locus-tag class description KBU60_00005 PF00308 Bacterial dnaA protein KBU60_00005 PF08299 Bacterial dnaA protein helix-turn-helix KBU60_00005 PF11638 DnaA N-terminal domain KBU60_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain KBU60_00010 PF02767 DNA polymerase III beta subunit, central domain KBU60_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain KBU60_00015 PF02463 RecF/RecN/SMC N terminal domain KBU60_00020 PF01751 Toprim domain KBU60_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_00020 PF18053 DNA gyrase B subunit insert domain KBU60_00020 PF00986 DNA gyrase B subunit, carboxyl terminus KBU60_00020 PF00204 DNA gyrase B KBU60_00030 PF00011 Hsp20/alpha crystallin family KBU60_00035 PF00155 Aminotransferase class I and II KBU60_00040 PF00128 Alpha amylase, catalytic domain KBU60_00045 PF05746 DALR anticodon binding domain KBU60_00045 PF02092 Glycyl-tRNA synthetase beta subunit KBU60_00050 PF02091 Glycyl-tRNA synthetase alpha subunit KBU60_00055 PF01169 Uncharacterized protein family UPF0016 KBU60_00065 PF01206 Sulfurtransferase TusA KBU60_00075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_00075 PF03466 LysR substrate binding domain KBU60_00080 PF08240 Alcohol dehydrogenase GroES-like domain KBU60_00080 PF00107 Zinc-binding dehydrogenase KBU60_00085 PF02803 Thiolase, C-terminal domain KBU60_00085 PF00108 Thiolase, N-terminal domain KBU60_00090 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KBU60_00090 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KBU60_00090 PF00378 Enoyl-CoA hydratase/isomerase KBU60_00095 PF09186 Domain of unknown function (DUF1949) KBU60_00095 PF01205 Uncharacterized protein family UPF0029 KBU60_00100 PF02386 Cation transport protein KBU60_00105 PF12724 Flavodoxin domain KBU60_00145 PF13358 DDE superfamily endonuclease KBU60_00160 PF02537 CrcB-like protein, Camphor Resistance (CrcB) KBU60_00165 PF13667 ThiC-associated domain KBU60_00165 PF01964 Radical SAM ThiC family KBU60_00170 PF02581 Thiamine monophosphate synthase KBU60_00175 PF00899 ThiF family KBU60_00180 PF02597 ThiS family KBU60_00185 PF05690 Thiazole biosynthesis protein ThiG KBU60_00190 PF06968 Biotin and Thiamin Synthesis associated domain KBU60_00190 PF04055 Radical SAM superfamily KBU60_00195 PF01321 Creatinase/Prolidase N-terminal domain KBU60_00195 PF00557 Metallopeptidase family M24 KBU60_00195 PF01321 Creatinase/Prolidase N-terminal domain KBU60_00195 PF00557 Metallopeptidase family M24 KBU60_00200 PF03466 LysR substrate binding domain KBU60_00200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_00205 PF07690 Major Facilitator Superfamily KBU60_00225 PF05114 Protein of unknown function (DUF692) KBU60_00235 PF00580 UvrD/REP helicase N-terminal domain KBU60_00235 PF13361 UvrD-like helicase C-terminal domain KBU60_00245 PF01810 LysE type translocator KBU60_00255 PF00892 EamA-like transporter family KBU60_00260 PF00270 DEAD/DEAH box helicase KBU60_00260 PF16124 RecQ zinc-binding KBU60_00260 PF09382 RQC domain KBU60_00260 PF00271 Helicase conserved C-terminal domain KBU60_00260 PF00570 HRDC domain KBU60_00270 PF02592 Putative vitamin uptake transporter KBU60_00275 PF02541 Ppx/GppA phosphatase family KBU60_00280 PF00270 DEAD/DEAH box helicase KBU60_00280 PF00271 Helicase conserved C-terminal domain KBU60_00285 PF00085 Thioredoxin KBU60_00290 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KBU60_00290 PF07498 Rho termination factor, N-terminal domain KBU60_00290 PF07497 Rho termination factor, RNA-binding domain KBU60_00300 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase KBU60_00305 PF00111 2Fe-2S iron-sulfur cluster binding domain KBU60_00310 PF00175 Oxidoreductase NAD-binding domain KBU60_00350 PF07219 HemY protein N-terminus KBU60_00355 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase KBU60_00360 PF02602 Uroporphyrinogen-III synthase HemD KBU60_00365 PF03900 Porphobilinogen deaminase, C-terminal domain KBU60_00365 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain KBU60_00370 PF01295 Adenylate cyclase, class-I KBU60_00370 PF12633 Adenylate cyclase NT domain KBU60_00375 PF01491 Frataxin-like domain KBU60_00385 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain KBU60_00385 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain KBU60_00390 PF01678 Diaminopimelate epimerase KBU60_00400 PF02899 Phage integrase, N-terminal SAM-like domain KBU60_00400 PF00589 Phage integrase family KBU60_00405 PF13419 Haloacid dehalogenase-like hydrolase KBU60_00410 PF08495 FIST N domain KBU60_00410 PF00563 EAL domain KBU60_00410 PF00990 Diguanylate cyclase, GGDEF domain KBU60_00410 PF10442 FIST C domain KBU60_00415 PF03942 DTW domain KBU60_00435 PF12146 Serine aminopeptidase, S33 KBU60_00440 PF01810 LysE type translocator KBU60_00445 PF08668 HDOD domain KBU60_00445 PF00563 EAL domain KBU60_00450 PF01022 Bacterial regulatory protein, arsR family KBU60_00455 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KBU60_00455 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KBU60_00500 PF01914 MarC family integral membrane protein KBU60_00515 PF02881 SRP54-type protein, helical bundle domain KBU60_00515 PF00448 SRP54-type protein, GTPase domain KBU60_00520 PF00005 ABC transporter KBU60_00525 PF18075 FtsX extracellular domain KBU60_00530 PF04545 Sigma-70, region 4 KBU60_00530 PF04542 Sigma-70 region 2 KBU60_00530 PF00140 Sigma-70 factor, region 1.2 KBU60_00535 PF00581 Rhodanese-like domain KBU60_00540 PF01694 Rhomboid family KBU60_00540 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease KBU60_00545 PF03748 Flagellar basal body-associated protein FliL KBU60_00550 PF04345 Chorismate lyase KBU60_00555 PF01040 UbiA prenyltransferase family KBU60_00560 PF01553 Acyltransferase KBU60_00565 PF00717 Peptidase S24-like KBU60_00565 PF01726 LexA DNA binding domain KBU60_00570 PF04072 Leucine carboxyl methyltransferase KBU60_00575 PF01554 MatE KBU60_00580 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KBU60_00580 PF07992 Pyridine nucleotide-disulphide oxidoreductase KBU60_00585 PF00440 Bacterial regulatory proteins, tetR family KBU60_00595 PF05958 tRNA (Uracil-5-)-methyltransferase KBU60_00600 PF00593 TonB dependent receptor KBU60_00600 PF07715 TonB-dependent Receptor Plug Domain KBU60_00610 PF01177 Asp/Glu/Hydantoin racemase KBU60_00665 PF13091 PLD-like domain KBU60_00675 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain KBU60_00675 PF01565 FAD binding domain KBU60_00680 PF02237 Biotin protein ligase C terminal domain KBU60_00680 PF03099 Biotin/lipoate A/B protein ligase family KBU60_00680 PF08279 HTH domain KBU60_00685 PF00485 Phosphoribulokinase / Uridine kinase family KBU60_00710 PF00009 Elongation factor Tu GTP binding domain KBU60_00710 PF03144 Elongation factor Tu domain 2 KBU60_00710 PF03143 Elongation factor Tu C-terminal domain KBU60_00715 PF00584 SecE/Sec61-gamma subunits of protein translocation complex KBU60_00720 PF00467 KOW motif KBU60_00720 PF02357 Transcription termination factor nusG KBU60_00725 PF00298 Ribosomal protein L11, RNA binding domain KBU60_00725 PF03946 Ribosomal protein L11, N-terminal domain KBU60_00730 PF00687 Ribosomal protein L1p/L10e family KBU60_00735 PF00466 Ribosomal protein L10 KBU60_00740 PF16320 Ribosomal protein L7/L12 dimerisation domain KBU60_00740 PF00542 Ribosomal protein L7/L12 C-terminal domain KBU60_00745 PF10385 RNA polymerase beta subunit external 1 domain KBU60_00745 PF04560 RNA polymerase Rpb2, domain 7 KBU60_00745 PF00562 RNA polymerase Rpb2, domain 6 KBU60_00745 PF04565 RNA polymerase Rpb2, domain 3 KBU60_00745 PF04561 RNA polymerase Rpb2, domain 2 KBU60_00745 PF04563 RNA polymerase beta subunit KBU60_00750 PF04997 RNA polymerase Rpb1, domain 1 KBU60_00750 PF05000 RNA polymerase Rpb1, domain 4 KBU60_00750 PF04998 RNA polymerase Rpb1, domain 5 KBU60_00750 PF00623 RNA polymerase Rpb1, domain 2 KBU60_00750 PF04983 RNA polymerase Rpb1, domain 3 KBU60_00755 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ KBU60_00760 PF00293 NUDIX domain KBU60_00760 PF09297 NADH pyrophosphatase zinc ribbon domain KBU60_00775 PF01208 Uroporphyrinogen decarboxylase (URO-D) KBU60_00780 PF03167 Uracil DNA glycosylase superfamily KBU60_00785 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KBU60_00790 PF04222 Protein of unknown function (DUF416) KBU60_00795 PF00571 CBS domain KBU60_00795 PF01595 Cyclin M transmembrane N-terminal domain KBU60_00800 PF00216 Bacterial DNA-binding protein KBU60_00810 PF02843 Phosphoribosylglycinamide synthetase, C domain KBU60_00810 PF02844 Phosphoribosylglycinamide synthetase, N domain KBU60_00810 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KBU60_00815 PF01808 AICARFT/IMPCHase bienzyme KBU60_00815 PF02142 MGS-like domain KBU60_00820 PF13411 MerR HTH family regulatory protein KBU60_00825 PF00486 Transcriptional regulatory protein, C terminal KBU60_00825 PF18500 CadC C-terminal domain 1 KBU60_00830 PF13520 Amino acid permease KBU60_00835 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain KBU60_00835 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain KBU60_00835 PF01276 Orn/Lys/Arg decarboxylase, major domain KBU60_00900 PF00990 Diguanylate cyclase, GGDEF domain KBU60_00900 PF05230 MASE2 domain KBU60_00905 PF00005 ABC transporter KBU60_00905 PF12848 ABC transporter KBU60_00910 PF07690 Major Facilitator Superfamily KBU60_00925 PF12161 HsdM N-terminal domain KBU60_00925 PF02384 N-6 DNA Methylase KBU60_00935 PF12008 Type I restriction and modification enzyme - subunit R C terminal KBU60_00935 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) KBU60_00935 PF18766 SWI2/SNF2 ATPase KBU60_00965 PF02954 Bacterial regulatory protein, Fis family KBU60_00970 PF01207 Dihydrouridine synthase (Dus) KBU60_00980 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KBU60_00980 PF02785 Biotin carboxylase C-terminal domain KBU60_00980 PF00289 Biotin carboxylase, N-terminal domain KBU60_00985 PF00364 Biotin-requiring enzyme KBU60_00990 PF01220 Dehydroquinase class II KBU60_00995 PF16177 Acetyl-coenzyme A synthetase N-terminus KBU60_00995 PF13193 AMP-binding enzyme C-terminal domain KBU60_00995 PF00501 AMP-binding enzyme KBU60_01010 PF12832 MFS_1 like family KBU60_01015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_01015 PF00512 His Kinase A (phospho-acceptor) domain KBU60_01015 PF09308 LuxQ, periplasmic KBU60_01015 PF00072 Response regulator receiver domain KBU60_01020 PF10415 Fumarase C C-terminus KBU60_01020 PF00206 Lyase KBU60_01035 PF00474 Sodium:solute symporter family KBU60_01045 PF02080 TrkA-C domain KBU60_01045 PF00999 Sodium/hydrogen exchanger family KBU60_01045 PF03471 Transporter associated domain KBU60_01050 PF00072 Response regulator receiver domain KBU60_01050 PF00196 Bacterial regulatory proteins, luxR family KBU60_01055 PF02683 Cytochrome C biogenesis protein transmembrane region KBU60_01055 PF11412 Disulphide bond corrector protein DsbC KBU60_01060 PF03605 Anaerobic c4-dicarboxylate membrane transporter KBU60_01065 PF00206 Lyase KBU60_01065 PF10415 Fumarase C C-terminus KBU60_01070 PF04186 FxsA cytoplasmic membrane protein KBU60_01075 PF00588 SpoU rRNA Methylase family KBU60_01080 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KBU60_01080 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KBU60_01085 PF16527 Two-component sensor protein CpxA, periplasmic domain KBU60_01085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_01085 PF00512 His Kinase A (phospho-acceptor) domain KBU60_01085 PF00672 HAMP domain KBU60_01090 PF00486 Transcriptional regulatory protein, C terminal KBU60_01090 PF00072 Response regulator receiver domain KBU60_01095 PF07813 LTXXQ motif family protein KBU60_01100 PF01545 Cation efflux family KBU60_01100 PF16916 Dimerisation domain of Zinc Transporter KBU60_01105 PF00365 Phosphofructokinase KBU60_01110 PF01554 MatE KBU60_01115 PF00166 Chaperonin 10 Kd subunit KBU60_01120 PF00118 TCP-1/cpn60 chaperonin family KBU60_01130 PF02308 MgtC family KBU60_01135 PF00842 Alanine racemase, C-terminal domain KBU60_01135 PF01168 Alanine racemase, N-terminal domain KBU60_01140 PF04055 Radical SAM superfamily KBU60_01145 PF09285 Elongation factor P, C-terminal KBU60_01145 PF08207 Elongation factor P (EF-P) KOW-like domain KBU60_01145 PF01132 Elongation factor P (EF-P) OB domain KBU60_01155 PF02313 Fumarate reductase subunit D KBU60_01160 PF02300 Fumarate reductase subunit C KBU60_01165 PF13183 4Fe-4S dicluster domain KBU60_01165 PF13085 2Fe-2S iron-sulfur cluster binding domain KBU60_01170 PF02910 Fumarate reductase flavoprotein C-term KBU60_01170 PF00890 FAD binding domain KBU60_01175 PF00152 tRNA synthetases class II (D, K and N) KBU60_01185 PF08360 QacR-like protein, C-terminal region KBU60_01185 PF00440 Bacterial regulatory proteins, tetR family KBU60_01195 PF01551 Peptidase family M23 KBU60_01200 PF06426 Serine acetyltransferase, N-terminal KBU60_01200 PF00132 Bacterial transferase hexapeptide (six repeats) KBU60_01205 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KBU60_01205 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus KBU60_01210 PF02556 Preprotein translocase subunit SecB KBU60_01215 PF00581 Rhodanese-like domain KBU60_01220 PF01676 Metalloenzyme superfamily KBU60_01220 PF06415 BPG-independent PGAM N-terminus (iPGM_N) KBU60_01230 PF00672 HAMP domain KBU60_01230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KBU60_01235 PF00939 Sodium:sulfate symporter transmembrane region KBU60_01240 PF02666 Phosphatidylserine decarboxylase KBU60_01245 PF03193 RsgA GTPase KBU60_01250 PF00929 Exonuclease KBU60_01310 PF08331 Domain of unknown function (DUF1730) KBU60_01315 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE KBU60_01320 PF01520 N-acetylmuramoyl-L-alanine amidase KBU60_01325 PF01119 DNA mismatch repair protein, C-terminal domain KBU60_01325 PF08676 MutL C terminal dimerisation domain KBU60_01335 PF17209 Hfq protein KBU60_01340 PF16360 GTP-binding GTPase Middle Region KBU60_01340 PF13167 GTP-binding GTPase N-terminal KBU60_01340 PF01926 50S ribosome-binding GTPase KBU60_01345 PF01145 SPFH domain / Band 7 family KBU60_01345 PF12221 Bacterial membrane protein N terminal KBU60_01350 PF01145 SPFH domain / Band 7 family KBU60_01355 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) KBU60_01360 PF00709 Adenylosuccinate synthetase KBU60_01365 PF08238 Sel1 repeat KBU60_01370 PF00970 Oxidoreductase FAD-binding domain KBU60_01370 PF00175 Oxidoreductase NAD-binding domain KBU60_01370 PF00042 Globin KBU60_01375 PF02082 Transcriptional regulator KBU60_01380 PF00575 S1 RNA binding domain KBU60_01380 PF00773 RNB domain KBU60_01380 PF08206 Ribonuclease B OB domain KBU60_01380 PF08461 Ribonuclease R winged-helix domain KBU60_01380 PF17876 Cold shock domain KBU60_01385 PF08032 RNA 2'-O ribose methyltransferase substrate binding KBU60_01385 PF00588 SpoU rRNA Methylase family KBU60_01390 PF13419 Haloacid dehalogenase-like hydrolase KBU60_01395 PF00579 tRNA synthetases class I (W and Y) KBU60_01410 PF00117 Glutamine amidotransferase class-I KBU60_01415 PF00202 Aminotransferase class-III KBU60_01420 PF04958 Arginine N-succinyltransferase beta subunit KBU60_01425 PF00171 Aldehyde dehydrogenase family KBU60_01435 PF00027 Cyclic nucleotide-binding domain KBU60_01435 PF13545 Crp-like helix-turn-helix domain KBU60_01440 PF00485 Phosphoribulokinase / Uridine kinase family KBU60_01445 PF06794 Uncharacterised protein family (UPF0270) KBU60_01450 PF00561 alpha/beta hydrolase fold KBU60_01460 PF00005 ABC transporter KBU60_01460 PF12848 ABC transporter KBU60_01465 PF02525 Flavodoxin-like fold KBU60_01470 PF00999 Sodium/hydrogen exchanger family KBU60_01470 PF02254 TrkA-N domain KBU60_01480 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KBU60_01485 PF01112 Asparaginase KBU60_01490 PF04102 SlyX KBU60_01500 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KBU60_01500 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KBU60_01505 PF08348 YheO-like PAS domain KBU60_01505 PF13309 HTH domain KBU60_01510 PF02635 DsrE/DsrF-like family KBU60_01515 PF02635 DsrE/DsrF-like family KBU60_01520 PF04077 DsrH like protein KBU60_01525 PF00164 Ribosomal protein S12/S23 KBU60_01530 PF00177 Ribosomal protein S7p/S5e KBU60_01535 PF00679 Elongation factor G C-terminus KBU60_01535 PF14492 Elongation Factor G, domain II KBU60_01535 PF03764 Elongation factor G, domain IV KBU60_01535 PF00009 Elongation factor Tu GTP binding domain KBU60_01535 PF03144 Elongation factor Tu domain 2 KBU60_01540 PF00009 Elongation factor Tu GTP binding domain KBU60_01540 PF03143 Elongation factor Tu C-terminal domain KBU60_01540 PF03144 Elongation factor Tu domain 2 KBU60_01545 PF04324 BFD-like [2Fe-2S] binding domain KBU60_01550 PF00210 Ferritin-like domain KBU60_01555 PF00390 Malic enzyme, N-terminal domain KBU60_01555 PF03949 Malic enzyme, NAD binding domain KBU60_01560 PF01340 Met Apo-repressor, MetJ KBU60_01565 PF01053 Cys/Met metabolism PLP-dependent enzyme KBU60_01570 PF00742 Homoserine dehydrogenase KBU60_01570 PF03447 Homoserine dehydrogenase, NAD binding domain KBU60_01570 PF00696 Amino acid kinase family KBU60_01575 PF02219 Methylenetetrahydrofolate reductase KBU60_01585 PF00311 Phosphoenolpyruvate carboxylase KBU60_01590 PF07687 Peptidase dimerisation domain KBU60_01590 PF01546 Peptidase family M20/M25/M40 KBU60_01595 PF01118 Semialdehyde dehydrogenase, NAD binding domain KBU60_01595 PF02774 Semialdehyde dehydrogenase, dimerisation domain KBU60_01600 PF00696 Amino acid kinase family KBU60_01605 PF00764 Arginosuccinate synthase KBU60_01610 PF00583 Acetyltransferase (GNAT) family KBU60_01610 PF14698 Argininosuccinate lyase C-terminal KBU60_01610 PF00206 Lyase KBU60_01620 PF00462 Glutaredoxin KBU60_01620 PF08534 Redoxin KBU60_01625 PF03466 LysR substrate binding domain KBU60_01625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_01630 PF00912 Transglycosylase KBU60_01630 PF00905 Penicillin binding protein transpeptidase domain KBU60_01630 PF17092 Penicillin-binding protein OB-like domain KBU60_01640 PF05137 Fimbrial assembly protein (PilN) KBU60_01650 PF04351 Pilus assembly protein, PilP KBU60_01655 PF00263 Bacterial type II and III secretion system protein KBU60_01655 PF07660 Secretin and TonB N terminus short domain KBU60_01655 PF11741 AMIN domain KBU60_01655 PF03958 Bacterial type II/III secretion system short domain KBU60_01660 PF01202 Shikimate kinase KBU60_01665 PF01761 3-dehydroquinate synthase KBU60_01675 PF02086 D12 class N6 adenine-specific DNA methyltransferase KBU60_01680 PF00834 Ribulose-phosphate 3 epimerase family KBU60_01685 PF01250 Ribosomal protein S6 KBU60_01690 PF00436 Single-strand binding protein family KBU60_01695 PF01084 Ribosomal protein S18 KBU60_01700 PF03948 Ribosomal protein L9, C-terminal domain KBU60_01700 PF01281 Ribosomal protein L9, N-terminal domain KBU60_01710 PF00772 DnaB-like helicase N terminal domain KBU60_01710 PF03796 DnaB-like helicase C terminal domain KBU60_01715 PF00842 Alanine racemase, C-terminal domain KBU60_01715 PF01168 Alanine racemase, N-terminal domain KBU60_01725 PF01894 Uncharacterised protein family UPF0047 KBU60_01730 PF00342 Phosphoglucose isomerase KBU60_01740 PF01475 Ferric uptake regulator family KBU60_01745 PF01207 Dihydrouridine synthase (Dus) KBU60_01765 PF00175 Oxidoreductase NAD-binding domain KBU60_01765 PF00258 Flavodoxin KBU60_01765 PF00667 FAD binding domain KBU60_01770 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KBU60_01770 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KBU60_01775 PF01507 Phosphoadenosine phosphosulfate reductase family KBU60_01835 PF13358 DDE superfamily endonuclease KBU60_01845 PF00999 Sodium/hydrogen exchanger family KBU60_01850 PF02607 B12 binding domain KBU60_01850 PF02965 Vitamin B12 dependent methionine synthase, activation domain KBU60_01850 PF00809 Pterin binding enzyme KBU60_01850 PF02574 Homocysteine S-methyltransferase KBU60_01850 PF02310 B12 binding domain KBU60_01855 PF00696 Amino acid kinase family KBU60_01855 PF01842 ACT domain KBU60_01860 PF00266 Aminotransferase class-V KBU60_01870 PF00005 ABC transporter KBU60_01870 PF17755 UvrA DNA-binding domain KBU60_01870 PF17760 UvrA interaction domain KBU60_01875 PF00483 Nucleotidyl transferase KBU60_01880 PF00196 Bacterial regulatory proteins, luxR family KBU60_01885 PF00436 Single-strand binding protein family KBU60_01890 PF17157 Gammaproteobacterial periplasmic sensor domain KBU60_01890 PF00563 EAL domain KBU60_01890 PF00990 Diguanylate cyclase, GGDEF domain KBU60_01910 PF11741 AMIN domain KBU60_01910 PF07660 Secretin and TonB N terminus short domain KBU60_01910 PF03958 Bacterial type II/III secretion system short domain KBU60_01910 PF00263 Bacterial type II and III secretion system protein KBU60_01915 PF13401 AAA domain KBU60_01915 PF01471 Putative peptidoglycan binding domain KBU60_01925 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KBU60_01925 PF00437 Type II/IV secretion system protein KBU60_01930 PF00482 Type II secretion system (T2SS), protein F KBU60_01940 PF07963 Prokaryotic N-terminal methylation motif KBU60_01980 PF04085 rod shape-determining protein MreC KBU60_01985 PF04093 rod shape-determining protein MreD KBU60_01990 PF02545 Maf-like protein KBU60_01995 PF00575 S1 RNA binding domain KBU60_01995 PF10150 Ribonuclease E/G family KBU60_02000 PF13116 Protein of unknown function KBU60_02000 PF13502 AsmA-like C-terminal region KBU60_02005 PF00795 Carbon-nitrogen hydrolase KBU60_02010 PF01523 Putative modulator of DNA gyrase KBU60_02015 PF02562 PhoH-like protein KBU60_02015 PF13638 PIN domain KBU60_02020 PF18337 RapA N-terminal Tudor like domain KBU60_02020 PF00176 SNF2 family N-terminal domain KBU60_02020 PF12137 RNA polymerase recycling family C-terminal KBU60_02020 PF00271 Helicase conserved C-terminal domain KBU60_02020 PF18339 RapA N-terminal Tudor like domain 1 KBU60_02030 PF00849 RNA pseudouridylate synthase KBU60_02035 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KBU60_02035 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KBU60_02040 PF04751 Protein of unknown function (DUF615) KBU60_02045 PF01523 Putative modulator of DNA gyrase KBU60_02050 PF03448 MgtE intracellular N domain KBU60_02050 PF01769 Divalent cation transporter KBU60_02050 PF00571 CBS domain KBU60_02055 PF00381 PTS HPr component phosphorylation site KBU60_02060 PF03668 P-loop ATPase protein family KBU60_02065 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KBU60_02070 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein KBU60_02075 PF04552 Sigma-54, DNA binding domain KBU60_02075 PF04963 Sigma-54 factor, core binding domain KBU60_02075 PF00309 Sigma-54 factor, Activator interacting domain (AID) KBU60_02080 PF12399 Branched-chain amino acid ATP-binding cassette transporter KBU60_02080 PF00005 ABC transporter KBU60_02085 PF03968 OstA-like protein KBU60_02095 PF01380 SIS domain KBU60_02095 PF00571 CBS domain KBU60_02100 PF01699 Sodium/calcium exchanger protein KBU60_02105 PF00005 ABC transporter KBU60_02110 PF02405 Permease MlaE KBU60_02115 PF02470 MlaD protein KBU60_02120 PF05494 MlaC protein KBU60_02130 PF01722 BolA-like protein KBU60_02135 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KBU60_02140 PF01553 Acyltransferase KBU60_02145 PF01042 Endoribonuclease L-PSP KBU60_02150 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain KBU60_02150 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain KBU60_02155 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KBU60_02155 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KBU60_02165 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KBU60_02165 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KBU60_02175 PF06877 Regulator of ribonuclease activity B KBU60_02185 PF00583 Acetyltransferase (GNAT) family KBU60_02195 PF10458 Valyl tRNA synthetase tRNA binding arm KBU60_02195 PF08264 Anticodon-binding domain of tRNA KBU60_02195 PF00133 tRNA synthetases class I (I, L, M and V) KBU60_02200 PF04364 DNA polymerase III chi subunit, HolC KBU60_02205 PF00883 Cytosol aminopeptidase family, catalytic domain KBU60_02205 PF02789 Cytosol aminopeptidase family, N-terminal domain KBU60_02210 PF03739 Lipopolysaccharide export system permease LptF/LptG KBU60_02215 PF03739 Lipopolysaccharide export system permease LptF/LptG KBU60_02230 PF00106 short chain dehydrogenase KBU60_02240 PF01522 Polysaccharide deacetylase KBU60_02245 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KBU60_02250 PF02378 Phosphotransferase system, EIIC KBU60_02255 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit KBU60_02260 PF02056 Family 4 glycosyl hydrolase KBU60_02260 PF11975 Family 4 glycosyl hydrolase C-terminal domain KBU60_02265 PF04794 YdjC-like protein KBU60_02270 PF00356 Bacterial regulatory proteins, lacI family KBU60_02270 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family KBU60_02275 PF00072 Response regulator receiver domain KBU60_02320 PF00171 Aldehyde dehydrogenase family KBU60_02350 PF17200 Single Cache domain 2 KBU60_02350 PF00672 HAMP domain KBU60_02350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KBU60_02390 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain KBU60_02390 PF01464 Transglycosylase SLT domain KBU60_02395 PF04362 Bacterial Fe(2+) trafficking KBU60_02400 PF00633 Helix-hairpin-helix motif KBU60_02400 PF00730 HhH-GPD superfamily base excision DNA repair protein KBU60_02400 PF14815 NUDIX domain KBU60_02405 PF02390 Putative methyltransferase KBU60_02410 PF02086 D12 class N6 adenine-specific DNA methyltransferase KBU60_02415 PF04960 Glutaminase KBU60_02420 PF06969 HemN C-terminal domain KBU60_02420 PF04055 Radical SAM superfamily KBU60_02425 PF01725 Ham1 family KBU60_02435 PF02594 Uncharacterised ACR, YggU family COG1872 KBU60_02440 PF02325 YGGT family KBU60_02445 PF03807 NADP oxidoreductase coenzyme F420-dependent KBU60_02445 PF14748 Pyrroline-5-carboxylate reductase dimerisation KBU60_02450 PF01168 Alanine racemase, N-terminal domain KBU60_02455 PF00437 Type II/IV secretion system protein KBU60_02460 PF00437 Type II/IV secretion system protein KBU60_02465 PF03652 Holliday junction resolvase KBU60_02470 PF02622 Uncharacterized ACR, COG1678 KBU60_02475 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain KBU60_02475 PF02951 Prokaryotic glutathione synthetase, N-terminal domain KBU60_02480 PF04452 RNA methyltransferase KBU60_02485 PF04231 Endonuclease I KBU60_02490 PF17283 SprT-like zinc ribbon domain KBU60_02490 PF10263 SprT-like family KBU60_02500 PF00438 S-adenosylmethionine synthetase, N-terminal domain KBU60_02500 PF02772 S-adenosylmethionine synthetase, central domain KBU60_02500 PF02773 S-adenosylmethionine synthetase, C-terminal domain KBU60_02505 PF02779 Transketolase, pyrimidine binding domain KBU60_02505 PF02780 Transketolase, C-terminal domain KBU60_02505 PF00456 Transketolase, thiamine diphosphate binding domain KBU60_02510 PF03466 LysR substrate binding domain KBU60_02510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_02515 PF00593 TonB dependent receptor KBU60_02515 PF07715 TonB-dependent Receptor Plug Domain KBU60_02520 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KBU60_02520 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KBU60_02525 PF00162 Phosphoglycerate kinase KBU60_02530 PF01116 Fructose-bisphosphate aldolase class-II KBU60_02535 PF00924 Mechanosensitive ion channel KBU60_02535 PF05552 Conserved TM helix KBU60_02540 PF04073 Aminoacyl-tRNA editing domain KBU60_02545 PF01810 LysE type translocator KBU60_02550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_02550 PF03466 LysR substrate binding domain KBU60_02555 PF04402 Protein of unknown function (DUF541) KBU60_02560 PF01842 ACT domain KBU60_02560 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KBU60_02560 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KBU60_02565 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) KBU60_02570 PF01812 5-formyltetrahydrofolate cyclo-ligase family KBU60_02580 PF05164 Cell division protein ZapA KBU60_02585 PF03695 Uncharacterised protein family (UPF0149) KBU60_02590 PF01494 FAD binding domain KBU60_02595 PF01494 FAD binding domain KBU60_02610 PF01571 Aminomethyltransferase folate-binding domain KBU60_02615 PF03937 Flavinator of succinate dehydrogenase KBU60_02620 PF00890 FAD binding domain KBU60_02620 PF02910 Fumarate reductase flavoprotein C-term KBU60_02625 PF08281 Sigma-70, region 4 KBU60_02625 PF04542 Sigma-70 region 2 KBU60_02630 PF03873 Anti sigma-E protein RseA, C-terminal domain KBU60_02630 PF03872 Anti sigma-E protein RseA, N-terminal domain KBU60_02635 PF17188 MucB/RseB C-terminal domain KBU60_02635 PF03888 MucB/RseB N-terminal domain KBU60_02645 PF06421 GTP-binding protein LepA C-terminus KBU60_02645 PF00009 Elongation factor Tu GTP binding domain KBU60_02645 PF00679 Elongation factor G C-terminus KBU60_02645 PF03144 Elongation factor Tu domain 2 KBU60_02650 PF10502 Signal peptidase, peptidase S26 KBU60_02655 PF14622 Ribonuclease-III-like KBU60_02655 PF00035 Double-stranded RNA binding motif KBU60_02660 PF07650 KH domain KBU60_02660 PF01926 50S ribosome-binding GTPase KBU60_02665 PF02565 Recombination protein O C terminal KBU60_02665 PF11967 Recombination protein O N terminal KBU60_02670 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ KBU60_02675 PF01648 4'-phosphopantetheinyl transferase superfamily KBU60_02680 PF00672 HAMP domain KBU60_02680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_02680 PF00512 His Kinase A (phospho-acceptor) domain KBU60_02680 PF01627 Hpt domain KBU60_02680 PF00072 Response regulator receiver domain KBU60_02680 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KBU60_02685 PF01938 TRAM domain KBU60_02685 PF05958 tRNA (Uracil-5-)-methyltransferase KBU60_02690 PF13291 ACT domain KBU60_02690 PF04607 Region found in RelA / SpoT proteins KBU60_02690 PF02824 TGS domain KBU60_02695 PF03819 MazG nucleotide pyrophosphohydrolase domain KBU60_02700 PF00117 Glutamine amidotransferase class-I KBU60_02700 PF06418 CTP synthase N-terminus KBU60_02705 PF03952 Enolase, N-terminal domain KBU60_02705 PF00113 Enolase, C-terminal TIM barrel domain KBU60_02710 PF04977 Septum formation initiator KBU60_02715 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase KBU60_02720 PF02542 YgbB family KBU60_02725 PF01142 tRNA pseudouridine synthase D (TruD) KBU60_02730 PF01975 Survival protein SurE KBU60_02740 PF01476 LysM domain KBU60_02740 PF01551 Peptidase family M23 KBU60_02745 PF04542 Sigma-70 region 2 KBU60_02745 PF00140 Sigma-70 factor, region 1.2 KBU60_02745 PF04539 Sigma-70 region 3 KBU60_02745 PF04545 Sigma-70, region 4 KBU60_02750 PF00488 MutS domain V KBU60_02750 PF05192 MutS domain III KBU60_02750 PF05188 MutS domain II KBU60_02750 PF01624 MutS domain I KBU60_02750 PF05190 MutS family domain IV KBU60_02755 PF02464 Competence-damaged protein KBU60_02760 PF00154 recA bacterial DNA recombination protein KBU60_02765 PF02631 RecX family KBU60_02770 PF01411 tRNA synthetases class II (A) KBU60_02770 PF02272 DHHA1 domain KBU60_02770 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KBU60_02775 PF13840 ACT domain KBU60_02775 PF00696 Amino acid kinase family KBU60_02775 PF01842 ACT domain KBU60_02780 PF02599 Global regulator protein family KBU60_02820 PF04277 Oxaloacetate decarboxylase, gamma chain KBU60_02825 PF02436 Conserved carboxylase domain KBU60_02825 PF00682 HMGL-like KBU60_02825 PF00364 Biotin-requiring enzyme KBU60_02830 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit KBU60_02835 PF08240 Alcohol dehydrogenase GroES-like domain KBU60_02835 PF00107 Zinc-binding dehydrogenase KBU60_02840 PF09335 SNARE associated Golgi protein KBU60_02845 PF00675 Insulinase (Peptidase family M16) KBU60_02845 PF05193 Peptidase M16 inactive domain KBU60_02850 PF04262 Glutamate-cysteine ligase KBU60_02860 PF02664 S-Ribosylhomocysteinase (LuxS) KBU60_02865 PF01595 Cyclin M transmembrane N-terminal domain KBU60_02865 PF00571 CBS domain KBU60_02865 PF03471 Transporter associated domain KBU60_02870 PF01578 Cytochrome C assembly protein KBU60_02875 PF02978 Signal peptide binding domain KBU60_02875 PF00448 SRP54-type protein, GTPase domain KBU60_02875 PF02881 SRP54-type protein, helical bundle domain KBU60_02880 PF00886 Ribosomal protein S16 KBU60_02885 PF01782 RimM N-terminal domain KBU60_02885 PF05239 PRC-barrel domain KBU60_02890 PF01746 tRNA (Guanine-1)-methyltransferase KBU60_02895 PF01245 Ribosomal protein L19 KBU60_02900 PF03884 DNA gyrase inhibitor YacG KBU60_02905 PF07072 Cell division protein KBU60_02910 PF01121 Dephospho-CoA kinase KBU60_02915 PF06750 Bacterial Peptidase A24 N-terminal domain KBU60_02915 PF01478 Type IV leader peptidase family KBU60_02920 PF00482 Type II secretion system (T2SS), protein F KBU60_02925 PF00437 Type II/IV secretion system protein KBU60_02925 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KBU60_02930 PF00114 Pilin (bacterial filament) KBU60_02930 PF07963 Prokaryotic N-terminal methylation motif KBU60_02935 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain KBU60_02935 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain KBU60_02940 PF01510 N-acetylmuramoyl-L-alanine amidase KBU60_02945 PF07729 FCD domain KBU60_02945 PF00392 Bacterial regulatory proteins, gntR family KBU60_02950 PF17831 Pyruvate dehydrogenase E1 component middle domain KBU60_02950 PF00456 Transketolase, thiamine diphosphate binding domain KBU60_02955 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KBU60_02955 PF00364 Biotin-requiring enzyme KBU60_02955 PF02817 e3 binding domain KBU60_02960 PF07992 Pyridine nucleotide-disulphide oxidoreductase KBU60_02960 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KBU60_02965 PF00440 Bacterial regulatory proteins, tetR family KBU60_02970 PF00156 Phosphoribosyl transferase domain KBU60_02975 PF00484 Carbonic anhydrase KBU60_02980 PF01740 STAS domain KBU60_02980 PF00916 Sulfate permease family KBU60_02985 PF00005 ABC transporter KBU60_02990 PF01061 ABC-2 type transporter KBU60_02995 PF03279 Bacterial lipid A biosynthesis acyltransferase KBU60_03000 PF02569 Pantoate-beta-alanine ligase KBU60_03005 PF02548 Ketopantoate hydroxymethyltransferase KBU60_03010 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) KBU60_03015 PF12626 Polymerase A arginine-rich C-terminus KBU60_03015 PF01743 Poly A polymerase head domain KBU60_03015 PF12627 Probable RNA and SrmB- binding site of polymerase A KBU60_03020 PF00749 tRNA synthetases class I (E and Q), catalytic domain KBU60_03025 PF01258 Prokaryotic dksA/traR C4-type zinc finger KBU60_03030 PF03749 Sugar fermentation stimulation protein RE domain KBU60_03030 PF17746 SfsA N-terminal OB domain KBU60_03035 PF04408 Helicase associated domain (HA2) KBU60_03035 PF00271 Helicase conserved C-terminal domain KBU60_03035 PF08482 ATP-dependent helicase C-terminal KBU60_03035 PF00270 DEAD/DEAH box helicase KBU60_03040 PF00912 Transglycosylase KBU60_03040 PF00905 Penicillin binding protein transpeptidase domain KBU60_03040 PF14814 Bifunctional transglycosylase second domain KBU60_03045 PF01734 Patatin-like phospholipase KBU60_03050 PF00330 Aconitase family (aconitate hydratase) KBU60_03050 PF06434 Aconitate hydratase 2 N-terminus KBU60_03050 PF11791 Aconitate B N-terminal domain KBU60_03055 PF06062 Uncharacterised protein family (UPF0231) KBU60_03060 PF00543 Nitrogen regulatory protein P-II KBU60_03065 PF00909 Ammonium Transporter Family KBU60_03070 PF13416 Bacterial extracellular solute-binding protein KBU60_03080 PF08402 TOBE domain KBU60_03080 PF00005 ABC transporter KBU60_03085 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KBU60_03085 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KBU60_03085 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KBU60_03085 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KBU60_03090 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain KBU60_03090 PF06165 Glycosyltransferase family 36 KBU60_03095 PF02838 Glycosyl hydrolase family 20, domain 2 KBU60_03095 PF00728 Glycosyl hydrolase family 20, catalytic domain KBU60_03100 PF01869 BadF/BadG/BcrA/BcrD ATPase family KBU60_03110 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KBU60_03110 PF00005 ABC transporter KBU60_03115 PF00005 ABC transporter KBU60_03115 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KBU60_03120 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_03120 PF12911 N-terminal TM domain of oligopeptide transport permease C KBU60_03125 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_03130 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KBU60_03135 PF00512 His Kinase A (phospho-acceptor) domain KBU60_03135 PF00497 Bacterial extracellular solute-binding proteins, family 3 KBU60_03135 PF00072 Response regulator receiver domain KBU60_03135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_03140 PF08468 Methyltransferase small domain N-terminal KBU60_03140 PF05175 Methyltransferase small domain KBU60_03145 PF01594 AI-2E family transporter KBU60_03150 PF00202 Aminotransferase class-III KBU60_03155 PF01521 Iron-sulphur cluster biosynthesis KBU60_03165 PF00873 AcrB/AcrD/AcrF family KBU60_03170 PF08525 Opacity-associated protein A N-terminal motif KBU60_03170 PF01551 Peptidase family M23 KBU60_03170 PF01476 LysM domain KBU60_03175 PF00579 tRNA synthetases class I (W and Y) KBU60_03185 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family KBU60_03190 PF13609 Gram-negative porin KBU60_03195 PF01272 Transcription elongation factor, GreA/GreB, C-term KBU60_03195 PF03449 Transcription elongation factor, N-terminal KBU60_03200 PF01985 CRS1 / YhbY (CRM) domain KBU60_03205 PF01728 FtsJ-like methyltransferase KBU60_03210 PF06480 FtsH Extracellular KBU60_03210 PF17862 AAA+ lid domain KBU60_03210 PF01434 Peptidase family M41 KBU60_03210 PF00004 ATPase family associated with various cellular activities (AAA) KBU60_03215 PF00809 Pterin binding enzyme KBU60_03220 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KBU60_03220 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KBU60_03220 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KBU60_03220 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KBU60_03225 PF03840 Preprotein translocase SecG subunit KBU60_03240 PF02576 RimP N-terminal domain KBU60_03240 PF17384 RimP C-terminal SH3 domain KBU60_03245 PF13184 NusA-like KH domain KBU60_03245 PF08529 NusA N-terminal domain KBU60_03245 PF00575 S1 RNA binding domain KBU60_03250 PF00009 Elongation factor Tu GTP binding domain KBU60_03250 PF04760 Translation initiation factor IF-2, N-terminal region KBU60_03250 PF11987 Translation-initiation factor 2 KBU60_03250 PF08364 Bacterial translation initiation factor IF-2 associated region KBU60_03255 PF02033 Ribosome-binding factor A KBU60_03260 PF16198 tRNA pseudouridylate synthase B C-terminal domain KBU60_03260 PF01509 TruB family pseudouridylate synthase (N terminal domain) KBU60_03260 PF09157 Pseudouridine synthase II TruB, C-terminal KBU60_03265 PF00312 Ribosomal protein S15 KBU60_03270 PF00575 S1 RNA binding domain KBU60_03270 PF03725 3' exoribonuclease family, domain 2 KBU60_03270 PF01138 3' exoribonuclease family, domain 1 KBU60_03270 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain KBU60_03270 PF00013 KH domain KBU60_03275 PF13181 Tetratricopeptide repeat KBU60_03275 PF07719 Tetratricopeptide repeat KBU60_03285 PF01554 MatE KBU60_03290 PF01136 Peptidase family U32 KBU60_03295 PF01136 Peptidase family U32 KBU60_03300 PF03707 Bacterial signalling protein N terminal repeat KBU60_03300 PF00990 Diguanylate cyclase, GGDEF domain KBU60_03300 PF00563 EAL domain KBU60_03305 PF02036 SCP-2 sterol transfer family KBU60_03310 PF13508 Acetyltransferase (GNAT) domain KBU60_03330 PF00009 Elongation factor Tu GTP binding domain KBU60_03330 PF03144 Elongation factor Tu domain 2 KBU60_03330 PF16658 Class II release factor RF3, C-terminal domain KBU60_03340 PF01026 TatD related DNase KBU60_03345 PF07662 Na+ dependent nucleoside transporter C-terminus KBU60_03345 PF07670 Nucleoside recognition KBU60_03345 PF01773 Na+ dependent nucleoside transporter N-terminus KBU60_03350 PF01791 DeoC/LacD family aldolase KBU60_03355 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain KBU60_03355 PF00591 Glycosyl transferase family, a/b domain KBU60_03355 PF02885 Glycosyl transferase family, helical bundle domain KBU60_03360 PF01676 Metalloenzyme superfamily KBU60_03365 PF01048 Phosphorylase superfamily KBU60_03375 PF18429 Domain of unknown function (DUF5609) KBU60_03385 PF18073 Rubredoxin metal binding domain KBU60_03390 PF03144 Elongation factor Tu domain 2 KBU60_03390 PF14492 Elongation Factor G, domain II KBU60_03390 PF03764 Elongation factor G, domain IV KBU60_03390 PF00009 Elongation factor Tu GTP binding domain KBU60_03390 PF00679 Elongation factor G C-terminus KBU60_03395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_03395 PF03466 LysR substrate binding domain KBU60_03405 PF00501 AMP-binding enzyme KBU60_03410 PF02805 Metal binding domain of Ada KBU60_03410 PF12833 Helix-turn-helix domain KBU60_03435 PF04972 BON domain KBU60_03435 PF00263 Bacterial type II and III secretion system protein KBU60_03435 PF13629 Pilus formation protein N terminal region KBU60_03465 PF00437 Type II/IV secretion system protein KBU60_03495 PF03466 LysR substrate binding domain KBU60_03495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_03500 PF13520 Amino acid permease KBU60_03505 PF04074 YhcH/YjgK/YiaL KBU60_03510 PF16353 Domain of unknown function(DUF4981) KBU60_03510 PF00703 Glycosyl hydrolases family 2 KBU60_03510 PF02929 Beta galactosidase small chain KBU60_03510 PF02837 Glycosyl hydrolases family 2, sugar binding domain KBU60_03510 PF02836 Glycosyl hydrolases family 2, TIM barrel domain KBU60_03515 PF00356 Bacterial regulatory proteins, lacI family KBU60_03520 PF16363 GDP-mannose 4,6 dehydratase KBU60_03525 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain KBU60_03525 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain KBU60_03530 PF00288 GHMP kinases N terminal domain KBU60_03530 PF10509 Galactokinase galactose-binding signature KBU60_03530 PF08544 GHMP kinases C terminal KBU60_03535 PF01263 Aldose 1-epimerase KBU60_03540 PF00356 Bacterial regulatory proteins, lacI family KBU60_03555 PF00356 Bacterial regulatory proteins, lacI family KBU60_03560 PF01588 Putative tRNA binding domain KBU60_03575 PF01544 CorA-like Mg2+ transporter protein KBU60_03580 PF01266 FAD dependent oxidoreductase KBU60_03580 PF16901 C-terminal domain of alpha-glycerophosphate oxidase KBU60_03585 PF08220 DeoR-like helix-turn-helix domain KBU60_03585 PF00455 DeoR C terminal sensor domain KBU60_03590 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KBU60_03590 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KBU60_03595 PF00230 Major intrinsic protein KBU60_03600 PF07690 Major Facilitator Superfamily KBU60_03605 PF03009 Glycerophosphoryl diester phosphodiesterase family KBU60_03610 PF14602 Hexapeptide repeat of succinyl-transferase KBU60_03610 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle KBU60_03615 PF07130 YebG protein KBU60_03620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_03620 PF03466 LysR substrate binding domain KBU60_03630 PF00884 Sulfatase KBU60_03630 PF11893 Domain of unknown function (DUF3413) KBU60_03635 PF17946 RecC C-terminal domain KBU60_03640 PF12705 PD-(D/E)XK nuclease superfamily KBU60_03640 PF00580 UvrD/REP helicase N-terminal domain KBU60_03640 PF13361 UvrD-like helicase C-terminal domain KBU60_03645 PF13538 UvrD-like helicase C-terminal domain KBU60_03655 PF00583 Acetyltransferase (GNAT) family KBU60_03655 PF00696 Amino acid kinase family KBU60_03665 PF06725 3D domain KBU60_03665 PF03562 MltA specific insert domain KBU60_03670 PF00899 ThiF family KBU60_03675 PF02657 Fe-S metabolism associated domain KBU60_03680 PF00990 Diguanylate cyclase, GGDEF domain KBU60_03680 PF17158 Membrane-associated sensor, integral membrane domain KBU60_03685 PF00266 Aminotransferase class-V KBU60_03690 PF01965 DJ-1/PfpI family KBU60_03695 PF02558 Ketopantoate reductase PanE/ApbA KBU60_03695 PF08546 Ketopantoate reductase PanE/ApbA C terminal KBU60_03700 PF03502 Nucleoside-specific channel-forming protein, Tsx KBU60_03720 PF04542 Sigma-70 region 2 KBU60_03720 PF04545 Sigma-70, region 4 KBU60_03730 PF07690 Major Facilitator Superfamily KBU60_03735 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KBU60_03740 PF03923 Uncharacterized lipoprotein KBU60_03740 PF08139 Prokaryotic membrane lipoprotein lipid attachment site KBU60_03745 PF05175 Methyltransferase small domain KBU60_03750 PF01722 BolA-like protein KBU60_03755 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) KBU60_03755 PF11973 NQRA C-terminal domain KBU60_03760 PF03116 NQR2, RnfD, RnfE family KBU60_03765 PF04205 FMN-binding domain KBU60_03770 PF02508 Rnf-Nqr subunit, membrane protein KBU60_03775 PF02508 Rnf-Nqr subunit, membrane protein KBU60_03780 PF00970 Oxidoreductase FAD-binding domain KBU60_03780 PF00111 2Fe-2S iron-sulfur cluster binding domain KBU60_03780 PF00175 Oxidoreductase NAD-binding domain KBU60_03785 PF02424 ApbE family KBU60_03825 PF13302 Acetyltransferase (GNAT) domain KBU60_03840 PF03466 LysR substrate binding domain KBU60_03840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_03845 PF00135 Carboxylesterase family KBU60_03850 PF03466 LysR substrate binding domain KBU60_03850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_03855 PF11798 IMS family HHH motif KBU60_03855 PF11799 impB/mucB/samB family C-terminal domain KBU60_03855 PF00817 impB/mucB/samB family KBU60_03855 PF13438 Domain of unknown function (DUF4113) KBU60_03860 PF00717 Peptidase S24-like KBU60_03905 PF00817 impB/mucB/samB family KBU60_03905 PF11799 impB/mucB/samB family C-terminal domain KBU60_03905 PF11798 IMS family HHH motif KBU60_03910 PF00817 impB/mucB/samB family KBU60_03910 PF11799 impB/mucB/samB family C-terminal domain KBU60_03910 PF11798 IMS family HHH motif KBU60_03915 PF00270 DEAD/DEAH box helicase KBU60_03915 PF09382 RQC domain KBU60_03915 PF16124 RecQ zinc-binding KBU60_03915 PF00570 HRDC domain KBU60_03915 PF00271 Helicase conserved C-terminal domain KBU60_03920 PF03449 Transcription elongation factor, N-terminal KBU60_03920 PF01272 Transcription elongation factor, GreA/GreB, C-term KBU60_03935 PF00209 Sodium:neurotransmitter symporter family KBU60_03945 PF06786 Uncharacterised protein family (UPF0253) KBU60_03955 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KBU60_03955 PF03129 Anticodon binding domain KBU60_03955 PF04073 Aminoacyl-tRNA editing domain KBU60_03960 PF18389 TrmO C-terminal domain KBU60_03960 PF01980 tRNA-methyltransferase O KBU60_03965 PF01197 Ribosomal protein L31 KBU60_03970 PF00444 Ribosomal protein L36 KBU60_03975 PF03806 AbgT putative transporter family KBU60_03980 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 KBU60_04005 PF04287 tRNA pseudouridine synthase C KBU60_04010 PF00849 RNA pseudouridylate synthase KBU60_04015 PF11944 Protein of unknown function (DUF3461) KBU60_04020 PF01842 ACT domain KBU60_04020 PF08335 GlnD PII-uridylyltransferase KBU60_04020 PF01966 HD domain KBU60_04020 PF01909 Nucleotidyltransferase domain KBU60_04025 PF00557 Metallopeptidase family M24 KBU60_04030 PF00318 Ribosomal protein S2 KBU60_04035 PF00889 Elongation factor TS KBU60_04040 PF00696 Amino acid kinase family KBU60_04045 PF01765 Ribosome recycling factor KBU60_04050 PF01255 Putative undecaprenyl diphosphate synthase KBU60_04060 PF13288 DXP reductoisomerase C-terminal domain KBU60_04060 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase KBU60_04060 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain KBU60_04065 PF02163 Peptidase family M50 KBU60_04065 PF17820 PDZ domain KBU60_04070 PF01103 Surface antigen KBU60_04070 PF07244 Surface antigen variable number repeat KBU60_04075 PF03938 Outer membrane protein (OmpH-like) KBU60_04080 PF00132 Bacterial transferase hexapeptide (six repeats) KBU60_04080 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD KBU60_04085 PF07977 FabA-like domain KBU60_04090 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 KBU60_04090 PF00132 Bacterial transferase hexapeptide (six repeats) KBU60_04095 PF02684 Lipid-A-disaccharide synthetase KBU60_04100 PF01351 Ribonuclease HII KBU60_04105 PF02811 PHP domain KBU60_04105 PF01336 OB-fold nucleic acid binding domain KBU60_04105 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KBU60_04105 PF07733 Bacterial DNA polymerase III alpha NTPase domain KBU60_04105 PF14579 Helix-hairpin-helix motif KBU60_04110 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit KBU60_04115 PF01171 PP-loop family KBU60_04115 PF09179 TilS substrate binding domain KBU60_04115 PF11734 TilS substrate C-terminal domain KBU60_04120 PF00034 Cytochrome c KBU60_04125 PF00543 Nitrogen regulatory protein P-II KBU60_04130 PF03372 Endonuclease/Exonuclease/phosphatase family KBU60_04140 PF01476 LysM domain KBU60_04140 PF01464 Transglycosylase SLT domain KBU60_04145 PF00753 Metallo-beta-lactamase superfamily KBU60_04145 PF16123 Hydroxyacylglutathione hydrolase C-terminus KBU60_04150 PF08241 Methyltransferase domain KBU60_04155 PF00075 RNase H KBU60_04160 PF00929 Exonuclease KBU60_04170 PF01740 STAS domain KBU60_04170 PF00916 Sulfate permease family KBU60_04175 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KBU60_04175 PF02770 Acyl-CoA dehydrogenase, middle domain KBU60_04175 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KBU60_04175 PF09317 Domain of unknown function (DUF1974) KBU60_04180 PF13580 SIS domain KBU60_04185 PF13230 Glutamine amidotransferases class-II KBU60_04190 PF00551 Formyl transferase KBU60_04195 PF00586 AIR synthase related protein, N-terminal domain KBU60_04195 PF02769 AIR synthase related protein, C-terminal domain KBU60_04205 PF00860 Permease family KBU60_04220 PF03358 NADPH-dependent FMN reductase KBU60_04225 PF03960 ArsC family KBU60_04230 PF13181 Tetratricopeptide repeat KBU60_04230 PF01435 Peptidase family M48 KBU60_04240 PF01594 AI-2E family transporter KBU60_04245 PF00578 AhpC/TSA family KBU60_04250 PF01842 ACT domain KBU60_04255 PF00701 Dihydrodipicolinate synthetase family KBU60_04260 PF06804 NlpB/DapX lipoprotein KBU60_04275 PF07687 Peptidase dimerisation domain KBU60_04275 PF01546 Peptidase family M20/M25/M40 KBU60_04280 PF03960 ArsC family KBU60_04300 PF11143 Protein of unknown function (DUF2919) KBU60_04305 PF04261 Dyp-type peroxidase family KBU60_04310 PF00700 Bacterial flagellin C-terminal helical region KBU60_04310 PF00669 Bacterial flagellin N-terminal helical region KBU60_04310 PF07196 Flagellin hook IN motif KBU60_04315 PF00700 Bacterial flagellin C-terminal helical region KBU60_04315 PF07196 Flagellin hook IN motif KBU60_04315 PF00669 Bacterial flagellin N-terminal helical region KBU60_04320 PF00700 Bacterial flagellin C-terminal helical region KBU60_04320 PF00669 Bacterial flagellin N-terminal helical region KBU60_04320 PF07196 Flagellin hook IN motif KBU60_04325 PF03646 FlaG protein KBU60_04330 PF07196 Flagellin hook IN motif KBU60_04330 PF07195 Flagellar hook-associated protein 2 C-terminus KBU60_04330 PF02465 Flagellar hook-associated protein 2 N-terminus KBU60_04340 PF02561 Flagellar protein FliS KBU60_04345 PF06490 Flagellar regulatory protein FleQ KBU60_04345 PF00158 Sigma-54 interaction domain KBU60_04345 PF02954 Bacterial regulatory protein, Fis family KBU60_04350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_04350 PF00512 His Kinase A (phospho-acceptor) domain KBU60_04350 PF13188 PAS domain KBU60_04355 PF02954 Bacterial regulatory protein, Fis family KBU60_04355 PF00072 Response regulator receiver domain KBU60_04355 PF00158 Sigma-54 interaction domain KBU60_04360 PF02049 Flagellar hook-basal body complex protein FliE KBU60_04365 PF08345 Flagellar M-ring protein C-terminal KBU60_04365 PF01514 Secretory protein of YscJ/FliF family KBU60_04370 PF01706 FliG C-terminal domain KBU60_04370 PF14841 FliG middle domain KBU60_04370 PF14842 FliG N-terminal domain KBU60_04380 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KBU60_04380 PF18269 T3SS EscN ATPase C-terminal domain KBU60_04400 PF02154 Flagellar motor switch protein FliM KBU60_04400 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term KBU60_04405 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term KBU60_04410 PF04347 Flagellar biosynthesis protein, FliO KBU60_04415 PF00813 FliP family KBU60_04420 PF01313 Bacterial export proteins, family 3 KBU60_04425 PF01311 Bacterial export proteins, family 1 KBU60_04430 PF01312 FlhB HrpN YscU SpaS Family KBU60_04435 PF00771 FHIPEP family KBU60_04440 PF00448 SRP54-type protein, GTPase domain KBU60_04445 PF10609 NUBPL iron-transfer P-loop NTPase KBU60_04450 PF04545 Sigma-70, region 4 KBU60_04450 PF04542 Sigma-70 region 2 KBU60_04450 PF04539 Sigma-70 region 3 KBU60_04455 PF00072 Response regulator receiver domain KBU60_04460 PF04344 Chemotaxis phosphatase, CheZ KBU60_04465 PF00072 Response regulator receiver domain KBU60_04465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_04465 PF01627 Hpt domain KBU60_04465 PF01584 CheW-like domain KBU60_04465 PF02895 Signal transducing histidine kinase, homodimeric domain KBU60_04470 PF01339 CheB methylesterase KBU60_04470 PF00072 Response regulator receiver domain KBU60_04475 PF13614 AAA domain KBU60_04485 PF01584 CheW-like domain KBU60_04495 PF00005 ABC transporter KBU60_04500 PF03379 CcmB protein KBU60_04505 PF01578 Cytochrome C assembly protein KBU60_04510 PF04995 Heme exporter protein D (CcmD) KBU60_04515 PF03100 CcmE KBU60_04520 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal KBU60_04520 PF01578 Cytochrome C assembly protein KBU60_04525 PF08534 Redoxin KBU60_04530 PF03918 Cytochrome C biogenesis protein KBU60_04540 PF04333 MlaA lipoprotein KBU60_04545 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) KBU60_04550 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) KBU60_04560 PF04542 Sigma-70 region 2 KBU60_04560 PF08281 Sigma-70, region 4 KBU60_04565 PF02803 Thiolase, C-terminal domain KBU60_04565 PF00108 Thiolase, N-terminal domain KBU60_04570 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KBU60_04570 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KBU60_04570 PF00378 Enoyl-CoA hydratase/isomerase KBU60_04580 PF00675 Insulinase (Peptidase family M16) KBU60_04580 PF05193 Peptidase M16 inactive domain KBU60_04580 PF16187 Middle or third domain of peptidase_M16 KBU60_04585 PF00300 Histidine phosphatase superfamily (branch 1) KBU60_04590 PF01713 Smr domain KBU60_04595 PF05175 Methyltransferase small domain KBU60_04600 PF01264 Chorismate synthase KBU60_04605 PF03458 UPF0126 domain KBU60_04610 PF04315 Elongation factor P hydroxylase KBU60_04615 PF08891 YfcL protein KBU60_04620 PF03358 NADPH-dependent FMN reductase KBU60_04625 PF01266 FAD dependent oxidoreductase KBU60_04625 PF05430 S-adenosyl-L-methionine-dependent methyltransferase KBU60_04630 PF02801 Beta-ketoacyl synthase, C-terminal domain KBU60_04630 PF00109 Beta-ketoacyl synthase, N-terminal domain KBU60_04635 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KBU60_04635 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KBU60_04635 PF11890 Domain of unknown function (DUF3410) KBU60_04640 PF01118 Semialdehyde dehydrogenase, NAD binding domain KBU60_04640 PF02774 Semialdehyde dehydrogenase, dimerisation domain KBU60_04650 PF01416 tRNA pseudouridine synthase KBU60_04655 PF01039 Carboxyl transferase domain KBU60_04655 PF17848 Acetyl-coA carboxylase zinc finger domain KBU60_04660 PF02875 Mur ligase family, glutamate ligase domain KBU60_04660 PF08245 Mur ligase middle domain KBU60_04665 PF05036 Sporulation related domain KBU60_04670 PF02674 Colicin V production protein KBU60_04675 PF00156 Phosphoribosyl transferase domain KBU60_04680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_04680 PF03466 LysR substrate binding domain KBU60_04685 PF00072 Response regulator receiver domain KBU60_04690 PF04304 Protein of unknown function (DUF454) KBU60_04695 PF00156 Phosphoribosyl transferase domain KBU60_04700 PF12169 DNA polymerase III subunits gamma and tau domain III KBU60_04700 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding KBU60_04700 PF12170 DNA polymerase III tau subunit V interacting with alpha KBU60_04705 PF02575 YbaB/EbfC DNA-binding family KBU60_04710 PF02132 RecR protein KBU60_04710 PF13662 Toprim domain KBU60_04715 PF00230 Major intrinsic protein KBU60_04725 PF01042 Endoribonuclease L-PSP KBU60_04730 PF03313 Serine dehydratase alpha chain KBU60_04740 PF03692 Putative zinc- or iron-chelating domain KBU60_04745 PF04226 Transglycosylase associated protein KBU60_04750 PF03692 Putative zinc- or iron-chelating domain KBU60_04755 PF00924 Mechanosensitive ion channel KBU60_04755 PF05552 Conserved TM helix KBU60_04760 PF03992 Antibiotic biosynthesis monooxygenase KBU60_04765 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KBU60_04775 PF00245 Alkaline phosphatase KBU60_04790 PF13847 Methyltransferase domain KBU60_04795 PF00672 HAMP domain KBU60_04795 PF02743 Cache domain KBU60_04795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KBU60_04800 PF01263 Aldose 1-epimerase KBU60_04805 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KBU60_04805 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KBU60_04810 PF01641 SelR domain KBU60_04820 PF07023 Protein of unknown function (DUF1315) KBU60_04825 PF00710 Asparaginase, N-terminal KBU60_04825 PF17763 Glutaminase/Asparaginase C-terminal domain KBU60_04830 PF01343 Peptidase family S49 KBU60_04835 PF07992 Pyridine nucleotide-disulphide oxidoreductase KBU60_04835 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KBU60_04840 PF00881 Nitroreductase family KBU60_04845 PF01131 DNA topoisomerase KBU60_04845 PF01751 Toprim domain KBU60_04855 PF00106 short chain dehydrogenase KBU60_04860 PF00850 Histone deacetylase domain KBU60_04870 PF00884 Sulfatase KBU60_04870 PF11893 Domain of unknown function (DUF3413) KBU60_04875 PF07208 Protein of unknown function (DUF1414) KBU60_04880 PF04245 37-kD nucleoid-associated bacterial protein KBU60_04895 PF03553 Na+/H+ antiporter family KBU60_04900 PF01118 Semialdehyde dehydrogenase, NAD binding domain KBU60_04900 PF02774 Semialdehyde dehydrogenase, dimerisation domain KBU60_04905 PF00520 Ion transport protein KBU60_04905 PF00027 Cyclic nucleotide-binding domain KBU60_04910 PF01914 MarC family integral membrane protein KBU60_04915 PF00465 Iron-containing alcohol dehydrogenase KBU60_04915 PF00171 Aldehyde dehydrogenase family KBU60_04930 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KBU60_04930 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KBU60_04935 PF00462 Glutaredoxin KBU60_04945 PF03553 Na+/H+ antiporter family KBU60_04945 PF13726 Na+-H+ antiporter family KBU60_04950 PF00929 Exonuclease KBU60_04955 PF18393 MotY N-terminal domain KBU60_04955 PF00691 OmpA family KBU60_04960 PF10952 Protein of unknown function (DUF2753) KBU60_04965 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KBU60_04970 PF10576 Iron-sulfur binding domain of endonuclease III KBU60_04970 PF00633 Helix-hairpin-helix motif KBU60_04970 PF00730 HhH-GPD superfamily base excision DNA repair protein KBU60_04975 PF02508 Rnf-Nqr subunit, membrane protein KBU60_04980 PF04205 FMN-binding domain KBU60_04985 PF03116 NQR2, RnfD, RnfE family KBU60_04990 PF13375 RnfC Barrel sandwich hybrid domain KBU60_04990 PF10531 SLBB domain KBU60_04990 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit KBU60_04990 PF12838 4Fe-4S dicluster domain KBU60_04995 PF04060 Putative Fe-S cluster KBU60_05000 PF02508 Rnf-Nqr subunit, membrane protein KBU60_05010 PF17757 UvrB interaction domain KBU60_05010 PF02151 UvrB/uvrC motif KBU60_05010 PF00271 Helicase conserved C-terminal domain KBU60_05010 PF12344 Ultra-violet resistance protein B KBU60_05010 PF04851 Type III restriction enzyme, res subunit KBU60_05015 PF02954 Bacterial regulatory protein, Fis family KBU60_05015 PF00158 Sigma-54 interaction domain KBU60_05015 PF00072 Response regulator receiver domain KBU60_05020 PF01627 Hpt domain KBU60_05025 PF01933 Uncharacterised protein family UPF0052 KBU60_05030 PF04055 Radical SAM superfamily KBU60_05030 PF06463 Molybdenum Cofactor Synthesis C KBU60_05035 PF00994 Probable molybdopterin binding domain KBU60_05040 PF01967 MoaC family KBU60_05045 PF02597 ThiS family KBU60_05050 PF02391 MoaE protein KBU60_05055 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KBU60_05060 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_05065 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_05065 PF12911 N-terminal TM domain of oligopeptide transport permease C KBU60_05070 PF00005 ABC transporter KBU60_05070 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KBU60_05075 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KBU60_05075 PF00005 ABC transporter KBU60_05080 PF13409 Glutathione S-transferase, N-terminal domain KBU60_05090 PF13194 Domain of unknown function (DUF4010) KBU60_05095 PF07085 DRTGG domain KBU60_05095 PF01515 Phosphate acetyl/butaryl transferase KBU60_05100 PF00871 Acetokinase family KBU60_05105 PF04217 Protein of unknown function, DUF412 KBU60_05115 PF02653 Branched-chain amino acid transport system / permease component KBU60_05120 PF00005 ABC transporter KBU60_05125 PF00128 Alpha amylase, catalytic domain KBU60_05125 PF02903 Alpha amylase, N-terminal ig-like domain KBU60_05130 PF00990 Diguanylate cyclase, GGDEF domain KBU60_05130 PF00072 Response regulator receiver domain KBU60_05135 PF01207 Dihydrouridine synthase (Dus) KBU60_05140 PF07517 SecA DEAD-like domain KBU60_05140 PF01043 SecA preprotein cross-linking domain KBU60_05140 PF07516 SecA Wing and Scaffold domain KBU60_05140 PF02810 SEC-C motif KBU60_05145 PF02600 Disulfide bond formation protein DsbB KBU60_05150 PF06450 Bacterial Na+/H+ antiporter B (NhaB) KBU60_05155 PF07840 FadR C-terminal domain KBU60_05155 PF00392 Bacterial regulatory proteins, gntR family KBU60_05165 PF09334 tRNA synthetases class I (M) KBU60_05165 PF01588 Putative tRNA binding domain KBU60_05170 PF10609 NUBPL iron-transfer P-loop NTPase KBU60_05175 PF00485 Phosphoribulokinase / Uridine kinase family KBU60_05185 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP KBU60_05185 PF12557 Cob(I)alamin adenosyltransferase N terminal KBU60_05190 PF01451 Low molecular weight phosphotyrosine protein phosphatase KBU60_05195 PF00916 Sulfate permease family KBU60_05195 PF01740 STAS domain KBU60_05200 PF12111 Polyribonucleotide phosphorylase C terminal KBU60_05200 PF10150 Ribonuclease E/G family KBU60_05200 PF00575 S1 RNA binding domain KBU60_05205 PF00849 RNA pseudouridylate synthase KBU60_05205 PF01479 S4 domain KBU60_05210 PF02545 Maf-like protein KBU60_05215 PF02620 Large ribosomal RNA subunit accumulation protein YceD KBU60_05220 PF01783 Ribosomal L32p protein family KBU60_05225 PF02504 Fatty acid synthesis protein KBU60_05230 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KBU60_05230 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KBU60_05235 PF00698 Acyl transferase domain KBU60_05245 PF00550 Phosphopantetheine attachment site KBU60_05250 PF02801 Beta-ketoacyl synthase, C-terminal domain KBU60_05250 PF00109 Beta-ketoacyl synthase, N-terminal domain KBU60_05255 PF01063 Amino-transferase class IV KBU60_05260 PF02618 YceG-like family KBU60_05265 PF02223 Thymidylate kinase KBU60_05270 PF09115 DNA polymerase III, delta subunit, C terminal KBU60_05275 PF01026 TatD related DNase KBU60_05280 PF02378 Phosphotransferase system, EIIC KBU60_05280 PF00367 phosphotransferase system, EIIB KBU60_05295 PF00209 Sodium:neurotransmitter symporter family KBU60_05310 PF01734 Patatin-like phospholipase KBU60_05315 PF00224 Pyruvate kinase, barrel domain KBU60_05315 PF02887 Pyruvate kinase, alpha/beta domain KBU60_05320 PF00480 ROK family KBU60_05325 PF01584 CheW-like domain KBU60_05325 PF00072 Response regulator receiver domain KBU60_05330 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KBU60_05330 PF14579 Helix-hairpin-helix motif KBU60_05330 PF01336 OB-fold nucleic acid binding domain KBU60_05330 PF07733 Bacterial DNA polymerase III alpha NTPase domain KBU60_05330 PF02811 PHP domain KBU60_05345 PF00106 short chain dehydrogenase KBU60_05350 PF01343 Peptidase family S49 KBU60_05350 PF08496 Peptidase family S49 N-terminal KBU60_05355 PF02224 Cytidylate kinase KBU60_05360 PF00575 S1 RNA binding domain KBU60_05365 PF00216 Bacterial DNA-binding protein KBU60_05370 PF06305 Lipopolysaccharide assembly protein A domain KBU60_05375 PF18073 Rubredoxin metal binding domain KBU60_05380 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family KBU60_05385 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KBU60_05395 PF01370 NAD dependent epimerase/dehydratase family KBU60_05400 PF00535 Glycosyl transferase family 2 KBU60_05410 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase KBU60_05420 PF02470 MlaD protein KBU60_05425 PF04403 Paraquat-inducible protein A KBU60_05430 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KBU60_05435 PF00034 Cytochrome c KBU60_05440 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KBU60_05440 PF00384 Molybdopterin oxidoreductase KBU60_05440 PF01568 Molydopterin dinucleotide binding domain KBU60_05445 PF03916 Polysulphide reductase, NrfD KBU60_05450 PF13247 4Fe-4S dicluster domain KBU60_05455 PF00512 His Kinase A (phospho-acceptor) domain KBU60_05455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_05460 PF00196 Bacterial regulatory proteins, luxR family KBU60_05460 PF00072 Response regulator receiver domain KBU60_05465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_05465 PF03466 LysR substrate binding domain KBU60_05475 PF11412 Disulphide bond corrector protein DsbC KBU60_05475 PF02683 Cytochrome C biogenesis protein transmembrane region KBU60_05480 PF00085 Thioredoxin KBU60_05495 PF01938 TRAM domain KBU60_05495 PF05958 tRNA (Uracil-5-)-methyltransferase KBU60_05510 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KBU60_05520 PF00005 ABC transporter KBU60_05520 PF02687 FtsX-like permease family KBU60_05520 PF12704 MacB-like periplasmic core domain KBU60_05525 PF12704 MacB-like periplasmic core domain KBU60_05525 PF02687 FtsX-like permease family KBU60_05525 PF00005 ABC transporter KBU60_05530 PF00005 ABC transporter KBU60_05530 PF02687 FtsX-like permease family KBU60_05530 PF12704 MacB-like periplasmic core domain KBU60_05535 PF00857 Isochorismatase family KBU60_05540 PF02311 AraC-like ligand binding domain KBU60_05540 PF12833 Helix-turn-helix domain KBU60_05550 PF08267 Cobalamin-independent synthase, N-terminal domain KBU60_05550 PF01717 Cobalamin-independent synthase, Catalytic domain KBU60_05560 PF00529 HlyD membrane-fusion protein of T1SS KBU60_05560 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KBU60_05565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_05565 PF03466 LysR substrate binding domain KBU60_05585 PF00672 HAMP domain KBU60_05585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_05585 PF00512 His Kinase A (phospho-acceptor) domain KBU60_05590 PF00072 Response regulator receiver domain KBU60_05590 PF00486 Transcriptional regulatory protein, C terminal KBU60_05595 PF00672 HAMP domain KBU60_05595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KBU60_05600 PF11842 Domain of unknown function (DUF3362) KBU60_05600 PF04055 Radical SAM superfamily KBU60_05600 PF08497 Radical SAM N-terminal KBU60_05605 PF00990 Diguanylate cyclase, GGDEF domain KBU60_05605 PF01590 GAF domain KBU60_05605 PF00360 Phytochrome region KBU60_05605 PF00563 EAL domain KBU60_05620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_05620 PF03466 LysR substrate binding domain KBU60_05625 PF08267 Cobalamin-independent synthase, N-terminal domain KBU60_05625 PF01717 Cobalamin-independent synthase, Catalytic domain KBU60_05635 PF03795 YCII-related domain KBU60_05640 PF03061 Thioesterase superfamily KBU60_05645 PF04279 Intracellular septation protein A KBU60_05655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_05655 PF00072 Response regulator receiver domain KBU60_05660 PF17327 Acyl homoserine lactone synthase KBU60_05665 PF00375 Sodium:dicarboxylate symporter family KBU60_05670 PF13193 AMP-binding enzyme C-terminal domain KBU60_05670 PF00501 AMP-binding enzyme KBU60_05675 PF00027 Cyclic nucleotide-binding domain KBU60_05675 PF13545 Crp-like helix-turn-helix domain KBU60_05680 PF00290 Tryptophan synthase alpha chain KBU60_05685 PF00291 Pyridoxal-phosphate dependent enzyme KBU60_05690 PF00218 Indole-3-glycerol phosphate synthase KBU60_05690 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase KBU60_05695 PF00591 Glycosyl transferase family, a/b domain KBU60_05695 PF02885 Glycosyl transferase family, helical bundle domain KBU60_05700 PF00117 Glutamine amidotransferase class-I KBU60_05705 PF00425 chorismate binding enzyme KBU60_05705 PF04715 Anthranilate synthase component I, N terminal region KBU60_05710 PF08056 Tryptophan operon leader peptide KBU60_05715 PF02811 PHP domain KBU60_05720 PF01300 Telomere recombination KBU60_05730 PF00849 RNA pseudouridylate synthase KBU60_05730 PF01479 S4 domain KBU60_05735 PF04269 Protein of unknown function, DUF440 KBU60_05740 PF01132 Elongation factor P (EF-P) OB domain KBU60_05740 PF08207 Elongation factor P (EF-P) KOW-like domain KBU60_05740 PF09285 Elongation factor P, C-terminal KBU60_05750 PF00136 DNA polymerase family B KBU60_05750 PF03104 DNA polymerase family B, exonuclease domain KBU60_05755 PF00072 Response regulator receiver domain KBU60_05755 PF00196 Bacterial regulatory proteins, luxR family KBU60_05760 PF01541 GIY-YIG catalytic domain KBU60_05760 PF02151 UvrB/uvrC motif KBU60_05760 PF08459 UvrC Helix-hairpin-helix N-terminal KBU60_05765 PF01066 CDP-alcohol phosphatidyltransferase KBU60_05790 PF00202 Aminotransferase class-III KBU60_05795 PF16653 Saccharopine dehydrogenase C-terminal domain KBU60_05795 PF03435 Saccharopine dehydrogenase NADP binding domain KBU60_05800 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain KBU60_05815 PF00994 Probable molybdopterin binding domain KBU60_05825 PF00268 Ribonucleotide reductase, small chain KBU60_05830 PF02867 Ribonucleotide reductase, barrel domain KBU60_05830 PF03477 ATP cone domain KBU60_05830 PF00317 Ribonucleotide reductase, all-alpha domain KBU60_05840 PF00521 DNA gyrase/topoisomerase IV, subunit A KBU60_05840 PF03989 DNA gyrase C-terminal domain, beta-propeller KBU60_05855 PF02335 Cytochrome c552 KBU60_05865 PF13247 4Fe-4S dicluster domain KBU60_05870 PF03916 Polysulphide reductase, NrfD KBU60_05875 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal KBU60_05875 PF01578 Cytochrome C assembly protein KBU60_05880 PF08534 Redoxin KBU60_05885 PF03918 Cytochrome C biogenesis protein KBU60_05895 PF00925 GTP cyclohydrolase II KBU60_05920 PF03734 L,D-transpeptidase catalytic domain KBU60_05920 PF01471 Putative peptidoglycan binding domain KBU60_05925 PF05951 Bacterial protein of unknown function (DUF882) KBU60_05930 PF00753 Metallo-beta-lactamase superfamily KBU60_05945 PF03480 Bacterial extracellular solute-binding protein, family 7 KBU60_05955 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component KBU60_05960 PF07730 Histidine kinase KBU60_05960 PF17200 Single Cache domain 2 KBU60_05965 PF00196 Bacterial regulatory proteins, luxR family KBU60_05965 PF00072 Response regulator receiver domain KBU60_05970 PF01047 MarR family KBU60_05975 PF02028 BCCT, betaine/carnitine/choline family transporter KBU60_05980 PF00672 HAMP domain KBU60_05980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KBU60_06000 PF00155 Aminotransferase class I and II KBU60_06015 PF00155 Aminotransferase class I and II KBU60_06015 PF00392 Bacterial regulatory proteins, gntR family KBU60_06025 PF00152 tRNA synthetases class II (D, K and N) KBU60_06025 PF01336 OB-fold nucleic acid binding domain KBU60_06030 PF12729 Four helix bundle sensory module for signal transduction KBU60_06030 PF00672 HAMP domain KBU60_06030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KBU60_06035 PF01242 6-pyruvoyl tetrahydropterin synthase KBU60_06045 PF04940 Sensors of blue-light using FAD KBU60_06045 PF00563 EAL domain KBU60_06050 PF03313 Serine dehydratase alpha chain KBU60_06050 PF03315 Serine dehydratase beta chain KBU60_06055 PF03222 Tryptophan/tyrosine permease family KBU60_06060 PF00293 NUDIX domain KBU60_06070 PF00072 Response regulator receiver domain KBU60_06070 PF09308 LuxQ, periplasmic KBU60_06070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_06070 PF00512 His Kinase A (phospho-acceptor) domain KBU60_06075 PF00425 chorismate binding enzyme KBU60_06075 PF04715 Anthranilate synthase component I, N terminal region KBU60_06090 PF04317 YcjX-like family, DUF463 KBU60_06095 PF05128 Domain of unknown function (DUF697) KBU60_06100 PF00158 Sigma-54 interaction domain KBU60_06100 PF18024 Helix-turn-helix domain KBU60_06105 PF13302 Acetyltransferase (GNAT) domain KBU60_06120 PF00589 Phage integrase family KBU60_06120 PF13495 Phage integrase, N-terminal SAM-like domain KBU60_06435 PF13673 Acetyltransferase (GNAT) domain KBU60_06455 PF13276 HTH-like domain KBU60_06455 PF00665 Integrase core domain KBU60_06455 PF13333 Integrase core domain KBU60_06485 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KBU60_06585 PF13276 HTH-like domain KBU60_06585 PF13333 Integrase core domain KBU60_06585 PF00665 Integrase core domain KBU60_06635 PF13333 Integrase core domain KBU60_06635 PF00665 Integrase core domain KBU60_06635 PF13276 HTH-like domain KBU60_06660 PF01810 LysE type translocator KBU60_06665 PF13302 Acetyltransferase (GNAT) domain KBU60_06685 PF03553 Na+/H+ antiporter family KBU60_06690 PF00120 Glutamine synthetase, catalytic domain KBU60_06695 PF07722 Peptidase C26 KBU60_06700 PF07883 Cupin domain KBU60_06700 PF01381 Helix-turn-helix KBU60_06705 PF00171 Aldehyde dehydrogenase family KBU60_06710 PF01266 FAD dependent oxidoreductase KBU60_06715 PF00795 Carbon-nitrogen hydrolase KBU60_06720 PF04371 Porphyromonas-type peptidyl-arginine deiminase KBU60_06725 PF00171 Aldehyde dehydrogenase family KBU60_06730 PF00202 Aminotransferase class-III KBU60_06735 PF01368 DHH family KBU60_06735 PF02833 DHHA2 domain KBU60_06740 PF00563 EAL domain KBU60_06740 PF00196 Bacterial regulatory proteins, luxR family KBU60_06750 PF01411 tRNA synthetases class II (A) KBU60_06750 PF02272 DHHA1 domain KBU60_06750 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KBU60_06755 PF12833 Helix-turn-helix domain KBU60_06765 PF01047 MarR family KBU60_06770 PF04237 YjbR KBU60_06780 PF01928 CYTH domain KBU60_06790 PF12464 Maltose acetyltransferase KBU60_06790 PF00132 Bacterial transferase hexapeptide (six repeats) KBU60_06805 PF01627 Hpt domain KBU60_06805 PF00512 His Kinase A (phospho-acceptor) domain KBU60_06805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_06805 PF00672 HAMP domain KBU60_06805 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KBU60_06805 PF00072 Response regulator receiver domain KBU60_06810 PF00563 EAL domain KBU60_06810 PF00990 Diguanylate cyclase, GGDEF domain KBU60_06810 PF03707 Bacterial signalling protein N terminal repeat KBU60_06825 PF04204 Homoserine O-succinyltransferase KBU60_06835 PF13520 Amino acid permease KBU60_06840 PF03279 Bacterial lipid A biosynthesis acyltransferase KBU60_06845 PF02074 Carboxypeptidase Taq (M32) metallopeptidase KBU60_06850 PF01810 LysE type translocator KBU60_06860 PF01235 Sodium:alanine symporter family KBU60_06885 PF00884 Sulfatase KBU60_06890 PF08521 Two-component sensor kinase N-terminal KBU60_06890 PF00512 His Kinase A (phospho-acceptor) domain KBU60_06890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_06895 PF00486 Transcriptional regulatory protein, C terminal KBU60_06895 PF00072 Response regulator receiver domain KBU60_06915 PF00501 AMP-binding enzyme KBU60_06925 PF04069 Substrate binding domain of ABC-type glycine betaine transport system KBU60_06930 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_06935 PF00571 CBS domain KBU60_06935 PF00005 ABC transporter KBU60_06950 PF02028 BCCT, betaine/carnitine/choline family transporter KBU60_06955 PF00583 Acetyltransferase (GNAT) family KBU60_06960 PF00202 Aminotransferase class-III KBU60_06965 PF06339 Ectoine synthase KBU60_06970 PF00696 Amino acid kinase family KBU60_06970 PF13840 ACT domain KBU60_06985 PF00034 Cytochrome c KBU60_06985 PF03150 Di-haem cytochrome c peroxidase KBU60_07000 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KBU60_07015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_07015 PF00989 PAS fold KBU60_07015 PF17203 Single cache domain 3 KBU60_07015 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain KBU60_07020 PF12431 Transcriptional regulator KBU60_07020 PF00072 Response regulator receiver domain KBU60_07025 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain KBU60_07025 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain KBU60_07030 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase KBU60_07035 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain KBU60_07035 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KBU60_07055 PF01590 GAF domain KBU60_07055 PF02954 Bacterial regulatory protein, Fis family KBU60_07055 PF00158 Sigma-54 interaction domain KBU60_07060 PF00171 Aldehyde dehydrogenase family KBU60_07080 PF12833 Helix-turn-helix domain KBU60_07095 PF00263 Bacterial type II and III secretion system protein KBU60_07095 PF03958 Bacterial type II/III secretion system short domain KBU60_07100 PF16697 Inner membrane component of T3SS, cytoplasmic domain KBU60_07100 PF16693 Inner membrane component of T3SS, periplasmic domain KBU60_07110 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF KBU60_07115 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) KBU60_07125 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI KBU60_07130 PF01514 Secretory protein of YscJ/FliF family KBU60_07140 PF02108 Flagellar assembly protein FliH KBU60_07150 PF02661 Fic/DOC family KBU60_07180 PF12146 Serine aminopeptidase, S33 KBU60_07185 PF12146 Serine aminopeptidase, S33 KBU60_07190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_07190 PF03466 LysR substrate binding domain KBU60_07195 PF01312 FlhB HrpN YscU SpaS Family KBU60_07200 PF01311 Bacterial export proteins, family 1 KBU60_07205 PF01313 Bacterial export proteins, family 3 KBU60_07210 PF00813 FliP family KBU60_07215 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term KBU60_07230 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KBU60_07230 PF02874 ATP synthase alpha/beta family, beta-barrel domain KBU60_07230 PF18269 T3SS EscN ATPase C-terminal domain KBU60_07235 PF07201 HrpJ-like domain KBU60_07240 PF09059 TyeA KBU60_07260 PF00771 FHIPEP family KBU60_07265 PF09621 Type III secretion system regulator (LcrR) KBU60_07270 PF07216 LcrG protein KBU60_07275 PF04792 V antigen (LcrV) protein KBU60_07280 PF07720 Tetratricopeptide repeat KBU60_07290 PF05844 YopD protein KBU60_07300 PF01925 Sulfite exporter TauE/SafE KBU60_07305 PF01970 Tripartite tricarboxylate transporter TctA family KBU60_07335 PF00285 Citrate synthase, C-terminal domain KBU60_07340 PF00330 Aconitase family (aconitate hydratase) KBU60_07340 PF00694 Aconitase C-terminal domain KBU60_07345 PF04303 PrpF protein KBU60_07350 PF16177 Acetyl-coenzyme A synthetase N-terminus KBU60_07350 PF13193 AMP-binding enzyme C-terminal domain KBU60_07350 PF00501 AMP-binding enzyme KBU60_07360 PF00089 Trypsin KBU60_07375 PF04055 Radical SAM superfamily KBU60_07380 PF06508 Queuosine biosynthesis protein QueC KBU60_07385 PF17158 Membrane-associated sensor, integral membrane domain KBU60_07385 PF00990 Diguanylate cyclase, GGDEF domain KBU60_07395 PF00691 OmpA family KBU60_07395 PF05736 OprF membrane domain KBU60_07410 PF00691 OmpA family KBU60_07410 PF05736 OprF membrane domain KBU60_07425 PF10672 S-adenosylmethionine-dependent methyltransferase KBU60_07425 PF17785 PUA-like domain KBU60_07430 PF02743 Cache domain KBU60_07430 PF00672 HAMP domain KBU60_07430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KBU60_07435 PF00708 Acylphosphatase KBU60_07440 PF04358 DsrC like protein KBU60_07450 PF01027 Inhibitor of apoptosis-promoting Bax1 KBU60_07455 PF00005 ABC transporter KBU60_07460 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_07465 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_07470 PF00497 Bacterial extracellular solute-binding proteins, family 3 KBU60_07475 PF10414 Sirohaem synthase dimerisation region KBU60_07475 PF14824 Sirohaem biosynthesis protein central KBU60_07475 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KBU60_07480 PF04461 Protein of unknown function (DUF520) KBU60_07485 PF00793 DAHP synthetase I family KBU60_07505 PF01189 16S rRNA methyltransferase RsmB/F KBU60_07505 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF KBU60_07505 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF KBU60_07510 PF02470 MlaD protein KBU60_07515 PF04403 Paraquat-inducible protein A KBU60_07520 PF00664 ABC transporter transmembrane region KBU60_07520 PF00005 ABC transporter KBU60_07525 PF13185 GAF domain KBU60_07530 PF17516 ProQ C-terminal domain KBU60_07530 PF04352 ProQ/FINO family KBU60_07535 PF11818 C-terminal domain of tail specific protease (DUF3340) KBU60_07535 PF17804 Tail specific protease N-terminal domain KBU60_07535 PF03572 Peptidase family S41 KBU60_07535 PF00595 PDZ domain KBU60_07545 PF01433 Peptidase family M1 domain KBU60_07545 PF11940 Domain of unknown function (DUF3458) Ig-like fold KBU60_07545 PF17432 Domain of unknown function (DUF3458_C) ARM repeats KBU60_07555 PF05088 Bacterial NAD-glutamate dehydrogenase KBU60_07560 PF01180 Dihydroorotate dehydrogenase KBU60_07565 PF07126 Cell-division protein ZapC KBU60_07570 PF10672 S-adenosylmethionine-dependent methyltransferase KBU60_07570 PF02926 THUMP domain KBU60_07570 PF01170 Putative RNA methylase family UPF0020 KBU60_07580 PF16326 ABC transporter C-terminal domain KBU60_07580 PF00005 ABC transporter KBU60_07580 PF12848 ABC transporter KBU60_07590 PF04957 Ribosome modulation factor KBU60_07595 PF07977 FabA-like domain KBU60_07600 PF05362 Lon protease (S16) C-terminal proteolytic domain KBU60_07600 PF13654 AAA domain KBU60_07605 PF06303 MatP N-terminal domain KBU60_07605 PF17414 MatP C-terminal ribbon-helix-helix domain KBU60_07690 PF05707 Zonular occludens toxin (Zot) KBU60_07765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_07765 PF00512 His Kinase A (phospho-acceptor) domain KBU60_07765 PF09308 LuxQ, periplasmic KBU60_07765 PF00072 Response regulator receiver domain KBU60_07780 PF00115 Cytochrome C and Quinol oxidase polypeptide I KBU60_07795 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KBU60_07795 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP KBU60_07805 PF00403 Heavy-metal-associated domain KBU60_07820 PF00027 Cyclic nucleotide-binding domain KBU60_07820 PF13545 Crp-like helix-turn-helix domain KBU60_07825 PF00582 Universal stress protein family KBU60_07830 PF01171 PP-loop family KBU60_07850 PF08402 TOBE domain KBU60_07850 PF00005 ABC transporter KBU60_07855 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_07860 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_07865 PF13416 Bacterial extracellular solute-binding protein KBU60_07870 PF13416 Bacterial extracellular solute-binding protein KBU60_07875 PF02146 Sir2 family KBU60_07885 PF00909 Ammonium Transporter Family KBU60_07910 PF13247 4Fe-4S dicluster domain KBU60_07915 PF01568 Molydopterin dinucleotide binding domain KBU60_07915 PF00384 Molybdopterin oxidoreductase KBU60_07915 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KBU60_07925 PF02613 Nitrate reductase delta subunit KBU60_07945 PF02634 FdhD/NarQ family KBU60_07950 PF12848 ABC transporter KBU60_07950 PF00005 ABC transporter KBU60_07955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_07955 PF00512 His Kinase A (phospho-acceptor) domain KBU60_07960 PF00072 Response regulator receiver domain KBU60_07960 PF00158 Sigma-54 interaction domain KBU60_07960 PF02954 Bacterial regulatory protein, Fis family KBU60_07965 PF12849 PBP superfamily domain KBU60_07970 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_07975 PF00005 ABC transporter KBU60_07975 PF08402 TOBE domain KBU60_07980 PF12804 MobA-like NTP transferase domain KBU60_07985 PF00994 Probable molybdopterin binding domain KBU60_07985 PF03454 MoeA C-terminal region (domain IV) KBU60_07985 PF03453 MoeA N-terminal region (domain I and II) KBU60_07995 PF00480 ROK family KBU60_08000 PF03942 DTW domain KBU60_08035 PF17202 Single cache domain 3 KBU60_08035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KBU60_08035 PF00672 HAMP domain KBU60_08040 PF00877 NlpC/P60 family KBU60_08050 PF05230 MASE2 domain KBU60_08050 PF00990 Diguanylate cyclase, GGDEF domain KBU60_08055 PF01339 CheB methylesterase KBU60_08055 PF00072 Response regulator receiver domain KBU60_08060 PF03881 Fructosamine kinase KBU60_08070 PF00677 Lumazine binding domain KBU60_08075 PF01554 MatE KBU60_08085 PF01068 ATP dependent DNA ligase domain KBU60_08085 PF14743 DNA ligase OB-like domain KBU60_08090 PF01740 STAS domain KBU60_08100 PF10531 SLBB domain KBU60_08100 PF02563 Polysaccharide biosynthesis/export protein KBU60_08115 PF00072 Response regulator receiver domain KBU60_08115 PF02954 Bacterial regulatory protein, Fis family KBU60_08115 PF00158 Sigma-54 interaction domain KBU60_08120 PF13439 Glycosyltransferase Family 4 KBU60_08120 PF00534 Glycosyl transferases group 1 KBU60_08125 PF00534 Glycosyl transferases group 1 KBU60_08125 PF13439 Glycosyltransferase Family 4 KBU60_08155 PF13439 Glycosyltransferase Family 4 KBU60_08155 PF00534 Glycosyl transferases group 1 KBU60_08160 PF00535 Glycosyl transferase family 2 KBU60_08165 PF02397 Bacterial sugar transferase KBU60_08175 PF02028 BCCT, betaine/carnitine/choline family transporter KBU60_08190 PF00270 DEAD/DEAH box helicase KBU60_08190 PF04408 Helicase associated domain (HA2) KBU60_08190 PF11898 Domain of unknown function (DUF3418) KBU60_08190 PF00271 Helicase conserved C-terminal domain KBU60_08190 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold KBU60_08195 PF02525 Flavodoxin-like fold KBU60_08205 PF02613 Nitrate reductase delta subunit KBU60_08210 PF04976 DMSO reductase anchor subunit (DmsC) KBU60_08215 PF13247 4Fe-4S dicluster domain KBU60_08215 PF12800 4Fe-4S binding domain KBU60_08220 PF00384 Molybdopterin oxidoreductase KBU60_08220 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KBU60_08220 PF01568 Molydopterin dinucleotide binding domain KBU60_08250 PF17158 Membrane-associated sensor, integral membrane domain KBU60_08250 PF00990 Diguanylate cyclase, GGDEF domain KBU60_08260 PF00012 Hsp70 protein KBU60_08265 PF00012 Hsp70 protein KBU60_08290 PF00664 ABC transporter transmembrane region KBU60_08290 PF00005 ABC transporter KBU60_08295 PF00005 ABC transporter KBU60_08295 PF00664 ABC transporter transmembrane region KBU60_08315 PF03222 Tryptophan/tyrosine permease family KBU60_08320 PF00465 Iron-containing alcohol dehydrogenase KBU60_08325 PF01966 HD domain KBU60_08365 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE KBU60_08405 PF05947 Type VI secretion system, TssF KBU60_08415 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath KBU60_08430 PF00069 Protein kinase domain KBU60_08455 PF04717 Type VI secretion system, phage-baseplate injector KBU60_08460 PF05638 Type VI secretion system effector, Hcp KBU60_08465 PF10431 C-terminal, D2-small domain, of ClpB protein KBU60_08465 PF17871 AAA lid domain KBU60_08465 PF07724 AAA domain (Cdc48 subfamily) KBU60_08465 PF00004 ATPase family associated with various cellular activities (AAA) KBU60_08470 PF02954 Bacterial regulatory protein, Fis family KBU60_08470 PF00158 Sigma-54 interaction domain KBU60_08470 PF00072 Response regulator receiver domain KBU60_08505 PF01551 Peptidase family M23 KBU60_08505 PF08525 Opacity-associated protein A N-terminal motif KBU60_08505 PF01476 LysM domain KBU60_08510 PF03741 Integral membrane protein TerC family KBU60_08520 PF04055 Radical SAM superfamily KBU60_08525 PF11230 Protein of unknown function (DUF3029) KBU60_08530 PF01810 LysE type translocator KBU60_08535 PF01966 HD domain KBU60_08535 PF11871 Domain of unknown function (DUF3391) KBU60_08540 PF03707 Bacterial signalling protein N terminal repeat KBU60_08540 PF00990 Diguanylate cyclase, GGDEF domain KBU60_08540 PF00563 EAL domain KBU60_08545 PF00072 Response regulator receiver domain KBU60_08545 PF00158 Sigma-54 interaction domain KBU60_08545 PF02954 Bacterial regulatory protein, Fis family KBU60_08550 PF00512 His Kinase A (phospho-acceptor) domain KBU60_08550 PF00497 Bacterial extracellular solute-binding proteins, family 3 KBU60_08550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_08555 PF00939 Sodium:sulfate symporter transmembrane region KBU60_08560 PF00583 Acetyltransferase (GNAT) family KBU60_08570 PF00300 Histidine phosphatase superfamily (branch 1) KBU60_08590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_08590 PF03466 LysR substrate binding domain KBU60_08595 PF08543 Phosphomethylpyrimidine kinase KBU60_08615 PF13533 Biotin-lipoyl like KBU60_08660 PF14497 Glutathione S-transferase, C-terminal domain KBU60_08660 PF02798 Glutathione S-transferase, N-terminal domain KBU60_08670 PF04209 homogentisate 1,2-dioxygenase KBU60_08675 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KBU60_08680 PF07687 Peptidase dimerisation domain KBU60_08680 PF01546 Peptidase family M20/M25/M40 KBU60_08685 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KBU60_08690 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_08695 PF12911 N-terminal TM domain of oligopeptide transport permease C KBU60_08695 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_08700 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KBU60_08700 PF00005 ABC transporter KBU60_08705 PF00005 ABC transporter KBU60_08705 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KBU60_08715 PF08453 Peptidase family M9 N-terminal KBU60_08715 PF01752 Collagenase KBU60_08725 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_08730 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_08735 PF00005 ABC transporter KBU60_08735 PF08402 TOBE domain KBU60_08740 PF00701 Dihydrodipicolinate synthetase family KBU60_08745 PF02423 Ornithine cyclodeaminase/mu-crystallin family KBU60_08760 PF05544 Proline racemase KBU60_08765 PF00171 Aldehyde dehydrogenase family KBU60_08770 PF00392 Bacterial regulatory proteins, gntR family KBU60_08785 PF13737 Transposase DDE domain KBU60_08800 PF05971 RNA methyltransferase KBU60_08805 PF01863 Protein of unknown function DUF45 KBU60_08810 PF04991 LicD family KBU60_08815 PF16363 GDP-mannose 4,6 dehydratase KBU60_08820 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase KBU60_08840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_08840 PF03466 LysR substrate binding domain KBU60_08860 PF00005 ABC transporter KBU60_08865 PF01032 FecCD transport family KBU60_08870 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family KBU60_08885 PF00300 Histidine phosphatase superfamily (branch 1) KBU60_08890 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase KBU60_08895 PF02654 Cobalamin-5-phosphate synthase KBU60_08900 PF02277 Phosphoribosyltransferase KBU60_08905 PF13460 NAD(P)H-binding KBU60_08910 PF00375 Sodium:dicarboxylate symporter family KBU60_08915 PF00929 Exonuclease KBU60_08915 PF08411 Exonuclease C-terminal KBU60_08920 PF03788 LrgA family KBU60_08925 PF04172 LrgB-like family KBU60_08930 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region KBU60_08930 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KBU60_08935 PF02222 ATP-grasp domain KBU60_08940 PF05724 Thiopurine S-methyltransferase (TPMT) KBU60_08950 PF00216 Bacterial DNA-binding protein KBU60_08960 PF03484 tRNA synthetase B5 domain KBU60_08960 PF03483 B3/4 domain KBU60_08960 PF01588 Putative tRNA binding domain KBU60_08960 PF03147 Ferredoxin-fold anticodon binding domain KBU60_08960 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain KBU60_08965 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain KBU60_08965 PF01409 tRNA synthetases class II core domain (F) KBU60_08970 PF17158 Membrane-associated sensor, integral membrane domain KBU60_08970 PF00990 Diguanylate cyclase, GGDEF domain KBU60_09000 PF01906 Putative heavy-metal-binding KBU60_09005 PF00453 Ribosomal protein L20 KBU60_09010 PF01632 Ribosomal protein L35 KBU60_09015 PF05198 Translation initiation factor IF-3, N-terminal domain KBU60_09015 PF00707 Translation initiation factor IF-3, C-terminal domain KBU60_09020 PF03129 Anticodon binding domain KBU60_09020 PF02824 TGS domain KBU60_09020 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KBU60_09020 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KBU60_09035 PF07702 UTRA domain KBU60_09035 PF00392 Bacterial regulatory proteins, gntR family KBU60_09040 PF01979 Amidohydrolase family KBU60_09045 PF00491 Arginase family KBU60_09050 PF01175 Urocanase Rossmann-like domain KBU60_09050 PF17391 Urocanase N-terminal domain KBU60_09050 PF17392 Urocanase C-terminal domain KBU60_09055 PF00221 Aromatic amino acid lyase KBU60_09065 PF04191 Phospholipid methyltransferase KBU60_09070 PF02913 FAD linked oxidases, C-terminal domain KBU60_09070 PF01565 FAD binding domain KBU60_09070 PF13183 4Fe-4S dicluster domain KBU60_09085 PF00691 OmpA family KBU60_09085 PF05736 OprF membrane domain KBU60_09105 PF01259 SAICAR synthetase KBU60_09110 PF09423 PhoD-like phosphatase KBU60_09110 PF16655 PhoD-like phosphatase, N-terminal domain KBU60_09120 PF02253 Phospholipase A1 KBU60_09125 PF00271 Helicase conserved C-terminal domain KBU60_09125 PF08482 ATP-dependent helicase C-terminal KBU60_09125 PF00270 DEAD/DEAH box helicase KBU60_09125 PF04408 Helicase associated domain (HA2) KBU60_09130 PF00390 Malic enzyme, N-terminal domain KBU60_09130 PF03949 Malic enzyme, NAD binding domain KBU60_09135 PF02698 DUF218 domain KBU60_09140 PF00939 Sodium:sulfate symporter transmembrane region KBU60_09145 PF00990 Diguanylate cyclase, GGDEF domain KBU60_09145 PF00072 Response regulator receiver domain KBU60_09155 PF00266 Aminotransferase class-V KBU60_09165 PF07992 Pyridine nucleotide-disulphide oxidoreductase KBU60_09170 PF00664 ABC transporter transmembrane region KBU60_09170 PF00005 ABC transporter KBU60_09175 PF00664 ABC transporter transmembrane region KBU60_09175 PF00005 ABC transporter KBU60_09180 PF00291 Pyridoxal-phosphate dependent enzyme KBU60_09185 PF00266 Aminotransferase class-V KBU60_09195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_09195 PF00497 Bacterial extracellular solute-binding proteins, family 3 KBU60_09195 PF00512 His Kinase A (phospho-acceptor) domain KBU60_09210 PF04994 TfoX C-terminal domain KBU60_09210 PF04993 TfoX N-terminal domain KBU60_09220 PF03956 Lysine exporter LysO KBU60_09230 PF00282 Pyridoxal-dependent decarboxylase conserved domain KBU60_09235 PF01380 SIS domain KBU60_09235 PF01418 Helix-turn-helix domain, rpiR family KBU60_09240 PF00465 Iron-containing alcohol dehydrogenase KBU60_09245 PF00462 Glutaredoxin KBU60_09250 PF02080 TrkA-C domain KBU60_09250 PF06826 Predicted Permease Membrane Region KBU60_09255 PF07055 Enoyl reductase FAD binding domain KBU60_09255 PF12241 Trans-2-enoyl-CoA reductase catalytic region KBU60_09255 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase KBU60_09260 PF09317 Domain of unknown function (DUF1974) KBU60_09260 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KBU60_09260 PF02770 Acyl-CoA dehydrogenase, middle domain KBU60_09260 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KBU60_09265 PF00440 Bacterial regulatory proteins, tetR family KBU60_09265 PF16295 Tetracyclin repressor-like, C-terminal domain KBU60_09270 PF06965 Na+/H+ antiporter 1 KBU60_09285 PF00005 ABC transporter KBU60_09290 PF01554 MatE KBU60_09295 PF11066 Protein of unknown function (DUF2867) KBU60_09295 PF13460 NAD(P)H-binding KBU60_09300 PF03264 NapC/NirT cytochrome c family, N-terminal region KBU60_09315 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) KBU60_09330 PF07690 Major Facilitator Superfamily KBU60_09335 PF00849 RNA pseudouridylate synthase KBU60_09335 PF01479 S4 domain KBU60_09340 PF00271 Helicase conserved C-terminal domain KBU60_09340 PF04851 Type III restriction enzyme, res subunit KBU60_09350 PF00072 Response regulator receiver domain KBU60_09350 PF00486 Transcriptional regulatory protein, C terminal KBU60_09355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_09360 PF01386 Ribosomal L25p family KBU60_09375 PF02872 5'-nucleotidase, C-terminal domain KBU60_09375 PF00149 Calcineurin-like phosphoesterase KBU60_09385 PF06945 Protein of unknown function (DUF1289) KBU60_09395 PF00196 Bacterial regulatory proteins, luxR family KBU60_09395 PF00072 Response regulator receiver domain KBU60_09400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_09400 PF00512 His Kinase A (phospho-acceptor) domain KBU60_09410 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster KBU60_09410 PF07992 Pyridine nucleotide-disulphide oxidoreductase KBU60_09420 PF09335 SNARE associated Golgi protein KBU60_09425 PF13416 Bacterial extracellular solute-binding protein KBU60_09430 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_09435 PF00005 ABC transporter KBU60_09440 PF01066 CDP-alcohol phosphatidyltransferase KBU60_09450 PF00158 Sigma-54 interaction domain KBU60_09450 PF01590 GAF domain KBU60_09455 PF03063 Prismane/CO dehydrogenase family KBU60_09460 PF00175 Oxidoreductase NAD-binding domain KBU60_09460 PF00970 Oxidoreductase FAD-binding domain KBU60_09460 PF00111 2Fe-2S iron-sulfur cluster binding domain KBU60_09470 PF00849 RNA pseudouridylate synthase KBU60_09480 PF00209 Sodium:neurotransmitter symporter family KBU60_09485 PF13396 Phospholipase_D-nuclease N-terminal KBU60_09485 PF13091 PLD-like domain KBU60_09490 PF01053 Cys/Met metabolism PLP-dependent enzyme KBU60_09495 PF00561 alpha/beta hydrolase fold KBU60_09500 PF03280 Proteobacterial lipase chaperone protein KBU60_09505 PF03352 Methyladenine glycosylase KBU60_09510 PF00873 AcrB/AcrD/AcrF family KBU60_09520 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KBU60_09525 PF04024 PspC domain KBU60_09530 PF06667 Phage shock protein B KBU60_09535 PF04012 PspA/IM30 family KBU60_09540 PF00158 Sigma-54 interaction domain KBU60_09540 PF02954 Bacterial regulatory protein, Fis family KBU60_09545 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KBU60_09550 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_09555 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_09555 PF12911 N-terminal TM domain of oligopeptide transport permease C KBU60_09560 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KBU60_09560 PF00005 ABC transporter KBU60_09565 PF00005 ABC transporter KBU60_09575 PF01368 DHH family KBU60_09575 PF02833 DHHA2 domain KBU60_09590 PF00384 Molybdopterin oxidoreductase KBU60_09590 PF18364 Molybdopterin oxidoreductase N-terminal domain KBU60_09590 PF01568 Molydopterin dinucleotide binding domain KBU60_09595 PF03264 NapC/NirT cytochrome c family, N-terminal region KBU60_09600 PF06796 Periplasmic nitrate reductase protein NapE KBU60_09605 PF03649 Uncharacterised protein family (UPF0014) KBU60_09615 PF01226 Formate/nitrite transporter KBU60_09640 PF02698 DUF218 domain KBU60_09645 PF00265 Thymidine kinase KBU60_09650 PF09190 DALR domain KBU60_09650 PF01406 tRNA synthetases class I (C) catalytic domain KBU60_09655 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KBU60_09660 PF00149 Calcineurin-like phosphoesterase KBU60_09665 PF00563 EAL domain KBU60_09665 PF08668 HDOD domain KBU60_09670 PF02810 SEC-C motif KBU60_09675 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase KBU60_09675 PF01502 Phosphoribosyl-AMP cyclohydrolase KBU60_09680 PF00977 Histidine biosynthesis protein KBU60_09685 PF00977 Histidine biosynthesis protein KBU60_09690 PF00117 Glutamine amidotransferase class-I KBU60_09695 PF00475 Imidazoleglycerol-phosphate dehydratase KBU60_09695 PF08645 Polynucleotide kinase 3 phosphatase KBU60_09700 PF00155 Aminotransferase class I and II KBU60_09705 PF00815 Histidinol dehydrogenase KBU60_09710 PF01634 ATP phosphoribosyltransferase KBU60_09710 PF08029 HisG, C-terminal domain KBU60_09715 PF00158 Sigma-54 interaction domain KBU60_09715 PF00072 Response regulator receiver domain KBU60_09715 PF02954 Bacterial regulatory protein, Fis family KBU60_09725 PF03553 Na+/H+ antiporter family KBU60_09730 PF00816 H-NS histone family KBU60_09735 PF00294 pfkB family carbohydrate kinase KBU60_09750 PF04356 Protein of unknown function (DUF489) KBU60_09755 PF08328 Adenylosuccinate lyase C-terminal KBU60_09755 PF00206 Lyase KBU60_09790 PF00106 short chain dehydrogenase KBU60_09800 PF01435 Peptidase family M48 KBU60_09815 PF08241 Methyltransferase domain KBU60_09820 PF00155 Aminotransferase class I and II KBU60_09825 PF04055 Radical SAM superfamily KBU60_09825 PF06968 Biotin and Thiamin Synthesis associated domain KBU60_09830 PF00202 Aminotransferase class-III KBU60_09835 PF01258 Prokaryotic dksA/traR C4-type zinc finger KBU60_09845 PF02403 Seryl-tRNA synthetase N-terminal domain KBU60_09845 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KBU60_09850 PF12002 MgsA AAA+ ATPase C terminal KBU60_09850 PF00004 ATPase family associated with various cellular activities (AAA) KBU60_09850 PF16193 AAA C-terminal domain KBU60_09855 PF03548 Outer membrane lipoprotein carrier protein LolA KBU60_09860 PF17854 FtsK alpha domain KBU60_09860 PF13491 4TM region of DNA translocase FtsK/SpoIIIE KBU60_09860 PF01580 FtsK/SpoIIIE family KBU60_09860 PF09397 Ftsk gamma domain KBU60_09865 PF01037 Lrp/AsnC ligand binding domain KBU60_09870 PF01262 Alanine dehydrogenase/PNT, C-terminal domain KBU60_09870 PF05222 Alanine dehydrogenase/PNT, N-terminal domain KBU60_09880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_09880 PF03466 LysR substrate binding domain KBU60_09890 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) KBU60_09895 PF03372 Endonuclease/Exonuclease/phosphatase family KBU60_09905 PF00579 tRNA synthetases class I (W and Y) KBU60_09920 PF00873 AcrB/AcrD/AcrF family KBU60_09925 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KBU60_09925 PF00529 HlyD membrane-fusion protein of T1SS KBU60_09930 PF00672 HAMP domain KBU60_09930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KBU60_09930 PF12729 Four helix bundle sensory module for signal transduction KBU60_09960 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) KBU60_09965 PF07969 Amidohydrolase family KBU60_10000 PF01381 Helix-turn-helix KBU60_10000 PF00145 C-5 cytosine-specific DNA methylase KBU60_10005 PF12419 SNF2 Helicase protein KBU60_10005 PF00271 Helicase conserved C-terminal domain KBU60_10005 PF00176 SNF2 family N-terminal domain KBU60_10020 PF07728 AAA domain (dynein-related subfamily) KBU60_10030 PF03852 DNA mismatch endonuclease Vsr KBU60_10045 PF00580 UvrD/REP helicase N-terminal domain KBU60_10045 PF12705 PD-(D/E)XK nuclease superfamily KBU60_10045 PF13361 UvrD-like helicase C-terminal domain KBU60_10070 PF00589 Phage integrase family KBU60_10070 PF13356 Arm DNA-binding domain KBU60_10080 PF06610 L-alanine exporter KBU60_10085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_10085 PF00512 His Kinase A (phospho-acceptor) domain KBU60_10085 PF09308 LuxQ, periplasmic KBU60_10085 PF00072 Response regulator receiver domain KBU60_10095 PF03738 Glutathionylspermidine synthase preATP-grasp KBU60_10105 PF03994 Domain of Unknown Function (DUF350) KBU60_10115 PF02445 Quinolinate synthetase A protein KBU60_10120 PF13174 Tetratricopeptide repeat KBU60_10120 PF16331 TolA binding protein trimerisation KBU60_10125 PF00691 OmpA family KBU60_10130 PF07676 WD40-like Beta Propeller Repeat KBU60_10130 PF04052 TolB amino-terminal domain KBU60_10140 PF02472 Biopolymer transport protein ExbD/TolR KBU60_10145 PF01618 MotA/TolQ/ExbB proton channel family KBU60_10150 PF03061 Thioesterase superfamily KBU60_10160 PF08173 Membrane bound YbgT-like protein KBU60_10165 PF02322 Cytochrome bd terminal oxidase subunit II KBU60_10170 PF01654 Cytochrome bd terminal oxidase subunit I KBU60_10175 PF17864 RuvB AAA lid domain KBU60_10175 PF05496 Holliday junction DNA helicase RuvB P-loop domain KBU60_10175 PF05491 RuvB C-terminal winged helix domain KBU60_10180 PF01330 RuvA N terminal domain KBU60_10180 PF07499 RuvA, C-terminal domain KBU60_10185 PF02203 Tar ligand binding domain homologue KBU60_10185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KBU60_10185 PF00672 HAMP domain KBU60_10190 PF02075 Crossover junction endodeoxyribonuclease RuvC KBU60_10195 PF02938 GAD domain KBU60_10195 PF00152 tRNA synthetases class II (D, K and N) KBU60_10195 PF01336 OB-fold nucleic acid binding domain KBU60_10200 PF01904 Protein of unknown function DUF72 KBU60_10205 PF13649 Methyltransferase domain KBU60_10210 PF08003 Protein of unknown function (DUF1698) KBU60_10215 PF08443 RimK-like ATP-grasp domain KBU60_10215 PF18030 RimK PreATP-grasp domain KBU60_10225 PF18030 RimK PreATP-grasp domain KBU60_10225 PF08443 RimK-like ATP-grasp domain KBU60_10235 PF04310 MukB N-terminal KBU60_10235 PF16330 MukB hinge domain KBU60_10240 PF04288 MukE-like family KBU60_10245 PF17193 MukF C-terminal domain KBU60_10245 PF03882 MukF winged-helix domain KBU60_10245 PF17192 MukF middle domain KBU60_10250 PF13847 Methyltransferase domain KBU60_10255 PF02698 DUF218 domain KBU60_10260 PF00486 Transcriptional regulatory protein, C terminal KBU60_10260 PF00072 Response regulator receiver domain KBU60_10265 PF02613 Nitrate reductase delta subunit KBU60_10270 PF00356 Bacterial regulatory proteins, lacI family KBU60_10275 PF04994 TfoX C-terminal domain KBU60_10275 PF04993 TfoX N-terminal domain KBU60_10295 PF08323 Starch synthase catalytic domain KBU60_10295 PF00534 Glycosyl transferases group 1 KBU60_10300 PF00483 Nucleotidyl transferase KBU60_10305 PF01396 Topoisomerase DNA binding C4 zinc finger KBU60_10305 PF01751 Toprim domain KBU60_10305 PF08272 Topoisomerase I zinc-ribbon-like KBU60_10305 PF01131 DNA topoisomerase KBU60_10310 PF10692 Protein of unknown function (DUF2498) KBU60_10315 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KBU60_10325 PF03588 Leucyl/phenylalanyl-tRNA protein transferase KBU60_10330 PF04377 Arginine-tRNA-protein transferase, C terminus KBU60_10330 PF04376 Arginine-tRNA-protein transferase, N terminus KBU60_10335 PF01176 Translation initiation factor 1A / IF-1 KBU60_10345 PF02861 Clp amino terminal domain, pathogenicity island component KBU60_10345 PF10431 C-terminal, D2-small domain, of ClpB protein KBU60_10345 PF17871 AAA lid domain KBU60_10345 PF07724 AAA domain (Cdc48 subfamily) KBU60_10345 PF00004 ATPase family associated with various cellular activities (AAA) KBU60_10350 PF02617 ATP-dependent Clp protease adaptor protein ClpS KBU60_10355 PF00313 'Cold-shock' DNA-binding domain KBU60_10360 PF03971 Monomeric isocitrate dehydrogenase KBU60_10365 PF00849 RNA pseudouridylate synthase KBU60_10370 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) KBU60_10380 PF13307 Helicase C-terminal domain KBU60_10380 PF06733 DEAD_2 KBU60_10385 PF01925 Sulfite exporter TauE/SafE KBU60_10390 PF07445 Primosomal replication protein priC KBU60_10395 PF10689 Protein of unknown function (DUF2496) KBU60_10400 PF03372 Endonuclease/Exonuclease/phosphatase family KBU60_10410 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_10415 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_10420 PF00497 Bacterial extracellular solute-binding proteins, family 3 KBU60_10425 PF00005 ABC transporter KBU60_10440 PF01228 Glycine radical KBU60_10440 PF02901 Pyruvate formate lyase-like KBU60_10450 PF04055 Radical SAM superfamily KBU60_10460 PF03887 YfbU domain KBU60_10465 PF06798 PrkA serine protein kinase C-terminal domain KBU60_10465 PF08298 PrkA AAA domain KBU60_10470 PF04285 Protein of unknown function (DUF444) KBU60_10475 PF04293 SpoVR like protein KBU60_10480 PF02348 Cytidylyltransferase KBU60_10485 PF03966 Trm112p-like protein KBU60_10490 PF02606 Tetraacyldisaccharide-1-P 4'-kinase KBU60_10495 PF00005 ABC transporter KBU60_10495 PF00664 ABC transporter transmembrane region KBU60_10500 PF03772 Competence protein KBU60_10500 PF13567 Domain of unknown function (DUF4131) KBU60_10500 PF00753 Metallo-beta-lactamase superfamily KBU60_10510 PF12704 MacB-like periplasmic core domain KBU60_10510 PF02687 FtsX-like permease family KBU60_10515 PF00005 ABC transporter KBU60_10520 PF02687 FtsX-like permease family KBU60_10520 PF12704 MacB-like periplasmic core domain KBU60_10530 PF02559 CarD-like/TRCF domain KBU60_10530 PF03461 TRCF domain KBU60_10530 PF00270 DEAD/DEAH box helicase KBU60_10530 PF00271 Helicase conserved C-terminal domain KBU60_10530 PF17757 UvrB interaction domain KBU60_10545 PF07992 Pyridine nucleotide-disulphide oxidoreductase KBU60_10550 PF05728 Uncharacterised protein family (UPF0227) KBU60_10560 PF08139 Prokaryotic membrane lipoprotein lipid attachment site KBU60_10560 PF13036 Peptidoglycan-synthase activator LpoB KBU60_10575 PF01230 HIT domain KBU60_10580 PF00672 HAMP domain KBU60_10580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KBU60_10590 PF01048 Phosphorylase superfamily KBU60_10595 PF00403 Heavy-metal-associated domain KBU60_10600 PF00478 IMP dehydrogenase / GMP reductase domain KBU60_10600 PF00571 CBS domain KBU60_10610 PF11953 Domain of unknown function (DUF3470) KBU60_10610 PF00037 4Fe-4S binding domain KBU60_10615 PF00588 SpoU rRNA Methylase family KBU60_10615 PF08032 RNA 2'-O ribose methyltransferase substrate binding KBU60_10625 PF00990 Diguanylate cyclase, GGDEF domain KBU60_10635 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KBU60_10640 PF09619 Type III secretion system lipoprotein chaperone (YscW) KBU60_10655 PF01037 Lrp/AsnC ligand binding domain KBU60_10655 PF13404 AsnC-type helix-turn-helix domain KBU60_10660 PF00291 Pyridoxal-phosphate dependent enzyme KBU60_10680 PF00873 AcrB/AcrD/AcrF family KBU60_10685 PF13533 Biotin-lipoyl like KBU60_10730 PF07690 Major Facilitator Superfamily KBU60_10735 PF03601 Conserved hypothetical protein 698 KBU60_10745 PF00501 AMP-binding enzyme KBU60_10745 PF13193 AMP-binding enzyme C-terminal domain KBU60_10750 PF13378 Enolase C-terminal domain-like KBU60_10755 PF00378 Enoyl-CoA hydratase/isomerase KBU60_10760 PF12697 Alpha/beta hydrolase family KBU60_10765 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KBU60_10765 PF16582 Middle domain of thiamine pyrophosphate KBU60_10765 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KBU60_10770 PF00425 chorismate binding enzyme KBU60_10775 PF00155 Aminotransferase class I and II KBU60_10785 PF01966 HD domain KBU60_10785 PF13286 Phosphohydrolase-associated domain KBU60_10805 PF13145 PPIC-type PPIASE domain KBU60_10810 PF00216 Bacterial DNA-binding protein KBU60_10815 PF05362 Lon protease (S16) C-terminal proteolytic domain KBU60_10815 PF02190 ATP-dependent protease La (LON) substrate-binding domain KBU60_10815 PF00004 ATPase family associated with various cellular activities (AAA) KBU60_10820 PF10431 C-terminal, D2-small domain, of ClpB protein KBU60_10820 PF07724 AAA domain (Cdc48 subfamily) KBU60_10820 PF06689 ClpX C4-type zinc finger KBU60_10825 PF00574 Clp protease KBU60_10830 PF05698 Bacterial trigger factor protein (TF) C-terminus KBU60_10830 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KBU60_10830 PF05697 Bacterial trigger factor protein (TF) KBU60_10840 PF02743 Cache domain KBU60_10840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_10840 PF00512 His Kinase A (phospho-acceptor) domain KBU60_10845 PF00158 Sigma-54 interaction domain KBU60_10845 PF00072 Response regulator receiver domain KBU60_10845 PF02954 Bacterial regulatory protein, Fis family KBU60_10855 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component KBU60_10860 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component KBU60_10865 PF03480 Bacterial extracellular solute-binding protein, family 7 KBU60_10870 PF02696 Uncharacterized ACR, YdiU/UPF0061 family KBU60_10885 PF02386 Cation transport protein KBU60_10890 PF02254 TrkA-N domain KBU60_10890 PF02080 TrkA-C domain KBU60_10895 PF00271 Helicase conserved C-terminal domain KBU60_10895 PF00270 DEAD/DEAH box helicase KBU60_10900 PF00571 CBS domain KBU60_10900 PF01595 Cyclin M transmembrane N-terminal domain KBU60_10900 PF03471 Transporter associated domain KBU60_10910 PF04820 Tryptophan halogenase KBU60_10935 PF00550 Phosphopantetheine attachment site KBU60_10940 PF00550 Phosphopantetheine attachment site KBU60_10955 PF07977 FabA-like domain KBU60_10960 PF00535 Glycosyl transferase family 2 KBU60_10965 PF00221 Aromatic amino acid lyase KBU60_10990 PF00109 Beta-ketoacyl synthase, N-terminal domain KBU60_10990 PF02801 Beta-ketoacyl synthase, C-terminal domain KBU60_10995 PF07977 FabA-like domain KBU60_11005 PF02801 Beta-ketoacyl synthase, C-terminal domain KBU60_11005 PF00109 Beta-ketoacyl synthase, N-terminal domain KBU60_11020 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain KBU60_11020 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain KBU60_11025 PF07662 Na+ dependent nucleoside transporter C-terminus KBU60_11025 PF07670 Nucleoside recognition KBU60_11025 PF01773 Na+ dependent nucleoside transporter N-terminus KBU60_11030 PF03466 LysR substrate binding domain KBU60_11030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_11035 PF13406 Transglycosylase SLT domain KBU60_11040 PF05166 YcgL domain KBU60_11045 PF03775 Septum formation inhibitor MinC, C-terminal domain KBU60_11045 PF05209 Septum formation inhibitor MinC, N-terminal domain KBU60_11050 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain KBU60_11055 PF03776 Septum formation topological specificity factor MinE KBU60_11060 PF01612 3'-5' exonuclease KBU60_11060 PF00570 HRDC domain KBU60_11065 PF13193 AMP-binding enzyme C-terminal domain KBU60_11065 PF00501 AMP-binding enzyme KBU60_11070 PF00561 alpha/beta hydrolase fold KBU60_11085 PF00814 Glycoprotease family KBU60_11090 PF13307 Helicase C-terminal domain KBU60_11090 PF04851 Type III restriction enzyme, res subunit KBU60_11095 PF01842 ACT domain KBU60_11095 PF00551 Formyl transferase KBU60_11100 PF06185 YecM protein KBU60_11105 PF03485 Arginyl tRNA synthetase N terminal domain KBU60_11105 PF05746 DALR anticodon binding domain KBU60_11105 PF00750 tRNA synthetases class I (R) KBU60_11120 PF07664 Ferrous iron transport protein B C terminus KBU60_11120 PF17910 FeoB cytosolic helical domain KBU60_11120 PF07670 Nucleoside recognition KBU60_11120 PF02421 Ferrous iron transport protein B KBU60_11125 PF04023 FeoA domain KBU60_11130 PF12833 Helix-turn-helix domain KBU60_11130 PF02311 AraC-like ligand binding domain KBU60_11135 PF01297 Zinc-uptake complex component A periplasmic KBU60_11140 PF00005 ABC transporter KBU60_11145 PF00950 ABC 3 transport family KBU60_11150 PF00549 CoA-ligase KBU60_11150 PF02629 CoA binding domain KBU60_11155 PF08442 ATP-grasp domain KBU60_11155 PF00549 CoA-ligase KBU60_11160 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KBU60_11160 PF02817 e3 binding domain KBU60_11160 PF00364 Biotin-requiring enzyme KBU60_11165 PF02779 Transketolase, pyrimidine binding domain KBU60_11165 PF00676 Dehydrogenase E1 component KBU60_11165 PF16870 2-oxoglutarate dehydrogenase C-terminal KBU60_11165 PF16078 2-oxoglutarate dehydrogenase N-terminus KBU60_11170 PF13085 2Fe-2S iron-sulfur cluster binding domain KBU60_11175 PF02910 Fumarate reductase flavoprotein C-term KBU60_11175 PF00890 FAD binding domain KBU60_11180 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KBU60_11185 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KBU60_11190 PF00285 Citrate synthase, C-terminal domain KBU60_11195 PF01784 NIF3 (NGG1p interacting factor 3) KBU60_11205 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KBU60_11205 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KBU60_11205 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KBU60_11205 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KBU60_11210 PF03925 SeqA protein C-terminal domain KBU60_11210 PF17206 SeqA protein N-terminal domain KBU60_11215 PF12697 Alpha/beta hydrolase family KBU60_11225 PF00258 Flavodoxin KBU60_11235 PF01475 Ferric uptake regulator family KBU60_11240 PF00749 tRNA synthetases class I (E and Q), catalytic domain KBU60_11240 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain KBU60_11245 PF00367 phosphotransferase system, EIIB KBU60_11245 PF02378 Phosphotransferase system, EIIC KBU60_11250 PF01979 Amidohydrolase family KBU60_11255 PF01047 MarR family KBU60_11255 PF00480 ROK family KBU60_11260 PF00999 Sodium/hydrogen exchanger family KBU60_11260 PF02254 TrkA-N domain KBU60_11265 PF00733 Asparagine synthase KBU60_11265 PF13537 Glutamine amidotransferase domain KBU60_11270 PF02357 Transcription termination factor nusG KBU60_11275 PF00854 POT family KBU60_11280 PF00762 Ferrochelatase KBU60_11285 PF05191 Adenylate kinase, active site lid KBU60_11290 PF00183 Hsp90 protein KBU60_11290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_11295 PF00486 Transcriptional regulatory protein, C terminal KBU60_11300 PF17323 Trans-membrane regulatory protein ToxS KBU60_11315 PF12850 Calcineurin-like phosphoesterase superfamily domain KBU60_11330 PF07556 Protein of unknown function (DUF1538) KBU60_11335 PF07556 Protein of unknown function (DUF1538) KBU60_11340 PF01370 NAD dependent epimerase/dehydratase family KBU60_11340 PF08338 Domain of unknown function (DUF1731) KBU60_11345 PF00106 short chain dehydrogenase KBU60_11350 PF00085 Thioredoxin KBU60_11355 PF01145 SPFH domain / Band 7 family KBU60_11355 PF16200 C-terminal region of band_7 KBU60_11370 PF03573 outer membrane porin, OprD family KBU60_11375 PF00533 BRCA1 C Terminus (BRCT) domain KBU60_11375 PF01653 NAD-dependent DNA ligase adenylation domain KBU60_11375 PF03120 NAD-dependent DNA ligase OB-fold domain KBU60_11375 PF03119 NAD-dependent DNA ligase C4 zinc finger domain KBU60_11375 PF12826 Helix-hairpin-helix motif KBU60_11380 PF04354 ZipA, C-terminal FtsZ-binding domain KBU60_11390 PF00291 Pyridoxal-phosphate dependent enzyme KBU60_11395 PF00381 PTS HPr component phosphorylation site KBU60_11400 PF02896 PEP-utilising enzyme, TIM barrel domain KBU60_11400 PF05524 PEP-utilising enzyme, N-terminal KBU60_11400 PF00391 PEP-utilising enzyme, mobile domain KBU60_11405 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 KBU60_11410 PF07196 Flagellin hook IN motif KBU60_11410 PF00669 Bacterial flagellin N-terminal helical region KBU60_11410 PF00700 Bacterial flagellin C-terminal helical region KBU60_11415 PF07196 Flagellin hook IN motif KBU60_11415 PF00669 Bacterial flagellin N-terminal helical region KBU60_11415 PF00700 Bacterial flagellin C-terminal helical region KBU60_11420 PF07196 Flagellin hook IN motif KBU60_11420 PF00669 Bacterial flagellin N-terminal helical region KBU60_11420 PF00700 Bacterial flagellin C-terminal helical region KBU60_11425 PF00669 Bacterial flagellin N-terminal helical region KBU60_11430 PF07196 Flagellin hook IN motif KBU60_11430 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KBU60_11435 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase KBU60_11435 PF10135 Rod binding protein KBU60_11440 PF02119 Flagellar P-ring protein KBU60_11445 PF02107 Flagellar L-ring protein KBU60_11450 PF00460 Flagella basal body rod protein KBU60_11450 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KBU60_11455 PF00460 Flagella basal body rod protein KBU60_11455 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KBU60_11460 PF00460 Flagella basal body rod protein KBU60_11460 PF07559 Flagellar basal body protein FlaE KBU60_11460 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KBU60_11465 PF13860 FlgD Ig-like domain KBU60_11465 PF03963 Flagellar hook capping protein - N-terminal region KBU60_11465 PF13861 FlgD Tudor-like domain KBU60_11470 PF00460 Flagella basal body rod protein KBU60_11470 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KBU60_11475 PF00460 Flagella basal body rod protein KBU60_11480 PF01739 CheR methyltransferase, SAM binding domain KBU60_11480 PF03705 CheR methyltransferase, all-alpha domain KBU60_11485 PF00072 Response regulator receiver domain KBU60_11485 PF01584 CheW-like domain KBU60_11530 PF00691 OmpA family KBU60_11530 PF01389 OmpA-like transmembrane domain KBU60_11535 PF00749 tRNA synthetases class I (E and Q), catalytic domain KBU60_11540 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) KBU60_11545 PF13609 Gram-negative porin KBU60_11550 PF00403 Heavy-metal-associated domain KBU60_11565 PF02838 Glycosyl hydrolase family 20, domain 2 KBU60_11565 PF00728 Glycosyl hydrolase family 20, catalytic domain KBU60_11565 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain KBU60_11565 PF03173 Putative carbohydrate binding domain KBU60_11585 PF01713 Smr domain KBU60_11590 PF00849 RNA pseudouridylate synthase KBU60_11590 PF01479 S4 domain KBU60_11595 PF04073 Aminoacyl-tRNA editing domain KBU60_11600 PF02872 5'-nucleotidase, C-terminal domain KBU60_11600 PF00149 Calcineurin-like phosphoesterase KBU60_11605 PF00793 DAHP synthetase I family KBU60_11610 PF13369 Transglutaminase-like superfamily KBU60_11615 PF04247 Invasion gene expression up-regulator, SirB KBU60_11620 PF13847 Methyltransferase domain KBU60_11620 PF17827 PrmC N-terminal domain KBU60_11625 PF03462 PCRF domain KBU60_11625 PF00472 RF-1 domain KBU60_11630 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain KBU60_11630 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain KBU60_11630 PF01488 Shikimate / quinate 5-dehydrogenase KBU60_11635 PF03550 Outer membrane lipoprotein LolB KBU60_11640 PF00288 GHMP kinases N terminal domain KBU60_11640 PF08544 GHMP kinases C terminal KBU60_11645 PF14572 Phosphoribosyl synthetase-associated domain KBU60_11645 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KBU60_11650 PF01195 Peptidyl-tRNA hydrolase KBU60_11655 PF01926 50S ribosome-binding GTPase KBU60_11655 PF06071 Protein of unknown function (DUF933) KBU60_11770 PF01494 FAD binding domain KBU60_11775 PF01938 TRAM domain KBU60_11775 PF00919 Uncharacterized protein family UPF0004 KBU60_11775 PF04055 Radical SAM superfamily KBU60_11780 PF02562 PhoH-like protein KBU60_11785 PF02130 Uncharacterized protein family UPF0054 KBU60_11790 PF00571 CBS domain KBU60_11790 PF03471 Transporter associated domain KBU60_11795 PF00795 Carbon-nitrogen hydrolase KBU60_11800 PF07295 Zinc-ribbon containing domain KBU60_11805 PF00133 tRNA synthetases class I (I, L, M and V) KBU60_11805 PF08264 Anticodon-binding domain of tRNA KBU60_11805 PF13603 Leucyl-tRNA synthetase, Domain 2 KBU60_11810 PF04390 Lipopolysaccharide-assembly KBU60_11815 PF14840 Processivity clamp loader gamma complex DNA pol III C-term KBU60_11815 PF06144 DNA polymerase III, delta subunit KBU60_11825 PF02590 Predicted SPOUT methyltransferase KBU60_11830 PF03717 Penicillin-binding Protein dimerisation domain KBU60_11830 PF00905 Penicillin binding protein transpeptidase domain KBU60_11835 PF01098 Cell cycle protein KBU60_11840 PF03330 Lytic transglycolase KBU60_11840 PF05036 Sporulation related domain KBU60_11845 PF00768 D-alanyl-D-alanine carboxypeptidase KBU60_11845 PF07943 Penicillin-binding protein 5, C-terminal domain KBU60_11850 PF04359 Protein of unknown function (DUF493) KBU60_11855 PF03099 Biotin/lipoate A/B protein ligase family KBU60_11860 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family KBU60_11860 PF04055 Radical SAM superfamily KBU60_11865 PF00464 Serine hydroxymethyltransferase KBU60_11870 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KBU60_11870 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KBU60_11885 PF16657 Maltogenic Amylase, C-terminal domain KBU60_11885 PF00128 Alpha amylase, catalytic domain KBU60_11890 PF02378 Phosphotransferase system, EIIC KBU60_11890 PF00367 phosphotransferase system, EIIB KBU60_11895 PF00356 Bacterial regulatory proteins, lacI family KBU60_11905 PF00005 ABC transporter KBU60_11905 PF09383 NIL domain KBU60_11910 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_11915 PF03180 NLPA lipoprotein KBU60_11920 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) KBU60_11925 PF07348 Syd protein (SUKH-2) KBU60_11930 PF14489 QueF-like protein KBU60_11930 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term KBU60_11940 PF00990 Diguanylate cyclase, GGDEF domain KBU60_11945 PF11892 Domain of unknown function (DUF3412) KBU60_11945 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases KBU60_11945 PF03641 Possible lysine decarboxylase KBU60_11950 PF01367 5'-3' exonuclease, C-terminal SAM fold KBU60_11950 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain KBU60_11955 PF01223 DNA/RNA non-specific endonuclease KBU60_11960 PF01728 FtsJ-like methyltransferase KBU60_11960 PF18125 RlmM ferredoxin-like domain KBU60_11965 PF04241 Protein of unknown function (DUF423) KBU60_11975 PF03466 LysR substrate binding domain KBU60_11975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_11980 PF02926 THUMP domain KBU60_11980 PF02568 Thiamine biosynthesis protein (ThiI) KBU60_11985 PF00691 OmpA family KBU60_11990 PF01618 MotA/TolQ/ExbB proton channel family KBU60_11995 PF02609 Exonuclease VII small subunit KBU60_12000 PF00348 Polyprenyl synthetase KBU60_12005 PF13292 1-deoxy-D-xylulose-5-phosphate synthase KBU60_12005 PF02779 Transketolase, pyrimidine binding domain KBU60_12005 PF02780 Transketolase, C-terminal domain KBU60_12010 PF04608 Phosphatidylglycerophosphatase A KBU60_12015 PF02769 AIR synthase related protein, C-terminal domain KBU60_12015 PF00586 AIR synthase related protein, N-terminal domain KBU60_12020 PF01029 NusB family KBU60_12025 PF00885 6,7-dimethyl-8-ribityllumazine synthase KBU60_12030 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KBU60_12030 PF00925 GTP cyclohydrolase II KBU60_12035 PF00677 Lumazine binding domain KBU60_12040 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KBU60_12040 PF01872 RibD C-terminal domain KBU60_12045 PF03477 ATP cone domain KBU60_12050 PF00171 Aldehyde dehydrogenase family KBU60_12055 PF01472 PUA domain KBU60_12055 PF00696 Amino acid kinase family KBU60_12060 PF07417 Sigma factor-binding transcriptional regulator Crl KBU60_12065 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) KBU60_12070 PF00156 Phosphoribosyl transferase domain KBU60_12075 PF00860 Permease family KBU60_12080 PF01546 Peptidase family M20/M25/M40 KBU60_12080 PF07687 Peptidase dimerisation domain KBU60_12105 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal KBU60_12105 PF02769 AIR synthase related protein, C-terminal domain KBU60_12105 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain KBU60_12110 PF00497 Bacterial extracellular solute-binding proteins, family 3 KBU60_12110 PF01464 Transglycosylase SLT domain KBU60_12115 PF14437 MafB19-like deaminase KBU60_12120 PF03806 AbgT putative transporter family KBU60_12140 PF07963 Prokaryotic N-terminal methylation motif KBU60_12140 PF00114 Pilin (bacterial filament) KBU60_12145 PF00114 Pilin (bacterial filament) KBU60_12145 PF07963 Prokaryotic N-terminal methylation motif KBU60_12150 PF00226 DnaJ domain KBU60_12150 PF01556 DnaJ C terminal domain KBU60_12150 PF00684 DnaJ central domain KBU60_12155 PF00012 Hsp70 protein KBU60_12160 PF00375 Sodium:dicarboxylate symporter family KBU60_12165 PF01025 GrpE KBU60_12170 PF01513 ATP-NAD kinase KBU60_12180 PF02463 RecF/RecN/SMC N terminal domain KBU60_12185 PF04355 SmpA / OmlA family KBU60_12190 PF03658 RnfH family Ubiquitin KBU60_12195 PF03364 Polyketide cyclase / dehydrase and lipid transport KBU60_12200 PF01668 SmpB protein KBU60_12210 PF00589 Phage integrase family KBU60_12210 PF13356 Arm DNA-binding domain KBU60_12245 PF02384 N-6 DNA Methylase KBU60_12245 PF12161 HsdM N-terminal domain KBU60_12250 PF01420 Type I restriction modification DNA specificity domain KBU60_12255 PF18766 SWI2/SNF2 ATPase KBU60_12255 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) KBU60_12255 PF11867 Domain of unknown function (DUF3387) KBU60_12270 PF02796 Helix-turn-helix domain of resolvase KBU60_12270 PF00239 Resolvase, N terminal domain KBU60_12285 PF13737 Transposase DDE domain KBU60_12290 PF00313 'Cold-shock' DNA-binding domain KBU60_12310 PF00313 'Cold-shock' DNA-binding domain KBU60_12350 PF03466 LysR substrate binding domain KBU60_12350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_12355 PF00583 Acetyltransferase (GNAT) family KBU60_12355 PF00795 Carbon-nitrogen hydrolase KBU60_12375 PF00202 Aminotransferase class-III KBU60_12380 PF01053 Cys/Met metabolism PLP-dependent enzyme KBU60_12385 PF07969 Amidohydrolase family KBU60_12400 PF03466 LysR substrate binding domain KBU60_12400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_12405 PF01266 FAD dependent oxidoreductase KBU60_12410 PF01235 Sodium:alanine symporter family KBU60_12420 PF01184 GPR1/FUN34/yaaH family KBU60_12425 PF00704 Glycosyl hydrolases family 18 KBU60_12425 PF06483 Chitinase C KBU60_12430 PF03553 Na+/H+ antiporter family KBU60_12435 PF02540 NAD synthase KBU60_12435 PF00958 GMP synthase C terminal domain KBU60_12435 PF00117 Glutamine amidotransferase class-I KBU60_12440 PF00478 IMP dehydrogenase / GMP reductase domain KBU60_12440 PF00571 CBS domain KBU60_12445 PF13742 OB-fold nucleic acid binding domain KBU60_12445 PF02601 Exonuclease VII, large subunit KBU60_12460 PF01926 50S ribosome-binding GTPase KBU60_12460 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal KBU60_12465 PF13360 PQQ-like domain KBU60_12470 PF09976 Tetratricopeptide repeat-like domain KBU60_12475 PF13393 Histidyl-tRNA synthetase KBU60_12475 PF03129 Anticodon binding domain KBU60_12480 PF04551 GcpE protein KBU60_12485 PF13464 Domain of unknown function (DUF4115) KBU60_12490 PF04055 Radical SAM superfamily KBU60_12495 PF00334 Nucleoside diphosphate kinase KBU60_12500 PF12404 Peptidase KBU60_12500 PF00883 Cytosol aminopeptidase family, catalytic domain KBU60_12505 PF04384 Iron-sulphur cluster assembly KBU60_12510 PF00111 2Fe-2S iron-sulfur cluster binding domain KBU60_12515 PF00012 Hsp70 protein KBU60_12520 PF07743 HSCB C-terminal oligomerisation domain KBU60_12520 PF00226 DnaJ domain KBU60_12525 PF01521 Iron-sulphur cluster biosynthesis KBU60_12530 PF01592 NifU-like N terminal domain KBU60_12535 PF00266 Aminotransferase class-V KBU60_12540 PF02082 Transcriptional regulator KBU60_12545 PF00588 SpoU rRNA Methylase family KBU60_12550 PF00459 Inositol monophosphatase family KBU60_12555 PF02355 Protein export membrane protein KBU60_12555 PF07549 SecD/SecF GG Motif KBU60_12560 PF02355 Protein export membrane protein KBU60_12560 PF13721 SecD export protein N-terminal TM region KBU60_12560 PF07549 SecD/SecF GG Motif KBU60_12565 PF02699 Preprotein translocase subunit KBU60_12570 PF01702 Queuine tRNA-ribosyltransferase KBU60_12575 PF02547 Queuosine biosynthesis protein KBU60_12585 PF00571 CBS domain KBU60_12590 PF00463 Isocitrate lyase family KBU60_12595 PF01274 Malate synthase KBU60_12600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_12600 PF03466 LysR substrate binding domain KBU60_12605 PF10417 C-terminal domain of 1-Cys peroxiredoxin KBU60_12605 PF00578 AhpC/TSA family KBU60_12610 PF03932 CutC family KBU60_12615 PF03976 Polyphosphate kinase 2 (PPK2) KBU60_12620 PF01895 PhoU domain KBU60_12625 PF00005 ABC transporter KBU60_12630 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_12635 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_12640 PF02503 Polyphosphate kinase middle domain KBU60_12640 PF13090 Polyphosphate kinase C-terminal domain 2 KBU60_12640 PF17941 Polyphosphate kinase C-terminal domain 1 KBU60_12640 PF13089 Polyphosphate kinase N-terminal domain KBU60_12645 PF02541 Ppx/GppA phosphatase family KBU60_12650 PF12849 PBP superfamily domain KBU60_12655 PF11808 Phosphate regulon sensor protein PhoR KBU60_12655 PF00989 PAS fold KBU60_12655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_12655 PF00512 His Kinase A (phospho-acceptor) domain KBU60_12660 PF00072 Response regulator receiver domain KBU60_12660 PF00486 Transcriptional regulatory protein, C terminal KBU60_12665 PF04381 Putative exonuclease, RdgC KBU60_12670 PF01136 Peptidase family U32 KBU60_12670 PF16325 Peptidase family U32 C-terminal domain KBU60_12675 PF00037 4Fe-4S binding domain KBU60_12685 PF03411 Penicillin-insensitive murein endopeptidase KBU60_12730 PF10431 C-terminal, D2-small domain, of ClpB protein KBU60_12730 PF00004 ATPase family associated with various cellular activities (AAA) KBU60_12730 PF17871 AAA lid domain KBU60_12730 PF02861 Clp amino terminal domain, pathogenicity island component KBU60_12730 PF07724 AAA domain (Cdc48 subfamily) KBU60_12735 PF02578 Multi-copper polyphenol oxidoreductase laccase KBU60_12740 PF00849 RNA pseudouridylate synthase KBU60_12740 PF01479 S4 domain KBU60_12745 PF13525 Outer membrane lipoprotein KBU60_12750 PF01464 Transglycosylase SLT domain KBU60_12755 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein KBU60_12760 PF00800 Prephenate dehydratase KBU60_12760 PF01817 Chorismate mutase type II KBU60_12765 PF01931 Protein of unknown function DUF84 KBU60_12770 PF01371 Trp repressor protein KBU60_12775 PF01464 Transglycosylase SLT domain KBU60_12775 PF14718 Soluble lytic murein transglycosylase L domain KBU60_12780 PF12848 ABC transporter KBU60_12780 PF00005 ABC transporter KBU60_12785 PF07238 PilZ domain KBU60_12790 PF04225 Opacity-associated protein A LysM-like domain KBU60_12790 PF01551 Peptidase family M23 KBU60_12795 PF01817 Chorismate mutase type II KBU60_12795 PF02153 Prephenate dehydrogenase KBU60_12800 PF00793 DAHP synthetase I family KBU60_12805 PF00933 Glycosyl hydrolase family 3 N terminal domain KBU60_12810 PF03702 Anhydro-N-acetylmuramic acid kinase KBU60_12815 PF13580 SIS domain KBU60_12830 PF02554 Carbon starvation protein CstA KBU60_12835 PF07694 5TMR of 5TMR-LYT KBU60_12835 PF06580 Histidine kinase KBU60_12840 PF00072 Response regulator receiver domain KBU60_12840 PF04397 LytTr DNA-binding domain KBU60_12845 PF02401 LytB protein KBU60_12850 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KBU60_12855 PF01252 Signal peptidase (SPase) II KBU60_12860 PF08264 Anticodon-binding domain of tRNA KBU60_12860 PF00133 tRNA synthetases class I (I, L, M and V) KBU60_12860 PF06827 Zinc finger found in FPG and IleRS KBU60_12865 PF06574 FAD synthetase KBU60_12865 PF01687 Riboflavin kinase KBU60_12870 PF03023 Lipid II flippase MurJ KBU60_12875 PF01649 Ribosomal protein S20 KBU60_12880 PF01022 Bacterial regulatory protein, arsR family KBU60_12885 PF03466 LysR substrate binding domain KBU60_12885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_12890 PF02690 Na+/Pi-cotransporter KBU60_12900 PF00303 Thymidylate synthase KBU60_12905 PF01790 Prolipoprotein diacylglyceryl transferase KBU60_12910 PF01925 Sulfite exporter TauE/SafE KBU60_12915 PF05524 PEP-utilising enzyme, N-terminal KBU60_12915 PF02896 PEP-utilising enzyme, TIM barrel domain KBU60_12915 PF00391 PEP-utilising enzyme, mobile domain KBU60_12915 PF01590 GAF domain KBU60_12920 PF00293 NUDIX domain KBU60_12925 PF02976 DNA mismatch repair enzyme MutH KBU60_12935 PF00248 Aldo/keto reductase family KBU60_12945 PF02954 Bacterial regulatory protein, Fis family KBU60_12945 PF00158 Sigma-54 interaction domain KBU60_12945 PF00072 Response regulator receiver domain KBU60_12950 PF00152 tRNA synthetases class II (D, K and N) KBU60_12950 PF01336 OB-fold nucleic acid binding domain KBU60_12960 PF17768 RecJ OB domain KBU60_12960 PF01368 DHH family KBU60_12960 PF02272 DHHA1 domain KBU60_12965 PF13098 Thioredoxin-like domain KBU60_12965 PF10411 Disulfide bond isomerase protein N-terminus KBU60_12970 PF00589 Phage integrase family KBU60_12970 PF02899 Phage integrase, N-terminal SAM-like domain KBU60_12975 PF00258 Flavodoxin KBU60_12980 PF05525 Branched-chain amino acid transport protein KBU60_12985 PF05175 Methyltransferase small domain KBU60_12990 PF00270 DEAD/DEAH box helicase KBU60_12990 PF00271 Helicase conserved C-terminal domain KBU60_12995 PF03883 Peroxide stress protein YaaA KBU60_13000 PF01235 Sodium:alanine symporter family KBU60_13015 PF03167 Uracil DNA glycosylase superfamily KBU60_13020 PF01261 Xylose isomerase-like TIM barrel KBU60_13025 PF01228 Glycine radical KBU60_13030 PF00291 Pyridoxal-phosphate dependent enzyme KBU60_13030 PF14821 Threonine synthase N terminus KBU60_13035 PF08544 GHMP kinases C terminal KBU60_13035 PF00288 GHMP kinases N terminal domain KBU60_13040 PF00696 Amino acid kinase family KBU60_13040 PF01842 ACT domain KBU60_13040 PF13840 ACT domain KBU60_13040 PF00742 Homoserine dehydrogenase KBU60_13040 PF03447 Homoserine dehydrogenase, NAD binding domain KBU60_13050 PF03737 Aldolase/RraA KBU60_13060 PF00486 Transcriptional regulatory protein, C terminal KBU60_13060 PF00072 Response regulator receiver domain KBU60_13070 PF00989 PAS fold KBU60_13070 PF00072 Response regulator receiver domain KBU60_13070 PF01627 Hpt domain KBU60_13070 PF18415 Histidine kinase receptor ArcB trans-membrane domain KBU60_13070 PF00512 His Kinase A (phospho-acceptor) domain KBU60_13070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_13075 PF00990 Diguanylate cyclase, GGDEF domain KBU60_13075 PF01590 GAF domain KBU60_13075 PF00563 EAL domain KBU60_13075 PF00360 Phytochrome region KBU60_13080 PF04055 Radical SAM superfamily KBU60_13080 PF16199 Radical_SAM C-terminal domain KBU60_13085 PF00310 Glutamine amidotransferases class-II KBU60_13085 PF04898 Glutamate synthase central domain KBU60_13085 PF01645 Conserved region in glutamate synthase KBU60_13085 PF01493 GXGXG motif KBU60_13090 PF07992 Pyridine nucleotide-disulphide oxidoreductase KBU60_13090 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster KBU60_13095 PF00310 Glutamine amidotransferases class-II KBU60_13095 PF04898 Glutamate synthase central domain KBU60_13095 PF01645 Conserved region in glutamate synthase KBU60_13095 PF01493 GXGXG motif KBU60_13100 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster KBU60_13100 PF07992 Pyridine nucleotide-disulphide oxidoreductase KBU60_13110 PF01048 Phosphorylase superfamily KBU60_13115 PF17113 Regulatory signalling modulator protein AmpE KBU60_13115 PF03186 CobD/Cbib protein KBU60_13120 PF01497 Periplasmic binding protein KBU60_13125 PF03458 UPF0126 domain KBU60_13130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_13130 PF03466 LysR substrate binding domain KBU60_13135 PF01925 Sulfite exporter TauE/SafE KBU60_13150 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain KBU60_13150 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KBU60_13150 PF02142 MGS-like domain KBU60_13155 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain KBU60_13155 PF00117 Glutamine amidotransferase class-I KBU60_13160 PF05173 Dihydrodipicolinate reductase, C-terminus KBU60_13160 PF01113 Dihydrodipicolinate reductase, N-terminus KBU60_13165 PF00293 NUDIX domain KBU60_13170 PF02810 SEC-C motif KBU60_13170 PF07517 SecA DEAD-like domain KBU60_13170 PF01043 SecA preprotein cross-linking domain KBU60_13170 PF07516 SecA Wing and Scaffold domain KBU60_13180 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase KBU60_13185 PF12327 FtsZ family, C-terminal domain KBU60_13185 PF00091 Tubulin/FtsZ family, GTPase domain KBU60_13190 PF02491 SHS2 domain inserted in FTSA KBU60_13195 PF08478 POTRA domain, FtsQ-type KBU60_13195 PF03799 Cell division protein FtsQ KBU60_13200 PF01225 Mur ligase family, catalytic domain KBU60_13200 PF08245 Mur ligase middle domain KBU60_13200 PF02875 Mur ligase family, glutamate ligase domain KBU60_13205 PF04101 Glycosyltransferase family 28 C-terminal domain KBU60_13205 PF03033 Glycosyltransferase family 28 N-terminal domain KBU60_13210 PF01098 Cell cycle protein KBU60_13215 PF02875 Mur ligase family, glutamate ligase domain KBU60_13215 PF08245 Mur ligase middle domain KBU60_13220 PF00953 Glycosyl transferase family 4 KBU60_13220 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 KBU60_13225 PF08245 Mur ligase middle domain KBU60_13225 PF02875 Mur ligase family, glutamate ligase domain KBU60_13225 PF01225 Mur ligase family, catalytic domain KBU60_13230 PF01225 Mur ligase family, catalytic domain KBU60_13230 PF08245 Mur ligase middle domain KBU60_13230 PF02875 Mur ligase family, glutamate ligase domain KBU60_13235 PF03717 Penicillin-binding Protein dimerisation domain KBU60_13235 PF00905 Penicillin binding protein transpeptidase domain KBU60_13240 PF04999 Cell division protein FtsL KBU60_13245 PF01795 MraW methylase family KBU60_13255 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KBU60_13260 PF04348 LppC putative lipoprotein KBU60_13265 PF02021 Uncharacterised protein family UPF0102 KBU60_13270 PF13580 SIS domain KBU60_13275 PF04972 BON domain KBU60_13280 PF04386 Stringent starvation protein B KBU60_13285 PF00043 Glutathione S-transferase, C-terminal domain KBU60_13285 PF02798 Glutathione S-transferase, N-terminal domain KBU60_13290 PF02167 Cytochrome C1 family KBU60_13295 PF00032 Cytochrome b(C-terminal)/b6/petD KBU60_13295 PF00033 Cytochrome b/b6/petB KBU60_13300 PF00355 Rieske [2Fe-2S] domain KBU60_13300 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal KBU60_13305 PF00380 Ribosomal protein S9/S16 KBU60_13310 PF00572 Ribosomal protein L13 KBU60_13315 PF03969 AFG1-like ATPase KBU60_13320 PF06295 Protein of unknown function (DUF1043) KBU60_13325 PF00595 PDZ domain KBU60_13330 PF13180 PDZ domain KBU60_13335 PF03989 DNA gyrase C-terminal domain, beta-propeller KBU60_13335 PF00521 DNA gyrase/topoisomerase IV, subunit A KBU60_13340 PF00204 DNA gyrase B KBU60_13340 PF00986 DNA gyrase B subunit, carboxyl terminus KBU60_13340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_13340 PF01751 Toprim domain KBU60_13345 PF05728 Uncharacterised protein family (UPF0227) KBU60_13350 PF00149 Calcineurin-like phosphoesterase KBU60_13355 PF06853 Protein of unknown function (DUF1249) KBU60_13360 PF00293 NUDIX domain KBU60_13365 PF02321 Outer membrane efflux protein KBU60_13370 PF01467 Cytidylyltransferase-like KBU60_13370 PF00294 pfkB family carbohydrate kinase KBU60_13375 PF08335 GlnD PII-uridylyltransferase KBU60_13375 PF03710 Glutamate-ammonia ligase adenylyltransferase KBU60_13380 PF00672 HAMP domain KBU60_13380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KBU60_13390 PF01928 CYTH domain KBU60_13395 PF01865 Protein of unknown function DUF47 KBU60_13400 PF01384 Phosphate transporter family KBU60_13405 PF08239 Bacterial SH3 domain KBU60_13415 PF13401 AAA domain KBU60_13415 PF01471 Putative peptidoglycan binding domain KBU60_13420 PF01743 Poly A polymerase head domain KBU60_13420 PF01966 HD domain KBU60_13420 PF12627 Probable RNA and SrmB- binding site of polymerase A KBU60_13425 PF02673 Bacitracin resistance protein BacA KBU60_13430 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) KBU60_13435 PF02152 Dihydroneopterin aldolase KBU60_13440 PF02660 Glycerol-3-phosphate acyltransferase KBU60_13445 PF12697 Alpha/beta hydrolase family KBU60_13450 PF00814 Glycoprotease family KBU60_13455 PF01165 Ribosomal protein S21 KBU60_13460 PF09424 Yqey-like protein KBU60_13465 PF01807 CHC2 zinc finger KBU60_13465 PF08275 DNA primase catalytic core, N-terminal domain KBU60_13465 PF08278 DNA primase DnaG DnaB-binding KBU60_13465 PF10410 DnaB-helicase binding domain of primase KBU60_13470 PF03979 Sigma-70 factor, region 1.1 KBU60_13470 PF00140 Sigma-70 factor, region 1.2 KBU60_13470 PF04542 Sigma-70 region 2 KBU60_13470 PF04545 Sigma-70, region 4 KBU60_13470 PF04546 Sigma-70, non-essential region KBU60_13470 PF04539 Sigma-70 region 3 KBU60_13480 PF00589 Phage integrase family KBU60_13480 PF13356 Arm DNA-binding domain KBU60_13525 PF04002 RadC-like JAB domain KBU60_13585 PF03180 NLPA lipoprotein KBU60_13595 PF12833 Helix-turn-helix domain KBU60_13625 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KBU60_13625 PF02378 Phosphotransferase system, EIIC KBU60_13625 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KBU60_13630 PF01232 Mannitol dehydrogenase Rossmann domain KBU60_13630 PF08125 Mannitol dehydrogenase C-terminal domain KBU60_13635 PF05068 Mannitol repressor KBU60_13640 PF13419 Haloacid dehalogenase-like hydrolase KBU60_13645 PF00672 HAMP domain KBU60_13645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_13645 PF00512 His Kinase A (phospho-acceptor) domain KBU60_13650 PF00486 Transcriptional regulatory protein, C terminal KBU60_13650 PF00072 Response regulator receiver domain KBU60_13660 PF01380 SIS domain KBU60_13665 PF00455 DeoR C terminal sensor domain KBU60_13665 PF08220 DeoR-like helix-turn-helix domain KBU60_13670 PF02887 Pyruvate kinase, alpha/beta domain KBU60_13670 PF00224 Pyruvate kinase, barrel domain KBU60_13680 PF00990 Diguanylate cyclase, GGDEF domain KBU60_13685 PF10369 Small subunit of acetolactate synthase KBU60_13690 PF00205 Thiamine pyrophosphate enzyme, central domain KBU60_13690 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KBU60_13690 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KBU60_13695 PF00501 AMP-binding enzyme KBU60_13700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_13700 PF03466 LysR substrate binding domain KBU60_13710 PF01569 PAP2 superfamily KBU60_13720 PF00682 HMGL-like KBU60_13720 PF08502 LeuA allosteric (dimerisation) domain KBU60_13725 PF00180 Isocitrate/isopropylmalate dehydrogenase KBU60_13730 PF00330 Aconitase family (aconitate hydratase) KBU60_13735 PF00694 Aconitase C-terminal domain KBU60_13745 PF05099 Tellurite resistance protein TerB KBU60_13745 PF00226 DnaJ domain KBU60_13750 PF04453 LPS transport system D KBU60_13750 PF03968 OstA-like protein KBU60_13755 PF09312 SurA N-terminal domain KBU60_13760 PF04166 Pyridoxal phosphate biosynthetic protein PdxA KBU60_13765 PF00398 Ribosomal RNA adenine dimethylase KBU60_13770 PF04379 ApaG domain KBU60_13775 PF00149 Calcineurin-like phosphoesterase KBU60_13780 PF00186 Dihydrofolate reductase KBU60_13785 PF12821 Threonine/Serine exporter, ThrE KBU60_13790 PF06738 Putative threonine/serine exporter KBU60_13795 PF01018 GTP1/OBG KBU60_13795 PF01926 50S ribosome-binding GTPase KBU60_13800 PF01016 Ribosomal L27 protein KBU60_13805 PF00829 Ribosomal prokaryotic L21 protein KBU60_13810 PF00348 Polyprenyl synthetase KBU60_13820 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KBU60_13820 PF00056 lactate/malate dehydrogenase, NAD binding domain KBU60_13825 PF02863 Arginine repressor, C-terminal domain KBU60_13825 PF01316 Arginine repressor, DNA binding domain KBU60_13830 PF16868 NMT1-like family KBU60_13845 PF00005 ABC transporter KBU60_13850 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_13860 PF02441 Flavoprotein KBU60_13865 PF01225 Mur ligase family, catalytic domain KBU60_13865 PF02875 Mur ligase family, glutamate ligase domain KBU60_13865 PF08245 Mur ligase middle domain KBU60_13870 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain KBU60_13875 PF00719 Inorganic pyrophosphatase KBU60_13885 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like KBU60_13890 PF04357 TamB, inner membrane protein subunit of TAM complex KBU60_13895 PF01103 Surface antigen KBU60_13895 PF17243 POTRA domain TamA domain 1 KBU60_13900 PF01625 Peptide methionine sulfoxide reductase KBU60_13905 PF06526 Protein of unknown function (DUF1107) KBU60_13910 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) KBU60_13915 PF10795 Protein of unknown function (DUF2607) KBU60_13925 PF00005 ABC transporter KBU60_13950 PF02080 TrkA-C domain KBU60_13950 PF03600 Citrate transporter KBU60_13955 PF00009 Elongation factor Tu GTP binding domain KBU60_13960 PF01507 Phosphoadenosine phosphosulfate reductase family KBU60_13965 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KBU60_13965 PF10414 Sirohaem synthase dimerisation region KBU60_13965 PF14824 Sirohaem biosynthesis protein central KBU60_13970 PF02872 5'-nucleotidase, C-terminal domain KBU60_13970 PF00149 Calcineurin-like phosphoesterase KBU60_13980 PF03880 DbpA RNA binding domain KBU60_13980 PF00270 DEAD/DEAH box helicase KBU60_13980 PF00271 Helicase conserved C-terminal domain KBU60_13985 PF13673 Acetyltransferase (GNAT) domain KBU60_13995 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KBU60_13995 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KBU60_14005 PF01196 Ribosomal protein L17 KBU60_14010 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain KBU60_14010 PF01000 RNA polymerase Rpb3/RpoA insert domain KBU60_14010 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain KBU60_14015 PF01479 S4 domain KBU60_14015 PF00163 Ribosomal protein S4/S9 N-terminal domain KBU60_14020 PF00411 Ribosomal protein S11 KBU60_14025 PF00416 Ribosomal protein S13/S18 KBU60_14030 PF00444 Ribosomal protein L36 KBU60_14035 PF00344 SecY translocase KBU60_14040 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A KBU60_14045 PF00327 Ribosomal protein L30p/L7e KBU60_14050 PF00333 Ribosomal protein S5, N-terminal domain KBU60_14050 PF03719 Ribosomal protein S5, C-terminal domain KBU60_14055 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast KBU60_14060 PF00347 Ribosomal protein L6 KBU60_14065 PF00410 Ribosomal protein S8 KBU60_14070 PF00253 Ribosomal protein S14p/S29e KBU60_14075 PF00673 ribosomal L5P family C-terminus KBU60_14075 PF00281 Ribosomal protein L5 KBU60_14080 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 KBU60_14080 PF00467 KOW motif KBU60_14085 PF00238 Ribosomal protein L14p/L23e KBU60_14090 PF00366 Ribosomal protein S17 KBU60_14095 PF00831 Ribosomal L29 protein KBU60_14100 PF00252 Ribosomal protein L16p/L10e KBU60_14105 PF07650 KH domain KBU60_14105 PF00189 Ribosomal protein S3, C-terminal domain KBU60_14110 PF00237 Ribosomal protein L22p/L17e KBU60_14115 PF00203 Ribosomal protein S19 KBU60_14120 PF00181 Ribosomal Proteins L2, RNA binding domain KBU60_14120 PF03947 Ribosomal Proteins L2, C-terminal domain KBU60_14125 PF00276 Ribosomal protein L23 KBU60_14130 PF00573 Ribosomal protein L4/L1 family KBU60_14135 PF00297 Ribosomal protein L3 KBU60_14140 PF00338 Ribosomal protein S10p/S20e KBU60_14145 PF01197 Ribosomal protein L31 KBU60_14150 PF00270 DEAD/DEAH box helicase KBU60_14150 PF00271 Helicase conserved C-terminal domain KBU60_14150 PF17764 3′ DNA-binding domain (3′BD) KBU60_14150 PF18074 Primosomal protein N C-terminal domain KBU60_14150 PF18319 PriA DNA helicase Cys-rich region (CRR) domain KBU60_14155 PF00356 Bacterial regulatory proteins, lacI family KBU60_14165 PF00227 Proteasome subunit KBU60_14170 PF00004 ATPase family associated with various cellular activities (AAA) KBU60_14170 PF07724 AAA domain (Cdc48 subfamily) KBU60_14175 PF01040 UbiA prenyltransferase family KBU60_14180 PF03737 Aldolase/RraA KBU60_14185 PF06005 Cell division protein ZapB KBU60_14190 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded KBU60_14195 PF00455 DeoR C terminal sensor domain KBU60_14195 PF08220 DeoR-like helix-turn-helix domain KBU60_14215 PF00121 Triosephosphate isomerase KBU60_14220 PF10996 Beta-Casp domain KBU60_14220 PF00753 Metallo-beta-lactamase superfamily KBU60_14220 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain KBU60_14225 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KBU60_14225 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KBU60_14225 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KBU60_14230 PF00953 Glycosyl transferase family 4 KBU60_14235 PF01238 Phosphomannose isomerase type I KBU60_14240 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KBU60_14240 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KBU60_14240 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KBU60_14240 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KBU60_14245 PF00483 Nucleotidyl transferase KBU60_14245 PF01050 Mannose-6-phosphate isomerase KBU60_14260 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KBU60_14260 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KBU60_14275 PF00132 Bacterial transferase hexapeptide (six repeats) KBU60_14305 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KBU60_14305 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KBU60_14305 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KBU60_14310 PF02350 UDP-N-acetylglucosamine 2-epimerase KBU60_14345 PF06082 Exopolysaccharide biosynthesis protein YbjH KBU60_14350 PF01370 NAD dependent epimerase/dehydratase family KBU60_14355 PF03279 Bacterial lipid A biosynthesis acyltransferase KBU60_14360 PF01075 Glycosyltransferase family 9 (heptosyltransferase) KBU60_14365 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) KBU60_14375 PF13439 Glycosyltransferase Family 4 KBU60_14375 PF00534 Glycosyl transferases group 1 KBU60_14390 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family KBU60_14395 PF01575 MaoC like domain KBU60_14400 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 KBU60_14400 PF00132 Bacterial transferase hexapeptide (six repeats) KBU60_14405 PF05523 WxcM-like, C-terminal KBU60_14410 PF00483 Nucleotidyl transferase KBU60_14415 PF16363 GDP-mannose 4,6 dehydratase KBU60_14425 PF01219 Prokaryotic diacylglycerol kinase KBU60_14430 PF01075 Glycosyltransferase family 9 (heptosyltransferase) KBU60_14435 PF00535 Glycosyl transferase family 2 KBU60_14440 PF00535 Glycosyl transferase family 2 KBU60_14445 PF05686 Glycosyl transferase family 90 KBU60_14450 PF01467 Cytidylyltransferase-like KBU60_14455 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain KBU60_14455 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain KBU60_14455 PF06827 Zinc finger found in FPG and IleRS KBU60_14465 PF00471 Ribosomal protein L33 KBU60_14470 PF00830 Ribosomal L28 family KBU60_14475 PF04002 RadC-like JAB domain KBU60_14480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KBU60_14480 PF00672 HAMP domain KBU60_14480 PF17200 Single Cache domain 2 KBU60_14485 PF02441 Flavoprotein KBU60_14485 PF04127 DNA / pantothenate metabolism flavoprotein KBU60_14490 PF00440 Bacterial regulatory proteins, tetR family KBU60_14495 PF03279 Bacterial lipid A biosynthesis acyltransferase KBU60_14500 PF00156 Phosphoribosyl transferase domain KBU60_14505 PF03725 3' exoribonuclease family, domain 2 KBU60_14505 PF01138 3' exoribonuclease family, domain 1 KBU60_14510 PF03755 YicC-like family, N-terminal region KBU60_14510 PF08340 Domain of unknown function (DUF1732) KBU60_14520 PF00535 Glycosyl transferase family 2 KBU60_14525 PF04138 GtrA-like protein KBU60_14575 PF00563 EAL domain KBU60_14575 PF00990 Diguanylate cyclase, GGDEF domain KBU60_14575 PF13426 PAS domain KBU60_14585 PF00005 ABC transporter KBU60_14585 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KBU60_14590 PF00005 ABC transporter KBU60_14590 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KBU60_14595 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KBU60_14600 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_14600 PF12911 N-terminal TM domain of oligopeptide transport permease C KBU60_14605 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_14610 PF07715 TonB-dependent Receptor Plug Domain KBU60_14610 PF00593 TonB dependent receptor KBU60_14625 PF01618 MotA/TolQ/ExbB proton channel family KBU60_14630 PF02472 Biopolymer transport protein ExbD/TolR KBU60_14645 PF00625 Guanylate kinase KBU60_14650 PF01192 RNA polymerase Rpb6 KBU60_14655 PF04607 Region found in RelA / SpoT proteins KBU60_14655 PF02824 TGS domain KBU60_14655 PF13291 ACT domain KBU60_14660 PF00588 SpoU rRNA Methylase family KBU60_14660 PF12105 SpoU, rRNA methylase, C-terminal KBU60_14665 PF00270 DEAD/DEAH box helicase KBU60_14665 PF17191 RecG wedge domain KBU60_14665 PF00271 Helicase conserved C-terminal domain KBU60_14670 PF00860 Permease family KBU60_14675 PF00672 HAMP domain KBU60_14675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_14675 PF00512 His Kinase A (phospho-acceptor) domain KBU60_14680 PF00072 Response regulator receiver domain KBU60_14680 PF00486 Transcriptional regulatory protein, C terminal KBU60_14690 PF03449 Transcription elongation factor, N-terminal KBU60_14690 PF01272 Transcription elongation factor, GreA/GreB, C-term KBU60_14700 PF17674 HHH domain KBU60_14700 PF00575 S1 RNA binding domain KBU60_14700 PF09371 Tex-like protein N-terminal domain KBU60_14700 PF16921 Tex protein YqgF-like domain KBU60_14710 PF00561 alpha/beta hydrolase fold KBU60_14715 PF00156 Phosphoribosyl transferase domain KBU60_14720 PF01106 NifU-like domain KBU60_14720 PF01521 Iron-sulphur cluster biosynthesis KBU60_14725 PF00293 NUDIX domain KBU60_14730 PF00459 Inositol monophosphatase family KBU60_14735 PF01203 Type II secretion system (T2SS), protein N KBU60_14740 PF04612 Type II secretion system (T2SS), protein M KBU60_14745 PF12693 GspL periplasmic domain KBU60_14745 PF05134 Type II secretion system (T2SS), protein L KBU60_14750 PF03934 Type II secretion system (T2SS), protein K KBU60_14755 PF11612 Type II secretion system (T2SS), protein J KBU60_14755 PF07963 Prokaryotic N-terminal methylation motif KBU60_14760 PF02501 Type II secretion system (T2SS), protein I KBU60_14760 PF07963 Prokaryotic N-terminal methylation motif KBU60_14765 PF12019 Type II transport protein GspH KBU60_14770 PF08334 Type II secretion system (T2SS), protein G KBU60_14770 PF07963 Prokaryotic N-terminal methylation motif KBU60_14775 PF00482 Type II secretion system (T2SS), protein F KBU60_14780 PF00437 Type II/IV secretion system protein KBU60_14785 PF00263 Bacterial type II and III secretion system protein KBU60_14785 PF03958 Bacterial type II/III secretion system short domain KBU60_14790 PF11356 Type II secretion system protein C KBU60_14795 PF01479 S4 domain KBU60_14800 PF01430 Hsp33 protein KBU60_14805 PF01293 Phosphoenolpyruvate carboxykinase KBU60_14815 PF00583 Acetyltransferase (GNAT) family KBU60_14815 PF09500 Putative thioesterase (yiiD_Cterm) KBU60_14820 PF02580 D-Tyr-tRNA(Tyr) deacylase KBU60_14825 PF03631 Virulence factor BrkB KBU60_14840 PF00679 Elongation factor G C-terminus KBU60_14840 PF00009 Elongation factor Tu GTP binding domain KBU60_14840 PF03144 Elongation factor Tu domain 2 KBU60_14845 PF00120 Glutamine synthetase, catalytic domain KBU60_14845 PF03951 Glutamine synthetase, beta-Grasp domain KBU60_14855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_14855 PF00512 His Kinase A (phospho-acceptor) domain KBU60_14855 PF00989 PAS fold KBU60_14860 PF02954 Bacterial regulatory protein, Fis family KBU60_14860 PF00072 Response regulator receiver domain KBU60_14860 PF00158 Sigma-54 interaction domain KBU60_14865 PF00990 Diguanylate cyclase, GGDEF domain KBU60_14865 PF00563 EAL domain KBU60_14865 PF03707 Bacterial signalling protein N terminal repeat KBU60_14870 PF00962 Adenosine/AMP deaminase KBU60_14875 PF04055 Radical SAM superfamily KBU60_14875 PF06969 HemN C-terminal domain KBU60_14880 PF10675 Protein of unknown function (DUF2489) KBU60_14885 PF04220 Der GTPase activator (YihI) KBU60_14895 PF00034 Cytochrome c KBU60_14900 PF01926 50S ribosome-binding GTPase KBU60_14905 PF01367 5'-3' exonuclease, C-terminal SAM fold KBU60_14905 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain KBU60_14905 PF00476 DNA polymerase family A KBU60_14905 PF01612 3'-5' exonuclease KBU60_14920 PF00490 Delta-aminolevulinic acid dehydratase KBU60_14925 PF01026 TatD related DNase KBU60_14930 PF00902 Sec-independent protein translocase protein (TatC) KBU60_14935 PF02416 mttA/Hcf106 family KBU60_14940 PF02416 mttA/Hcf106 family KBU60_14945 PF03109 ABC1 family KBU60_14950 PF02036 SCP-2 sterol transfer family KBU60_14955 PF01209 ubiE/COQ5 methyltransferase family KBU60_14960 PF02646 RmuC family KBU60_14970 PF03707 Bacterial signalling protein N terminal repeat KBU60_14970 PF00563 EAL domain KBU60_14970 PF00990 Diguanylate cyclase, GGDEF domain KBU60_14975 PF01594 AI-2E family transporter KBU60_15025 PF04972 BON domain KBU60_15030 PF01590 GAF domain KBU60_15030 PF02954 Bacterial regulatory protein, Fis family KBU60_15030 PF00158 Sigma-54 interaction domain KBU60_15040 PF10625 Universal stress protein B (UspB) KBU60_15045 PF00210 Ferritin-like domain KBU60_15050 PF00582 Universal stress protein family KBU60_15055 PF00892 EamA-like transporter family KBU60_15065 PF04445 Putative SAM-dependent methyltransferase KBU60_15070 PF00563 EAL domain KBU60_15070 PF00990 Diguanylate cyclase, GGDEF domain KBU60_15070 PF08448 PAS fold KBU60_15075 PF01037 Lrp/AsnC ligand binding domain KBU60_15080 PF01432 Peptidase family M3 KBU60_15085 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ KBU60_15090 PF07992 Pyridine nucleotide-disulphide oxidoreductase KBU60_15090 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KBU60_15095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_15095 PF03466 LysR substrate binding domain KBU60_15100 PF01048 Phosphorylase superfamily KBU60_15105 PF01081 KDPG and KHG aldolase KBU60_15110 PF02447 GntP family permease KBU60_15115 PF01202 Shikimate kinase KBU60_15120 PF00920 Dehydratase family KBU60_15125 PF00893 Small Multidrug Resistance protein KBU60_15130 PF00893 Small Multidrug Resistance protein KBU60_15135 PF03466 LysR substrate binding domain KBU60_15135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_15140 PF00356 Bacterial regulatory proteins, lacI family KBU60_15140 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family KBU60_15175 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_15175 PF12911 N-terminal TM domain of oligopeptide transport permease C KBU60_15180 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_15185 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KBU60_15190 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KBU60_15190 PF00005 ABC transporter KBU60_15195 PF13419 Haloacid dehalogenase-like hydrolase KBU60_15225 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KBU60_15230 PF13361 UvrD-like helicase C-terminal domain KBU60_15230 PF00580 UvrD/REP helicase N-terminal domain KBU60_15235 PF00440 Bacterial regulatory proteins, tetR family KBU60_15235 PF16295 Tetracyclin repressor-like, C-terminal domain KBU60_15240 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KBU60_15245 PF00873 AcrB/AcrD/AcrF family KBU60_15250 PF04380 Membrane fusogenic activity KBU60_15255 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain KBU60_15255 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain KBU60_15260 PF03466 LysR substrate binding domain KBU60_15260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_15295 PF00132 Bacterial transferase hexapeptide (six repeats) KBU60_15300 PF07369 Protein of unknown function (DUF1488) KBU60_15305 PF01488 Shikimate / quinate 5-dehydrogenase KBU60_15305 PF08501 Shikimate dehydrogenase substrate binding domain KBU60_15305 PF18317 Shikimate 5'-dehydrogenase C-terminal domain KBU60_15310 PF01218 Coproporphyrinogen III oxidase KBU60_15315 PF01300 Telomere recombination KBU60_15320 PF00731 AIR carboxylase KBU60_15325 PF02222 ATP-grasp domain KBU60_15325 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain KBU60_15330 PF01396 Topoisomerase DNA binding C4 zinc finger KBU60_15335 PF04361 Protein of unknown function (DUF494) KBU60_15340 PF02481 DNA recombination-mediator protein A KBU60_15340 PF17782 DprA winged helix domain KBU60_15350 PF01327 Polypeptide deformylase KBU60_15355 PF00551 Formyl transferase KBU60_15355 PF02911 Formyl transferase, C-terminal domain KBU60_15360 PF01189 16S rRNA methyltransferase RsmB/F KBU60_15360 PF01029 NusB family KBU60_15365 PF02254 TrkA-N domain KBU60_15365 PF02080 TrkA-C domain KBU60_15370 PF02386 Cation transport protein KBU60_15380 PF03006 Haemolysin-III related KBU60_15385 PF07070 SpoOM protein KBU60_15395 PF06288 Protein of unknown function (DUF1040) KBU60_15400 PF12801 4Fe-4S binding domain KBU60_15400 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase KBU60_15400 PF13746 4Fe-4S dicluster domain KBU60_15405 PF01636 Phosphotransferase enzyme family KBU60_15410 PF01323 DSBA-like thioredoxin domain KBU60_15415 PF01553 Acyltransferase KBU60_15425 PF01078 Magnesium chelatase, subunit ChlI KBU60_15425 PF13335 Magnesium chelatase, subunit ChlI C-terminal KBU60_15430 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KBU60_15430 PF00205 Thiamine pyrophosphate enzyme, central domain KBU60_15430 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KBU60_15440 PF01063 Amino-transferase class IV KBU60_15445 PF00920 Dehydratase family KBU60_15450 PF00291 Pyridoxal-phosphate dependent enzyme KBU60_15450 PF00585 C-terminal regulatory domain of Threonine dehydratase KBU60_15455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_15455 PF03466 LysR substrate binding domain KBU60_15460 PF07690 Major Facilitator Superfamily KBU60_15465 PF00497 Bacterial extracellular solute-binding proteins, family 3 KBU60_15470 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_15475 PF00132 Bacterial transferase hexapeptide (six repeats) KBU60_15475 PF12804 MobA-like NTP transferase domain KBU60_15480 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain KBU60_15480 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain KBU60_15485 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KBU60_15485 PF02874 ATP synthase alpha/beta family, beta-barrel domain KBU60_15490 PF00231 ATP synthase KBU60_15495 PF02874 ATP synthase alpha/beta family, beta-barrel domain KBU60_15495 PF00306 ATP synthase alpha/beta chain, C terminal domain KBU60_15495 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KBU60_15500 PF00213 ATP synthase delta (OSCP) subunit KBU60_15505 PF00430 ATP synthase B/B' CF(0) KBU60_15510 PF00137 ATP synthase subunit C KBU60_15515 PF00119 ATP synthase A chain KBU60_15520 PF03899 ATP synthase I chain KBU60_15525 PF17762 HTH domain found in ParB protein KBU60_15525 PF02195 ParB-like nuclease domain KBU60_15530 PF13614 AAA domain KBU60_15535 PF02527 rRNA small subunit methyltransferase G KBU60_15540 PF01134 Glucose inhibited division protein A KBU60_15540 PF13932 GidA associated domain KBU60_15545 PF00258 Flavodoxin KBU60_15550 PF01926 50S ribosome-binding GTPase KBU60_15550 PF12631 MnmE helical domain KBU60_15550 PF10396 GTP-binding protein TrmE N-terminus KBU60_15555 PF14849 YidC periplasmic domain KBU60_15555 PF02096 60Kd inner membrane protein KBU60_15560 PF01809 Putative membrane protein insertion efficiency factor KBU60_15565 PF00825 Ribonuclease P KBU60_15570 PF00468 Ribosomal protein L34 KBU60_15575 PF00005 ABC transporter KBU60_15580 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_15585 PF00497 Bacterial extracellular solute-binding proteins, family 3 KBU60_15600 PF01272 Transcription elongation factor, GreA/GreB, C-term KBU60_15600 PF14760 Rnk N-terminus KBU60_15605 PF04324 BFD-like [2Fe-2S] binding domain KBU60_15605 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KBU60_15605 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KBU60_15605 PF07992 Pyridine nucleotide-disulphide oxidoreductase KBU60_15605 PF18267 Rubredoxin NAD+ reductase C-terminal domain KBU60_15610 PF13806 Rieske-like [2Fe-2S] domain KBU60_15615 PF01226 Formate/nitrite transporter KBU60_15620 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KBU60_15620 PF10414 Sirohaem synthase dimerisation region KBU60_15620 PF14824 Sirohaem biosynthesis protein central KBU60_15635 PF03605 Anaerobic c4-dicarboxylate membrane transporter KBU60_15645 PF07715 TonB-dependent Receptor Plug Domain KBU60_15645 PF00593 TonB dependent receptor KBU60_15660 PF11756 Nitrous oxide-stimulated promoter KBU60_15665 PF01554 MatE KBU60_15670 PF07495 Y_Y_Y domain KBU60_15670 PF00072 Response regulator receiver domain KBU60_15670 PF07494 Two component regulator propeller KBU60_15670 PF00512 His Kinase A (phospho-acceptor) domain KBU60_15670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_15670 PF12833 Helix-turn-helix domain KBU60_15675 PF07690 Major Facilitator Superfamily KBU60_15680 PF00085 Thioredoxin KBU60_15685 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KBU60_15685 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KBU60_15705 PF01238 Phosphomannose isomerase type I KBU60_15710 PF07690 Major Facilitator Superfamily KBU60_15715 PF07730 Histidine kinase KBU60_15715 PF05231 MASE1 KBU60_15715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_15720 PF00196 Bacterial regulatory proteins, luxR family KBU60_15720 PF00072 Response regulator receiver domain KBU60_15725 PF07690 Major Facilitator Superfamily KBU60_15730 PF02634 FdhD/NarQ family KBU60_15735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_15735 PF03466 LysR substrate binding domain KBU60_15740 PF00384 Molybdopterin oxidoreductase KBU60_15745 PF07992 Pyridine nucleotide-disulphide oxidoreductase KBU60_15745 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KBU60_15760 PF04143 Sulphur transport KBU60_15770 PF00873 AcrB/AcrD/AcrF family KBU60_15775 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KBU60_15785 PF03477 ATP cone domain KBU60_15785 PF13597 Anaerobic ribonucleoside-triphosphate reductase KBU60_15795 PF01554 MatE KBU60_15800 PF12833 Helix-turn-helix domain KBU60_15805 PF00155 Aminotransferase class I and II KBU60_15810 PF08443 RimK-like ATP-grasp domain KBU60_15810 PF18030 RimK PreATP-grasp domain KBU60_15820 PF04076 Bacterial OB fold (BOF) protein KBU60_15825 PF07685 CobB/CobQ-like glutamine amidotransferase domain KBU60_15835 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_15840 PF03459 TOBE domain KBU60_15840 PF00005 ABC transporter KBU60_15850 PF00563 EAL domain KBU60_15850 PF01590 GAF domain KBU60_15850 PF00360 Phytochrome region KBU60_15850 PF00990 Diguanylate cyclase, GGDEF domain KBU60_15860 PF00990 Diguanylate cyclase, GGDEF domain KBU60_15875 PF05222 Alanine dehydrogenase/PNT, N-terminal domain KBU60_15875 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch KBU60_15875 PF01262 Alanine dehydrogenase/PNT, C-terminal domain KBU60_15880 PF02233 NAD(P) transhydrogenase beta subunit KBU60_15890 PF00486 Transcriptional regulatory protein, C terminal KBU60_15890 PF00072 Response regulator receiver domain KBU60_15905 PF03701 Uncharacterised protein family (UPF0181) KBU60_15910 PF00582 Universal stress protein family KBU60_15920 PF03466 LysR substrate binding domain KBU60_15920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_15955 PF00263 Bacterial type II and III secretion system protein KBU60_15955 PF03958 Bacterial type II/III secretion system short domain KBU60_15985 PF05840 Bacteriophage replication gene A protein (GPA) KBU60_16050 PF01253 Translation initiation factor SUI1 KBU60_16060 PF01820 D-ala D-ala ligase N-terminus KBU60_16060 PF07478 D-ala D-ala ligase C-terminus KBU60_16070 PF13380 CoA binding domain KBU60_16070 PF00583 Acetyltransferase (GNAT) family KBU60_16070 PF13607 Succinyl-CoA ligase like flavodoxin domain KBU60_16075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_16075 PF03466 LysR substrate binding domain KBU60_16080 PF00593 TonB dependent receptor KBU60_16080 PF07715 TonB-dependent Receptor Plug Domain KBU60_16085 PF16363 GDP-mannose 4,6 dehydratase KBU60_16090 PF13426 PAS domain KBU60_16090 PF08448 PAS fold KBU60_16090 PF00563 EAL domain KBU60_16090 PF00990 Diguanylate cyclase, GGDEF domain KBU60_16090 PF05231 MASE1 KBU60_16090 PF08447 PAS fold KBU60_16095 PF03746 LamB/YcsF family KBU60_16100 PF02682 Carboxyltransferase domain, subdomain C and D KBU60_16105 PF02626 Carboxyltransferase domain, subdomain A and B KBU60_16120 PF00005 ABC transporter KBU60_16125 PF13472 GDSL-like Lipase/Acylhydrolase family KBU60_16130 PF07055 Enoyl reductase FAD binding domain KBU60_16130 PF12241 Trans-2-enoyl-CoA reductase catalytic region KBU60_16130 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase KBU60_16135 PF13188 PAS domain KBU60_16135 PF00990 Diguanylate cyclase, GGDEF domain KBU60_16135 PF00563 EAL domain KBU60_16135 PF03707 Bacterial signalling protein N terminal repeat KBU60_16145 PF01556 DnaJ C terminal domain KBU60_16145 PF00684 DnaJ central domain KBU60_16145 PF00226 DnaJ domain KBU60_16150 PF14226 non-haem dioxygenase in morphine synthesis N-terminal KBU60_16150 PF03171 2OG-Fe(II) oxygenase superfamily KBU60_16170 PF12793 Sugar transport-related sRNA regulator N-term KBU60_16170 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KBU60_16180 PF03061 Thioesterase superfamily KBU60_16195 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) KBU60_16200 PF12262 Bacterial virulence factor lipase N-terminal KBU60_16215 PF03741 Integral membrane protein TerC family KBU60_16220 PF00149 Calcineurin-like phosphoesterase KBU60_16220 PF02872 5'-nucleotidase, C-terminal domain KBU60_16225 PF11398 Protein of unknown function (DUF2813) KBU60_16230 PF06496 Protein of unknown function (DUF1097) KBU60_16235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_16235 PF03466 LysR substrate binding domain KBU60_16240 PF01226 Formate/nitrite transporter KBU60_16245 PF04264 YceI-like domain KBU60_16250 PF01292 Prokaryotic cytochrome b561 KBU60_16265 PF00563 EAL domain KBU60_16265 PF12792 CSS motif domain associated with EAL KBU60_16270 PF00270 DEAD/DEAH box helicase KBU60_16270 PF00271 Helicase conserved C-terminal domain KBU60_16275 PF04336 Acyl carrier protein phosphodiesterase KBU60_16280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KBU60_16285 PF13419 Haloacid dehalogenase-like hydrolase KBU60_16290 PF11849 Domain of unknown function (DUF3369) KBU60_16305 PF00294 pfkB family carbohydrate kinase KBU60_16310 PF01268 Formate--tetrahydrofolate ligase KBU60_16315 PF00483 Nucleotidyl transferase KBU60_16320 PF06483 Chitinase C KBU60_16320 PF00704 Glycosyl hydrolases family 18 KBU60_16325 PF12833 Helix-turn-helix domain KBU60_16325 PF06719 AraC-type transcriptional regulator N-terminus KBU60_16330 PF00465 Iron-containing alcohol dehydrogenase KBU60_16340 PF00072 Response regulator receiver domain KBU60_16340 PF14532 Sigma-54 interaction domain KBU60_16340 PF02954 Bacterial regulatory protein, Fis family KBU60_16345 PF00512 His Kinase A (phospho-acceptor) domain KBU60_16345 PF00672 HAMP domain KBU60_16345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_16355 PF07690 Major Facilitator Superfamily KBU60_16360 PF02887 Pyruvate kinase, alpha/beta domain KBU60_16360 PF00224 Pyruvate kinase, barrel domain KBU60_16365 PF00005 ABC transporter KBU60_16370 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_16375 PF00497 Bacterial extracellular solute-binding proteins, family 3 KBU60_16380 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_16385 PF00563 EAL domain KBU60_16385 PF01590 GAF domain KBU60_16385 PF00990 Diguanylate cyclase, GGDEF domain KBU60_16385 PF00989 PAS fold KBU60_16400 PF00356 Bacterial regulatory proteins, lacI family KBU60_16400 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family KBU60_16405 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KBU60_16405 PF00381 PTS HPr component phosphorylation site KBU60_16410 PF00294 pfkB family carbohydrate kinase KBU60_16415 PF02378 Phosphotransferase system, EIIC KBU60_16415 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KBU60_16425 PF00873 AcrB/AcrD/AcrF family KBU60_16435 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KBU60_16445 PF01571 Aminomethyltransferase folate-binding domain KBU60_16445 PF08669 Glycine cleavage T-protein C-terminal barrel domain KBU60_16455 PF00464 Serine hydroxymethyltransferase KBU60_16460 PF01597 Glycine cleavage H-protein KBU60_16465 PF02347 Glycine cleavage system P-protein KBU60_16515 PF00664 ABC transporter transmembrane region KBU60_16515 PF00005 ABC transporter KBU60_16535 PF02253 Phospholipase A1 KBU60_16545 PF09278 MerR, DNA binding KBU60_16545 PF00376 MerR family regulatory protein KBU60_16550 PF01327 Polypeptide deformylase KBU60_16570 PF03448 MgtE intracellular N domain KBU60_16570 PF01769 Divalent cation transporter KBU60_16570 PF00571 CBS domain KBU60_16590 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KBU60_16595 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KBU60_16605 PF01757 Acyltransferase family KBU60_16615 PF09722 Protein of unknown function (DUF2384) KBU60_16620 PF00141 Peroxidase KBU60_16625 PF01645 Conserved region in glutamate synthase KBU60_16625 PF13187 4Fe-4S dicluster domain KBU60_16635 PF00072 Response regulator receiver domain KBU60_16635 PF12431 Transcriptional regulator KBU60_16640 PF17203 Single cache domain 3 KBU60_16640 PF00989 PAS fold KBU60_16640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_16640 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain KBU60_16645 PF00939 Sodium:sulfate symporter transmembrane region KBU60_16650 PF00171 Aldehyde dehydrogenase family KBU60_16670 PF00892 EamA-like transporter family KBU60_16675 PF00893 Small Multidrug Resistance protein KBU60_16680 PF02868 Thermolysin metallopeptidase, alpha-helical domain KBU60_16680 PF07504 Fungalysin/Thermolysin Propeptide Motif KBU60_16680 PF04151 Bacterial pre-peptidase C-terminal domain KBU60_16680 PF03413 Peptidase propeptide and YPEB domain KBU60_16680 PF01447 Thermolysin metallopeptidase, catalytic domain KBU60_16690 PF01569 PAP2 superfamily KBU60_16700 PF00892 EamA-like transporter family KBU60_16715 PF01584 CheW-like domain KBU60_16715 PF00072 Response regulator receiver domain KBU60_16735 PF00196 Bacterial regulatory proteins, luxR family KBU60_16735 PF00072 Response regulator receiver domain KBU60_16745 PF00990 Diguanylate cyclase, GGDEF domain KBU60_16750 PF00196 Bacterial regulatory proteins, luxR family KBU60_16750 PF00072 Response regulator receiver domain KBU60_16755 PF00563 EAL domain KBU60_16755 PF00990 Diguanylate cyclase, GGDEF domain KBU60_16755 PF03707 Bacterial signalling protein N terminal repeat KBU60_16755 PF13188 PAS domain KBU60_16760 PF00512 His Kinase A (phospho-acceptor) domain KBU60_16760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_16760 PF09456 RcsC Alpha-Beta-Loop (ABL) KBU60_16760 PF00072 Response regulator receiver domain KBU60_16770 PF03466 LysR substrate binding domain KBU60_16770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_16775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_16775 PF03466 LysR substrate binding domain KBU60_16785 PF05736 OprF membrane domain KBU60_16785 PF00691 OmpA family KBU60_16820 PF00437 Type II/IV secretion system protein KBU60_16835 PF00263 Bacterial type II and III secretion system protein KBU60_16835 PF04972 BON domain KBU60_16835 PF13629 Pilus formation protein N terminal region KBU60_16855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_16855 PF03466 LysR substrate binding domain KBU60_16860 PF12833 Helix-turn-helix domain KBU60_16870 PF01752 Collagenase KBU60_16870 PF08453 Peptidase family M9 N-terminal KBU60_16870 PF04151 Bacterial pre-peptidase C-terminal domain KBU60_16880 PF01926 50S ribosome-binding GTPase KBU60_16885 PF00155 Aminotransferase class I and II KBU60_16890 PF00072 Response regulator receiver domain KBU60_16890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_16900 PF00583 Acetyltransferase (GNAT) family KBU60_16900 PF00814 Glycoprotease family KBU60_16910 PF03606 C4-dicarboxylate anaerobic carrier KBU60_16915 PF04011 LemA family KBU60_16920 PF01435 Peptidase family M48 KBU60_16935 PF18081 Fanconi anemia-associated nuclease SAP domain KBU60_16935 PF08774 VRR-NUC domain KBU60_16945 PF13186 Iron-sulfur cluster-binding domain KBU60_16945 PF04055 Radical SAM superfamily KBU60_16960 PF04076 Bacterial OB fold (BOF) protein KBU60_16965 PF00781 Diacylglycerol kinase catalytic domain KBU60_16970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_16970 PF03466 LysR substrate binding domain KBU60_16975 PF01872 RibD C-terminal domain KBU60_16975 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KBU60_16990 PF00092 von Willebrand factor type A domain KBU60_17010 PF13186 Iron-sulfur cluster-binding domain KBU60_17010 PF04055 Radical SAM superfamily KBU60_17015 PF00884 Sulfatase KBU60_17020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_17020 PF03466 LysR substrate binding domain KBU60_17030 PF00884 Sulfatase KBU60_17035 PF16385 Domain of unknown function KBU60_17035 PF00884 Sulfatase KBU60_17040 PF00486 Transcriptional regulatory protein, C terminal KBU60_17040 PF00072 Response regulator receiver domain KBU60_17055 PF00512 His Kinase A (phospho-acceptor) domain KBU60_17055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_17055 PF00672 HAMP domain KBU60_17055 PF01627 Hpt domain KBU60_17055 PF00072 Response regulator receiver domain KBU60_17060 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family KBU60_17065 PF02142 MGS-like domain KBU60_17070 PF00580 UvrD/REP helicase N-terminal domain KBU60_17070 PF13361 UvrD-like helicase C-terminal domain KBU60_17070 PF12462 DNA helicase IV / RNA helicase N terminal KBU60_17075 PF12805 FUSC-like inner membrane protein yccS KBU60_17105 PF07715 TonB-dependent Receptor Plug Domain KBU60_17105 PF00593 TonB dependent receptor KBU60_17110 PF12833 Helix-turn-helix domain KBU60_17115 PF13411 MerR HTH family regulatory protein KBU60_17120 PF00005 ABC transporter KBU60_17125 PF01032 FecCD transport family KBU60_17130 PF01032 FecCD transport family KBU60_17135 PF01497 Periplasmic binding protein KBU60_17155 PF04314 Copper chaperone PCu(A)C KBU60_17160 PF00012 Hsp70 protein KBU60_17175 PF00676 Dehydrogenase E1 component KBU60_17180 PF02780 Transketolase, C-terminal domain KBU60_17180 PF02779 Transketolase, pyrimidine binding domain KBU60_17185 PF00364 Biotin-requiring enzyme KBU60_17185 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KBU60_17185 PF02817 e3 binding domain KBU60_17195 PF02798 Glutathione S-transferase, N-terminal domain KBU60_17195 PF00043 Glutathione S-transferase, C-terminal domain KBU60_17200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_17200 PF03466 LysR substrate binding domain KBU60_17210 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_17215 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_17220 PF00497 Bacterial extracellular solute-binding proteins, family 3 KBU60_17225 PF00005 ABC transporter KBU60_17245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_17245 PF03466 LysR substrate binding domain KBU60_17250 PF01565 FAD binding domain KBU60_17250 PF08031 Berberine and berberine like KBU60_17255 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KBU60_17265 PF01040 UbiA prenyltransferase family KBU60_17275 PF00510 Cytochrome c oxidase subunit III KBU60_17280 PF00115 Cytochrome C and Quinol oxidase polypeptide I KBU60_17285 PF00116 Cytochrome C oxidase subunit II, periplasmic domain KBU60_17285 PF06481 COX Aromatic Rich Motif KBU60_17295 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KBU60_17295 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KBU60_17300 PF00378 Enoyl-CoA hydratase/isomerase KBU60_17305 PF00378 Enoyl-CoA hydratase/isomerase KBU60_17310 PF02770 Acyl-CoA dehydrogenase, middle domain KBU60_17310 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KBU60_17310 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KBU60_17315 PF00171 Aldehyde dehydrogenase family KBU60_17320 PF00108 Thiolase, N-terminal domain KBU60_17320 PF02803 Thiolase, C-terminal domain KBU60_17325 PF00376 MerR family regulatory protein KBU60_17325 PF09278 MerR, DNA binding KBU60_17330 PF02770 Acyl-CoA dehydrogenase, middle domain KBU60_17330 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KBU60_17330 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KBU60_17335 PF01039 Carboxyl transferase domain KBU60_17340 PF00378 Enoyl-CoA hydratase/isomerase KBU60_17345 PF00682 HMGL-like KBU60_17350 PF10063 Uncharacterized integral membrane protein (DUF2301) KBU60_17360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KBU60_17360 PF08447 PAS fold KBU60_17360 PF13426 PAS domain KBU60_17370 PF12833 Helix-turn-helix domain KBU60_17370 PF02311 AraC-like ligand binding domain KBU60_17395 PF00990 Diguanylate cyclase, GGDEF domain KBU60_17395 PF00072 Response regulator receiver domain KBU60_17445 PF00871 Acetokinase family KBU60_17450 PF00990 Diguanylate cyclase, GGDEF domain KBU60_17450 PF13426 PAS domain KBU60_17450 PF00563 EAL domain KBU60_17455 PF00270 DEAD/DEAH box helicase KBU60_17455 PF03880 DbpA RNA binding domain KBU60_17455 PF00271 Helicase conserved C-terminal domain KBU60_17460 PF08206 Ribonuclease B OB domain KBU60_17460 PF00773 RNB domain KBU60_17460 PF00575 S1 RNA binding domain KBU60_17465 PF12833 Helix-turn-helix domain KBU60_17475 PF12849 PBP superfamily domain KBU60_17480 PF01575 MaoC like domain KBU60_17490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_17490 PF03466 LysR substrate binding domain KBU60_17495 PF13186 Iron-sulfur cluster-binding domain KBU60_17495 PF04055 Radical SAM superfamily KBU60_17500 PF00884 Sulfatase KBU60_17505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_17505 PF03466 LysR substrate binding domain KBU60_17515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KBU60_17515 PF00672 HAMP domain KBU60_17515 PF12729 Four helix bundle sensory module for signal transduction KBU60_17520 PF00005 ABC transporter KBU60_17525 PF12792 CSS motif domain associated with EAL KBU60_17525 PF00563 EAL domain KBU60_17545 PF00271 Helicase conserved C-terminal domain KBU60_17545 PF00270 DEAD/DEAH box helicase KBU60_17550 PF02492 CobW/HypB/UreG, nucleotide-binding domain KBU60_17550 PF07683 Cobalamin synthesis protein cobW C-terminal domain KBU60_17560 PF01470 Pyroglutamyl peptidase KBU60_17570 PF00291 Pyridoxal-phosphate dependent enzyme KBU60_17580 PF00271 Helicase conserved C-terminal domain KBU60_17580 PF00270 DEAD/DEAH box helicase KBU60_17585 PF12843 Putative quorum-sensing-regulated virulence factor KBU60_17605 PF01329 Pterin 4 alpha carbinolamine dehydratase KBU60_17610 PF00351 Biopterin-dependent aromatic amino acid hydroxylase KBU60_17615 PF13193 AMP-binding enzyme C-terminal domain KBU60_17615 PF00501 AMP-binding enzyme KBU60_17625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_17625 PF03466 LysR substrate binding domain KBU60_17650 PF00892 EamA-like transporter family KBU60_17665 PF00465 Iron-containing alcohol dehydrogenase KBU60_17670 PF07995 Glucose / Sorbosone dehydrogenase KBU60_17680 PF00210 Ferritin-like domain KBU60_17685 PF00672 HAMP domain KBU60_17685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KBU60_17685 PF17200 Single Cache domain 2 KBU60_17695 PF12704 MacB-like periplasmic core domain KBU60_17695 PF00005 ABC transporter KBU60_17695 PF02687 FtsX-like permease family KBU60_17700 PF02687 FtsX-like permease family KBU60_17700 PF12704 MacB-like periplasmic core domain KBU60_17700 PF00005 ABC transporter KBU60_17715 PF00990 Diguanylate cyclase, GGDEF domain KBU60_17720 PF13426 PAS domain KBU60_17720 PF08447 PAS fold KBU60_17720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KBU60_17725 PF03889 Alternative ribosome-rescue factor A KBU60_17730 PF00313 'Cold-shock' DNA-binding domain KBU60_17760 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KBU60_17760 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KBU60_17765 PF01040 UbiA prenyltransferase family KBU60_17770 PF02628 Cytochrome oxidase assembly protein KBU60_17790 PF00510 Cytochrome c oxidase subunit III KBU60_17795 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 KBU60_17800 PF00115 Cytochrome C and Quinol oxidase polypeptide I KBU60_17805 PF00116 Cytochrome C oxidase subunit II, periplasmic domain KBU60_17805 PF02790 Cytochrome C oxidase subunit II, transmembrane domain KBU60_17810 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KBU60_17810 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KBU60_17810 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KBU60_17810 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KBU60_17820 PF01810 LysE type translocator KBU60_17825 PF12833 Helix-turn-helix domain KBU60_17840 PF01557 Fumarylacetoacetate (FAA) hydrolase family KBU60_17850 PF00267 Gram-negative porin KBU60_17855 PF00892 EamA-like transporter family KBU60_17860 PF00462 Glutaredoxin KBU60_17870 PF07690 Major Facilitator Superfamily KBU60_17875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_17875 PF03466 LysR substrate binding domain KBU60_17885 PF08525 Opacity-associated protein A N-terminal motif KBU60_17885 PF01551 Peptidase family M23 KBU60_17885 PF01476 LysM domain KBU60_17905 PF07670 Nucleoside recognition KBU60_17910 PF02743 Cache domain KBU60_17910 PF00672 HAMP domain KBU60_17910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KBU60_17920 PF03222 Tryptophan/tyrosine permease family KBU60_17955 PF08240 Alcohol dehydrogenase GroES-like domain KBU60_17955 PF00107 Zinc-binding dehydrogenase KBU60_17960 PF02378 Phosphotransferase system, EIIC KBU60_17960 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KBU60_17965 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KBU60_17980 PF01758 Sodium Bile acid symporter family KBU60_17990 PF01161 Phosphatidylethanolamine-binding protein KBU60_17995 PF02567 Phenazine biosynthesis-like protein KBU60_18000 PF10282 Lactonase, 7-bladed beta-propeller KBU60_18005 PF00672 HAMP domain KBU60_18005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KBU60_18015 PF00005 ABC transporter KBU60_18035 PF01568 Molydopterin dinucleotide binding domain KBU60_18035 PF00384 Molybdopterin oxidoreductase KBU60_18035 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KBU60_18035 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region KBU60_18035 PF12838 4Fe-4S dicluster domain KBU60_18055 PF00873 AcrB/AcrD/AcrF family KBU60_18075 PF00990 Diguanylate cyclase, GGDEF domain KBU60_18085 PF13302 Acetyltransferase (GNAT) domain KBU60_18095 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) KBU60_18100 PF00873 AcrB/AcrD/AcrF family KBU60_18105 PF13533 Biotin-lipoyl like KBU60_18115 PF00326 Prolyl oligopeptidase family KBU60_18115 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain KBU60_18120 PF00005 ABC transporter KBU60_18120 PF16326 ABC transporter C-terminal domain KBU60_18120 PF12848 ABC transporter KBU60_18125 PF00582 Universal stress protein family KBU60_18130 PF02525 Flavodoxin-like fold KBU60_18135 PF00999 Sodium/hydrogen exchanger family KBU60_18135 PF02254 TrkA-N domain KBU60_18150 PF00128 Alpha amylase, catalytic domain KBU60_18160 PF01752 Collagenase KBU60_18160 PF08453 Peptidase family M9 N-terminal KBU60_18160 PF04151 Bacterial pre-peptidase C-terminal domain KBU60_18180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_18180 PF03466 LysR substrate binding domain KBU60_18185 PF00210 Ferritin-like domain KBU60_18190 PF00141 Peroxidase KBU60_18210 PF00082 Subtilase family KBU60_18215 PF13091 PLD-like domain KBU60_18215 PF13087 AAA domain KBU60_18230 PF00072 Response regulator receiver domain KBU60_18230 PF01584 CheW-like domain KBU60_18240 PF01243 Pyridoxamine 5'-phosphate oxidase KBU60_18245 PF06228 Haem utilisation ChuX/HutX KBU60_18250 PF04055 Radical SAM superfamily KBU60_18255 PF03544 Gram-negative bacterial TonB protein C-terminal KBU60_18260 PF01618 MotA/TolQ/ExbB proton channel family KBU60_18265 PF02472 Biopolymer transport protein ExbD/TolR KBU60_18275 PF01032 FecCD transport family KBU60_18280 PF00005 ABC transporter KBU60_18320 PF01467 Cytidylyltransferase-like KBU60_18325 PF02540 NAD synthase KBU60_18330 PF00111 2Fe-2S iron-sulfur cluster binding domain KBU60_18330 PF03473 MOSC domain KBU60_18330 PF03476 MOSC N-terminal beta barrel domain KBU60_18330 PF00111 2Fe-2S iron-sulfur cluster binding domain KBU60_18330 PF03473 MOSC domain KBU60_18330 PF03476 MOSC N-terminal beta barrel domain KBU60_18335 PF01679 Proteolipid membrane potential modulator KBU60_18340 PF01979 Amidohydrolase family KBU60_18345 PF05661 Protein of unknown function (DUF808) KBU60_18375 PF01497 Periplasmic binding protein KBU60_18375 PF12833 Helix-turn-helix domain KBU60_18380 PF00155 Aminotransferase class I and II KBU60_18405 PF00535 Glycosyl transferase family 2 KBU60_18420 PF00270 DEAD/DEAH box helicase KBU60_18420 PF00271 Helicase conserved C-terminal domain KBU60_18430 PF03466 LysR substrate binding domain KBU60_18430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_18435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_18435 PF03466 LysR substrate binding domain KBU60_18445 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KBU60_18450 PF08240 Alcohol dehydrogenase GroES-like domain KBU60_18450 PF00107 Zinc-binding dehydrogenase KBU60_18470 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) KBU60_18485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_18485 PF03466 LysR substrate binding domain KBU60_18490 PF00709 Adenylosuccinate synthetase KBU60_18495 PF00710 Asparaginase, N-terminal KBU60_18495 PF17763 Glutaminase/Asparaginase C-terminal domain KBU60_18500 PF03618 Kinase/pyrophosphorylase KBU60_18505 PF00391 PEP-utilising enzyme, mobile domain KBU60_18505 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain KBU60_18505 PF02896 PEP-utilising enzyme, TIM barrel domain KBU60_18520 PF00579 tRNA synthetases class I (W and Y) KBU60_18525 PF13416 Bacterial extracellular solute-binding protein KBU60_18535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_18535 PF03466 LysR substrate binding domain KBU60_18540 PF13533 Biotin-lipoyl like KBU60_18545 PF00873 AcrB/AcrD/AcrF family KBU60_18560 PF07694 5TMR of 5TMR-LYT KBU60_18560 PF00990 Diguanylate cyclase, GGDEF domain KBU60_18570 PF00196 Bacterial regulatory proteins, luxR family KBU60_18575 PF02837 Glycosyl hydrolases family 2, sugar binding domain KBU60_18575 PF00703 Glycosyl hydrolases family 2 KBU60_18575 PF02836 Glycosyl hydrolases family 2, TIM barrel domain KBU60_18575 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 KBU60_18580 PF02028 BCCT, betaine/carnitine/choline family transporter KBU60_18585 PF00392 Bacterial regulatory proteins, gntR family KBU60_18585 PF07702 UTRA domain KBU60_18610 PF00005 ABC transporter KBU60_18610 PF08402 TOBE domain KBU60_18635 PF00873 AcrB/AcrD/AcrF family KBU60_18640 PF13533 Biotin-lipoyl like KBU60_18645 PF13091 PLD-like domain KBU60_18670 PF09278 MerR, DNA binding KBU60_18670 PF00376 MerR family regulatory protein KBU60_18680 PF03466 LysR substrate binding domain KBU60_18680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_18690 PF13378 Enolase C-terminal domain-like KBU60_18690 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain KBU60_18695 PF14492 Elongation Factor G, domain II KBU60_18695 PF00009 Elongation factor Tu GTP binding domain KBU60_18695 PF03144 Elongation factor Tu domain 2 KBU60_18695 PF00679 Elongation factor G C-terminus KBU60_18695 PF03764 Elongation factor G, domain IV KBU60_18720 PF02001 Protein of unknown function DUF134 KBU60_18725 PF17185 NlpE C-terminal OB domain KBU60_18725 PF04170 NlpE N-terminal domain KBU60_18730 PF06629 MltA-interacting protein MipA KBU60_18740 PF01389 OmpA-like transmembrane domain KBU60_18740 PF00691 OmpA family KBU60_18745 PF03466 LysR substrate binding domain KBU60_18745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_18770 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family KBU60_18770 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain KBU60_18780 PF00857 Isochorismatase family KBU60_18790 PF00199 Catalase KBU60_18790 PF06628 Catalase-related immune-responsive KBU60_18800 PF00455 DeoR C terminal sensor domain KBU60_18800 PF08220 DeoR-like helix-turn-helix domain KBU60_18805 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KBU60_18810 PF01641 SelR domain KBU60_18810 PF01625 Peptide methionine sulfoxide reductase KBU60_18820 PF03466 LysR substrate binding domain KBU60_18820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_18835 PF03060 Nitronate monooxygenase KBU60_18840 PF00149 Calcineurin-like phosphoesterase KBU60_18840 PF02872 5'-nucleotidase, C-terminal domain KBU60_18850 PF00440 Bacterial regulatory proteins, tetR family KBU60_18850 PF08359 YsiA-like protein, C-terminal region KBU60_18865 PF03466 LysR substrate binding domain KBU60_18865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_18870 PF01810 LysE type translocator KBU60_18885 PF00118 TCP-1/cpn60 chaperonin family KBU60_18890 PF00166 Chaperonin 10 Kd subunit KBU60_18895 PF00581 Rhodanese-like domain KBU60_18920 PF01070 FMN-dependent dehydrogenase KBU60_18940 PF00669 Bacterial flagellin N-terminal helical region KBU60_18945 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KBU60_18945 PF00460 Flagella basal body rod protein KBU60_18950 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase KBU60_18950 PF10135 Rod binding protein KBU60_18955 PF02119 Flagellar P-ring protein KBU60_18960 PF02107 Flagellar L-ring protein KBU60_18965 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KBU60_18965 PF00460 Flagella basal body rod protein KBU60_18970 PF00460 Flagella basal body rod protein KBU60_18970 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KBU60_18975 PF07559 Flagellar basal body protein FlaE KBU60_18975 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KBU60_18975 PF00460 Flagella basal body rod protein KBU60_18980 PF13861 FlgD Tudor-like domain KBU60_18980 PF03963 Flagellar hook capping protein - N-terminal region KBU60_18980 PF13860 FlgD Ig-like domain KBU60_18985 PF00460 Flagella basal body rod protein KBU60_18985 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KBU60_18990 PF00460 Flagella basal body rod protein KBU60_19010 PF01464 Transglycosylase SLT domain KBU60_19015 PF08264 Anticodon-binding domain of tRNA KBU60_19015 PF00133 tRNA synthetases class I (I, L, M and V) KBU60_19035 PF03313 Serine dehydratase alpha chain KBU60_19035 PF03315 Serine dehydratase beta chain KBU60_19040 PF00854 POT family KBU60_19050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_19050 PF03466 LysR substrate binding domain KBU60_19060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_19060 PF03466 LysR substrate binding domain KBU60_19065 PF00691 OmpA family KBU60_19065 PF01389 OmpA-like transmembrane domain KBU60_19070 PF18027 Cytosolic carboxypeptidase N-terminal domain KBU60_19070 PF00246 Zinc carboxypeptidase KBU60_19075 PF01266 FAD dependent oxidoreductase KBU60_19080 PF04393 Protein of unknown function (DUF535) KBU60_19095 PF00392 Bacterial regulatory proteins, gntR family KBU60_19095 PF07702 UTRA domain KBU60_19100 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_19105 PF00005 ABC transporter KBU60_19120 PF00266 Aminotransferase class-V KBU60_19125 PF00202 Aminotransferase class-III KBU60_19130 PF13419 Haloacid dehalogenase-like hydrolase KBU60_19135 PF00356 Bacterial regulatory proteins, lacI family KBU60_19140 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KBU60_19150 PF03611 PTS system sugar-specific permease component KBU60_19160 PF05922 Peptidase inhibitor I9 KBU60_19160 PF00082 Subtilase family KBU60_19165 PF00657 GDSL-like Lipase/Acylhydrolase KBU60_19170 PF02321 Outer membrane efflux protein KBU60_19175 PF02687 FtsX-like permease family KBU60_19175 PF00005 ABC transporter KBU60_19175 PF12704 MacB-like periplasmic core domain KBU60_19180 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KBU60_19185 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) KBU60_19190 PF00194 Eukaryotic-type carbonic anhydrase KBU60_19195 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) KBU60_19210 PF13419 Haloacid dehalogenase-like hydrolase KBU60_19215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_19215 PF03466 LysR substrate binding domain KBU60_19250 PF12464 Maltose acetyltransferase KBU60_19250 PF14602 Hexapeptide repeat of succinyl-transferase KBU60_19255 PF02566 OsmC-like protein KBU60_19260 PF01625 Peptide methionine sulfoxide reductase KBU60_19260 PF01641 SelR domain KBU60_19270 PF00919 Uncharacterized protein family UPF0004 KBU60_19270 PF04055 Radical SAM superfamily KBU60_19275 PF04244 Deoxyribodipyrimidine photo-lyase-related protein KBU60_19280 PF03441 FAD binding domain of DNA photolyase KBU60_19280 PF00875 DNA photolyase KBU60_19285 PF00990 Diguanylate cyclase, GGDEF domain KBU60_19300 PF00672 HAMP domain KBU60_19300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KBU60_19300 PF12729 Four helix bundle sensory module for signal transduction KBU60_19305 PF05230 MASE2 domain KBU60_19305 PF00990 Diguanylate cyclase, GGDEF domain KBU60_19310 PF13532 2OG-Fe(II) oxygenase superfamily KBU60_19320 PF07670 Nucleoside recognition KBU60_19320 PF01773 Na+ dependent nucleoside transporter N-terminus KBU60_19320 PF07662 Na+ dependent nucleoside transporter C-terminus KBU60_19335 PF01212 Beta-eliminating lyase KBU60_19345 PF01266 FAD dependent oxidoreductase KBU60_19360 PF05525 Branched-chain amino acid transport protein KBU60_19365 PF08448 PAS fold KBU60_19365 PF00990 Diguanylate cyclase, GGDEF domain KBU60_19370 PF02954 Bacterial regulatory protein, Fis family KBU60_19370 PF00158 Sigma-54 interaction domain KBU60_19370 PF00072 Response regulator receiver domain KBU60_19375 PF02743 Cache domain KBU60_19375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_19375 PF00512 His Kinase A (phospho-acceptor) domain KBU60_19380 PF00232 Glycosyl hydrolase family 1 KBU60_19405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_19405 PF03466 LysR substrate binding domain KBU60_19410 PF18030 RimK PreATP-grasp domain KBU60_19410 PF08443 RimK-like ATP-grasp domain KBU60_19415 PF18030 RimK PreATP-grasp domain KBU60_19415 PF08443 RimK-like ATP-grasp domain KBU60_19420 PF00753 Metallo-beta-lactamase superfamily KBU60_19425 PF17944 Arginine decarboxylase C-terminal helical extension KBU60_19425 PF17810 Arginine decarboxylase helical bundle domain KBU60_19425 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain KBU60_19430 PF00491 Arginase family KBU60_19435 PF07690 Major Facilitator Superfamily KBU60_19440 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain KBU60_19440 PF00326 Prolyl oligopeptidase family KBU60_19455 PF00950 ABC 3 transport family KBU60_19460 PF00005 ABC transporter KBU60_19465 PF01297 Zinc-uptake complex component A periplasmic KBU60_19505 PF02472 Biopolymer transport protein ExbD/TolR KBU60_19510 PF01618 MotA/TolQ/ExbB proton channel family KBU60_19515 PF01618 MotA/TolQ/ExbB proton channel family KBU60_19525 PF07715 TonB-dependent Receptor Plug Domain KBU60_19525 PF00593 TonB dependent receptor KBU60_19530 PF00672 HAMP domain KBU60_19530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_19530 PF00512 His Kinase A (phospho-acceptor) domain KBU60_19530 PF16750 Sensor domain of 2-component histidine kinase KBU60_19535 PF00072 Response regulator receiver domain KBU60_19535 PF00486 Transcriptional regulatory protein, C terminal KBU60_19540 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KBU60_19540 PF00056 lactate/malate dehydrogenase, NAD binding domain KBU60_19545 PF03009 Glycerophosphoryl diester phosphodiesterase family KBU60_19555 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KBU60_19555 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KBU60_19560 PF10928 Protein of unknown function (DUF2810) KBU60_19595 PF00589 Phage integrase family KBU60_19595 PF02899 Phage integrase, N-terminal SAM-like domain KBU60_19655 PF04013 Putative SAM-dependent RNA methyltransferase KBU60_19660 PF01523 Putative modulator of DNA gyrase KBU60_19665 PF01523 Putative modulator of DNA gyrase KBU60_19670 PF08543 Phosphomethylpyrimidine kinase KBU60_19675 PF00005 ABC transporter KBU60_19680 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_19685 PF09084 NMT1/THI5 like KBU60_19690 PF03070 TENA/THI-4/PQQC family KBU60_19695 PF02110 Hydroxyethylthiazole kinase family KBU60_19700 PF02581 Thiamine monophosphate synthase KBU60_19710 PF00384 Molybdopterin oxidoreductase KBU60_19710 PF01568 Molydopterin dinucleotide binding domain KBU60_19710 PF18364 Molybdopterin oxidoreductase N-terminal domain KBU60_19715 PF03264 NapC/NirT cytochrome c family, N-terminal region KBU60_19740 PF00583 Acetyltransferase (GNAT) family KBU60_19760 PF00392 Bacterial regulatory proteins, gntR family KBU60_19760 PF00155 Aminotransferase class I and II KBU60_19765 PF02595 Glycerate kinase family KBU60_19770 PF02447 GntP family permease KBU60_19775 PF13556 PucR C-terminal helix-turn-helix domain KBU60_19775 PF17853 GGDEF-like domain KBU60_19775 PF05651 Putative sugar diacid recognition KBU60_19800 PF13419 Haloacid dehalogenase-like hydrolase KBU60_19815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_19815 PF03466 LysR substrate binding domain KBU60_19825 PF03466 LysR substrate binding domain KBU60_19825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_19830 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KBU60_19835 PF01661 Macro domain KBU60_19840 PF01204 Trehalase KBU60_19850 PF12706 Beta-lactamase superfamily domain KBU60_19860 PF07690 Major Facilitator Superfamily KBU60_19865 PF13533 Biotin-lipoyl like KBU60_19870 PF03922 OmpW family KBU60_19875 PF13599 Pentapeptide repeats (9 copies) KBU60_19890 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading KBU60_19890 PF18416 N-acetylglucosamine binding protein domain 2 KBU60_19895 PF01037 Lrp/AsnC ligand binding domain KBU60_19900 PF01810 LysE type translocator KBU60_19905 PF04954 Siderophore-interacting protein KBU60_19905 PF08021 Siderophore-interacting FAD-binding domain KBU60_19910 PF14583 Oligogalacturonate lyase KBU60_19915 PF00474 Sodium:solute symporter family KBU60_19920 PF13229 Right handed beta helix region KBU60_19935 PF01081 KDPG and KHG aldolase KBU60_19940 PF00294 pfkB family carbohydrate kinase KBU60_19955 PF07883 Cupin domain KBU60_19960 PF10688 Bacterial inner membrane protein KBU60_19970 PF09339 IclR helix-turn-helix domain KBU60_19970 PF01614 Bacterial transcriptional regulator KBU60_19985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_19985 PF03466 LysR substrate binding domain KBU60_19990 PF00797 N-acetyltransferase KBU60_19995 PF08240 Alcohol dehydrogenase GroES-like domain KBU60_19995 PF00107 Zinc-binding dehydrogenase KBU60_20000 PF00756 Putative esterase KBU60_20010 PF17152 Periplasmic sensor domain KBU60_20010 PF00990 Diguanylate cyclase, GGDEF domain KBU60_20025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_20025 PF03466 LysR substrate binding domain KBU60_20040 PF00849 RNA pseudouridylate synthase KBU60_20045 PF01554 MatE KBU60_20050 PF03707 Bacterial signalling protein N terminal repeat KBU60_20050 PF00990 Diguanylate cyclase, GGDEF domain KBU60_20050 PF00563 EAL domain KBU60_20060 PF06865 Pyrimidine/purine nucleoside phosphorylase KBU60_20070 PF08329 Chitinase A, N-terminal domain KBU60_20070 PF00704 Glycosyl hydrolases family 18 KBU60_20090 PF03600 Citrate transporter KBU60_20100 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KBU60_20110 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KBU60_20110 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KBU60_20115 PF00730 HhH-GPD superfamily base excision DNA repair protein KBU60_20115 PF06029 AlkA N-terminal domain KBU60_20125 PF07681 DoxX KBU60_20130 PF17954 Quercetinase C-terminal cupin domain KBU60_20130 PF02678 Pirin KBU60_20135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_20135 PF03466 LysR substrate binding domain KBU60_20150 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase KBU60_20160 PF03616 Sodium/glutamate symporter KBU60_20165 PF00392 Bacterial regulatory proteins, gntR family KBU60_20165 PF00155 Aminotransferase class I and II KBU60_20170 PF00005 ABC transporter KBU60_20180 PF03616 Sodium/glutamate symporter KBU60_20185 PF00132 Bacterial transferase hexapeptide (six repeats) KBU60_20200 PF00672 HAMP domain KBU60_20200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KBU60_20200 PF17200 Single Cache domain 2 KBU60_20205 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KBU60_20215 PF00072 Response regulator receiver domain KBU60_20215 PF04397 LytTr DNA-binding domain KBU60_20220 PF07694 5TMR of 5TMR-LYT KBU60_20220 PF13492 GAF domain KBU60_20220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_20220 PF06580 Histidine kinase KBU60_20240 PF00005 ABC transporter KBU60_20250 PF01098 Cell cycle protein KBU60_20255 PF01709 Transcriptional regulator KBU60_20265 PF00672 HAMP domain KBU60_20265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_20265 PF00512 His Kinase A (phospho-acceptor) domain KBU60_20265 PF01627 Hpt domain KBU60_20265 PF17149 Periplasmic sensor domain found in signal transduction proteins KBU60_20265 PF00072 Response regulator receiver domain KBU60_20275 PF00925 GTP cyclohydrolase II KBU60_20275 PF08719 Domain of unknown function (DUF1768) KBU60_20285 PF00005 ABC transporter KBU60_20285 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KBU60_20290 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KBU60_20290 PF00005 ABC transporter KBU60_20305 PF13614 AAA domain KBU60_20305 PF18607 ParA helix turn helix domain KBU60_20310 PF08775 ParB family KBU60_20310 PF02195 ParB-like nuclease domain KBU60_20315 PF13718 GNAT acetyltransferase 2 KBU60_20315 PF05127 Helicase KBU60_20325 PF00132 Bacterial transferase hexapeptide (six repeats) KBU60_20330 PF03466 LysR substrate binding domain KBU60_20330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_20335 PF03575 Peptidase family S51 KBU60_20340 PF00267 Gram-negative porin KBU60_20345 PF00367 phosphotransferase system, EIIB KBU60_20345 PF02378 Phosphotransferase system, EIIC KBU60_20350 PF01380 SIS domain KBU60_20355 PF01418 Helix-turn-helix domain, rpiR family KBU60_20355 PF01380 SIS domain KBU60_20360 PF00246 Zinc carboxypeptidase KBU60_20365 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KBU60_20370 PF03358 NADPH-dependent FMN reductase KBU60_20380 PF03412 Peptidase C39 family KBU60_20380 PF00005 ABC transporter KBU60_20380 PF00664 ABC transporter transmembrane region KBU60_20395 PF00529 HlyD membrane-fusion protein of T1SS KBU60_20400 PF00072 Response regulator receiver domain KBU60_20400 PF02954 Bacterial regulatory protein, Fis family KBU60_20400 PF00158 Sigma-54 interaction domain KBU60_20405 PF00512 His Kinase A (phospho-acceptor) domain KBU60_20405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_20405 PF02743 Cache domain KBU60_20410 PF01243 Pyridoxamine 5'-phosphate oxidase KBU60_20410 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region KBU60_20420 PF12833 Helix-turn-helix domain KBU60_20425 PF00171 Aldehyde dehydrogenase family KBU60_20425 PF01619 Proline dehydrogenase KBU60_20425 PF14850 DNA-binding domain of Proline dehydrogenase KBU60_20425 PF18327 Proline utilization A proline dehydrogenase N-terminal domain KBU60_20435 PF00474 Sodium:solute symporter family KBU60_20470 PF01037 Lrp/AsnC ligand binding domain KBU60_20480 PF00664 ABC transporter transmembrane region KBU60_20480 PF00005 ABC transporter KBU60_20490 PF12833 Helix-turn-helix domain KBU60_20490 PF06719 AraC-type transcriptional regulator N-terminus KBU60_20505 PF10688 Bacterial inner membrane protein KBU60_20510 PF01081 KDPG and KHG aldolase KBU60_20515 PF00294 pfkB family carbohydrate kinase KBU60_20520 PF02614 Glucuronate isomerase KBU60_20525 PF08125 Mannitol dehydrogenase C-terminal domain KBU60_20525 PF01232 Mannitol dehydrogenase Rossmann domain KBU60_20530 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component KBU60_20535 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component KBU60_20540 PF03480 Bacterial extracellular solute-binding protein, family 7 KBU60_20545 PF07729 FCD domain KBU60_20545 PF00392 Bacterial regulatory proteins, gntR family KBU60_20550 PF03786 D-mannonate dehydratase (UxuA) KBU60_20555 PF00270 DEAD/DEAH box helicase KBU60_20555 PF00271 Helicase conserved C-terminal domain KBU60_20560 PF03473 MOSC domain KBU60_20560 PF03475 3-alpha domain KBU60_20575 PF11975 Family 4 glycosyl hydrolase C-terminal domain KBU60_20575 PF02056 Family 4 glycosyl hydrolase KBU60_20580 PF03466 LysR substrate binding domain KBU60_20580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_20585 PF00672 HAMP domain KBU60_20585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KBU60_20585 PF02743 Cache domain KBU60_20595 PF04542 Sigma-70 region 2 KBU60_20595 PF08281 Sigma-70, region 4 KBU60_20600 PF01965 DJ-1/PfpI family KBU60_20600 PF12833 Helix-turn-helix domain KBU60_20605 PF03466 LysR substrate binding domain KBU60_20605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_20620 PF13192 Thioredoxin domain KBU60_20620 PF07992 Pyridine nucleotide-disulphide oxidoreductase KBU60_20625 PF10417 C-terminal domain of 1-Cys peroxiredoxin KBU60_20625 PF00578 AhpC/TSA family KBU60_20630 PF01047 MarR family KBU60_20635 PF02566 OsmC-like protein KBU60_20650 PF02311 AraC-like ligand binding domain KBU60_20650 PF12833 Helix-turn-helix domain KBU60_20660 PF11762 L-arabinose isomerase C-terminal domain KBU60_20660 PF02610 L-arabinose isomerase KBU60_20665 PF00596 Class II Aldolase and Adducin N-terminal domain KBU60_20670 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KBU60_20670 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KBU60_20675 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family KBU60_20680 PF00005 ABC transporter KBU60_20685 PF02653 Branched-chain amino acid transport system / permease component KBU60_20690 PF01136 Peptidase family U32 KBU60_20700 PF00367 phosphotransferase system, EIIB KBU60_20700 PF02378 Phosphotransferase system, EIIC KBU60_20705 PF00072 Response regulator receiver domain KBU60_20705 PF00486 Transcriptional regulatory protein, C terminal KBU60_20710 PF00512 His Kinase A (phospho-acceptor) domain KBU60_20710 PF08521 Two-component sensor kinase N-terminal KBU60_20710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_20715 PF01547 Bacterial extracellular solute-binding protein KBU60_20720 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain KBU60_20720 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain KBU60_20725 PF06276 Ferric iron reductase FhuF-like transporter KBU60_20725 PF04183 IucA / IucC family KBU60_20730 PF07690 Major Facilitator Superfamily KBU60_20735 PF06276 Ferric iron reductase FhuF-like transporter KBU60_20735 PF04183 IucA / IucC family KBU60_20745 PF07715 TonB-dependent Receptor Plug Domain KBU60_20745 PF00593 TonB dependent receptor KBU60_20750 PF00593 TonB dependent receptor KBU60_20750 PF07660 Secretin and TonB N terminus short domain KBU60_20750 PF07715 TonB-dependent Receptor Plug Domain KBU60_20755 PF01497 Periplasmic binding protein KBU60_20760 PF01032 FecCD transport family KBU60_20765 PF01032 FecCD transport family KBU60_20770 PF00005 ABC transporter KBU60_20775 PF17200 Single Cache domain 2 KBU60_20775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KBU60_20775 PF00672 HAMP domain KBU60_20780 PF05193 Peptidase M16 inactive domain KBU60_20780 PF00675 Insulinase (Peptidase family M16) KBU60_20790 PF04225 Opacity-associated protein A LysM-like domain KBU60_20790 PF01551 Peptidase family M23 KBU60_20800 PF07690 Major Facilitator Superfamily KBU60_20810 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KBU60_20810 PF00128 Alpha amylase, catalytic domain KBU60_20815 PF02264 LamB porin KBU60_20830 PF16657 Maltogenic Amylase, C-terminal domain KBU60_20830 PF02903 Alpha amylase, N-terminal ig-like domain KBU60_20830 PF00128 Alpha amylase, catalytic domain KBU60_20835 PF04231 Endonuclease I KBU60_20840 PF17967 Pullulanase N2 domain KBU60_20840 PF03714 Bacterial pullanase-associated domain KBU60_20840 PF11852 Domain of unknown function (DUF3372) KBU60_20840 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KBU60_20840 PF18494 Pullulanase Ins domain KBU60_20855 PF01276 Orn/Lys/Arg decarboxylase, major domain KBU60_20855 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain KBU60_20855 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain KBU60_20860 PF13520 Amino acid permease KBU60_20870 PF08543 Phosphomethylpyrimidine kinase KBU60_20880 PF00375 Sodium:dicarboxylate symporter family KBU60_20885 PF03193 RsgA GTPase KBU60_20890 PF00367 phosphotransferase system, EIIB KBU60_20890 PF02378 Phosphotransferase system, EIIC KBU60_20900 PF02630 SCO1/SenC KBU60_20915 PF00196 Bacterial regulatory proteins, luxR family KBU60_20915 PF17874 MalT-like TPR region KBU60_20920 PF00343 Carbohydrate phosphorylase KBU60_20925 PF02446 4-alpha-glucanotransferase KBU60_20930 PF02806 Alpha amylase, C-terminal all-beta domain KBU60_20930 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KBU60_20930 PF00128 Alpha amylase, catalytic domain KBU60_20935 PF00912 Transglycosylase KBU60_20940 PF00128 Alpha amylase, catalytic domain KBU60_20955 PF07670 Nucleoside recognition KBU60_20960 PF07670 Nucleoside recognition KBU60_20965 PF01546 Peptidase family M20/M25/M40 KBU60_20965 PF07687 Peptidase dimerisation domain KBU60_20970 PF06803 Protein of unknown function (DUF1232) KBU60_20975 PF00375 Sodium:dicarboxylate symporter family KBU60_20985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_20985 PF03466 LysR substrate binding domain KBU60_20990 PF08803 Putative mono-oxygenase ydhR KBU60_21000 PF13614 AAA domain KBU60_21000 PF13807 G-rich domain on putative tyrosine kinase KBU60_21000 PF02706 Chain length determinant protein KBU60_21005 PF01451 Low molecular weight phosphotyrosine protein phosphatase KBU60_21010 PF10531 SLBB domain KBU60_21010 PF02563 Polysaccharide biosynthesis/export protein KBU60_21010 PF18412 Outer-membrane lipoprotein Wza C-terminal domain KBU60_21015 PF00881 Nitroreductase family KBU60_21020 PF01914 MarC family integral membrane protein KBU60_21025 PF01734 Patatin-like phospholipase KBU60_21030 PF18416 N-acetylglucosamine binding protein domain 2 KBU60_21030 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading KBU60_21035 PF00581 Rhodanese-like domain KBU60_21035 PF17773 UPF0176 acylphosphatase like domain KBU60_21045 PF00561 alpha/beta hydrolase fold KBU60_21050 PF07943 Penicillin-binding protein 5, C-terminal domain KBU60_21050 PF00768 D-alanyl-D-alanine carboxypeptidase KBU60_21055 PF00686 Starch binding domain KBU60_21055 PF00128 Alpha amylase, catalytic domain KBU60_21060 PF12833 Helix-turn-helix domain KBU60_21060 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term KBU60_21065 PF00881 Nitroreductase family KBU60_21075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_21075 PF03466 LysR substrate binding domain KBU60_21080 PF09905 DNA-binding protein VF530 KBU60_21090 PF00970 Oxidoreductase FAD-binding domain KBU60_21090 PF00175 Oxidoreductase NAD-binding domain KBU60_21100 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) KBU60_21105 PF01594 AI-2E family transporter KBU60_21115 PF13533 Biotin-lipoyl like KBU60_21135 PF00892 EamA-like transporter family KBU60_21140 PF03466 LysR substrate binding domain KBU60_21140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_21145 PF07690 Major Facilitator Superfamily KBU60_21155 PF00583 Acetyltransferase (GNAT) family KBU60_21165 PF00923 Transaldolase/Fructose-6-phosphate aldolase KBU60_21170 PF04055 Radical SAM superfamily KBU60_21175 PF02901 Pyruvate formate lyase-like KBU60_21175 PF01228 Glycine radical KBU60_21195 PF08000 Bacterial PH domain KBU60_21205 PF00691 OmpA family KBU60_21205 PF13677 Membrane MotB of proton-channel complex MotA/MotB KBU60_21210 PF01618 MotA/TolQ/ExbB proton channel family KBU60_21215 PF04545 Sigma-70, region 4 KBU60_21215 PF04542 Sigma-70 region 2 KBU60_21220 PF03748 Flagellar basal body-associated protein FliL KBU60_21235 PF02561 Flagellar protein FliS KBU60_21240 PF07196 Flagellin hook IN motif KBU60_21240 PF07195 Flagellar hook-associated protein 2 C-terminus KBU60_21240 PF02465 Flagellar hook-associated protein 2 N-terminus KBU60_21250 PF00669 Bacterial flagellin N-terminal helical region KBU60_21250 PF00700 Bacterial flagellin C-terminal helical region KBU60_21260 PF00771 FHIPEP family KBU60_21265 PF01312 FlhB HrpN YscU SpaS Family KBU60_21270 PF01311 Bacterial export proteins, family 1 KBU60_21275 PF01313 Bacterial export proteins, family 3 KBU60_21280 PF00813 FliP family KBU60_21285 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term KBU60_21300 PF00072 Response regulator receiver domain KBU60_21300 PF00158 Sigma-54 interaction domain KBU60_21300 PF02954 Bacterial regulatory protein, Fis family KBU60_21305 PF02049 Flagellar hook-basal body complex protein FliE KBU60_21310 PF01514 Secretory protein of YscJ/FliF family KBU60_21310 PF08345 Flagellar M-ring protein C-terminal KBU60_21315 PF01706 FliG C-terminal domain KBU60_21315 PF14841 FliG middle domain KBU60_21315 PF14842 FliG N-terminal domain KBU60_21325 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KBU60_21325 PF18269 T3SS EscN ATPase C-terminal domain KBU60_21340 PF03466 LysR substrate binding domain KBU60_21340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_21375 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KBU60_21380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_21380 PF03466 LysR substrate binding domain KBU60_21400 PF00072 Response regulator receiver domain KBU60_21400 PF00486 Transcriptional regulatory protein, C terminal KBU60_21405 PF00072 Response regulator receiver domain KBU60_21405 PF13426 PAS domain KBU60_21405 PF08448 PAS fold KBU60_21405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_21405 PF00512 His Kinase A (phospho-acceptor) domain KBU60_21410 PF00080 Copper/zinc superoxide dismutase (SODC) KBU60_21415 PF00266 Aminotransferase class-V KBU60_21420 PF00497 Bacterial extracellular solute-binding proteins, family 3 KBU60_21425 PF00563 EAL domain KBU60_21425 PF00990 Diguanylate cyclase, GGDEF domain KBU60_21425 PF03707 Bacterial signalling protein N terminal repeat KBU60_21430 PF00155 Aminotransferase class I and II KBU60_21435 PF08240 Alcohol dehydrogenase GroES-like domain KBU60_21435 PF00107 Zinc-binding dehydrogenase KBU60_21465 PF00194 Eukaryotic-type carbonic anhydrase KBU60_21470 PF00924 Mechanosensitive ion channel KBU60_21480 PF01070 FMN-dependent dehydrogenase KBU60_21485 PF02652 L-lactate permease KBU60_21490 PF03466 LysR substrate binding domain KBU60_21490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_21495 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain KBU60_21495 PF00326 Prolyl oligopeptidase family KBU60_21500 PF00005 ABC transporter KBU60_21500 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KBU60_21510 PF05362 Lon protease (S16) C-terminal proteolytic domain KBU60_21510 PF13654 AAA domain KBU60_21515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KBU60_21515 PF00672 HAMP domain KBU60_21520 PF07238 PilZ domain KBU60_21520 PF12945 Flagellar protein YcgR KBU60_21535 PF00583 Acetyltransferase (GNAT) family KBU60_21540 PF12800 4Fe-4S binding domain KBU60_21540 PF12838 4Fe-4S dicluster domain KBU60_21545 PF13237 4Fe-4S dicluster domain KBU60_21545 PF12801 4Fe-4S binding domain KBU60_21560 PF12558 ATP-binding cassette cobalt transporter KBU60_21560 PF00005 ABC transporter KBU60_21565 PF07155 ECF-type riboflavin transporter, S component KBU60_21570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KBU60_21570 PF00529 HlyD membrane-fusion protein of T1SS KBU60_21575 PF11742 Protein of unknown function (DUF3302) KBU60_21580 PF00990 Diguanylate cyclase, GGDEF domain KBU60_21595 PF01048 Phosphorylase superfamily KBU60_21600 PF08349 Protein of unknown function (DUF1722) KBU60_21605 PF13411 MerR HTH family regulatory protein KBU60_21610 PF00875 DNA photolyase KBU60_21610 PF03441 FAD binding domain of DNA photolyase KBU60_21615 PF03734 L,D-transpeptidase catalytic domain KBU60_21615 PF17969 L,D-transpeptidase C-terminal domain KBU60_21615 PF01476 LysM domain KBU60_21625 PF00271 Helicase conserved C-terminal domain KBU60_21625 PF00270 DEAD/DEAH box helicase KBU60_21630 PF00326 Prolyl oligopeptidase family KBU60_21630 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain KBU60_21635 PF07715 TonB-dependent Receptor Plug Domain KBU60_21635 PF00593 TonB dependent receptor KBU60_21655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KBU60_21655 PF00672 HAMP domain KBU60_21660 PF12849 PBP superfamily domain KBU60_21665 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_21670 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_21675 PF00005 ABC transporter KBU60_21685 PF02796 Helix-turn-helix domain of resolvase KBU60_21685 PF00239 Resolvase, N terminal domain KBU60_21695 PF01381 Helix-turn-helix KBU60_21700 PF17158 Membrane-associated sensor, integral membrane domain KBU60_21700 PF00990 Diguanylate cyclase, GGDEF domain KBU60_21705 PF03707 Bacterial signalling protein N terminal repeat KBU60_21705 PF00990 Diguanylate cyclase, GGDEF domain KBU60_21705 PF00563 EAL domain KBU60_21710 PF00196 Bacterial regulatory proteins, luxR family KBU60_21710 PF00072 Response regulator receiver domain KBU60_21715 PF08446 PAS fold KBU60_21715 PF01590 GAF domain KBU60_21715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_21715 PF00512 His Kinase A (phospho-acceptor) domain KBU60_21715 PF00360 Phytochrome region KBU60_21725 PF13700 Domain of unknown function (DUF4158) KBU60_21725 PF01526 Tn3 transposase DDE domain KBU60_21740 PF13519 von Willebrand factor type A domain KBU60_21740 PF07584 Aerotolerance regulator N-terminal KBU60_21745 PF13519 von Willebrand factor type A domain KBU60_21755 PF01882 Protein of unknown function DUF58 KBU60_21760 PF17863 AAA lid domain KBU60_21760 PF07726 ATPase family associated with various cellular activities (AAA) KBU60_21765 PF02743 Cache domain KBU60_21765 PF00672 HAMP domain KBU60_21765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KBU60_21775 PF00196 Bacterial regulatory proteins, luxR family KBU60_21780 PF00196 Bacterial regulatory proteins, luxR family KBU60_21790 PF00664 ABC transporter transmembrane region KBU60_21790 PF00005 ABC transporter KBU60_21795 PF00529 HlyD membrane-fusion protein of T1SS KBU60_21810 PF00691 OmpA family KBU60_21820 PF01032 FecCD transport family KBU60_21825 PF01497 Periplasmic binding protein KBU60_21830 PF00005 ABC transporter KBU60_21835 PF07715 TonB-dependent Receptor Plug Domain KBU60_21835 PF00593 TonB dependent receptor KBU60_21840 PF00005 ABC transporter KBU60_21840 PF00664 ABC transporter transmembrane region KBU60_21845 PF02702 Osmosensitive K+ channel His kinase sensor domain KBU60_21845 PF13493 Domain of unknown function (DUF4118) KBU60_21845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_21845 PF00512 His Kinase A (phospho-acceptor) domain KBU60_21845 PF02702 Osmosensitive K+ channel His kinase sensor domain KBU60_21845 PF13493 Domain of unknown function (DUF4118) KBU60_21845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_21845 PF00512 His Kinase A (phospho-acceptor) domain KBU60_21850 PF00486 Transcriptional regulatory protein, C terminal KBU60_21850 PF00072 Response regulator receiver domain KBU60_21855 PF02254 TrkA-N domain KBU60_21855 PF02080 TrkA-C domain KBU60_21860 PF02386 Cation transport protein KBU60_21865 PF00990 Diguanylate cyclase, GGDEF domain KBU60_21865 PF00563 EAL domain KBU60_21865 PF03707 Bacterial signalling protein N terminal repeat KBU60_21870 PF00127 Copper binding proteins, plastocyanin/azurin family KBU60_21875 PF13419 Haloacid dehalogenase-like hydrolase KBU60_21885 PF01238 Phosphomannose isomerase type I KBU60_21890 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KBU60_21890 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KBU60_21895 PF12833 Helix-turn-helix domain KBU60_21905 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KBU60_21915 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KBU60_21915 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KBU60_21920 PF00199 Catalase KBU60_21920 PF06628 Catalase-related immune-responsive KBU60_21925 PF13417 Glutathione S-transferase, N-terminal domain KBU60_21930 PF16884 N-terminal domain of oxidoreductase KBU60_21930 PF00107 Zinc-binding dehydrogenase KBU60_21935 PF16925 Tetracyclin repressor-like, C-terminal domain KBU60_21935 PF00440 Bacterial regulatory proteins, tetR family KBU60_21940 PF04266 ASCH domain KBU60_21970 PF13439 Glycosyltransferase Family 4 KBU60_21970 PF00534 Glycosyl transferases group 1 KBU60_21980 PF13614 AAA domain KBU60_21980 PF13807 G-rich domain on putative tyrosine kinase KBU60_21980 PF02706 Chain length determinant protein KBU60_21995 PF02397 Bacterial sugar transferase KBU60_22000 PF00005 ABC transporter KBU60_22000 PF08402 TOBE domain KBU60_22005 PF01547 Bacterial extracellular solute-binding protein KBU60_22010 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_22010 PF14785 Maltose transport system permease protein MalF P2 domain KBU60_22015 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_22070 PF01872 RibD C-terminal domain KBU60_22075 PF02909 Tetracyclin repressor-like, C-terminal domain KBU60_22075 PF00440 Bacterial regulatory proteins, tetR family KBU60_22080 PF02798 Glutathione S-transferase, N-terminal domain KBU60_22085 PF00768 D-alanyl-D-alanine carboxypeptidase KBU60_22085 PF07943 Penicillin-binding protein 5, C-terminal domain KBU60_22100 PF08534 Redoxin KBU60_22100 PF00462 Glutaredoxin KBU60_22105 PF00962 Adenosine/AMP deaminase KBU60_22115 PF00313 'Cold-shock' DNA-binding domain KBU60_22120 PF02678 Pirin KBU60_22120 PF05726 Pirin C-terminal cupin domain KBU60_22125 PF01734 Patatin-like phospholipase KBU60_22135 PF01047 MarR family KBU60_22160 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KBU60_22165 PF08019 Phosphoethanolamine transferase EptA/EptB KBU60_22165 PF00884 Sulfatase KBU60_22170 PF01219 Prokaryotic diacylglycerol kinase KBU60_22180 PF00672 HAMP domain KBU60_22180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_22180 PF00512 His Kinase A (phospho-acceptor) domain KBU60_22185 PF00072 Response regulator receiver domain KBU60_22185 PF00486 Transcriptional regulatory protein, C terminal KBU60_22190 PF00106 short chain dehydrogenase KBU60_22205 PF01323 DSBA-like thioredoxin domain KBU60_22220 PF00255 Glutathione peroxidase KBU60_22225 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KBU60_22235 PF07690 Major Facilitator Superfamily KBU60_22245 PF01966 HD domain KBU60_22255 PF07969 Amidohydrolase family KBU60_22260 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin KBU60_22265 PF03448 MgtE intracellular N domain KBU60_22265 PF00571 CBS domain KBU60_22265 PF01769 Divalent cation transporter KBU60_22270 PF03109 ABC1 family KBU60_22280 PF00392 Bacterial regulatory proteins, gntR family KBU60_22280 PF00155 Aminotransferase class I and II KBU60_22285 PF13520 Amino acid permease KBU60_22290 PF01037 Lrp/AsnC ligand binding domain KBU60_22290 PF13404 AsnC-type helix-turn-helix domain KBU60_22295 PF03466 LysR substrate binding domain KBU60_22295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_22310 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KBU60_22310 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KBU60_22315 PF00512 His Kinase A (phospho-acceptor) domain KBU60_22315 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KBU60_22315 PF00672 HAMP domain KBU60_22315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_22315 PF01627 Hpt domain KBU60_22315 PF00072 Response regulator receiver domain KBU60_22320 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KBU60_22325 PF01554 MatE KBU60_22330 PF04363 Protein of unknown function (DUF496) KBU60_22340 PF04337 Protein of unknown function, DUF480 KBU60_22345 PF01541 GIY-YIG catalytic domain KBU60_22350 PF13407 Periplasmic binding protein domain KBU60_22355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_22355 PF00512 His Kinase A (phospho-acceptor) domain KBU60_22355 PF09308 LuxQ, periplasmic KBU60_22355 PF00072 Response regulator receiver domain KBU60_22365 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KBU60_22365 PF00529 HlyD membrane-fusion protein of T1SS KBU60_22385 PF01037 Lrp/AsnC ligand binding domain KBU60_22410 PF02355 Protein export membrane protein KBU60_22410 PF13721 SecD export protein N-terminal TM region KBU60_22410 PF07549 SecD/SecF GG Motif KBU60_22415 PF02355 Protein export membrane protein KBU60_22415 PF07549 SecD/SecF GG Motif KBU60_22430 PF00106 short chain dehydrogenase KBU60_22435 PF00108 Thiolase, N-terminal domain KBU60_22435 PF02803 Thiolase, C-terminal domain KBU60_22445 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus KBU60_22445 PF00561 alpha/beta hydrolase fold KBU60_22455 PF03264 NapC/NirT cytochrome c family, N-terminal region KBU60_22460 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) KBU60_22465 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KBU60_22465 PF01568 Molydopterin dinucleotide binding domain KBU60_22465 PF00384 Molybdopterin oxidoreductase KBU60_22475 PF12838 4Fe-4S dicluster domain KBU60_22475 PF13187 4Fe-4S dicluster domain KBU60_22480 PF00672 HAMP domain KBU60_22480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_22480 PF07730 Histidine kinase KBU60_22480 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term KBU60_22485 PF00196 Bacterial regulatory proteins, luxR family KBU60_22485 PF00072 Response regulator receiver domain KBU60_22500 PF07687 Peptidase dimerisation domain KBU60_22500 PF01546 Peptidase family M20/M25/M40 KBU60_22505 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KBU60_22510 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KBU60_22515 PF00873 AcrB/AcrD/AcrF family KBU60_22520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KBU60_22520 PF00672 HAMP domain KBU60_22520 PF12729 Four helix bundle sensory module for signal transduction KBU60_22525 PF00472 RF-1 domain KBU60_22530 PF13419 Haloacid dehalogenase-like hydrolase KBU60_22535 PF00691 OmpA family KBU60_22535 PF01389 OmpA-like transmembrane domain KBU60_22540 PF00793 DAHP synthetase I family KBU60_22545 PF07690 Major Facilitator Superfamily KBU60_22550 PF08447 PAS fold KBU60_22550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KBU60_22555 PF00456 Transketolase, thiamine diphosphate binding domain KBU60_22555 PF02779 Transketolase, pyrimidine binding domain KBU60_22555 PF02780 Transketolase, C-terminal domain KBU60_22560 PF00923 Transaldolase/Fructose-6-phosphate aldolase KBU60_22570 PF08329 Chitinase A, N-terminal domain KBU60_22570 PF00704 Glycosyl hydrolases family 18 KBU60_22575 PF00563 EAL domain KBU60_22575 PF00990 Diguanylate cyclase, GGDEF domain KBU60_22575 PF03707 Bacterial signalling protein N terminal repeat KBU60_22580 PF00581 Rhodanese-like domain KBU60_22600 PF00899 ThiF family KBU60_22605 PF00994 Probable molybdopterin binding domain KBU60_22605 PF03453 MoeA N-terminal region (domain I and II) KBU60_22605 PF03454 MoeA C-terminal region (domain IV) KBU60_22610 PF01227 GTP cyclohydrolase I KBU60_22615 PF01566 Natural resistance-associated macrophage protein KBU60_22625 PF00654 Voltage gated chloride channel KBU60_22640 PF00248 Aldo/keto reductase family KBU60_22645 PF00072 Response regulator receiver domain KBU60_22655 PF01256 Carbohydrate kinase KBU60_22655 PF03853 YjeF-related protein N-terminus KBU60_22660 PF00478 IMP dehydrogenase / GMP reductase domain KBU60_22665 PF13193 AMP-binding enzyme C-terminal domain KBU60_22665 PF00501 AMP-binding enzyme KBU60_22670 PF00766 Electron transfer flavoprotein FAD-binding domain KBU60_22670 PF01012 Electron transfer flavoprotein domain KBU60_22675 PF01012 Electron transfer flavoprotein domain KBU60_22685 PF12399 Branched-chain amino acid ATP-binding cassette transporter KBU60_22685 PF00005 ABC transporter KBU60_22710 PF00005 ABC transporter KBU60_22715 PF00501 AMP-binding enzyme KBU60_22715 PF14535 AMP-binding enzyme C-terminal domain KBU60_22730 PF00034 Cytochrome c KBU60_22740 PF13411 MerR HTH family regulatory protein KBU60_22745 PF02627 Carboxymuconolactone decarboxylase family KBU60_22750 PF02567 Phenazine biosynthesis-like protein KBU60_22760 PF02322 Cytochrome bd terminal oxidase subunit II KBU60_22765 PF01654 Cytochrome bd terminal oxidase subunit I KBU60_22770 PF00392 Bacterial regulatory proteins, gntR family KBU60_22770 PF00155 Aminotransferase class I and II KBU60_22775 PF12464 Maltose acetyltransferase KBU60_22775 PF14602 Hexapeptide repeat of succinyl-transferase KBU60_22780 PF12795 Mechanosensitive ion channel porin domain KBU60_22780 PF12794 Mechanosensitive ion channel inner membrane domain 1 KBU60_22780 PF00924 Mechanosensitive ion channel KBU60_22795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_22795 PF00512 His Kinase A (phospho-acceptor) domain KBU60_22795 PF00072 Response regulator receiver domain KBU60_22795 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KBU60_22795 PF01627 Hpt domain KBU60_22795 PF00672 HAMP domain KBU60_22800 PF00682 HMGL-like KBU60_22805 PF02785 Biotin carboxylase C-terminal domain KBU60_22805 PF00289 Biotin carboxylase, N-terminal domain KBU60_22805 PF00364 Biotin-requiring enzyme KBU60_22805 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KBU60_22810 PF00378 Enoyl-CoA hydratase/isomerase KBU60_22815 PF01039 Carboxyl transferase domain KBU60_22820 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KBU60_22820 PF02770 Acyl-CoA dehydrogenase, middle domain KBU60_22820 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KBU60_22825 PF09278 MerR, DNA binding KBU60_22825 PF00376 MerR family regulatory protein KBU60_22830 PF00108 Thiolase, N-terminal domain KBU60_22830 PF02803 Thiolase, C-terminal domain KBU60_22835 PF00171 Aldehyde dehydrogenase family KBU60_22840 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KBU60_22840 PF02770 Acyl-CoA dehydrogenase, middle domain KBU60_22840 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KBU60_22845 PF00378 Enoyl-CoA hydratase/isomerase KBU60_22855 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KBU60_22855 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KBU60_22865 PF17151 Periplasmic sensor domain KBU60_22865 PF00990 Diguanylate cyclase, GGDEF domain KBU60_22870 PF13977 BetI-type transcriptional repressor, C-terminal KBU60_22870 PF00440 Bacterial regulatory proteins, tetR family KBU60_22875 PF00171 Aldehyde dehydrogenase family KBU60_22880 PF05199 GMC oxidoreductase KBU60_22880 PF00732 GMC oxidoreductase KBU60_22885 PF04069 Substrate binding domain of ABC-type glycine betaine transport system KBU60_22890 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_22895 PF00005 ABC transporter KBU60_22895 PF00571 CBS domain KBU60_22900 PF00881 Nitroreductase family KBU60_22910 PF01145 SPFH domain / Band 7 family KBU60_22910 PF16200 C-terminal region of band_7 KBU60_22920 PF13188 PAS domain KBU60_22920 PF00563 EAL domain KBU60_22920 PF00990 Diguanylate cyclase, GGDEF domain KBU60_22920 PF03707 Bacterial signalling protein N terminal repeat KBU60_22925 PF00034 Cytochrome c KBU60_22925 PF03150 Di-haem cytochrome c peroxidase KBU60_22930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KBU60_22930 PF00512 His Kinase A (phospho-acceptor) domain KBU60_22930 PF09308 LuxQ, periplasmic KBU60_22930 PF00072 Response regulator receiver domain KBU60_22945 PF04116 Fatty acid hydroxylase superfamily KBU60_22985 PF01048 Phosphorylase superfamily KBU60_22990 PF00990 Diguanylate cyclase, GGDEF domain KBU60_22990 PF00563 EAL domain KBU60_22995 PF05025 RbsD / FucU transport protein family KBU60_23000 PF00005 ABC transporter KBU60_23005 PF02653 Branched-chain amino acid transport system / permease component KBU60_23010 PF13407 Periplasmic binding protein domain KBU60_23015 PF00294 pfkB family carbohydrate kinase KBU60_23020 PF00356 Bacterial regulatory proteins, lacI family KBU60_23025 PF04973 Nicotinamide mononucleotide transporter KBU60_23030 PF01048 Phosphorylase superfamily KBU60_23050 PF00486 Transcriptional regulatory protein, C terminal KBU60_23050 PF00072 Response regulator receiver domain KBU60_23065 PF00245 Alkaline phosphatase KBU60_23075 PF01483 Proprotein convertase P-domain KBU60_23075 PF00082 Subtilase family KBU60_23085 PF00990 Diguanylate cyclase, GGDEF domain KBU60_23085 PF00072 Response regulator receiver domain KBU60_23090 PF03222 Tryptophan/tyrosine permease family KBU60_23100 PF00384 Molybdopterin oxidoreductase KBU60_23100 PF01568 Molydopterin dinucleotide binding domain KBU60_23100 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KBU60_23105 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KBU60_23105 PF14824 Sirohaem biosynthesis protein central KBU60_23105 PF10414 Sirohaem synthase dimerisation region KBU60_23110 PF02885 Glycosyl transferase family, helical bundle domain KBU60_23110 PF00591 Glycosyl transferase family, a/b domain KBU60_23115 PF01738 Dienelactone hydrolase family KBU60_23120 PF08376 Nitrate and nitrite sensing KBU60_23120 PF03861 ANTAR domain KBU60_23130 PF00528 Binding-protein-dependent transport system inner membrane component KBU60_23135 PF00005 ABC transporter KBU60_23140 PF04324 BFD-like [2Fe-2S] binding domain KBU60_23140 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KBU60_23140 PF18267 Rubredoxin NAD+ reductase C-terminal domain KBU60_23140 PF13806 Rieske-like [2Fe-2S] domain KBU60_23140 PF07992 Pyridine nucleotide-disulphide oxidoreductase KBU60_23140 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KBU60_23155 PF00440 Bacterial regulatory proteins, tetR family KBU60_23155 PF08361 MAATS-type transcriptional repressor, C-terminal region KBU60_23170 PF00072 Response regulator receiver domain KBU60_23170 PF00211 Adenylate and Guanylate cyclase catalytic domain KBU60_23195 PF00069 Protein kinase domain KBU60_23195 PF03793 PASTA domain KBU60_23210 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE KBU60_23215 PF13677 Membrane MotB of proton-channel complex MotA/MotB KBU60_23215 PF00691 OmpA family KBU60_23220 PF06761 Intracellular multiplication and human macrophage-killing KBU60_23220 PF14331 ImcF-related N-terminal domain KBU60_23220 PF06744 Type VI secretion protein IcmF C-terminal KBU60_23240 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 KBU60_23245 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath KBU60_23250 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath KBU60_23265 PF05947 Type VI secretion system, TssF KBU60_23275 PF17871 AAA lid domain KBU60_23275 PF10431 C-terminal, D2-small domain, of ClpB protein KBU60_23275 PF00004 ATPase family associated with various cellular activities (AAA) KBU60_23275 PF07724 AAA domain (Cdc48 subfamily) KBU60_23285 PF04717 Type VI secretion system, phage-baseplate injector KBU60_23285 PF06715 Gp5 C-terminal repeat (3 copies) KBU60_23300 PF12320 Type 5 capsule protein repressor C-terminal domain KBU60_23300 PF00149 Calcineurin-like phosphoesterase KBU60_23305 PF13476 AAA domain KBU60_23325 PF08212 Lipocalin-like domain KBU60_23335 PF07690 Major Facilitator Superfamily KBU60_23345 PF03606 C4-dicarboxylate anaerobic carrier KBU60_23350 PF00034 Cytochrome c KBU60_23355 PF01212 Beta-eliminating lyase KBU60_23365 PF07728 AAA domain (dynein-related subfamily) KBU60_23365 PF17868 AAA lid domain KBU60_23365 PF12592 Protein of unknown function (DUF3763) KBU60_23370 PF05762 VWA domain containing CoxE-like protein KBU60_23385 PF03466 LysR substrate binding domain KBU60_23385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KBU60_23390 PF01565 FAD binding domain KBU60_23390 PF09330 D-lactate dehydrogenase, membrane binding KBU60_23405 PF00842 Alanine racemase, C-terminal domain KBU60_23405 PF01168 Alanine racemase, N-terminal domain KBU60_23410 PF00672 HAMP domain KBU60_23410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KBU60_23425 PF00128 Alpha amylase, catalytic domain KBU60_23425 PF09154 Domain of unknown function (DUF1939) KBU60_23445 PF06965 Na+/H+ antiporter 1 KBU60_23445 PF13462 Thioredoxin