964 Radical SAM ThiC family H9K48_00150 PF13667 ThiC-associated domain H9K48_00155 PF02581 Thiamine monophosphate synthase H9K48_00160 PF00899 ThiF family H9K48_00165 PF02597 ThiS family H9K48_00170 PF05690 Thiazole biosynthesis protein ThiG H9K48_00175 PF04055 Radical SAM superfamily H9K48_00175 PF06968 Biotin and Thiamin Synthesis associated domain H9K48_00180 PF01321 Creatinase/Prolidase N-terminal domain H9K48_00180 PF00557 Metallopeptidase family M24 H9K48_00180 PF01321 Creatinase/Prolidase N-terminal domain H9K48_00180 PF00557 Metallopeptidase family M24 H9K48_00185 PF03466 LysR substrate binding domain H9K48_00185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_00190 PF07690 Major Facilitator Superfamily H9K48_00210 PF05114 Protein of unknown function (DUF692) H9K48_00220 PF00580 UvrD/REP helicase N-terminal domain H9K48_00220 PF13361 UvrD-like helicase C-terminal domain H9K48_00230 PF01810 LysE type translocator H9K48_00240 PF00892 EamA-like transporter family H9K48_00245 PF00570 HRDC domain H9K48_00245 PF16124 RecQ zinc-binding H9K48_00245 PF09382 RQC domain H9K48_00245 PF00270 DEAD/DEAH box helicase H9K48_00245 PF00271 Helicase conserved C-terminal domain H9K48_00255 PF02592 Putative vitamin uptake transporter H9K48_00260 PF02541 Ppx/GppA phosphatase family H9K48_00265 PF00270 DEAD/DEAH box helicase H9K48_00265 PF00271 Helicase conserved C-terminal domain H9K48_00270 PF00085 Thioredoxin H9K48_00275 PF07497 Rho termination factor, RNA-binding domain H9K48_00275 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain H9K48_00275 PF07498 Rho termination factor, N-terminal domain H9K48_00285 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase H9K48_00290 PF00111 2Fe-2S iron-sulfur cluster binding domain H9K48_00295 PF00175 Oxidoreductase NAD-binding domain H9K48_00335 PF07219 HemY protein N-terminus H9K48_00340 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase H9K48_00345 PF02602 Uroporphyrinogen-III synthase HemD H9K48_00350 PF03900 Porphobilinogen deaminase, C-terminal domain H9K48_00350 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain H9K48_00355 PF12633 Adenylate cyclase NT domain H9K48_00355 PF01295 Adenylate cyclase, class-I H9K48_00360 PF01491 Frataxin-like domain H9K48_00370 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain H9K48_00370 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain H9K48_00375 PF01678 Diaminopimelate epimerase H9K48_00385 PF00589 Phage integrase family H9K48_00385 PF02899 Phage integrase, N-terminal SAM-like domain H9K48_00390 PF13419 Haloacid dehalogenase-like hydrolase H9K48_00395 PF00990 Diguanylate cyclase, GGDEF domain H9K48_00395 PF08495 FIST N domain H9K48_00395 PF10442 FIST C domain H9K48_00395 PF00563 EAL domain H9K48_00400 PF03942 DTW domain H9K48_00420 PF12146 Serine aminopeptidase, S33 H9K48_00425 PF01810 LysE type translocator H9K48_00430 PF00563 EAL domain H9K48_00430 PF08668 HDOD domain H9K48_00435 PF01022 Bacterial regulatory protein, arsR family H9K48_00440 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain H9K48_00440 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain H9K48_00490 PF01914 MarC family integral membrane protein H9K48_00505 PF00448 SRP54-type protein, GTPase domain H9K48_00505 PF02881 SRP54-type protein, helical bundle domain H9K48_00510 PF00005 ABC transporter H9K48_00515 PF18075 FtsX extracellular domain H9K48_00520 PF04545 Sigma-70, region 4 H9K48_00520 PF04542 Sigma-70 region 2 H9K48_00520 PF00140 Sigma-70 factor, region 1.2 H9K48_00525 PF00581 Rhodanese-like domain H9K48_00530 PF01694 Rhomboid family H9K48_00530 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease H9K48_00535 PF03748 Flagellar basal body-associated protein FliL H9K48_00540 PF04345 Chorismate lyase H9K48_00545 PF01040 UbiA prenyltransferase family H9K48_00550 PF01553 Acyltransferase H9K48_00555 PF01726 LexA DNA binding domain H9K48_00555 PF00717 Peptidase S24-like H9K48_00560 PF04072 Leucine carboxyl methyltransferase H9K48_00565 PF01554 MatE H9K48_00570 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain H9K48_00570 PF07992 Pyridine nucleotide-disulphide oxidoreductase H9K48_00575 PF00440 Bacterial regulatory proteins, tetR family H9K48_00585 PF05958 tRNA (Uracil-5-)-methyltransferase H9K48_00590 PF07715 TonB-dependent Receptor Plug Domain H9K48_00590 PF00593 TonB dependent receptor H9K48_00600 PF01177 Asp/Glu/Hydantoin racemase H9K48_00655 PF13091 PLD-like domain H9K48_00665 PF01565 FAD binding domain H9K48_00665 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain H9K48_00670 PF08279 HTH domain H9K48_00670 PF02237 Biotin protein ligase C terminal domain H9K48_00670 PF03099 Biotin/lipoate A/B protein ligase family H9K48_00675 PF00485 Phosphoribulokinase / Uridine kinase family H9K48_00700 PF03143 Elongation factor Tu C-terminal domain H9K48_00700 PF03144 Elongation factor Tu domain 2 H9K48_00700 PF00009 Elongation factor Tu GTP binding domain H9K48_00705 PF00584 SecE/Sec61-gamma subunits of protein translocation complex H9K48_00710 PF02357 Transcription termination factor nusG H9K48_00710 PF00467 KOW motif H9K48_00715 PF03946 Ribosomal protein L11, N-terminal domain H9K48_00715 PF00298 Ribosomal protein L11, RNA binding domain H9K48_00720 PF00687 Ribosomal protein L1p/L10e family H9K48_00725 PF00466 Ribosomal protein L10 H9K48_00730 PF00542 Ribosomal protein L7/L12 C-terminal domain H9K48_00730 PF16320 Ribosomal protein L7/L12 dimerisation domain H9K48_00735 PF04563 RNA polymerase beta subunit H9K48_00735 PF04561 RNA polymerase Rpb2, domain 2 H9K48_00735 PF04565 RNA polymerase Rpb2, domain 3 H9K48_00735 PF10385 RNA polymerase beta subunit external 1 domain H9K48_00735 PF00562 RNA polymerase Rpb2, domain 6 H9K48_00735 PF04560 RNA polymerase Rpb2, domain 7 H9K48_00740 PF04998 RNA polymerase Rpb1, domain 5 H9K48_00740 PF05000 RNA polymerase Rpb1, domain 4 H9K48_00740 PF00623 RNA polymerase Rpb1, domain 2 H9K48_00740 PF04997 RNA polymerase Rpb1, domain 1 H9K48_00740 PF04983 RNA polymerase Rpb1, domain 3 H9K48_00745 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ H9K48_00750 PF00293 NUDIX domain H9K48_00750 PF09297 NADH pyrophosphatase zinc ribbon domain H9K48_00765 PF01208 Uroporphyrinogen decarboxylase (URO-D) H9K48_00770 PF03167 Uracil DNA glycosylase superfamily H9K48_00775 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain H9K48_00780 PF04222 Protein of unknown function (DUF416) H9K48_00785 PF01595 Cyclin M transmembrane N-terminal domain H9K48_00785 PF00571 CBS domain H9K48_00790 PF00216 Bacterial DNA-binding protein H9K48_00800 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain H9K48_00800 PF02843 Phosphoribosylglycinamide synthetase, C domain H9K48_00800 PF02844 Phosphoribosylglycinamide synthetase, N domain H9K48_00805 PF02142 MGS-like domain H9K48_00805 PF01808 AICARFT/IMPCHase bienzyme H9K48_00810 PF13411 MerR HTH family regulatory protein H9K48_00815 PF18500 CadC C-terminal domain 1 H9K48_00815 PF00486 Transcriptional regulatory protein, C terminal H9K48_00820 PF13520 Amino acid permease H9K48_00825 PF01276 Orn/Lys/Arg decarboxylase, major domain H9K48_00825 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain H9K48_00825 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain H9K48_00895 PF00990 Diguanylate cyclase, GGDEF domain H9K48_00895 PF05230 MASE2 domain H9K48_00900 PF12848 ABC transporter H9K48_00900 PF00005 ABC transporter H9K48_00905 PF07690 Major Facilitator Superfamily H9K48_00910 PF02954 Bacterial regulatory protein, Fis family H9K48_00915 PF01207 Dihydrouridine synthase (Dus) H9K48_00925 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain H9K48_00925 PF00289 Biotin carboxylase, N-terminal domain H9K48_00925 PF02785 Biotin carboxylase C-terminal domain H9K48_00930 PF00364 Biotin-requiring enzyme H9K48_00935 PF01220 Dehydroquinase class II H9K48_00940 PF13193 AMP-binding enzyme C-terminal domain H9K48_00940 PF00501 AMP-binding enzyme H9K48_00940 PF16177 Acetyl-coenzyme A synthetase N-terminus H9K48_00955 PF12832 MFS_1 like family H9K48_00960 PF00072 Response regulator receiver domain H9K48_00960 PF01627 Hpt domain H9K48_00960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_00960 PF00672 HAMP domain H9K48_00960 PF00512 His Kinase A (phospho-acceptor) domain H9K48_00965 PF10415 Fumarase C C-terminus H9K48_00965 PF00206 Lyase H9K48_00980 PF00474 Sodium:solute symporter family H9K48_00990 PF03471 Transporter associated domain H9K48_00990 PF00999 Sodium/hydrogen exchanger family H9K48_00990 PF02080 TrkA-C domain H9K48_00995 PF00196 Bacterial regulatory proteins, luxR family H9K48_00995 PF00072 Response regulator receiver domain H9K48_01000 PF02683 Cytochrome C biogenesis protein transmembrane region H9K48_01000 PF11412 Disulphide bond corrector protein DsbC H9K48_01005 PF03605 Anaerobic c4-dicarboxylate membrane transporter H9K48_01010 PF10415 Fumarase C C-terminus H9K48_01010 PF00206 Lyase H9K48_01015 PF04186 FxsA cytoplasmic membrane protein H9K48_01020 PF00588 SpoU rRNA Methylase family H9K48_01025 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain H9K48_01025 PF02777 Iron/manganese superoxide dismutases, C-terminal domain H9K48_01030 PF16527 Two-component sensor protein CpxA, periplasmic domain H9K48_01030 PF00672 HAMP domain H9K48_01030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_01030 PF00512 His Kinase A (phospho-acceptor) domain H9K48_01035 PF00486 Transcriptional regulatory protein, C terminal H9K48_01035 PF00072 Response regulator receiver domain H9K48_01040 PF07813 LTXXQ motif family protein H9K48_01045 PF01545 Cation efflux family H9K48_01045 PF16916 Dimerisation domain of Zinc Transporter H9K48_01050 PF00365 Phosphofructokinase H9K48_01055 PF01554 MatE H9K48_01060 PF00166 Chaperonin 10 Kd subunit H9K48_01065 PF00118 TCP-1/cpn60 chaperonin family H9K48_01075 PF02308 MgtC family H9K48_01080 PF00842 Alanine racemase, C-terminal domain H9K48_01080 PF01168 Alanine racemase, N-terminal domain H9K48_01085 PF04055 Radical SAM superfamily H9K48_01090 PF08207 Elongation factor P (EF-P) KOW-like domain H9K48_01090 PF01132 Elongation factor P (EF-P) OB domain H9K48_01090 PF09285 Elongation factor P, C-terminal H9K48_01100 PF02313 Fumarate reductase subunit D H9K48_01105 PF02300 Fumarate reductase subunit C H9K48_01110 PF13085 2Fe-2S iron-sulfur cluster binding domain H9K48_01110 PF13183 4Fe-4S dicluster domain H9K48_01115 PF00890 FAD binding domain H9K48_01115 PF02910 Fumarate reductase flavoprotein C-term H9K48_01120 PF00152 tRNA synthetases class II (D, K and N) H9K48_01130 PF08360 QacR-like protein, C-terminal region H9K48_01130 PF00440 Bacterial regulatory proteins, tetR family H9K48_01140 PF01551 Peptidase family M23 H9K48_01145 PF00132 Bacterial transferase hexapeptide (six repeats) H9K48_01145 PF06426 Serine acetyltransferase, N-terminal H9K48_01150 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus H9K48_01150 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus H9K48_01155 PF02556 Preprotein translocase subunit SecB H9K48_01160 PF00581 Rhodanese-like domain H9K48_01165 PF06415 BPG-independent PGAM N-terminus (iPGM_N) H9K48_01165 PF01676 Metalloenzyme superfamily H9K48_01175 PF00672 HAMP domain H9K48_01175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9K48_01180 PF00939 Sodium:sulfate symporter transmembrane region H9K48_01185 PF02666 Phosphatidylserine decarboxylase H9K48_01190 PF03193 RsgA GTPase H9K48_01195 PF00929 Exonuclease H9K48_01265 PF08331 Domain of unknown function (DUF1730) H9K48_01270 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE H9K48_01275 PF01520 N-acetylmuramoyl-L-alanine amidase H9K48_01280 PF01119 DNA mismatch repair protein, C-terminal domain H9K48_01280 PF08676 MutL C terminal dimerisation domain H9K48_01290 PF17209 Hfq protein H9K48_01295 PF13167 GTP-binding GTPase N-terminal H9K48_01295 PF01926 50S ribosome-binding GTPase H9K48_01295 PF16360 GTP-binding GTPase Middle Region H9K48_01300 PF01145 SPFH domain / Band 7 family H9K48_01300 PF12221 Bacterial membrane protein N terminal H9K48_01305 PF01145 SPFH domain / Band 7 family H9K48_01310 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) H9K48_01315 PF00709 Adenylosuccinate synthetase H9K48_01320 PF08238 Sel1 repeat H9K48_01325 PF00042 Globin H9K48_01325 PF00970 Oxidoreductase FAD-binding domain H9K48_01325 PF00175 Oxidoreductase NAD-binding domain H9K48_01330 PF02082 Transcriptional regulator H9K48_01335 PF17876 Cold shock domain H9K48_01335 PF00575 S1 RNA binding domain H9K48_01335 PF00773 RNB domain H9K48_01335 PF08206 Ribonuclease B OB domain H9K48_01335 PF08461 Ribonuclease R winged-helix domain H9K48_01340 PF08032 RNA 2'-O ribose methyltransferase substrate binding H9K48_01340 PF00588 SpoU rRNA Methylase family H9K48_01345 PF13419 Haloacid dehalogenase-like hydrolase H9K48_01350 PF00579 tRNA synthetases class I (W and Y) H9K48_01365 PF00117 Glutamine amidotransferase class-I H9K48_01370 PF00202 Aminotransferase class-III H9K48_01375 PF04958 Arginine N-succinyltransferase beta subunit H9K48_01380 PF00171 Aldehyde dehydrogenase family H9K48_01390 PF00027 Cyclic nucleotide-binding domain H9K48_01390 PF13545 Crp-like helix-turn-helix domain H9K48_01395 PF00485 Phosphoribulokinase / Uridine kinase family H9K48_01400 PF06794 Uncharacterised protein family (UPF0270) H9K48_01405 PF00561 alpha/beta hydrolase fold H9K48_01415 PF12848 ABC transporter H9K48_01415 PF00005 ABC transporter H9K48_01420 PF02525 Flavodoxin-like fold H9K48_01425 PF02254 TrkA-N domain H9K48_01425 PF00999 Sodium/hydrogen exchanger family H9K48_01435 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase H9K48_01440 PF01112 Asparaginase H9K48_01445 PF04102 SlyX H9K48_01455 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase H9K48_01455 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase H9K48_01460 PF08348 YheO-like PAS domain H9K48_01460 PF13309 HTH domain H9K48_01465 PF02635 DsrE/DsrF-like family H9K48_01470 PF02635 DsrE/DsrF-like family H9K48_01475 PF04077 DsrH like protein H9K48_01480 PF00164 Ribosomal protein S12/S23 H9K48_01485 PF00177 Ribosomal protein S7p/S5e H9K48_01490 PF00679 Elongation factor G C-terminus H9K48_01490 PF03764 Elongation factor G, domain IV H9K48_01490 PF00009 Elongation factor Tu GTP binding domain H9K48_01490 PF03144 Elongation factor Tu domain 2 H9K48_01490 PF14492 Elongation Factor G, domain II H9K48_01495 PF00009 Elongation factor Tu GTP binding domain H9K48_01495 PF03143 Elongation factor Tu C-terminal domain H9K48_01495 PF03144 Elongation factor Tu domain 2 H9K48_01500 PF04324 BFD-like [2Fe-2S] binding domain H9K48_01505 PF00210 Ferritin-like domain H9K48_01510 PF03949 Malic enzyme, NAD binding domain H9K48_01510 PF00390 Malic enzyme, N-terminal domain H9K48_01515 PF01340 Met Apo-repressor, MetJ H9K48_01520 PF01053 Cys/Met metabolism PLP-dependent enzyme H9K48_01525 PF00696 Amino acid kinase family H9K48_01525 PF00742 Homoserine dehydrogenase H9K48_01525 PF03447 Homoserine dehydrogenase, NAD binding domain H9K48_01530 PF02219 Methylenetetrahydrofolate reductase H9K48_01540 PF00311 Phosphoenolpyruvate carboxylase H9K48_01545 PF07687 Peptidase dimerisation domain H9K48_01545 PF01546 Peptidase family M20/M25/M40 H9K48_01550 PF01118 Semialdehyde dehydrogenase, NAD binding domain H9K48_01550 PF02774 Semialdehyde dehydrogenase, dimerisation domain H9K48_01555 PF00696 Amino acid kinase family H9K48_01560 PF00764 Arginosuccinate synthase H9K48_01565 PF00583 Acetyltransferase (GNAT) family H9K48_01565 PF14698 Argininosuccinate lyase C-terminal H9K48_01565 PF00206 Lyase H9K48_01575 PF08534 Redoxin H9K48_01575 PF00462 Glutaredoxin H9K48_01580 PF03466 LysR substrate binding domain H9K48_01580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_01585 PF17092 Penicillin-binding protein OB-like domain H9K48_01585 PF00912 Transglycosylase H9K48_01585 PF00905 Penicillin binding protein transpeptidase domain H9K48_01595 PF05137 Fimbrial assembly protein (PilN) H9K48_01605 PF04351 Pilus assembly protein, PilP H9K48_01610 PF11741 AMIN domain H9K48_01610 PF00263 Bacterial type II and III secretion system protein H9K48_01610 PF03958 Bacterial type II/III secretion system short domain H9K48_01610 PF07660 Secretin and TonB N terminus short domain H9K48_01615 PF01202 Shikimate kinase H9K48_01620 PF01761 3-dehydroquinate synthase H9K48_01630 PF02086 D12 class N6 adenine-specific DNA methyltransferase H9K48_01635 PF00834 Ribulose-phosphate 3 epimerase family H9K48_01640 PF01250 Ribosomal protein S6 H9K48_01645 PF00436 Single-strand binding protein family H9K48_01650 PF01084 Ribosomal protein S18 H9K48_01655 PF03948 Ribosomal protein L9, C-terminal domain H9K48_01655 PF01281 Ribosomal protein L9, N-terminal domain H9K48_01665 PF03796 DnaB-like helicase C terminal domain H9K48_01665 PF00772 DnaB-like helicase N terminal domain H9K48_01670 PF01168 Alanine racemase, N-terminal domain H9K48_01670 PF00842 Alanine racemase, C-terminal domain H9K48_01680 PF01894 Uncharacterised protein family UPF0047 H9K48_01685 PF00342 Phosphoglucose isomerase H9K48_01695 PF01475 Ferric uptake regulator family H9K48_01700 PF01207 Dihydrouridine synthase (Dus) H9K48_01720 PF00667 FAD binding domain H9K48_01720 PF00258 Flavodoxin H9K48_01720 PF00175 Oxidoreductase NAD-binding domain H9K48_01725 PF01077 Nitrite and sulphite reductase 4Fe-4S domain H9K48_01725 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain H9K48_01730 PF01507 Phosphoadenosine phosphosulfate reductase family H9K48_01790 PF00999 Sodium/hydrogen exchanger family H9K48_01795 PF02310 B12 binding domain H9K48_01795 PF02607 B12 binding domain H9K48_01795 PF02965 Vitamin B12 dependent methionine synthase, activation domain H9K48_01795 PF00809 Pterin binding enzyme H9K48_01795 PF02574 Homocysteine S-methyltransferase H9K48_01800 PF01842 ACT domain H9K48_01800 PF00696 Amino acid kinase family H9K48_01805 PF00266 Aminotransferase class-V H9K48_01815 PF17760 UvrA interaction domain H9K48_01815 PF17755 UvrA DNA-binding domain H9K48_01815 PF00005 ABC transporter H9K48_01820 PF00483 Nucleotidyl transferase H9K48_01825 PF00196 Bacterial regulatory proteins, luxR family H9K48_01830 PF00436 Single-strand binding protein family H9K48_01835 PF17157 Gammaproteobacterial periplasmic sensor domain H9K48_01835 PF00990 Diguanylate cyclase, GGDEF domain H9K48_01835 PF00563 EAL domain H9K48_01855 PF03958 Bacterial type II/III secretion system short domain H9K48_01855 PF11741 AMIN domain H9K48_01855 PF07660 Secretin and TonB N terminus short domain H9K48_01855 PF00263 Bacterial type II and III secretion system protein H9K48_01860 PF13401 AAA domain H9K48_01860 PF01471 Putative peptidoglycan binding domain H9K48_01870 PF00437 Type II/IV secretion system protein H9K48_01870 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain H9K48_01875 PF00482 Type II secretion system (T2SS), protein F H9K48_01885 PF00114 Pilin (bacterial filament) H9K48_01885 PF07963 Prokaryotic N-terminal methylation motif H9K48_01925 PF04085 rod shape-determining protein MreC H9K48_01930 PF04093 rod shape-determining protein MreD H9K48_01935 PF02545 Maf-like protein H9K48_01940 PF10150 Ribonuclease E/G family H9K48_01940 PF00575 S1 RNA binding domain H9K48_01945 PF13502 AsmA-like C-terminal region H9K48_01945 PF13116 Protein of unknown function H9K48_01950 PF00795 Carbon-nitrogen hydrolase H9K48_01955 PF01523 Putative modulator of DNA gyrase H9K48_01960 PF13638 PIN domain H9K48_01960 PF02562 PhoH-like protein H9K48_01965 PF12137 RNA polymerase recycling family C-terminal H9K48_01965 PF18337 RapA N-terminal Tudor like domain H9K48_01965 PF00271 Helicase conserved C-terminal domain H9K48_01965 PF00176 SNF2 family N-terminal domain H9K48_01965 PF18339 RapA N-terminal Tudor like domain 1 H9K48_01975 PF00849 RNA pseudouridylate synthase H9K48_01980 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain H9K48_01980 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain H9K48_01985 PF04751 Protein of unknown function (DUF615) H9K48_01990 PF01523 Putative modulator of DNA gyrase H9K48_01995 PF01769 Divalent cation transporter H9K48_01995 PF03448 MgtE intracellular N domain H9K48_01995 PF00571 CBS domain H9K48_02000 PF00381 PTS HPr component phosphorylation site H9K48_02005 PF03668 P-loop ATPase protein family H9K48_02010 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 H9K48_02015 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein H9K48_02020 PF00309 Sigma-54 factor, Activator interacting domain (AID) H9K48_02020 PF04963 Sigma-54 factor, core binding domain H9K48_02020 PF04552 Sigma-54, DNA binding domain H9K48_02025 PF00005 ABC transporter H9K48_02025 PF12399 Branched-chain amino acid ATP-binding cassette transporter H9K48_02030 PF03968 OstA-like protein H9K48_02040 PF00571 CBS domain H9K48_02040 PF01380 SIS domain H9K48_02045 PF01699 Sodium/calcium exchanger protein H9K48_02050 PF00005 ABC transporter H9K48_02055 PF02405 Permease MlaE H9K48_02060 PF02470 MlaD protein H9K48_02065 PF05494 MlaC protein H9K48_02075 PF01722 BolA-like protein H9K48_02080 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) H9K48_02085 PF01553 Acyltransferase H9K48_02090 PF01042 Endoribonuclease L-PSP H9K48_02095 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain H9K48_02095 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain H9K48_02100 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain H9K48_02100 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain H9K48_02110 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain H9K48_02110 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain H9K48_02120 PF06877 Regulator of ribonuclease activity B H9K48_02130 PF00583 Acetyltransferase (GNAT) family H9K48_02140 PF08264 Anticodon-binding domain of tRNA H9K48_02140 PF00133 tRNA synthetases class I (I, L, M and V) H9K48_02140 PF10458 Valyl tRNA synthetase tRNA binding arm H9K48_02145 PF04364 DNA polymerase III chi subunit, HolC H9K48_02150 PF00883 Cytosol aminopeptidase family, catalytic domain H9K48_02150 PF02789 Cytosol aminopeptidase family, N-terminal domain H9K48_02155 PF03739 Lipopolysaccharide export system permease LptF/LptG H9K48_02160 PF03739 Lipopolysaccharide export system permease LptF/LptG H9K48_02170 PF10011 Predicted membrane protein (DUF2254) H9K48_02180 PF00106 short chain dehydrogenase H9K48_02190 PF00529 HlyD membrane-fusion protein of T1SS H9K48_02190 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H9K48_02300 PF00145 C-5 cytosine-specific DNA methylase H9K48_02310 PF01522 Polysaccharide deacetylase H9K48_02315 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit H9K48_02320 PF02378 Phosphotransferase system, EIIC H9K48_02325 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit H9K48_02330 PF02056 Family 4 glycosyl hydrolase H9K48_02330 PF11975 Family 4 glycosyl hydrolase C-terminal domain H9K48_02335 PF04794 YdjC-like protein H9K48_02340 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family H9K48_02340 PF00356 Bacterial regulatory proteins, lacI family H9K48_02345 PF00072 Response regulator receiver domain H9K48_02390 PF00171 Aldehyde dehydrogenase family H9K48_02420 PF17200 Single Cache domain 2 H9K48_02420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9K48_02420 PF00672 HAMP domain H9K48_02460 PF01464 Transglycosylase SLT domain H9K48_02460 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain H9K48_02465 PF04362 Bacterial Fe(2+) trafficking H9K48_02470 PF00633 Helix-hairpin-helix motif H9K48_02470 PF00730 HhH-GPD superfamily base excision DNA repair protein H9K48_02470 PF14815 NUDIX domain H9K48_02475 PF02390 Putative methyltransferase H9K48_02480 PF02086 D12 class N6 adenine-specific DNA methyltransferase H9K48_02485 PF04960 Glutaminase H9K48_02490 PF06969 HemN C-terminal domain H9K48_02490 PF04055 Radical SAM superfamily H9K48_02495 PF01725 Ham1 family H9K48_02505 PF02594 Uncharacterised ACR, YggU family COG1872 H9K48_02510 PF02325 YGGT family H9K48_02515 PF14748 Pyrroline-5-carboxylate reductase dimerisation H9K48_02515 PF03807 NADP oxidoreductase coenzyme F420-dependent H9K48_02520 PF01168 Alanine racemase, N-terminal domain H9K48_02525 PF00437 Type II/IV secretion system protein H9K48_02530 PF00437 Type II/IV secretion system protein H9K48_02535 PF03652 Holliday junction resolvase H9K48_02540 PF02622 Uncharacterized ACR, COG1678 H9K48_02545 PF02951 Prokaryotic glutathione synthetase, N-terminal domain H9K48_02545 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain H9K48_02550 PF04452 RNA methyltransferase H9K48_02555 PF04231 Endonuclease I H9K48_02560 PF10263 SprT-like family H9K48_02560 PF17283 SprT-like zinc ribbon domain H9K48_02570 PF00438 S-adenosylmethionine synthetase, N-terminal domain H9K48_02570 PF02772 S-adenosylmethionine synthetase, central domain H9K48_02570 PF02773 S-adenosylmethionine synthetase, C-terminal domain H9K48_02575 PF02779 Transketolase, pyrimidine binding domain H9K48_02575 PF02780 Transketolase, C-terminal domain H9K48_02575 PF00456 Transketolase, thiamine diphosphate binding domain H9K48_02580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_02580 PF03466 LysR substrate binding domain H9K48_02585 PF07715 TonB-dependent Receptor Plug Domain H9K48_02585 PF00593 TonB dependent receptor H9K48_02590 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain H9K48_02590 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain H9K48_02595 PF00162 Phosphoglycerate kinase H9K48_02600 PF01116 Fructose-bisphosphate aldolase class-II H9K48_02605 PF05552 Conserved TM helix H9K48_02605 PF00924 Mechanosensitive ion channel H9K48_02610 PF04073 Aminoacyl-tRNA editing domain H9K48_02615 PF01810 LysE type translocator H9K48_02620 PF03466 LysR substrate binding domain H9K48_02620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_02625 PF04402 Protein of unknown function (DUF541) H9K48_02630 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain H9K48_02630 PF01842 ACT domain H9K48_02630 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain H9K48_02635 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) H9K48_02640 PF01812 5-formyltetrahydrofolate cyclo-ligase family H9K48_02650 PF05164 Cell division protein ZapA H9K48_02655 PF03695 Uncharacterised protein family (UPF0149) H9K48_02660 PF01494 FAD binding domain H9K48_02665 PF01494 FAD binding domain H9K48_02680 PF01571 Aminomethyltransferase folate-binding domain H9K48_02685 PF03937 Flavinator of succinate dehydrogenase H9K48_02690 PF00890 FAD binding domain H9K48_02690 PF02910 Fumarate reductase flavoprotein C-term H9K48_02695 PF04542 Sigma-70 region 2 H9K48_02695 PF08281 Sigma-70, region 4 H9K48_02700 PF03872 Anti sigma-E protein RseA, N-terminal domain H9K48_02700 PF03873 Anti sigma-E protein RseA, C-terminal domain H9K48_02705 PF03888 MucB/RseB N-terminal domain H9K48_02705 PF17188 MucB/RseB C-terminal domain H9K48_02715 PF00679 Elongation factor G C-terminus H9K48_02715 PF00009 Elongation factor Tu GTP binding domain H9K48_02715 PF03144 Elongation factor Tu domain 2 H9K48_02715 PF06421 GTP-binding protein LepA C-terminus H9K48_02720 PF10502 Signal peptidase, peptidase S26 H9K48_02725 PF00035 Double-stranded RNA binding motif H9K48_02725 PF14622 Ribonuclease-III-like H9K48_02730 PF07650 KH domain H9K48_02730 PF01926 50S ribosome-binding GTPase H9K48_02735 PF11967 Recombination protein O N terminal H9K48_02735 PF02565 Recombination protein O C terminal H9K48_02740 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ H9K48_02745 PF01648 4'-phosphopantetheinyl transferase superfamily H9K48_02750 PF00672 HAMP domain H9K48_02750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_02750 PF00512 His Kinase A (phospho-acceptor) domain H9K48_02750 PF01627 Hpt domain H9K48_02750 PF00072 Response regulator receiver domain H9K48_02750 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) H9K48_02755 PF01938 TRAM domain H9K48_02755 PF05958 tRNA (Uracil-5-)-methyltransferase H9K48_02760 PF04607 Region found in RelA / SpoT proteins H9K48_02760 PF02824 TGS domain H9K48_02760 PF13291 ACT domain H9K48_02765 PF03819 MazG nucleotide pyrophosphohydrolase domain H9K48_02770 PF06418 CTP synthase N-terminus H9K48_02770 PF00117 Glutamine amidotransferase class-I H9K48_02775 PF00113 Enolase, C-terminal TIM barrel domain H9K48_02775 PF03952 Enolase, N-terminal domain H9K48_02780 PF04977 Septum formation initiator H9K48_02785 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase H9K48_02790 PF02542 YgbB family H9K48_02795 PF01142 tRNA pseudouridine synthase D (TruD) H9K48_02800 PF01975 Survival protein SurE H9K48_02810 PF01476 LysM domain H9K48_02810 PF01551 Peptidase family M23 H9K48_02815 PF04542 Sigma-70 region 2 H9K48_02815 PF04545 Sigma-70, region 4 H9K48_02815 PF04539 Sigma-70 region 3 H9K48_02815 PF00140 Sigma-70 factor, region 1.2 H9K48_02820 PF05192 MutS domain III H9K48_02820 PF01624 MutS domain I H9K48_02820 PF05188 MutS domain II H9K48_02820 PF05190 MutS family domain IV H9K48_02820 PF00488 MutS domain V H9K48_02825 PF02464 Competence-damaged protein H9K48_02830 PF00154 recA bacterial DNA recombination protein H9K48_02835 PF02631 RecX family H9K48_02840 PF02272 DHHA1 domain H9K48_02840 PF01411 tRNA synthetases class II (A) H9K48_02840 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain H9K48_02845 PF00696 Amino acid kinase family H9K48_02845 PF01842 ACT domain H9K48_02845 PF13840 ACT domain H9K48_02850 PF02599 Global regulator protein family H9K48_02905 PF04277 Oxaloacetate decarboxylase, gamma chain H9K48_02910 PF00682 HMGL-like H9K48_02910 PF02436 Conserved carboxylase domain H9K48_02910 PF00364 Biotin-requiring enzyme H9K48_02915 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit H9K48_02920 PF08240 Alcohol dehydrogenase GroES-like domain H9K48_02920 PF00107 Zinc-binding dehydrogenase H9K48_02925 PF09335 SNARE associated Golgi protein H9K48_02930 PF00675 Insulinase (Peptidase family M16) H9K48_02930 PF05193 Peptidase M16 inactive domain H9K48_02935 PF04262 Glutamate-cysteine ligase H9K48_02945 PF02664 S-Ribosylhomocysteinase (LuxS) H9K48_02950 PF00571 CBS domain H9K48_02950 PF03471 Transporter associated domain H9K48_02950 PF01595 Cyclin M transmembrane N-terminal domain H9K48_02955 PF01578 Cytochrome C assembly protein H9K48_02960 PF00448 SRP54-type protein, GTPase domain H9K48_02960 PF02881 SRP54-type protein, helical bundle domain H9K48_02960 PF02978 Signal peptide binding domain H9K48_02965 PF00886 Ribosomal protein S16 H9K48_02970 PF05239 PRC-barrel domain H9K48_02970 PF01782 RimM N-terminal domain H9K48_02975 PF01746 tRNA (Guanine-1)-methyltransferase H9K48_02980 PF01245 Ribosomal protein L19 H9K48_02985 PF03884 DNA gyrase inhibitor YacG H9K48_02990 PF07072 Cell division protein H9K48_02995 PF01121 Dephospho-CoA kinase H9K48_03000 PF06750 Bacterial Peptidase A24 N-terminal domain H9K48_03000 PF01478 Type IV leader peptidase family H9K48_03005 PF00482 Type II secretion system (T2SS), protein F H9K48_03010 PF00437 Type II/IV secretion system protein H9K48_03010 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain H9K48_03015 PF07963 Prokaryotic N-terminal methylation motif H9K48_03015 PF00114 Pilin (bacterial filament) H9K48_03020 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain H9K48_03020 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain H9K48_03025 PF01510 N-acetylmuramoyl-L-alanine amidase H9K48_03030 PF00392 Bacterial regulatory proteins, gntR family H9K48_03030 PF07729 FCD domain H9K48_03035 PF00456 Transketolase, thiamine diphosphate binding domain H9K48_03035 PF17831 Pyruvate dehydrogenase E1 component middle domain H9K48_03040 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) H9K48_03040 PF00364 Biotin-requiring enzyme H9K48_03040 PF02817 e3 binding domain H9K48_03045 PF07992 Pyridine nucleotide-disulphide oxidoreductase H9K48_03045 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain H9K48_03050 PF00440 Bacterial regulatory proteins, tetR family H9K48_03055 PF00156 Phosphoribosyl transferase domain H9K48_03060 PF00484 Carbonic anhydrase H9K48_03065 PF01740 STAS domain H9K48_03065 PF00916 Sulfate permease family H9K48_03070 PF00005 ABC transporter H9K48_03075 PF01061 ABC-2 type transporter H9K48_03080 PF03279 Bacterial lipid A biosynthesis acyltransferase H9K48_03085 PF02569 Pantoate-beta-alanine ligase H9K48_03090 PF02548 Ketopantoate hydroxymethyltransferase H9K48_03095 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) H9K48_03100 PF01743 Poly A polymerase head domain H9K48_03100 PF12626 Polymerase A arginine-rich C-terminus H9K48_03100 PF12627 Probable RNA and SrmB- binding site of polymerase A H9K48_03105 PF00749 tRNA synthetases class I (E and Q), catalytic domain H9K48_03110 PF01258 Prokaryotic dksA/traR C4-type zinc finger H9K48_03115 PF03749 Sugar fermentation stimulation protein RE domain H9K48_03115 PF17746 SfsA N-terminal OB domain H9K48_03120 PF00270 DEAD/DEAH box helicase H9K48_03120 PF04408 Helicase associated domain (HA2) H9K48_03120 PF00271 Helicase conserved C-terminal domain H9K48_03120 PF08482 ATP-dependent helicase C-terminal H9K48_03125 PF00912 Transglycosylase H9K48_03125 PF00905 Penicillin binding protein transpeptidase domain H9K48_03125 PF14814 Bifunctional transglycosylase second domain H9K48_03130 PF01734 Patatin-like phospholipase H9K48_03135 PF00330 Aconitase family (aconitate hydratase) H9K48_03135 PF06434 Aconitate hydratase 2 N-terminus H9K48_03135 PF11791 Aconitate B N-terminal domain H9K48_03140 PF06062 Uncharacterised protein family (UPF0231) H9K48_03145 PF00543 Nitrogen regulatory protein P-II H9K48_03150 PF00909 Ammonium Transporter Family H9K48_03155 PF13416 Bacterial extracellular solute-binding protein H9K48_03165 PF08402 TOBE domain H9K48_03165 PF00005 ABC transporter H9K48_03170 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I H9K48_03170 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II H9K48_03170 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III H9K48_03170 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain H9K48_03175 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain H9K48_03175 PF06165 Glycosyltransferase family 36 H9K48_03180 PF00728 Glycosyl hydrolase family 20, catalytic domain H9K48_03180 PF02838 Glycosyl hydrolase family 20, domain 2 H9K48_03185 PF01869 BadF/BadG/BcrA/BcrD ATPase family H9K48_03195 PF00005 ABC transporter H9K48_03195 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H9K48_03200 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H9K48_03200 PF00005 ABC transporter H9K48_03205 PF12911 N-terminal TM domain of oligopeptide transport permease C H9K48_03205 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_03210 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_03215 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle H9K48_03220 PF00512 His Kinase A (phospho-acceptor) domain H9K48_03220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_03220 PF00072 Response regulator receiver domain H9K48_03220 PF00497 Bacterial extracellular solute-binding proteins, family 3 H9K48_03225 PF05175 Methyltransferase small domain H9K48_03225 PF08468 Methyltransferase small domain N-terminal H9K48_03230 PF01594 AI-2E family transporter H9K48_03235 PF00202 Aminotransferase class-III H9K48_03240 PF01521 Iron-sulphur cluster biosynthesis H9K48_03250 PF00873 AcrB/AcrD/AcrF family H9K48_03255 PF08525 Opacity-associated protein A N-terminal motif H9K48_03255 PF01551 Peptidase family M23 H9K48_03255 PF01476 LysM domain H9K48_03260 PF00579 tRNA synthetases class I (W and Y) H9K48_03270 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family H9K48_03275 PF13609 Gram-negative porin H9K48_03280 PF03449 Transcription elongation factor, N-terminal H9K48_03280 PF01272 Transcription elongation factor, GreA/GreB, C-term H9K48_03285 PF01985 CRS1 / YhbY (CRM) domain H9K48_03290 PF01728 FtsJ-like methyltransferase H9K48_03295 PF01434 Peptidase family M41 H9K48_03295 PF06480 FtsH Extracellular H9K48_03295 PF17862 AAA+ lid domain H9K48_03295 PF00004 ATPase family associated with various cellular activities (AAA) H9K48_03300 PF00809 Pterin binding enzyme H9K48_03305 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III H9K48_03305 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I H9K48_03305 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II H9K48_03305 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain H9K48_03310 PF03840 Preprotein translocase SecG subunit H9K48_03325 PF02576 RimP N-terminal domain H9K48_03325 PF17384 RimP C-terminal SH3 domain H9K48_03330 PF13184 NusA-like KH domain H9K48_03330 PF08529 NusA N-terminal domain H9K48_03330 PF00575 S1 RNA binding domain H9K48_03335 PF08364 Bacterial translation initiation factor IF-2 associated region H9K48_03335 PF11987 Translation-initiation factor 2 H9K48_03335 PF00009 Elongation factor Tu GTP binding domain H9K48_03335 PF04760 Translation initiation factor IF-2, N-terminal region H9K48_03340 PF02033 Ribosome-binding factor A H9K48_03345 PF09157 Pseudouridine synthase II TruB, C-terminal H9K48_03345 PF16198 tRNA pseudouridylate synthase B C-terminal domain H9K48_03345 PF01509 TruB family pseudouridylate synthase (N terminal domain) H9K48_03350 PF00312 Ribosomal protein S15 H9K48_03355 PF00013 KH domain H9K48_03355 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain H9K48_03355 PF01138 3' exoribonuclease family, domain 1 H9K48_03355 PF03725 3' exoribonuclease family, domain 2 H9K48_03355 PF00575 S1 RNA binding domain H9K48_03360 PF13181 Tetratricopeptide repeat H9K48_03360 PF07719 Tetratricopeptide repeat H9K48_03370 PF01554 MatE H9K48_03375 PF01136 Peptidase family U32 H9K48_03380 PF01136 Peptidase family U32 H9K48_03385 PF00563 EAL domain H9K48_03385 PF00990 Diguanylate cyclase, GGDEF domain H9K48_03385 PF03707 Bacterial signalling protein N terminal repeat H9K48_03390 PF02036 SCP-2 sterol transfer family H9K48_03395 PF13508 Acetyltransferase (GNAT) domain H9K48_03415 PF16658 Class II release factor RF3, C-terminal domain H9K48_03415 PF00009 Elongation factor Tu GTP binding domain H9K48_03415 PF03144 Elongation factor Tu domain 2 H9K48_03425 PF01026 TatD related DNase H9K48_03430 PF07670 Nucleoside recognition H9K48_03430 PF07662 Na+ dependent nucleoside transporter C-terminus H9K48_03430 PF01773 Na+ dependent nucleoside transporter N-terminus H9K48_03435 PF01791 DeoC/LacD family aldolase H9K48_03440 PF00591 Glycosyl transferase family, a/b domain H9K48_03440 PF02885 Glycosyl transferase family, helical bundle domain H9K48_03440 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain H9K48_03445 PF01676 Metalloenzyme superfamily H9K48_03450 PF01048 Phosphorylase superfamily H9K48_03460 PF18429 Domain of unknown function (DUF5609) H9K48_03470 PF18073 Rubredoxin metal binding domain H9K48_03475 PF00679 Elongation factor G C-terminus H9K48_03475 PF00009 Elongation factor Tu GTP binding domain H9K48_03475 PF03144 Elongation factor Tu domain 2 H9K48_03475 PF03764 Elongation factor G, domain IV H9K48_03475 PF14492 Elongation Factor G, domain II H9K48_03480 PF03466 LysR substrate binding domain H9K48_03480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_03490 PF00501 AMP-binding enzyme H9K48_03495 PF02805 Metal binding domain of Ada H9K48_03495 PF12833 Helix-turn-helix domain H9K48_03520 PF04972 BON domain H9K48_03520 PF00263 Bacterial type II and III secretion system protein H9K48_03520 PF13629 Pilus formation protein N terminal region H9K48_03550 PF00437 Type II/IV secretion system protein H9K48_03580 PF03466 LysR substrate binding domain H9K48_03580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_03585 PF13520 Amino acid permease H9K48_03590 PF04074 YhcH/YjgK/YiaL H9K48_03595 PF00703 Glycosyl hydrolases family 2 H9K48_03595 PF02836 Glycosyl hydrolases family 2, TIM barrel domain H9K48_03595 PF02837 Glycosyl hydrolases family 2, sugar binding domain H9K48_03595 PF16353 Domain of unknown function(DUF4981) H9K48_03595 PF02929 Beta galactosidase small chain H9K48_03600 PF00356 Bacterial regulatory proteins, lacI family H9K48_03605 PF16363 GDP-mannose 4,6 dehydratase H9K48_03610 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain H9K48_03610 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain H9K48_03615 PF10509 Galactokinase galactose-binding signature H9K48_03615 PF08544 GHMP kinases C terminal H9K48_03615 PF00288 GHMP kinases N terminal domain H9K48_03620 PF01263 Aldose 1-epimerase H9K48_03625 PF00356 Bacterial regulatory proteins, lacI family H9K48_03640 PF00356 Bacterial regulatory proteins, lacI family H9K48_03645 PF01588 Putative tRNA binding domain H9K48_03660 PF01544 CorA-like Mg2+ transporter protein H9K48_03665 PF01266 FAD dependent oxidoreductase H9K48_03665 PF16901 C-terminal domain of alpha-glycerophosphate oxidase H9K48_03670 PF08220 DeoR-like helix-turn-helix domain H9K48_03670 PF00455 DeoR C terminal sensor domain H9K48_03675 PF00370 FGGY family of carbohydrate kinases, N-terminal domain H9K48_03675 PF02782 FGGY family of carbohydrate kinases, C-terminal domain H9K48_03680 PF00230 Major intrinsic protein H9K48_03685 PF07690 Major Facilitator Superfamily H9K48_03690 PF03009 Glycerophosphoryl diester phosphodiesterase family H9K48_03695 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle H9K48_03695 PF14602 Hexapeptide repeat of succinyl-transferase H9K48_03700 PF07130 YebG protein H9K48_03705 PF03466 LysR substrate binding domain H9K48_03705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_03715 PF11893 Domain of unknown function (DUF3413) H9K48_03715 PF00884 Sulfatase H9K48_03720 PF17946 RecC C-terminal domain H9K48_03725 PF13361 UvrD-like helicase C-terminal domain H9K48_03725 PF00580 UvrD/REP helicase N-terminal domain H9K48_03725 PF12705 PD-(D/E)XK nuclease superfamily H9K48_03730 PF13538 UvrD-like helicase C-terminal domain H9K48_03740 PF00696 Amino acid kinase family H9K48_03740 PF00583 Acetyltransferase (GNAT) family H9K48_03750 PF06725 3D domain H9K48_03750 PF03562 MltA specific insert domain H9K48_03755 PF00899 ThiF family H9K48_03760 PF02657 Fe-S metabolism associated domain H9K48_03765 PF00990 Diguanylate cyclase, GGDEF domain H9K48_03765 PF17158 Membrane-associated sensor, integral membrane domain H9K48_03770 PF00266 Aminotransferase class-V H9K48_03775 PF01965 DJ-1/PfpI family H9K48_03780 PF02558 Ketopantoate reductase PanE/ApbA H9K48_03780 PF08546 Ketopantoate reductase PanE/ApbA C terminal H9K48_03785 PF03502 Nucleoside-specific channel-forming protein, Tsx H9K48_03805 PF04542 Sigma-70 region 2 H9K48_03805 PF04545 Sigma-70, region 4 H9K48_03815 PF07690 Major Facilitator Superfamily H9K48_03820 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD H9K48_03825 PF08139 Prokaryotic membrane lipoprotein lipid attachment site H9K48_03825 PF03923 Uncharacterized lipoprotein H9K48_03830 PF05175 Methyltransferase small domain H9K48_03835 PF01722 BolA-like protein H9K48_03840 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) H9K48_03840 PF11973 NQRA C-terminal domain H9K48_03845 PF03116 NQR2, RnfD, RnfE family H9K48_03850 PF04205 FMN-binding domain H9K48_03855 PF02508 Rnf-Nqr subunit, membrane protein H9K48_03860 PF02508 Rnf-Nqr subunit, membrane protein H9K48_03865 PF00970 Oxidoreductase FAD-binding domain H9K48_03865 PF00111 2Fe-2S iron-sulfur cluster binding domain H9K48_03865 PF00175 Oxidoreductase NAD-binding domain H9K48_03870 PF02424 ApbE family H9K48_03885 PF11798 IMS family HHH motif H9K48_03885 PF11799 impB/mucB/samB family C-terminal domain H9K48_03885 PF00817 impB/mucB/samB family H9K48_03890 PF09382 RQC domain H9K48_03890 PF16124 RecQ zinc-binding H9K48_03890 PF00570 HRDC domain H9K48_03890 PF00271 Helicase conserved C-terminal domain H9K48_03890 PF00270 DEAD/DEAH box helicase H9K48_03895 PF01272 Transcription elongation factor, GreA/GreB, C-term H9K48_03895 PF03449 Transcription elongation factor, N-terminal H9K48_03910 PF00209 Sodium:neurotransmitter symporter family H9K48_03920 PF06786 Uncharacterised protein family (UPF0253) H9K48_03930 PF04073 Aminoacyl-tRNA editing domain H9K48_03930 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) H9K48_03930 PF03129 Anticodon binding domain H9K48_03935 PF01980 tRNA-methyltransferase O H9K48_03935 PF18389 TrmO C-terminal domain H9K48_03940 PF01197 Ribosomal protein L31 H9K48_03945 PF00444 Ribosomal protein L36 H9K48_03950 PF03806 AbgT putative transporter family H9K48_03955 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 H9K48_03980 PF04287 tRNA pseudouridine synthase C H9K48_03985 PF00849 RNA pseudouridylate synthase H9K48_03990 PF11944 Protein of unknown function (DUF3461) H9K48_03995 PF08335 GlnD PII-uridylyltransferase H9K48_03995 PF01909 Nucleotidyltransferase domain H9K48_03995 PF01842 ACT domain H9K48_03995 PF01966 HD domain H9K48_04000 PF00557 Metallopeptidase family M24 H9K48_04005 PF00318 Ribosomal protein S2 H9K48_04010 PF00889 Elongation factor TS H9K48_04015 PF00696 Amino acid kinase family H9K48_04020 PF01765 Ribosome recycling factor H9K48_04025 PF01255 Putative undecaprenyl diphosphate synthase H9K48_04035 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase H9K48_04035 PF13288 DXP reductoisomerase C-terminal domain H9K48_04035 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain H9K48_04040 PF17820 PDZ domain H9K48_04040 PF02163 Peptidase family M50 H9K48_04045 PF01103 Surface antigen H9K48_04045 PF07244 Surface antigen variable number repeat H9K48_04050 PF03938 Outer membrane protein (OmpH-like) H9K48_04055 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD H9K48_04055 PF00132 Bacterial transferase hexapeptide (six repeats) H9K48_04060 PF07977 FabA-like domain H9K48_04065 PF00132 Bacterial transferase hexapeptide (six repeats) H9K48_04065 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 H9K48_04070 PF02684 Lipid-A-disaccharide synthetase H9K48_04075 PF01351 Ribonuclease HII H9K48_04080 PF02811 PHP domain H9K48_04080 PF14579 Helix-hairpin-helix motif H9K48_04080 PF07733 Bacterial DNA polymerase III alpha NTPase domain H9K48_04080 PF17657 Bacterial DNA polymerase III alpha subunit finger domain H9K48_04080 PF01336 OB-fold nucleic acid binding domain H9K48_04085 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit H9K48_04090 PF11734 TilS substrate C-terminal domain H9K48_04090 PF09179 TilS substrate binding domain H9K48_04090 PF01171 PP-loop family H9K48_04095 PF00034 Cytochrome c H9K48_04100 PF00543 Nitrogen regulatory protein P-II H9K48_04105 PF03372 Endonuclease/Exonuclease/phosphatase family H9K48_04115 PF01476 LysM domain H9K48_04115 PF01464 Transglycosylase SLT domain H9K48_04120 PF16123 Hydroxyacylglutathione hydrolase C-terminus H9K48_04120 PF00753 Metallo-beta-lactamase superfamily H9K48_04125 PF08241 Methyltransferase domain H9K48_04130 PF00075 RNase H H9K48_04135 PF00929 Exonuclease H9K48_04145 PF01740 STAS domain H9K48_04145 PF00916 Sulfate permease family H9K48_04150 PF02770 Acyl-CoA dehydrogenase, middle domain H9K48_04150 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H9K48_04150 PF09317 Domain of unknown function (DUF1974) H9K48_04150 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H9K48_04155 PF13580 SIS domain H9K48_04160 PF13230 Glutamine amidotransferases class-II H9K48_04165 PF00551 Formyl transferase H9K48_04170 PF00586 AIR synthase related protein, N-terminal domain H9K48_04170 PF02769 AIR synthase related protein, C-terminal domain H9K48_04180 PF00860 Permease family H9K48_04195 PF03358 NADPH-dependent FMN reductase H9K48_04200 PF03960 ArsC family H9K48_04205 PF01435 Peptidase family M48 H9K48_04205 PF13181 Tetratricopeptide repeat H9K48_04215 PF01594 AI-2E family transporter H9K48_04220 PF00578 AhpC/TSA family H9K48_04225 PF01842 ACT domain H9K48_04230 PF00701 Dihydrodipicolinate synthetase family H9K48_04235 PF06804 NlpB/DapX lipoprotein H9K48_04250 PF07687 Peptidase dimerisation domain H9K48_04250 PF01546 Peptidase family M20/M25/M40 H9K48_04255 PF03960 ArsC family H9K48_04275 PF11143 Protein of unknown function (DUF2919) H9K48_04280 PF04261 Dyp-type peroxidase family H9K48_04285 PF00669 Bacterial flagellin N-terminal helical region H9K48_04285 PF00700 Bacterial flagellin C-terminal helical region H9K48_04285 PF07196 Flagellin hook IN motif H9K48_04290 PF00700 Bacterial flagellin C-terminal helical region H9K48_04290 PF07196 Flagellin hook IN motif H9K48_04290 PF00669 Bacterial flagellin N-terminal helical region H9K48_04295 PF00700 Bacterial flagellin C-terminal helical region H9K48_04295 PF07196 Flagellin hook IN motif H9K48_04295 PF00669 Bacterial flagellin N-terminal helical region H9K48_04300 PF03646 FlaG protein H9K48_04305 PF07196 Flagellin hook IN motif H9K48_04305 PF07195 Flagellar hook-associated protein 2 C-terminus H9K48_04305 PF02465 Flagellar hook-associated protein 2 N-terminus H9K48_04315 PF02561 Flagellar protein FliS H9K48_04320 PF02954 Bacterial regulatory protein, Fis family H9K48_04320 PF06490 Flagellar regulatory protein FleQ H9K48_04320 PF00158 Sigma-54 interaction domain H9K48_04325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_04325 PF00512 His Kinase A (phospho-acceptor) domain H9K48_04325 PF13188 PAS domain H9K48_04330 PF02954 Bacterial regulatory protein, Fis family H9K48_04330 PF00072 Response regulator receiver domain H9K48_04330 PF00158 Sigma-54 interaction domain H9K48_04335 PF02049 Flagellar hook-basal body complex protein FliE H9K48_04340 PF01514 Secretory protein of YscJ/FliF family H9K48_04340 PF08345 Flagellar M-ring protein C-terminal H9K48_04345 PF14841 FliG middle domain H9K48_04345 PF01706 FliG C-terminal domain H9K48_04345 PF14842 FliG N-terminal domain H9K48_04355 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain H9K48_04355 PF18269 T3SS EscN ATPase C-terminal domain H9K48_04375 PF02154 Flagellar motor switch protein FliM H9K48_04375 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term H9K48_04380 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term H9K48_04385 PF04347 Flagellar biosynthesis protein, FliO H9K48_04390 PF00813 FliP family H9K48_04395 PF01313 Bacterial export proteins, family 3 H9K48_04400 PF01311 Bacterial export proteins, family 1 H9K48_04405 PF01312 FlhB HrpN YscU SpaS Family H9K48_04410 PF00771 FHIPEP family H9K48_04415 PF00448 SRP54-type protein, GTPase domain H9K48_04420 PF10609 NUBPL iron-transfer P-loop NTPase H9K48_04425 PF04542 Sigma-70 region 2 H9K48_04425 PF04539 Sigma-70 region 3 H9K48_04425 PF04545 Sigma-70, region 4 H9K48_04430 PF00072 Response regulator receiver domain H9K48_04435 PF04344 Chemotaxis phosphatase, CheZ H9K48_04440 PF00072 Response regulator receiver domain H9K48_04440 PF01627 Hpt domain H9K48_04440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_04440 PF02895 Signal transducing histidine kinase, homodimeric domain H9K48_04440 PF01584 CheW-like domain H9K48_04445 PF01339 CheB methylesterase H9K48_04445 PF00072 Response regulator receiver domain H9K48_04450 PF13614 AAA domain H9K48_04460 PF01584 CheW-like domain H9K48_04470 PF00005 ABC transporter H9K48_04475 PF03379 CcmB protein H9K48_04480 PF01578 Cytochrome C assembly protein H9K48_04485 PF04995 Heme exporter protein D (CcmD) H9K48_04490 PF03100 CcmE H9K48_04495 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal H9K48_04495 PF01578 Cytochrome C assembly protein H9K48_04500 PF08534 Redoxin H9K48_04505 PF03918 Cytochrome C biogenesis protein H9K48_04515 PF04333 MlaA lipoprotein H9K48_04520 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) H9K48_04525 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) H9K48_04535 PF08281 Sigma-70, region 4 H9K48_04535 PF04542 Sigma-70 region 2 H9K48_04540 PF02803 Thiolase, C-terminal domain H9K48_04540 PF00108 Thiolase, N-terminal domain H9K48_04545 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain H9K48_04545 PF00378 Enoyl-CoA hydratase/isomerase H9K48_04545 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain H9K48_04555 PF00675 Insulinase (Peptidase family M16) H9K48_04555 PF05193 Peptidase M16 inactive domain H9K48_04555 PF16187 Middle or third domain of peptidase_M16 H9K48_04560 PF00300 Histidine phosphatase superfamily (branch 1) H9K48_04565 PF01713 Smr domain H9K48_04570 PF05175 Methyltransferase small domain H9K48_04575 PF01264 Chorismate synthase H9K48_04580 PF03458 UPF0126 domain H9K48_04585 PF04315 Elongation factor P hydroxylase H9K48_04590 PF08891 YfcL protein H9K48_04595 PF03358 NADPH-dependent FMN reductase H9K48_04600 PF01266 FAD dependent oxidoreductase H9K48_04600 PF05430 S-adenosyl-L-methionine-dependent methyltransferase H9K48_04605 PF00109 Beta-ketoacyl synthase, N-terminal domain H9K48_04605 PF02801 Beta-ketoacyl synthase, C-terminal domain H9K48_04610 PF11890 Domain of unknown function (DUF3410) H9K48_04610 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain H9K48_04610 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain H9K48_04615 PF02774 Semialdehyde dehydrogenase, dimerisation domain H9K48_04615 PF01118 Semialdehyde dehydrogenase, NAD binding domain H9K48_04625 PF01416 tRNA pseudouridine synthase H9K48_04630 PF01039 Carboxyl transferase domain H9K48_04630 PF17848 Acetyl-coA carboxylase zinc finger domain H9K48_04635 PF02875 Mur ligase family, glutamate ligase domain H9K48_04635 PF08245 Mur ligase middle domain H9K48_04640 PF05036 Sporulation related domain H9K48_04645 PF02674 Colicin V production protein H9K48_04650 PF00156 Phosphoribosyl transferase domain H9K48_04655 PF03466 LysR substrate binding domain H9K48_04655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_04660 PF00072 Response regulator receiver domain H9K48_04665 PF04304 Protein of unknown function (DUF454) H9K48_04670 PF00156 Phosphoribosyl transferase domain H9K48_04675 PF12169 DNA polymerase III subunits gamma and tau domain III H9K48_04675 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding H9K48_04675 PF12170 DNA polymerase III tau subunit V interacting with alpha H9K48_04680 PF02575 YbaB/EbfC DNA-binding family H9K48_04685 PF13662 Toprim domain H9K48_04685 PF02132 RecR protein H9K48_04690 PF00230 Major intrinsic protein H9K48_04700 PF01042 Endoribonuclease L-PSP H9K48_04705 PF03313 Serine dehydratase alpha chain H9K48_04715 PF03692 Putative zinc- or iron-chelating domain H9K48_04720 PF04226 Transglycosylase associated protein H9K48_04725 PF03692 Putative zinc- or iron-chelating domain H9K48_04730 PF05552 Conserved TM helix H9K48_04730 PF00924 Mechanosensitive ion channel H9K48_04735 PF03992 Antibiotic biosynthesis monooxygenase H9K48_04740 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H9K48_04750 PF00245 Alkaline phosphatase H9K48_04765 PF13847 Methyltransferase domain H9K48_04770 PF00672 HAMP domain H9K48_04770 PF02743 Cache domain H9K48_04770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9K48_04775 PF01263 Aldose 1-epimerase H9K48_04780 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain H9K48_04780 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain H9K48_04785 PF01641 SelR domain H9K48_04795 PF07023 Protein of unknown function (DUF1315) H9K48_04800 PF17763 Glutaminase/Asparaginase C-terminal domain H9K48_04800 PF00710 Asparaginase, N-terminal H9K48_04805 PF01343 Peptidase family S49 H9K48_04810 PF00724 NADH:flavin oxidoreductase / NADH oxidase family H9K48_04810 PF07992 Pyridine nucleotide-disulphide oxidoreductase H9K48_04815 PF00881 Nitroreductase family H9K48_04820 PF01751 Toprim domain H9K48_04820 PF01131 DNA topoisomerase H9K48_04830 PF00106 short chain dehydrogenase H9K48_04835 PF00850 Histone deacetylase domain H9K48_04845 PF11893 Domain of unknown function (DUF3413) H9K48_04845 PF00884 Sulfatase H9K48_04850 PF07208 Protein of unknown function (DUF1414) H9K48_04855 PF04245 37-kD nucleoid-associated bacterial protein H9K48_04870 PF03553 Na+/H+ antiporter family H9K48_04875 PF02774 Semialdehyde dehydrogenase, dimerisation domain H9K48_04875 PF01118 Semialdehyde dehydrogenase, NAD binding domain H9K48_04880 PF00520 Ion transport protein H9K48_04880 PF00027 Cyclic nucleotide-binding domain H9K48_04885 PF01914 MarC family integral membrane protein H9K48_04890 PF00171 Aldehyde dehydrogenase family H9K48_04890 PF00465 Iron-containing alcohol dehydrogenase H9K48_04905 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain H9K48_04905 PF02777 Iron/manganese superoxide dismutases, C-terminal domain H9K48_04910 PF00462 Glutaredoxin H9K48_04920 PF03553 Na+/H+ antiporter family H9K48_04920 PF13726 Na+-H+ antiporter family H9K48_04925 PF00929 Exonuclease H9K48_04930 PF00691 OmpA family H9K48_04930 PF18393 MotY N-terminal domain H9K48_04935 PF10952 Protein of unknown function (DUF2753) H9K48_04940 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H9K48_04945 PF10576 Iron-sulfur binding domain of endonuclease III H9K48_04945 PF00633 Helix-hairpin-helix motif H9K48_04945 PF00730 HhH-GPD superfamily base excision DNA repair protein H9K48_04950 PF02508 Rnf-Nqr subunit, membrane protein H9K48_04955 PF04205 FMN-binding domain H9K48_04960 PF03116 NQR2, RnfD, RnfE family H9K48_04965 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit H9K48_04965 PF13375 RnfC Barrel sandwich hybrid domain H9K48_04965 PF10531 SLBB domain H9K48_04965 PF12838 4Fe-4S dicluster domain H9K48_04970 PF04060 Putative Fe-S cluster H9K48_04975 PF02508 Rnf-Nqr subunit, membrane protein H9K48_04985 PF00271 Helicase conserved C-terminal domain H9K48_04985 PF04851 Type III restriction enzyme, res subunit H9K48_04985 PF02151 UvrB/uvrC motif H9K48_04985 PF12344 Ultra-violet resistance protein B H9K48_04985 PF17757 UvrB interaction domain H9K48_04990 PF00072 Response regulator receiver domain H9K48_04990 PF02954 Bacterial regulatory protein, Fis family H9K48_04990 PF00158 Sigma-54 interaction domain H9K48_04995 PF01627 Hpt domain H9K48_05000 PF01933 Uncharacterised protein family UPF0052 H9K48_05005 PF04055 Radical SAM superfamily H9K48_05005 PF06463 Molybdenum Cofactor Synthesis C H9K48_05010 PF00994 Probable molybdopterin binding domain H9K48_05015 PF01967 MoaC family H9K48_05020 PF02597 ThiS family H9K48_05025 PF02391 MoaE protein H9K48_05030 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle H9K48_05035 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_05040 PF12911 N-terminal TM domain of oligopeptide transport permease C H9K48_05040 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_05045 PF00005 ABC transporter H9K48_05045 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H9K48_05050 PF00005 ABC transporter H9K48_05050 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H9K48_05055 PF13409 Glutathione S-transferase, N-terminal domain H9K48_05065 PF13194 Domain of unknown function (DUF4010) H9K48_05070 PF07085 DRTGG domain H9K48_05070 PF01515 Phosphate acetyl/butaryl transferase H9K48_05075 PF00871 Acetokinase family H9K48_05080 PF04217 Protein of unknown function, DUF412 H9K48_05090 PF02653 Branched-chain amino acid transport system / permease component H9K48_05095 PF00005 ABC transporter H9K48_05100 PF02903 Alpha amylase, N-terminal ig-like domain H9K48_05100 PF00128 Alpha amylase, catalytic domain H9K48_05105 PF00990 Diguanylate cyclase, GGDEF domain H9K48_05105 PF00072 Response regulator receiver domain H9K48_05110 PF01207 Dihydrouridine synthase (Dus) H9K48_05115 PF03695 Uncharacterised protein family (UPF0149) H9K48_05115 PF02810 SEC-C motif H9K48_05120 PF02600 Disulfide bond formation protein DsbB H9K48_05125 PF06450 Bacterial Na+/H+ antiporter B (NhaB) H9K48_05130 PF07840 FadR C-terminal domain H9K48_05130 PF00392 Bacterial regulatory proteins, gntR family H9K48_05140 PF01588 Putative tRNA binding domain H9K48_05140 PF09334 tRNA synthetases class I (M) H9K48_05145 PF10609 NUBPL iron-transfer P-loop NTPase H9K48_05150 PF00485 Phosphoribulokinase / Uridine kinase family H9K48_05160 PF12557 Cob(I)alamin adenosyltransferase N terminal H9K48_05160 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP H9K48_05165 PF01451 Low molecular weight phosphotyrosine protein phosphatase H9K48_05170 PF01740 STAS domain H9K48_05170 PF00916 Sulfate permease family H9K48_05175 PF12111 Polyribonucleotide phosphorylase C terminal H9K48_05175 PF10150 Ribonuclease E/G family H9K48_05175 PF00575 S1 RNA binding domain H9K48_05180 PF00849 RNA pseudouridylate synthase H9K48_05180 PF01479 S4 domain H9K48_05185 PF02545 Maf-like protein H9K48_05190 PF02620 Large ribosomal RNA subunit accumulation protein YceD H9K48_05195 PF01783 Ribosomal L32p protein family H9K48_05200 PF02504 Fatty acid synthesis protein H9K48_05205 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal H9K48_05205 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III H9K48_05210 PF00698 Acyl transferase domain H9K48_05220 PF00550 Phosphopantetheine attachment site H9K48_05225 PF00109 Beta-ketoacyl synthase, N-terminal domain H9K48_05225 PF02801 Beta-ketoacyl synthase, C-terminal domain H9K48_05230 PF01063 Amino-transferase class IV H9K48_05235 PF02618 YceG-like family H9K48_05240 PF02223 Thymidylate kinase H9K48_05245 PF09115 DNA polymerase III, delta subunit, C terminal H9K48_05250 PF01026 TatD related DNase H9K48_05255 PF00367 phosphotransferase system, EIIB H9K48_05255 PF02378 Phosphotransferase system, EIIC H9K48_05270 PF00209 Sodium:neurotransmitter symporter family H9K48_05285 PF01734 Patatin-like phospholipase H9K48_05290 PF00224 Pyruvate kinase, barrel domain H9K48_05290 PF02887 Pyruvate kinase, alpha/beta domain H9K48_05295 PF00480 ROK family H9K48_05300 PF01584 CheW-like domain H9K48_05300 PF00072 Response regulator receiver domain H9K48_05305 PF01336 OB-fold nucleic acid binding domain H9K48_05305 PF02811 PHP domain H9K48_05305 PF14579 Helix-hairpin-helix motif H9K48_05305 PF17657 Bacterial DNA polymerase III alpha subunit finger domain H9K48_05305 PF07733 Bacterial DNA polymerase III alpha NTPase domain H9K48_05320 PF00106 short chain dehydrogenase H9K48_05325 PF08496 Peptidase family S49 N-terminal H9K48_05325 PF01343 Peptidase family S49 H9K48_05330 PF02224 Cytidylate kinase H9K48_05335 PF00575 S1 RNA binding domain H9K48_05340 PF00216 Bacterial DNA-binding protein H9K48_05345 PF06305 Lipopolysaccharide assembly protein A domain H9K48_05350 PF18073 Rubredoxin metal binding domain H9K48_05355 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family H9K48_05360 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle H9K48_05370 PF01370 NAD dependent epimerase/dehydratase family H9K48_05375 PF00535 Glycosyl transferase family 2 H9K48_05385 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase H9K48_05395 PF02470 MlaD protein H9K48_05400 PF04403 Paraquat-inducible protein A H9K48_05405 PF13442 Cytochrome C oxidase, cbb3-type, subunit III H9K48_05410 PF00034 Cytochrome c H9K48_05415 PF00384 Molybdopterin oxidoreductase H9K48_05415 PF04879 Molybdopterin oxidoreductase Fe4S4 domain H9K48_05415 PF01568 Molydopterin dinucleotide binding domain H9K48_05420 PF03916 Polysulphide reductase, NrfD H9K48_05425 PF13247 4Fe-4S dicluster domain H9K48_05430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_05430 PF00512 His Kinase A (phospho-acceptor) domain H9K48_05435 PF00196 Bacterial regulatory proteins, luxR family H9K48_05435 PF00072 Response regulator receiver domain H9K48_05440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_05440 PF03466 LysR substrate binding domain H9K48_05450 PF11412 Disulphide bond corrector protein DsbC H9K48_05450 PF02683 Cytochrome C biogenesis protein transmembrane region H9K48_05455 PF00085 Thioredoxin H9K48_05470 PF01938 TRAM domain H9K48_05470 PF05958 tRNA (Uracil-5-)-methyltransferase H9K48_05485 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H9K48_05495 PF02687 FtsX-like permease family H9K48_05495 PF12704 MacB-like periplasmic core domain H9K48_05495 PF00005 ABC transporter H9K48_05500 PF00005 ABC transporter H9K48_05500 PF12704 MacB-like periplasmic core domain H9K48_05500 PF02687 FtsX-like permease family H9K48_05505 PF00005 ABC transporter H9K48_05505 PF02687 FtsX-like permease family H9K48_05505 PF12704 MacB-like periplasmic core domain H9K48_05510 PF00857 Isochorismatase family H9K48_05515 PF02311 AraC-like ligand binding domain H9K48_05515 PF12833 Helix-turn-helix domain H9K48_05525 PF08267 Cobalamin-independent synthase, N-terminal domain H9K48_05525 PF01717 Cobalamin-independent synthase, Catalytic domain H9K48_05535 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H9K48_05535 PF00529 HlyD membrane-fusion protein of T1SS H9K48_05540 PF03466 LysR substrate binding domain H9K48_05540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_05560 PF00512 His Kinase A (phospho-acceptor) domain H9K48_05560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_05560 PF00672 HAMP domain H9K48_05565 PF00486 Transcriptional regulatory protein, C terminal H9K48_05565 PF00072 Response regulator receiver domain H9K48_05570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9K48_05570 PF00672 HAMP domain H9K48_05575 PF04055 Radical SAM superfamily H9K48_05575 PF08497 Radical SAM N-terminal H9K48_05575 PF11842 Domain of unknown function (DUF3362) H9K48_05580 PF00563 EAL domain H9K48_05580 PF01590 GAF domain H9K48_05580 PF00990 Diguanylate cyclase, GGDEF domain H9K48_05580 PF00360 Phytochrome region H9K48_05595 PF03466 LysR substrate binding domain H9K48_05595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_05600 PF01717 Cobalamin-independent synthase, Catalytic domain H9K48_05600 PF08267 Cobalamin-independent synthase, N-terminal domain H9K48_05610 PF03795 YCII-related domain H9K48_05615 PF03061 Thioesterase superfamily H9K48_05620 PF04279 Intracellular septation protein A H9K48_05630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_05630 PF00072 Response regulator receiver domain H9K48_05635 PF17327 Acyl homoserine lactone synthase H9K48_05640 PF00375 Sodium:dicarboxylate symporter family H9K48_05645 PF00501 AMP-binding enzyme H9K48_05645 PF13193 AMP-binding enzyme C-terminal domain H9K48_05650 PF00027 Cyclic nucleotide-binding domain H9K48_05650 PF13545 Crp-like helix-turn-helix domain H9K48_05655 PF00290 Tryptophan synthase alpha chain H9K48_05660 PF00291 Pyridoxal-phosphate dependent enzyme H9K48_05665 PF00218 Indole-3-glycerol phosphate synthase H9K48_05665 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase H9K48_05670 PF02885 Glycosyl transferase family, helical bundle domain H9K48_05670 PF00591 Glycosyl transferase family, a/b domain H9K48_05675 PF00117 Glutamine amidotransferase class-I H9K48_05680 PF04715 Anthranilate synthase component I, N terminal region H9K48_05680 PF00425 chorismate binding enzyme H9K48_05685 PF08056 Tryptophan operon leader peptide H9K48_05690 PF02811 PHP domain H9K48_05695 PF01300 Telomere recombination H9K48_05705 PF01479 S4 domain H9K48_05705 PF00849 RNA pseudouridylate synthase H9K48_05710 PF04269 Protein of unknown function, DUF440 H9K48_05715 PF09285 Elongation factor P, C-terminal H9K48_05715 PF08207 Elongation factor P (EF-P) KOW-like domain H9K48_05715 PF01132 Elongation factor P (EF-P) OB domain H9K48_05725 PF03104 DNA polymerase family B, exonuclease domain H9K48_05725 PF00136 DNA polymerase family B H9K48_05730 PF00072 Response regulator receiver domain H9K48_05730 PF00196 Bacterial regulatory proteins, luxR family H9K48_05735 PF01541 GIY-YIG catalytic domain H9K48_05735 PF02151 UvrB/uvrC motif H9K48_05735 PF08459 UvrC Helix-hairpin-helix N-terminal H9K48_05740 PF01066 CDP-alcohol phosphatidyltransferase H9K48_05765 PF00202 Aminotransferase class-III H9K48_05770 PF16653 Saccharopine dehydrogenase C-terminal domain H9K48_05770 PF03435 Saccharopine dehydrogenase NADP binding domain H9K48_05775 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain H9K48_05790 PF00994 Probable molybdopterin binding domain H9K48_05800 PF00268 Ribonucleotide reductase, small chain H9K48_05805 PF02867 Ribonucleotide reductase, barrel domain H9K48_05805 PF03477 ATP cone domain H9K48_05805 PF00317 Ribonucleotide reductase, all-alpha domain H9K48_05815 PF00521 DNA gyrase/topoisomerase IV, subunit A H9K48_05815 PF03989 DNA gyrase C-terminal domain, beta-propeller H9K48_05830 PF02335 Cytochrome c552 H9K48_05840 PF13247 4Fe-4S dicluster domain H9K48_05845 PF03916 Polysulphide reductase, NrfD H9K48_05850 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal H9K48_05850 PF01578 Cytochrome C assembly protein H9K48_05855 PF08534 Redoxin H9K48_05860 PF03918 Cytochrome C biogenesis protein H9K48_05870 PF00925 GTP cyclohydrolase II H9K48_05895 PF01471 Putative peptidoglycan binding domain H9K48_05895 PF03734 L,D-transpeptidase catalytic domain H9K48_05900 PF05951 Bacterial protein of unknown function (DUF882) H9K48_05905 PF00753 Metallo-beta-lactamase superfamily H9K48_05920 PF03480 Bacterial extracellular solute-binding protein, family 7 H9K48_05930 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component H9K48_05935 PF07730 Histidine kinase H9K48_05935 PF17200 Single Cache domain 2 H9K48_05940 PF00196 Bacterial regulatory proteins, luxR family H9K48_05940 PF00072 Response regulator receiver domain H9K48_05945 PF01047 MarR family H9K48_05950 PF02028 BCCT, betaine/carnitine/choline family transporter H9K48_05955 PF00672 HAMP domain H9K48_05955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9K48_05975 PF00155 Aminotransferase class I and II H9K48_05990 PF00392 Bacterial regulatory proteins, gntR family H9K48_05990 PF00155 Aminotransferase class I and II H9K48_06000 PF01336 OB-fold nucleic acid binding domain H9K48_06000 PF00152 tRNA synthetases class II (D, K and N) H9K48_06005 PF02743 Cache domain H9K48_06005 PF00672 HAMP domain H9K48_06005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9K48_06010 PF01242 6-pyruvoyl tetrahydropterin synthase H9K48_06020 PF00563 EAL domain H9K48_06020 PF04940 Sensors of blue-light using FAD H9K48_06025 PF03315 Serine dehydratase beta chain H9K48_06025 PF03313 Serine dehydratase alpha chain H9K48_06030 PF03222 Tryptophan/tyrosine permease family H9K48_06035 PF00293 NUDIX domain H9K48_06045 PF00072 Response regulator receiver domain H9K48_06045 PF09308 LuxQ, periplasmic H9K48_06045 PF00512 His Kinase A (phospho-acceptor) domain H9K48_06045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_06050 PF00425 chorismate binding enzyme H9K48_06050 PF04715 Anthranilate synthase component I, N terminal region H9K48_06065 PF04317 YcjX-like family, DUF463 H9K48_06070 PF05128 Domain of unknown function (DUF697) H9K48_06075 PF18024 Helix-turn-helix domain H9K48_06075 PF00158 Sigma-54 interaction domain H9K48_06080 PF13302 Acetyltransferase (GNAT) domain H9K48_06095 PF13495 Phage integrase, N-terminal SAM-like domain H9K48_06095 PF00589 Phage integrase family H9K48_06105 PF05154 TM2 domain H9K48_06205 PF13614 AAA domain H9K48_06460 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H9K48_06645 PF01810 LysE type translocator H9K48_06715 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H9K48_06915 PF13333 Integrase core domain H9K48_06915 PF00665 Integrase core domain H9K48_06915 PF13276 HTH-like domain H9K48_06960 PF03553 Na+/H+ antiporter family H9K48_06965 PF00120 Glutamine synthetase, catalytic domain H9K48_06970 PF07722 Peptidase C26 H9K48_06975 PF07883 Cupin domain H9K48_06975 PF01381 Helix-turn-helix H9K48_06980 PF00171 Aldehyde dehydrogenase family H9K48_06985 PF01266 FAD dependent oxidoreductase H9K48_06990 PF00795 Carbon-nitrogen hydrolase H9K48_06995 PF04371 Porphyromonas-type peptidyl-arginine deiminase H9K48_07000 PF00171 Aldehyde dehydrogenase family H9K48_07005 PF00202 Aminotransferase class-III H9K48_07010 PF02833 DHHA2 domain H9K48_07010 PF01368 DHH family H9K48_07015 PF00563 EAL domain H9K48_07015 PF00196 Bacterial regulatory proteins, luxR family H9K48_07025 PF02272 DHHA1 domain H9K48_07025 PF01411 tRNA synthetases class II (A) H9K48_07025 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain H9K48_07030 PF12833 Helix-turn-helix domain H9K48_07040 PF01047 MarR family H9K48_07045 PF04237 YjbR H9K48_07055 PF01928 CYTH domain H9K48_07065 PF00132 Bacterial transferase hexapeptide (six repeats) H9K48_07065 PF12464 Maltose acetyltransferase H9K48_07080 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) H9K48_07080 PF00512 His Kinase A (phospho-acceptor) domain H9K48_07080 PF01627 Hpt domain H9K48_07080 PF00072 Response regulator receiver domain H9K48_07080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_07080 PF00672 HAMP domain H9K48_07085 PF00563 EAL domain H9K48_07085 PF00990 Diguanylate cyclase, GGDEF domain H9K48_07085 PF03707 Bacterial signalling protein N terminal repeat H9K48_07100 PF04204 Homoserine O-succinyltransferase H9K48_07110 PF13520 Amino acid permease H9K48_07115 PF03279 Bacterial lipid A biosynthesis acyltransferase H9K48_07120 PF02074 Carboxypeptidase Taq (M32) metallopeptidase H9K48_07125 PF01810 LysE type translocator H9K48_07135 PF01235 Sodium:alanine symporter family H9K48_07160 PF00884 Sulfatase H9K48_07165 PF08521 Two-component sensor kinase N-terminal H9K48_07165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_07165 PF00512 His Kinase A (phospho-acceptor) domain H9K48_07170 PF00072 Response regulator receiver domain H9K48_07170 PF00486 Transcriptional regulatory protein, C terminal H9K48_07190 PF00501 AMP-binding enzyme H9K48_07200 PF04069 Substrate binding domain of ABC-type glycine betaine transport system H9K48_07205 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_07210 PF00005 ABC transporter H9K48_07210 PF00571 CBS domain H9K48_07225 PF02028 BCCT, betaine/carnitine/choline family transporter H9K48_07230 PF00583 Acetyltransferase (GNAT) family H9K48_07235 PF00202 Aminotransferase class-III H9K48_07240 PF06339 Ectoine synthase H9K48_07245 PF00696 Amino acid kinase family H9K48_07245 PF13840 ACT domain H9K48_07250 PF03150 Di-haem cytochrome c peroxidase H9K48_07250 PF00034 Cytochrome c H9K48_07265 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H9K48_07280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_07280 PF00989 PAS fold H9K48_07280 PF17203 Single cache domain 3 H9K48_07280 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain H9K48_07285 PF12431 Transcriptional regulator H9K48_07285 PF00072 Response regulator receiver domain H9K48_07290 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain H9K48_07290 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain H9K48_07295 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase H9K48_07300 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain H9K48_07300 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase H9K48_07330 PF01590 GAF domain H9K48_07330 PF02954 Bacterial regulatory protein, Fis family H9K48_07330 PF00158 Sigma-54 interaction domain H9K48_07335 PF00171 Aldehyde dehydrogenase family H9K48_07355 PF12833 Helix-turn-helix domain H9K48_07370 PF00263 Bacterial type II and III secretion system protein H9K48_07370 PF03958 Bacterial type II/III secretion system short domain H9K48_07375 PF16697 Inner membrane component of T3SS, cytoplasmic domain H9K48_07375 PF16693 Inner membrane component of T3SS, periplasmic domain H9K48_07385 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF H9K48_07390 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) H9K48_07400 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI H9K48_07405 PF01514 Secretory protein of YscJ/FliF family H9K48_07415 PF02108 Flagellar assembly protein FliH H9K48_07425 PF02661 Fic/DOC family H9K48_07455 PF12146 Serine aminopeptidase, S33 H9K48_07460 PF12146 Serine aminopeptidase, S33 H9K48_07465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_07465 PF03466 LysR substrate binding domain H9K48_07470 PF01312 FlhB HrpN YscU SpaS Family H9K48_07475 PF01311 Bacterial export proteins, family 1 H9K48_07480 PF01313 Bacterial export proteins, family 3 H9K48_07485 PF00813 FliP family H9K48_07490 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term H9K48_07505 PF02874 ATP synthase alpha/beta family, beta-barrel domain H9K48_07505 PF18269 T3SS EscN ATPase C-terminal domain H9K48_07505 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain H9K48_07510 PF07201 HrpJ-like domain H9K48_07515 PF09059 TyeA H9K48_07535 PF00771 FHIPEP family H9K48_07540 PF09621 Type III secretion system regulator (LcrR) H9K48_07545 PF07216 LcrG protein H9K48_07550 PF04792 V antigen (LcrV) protein H9K48_07555 PF07720 Tetratricopeptide repeat H9K48_07565 PF05844 YopD protein H9K48_07575 PF01925 Sulfite exporter TauE/SafE H9K48_07580 PF01970 Tripartite tricarboxylate transporter TctA family H9K48_07610 PF00285 Citrate synthase, C-terminal domain H9K48_07615 PF00330 Aconitase family (aconitate hydratase) H9K48_07615 PF00694 Aconitase C-terminal domain H9K48_07620 PF04303 PrpF protein H9K48_07625 PF16177 Acetyl-coenzyme A synthetase N-terminus H9K48_07625 PF00501 AMP-binding enzyme H9K48_07625 PF13193 AMP-binding enzyme C-terminal domain H9K48_07635 PF00089 Trypsin H9K48_07650 PF04055 Radical SAM superfamily H9K48_07655 PF06508 Queuosine biosynthesis protein QueC H9K48_07660 PF17158 Membrane-associated sensor, integral membrane domain H9K48_07660 PF00990 Diguanylate cyclase, GGDEF domain H9K48_07670 PF00691 OmpA family H9K48_07670 PF05736 OprF membrane domain H9K48_07685 PF05736 OprF membrane domain H9K48_07685 PF00691 OmpA family H9K48_07700 PF10672 S-adenosylmethionine-dependent methyltransferase H9K48_07700 PF17785 PUA-like domain H9K48_07705 PF02743 Cache domain H9K48_07705 PF00672 HAMP domain H9K48_07705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9K48_07710 PF00708 Acylphosphatase H9K48_07715 PF04358 DsrC like protein H9K48_07725 PF01027 Inhibitor of apoptosis-promoting Bax1 H9K48_07730 PF00005 ABC transporter H9K48_07735 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_07740 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_07745 PF00497 Bacterial extracellular solute-binding proteins, family 3 H9K48_07750 PF14824 Sirohaem biosynthesis protein central H9K48_07750 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases H9K48_07750 PF10414 Sirohaem synthase dimerisation region H9K48_07755 PF04461 Protein of unknown function (DUF520) H9K48_07760 PF00793 DAHP synthetase I family H9K48_07780 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF H9K48_07780 PF01189 16S rRNA methyltransferase RsmB/F H9K48_07780 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF H9K48_07785 PF02470 MlaD protein H9K48_07790 PF04403 Paraquat-inducible protein A H9K48_07795 PF00664 ABC transporter transmembrane region H9K48_07795 PF00005 ABC transporter H9K48_07800 PF13185 GAF domain H9K48_07805 PF17516 ProQ C-terminal domain H9K48_07805 PF04352 ProQ/FINO family H9K48_07810 PF00595 PDZ domain H9K48_07810 PF11818 C-terminal domain of tail specific protease (DUF3340) H9K48_07810 PF03572 Peptidase family S41 H9K48_07810 PF17804 Tail specific protease N-terminal domain H9K48_07820 PF11940 Domain of unknown function (DUF3458) Ig-like fold H9K48_07820 PF01433 Peptidase family M1 domain H9K48_07820 PF17432 Domain of unknown function (DUF3458_C) ARM repeats H9K48_07830 PF05088 Bacterial NAD-glutamate dehydrogenase H9K48_07835 PF01180 Dihydroorotate dehydrogenase H9K48_07840 PF07126 Cell-division protein ZapC H9K48_07845 PF01170 Putative RNA methylase family UPF0020 H9K48_07845 PF02926 THUMP domain H9K48_07845 PF10672 S-adenosylmethionine-dependent methyltransferase H9K48_07855 PF16326 ABC transporter C-terminal domain H9K48_07855 PF00005 ABC transporter H9K48_07855 PF12848 ABC transporter H9K48_07865 PF04957 Ribosome modulation factor H9K48_07870 PF07977 FabA-like domain H9K48_07875 PF13654 AAA domain H9K48_07875 PF05362 Lon protease (S16) C-terminal proteolytic domain H9K48_07880 PF06303 MatP N-terminal domain H9K48_07880 PF17414 MatP C-terminal ribbon-helix-helix domain H9K48_07895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_07895 PF00512 His Kinase A (phospho-acceptor) domain H9K48_07895 PF00072 Response regulator receiver domain H9K48_07895 PF09308 LuxQ, periplasmic H9K48_07910 PF00115 Cytochrome C and Quinol oxidase polypeptide I H9K48_07925 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP H9K48_07925 PF13442 Cytochrome C oxidase, cbb3-type, subunit III H9K48_07935 PF00403 Heavy-metal-associated domain H9K48_07950 PF13545 Crp-like helix-turn-helix domain H9K48_07950 PF00027 Cyclic nucleotide-binding domain H9K48_07955 PF00582 Universal stress protein family H9K48_07960 PF01171 PP-loop family H9K48_07980 PF08402 TOBE domain H9K48_07980 PF00005 ABC transporter H9K48_07985 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_07990 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_07995 PF13416 Bacterial extracellular solute-binding protein H9K48_08000 PF13416 Bacterial extracellular solute-binding protein H9K48_08005 PF02146 Sir2 family H9K48_08015 PF00909 Ammonium Transporter Family H9K48_08025 PF03527 RHS protein H9K48_08025 PF05593 RHS Repeat H9K48_08040 PF13247 4Fe-4S dicluster domain H9K48_08045 PF04879 Molybdopterin oxidoreductase Fe4S4 domain H9K48_08045 PF00384 Molybdopterin oxidoreductase H9K48_08045 PF01568 Molydopterin dinucleotide binding domain H9K48_08055 PF02613 Nitrate reductase delta subunit H9K48_08075 PF02634 FdhD/NarQ family H9K48_08080 PF00005 ABC transporter H9K48_08080 PF12848 ABC transporter H9K48_08085 PF00512 His Kinase A (phospho-acceptor) domain H9K48_08085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_08090 PF00072 Response regulator receiver domain H9K48_08090 PF02954 Bacterial regulatory protein, Fis family H9K48_08090 PF00158 Sigma-54 interaction domain H9K48_08095 PF12849 PBP superfamily domain H9K48_08100 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_08105 PF00005 ABC transporter H9K48_08105 PF08402 TOBE domain H9K48_08110 PF12804 MobA-like NTP transferase domain H9K48_08115 PF00994 Probable molybdopterin binding domain H9K48_08115 PF03453 MoeA N-terminal region (domain I and II) H9K48_08115 PF03454 MoeA C-terminal region (domain IV) H9K48_08125 PF00480 ROK family H9K48_08130 PF03942 DTW domain H9K48_08165 PF17202 Single cache domain 3 H9K48_08165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9K48_08165 PF00672 HAMP domain H9K48_08170 PF00877 NlpC/P60 family H9K48_08180 PF05230 MASE2 domain H9K48_08180 PF00990 Diguanylate cyclase, GGDEF domain H9K48_08185 PF00072 Response regulator receiver domain H9K48_08185 PF01339 CheB methylesterase H9K48_08190 PF03881 Fructosamine kinase H9K48_08200 PF00677 Lumazine binding domain H9K48_08205 PF01554 MatE H9K48_08215 PF01068 ATP dependent DNA ligase domain H9K48_08215 PF14743 DNA ligase OB-like domain H9K48_08220 PF01740 STAS domain H9K48_08230 PF10531 SLBB domain H9K48_08230 PF02563 Polysaccharide biosynthesis/export protein H9K48_08245 PF00158 Sigma-54 interaction domain H9K48_08245 PF02954 Bacterial regulatory protein, Fis family H9K48_08245 PF00072 Response regulator receiver domain H9K48_08250 PF13439 Glycosyltransferase Family 4 H9K48_08250 PF00534 Glycosyl transferases group 1 H9K48_08255 PF00534 Glycosyl transferases group 1 H9K48_08255 PF13439 Glycosyltransferase Family 4 H9K48_08285 PF13439 Glycosyltransferase Family 4 H9K48_08285 PF00534 Glycosyl transferases group 1 H9K48_08290 PF00535 Glycosyl transferase family 2 H9K48_08295 PF02397 Bacterial sugar transferase H9K48_08305 PF02028 BCCT, betaine/carnitine/choline family transporter H9K48_08320 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold H9K48_08320 PF00270 DEAD/DEAH box helicase H9K48_08320 PF11898 Domain of unknown function (DUF3418) H9K48_08320 PF04408 Helicase associated domain (HA2) H9K48_08320 PF00271 Helicase conserved C-terminal domain H9K48_08325 PF02525 Flavodoxin-like fold H9K48_08335 PF02613 Nitrate reductase delta subunit H9K48_08340 PF04976 DMSO reductase anchor subunit (DmsC) H9K48_08345 PF13247 4Fe-4S dicluster domain H9K48_08345 PF12800 4Fe-4S binding domain H9K48_08350 PF04879 Molybdopterin oxidoreductase Fe4S4 domain H9K48_08350 PF00384 Molybdopterin oxidoreductase H9K48_08350 PF01568 Molydopterin dinucleotide binding domain H9K48_08380 PF00990 Diguanylate cyclase, GGDEF domain H9K48_08380 PF17151 Periplasmic sensor domain H9K48_08390 PF00012 Hsp70 protein H9K48_08395 PF00012 Hsp70 protein H9K48_08420 PF00005 ABC transporter H9K48_08420 PF00664 ABC transporter transmembrane region H9K48_08425 PF00005 ABC transporter H9K48_08425 PF00664 ABC transporter transmembrane region H9K48_08445 PF03222 Tryptophan/tyrosine permease family H9K48_08450 PF00465 Iron-containing alcohol dehydrogenase H9K48_08455 PF01966 HD domain H9K48_08510 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE H9K48_08540 PF01037 Lrp/AsnC ligand binding domain H9K48_08550 PF05947 Type VI secretion system, TssF H9K48_08560 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath H9K48_08575 PF00069 Protein kinase domain H9K48_08600 PF04717 Type VI secretion system, phage-baseplate injector H9K48_08605 PF05638 Type VI secretion system effector, Hcp H9K48_08610 PF00004 ATPase family associated with various cellular activities (AAA) H9K48_08610 PF07724 AAA domain (Cdc48 subfamily) H9K48_08610 PF17871 AAA lid domain H9K48_08610 PF10431 C-terminal, D2-small domain, of ClpB protein H9K48_08615 PF00072 Response regulator receiver domain H9K48_08615 PF00158 Sigma-54 interaction domain H9K48_08615 PF02954 Bacterial regulatory protein, Fis family H9K48_08620 PF00691 OmpA family H9K48_08640 PF01476 LysM domain H9K48_08640 PF01551 Peptidase family M23 H9K48_08640 PF08525 Opacity-associated protein A N-terminal motif H9K48_08645 PF03741 Integral membrane protein TerC family H9K48_08655 PF04055 Radical SAM superfamily H9K48_08660 PF11230 Protein of unknown function (DUF3029) H9K48_08665 PF01810 LysE type translocator H9K48_08670 PF11871 Domain of unknown function (DUF3391) H9K48_08670 PF01966 HD domain H9K48_08675 PF00563 EAL domain H9K48_08675 PF00990 Diguanylate cyclase, GGDEF domain H9K48_08675 PF03707 Bacterial signalling protein N terminal repeat H9K48_08680 PF00158 Sigma-54 interaction domain H9K48_08680 PF02954 Bacterial regulatory protein, Fis family H9K48_08680 PF00072 Response regulator receiver domain H9K48_08685 PF00497 Bacterial extracellular solute-binding proteins, family 3 H9K48_08685 PF00512 His Kinase A (phospho-acceptor) domain H9K48_08685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_08690 PF00939 Sodium:sulfate symporter transmembrane region H9K48_08705 PF00300 Histidine phosphatase superfamily (branch 1) H9K48_08725 PF03466 LysR substrate binding domain H9K48_08725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_08730 PF08543 Phosphomethylpyrimidine kinase H9K48_08745 PF13533 Biotin-lipoyl like H9K48_08790 PF14497 Glutathione S-transferase, C-terminal domain H9K48_08790 PF02798 Glutathione S-transferase, N-terminal domain H9K48_08800 PF04209 homogentisate 1,2-dioxygenase H9K48_08805 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H9K48_08810 PF07687 Peptidase dimerisation domain H9K48_08810 PF01546 Peptidase family M20/M25/M40 H9K48_08815 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle H9K48_08820 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_08825 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_08825 PF12911 N-terminal TM domain of oligopeptide transport permease C H9K48_08830 PF00005 ABC transporter H9K48_08830 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H9K48_08835 PF00005 ABC transporter H9K48_08835 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H9K48_08845 PF01752 Collagenase H9K48_08845 PF08453 Peptidase family M9 N-terminal H9K48_08855 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_08860 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_08865 PF08402 TOBE domain H9K48_08865 PF00005 ABC transporter H9K48_08870 PF00701 Dihydrodipicolinate synthetase family H9K48_08875 PF02423 Ornithine cyclodeaminase/mu-crystallin family H9K48_08890 PF05544 Proline racemase H9K48_08895 PF00171 Aldehyde dehydrogenase family H9K48_08900 PF00392 Bacterial regulatory proteins, gntR family H9K48_08920 PF05971 RNA methyltransferase H9K48_08925 PF01863 Protein of unknown function DUF45 H9K48_08935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_08935 PF03466 LysR substrate binding domain H9K48_08955 PF00005 ABC transporter H9K48_08960 PF01032 FecCD transport family H9K48_08965 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family H9K48_08975 PF00300 Histidine phosphatase superfamily (branch 1) H9K48_08980 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase H9K48_08985 PF02654 Cobalamin-5-phosphate synthase H9K48_08990 PF02277 Phosphoribosyltransferase H9K48_09000 PF00375 Sodium:dicarboxylate symporter family H9K48_09005 PF08411 Exonuclease C-terminal H9K48_09005 PF00929 Exonuclease H9K48_09010 PF03788 LrgA family H9K48_09015 PF04172 LrgB-like family H9K48_09020 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region H9K48_09020 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region H9K48_09025 PF02222 ATP-grasp domain H9K48_09030 PF05724 Thiopurine S-methyltransferase (TPMT) H9K48_09040 PF00216 Bacterial DNA-binding protein H9K48_09050 PF01588 Putative tRNA binding domain H9K48_09050 PF03484 tRNA synthetase B5 domain H9K48_09050 PF03483 B3/4 domain H9K48_09050 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain H9K48_09050 PF03147 Ferredoxin-fold anticodon binding domain H9K48_09055 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain H9K48_09055 PF01409 tRNA synthetases class II core domain (F) H9K48_09060 PF00990 Diguanylate cyclase, GGDEF domain H9K48_09060 PF17158 Membrane-associated sensor, integral membrane domain H9K48_09090 PF01906 Putative heavy-metal-binding H9K48_09095 PF00453 Ribosomal protein L20 H9K48_09100 PF01632 Ribosomal protein L35 H9K48_09105 PF05198 Translation initiation factor IF-3, N-terminal domain H9K48_09105 PF00707 Translation initiation factor IF-3, C-terminal domain H9K48_09110 PF02824 TGS domain H9K48_09110 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) H9K48_09110 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain H9K48_09110 PF03129 Anticodon binding domain H9K48_09125 PF00392 Bacterial regulatory proteins, gntR family H9K48_09125 PF07702 UTRA domain H9K48_09130 PF01979 Amidohydrolase family H9K48_09135 PF00491 Arginase family H9K48_09140 PF01175 Urocanase Rossmann-like domain H9K48_09140 PF17392 Urocanase C-terminal domain H9K48_09140 PF17391 Urocanase N-terminal domain H9K48_09145 PF00221 Aromatic amino acid lyase H9K48_09155 PF04191 Phospholipid methyltransferase H9K48_09160 PF13183 4Fe-4S dicluster domain H9K48_09160 PF02913 FAD linked oxidases, C-terminal domain H9K48_09160 PF01565 FAD binding domain H9K48_09175 PF00691 OmpA family H9K48_09175 PF05736 OprF membrane domain H9K48_09195 PF01259 SAICAR synthetase H9K48_09200 PF09423 PhoD-like phosphatase H9K48_09200 PF16655 PhoD-like phosphatase, N-terminal domain H9K48_09210 PF02253 Phospholipase A1 H9K48_09215 PF00270 DEAD/DEAH box helicase H9K48_09215 PF04408 Helicase associated domain (HA2) H9K48_09215 PF00271 Helicase conserved C-terminal domain H9K48_09215 PF08482 ATP-dependent helicase C-terminal H9K48_09220 PF03949 Malic enzyme, NAD binding domain H9K48_09220 PF00390 Malic enzyme, N-terminal domain H9K48_09225 PF02698 DUF218 domain H9K48_09230 PF00939 Sodium:sulfate symporter transmembrane region H9K48_09235 PF00990 Diguanylate cyclase, GGDEF domain H9K48_09235 PF00072 Response regulator receiver domain H9K48_09245 PF00266 Aminotransferase class-V H9K48_09255 PF07992 Pyridine nucleotide-disulphide oxidoreductase H9K48_09260 PF00664 ABC transporter transmembrane region H9K48_09260 PF00005 ABC transporter H9K48_09265 PF00664 ABC transporter transmembrane region H9K48_09265 PF00005 ABC transporter H9K48_09270 PF00291 Pyridoxal-phosphate dependent enzyme H9K48_09275 PF00266 Aminotransferase class-V H9K48_09285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_09285 PF00497 Bacterial extracellular solute-binding proteins, family 3 H9K48_09285 PF00512 His Kinase A (phospho-acceptor) domain H9K48_09300 PF04994 TfoX C-terminal domain H9K48_09300 PF04993 TfoX N-terminal domain H9K48_09310 PF03956 Lysine exporter LysO H9K48_09320 PF00282 Pyridoxal-dependent decarboxylase conserved domain H9K48_09325 PF01380 SIS domain H9K48_09325 PF01418 Helix-turn-helix domain, rpiR family H9K48_09330 PF00465 Iron-containing alcohol dehydrogenase H9K48_09335 PF00462 Glutaredoxin H9K48_09340 PF06826 Predicted Permease Membrane Region H9K48_09340 PF02080 TrkA-C domain H9K48_09345 PF07055 Enoyl reductase FAD binding domain H9K48_09345 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase H9K48_09345 PF12241 Trans-2-enoyl-CoA reductase catalytic region H9K48_09350 PF09317 Domain of unknown function (DUF1974) H9K48_09350 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H9K48_09350 PF02770 Acyl-CoA dehydrogenase, middle domain H9K48_09350 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H9K48_09355 PF00440 Bacterial regulatory proteins, tetR family H9K48_09355 PF16295 Tetracyclin repressor-like, C-terminal domain H9K48_09360 PF06965 Na+/H+ antiporter 1 H9K48_09375 PF00005 ABC transporter H9K48_09380 PF01554 MatE H9K48_09385 PF13460 NAD(P)H-binding H9K48_09385 PF11066 Protein of unknown function (DUF2867) H9K48_09390 PF03264 NapC/NirT cytochrome c family, N-terminal region H9K48_09405 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) H9K48_09420 PF07690 Major Facilitator Superfamily H9K48_09425 PF00849 RNA pseudouridylate synthase H9K48_09425 PF01479 S4 domain H9K48_09430 PF04851 Type III restriction enzyme, res subunit H9K48_09430 PF00271 Helicase conserved C-terminal domain H9K48_09440 PF00486 Transcriptional regulatory protein, C terminal H9K48_09440 PF00072 Response regulator receiver domain H9K48_09445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_09450 PF01386 Ribosomal L25p family H9K48_09465 PF02872 5'-nucleotidase, C-terminal domain H9K48_09465 PF00149 Calcineurin-like phosphoesterase H9K48_09475 PF06945 Protein of unknown function (DUF1289) H9K48_09485 PF00196 Bacterial regulatory proteins, luxR family H9K48_09485 PF00072 Response regulator receiver domain H9K48_09490 PF00512 His Kinase A (phospho-acceptor) domain H9K48_09490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_09500 PF07992 Pyridine nucleotide-disulphide oxidoreductase H9K48_09500 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster H9K48_09510 PF09335 SNARE associated Golgi protein H9K48_09515 PF13416 Bacterial extracellular solute-binding protein H9K48_09520 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_09525 PF00005 ABC transporter H9K48_09530 PF01066 CDP-alcohol phosphatidyltransferase H9K48_09540 PF00158 Sigma-54 interaction domain H9K48_09540 PF01590 GAF domain H9K48_09545 PF03063 Prismane/CO dehydrogenase family H9K48_09550 PF00111 2Fe-2S iron-sulfur cluster binding domain H9K48_09550 PF00175 Oxidoreductase NAD-binding domain H9K48_09550 PF00970 Oxidoreductase FAD-binding domain H9K48_09560 PF00849 RNA pseudouridylate synthase H9K48_09565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9K48_09565 PF00672 HAMP domain H9K48_09565 PF12729 Four helix bundle sensory module for signal transduction H9K48_09570 PF00209 Sodium:neurotransmitter symporter family H9K48_09575 PF13091 PLD-like domain H9K48_09575 PF13396 Phospholipase_D-nuclease N-terminal H9K48_09580 PF01053 Cys/Met metabolism PLP-dependent enzyme H9K48_09585 PF00561 alpha/beta hydrolase fold H9K48_09590 PF03280 Proteobacterial lipase chaperone protein H9K48_09595 PF03352 Methyladenine glycosylase H9K48_09600 PF00873 AcrB/AcrD/AcrF family H9K48_09610 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H9K48_09615 PF04024 PspC domain H9K48_09620 PF06667 Phage shock protein B H9K48_09625 PF04012 PspA/IM30 family H9K48_09630 PF02954 Bacterial regulatory protein, Fis family H9K48_09630 PF00158 Sigma-54 interaction domain H9K48_09635 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle H9K48_09640 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_09645 PF12911 N-terminal TM domain of oligopeptide transport permease C H9K48_09645 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_09650 PF00005 ABC transporter H9K48_09650 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H9K48_09655 PF00005 ABC transporter H9K48_09665 PF02833 DHHA2 domain H9K48_09665 PF01368 DHH family H9K48_09675 PF16874 Glycosyl hydrolase family 36 C-terminal domain H9K48_09675 PF16875 Glycosyl hydrolase family 36 N-terminal domain H9K48_09680 PF00384 Molybdopterin oxidoreductase H9K48_09680 PF01568 Molydopterin dinucleotide binding domain H9K48_09680 PF18364 Molybdopterin oxidoreductase N-terminal domain H9K48_09685 PF03264 NapC/NirT cytochrome c family, N-terminal region H9K48_09690 PF06796 Periplasmic nitrate reductase protein NapE H9K48_09695 PF03649 Uncharacterised protein family (UPF0014) H9K48_09705 PF01226 Formate/nitrite transporter H9K48_09730 PF02698 DUF218 domain H9K48_09735 PF00265 Thymidine kinase H9K48_09740 PF01406 tRNA synthetases class I (C) catalytic domain H9K48_09740 PF09190 DALR domain H9K48_09745 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD H9K48_09750 PF00149 Calcineurin-like phosphoesterase H9K48_09755 PF00563 EAL domain H9K48_09755 PF08668 HDOD domain H9K48_09760 PF02810 SEC-C motif H9K48_09765 PF01502 Phosphoribosyl-AMP cyclohydrolase H9K48_09765 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase H9K48_09770 PF00977 Histidine biosynthesis protein H9K48_09775 PF00977 Histidine biosynthesis protein H9K48_09780 PF00117 Glutamine amidotransferase class-I H9K48_09785 PF08645 Polynucleotide kinase 3 phosphatase H9K48_09785 PF00475 Imidazoleglycerol-phosphate dehydratase H9K48_09790 PF00155 Aminotransferase class I and II H9K48_09795 PF00815 Histidinol dehydrogenase H9K48_09800 PF01634 ATP phosphoribosyltransferase H9K48_09800 PF08029 HisG, C-terminal domain H9K48_09805 PF00158 Sigma-54 interaction domain H9K48_09805 PF00072 Response regulator receiver domain H9K48_09805 PF02954 Bacterial regulatory protein, Fis family H9K48_09815 PF03553 Na+/H+ antiporter family H9K48_09820 PF00816 H-NS histone family H9K48_09825 PF00294 pfkB family carbohydrate kinase H9K48_09840 PF04356 Protein of unknown function (DUF489) H9K48_09845 PF08328 Adenylosuccinate lyase C-terminal H9K48_09845 PF00206 Lyase H9K48_09880 PF00106 short chain dehydrogenase H9K48_09890 PF01435 Peptidase family M48 H9K48_09905 PF08241 Methyltransferase domain H9K48_09910 PF00155 Aminotransferase class I and II H9K48_09915 PF06968 Biotin and Thiamin Synthesis associated domain H9K48_09915 PF04055 Radical SAM superfamily H9K48_09920 PF00202 Aminotransferase class-III H9K48_09925 PF01258 Prokaryotic dksA/traR C4-type zinc finger H9K48_09930 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) H9K48_09930 PF02403 Seryl-tRNA synthetase N-terminal domain H9K48_09935 PF00004 ATPase family associated with various cellular activities (AAA) H9K48_09935 PF12002 MgsA AAA+ ATPase C terminal H9K48_09935 PF16193 AAA C-terminal domain H9K48_09940 PF03548 Outer membrane lipoprotein carrier protein LolA H9K48_09945 PF09397 Ftsk gamma domain H9K48_09945 PF01580 FtsK/SpoIIIE family H9K48_09945 PF13491 4TM region of DNA translocase FtsK/SpoIIIE H9K48_09945 PF17854 FtsK alpha domain H9K48_09950 PF01037 Lrp/AsnC ligand binding domain H9K48_09955 PF01262 Alanine dehydrogenase/PNT, C-terminal domain H9K48_09955 PF05222 Alanine dehydrogenase/PNT, N-terminal domain H9K48_09965 PF03466 LysR substrate binding domain H9K48_09965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_09975 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) H9K48_09980 PF03372 Endonuclease/Exonuclease/phosphatase family H9K48_09990 PF00579 tRNA synthetases class I (W and Y) H9K48_10005 PF00873 AcrB/AcrD/AcrF family H9K48_10010 PF00529 HlyD membrane-fusion protein of T1SS H9K48_10010 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H9K48_10015 PF00672 HAMP domain H9K48_10015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9K48_10015 PF12729 Four helix bundle sensory module for signal transduction H9K48_10025 PF06610 L-alanine exporter H9K48_10030 PF00512 His Kinase A (phospho-acceptor) domain H9K48_10030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_10030 PF09308 LuxQ, periplasmic H9K48_10030 PF00072 Response regulator receiver domain H9K48_10040 PF03738 Glutathionylspermidine synthase preATP-grasp H9K48_10050 PF03994 Domain of Unknown Function (DUF350) H9K48_10060 PF02445 Quinolinate synthetase A protein H9K48_10065 PF13174 Tetratricopeptide repeat H9K48_10065 PF16331 TolA binding protein trimerisation H9K48_10070 PF00691 OmpA family H9K48_10075 PF04052 TolB amino-terminal domain H9K48_10075 PF07676 WD40-like Beta Propeller Repeat H9K48_10085 PF02472 Biopolymer transport protein ExbD/TolR H9K48_10090 PF01618 MotA/TolQ/ExbB proton channel family H9K48_10095 PF03061 Thioesterase superfamily H9K48_10105 PF08173 Membrane bound YbgT-like protein H9K48_10110 PF02322 Cytochrome bd terminal oxidase subunit II H9K48_10115 PF01654 Cytochrome bd terminal oxidase subunit I H9K48_10120 PF05496 Holliday junction DNA helicase RuvB P-loop domain H9K48_10120 PF05491 RuvB C-terminal winged helix domain H9K48_10120 PF17864 RuvB AAA lid domain H9K48_10125 PF07499 RuvA, C-terminal domain H9K48_10125 PF01330 RuvA N terminal domain H9K48_10130 PF00672 HAMP domain H9K48_10130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9K48_10130 PF02203 Tar ligand binding domain homologue H9K48_10135 PF02075 Crossover junction endodeoxyribonuclease RuvC H9K48_10140 PF00152 tRNA synthetases class II (D, K and N) H9K48_10140 PF01336 OB-fold nucleic acid binding domain H9K48_10140 PF02938 GAD domain H9K48_10145 PF01904 Protein of unknown function DUF72 H9K48_10150 PF13649 Methyltransferase domain H9K48_10155 PF08003 Protein of unknown function (DUF1698) H9K48_10160 PF08443 RimK-like ATP-grasp domain H9K48_10160 PF18030 RimK PreATP-grasp domain H9K48_10170 PF08443 RimK-like ATP-grasp domain H9K48_10170 PF18030 RimK PreATP-grasp domain H9K48_10180 PF04310 MukB N-terminal H9K48_10180 PF16330 MukB hinge domain H9K48_10185 PF04288 MukE-like family H9K48_10190 PF17192 MukF middle domain H9K48_10190 PF17193 MukF C-terminal domain H9K48_10190 PF03882 MukF winged-helix domain H9K48_10195 PF13847 Methyltransferase domain H9K48_10200 PF02698 DUF218 domain H9K48_10205 PF00072 Response regulator receiver domain H9K48_10205 PF00486 Transcriptional regulatory protein, C terminal H9K48_10210 PF02613 Nitrate reductase delta subunit H9K48_10215 PF00356 Bacterial regulatory proteins, lacI family H9K48_10220 PF04993 TfoX N-terminal domain H9K48_10220 PF04994 TfoX C-terminal domain H9K48_10240 PF08323 Starch synthase catalytic domain H9K48_10240 PF00534 Glycosyl transferases group 1 H9K48_10245 PF00483 Nucleotidyl transferase H9K48_10250 PF08272 Topoisomerase I zinc-ribbon-like H9K48_10250 PF01131 DNA topoisomerase H9K48_10250 PF01751 Toprim domain H9K48_10250 PF01396 Topoisomerase DNA binding C4 zinc finger H9K48_10255 PF10692 Protein of unknown function (DUF2498) H9K48_10260 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) H9K48_10270 PF03588 Leucyl/phenylalanyl-tRNA protein transferase H9K48_10275 PF04377 Arginine-tRNA-protein transferase, C terminus H9K48_10275 PF04376 Arginine-tRNA-protein transferase, N terminus H9K48_10280 PF01176 Translation initiation factor 1A / IF-1 H9K48_10290 PF10431 C-terminal, D2-small domain, of ClpB protein H9K48_10290 PF02861 Clp amino terminal domain, pathogenicity island component H9K48_10290 PF17871 AAA lid domain H9K48_10290 PF07724 AAA domain (Cdc48 subfamily) H9K48_10290 PF00004 ATPase family associated with various cellular activities (AAA) H9K48_10295 PF02617 ATP-dependent Clp protease adaptor protein ClpS H9K48_10300 PF00313 'Cold-shock' DNA-binding domain H9K48_10305 PF03971 Monomeric isocitrate dehydrogenase H9K48_10310 PF00849 RNA pseudouridylate synthase H9K48_10315 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) H9K48_10325 PF06733 DEAD_2 H9K48_10325 PF13307 Helicase C-terminal domain H9K48_10330 PF01925 Sulfite exporter TauE/SafE H9K48_10335 PF07445 Primosomal replication protein priC H9K48_10340 PF10689 Protein of unknown function (DUF2496) H9K48_10345 PF03372 Endonuclease/Exonuclease/phosphatase family H9K48_10355 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_10360 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_10365 PF00497 Bacterial extracellular solute-binding proteins, family 3 H9K48_10370 PF00005 ABC transporter H9K48_10385 PF01228 Glycine radical H9K48_10385 PF02901 Pyruvate formate lyase-like H9K48_10395 PF04055 Radical SAM superfamily H9K48_10405 PF03887 YfbU domain H9K48_10410 PF06798 PrkA serine protein kinase C-terminal domain H9K48_10410 PF08298 PrkA AAA domain H9K48_10415 PF04285 Protein of unknown function (DUF444) H9K48_10420 PF04293 SpoVR like protein H9K48_10425 PF02348 Cytidylyltransferase H9K48_10430 PF03966 Trm112p-like protein H9K48_10435 PF02606 Tetraacyldisaccharide-1-P 4'-kinase H9K48_10440 PF00664 ABC transporter transmembrane region H9K48_10440 PF00005 ABC transporter H9K48_10445 PF13567 Domain of unknown function (DUF4131) H9K48_10445 PF03772 Competence protein H9K48_10445 PF00753 Metallo-beta-lactamase superfamily H9K48_10455 PF12704 MacB-like periplasmic core domain H9K48_10455 PF02687 FtsX-like permease family H9K48_10460 PF00005 ABC transporter H9K48_10465 PF12704 MacB-like periplasmic core domain H9K48_10465 PF02687 FtsX-like permease family H9K48_10475 PF02559 CarD-like/TRCF domain H9K48_10475 PF00270 DEAD/DEAH box helicase H9K48_10475 PF00271 Helicase conserved C-terminal domain H9K48_10475 PF03461 TRCF domain H9K48_10475 PF17757 UvrB interaction domain H9K48_10490 PF07992 Pyridine nucleotide-disulphide oxidoreductase H9K48_10495 PF05728 Uncharacterised protein family (UPF0227) H9K48_10505 PF08139 Prokaryotic membrane lipoprotein lipid attachment site H9K48_10505 PF13036 Peptidoglycan-synthase activator LpoB H9K48_10520 PF01230 HIT domain H9K48_10525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9K48_10525 PF00672 HAMP domain H9K48_10535 PF01048 Phosphorylase superfamily H9K48_10540 PF00403 Heavy-metal-associated domain H9K48_10545 PF00571 CBS domain H9K48_10545 PF00478 IMP dehydrogenase / GMP reductase domain H9K48_10555 PF11953 Domain of unknown function (DUF3470) H9K48_10555 PF00037 4Fe-4S binding domain H9K48_10560 PF00588 SpoU rRNA Methylase family H9K48_10560 PF08032 RNA 2'-O ribose methyltransferase substrate binding H9K48_10615 PF00350 Dynamin family H9K48_10635 PF17152 Periplasmic sensor domain H9K48_10635 PF00990 Diguanylate cyclase, GGDEF domain H9K48_10645 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain H9K48_10650 PF09619 Type III secretion system lipoprotein chaperone (YscW) H9K48_10665 PF13404 AsnC-type helix-turn-helix domain H9K48_10665 PF01037 Lrp/AsnC ligand binding domain H9K48_10670 PF00291 Pyridoxal-phosphate dependent enzyme H9K48_10690 PF00873 AcrB/AcrD/AcrF family H9K48_10695 PF13533 Biotin-lipoyl like H9K48_10740 PF07690 Major Facilitator Superfamily H9K48_10745 PF03601 Conserved hypothetical protein 698 H9K48_10755 PF13193 AMP-binding enzyme C-terminal domain H9K48_10755 PF00501 AMP-binding enzyme H9K48_10760 PF13378 Enolase C-terminal domain-like H9K48_10765 PF00378 Enoyl-CoA hydratase/isomerase H9K48_10770 PF12697 Alpha/beta hydrolase family H9K48_10775 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain H9K48_10775 PF16582 Middle domain of thiamine pyrophosphate H9K48_10775 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain H9K48_10780 PF00425 chorismate binding enzyme H9K48_10785 PF00155 Aminotransferase class I and II H9K48_10795 PF13286 Phosphohydrolase-associated domain H9K48_10795 PF01966 HD domain H9K48_10815 PF13145 PPIC-type PPIASE domain H9K48_10820 PF00216 Bacterial DNA-binding protein H9K48_10825 PF00004 ATPase family associated with various cellular activities (AAA) H9K48_10825 PF05362 Lon protease (S16) C-terminal proteolytic domain H9K48_10825 PF02190 ATP-dependent protease La (LON) substrate-binding domain H9K48_10830 PF07724 AAA domain (Cdc48 subfamily) H9K48_10830 PF10431 C-terminal, D2-small domain, of ClpB protein H9K48_10830 PF06689 ClpX C4-type zinc finger H9K48_10835 PF00574 Clp protease H9K48_10840 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase H9K48_10840 PF05698 Bacterial trigger factor protein (TF) C-terminus H9K48_10840 PF05697 Bacterial trigger factor protein (TF) H9K48_10850 PF00512 His Kinase A (phospho-acceptor) domain H9K48_10850 PF02743 Cache domain H9K48_10850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_10855 PF00158 Sigma-54 interaction domain H9K48_10855 PF02954 Bacterial regulatory protein, Fis family H9K48_10855 PF00072 Response regulator receiver domain H9K48_10865 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component H9K48_10870 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component H9K48_10875 PF03480 Bacterial extracellular solute-binding protein, family 7 H9K48_10880 PF02696 Uncharacterized ACR, YdiU/UPF0061 family H9K48_10895 PF02386 Cation transport protein H9K48_10900 PF02080 TrkA-C domain H9K48_10900 PF02254 TrkA-N domain H9K48_10905 PF00270 DEAD/DEAH box helicase H9K48_10905 PF00271 Helicase conserved C-terminal domain H9K48_10910 PF01595 Cyclin M transmembrane N-terminal domain H9K48_10910 PF03471 Transporter associated domain H9K48_10910 PF00571 CBS domain H9K48_10920 PF04820 Tryptophan halogenase H9K48_10945 PF00550 Phosphopantetheine attachment site H9K48_10950 PF00550 Phosphopantetheine attachment site H9K48_10965 PF07977 FabA-like domain H9K48_10970 PF00535 Glycosyl transferase family 2 H9K48_10975 PF00221 Aromatic amino acid lyase H9K48_11000 PF00109 Beta-ketoacyl synthase, N-terminal domain H9K48_11000 PF02801 Beta-ketoacyl synthase, C-terminal domain H9K48_11005 PF07977 FabA-like domain H9K48_11015 PF02801 Beta-ketoacyl synthase, C-terminal domain H9K48_11015 PF00109 Beta-ketoacyl synthase, N-terminal domain H9K48_11055 PF10137 Predicted nucleotide-binding protein containing TIR-like domain H9K48_11095 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain H9K48_11095 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain H9K48_11100 PF07670 Nucleoside recognition H9K48_11100 PF07662 Na+ dependent nucleoside transporter C-terminus H9K48_11100 PF01773 Na+ dependent nucleoside transporter N-terminus H9K48_11105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_11105 PF03466 LysR substrate binding domain H9K48_11110 PF13406 Transglycosylase SLT domain H9K48_11115 PF05166 YcgL domain H9K48_11120 PF05209 Septum formation inhibitor MinC, N-terminal domain H9K48_11120 PF03775 Septum formation inhibitor MinC, C-terminal domain H9K48_11125 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain H9K48_11130 PF03776 Septum formation topological specificity factor MinE H9K48_11135 PF01612 3'-5' exonuclease H9K48_11135 PF00570 HRDC domain H9K48_11140 PF13193 AMP-binding enzyme C-terminal domain H9K48_11140 PF00501 AMP-binding enzyme H9K48_11145 PF00561 alpha/beta hydrolase fold H9K48_11160 PF00814 Glycoprotease family H9K48_11165 PF04851 Type III restriction enzyme, res subunit H9K48_11165 PF13307 Helicase C-terminal domain H9K48_11170 PF00551 Formyl transferase H9K48_11170 PF01842 ACT domain H9K48_11175 PF06185 YecM protein H9K48_11180 PF05746 DALR anticodon binding domain H9K48_11180 PF03485 Arginyl tRNA synthetase N terminal domain H9K48_11180 PF00750 tRNA synthetases class I (R) H9K48_11195 PF07664 Ferrous iron transport protein B C terminus H9K48_11195 PF17910 FeoB cytosolic helical domain H9K48_11195 PF07670 Nucleoside recognition H9K48_11195 PF02421 Ferrous iron transport protein B H9K48_11200 PF04023 FeoA domain H9K48_11205 PF12833 Helix-turn-helix domain H9K48_11205 PF02311 AraC-like ligand binding domain H9K48_11210 PF01297 Zinc-uptake complex component A periplasmic H9K48_11215 PF00005 ABC transporter H9K48_11220 PF00950 ABC 3 transport family H9K48_11225 PF00549 CoA-ligase H9K48_11225 PF02629 CoA binding domain H9K48_11230 PF08442 ATP-grasp domain H9K48_11230 PF00549 CoA-ligase H9K48_11235 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) H9K48_11235 PF00364 Biotin-requiring enzyme H9K48_11235 PF02817 e3 binding domain H9K48_11240 PF02779 Transketolase, pyrimidine binding domain H9K48_11240 PF16870 2-oxoglutarate dehydrogenase C-terminal H9K48_11240 PF00676 Dehydrogenase E1 component H9K48_11240 PF16078 2-oxoglutarate dehydrogenase N-terminus H9K48_11245 PF13085 2Fe-2S iron-sulfur cluster binding domain H9K48_11250 PF02910 Fumarate reductase flavoprotein C-term H9K48_11250 PF00890 FAD binding domain H9K48_11255 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit H9K48_11260 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit H9K48_11265 PF00285 Citrate synthase, C-terminal domain H9K48_11270 PF01784 NIF3 (NGG1p interacting factor 3) H9K48_11280 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II H9K48_11280 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I H9K48_11280 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain H9K48_11280 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III H9K48_11285 PF03925 SeqA protein C-terminal domain H9K48_11285 PF17206 SeqA protein N-terminal domain H9K48_11290 PF12697 Alpha/beta hydrolase family H9K48_11300 PF00258 Flavodoxin H9K48_11310 PF01475 Ferric uptake regulator family H9K48_11315 PF00749 tRNA synthetases class I (E and Q), catalytic domain H9K48_11315 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain H9K48_11320 PF00367 phosphotransferase system, EIIB H9K48_11320 PF02378 Phosphotransferase system, EIIC H9K48_11325 PF01979 Amidohydrolase family H9K48_11330 PF00480 ROK family H9K48_11330 PF01047 MarR family H9K48_11335 PF00999 Sodium/hydrogen exchanger family H9K48_11335 PF02254 TrkA-N domain H9K48_11340 PF00733 Asparagine synthase H9K48_11340 PF13537 Glutamine amidotransferase domain H9K48_11345 PF02357 Transcription termination factor nusG H9K48_11350 PF00854 POT family H9K48_11355 PF00762 Ferrochelatase H9K48_11360 PF05191 Adenylate kinase, active site lid H9K48_11365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_11365 PF00183 Hsp90 protein H9K48_11370 PF00486 Transcriptional regulatory protein, C terminal H9K48_11375 PF17323 Trans-membrane regulatory protein ToxS H9K48_11390 PF12850 Calcineurin-like phosphoesterase superfamily domain H9K48_11405 PF07556 Protein of unknown function (DUF1538) H9K48_11410 PF07556 Protein of unknown function (DUF1538) H9K48_11415 PF08338 Domain of unknown function (DUF1731) H9K48_11415 PF01370 NAD dependent epimerase/dehydratase family H9K48_11420 PF00106 short chain dehydrogenase H9K48_11425 PF00085 Thioredoxin H9K48_11430 PF01145 SPFH domain / Band 7 family H9K48_11430 PF16200 C-terminal region of band_7 H9K48_11445 PF03573 outer membrane porin, OprD family H9K48_11450 PF03120 NAD-dependent DNA ligase OB-fold domain H9K48_11450 PF00533 BRCA1 C Terminus (BRCT) domain H9K48_11450 PF01653 NAD-dependent DNA ligase adenylation domain H9K48_11450 PF03119 NAD-dependent DNA ligase C4 zinc finger domain H9K48_11450 PF12826 Helix-hairpin-helix motif H9K48_11455 PF04354 ZipA, C-terminal FtsZ-binding domain H9K48_11465 PF00291 Pyridoxal-phosphate dependent enzyme H9K48_11470 PF00381 PTS HPr component phosphorylation site H9K48_11475 PF00391 PEP-utilising enzyme, mobile domain H9K48_11475 PF05524 PEP-utilising enzyme, N-terminal H9K48_11475 PF02896 PEP-utilising enzyme, TIM barrel domain H9K48_11480 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 H9K48_11485 PF00669 Bacterial flagellin N-terminal helical region H9K48_11485 PF07196 Flagellin hook IN motif H9K48_11485 PF00700 Bacterial flagellin C-terminal helical region H9K48_11490 PF07196 Flagellin hook IN motif H9K48_11490 PF00669 Bacterial flagellin N-terminal helical region H9K48_11490 PF00700 Bacterial flagellin C-terminal helical region H9K48_11495 PF00700 Bacterial flagellin C-terminal helical region H9K48_11495 PF07196 Flagellin hook IN motif H9K48_11495 PF00669 Bacterial flagellin N-terminal helical region H9K48_11500 PF00669 Bacterial flagellin N-terminal helical region H9K48_11505 PF07196 Flagellin hook IN motif H9K48_11505 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H9K48_11510 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase H9K48_11510 PF10135 Rod binding protein H9K48_11515 PF02119 Flagellar P-ring protein H9K48_11520 PF02107 Flagellar L-ring protein H9K48_11525 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H9K48_11525 PF00460 Flagella basal body rod protein H9K48_11530 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H9K48_11530 PF00460 Flagella basal body rod protein H9K48_11535 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H9K48_11535 PF00460 Flagella basal body rod protein H9K48_11535 PF07559 Flagellar basal body protein FlaE H9K48_11540 PF03963 Flagellar hook capping protein - N-terminal region H9K48_11540 PF13860 FlgD Ig-like domain H9K48_11540 PF13861 FlgD Tudor-like domain H9K48_11545 PF00460 Flagella basal body rod protein H9K48_11545 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H9K48_11550 PF00460 Flagella basal body rod protein H9K48_11555 PF01739 CheR methyltransferase, SAM binding domain H9K48_11555 PF03705 CheR methyltransferase, all-alpha domain H9K48_11560 PF01584 CheW-like domain H9K48_11560 PF00072 Response regulator receiver domain H9K48_11605 PF01389 OmpA-like transmembrane domain H9K48_11605 PF00691 OmpA family H9K48_11610 PF00749 tRNA synthetases class I (E and Q), catalytic domain H9K48_11615 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) H9K48_11620 PF13609 Gram-negative porin H9K48_11625 PF00403 Heavy-metal-associated domain H9K48_11640 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain H9K48_11640 PF02838 Glycosyl hydrolase family 20, domain 2 H9K48_11640 PF00728 Glycosyl hydrolase family 20, catalytic domain H9K48_11640 PF03173 Putative carbohydrate binding domain H9K48_11660 PF01713 Smr domain H9K48_11665 PF00849 RNA pseudouridylate synthase H9K48_11665 PF01479 S4 domain H9K48_11670 PF04073 Aminoacyl-tRNA editing domain H9K48_11675 PF02872 5'-nucleotidase, C-terminal domain H9K48_11675 PF00149 Calcineurin-like phosphoesterase H9K48_11680 PF00793 DAHP synthetase I family H9K48_11685 PF13369 Transglutaminase-like superfamily H9K48_11690 PF04247 Invasion gene expression up-regulator, SirB H9K48_11695 PF13847 Methyltransferase domain H9K48_11695 PF17827 PrmC N-terminal domain H9K48_11700 PF00472 RF-1 domain H9K48_11700 PF03462 PCRF domain H9K48_11705 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain H9K48_11705 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain H9K48_11705 PF01488 Shikimate / quinate 5-dehydrogenase H9K48_11710 PF03550 Outer membrane lipoprotein LolB H9K48_11715 PF08544 GHMP kinases C terminal H9K48_11715 PF00288 GHMP kinases N terminal domain H9K48_11720 PF14572 Phosphoribosyl synthetase-associated domain H9K48_11720 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase H9K48_11725 PF01195 Peptidyl-tRNA hydrolase H9K48_11730 PF01926 50S ribosome-binding GTPase H9K48_11730 PF06071 Protein of unknown function (DUF933) H9K48_11845 PF01494 FAD binding domain H9K48_11850 PF01938 TRAM domain H9K48_11850 PF00919 Uncharacterized protein family UPF0004 H9K48_11850 PF04055 Radical SAM superfamily H9K48_11855 PF02562 PhoH-like protein H9K48_11860 PF02130 Uncharacterized protein family UPF0054 H9K48_11865 PF00571 CBS domain H9K48_11865 PF03471 Transporter associated domain H9K48_11870 PF00795 Carbon-nitrogen hydrolase H9K48_11875 PF07295 Zinc-ribbon containing domain H9K48_11880 PF13603 Leucyl-tRNA synthetase, Domain 2 H9K48_11880 PF00133 tRNA synthetases class I (I, L, M and V) H9K48_11880 PF08264 Anticodon-binding domain of tRNA H9K48_11885 PF04390 Lipopolysaccharide-assembly H9K48_11890 PF14840 Processivity clamp loader gamma complex DNA pol III C-term H9K48_11890 PF06144 DNA polymerase III, delta subunit H9K48_11900 PF02590 Predicted SPOUT methyltransferase H9K48_11905 PF03717 Penicillin-binding Protein dimerisation domain H9K48_11905 PF00905 Penicillin binding protein transpeptidase domain H9K48_11910 PF01098 Cell cycle protein H9K48_11915 PF05036 Sporulation related domain H9K48_11915 PF03330 Lytic transglycolase H9K48_11920 PF07943 Penicillin-binding protein 5, C-terminal domain H9K48_11920 PF00768 D-alanyl-D-alanine carboxypeptidase H9K48_11925 PF04359 Protein of unknown function (DUF493) H9K48_11930 PF03099 Biotin/lipoate A/B protein ligase family H9K48_11935 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family H9K48_11935 PF04055 Radical SAM superfamily H9K48_11940 PF00464 Serine hydroxymethyltransferase H9K48_11945 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) H9K48_11945 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 H9K48_11960 PF00128 Alpha amylase, catalytic domain H9K48_11960 PF16657 Maltogenic Amylase, C-terminal domain H9K48_11965 PF02378 Phosphotransferase system, EIIC H9K48_11965 PF00367 phosphotransferase system, EIIB H9K48_11970 PF00356 Bacterial regulatory proteins, lacI family H9K48_11980 PF00005 ABC transporter H9K48_11980 PF09383 NIL domain H9K48_11985 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_11990 PF03180 NLPA lipoprotein H9K48_11995 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) H9K48_12000 PF07348 Syd protein (SUKH-2) H9K48_12005 PF14489 QueF-like protein H9K48_12005 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term H9K48_12015 PF00990 Diguanylate cyclase, GGDEF domain H9K48_12020 PF03641 Possible lysine decarboxylase H9K48_12020 PF11892 Domain of unknown function (DUF3412) H9K48_12020 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases H9K48_12025 PF01367 5'-3' exonuclease, C-terminal SAM fold H9K48_12025 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain H9K48_12030 PF01223 DNA/RNA non-specific endonuclease H9K48_12035 PF01728 FtsJ-like methyltransferase H9K48_12035 PF18125 RlmM ferredoxin-like domain H9K48_12040 PF04241 Protein of unknown function (DUF423) H9K48_12050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_12050 PF03466 LysR substrate binding domain H9K48_12055 PF02568 Thiamine biosynthesis protein (ThiI) H9K48_12055 PF02926 THUMP domain H9K48_12060 PF00691 OmpA family H9K48_12065 PF01618 MotA/TolQ/ExbB proton channel family H9K48_12070 PF02609 Exonuclease VII small subunit H9K48_12075 PF00348 Polyprenyl synthetase H9K48_12080 PF13292 1-deoxy-D-xylulose-5-phosphate synthase H9K48_12080 PF02779 Transketolase, pyrimidine binding domain H9K48_12080 PF02780 Transketolase, C-terminal domain H9K48_12085 PF04608 Phosphatidylglycerophosphatase A H9K48_12090 PF00586 AIR synthase related protein, N-terminal domain H9K48_12090 PF02769 AIR synthase related protein, C-terminal domain H9K48_12095 PF01029 NusB family H9K48_12100 PF00885 6,7-dimethyl-8-ribityllumazine synthase H9K48_12105 PF00925 GTP cyclohydrolase II H9K48_12105 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase H9K48_12110 PF00677 Lumazine binding domain H9K48_12115 PF01872 RibD C-terminal domain H9K48_12115 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region H9K48_12120 PF03477 ATP cone domain H9K48_12125 PF00171 Aldehyde dehydrogenase family H9K48_12130 PF00696 Amino acid kinase family H9K48_12130 PF01472 PUA domain H9K48_12135 PF07417 Sigma factor-binding transcriptional regulator Crl H9K48_12140 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) H9K48_12145 PF00156 Phosphoribosyl transferase domain H9K48_12150 PF00860 Permease family H9K48_12155 PF07687 Peptidase dimerisation domain H9K48_12155 PF01546 Peptidase family M20/M25/M40 H9K48_12180 PF02769 AIR synthase related protein, C-terminal domain H9K48_12180 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain H9K48_12180 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal H9K48_12185 PF01464 Transglycosylase SLT domain H9K48_12185 PF00497 Bacterial extracellular solute-binding proteins, family 3 H9K48_12190 PF14437 MafB19-like deaminase H9K48_12195 PF03806 AbgT putative transporter family H9K48_12215 PF07963 Prokaryotic N-terminal methylation motif H9K48_12215 PF00114 Pilin (bacterial filament) H9K48_12220 PF00114 Pilin (bacterial filament) H9K48_12220 PF07963 Prokaryotic N-terminal methylation motif H9K48_12225 PF01556 DnaJ C terminal domain H9K48_12225 PF00684 DnaJ central domain H9K48_12225 PF00226 DnaJ domain H9K48_12230 PF00012 Hsp70 protein H9K48_12235 PF00375 Sodium:dicarboxylate symporter family H9K48_12240 PF01025 GrpE H9K48_12245 PF01513 ATP-NAD kinase H9K48_12255 PF02463 RecF/RecN/SMC N terminal domain H9K48_12260 PF04355 SmpA / OmlA family H9K48_12265 PF03658 RnfH family Ubiquitin H9K48_12270 PF03364 Polyketide cyclase / dehydrase and lipid transport H9K48_12275 PF01668 SmpB protein H9K48_12330 PF02223 Thymidylate kinase H9K48_12360 PF06445 GyrI-like small molecule binding domain H9K48_12360 PF12833 Helix-turn-helix domain H9K48_12365 PF02810 SEC-C motif H9K48_12365 PF01043 SecA preprotein cross-linking domain H9K48_12365 PF07516 SecA Wing and Scaffold domain H9K48_12365 PF07517 SecA DEAD-like domain H9K48_12415 PF03466 LysR substrate binding domain H9K48_12415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_12420 PF00583 Acetyltransferase (GNAT) family H9K48_12420 PF00795 Carbon-nitrogen hydrolase H9K48_12440 PF00202 Aminotransferase class-III H9K48_12445 PF01053 Cys/Met metabolism PLP-dependent enzyme H9K48_12450 PF07969 Amidohydrolase family H9K48_12465 PF03466 LysR substrate binding domain H9K48_12465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_12470 PF01266 FAD dependent oxidoreductase H9K48_12475 PF01235 Sodium:alanine symporter family H9K48_12485 PF01184 GPR1/FUN34/yaaH family H9K48_12490 PF06483 Chitinase C H9K48_12490 PF00704 Glycosyl hydrolases family 18 H9K48_12495 PF03553 Na+/H+ antiporter family H9K48_12500 PF00117 Glutamine amidotransferase class-I H9K48_12500 PF00958 GMP synthase C terminal domain H9K48_12500 PF02540 NAD synthase H9K48_12505 PF00571 CBS domain H9K48_12505 PF00478 IMP dehydrogenase / GMP reductase domain H9K48_12510 PF02601 Exonuclease VII, large subunit H9K48_12510 PF13742 OB-fold nucleic acid binding domain H9K48_12525 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal H9K48_12525 PF01926 50S ribosome-binding GTPase H9K48_12530 PF13360 PQQ-like domain H9K48_12535 PF09976 Tetratricopeptide repeat-like domain H9K48_12540 PF03129 Anticodon binding domain H9K48_12540 PF13393 Histidyl-tRNA synthetase H9K48_12545 PF04551 GcpE protein H9K48_12550 PF13464 Domain of unknown function (DUF4115) H9K48_12555 PF04055 Radical SAM superfamily H9K48_12560 PF00334 Nucleoside diphosphate kinase H9K48_12565 PF12404 Peptidase H9K48_12565 PF00883 Cytosol aminopeptidase family, catalytic domain H9K48_12570 PF04384 Iron-sulphur cluster assembly H9K48_12575 PF00111 2Fe-2S iron-sulfur cluster binding domain H9K48_12580 PF00012 Hsp70 protein H9K48_12585 PF07743 HSCB C-terminal oligomerisation domain H9K48_12585 PF00226 DnaJ domain H9K48_12590 PF01521 Iron-sulphur cluster biosynthesis H9K48_12595 PF01592 NifU-like N terminal domain H9K48_12600 PF00266 Aminotransferase class-V H9K48_12605 PF02082 Transcriptional regulator H9K48_12610 PF00588 SpoU rRNA Methylase family H9K48_12615 PF00459 Inositol monophosphatase family H9K48_12620 PF07549 SecD/SecF GG Motif H9K48_12620 PF02355 Protein export membrane protein H9K48_12625 PF02355 Protein export membrane protein H9K48_12625 PF13721 SecD export protein N-terminal TM region H9K48_12625 PF07549 SecD/SecF GG Motif H9K48_12630 PF02699 Preprotein translocase subunit H9K48_12635 PF01702 Queuine tRNA-ribosyltransferase H9K48_12640 PF02547 Queuosine biosynthesis protein H9K48_12650 PF00571 CBS domain H9K48_12655 PF00463 Isocitrate lyase family H9K48_12660 PF01274 Malate synthase H9K48_12665 PF03466 LysR substrate binding domain H9K48_12665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_12670 PF10417 C-terminal domain of 1-Cys peroxiredoxin H9K48_12670 PF00578 AhpC/TSA family H9K48_12675 PF03932 CutC family H9K48_12680 PF03976 Polyphosphate kinase 2 (PPK2) H9K48_12685 PF01895 PhoU domain H9K48_12690 PF00005 ABC transporter H9K48_12695 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_12700 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_12705 PF13089 Polyphosphate kinase N-terminal domain H9K48_12705 PF17941 Polyphosphate kinase C-terminal domain 1 H9K48_12705 PF13090 Polyphosphate kinase C-terminal domain 2 H9K48_12705 PF02503 Polyphosphate kinase middle domain H9K48_12710 PF02541 Ppx/GppA phosphatase family H9K48_12715 PF12849 PBP superfamily domain H9K48_12720 PF11808 Phosphate regulon sensor protein PhoR H9K48_12720 PF00512 His Kinase A (phospho-acceptor) domain H9K48_12720 PF00989 PAS fold H9K48_12720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_12725 PF00486 Transcriptional regulatory protein, C terminal H9K48_12725 PF00072 Response regulator receiver domain H9K48_12730 PF04381 Putative exonuclease, RdgC H9K48_12735 PF01136 Peptidase family U32 H9K48_12735 PF16325 Peptidase family U32 C-terminal domain H9K48_12740 PF00037 4Fe-4S binding domain H9K48_12750 PF03411 Penicillin-insensitive murein endopeptidase H9K48_12795 PF17871 AAA lid domain H9K48_12795 PF07724 AAA domain (Cdc48 subfamily) H9K48_12795 PF00004 ATPase family associated with various cellular activities (AAA) H9K48_12795 PF10431 C-terminal, D2-small domain, of ClpB protein H9K48_12795 PF02861 Clp amino terminal domain, pathogenicity island component H9K48_12800 PF02578 Multi-copper polyphenol oxidoreductase laccase H9K48_12805 PF01479 S4 domain H9K48_12805 PF00849 RNA pseudouridylate synthase H9K48_12810 PF13525 Outer membrane lipoprotein H9K48_12815 PF01464 Transglycosylase SLT domain H9K48_12815 PF00497 Bacterial extracellular solute-binding proteins, family 3 H9K48_12820 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein H9K48_12825 PF00800 Prephenate dehydratase H9K48_12825 PF01817 Chorismate mutase type II H9K48_12830 PF01931 Protein of unknown function DUF84 H9K48_12835 PF01371 Trp repressor protein H9K48_12840 PF01464 Transglycosylase SLT domain H9K48_12840 PF14718 Soluble lytic murein transglycosylase L domain H9K48_12845 PF00005 ABC transporter H9K48_12845 PF12848 ABC transporter H9K48_12850 PF07238 PilZ domain H9K48_12855 PF04225 Opacity-associated protein A LysM-like domain H9K48_12855 PF01551 Peptidase family M23 H9K48_12860 PF01817 Chorismate mutase type II H9K48_12860 PF02153 Prephenate dehydrogenase H9K48_12865 PF00793 DAHP synthetase I family H9K48_12870 PF00933 Glycosyl hydrolase family 3 N terminal domain H9K48_12875 PF03702 Anhydro-N-acetylmuramic acid kinase H9K48_12880 PF13580 SIS domain H9K48_12895 PF02554 Carbon starvation protein CstA H9K48_12900 PF07694 5TMR of 5TMR-LYT H9K48_12900 PF06580 Histidine kinase H9K48_12905 PF04397 LytTr DNA-binding domain H9K48_12905 PF00072 Response regulator receiver domain H9K48_12910 PF02401 LytB protein H9K48_12915 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase H9K48_12920 PF01252 Signal peptidase (SPase) II H9K48_12925 PF06827 Zinc finger found in FPG and IleRS H9K48_12925 PF00133 tRNA synthetases class I (I, L, M and V) H9K48_12925 PF08264 Anticodon-binding domain of tRNA H9K48_12930 PF06574 FAD synthetase H9K48_12930 PF01687 Riboflavin kinase H9K48_12935 PF03023 Lipid II flippase MurJ H9K48_12940 PF01649 Ribosomal protein S20 H9K48_12945 PF01022 Bacterial regulatory protein, arsR family H9K48_12950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_12950 PF03466 LysR substrate binding domain H9K48_12955 PF02690 Na+/Pi-cotransporter H9K48_12965 PF00303 Thymidylate synthase H9K48_12970 PF01790 Prolipoprotein diacylglyceryl transferase H9K48_12975 PF01925 Sulfite exporter TauE/SafE H9K48_12980 PF05524 PEP-utilising enzyme, N-terminal H9K48_12980 PF00391 PEP-utilising enzyme, mobile domain H9K48_12980 PF02896 PEP-utilising enzyme, TIM barrel domain H9K48_12980 PF01590 GAF domain H9K48_12985 PF00293 NUDIX domain H9K48_12990 PF02976 DNA mismatch repair enzyme MutH H9K48_13000 PF00248 Aldo/keto reductase family H9K48_13010 PF02954 Bacterial regulatory protein, Fis family H9K48_13010 PF00072 Response regulator receiver domain H9K48_13010 PF00158 Sigma-54 interaction domain H9K48_13015 PF00152 tRNA synthetases class II (D, K and N) H9K48_13015 PF01336 OB-fold nucleic acid binding domain H9K48_13025 PF01368 DHH family H9K48_13025 PF02272 DHHA1 domain H9K48_13025 PF17768 RecJ OB domain H9K48_13030 PF10411 Disulfide bond isomerase protein N-terminus H9K48_13030 PF13098 Thioredoxin-like domain H9K48_13035 PF02899 Phage integrase, N-terminal SAM-like domain H9K48_13035 PF00589 Phage integrase family H9K48_13040 PF00258 Flavodoxin H9K48_13045 PF05525 Branched-chain amino acid transport protein H9K48_13050 PF05175 Methyltransferase small domain H9K48_13055 PF00270 DEAD/DEAH box helicase H9K48_13055 PF00271 Helicase conserved C-terminal domain H9K48_13060 PF03883 Peroxide stress protein YaaA H9K48_13065 PF01235 Sodium:alanine symporter family H9K48_13080 PF03167 Uracil DNA glycosylase superfamily H9K48_13085 PF01261 Xylose isomerase-like TIM barrel H9K48_13090 PF01228 Glycine radical H9K48_13095 PF14821 Threonine synthase N terminus H9K48_13095 PF00291 Pyridoxal-phosphate dependent enzyme H9K48_13100 PF08544 GHMP kinases C terminal H9K48_13100 PF00288 GHMP kinases N terminal domain H9K48_13105 PF13840 ACT domain H9K48_13105 PF01842 ACT domain H9K48_13105 PF00696 Amino acid kinase family H9K48_13105 PF00742 Homoserine dehydrogenase H9K48_13105 PF03447 Homoserine dehydrogenase, NAD binding domain H9K48_13115 PF03737 Aldolase/RraA H9K48_13125 PF00072 Response regulator receiver domain H9K48_13125 PF00486 Transcriptional regulatory protein, C terminal H9K48_13135 PF00072 Response regulator receiver domain H9K48_13135 PF00512 His Kinase A (phospho-acceptor) domain H9K48_13135 PF01627 Hpt domain H9K48_13135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_13135 PF00989 PAS fold H9K48_13135 PF18415 Histidine kinase receptor ArcB trans-membrane domain H9K48_13140 PF00360 Phytochrome region H9K48_13140 PF00990 Diguanylate cyclase, GGDEF domain H9K48_13140 PF01590 GAF domain H9K48_13140 PF00563 EAL domain H9K48_13145 PF04055 Radical SAM superfamily H9K48_13145 PF16199 Radical_SAM C-terminal domain H9K48_13150 PF01493 GXGXG motif H9K48_13150 PF00310 Glutamine amidotransferases class-II H9K48_13150 PF04898 Glutamate synthase central domain H9K48_13150 PF01645 Conserved region in glutamate synthase H9K48_13155 PF07992 Pyridine nucleotide-disulphide oxidoreductase H9K48_13155 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster H9K48_13160 PF00310 Glutamine amidotransferases class-II H9K48_13160 PF04898 Glutamate synthase central domain H9K48_13160 PF01645 Conserved region in glutamate synthase H9K48_13160 PF01493 GXGXG motif H9K48_13165 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster H9K48_13165 PF07992 Pyridine nucleotide-disulphide oxidoreductase H9K48_13175 PF01048 Phosphorylase superfamily H9K48_13180 PF03186 CobD/Cbib protein H9K48_13180 PF17113 Regulatory signalling modulator protein AmpE H9K48_13185 PF01497 Periplasmic binding protein H9K48_13190 PF03458 UPF0126 domain H9K48_13195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_13195 PF03466 LysR substrate binding domain H9K48_13200 PF01925 Sulfite exporter TauE/SafE H9K48_13215 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain H9K48_13215 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain H9K48_13215 PF02142 MGS-like domain H9K48_13220 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain H9K48_13220 PF00117 Glutamine amidotransferase class-I H9K48_13225 PF05173 Dihydrodipicolinate reductase, C-terminus H9K48_13225 PF01113 Dihydrodipicolinate reductase, N-terminus H9K48_13230 PF00293 NUDIX domain H9K48_13235 PF07516 SecA Wing and Scaffold domain H9K48_13235 PF07517 SecA DEAD-like domain H9K48_13235 PF01043 SecA preprotein cross-linking domain H9K48_13235 PF02810 SEC-C motif H9K48_13245 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase H9K48_13250 PF12327 FtsZ family, C-terminal domain H9K48_13250 PF00091 Tubulin/FtsZ family, GTPase domain H9K48_13255 PF02491 SHS2 domain inserted in FTSA H9K48_13260 PF08478 POTRA domain, FtsQ-type H9K48_13260 PF03799 Cell division protein FtsQ H9K48_13265 PF08245 Mur ligase middle domain H9K48_13265 PF02875 Mur ligase family, glutamate ligase domain H9K48_13265 PF01225 Mur ligase family, catalytic domain H9K48_13270 PF04101 Glycosyltransferase family 28 C-terminal domain H9K48_13270 PF03033 Glycosyltransferase family 28 N-terminal domain H9K48_13275 PF01098 Cell cycle protein H9K48_13280 PF02875 Mur ligase family, glutamate ligase domain H9K48_13280 PF08245 Mur ligase middle domain H9K48_13285 PF00953 Glycosyl transferase family 4 H9K48_13285 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 H9K48_13290 PF02875 Mur ligase family, glutamate ligase domain H9K48_13290 PF08245 Mur ligase middle domain H9K48_13290 PF01225 Mur ligase family, catalytic domain H9K48_13295 PF01225 Mur ligase family, catalytic domain H9K48_13295 PF02875 Mur ligase family, glutamate ligase domain H9K48_13295 PF08245 Mur ligase middle domain H9K48_13300 PF03717 Penicillin-binding Protein dimerisation domain H9K48_13300 PF00905 Penicillin binding protein transpeptidase domain H9K48_13305 PF04999 Cell division protein FtsL H9K48_13310 PF01795 MraW methylase family H9K48_13320 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases H9K48_13325 PF04348 LppC putative lipoprotein H9K48_13330 PF02021 Uncharacterised protein family UPF0102 H9K48_13335 PF13580 SIS domain H9K48_13340 PF04972 BON domain H9K48_13345 PF04386 Stringent starvation protein B H9K48_13350 PF00043 Glutathione S-transferase, C-terminal domain H9K48_13350 PF02798 Glutathione S-transferase, N-terminal domain H9K48_13355 PF02167 Cytochrome C1 family H9K48_13360 PF00032 Cytochrome b(C-terminal)/b6/petD H9K48_13360 PF00033 Cytochrome b/b6/petB H9K48_13365 PF00355 Rieske [2Fe-2S] domain H9K48_13365 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal H9K48_13370 PF00380 Ribosomal protein S9/S16 H9K48_13375 PF00572 Ribosomal protein L13 H9K48_13380 PF03969 AFG1-like ATPase H9K48_13385 PF06295 Protein of unknown function (DUF1043) H9K48_13390 PF00595 PDZ domain H9K48_13395 PF13180 PDZ domain H9K48_13400 PF03989 DNA gyrase C-terminal domain, beta-propeller H9K48_13400 PF00521 DNA gyrase/topoisomerase IV, subunit A H9K48_13405 PF01751 Toprim domain H9K48_13405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_13405 PF00986 DNA gyrase B subunit, carboxyl terminus H9K48_13405 PF00204 DNA gyrase B H9K48_13410 PF05728 Uncharacterised protein family (UPF0227) H9K48_13415 PF00149 Calcineurin-like phosphoesterase H9K48_13420 PF06853 Protein of unknown function (DUF1249) H9K48_13425 PF00293 NUDIX domain H9K48_13430 PF02321 Outer membrane efflux protein H9K48_13435 PF01467 Cytidylyltransferase-like H9K48_13435 PF00294 pfkB family carbohydrate kinase H9K48_13440 PF08335 GlnD PII-uridylyltransferase H9K48_13440 PF03710 Glutamate-ammonia ligase adenylyltransferase H9K48_13445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9K48_13445 PF00672 HAMP domain H9K48_13455 PF01928 CYTH domain H9K48_13460 PF01865 Protein of unknown function DUF47 H9K48_13465 PF01384 Phosphate transporter family H9K48_13470 PF08239 Bacterial SH3 domain H9K48_13480 PF13401 AAA domain H9K48_13480 PF01471 Putative peptidoglycan binding domain H9K48_13485 PF01966 HD domain H9K48_13485 PF01743 Poly A polymerase head domain H9K48_13485 PF12627 Probable RNA and SrmB- binding site of polymerase A H9K48_13490 PF02673 Bacitracin resistance protein BacA H9K48_13495 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) H9K48_13500 PF02152 Dihydroneopterin aldolase H9K48_13505 PF02660 Glycerol-3-phosphate acyltransferase H9K48_13510 PF12697 Alpha/beta hydrolase family H9K48_13515 PF00814 Glycoprotease family H9K48_13520 PF01165 Ribosomal protein S21 H9K48_13525 PF09424 Yqey-like protein H9K48_13530 PF08275 DNA primase catalytic core, N-terminal domain H9K48_13530 PF08278 DNA primase DnaG DnaB-binding H9K48_13530 PF01807 CHC2 zinc finger H9K48_13530 PF10410 DnaB-helicase binding domain of primase H9K48_13535 PF04546 Sigma-70, non-essential region H9K48_13535 PF03979 Sigma-70 factor, region 1.1 H9K48_13535 PF00140 Sigma-70 factor, region 1.2 H9K48_13535 PF04542 Sigma-70 region 2 H9K48_13535 PF04539 Sigma-70 region 3 H9K48_13535 PF04545 Sigma-70, region 4 H9K48_13550 PF13657 HipA N-terminal domain H9K48_13550 PF07804 HipA-like C-terminal domain H9K48_13570 PF00580 UvrD/REP helicase N-terminal domain H9K48_13570 PF13361 UvrD-like helicase C-terminal domain H9K48_13600 PF13657 HipA N-terminal domain H9K48_13600 PF07804 HipA-like C-terminal domain H9K48_13610 PF07693 KAP family P-loop domain H9K48_13635 PF03180 NLPA lipoprotein H9K48_13665 PF02378 Phosphotransferase system, EIIC H9K48_13665 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit H9K48_13665 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 H9K48_13670 PF01232 Mannitol dehydrogenase Rossmann domain H9K48_13670 PF08125 Mannitol dehydrogenase C-terminal domain H9K48_13675 PF05068 Mannitol repressor H9K48_13680 PF13419 Haloacid dehalogenase-like hydrolase H9K48_13685 PF00672 HAMP domain H9K48_13685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_13685 PF00512 His Kinase A (phospho-acceptor) domain H9K48_13690 PF00072 Response regulator receiver domain H9K48_13690 PF00486 Transcriptional regulatory protein, C terminal H9K48_13700 PF01380 SIS domain H9K48_13705 PF00455 DeoR C terminal sensor domain H9K48_13705 PF08220 DeoR-like helix-turn-helix domain H9K48_13710 PF00224 Pyruvate kinase, barrel domain H9K48_13710 PF02887 Pyruvate kinase, alpha/beta domain H9K48_13720 PF00990 Diguanylate cyclase, GGDEF domain H9K48_13725 PF10369 Small subunit of acetolactate synthase H9K48_13730 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain H9K48_13730 PF00205 Thiamine pyrophosphate enzyme, central domain H9K48_13730 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain H9K48_13735 PF00501 AMP-binding enzyme H9K48_13740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_13740 PF03466 LysR substrate binding domain H9K48_13750 PF01569 PAP2 superfamily H9K48_13760 PF08502 LeuA allosteric (dimerisation) domain H9K48_13760 PF00682 HMGL-like H9K48_13765 PF00180 Isocitrate/isopropylmalate dehydrogenase H9K48_13770 PF00330 Aconitase family (aconitate hydratase) H9K48_13775 PF00694 Aconitase C-terminal domain H9K48_13785 PF00226 DnaJ domain H9K48_13785 PF05099 Tellurite resistance protein TerB H9K48_13790 PF04453 LPS transport system D H9K48_13790 PF03968 OstA-like protein H9K48_13795 PF09312 SurA N-terminal domain H9K48_13800 PF04166 Pyridoxal phosphate biosynthetic protein PdxA H9K48_13805 PF00398 Ribosomal RNA adenine dimethylase H9K48_13810 PF04379 ApaG domain H9K48_13815 PF00149 Calcineurin-like phosphoesterase H9K48_13820 PF00186 Dihydrofolate reductase H9K48_13825 PF12821 Threonine/Serine exporter, ThrE H9K48_13830 PF06738 Putative threonine/serine exporter H9K48_13835 PF01926 50S ribosome-binding GTPase H9K48_13835 PF01018 GTP1/OBG H9K48_13840 PF01016 Ribosomal L27 protein H9K48_13845 PF00829 Ribosomal prokaryotic L21 protein H9K48_13850 PF00348 Polyprenyl synthetase H9K48_13860 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain H9K48_13860 PF00056 lactate/malate dehydrogenase, NAD binding domain H9K48_13865 PF02863 Arginine repressor, C-terminal domain H9K48_13865 PF01316 Arginine repressor, DNA binding domain H9K48_13870 PF16868 NMT1-like family H9K48_13885 PF00005 ABC transporter H9K48_13890 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_13900 PF02441 Flavoprotein H9K48_13905 PF08245 Mur ligase middle domain H9K48_13905 PF02875 Mur ligase family, glutamate ligase domain H9K48_13905 PF01225 Mur ligase family, catalytic domain H9K48_13910 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain H9K48_13915 PF00719 Inorganic pyrophosphatase H9K48_13925 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like H9K48_13930 PF04357 TamB, inner membrane protein subunit of TAM complex H9K48_13935 PF01103 Surface antigen H9K48_13935 PF17243 POTRA domain TamA domain 1 H9K48_13940 PF01625 Peptide methionine sulfoxide reductase H9K48_13945 PF06526 Protein of unknown function (DUF1107) H9K48_13950 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) H9K48_13955 PF10795 Protein of unknown function (DUF2607) H9K48_13965 PF00005 ABC transporter H9K48_13990 PF03600 Citrate transporter H9K48_13990 PF02080 TrkA-C domain H9K48_13995 PF00009 Elongation factor Tu GTP binding domain H9K48_14000 PF01507 Phosphoadenosine phosphosulfate reductase family H9K48_14005 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases H9K48_14005 PF10414 Sirohaem synthase dimerisation region H9K48_14005 PF14824 Sirohaem biosynthesis protein central H9K48_14010 PF00149 Calcineurin-like phosphoesterase H9K48_14010 PF02872 5'-nucleotidase, C-terminal domain H9K48_14020 PF00270 DEAD/DEAH box helicase H9K48_14020 PF03880 DbpA RNA binding domain H9K48_14020 PF00271 Helicase conserved C-terminal domain H9K48_14025 PF13673 Acetyltransferase (GNAT) domain H9K48_14035 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase H9K48_14035 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase H9K48_14045 PF01196 Ribosomal protein L17 H9K48_14050 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain H9K48_14050 PF01000 RNA polymerase Rpb3/RpoA insert domain H9K48_14050 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain H9K48_14055 PF00163 Ribosomal protein S4/S9 N-terminal domain H9K48_14055 PF01479 S4 domain H9K48_14060 PF00411 Ribosomal protein S11 H9K48_14065 PF00416 Ribosomal protein S13/S18 H9K48_14070 PF00444 Ribosomal protein L36 H9K48_14075 PF00344 SecY translocase H9K48_14080 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A H9K48_14085 PF00327 Ribosomal protein L30p/L7e H9K48_14090 PF00333 Ribosomal protein S5, N-terminal domain H9K48_14090 PF03719 Ribosomal protein S5, C-terminal domain H9K48_14095 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast H9K48_14100 PF00347 Ribosomal protein L6 H9K48_14105 PF00410 Ribosomal protein S8 H9K48_14110 PF00253 Ribosomal protein S14p/S29e H9K48_14115 PF00673 ribosomal L5P family C-terminus H9K48_14115 PF00281 Ribosomal protein L5 H9K48_14120 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 H9K48_14120 PF00467 KOW motif H9K48_14125 PF00238 Ribosomal protein L14p/L23e H9K48_14130 PF00366 Ribosomal protein S17 H9K48_14135 PF00831 Ribosomal L29 protein H9K48_14140 PF00252 Ribosomal protein L16p/L10e H9K48_14145 PF07650 KH domain H9K48_14145 PF00189 Ribosomal protein S3, C-terminal domain H9K48_14150 PF00237 Ribosomal protein L22p/L17e H9K48_14155 PF00203 Ribosomal protein S19 H9K48_14160 PF00181 Ribosomal Proteins L2, RNA binding domain H9K48_14160 PF03947 Ribosomal Proteins L2, C-terminal domain H9K48_14165 PF00276 Ribosomal protein L23 H9K48_14170 PF00573 Ribosomal protein L4/L1 family H9K48_14175 PF00297 Ribosomal protein L3 H9K48_14180 PF00338 Ribosomal protein S10p/S20e H9K48_14185 PF01197 Ribosomal protein L31 H9K48_14190 PF18319 PriA DNA helicase Cys-rich region (CRR) domain H9K48_14190 PF18074 Primosomal protein N C-terminal domain H9K48_14190 PF17764 3′ DNA-binding domain (3′BD) H9K48_14190 PF00270 DEAD/DEAH box helicase H9K48_14190 PF00271 Helicase conserved C-terminal domain H9K48_14195 PF00356 Bacterial regulatory proteins, lacI family H9K48_14205 PF00227 Proteasome subunit H9K48_14210 PF00004 ATPase family associated with various cellular activities (AAA) H9K48_14210 PF07724 AAA domain (Cdc48 subfamily) H9K48_14215 PF01040 UbiA prenyltransferase family H9K48_14220 PF03737 Aldolase/RraA H9K48_14225 PF06005 Cell division protein ZapB H9K48_14230 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded H9K48_14235 PF00455 DeoR C terminal sensor domain H9K48_14235 PF08220 DeoR-like helix-turn-helix domain H9K48_14255 PF00121 Triosephosphate isomerase H9K48_14260 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain H9K48_14260 PF00753 Metallo-beta-lactamase superfamily H9K48_14260 PF10996 Beta-Casp domain H9K48_14270 PF01370 NAD dependent epimerase/dehydratase family H9K48_14275 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain H9K48_14275 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain H9K48_14275 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain H9K48_14280 PF00953 Glycosyl transferase family 4 H9K48_14290 PF00132 Bacterial transferase hexapeptide (six repeats) H9K48_14295 PF00534 Glycosyl transferases group 1 H9K48_14300 PF00535 Glycosyl transferase family 2 H9K48_14325 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase H9K48_14330 PF04321 RmlD substrate binding domain H9K48_14335 PF00483 Nucleotidyl transferase H9K48_14340 PF16363 GDP-mannose 4,6 dehydratase H9K48_14375 PF06082 Exopolysaccharide biosynthesis protein YbjH H9K48_14380 PF01370 NAD dependent epimerase/dehydratase family H9K48_14385 PF03279 Bacterial lipid A biosynthesis acyltransferase H9K48_14390 PF01075 Glycosyltransferase family 9 (heptosyltransferase) H9K48_14395 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) H9K48_14420 PF00795 Carbon-nitrogen hydrolase H9K48_14425 PF00202 Aminotransferase class-III H9K48_14435 PF02348 Cytidylyltransferase H9K48_14435 PF13472 GDSL-like Lipase/Acylhydrolase family H9K48_14440 PF00483 Nucleotidyl transferase H9K48_14450 PF03102 NeuB family H9K48_14450 PF08666 SAF domain H9K48_14455 PF02350 UDP-N-acetylglucosamine 2-epimerase H9K48_14460 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family H9K48_14465 PF02719 Polysaccharide biosynthesis protein H9K48_14475 PF01219 Prokaryotic diacylglycerol kinase H9K48_14480 PF01075 Glycosyltransferase family 9 (heptosyltransferase) H9K48_14485 PF00535 Glycosyl transferase family 2 H9K48_14490 PF00535 Glycosyl transferase family 2 H9K48_14495 PF05686 Glycosyl transferase family 90 H9K48_14500 PF01467 Cytidylyltransferase-like H9K48_14505 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain H9K48_14505 PF06827 Zinc finger found in FPG and IleRS H9K48_14505 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain H9K48_14515 PF00884 Sulfatase H9K48_14520 PF00471 Ribosomal protein L33 H9K48_14525 PF00830 Ribosomal L28 family H9K48_14530 PF04002 RadC-like JAB domain H9K48_14535 PF00672 HAMP domain H9K48_14535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9K48_14535 PF17200 Single Cache domain 2 H9K48_14540 PF04127 DNA / pantothenate metabolism flavoprotein H9K48_14540 PF02441 Flavoprotein H9K48_14545 PF00440 Bacterial regulatory proteins, tetR family H9K48_14550 PF03279 Bacterial lipid A biosynthesis acyltransferase H9K48_14555 PF00156 Phosphoribosyl transferase domain H9K48_14560 PF01138 3' exoribonuclease family, domain 1 H9K48_14560 PF03725 3' exoribonuclease family, domain 2 H9K48_14565 PF08340 Domain of unknown function (DUF1732) H9K48_14565 PF03755 YicC-like family, N-terminal region H9K48_14575 PF00005 ABC transporter H9K48_14575 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H9K48_14580 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H9K48_14580 PF00005 ABC transporter H9K48_14585 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle H9K48_14590 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_14590 PF12911 N-terminal TM domain of oligopeptide transport permease C H9K48_14595 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_14600 PF00593 TonB dependent receptor H9K48_14600 PF07715 TonB-dependent Receptor Plug Domain H9K48_14615 PF01618 MotA/TolQ/ExbB proton channel family H9K48_14620 PF02472 Biopolymer transport protein ExbD/TolR H9K48_14635 PF00625 Guanylate kinase H9K48_14640 PF01192 RNA polymerase Rpb6 H9K48_14645 PF13291 ACT domain H9K48_14645 PF04607 Region found in RelA / SpoT proteins H9K48_14645 PF02824 TGS domain H9K48_14650 PF12105 SpoU, rRNA methylase, C-terminal H9K48_14650 PF00588 SpoU rRNA Methylase family H9K48_14655 PF00271 Helicase conserved C-terminal domain H9K48_14655 PF17191 RecG wedge domain H9K48_14655 PF00270 DEAD/DEAH box helicase H9K48_14660 PF00860 Permease family H9K48_14665 PF00672 HAMP domain H9K48_14665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_14665 PF00512 His Kinase A (phospho-acceptor) domain H9K48_14670 PF00072 Response regulator receiver domain H9K48_14670 PF00486 Transcriptional regulatory protein, C terminal H9K48_14680 PF01272 Transcription elongation factor, GreA/GreB, C-term H9K48_14680 PF03449 Transcription elongation factor, N-terminal H9K48_14690 PF00575 S1 RNA binding domain H9K48_14690 PF09371 Tex-like protein N-terminal domain H9K48_14690 PF16921 Tex protein YqgF-like domain H9K48_14690 PF17674 HHH domain H9K48_14700 PF00561 alpha/beta hydrolase fold H9K48_14705 PF00156 Phosphoribosyl transferase domain H9K48_14710 PF01521 Iron-sulphur cluster biosynthesis H9K48_14710 PF01106 NifU-like domain H9K48_14715 PF00293 NUDIX domain H9K48_14720 PF00459 Inositol monophosphatase family H9K48_14725 PF01203 Type II secretion system (T2SS), protein N H9K48_14730 PF04612 Type II secretion system (T2SS), protein M H9K48_14735 PF12693 GspL periplasmic domain H9K48_14735 PF05134 Type II secretion system (T2SS), protein L H9K48_14740 PF03934 Type II secretion system (T2SS), protein K H9K48_14745 PF07963 Prokaryotic N-terminal methylation motif H9K48_14745 PF11612 Type II secretion system (T2SS), protein J H9K48_14750 PF07963 Prokaryotic N-terminal methylation motif H9K48_14750 PF02501 Type II secretion system (T2SS), protein I H9K48_14755 PF12019 Type II transport protein GspH H9K48_14760 PF08334 Type II secretion system (T2SS), protein G H9K48_14760 PF07963 Prokaryotic N-terminal methylation motif H9K48_14765 PF00482 Type II secretion system (T2SS), protein F H9K48_14770 PF00437 Type II/IV secretion system protein H9K48_14775 PF00263 Bacterial type II and III secretion system protein H9K48_14775 PF03958 Bacterial type II/III secretion system short domain H9K48_14780 PF11356 Type II secretion system protein C H9K48_14785 PF01479 S4 domain H9K48_14790 PF01430 Hsp33 protein H9K48_14795 PF01293 Phosphoenolpyruvate carboxykinase H9K48_14805 PF09500 Putative thioesterase (yiiD_Cterm) H9K48_14805 PF00583 Acetyltransferase (GNAT) family H9K48_14810 PF02580 D-Tyr-tRNA(Tyr) deacylase H9K48_14815 PF03631 Virulence factor BrkB H9K48_14830 PF00679 Elongation factor G C-terminus H9K48_14830 PF00009 Elongation factor Tu GTP binding domain H9K48_14830 PF03144 Elongation factor Tu domain 2 H9K48_14835 PF03951 Glutamine synthetase, beta-Grasp domain H9K48_14835 PF00120 Glutamine synthetase, catalytic domain H9K48_14845 PF00989 PAS fold H9K48_14845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_14845 PF00512 His Kinase A (phospho-acceptor) domain H9K48_14850 PF02954 Bacterial regulatory protein, Fis family H9K48_14850 PF00072 Response regulator receiver domain H9K48_14850 PF00158 Sigma-54 interaction domain H9K48_14855 PF00990 Diguanylate cyclase, GGDEF domain H9K48_14855 PF03707 Bacterial signalling protein N terminal repeat H9K48_14855 PF00563 EAL domain H9K48_14860 PF00962 Adenosine/AMP deaminase H9K48_14865 PF06969 HemN C-terminal domain H9K48_14865 PF04055 Radical SAM superfamily H9K48_14870 PF10675 Protein of unknown function (DUF2489) H9K48_14875 PF04220 Der GTPase activator (YihI) H9K48_14885 PF00034 Cytochrome c H9K48_14890 PF01926 50S ribosome-binding GTPase H9K48_14895 PF01612 3'-5' exonuclease H9K48_14895 PF00476 DNA polymerase family A H9K48_14895 PF01367 5'-3' exonuclease, C-terminal SAM fold H9K48_14895 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain H9K48_14910 PF00490 Delta-aminolevulinic acid dehydratase H9K48_14915 PF01026 TatD related DNase H9K48_14920 PF00902 Sec-independent protein translocase protein (TatC) H9K48_14925 PF02416 mttA/Hcf106 family H9K48_14930 PF02416 mttA/Hcf106 family H9K48_14935 PF03109 ABC1 family H9K48_14940 PF02036 SCP-2 sterol transfer family H9K48_14945 PF01209 ubiE/COQ5 methyltransferase family H9K48_14950 PF02646 RmuC family H9K48_14960 PF03707 Bacterial signalling protein N terminal repeat H9K48_14960 PF00990 Diguanylate cyclase, GGDEF domain H9K48_14960 PF00563 EAL domain H9K48_14965 PF01594 AI-2E family transporter H9K48_15015 PF04972 BON domain H9K48_15020 PF01590 GAF domain H9K48_15020 PF00158 Sigma-54 interaction domain H9K48_15020 PF02954 Bacterial regulatory protein, Fis family H9K48_15030 PF10625 Universal stress protein B (UspB) H9K48_15035 PF00210 Ferritin-like domain H9K48_15040 PF00582 Universal stress protein family H9K48_15045 PF00892 EamA-like transporter family H9K48_15055 PF04445 Putative SAM-dependent methyltransferase H9K48_15060 PF00563 EAL domain H9K48_15060 PF08448 PAS fold H9K48_15060 PF00990 Diguanylate cyclase, GGDEF domain H9K48_15065 PF01037 Lrp/AsnC ligand binding domain H9K48_15070 PF01432 Peptidase family M3 H9K48_15075 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ H9K48_15080 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain H9K48_15080 PF07992 Pyridine nucleotide-disulphide oxidoreductase H9K48_15085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_15085 PF03466 LysR substrate binding domain H9K48_15090 PF01048 Phosphorylase superfamily H9K48_15095 PF01081 KDPG and KHG aldolase H9K48_15100 PF02447 GntP family permease H9K48_15105 PF01202 Shikimate kinase H9K48_15110 PF00920 Dehydratase family H9K48_15115 PF00893 Small Multidrug Resistance protein H9K48_15120 PF00893 Small Multidrug Resistance protein H9K48_15125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_15125 PF03466 LysR substrate binding domain H9K48_15130 PF00356 Bacterial regulatory proteins, lacI family H9K48_15130 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family H9K48_15135 PF00069 Protein kinase domain H9K48_15165 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_15165 PF12911 N-terminal TM domain of oligopeptide transport permease C H9K48_15170 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_15175 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle H9K48_15180 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H9K48_15180 PF00005 ABC transporter H9K48_15185 PF13419 Haloacid dehalogenase-like hydrolase H9K48_15215 PF13442 Cytochrome C oxidase, cbb3-type, subunit III H9K48_15220 PF13361 UvrD-like helicase C-terminal domain H9K48_15220 PF00580 UvrD/REP helicase N-terminal domain H9K48_15225 PF16295 Tetracyclin repressor-like, C-terminal domain H9K48_15225 PF00440 Bacterial regulatory proteins, tetR family H9K48_15230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H9K48_15235 PF00873 AcrB/AcrD/AcrF family H9K48_15240 PF04380 Membrane fusogenic activity H9K48_15245 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain H9K48_15245 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain H9K48_15250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_15250 PF03466 LysR substrate binding domain H9K48_15285 PF00132 Bacterial transferase hexapeptide (six repeats) H9K48_15290 PF07369 Protein of unknown function (DUF1488) H9K48_15295 PF08501 Shikimate dehydrogenase substrate binding domain H9K48_15295 PF18317 Shikimate 5'-dehydrogenase C-terminal domain H9K48_15295 PF01488 Shikimate / quinate 5-dehydrogenase H9K48_15300 PF01218 Coproporphyrinogen III oxidase H9K48_15305 PF01300 Telomere recombination H9K48_15310 PF00731 AIR carboxylase H9K48_15315 PF02222 ATP-grasp domain H9K48_15315 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain H9K48_15320 PF01396 Topoisomerase DNA binding C4 zinc finger H9K48_15325 PF04361 Protein of unknown function (DUF494) H9K48_15330 PF17782 DprA winged helix domain H9K48_15330 PF02481 DNA recombination-mediator protein A H9K48_15340 PF01327 Polypeptide deformylase H9K48_15345 PF02911 Formyl transferase, C-terminal domain H9K48_15345 PF00551 Formyl transferase H9K48_15350 PF01029 NusB family H9K48_15350 PF01189 16S rRNA methyltransferase RsmB/F H9K48_15355 PF02254 TrkA-N domain H9K48_15355 PF02080 TrkA-C domain H9K48_15360 PF02386 Cation transport protein H9K48_15370 PF03006 Haemolysin-III related H9K48_15375 PF07070 SpoOM protein H9K48_15380 PF06288 Protein of unknown function (DUF1040) H9K48_15385 PF12801 4Fe-4S binding domain H9K48_15385 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase H9K48_15385 PF13746 4Fe-4S dicluster domain H9K48_15390 PF01636 Phosphotransferase enzyme family H9K48_15395 PF01323 DSBA-like thioredoxin domain H9K48_15400 PF01553 Acyltransferase H9K48_15410 PF01078 Magnesium chelatase, subunit ChlI H9K48_15410 PF13335 Magnesium chelatase, subunit ChlI C-terminal H9K48_15415 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain H9K48_15415 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain H9K48_15415 PF00205 Thiamine pyrophosphate enzyme, central domain H9K48_15425 PF01063 Amino-transferase class IV H9K48_15430 PF00920 Dehydratase family H9K48_15435 PF00291 Pyridoxal-phosphate dependent enzyme H9K48_15435 PF00585 C-terminal regulatory domain of Threonine dehydratase H9K48_15440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_15440 PF03466 LysR substrate binding domain H9K48_15445 PF07690 Major Facilitator Superfamily H9K48_15450 PF00497 Bacterial extracellular solute-binding proteins, family 3 H9K48_15455 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_15460 PF00132 Bacterial transferase hexapeptide (six repeats) H9K48_15460 PF12804 MobA-like NTP transferase domain H9K48_15465 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain H9K48_15465 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain H9K48_15470 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain H9K48_15470 PF02874 ATP synthase alpha/beta family, beta-barrel domain H9K48_15475 PF00231 ATP synthase H9K48_15480 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain H9K48_15480 PF00306 ATP synthase alpha/beta chain, C terminal domain H9K48_15480 PF02874 ATP synthase alpha/beta family, beta-barrel domain H9K48_15485 PF00213 ATP synthase delta (OSCP) subunit H9K48_15490 PF00430 ATP synthase B/B' CF(0) H9K48_15495 PF00137 ATP synthase subunit C H9K48_15500 PF00119 ATP synthase A chain H9K48_15505 PF03899 ATP synthase I chain H9K48_15510 PF17762 HTH domain found in ParB protein H9K48_15510 PF02195 ParB-like nuclease domain H9K48_15515 PF13614 AAA domain H9K48_15520 PF02527 rRNA small subunit methyltransferase G H9K48_15525 PF01134 Glucose inhibited division protein A H9K48_15525 PF13932 GidA associated domain H9K48_15530 PF00258 Flavodoxin H9K48_15535 PF01926 50S ribosome-binding GTPase H9K48_15535 PF12631 MnmE helical domain H9K48_15535 PF10396 GTP-binding protein TrmE N-terminus H9K48_15540 PF02096 60Kd inner membrane protein H9K48_15540 PF14849 YidC periplasmic domain H9K48_15545 PF01809 Putative membrane protein insertion efficiency factor H9K48_15550 PF00825 Ribonuclease P H9K48_15555 PF00468 Ribosomal protein L34 H9K48_15560 PF00005 ABC transporter H9K48_15565 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_15570 PF00497 Bacterial extracellular solute-binding proteins, family 3 H9K48_15575 PF01554 MatE H9K48_15580 PF12833 Helix-turn-helix domain H9K48_15585 PF00155 Aminotransferase class I and II H9K48_15590 PF18030 RimK PreATP-grasp domain H9K48_15590 PF08443 RimK-like ATP-grasp domain H9K48_15600 PF04076 Bacterial OB fold (BOF) protein H9K48_15605 PF07685 CobB/CobQ-like glutamine amidotransferase domain H9K48_15615 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_15620 PF03459 TOBE domain H9K48_15620 PF00005 ABC transporter H9K48_15630 PF00563 EAL domain H9K48_15630 PF01590 GAF domain H9K48_15630 PF00990 Diguanylate cyclase, GGDEF domain H9K48_15630 PF00360 Phytochrome region H9K48_15640 PF00990 Diguanylate cyclase, GGDEF domain H9K48_15655 PF01262 Alanine dehydrogenase/PNT, C-terminal domain H9K48_15655 PF05222 Alanine dehydrogenase/PNT, N-terminal domain H9K48_15655 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch H9K48_15660 PF02233 NAD(P) transhydrogenase beta subunit H9K48_15670 PF00072 Response regulator receiver domain H9K48_15670 PF00486 Transcriptional regulatory protein, C terminal H9K48_15685 PF03701 Uncharacterised protein family (UPF0181) H9K48_15690 PF00582 Universal stress protein family H9K48_15700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_15700 PF03466 LysR substrate binding domain H9K48_15730 PF03958 Bacterial type II/III secretion system short domain H9K48_15730 PF00263 Bacterial type II and III secretion system protein H9K48_15760 PF05840 Bacteriophage replication gene A protein (GPA) H9K48_15780 PF01253 Translation initiation factor SUI1 H9K48_15790 PF07478 D-ala D-ala ligase C-terminus H9K48_15790 PF01820 D-ala D-ala ligase N-terminus H9K48_15800 PF00583 Acetyltransferase (GNAT) family H9K48_15800 PF13380 CoA binding domain H9K48_15800 PF13607 Succinyl-CoA ligase like flavodoxin domain H9K48_15805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_15805 PF03466 LysR substrate binding domain H9K48_15810 PF07715 TonB-dependent Receptor Plug Domain H9K48_15810 PF04886 PT repeat H9K48_15810 PF00593 TonB dependent receptor H9K48_15815 PF16363 GDP-mannose 4,6 dehydratase H9K48_15820 PF13426 PAS domain H9K48_15820 PF08447 PAS fold H9K48_15820 PF08448 PAS fold H9K48_15820 PF00990 Diguanylate cyclase, GGDEF domain H9K48_15820 PF00563 EAL domain H9K48_15820 PF05231 MASE1 H9K48_15825 PF03746 LamB/YcsF family H9K48_15830 PF02682 Carboxyltransferase domain, subdomain C and D H9K48_15835 PF02626 Carboxyltransferase domain, subdomain A and B H9K48_15850 PF00005 ABC transporter H9K48_15855 PF13472 GDSL-like Lipase/Acylhydrolase family H9K48_15860 PF12241 Trans-2-enoyl-CoA reductase catalytic region H9K48_15860 PF07055 Enoyl reductase FAD binding domain H9K48_15860 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase H9K48_15865 PF00563 EAL domain H9K48_15865 PF00990 Diguanylate cyclase, GGDEF domain H9K48_15865 PF03707 Bacterial signalling protein N terminal repeat H9K48_15865 PF13188 PAS domain H9K48_15880 PF00226 DnaJ domain H9K48_15880 PF01556 DnaJ C terminal domain H9K48_15880 PF00684 DnaJ central domain H9K48_15905 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle H9K48_15905 PF12793 Sugar transport-related sRNA regulator N-term H9K48_15915 PF03061 Thioesterase superfamily H9K48_15930 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) H9K48_15935 PF12262 Bacterial virulence factor lipase N-terminal H9K48_15950 PF03741 Integral membrane protein TerC family H9K48_15955 PF00149 Calcineurin-like phosphoesterase H9K48_15955 PF02872 5'-nucleotidase, C-terminal domain H9K48_15960 PF11398 Protein of unknown function (DUF2813) H9K48_15965 PF06496 Protein of unknown function (DUF1097) H9K48_15970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_15970 PF03466 LysR substrate binding domain H9K48_15975 PF01226 Formate/nitrite transporter H9K48_15980 PF04264 YceI-like domain H9K48_15985 PF01292 Prokaryotic cytochrome b561 H9K48_16000 PF12792 CSS motif domain associated with EAL H9K48_16000 PF00563 EAL domain H9K48_16005 PF00271 Helicase conserved C-terminal domain H9K48_16005 PF00270 DEAD/DEAH box helicase H9K48_16010 PF04336 Acyl carrier protein phosphodiesterase H9K48_16015 PF00672 HAMP domain H9K48_16015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9K48_16020 PF13419 Haloacid dehalogenase-like hydrolase H9K48_16025 PF11849 Domain of unknown function (DUF3369) H9K48_16040 PF00294 pfkB family carbohydrate kinase H9K48_16045 PF01268 Formate--tetrahydrofolate ligase H9K48_16050 PF00483 Nucleotidyl transferase H9K48_16055 PF06483 Chitinase C H9K48_16055 PF00704 Glycosyl hydrolases family 18 H9K48_16060 PF12833 Helix-turn-helix domain H9K48_16060 PF06719 AraC-type transcriptional regulator N-terminus H9K48_16065 PF00465 Iron-containing alcohol dehydrogenase H9K48_16075 PF14532 Sigma-54 interaction domain H9K48_16075 PF00072 Response regulator receiver domain H9K48_16075 PF02954 Bacterial regulatory protein, Fis family H9K48_16080 PF00512 His Kinase A (phospho-acceptor) domain H9K48_16080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_16080 PF00672 HAMP domain H9K48_16090 PF07690 Major Facilitator Superfamily H9K48_16095 PF00224 Pyruvate kinase, barrel domain H9K48_16095 PF02887 Pyruvate kinase, alpha/beta domain H9K48_16100 PF00005 ABC transporter H9K48_16105 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_16110 PF00497 Bacterial extracellular solute-binding proteins, family 3 H9K48_16115 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_16120 PF00989 PAS fold H9K48_16120 PF00990 Diguanylate cyclase, GGDEF domain H9K48_16120 PF01590 GAF domain H9K48_16120 PF00563 EAL domain H9K48_16135 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family H9K48_16135 PF00356 Bacterial regulatory proteins, lacI family H9K48_16140 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 H9K48_16140 PF00381 PTS HPr component phosphorylation site H9K48_16145 PF00294 pfkB family carbohydrate kinase H9K48_16150 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit H9K48_16150 PF02378 Phosphotransferase system, EIIC H9K48_16160 PF00873 AcrB/AcrD/AcrF family H9K48_16180 PF01571 Aminomethyltransferase folate-binding domain H9K48_16180 PF08669 Glycine cleavage T-protein C-terminal barrel domain H9K48_16190 PF00464 Serine hydroxymethyltransferase H9K48_16195 PF01597 Glycine cleavage H-protein H9K48_16200 PF02347 Glycine cleavage system P-protein H9K48_16205 PF02810 SEC-C motif H9K48_16205 PF07517 SecA DEAD-like domain H9K48_16205 PF01043 SecA preprotein cross-linking domain H9K48_16205 PF07516 SecA Wing and Scaffold domain H9K48_16230 PF01039 Carboxyl transferase domain H9K48_16230 PF17848 Acetyl-coA carboxylase zinc finger domain H9K48_16235 PF03466 LysR substrate binding domain H9K48_16235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_16240 PF02811 PHP domain H9K48_16240 PF11490 DNA polymerase III polC-type N-terminus II H9K48_16240 PF00929 Exonuclease H9K48_16240 PF17657 Bacterial DNA polymerase III alpha subunit finger domain H9K48_16240 PF14579 Helix-hairpin-helix motif H9K48_16240 PF07733 Bacterial DNA polymerase III alpha NTPase domain H9K48_16245 PF00664 ABC transporter transmembrane region H9K48_16245 PF00005 ABC transporter H9K48_16265 PF02253 Phospholipase A1 H9K48_16275 PF09278 MerR, DNA binding H9K48_16275 PF00376 MerR family regulatory protein H9K48_16280 PF01327 Polypeptide deformylase H9K48_16310 PF03448 MgtE intracellular N domain H9K48_16310 PF00571 CBS domain H9K48_16310 PF01769 Divalent cation transporter H9K48_16330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H9K48_16335 PF00724 NADH:flavin oxidoreductase / NADH oxidase family H9K48_16345 PF01757 Acyltransferase family H9K48_16355 PF09722 Protein of unknown function (DUF2384) H9K48_16360 PF00141 Peroxidase H9K48_16365 PF13187 4Fe-4S dicluster domain H9K48_16365 PF01645 Conserved region in glutamate synthase H9K48_16375 PF12431 Transcriptional regulator H9K48_16375 PF00072 Response regulator receiver domain H9K48_16380 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain H9K48_16380 PF17203 Single cache domain 3 H9K48_16380 PF00989 PAS fold H9K48_16380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_16385 PF00939 Sodium:sulfate symporter transmembrane region H9K48_16390 PF00171 Aldehyde dehydrogenase family H9K48_16410 PF00892 EamA-like transporter family H9K48_16415 PF00893 Small Multidrug Resistance protein H9K48_16420 PF04151 Bacterial pre-peptidase C-terminal domain H9K48_16420 PF02868 Thermolysin metallopeptidase, alpha-helical domain H9K48_16420 PF01447 Thermolysin metallopeptidase, catalytic domain H9K48_16420 PF03413 Peptidase propeptide and YPEB domain H9K48_16420 PF07504 Fungalysin/Thermolysin Propeptide Motif H9K48_16430 PF01569 PAP2 superfamily H9K48_16440 PF00892 EamA-like transporter family H9K48_16455 PF00072 Response regulator receiver domain H9K48_16455 PF01584 CheW-like domain H9K48_16475 PF00072 Response regulator receiver domain H9K48_16475 PF00196 Bacterial regulatory proteins, luxR family H9K48_16485 PF00990 Diguanylate cyclase, GGDEF domain H9K48_16490 PF00196 Bacterial regulatory proteins, luxR family H9K48_16490 PF00072 Response regulator receiver domain H9K48_16495 PF00563 EAL domain H9K48_16495 PF00990 Diguanylate cyclase, GGDEF domain H9K48_16495 PF13188 PAS domain H9K48_16495 PF03707 Bacterial signalling protein N terminal repeat H9K48_16500 PF00072 Response regulator receiver domain H9K48_16500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_16500 PF09456 RcsC Alpha-Beta-Loop (ABL) H9K48_16500 PF00512 His Kinase A (phospho-acceptor) domain H9K48_16510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_16510 PF03466 LysR substrate binding domain H9K48_16515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_16515 PF03466 LysR substrate binding domain H9K48_16525 PF00691 OmpA family H9K48_16525 PF05736 OprF membrane domain H9K48_16560 PF00437 Type II/IV secretion system protein H9K48_16575 PF00263 Bacterial type II and III secretion system protein H9K48_16575 PF04972 BON domain H9K48_16575 PF13629 Pilus formation protein N terminal region H9K48_16595 PF03466 LysR substrate binding domain H9K48_16595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_16600 PF12833 Helix-turn-helix domain H9K48_16610 PF01752 Collagenase H9K48_16610 PF08453 Peptidase family M9 N-terminal H9K48_16610 PF04151 Bacterial pre-peptidase C-terminal domain H9K48_16620 PF01926 50S ribosome-binding GTPase H9K48_16625 PF00155 Aminotransferase class I and II H9K48_16630 PF00072 Response regulator receiver domain H9K48_16630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_16640 PF00583 Acetyltransferase (GNAT) family H9K48_16640 PF00814 Glycoprotease family H9K48_16650 PF03606 C4-dicarboxylate anaerobic carrier H9K48_16655 PF04011 LemA family H9K48_16660 PF01435 Peptidase family M48 H9K48_16675 PF18081 Fanconi anemia-associated nuclease SAP domain H9K48_16675 PF08774 VRR-NUC domain H9K48_16685 PF13186 Iron-sulfur cluster-binding domain H9K48_16685 PF04055 Radical SAM superfamily H9K48_16700 PF04076 Bacterial OB fold (BOF) protein H9K48_16705 PF00781 Diacylglycerol kinase catalytic domain H9K48_16710 PF03466 LysR substrate binding domain H9K48_16710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_16715 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region H9K48_16730 PF00092 von Willebrand factor type A domain H9K48_16745 PF07726 ATPase family associated with various cellular activities (AAA) H9K48_16745 PF17863 AAA lid domain H9K48_16750 PF04055 Radical SAM superfamily H9K48_16750 PF13186 Iron-sulfur cluster-binding domain H9K48_16755 PF00884 Sulfatase H9K48_16760 PF03466 LysR substrate binding domain H9K48_16760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_16770 PF00884 Sulfatase H9K48_16775 PF16385 Domain of unknown function H9K48_16775 PF00884 Sulfatase H9K48_16780 PF00072 Response regulator receiver domain H9K48_16780 PF00486 Transcriptional regulatory protein, C terminal H9K48_16795 PF01627 Hpt domain H9K48_16795 PF00512 His Kinase A (phospho-acceptor) domain H9K48_16795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_16795 PF00672 HAMP domain H9K48_16795 PF00072 Response regulator receiver domain H9K48_16800 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family H9K48_16805 PF02142 MGS-like domain H9K48_16810 PF12462 DNA helicase IV / RNA helicase N terminal H9K48_16810 PF00580 UvrD/REP helicase N-terminal domain H9K48_16810 PF13361 UvrD-like helicase C-terminal domain H9K48_16815 PF12805 FUSC-like inner membrane protein yccS H9K48_16845 PF00593 TonB dependent receptor H9K48_16845 PF07715 TonB-dependent Receptor Plug Domain H9K48_16855 PF13411 MerR HTH family regulatory protein H9K48_16860 PF00005 ABC transporter H9K48_16865 PF01032 FecCD transport family H9K48_16870 PF01032 FecCD transport family H9K48_16875 PF01497 Periplasmic binding protein H9K48_16895 PF04314 Copper chaperone PCu(A)C H9K48_16900 PF00012 Hsp70 protein H9K48_16915 PF00676 Dehydrogenase E1 component H9K48_16920 PF02780 Transketolase, C-terminal domain H9K48_16920 PF02779 Transketolase, pyrimidine binding domain H9K48_16925 PF00364 Biotin-requiring enzyme H9K48_16925 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) H9K48_16925 PF02817 e3 binding domain H9K48_16935 PF02798 Glutathione S-transferase, N-terminal domain H9K48_16935 PF00043 Glutathione S-transferase, C-terminal domain H9K48_16940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_16940 PF03466 LysR substrate binding domain H9K48_16950 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_16955 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_16960 PF00497 Bacterial extracellular solute-binding proteins, family 3 H9K48_16965 PF00005 ABC transporter H9K48_16970 PF03466 LysR substrate binding domain H9K48_16970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_16985 PF03466 LysR substrate binding domain H9K48_16985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_16990 PF01565 FAD binding domain H9K48_16990 PF08031 Berberine and berberine like H9K48_16995 PF00724 NADH:flavin oxidoreductase / NADH oxidase family H9K48_17005 PF01040 UbiA prenyltransferase family H9K48_17015 PF00510 Cytochrome c oxidase subunit III H9K48_17020 PF00115 Cytochrome C and Quinol oxidase polypeptide I H9K48_17025 PF00116 Cytochrome C oxidase subunit II, periplasmic domain H9K48_17025 PF06481 COX Aromatic Rich Motif H9K48_17035 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase H9K48_17035 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase H9K48_17040 PF00378 Enoyl-CoA hydratase/isomerase H9K48_17045 PF00378 Enoyl-CoA hydratase/isomerase H9K48_17050 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H9K48_17050 PF02770 Acyl-CoA dehydrogenase, middle domain H9K48_17050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H9K48_17055 PF00171 Aldehyde dehydrogenase family H9K48_17060 PF02803 Thiolase, C-terminal domain H9K48_17060 PF00108 Thiolase, N-terminal domain H9K48_17065 PF09278 MerR, DNA binding H9K48_17065 PF00376 MerR family regulatory protein H9K48_17070 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H9K48_17070 PF02770 Acyl-CoA dehydrogenase, middle domain H9K48_17070 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H9K48_17075 PF01039 Carboxyl transferase domain H9K48_17080 PF00378 Enoyl-CoA hydratase/isomerase H9K48_17085 PF00682 HMGL-like H9K48_17090 PF10063 Uncharacterized integral membrane protein (DUF2301) H9K48_17100 PF08447 PAS fold H9K48_17100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9K48_17100 PF13426 PAS domain H9K48_17105 PF00871 Acetokinase family H9K48_17110 PF00563 EAL domain H9K48_17110 PF00990 Diguanylate cyclase, GGDEF domain H9K48_17110 PF13426 PAS domain H9K48_17115 PF03880 DbpA RNA binding domain H9K48_17115 PF00270 DEAD/DEAH box helicase H9K48_17115 PF00271 Helicase conserved C-terminal domain H9K48_17120 PF00575 S1 RNA binding domain H9K48_17120 PF00773 RNB domain H9K48_17120 PF08206 Ribonuclease B OB domain H9K48_17125 PF12833 Helix-turn-helix domain H9K48_17135 PF12849 PBP superfamily domain H9K48_17140 PF01575 MaoC like domain H9K48_17150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_17150 PF03466 LysR substrate binding domain H9K48_17155 PF04055 Radical SAM superfamily H9K48_17155 PF13186 Iron-sulfur cluster-binding domain H9K48_17160 PF00884 Sulfatase H9K48_17165 PF03466 LysR substrate binding domain H9K48_17165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_17175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9K48_17175 PF00672 HAMP domain H9K48_17175 PF12729 Four helix bundle sensory module for signal transduction H9K48_17180 PF00005 ABC transporter H9K48_17185 PF12792 CSS motif domain associated with EAL H9K48_17185 PF00563 EAL domain H9K48_17205 PF00271 Helicase conserved C-terminal domain H9K48_17205 PF00270 DEAD/DEAH box helicase H9K48_17210 PF02492 CobW/HypB/UreG, nucleotide-binding domain H9K48_17210 PF07683 Cobalamin synthesis protein cobW C-terminal domain H9K48_17220 PF01470 Pyroglutamyl peptidase H9K48_17230 PF00291 Pyridoxal-phosphate dependent enzyme H9K48_17235 PF09905 DNA-binding protein VF530 H9K48_17240 PF00270 DEAD/DEAH box helicase H9K48_17240 PF00271 Helicase conserved C-terminal domain H9K48_17245 PF12843 Putative quorum-sensing-regulated virulence factor H9K48_17265 PF01329 Pterin 4 alpha carbinolamine dehydratase H9K48_17270 PF00351 Biopterin-dependent aromatic amino acid hydroxylase H9K48_17275 PF00501 AMP-binding enzyme H9K48_17275 PF13193 AMP-binding enzyme C-terminal domain H9K48_17285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_17285 PF03466 LysR substrate binding domain H9K48_17310 PF00892 EamA-like transporter family H9K48_17325 PF00465 Iron-containing alcohol dehydrogenase H9K48_17330 PF07995 Glucose / Sorbosone dehydrogenase H9K48_17340 PF00210 Ferritin-like domain H9K48_17345 PF00672 HAMP domain H9K48_17345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9K48_17345 PF17200 Single Cache domain 2 H9K48_17355 PF12704 MacB-like periplasmic core domain H9K48_17355 PF00005 ABC transporter H9K48_17355 PF02687 FtsX-like permease family H9K48_17360 PF02687 FtsX-like permease family H9K48_17360 PF00005 ABC transporter H9K48_17360 PF12704 MacB-like periplasmic core domain H9K48_17375 PF00990 Diguanylate cyclase, GGDEF domain H9K48_17380 PF08447 PAS fold H9K48_17380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9K48_17380 PF13426 PAS domain H9K48_17385 PF03889 Alternative ribosome-rescue factor A H9K48_17390 PF00313 'Cold-shock' DNA-binding domain H9K48_17420 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase H9K48_17420 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase H9K48_17425 PF01040 UbiA prenyltransferase family H9K48_17430 PF02628 Cytochrome oxidase assembly protein H9K48_17450 PF00510 Cytochrome c oxidase subunit III H9K48_17455 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 H9K48_17460 PF00115 Cytochrome C and Quinol oxidase polypeptide I H9K48_17465 PF00116 Cytochrome C oxidase subunit II, periplasmic domain H9K48_17465 PF02790 Cytochrome C oxidase subunit II, transmembrane domain H9K48_17470 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III H9K48_17470 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I H9K48_17470 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II H9K48_17470 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain H9K48_17480 PF01810 LysE type translocator H9K48_17485 PF12833 Helix-turn-helix domain H9K48_17500 PF01557 Fumarylacetoacetate (FAA) hydrolase family H9K48_17510 PF00267 Gram-negative porin H9K48_17515 PF00892 EamA-like transporter family H9K48_17520 PF00462 Glutaredoxin H9K48_17530 PF07690 Major Facilitator Superfamily H9K48_17535 PF03466 LysR substrate binding domain H9K48_17535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_17540 PF00990 Diguanylate cyclase, GGDEF domain H9K48_17540 PF00563 EAL domain H9K48_17540 PF08448 PAS fold H9K48_17540 PF08447 PAS fold H9K48_17545 PF01551 Peptidase family M23 H9K48_17545 PF01476 LysM domain H9K48_17545 PF08525 Opacity-associated protein A N-terminal motif H9K48_17565 PF07670 Nucleoside recognition H9K48_17570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9K48_17570 PF02743 Cache domain H9K48_17570 PF00672 HAMP domain H9K48_17580 PF03222 Tryptophan/tyrosine permease family H9K48_17615 PF08240 Alcohol dehydrogenase GroES-like domain H9K48_17615 PF00107 Zinc-binding dehydrogenase H9K48_17620 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit H9K48_17620 PF02378 Phosphotransferase system, EIIC H9K48_17625 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 H9K48_17640 PF01758 Sodium Bile acid symporter family H9K48_17650 PF01161 Phosphatidylethanolamine-binding protein H9K48_17655 PF02567 Phenazine biosynthesis-like protein H9K48_17660 PF10282 Lactonase, 7-bladed beta-propeller H9K48_17665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9K48_17665 PF00672 HAMP domain H9K48_17675 PF00005 ABC transporter H9K48_17695 PF04879 Molybdopterin oxidoreductase Fe4S4 domain H9K48_17695 PF00384 Molybdopterin oxidoreductase H9K48_17695 PF12838 4Fe-4S dicluster domain H9K48_17695 PF01568 Molydopterin dinucleotide binding domain H9K48_17695 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region H9K48_17715 PF00873 AcrB/AcrD/AcrF family H9K48_17725 PF00111 2Fe-2S iron-sulfur cluster binding domain H9K48_17725 PF00970 Oxidoreductase FAD-binding domain H9K48_17725 PF00175 Oxidoreductase NAD-binding domain H9K48_17735 PF00990 Diguanylate cyclase, GGDEF domain H9K48_17745 PF13302 Acetyltransferase (GNAT) domain H9K48_17755 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) H9K48_17760 PF00873 AcrB/AcrD/AcrF family H9K48_17765 PF13533 Biotin-lipoyl like H9K48_17775 PF00326 Prolyl oligopeptidase family H9K48_17775 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain H9K48_17780 PF12848 ABC transporter H9K48_17780 PF00005 ABC transporter H9K48_17780 PF16326 ABC transporter C-terminal domain H9K48_17785 PF00582 Universal stress protein family H9K48_17790 PF02525 Flavodoxin-like fold H9K48_17795 PF00999 Sodium/hydrogen exchanger family H9K48_17795 PF02254 TrkA-N domain H9K48_17810 PF00128 Alpha amylase, catalytic domain H9K48_17820 PF04151 Bacterial pre-peptidase C-terminal domain H9K48_17820 PF08453 Peptidase family M9 N-terminal H9K48_17820 PF01752 Collagenase H9K48_17835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_17835 PF03466 LysR substrate binding domain H9K48_17840 PF00210 Ferritin-like domain H9K48_17845 PF00141 Peroxidase H9K48_17865 PF00082 Subtilase family H9K48_17870 PF13091 PLD-like domain H9K48_17870 PF13087 AAA domain H9K48_17890 PF00075 RNase H H9K48_17905 PF00239 Resolvase, N terminal domain H9K48_17905 PF02796 Helix-turn-helix domain of resolvase H9K48_17910 PF00239 Resolvase, N terminal domain H9K48_17910 PF07508 Recombinase H9K48_17910 PF13408 Recombinase zinc beta ribbon domain H9K48_17920 PF00072 Response regulator receiver domain H9K48_17920 PF01584 CheW-like domain H9K48_17930 PF01243 Pyridoxamine 5'-phosphate oxidase H9K48_17935 PF06228 Haem utilisation ChuX/HutX H9K48_17940 PF04055 Radical SAM superfamily H9K48_17945 PF03544 Gram-negative bacterial TonB protein C-terminal H9K48_17950 PF01618 MotA/TolQ/ExbB proton channel family H9K48_17955 PF02472 Biopolymer transport protein ExbD/TolR H9K48_17965 PF01032 FecCD transport family H9K48_17970 PF00005 ABC transporter H9K48_18010 PF01467 Cytidylyltransferase-like H9K48_18015 PF02540 NAD synthase H9K48_18020 PF03473 MOSC domain H9K48_18020 PF03473 MOSC domain H9K48_18020 PF03476 MOSC N-terminal beta barrel domain H9K48_18020 PF00111 2Fe-2S iron-sulfur cluster binding domain H9K48_18020 PF03476 MOSC N-terminal beta barrel domain H9K48_18020 PF00111 2Fe-2S iron-sulfur cluster binding domain H9K48_18025 PF01679 Proteolipid membrane potential modulator H9K48_18030 PF01979 Amidohydrolase family H9K48_18035 PF05661 Protein of unknown function (DUF808) H9K48_18065 PF12833 Helix-turn-helix domain H9K48_18065 PF01497 Periplasmic binding protein H9K48_18070 PF00155 Aminotransferase class I and II H9K48_18095 PF00535 Glycosyl transferase family 2 H9K48_18110 PF00270 DEAD/DEAH box helicase H9K48_18110 PF00271 Helicase conserved C-terminal domain H9K48_18120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_18120 PF03466 LysR substrate binding domain H9K48_18125 PF03466 LysR substrate binding domain H9K48_18125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_18135 PF00724 NADH:flavin oxidoreductase / NADH oxidase family H9K48_18140 PF00107 Zinc-binding dehydrogenase H9K48_18140 PF08240 Alcohol dehydrogenase GroES-like domain H9K48_18155 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term H9K48_18155 PF12833 Helix-turn-helix domain H9K48_18160 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) H9K48_18175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_18175 PF03466 LysR substrate binding domain H9K48_18180 PF00709 Adenylosuccinate synthetase H9K48_18185 PF17763 Glutaminase/Asparaginase C-terminal domain H9K48_18185 PF00710 Asparaginase, N-terminal H9K48_18190 PF03618 Kinase/pyrophosphorylase H9K48_18195 PF00391 PEP-utilising enzyme, mobile domain H9K48_18195 PF02896 PEP-utilising enzyme, TIM barrel domain H9K48_18195 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain H9K48_18210 PF00579 tRNA synthetases class I (W and Y) H9K48_18215 PF13416 Bacterial extracellular solute-binding protein H9K48_18225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_18225 PF03466 LysR substrate binding domain H9K48_18230 PF13533 Biotin-lipoyl like H9K48_18235 PF00873 AcrB/AcrD/AcrF family H9K48_18250 PF07694 5TMR of 5TMR-LYT H9K48_18250 PF00990 Diguanylate cyclase, GGDEF domain H9K48_18260 PF00196 Bacterial regulatory proteins, luxR family H9K48_18265 PF02836 Glycosyl hydrolases family 2, TIM barrel domain H9K48_18265 PF02837 Glycosyl hydrolases family 2, sugar binding domain H9K48_18265 PF00703 Glycosyl hydrolases family 2 H9K48_18265 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 H9K48_18270 PF02028 BCCT, betaine/carnitine/choline family transporter H9K48_18275 PF07702 UTRA domain H9K48_18275 PF00392 Bacterial regulatory proteins, gntR family H9K48_18300 PF08402 TOBE domain H9K48_18300 PF00005 ABC transporter H9K48_18325 PF00873 AcrB/AcrD/AcrF family H9K48_18330 PF13533 Biotin-lipoyl like H9K48_18335 PF13091 PLD-like domain H9K48_18360 PF09278 MerR, DNA binding H9K48_18360 PF00376 MerR family regulatory protein H9K48_18370 PF03466 LysR substrate binding domain H9K48_18370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_18380 PF13378 Enolase C-terminal domain-like H9K48_18380 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain H9K48_18385 PF00679 Elongation factor G C-terminus H9K48_18385 PF14492 Elongation Factor G, domain II H9K48_18385 PF03764 Elongation factor G, domain IV H9K48_18385 PF00009 Elongation factor Tu GTP binding domain H9K48_18385 PF03144 Elongation factor Tu domain 2 H9K48_18410 PF02001 Protein of unknown function DUF134 H9K48_18415 PF17185 NlpE C-terminal OB domain H9K48_18415 PF04170 NlpE N-terminal domain H9K48_18420 PF06629 MltA-interacting protein MipA H9K48_18430 PF00691 OmpA family H9K48_18430 PF01389 OmpA-like transmembrane domain H9K48_18435 PF03466 LysR substrate binding domain H9K48_18435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_18460 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family H9K48_18460 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain H9K48_18470 PF00857 Isochorismatase family H9K48_18480 PF06628 Catalase-related immune-responsive H9K48_18480 PF00199 Catalase H9K48_18490 PF00455 DeoR C terminal sensor domain H9K48_18490 PF08220 DeoR-like helix-turn-helix domain H9K48_18495 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H9K48_18500 PF01641 SelR domain H9K48_18500 PF01625 Peptide methionine sulfoxide reductase H9K48_18520 PF17678 Glycosyl hydrolase family 92 N-terminal domain H9K48_18520 PF07971 Glycosyl hydrolase family 92 H9K48_18525 PF07971 Glycosyl hydrolase family 92 H9K48_18525 PF17678 Glycosyl hydrolase family 92 N-terminal domain H9K48_18535 PF07971 Glycosyl hydrolase family 92 H9K48_18535 PF17678 Glycosyl hydrolase family 92 N-terminal domain H9K48_18540 PF03060 Nitronate monooxygenase H9K48_18545 PF02872 5'-nucleotidase, C-terminal domain H9K48_18545 PF00149 Calcineurin-like phosphoesterase H9K48_18555 PF08359 YsiA-like protein, C-terminal region H9K48_18555 PF00440 Bacterial regulatory proteins, tetR family H9K48_18570 PF03466 LysR substrate binding domain H9K48_18570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_18575 PF01810 LysE type translocator H9K48_18590 PF00118 TCP-1/cpn60 chaperonin family H9K48_18595 PF00166 Chaperonin 10 Kd subunit H9K48_18600 PF00581 Rhodanese-like domain H9K48_18625 PF01070 FMN-dependent dehydrogenase H9K48_18645 PF00669 Bacterial flagellin N-terminal helical region H9K48_18650 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H9K48_18650 PF00460 Flagella basal body rod protein H9K48_18655 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase H9K48_18655 PF10135 Rod binding protein H9K48_18660 PF02119 Flagellar P-ring protein H9K48_18665 PF02107 Flagellar L-ring protein H9K48_18670 PF00460 Flagella basal body rod protein H9K48_18670 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H9K48_18675 PF00460 Flagella basal body rod protein H9K48_18675 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H9K48_18680 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H9K48_18680 PF07559 Flagellar basal body protein FlaE H9K48_18680 PF00460 Flagella basal body rod protein H9K48_18685 PF03963 Flagellar hook capping protein - N-terminal region H9K48_18685 PF13861 FlgD Tudor-like domain H9K48_18685 PF13860 FlgD Ig-like domain H9K48_18690 PF00460 Flagella basal body rod protein H9K48_18690 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H9K48_18695 PF00460 Flagella basal body rod protein H9K48_18715 PF01464 Transglycosylase SLT domain H9K48_18720 PF00133 tRNA synthetases class I (I, L, M and V) H9K48_18720 PF08264 Anticodon-binding domain of tRNA H9K48_18740 PF03315 Serine dehydratase beta chain H9K48_18740 PF03313 Serine dehydratase alpha chain H9K48_18745 PF00854 POT family H9K48_18755 PF03466 LysR substrate binding domain H9K48_18755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_18765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_18765 PF03466 LysR substrate binding domain H9K48_18770 PF00691 OmpA family H9K48_18770 PF01389 OmpA-like transmembrane domain H9K48_18775 PF18027 Cytosolic carboxypeptidase N-terminal domain H9K48_18775 PF00246 Zinc carboxypeptidase H9K48_18780 PF01266 FAD dependent oxidoreductase H9K48_18785 PF04393 Protein of unknown function (DUF535) H9K48_18800 PF00392 Bacterial regulatory proteins, gntR family H9K48_18800 PF07702 UTRA domain H9K48_18805 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_18810 PF00005 ABC transporter H9K48_18825 PF00266 Aminotransferase class-V H9K48_18830 PF00202 Aminotransferase class-III H9K48_18835 PF13419 Haloacid dehalogenase-like hydrolase H9K48_18840 PF00356 Bacterial regulatory proteins, lacI family H9K48_18845 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 H9K48_18855 PF03611 PTS system sugar-specific permease component H9K48_18865 PF00082 Subtilase family H9K48_18865 PF05922 Peptidase inhibitor I9 H9K48_18870 PF00657 GDSL-like Lipase/Acylhydrolase H9K48_18875 PF02321 Outer membrane efflux protein H9K48_18880 PF00005 ABC transporter H9K48_18880 PF02687 FtsX-like permease family H9K48_18880 PF12704 MacB-like periplasmic core domain H9K48_18885 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H9K48_18890 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) H9K48_18895 PF00194 Eukaryotic-type carbonic anhydrase H9K48_18900 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) H9K48_18915 PF13419 Haloacid dehalogenase-like hydrolase H9K48_18920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_18920 PF03466 LysR substrate binding domain H9K48_18950 PF14602 Hexapeptide repeat of succinyl-transferase H9K48_18950 PF12464 Maltose acetyltransferase H9K48_18955 PF02566 OsmC-like protein H9K48_18960 PF01641 SelR domain H9K48_18960 PF01625 Peptide methionine sulfoxide reductase H9K48_18970 PF00919 Uncharacterized protein family UPF0004 H9K48_18970 PF04055 Radical SAM superfamily H9K48_18975 PF04244 Deoxyribodipyrimidine photo-lyase-related protein H9K48_18980 PF00875 DNA photolyase H9K48_18980 PF03441 FAD binding domain of DNA photolyase H9K48_18985 PF00990 Diguanylate cyclase, GGDEF domain H9K48_19000 PF00672 HAMP domain H9K48_19000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9K48_19000 PF12729 Four helix bundle sensory module for signal transduction H9K48_19005 PF05230 MASE2 domain H9K48_19005 PF00990 Diguanylate cyclase, GGDEF domain H9K48_19010 PF13532 2OG-Fe(II) oxygenase superfamily H9K48_19020 PF07662 Na+ dependent nucleoside transporter C-terminus H9K48_19020 PF01773 Na+ dependent nucleoside transporter N-terminus H9K48_19020 PF07670 Nucleoside recognition H9K48_19035 PF01212 Beta-eliminating lyase H9K48_19045 PF01266 FAD dependent oxidoreductase H9K48_19060 PF05525 Branched-chain amino acid transport protein H9K48_19065 PF00990 Diguanylate cyclase, GGDEF domain H9K48_19065 PF08448 PAS fold H9K48_19070 PF02954 Bacterial regulatory protein, Fis family H9K48_19070 PF00158 Sigma-54 interaction domain H9K48_19070 PF00072 Response regulator receiver domain H9K48_19075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_19075 PF02743 Cache domain H9K48_19075 PF00512 His Kinase A (phospho-acceptor) domain H9K48_19080 PF00232 Glycosyl hydrolase family 1 H9K48_19100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_19100 PF03466 LysR substrate binding domain H9K48_19105 PF08443 RimK-like ATP-grasp domain H9K48_19105 PF18030 RimK PreATP-grasp domain H9K48_19110 PF18030 RimK PreATP-grasp domain H9K48_19110 PF08443 RimK-like ATP-grasp domain H9K48_19115 PF00753 Metallo-beta-lactamase superfamily H9K48_19120 PF17810 Arginine decarboxylase helical bundle domain H9K48_19120 PF17944 Arginine decarboxylase C-terminal helical extension H9K48_19120 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain H9K48_19125 PF00491 Arginase family H9K48_19130 PF07690 Major Facilitator Superfamily H9K48_19135 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain H9K48_19135 PF00326 Prolyl oligopeptidase family H9K48_19150 PF00950 ABC 3 transport family H9K48_19155 PF00005 ABC transporter H9K48_19160 PF01297 Zinc-uptake complex component A periplasmic H9K48_19200 PF02472 Biopolymer transport protein ExbD/TolR H9K48_19205 PF01618 MotA/TolQ/ExbB proton channel family H9K48_19210 PF01618 MotA/TolQ/ExbB proton channel family H9K48_19220 PF07715 TonB-dependent Receptor Plug Domain H9K48_19220 PF00593 TonB dependent receptor H9K48_19225 PF16750 Sensor domain of 2-component histidine kinase H9K48_19225 PF00512 His Kinase A (phospho-acceptor) domain H9K48_19225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_19225 PF00672 HAMP domain H9K48_19230 PF00486 Transcriptional regulatory protein, C terminal H9K48_19230 PF00072 Response regulator receiver domain H9K48_19235 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain H9K48_19235 PF00056 lactate/malate dehydrogenase, NAD binding domain H9K48_19240 PF03009 Glycerophosphoryl diester phosphodiesterase family H9K48_19250 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain H9K48_19250 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain H9K48_19255 PF10928 Protein of unknown function (DUF2810) H9K48_19305 PF04013 Putative SAM-dependent RNA methyltransferase H9K48_19310 PF01523 Putative modulator of DNA gyrase H9K48_19315 PF01523 Putative modulator of DNA gyrase H9K48_19320 PF08543 Phosphomethylpyrimidine kinase H9K48_19325 PF00005 ABC transporter H9K48_19330 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_19335 PF09084 NMT1/THI5 like H9K48_19340 PF03070 TENA/THI-4/PQQC family H9K48_19345 PF02110 Hydroxyethylthiazole kinase family H9K48_19350 PF02581 Thiamine monophosphate synthase H9K48_19360 PF00384 Molybdopterin oxidoreductase H9K48_19360 PF18364 Molybdopterin oxidoreductase N-terminal domain H9K48_19360 PF01568 Molydopterin dinucleotide binding domain H9K48_19365 PF03264 NapC/NirT cytochrome c family, N-terminal region H9K48_19390 PF00583 Acetyltransferase (GNAT) family H9K48_19410 PF00392 Bacterial regulatory proteins, gntR family H9K48_19410 PF00155 Aminotransferase class I and II H9K48_19415 PF02595 Glycerate kinase family H9K48_19420 PF02447 GntP family permease H9K48_19425 PF13556 PucR C-terminal helix-turn-helix domain H9K48_19425 PF17853 GGDEF-like domain H9K48_19425 PF05651 Putative sugar diacid recognition H9K48_19450 PF13419 Haloacid dehalogenase-like hydrolase H9K48_19465 PF03466 LysR substrate binding domain H9K48_19465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_19475 PF03466 LysR substrate binding domain H9K48_19475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_19480 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H9K48_19485 PF01661 Macro domain H9K48_19490 PF01204 Trehalase H9K48_19500 PF12706 Beta-lactamase superfamily domain H9K48_19510 PF07690 Major Facilitator Superfamily H9K48_19515 PF13533 Biotin-lipoyl like H9K48_19520 PF03922 OmpW family H9K48_19525 PF13599 Pentapeptide repeats (9 copies) H9K48_19540 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading H9K48_19540 PF18416 N-acetylglucosamine binding protein domain 2 H9K48_19545 PF01037 Lrp/AsnC ligand binding domain H9K48_19550 PF01810 LysE type translocator H9K48_19555 PF08021 Siderophore-interacting FAD-binding domain H9K48_19555 PF04954 Siderophore-interacting protein H9K48_19560 PF14583 Oligogalacturonate lyase H9K48_19570 PF13229 Right handed beta helix region H9K48_19585 PF01081 KDPG and KHG aldolase H9K48_19590 PF00294 pfkB family carbohydrate kinase H9K48_19605 PF07883 Cupin domain H9K48_19610 PF10688 Bacterial inner membrane protein H9K48_19620 PF09339 IclR helix-turn-helix domain H9K48_19620 PF01614 Bacterial transcriptional regulator H9K48_19635 PF03466 LysR substrate binding domain H9K48_19635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_19640 PF00797 N-acetyltransferase H9K48_19645 PF08240 Alcohol dehydrogenase GroES-like domain H9K48_19645 PF00107 Zinc-binding dehydrogenase H9K48_19650 PF00756 Putative esterase H9K48_19660 PF00990 Diguanylate cyclase, GGDEF domain H9K48_19660 PF17152 Periplasmic sensor domain H9K48_19675 PF03466 LysR substrate binding domain H9K48_19675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_19690 PF00849 RNA pseudouridylate synthase H9K48_19695 PF01554 MatE H9K48_19700 PF00990 Diguanylate cyclase, GGDEF domain H9K48_19700 PF00563 EAL domain H9K48_19710 PF06865 Pyrimidine/purine nucleoside phosphorylase H9K48_19720 PF00704 Glycosyl hydrolases family 18 H9K48_19720 PF08329 Chitinase A, N-terminal domain H9K48_19740 PF03600 Citrate transporter H9K48_19750 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 H9K48_19760 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain H9K48_19760 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain H9K48_19765 PF06029 AlkA N-terminal domain H9K48_19765 PF00730 HhH-GPD superfamily base excision DNA repair protein H9K48_19775 PF07681 DoxX H9K48_19780 PF02678 Pirin H9K48_19780 PF17954 Quercetinase C-terminal cupin domain H9K48_19785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_19785 PF03466 LysR substrate binding domain H9K48_19800 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase H9K48_19810 PF03616 Sodium/glutamate symporter H9K48_19815 PF00155 Aminotransferase class I and II H9K48_19815 PF00392 Bacterial regulatory proteins, gntR family H9K48_19820 PF00005 ABC transporter H9K48_19830 PF03616 Sodium/glutamate symporter H9K48_19835 PF00132 Bacterial transferase hexapeptide (six repeats) H9K48_19850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9K48_19850 PF00672 HAMP domain H9K48_19850 PF17200 Single Cache domain 2 H9K48_19855 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD H9K48_19865 PF00072 Response regulator receiver domain H9K48_19865 PF04397 LytTr DNA-binding domain H9K48_19870 PF06580 Histidine kinase H9K48_19870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_19870 PF13492 GAF domain H9K48_19870 PF07694 5TMR of 5TMR-LYT H9K48_19890 PF00005 ABC transporter H9K48_19900 PF01098 Cell cycle protein H9K48_19905 PF01709 Transcriptional regulator H9K48_19915 PF00072 Response regulator receiver domain H9K48_19915 PF01627 Hpt domain H9K48_19915 PF00512 His Kinase A (phospho-acceptor) domain H9K48_19915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_19915 PF00672 HAMP domain H9K48_19915 PF17149 Periplasmic sensor domain found in signal transduction proteins H9K48_19925 PF08719 Domain of unknown function (DUF1768) H9K48_19925 PF00925 GTP cyclohydrolase II H9K48_19935 PF00005 ABC transporter H9K48_19935 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H9K48_19940 PF00005 ABC transporter H9K48_19940 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H9K48_19955 PF13614 AAA domain H9K48_19955 PF18607 ParA helix turn helix domain H9K48_19960 PF08775 ParB family H9K48_19960 PF02195 ParB-like nuclease domain H9K48_19965 PF05127 Helicase H9K48_19965 PF13718 GNAT acetyltransferase 2 H9K48_19975 PF00132 Bacterial transferase hexapeptide (six repeats) H9K48_19980 PF03466 LysR substrate binding domain H9K48_19980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_19985 PF03575 Peptidase family S51 H9K48_19990 PF00267 Gram-negative porin H9K48_19995 PF00367 phosphotransferase system, EIIB H9K48_19995 PF02378 Phosphotransferase system, EIIC H9K48_20000 PF01380 SIS domain H9K48_20005 PF01380 SIS domain H9K48_20005 PF01418 Helix-turn-helix domain, rpiR family H9K48_20010 PF00246 Zinc carboxypeptidase H9K48_20015 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle H9K48_20020 PF03358 NADPH-dependent FMN reductase H9K48_20030 PF03412 Peptidase C39 family H9K48_20030 PF00005 ABC transporter H9K48_20030 PF00664 ABC transporter transmembrane region H9K48_20045 PF00529 HlyD membrane-fusion protein of T1SS H9K48_20050 PF02954 Bacterial regulatory protein, Fis family H9K48_20050 PF00072 Response regulator receiver domain H9K48_20050 PF00158 Sigma-54 interaction domain H9K48_20055 PF00512 His Kinase A (phospho-acceptor) domain H9K48_20055 PF02743 Cache domain H9K48_20055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_20060 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region H9K48_20060 PF01243 Pyridoxamine 5'-phosphate oxidase H9K48_20070 PF12833 Helix-turn-helix domain H9K48_20075 PF00171 Aldehyde dehydrogenase family H9K48_20075 PF01619 Proline dehydrogenase H9K48_20075 PF14850 DNA-binding domain of Proline dehydrogenase H9K48_20075 PF18327 Proline utilization A proline dehydrogenase N-terminal domain H9K48_20085 PF00474 Sodium:solute symporter family H9K48_20120 PF01037 Lrp/AsnC ligand binding domain H9K48_20130 PF00664 ABC transporter transmembrane region H9K48_20130 PF00005 ABC transporter H9K48_20140 PF06719 AraC-type transcriptional regulator N-terminus H9K48_20140 PF12833 Helix-turn-helix domain H9K48_20155 PF10688 Bacterial inner membrane protein H9K48_20160 PF01081 KDPG and KHG aldolase H9K48_20165 PF00294 pfkB family carbohydrate kinase H9K48_20170 PF02614 Glucuronate isomerase H9K48_20175 PF01232 Mannitol dehydrogenase Rossmann domain H9K48_20175 PF08125 Mannitol dehydrogenase C-terminal domain H9K48_20180 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component H9K48_20185 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component H9K48_20190 PF03480 Bacterial extracellular solute-binding protein, family 7 H9K48_20195 PF07729 FCD domain H9K48_20195 PF00392 Bacterial regulatory proteins, gntR family H9K48_20200 PF03786 D-mannonate dehydratase (UxuA) H9K48_20205 PF00270 DEAD/DEAH box helicase H9K48_20205 PF00271 Helicase conserved C-terminal domain H9K48_20210 PF03473 MOSC domain H9K48_20210 PF03475 3-alpha domain H9K48_20225 PF11975 Family 4 glycosyl hydrolase C-terminal domain H9K48_20225 PF02056 Family 4 glycosyl hydrolase H9K48_20230 PF03466 LysR substrate binding domain H9K48_20230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_20235 PF00672 HAMP domain H9K48_20235 PF02743 Cache domain H9K48_20235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9K48_20245 PF04542 Sigma-70 region 2 H9K48_20245 PF08281 Sigma-70, region 4 H9K48_20250 PF01965 DJ-1/PfpI family H9K48_20250 PF12833 Helix-turn-helix domain H9K48_20255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_20255 PF03466 LysR substrate binding domain H9K48_20270 PF07992 Pyridine nucleotide-disulphide oxidoreductase H9K48_20270 PF13192 Thioredoxin domain H9K48_20275 PF00578 AhpC/TSA family H9K48_20275 PF10417 C-terminal domain of 1-Cys peroxiredoxin H9K48_20280 PF01047 MarR family H9K48_20285 PF02566 OsmC-like protein H9K48_20300 PF02311 AraC-like ligand binding domain H9K48_20300 PF12833 Helix-turn-helix domain H9K48_20310 PF02610 L-arabinose isomerase H9K48_20310 PF11762 L-arabinose isomerase C-terminal domain H9K48_20315 PF00596 Class II Aldolase and Adducin N-terminal domain H9K48_20320 PF02782 FGGY family of carbohydrate kinases, C-terminal domain H9K48_20320 PF00370 FGGY family of carbohydrate kinases, N-terminal domain H9K48_20325 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family H9K48_20330 PF00005 ABC transporter H9K48_20335 PF02653 Branched-chain amino acid transport system / permease component H9K48_20340 PF01136 Peptidase family U32 H9K48_20350 PF02378 Phosphotransferase system, EIIC H9K48_20350 PF00367 phosphotransferase system, EIIB H9K48_20355 PF00486 Transcriptional regulatory protein, C terminal H9K48_20355 PF00072 Response regulator receiver domain H9K48_20360 PF08521 Two-component sensor kinase N-terminal H9K48_20360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_20360 PF00512 His Kinase A (phospho-acceptor) domain H9K48_20365 PF01547 Bacterial extracellular solute-binding protein H9K48_20370 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain H9K48_20370 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain H9K48_20375 PF06276 Ferric iron reductase FhuF-like transporter H9K48_20375 PF04183 IucA / IucC family H9K48_20380 PF07690 Major Facilitator Superfamily H9K48_20385 PF06276 Ferric iron reductase FhuF-like transporter H9K48_20385 PF04183 IucA / IucC family H9K48_20390 PF02655 ATP-grasp domain H9K48_20390 PF00206 Lyase H9K48_20395 PF00593 TonB dependent receptor H9K48_20395 PF07715 TonB-dependent Receptor Plug Domain H9K48_20400 PF00593 TonB dependent receptor H9K48_20400 PF07660 Secretin and TonB N terminus short domain H9K48_20400 PF07715 TonB-dependent Receptor Plug Domain H9K48_20405 PF01497 Periplasmic binding protein H9K48_20410 PF01032 FecCD transport family H9K48_20415 PF01032 FecCD transport family H9K48_20420 PF00005 ABC transporter H9K48_20425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9K48_20425 PF17200 Single Cache domain 2 H9K48_20425 PF00672 HAMP domain H9K48_20430 PF00675 Insulinase (Peptidase family M16) H9K48_20430 PF05193 Peptidase M16 inactive domain H9K48_20440 PF01551 Peptidase family M23 H9K48_20440 PF04225 Opacity-associated protein A LysM-like domain H9K48_20450 PF07690 Major Facilitator Superfamily H9K48_20460 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) H9K48_20460 PF00128 Alpha amylase, catalytic domain H9K48_20465 PF02264 LamB porin H9K48_20480 PF00128 Alpha amylase, catalytic domain H9K48_20480 PF02903 Alpha amylase, N-terminal ig-like domain H9K48_20485 PF04231 Endonuclease I H9K48_20490 PF17967 Pullulanase N2 domain H9K48_20490 PF11852 Domain of unknown function (DUF3372) H9K48_20490 PF18494 Pullulanase Ins domain H9K48_20490 PF03714 Bacterial pullanase-associated domain H9K48_20490 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) H9K48_20505 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain H9K48_20505 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain H9K48_20505 PF01276 Orn/Lys/Arg decarboxylase, major domain H9K48_20510 PF13520 Amino acid permease H9K48_20520 PF08543 Phosphomethylpyrimidine kinase H9K48_20530 PF00375 Sodium:dicarboxylate symporter family H9K48_20535 PF03193 RsgA GTPase H9K48_20540 PF00367 phosphotransferase system, EIIB H9K48_20540 PF02378 Phosphotransferase system, EIIC H9K48_20550 PF02630 SCO1/SenC H9K48_20565 PF00196 Bacterial regulatory proteins, luxR family H9K48_20565 PF17874 MalT-like TPR region H9K48_20570 PF00343 Carbohydrate phosphorylase H9K48_20575 PF02446 4-alpha-glucanotransferase H9K48_20580 PF00128 Alpha amylase, catalytic domain H9K48_20580 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) H9K48_20580 PF02806 Alpha amylase, C-terminal all-beta domain H9K48_20585 PF00912 Transglycosylase H9K48_20590 PF00128 Alpha amylase, catalytic domain H9K48_20605 PF07670 Nucleoside recognition H9K48_20610 PF07670 Nucleoside recognition H9K48_20615 PF07687 Peptidase dimerisation domain H9K48_20615 PF01546 Peptidase family M20/M25/M40 H9K48_20620 PF06803 Protein of unknown function (DUF1232) H9K48_20625 PF00375 Sodium:dicarboxylate symporter family H9K48_20635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_20635 PF03466 LysR substrate binding domain H9K48_20640 PF08803 Putative mono-oxygenase ydhR H9K48_20650 PF13614 AAA domain H9K48_20650 PF13807 G-rich domain on putative tyrosine kinase H9K48_20650 PF02706 Chain length determinant protein H9K48_20655 PF01451 Low molecular weight phosphotyrosine protein phosphatase H9K48_20660 PF18412 Outer-membrane lipoprotein Wza C-terminal domain H9K48_20660 PF02563 Polysaccharide biosynthesis/export protein H9K48_20660 PF10531 SLBB domain H9K48_20665 PF00881 Nitroreductase family H9K48_20670 PF01914 MarC family integral membrane protein H9K48_20675 PF01734 Patatin-like phospholipase H9K48_20680 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading H9K48_20680 PF18416 N-acetylglucosamine binding protein domain 2 H9K48_20685 PF17773 UPF0176 acylphosphatase like domain H9K48_20685 PF00581 Rhodanese-like domain H9K48_20695 PF00561 alpha/beta hydrolase fold H9K48_20700 PF00768 D-alanyl-D-alanine carboxypeptidase H9K48_20700 PF07943 Penicillin-binding protein 5, C-terminal domain H9K48_20705 PF00686 Starch binding domain H9K48_20705 PF00128 Alpha amylase, catalytic domain H9K48_20715 PF00881 Nitroreductase family H9K48_20725 PF03466 LysR substrate binding domain H9K48_20725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_20730 PF09905 DNA-binding protein VF530 H9K48_20740 PF00175 Oxidoreductase NAD-binding domain H9K48_20740 PF00970 Oxidoreductase FAD-binding domain H9K48_20750 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) H9K48_20755 PF01594 AI-2E family transporter H9K48_20765 PF13533 Biotin-lipoyl like H9K48_20785 PF00892 EamA-like transporter family H9K48_20790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_20790 PF03466 LysR substrate binding domain H9K48_20795 PF07690 Major Facilitator Superfamily H9K48_20805 PF00583 Acetyltransferase (GNAT) family H9K48_20815 PF00923 Transaldolase/Fructose-6-phosphate aldolase H9K48_20820 PF04055 Radical SAM superfamily H9K48_20825 PF02901 Pyruvate formate lyase-like H9K48_20825 PF01228 Glycine radical H9K48_20860 PF08000 Bacterial PH domain H9K48_20870 PF00691 OmpA family H9K48_20870 PF13677 Membrane MotB of proton-channel complex MotA/MotB H9K48_20875 PF01618 MotA/TolQ/ExbB proton channel family H9K48_20880 PF04542 Sigma-70 region 2 H9K48_20880 PF04545 Sigma-70, region 4 H9K48_20885 PF03748 Flagellar basal body-associated protein FliL H9K48_20900 PF02561 Flagellar protein FliS H9K48_20905 PF07195 Flagellar hook-associated protein 2 C-terminus H9K48_20905 PF02465 Flagellar hook-associated protein 2 N-terminus H9K48_20905 PF07196 Flagellin hook IN motif H9K48_20910 PF00700 Bacterial flagellin C-terminal helical region H9K48_20910 PF00669 Bacterial flagellin N-terminal helical region H9K48_20920 PF00771 FHIPEP family H9K48_20925 PF01312 FlhB HrpN YscU SpaS Family H9K48_20930 PF01311 Bacterial export proteins, family 1 H9K48_20935 PF01313 Bacterial export proteins, family 3 H9K48_20940 PF00813 FliP family H9K48_20945 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term H9K48_20960 PF02954 Bacterial regulatory protein, Fis family H9K48_20960 PF00158 Sigma-54 interaction domain H9K48_20960 PF00072 Response regulator receiver domain H9K48_20965 PF02049 Flagellar hook-basal body complex protein FliE H9K48_20970 PF08345 Flagellar M-ring protein C-terminal H9K48_20970 PF01514 Secretory protein of YscJ/FliF family H9K48_20975 PF14841 FliG middle domain H9K48_20975 PF14842 FliG N-terminal domain H9K48_20975 PF01706 FliG C-terminal domain H9K48_20985 PF18269 T3SS EscN ATPase C-terminal domain H9K48_20985 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain H9K48_21000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_21000 PF03466 LysR substrate binding domain H9K48_21035 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H9K48_21040 PF03466 LysR substrate binding domain H9K48_21040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_21060 PF00486 Transcriptional regulatory protein, C terminal H9K48_21060 PF00072 Response regulator receiver domain H9K48_21065 PF00512 His Kinase A (phospho-acceptor) domain H9K48_21065 PF16736 Single Cache-like H9K48_21065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_21065 PF00989 PAS fold H9K48_21070 PF00080 Copper/zinc superoxide dismutase (SODC) H9K48_21075 PF00266 Aminotransferase class-V H9K48_21080 PF00497 Bacterial extracellular solute-binding proteins, family 3 H9K48_21085 PF00563 EAL domain H9K48_21085 PF00990 Diguanylate cyclase, GGDEF domain H9K48_21085 PF03707 Bacterial signalling protein N terminal repeat H9K48_21090 PF00155 Aminotransferase class I and II H9K48_21095 PF08240 Alcohol dehydrogenase GroES-like domain H9K48_21095 PF00107 Zinc-binding dehydrogenase H9K48_21125 PF00194 Eukaryotic-type carbonic anhydrase H9K48_21130 PF00924 Mechanosensitive ion channel H9K48_21140 PF01070 FMN-dependent dehydrogenase H9K48_21145 PF02652 L-lactate permease H9K48_21150 PF03466 LysR substrate binding domain H9K48_21150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_21155 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain H9K48_21155 PF00326 Prolyl oligopeptidase family H9K48_21160 PF00005 ABC transporter H9K48_21160 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H9K48_21170 PF13654 AAA domain H9K48_21170 PF05362 Lon protease (S16) C-terminal proteolytic domain H9K48_21175 PF00672 HAMP domain H9K48_21175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9K48_21180 PF12945 Flagellar protein YcgR H9K48_21180 PF07238 PilZ domain H9K48_21195 PF00583 Acetyltransferase (GNAT) family H9K48_21200 PF12800 4Fe-4S binding domain H9K48_21200 PF12838 4Fe-4S dicluster domain H9K48_21205 PF13237 4Fe-4S dicluster domain H9K48_21205 PF12801 4Fe-4S binding domain H9K48_21220 PF00005 ABC transporter H9K48_21220 PF12558 ATP-binding cassette cobalt transporter H9K48_21225 PF07155 ECF-type riboflavin transporter, S component H9K48_21230 PF00529 HlyD membrane-fusion protein of T1SS H9K48_21230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H9K48_21235 PF11742 Protein of unknown function (DUF3302) H9K48_21240 PF00990 Diguanylate cyclase, GGDEF domain H9K48_21255 PF01048 Phosphorylase superfamily H9K48_21260 PF08349 Protein of unknown function (DUF1722) H9K48_21265 PF13411 MerR HTH family regulatory protein H9K48_21270 PF03441 FAD binding domain of DNA photolyase H9K48_21270 PF00875 DNA photolyase H9K48_21275 PF03734 L,D-transpeptidase catalytic domain H9K48_21275 PF01476 LysM domain H9K48_21275 PF17969 L,D-transpeptidase C-terminal domain H9K48_21285 PF00271 Helicase conserved C-terminal domain H9K48_21285 PF00270 DEAD/DEAH box helicase H9K48_21290 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain H9K48_21290 PF00326 Prolyl oligopeptidase family H9K48_21295 PF00593 TonB dependent receptor H9K48_21295 PF07715 TonB-dependent Receptor Plug Domain H9K48_21315 PF00672 HAMP domain H9K48_21315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9K48_21320 PF12849 PBP superfamily domain H9K48_21325 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_21330 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_21335 PF00005 ABC transporter H9K48_21355 PF07584 Aerotolerance regulator N-terminal H9K48_21355 PF13519 von Willebrand factor type A domain H9K48_21360 PF13519 von Willebrand factor type A domain H9K48_21370 PF01882 Protein of unknown function DUF58 H9K48_21375 PF17863 AAA lid domain H9K48_21375 PF07726 ATPase family associated with various cellular activities (AAA) H9K48_21380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9K48_21380 PF02743 Cache domain H9K48_21380 PF00672 HAMP domain H9K48_21390 PF00196 Bacterial regulatory proteins, luxR family H9K48_21395 PF00196 Bacterial regulatory proteins, luxR family H9K48_21405 PF00005 ABC transporter H9K48_21405 PF00664 ABC transporter transmembrane region H9K48_21410 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H9K48_21410 PF00529 HlyD membrane-fusion protein of T1SS H9K48_21425 PF00691 OmpA family H9K48_21425 PF01389 OmpA-like transmembrane domain H9K48_21435 PF01032 FecCD transport family H9K48_21440 PF01497 Periplasmic binding protein H9K48_21445 PF00005 ABC transporter H9K48_21450 PF07715 TonB-dependent Receptor Plug Domain H9K48_21450 PF00593 TonB dependent receptor H9K48_21455 PF00664 ABC transporter transmembrane region H9K48_21455 PF00005 ABC transporter H9K48_21460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_21460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_21460 PF00512 His Kinase A (phospho-acceptor) domain H9K48_21460 PF02702 Osmosensitive K+ channel His kinase sensor domain H9K48_21460 PF00512 His Kinase A (phospho-acceptor) domain H9K48_21460 PF13493 Domain of unknown function (DUF4118) H9K48_21460 PF02702 Osmosensitive K+ channel His kinase sensor domain H9K48_21460 PF13493 Domain of unknown function (DUF4118) H9K48_21465 PF00072 Response regulator receiver domain H9K48_21465 PF00486 Transcriptional regulatory protein, C terminal H9K48_21470 PF02080 TrkA-C domain H9K48_21470 PF02254 TrkA-N domain H9K48_21475 PF02386 Cation transport protein H9K48_21480 PF03707 Bacterial signalling protein N terminal repeat H9K48_21480 PF00563 EAL domain H9K48_21480 PF00990 Diguanylate cyclase, GGDEF domain H9K48_21485 PF00127 Copper binding proteins, plastocyanin/azurin family H9K48_21490 PF13419 Haloacid dehalogenase-like hydrolase H9K48_21500 PF01238 Phosphomannose isomerase type I H9K48_21505 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit H9K48_21505 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 H9K48_21510 PF12833 Helix-turn-helix domain H9K48_21520 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit H9K48_21530 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase H9K48_21530 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase H9K48_21535 PF06628 Catalase-related immune-responsive H9K48_21535 PF00199 Catalase H9K48_21540 PF13417 Glutathione S-transferase, N-terminal domain H9K48_21545 PF00107 Zinc-binding dehydrogenase H9K48_21545 PF16884 N-terminal domain of oxidoreductase H9K48_21550 PF16925 Tetracyclin repressor-like, C-terminal domain H9K48_21550 PF00440 Bacterial regulatory proteins, tetR family H9K48_21555 PF04266 ASCH domain H9K48_21585 PF13439 Glycosyltransferase Family 4 H9K48_21585 PF00534 Glycosyl transferases group 1 H9K48_21595 PF13614 AAA domain H9K48_21595 PF02706 Chain length determinant protein H9K48_21595 PF13807 G-rich domain on putative tyrosine kinase H9K48_21610 PF02397 Bacterial sugar transferase H9K48_21615 PF00005 ABC transporter H9K48_21615 PF08402 TOBE domain H9K48_21620 PF01547 Bacterial extracellular solute-binding protein H9K48_21625 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_21625 PF14785 Maltose transport system permease protein MalF P2 domain H9K48_21630 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_21680 PF01872 RibD C-terminal domain H9K48_21685 PF02909 Tetracyclin repressor-like, C-terminal domain H9K48_21685 PF00440 Bacterial regulatory proteins, tetR family H9K48_21690 PF02798 Glutathione S-transferase, N-terminal domain H9K48_21695 PF00768 D-alanyl-D-alanine carboxypeptidase H9K48_21695 PF07943 Penicillin-binding protein 5, C-terminal domain H9K48_21710 PF08534 Redoxin H9K48_21710 PF00462 Glutaredoxin H9K48_21715 PF00962 Adenosine/AMP deaminase H9K48_21730 PF00313 'Cold-shock' DNA-binding domain H9K48_21735 PF02678 Pirin H9K48_21735 PF05726 Pirin C-terminal cupin domain H9K48_21740 PF01734 Patatin-like phospholipase H9K48_21750 PF01047 MarR family H9K48_21775 PF01408 Oxidoreductase family, NAD-binding Rossmann fold H9K48_21780 PF08019 Phosphoethanolamine transferase EptA/EptB H9K48_21780 PF00884 Sulfatase H9K48_21785 PF01219 Prokaryotic diacylglycerol kinase H9K48_21795 PF00672 HAMP domain H9K48_21795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_21795 PF00512 His Kinase A (phospho-acceptor) domain H9K48_21800 PF00072 Response regulator receiver domain H9K48_21800 PF00486 Transcriptional regulatory protein, C terminal H9K48_21805 PF00106 short chain dehydrogenase H9K48_21820 PF01323 DSBA-like thioredoxin domain H9K48_21835 PF00255 Glutathione peroxidase H9K48_21840 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase H9K48_21850 PF07690 Major Facilitator Superfamily H9K48_21860 PF01966 HD domain H9K48_21870 PF07969 Amidohydrolase family H9K48_21875 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin H9K48_21880 PF00571 CBS domain H9K48_21880 PF01769 Divalent cation transporter H9K48_21880 PF03448 MgtE intracellular N domain H9K48_21885 PF03109 ABC1 family H9K48_21895 PF00155 Aminotransferase class I and II H9K48_21895 PF00392 Bacterial regulatory proteins, gntR family H9K48_21900 PF13520 Amino acid permease H9K48_21905 PF01037 Lrp/AsnC ligand binding domain H9K48_21905 PF13404 AsnC-type helix-turn-helix domain H9K48_21910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_21910 PF03466 LysR substrate binding domain H9K48_21930 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain H9K48_21930 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain H9K48_21935 PF00072 Response regulator receiver domain H9K48_21935 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) H9K48_21935 PF01627 Hpt domain H9K48_21935 PF00512 His Kinase A (phospho-acceptor) domain H9K48_21935 PF00672 HAMP domain H9K48_21935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_21940 PF01408 Oxidoreductase family, NAD-binding Rossmann fold H9K48_21945 PF01554 MatE H9K48_21950 PF04363 Protein of unknown function (DUF496) H9K48_21960 PF04337 Protein of unknown function, DUF480 H9K48_21965 PF01541 GIY-YIG catalytic domain H9K48_21970 PF13407 Periplasmic binding protein domain H9K48_21975 PF00072 Response regulator receiver domain H9K48_21975 PF00512 His Kinase A (phospho-acceptor) domain H9K48_21975 PF09308 LuxQ, periplasmic H9K48_21975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_21985 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H9K48_21985 PF00529 HlyD membrane-fusion protein of T1SS H9K48_22005 PF01037 Lrp/AsnC ligand binding domain H9K48_22030 PF02355 Protein export membrane protein H9K48_22030 PF13721 SecD export protein N-terminal TM region H9K48_22030 PF07549 SecD/SecF GG Motif H9K48_22035 PF02355 Protein export membrane protein H9K48_22035 PF07549 SecD/SecF GG Motif H9K48_22045 PF01810 LysE type translocator H9K48_22050 PF00106 short chain dehydrogenase H9K48_22055 PF00108 Thiolase, N-terminal domain H9K48_22055 PF02803 Thiolase, C-terminal domain H9K48_22065 PF00561 alpha/beta hydrolase fold H9K48_22065 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus H9K48_22075 PF03264 NapC/NirT cytochrome c family, N-terminal region H9K48_22080 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) H9K48_22085 PF04879 Molybdopterin oxidoreductase Fe4S4 domain H9K48_22085 PF00384 Molybdopterin oxidoreductase H9K48_22085 PF01568 Molydopterin dinucleotide binding domain H9K48_22095 PF13187 4Fe-4S dicluster domain H9K48_22095 PF12838 4Fe-4S dicluster domain H9K48_22100 PF00672 HAMP domain H9K48_22100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_22100 PF07730 Histidine kinase H9K48_22100 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term H9K48_22105 PF00072 Response regulator receiver domain H9K48_22105 PF00196 Bacterial regulatory proteins, luxR family H9K48_22120 PF07687 Peptidase dimerisation domain H9K48_22120 PF01546 Peptidase family M20/M25/M40 H9K48_22125 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region H9K48_22130 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H9K48_22135 PF00873 AcrB/AcrD/AcrF family H9K48_22140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9K48_22140 PF12729 Four helix bundle sensory module for signal transduction H9K48_22140 PF00672 HAMP domain H9K48_22145 PF00472 RF-1 domain H9K48_22150 PF13419 Haloacid dehalogenase-like hydrolase H9K48_22155 PF01389 OmpA-like transmembrane domain H9K48_22155 PF00691 OmpA family H9K48_22160 PF00793 DAHP synthetase I family H9K48_22165 PF07690 Major Facilitator Superfamily H9K48_22170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9K48_22170 PF08447 PAS fold H9K48_22175 PF00456 Transketolase, thiamine diphosphate binding domain H9K48_22175 PF02780 Transketolase, C-terminal domain H9K48_22175 PF02779 Transketolase, pyrimidine binding domain H9K48_22180 PF00923 Transaldolase/Fructose-6-phosphate aldolase H9K48_22190 PF00704 Glycosyl hydrolases family 18 H9K48_22190 PF08329 Chitinase A, N-terminal domain H9K48_22195 PF03707 Bacterial signalling protein N terminal repeat H9K48_22195 PF00563 EAL domain H9K48_22195 PF00990 Diguanylate cyclase, GGDEF domain H9K48_22200 PF00581 Rhodanese-like domain H9K48_22220 PF00899 ThiF family H9K48_22225 PF00994 Probable molybdopterin binding domain H9K48_22225 PF03454 MoeA C-terminal region (domain IV) H9K48_22225 PF03453 MoeA N-terminal region (domain I and II) H9K48_22230 PF01227 GTP cyclohydrolase I H9K48_22235 PF01566 Natural resistance-associated macrophage protein H9K48_22245 PF00654 Voltage gated chloride channel H9K48_22260 PF00248 Aldo/keto reductase family H9K48_22265 PF00072 Response regulator receiver domain H9K48_22275 PF03853 YjeF-related protein N-terminus H9K48_22275 PF01256 Carbohydrate kinase H9K48_22280 PF00478 IMP dehydrogenase / GMP reductase domain H9K48_22285 PF00501 AMP-binding enzyme H9K48_22285 PF13193 AMP-binding enzyme C-terminal domain H9K48_22290 PF01012 Electron transfer flavoprotein domain H9K48_22290 PF00766 Electron transfer flavoprotein FAD-binding domain H9K48_22295 PF01012 Electron transfer flavoprotein domain H9K48_22305 PF00005 ABC transporter H9K48_22305 PF12399 Branched-chain amino acid ATP-binding cassette transporter H9K48_22330 PF00005 ABC transporter H9K48_22335 PF00501 AMP-binding enzyme H9K48_22335 PF14535 AMP-binding enzyme C-terminal domain H9K48_22340 PF05724 Thiopurine S-methyltransferase (TPMT) H9K48_22350 PF00034 Cytochrome c H9K48_22360 PF13411 MerR HTH family regulatory protein H9K48_22365 PF02627 Carboxymuconolactone decarboxylase family H9K48_22370 PF02567 Phenazine biosynthesis-like protein H9K48_22380 PF02322 Cytochrome bd terminal oxidase subunit II H9K48_22385 PF01654 Cytochrome bd terminal oxidase subunit I H9K48_22390 PF00155 Aminotransferase class I and II H9K48_22390 PF00392 Bacterial regulatory proteins, gntR family H9K48_22395 PF12464 Maltose acetyltransferase H9K48_22395 PF14602 Hexapeptide repeat of succinyl-transferase H9K48_22400 PF00924 Mechanosensitive ion channel H9K48_22400 PF12795 Mechanosensitive ion channel porin domain H9K48_22400 PF12794 Mechanosensitive ion channel inner membrane domain 1 H9K48_22415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_22415 PF00672 HAMP domain H9K48_22415 PF01627 Hpt domain H9K48_22415 PF00072 Response regulator receiver domain H9K48_22415 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) H9K48_22415 PF00512 His Kinase A (phospho-acceptor) domain H9K48_22420 PF00682 HMGL-like H9K48_22425 PF02785 Biotin carboxylase C-terminal domain H9K48_22425 PF00364 Biotin-requiring enzyme H9K48_22425 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain H9K48_22425 PF18140 Propionyl-coenzyme A carboxylase BT domain H9K48_22425 PF00289 Biotin carboxylase, N-terminal domain H9K48_22430 PF00378 Enoyl-CoA hydratase/isomerase H9K48_22435 PF01039 Carboxyl transferase domain H9K48_22440 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H9K48_22440 PF02770 Acyl-CoA dehydrogenase, middle domain H9K48_22440 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H9K48_22445 PF00376 MerR family regulatory protein H9K48_22445 PF09278 MerR, DNA binding H9K48_22450 PF00108 Thiolase, N-terminal domain H9K48_22450 PF02803 Thiolase, C-terminal domain H9K48_22455 PF00171 Aldehyde dehydrogenase family H9K48_22460 PF02770 Acyl-CoA dehydrogenase, middle domain H9K48_22460 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H9K48_22460 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H9K48_22465 PF00378 Enoyl-CoA hydratase/isomerase H9K48_22475 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase H9K48_22475 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase H9K48_22485 PF17151 Periplasmic sensor domain H9K48_22485 PF00990 Diguanylate cyclase, GGDEF domain H9K48_22490 PF00440 Bacterial regulatory proteins, tetR family H9K48_22490 PF13977 BetI-type transcriptional repressor, C-terminal H9K48_22495 PF00171 Aldehyde dehydrogenase family H9K48_22500 PF00732 GMC oxidoreductase H9K48_22500 PF05199 GMC oxidoreductase H9K48_22505 PF04069 Substrate binding domain of ABC-type glycine betaine transport system H9K48_22510 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_22515 PF00571 CBS domain H9K48_22515 PF00005 ABC transporter H9K48_22520 PF00881 Nitroreductase family H9K48_22530 PF01145 SPFH domain / Band 7 family H9K48_22530 PF16200 C-terminal region of band_7 H9K48_22540 PF00563 EAL domain H9K48_22540 PF00990 Diguanylate cyclase, GGDEF domain H9K48_22540 PF03707 Bacterial signalling protein N terminal repeat H9K48_22540 PF13188 PAS domain H9K48_22545 PF00034 Cytochrome c H9K48_22545 PF03150 Di-haem cytochrome c peroxidase H9K48_22550 PF09308 LuxQ, periplasmic H9K48_22550 PF00512 His Kinase A (phospho-acceptor) domain H9K48_22550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_22550 PF00072 Response regulator receiver domain H9K48_22565 PF04116 Fatty acid hydroxylase superfamily H9K48_22605 PF01048 Phosphorylase superfamily H9K48_22610 PF00563 EAL domain H9K48_22610 PF00990 Diguanylate cyclase, GGDEF domain H9K48_22615 PF05025 RbsD / FucU transport protein family H9K48_22620 PF00005 ABC transporter H9K48_22625 PF02653 Branched-chain amino acid transport system / permease component H9K48_22630 PF13407 Periplasmic binding protein domain H9K48_22635 PF00294 pfkB family carbohydrate kinase H9K48_22640 PF00356 Bacterial regulatory proteins, lacI family H9K48_22650 PF04973 Nicotinamide mononucleotide transporter H9K48_22655 PF01048 Phosphorylase superfamily H9K48_22675 PF00486 Transcriptional regulatory protein, C terminal H9K48_22675 PF00072 Response regulator receiver domain H9K48_22690 PF00245 Alkaline phosphatase H9K48_22700 PF00082 Subtilase family H9K48_22700 PF01483 Proprotein convertase P-domain H9K48_22715 PF03222 Tryptophan/tyrosine permease family H9K48_22720 PF00583 Acetyltransferase (GNAT) family H9K48_22725 PF01568 Molydopterin dinucleotide binding domain H9K48_22725 PF04879 Molybdopterin oxidoreductase Fe4S4 domain H9K48_22725 PF00384 Molybdopterin oxidoreductase H9K48_22730 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases H9K48_22730 PF10414 Sirohaem synthase dimerisation region H9K48_22730 PF14824 Sirohaem biosynthesis protein central H9K48_22735 PF00591 Glycosyl transferase family, a/b domain H9K48_22735 PF02885 Glycosyl transferase family, helical bundle domain H9K48_22740 PF01738 Dienelactone hydrolase family H9K48_22745 PF08376 Nitrate and nitrite sensing H9K48_22745 PF03861 ANTAR domain H9K48_22750 PF00005 ABC transporter H9K48_22755 PF00528 Binding-protein-dependent transport system inner membrane component H9K48_22760 PF00005 ABC transporter H9K48_22765 PF01077 Nitrite and sulphite reductase 4Fe-4S domain H9K48_22765 PF04324 BFD-like [2Fe-2S] binding domain H9K48_22765 PF07992 Pyridine nucleotide-disulphide oxidoreductase H9K48_22765 PF13806 Rieske-like [2Fe-2S] domain H9K48_22765 PF18267 Rubredoxin NAD+ reductase C-terminal domain H9K48_22765 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain H9K48_22780 PF00440 Bacterial regulatory proteins, tetR family H9K48_22780 PF08361 MAATS-type transcriptional repressor, C-terminal region H9K48_22795 PF00211 Adenylate and Guanylate cyclase catalytic domain H9K48_22795 PF00072 Response regulator receiver domain H9K48_22820 PF00069 Protein kinase domain H9K48_22820 PF03793 PASTA domain H9K48_22835 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE H9K48_22840 PF00691 OmpA family H9K48_22840 PF13677 Membrane MotB of proton-channel complex MotA/MotB H9K48_22845 PF06744 Type VI secretion protein IcmF C-terminal H9K48_22845 PF14331 ImcF-related N-terminal domain H9K48_22845 PF06761 Intracellular multiplication and human macrophage-killing H9K48_22865 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 H9K48_22870 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath H9K48_22875 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath H9K48_22890 PF05947 Type VI secretion system, TssF H9K48_22900 PF10431 C-terminal, D2-small domain, of ClpB protein H9K48_22900 PF17871 AAA lid domain H9K48_22900 PF00004 ATPase family associated with various cellular activities (AAA) H9K48_22900 PF07724 AAA domain (Cdc48 subfamily) H9K48_22910 PF04717 Type VI secretion system, phage-baseplate injector H9K48_22910 PF06715 Gp5 C-terminal repeat (3 copies) H9K48_22925 PF12320 Type 5 capsule protein repressor C-terminal domain H9K48_22925 PF00149 Calcineurin-like phosphoesterase H9K48_22930 PF13476 AAA domain H9K48_22950 PF08212 Lipocalin-like domain H9K48_22960 PF07690 Major Facilitator Superfamily H9K48_22970 PF03606 C4-dicarboxylate anaerobic carrier H9K48_22975 PF00034 Cytochrome c H9K48_22980 PF01212 Beta-eliminating lyase H9K48_22990 PF07728 AAA domain (dynein-related subfamily) H9K48_22990 PF17868 AAA lid domain H9K48_22990 PF12592 Protein of unknown function (DUF3763) H9K48_22995 PF05762 VWA domain containing CoxE-like protein H9K48_23010 PF03466 LysR substrate binding domain H9K48_23010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_23015 PF01565 FAD binding domain H9K48_23015 PF09330 D-lactate dehydrogenase, membrane binding H9K48_23030 PF00842 Alanine racemase, C-terminal domain H9K48_23030 PF01168 Alanine racemase, N-terminal domain H9K48_23035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9K48_23035 PF00672 HAMP domain H9K48_23050 PF00128 Alpha amylase, catalytic domain H9K48_23050 PF09154 Domain of unknown function (DUF1939) H9K48_23070 PF06965 Na+/H+ antiporter 1 H9K48_23070 PF13462 Thioredoxin H9K48_23105 PF01272 Transcription elongation factor, GreA/GreB, C-term H9K48_23105 PF14760 Rnk N-terminus H9K48_23110 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain H9K48_23110 PF07992 Pyridine nucleotide-disulphide oxidoreductase H9K48_23110 PF01077 Nitrite and sulphite reductase 4Fe-4S domain H9K48_23110 PF18267 Rubredoxin NAD+ reductase C-terminal domain H9K48_23110 PF04324 BFD-like [2Fe-2S] binding domain H9K48_23115 PF13806 Rieske-like [2Fe-2S] domain H9K48_23120 PF01226 Formate/nitrite transporter H9K48_23125 PF10414 Sirohaem synthase dimerisation region H9K48_23125 PF14824 Sirohaem biosynthesis protein central H9K48_23125 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases H9K48_23140 PF03605 Anaerobic c4-dicarboxylate membrane transporter H9K48_23150 PF07715 TonB-dependent Receptor Plug Domain H9K48_23150 PF00593 TonB dependent receptor H9K48_23165 PF11756 Nitrous oxide-stimulated promoter H9K48_23170 PF01554 MatE H9K48_23175 PF07494 Two component regulator propeller H9K48_23175 PF12833 Helix-turn-helix domain H9K48_23175 PF07495 Y_Y_Y domain H9K48_23175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_23175 PF00072 Response regulator receiver domain H9K48_23175 PF00512 His Kinase A (phospho-acceptor) domain H9K48_23180 PF07690 Major Facilitator Superfamily H9K48_23185 PF00085 Thioredoxin H9K48_23190 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III H9K48_23190 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal H9K48_23210 PF01238 Phosphomannose isomerase type I H9K48_23215 PF07690 Major Facilitator Superfamily H9K48_23220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9K48_23220 PF07730 Histidine kinase H9K48_23220 PF05231 MASE1 H9K48_23225 PF00196 Bacterial regulatory proteins, luxR family H9K48_23225 PF00072 Response regulator receiver domain H9K48_23230 PF07690 Major Facilitator Superfamily H9K48_23235 PF02634 FdhD/NarQ family H9K48_23240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9K48_23240 PF03466 LysR substrate binding domain H9K48_23245 PF00384 Molybdopterin oxidoreductase H9K48_23250 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain H9K48_23250 PF07992 Pyridine nucleotide-disulphide oxidoreductase H9K48_23265 PF04143 Sulphur transport H9K48_23275 PF00873 AcrB/AcrD/AcrF family H9K48_23280 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H9K48_23290 PF03477 ATP cone domain H9K48_23290 PF13597 Anaerobic ribonucleoside-triphosphate reductase