locus-tag class description JK088_00005 PF00308 Bacterial dnaA protein JK088_00005 PF08299 Bacterial dnaA protein helix-turn-helix JK088_00005 PF11638 DnaA N-terminal domain JK088_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain JK088_00010 PF02767 DNA polymerase III beta subunit, central domain JK088_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain JK088_00015 PF02463 RecF/RecN/SMC N terminal domain JK088_00020 PF00204 DNA gyrase B JK088_00020 PF00986 DNA gyrase B subunit, carboxyl terminus JK088_00020 PF18053 DNA gyrase B subunit insert domain JK088_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_00020 PF01751 Toprim domain JK088_00030 PF00011 Hsp20/alpha crystallin family JK088_00035 PF00155 Aminotransferase class I and II JK088_00040 PF00128 Alpha amylase, catalytic domain JK088_00045 PF05746 DALR anticodon binding domain JK088_00045 PF02092 Glycyl-tRNA synthetase beta subunit JK088_00050 PF02091 Glycyl-tRNA synthetase alpha subunit JK088_00055 PF01169 Uncharacterized protein family UPF0016 JK088_00065 PF01206 Sulfurtransferase TusA JK088_00075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_00075 PF03466 LysR substrate binding domain JK088_00080 PF08240 Alcohol dehydrogenase GroES-like domain JK088_00080 PF00107 Zinc-binding dehydrogenase JK088_00085 PF00108 Thiolase, N-terminal domain JK088_00085 PF02803 Thiolase, C-terminal domain JK088_00090 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JK088_00090 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JK088_00090 PF00378 Enoyl-CoA hydratase/isomerase JK088_00095 PF09186 Domain of unknown function (DUF1949) JK088_00095 PF01205 Uncharacterized protein family UPF0029 JK088_00100 PF02386 Cation transport protein JK088_00105 PF12724 Flavodoxin domain JK088_00140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_00140 PF03466 LysR substrate binding domain JK088_00145 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain JK088_00145 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain JK088_00150 PF04380 Membrane fusogenic activity JK088_00155 PF00873 AcrB/AcrD/AcrF family JK088_00160 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JK088_00165 PF16295 Tetracyclin repressor-like, C-terminal domain JK088_00165 PF00440 Bacterial regulatory proteins, tetR family JK088_00170 PF00580 UvrD/REP helicase N-terminal domain JK088_00170 PF13361 UvrD-like helicase C-terminal domain JK088_00175 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JK088_00205 PF13419 Haloacid dehalogenase-like hydrolase JK088_00210 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JK088_00210 PF00005 ABC transporter JK088_00215 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JK088_00220 PF00528 Binding-protein-dependent transport system inner membrane component JK088_00225 PF00528 Binding-protein-dependent transport system inner membrane component JK088_00225 PF12911 N-terminal TM domain of oligopeptide transport permease C JK088_00255 PF00069 Protein kinase domain JK088_00260 PF00356 Bacterial regulatory proteins, lacI family JK088_00260 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JK088_00265 PF03466 LysR substrate binding domain JK088_00265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_00270 PF00893 Small Multidrug Resistance protein JK088_00275 PF00893 Small Multidrug Resistance protein JK088_00280 PF00920 Dehydratase family JK088_00285 PF01202 Shikimate kinase JK088_00290 PF02447 GntP family permease JK088_00295 PF01081 KDPG and KHG aldolase JK088_00300 PF01048 Phosphorylase superfamily JK088_00305 PF03466 LysR substrate binding domain JK088_00305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_00310 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JK088_00310 PF07992 Pyridine nucleotide-disulphide oxidoreductase JK088_00315 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ JK088_00320 PF01432 Peptidase family M3 JK088_00325 PF01037 Lrp/AsnC ligand binding domain JK088_00330 PF00563 EAL domain JK088_00330 PF00990 Diguanylate cyclase, GGDEF domain JK088_00330 PF08448 PAS fold JK088_00335 PF04445 Putative SAM-dependent methyltransferase JK088_00345 PF00892 EamA-like transporter family JK088_00350 PF00582 Universal stress protein family JK088_00355 PF00210 Ferritin-like domain JK088_00360 PF10625 Universal stress protein B (UspB) JK088_00370 PF00158 Sigma-54 interaction domain JK088_00370 PF02954 Bacterial regulatory protein, Fis family JK088_00370 PF01590 GAF domain JK088_00375 PF04972 BON domain JK088_00395 PF00781 Diacylglycerol kinase catalytic domain JK088_00425 PF01594 AI-2E family transporter JK088_00430 PF03707 Bacterial signalling protein N terminal repeat JK088_00430 PF00563 EAL domain JK088_00430 PF00990 Diguanylate cyclase, GGDEF domain JK088_00440 PF02646 RmuC family JK088_00445 PF01209 ubiE/COQ5 methyltransferase family JK088_00450 PF02036 SCP-2 sterol transfer family JK088_00455 PF03109 ABC1 family JK088_00460 PF02416 mttA/Hcf106 family JK088_00465 PF02416 mttA/Hcf106 family JK088_00470 PF00902 Sec-independent protein translocase protein (TatC) JK088_00475 PF01026 TatD related DNase JK088_00480 PF00490 Delta-aminolevulinic acid dehydratase JK088_00490 PF01367 5'-3' exonuclease, C-terminal SAM fold JK088_00490 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JK088_00490 PF00476 DNA polymerase family A JK088_00490 PF01612 3'-5' exonuclease JK088_00495 PF01926 50S ribosome-binding GTPase JK088_00500 PF00034 Cytochrome c JK088_00515 PF04220 Der GTPase activator (YihI) JK088_00520 PF10675 Protein of unknown function (DUF2489) JK088_00525 PF06969 HemN C-terminal domain JK088_00525 PF04055 Radical SAM superfamily JK088_00530 PF00962 Adenosine/AMP deaminase JK088_00535 PF00563 EAL domain JK088_00535 PF00990 Diguanylate cyclase, GGDEF domain JK088_00535 PF03707 Bacterial signalling protein N terminal repeat JK088_00540 PF00158 Sigma-54 interaction domain JK088_00540 PF02954 Bacterial regulatory protein, Fis family JK088_00540 PF00072 Response regulator receiver domain JK088_00545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_00545 PF00512 His Kinase A (phospho-acceptor) domain JK088_00545 PF00989 PAS fold JK088_00555 PF00120 Glutamine synthetase, catalytic domain JK088_00555 PF03951 Glutamine synthetase, beta-Grasp domain JK088_00560 PF00679 Elongation factor G C-terminus JK088_00560 PF00009 Elongation factor Tu GTP binding domain JK088_00560 PF03144 Elongation factor Tu domain 2 JK088_00575 PF03631 Virulence factor BrkB JK088_00580 PF02580 D-Tyr-tRNA(Tyr) deacylase JK088_00585 PF00583 Acetyltransferase (GNAT) family JK088_00585 PF09500 Putative thioesterase (yiiD_Cterm) JK088_00595 PF01293 Phosphoenolpyruvate carboxykinase JK088_00600 PF01430 Hsp33 protein JK088_00605 PF01479 S4 domain JK088_00610 PF11356 Type II secretion system protein C JK088_00615 PF00263 Bacterial type II and III secretion system protein JK088_00615 PF03958 Bacterial type II/III secretion system short domain JK088_00620 PF00437 Type II/IV secretion system protein JK088_00625 PF00482 Type II secretion system (T2SS), protein F JK088_00630 PF08334 Type II secretion system (T2SS), protein G JK088_00630 PF07963 Prokaryotic N-terminal methylation motif JK088_00635 PF12019 Type II transport protein GspH JK088_00640 PF02501 Type II secretion system (T2SS), protein I JK088_00640 PF07963 Prokaryotic N-terminal methylation motif JK088_00645 PF11612 Type II secretion system (T2SS), protein J JK088_00645 PF07963 Prokaryotic N-terminal methylation motif JK088_00650 PF03934 Type II secretion system (T2SS), protein K JK088_00655 PF12693 GspL periplasmic domain JK088_00655 PF05134 Type II secretion system (T2SS), protein L JK088_00660 PF04612 Type II secretion system (T2SS), protein M JK088_00665 PF01203 Type II secretion system (T2SS), protein N JK088_00670 PF00459 Inositol monophosphatase family JK088_00675 PF00293 NUDIX domain JK088_00680 PF01521 Iron-sulphur cluster biosynthesis JK088_00680 PF01106 NifU-like domain JK088_00685 PF00156 Phosphoribosyl transferase domain JK088_00690 PF00561 alpha/beta hydrolase fold JK088_00700 PF17674 HHH domain JK088_00700 PF09371 Tex-like protein N-terminal domain JK088_00700 PF16921 Tex protein YqgF-like domain JK088_00700 PF00575 S1 RNA binding domain JK088_00710 PF03449 Transcription elongation factor, N-terminal JK088_00710 PF01272 Transcription elongation factor, GreA/GreB, C-term JK088_00720 PF00072 Response regulator receiver domain JK088_00720 PF00486 Transcriptional regulatory protein, C terminal JK088_00725 PF00672 HAMP domain JK088_00725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_00725 PF00512 His Kinase A (phospho-acceptor) domain JK088_00730 PF00860 Permease family JK088_00735 PF00270 DEAD/DEAH box helicase JK088_00735 PF00271 Helicase conserved C-terminal domain JK088_00735 PF17191 RecG wedge domain JK088_00740 PF00588 SpoU rRNA Methylase family JK088_00740 PF12105 SpoU, rRNA methylase, C-terminal JK088_00745 PF02824 TGS domain JK088_00745 PF04607 Region found in RelA / SpoT proteins JK088_00745 PF13291 ACT domain JK088_00750 PF01192 RNA polymerase Rpb6 JK088_00755 PF00625 Guanylate kinase JK088_00770 PF02472 Biopolymer transport protein ExbD/TolR JK088_00775 PF01618 MotA/TolQ/ExbB proton channel family JK088_00790 PF07715 TonB-dependent Receptor Plug Domain JK088_00790 PF00593 TonB dependent receptor JK088_00795 PF00528 Binding-protein-dependent transport system inner membrane component JK088_00800 PF00528 Binding-protein-dependent transport system inner membrane component JK088_00800 PF12911 N-terminal TM domain of oligopeptide transport permease C JK088_00805 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JK088_00810 PF00005 ABC transporter JK088_00810 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JK088_00815 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JK088_00815 PF00005 ABC transporter JK088_00825 PF03755 YicC-like family, N-terminal region JK088_00825 PF08340 Domain of unknown function (DUF1732) JK088_00830 PF03725 3' exoribonuclease family, domain 2 JK088_00830 PF01138 3' exoribonuclease family, domain 1 JK088_00835 PF00156 Phosphoribosyl transferase domain JK088_00840 PF03279 Bacterial lipid A biosynthesis acyltransferase JK088_00845 PF00440 Bacterial regulatory proteins, tetR family JK088_00850 PF04127 DNA / pantothenate metabolism flavoprotein JK088_00850 PF02441 Flavoprotein JK088_00855 PF00672 HAMP domain JK088_00855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JK088_00855 PF17200 Single Cache domain 2 JK088_00860 PF04002 RadC-like JAB domain JK088_00865 PF00830 Ribosomal L28 family JK088_00870 PF00471 Ribosomal protein L33 JK088_00880 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JK088_00880 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JK088_00880 PF06827 Zinc finger found in FPG and IleRS JK088_00890 PF05686 Glycosyl transferase family 90 JK088_00895 PF01467 Cytidylyltransferase-like JK088_00900 PF00535 Glycosyl transferase family 2 JK088_00905 PF00535 Glycosyl transferase family 2 JK088_00910 PF01075 Glycosyltransferase family 9 (heptosyltransferase) JK088_00915 PF01219 Prokaryotic diacylglycerol kinase JK088_00925 PF16363 GDP-mannose 4,6 dehydratase JK088_00930 PF00483 Nucleotidyl transferase JK088_00940 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JK088_00940 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JK088_00960 PF00106 short chain dehydrogenase JK088_00965 PF00501 AMP-binding enzyme JK088_00965 PF13193 AMP-binding enzyme C-terminal domain JK088_00970 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JK088_00980 PF02719 Polysaccharide biosynthesis protein JK088_00985 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JK088_00990 PF02350 UDP-N-acetylglucosamine 2-epimerase JK088_00995 PF03102 NeuB family JK088_00995 PF08666 SAF domain JK088_01005 PF00483 Nucleotidyl transferase JK088_01010 PF02348 Cytidylyltransferase JK088_01015 PF07922 Glycosyltransferase family 52 JK088_01020 PF00534 Glycosyl transferases group 1 JK088_01020 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) JK088_01025 PF01075 Glycosyltransferase family 9 (heptosyltransferase) JK088_01030 PF03279 Bacterial lipid A biosynthesis acyltransferase JK088_01035 PF01370 NAD dependent epimerase/dehydratase family JK088_01075 PF01565 FAD binding domain JK088_01075 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JK088_01085 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JK088_01095 PF09587 Bacterial capsule synthesis protein PGA_cap JK088_01100 PF13439 Glycosyltransferase Family 4 JK088_01100 PF00534 Glycosyl transferases group 1 JK088_01105 PF13439 Glycosyltransferase Family 4 JK088_01105 PF00534 Glycosyl transferases group 1 JK088_01120 PF00535 Glycosyl transferase family 2 JK088_01125 PF01370 NAD dependent epimerase/dehydratase family JK088_01130 PF02397 Bacterial sugar transferase JK088_01135 PF02719 Polysaccharide biosynthesis protein JK088_01140 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JK088_01140 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JK088_01140 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JK088_01145 PF01370 NAD dependent epimerase/dehydratase family JK088_01150 PF00483 Nucleotidyl transferase JK088_01185 PF00121 Triosephosphate isomerase JK088_01205 PF00455 DeoR C terminal sensor domain JK088_01205 PF08220 DeoR-like helix-turn-helix domain JK088_01210 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded JK088_01215 PF06005 Cell division protein ZapB JK088_01220 PF03737 Aldolase/RraA JK088_01225 PF01040 UbiA prenyltransferase family JK088_01255 PF04002 RadC-like JAB domain JK088_01270 PF00004 ATPase family associated with various cellular activities (AAA) JK088_01270 PF07724 AAA domain (Cdc48 subfamily) JK088_01275 PF00227 Proteasome subunit JK088_01285 PF00356 Bacterial regulatory proteins, lacI family JK088_01290 PF18319 PriA DNA helicase Cys-rich region (CRR) domain JK088_01290 PF00270 DEAD/DEAH box helicase JK088_01290 PF00271 Helicase conserved C-terminal domain JK088_01290 PF18074 Primosomal protein N C-terminal domain JK088_01290 PF17764 3′ DNA-binding domain (3′BD) JK088_01295 PF01197 Ribosomal protein L31 JK088_01300 PF00338 Ribosomal protein S10p/S20e JK088_01305 PF00297 Ribosomal protein L3 JK088_01310 PF00573 Ribosomal protein L4/L1 family JK088_01315 PF00276 Ribosomal protein L23 JK088_01320 PF00181 Ribosomal Proteins L2, RNA binding domain JK088_01320 PF03947 Ribosomal Proteins L2, C-terminal domain JK088_01325 PF00203 Ribosomal protein S19 JK088_01330 PF00237 Ribosomal protein L22p/L17e JK088_01335 PF00189 Ribosomal protein S3, C-terminal domain JK088_01335 PF07650 KH domain JK088_01340 PF00252 Ribosomal protein L16p/L10e JK088_01345 PF00831 Ribosomal L29 protein JK088_01350 PF00366 Ribosomal protein S17 JK088_01355 PF00238 Ribosomal protein L14p/L23e JK088_01360 PF00467 KOW motif JK088_01360 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JK088_01365 PF00281 Ribosomal protein L5 JK088_01365 PF00673 ribosomal L5P family C-terminus JK088_01370 PF00253 Ribosomal protein S14p/S29e JK088_01375 PF00410 Ribosomal protein S8 JK088_01380 PF00347 Ribosomal protein L6 JK088_01385 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JK088_01390 PF00333 Ribosomal protein S5, N-terminal domain JK088_01390 PF03719 Ribosomal protein S5, C-terminal domain JK088_01395 PF00327 Ribosomal protein L30p/L7e JK088_01400 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A JK088_01405 PF00344 SecY translocase JK088_01410 PF00444 Ribosomal protein L36 JK088_01415 PF00416 Ribosomal protein S13/S18 JK088_01420 PF00411 Ribosomal protein S11 JK088_01425 PF00163 Ribosomal protein S4/S9 N-terminal domain JK088_01425 PF01479 S4 domain JK088_01430 PF01000 RNA polymerase Rpb3/RpoA insert domain JK088_01430 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain JK088_01430 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain JK088_01435 PF01196 Ribosomal protein L17 JK088_01445 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JK088_01445 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JK088_01455 PF13673 Acetyltransferase (GNAT) domain JK088_01460 PF00271 Helicase conserved C-terminal domain JK088_01460 PF03880 DbpA RNA binding domain JK088_01460 PF00270 DEAD/DEAH box helicase JK088_01470 PF02872 5'-nucleotidase, C-terminal domain JK088_01470 PF00149 Calcineurin-like phosphoesterase JK088_01475 PF10414 Sirohaem synthase dimerisation region JK088_01475 PF14824 Sirohaem biosynthesis protein central JK088_01475 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JK088_01480 PF01507 Phosphoadenosine phosphosulfate reductase family JK088_01485 PF00009 Elongation factor Tu GTP binding domain JK088_01490 PF03600 Citrate transporter JK088_01490 PF02080 TrkA-C domain JK088_01515 PF00005 ABC transporter JK088_01525 PF10795 Protein of unknown function (DUF2607) JK088_01530 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) JK088_01535 PF06526 Protein of unknown function (DUF1107) JK088_01540 PF01625 Peptide methionine sulfoxide reductase JK088_01545 PF17243 POTRA domain TamA domain 1 JK088_01545 PF01103 Surface antigen JK088_01550 PF04357 TamB, inner membrane protein subunit of TAM complex JK088_01555 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like JK088_01565 PF00719 Inorganic pyrophosphatase JK088_01570 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain JK088_01575 PF02875 Mur ligase family, glutamate ligase domain JK088_01575 PF08245 Mur ligase middle domain JK088_01575 PF01225 Mur ligase family, catalytic domain JK088_01580 PF02441 Flavoprotein JK088_01590 PF00528 Binding-protein-dependent transport system inner membrane component JK088_01595 PF00005 ABC transporter JK088_01610 PF16868 NMT1-like family JK088_01615 PF02863 Arginine repressor, C-terminal domain JK088_01615 PF01316 Arginine repressor, DNA binding domain JK088_01620 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JK088_01620 PF00056 lactate/malate dehydrogenase, NAD binding domain JK088_01630 PF00348 Polyprenyl synthetase JK088_01635 PF00829 Ribosomal prokaryotic L21 protein JK088_01640 PF01016 Ribosomal L27 protein JK088_01645 PF01926 50S ribosome-binding GTPase JK088_01645 PF01018 GTP1/OBG JK088_01650 PF06738 Putative threonine/serine exporter JK088_01655 PF12821 Threonine/Serine exporter, ThrE JK088_01660 PF00186 Dihydrofolate reductase JK088_01665 PF00149 Calcineurin-like phosphoesterase JK088_01670 PF04379 ApaG domain JK088_01675 PF00398 Ribosomal RNA adenine dimethylase JK088_01680 PF04166 Pyridoxal phosphate biosynthetic protein PdxA JK088_01685 PF09312 SurA N-terminal domain JK088_01690 PF04453 LPS transport system D JK088_01690 PF03968 OstA-like protein JK088_01695 PF05099 Tellurite resistance protein TerB JK088_01695 PF00226 DnaJ domain JK088_01705 PF00694 Aconitase C-terminal domain JK088_01710 PF00330 Aconitase family (aconitate hydratase) JK088_01715 PF00180 Isocitrate/isopropylmalate dehydrogenase JK088_01720 PF00682 HMGL-like JK088_01720 PF08502 LeuA allosteric (dimerisation) domain JK088_01730 PF01569 PAP2 superfamily JK088_01740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_01740 PF03466 LysR substrate binding domain JK088_01745 PF00501 AMP-binding enzyme JK088_01750 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JK088_01750 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JK088_01750 PF00205 Thiamine pyrophosphate enzyme, central domain JK088_01755 PF10369 Small subunit of acetolactate synthase JK088_01760 PF00990 Diguanylate cyclase, GGDEF domain JK088_01770 PF02887 Pyruvate kinase, alpha/beta domain JK088_01770 PF00224 Pyruvate kinase, barrel domain JK088_01775 PF00455 DeoR C terminal sensor domain JK088_01775 PF08220 DeoR-like helix-turn-helix domain JK088_01780 PF01380 SIS domain JK088_01790 PF00072 Response regulator receiver domain JK088_01790 PF00486 Transcriptional regulatory protein, C terminal JK088_01795 PF00512 His Kinase A (phospho-acceptor) domain JK088_01795 PF00672 HAMP domain JK088_01795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_01800 PF13419 Haloacid dehalogenase-like hydrolase JK088_01805 PF05068 Mannitol repressor JK088_01810 PF01232 Mannitol dehydrogenase Rossmann domain JK088_01810 PF08125 Mannitol dehydrogenase C-terminal domain JK088_01815 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JK088_01815 PF02378 Phosphotransferase system, EIIC JK088_01815 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JK088_01845 PF03180 NLPA lipoprotein JK088_01905 PF02463 RecF/RecN/SMC N terminal domain JK088_01910 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) JK088_01915 PF02899 Phage integrase, N-terminal SAM-like domain JK088_01915 PF00589 Phage integrase family JK088_01930 PF00140 Sigma-70 factor, region 1.2 JK088_01930 PF03979 Sigma-70 factor, region 1.1 JK088_01930 PF04542 Sigma-70 region 2 JK088_01930 PF04539 Sigma-70 region 3 JK088_01930 PF04545 Sigma-70, region 4 JK088_01930 PF04546 Sigma-70, non-essential region JK088_01935 PF10410 DnaB-helicase binding domain of primase JK088_01935 PF08278 DNA primase DnaG DnaB-binding JK088_01935 PF08275 DNA primase catalytic core, N-terminal domain JK088_01935 PF01807 CHC2 zinc finger JK088_01940 PF09424 Yqey-like protein JK088_01945 PF01165 Ribosomal protein S21 JK088_01950 PF00814 Glycoprotease family JK088_01955 PF12697 Alpha/beta hydrolase family JK088_01960 PF02660 Glycerol-3-phosphate acyltransferase JK088_01965 PF02152 Dihydroneopterin aldolase JK088_01970 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JK088_01975 PF02673 Bacitracin resistance protein BacA JK088_01980 PF01966 HD domain JK088_01980 PF01743 Poly A polymerase head domain JK088_01980 PF12627 Probable RNA and SrmB- binding site of polymerase A JK088_01985 PF01471 Putative peptidoglycan binding domain JK088_01985 PF13401 AAA domain JK088_01995 PF08239 Bacterial SH3 domain JK088_02000 PF01384 Phosphate transporter family JK088_02005 PF01865 Protein of unknown function DUF47 JK088_02010 PF01928 CYTH domain JK088_02020 PF00672 HAMP domain JK088_02020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JK088_02025 PF08335 GlnD PII-uridylyltransferase JK088_02025 PF03710 Glutamate-ammonia ligase adenylyltransferase JK088_02030 PF01467 Cytidylyltransferase-like JK088_02030 PF00294 pfkB family carbohydrate kinase JK088_02035 PF02321 Outer membrane efflux protein JK088_02040 PF00293 NUDIX domain JK088_02045 PF06853 Protein of unknown function (DUF1249) JK088_02050 PF00149 Calcineurin-like phosphoesterase JK088_02055 PF05728 Uncharacterised protein family (UPF0227) JK088_02060 PF00204 DNA gyrase B JK088_02060 PF00986 DNA gyrase B subunit, carboxyl terminus JK088_02060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_02060 PF01751 Toprim domain JK088_02065 PF03989 DNA gyrase C-terminal domain, beta-propeller JK088_02065 PF00521 DNA gyrase/topoisomerase IV, subunit A JK088_02070 PF13180 PDZ domain JK088_02075 PF00595 PDZ domain JK088_02080 PF06295 Protein of unknown function (DUF1043) JK088_02085 PF03969 AFG1-like ATPase JK088_02090 PF00572 Ribosomal protein L13 JK088_02095 PF00380 Ribosomal protein S9/S16 JK088_02100 PF00355 Rieske [2Fe-2S] domain JK088_02100 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal JK088_02105 PF00032 Cytochrome b(C-terminal)/b6/petD JK088_02105 PF00033 Cytochrome b/b6/petB JK088_02110 PF02167 Cytochrome C1 family JK088_02115 PF02798 Glutathione S-transferase, N-terminal domain JK088_02115 PF00043 Glutathione S-transferase, C-terminal domain JK088_02120 PF04386 Stringent starvation protein B JK088_02125 PF04972 BON domain JK088_02130 PF13580 SIS domain JK088_02135 PF02021 Uncharacterised protein family UPF0102 JK088_02140 PF04348 LppC putative lipoprotein JK088_02145 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JK088_02155 PF01795 MraW methylase family JK088_02160 PF04999 Cell division protein FtsL JK088_02165 PF00905 Penicillin binding protein transpeptidase domain JK088_02165 PF03717 Penicillin-binding Protein dimerisation domain JK088_02170 PF01225 Mur ligase family, catalytic domain JK088_02170 PF02875 Mur ligase family, glutamate ligase domain JK088_02170 PF08245 Mur ligase middle domain JK088_02175 PF02875 Mur ligase family, glutamate ligase domain JK088_02175 PF08245 Mur ligase middle domain JK088_02175 PF01225 Mur ligase family, catalytic domain JK088_02180 PF00953 Glycosyl transferase family 4 JK088_02180 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 JK088_02185 PF02875 Mur ligase family, glutamate ligase domain JK088_02185 PF08245 Mur ligase middle domain JK088_02190 PF01098 Cell cycle protein JK088_02195 PF03033 Glycosyltransferase family 28 N-terminal domain JK088_02195 PF04101 Glycosyltransferase family 28 C-terminal domain JK088_02200 PF02875 Mur ligase family, glutamate ligase domain JK088_02200 PF01225 Mur ligase family, catalytic domain JK088_02200 PF08245 Mur ligase middle domain JK088_02205 PF08478 POTRA domain, FtsQ-type JK088_02205 PF03799 Cell division protein FtsQ JK088_02210 PF02491 SHS2 domain inserted in FTSA JK088_02215 PF00091 Tubulin/FtsZ family, GTPase domain JK088_02215 PF12327 FtsZ family, C-terminal domain JK088_02220 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase JK088_02230 PF02810 SEC-C motif JK088_02230 PF07517 SecA DEAD-like domain JK088_02230 PF01043 SecA preprotein cross-linking domain JK088_02230 PF07516 SecA Wing and Scaffold domain JK088_02235 PF00293 NUDIX domain JK088_02240 PF01113 Dihydrodipicolinate reductase, N-terminus JK088_02240 PF05173 Dihydrodipicolinate reductase, C-terminus JK088_02245 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain JK088_02245 PF00117 Glutamine amidotransferase class-I JK088_02250 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JK088_02250 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain JK088_02250 PF02142 MGS-like domain JK088_02265 PF01925 Sulfite exporter TauE/SafE JK088_02270 PF03466 LysR substrate binding domain JK088_02270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_02275 PF03458 UPF0126 domain JK088_02280 PF01497 Periplasmic binding protein JK088_02285 PF17113 Regulatory signalling modulator protein AmpE JK088_02285 PF03186 CobD/Cbib protein JK088_02290 PF01048 Phosphorylase superfamily JK088_02300 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JK088_02300 PF07992 Pyridine nucleotide-disulphide oxidoreductase JK088_02305 PF00310 Glutamine amidotransferases class-II JK088_02305 PF04898 Glutamate synthase central domain JK088_02305 PF01645 Conserved region in glutamate synthase JK088_02305 PF01493 GXGXG motif JK088_02310 PF07992 Pyridine nucleotide-disulphide oxidoreductase JK088_02310 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JK088_02315 PF01493 GXGXG motif JK088_02315 PF00310 Glutamine amidotransferases class-II JK088_02315 PF04898 Glutamate synthase central domain JK088_02315 PF01645 Conserved region in glutamate synthase JK088_02320 PF04055 Radical SAM superfamily JK088_02320 PF16199 Radical_SAM C-terminal domain JK088_02325 PF00360 Phytochrome region JK088_02325 PF00990 Diguanylate cyclase, GGDEF domain JK088_02325 PF00563 EAL domain JK088_02325 PF01590 GAF domain JK088_02330 PF18415 Histidine kinase receptor ArcB trans-membrane domain JK088_02330 PF01627 Hpt domain JK088_02330 PF00989 PAS fold JK088_02330 PF00072 Response regulator receiver domain JK088_02330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_02330 PF00512 His Kinase A (phospho-acceptor) domain JK088_02340 PF00486 Transcriptional regulatory protein, C terminal JK088_02340 PF00072 Response regulator receiver domain JK088_02350 PF03737 Aldolase/RraA JK088_02360 PF00742 Homoserine dehydrogenase JK088_02360 PF00696 Amino acid kinase family JK088_02360 PF13840 ACT domain JK088_02360 PF01842 ACT domain JK088_02360 PF03447 Homoserine dehydrogenase, NAD binding domain JK088_02365 PF00288 GHMP kinases N terminal domain JK088_02365 PF08544 GHMP kinases C terminal JK088_02370 PF14821 Threonine synthase N terminus JK088_02370 PF00291 Pyridoxal-phosphate dependent enzyme JK088_02375 PF01228 Glycine radical JK088_02380 PF01261 Xylose isomerase-like TIM barrel JK088_02385 PF03167 Uracil DNA glycosylase superfamily JK088_02400 PF01235 Sodium:alanine symporter family JK088_02405 PF03883 Peroxide stress protein YaaA JK088_02410 PF00270 DEAD/DEAH box helicase JK088_02410 PF00271 Helicase conserved C-terminal domain JK088_02415 PF05175 Methyltransferase small domain JK088_02420 PF05525 Branched-chain amino acid transport protein JK088_02425 PF00258 Flavodoxin JK088_02430 PF02899 Phage integrase, N-terminal SAM-like domain JK088_02430 PF00589 Phage integrase family JK088_02435 PF13098 Thioredoxin-like domain JK088_02435 PF10411 Disulfide bond isomerase protein N-terminus JK088_02440 PF17768 RecJ OB domain JK088_02440 PF02272 DHHA1 domain JK088_02440 PF01368 DHH family JK088_02450 PF01336 OB-fold nucleic acid binding domain JK088_02450 PF00152 tRNA synthetases class II (D, K and N) JK088_02455 PF02954 Bacterial regulatory protein, Fis family JK088_02455 PF00072 Response regulator receiver domain JK088_02455 PF00158 Sigma-54 interaction domain JK088_02465 PF00248 Aldo/keto reductase family JK088_02475 PF02976 DNA mismatch repair enzyme MutH JK088_02480 PF00293 NUDIX domain JK088_02485 PF02896 PEP-utilising enzyme, TIM barrel domain JK088_02485 PF01590 GAF domain JK088_02485 PF05524 PEP-utilising enzyme, N-terminal JK088_02485 PF00391 PEP-utilising enzyme, mobile domain JK088_02490 PF01925 Sulfite exporter TauE/SafE JK088_02495 PF01790 Prolipoprotein diacylglyceryl transferase JK088_02500 PF00303 Thymidylate synthase JK088_02510 PF02690 Na+/Pi-cotransporter JK088_02515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_02515 PF03466 LysR substrate binding domain JK088_02520 PF01022 Bacterial regulatory protein, arsR family JK088_02525 PF01649 Ribosomal protein S20 JK088_02530 PF03023 Lipid II flippase MurJ JK088_02535 PF06574 FAD synthetase JK088_02535 PF01687 Riboflavin kinase JK088_02540 PF06827 Zinc finger found in FPG and IleRS JK088_02540 PF08264 Anticodon-binding domain of tRNA JK088_02540 PF00133 tRNA synthetases class I (I, L, M and V) JK088_02545 PF01252 Signal peptidase (SPase) II JK088_02550 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JK088_02555 PF02401 LytB protein JK088_02560 PF04397 LytTr DNA-binding domain JK088_02560 PF00072 Response regulator receiver domain JK088_02565 PF06580 Histidine kinase JK088_02565 PF07694 5TMR of 5TMR-LYT JK088_02570 PF02554 Carbon starvation protein CstA JK088_02585 PF13580 SIS domain JK088_02590 PF03702 Anhydro-N-acetylmuramic acid kinase JK088_02595 PF00933 Glycosyl hydrolase family 3 N terminal domain JK088_02600 PF00793 DAHP synthetase I family JK088_02605 PF01817 Chorismate mutase type II JK088_02605 PF02153 Prephenate dehydrogenase JK088_02610 PF01551 Peptidase family M23 JK088_02610 PF04225 Opacity-associated protein A LysM-like domain JK088_02615 PF07238 PilZ domain JK088_02620 PF00005 ABC transporter JK088_02620 PF12848 ABC transporter JK088_02625 PF01464 Transglycosylase SLT domain JK088_02625 PF14718 Soluble lytic murein transglycosylase L domain JK088_02630 PF01371 Trp repressor protein JK088_02635 PF01931 Protein of unknown function DUF84 JK088_02640 PF01817 Chorismate mutase type II JK088_02640 PF00800 Prephenate dehydratase JK088_02645 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JK088_02650 PF01464 Transglycosylase SLT domain JK088_02655 PF13525 Outer membrane lipoprotein JK088_02660 PF00849 RNA pseudouridylate synthase JK088_02660 PF01479 S4 domain JK088_02665 PF02578 Multi-copper polyphenol oxidoreductase laccase JK088_02670 PF00004 ATPase family associated with various cellular activities (AAA) JK088_02670 PF07724 AAA domain (Cdc48 subfamily) JK088_02670 PF17871 AAA lid domain JK088_02670 PF02861 Clp amino terminal domain, pathogenicity island component JK088_02670 PF10431 C-terminal, D2-small domain, of ClpB protein JK088_02715 PF03411 Penicillin-insensitive murein endopeptidase JK088_02725 PF00037 4Fe-4S binding domain JK088_02730 PF01136 Peptidase family U32 JK088_02730 PF16325 Peptidase family U32 C-terminal domain JK088_02735 PF04381 Putative exonuclease, RdgC JK088_02740 PF00486 Transcriptional regulatory protein, C terminal JK088_02740 PF00072 Response regulator receiver domain JK088_02745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_02745 PF00512 His Kinase A (phospho-acceptor) domain JK088_02745 PF00989 PAS fold JK088_02745 PF11808 Phosphate regulon sensor protein PhoR JK088_02750 PF12849 PBP superfamily domain JK088_02755 PF02541 Ppx/GppA phosphatase family JK088_02760 PF02503 Polyphosphate kinase middle domain JK088_02760 PF13090 Polyphosphate kinase C-terminal domain 2 JK088_02760 PF17941 Polyphosphate kinase C-terminal domain 1 JK088_02760 PF13089 Polyphosphate kinase N-terminal domain JK088_02765 PF00528 Binding-protein-dependent transport system inner membrane component JK088_02770 PF00528 Binding-protein-dependent transport system inner membrane component JK088_02775 PF00005 ABC transporter JK088_02780 PF01895 PhoU domain JK088_02785 PF03976 Polyphosphate kinase 2 (PPK2) JK088_02790 PF03932 CutC family JK088_02795 PF00578 AhpC/TSA family JK088_02795 PF10417 C-terminal domain of 1-Cys peroxiredoxin JK088_02800 PF03466 LysR substrate binding domain JK088_02800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_02805 PF01274 Malate synthase JK088_02810 PF00463 Isocitrate lyase family JK088_02815 PF00571 CBS domain JK088_02825 PF02547 Queuosine biosynthesis protein JK088_02830 PF01702 Queuine tRNA-ribosyltransferase JK088_02835 PF02699 Preprotein translocase subunit JK088_02840 PF07549 SecD/SecF GG Motif JK088_02840 PF02355 Protein export membrane protein JK088_02840 PF13721 SecD export protein N-terminal TM region JK088_02845 PF07549 SecD/SecF GG Motif JK088_02845 PF02355 Protein export membrane protein JK088_02850 PF00459 Inositol monophosphatase family JK088_02855 PF00588 SpoU rRNA Methylase family JK088_02860 PF02082 Transcriptional regulator JK088_02865 PF00266 Aminotransferase class-V JK088_02870 PF01592 NifU-like N terminal domain JK088_02875 PF01521 Iron-sulphur cluster biosynthesis JK088_02880 PF07743 HSCB C-terminal oligomerisation domain JK088_02880 PF00226 DnaJ domain JK088_02885 PF00012 Hsp70 protein JK088_02890 PF00111 2Fe-2S iron-sulfur cluster binding domain JK088_02895 PF04384 Iron-sulphur cluster assembly JK088_02900 PF12404 Peptidase JK088_02900 PF00883 Cytosol aminopeptidase family, catalytic domain JK088_02905 PF00334 Nucleoside diphosphate kinase JK088_02910 PF04055 Radical SAM superfamily JK088_02915 PF13464 Domain of unknown function (DUF4115) JK088_02920 PF04551 GcpE protein JK088_02925 PF03129 Anticodon binding domain JK088_02925 PF13393 Histidyl-tRNA synthetase JK088_02930 PF09976 Tetratricopeptide repeat-like domain JK088_02935 PF13360 PQQ-like domain JK088_02940 PF01926 50S ribosome-binding GTPase JK088_02940 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JK088_02955 PF02601 Exonuclease VII, large subunit JK088_02955 PF13742 OB-fold nucleic acid binding domain JK088_02960 PF00478 IMP dehydrogenase / GMP reductase domain JK088_02960 PF00571 CBS domain JK088_02965 PF00958 GMP synthase C terminal domain JK088_02965 PF02540 NAD synthase JK088_02965 PF00117 Glutamine amidotransferase class-I JK088_02970 PF03553 Na+/H+ antiporter family JK088_02975 PF00704 Glycosyl hydrolases family 18 JK088_02975 PF06483 Chitinase C JK088_02980 PF01184 GPR1/FUN34/yaaH family JK088_02995 PF01266 FAD dependent oxidoreductase JK088_03000 PF03466 LysR substrate binding domain JK088_03000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_03015 PF07969 Amidohydrolase family JK088_03020 PF01053 Cys/Met metabolism PLP-dependent enzyme JK088_03025 PF00202 Aminotransferase class-III JK088_03045 PF00583 Acetyltransferase (GNAT) family JK088_03045 PF00795 Carbon-nitrogen hydrolase JK088_03050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_03050 PF03466 LysR substrate binding domain JK088_03080 PF04471 Restriction endonuclease JK088_03080 PF14338 Mrr N-terminal domain JK088_03085 PF12161 HsdM N-terminal domain JK088_03085 PF02384 N-6 DNA Methylase JK088_03105 PF18766 SWI2/SNF2 ATPase JK088_03105 PF11867 Domain of unknown function (DUF3387) JK088_03105 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) JK088_03155 PF00589 Phage integrase family JK088_03155 PF13356 Arm DNA-binding domain JK088_03165 PF01668 SmpB protein JK088_03170 PF03364 Polyketide cyclase / dehydrase and lipid transport JK088_03175 PF03658 RnfH family Ubiquitin JK088_03180 PF04355 SmpA / OmlA family JK088_03185 PF02463 RecF/RecN/SMC N terminal domain JK088_03195 PF01513 ATP-NAD kinase JK088_03200 PF01025 GrpE JK088_03205 PF00375 Sodium:dicarboxylate symporter family JK088_03210 PF00012 Hsp70 protein JK088_03215 PF00226 DnaJ domain JK088_03215 PF01556 DnaJ C terminal domain JK088_03215 PF00684 DnaJ central domain JK088_03220 PF00114 Pilin (bacterial filament) JK088_03220 PF07963 Prokaryotic N-terminal methylation motif JK088_03225 PF00114 Pilin (bacterial filament) JK088_03225 PF07963 Prokaryotic N-terminal methylation motif JK088_03245 PF03806 AbgT putative transporter family JK088_03250 PF14437 MafB19-like deaminase JK088_03255 PF00497 Bacterial extracellular solute-binding proteins, family 3 JK088_03255 PF01464 Transglycosylase SLT domain JK088_03260 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal JK088_03260 PF02769 AIR synthase related protein, C-terminal domain JK088_03260 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain JK088_03285 PF07687 Peptidase dimerisation domain JK088_03285 PF01546 Peptidase family M20/M25/M40 JK088_03290 PF00860 Permease family JK088_03295 PF00156 Phosphoribosyl transferase domain JK088_03300 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) JK088_03305 PF07417 Sigma factor-binding transcriptional regulator Crl JK088_03310 PF01472 PUA domain JK088_03310 PF00696 Amino acid kinase family JK088_03315 PF00171 Aldehyde dehydrogenase family JK088_03320 PF03477 ATP cone domain JK088_03325 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JK088_03325 PF01872 RibD C-terminal domain JK088_03330 PF00677 Lumazine binding domain JK088_03335 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JK088_03335 PF00925 GTP cyclohydrolase II JK088_03340 PF00885 6,7-dimethyl-8-ribityllumazine synthase JK088_03345 PF01029 NusB family JK088_03350 PF02769 AIR synthase related protein, C-terminal domain JK088_03350 PF00586 AIR synthase related protein, N-terminal domain JK088_03355 PF04608 Phosphatidylglycerophosphatase A JK088_03360 PF13292 1-deoxy-D-xylulose-5-phosphate synthase JK088_03360 PF02779 Transketolase, pyrimidine binding domain JK088_03360 PF02780 Transketolase, C-terminal domain JK088_03365 PF00348 Polyprenyl synthetase JK088_03370 PF02609 Exonuclease VII small subunit JK088_03375 PF01618 MotA/TolQ/ExbB proton channel family JK088_03380 PF00691 OmpA family JK088_03385 PF02568 Thiamine biosynthesis protein (ThiI) JK088_03385 PF02926 THUMP domain JK088_03390 PF03466 LysR substrate binding domain JK088_03390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_03400 PF04241 Protein of unknown function (DUF423) JK088_03405 PF18125 RlmM ferredoxin-like domain JK088_03405 PF01728 FtsJ-like methyltransferase JK088_03410 PF01223 DNA/RNA non-specific endonuclease JK088_03415 PF01367 5'-3' exonuclease, C-terminal SAM fold JK088_03415 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JK088_03420 PF11892 Domain of unknown function (DUF3412) JK088_03420 PF03641 Possible lysine decarboxylase JK088_03420 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases JK088_03425 PF00990 Diguanylate cyclase, GGDEF domain JK088_03435 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term JK088_03435 PF14489 QueF-like protein JK088_03440 PF07348 Syd protein (SUKH-2) JK088_03445 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) JK088_03450 PF03180 NLPA lipoprotein JK088_03455 PF00528 Binding-protein-dependent transport system inner membrane component JK088_03460 PF09383 NIL domain JK088_03460 PF00005 ABC transporter JK088_03470 PF00356 Bacterial regulatory proteins, lacI family JK088_03475 PF00367 phosphotransferase system, EIIB JK088_03475 PF02378 Phosphotransferase system, EIIC JK088_03480 PF16657 Maltogenic Amylase, C-terminal domain JK088_03480 PF00128 Alpha amylase, catalytic domain JK088_03495 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JK088_03495 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JK088_03500 PF00464 Serine hydroxymethyltransferase JK088_03505 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family JK088_03505 PF04055 Radical SAM superfamily JK088_03510 PF03099 Biotin/lipoate A/B protein ligase family JK088_03515 PF04359 Protein of unknown function (DUF493) JK088_03520 PF00768 D-alanyl-D-alanine carboxypeptidase JK088_03520 PF07943 Penicillin-binding protein 5, C-terminal domain JK088_03525 PF05036 Sporulation related domain JK088_03525 PF03330 Lytic transglycolase JK088_03530 PF01098 Cell cycle protein JK088_03535 PF03717 Penicillin-binding Protein dimerisation domain JK088_03535 PF00905 Penicillin binding protein transpeptidase domain JK088_03540 PF02590 Predicted SPOUT methyltransferase JK088_03550 PF14840 Processivity clamp loader gamma complex DNA pol III C-term JK088_03550 PF06144 DNA polymerase III, delta subunit JK088_03555 PF04390 Lipopolysaccharide-assembly JK088_03565 PF07295 Zinc-ribbon containing domain JK088_03575 PF00571 CBS domain JK088_03575 PF03471 Transporter associated domain JK088_03580 PF02130 Uncharacterized protein family UPF0054 JK088_03585 PF02562 PhoH-like protein JK088_03590 PF01938 TRAM domain JK088_03590 PF04055 Radical SAM superfamily JK088_03590 PF00919 Uncharacterized protein family UPF0004 JK088_03595 PF01494 FAD binding domain JK088_03710 PF06071 Protein of unknown function (DUF933) JK088_03710 PF01926 50S ribosome-binding GTPase JK088_03715 PF01195 Peptidyl-tRNA hydrolase JK088_03720 PF14572 Phosphoribosyl synthetase-associated domain JK088_03720 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JK088_03725 PF08544 GHMP kinases C terminal JK088_03725 PF00288 GHMP kinases N terminal domain JK088_03730 PF03550 Outer membrane lipoprotein LolB JK088_03735 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain JK088_03735 PF01488 Shikimate / quinate 5-dehydrogenase JK088_03735 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain JK088_03740 PF00472 RF-1 domain JK088_03740 PF03462 PCRF domain JK088_03745 PF17827 PrmC N-terminal domain JK088_03745 PF13847 Methyltransferase domain JK088_03750 PF04247 Invasion gene expression up-regulator, SirB JK088_03755 PF13369 Transglutaminase-like superfamily JK088_03760 PF00793 DAHP synthetase I family JK088_03765 PF02872 5'-nucleotidase, C-terminal domain JK088_03765 PF00149 Calcineurin-like phosphoesterase JK088_03770 PF04073 Aminoacyl-tRNA editing domain JK088_03775 PF00849 RNA pseudouridylate synthase JK088_03775 PF01479 S4 domain JK088_03780 PF01713 Smr domain JK088_03800 PF02838 Glycosyl hydrolase family 20, domain 2 JK088_03800 PF00728 Glycosyl hydrolase family 20, catalytic domain JK088_03800 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain JK088_03800 PF03173 Putative carbohydrate binding domain JK088_03815 PF00403 Heavy-metal-associated domain JK088_03820 PF13609 Gram-negative porin JK088_03825 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) JK088_03830 PF00749 tRNA synthetases class I (E and Q), catalytic domain JK088_03835 PF01389 OmpA-like transmembrane domain JK088_03835 PF00691 OmpA family JK088_03880 PF01584 CheW-like domain JK088_03880 PF00072 Response regulator receiver domain JK088_03885 PF03705 CheR methyltransferase, all-alpha domain JK088_03885 PF01739 CheR methyltransferase, SAM binding domain JK088_03890 PF00460 Flagella basal body rod protein JK088_03895 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JK088_03895 PF00460 Flagella basal body rod protein JK088_03900 PF13860 FlgD Ig-like domain JK088_03900 PF03963 Flagellar hook capping protein - N-terminal region JK088_03900 PF13861 FlgD Tudor-like domain JK088_03905 PF00460 Flagella basal body rod protein JK088_03905 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JK088_03905 PF07559 Flagellar basal body protein FlaE JK088_03910 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JK088_03910 PF00460 Flagella basal body rod protein JK088_03915 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JK088_03915 PF00460 Flagella basal body rod protein JK088_03920 PF02107 Flagellar L-ring protein JK088_03925 PF02119 Flagellar P-ring protein JK088_03930 PF10135 Rod binding protein JK088_03930 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JK088_03935 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JK088_03935 PF07196 Flagellin hook IN motif JK088_03940 PF00669 Bacterial flagellin N-terminal helical region JK088_03945 PF00700 Bacterial flagellin C-terminal helical region JK088_03945 PF00669 Bacterial flagellin N-terminal helical region JK088_03945 PF07196 Flagellin hook IN motif JK088_03950 PF00669 Bacterial flagellin N-terminal helical region JK088_03950 PF07196 Flagellin hook IN motif JK088_03950 PF00700 Bacterial flagellin C-terminal helical region JK088_03955 PF00700 Bacterial flagellin C-terminal helical region JK088_03955 PF07196 Flagellin hook IN motif JK088_03955 PF00669 Bacterial flagellin N-terminal helical region JK088_03960 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JK088_03965 PF00391 PEP-utilising enzyme, mobile domain JK088_03965 PF02896 PEP-utilising enzyme, TIM barrel domain JK088_03965 PF05524 PEP-utilising enzyme, N-terminal JK088_03970 PF00381 PTS HPr component phosphorylation site JK088_03975 PF00291 Pyridoxal-phosphate dependent enzyme JK088_03985 PF04354 ZipA, C-terminal FtsZ-binding domain JK088_03990 PF00533 BRCA1 C Terminus (BRCT) domain JK088_03990 PF01653 NAD-dependent DNA ligase adenylation domain JK088_03990 PF03120 NAD-dependent DNA ligase OB-fold domain JK088_03990 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JK088_03990 PF12826 Helix-hairpin-helix motif JK088_03995 PF03573 outer membrane porin, OprD family JK088_04010 PF01145 SPFH domain / Band 7 family JK088_04010 PF16200 C-terminal region of band_7 JK088_04015 PF00085 Thioredoxin JK088_04020 PF00106 short chain dehydrogenase JK088_04025 PF08338 Domain of unknown function (DUF1731) JK088_04025 PF01370 NAD dependent epimerase/dehydratase family JK088_04030 PF07556 Protein of unknown function (DUF1538) JK088_04035 PF07556 Protein of unknown function (DUF1538) JK088_04055 PF12850 Calcineurin-like phosphoesterase superfamily domain JK088_04070 PF17323 Trans-membrane regulatory protein ToxS JK088_04075 PF00486 Transcriptional regulatory protein, C terminal JK088_04080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_04080 PF00183 Hsp90 protein JK088_04085 PF05191 Adenylate kinase, active site lid JK088_04090 PF00762 Ferrochelatase JK088_04095 PF00854 POT family JK088_04100 PF02357 Transcription termination factor nusG JK088_04105 PF00733 Asparagine synthase JK088_04105 PF13537 Glutamine amidotransferase domain JK088_04110 PF00999 Sodium/hydrogen exchanger family JK088_04110 PF02254 TrkA-N domain JK088_04115 PF01047 MarR family JK088_04115 PF00480 ROK family JK088_04120 PF01979 Amidohydrolase family JK088_04125 PF00367 phosphotransferase system, EIIB JK088_04125 PF02378 Phosphotransferase system, EIIC JK088_04130 PF00749 tRNA synthetases class I (E and Q), catalytic domain JK088_04130 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain JK088_04135 PF01475 Ferric uptake regulator family JK088_04140 PF01118 Semialdehyde dehydrogenase, NAD binding domain JK088_04140 PF02774 Semialdehyde dehydrogenase, dimerisation domain JK088_04145 PF00258 Flavodoxin JK088_04155 PF12697 Alpha/beta hydrolase family JK088_04160 PF03925 SeqA protein C-terminal domain JK088_04160 PF17206 SeqA protein N-terminal domain JK088_04165 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JK088_04165 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JK088_04165 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JK088_04165 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JK088_04175 PF01784 NIF3 (NGG1p interacting factor 3) JK088_04180 PF00285 Citrate synthase, C-terminal domain JK088_04185 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JK088_04190 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JK088_04195 PF02910 Fumarate reductase flavoprotein C-term JK088_04195 PF00890 FAD binding domain JK088_04200 PF13085 2Fe-2S iron-sulfur cluster binding domain JK088_04205 PF16078 2-oxoglutarate dehydrogenase N-terminus JK088_04205 PF00676 Dehydrogenase E1 component JK088_04205 PF16870 2-oxoglutarate dehydrogenase C-terminal JK088_04205 PF02779 Transketolase, pyrimidine binding domain JK088_04210 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JK088_04210 PF00364 Biotin-requiring enzyme JK088_04210 PF02817 e3 binding domain JK088_04215 PF00549 CoA-ligase JK088_04215 PF08442 ATP-grasp domain JK088_04220 PF02629 CoA binding domain JK088_04220 PF00549 CoA-ligase JK088_04225 PF00950 ABC 3 transport family JK088_04230 PF00005 ABC transporter JK088_04235 PF01297 Zinc-uptake complex component A periplasmic JK088_04240 PF02311 AraC-like ligand binding domain JK088_04240 PF12833 Helix-turn-helix domain JK088_04245 PF04023 FeoA domain JK088_04250 PF07670 Nucleoside recognition JK088_04250 PF17910 FeoB cytosolic helical domain JK088_04250 PF07664 Ferrous iron transport protein B C terminus JK088_04250 PF02421 Ferrous iron transport protein B JK088_04265 PF03485 Arginyl tRNA synthetase N terminal domain JK088_04265 PF05746 DALR anticodon binding domain JK088_04265 PF00750 tRNA synthetases class I (R) JK088_04270 PF06185 YecM protein JK088_04280 PF00089 Trypsin JK088_04285 PF01842 ACT domain JK088_04285 PF00551 Formyl transferase JK088_04290 PF13307 Helicase C-terminal domain JK088_04290 PF04851 Type III restriction enzyme, res subunit JK088_04295 PF00814 Glycoprotease family JK088_04310 PF00561 alpha/beta hydrolase fold JK088_04315 PF00501 AMP-binding enzyme JK088_04315 PF13193 AMP-binding enzyme C-terminal domain JK088_04320 PF01612 3'-5' exonuclease JK088_04320 PF00570 HRDC domain JK088_04325 PF03776 Septum formation topological specificity factor MinE JK088_04330 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JK088_04335 PF03775 Septum formation inhibitor MinC, C-terminal domain JK088_04335 PF05209 Septum formation inhibitor MinC, N-terminal domain JK088_04340 PF05166 YcgL domain JK088_04345 PF13406 Transglycosylase SLT domain JK088_04350 PF03466 LysR substrate binding domain JK088_04350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_04355 PF01773 Na+ dependent nucleoside transporter N-terminus JK088_04355 PF07662 Na+ dependent nucleoside transporter C-terminus JK088_04355 PF07670 Nucleoside recognition JK088_04360 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JK088_04360 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JK088_04375 PF02801 Beta-ketoacyl synthase, C-terminal domain JK088_04375 PF00109 Beta-ketoacyl synthase, N-terminal domain JK088_04385 PF07977 FabA-like domain JK088_04390 PF02801 Beta-ketoacyl synthase, C-terminal domain JK088_04390 PF00109 Beta-ketoacyl synthase, N-terminal domain JK088_04415 PF00221 Aromatic amino acid lyase JK088_04420 PF00535 Glycosyl transferase family 2 JK088_04425 PF07977 FabA-like domain JK088_04440 PF00550 Phosphopantetheine attachment site JK088_04445 PF00550 Phosphopantetheine attachment site JK088_04470 PF04820 Tryptophan halogenase JK088_04480 PF00571 CBS domain JK088_04480 PF03471 Transporter associated domain JK088_04480 PF01595 Cyclin M transmembrane N-terminal domain JK088_04485 PF00270 DEAD/DEAH box helicase JK088_04485 PF00271 Helicase conserved C-terminal domain JK088_04490 PF02254 TrkA-N domain JK088_04490 PF02080 TrkA-C domain JK088_04495 PF02386 Cation transport protein JK088_04510 PF02696 Uncharacterized ACR, YdiU/UPF0061 family JK088_04515 PF03480 Bacterial extracellular solute-binding protein, family 7 JK088_04520 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component JK088_04525 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JK088_04535 PF00072 Response regulator receiver domain JK088_04535 PF00158 Sigma-54 interaction domain JK088_04535 PF02954 Bacterial regulatory protein, Fis family JK088_04540 PF02743 Cache domain JK088_04540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_04540 PF00512 His Kinase A (phospho-acceptor) domain JK088_04550 PF05697 Bacterial trigger factor protein (TF) JK088_04550 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JK088_04550 PF05698 Bacterial trigger factor protein (TF) C-terminus JK088_04555 PF00574 Clp protease JK088_04560 PF07724 AAA domain (Cdc48 subfamily) JK088_04560 PF10431 C-terminal, D2-small domain, of ClpB protein JK088_04560 PF06689 ClpX C4-type zinc finger JK088_04565 PF00004 ATPase family associated with various cellular activities (AAA) JK088_04565 PF05362 Lon protease (S16) C-terminal proteolytic domain JK088_04565 PF02190 ATP-dependent protease La (LON) substrate-binding domain JK088_04570 PF00216 Bacterial DNA-binding protein JK088_04575 PF13145 PPIC-type PPIASE domain JK088_04595 PF01966 HD domain JK088_04595 PF13286 Phosphohydrolase-associated domain JK088_04605 PF00155 Aminotransferase class I and II JK088_04610 PF00425 chorismate binding enzyme JK088_04615 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JK088_04615 PF16582 Middle domain of thiamine pyrophosphate JK088_04615 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JK088_04620 PF12697 Alpha/beta hydrolase family JK088_04625 PF00378 Enoyl-CoA hydratase/isomerase JK088_04630 PF13378 Enolase C-terminal domain-like JK088_04635 PF00501 AMP-binding enzyme JK088_04635 PF13193 AMP-binding enzyme C-terminal domain JK088_04645 PF03601 Conserved hypothetical protein 698 JK088_04650 PF07690 Major Facilitator Superfamily JK088_04695 PF13533 Biotin-lipoyl like JK088_04700 PF00873 AcrB/AcrD/AcrF family JK088_04720 PF00291 Pyridoxal-phosphate dependent enzyme JK088_04725 PF01037 Lrp/AsnC ligand binding domain JK088_04725 PF13404 AsnC-type helix-turn-helix domain JK088_04740 PF09619 Type III secretion system lipoprotein chaperone (YscW) JK088_04745 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JK088_04755 PF17152 Periplasmic sensor domain JK088_04755 PF00990 Diguanylate cyclase, GGDEF domain JK088_04765 PF00588 SpoU rRNA Methylase family JK088_04765 PF08032 RNA 2'-O ribose methyltransferase substrate binding JK088_04770 PF00037 4Fe-4S binding domain JK088_04770 PF11953 Domain of unknown function (DUF3470) JK088_04780 PF00478 IMP dehydrogenase / GMP reductase domain JK088_04780 PF00571 CBS domain JK088_04785 PF00403 Heavy-metal-associated domain JK088_04790 PF01048 Phosphorylase superfamily JK088_04800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JK088_04800 PF00672 HAMP domain JK088_04805 PF01230 HIT domain JK088_04820 PF08139 Prokaryotic membrane lipoprotein lipid attachment site JK088_04820 PF13036 Peptidoglycan-synthase activator LpoB JK088_04830 PF05728 Uncharacterised protein family (UPF0227) JK088_04835 PF07992 Pyridine nucleotide-disulphide oxidoreductase JK088_04850 PF00271 Helicase conserved C-terminal domain JK088_04850 PF00270 DEAD/DEAH box helicase JK088_04850 PF03461 TRCF domain JK088_04850 PF02559 CarD-like/TRCF domain JK088_04850 PF17757 UvrB interaction domain JK088_04860 PF02687 FtsX-like permease family JK088_04860 PF12704 MacB-like periplasmic core domain JK088_04865 PF00005 ABC transporter JK088_04870 PF02687 FtsX-like permease family JK088_04870 PF12704 MacB-like periplasmic core domain JK088_04880 PF03772 Competence protein JK088_04880 PF13567 Domain of unknown function (DUF4131) JK088_04880 PF00753 Metallo-beta-lactamase superfamily JK088_04885 PF00005 ABC transporter JK088_04885 PF00664 ABC transporter transmembrane region JK088_04890 PF02606 Tetraacyldisaccharide-1-P 4'-kinase JK088_04895 PF03966 Trm112p-like protein JK088_04900 PF02348 Cytidylyltransferase JK088_04905 PF04293 SpoVR like protein JK088_04910 PF04285 Protein of unknown function (DUF444) JK088_04915 PF06798 PrkA serine protein kinase C-terminal domain JK088_04915 PF08298 PrkA AAA domain JK088_04920 PF03887 YfbU domain JK088_04930 PF04055 Radical SAM superfamily JK088_04940 PF02901 Pyruvate formate lyase-like JK088_04940 PF01228 Glycine radical JK088_04955 PF00005 ABC transporter JK088_04960 PF00497 Bacterial extracellular solute-binding proteins, family 3 JK088_04965 PF00528 Binding-protein-dependent transport system inner membrane component JK088_04970 PF00528 Binding-protein-dependent transport system inner membrane component JK088_04980 PF03372 Endonuclease/Exonuclease/phosphatase family JK088_04985 PF10689 Protein of unknown function (DUF2496) JK088_04990 PF07445 Primosomal replication protein priC JK088_05000 PF06733 DEAD_2 JK088_05000 PF13307 Helicase C-terminal domain JK088_05010 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) JK088_05015 PF00849 RNA pseudouridylate synthase JK088_05020 PF03971 Monomeric isocitrate dehydrogenase JK088_05025 PF00313 'Cold-shock' DNA-binding domain JK088_05030 PF02617 ATP-dependent Clp protease adaptor protein ClpS JK088_05035 PF10431 C-terminal, D2-small domain, of ClpB protein JK088_05035 PF00004 ATPase family associated with various cellular activities (AAA) JK088_05035 PF17871 AAA lid domain JK088_05035 PF07724 AAA domain (Cdc48 subfamily) JK088_05035 PF02861 Clp amino terminal domain, pathogenicity island component JK088_05045 PF01176 Translation initiation factor 1A / IF-1 JK088_05050 PF04376 Arginine-tRNA-protein transferase, N terminus JK088_05050 PF04377 Arginine-tRNA-protein transferase, C terminus JK088_05055 PF03588 Leucyl/phenylalanyl-tRNA protein transferase JK088_05065 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JK088_05070 PF10692 Protein of unknown function (DUF2498) JK088_05075 PF01751 Toprim domain JK088_05075 PF01396 Topoisomerase DNA binding C4 zinc finger JK088_05075 PF01131 DNA topoisomerase JK088_05075 PF08272 Topoisomerase I zinc-ribbon-like JK088_05080 PF00483 Nucleotidyl transferase JK088_05085 PF00534 Glycosyl transferases group 1 JK088_05085 PF08323 Starch synthase catalytic domain JK088_05105 PF04993 TfoX N-terminal domain JK088_05105 PF04994 TfoX C-terminal domain JK088_05110 PF00356 Bacterial regulatory proteins, lacI family JK088_05115 PF02613 Nitrate reductase delta subunit JK088_05120 PF00486 Transcriptional regulatory protein, C terminal JK088_05120 PF00072 Response regulator receiver domain JK088_05125 PF02698 DUF218 domain JK088_05130 PF13847 Methyltransferase domain JK088_05135 PF17192 MukF middle domain JK088_05135 PF03882 MukF winged-helix domain JK088_05135 PF17193 MukF C-terminal domain JK088_05140 PF04288 MukE-like family JK088_05145 PF16330 MukB hinge domain JK088_05145 PF04310 MukB N-terminal JK088_05155 PF08443 RimK-like ATP-grasp domain JK088_05155 PF18030 RimK PreATP-grasp domain JK088_05165 PF08443 RimK-like ATP-grasp domain JK088_05165 PF18030 RimK PreATP-grasp domain JK088_05170 PF08003 Protein of unknown function (DUF1698) JK088_05175 PF13649 Methyltransferase domain JK088_05180 PF01904 Protein of unknown function DUF72 JK088_05185 PF02938 GAD domain JK088_05185 PF00152 tRNA synthetases class II (D, K and N) JK088_05185 PF01336 OB-fold nucleic acid binding domain JK088_05190 PF02075 Crossover junction endodeoxyribonuclease RuvC JK088_05195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JK088_05195 PF00672 HAMP domain JK088_05195 PF02203 Tar ligand binding domain homologue JK088_05200 PF07499 RuvA, C-terminal domain JK088_05200 PF01330 RuvA N terminal domain JK088_05205 PF17864 RuvB AAA lid domain JK088_05205 PF05491 RuvB C-terminal winged helix domain JK088_05205 PF05496 Holliday junction DNA helicase RuvB P-loop domain JK088_05210 PF01654 Cytochrome bd terminal oxidase subunit I JK088_05215 PF02322 Cytochrome bd terminal oxidase subunit II JK088_05220 PF08173 Membrane bound YbgT-like protein JK088_05230 PF03061 Thioesterase superfamily JK088_05235 PF01618 MotA/TolQ/ExbB proton channel family JK088_05240 PF02472 Biopolymer transport protein ExbD/TolR JK088_05250 PF07676 WD40-like Beta Propeller Repeat JK088_05250 PF04052 TolB amino-terminal domain JK088_05255 PF00691 OmpA family JK088_05260 PF16331 TolA binding protein trimerisation JK088_05260 PF13174 Tetratricopeptide repeat JK088_05265 PF02445 Quinolinate synthetase A protein JK088_05275 PF03994 Domain of Unknown Function (DUF350) JK088_05285 PF03738 Glutathionylspermidine synthase preATP-grasp JK088_05295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_05295 PF00512 His Kinase A (phospho-acceptor) domain JK088_05295 PF09308 LuxQ, periplasmic JK088_05295 PF00072 Response regulator receiver domain JK088_05300 PF06610 L-alanine exporter JK088_05335 PF00672 HAMP domain JK088_05335 PF02743 Cache domain JK088_05335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JK088_05340 PF00529 HlyD membrane-fusion protein of T1SS JK088_05340 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JK088_05345 PF00873 AcrB/AcrD/AcrF family JK088_05360 PF00579 tRNA synthetases class I (W and Y) JK088_05370 PF03372 Endonuclease/Exonuclease/phosphatase family JK088_05375 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) JK088_05385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_05385 PF03466 LysR substrate binding domain JK088_05395 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JK088_05395 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JK088_05400 PF01037 Lrp/AsnC ligand binding domain JK088_05405 PF17854 FtsK alpha domain JK088_05405 PF09397 Ftsk gamma domain JK088_05405 PF01580 FtsK/SpoIIIE family JK088_05405 PF13491 4TM region of DNA translocase FtsK/SpoIIIE JK088_05410 PF03548 Outer membrane lipoprotein carrier protein LolA JK088_05415 PF12002 MgsA AAA+ ATPase C terminal JK088_05415 PF16193 AAA C-terminal domain JK088_05415 PF00004 ATPase family associated with various cellular activities (AAA) JK088_05420 PF02403 Seryl-tRNA synthetase N-terminal domain JK088_05420 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JK088_05435 PF01258 Prokaryotic dksA/traR C4-type zinc finger JK088_05440 PF00202 Aminotransferase class-III JK088_05445 PF06968 Biotin and Thiamin Synthesis associated domain JK088_05445 PF04055 Radical SAM superfamily JK088_05450 PF00155 Aminotransferase class I and II JK088_05455 PF08241 Methyltransferase domain JK088_05470 PF01435 Peptidase family M48 JK088_05480 PF00106 short chain dehydrogenase JK088_05515 PF00206 Lyase JK088_05515 PF08328 Adenylosuccinate lyase C-terminal JK088_05520 PF04356 Protein of unknown function (DUF489) JK088_05535 PF00294 pfkB family carbohydrate kinase JK088_05540 PF00816 H-NS histone family JK088_05545 PF03553 Na+/H+ antiporter family JK088_05555 PF02954 Bacterial regulatory protein, Fis family JK088_05555 PF00072 Response regulator receiver domain JK088_05555 PF00158 Sigma-54 interaction domain JK088_05560 PF01634 ATP phosphoribosyltransferase JK088_05560 PF08029 HisG, C-terminal domain JK088_05565 PF00815 Histidinol dehydrogenase JK088_05570 PF00155 Aminotransferase class I and II JK088_05575 PF08645 Polynucleotide kinase 3 phosphatase JK088_05575 PF00475 Imidazoleglycerol-phosphate dehydratase JK088_05580 PF00117 Glutamine amidotransferase class-I JK088_05585 PF00977 Histidine biosynthesis protein JK088_05590 PF00977 Histidine biosynthesis protein JK088_05595 PF01502 Phosphoribosyl-AMP cyclohydrolase JK088_05595 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase JK088_05600 PF02810 SEC-C motif JK088_05605 PF00563 EAL domain JK088_05605 PF08668 HDOD domain JK088_05610 PF00149 Calcineurin-like phosphoesterase JK088_05615 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JK088_05620 PF09190 DALR domain JK088_05620 PF01406 tRNA synthetases class I (C) catalytic domain JK088_05625 PF00265 Thymidine kinase JK088_05630 PF02698 DUF218 domain JK088_05655 PF01226 Formate/nitrite transporter JK088_05665 PF03649 Uncharacterised protein family (UPF0014) JK088_05670 PF06796 Periplasmic nitrate reductase protein NapE JK088_05675 PF03264 NapC/NirT cytochrome c family, N-terminal region JK088_05680 PF00384 Molybdopterin oxidoreductase JK088_05680 PF18364 Molybdopterin oxidoreductase N-terminal domain JK088_05680 PF01568 Molydopterin dinucleotide binding domain JK088_05685 PF16874 Glycosyl hydrolase family 36 C-terminal domain JK088_05685 PF16875 Glycosyl hydrolase family 36 N-terminal domain JK088_05695 PF01368 DHH family JK088_05695 PF02833 DHHA2 domain JK088_05705 PF00005 ABC transporter JK088_05710 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JK088_05710 PF00005 ABC transporter JK088_05715 PF00528 Binding-protein-dependent transport system inner membrane component JK088_05715 PF12911 N-terminal TM domain of oligopeptide transport permease C JK088_05720 PF00528 Binding-protein-dependent transport system inner membrane component JK088_05725 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JK088_05730 PF02954 Bacterial regulatory protein, Fis family JK088_05730 PF00158 Sigma-54 interaction domain JK088_05735 PF04012 PspA/IM30 family JK088_05740 PF06667 Phage shock protein B JK088_05745 PF04024 PspC domain JK088_05750 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JK088_05755 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JK088_05760 PF00873 AcrB/AcrD/AcrF family JK088_05765 PF03352 Methyladenine glycosylase JK088_05770 PF03280 Proteobacterial lipase chaperone protein JK088_05775 PF00561 alpha/beta hydrolase fold JK088_05780 PF01053 Cys/Met metabolism PLP-dependent enzyme JK088_05785 PF13091 PLD-like domain JK088_05785 PF13396 Phospholipase_D-nuclease N-terminal JK088_05790 PF00209 Sodium:neurotransmitter symporter family JK088_05795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JK088_05795 PF00672 HAMP domain JK088_05795 PF12729 Four helix bundle sensory module for signal transduction JK088_05800 PF00849 RNA pseudouridylate synthase JK088_05810 PF00970 Oxidoreductase FAD-binding domain JK088_05810 PF00175 Oxidoreductase NAD-binding domain JK088_05810 PF00111 2Fe-2S iron-sulfur cluster binding domain JK088_05815 PF03063 Prismane/CO dehydrogenase family JK088_05820 PF01590 GAF domain JK088_05820 PF00158 Sigma-54 interaction domain JK088_05830 PF01066 CDP-alcohol phosphatidyltransferase JK088_05835 PF00005 ABC transporter JK088_05840 PF00528 Binding-protein-dependent transport system inner membrane component JK088_05845 PF13416 Bacterial extracellular solute-binding protein JK088_05850 PF09335 SNARE associated Golgi protein JK088_05860 PF07992 Pyridine nucleotide-disulphide oxidoreductase JK088_05860 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JK088_05870 PF00512 His Kinase A (phospho-acceptor) domain JK088_05870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_05875 PF00072 Response regulator receiver domain JK088_05875 PF00196 Bacterial regulatory proteins, luxR family JK088_05885 PF06945 Protein of unknown function (DUF1289) JK088_05895 PF00149 Calcineurin-like phosphoesterase JK088_05895 PF02872 5'-nucleotidase, C-terminal domain JK088_05910 PF01386 Ribosomal L25p family JK088_05915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_05920 PF00486 Transcriptional regulatory protein, C terminal JK088_05920 PF00072 Response regulator receiver domain JK088_05930 PF00271 Helicase conserved C-terminal domain JK088_05930 PF04851 Type III restriction enzyme, res subunit JK088_05935 PF01479 S4 domain JK088_05935 PF00849 RNA pseudouridylate synthase JK088_05940 PF07690 Major Facilitator Superfamily JK088_05955 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) JK088_05970 PF03264 NapC/NirT cytochrome c family, N-terminal region JK088_05975 PF11066 Protein of unknown function (DUF2867) JK088_05975 PF13460 NAD(P)H-binding JK088_05980 PF01554 MatE JK088_05985 PF00005 ABC transporter JK088_06000 PF06965 Na+/H+ antiporter 1 JK088_06005 PF00440 Bacterial regulatory proteins, tetR family JK088_06005 PF16295 Tetracyclin repressor-like, C-terminal domain JK088_06010 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JK088_06010 PF02770 Acyl-CoA dehydrogenase, middle domain JK088_06010 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JK088_06010 PF09317 Domain of unknown function (DUF1974) JK088_06015 PF07055 Enoyl reductase FAD binding domain JK088_06015 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase JK088_06015 PF12241 Trans-2-enoyl-CoA reductase catalytic region JK088_06020 PF06826 Predicted Permease Membrane Region JK088_06020 PF02080 TrkA-C domain JK088_06025 PF00462 Glutaredoxin JK088_06030 PF00465 Iron-containing alcohol dehydrogenase JK088_06035 PF01418 Helix-turn-helix domain, rpiR family JK088_06035 PF01380 SIS domain JK088_06040 PF00282 Pyridoxal-dependent decarboxylase conserved domain JK088_06050 PF03956 Lysine exporter LysO JK088_06060 PF04994 TfoX C-terminal domain JK088_06060 PF04993 TfoX N-terminal domain JK088_06075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_06075 PF00497 Bacterial extracellular solute-binding proteins, family 3 JK088_06075 PF00512 His Kinase A (phospho-acceptor) domain JK088_06085 PF00266 Aminotransferase class-V JK088_06090 PF00291 Pyridoxal-phosphate dependent enzyme JK088_06095 PF00664 ABC transporter transmembrane region JK088_06095 PF00005 ABC transporter JK088_06100 PF00005 ABC transporter JK088_06100 PF00664 ABC transporter transmembrane region JK088_06105 PF07992 Pyridine nucleotide-disulphide oxidoreductase JK088_06115 PF00266 Aminotransferase class-V JK088_06125 PF00072 Response regulator receiver domain JK088_06125 PF00990 Diguanylate cyclase, GGDEF domain JK088_06130 PF00939 Sodium:sulfate symporter transmembrane region JK088_06135 PF02698 DUF218 domain JK088_06140 PF03949 Malic enzyme, NAD binding domain JK088_06140 PF00390 Malic enzyme, N-terminal domain JK088_06145 PF08482 ATP-dependent helicase C-terminal JK088_06145 PF00270 DEAD/DEAH box helicase JK088_06145 PF04408 Helicase associated domain (HA2) JK088_06145 PF00271 Helicase conserved C-terminal domain JK088_06150 PF02253 Phospholipase A1 JK088_06160 PF09423 PhoD-like phosphatase JK088_06160 PF16655 PhoD-like phosphatase, N-terminal domain JK088_06165 PF01259 SAICAR synthetase JK088_06185 PF00691 OmpA family JK088_06185 PF05736 OprF membrane domain JK088_06200 PF02913 FAD linked oxidases, C-terminal domain JK088_06200 PF01565 FAD binding domain JK088_06200 PF13183 4Fe-4S dicluster domain JK088_06205 PF04191 Phospholipid methyltransferase JK088_06215 PF00221 Aromatic amino acid lyase JK088_06220 PF01175 Urocanase Rossmann-like domain JK088_06220 PF17392 Urocanase C-terminal domain JK088_06220 PF17391 Urocanase N-terminal domain JK088_06225 PF00491 Arginase family JK088_06230 PF01979 Amidohydrolase family JK088_06235 PF07702 UTRA domain JK088_06235 PF00392 Bacterial regulatory proteins, gntR family JK088_06250 PF02824 TGS domain JK088_06250 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JK088_06250 PF03129 Anticodon binding domain JK088_06250 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JK088_06255 PF05198 Translation initiation factor IF-3, N-terminal domain JK088_06255 PF00707 Translation initiation factor IF-3, C-terminal domain JK088_06260 PF01632 Ribosomal protein L35 JK088_06265 PF00453 Ribosomal protein L20 JK088_06270 PF01906 Putative heavy-metal-binding JK088_06300 PF17158 Membrane-associated sensor, integral membrane domain JK088_06300 PF00990 Diguanylate cyclase, GGDEF domain JK088_06305 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JK088_06305 PF01409 tRNA synthetases class II core domain (F) JK088_06310 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JK088_06310 PF03147 Ferredoxin-fold anticodon binding domain JK088_06310 PF03484 tRNA synthetase B5 domain JK088_06310 PF03483 B3/4 domain JK088_06310 PF01588 Putative tRNA binding domain JK088_06320 PF00216 Bacterial DNA-binding protein JK088_06330 PF05724 Thiopurine S-methyltransferase (TPMT) JK088_06335 PF02222 ATP-grasp domain JK088_06340 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region JK088_06340 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JK088_06345 PF04172 LrgB-like family JK088_06350 PF03788 LrgA family JK088_06355 PF00929 Exonuclease JK088_06355 PF08411 Exonuclease C-terminal JK088_06360 PF00375 Sodium:dicarboxylate symporter family JK088_06365 PF13460 NAD(P)H-binding JK088_06370 PF02277 Phosphoribosyltransferase JK088_06375 PF02654 Cobalamin-5-phosphate synthase JK088_06380 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase JK088_06395 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family JK088_06400 PF01032 FecCD transport family JK088_06405 PF00005 ABC transporter JK088_06425 PF03466 LysR substrate binding domain JK088_06425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_06445 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase JK088_06450 PF16363 GDP-mannose 4,6 dehydratase JK088_06455 PF04991 LicD family JK088_06460 PF01863 Protein of unknown function DUF45 JK088_06465 PF05971 RNA methyltransferase JK088_06485 PF00392 Bacterial regulatory proteins, gntR family JK088_06490 PF00171 Aldehyde dehydrogenase family JK088_06495 PF05544 Proline racemase JK088_06510 PF02423 Ornithine cyclodeaminase/mu-crystallin family JK088_06515 PF00701 Dihydrodipicolinate synthetase family JK088_06520 PF00005 ABC transporter JK088_06520 PF08402 TOBE domain JK088_06525 PF00528 Binding-protein-dependent transport system inner membrane component JK088_06530 PF00528 Binding-protein-dependent transport system inner membrane component JK088_06540 PF01752 Collagenase JK088_06540 PF08453 Peptidase family M9 N-terminal JK088_06550 PF00005 ABC transporter JK088_06550 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JK088_06555 PF00005 ABC transporter JK088_06555 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JK088_06560 PF00528 Binding-protein-dependent transport system inner membrane component JK088_06560 PF12911 N-terminal TM domain of oligopeptide transport permease C JK088_06565 PF00528 Binding-protein-dependent transport system inner membrane component JK088_06570 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JK088_06575 PF07687 Peptidase dimerisation domain JK088_06575 PF01546 Peptidase family M20/M25/M40 JK088_06580 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JK088_06585 PF04209 homogentisate 1,2-dioxygenase JK088_06595 PF14497 Glutathione S-transferase, C-terminal domain JK088_06595 PF02798 Glutathione S-transferase, N-terminal domain JK088_06640 PF13533 Biotin-lipoyl like JK088_06655 PF08543 Phosphomethylpyrimidine kinase JK088_06660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_06660 PF03466 LysR substrate binding domain JK088_06680 PF00300 Histidine phosphatase superfamily (branch 1) JK088_06700 PF00512 His Kinase A (phospho-acceptor) domain JK088_06700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_06700 PF00497 Bacterial extracellular solute-binding proteins, family 3 JK088_06705 PF00072 Response regulator receiver domain JK088_06705 PF00158 Sigma-54 interaction domain JK088_06705 PF02954 Bacterial regulatory protein, Fis family JK088_06710 PF00563 EAL domain JK088_06710 PF00990 Diguanylate cyclase, GGDEF domain JK088_06710 PF03707 Bacterial signalling protein N terminal repeat JK088_06715 PF11871 Domain of unknown function (DUF3391) JK088_06715 PF01966 HD domain JK088_06720 PF01810 LysE type translocator JK088_06725 PF11230 Protein of unknown function (DUF3029) JK088_06730 PF04055 Radical SAM superfamily JK088_06740 PF03741 Integral membrane protein TerC family JK088_06745 PF01476 LysM domain JK088_06745 PF08525 Opacity-associated protein A N-terminal motif JK088_06745 PF01551 Peptidase family M23 JK088_06770 PF00158 Sigma-54 interaction domain JK088_06770 PF02954 Bacterial regulatory protein, Fis family JK088_06770 PF00072 Response regulator receiver domain JK088_06775 PF00004 ATPase family associated with various cellular activities (AAA) JK088_06775 PF10431 C-terminal, D2-small domain, of ClpB protein JK088_06775 PF07724 AAA domain (Cdc48 subfamily) JK088_06775 PF17871 AAA lid domain JK088_06780 PF05638 Type VI secretion system effector, Hcp JK088_06785 PF04717 Type VI secretion system, phage-baseplate injector JK088_06810 PF00069 Protein kinase domain JK088_06825 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath JK088_06835 PF05947 Type VI secretion system, TssF JK088_06845 PF01037 Lrp/AsnC ligand binding domain JK088_06875 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE JK088_06930 PF01966 HD domain JK088_06935 PF00465 Iron-containing alcohol dehydrogenase JK088_06940 PF03222 Tryptophan/tyrosine permease family JK088_06960 PF00005 ABC transporter JK088_06960 PF00664 ABC transporter transmembrane region JK088_06965 PF00664 ABC transporter transmembrane region JK088_06965 PF00005 ABC transporter JK088_06990 PF00012 Hsp70 protein JK088_06995 PF00012 Hsp70 protein JK088_07005 PF17151 Periplasmic sensor domain JK088_07005 PF00990 Diguanylate cyclase, GGDEF domain JK088_07035 PF01568 Molydopterin dinucleotide binding domain JK088_07035 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JK088_07035 PF00384 Molybdopterin oxidoreductase JK088_07040 PF12800 4Fe-4S binding domain JK088_07040 PF13247 4Fe-4S dicluster domain JK088_07045 PF04976 DMSO reductase anchor subunit (DmsC) JK088_07050 PF02613 Nitrate reductase delta subunit JK088_07060 PF02525 Flavodoxin-like fold JK088_07065 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold JK088_07065 PF00270 DEAD/DEAH box helicase JK088_07065 PF11898 Domain of unknown function (DUF3418) JK088_07065 PF04408 Helicase associated domain (HA2) JK088_07065 PF00271 Helicase conserved C-terminal domain JK088_07080 PF02028 BCCT, betaine/carnitine/choline family transporter JK088_07090 PF02397 Bacterial sugar transferase JK088_07095 PF00535 Glycosyl transferase family 2 JK088_07100 PF13439 Glycosyltransferase Family 4 JK088_07100 PF00534 Glycosyl transferases group 1 JK088_07130 PF13439 Glycosyltransferase Family 4 JK088_07130 PF00534 Glycosyl transferases group 1 JK088_07135 PF13439 Glycosyltransferase Family 4 JK088_07135 PF00534 Glycosyl transferases group 1 JK088_07140 PF00158 Sigma-54 interaction domain JK088_07140 PF00072 Response regulator receiver domain JK088_07140 PF02954 Bacterial regulatory protein, Fis family JK088_07155 PF02563 Polysaccharide biosynthesis/export protein JK088_07155 PF10531 SLBB domain JK088_07165 PF01740 STAS domain JK088_07170 PF01068 ATP dependent DNA ligase domain JK088_07170 PF14743 DNA ligase OB-like domain JK088_07180 PF01554 MatE JK088_07185 PF00677 Lumazine binding domain JK088_07195 PF03881 Fructosamine kinase JK088_07200 PF01339 CheB methylesterase JK088_07200 PF00072 Response regulator receiver domain JK088_07205 PF00990 Diguanylate cyclase, GGDEF domain JK088_07205 PF05230 MASE2 domain JK088_07215 PF00877 NlpC/P60 family JK088_07220 PF00672 HAMP domain JK088_07220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JK088_07220 PF17202 Single cache domain 3 JK088_07255 PF03942 DTW domain JK088_07260 PF00480 ROK family JK088_07270 PF00994 Probable molybdopterin binding domain JK088_07270 PF03454 MoeA C-terminal region (domain IV) JK088_07270 PF03453 MoeA N-terminal region (domain I and II) JK088_07275 PF12804 MobA-like NTP transferase domain JK088_07280 PF00005 ABC transporter JK088_07280 PF08402 TOBE domain JK088_07285 PF00528 Binding-protein-dependent transport system inner membrane component JK088_07290 PF12849 PBP superfamily domain JK088_07295 PF00158 Sigma-54 interaction domain JK088_07295 PF00072 Response regulator receiver domain JK088_07295 PF02954 Bacterial regulatory protein, Fis family JK088_07300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_07300 PF00512 His Kinase A (phospho-acceptor) domain JK088_07305 PF00005 ABC transporter JK088_07305 PF12848 ABC transporter JK088_07310 PF02634 FdhD/NarQ family JK088_07330 PF02613 Nitrate reductase delta subunit JK088_07340 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JK088_07340 PF01568 Molydopterin dinucleotide binding domain JK088_07340 PF00384 Molybdopterin oxidoreductase JK088_07345 PF13247 4Fe-4S dicluster domain JK088_07360 PF05593 RHS Repeat JK088_07360 PF03527 RHS protein JK088_07370 PF00909 Ammonium Transporter Family JK088_07380 PF02146 Sir2 family JK088_07385 PF13416 Bacterial extracellular solute-binding protein JK088_07390 PF13416 Bacterial extracellular solute-binding protein JK088_07395 PF00528 Binding-protein-dependent transport system inner membrane component JK088_07400 PF00528 Binding-protein-dependent transport system inner membrane component JK088_07405 PF08402 TOBE domain JK088_07405 PF00005 ABC transporter JK088_07425 PF01171 PP-loop family JK088_07430 PF00582 Universal stress protein family JK088_07435 PF00027 Cyclic nucleotide-binding domain JK088_07435 PF13545 Crp-like helix-turn-helix domain JK088_07450 PF00403 Heavy-metal-associated domain JK088_07460 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP JK088_07460 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JK088_07475 PF00115 Cytochrome C and Quinol oxidase polypeptide I JK088_07490 PF09308 LuxQ, periplasmic JK088_07490 PF00512 His Kinase A (phospho-acceptor) domain JK088_07490 PF00072 Response regulator receiver domain JK088_07490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_07575 PF06303 MatP N-terminal domain JK088_07575 PF17414 MatP C-terminal ribbon-helix-helix domain JK088_07580 PF13654 AAA domain JK088_07580 PF05362 Lon protease (S16) C-terminal proteolytic domain JK088_07585 PF07977 FabA-like domain JK088_07590 PF04957 Ribosome modulation factor JK088_07600 PF16326 ABC transporter C-terminal domain JK088_07600 PF00005 ABC transporter JK088_07600 PF12848 ABC transporter JK088_07610 PF10672 S-adenosylmethionine-dependent methyltransferase JK088_07610 PF02926 THUMP domain JK088_07610 PF01170 Putative RNA methylase family UPF0020 JK088_07615 PF07126 Cell-division protein ZapC JK088_07620 PF01180 Dihydroorotate dehydrogenase JK088_07625 PF05088 Bacterial NAD-glutamate dehydrogenase JK088_07635 PF01433 Peptidase family M1 domain JK088_07635 PF17432 Domain of unknown function (DUF3458_C) ARM repeats JK088_07635 PF11940 Domain of unknown function (DUF3458) Ig-like fold JK088_07645 PF00595 PDZ domain JK088_07645 PF11818 C-terminal domain of tail specific protease (DUF3340) JK088_07645 PF17804 Tail specific protease N-terminal domain JK088_07645 PF03572 Peptidase family S41 JK088_07650 PF17516 ProQ C-terminal domain JK088_07650 PF04352 ProQ/FINO family JK088_07655 PF13185 GAF domain JK088_07660 PF00005 ABC transporter JK088_07660 PF00664 ABC transporter transmembrane region JK088_07665 PF04403 Paraquat-inducible protein A JK088_07670 PF02470 MlaD protein JK088_07675 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF JK088_07675 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF JK088_07675 PF01189 16S rRNA methyltransferase RsmB/F JK088_07695 PF00793 DAHP synthetase I family JK088_07700 PF04461 Protein of unknown function (DUF520) JK088_07705 PF10414 Sirohaem synthase dimerisation region JK088_07705 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JK088_07705 PF14824 Sirohaem biosynthesis protein central JK088_07710 PF00497 Bacterial extracellular solute-binding proteins, family 3 JK088_07715 PF00528 Binding-protein-dependent transport system inner membrane component JK088_07720 PF00528 Binding-protein-dependent transport system inner membrane component JK088_07725 PF00005 ABC transporter JK088_07730 PF01027 Inhibitor of apoptosis-promoting Bax1 JK088_07740 PF04358 DsrC like protein JK088_07745 PF00708 Acylphosphatase JK088_07750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JK088_07750 PF00672 HAMP domain JK088_07750 PF02743 Cache domain JK088_07755 PF10672 S-adenosylmethionine-dependent methyltransferase JK088_07755 PF17785 PUA-like domain JK088_07770 PF00691 OmpA family JK088_07770 PF05736 OprF membrane domain JK088_07785 PF00691 OmpA family JK088_07785 PF05736 OprF membrane domain JK088_07795 PF17158 Membrane-associated sensor, integral membrane domain JK088_07795 PF00990 Diguanylate cyclase, GGDEF domain JK088_07800 PF06508 Queuosine biosynthesis protein QueC JK088_07805 PF04055 Radical SAM superfamily JK088_07820 PF00089 Trypsin JK088_07830 PF13193 AMP-binding enzyme C-terminal domain JK088_07830 PF16177 Acetyl-coenzyme A synthetase N-terminus JK088_07830 PF00501 AMP-binding enzyme JK088_07835 PF04303 PrpF protein JK088_07840 PF00694 Aconitase C-terminal domain JK088_07840 PF00330 Aconitase family (aconitate hydratase) JK088_07845 PF00285 Citrate synthase, C-terminal domain JK088_07875 PF01970 Tripartite tricarboxylate transporter TctA family JK088_07880 PF01925 Sulfite exporter TauE/SafE JK088_07890 PF05844 YopD protein JK088_07900 PF07720 Tetratricopeptide repeat JK088_07905 PF04792 V antigen (LcrV) protein JK088_07910 PF07216 LcrG protein JK088_07915 PF09621 Type III secretion system regulator (LcrR) JK088_07920 PF00771 FHIPEP family JK088_07940 PF09059 TyeA JK088_07945 PF07201 HrpJ-like domain JK088_07950 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JK088_07950 PF18269 T3SS EscN ATPase C-terminal domain JK088_07950 PF02874 ATP synthase alpha/beta family, beta-barrel domain JK088_07965 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JK088_07970 PF00813 FliP family JK088_07975 PF01313 Bacterial export proteins, family 3 JK088_07980 PF01311 Bacterial export proteins, family 1 JK088_07985 PF01312 FlhB HrpN YscU SpaS Family JK088_07990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_07990 PF03466 LysR substrate binding domain JK088_07995 PF12146 Serine aminopeptidase, S33 JK088_08000 PF12146 Serine aminopeptidase, S33 JK088_08030 PF02661 Fic/DOC family JK088_08040 PF02108 Flagellar assembly protein FliH JK088_08050 PF01514 Secretory protein of YscJ/FliF family JK088_08055 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI JK088_08065 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) JK088_08070 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF JK088_08080 PF16693 Inner membrane component of T3SS, periplasmic domain JK088_08080 PF16697 Inner membrane component of T3SS, cytoplasmic domain JK088_08085 PF00263 Bacterial type II and III secretion system protein JK088_08085 PF03958 Bacterial type II/III secretion system short domain JK088_08100 PF12833 Helix-turn-helix domain JK088_08120 PF00171 Aldehyde dehydrogenase family JK088_08125 PF01590 GAF domain JK088_08125 PF02954 Bacterial regulatory protein, Fis family JK088_08125 PF00158 Sigma-54 interaction domain JK088_08140 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain JK088_08140 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JK088_08145 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JK088_08150 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain JK088_08150 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain JK088_08155 PF12431 Transcriptional regulator JK088_08155 PF00072 Response regulator receiver domain JK088_08160 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain JK088_08160 PF00989 PAS fold JK088_08160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_08160 PF17203 Single cache domain 3 JK088_08175 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JK088_08190 PF03150 Di-haem cytochrome c peroxidase JK088_08190 PF00034 Cytochrome c JK088_08195 PF00696 Amino acid kinase family JK088_08195 PF13840 ACT domain JK088_08200 PF06339 Ectoine synthase JK088_08205 PF00202 Aminotransferase class-III JK088_08210 PF00583 Acetyltransferase (GNAT) family JK088_08215 PF02028 BCCT, betaine/carnitine/choline family transporter JK088_08230 PF00571 CBS domain JK088_08230 PF00005 ABC transporter JK088_08235 PF00528 Binding-protein-dependent transport system inner membrane component JK088_08240 PF04069 Substrate binding domain of ABC-type glycine betaine transport system JK088_08250 PF00501 AMP-binding enzyme JK088_08270 PF00072 Response regulator receiver domain JK088_08270 PF00486 Transcriptional regulatory protein, C terminal JK088_08275 PF00512 His Kinase A (phospho-acceptor) domain JK088_08275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_08275 PF08521 Two-component sensor kinase N-terminal JK088_08280 PF00884 Sulfatase JK088_08305 PF01235 Sodium:alanine symporter family JK088_08315 PF01810 LysE type translocator JK088_08320 PF02074 Carboxypeptidase Taq (M32) metallopeptidase JK088_08365 PF01320 Colicin immunity protein / pyocin immunity protein JK088_08395 PF02796 Helix-turn-helix domain of resolvase JK088_08395 PF00239 Resolvase, N terminal domain JK088_08430 PF07508 Recombinase JK088_08430 PF00239 Resolvase, N terminal domain JK088_08430 PF13408 Recombinase zinc beta ribbon domain JK088_08440 PF03279 Bacterial lipid A biosynthesis acyltransferase JK088_08445 PF13520 Amino acid permease JK088_08455 PF04204 Homoserine O-succinyltransferase JK088_08470 PF00563 EAL domain JK088_08470 PF03707 Bacterial signalling protein N terminal repeat JK088_08470 PF00990 Diguanylate cyclase, GGDEF domain JK088_08475 PF00672 HAMP domain JK088_08475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_08475 PF00512 His Kinase A (phospho-acceptor) domain JK088_08475 PF01627 Hpt domain JK088_08475 PF00072 Response regulator receiver domain JK088_08475 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JK088_08490 PF00132 Bacterial transferase hexapeptide (six repeats) JK088_08490 PF12464 Maltose acetyltransferase JK088_08510 PF04237 YjbR JK088_08515 PF01047 MarR family JK088_08525 PF12833 Helix-turn-helix domain JK088_08530 PF01411 tRNA synthetases class II (A) JK088_08530 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JK088_08530 PF02272 DHHA1 domain JK088_08540 PF00563 EAL domain JK088_08540 PF00196 Bacterial regulatory proteins, luxR family JK088_08545 PF02833 DHHA2 domain JK088_08545 PF01368 DHH family JK088_08550 PF00202 Aminotransferase class-III JK088_08555 PF00171 Aldehyde dehydrogenase family JK088_08560 PF04371 Porphyromonas-type peptidyl-arginine deiminase JK088_08565 PF00795 Carbon-nitrogen hydrolase JK088_08570 PF01266 FAD dependent oxidoreductase JK088_08575 PF00171 Aldehyde dehydrogenase family JK088_08580 PF07883 Cupin domain JK088_08580 PF01381 Helix-turn-helix JK088_08585 PF07722 Peptidase C26 JK088_08590 PF00120 Glutamine synthetase, catalytic domain JK088_08595 PF03553 Na+/H+ antiporter family JK088_08615 PF13302 Acetyltransferase (GNAT) domain JK088_08620 PF01810 LysE type translocator JK088_08715 PF13344 Haloacid dehalogenase-like hydrolase JK088_08715 PF00293 NUDIX domain JK088_08745 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH JK088_08750 PF05016 ParE toxin of type II toxin-antitoxin system, parDE JK088_08755 PF13099 Domain of unknown function (DUF3944) JK088_08755 PF03981 Ubiquinol-cytochrome C chaperone JK088_08815 PF00293 NUDIX domain JK088_08970 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JK088_09250 PF00583 Acetyltransferase (GNAT) family JK088_09285 PF00293 NUDIX domain JK088_09290 PF00583 Acetyltransferase (GNAT) family JK088_09440 PF13737 Transposase DDE domain JK088_09445 PF00293 NUDIX domain JK088_09465 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH JK088_09470 PF05016 ParE toxin of type II toxin-antitoxin system, parDE JK088_09480 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JK088_09615 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH JK088_09670 PF00293 NUDIX domain JK088_09735 PF00583 Acetyltransferase (GNAT) family JK088_09950 PF13302 Acetyltransferase (GNAT) domain JK088_09955 PF00158 Sigma-54 interaction domain JK088_09955 PF18024 Helix-turn-helix domain JK088_09960 PF05128 Domain of unknown function (DUF697) JK088_09965 PF04317 YcjX-like family, DUF463 JK088_09980 PF04715 Anthranilate synthase component I, N terminal region JK088_09980 PF00425 chorismate binding enzyme JK088_09985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_09985 PF00512 His Kinase A (phospho-acceptor) domain JK088_09985 PF09308 LuxQ, periplasmic JK088_09985 PF00072 Response regulator receiver domain JK088_10000 PF13737 Transposase DDE domain JK088_10010 PF03222 Tryptophan/tyrosine permease family JK088_10015 PF03313 Serine dehydratase alpha chain JK088_10015 PF03315 Serine dehydratase beta chain JK088_10020 PF04940 Sensors of blue-light using FAD JK088_10020 PF00563 EAL domain JK088_10030 PF01242 6-pyruvoyl tetrahydropterin synthase JK088_10035 PF00672 HAMP domain JK088_10035 PF12729 Four helix bundle sensory module for signal transduction JK088_10035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JK088_10040 PF00152 tRNA synthetases class II (D, K and N) JK088_10040 PF01336 OB-fold nucleic acid binding domain JK088_10050 PF00155 Aminotransferase class I and II JK088_10050 PF00392 Bacterial regulatory proteins, gntR family JK088_10065 PF00155 Aminotransferase class I and II JK088_10085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JK088_10085 PF00672 HAMP domain JK088_10090 PF02028 BCCT, betaine/carnitine/choline family transporter JK088_10095 PF01047 MarR family JK088_10100 PF00072 Response regulator receiver domain JK088_10100 PF00196 Bacterial regulatory proteins, luxR family JK088_10105 PF07730 Histidine kinase JK088_10105 PF17200 Single Cache domain 2 JK088_10110 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JK088_10120 PF03480 Bacterial extracellular solute-binding protein, family 7 JK088_10135 PF00753 Metallo-beta-lactamase superfamily JK088_10140 PF05951 Bacterial protein of unknown function (DUF882) JK088_10145 PF03734 L,D-transpeptidase catalytic domain JK088_10145 PF01471 Putative peptidoglycan binding domain JK088_10170 PF00925 GTP cyclohydrolase II JK088_10180 PF03918 Cytochrome C biogenesis protein JK088_10185 PF08534 Redoxin JK088_10190 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal JK088_10190 PF01578 Cytochrome C assembly protein JK088_10195 PF03916 Polysulphide reductase, NrfD JK088_10200 PF13247 4Fe-4S dicluster domain JK088_10210 PF02335 Cytochrome c552 JK088_10225 PF00521 DNA gyrase/topoisomerase IV, subunit A JK088_10225 PF03989 DNA gyrase C-terminal domain, beta-propeller JK088_10235 PF03477 ATP cone domain JK088_10235 PF02867 Ribonucleotide reductase, barrel domain JK088_10235 PF00317 Ribonucleotide reductase, all-alpha domain JK088_10240 PF00268 Ribonucleotide reductase, small chain JK088_10250 PF00994 Probable molybdopterin binding domain JK088_10265 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JK088_10270 PF16653 Saccharopine dehydrogenase C-terminal domain JK088_10270 PF03435 Saccharopine dehydrogenase NADP binding domain JK088_10275 PF00202 Aminotransferase class-III JK088_10300 PF01066 CDP-alcohol phosphatidyltransferase JK088_10305 PF01541 GIY-YIG catalytic domain JK088_10305 PF02151 UvrB/uvrC motif JK088_10305 PF08459 UvrC Helix-hairpin-helix N-terminal JK088_10310 PF00196 Bacterial regulatory proteins, luxR family JK088_10310 PF00072 Response regulator receiver domain JK088_10315 PF03104 DNA polymerase family B, exonuclease domain JK088_10315 PF00136 DNA polymerase family B JK088_10325 PF01132 Elongation factor P (EF-P) OB domain JK088_10325 PF08207 Elongation factor P (EF-P) KOW-like domain JK088_10325 PF09285 Elongation factor P, C-terminal JK088_10330 PF04269 Protein of unknown function, DUF440 JK088_10335 PF00849 RNA pseudouridylate synthase JK088_10335 PF01479 S4 domain JK088_10345 PF01300 Telomere recombination JK088_10350 PF02811 PHP domain JK088_10355 PF08056 Tryptophan operon leader peptide JK088_10360 PF04715 Anthranilate synthase component I, N terminal region JK088_10360 PF00425 chorismate binding enzyme JK088_10365 PF00117 Glutamine amidotransferase class-I JK088_10370 PF02885 Glycosyl transferase family, helical bundle domain JK088_10370 PF00591 Glycosyl transferase family, a/b domain JK088_10375 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase JK088_10375 PF00218 Indole-3-glycerol phosphate synthase JK088_10380 PF00291 Pyridoxal-phosphate dependent enzyme JK088_10385 PF00290 Tryptophan synthase alpha chain JK088_10390 PF00027 Cyclic nucleotide-binding domain JK088_10390 PF13545 Crp-like helix-turn-helix domain JK088_10395 PF00501 AMP-binding enzyme JK088_10395 PF13193 AMP-binding enzyme C-terminal domain JK088_10400 PF00375 Sodium:dicarboxylate symporter family JK088_10405 PF17327 Acyl homoserine lactone synthase JK088_10410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_10410 PF00072 Response regulator receiver domain JK088_10420 PF04279 Intracellular septation protein A JK088_10425 PF03061 Thioesterase superfamily JK088_10430 PF03795 YCII-related domain JK088_10440 PF01717 Cobalamin-independent synthase, Catalytic domain JK088_10440 PF08267 Cobalamin-independent synthase, N-terminal domain JK088_10445 PF03466 LysR substrate binding domain JK088_10445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_10460 PF00360 Phytochrome region JK088_10460 PF00990 Diguanylate cyclase, GGDEF domain JK088_10460 PF01590 GAF domain JK088_10460 PF00563 EAL domain JK088_10465 PF11842 Domain of unknown function (DUF3362) JK088_10465 PF08497 Radical SAM N-terminal JK088_10465 PF04055 Radical SAM superfamily JK088_10470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JK088_10470 PF00672 HAMP domain JK088_10475 PF00072 Response regulator receiver domain JK088_10475 PF00486 Transcriptional regulatory protein, C terminal JK088_10480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_10480 PF00672 HAMP domain JK088_10480 PF00512 His Kinase A (phospho-acceptor) domain JK088_10500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_10500 PF03466 LysR substrate binding domain JK088_10505 PF00529 HlyD membrane-fusion protein of T1SS JK088_10505 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JK088_10515 PF08267 Cobalamin-independent synthase, N-terminal domain JK088_10515 PF01717 Cobalamin-independent synthase, Catalytic domain JK088_10525 PF02311 AraC-like ligand binding domain JK088_10525 PF12833 Helix-turn-helix domain JK088_10530 PF00857 Isochorismatase family JK088_10535 PF12704 MacB-like periplasmic core domain JK088_10535 PF00005 ABC transporter JK088_10535 PF02687 FtsX-like permease family JK088_10540 PF00005 ABC transporter JK088_10540 PF02687 FtsX-like permease family JK088_10540 PF12704 MacB-like periplasmic core domain JK088_10545 PF00005 ABC transporter JK088_10545 PF02687 FtsX-like permease family JK088_10545 PF12704 MacB-like periplasmic core domain JK088_10555 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JK088_10570 PF05958 tRNA (Uracil-5-)-methyltransferase JK088_10585 PF00085 Thioredoxin JK088_10590 PF02683 Cytochrome C biogenesis protein transmembrane region JK088_10590 PF11412 Disulphide bond corrector protein DsbC JK088_10600 PF03466 LysR substrate binding domain JK088_10600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_10605 PF00072 Response regulator receiver domain JK088_10605 PF00196 Bacterial regulatory proteins, luxR family JK088_10610 PF00512 His Kinase A (phospho-acceptor) domain JK088_10610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_10615 PF13247 4Fe-4S dicluster domain JK088_10620 PF03916 Polysulphide reductase, NrfD JK088_10625 PF01568 Molydopterin dinucleotide binding domain JK088_10625 PF00384 Molybdopterin oxidoreductase JK088_10625 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JK088_10630 PF00034 Cytochrome c JK088_10635 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JK088_10640 PF04403 Paraquat-inducible protein A JK088_10645 PF02470 MlaD protein JK088_10655 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase JK088_10665 PF00535 Glycosyl transferase family 2 JK088_10670 PF01370 NAD dependent epimerase/dehydratase family JK088_10680 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JK088_10685 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JK088_10690 PF18073 Rubredoxin metal binding domain JK088_10695 PF06305 Lipopolysaccharide assembly protein A domain JK088_10700 PF00216 Bacterial DNA-binding protein JK088_10705 PF00575 S1 RNA binding domain JK088_10710 PF02224 Cytidylate kinase JK088_10715 PF01343 Peptidase family S49 JK088_10715 PF08496 Peptidase family S49 N-terminal JK088_10720 PF00106 short chain dehydrogenase JK088_10735 PF14579 Helix-hairpin-helix motif JK088_10735 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JK088_10735 PF07733 Bacterial DNA polymerase III alpha NTPase domain JK088_10735 PF01336 OB-fold nucleic acid binding domain JK088_10735 PF02811 PHP domain JK088_10740 PF01584 CheW-like domain JK088_10740 PF00072 Response regulator receiver domain JK088_10745 PF00480 ROK family JK088_10750 PF00224 Pyruvate kinase, barrel domain JK088_10750 PF02887 Pyruvate kinase, alpha/beta domain JK088_10755 PF01734 Patatin-like phospholipase JK088_10770 PF00209 Sodium:neurotransmitter symporter family JK088_10785 PF02378 Phosphotransferase system, EIIC JK088_10785 PF00367 phosphotransferase system, EIIB JK088_10790 PF01026 TatD related DNase JK088_10795 PF09115 DNA polymerase III, delta subunit, C terminal JK088_10805 PF02618 YceG-like family JK088_10815 PF00109 Beta-ketoacyl synthase, N-terminal domain JK088_10815 PF02801 Beta-ketoacyl synthase, C-terminal domain JK088_10820 PF00550 Phosphopantetheine attachment site JK088_10835 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JK088_10835 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JK088_10840 PF02504 Fatty acid synthesis protein JK088_10845 PF01783 Ribosomal L32p protein family JK088_10850 PF02620 Large ribosomal RNA subunit accumulation protein YceD JK088_10855 PF02545 Maf-like protein JK088_10860 PF01479 S4 domain JK088_10860 PF00849 RNA pseudouridylate synthase JK088_10865 PF12111 Polyribonucleotide phosphorylase C terminal JK088_10865 PF10150 Ribonuclease E/G family JK088_10865 PF00575 S1 RNA binding domain JK088_10870 PF00916 Sulfate permease family JK088_10870 PF01740 STAS domain JK088_10875 PF01451 Low molecular weight phosphotyrosine protein phosphatase JK088_10880 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP JK088_10880 PF12557 Cob(I)alamin adenosyltransferase N terminal JK088_10890 PF00485 Phosphoribulokinase / Uridine kinase family JK088_10895 PF10609 NUBPL iron-transfer P-loop NTPase JK088_10900 PF01588 Putative tRNA binding domain JK088_10900 PF09334 tRNA synthetases class I (M) JK088_10910 PF07840 FadR C-terminal domain JK088_10910 PF00392 Bacterial regulatory proteins, gntR family JK088_10915 PF06450 Bacterial Na+/H+ antiporter B (NhaB) JK088_10920 PF02600 Disulfide bond formation protein DsbB JK088_10925 PF03695 Uncharacterised protein family (UPF0149) JK088_10925 PF02810 SEC-C motif JK088_10930 PF01207 Dihydrouridine synthase (Dus) JK088_10935 PF00990 Diguanylate cyclase, GGDEF domain JK088_10935 PF00072 Response regulator receiver domain JK088_10940 PF00128 Alpha amylase, catalytic domain JK088_10940 PF02903 Alpha amylase, N-terminal ig-like domain JK088_10945 PF00005 ABC transporter JK088_10950 PF02653 Branched-chain amino acid transport system / permease component JK088_10960 PF04217 Protein of unknown function, DUF412 JK088_10965 PF00871 Acetokinase family JK088_10970 PF07085 DRTGG domain JK088_10970 PF01515 Phosphate acetyl/butaryl transferase JK088_10975 PF13194 Domain of unknown function (DUF4010) JK088_10985 PF13409 Glutathione S-transferase, N-terminal domain JK088_10990 PF00005 ABC transporter JK088_10990 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JK088_10995 PF00005 ABC transporter JK088_10995 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JK088_11000 PF00528 Binding-protein-dependent transport system inner membrane component JK088_11000 PF12911 N-terminal TM domain of oligopeptide transport permease C JK088_11005 PF00528 Binding-protein-dependent transport system inner membrane component JK088_11010 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JK088_11015 PF02391 MoaE protein JK088_11020 PF02597 ThiS family JK088_11025 PF01967 MoaC family JK088_11030 PF00994 Probable molybdopterin binding domain JK088_11035 PF06463 Molybdenum Cofactor Synthesis C JK088_11035 PF04055 Radical SAM superfamily JK088_11040 PF01933 Uncharacterised protein family UPF0052 JK088_11045 PF01627 Hpt domain JK088_11050 PF00158 Sigma-54 interaction domain JK088_11050 PF02954 Bacterial regulatory protein, Fis family JK088_11050 PF00072 Response regulator receiver domain JK088_11055 PF12344 Ultra-violet resistance protein B JK088_11055 PF02151 UvrB/uvrC motif JK088_11055 PF17757 UvrB interaction domain JK088_11055 PF04851 Type III restriction enzyme, res subunit JK088_11055 PF00271 Helicase conserved C-terminal domain JK088_11065 PF02508 Rnf-Nqr subunit, membrane protein JK088_11070 PF04060 Putative Fe-S cluster JK088_11075 PF12838 4Fe-4S dicluster domain JK088_11075 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JK088_11075 PF10531 SLBB domain JK088_11075 PF13375 RnfC Barrel sandwich hybrid domain JK088_11080 PF03116 NQR2, RnfD, RnfE family JK088_11085 PF04205 FMN-binding domain JK088_11090 PF02508 Rnf-Nqr subunit, membrane protein JK088_11095 PF10576 Iron-sulfur binding domain of endonuclease III JK088_11095 PF00633 Helix-hairpin-helix motif JK088_11095 PF00730 HhH-GPD superfamily base excision DNA repair protein JK088_11100 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JK088_11105 PF10952 Protein of unknown function (DUF2753) JK088_11110 PF00691 OmpA family JK088_11110 PF18393 MotY N-terminal domain JK088_11115 PF00929 Exonuclease JK088_11120 PF03553 Na+/H+ antiporter family JK088_11120 PF13726 Na+-H+ antiporter family JK088_11130 PF00462 Glutaredoxin JK088_11135 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JK088_11135 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JK088_11150 PF00171 Aldehyde dehydrogenase family JK088_11150 PF00465 Iron-containing alcohol dehydrogenase JK088_11155 PF01914 MarC family integral membrane protein JK088_11160 PF00027 Cyclic nucleotide-binding domain JK088_11160 PF00520 Ion transport protein JK088_11165 PF01118 Semialdehyde dehydrogenase, NAD binding domain JK088_11165 PF02774 Semialdehyde dehydrogenase, dimerisation domain JK088_11170 PF03553 Na+/H+ antiporter family JK088_11185 PF04245 37-kD nucleoid-associated bacterial protein JK088_11190 PF07208 Protein of unknown function (DUF1414) JK088_11195 PF00884 Sulfatase JK088_11195 PF11893 Domain of unknown function (DUF3413) JK088_11205 PF13356 Arm DNA-binding domain JK088_11205 PF00589 Phage integrase family JK088_11255 PF00850 Histone deacetylase domain JK088_11260 PF00106 short chain dehydrogenase JK088_11270 PF01131 DNA topoisomerase JK088_11270 PF01751 Toprim domain JK088_11275 PF00881 Nitroreductase family JK088_11280 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JK088_11280 PF07992 Pyridine nucleotide-disulphide oxidoreductase JK088_11285 PF01343 Peptidase family S49 JK088_11290 PF00710 Asparaginase, N-terminal JK088_11290 PF17763 Glutaminase/Asparaginase C-terminal domain JK088_11295 PF07023 Protein of unknown function (DUF1315) JK088_11305 PF01641 SelR domain JK088_11310 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JK088_11310 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JK088_11315 PF01263 Aldose 1-epimerase JK088_11320 PF02743 Cache domain JK088_11320 PF00672 HAMP domain JK088_11320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JK088_11325 PF13847 Methyltransferase domain JK088_11350 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JK088_11355 PF03992 Antibiotic biosynthesis monooxygenase JK088_11360 PF00924 Mechanosensitive ion channel JK088_11360 PF05552 Conserved TM helix JK088_11365 PF03692 Putative zinc- or iron-chelating domain JK088_11370 PF04226 Transglycosylase associated protein JK088_11375 PF03692 Putative zinc- or iron-chelating domain JK088_11385 PF03313 Serine dehydratase alpha chain JK088_11390 PF01042 Endoribonuclease L-PSP JK088_11400 PF00230 Major intrinsic protein JK088_11405 PF13662 Toprim domain JK088_11405 PF02132 RecR protein JK088_11410 PF02575 YbaB/EbfC DNA-binding family JK088_11415 PF12169 DNA polymerase III subunits gamma and tau domain III JK088_11415 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding JK088_11415 PF12170 DNA polymerase III tau subunit V interacting with alpha JK088_11420 PF00156 Phosphoribosyl transferase domain JK088_11425 PF04304 Protein of unknown function (DUF454) JK088_11430 PF00072 Response regulator receiver domain JK088_11435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_11435 PF03466 LysR substrate binding domain JK088_11440 PF00156 Phosphoribosyl transferase domain JK088_11445 PF02674 Colicin V production protein JK088_11450 PF05036 Sporulation related domain JK088_11455 PF08245 Mur ligase middle domain JK088_11455 PF02875 Mur ligase family, glutamate ligase domain JK088_11460 PF01039 Carboxyl transferase domain JK088_11460 PF17848 Acetyl-coA carboxylase zinc finger domain JK088_11465 PF01416 tRNA pseudouridine synthase JK088_11475 PF01118 Semialdehyde dehydrogenase, NAD binding domain JK088_11475 PF02774 Semialdehyde dehydrogenase, dimerisation domain JK088_11480 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JK088_11480 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JK088_11480 PF11890 Domain of unknown function (DUF3410) JK088_11485 PF00109 Beta-ketoacyl synthase, N-terminal domain JK088_11485 PF02801 Beta-ketoacyl synthase, C-terminal domain JK088_11490 PF05430 S-adenosyl-L-methionine-dependent methyltransferase JK088_11490 PF01266 FAD dependent oxidoreductase JK088_11495 PF03358 NADPH-dependent FMN reductase JK088_11500 PF08891 YfcL protein JK088_11505 PF04315 Elongation factor P hydroxylase JK088_11510 PF03458 UPF0126 domain JK088_11515 PF01264 Chorismate synthase JK088_11520 PF05175 Methyltransferase small domain JK088_11525 PF01713 Smr domain JK088_11530 PF00300 Histidine phosphatase superfamily (branch 1) JK088_11535 PF00675 Insulinase (Peptidase family M16) JK088_11535 PF05193 Peptidase M16 inactive domain JK088_11535 PF16187 Middle or third domain of peptidase_M16 JK088_11545 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JK088_11545 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JK088_11545 PF00378 Enoyl-CoA hydratase/isomerase JK088_11550 PF02803 Thiolase, C-terminal domain JK088_11550 PF00108 Thiolase, N-terminal domain JK088_11555 PF04542 Sigma-70 region 2 JK088_11555 PF08281 Sigma-70, region 4 JK088_11565 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JK088_11570 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JK088_11575 PF04333 MlaA lipoprotein JK088_11585 PF03918 Cytochrome C biogenesis protein JK088_11590 PF08534 Redoxin JK088_11595 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal JK088_11595 PF01578 Cytochrome C assembly protein JK088_11600 PF03100 CcmE JK088_11605 PF04995 Heme exporter protein D (CcmD) JK088_11610 PF01578 Cytochrome C assembly protein JK088_11615 PF03379 CcmB protein JK088_11620 PF00005 ABC transporter JK088_11630 PF01584 CheW-like domain JK088_11640 PF13614 AAA domain JK088_11645 PF01339 CheB methylesterase JK088_11645 PF00072 Response regulator receiver domain JK088_11650 PF00072 Response regulator receiver domain JK088_11650 PF01627 Hpt domain JK088_11650 PF02895 Signal transducing histidine kinase, homodimeric domain JK088_11650 PF01584 CheW-like domain JK088_11650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_11655 PF04344 Chemotaxis phosphatase, CheZ JK088_11660 PF00072 Response regulator receiver domain JK088_11665 PF04542 Sigma-70 region 2 JK088_11665 PF04539 Sigma-70 region 3 JK088_11665 PF04545 Sigma-70, region 4 JK088_11670 PF10609 NUBPL iron-transfer P-loop NTPase JK088_11675 PF00448 SRP54-type protein, GTPase domain JK088_11680 PF00771 FHIPEP family JK088_11685 PF01312 FlhB HrpN YscU SpaS Family JK088_11690 PF01311 Bacterial export proteins, family 1 JK088_11695 PF01313 Bacterial export proteins, family 3 JK088_11700 PF00813 FliP family JK088_11705 PF04347 Flagellar biosynthesis protein, FliO JK088_11710 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JK088_11715 PF02154 Flagellar motor switch protein FliM JK088_11715 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JK088_11735 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JK088_11735 PF18269 T3SS EscN ATPase C-terminal domain JK088_11745 PF01706 FliG C-terminal domain JK088_11745 PF14841 FliG middle domain JK088_11745 PF14842 FliG N-terminal domain JK088_11750 PF01514 Secretory protein of YscJ/FliF family JK088_11750 PF08345 Flagellar M-ring protein C-terminal JK088_11755 PF02049 Flagellar hook-basal body complex protein FliE JK088_11760 PF00072 Response regulator receiver domain JK088_11760 PF00158 Sigma-54 interaction domain JK088_11760 PF02954 Bacterial regulatory protein, Fis family JK088_11765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_11765 PF00512 His Kinase A (phospho-acceptor) domain JK088_11765 PF13188 PAS domain JK088_11770 PF06490 Flagellar regulatory protein FleQ JK088_11770 PF02954 Bacterial regulatory protein, Fis family JK088_11770 PF00158 Sigma-54 interaction domain JK088_11775 PF02561 Flagellar protein FliS JK088_11785 PF07196 Flagellin hook IN motif JK088_11785 PF07195 Flagellar hook-associated protein 2 C-terminus JK088_11785 PF02465 Flagellar hook-associated protein 2 N-terminus JK088_11790 PF03646 FlaG protein JK088_11795 PF00669 Bacterial flagellin N-terminal helical region JK088_11795 PF00700 Bacterial flagellin C-terminal helical region JK088_11795 PF07196 Flagellin hook IN motif JK088_11800 PF00700 Bacterial flagellin C-terminal helical region JK088_11800 PF00669 Bacterial flagellin N-terminal helical region JK088_11800 PF07196 Flagellin hook IN motif JK088_11805 PF07196 Flagellin hook IN motif JK088_11805 PF00700 Bacterial flagellin C-terminal helical region JK088_11805 PF00669 Bacterial flagellin N-terminal helical region JK088_11810 PF04261 Dyp-type peroxidase family JK088_11815 PF11143 Protein of unknown function (DUF2919) JK088_11835 PF03960 ArsC family JK088_11840 PF07687 Peptidase dimerisation domain JK088_11840 PF01546 Peptidase family M20/M25/M40 JK088_11855 PF06804 NlpB/DapX lipoprotein JK088_11860 PF00701 Dihydrodipicolinate synthetase family JK088_11865 PF01842 ACT domain JK088_11870 PF00578 AhpC/TSA family JK088_11875 PF01594 AI-2E family transporter JK088_11885 PF01435 Peptidase family M48 JK088_11885 PF13181 Tetratricopeptide repeat JK088_11890 PF03960 ArsC family JK088_11895 PF03358 NADPH-dependent FMN reductase JK088_11910 PF00860 Permease family JK088_11920 PF02769 AIR synthase related protein, C-terminal domain JK088_11920 PF00586 AIR synthase related protein, N-terminal domain JK088_11925 PF00551 Formyl transferase JK088_11930 PF13230 Glutamine amidotransferases class-II JK088_11935 PF13580 SIS domain JK088_11940 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JK088_11940 PF02770 Acyl-CoA dehydrogenase, middle domain JK088_11940 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JK088_11940 PF09317 Domain of unknown function (DUF1974) JK088_11945 PF01740 STAS domain JK088_11945 PF00916 Sulfate permease family JK088_11955 PF00929 Exonuclease JK088_11960 PF00075 RNase H JK088_11965 PF08241 Methyltransferase domain JK088_11970 PF16123 Hydroxyacylglutathione hydrolase C-terminus JK088_11970 PF00753 Metallo-beta-lactamase superfamily JK088_11975 PF01476 LysM domain JK088_11975 PF01464 Transglycosylase SLT domain JK088_11985 PF03372 Endonuclease/Exonuclease/phosphatase family JK088_11990 PF00543 Nitrogen regulatory protein P-II JK088_11995 PF00034 Cytochrome c JK088_12000 PF01171 PP-loop family JK088_12000 PF09179 TilS substrate binding domain JK088_12000 PF11734 TilS substrate C-terminal domain JK088_12005 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit JK088_12010 PF07733 Bacterial DNA polymerase III alpha NTPase domain JK088_12010 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JK088_12010 PF14579 Helix-hairpin-helix motif JK088_12010 PF02811 PHP domain JK088_12010 PF01336 OB-fold nucleic acid binding domain JK088_12015 PF01351 Ribonuclease HII JK088_12020 PF02684 Lipid-A-disaccharide synthetase JK088_12025 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 JK088_12025 PF00132 Bacterial transferase hexapeptide (six repeats) JK088_12030 PF07977 FabA-like domain JK088_12035 PF00132 Bacterial transferase hexapeptide (six repeats) JK088_12035 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD JK088_12040 PF03938 Outer membrane protein (OmpH-like) JK088_12045 PF01103 Surface antigen JK088_12045 PF07244 Surface antigen variable number repeat JK088_12050 PF17820 PDZ domain JK088_12050 PF02163 Peptidase family M50 JK088_12055 PF13288 DXP reductoisomerase C-terminal domain JK088_12055 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase JK088_12055 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain JK088_12065 PF01255 Putative undecaprenyl diphosphate synthase JK088_12070 PF01765 Ribosome recycling factor JK088_12075 PF00696 Amino acid kinase family JK088_12080 PF00889 Elongation factor TS JK088_12085 PF00318 Ribosomal protein S2 JK088_12090 PF00557 Metallopeptidase family M24 JK088_12095 PF01842 ACT domain JK088_12095 PF08335 GlnD PII-uridylyltransferase JK088_12095 PF01966 HD domain JK088_12095 PF01909 Nucleotidyltransferase domain JK088_12100 PF11944 Protein of unknown function (DUF3461) JK088_12105 PF00849 RNA pseudouridylate synthase JK088_12110 PF04287 tRNA pseudouridine synthase C JK088_12135 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 JK088_12140 PF03806 AbgT putative transporter family JK088_12145 PF00444 Ribosomal protein L36 JK088_12150 PF01197 Ribosomal protein L31 JK088_12155 PF01980 tRNA-methyltransferase O JK088_12155 PF18389 TrmO C-terminal domain JK088_12160 PF03129 Anticodon binding domain JK088_12160 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JK088_12160 PF04073 Aminoacyl-tRNA editing domain JK088_12170 PF06786 Uncharacterised protein family (UPF0253) JK088_12180 PF00209 Sodium:neurotransmitter symporter family JK088_12195 PF01272 Transcription elongation factor, GreA/GreB, C-term JK088_12195 PF03449 Transcription elongation factor, N-terminal JK088_12200 PF09382 RQC domain JK088_12200 PF16124 RecQ zinc-binding JK088_12200 PF00570 HRDC domain JK088_12200 PF00271 Helicase conserved C-terminal domain JK088_12200 PF00270 DEAD/DEAH box helicase JK088_12205 PF00817 impB/mucB/samB family JK088_12205 PF11799 impB/mucB/samB family C-terminal domain JK088_12205 PF11798 IMS family HHH motif JK088_12220 PF02424 ApbE family JK088_12225 PF00970 Oxidoreductase FAD-binding domain JK088_12225 PF00111 2Fe-2S iron-sulfur cluster binding domain JK088_12225 PF00175 Oxidoreductase NAD-binding domain JK088_12230 PF02508 Rnf-Nqr subunit, membrane protein JK088_12235 PF02508 Rnf-Nqr subunit, membrane protein JK088_12240 PF04205 FMN-binding domain JK088_12245 PF03116 NQR2, RnfD, RnfE family JK088_12250 PF11973 NQRA C-terminal domain JK088_12250 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) JK088_12255 PF01722 BolA-like protein JK088_12260 PF05175 Methyltransferase small domain JK088_12265 PF03923 Uncharacterized lipoprotein JK088_12265 PF08139 Prokaryotic membrane lipoprotein lipid attachment site JK088_12270 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JK088_12275 PF07690 Major Facilitator Superfamily JK088_12285 PF04542 Sigma-70 region 2 JK088_12285 PF04545 Sigma-70, region 4 JK088_12300 PF03502 Nucleoside-specific channel-forming protein, Tsx JK088_12305 PF02558 Ketopantoate reductase PanE/ApbA JK088_12305 PF08546 Ketopantoate reductase PanE/ApbA C terminal JK088_12310 PF01965 DJ-1/PfpI family JK088_12315 PF00266 Aminotransferase class-V JK088_12320 PF17158 Membrane-associated sensor, integral membrane domain JK088_12320 PF00990 Diguanylate cyclase, GGDEF domain JK088_12325 PF02657 Fe-S metabolism associated domain JK088_12330 PF00899 ThiF family JK088_12335 PF06725 3D domain JK088_12335 PF03562 MltA specific insert domain JK088_12345 PF00583 Acetyltransferase (GNAT) family JK088_12345 PF00696 Amino acid kinase family JK088_12355 PF13538 UvrD-like helicase C-terminal domain JK088_12360 PF12705 PD-(D/E)XK nuclease superfamily JK088_12360 PF00580 UvrD/REP helicase N-terminal domain JK088_12360 PF13361 UvrD-like helicase C-terminal domain JK088_12365 PF17946 RecC C-terminal domain JK088_12370 PF11893 Domain of unknown function (DUF3413) JK088_12370 PF00884 Sulfatase JK088_12380 PF03466 LysR substrate binding domain JK088_12380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_12385 PF07130 YebG protein JK088_12390 PF14602 Hexapeptide repeat of succinyl-transferase JK088_12390 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle JK088_12395 PF03009 Glycerophosphoryl diester phosphodiesterase family JK088_12400 PF07690 Major Facilitator Superfamily JK088_12405 PF00230 Major intrinsic protein JK088_12410 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JK088_12410 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JK088_12415 PF00455 DeoR C terminal sensor domain JK088_12415 PF08220 DeoR-like helix-turn-helix domain JK088_12420 PF01266 FAD dependent oxidoreductase JK088_12420 PF16901 C-terminal domain of alpha-glycerophosphate oxidase JK088_12425 PF01544 CorA-like Mg2+ transporter protein JK088_12445 PF01588 Putative tRNA binding domain JK088_12450 PF00356 Bacterial regulatory proteins, lacI family JK088_12465 PF00356 Bacterial regulatory proteins, lacI family JK088_12470 PF01263 Aldose 1-epimerase JK088_12475 PF10509 Galactokinase galactose-binding signature JK088_12475 PF08544 GHMP kinases C terminal JK088_12475 PF00288 GHMP kinases N terminal domain JK088_12480 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain JK088_12480 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain JK088_12485 PF16363 GDP-mannose 4,6 dehydratase JK088_12490 PF00356 Bacterial regulatory proteins, lacI family JK088_12495 PF02929 Beta galactosidase small chain JK088_12495 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JK088_12495 PF02837 Glycosyl hydrolases family 2, sugar binding domain JK088_12495 PF16353 Domain of unknown function(DUF4981) JK088_12495 PF00703 Glycosyl hydrolases family 2 JK088_12505 PF13520 Amino acid permease JK088_12510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_12510 PF03466 LysR substrate binding domain JK088_12540 PF00437 Type II/IV secretion system protein JK088_12570 PF04972 BON domain JK088_12570 PF00263 Bacterial type II and III secretion system protein JK088_12570 PF13629 Pilus formation protein N terminal region JK088_12595 PF02805 Metal binding domain of Ada JK088_12595 PF12833 Helix-turn-helix domain JK088_12600 PF00501 AMP-binding enzyme JK088_12610 PF03466 LysR substrate binding domain JK088_12610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_12615 PF00009 Elongation factor Tu GTP binding domain JK088_12615 PF03764 Elongation factor G, domain IV JK088_12615 PF14492 Elongation Factor G, domain II JK088_12615 PF00679 Elongation factor G C-terminus JK088_12615 PF03144 Elongation factor Tu domain 2 JK088_12620 PF18073 Rubredoxin metal binding domain JK088_12630 PF18429 Domain of unknown function (DUF5609) JK088_12640 PF01048 Phosphorylase superfamily JK088_12645 PF01676 Metalloenzyme superfamily JK088_12650 PF02885 Glycosyl transferase family, helical bundle domain JK088_12650 PF00591 Glycosyl transferase family, a/b domain JK088_12650 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain JK088_12655 PF01791 DeoC/LacD family aldolase JK088_12660 PF07662 Na+ dependent nucleoside transporter C-terminus JK088_12660 PF07670 Nucleoside recognition JK088_12660 PF01773 Na+ dependent nucleoside transporter N-terminus JK088_12665 PF01026 TatD related DNase JK088_12675 PF16658 Class II release factor RF3, C-terminal domain JK088_12675 PF03144 Elongation factor Tu domain 2 JK088_12675 PF00009 Elongation factor Tu GTP binding domain JK088_12695 PF13508 Acetyltransferase (GNAT) domain JK088_12700 PF02036 SCP-2 sterol transfer family JK088_12705 PF00990 Diguanylate cyclase, GGDEF domain JK088_12705 PF03707 Bacterial signalling protein N terminal repeat JK088_12705 PF00563 EAL domain JK088_12710 PF01136 Peptidase family U32 JK088_12715 PF01136 Peptidase family U32 JK088_12720 PF01554 MatE JK088_12730 PF07719 Tetratricopeptide repeat JK088_12730 PF13181 Tetratricopeptide repeat JK088_12735 PF00013 KH domain JK088_12735 PF00575 S1 RNA binding domain JK088_12735 PF03725 3' exoribonuclease family, domain 2 JK088_12735 PF01138 3' exoribonuclease family, domain 1 JK088_12735 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JK088_12740 PF00312 Ribosomal protein S15 JK088_12745 PF09157 Pseudouridine synthase II TruB, C-terminal JK088_12745 PF01509 TruB family pseudouridylate synthase (N terminal domain) JK088_12745 PF16198 tRNA pseudouridylate synthase B C-terminal domain JK088_12750 PF02033 Ribosome-binding factor A JK088_12755 PF00009 Elongation factor Tu GTP binding domain JK088_12755 PF04760 Translation initiation factor IF-2, N-terminal region JK088_12755 PF11987 Translation-initiation factor 2 JK088_12755 PF08364 Bacterial translation initiation factor IF-2 associated region JK088_12760 PF13184 NusA-like KH domain JK088_12760 PF08529 NusA N-terminal domain JK088_12760 PF00575 S1 RNA binding domain JK088_12765 PF02576 RimP N-terminal domain JK088_12765 PF17384 RimP C-terminal SH3 domain JK088_12780 PF03840 Preprotein translocase SecG subunit JK088_12785 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JK088_12785 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JK088_12785 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JK088_12785 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JK088_12790 PF00809 Pterin binding enzyme JK088_12795 PF06480 FtsH Extracellular JK088_12795 PF01434 Peptidase family M41 JK088_12795 PF00004 ATPase family associated with various cellular activities (AAA) JK088_12795 PF17862 AAA+ lid domain JK088_12800 PF01728 FtsJ-like methyltransferase JK088_12805 PF01985 CRS1 / YhbY (CRM) domain JK088_12810 PF01272 Transcription elongation factor, GreA/GreB, C-term JK088_12810 PF03449 Transcription elongation factor, N-terminal JK088_12815 PF13609 Gram-negative porin JK088_12820 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family JK088_12830 PF00579 tRNA synthetases class I (W and Y) JK088_12835 PF01551 Peptidase family M23 JK088_12835 PF01476 LysM domain JK088_12835 PF08525 Opacity-associated protein A N-terminal motif JK088_12840 PF00873 AcrB/AcrD/AcrF family JK088_12850 PF01521 Iron-sulphur cluster biosynthesis JK088_12855 PF00202 Aminotransferase class-III JK088_12860 PF01594 AI-2E family transporter JK088_12865 PF05175 Methyltransferase small domain JK088_12865 PF08468 Methyltransferase small domain N-terminal JK088_12870 PF00512 His Kinase A (phospho-acceptor) domain JK088_12870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_12870 PF00072 Response regulator receiver domain JK088_12870 PF00497 Bacterial extracellular solute-binding proteins, family 3 JK088_12875 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JK088_12880 PF00528 Binding-protein-dependent transport system inner membrane component JK088_12885 PF00528 Binding-protein-dependent transport system inner membrane component JK088_12885 PF12911 N-terminal TM domain of oligopeptide transport permease C JK088_12890 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JK088_12890 PF00005 ABC transporter JK088_12895 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JK088_12895 PF00005 ABC transporter JK088_12905 PF01869 BadF/BadG/BcrA/BcrD ATPase family JK088_12910 PF02838 Glycosyl hydrolase family 20, domain 2 JK088_12910 PF00728 Glycosyl hydrolase family 20, catalytic domain JK088_12915 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain JK088_12915 PF06165 Glycosyltransferase family 36 JK088_12920 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JK088_12920 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JK088_12920 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JK088_12920 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JK088_12925 PF00005 ABC transporter JK088_12925 PF08402 TOBE domain JK088_12935 PF13416 Bacterial extracellular solute-binding protein JK088_12940 PF00909 Ammonium Transporter Family JK088_12945 PF00543 Nitrogen regulatory protein P-II JK088_12950 PF06062 Uncharacterised protein family (UPF0231) JK088_12955 PF06434 Aconitate hydratase 2 N-terminus JK088_12955 PF00330 Aconitase family (aconitate hydratase) JK088_12955 PF11791 Aconitate B N-terminal domain JK088_12960 PF01734 Patatin-like phospholipase JK088_12965 PF00905 Penicillin binding protein transpeptidase domain JK088_12965 PF14814 Bifunctional transglycosylase second domain JK088_12965 PF00912 Transglycosylase JK088_12970 PF00271 Helicase conserved C-terminal domain JK088_12970 PF08482 ATP-dependent helicase C-terminal JK088_12970 PF00270 DEAD/DEAH box helicase JK088_12970 PF04408 Helicase associated domain (HA2) JK088_12975 PF17746 SfsA N-terminal OB domain JK088_12975 PF03749 Sugar fermentation stimulation protein RE domain JK088_12980 PF01258 Prokaryotic dksA/traR C4-type zinc finger JK088_12985 PF00749 tRNA synthetases class I (E and Q), catalytic domain JK088_12990 PF12627 Probable RNA and SrmB- binding site of polymerase A JK088_12990 PF12626 Polymerase A arginine-rich C-terminus JK088_12990 PF01743 Poly A polymerase head domain JK088_12995 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JK088_13000 PF02548 Ketopantoate hydroxymethyltransferase JK088_13005 PF02569 Pantoate-beta-alanine ligase JK088_13010 PF03279 Bacterial lipid A biosynthesis acyltransferase JK088_13015 PF01061 ABC-2 type transporter JK088_13020 PF00005 ABC transporter JK088_13025 PF01740 STAS domain JK088_13025 PF00916 Sulfate permease family JK088_13030 PF00484 Carbonic anhydrase JK088_13035 PF00156 Phosphoribosyl transferase domain JK088_13040 PF00440 Bacterial regulatory proteins, tetR family JK088_13045 PF07992 Pyridine nucleotide-disulphide oxidoreductase JK088_13045 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JK088_13050 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JK088_13050 PF00364 Biotin-requiring enzyme JK088_13050 PF02817 e3 binding domain JK088_13055 PF17831 Pyruvate dehydrogenase E1 component middle domain JK088_13055 PF00456 Transketolase, thiamine diphosphate binding domain JK088_13060 PF07729 FCD domain JK088_13060 PF00392 Bacterial regulatory proteins, gntR family JK088_13065 PF01510 N-acetylmuramoyl-L-alanine amidase JK088_13070 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain JK088_13070 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain JK088_13075 PF07963 Prokaryotic N-terminal methylation motif JK088_13075 PF00114 Pilin (bacterial filament) JK088_13080 PF00437 Type II/IV secretion system protein JK088_13080 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JK088_13085 PF00482 Type II secretion system (T2SS), protein F JK088_13090 PF06750 Bacterial Peptidase A24 N-terminal domain JK088_13090 PF01478 Type IV leader peptidase family JK088_13095 PF01121 Dephospho-CoA kinase JK088_13100 PF07072 Cell division protein JK088_13105 PF03884 DNA gyrase inhibitor YacG JK088_13110 PF01245 Ribosomal protein L19 JK088_13115 PF01746 tRNA (Guanine-1)-methyltransferase JK088_13120 PF01782 RimM N-terminal domain JK088_13120 PF05239 PRC-barrel domain JK088_13125 PF00886 Ribosomal protein S16 JK088_13130 PF02978 Signal peptide binding domain JK088_13130 PF02881 SRP54-type protein, helical bundle domain JK088_13130 PF00448 SRP54-type protein, GTPase domain JK088_13135 PF01578 Cytochrome C assembly protein JK088_13140 PF00571 CBS domain JK088_13140 PF03471 Transporter associated domain JK088_13140 PF01595 Cyclin M transmembrane N-terminal domain JK088_13145 PF02664 S-Ribosylhomocysteinase (LuxS) JK088_13155 PF04262 Glutamate-cysteine ligase JK088_13160 PF05193 Peptidase M16 inactive domain JK088_13160 PF00675 Insulinase (Peptidase family M16) JK088_13165 PF09335 SNARE associated Golgi protein JK088_13170 PF08240 Alcohol dehydrogenase GroES-like domain JK088_13170 PF00107 Zinc-binding dehydrogenase JK088_13175 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit JK088_13180 PF00364 Biotin-requiring enzyme JK088_13180 PF00682 HMGL-like JK088_13180 PF02436 Conserved carboxylase domain JK088_13185 PF04277 Oxaloacetate decarboxylase, gamma chain JK088_13240 PF02599 Global regulator protein family JK088_13245 PF13840 ACT domain JK088_13245 PF00696 Amino acid kinase family JK088_13245 PF01842 ACT domain JK088_13250 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JK088_13250 PF01411 tRNA synthetases class II (A) JK088_13250 PF02272 DHHA1 domain JK088_13255 PF02631 RecX family JK088_13280 PF10544 T5orf172 domain JK088_13320 PF00154 recA bacterial DNA recombination protein JK088_13330 PF02464 Competence-damaged protein JK088_13340 PF02384 N-6 DNA Methylase JK088_13340 PF12161 HsdM N-terminal domain JK088_13355 PF18766 SWI2/SNF2 ATPase JK088_13355 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) JK088_13355 PF12008 Type I restriction and modification enzyme - subunit R C terminal JK088_13375 PF13737 Transposase DDE domain JK088_13425 PF00589 Phage integrase family JK088_13425 PF14659 Phage integrase, N-terminal SAM-like domain JK088_13430 PF05188 MutS domain II JK088_13430 PF01624 MutS domain I JK088_13430 PF05192 MutS domain III JK088_13430 PF00488 MutS domain V JK088_13430 PF05190 MutS family domain IV JK088_13435 PF04545 Sigma-70, region 4 JK088_13435 PF04539 Sigma-70 region 3 JK088_13435 PF04542 Sigma-70 region 2 JK088_13435 PF00140 Sigma-70 factor, region 1.2 JK088_13440 PF01551 Peptidase family M23 JK088_13440 PF01476 LysM domain JK088_13450 PF01975 Survival protein SurE JK088_13455 PF01142 tRNA pseudouridine synthase D (TruD) JK088_13460 PF02542 YgbB family JK088_13465 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase JK088_13470 PF04977 Septum formation initiator JK088_13475 PF03952 Enolase, N-terminal domain JK088_13475 PF00113 Enolase, C-terminal TIM barrel domain JK088_13480 PF00117 Glutamine amidotransferase class-I JK088_13480 PF06418 CTP synthase N-terminus JK088_13485 PF03819 MazG nucleotide pyrophosphohydrolase domain JK088_13490 PF13291 ACT domain JK088_13490 PF02824 TGS domain JK088_13490 PF04607 Region found in RelA / SpoT proteins JK088_13495 PF01938 TRAM domain JK088_13495 PF05958 tRNA (Uracil-5-)-methyltransferase JK088_13500 PF00672 HAMP domain JK088_13500 PF00512 His Kinase A (phospho-acceptor) domain JK088_13500 PF01627 Hpt domain JK088_13500 PF00072 Response regulator receiver domain JK088_13500 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JK088_13500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_13505 PF01648 4'-phosphopantetheinyl transferase superfamily JK088_13510 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ JK088_13515 PF11967 Recombination protein O N terminal JK088_13515 PF02565 Recombination protein O C terminal JK088_13520 PF01926 50S ribosome-binding GTPase JK088_13520 PF07650 KH domain JK088_13525 PF14622 Ribonuclease-III-like JK088_13525 PF00035 Double-stranded RNA binding motif JK088_13530 PF10502 Signal peptidase, peptidase S26 JK088_13535 PF00679 Elongation factor G C-terminus JK088_13535 PF00009 Elongation factor Tu GTP binding domain JK088_13535 PF03144 Elongation factor Tu domain 2 JK088_13535 PF06421 GTP-binding protein LepA C-terminus JK088_13545 PF03888 MucB/RseB N-terminal domain JK088_13545 PF17188 MucB/RseB C-terminal domain JK088_13550 PF03873 Anti sigma-E protein RseA, C-terminal domain JK088_13550 PF03872 Anti sigma-E protein RseA, N-terminal domain JK088_13555 PF04542 Sigma-70 region 2 JK088_13555 PF08281 Sigma-70, region 4 JK088_13560 PF00890 FAD binding domain JK088_13560 PF02910 Fumarate reductase flavoprotein C-term JK088_13565 PF03937 Flavinator of succinate dehydrogenase JK088_13570 PF01571 Aminomethyltransferase folate-binding domain JK088_13585 PF01494 FAD binding domain JK088_13590 PF01494 FAD binding domain JK088_13595 PF03695 Uncharacterised protein family (UPF0149) JK088_13600 PF05164 Cell division protein ZapA JK088_13610 PF01812 5-formyltetrahydrofolate cyclo-ligase family JK088_13615 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) JK088_13620 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JK088_13620 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JK088_13620 PF01842 ACT domain JK088_13625 PF04402 Protein of unknown function (DUF541) JK088_13630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_13630 PF03466 LysR substrate binding domain JK088_13635 PF01810 LysE type translocator JK088_13645 PF00924 Mechanosensitive ion channel JK088_13645 PF05552 Conserved TM helix JK088_13650 PF01116 Fructose-bisphosphate aldolase class-II JK088_13655 PF00162 Phosphoglycerate kinase JK088_13660 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JK088_13660 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JK088_13665 PF07715 TonB-dependent Receptor Plug Domain JK088_13665 PF00593 TonB dependent receptor JK088_13670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_13670 PF03466 LysR substrate binding domain JK088_13675 PF02779 Transketolase, pyrimidine binding domain JK088_13675 PF02780 Transketolase, C-terminal domain JK088_13675 PF00456 Transketolase, thiamine diphosphate binding domain JK088_13680 PF02773 S-adenosylmethionine synthetase, C-terminal domain JK088_13680 PF00438 S-adenosylmethionine synthetase, N-terminal domain JK088_13680 PF02772 S-adenosylmethionine synthetase, central domain JK088_13690 PF10263 SprT-like family JK088_13690 PF17283 SprT-like zinc ribbon domain JK088_13695 PF04231 Endonuclease I JK088_13700 PF04452 RNA methyltransferase JK088_13705 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain JK088_13705 PF02951 Prokaryotic glutathione synthetase, N-terminal domain JK088_13710 PF02622 Uncharacterized ACR, COG1678 JK088_13715 PF03652 Holliday junction resolvase JK088_13720 PF00437 Type II/IV secretion system protein JK088_13725 PF00437 Type II/IV secretion system protein JK088_13730 PF01168 Alanine racemase, N-terminal domain JK088_13735 PF03807 NADP oxidoreductase coenzyme F420-dependent JK088_13735 PF14748 Pyrroline-5-carboxylate reductase dimerisation JK088_13740 PF02325 YGGT family JK088_13745 PF02594 Uncharacterised ACR, YggU family COG1872 JK088_13755 PF01725 Ham1 family JK088_13760 PF04055 Radical SAM superfamily JK088_13760 PF06969 HemN C-terminal domain JK088_13765 PF04960 Glutaminase JK088_13770 PF02086 D12 class N6 adenine-specific DNA methyltransferase JK088_13775 PF02390 Putative methyltransferase JK088_13780 PF00633 Helix-hairpin-helix motif JK088_13780 PF00730 HhH-GPD superfamily base excision DNA repair protein JK088_13780 PF14815 NUDIX domain JK088_13785 PF04362 Bacterial Fe(2+) trafficking JK088_13790 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain JK088_13790 PF01464 Transglycosylase SLT domain JK088_13830 PF00672 HAMP domain JK088_13830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JK088_13830 PF17200 Single Cache domain 2 JK088_13860 PF00171 Aldehyde dehydrogenase family JK088_13900 PF00072 Response regulator receiver domain JK088_13905 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JK088_13905 PF00356 Bacterial regulatory proteins, lacI family JK088_13910 PF04794 YdjC-like protein JK088_13915 PF02056 Family 4 glycosyl hydrolase JK088_13915 PF11975 Family 4 glycosyl hydrolase C-terminal domain JK088_13920 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit JK088_13925 PF02378 Phosphotransferase system, EIIC JK088_13930 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JK088_13935 PF01522 Polysaccharide deacetylase JK088_13945 PF00106 short chain dehydrogenase JK088_13950 PF10011 Predicted membrane protein (DUF2254) JK088_13960 PF03739 Lipopolysaccharide export system permease LptF/LptG JK088_13965 PF03739 Lipopolysaccharide export system permease LptF/LptG JK088_13970 PF00883 Cytosol aminopeptidase family, catalytic domain JK088_13970 PF02789 Cytosol aminopeptidase family, N-terminal domain JK088_13975 PF04364 DNA polymerase III chi subunit, HolC JK088_13980 PF08264 Anticodon-binding domain of tRNA JK088_13980 PF00133 tRNA synthetases class I (I, L, M and V) JK088_13980 PF10458 Valyl tRNA synthetase tRNA binding arm JK088_13990 PF00583 Acetyltransferase (GNAT) family JK088_14000 PF06877 Regulator of ribonuclease activity B JK088_14010 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JK088_14010 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JK088_14020 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JK088_14020 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JK088_14025 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain JK088_14025 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain JK088_14030 PF01042 Endoribonuclease L-PSP JK088_14035 PF01553 Acyltransferase JK088_14040 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JK088_14045 PF01722 BolA-like protein JK088_14055 PF05494 MlaC protein JK088_14060 PF02470 MlaD protein JK088_14065 PF02405 Permease MlaE JK088_14070 PF00005 ABC transporter JK088_14075 PF01699 Sodium/calcium exchanger protein JK088_14080 PF00571 CBS domain JK088_14080 PF01380 SIS domain JK088_14090 PF03968 OstA-like protein JK088_14095 PF00005 ABC transporter JK088_14095 PF12399 Branched-chain amino acid ATP-binding cassette transporter JK088_14100 PF04963 Sigma-54 factor, core binding domain JK088_14100 PF00309 Sigma-54 factor, Activator interacting domain (AID) JK088_14100 PF04552 Sigma-54, DNA binding domain JK088_14105 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JK088_14110 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JK088_14115 PF03668 P-loop ATPase protein family JK088_14120 PF00381 PTS HPr component phosphorylation site JK088_14125 PF01769 Divalent cation transporter JK088_14125 PF00571 CBS domain JK088_14125 PF03448 MgtE intracellular N domain JK088_14130 PF01523 Putative modulator of DNA gyrase JK088_14135 PF04751 Protein of unknown function (DUF615) JK088_14140 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JK088_14140 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JK088_14145 PF00849 RNA pseudouridylate synthase JK088_14155 PF00176 SNF2 family N-terminal domain JK088_14155 PF00271 Helicase conserved C-terminal domain JK088_14155 PF12137 RNA polymerase recycling family C-terminal JK088_14155 PF18337 RapA N-terminal Tudor like domain JK088_14155 PF18339 RapA N-terminal Tudor like domain 1 JK088_14160 PF13638 PIN domain JK088_14160 PF02562 PhoH-like protein JK088_14165 PF01523 Putative modulator of DNA gyrase JK088_14175 PF13502 AsmA-like C-terminal region JK088_14175 PF13116 Protein of unknown function JK088_14180 PF10150 Ribonuclease E/G family JK088_14180 PF00575 S1 RNA binding domain JK088_14185 PF02545 Maf-like protein JK088_14190 PF04093 rod shape-determining protein MreD JK088_14195 PF04085 rod shape-determining protein MreC JK088_14235 PF07963 Prokaryotic N-terminal methylation motif JK088_14245 PF00482 Type II secretion system (T2SS), protein F JK088_14250 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JK088_14250 PF00437 Type II/IV secretion system protein JK088_14260 PF01471 Putative peptidoglycan binding domain JK088_14260 PF13401 AAA domain JK088_14265 PF11741 AMIN domain JK088_14265 PF00263 Bacterial type II and III secretion system protein JK088_14265 PF03958 Bacterial type II/III secretion system short domain JK088_14265 PF07660 Secretin and TonB N terminus short domain JK088_14285 PF00563 EAL domain JK088_14285 PF17157 Gammaproteobacterial periplasmic sensor domain JK088_14285 PF00990 Diguanylate cyclase, GGDEF domain JK088_14290 PF00436 Single-strand binding protein family JK088_14295 PF00196 Bacterial regulatory proteins, luxR family JK088_14300 PF00483 Nucleotidyl transferase JK088_14305 PF00005 ABC transporter JK088_14305 PF17755 UvrA DNA-binding domain JK088_14305 PF17760 UvrA interaction domain JK088_14315 PF00266 Aminotransferase class-V JK088_14320 PF00696 Amino acid kinase family JK088_14320 PF01842 ACT domain JK088_14325 PF00809 Pterin binding enzyme JK088_14325 PF02574 Homocysteine S-methyltransferase JK088_14325 PF02310 B12 binding domain JK088_14325 PF02607 B12 binding domain JK088_14325 PF02965 Vitamin B12 dependent methionine synthase, activation domain JK088_14330 PF00999 Sodium/hydrogen exchanger family JK088_14340 PF13358 DDE superfamily endonuclease JK088_14380 PF01507 Phosphoadenosine phosphosulfate reductase family JK088_14385 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JK088_14385 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JK088_14390 PF00667 FAD binding domain JK088_14390 PF00258 Flavodoxin JK088_14390 PF00175 Oxidoreductase NAD-binding domain JK088_14410 PF01207 Dihydrouridine synthase (Dus) JK088_14415 PF01475 Ferric uptake regulator family JK088_14425 PF00342 Phosphoglucose isomerase JK088_14430 PF01894 Uncharacterised protein family UPF0047 JK088_14440 PF00842 Alanine racemase, C-terminal domain JK088_14440 PF01168 Alanine racemase, N-terminal domain JK088_14445 PF00772 DnaB-like helicase N terminal domain JK088_14445 PF03796 DnaB-like helicase C terminal domain JK088_14455 PF03948 Ribosomal protein L9, C-terminal domain JK088_14455 PF01281 Ribosomal protein L9, N-terminal domain JK088_14460 PF01084 Ribosomal protein S18 JK088_14465 PF00436 Single-strand binding protein family JK088_14470 PF01250 Ribosomal protein S6 JK088_14475 PF00834 Ribulose-phosphate 3 epimerase family JK088_14480 PF02086 D12 class N6 adenine-specific DNA methyltransferase JK088_14490 PF01761 3-dehydroquinate synthase JK088_14495 PF01202 Shikimate kinase JK088_14500 PF11741 AMIN domain JK088_14500 PF03958 Bacterial type II/III secretion system short domain JK088_14500 PF00263 Bacterial type II and III secretion system protein JK088_14500 PF07660 Secretin and TonB N terminus short domain JK088_14505 PF04351 Pilus assembly protein, PilP JK088_14515 PF05137 Fimbrial assembly protein (PilN) JK088_14525 PF00912 Transglycosylase JK088_14525 PF00905 Penicillin binding protein transpeptidase domain JK088_14525 PF17092 Penicillin-binding protein OB-like domain JK088_14530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_14530 PF03466 LysR substrate binding domain JK088_14535 PF08534 Redoxin JK088_14535 PF00462 Glutaredoxin JK088_14545 PF00583 Acetyltransferase (GNAT) family JK088_14545 PF14698 Argininosuccinate lyase C-terminal JK088_14545 PF00206 Lyase JK088_14550 PF00764 Arginosuccinate synthase JK088_14555 PF00696 Amino acid kinase family JK088_14560 PF02774 Semialdehyde dehydrogenase, dimerisation domain JK088_14560 PF01118 Semialdehyde dehydrogenase, NAD binding domain JK088_14565 PF01546 Peptidase family M20/M25/M40 JK088_14565 PF07687 Peptidase dimerisation domain JK088_14570 PF00311 Phosphoenolpyruvate carboxylase JK088_14580 PF02219 Methylenetetrahydrofolate reductase JK088_14585 PF00696 Amino acid kinase family JK088_14585 PF00742 Homoserine dehydrogenase JK088_14585 PF03447 Homoserine dehydrogenase, NAD binding domain JK088_14590 PF01053 Cys/Met metabolism PLP-dependent enzyme JK088_14595 PF01340 Met Apo-repressor, MetJ JK088_14600 PF00390 Malic enzyme, N-terminal domain JK088_14600 PF03949 Malic enzyme, NAD binding domain JK088_14605 PF00210 Ferritin-like domain JK088_14610 PF04324 BFD-like [2Fe-2S] binding domain JK088_14615 PF00009 Elongation factor Tu GTP binding domain JK088_14615 PF03144 Elongation factor Tu domain 2 JK088_14615 PF03143 Elongation factor Tu C-terminal domain JK088_14620 PF00679 Elongation factor G C-terminus JK088_14620 PF14492 Elongation Factor G, domain II JK088_14620 PF00009 Elongation factor Tu GTP binding domain JK088_14620 PF03144 Elongation factor Tu domain 2 JK088_14620 PF03764 Elongation factor G, domain IV JK088_14625 PF00177 Ribosomal protein S7p/S5e JK088_14630 PF00164 Ribosomal protein S12/S23 JK088_14635 PF04077 DsrH like protein JK088_14640 PF02635 DsrE/DsrF-like family JK088_14645 PF02635 DsrE/DsrF-like family JK088_14650 PF08348 YheO-like PAS domain JK088_14650 PF13309 HTH domain JK088_14655 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JK088_14655 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JK088_14665 PF04102 SlyX JK088_14670 PF01112 Asparaginase JK088_14675 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JK088_14685 PF00999 Sodium/hydrogen exchanger family JK088_14685 PF02254 TrkA-N domain JK088_14690 PF02525 Flavodoxin-like fold JK088_14695 PF00005 ABC transporter JK088_14695 PF12848 ABC transporter JK088_14705 PF00561 alpha/beta hydrolase fold JK088_14710 PF06794 Uncharacterised protein family (UPF0270) JK088_14715 PF00485 Phosphoribulokinase / Uridine kinase family JK088_14720 PF00027 Cyclic nucleotide-binding domain JK088_14720 PF13545 Crp-like helix-turn-helix domain JK088_14730 PF00171 Aldehyde dehydrogenase family JK088_14735 PF04958 Arginine N-succinyltransferase beta subunit JK088_14740 PF00202 Aminotransferase class-III JK088_14745 PF00117 Glutamine amidotransferase class-I JK088_14760 PF00579 tRNA synthetases class I (W and Y) JK088_14765 PF13419 Haloacid dehalogenase-like hydrolase JK088_14770 PF00588 SpoU rRNA Methylase family JK088_14770 PF08032 RNA 2'-O ribose methyltransferase substrate binding JK088_14775 PF08461 Ribonuclease R winged-helix domain JK088_14775 PF17876 Cold shock domain JK088_14775 PF08206 Ribonuclease B OB domain JK088_14775 PF00575 S1 RNA binding domain JK088_14775 PF00773 RNB domain JK088_14780 PF02082 Transcriptional regulator JK088_14785 PF00970 Oxidoreductase FAD-binding domain JK088_14785 PF00042 Globin JK088_14785 PF00175 Oxidoreductase NAD-binding domain JK088_14790 PF08238 Sel1 repeat JK088_14795 PF00709 Adenylosuccinate synthetase JK088_14800 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) JK088_14805 PF01145 SPFH domain / Band 7 family JK088_14810 PF12221 Bacterial membrane protein N terminal JK088_14810 PF01145 SPFH domain / Band 7 family JK088_14815 PF01926 50S ribosome-binding GTPase JK088_14815 PF16360 GTP-binding GTPase Middle Region JK088_14815 PF13167 GTP-binding GTPase N-terminal JK088_14820 PF17209 Hfq protein JK088_14830 PF01119 DNA mismatch repair protein, C-terminal domain JK088_14830 PF08676 MutL C terminal dimerisation domain JK088_14835 PF01520 N-acetylmuramoyl-L-alanine amidase JK088_14840 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE JK088_14845 PF08331 Domain of unknown function (DUF1730) JK088_14925 PF00929 Exonuclease JK088_14930 PF03193 RsgA GTPase JK088_14935 PF02666 Phosphatidylserine decarboxylase JK088_14940 PF00939 Sodium:sulfate symporter transmembrane region JK088_14945 PF00239 Resolvase, N terminal domain JK088_14945 PF02796 Helix-turn-helix domain of resolvase JK088_14985 PF06415 BPG-independent PGAM N-terminus (iPGM_N) JK088_14985 PF01676 Metalloenzyme superfamily JK088_14990 PF00581 Rhodanese-like domain JK088_14995 PF02556 Preprotein translocase subunit SecB JK088_15000 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JK088_15000 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JK088_15005 PF00132 Bacterial transferase hexapeptide (six repeats) JK088_15005 PF06426 Serine acetyltransferase, N-terminal JK088_15010 PF01551 Peptidase family M23 JK088_15020 PF08360 QacR-like protein, C-terminal region JK088_15020 PF00440 Bacterial regulatory proteins, tetR family JK088_15030 PF00152 tRNA synthetases class II (D, K and N) JK088_15035 PF00890 FAD binding domain JK088_15035 PF02910 Fumarate reductase flavoprotein C-term JK088_15040 PF13183 4Fe-4S dicluster domain JK088_15040 PF13085 2Fe-2S iron-sulfur cluster binding domain JK088_15045 PF02300 Fumarate reductase subunit C JK088_15050 PF02313 Fumarate reductase subunit D JK088_15060 PF09285 Elongation factor P, C-terminal JK088_15060 PF01132 Elongation factor P (EF-P) OB domain JK088_15060 PF08207 Elongation factor P (EF-P) KOW-like domain JK088_15065 PF04055 Radical SAM superfamily JK088_15070 PF01168 Alanine racemase, N-terminal domain JK088_15070 PF00842 Alanine racemase, C-terminal domain JK088_15075 PF02308 MgtC family JK088_15085 PF00118 TCP-1/cpn60 chaperonin family JK088_15090 PF00166 Chaperonin 10 Kd subunit JK088_15095 PF01554 MatE JK088_15100 PF00365 Phosphofructokinase JK088_15105 PF01545 Cation efflux family JK088_15105 PF16916 Dimerisation domain of Zinc Transporter JK088_15110 PF07813 LTXXQ motif family protein JK088_15115 PF00072 Response regulator receiver domain JK088_15115 PF00486 Transcriptional regulatory protein, C terminal JK088_15120 PF16527 Two-component sensor protein CpxA, periplasmic domain JK088_15120 PF00672 HAMP domain JK088_15120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_15120 PF00512 His Kinase A (phospho-acceptor) domain JK088_15125 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JK088_15125 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JK088_15130 PF00588 SpoU rRNA Methylase family JK088_15135 PF04186 FxsA cytoplasmic membrane protein JK088_15140 PF10415 Fumarase C C-terminus JK088_15140 PF00206 Lyase JK088_15145 PF03605 Anaerobic c4-dicarboxylate membrane transporter JK088_15150 PF11412 Disulphide bond corrector protein DsbC JK088_15150 PF02683 Cytochrome C biogenesis protein transmembrane region JK088_15155 PF00196 Bacterial regulatory proteins, luxR family JK088_15155 PF00072 Response regulator receiver domain JK088_15160 PF03471 Transporter associated domain JK088_15160 PF00999 Sodium/hydrogen exchanger family JK088_15160 PF02080 TrkA-C domain JK088_15170 PF00474 Sodium:solute symporter family JK088_15185 PF10415 Fumarase C C-terminus JK088_15185 PF00206 Lyase JK088_15190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_15190 PF00512 His Kinase A (phospho-acceptor) domain JK088_15190 PF01627 Hpt domain JK088_15190 PF00072 Response regulator receiver domain JK088_15190 PF00672 HAMP domain JK088_15195 PF12832 MFS_1 like family JK088_15210 PF00501 AMP-binding enzyme JK088_15210 PF16177 Acetyl-coenzyme A synthetase N-terminus JK088_15210 PF13193 AMP-binding enzyme C-terminal domain JK088_15215 PF01220 Dehydroquinase class II JK088_15220 PF00364 Biotin-requiring enzyme JK088_15225 PF02785 Biotin carboxylase C-terminal domain JK088_15225 PF00289 Biotin carboxylase, N-terminal domain JK088_15225 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JK088_15235 PF01207 Dihydrouridine synthase (Dus) JK088_15240 PF02954 Bacterial regulatory protein, Fis family JK088_15245 PF07690 Major Facilitator Superfamily JK088_15250 PF12848 ABC transporter JK088_15250 PF00005 ABC transporter JK088_15255 PF05230 MASE2 domain JK088_15255 PF00990 Diguanylate cyclase, GGDEF domain JK088_15315 PF01177 Asp/Glu/Hydantoin racemase JK088_15325 PF07715 TonB-dependent Receptor Plug Domain JK088_15325 PF00593 TonB dependent receptor JK088_15330 PF05958 tRNA (Uracil-5-)-methyltransferase JK088_15340 PF00440 Bacterial regulatory proteins, tetR family JK088_15345 PF07992 Pyridine nucleotide-disulphide oxidoreductase JK088_15345 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JK088_15350 PF01554 MatE JK088_15355 PF04072 Leucine carboxyl methyltransferase JK088_15360 PF00717 Peptidase S24-like JK088_15360 PF01726 LexA DNA binding domain JK088_15365 PF01553 Acyltransferase JK088_15370 PF01040 UbiA prenyltransferase family JK088_15375 PF04345 Chorismate lyase JK088_15380 PF03748 Flagellar basal body-associated protein FliL JK088_15385 PF01694 Rhomboid family JK088_15385 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease JK088_15390 PF00581 Rhodanese-like domain JK088_15395 PF04542 Sigma-70 region 2 JK088_15395 PF04545 Sigma-70, region 4 JK088_15395 PF00140 Sigma-70 factor, region 1.2 JK088_15400 PF18075 FtsX extracellular domain JK088_15405 PF00005 ABC transporter JK088_15410 PF00448 SRP54-type protein, GTPase domain JK088_15410 PF02881 SRP54-type protein, helical bundle domain JK088_15425 PF01914 MarC family integral membrane protein JK088_15475 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JK088_15475 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JK088_15480 PF01022 Bacterial regulatory protein, arsR family JK088_15485 PF00563 EAL domain JK088_15485 PF08668 HDOD domain JK088_15490 PF01810 LysE type translocator JK088_15495 PF12146 Serine aminopeptidase, S33 JK088_15515 PF03942 DTW domain JK088_15520 PF10442 FIST C domain JK088_15520 PF08495 FIST N domain JK088_15520 PF00990 Diguanylate cyclase, GGDEF domain JK088_15520 PF00563 EAL domain JK088_15525 PF13419 Haloacid dehalogenase-like hydrolase JK088_15530 PF02899 Phage integrase, N-terminal SAM-like domain JK088_15530 PF00589 Phage integrase family JK088_15540 PF01678 Diaminopimelate epimerase JK088_15545 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JK088_15545 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JK088_15555 PF01491 Frataxin-like domain JK088_15560 PF12633 Adenylate cyclase NT domain JK088_15560 PF01295 Adenylate cyclase, class-I JK088_15565 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain JK088_15565 PF03900 Porphobilinogen deaminase, C-terminal domain JK088_15570 PF02602 Uroporphyrinogen-III synthase HemD JK088_15575 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase JK088_15580 PF07219 HemY protein N-terminus JK088_15615 PF00175 Oxidoreductase NAD-binding domain JK088_15620 PF00111 2Fe-2S iron-sulfur cluster binding domain JK088_15625 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase JK088_15635 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JK088_15635 PF07498 Rho termination factor, N-terminal domain JK088_15635 PF07497 Rho termination factor, RNA-binding domain JK088_15640 PF00085 Thioredoxin JK088_15645 PF00270 DEAD/DEAH box helicase JK088_15645 PF00271 Helicase conserved C-terminal domain JK088_15650 PF02541 Ppx/GppA phosphatase family JK088_15655 PF02592 Putative vitamin uptake transporter JK088_15665 PF09382 RQC domain JK088_15665 PF16124 RecQ zinc-binding JK088_15665 PF00270 DEAD/DEAH box helicase JK088_15665 PF00271 Helicase conserved C-terminal domain JK088_15665 PF00570 HRDC domain JK088_15670 PF00892 EamA-like transporter family JK088_15680 PF01810 LysE type translocator JK088_15690 PF00580 UvrD/REP helicase N-terminal domain JK088_15690 PF13361 UvrD-like helicase C-terminal domain JK088_15700 PF05114 Protein of unknown function (DUF692) JK088_15720 PF07690 Major Facilitator Superfamily JK088_15725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_15725 PF03466 LysR substrate binding domain JK088_15730 PF01321 Creatinase/Prolidase N-terminal domain JK088_15730 PF00557 Metallopeptidase family M24 JK088_15735 PF06968 Biotin and Thiamin Synthesis associated domain JK088_15735 PF04055 Radical SAM superfamily JK088_15740 PF05690 Thiazole biosynthesis protein ThiG JK088_15745 PF02597 ThiS family JK088_15750 PF00899 ThiF family JK088_15755 PF02581 Thiamine monophosphate synthase JK088_15760 PF13667 ThiC-associated domain JK088_15760 PF01964 Radical SAM ThiC family JK088_15765 PF02537 CrcB-like protein, Camphor Resistance (CrcB) JK088_15780 PF13358 DDE superfamily endonuclease JK088_15820 PF00132 Bacterial transferase hexapeptide (six repeats) JK088_15825 PF07369 Protein of unknown function (DUF1488) JK088_15830 PF08501 Shikimate dehydrogenase substrate binding domain JK088_15830 PF18317 Shikimate 5'-dehydrogenase C-terminal domain JK088_15830 PF01488 Shikimate / quinate 5-dehydrogenase JK088_15835 PF01218 Coproporphyrinogen III oxidase JK088_15840 PF01300 Telomere recombination JK088_15845 PF00731 AIR carboxylase JK088_15850 PF02222 ATP-grasp domain JK088_15850 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain JK088_15855 PF01396 Topoisomerase DNA binding C4 zinc finger JK088_15860 PF04361 Protein of unknown function (DUF494) JK088_15865 PF02481 DNA recombination-mediator protein A JK088_15865 PF17782 DprA winged helix domain JK088_15875 PF01327 Polypeptide deformylase JK088_15880 PF02911 Formyl transferase, C-terminal domain JK088_15880 PF00551 Formyl transferase JK088_15885 PF01189 16S rRNA methyltransferase RsmB/F JK088_15885 PF01029 NusB family JK088_15890 PF02254 TrkA-N domain JK088_15890 PF02080 TrkA-C domain JK088_15895 PF02386 Cation transport protein JK088_15905 PF03006 Haemolysin-III related JK088_15910 PF07070 SpoOM protein JK088_15920 PF06288 Protein of unknown function (DUF1040) JK088_15925 PF13746 4Fe-4S dicluster domain JK088_15925 PF12801 4Fe-4S binding domain JK088_15925 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase JK088_15930 PF01636 Phosphotransferase enzyme family JK088_15935 PF01323 DSBA-like thioredoxin domain JK088_15940 PF01553 Acyltransferase JK088_15950 PF13335 Magnesium chelatase, subunit ChlI C-terminal JK088_15950 PF01078 Magnesium chelatase, subunit ChlI JK088_15955 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JK088_15955 PF00205 Thiamine pyrophosphate enzyme, central domain JK088_15955 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JK088_15965 PF01063 Amino-transferase class IV JK088_15970 PF00920 Dehydratase family JK088_15975 PF00291 Pyridoxal-phosphate dependent enzyme JK088_15975 PF00585 C-terminal regulatory domain of Threonine dehydratase JK088_15980 PF03466 LysR substrate binding domain JK088_15980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_15985 PF07690 Major Facilitator Superfamily JK088_15990 PF00497 Bacterial extracellular solute-binding proteins, family 3 JK088_15995 PF00528 Binding-protein-dependent transport system inner membrane component JK088_16000 PF00132 Bacterial transferase hexapeptide (six repeats) JK088_16000 PF12804 MobA-like NTP transferase domain JK088_16005 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain JK088_16005 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain JK088_16010 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JK088_16010 PF02874 ATP synthase alpha/beta family, beta-barrel domain JK088_16015 PF00231 ATP synthase JK088_16020 PF02874 ATP synthase alpha/beta family, beta-barrel domain JK088_16020 PF00306 ATP synthase alpha/beta chain, C terminal domain JK088_16020 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JK088_16025 PF00213 ATP synthase delta (OSCP) subunit JK088_16030 PF00430 ATP synthase B/B' CF(0) JK088_16035 PF00137 ATP synthase subunit C JK088_16040 PF00119 ATP synthase A chain JK088_16045 PF03899 ATP synthase I chain JK088_16050 PF17762 HTH domain found in ParB protein JK088_16050 PF02195 ParB-like nuclease domain JK088_16055 PF13614 AAA domain JK088_16060 PF02527 rRNA small subunit methyltransferase G JK088_16065 PF13932 GidA associated domain JK088_16065 PF01134 Glucose inhibited division protein A JK088_16070 PF00258 Flavodoxin JK088_16075 PF01926 50S ribosome-binding GTPase JK088_16075 PF12631 MnmE helical domain JK088_16075 PF10396 GTP-binding protein TrmE N-terminus JK088_16080 PF02096 60Kd inner membrane protein JK088_16080 PF14849 YidC periplasmic domain JK088_16085 PF01809 Putative membrane protein insertion efficiency factor JK088_16090 PF00825 Ribonuclease P JK088_16095 PF00468 Ribosomal protein L34 JK088_16100 PF00005 ABC transporter JK088_16105 PF00528 Binding-protein-dependent transport system inner membrane component JK088_16110 PF00497 Bacterial extracellular solute-binding proteins, family 3 JK088_16115 PF00199 Catalase JK088_16115 PF06628 Catalase-related immune-responsive JK088_16125 PF00857 Isochorismatase family JK088_16135 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family JK088_16135 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain JK088_16160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_16160 PF03466 LysR substrate binding domain JK088_16165 PF00691 OmpA family JK088_16165 PF01389 OmpA-like transmembrane domain JK088_16175 PF06629 MltA-interacting protein MipA JK088_16180 PF04170 NlpE N-terminal domain JK088_16180 PF17185 NlpE C-terminal OB domain JK088_16185 PF02001 Protein of unknown function DUF134 JK088_16210 PF00679 Elongation factor G C-terminus JK088_16210 PF14492 Elongation Factor G, domain II JK088_16210 PF03764 Elongation factor G, domain IV JK088_16210 PF00009 Elongation factor Tu GTP binding domain JK088_16210 PF03144 Elongation factor Tu domain 2 JK088_16215 PF13378 Enolase C-terminal domain-like JK088_16215 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JK088_16225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_16225 PF03466 LysR substrate binding domain JK088_16235 PF00376 MerR family regulatory protein JK088_16235 PF09278 MerR, DNA binding JK088_16260 PF13091 PLD-like domain JK088_16265 PF13533 Biotin-lipoyl like JK088_16270 PF00873 AcrB/AcrD/AcrF family JK088_16295 PF00005 ABC transporter JK088_16295 PF08402 TOBE domain JK088_16320 PF07702 UTRA domain JK088_16320 PF00392 Bacterial regulatory proteins, gntR family JK088_16325 PF02028 BCCT, betaine/carnitine/choline family transporter JK088_16330 PF00703 Glycosyl hydrolases family 2 JK088_16330 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 JK088_16330 PF02837 Glycosyl hydrolases family 2, sugar binding domain JK088_16330 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JK088_16335 PF00196 Bacterial regulatory proteins, luxR family JK088_16345 PF07694 5TMR of 5TMR-LYT JK088_16345 PF00990 Diguanylate cyclase, GGDEF domain JK088_16360 PF00873 AcrB/AcrD/AcrF family JK088_16365 PF13533 Biotin-lipoyl like JK088_16370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_16370 PF03466 LysR substrate binding domain JK088_16380 PF13416 Bacterial extracellular solute-binding protein JK088_16385 PF00579 tRNA synthetases class I (W and Y) JK088_16400 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JK088_16400 PF02896 PEP-utilising enzyme, TIM barrel domain JK088_16400 PF00391 PEP-utilising enzyme, mobile domain JK088_16405 PF03618 Kinase/pyrophosphorylase JK088_16410 PF00710 Asparaginase, N-terminal JK088_16410 PF17763 Glutaminase/Asparaginase C-terminal domain JK088_16415 PF00709 Adenylosuccinate synthetase JK088_16420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_16420 PF03466 LysR substrate binding domain JK088_16435 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) JK088_16440 PF12833 Helix-turn-helix domain JK088_16440 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JK088_16455 PF00107 Zinc-binding dehydrogenase JK088_16455 PF08240 Alcohol dehydrogenase GroES-like domain JK088_16460 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JK088_16470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_16470 PF03466 LysR substrate binding domain JK088_16475 PF03466 LysR substrate binding domain JK088_16475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_16485 PF00271 Helicase conserved C-terminal domain JK088_16485 PF00270 DEAD/DEAH box helicase JK088_16500 PF00535 Glycosyl transferase family 2 JK088_16525 PF00155 Aminotransferase class I and II JK088_16530 PF12833 Helix-turn-helix domain JK088_16530 PF01497 Periplasmic binding protein JK088_16560 PF05661 Protein of unknown function (DUF808) JK088_16565 PF01979 Amidohydrolase family JK088_16570 PF01679 Proteolipid membrane potential modulator JK088_16575 PF00111 2Fe-2S iron-sulfur cluster binding domain JK088_16575 PF03473 MOSC domain JK088_16575 PF03476 MOSC N-terminal beta barrel domain JK088_16575 PF00111 2Fe-2S iron-sulfur cluster binding domain JK088_16575 PF03473 MOSC domain JK088_16575 PF03476 MOSC N-terminal beta barrel domain JK088_16580 PF02540 NAD synthase JK088_16585 PF01467 Cytidylyltransferase-like JK088_16625 PF00005 ABC transporter JK088_16630 PF01032 FecCD transport family JK088_16640 PF02472 Biopolymer transport protein ExbD/TolR JK088_16645 PF01618 MotA/TolQ/ExbB proton channel family JK088_16650 PF03544 Gram-negative bacterial TonB protein C-terminal JK088_16655 PF04055 Radical SAM superfamily JK088_16660 PF06228 Haem utilisation ChuX/HutX JK088_16665 PF01243 Pyridoxamine 5'-phosphate oxidase JK088_16675 PF00072 Response regulator receiver domain JK088_16675 PF01584 CheW-like domain JK088_16690 PF13087 AAA domain JK088_16690 PF13091 PLD-like domain JK088_16695 PF00082 Subtilase family JK088_16715 PF00141 Peroxidase JK088_16720 PF00210 Ferritin-like domain JK088_16725 PF03466 LysR substrate binding domain JK088_16725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_16740 PF01752 Collagenase JK088_16740 PF08453 Peptidase family M9 N-terminal JK088_16740 PF04151 Bacterial pre-peptidase C-terminal domain JK088_16750 PF00128 Alpha amylase, catalytic domain JK088_16765 PF00999 Sodium/hydrogen exchanger family JK088_16765 PF02254 TrkA-N domain JK088_16770 PF02525 Flavodoxin-like fold JK088_16775 PF00582 Universal stress protein family JK088_16780 PF00005 ABC transporter JK088_16780 PF16326 ABC transporter C-terminal domain JK088_16780 PF12848 ABC transporter JK088_16785 PF00326 Prolyl oligopeptidase family JK088_16785 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JK088_16795 PF13533 Biotin-lipoyl like JK088_16800 PF00873 AcrB/AcrD/AcrF family JK088_16805 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JK088_16815 PF13302 Acetyltransferase (GNAT) domain JK088_16825 PF00990 Diguanylate cyclase, GGDEF domain JK088_16835 PF00175 Oxidoreductase NAD-binding domain JK088_16835 PF00111 2Fe-2S iron-sulfur cluster binding domain JK088_16835 PF00970 Oxidoreductase FAD-binding domain JK088_16845 PF00873 AcrB/AcrD/AcrF family JK088_16865 PF01568 Molydopterin dinucleotide binding domain JK088_16865 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JK088_16865 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JK088_16865 PF12838 4Fe-4S dicluster domain JK088_16865 PF00384 Molybdopterin oxidoreductase JK088_16885 PF00005 ABC transporter JK088_16895 PF00672 HAMP domain JK088_16895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JK088_16900 PF10282 Lactonase, 7-bladed beta-propeller JK088_16905 PF02567 Phenazine biosynthesis-like protein JK088_16910 PF01161 Phosphatidylethanolamine-binding protein JK088_16920 PF01758 Sodium Bile acid symporter family JK088_16935 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JK088_16940 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JK088_16940 PF02378 Phosphotransferase system, EIIC JK088_16945 PF08240 Alcohol dehydrogenase GroES-like domain JK088_16945 PF00107 Zinc-binding dehydrogenase JK088_16980 PF03222 Tryptophan/tyrosine permease family JK088_16990 PF02743 Cache domain JK088_16990 PF00672 HAMP domain JK088_16990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JK088_16995 PF07670 Nucleoside recognition JK088_17015 PF08525 Opacity-associated protein A N-terminal motif JK088_17015 PF01476 LysM domain JK088_17015 PF01551 Peptidase family M23 JK088_17020 PF08448 PAS fold JK088_17020 PF00990 Diguanylate cyclase, GGDEF domain JK088_17020 PF00563 EAL domain JK088_17020 PF08447 PAS fold JK088_17025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_17025 PF03466 LysR substrate binding domain JK088_17030 PF07690 Major Facilitator Superfamily JK088_17040 PF00462 Glutaredoxin JK088_17045 PF00892 EamA-like transporter family JK088_17050 PF00267 Gram-negative porin JK088_17060 PF01557 Fumarylacetoacetate (FAA) hydrolase family JK088_17075 PF12833 Helix-turn-helix domain JK088_17080 PF01810 LysE type translocator JK088_17090 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JK088_17090 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JK088_17090 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JK088_17090 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JK088_17095 PF02790 Cytochrome C oxidase subunit II, transmembrane domain JK088_17095 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JK088_17100 PF00115 Cytochrome C and Quinol oxidase polypeptide I JK088_17105 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 JK088_17110 PF00510 Cytochrome c oxidase subunit III JK088_17130 PF02628 Cytochrome oxidase assembly protein JK088_17135 PF01040 UbiA prenyltransferase family JK088_17140 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JK088_17140 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JK088_17170 PF00313 'Cold-shock' DNA-binding domain JK088_17175 PF03889 Alternative ribosome-rescue factor A JK088_17180 PF08447 PAS fold JK088_17180 PF13426 PAS domain JK088_17180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JK088_17185 PF00990 Diguanylate cyclase, GGDEF domain JK088_17200 PF00005 ABC transporter JK088_17200 PF12704 MacB-like periplasmic core domain JK088_17200 PF02687 FtsX-like permease family JK088_17205 PF12704 MacB-like periplasmic core domain JK088_17205 PF02687 FtsX-like permease family JK088_17205 PF00005 ABC transporter JK088_17215 PF17200 Single Cache domain 2 JK088_17215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JK088_17215 PF00672 HAMP domain JK088_17220 PF00210 Ferritin-like domain JK088_17230 PF07995 Glucose / Sorbosone dehydrogenase JK088_17235 PF00465 Iron-containing alcohol dehydrogenase JK088_17250 PF00892 EamA-like transporter family JK088_17275 PF03466 LysR substrate binding domain JK088_17275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_17285 PF00501 AMP-binding enzyme JK088_17285 PF13193 AMP-binding enzyme C-terminal domain JK088_17290 PF00351 Biopterin-dependent aromatic amino acid hydroxylase JK088_17295 PF01329 Pterin 4 alpha carbinolamine dehydratase JK088_17315 PF12843 Putative quorum-sensing-regulated virulence factor JK088_17320 PF00271 Helicase conserved C-terminal domain JK088_17320 PF00270 DEAD/DEAH box helicase JK088_17325 PF09905 DNA-binding protein VF530 JK088_17330 PF00291 Pyridoxal-phosphate dependent enzyme JK088_17340 PF01470 Pyroglutamyl peptidase JK088_17350 PF02492 CobW/HypB/UreG, nucleotide-binding domain JK088_17350 PF07683 Cobalamin synthesis protein cobW C-terminal domain JK088_17355 PF00271 Helicase conserved C-terminal domain JK088_17355 PF00270 DEAD/DEAH box helicase JK088_17375 PF00563 EAL domain JK088_17375 PF12792 CSS motif domain associated with EAL JK088_17380 PF00005 ABC transporter JK088_17385 PF00672 HAMP domain JK088_17385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JK088_17385 PF12729 Four helix bundle sensory module for signal transduction JK088_17395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_17395 PF03466 LysR substrate binding domain JK088_17400 PF00884 Sulfatase JK088_17405 PF04055 Radical SAM superfamily JK088_17405 PF13186 Iron-sulfur cluster-binding domain JK088_17410 PF03466 LysR substrate binding domain JK088_17410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_17420 PF01575 MaoC like domain JK088_17435 PF12833 Helix-turn-helix domain JK088_17440 PF00575 S1 RNA binding domain JK088_17440 PF08206 Ribonuclease B OB domain JK088_17440 PF00773 RNB domain JK088_17445 PF03880 DbpA RNA binding domain JK088_17445 PF00270 DEAD/DEAH box helicase JK088_17445 PF00271 Helicase conserved C-terminal domain JK088_17450 PF00563 EAL domain JK088_17450 PF00990 Diguanylate cyclase, GGDEF domain JK088_17450 PF13426 PAS domain JK088_17455 PF00871 Acetokinase family JK088_17460 PF08447 PAS fold JK088_17460 PF13426 PAS domain JK088_17460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JK088_17470 PF10063 Uncharacterized integral membrane protein (DUF2301) JK088_17475 PF00682 HMGL-like JK088_17480 PF00378 Enoyl-CoA hydratase/isomerase JK088_17485 PF01039 Carboxyl transferase domain JK088_17490 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JK088_17490 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JK088_17490 PF02770 Acyl-CoA dehydrogenase, middle domain JK088_17495 PF00376 MerR family regulatory protein JK088_17495 PF09278 MerR, DNA binding JK088_17500 PF02803 Thiolase, C-terminal domain JK088_17500 PF00108 Thiolase, N-terminal domain JK088_17505 PF00171 Aldehyde dehydrogenase family JK088_17510 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JK088_17510 PF02770 Acyl-CoA dehydrogenase, middle domain JK088_17510 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JK088_17515 PF00378 Enoyl-CoA hydratase/isomerase JK088_17520 PF00378 Enoyl-CoA hydratase/isomerase JK088_17525 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JK088_17525 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JK088_17535 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JK088_17535 PF06481 COX Aromatic Rich Motif JK088_17540 PF00115 Cytochrome C and Quinol oxidase polypeptide I JK088_17545 PF00510 Cytochrome c oxidase subunit III JK088_17555 PF01040 UbiA prenyltransferase family JK088_17560 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JK088_17565 PF08031 Berberine and berberine like JK088_17565 PF01565 FAD binding domain JK088_17570 PF00005 ABC transporter JK088_17575 PF00497 Bacterial extracellular solute-binding proteins, family 3 JK088_17580 PF00528 Binding-protein-dependent transport system inner membrane component JK088_17585 PF00528 Binding-protein-dependent transport system inner membrane component JK088_17595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_17595 PF03466 LysR substrate binding domain JK088_17600 PF02798 Glutathione S-transferase, N-terminal domain JK088_17600 PF00043 Glutathione S-transferase, C-terminal domain JK088_17610 PF00364 Biotin-requiring enzyme JK088_17610 PF02817 e3 binding domain JK088_17610 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JK088_17615 PF02779 Transketolase, pyrimidine binding domain JK088_17615 PF02780 Transketolase, C-terminal domain JK088_17620 PF00676 Dehydrogenase E1 component JK088_17635 PF00012 Hsp70 protein JK088_17640 PF04314 Copper chaperone PCu(A)C JK088_17660 PF01497 Periplasmic binding protein JK088_17665 PF01032 FecCD transport family JK088_17670 PF01032 FecCD transport family JK088_17675 PF00005 ABC transporter JK088_17690 PF07715 TonB-dependent Receptor Plug Domain JK088_17690 PF00593 TonB dependent receptor JK088_17720 PF12805 FUSC-like inner membrane protein yccS JK088_17725 PF13361 UvrD-like helicase C-terminal domain JK088_17725 PF12462 DNA helicase IV / RNA helicase N terminal JK088_17725 PF00580 UvrD/REP helicase N-terminal domain JK088_17730 PF02142 MGS-like domain JK088_17735 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JK088_17740 PF01627 Hpt domain JK088_17740 PF00072 Response regulator receiver domain JK088_17740 PF00512 His Kinase A (phospho-acceptor) domain JK088_17740 PF00672 HAMP domain JK088_17740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_17755 PF00486 Transcriptional regulatory protein, C terminal JK088_17755 PF00072 Response regulator receiver domain JK088_17760 PF16385 Domain of unknown function JK088_17760 PF00884 Sulfatase JK088_17765 PF00884 Sulfatase JK088_17775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_17775 PF03466 LysR substrate binding domain JK088_17780 PF00884 Sulfatase JK088_17785 PF04055 Radical SAM superfamily JK088_17785 PF13186 Iron-sulfur cluster-binding domain JK088_17790 PF07726 ATPase family associated with various cellular activities (AAA) JK088_17790 PF17863 AAA lid domain JK088_17805 PF00092 von Willebrand factor type A domain JK088_17820 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JK088_17825 PF03466 LysR substrate binding domain JK088_17825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_17830 PF00781 Diacylglycerol kinase catalytic domain JK088_17835 PF04076 Bacterial OB fold (BOF) protein JK088_17850 PF04055 Radical SAM superfamily JK088_17850 PF13186 Iron-sulfur cluster-binding domain JK088_17860 PF18081 Fanconi anemia-associated nuclease SAP domain JK088_17860 PF08774 VRR-NUC domain JK088_17875 PF01435 Peptidase family M48 JK088_17880 PF04011 LemA family JK088_17885 PF03606 C4-dicarboxylate anaerobic carrier JK088_17895 PF00814 Glycoprotease family JK088_17895 PF00583 Acetyltransferase (GNAT) family JK088_17905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_17905 PF00072 Response regulator receiver domain JK088_17910 PF00155 Aminotransferase class I and II JK088_17915 PF01926 50S ribosome-binding GTPase JK088_17920 PF03466 LysR substrate binding domain JK088_17920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_17925 PF00884 Sulfatase JK088_17930 PF04055 Radical SAM superfamily JK088_17930 PF13186 Iron-sulfur cluster-binding domain JK088_17965 PF04002 RadC-like JAB domain JK088_17975 PF00356 Bacterial regulatory proteins, lacI family JK088_17975 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JK088_17985 PF00474 Sodium:solute symporter family JK088_17990 PF00920 Dehydratase family JK088_17995 PF03328 HpcH/HpaI aldolase/citrate lyase family JK088_18005 PF08450 SMP-30/Gluconolactonase/LRE-like region JK088_18010 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JK088_18010 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JK088_18035 PF00465 Iron-containing alcohol dehydrogenase JK088_18040 PF00596 Class II Aldolase and Adducin N-terminal domain JK088_18045 PF06134 L-rhamnose isomerase (RhaA) JK088_18050 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JK088_18055 PF05336 L-rhamnose mutarotase JK088_18065 PF12833 Helix-turn-helix domain JK088_18065 PF02311 AraC-like ligand binding domain JK088_18100 PF08240 Alcohol dehydrogenase GroES-like domain JK088_18100 PF00107 Zinc-binding dehydrogenase JK088_18105 PF13292 1-deoxy-D-xylulose-5-phosphate synthase JK088_18105 PF02779 Transketolase, pyrimidine binding domain JK088_18105 PF02780 Transketolase, C-terminal domain JK088_18110 PF00456 Transketolase, thiamine diphosphate binding domain JK088_18115 PF00465 Iron-containing alcohol dehydrogenase JK088_18120 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JK088_18120 PF07992 Pyridine nucleotide-disulphide oxidoreductase JK088_18125 PF02311 AraC-like ligand binding domain JK088_18125 PF12833 Helix-turn-helix domain JK088_18130 PF08240 Alcohol dehydrogenase GroES-like domain JK088_18130 PF00107 Zinc-binding dehydrogenase JK088_18140 PF13086 AAA domain JK088_18140 PF13087 AAA domain JK088_18140 PF13195 Protein of unknown function (DUF4011) JK088_18140 PF13086 AAA domain JK088_18140 PF13087 AAA domain JK088_18140 PF13195 Protein of unknown function (DUF4011) JK088_18145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_18145 PF03466 LysR substrate binding domain JK088_18165 PF04972 BON domain JK088_18165 PF00263 Bacterial type II and III secretion system protein JK088_18165 PF13629 Pilus formation protein N terminal region JK088_18175 PF10609 NUBPL iron-transfer P-loop NTPase JK088_18180 PF00437 Type II/IV secretion system protein JK088_18215 PF00691 OmpA family JK088_18215 PF13488 Glycine zipper JK088_18250 PF04055 Radical SAM superfamily JK088_18250 PF13186 Iron-sulfur cluster-binding domain JK088_18255 PF02264 LamB porin JK088_18260 PF07470 Glycosyl Hydrolase Family 88 JK088_18265 PF00474 Sodium:solute symporter family JK088_18270 PF04962 KduI/IolB family JK088_18280 PF00294 pfkB family carbohydrate kinase JK088_18285 PF01081 KDPG and KHG aldolase JK088_18300 PF00884 Sulfatase JK088_18300 PF16347 Domain of unknown function (DUF4976) JK088_18305 PF02656 Domain of unknown function (DUF202) JK088_18315 PF01867 CRISPR associated protein Cas1 JK088_18320 PF18019 HD domain JK088_18325 PF09611 CRISPR-associated protein (Cas_Csy1) JK088_18330 PF09614 CRISPR-associated protein (Cas_Csy2) JK088_18335 PF09615 CRISPR-associated protein (Cas_Csy3) JK088_18350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JK088_18355 PF00563 EAL domain JK088_18355 PF08668 HDOD domain JK088_18365 PF17128 Domain of unknown function (DUF5107) JK088_18365 PF13181 Tetratricopeptide repeat JK088_18370 PF00083 Sugar (and other) transporter JK088_18380 PF00480 ROK family JK088_18385 PF02872 5'-nucleotidase, C-terminal domain JK088_18385 PF00149 Calcineurin-like phosphoesterase JK088_18410 PF13737 Transposase DDE domain JK088_18425 PF00293 NUDIX domain JK088_18450 PF00589 Phage integrase family JK088_18450 PF13356 Arm DNA-binding domain JK088_18465 PF01752 Collagenase JK088_18465 PF08453 Peptidase family M9 N-terminal JK088_18465 PF04151 Bacterial pre-peptidase C-terminal domain JK088_18475 PF12833 Helix-turn-helix domain JK088_18480 PF03466 LysR substrate binding domain JK088_18480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_18500 PF13629 Pilus formation protein N terminal region JK088_18500 PF00263 Bacterial type II and III secretion system protein JK088_18500 PF04972 BON domain JK088_18515 PF00437 Type II/IV secretion system protein JK088_18550 PF05736 OprF membrane domain JK088_18550 PF00691 OmpA family JK088_18560 PF03466 LysR substrate binding domain JK088_18560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_18565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_18565 PF03466 LysR substrate binding domain JK088_18575 PF00512 His Kinase A (phospho-acceptor) domain JK088_18575 PF00072 Response regulator receiver domain JK088_18575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_18575 PF09456 RcsC Alpha-Beta-Loop (ABL) JK088_18580 PF13188 PAS domain JK088_18580 PF00990 Diguanylate cyclase, GGDEF domain JK088_18580 PF00563 EAL domain JK088_18580 PF03707 Bacterial signalling protein N terminal repeat JK088_18585 PF00196 Bacterial regulatory proteins, luxR family JK088_18585 PF00072 Response regulator receiver domain JK088_18590 PF00990 Diguanylate cyclase, GGDEF domain JK088_18600 PF00196 Bacterial regulatory proteins, luxR family JK088_18600 PF00072 Response regulator receiver domain JK088_18620 PF00072 Response regulator receiver domain JK088_18620 PF01584 CheW-like domain JK088_18635 PF00892 EamA-like transporter family JK088_18645 PF01569 PAP2 superfamily JK088_18655 PF01447 Thermolysin metallopeptidase, catalytic domain JK088_18655 PF03413 Peptidase propeptide and YPEB domain JK088_18655 PF02868 Thermolysin metallopeptidase, alpha-helical domain JK088_18655 PF04151 Bacterial pre-peptidase C-terminal domain JK088_18655 PF07504 Fungalysin/Thermolysin Propeptide Motif JK088_18660 PF00893 Small Multidrug Resistance protein JK088_18665 PF00892 EamA-like transporter family JK088_18685 PF00171 Aldehyde dehydrogenase family JK088_18690 PF00939 Sodium:sulfate symporter transmembrane region JK088_18695 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain JK088_18695 PF17203 Single cache domain 3 JK088_18695 PF00989 PAS fold JK088_18695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_18700 PF12431 Transcriptional regulator JK088_18700 PF00072 Response regulator receiver domain JK088_18710 PF13187 4Fe-4S dicluster domain JK088_18710 PF01645 Conserved region in glutamate synthase JK088_18715 PF00141 Peroxidase JK088_18720 PF09722 Protein of unknown function (DUF2384) JK088_18730 PF01757 Acyltransferase family JK088_18740 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JK088_18745 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JK088_18765 PF00571 CBS domain JK088_18765 PF01769 Divalent cation transporter JK088_18765 PF03448 MgtE intracellular N domain JK088_18795 PF01327 Polypeptide deformylase JK088_18800 PF00376 MerR family regulatory protein JK088_18800 PF09278 MerR, DNA binding JK088_18810 PF02253 Phospholipase A1 JK088_18830 PF00664 ABC transporter transmembrane region JK088_18830 PF00005 ABC transporter JK088_18840 PF07733 Bacterial DNA polymerase III alpha NTPase domain JK088_18840 PF00929 Exonuclease JK088_18840 PF02811 PHP domain JK088_18840 PF14579 Helix-hairpin-helix motif JK088_18840 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JK088_18840 PF11490 DNA polymerase III polC-type N-terminus II JK088_18845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_18845 PF03466 LysR substrate binding domain JK088_18850 PF17848 Acetyl-coA carboxylase zinc finger domain JK088_18850 PF01039 Carboxyl transferase domain JK088_18885 PF02347 Glycine cleavage system P-protein JK088_18890 PF01597 Glycine cleavage H-protein JK088_18895 PF00464 Serine hydroxymethyltransferase JK088_18905 PF08669 Glycine cleavage T-protein C-terminal barrel domain JK088_18905 PF01571 Aminomethyltransferase folate-binding domain JK088_18925 PF00873 AcrB/AcrD/AcrF family JK088_18935 PF02378 Phosphotransferase system, EIIC JK088_18935 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JK088_18940 PF00294 pfkB family carbohydrate kinase JK088_18945 PF00381 PTS HPr component phosphorylation site JK088_18945 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JK088_18950 PF00356 Bacterial regulatory proteins, lacI family JK088_18950 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JK088_18965 PF00990 Diguanylate cyclase, GGDEF domain JK088_18965 PF01590 GAF domain JK088_18965 PF00989 PAS fold JK088_18965 PF00563 EAL domain JK088_18970 PF00528 Binding-protein-dependent transport system inner membrane component JK088_18975 PF00497 Bacterial extracellular solute-binding proteins, family 3 JK088_18980 PF00528 Binding-protein-dependent transport system inner membrane component JK088_18985 PF00005 ABC transporter JK088_18990 PF02887 Pyruvate kinase, alpha/beta domain JK088_18990 PF00224 Pyruvate kinase, barrel domain JK088_18995 PF07690 Major Facilitator Superfamily JK088_19005 PF00512 His Kinase A (phospho-acceptor) domain JK088_19005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_19005 PF00672 HAMP domain JK088_19010 PF00072 Response regulator receiver domain JK088_19010 PF02954 Bacterial regulatory protein, Fis family JK088_19010 PF14532 Sigma-54 interaction domain JK088_19020 PF00465 Iron-containing alcohol dehydrogenase JK088_19025 PF06719 AraC-type transcriptional regulator N-terminus JK088_19025 PF12833 Helix-turn-helix domain JK088_19030 PF06483 Chitinase C JK088_19030 PF00704 Glycosyl hydrolases family 18 JK088_19035 PF00483 Nucleotidyl transferase JK088_19040 PF01268 Formate--tetrahydrofolate ligase JK088_19045 PF00294 pfkB family carbohydrate kinase JK088_19060 PF11849 Domain of unknown function (DUF3369) JK088_19065 PF13419 Haloacid dehalogenase-like hydrolase JK088_19070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JK088_19075 PF04336 Acyl carrier protein phosphodiesterase JK088_19080 PF00270 DEAD/DEAH box helicase JK088_19080 PF00271 Helicase conserved C-terminal domain JK088_19085 PF00563 EAL domain JK088_19085 PF12792 CSS motif domain associated with EAL JK088_19100 PF01292 Prokaryotic cytochrome b561 JK088_19105 PF04264 YceI-like domain JK088_19110 PF01226 Formate/nitrite transporter JK088_19115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_19115 PF03466 LysR substrate binding domain JK088_19120 PF06496 Protein of unknown function (DUF1097) JK088_19125 PF11398 Protein of unknown function (DUF2813) JK088_19130 PF02872 5'-nucleotidase, C-terminal domain JK088_19130 PF00149 Calcineurin-like phosphoesterase JK088_19135 PF03741 Integral membrane protein TerC family JK088_19150 PF12262 Bacterial virulence factor lipase N-terminal JK088_19155 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JK088_19170 PF03061 Thioesterase superfamily JK088_19180 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JK088_19180 PF12793 Sugar transport-related sRNA regulator N-term JK088_19205 PF00684 DnaJ central domain JK088_19205 PF00226 DnaJ domain JK088_19205 PF01556 DnaJ C terminal domain JK088_19215 PF03707 Bacterial signalling protein N terminal repeat JK088_19215 PF00563 EAL domain JK088_19215 PF13188 PAS domain JK088_19215 PF00990 Diguanylate cyclase, GGDEF domain JK088_19220 PF07055 Enoyl reductase FAD binding domain JK088_19220 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase JK088_19220 PF12241 Trans-2-enoyl-CoA reductase catalytic region JK088_19225 PF13472 GDSL-like Lipase/Acylhydrolase family JK088_19230 PF00005 ABC transporter JK088_19245 PF02626 Carboxyltransferase domain, subdomain A and B JK088_19250 PF02682 Carboxyltransferase domain, subdomain C and D JK088_19255 PF03746 LamB/YcsF family JK088_19260 PF00563 EAL domain JK088_19260 PF00990 Diguanylate cyclase, GGDEF domain JK088_19260 PF05231 MASE1 JK088_19260 PF08447 PAS fold JK088_19260 PF13426 PAS domain JK088_19260 PF08448 PAS fold JK088_19265 PF16363 GDP-mannose 4,6 dehydratase JK088_19270 PF00593 TonB dependent receptor JK088_19270 PF07715 TonB-dependent Receptor Plug Domain JK088_19275 PF03466 LysR substrate binding domain JK088_19275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_19280 PF00583 Acetyltransferase (GNAT) family JK088_19280 PF13380 CoA binding domain JK088_19280 PF13607 Succinyl-CoA ligase like flavodoxin domain JK088_19290 PF01820 D-ala D-ala ligase N-terminus JK088_19290 PF07478 D-ala D-ala ligase C-terminus JK088_19300 PF01253 Translation initiation factor SUI1 JK088_19350 PF05707 Zonular occludens toxin (Zot) JK088_19375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_19375 PF03466 LysR substrate binding domain JK088_19385 PF00582 Universal stress protein family JK088_19390 PF03701 Uncharacterised protein family (UPF0181) JK088_19405 PF00486 Transcriptional regulatory protein, C terminal JK088_19405 PF00072 Response regulator receiver domain JK088_19415 PF02233 NAD(P) transhydrogenase beta subunit JK088_19420 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JK088_19420 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch JK088_19420 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JK088_19435 PF00990 Diguanylate cyclase, GGDEF domain JK088_19445 PF00360 Phytochrome region JK088_19445 PF00563 EAL domain JK088_19445 PF00990 Diguanylate cyclase, GGDEF domain JK088_19445 PF01590 GAF domain JK088_19455 PF00005 ABC transporter JK088_19455 PF03459 TOBE domain JK088_19460 PF00528 Binding-protein-dependent transport system inner membrane component JK088_19470 PF07685 CobB/CobQ-like glutamine amidotransferase domain JK088_19475 PF04076 Bacterial OB fold (BOF) protein JK088_19485 PF18030 RimK PreATP-grasp domain JK088_19485 PF08443 RimK-like ATP-grasp domain JK088_19490 PF00155 Aminotransferase class I and II JK088_19495 PF12833 Helix-turn-helix domain JK088_19500 PF01554 MatE JK088_19510 PF13597 Anaerobic ribonucleoside-triphosphate reductase JK088_19510 PF03477 ATP cone domain JK088_19520 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JK088_19525 PF00873 AcrB/AcrD/AcrF family JK088_19535 PF04143 Sulphur transport JK088_19550 PF07992 Pyridine nucleotide-disulphide oxidoreductase JK088_19550 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JK088_19555 PF00384 Molybdopterin oxidoreductase JK088_19560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_19560 PF03466 LysR substrate binding domain JK088_19565 PF02634 FdhD/NarQ family JK088_19570 PF07690 Major Facilitator Superfamily JK088_19575 PF00196 Bacterial regulatory proteins, luxR family JK088_19575 PF00072 Response regulator receiver domain JK088_19580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_19580 PF07730 Histidine kinase JK088_19580 PF05231 MASE1 JK088_19585 PF07690 Major Facilitator Superfamily JK088_19590 PF01238 Phosphomannose isomerase type I JK088_19610 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JK088_19610 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JK088_19615 PF00085 Thioredoxin JK088_19620 PF07690 Major Facilitator Superfamily JK088_19625 PF12833 Helix-turn-helix domain JK088_19625 PF07494 Two component regulator propeller JK088_19625 PF00512 His Kinase A (phospho-acceptor) domain JK088_19625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_19625 PF07495 Y_Y_Y domain JK088_19625 PF00072 Response regulator receiver domain JK088_19630 PF01554 MatE JK088_19635 PF11756 Nitrous oxide-stimulated promoter JK088_19650 PF00593 TonB dependent receptor JK088_19650 PF07715 TonB-dependent Receptor Plug Domain JK088_19660 PF03605 Anaerobic c4-dicarboxylate membrane transporter JK088_19675 PF10414 Sirohaem synthase dimerisation region JK088_19675 PF14824 Sirohaem biosynthesis protein central JK088_19675 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JK088_19680 PF01226 Formate/nitrite transporter JK088_19685 PF13806 Rieske-like [2Fe-2S] domain JK088_19690 PF18267 Rubredoxin NAD+ reductase C-terminal domain JK088_19690 PF07992 Pyridine nucleotide-disulphide oxidoreductase JK088_19690 PF04324 BFD-like [2Fe-2S] binding domain JK088_19690 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JK088_19690 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JK088_19695 PF14760 Rnk N-terminus JK088_19695 PF01272 Transcription elongation factor, GreA/GreB, C-term JK088_19735 PF06965 Na+/H+ antiporter 1 JK088_19735 PF13462 Thioredoxin JK088_19755 PF09154 Domain of unknown function (DUF1939) JK088_19755 PF00128 Alpha amylase, catalytic domain JK088_19770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JK088_19770 PF00672 HAMP domain JK088_19775 PF01168 Alanine racemase, N-terminal domain JK088_19775 PF00842 Alanine racemase, C-terminal domain JK088_19790 PF01565 FAD binding domain JK088_19790 PF09330 D-lactate dehydrogenase, membrane binding JK088_19795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_19795 PF03466 LysR substrate binding domain JK088_19810 PF05762 VWA domain containing CoxE-like protein JK088_19815 PF07728 AAA domain (dynein-related subfamily) JK088_19815 PF12592 Protein of unknown function (DUF3763) JK088_19815 PF17868 AAA lid domain JK088_19825 PF01212 Beta-eliminating lyase JK088_19830 PF00034 Cytochrome c JK088_19835 PF03606 C4-dicarboxylate anaerobic carrier JK088_19845 PF07690 Major Facilitator Superfamily JK088_19855 PF08212 Lipocalin-like domain JK088_19875 PF13476 AAA domain JK088_19880 PF12320 Type 5 capsule protein repressor C-terminal domain JK088_19880 PF00149 Calcineurin-like phosphoesterase JK088_19895 PF06715 Gp5 C-terminal repeat (3 copies) JK088_19895 PF04717 Type VI secretion system, phage-baseplate injector JK088_19905 PF10431 C-terminal, D2-small domain, of ClpB protein JK088_19905 PF17871 AAA lid domain JK088_19905 PF07724 AAA domain (Cdc48 subfamily) JK088_19905 PF00004 ATPase family associated with various cellular activities (AAA) JK088_19915 PF05947 Type VI secretion system, TssF JK088_19930 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath JK088_19935 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath JK088_19940 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 JK088_19960 PF06744 Type VI secretion protein IcmF C-terminal JK088_19960 PF06761 Intracellular multiplication and human macrophage-killing JK088_19960 PF14331 ImcF-related N-terminal domain JK088_19965 PF13677 Membrane MotB of proton-channel complex MotA/MotB JK088_19965 PF00691 OmpA family JK088_19970 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE JK088_19985 PF03793 PASTA domain JK088_19985 PF00069 Protein kinase domain JK088_20010 PF00211 Adenylate and Guanylate cyclase catalytic domain JK088_20010 PF00072 Response regulator receiver domain JK088_20025 PF00440 Bacterial regulatory proteins, tetR family JK088_20025 PF08361 MAATS-type transcriptional repressor, C-terminal region JK088_20040 PF04324 BFD-like [2Fe-2S] binding domain JK088_20040 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JK088_20040 PF18267 Rubredoxin NAD+ reductase C-terminal domain JK088_20040 PF13806 Rieske-like [2Fe-2S] domain JK088_20040 PF07992 Pyridine nucleotide-disulphide oxidoreductase JK088_20040 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JK088_20045 PF00005 ABC transporter JK088_20050 PF00528 Binding-protein-dependent transport system inner membrane component JK088_20060 PF03861 ANTAR domain JK088_20060 PF08376 Nitrate and nitrite sensing JK088_20065 PF01738 Dienelactone hydrolase family JK088_20070 PF00591 Glycosyl transferase family, a/b domain JK088_20070 PF02885 Glycosyl transferase family, helical bundle domain JK088_20075 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JK088_20075 PF10414 Sirohaem synthase dimerisation region JK088_20075 PF14824 Sirohaem biosynthesis protein central JK088_20080 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JK088_20080 PF00384 Molybdopterin oxidoreductase JK088_20080 PF01568 Molydopterin dinucleotide binding domain JK088_20085 PF00583 Acetyltransferase (GNAT) family JK088_20090 PF03222 Tryptophan/tyrosine permease family JK088_20095 PF00072 Response regulator receiver domain JK088_20095 PF00990 Diguanylate cyclase, GGDEF domain JK088_20105 PF01483 Proprotein convertase P-domain JK088_20105 PF00082 Subtilase family JK088_20115 PF00245 Alkaline phosphatase JK088_20130 PF00072 Response regulator receiver domain JK088_20130 PF00486 Transcriptional regulatory protein, C terminal JK088_20150 PF01048 Phosphorylase superfamily JK088_20155 PF04973 Nicotinamide mononucleotide transporter JK088_20165 PF00356 Bacterial regulatory proteins, lacI family JK088_20170 PF00294 pfkB family carbohydrate kinase JK088_20175 PF13407 Periplasmic binding protein domain JK088_20180 PF02653 Branched-chain amino acid transport system / permease component JK088_20185 PF00005 ABC transporter JK088_20190 PF05025 RbsD / FucU transport protein family JK088_20195 PF00563 EAL domain JK088_20195 PF00990 Diguanylate cyclase, GGDEF domain JK088_20200 PF01048 Phosphorylase superfamily JK088_20240 PF04116 Fatty acid hydroxylase superfamily JK088_20255 PF00072 Response regulator receiver domain JK088_20255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_20255 PF09308 LuxQ, periplasmic JK088_20255 PF00512 His Kinase A (phospho-acceptor) domain JK088_20260 PF00034 Cytochrome c JK088_20260 PF03150 Di-haem cytochrome c peroxidase JK088_20265 PF13188 PAS domain JK088_20265 PF03707 Bacterial signalling protein N terminal repeat JK088_20265 PF00990 Diguanylate cyclase, GGDEF domain JK088_20265 PF00563 EAL domain JK088_20275 PF01145 SPFH domain / Band 7 family JK088_20275 PF16200 C-terminal region of band_7 JK088_20285 PF00881 Nitroreductase family JK088_20290 PF00005 ABC transporter JK088_20290 PF00571 CBS domain JK088_20295 PF00528 Binding-protein-dependent transport system inner membrane component JK088_20300 PF04069 Substrate binding domain of ABC-type glycine betaine transport system JK088_20305 PF05199 GMC oxidoreductase JK088_20305 PF00732 GMC oxidoreductase JK088_20310 PF00171 Aldehyde dehydrogenase family JK088_20315 PF13977 BetI-type transcriptional repressor, C-terminal JK088_20315 PF00440 Bacterial regulatory proteins, tetR family JK088_20320 PF17151 Periplasmic sensor domain JK088_20320 PF00990 Diguanylate cyclase, GGDEF domain JK088_20330 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JK088_20330 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JK088_20340 PF00378 Enoyl-CoA hydratase/isomerase JK088_20345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JK088_20345 PF02770 Acyl-CoA dehydrogenase, middle domain JK088_20345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JK088_20350 PF00171 Aldehyde dehydrogenase family JK088_20355 PF00108 Thiolase, N-terminal domain JK088_20355 PF02803 Thiolase, C-terminal domain JK088_20360 PF00376 MerR family regulatory protein JK088_20360 PF09278 MerR, DNA binding JK088_20365 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JK088_20365 PF02770 Acyl-CoA dehydrogenase, middle domain JK088_20365 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JK088_20370 PF01039 Carboxyl transferase domain JK088_20375 PF00378 Enoyl-CoA hydratase/isomerase JK088_20380 PF00364 Biotin-requiring enzyme JK088_20380 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JK088_20380 PF02785 Biotin carboxylase C-terminal domain JK088_20380 PF00289 Biotin carboxylase, N-terminal domain JK088_20385 PF00682 HMGL-like JK088_20390 PF00672 HAMP domain JK088_20390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_20390 PF00512 His Kinase A (phospho-acceptor) domain JK088_20390 PF01627 Hpt domain JK088_20390 PF00072 Response regulator receiver domain JK088_20390 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JK088_20405 PF00924 Mechanosensitive ion channel JK088_20405 PF12795 Mechanosensitive ion channel porin domain JK088_20405 PF12794 Mechanosensitive ion channel inner membrane domain 1 JK088_20410 PF14602 Hexapeptide repeat of succinyl-transferase JK088_20410 PF12464 Maltose acetyltransferase JK088_20415 PF00155 Aminotransferase class I and II JK088_20415 PF00392 Bacterial regulatory proteins, gntR family JK088_20420 PF01654 Cytochrome bd terminal oxidase subunit I JK088_20425 PF02322 Cytochrome bd terminal oxidase subunit II JK088_20435 PF02567 Phenazine biosynthesis-like protein JK088_20440 PF02627 Carboxymuconolactone decarboxylase family JK088_20445 PF13411 MerR HTH family regulatory protein JK088_20455 PF00034 Cytochrome c JK088_20465 PF05724 Thiopurine S-methyltransferase (TPMT) JK088_20470 PF00501 AMP-binding enzyme JK088_20470 PF14535 AMP-binding enzyme C-terminal domain JK088_20475 PF00005 ABC transporter JK088_20500 PF00005 ABC transporter JK088_20500 PF12399 Branched-chain amino acid ATP-binding cassette transporter JK088_20510 PF01012 Electron transfer flavoprotein domain JK088_20515 PF00766 Electron transfer flavoprotein FAD-binding domain JK088_20515 PF01012 Electron transfer flavoprotein domain JK088_20520 PF13193 AMP-binding enzyme C-terminal domain JK088_20520 PF00501 AMP-binding enzyme JK088_20525 PF00478 IMP dehydrogenase / GMP reductase domain JK088_20530 PF03853 YjeF-related protein N-terminus JK088_20530 PF01256 Carbohydrate kinase JK088_20540 PF00072 Response regulator receiver domain JK088_20545 PF00248 Aldo/keto reductase family JK088_20560 PF00654 Voltage gated chloride channel JK088_20570 PF01566 Natural resistance-associated macrophage protein JK088_20575 PF01227 GTP cyclohydrolase I JK088_20580 PF03453 MoeA N-terminal region (domain I and II) JK088_20580 PF03454 MoeA C-terminal region (domain IV) JK088_20580 PF00994 Probable molybdopterin binding domain JK088_20585 PF00899 ThiF family JK088_20605 PF00581 Rhodanese-like domain JK088_20610 PF03707 Bacterial signalling protein N terminal repeat JK088_20610 PF00990 Diguanylate cyclase, GGDEF domain JK088_20610 PF00563 EAL domain JK088_20625 PF00923 Transaldolase/Fructose-6-phosphate aldolase JK088_20630 PF02779 Transketolase, pyrimidine binding domain JK088_20630 PF02780 Transketolase, C-terminal domain JK088_20630 PF00456 Transketolase, thiamine diphosphate binding domain JK088_20640 PF07690 Major Facilitator Superfamily JK088_20645 PF00793 DAHP synthetase I family JK088_20650 PF00691 OmpA family JK088_20650 PF01389 OmpA-like transmembrane domain JK088_20655 PF13419 Haloacid dehalogenase-like hydrolase JK088_20660 PF00472 RF-1 domain JK088_20665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JK088_20665 PF00672 HAMP domain JK088_20665 PF12729 Four helix bundle sensory module for signal transduction JK088_20670 PF00873 AcrB/AcrD/AcrF family JK088_20675 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JK088_20680 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JK088_20685 PF01546 Peptidase family M20/M25/M40 JK088_20685 PF07687 Peptidase dimerisation domain JK088_20700 PF00072 Response regulator receiver domain JK088_20700 PF00196 Bacterial regulatory proteins, luxR family JK088_20705 PF07730 Histidine kinase JK088_20705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_20705 PF00672 HAMP domain JK088_20705 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term JK088_20710 PF12838 4Fe-4S dicluster domain JK088_20710 PF13187 4Fe-4S dicluster domain JK088_20720 PF00384 Molybdopterin oxidoreductase JK088_20720 PF01568 Molydopterin dinucleotide binding domain JK088_20720 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JK088_20725 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) JK088_20730 PF03264 NapC/NirT cytochrome c family, N-terminal region JK088_20740 PF00561 alpha/beta hydrolase fold JK088_20740 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus JK088_20750 PF02803 Thiolase, C-terminal domain JK088_20750 PF00108 Thiolase, N-terminal domain JK088_20755 PF00106 short chain dehydrogenase JK088_20770 PF02355 Protein export membrane protein JK088_20770 PF07549 SecD/SecF GG Motif JK088_20775 PF02355 Protein export membrane protein JK088_20775 PF07549 SecD/SecF GG Motif JK088_20775 PF13721 SecD export protein N-terminal TM region JK088_20800 PF01037 Lrp/AsnC ligand binding domain JK088_20820 PF00529 HlyD membrane-fusion protein of T1SS JK088_20820 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JK088_20830 PF00072 Response regulator receiver domain JK088_20830 PF09308 LuxQ, periplasmic JK088_20830 PF00512 His Kinase A (phospho-acceptor) domain JK088_20830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_20835 PF13407 Periplasmic binding protein domain JK088_20840 PF01541 GIY-YIG catalytic domain JK088_20845 PF04337 Protein of unknown function, DUF480 JK088_20855 PF04363 Protein of unknown function (DUF496) JK088_20860 PF01554 MatE JK088_20865 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JK088_20870 PF01627 Hpt domain JK088_20870 PF00072 Response regulator receiver domain JK088_20870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_20870 PF00672 HAMP domain JK088_20870 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JK088_20870 PF00512 His Kinase A (phospho-acceptor) domain JK088_20875 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JK088_20875 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JK088_20890 PF03466 LysR substrate binding domain JK088_20890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_20895 PF01037 Lrp/AsnC ligand binding domain JK088_20895 PF13404 AsnC-type helix-turn-helix domain JK088_20900 PF13520 Amino acid permease JK088_20905 PF00155 Aminotransferase class I and II JK088_20905 PF00392 Bacterial regulatory proteins, gntR family JK088_20915 PF03109 ABC1 family JK088_20920 PF00571 CBS domain JK088_20920 PF03448 MgtE intracellular N domain JK088_20920 PF01769 Divalent cation transporter JK088_20925 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin JK088_20930 PF07969 Amidohydrolase family JK088_20940 PF01966 HD domain JK088_20960 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JK088_20965 PF00255 Glutathione peroxidase JK088_20980 PF01323 DSBA-like thioredoxin domain JK088_20995 PF00106 short chain dehydrogenase JK088_21000 PF00072 Response regulator receiver domain JK088_21000 PF00486 Transcriptional regulatory protein, C terminal JK088_21005 PF00672 HAMP domain JK088_21005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_21005 PF00512 His Kinase A (phospho-acceptor) domain JK088_21015 PF01219 Prokaryotic diacylglycerol kinase JK088_21020 PF00884 Sulfatase JK088_21020 PF08019 Phosphoethanolamine transferase EptA/EptB JK088_21025 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JK088_21035 PF07690 Major Facilitator Superfamily JK088_21050 PF01047 MarR family JK088_21060 PF01734 Patatin-like phospholipase JK088_21065 PF05726 Pirin C-terminal cupin domain JK088_21065 PF02678 Pirin JK088_21070 PF00313 'Cold-shock' DNA-binding domain JK088_21085 PF00962 Adenosine/AMP deaminase JK088_21090 PF08534 Redoxin JK088_21090 PF00462 Glutaredoxin JK088_21110 PF07943 Penicillin-binding protein 5, C-terminal domain JK088_21110 PF00768 D-alanyl-D-alanine carboxypeptidase JK088_21115 PF02798 Glutathione S-transferase, N-terminal domain JK088_21120 PF02909 Tetracyclin repressor-like, C-terminal domain JK088_21120 PF00440 Bacterial regulatory proteins, tetR family JK088_21125 PF01872 RibD C-terminal domain JK088_21155 PF12146 Serine aminopeptidase, S33 JK088_21160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_21160 PF03466 LysR substrate binding domain JK088_21235 PF00528 Binding-protein-dependent transport system inner membrane component JK088_21240 PF14785 Maltose transport system permease protein MalF P2 domain JK088_21240 PF00528 Binding-protein-dependent transport system inner membrane component JK088_21245 PF01547 Bacterial extracellular solute-binding protein JK088_21250 PF00005 ABC transporter JK088_21250 PF08402 TOBE domain JK088_21255 PF02397 Bacterial sugar transferase JK088_21270 PF13614 AAA domain JK088_21270 PF13807 G-rich domain on putative tyrosine kinase JK088_21270 PF02706 Chain length determinant protein JK088_21280 PF00534 Glycosyl transferases group 1 JK088_21310 PF04266 ASCH domain JK088_21315 PF16925 Tetracyclin repressor-like, C-terminal domain JK088_21315 PF00440 Bacterial regulatory proteins, tetR family JK088_21320 PF16884 N-terminal domain of oxidoreductase JK088_21320 PF00107 Zinc-binding dehydrogenase JK088_21325 PF13417 Glutathione S-transferase, N-terminal domain JK088_21330 PF00199 Catalase JK088_21330 PF06628 Catalase-related immune-responsive JK088_21335 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JK088_21335 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JK088_21345 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JK088_21355 PF12833 Helix-turn-helix domain JK088_21360 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JK088_21360 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JK088_21365 PF01238 Phosphomannose isomerase type I JK088_21375 PF13419 Haloacid dehalogenase-like hydrolase JK088_21380 PF00127 Copper binding proteins, plastocyanin/azurin family JK088_21385 PF00563 EAL domain JK088_21385 PF03707 Bacterial signalling protein N terminal repeat JK088_21385 PF00990 Diguanylate cyclase, GGDEF domain JK088_21390 PF02386 Cation transport protein JK088_21395 PF02080 TrkA-C domain JK088_21395 PF02254 TrkA-N domain JK088_21400 PF00072 Response regulator receiver domain JK088_21400 PF00486 Transcriptional regulatory protein, C terminal JK088_21405 PF02702 Osmosensitive K+ channel His kinase sensor domain JK088_21405 PF00512 His Kinase A (phospho-acceptor) domain JK088_21405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_21405 PF13493 Domain of unknown function (DUF4118) JK088_21405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_21405 PF00512 His Kinase A (phospho-acceptor) domain JK088_21405 PF13493 Domain of unknown function (DUF4118) JK088_21405 PF02702 Osmosensitive K+ channel His kinase sensor domain JK088_21410 PF00005 ABC transporter JK088_21410 PF00664 ABC transporter transmembrane region JK088_21415 PF07715 TonB-dependent Receptor Plug Domain JK088_21415 PF00593 TonB dependent receptor JK088_21420 PF00005 ABC transporter JK088_21425 PF01497 Periplasmic binding protein JK088_21430 PF01032 FecCD transport family JK088_21440 PF00529 HlyD membrane-fusion protein of T1SS JK088_21445 PF00005 ABC transporter JK088_21445 PF00664 ABC transporter transmembrane region JK088_21455 PF00196 Bacterial regulatory proteins, luxR family JK088_21460 PF00196 Bacterial regulatory proteins, luxR family JK088_21470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JK088_21470 PF02743 Cache domain JK088_21470 PF00672 HAMP domain JK088_21475 PF07726 ATPase family associated with various cellular activities (AAA) JK088_21475 PF17863 AAA lid domain JK088_21480 PF01882 Protein of unknown function DUF58 JK088_21490 PF13519 von Willebrand factor type A domain JK088_21495 PF07584 Aerotolerance regulator N-terminal JK088_21495 PF13519 von Willebrand factor type A domain JK088_21515 PF00005 ABC transporter JK088_21520 PF00528 Binding-protein-dependent transport system inner membrane component JK088_21525 PF00528 Binding-protein-dependent transport system inner membrane component JK088_21530 PF12849 PBP superfamily domain JK088_21535 PF00672 HAMP domain JK088_21535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JK088_21555 PF07715 TonB-dependent Receptor Plug Domain JK088_21555 PF00593 TonB dependent receptor JK088_21560 PF00326 Prolyl oligopeptidase family JK088_21560 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JK088_21565 PF00270 DEAD/DEAH box helicase JK088_21565 PF00271 Helicase conserved C-terminal domain JK088_21575 PF03734 L,D-transpeptidase catalytic domain JK088_21575 PF17969 L,D-transpeptidase C-terminal domain JK088_21575 PF01476 LysM domain JK088_21580 PF00875 DNA photolyase JK088_21580 PF03441 FAD binding domain of DNA photolyase JK088_21585 PF13411 MerR HTH family regulatory protein JK088_21590 PF08349 Protein of unknown function (DUF1722) JK088_21595 PF01048 Phosphorylase superfamily JK088_21610 PF00990 Diguanylate cyclase, GGDEF domain JK088_21615 PF11742 Protein of unknown function (DUF3302) JK088_21620 PF00529 HlyD membrane-fusion protein of T1SS JK088_21620 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JK088_21625 PF07155 ECF-type riboflavin transporter, S component JK088_21630 PF00005 ABC transporter JK088_21630 PF12558 ATP-binding cassette cobalt transporter JK088_21645 PF12801 4Fe-4S binding domain JK088_21645 PF13237 4Fe-4S dicluster domain JK088_21650 PF12800 4Fe-4S binding domain JK088_21650 PF12838 4Fe-4S dicluster domain JK088_21655 PF00583 Acetyltransferase (GNAT) family JK088_21670 PF07238 PilZ domain JK088_21670 PF12945 Flagellar protein YcgR JK088_21675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JK088_21675 PF00672 HAMP domain JK088_21680 PF05362 Lon protease (S16) C-terminal proteolytic domain JK088_21680 PF13654 AAA domain JK088_21690 PF00005 ABC transporter JK088_21690 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JK088_21695 PF00326 Prolyl oligopeptidase family JK088_21695 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JK088_21700 PF03466 LysR substrate binding domain JK088_21700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_21705 PF02652 L-lactate permease JK088_21710 PF01070 FMN-dependent dehydrogenase JK088_21720 PF00924 Mechanosensitive ion channel JK088_21725 PF00194 Eukaryotic-type carbonic anhydrase JK088_21755 PF00107 Zinc-binding dehydrogenase JK088_21755 PF08240 Alcohol dehydrogenase GroES-like domain JK088_21760 PF00155 Aminotransferase class I and II JK088_21765 PF00563 EAL domain JK088_21765 PF00990 Diguanylate cyclase, GGDEF domain JK088_21765 PF03707 Bacterial signalling protein N terminal repeat JK088_21770 PF00497 Bacterial extracellular solute-binding proteins, family 3 JK088_21775 PF00266 Aminotransferase class-V JK088_21780 PF00080 Copper/zinc superoxide dismutase (SODC) JK088_21785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_21785 PF00512 His Kinase A (phospho-acceptor) domain JK088_21785 PF08448 PAS fold JK088_21785 PF13426 PAS domain JK088_21785 PF00072 Response regulator receiver domain JK088_21790 PF00486 Transcriptional regulatory protein, C terminal JK088_21790 PF00072 Response regulator receiver domain JK088_21810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_21810 PF03466 LysR substrate binding domain JK088_21815 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JK088_21850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_21850 PF03466 LysR substrate binding domain JK088_21865 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JK088_21865 PF18269 T3SS EscN ATPase C-terminal domain JK088_21875 PF14842 FliG N-terminal domain JK088_21875 PF14841 FliG middle domain JK088_21875 PF01706 FliG C-terminal domain JK088_21880 PF01514 Secretory protein of YscJ/FliF family JK088_21880 PF08345 Flagellar M-ring protein C-terminal JK088_21885 PF02049 Flagellar hook-basal body complex protein FliE JK088_21890 PF00072 Response regulator receiver domain JK088_21890 PF02954 Bacterial regulatory protein, Fis family JK088_21890 PF00158 Sigma-54 interaction domain JK088_21905 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JK088_21910 PF00813 FliP family JK088_21915 PF01313 Bacterial export proteins, family 3 JK088_21920 PF01311 Bacterial export proteins, family 1 JK088_21925 PF01312 FlhB HrpN YscU SpaS Family JK088_21930 PF00771 FHIPEP family JK088_21940 PF00700 Bacterial flagellin C-terminal helical region JK088_21940 PF00669 Bacterial flagellin N-terminal helical region JK088_21960 PF07196 Flagellin hook IN motif JK088_21960 PF07195 Flagellar hook-associated protein 2 C-terminus JK088_21960 PF02465 Flagellar hook-associated protein 2 N-terminus JK088_21965 PF02561 Flagellar protein FliS JK088_21980 PF03748 Flagellar basal body-associated protein FliL JK088_21985 PF04542 Sigma-70 region 2 JK088_21985 PF04545 Sigma-70, region 4 JK088_21990 PF01618 MotA/TolQ/ExbB proton channel family JK088_21995 PF00691 OmpA family JK088_21995 PF13677 Membrane MotB of proton-channel complex MotA/MotB JK088_22005 PF08000 Bacterial PH domain JK088_22025 PF01228 Glycine radical JK088_22025 PF02901 Pyruvate formate lyase-like JK088_22030 PF04055 Radical SAM superfamily JK088_22035 PF00923 Transaldolase/Fructose-6-phosphate aldolase JK088_22045 PF00583 Acetyltransferase (GNAT) family JK088_22055 PF07690 Major Facilitator Superfamily JK088_22060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_22060 PF03466 LysR substrate binding domain JK088_22065 PF00892 EamA-like transporter family JK088_22085 PF13533 Biotin-lipoyl like JK088_22095 PF01594 AI-2E family transporter JK088_22100 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) JK088_22110 PF00970 Oxidoreductase FAD-binding domain JK088_22110 PF00175 Oxidoreductase NAD-binding domain JK088_22120 PF09905 DNA-binding protein VF530 JK088_22125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_22125 PF03466 LysR substrate binding domain JK088_22135 PF00881 Nitroreductase family JK088_22140 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JK088_22140 PF12833 Helix-turn-helix domain JK088_22145 PF00686 Starch binding domain JK088_22145 PF00128 Alpha amylase, catalytic domain JK088_22150 PF00768 D-alanyl-D-alanine carboxypeptidase JK088_22150 PF07943 Penicillin-binding protein 5, C-terminal domain JK088_22155 PF00561 alpha/beta hydrolase fold JK088_22165 PF17773 UPF0176 acylphosphatase like domain JK088_22165 PF00581 Rhodanese-like domain JK088_22170 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading JK088_22170 PF18416 N-acetylglucosamine binding protein domain 2 JK088_22175 PF01734 Patatin-like phospholipase JK088_22180 PF01914 MarC family integral membrane protein JK088_22185 PF00881 Nitroreductase family JK088_22190 PF18412 Outer-membrane lipoprotein Wza C-terminal domain JK088_22190 PF02563 Polysaccharide biosynthesis/export protein JK088_22190 PF10531 SLBB domain JK088_22195 PF01451 Low molecular weight phosphotyrosine protein phosphatase JK088_22200 PF13614 AAA domain JK088_22200 PF13807 G-rich domain on putative tyrosine kinase JK088_22200 PF02706 Chain length determinant protein JK088_22210 PF08803 Putative mono-oxygenase ydhR JK088_22215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_22215 PF03466 LysR substrate binding domain JK088_22225 PF00375 Sodium:dicarboxylate symporter family JK088_22230 PF06803 Protein of unknown function (DUF1232) JK088_22235 PF07687 Peptidase dimerisation domain JK088_22235 PF01546 Peptidase family M20/M25/M40 JK088_22240 PF07670 Nucleoside recognition JK088_22245 PF07670 Nucleoside recognition JK088_22255 PF00128 Alpha amylase, catalytic domain JK088_22260 PF00912 Transglycosylase JK088_22265 PF00128 Alpha amylase, catalytic domain JK088_22265 PF02806 Alpha amylase, C-terminal all-beta domain JK088_22265 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JK088_22270 PF02446 4-alpha-glucanotransferase JK088_22275 PF00343 Carbohydrate phosphorylase JK088_22280 PF00196 Bacterial regulatory proteins, luxR family JK088_22280 PF17874 MalT-like TPR region JK088_22295 PF02630 SCO1/SenC JK088_22305 PF02378 Phosphotransferase system, EIIC JK088_22305 PF00367 phosphotransferase system, EIIB JK088_22310 PF03193 RsgA GTPase JK088_22315 PF00375 Sodium:dicarboxylate symporter family JK088_22325 PF08543 Phosphomethylpyrimidine kinase JK088_22335 PF13520 Amino acid permease JK088_22340 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain JK088_22340 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain JK088_22340 PF01276 Orn/Lys/Arg decarboxylase, major domain JK088_22355 PF11852 Domain of unknown function (DUF3372) JK088_22355 PF03714 Bacterial pullanase-associated domain JK088_22355 PF17967 Pullulanase N2 domain JK088_22355 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JK088_22355 PF18494 Pullulanase Ins domain JK088_22360 PF04231 Endonuclease I JK088_22365 PF00128 Alpha amylase, catalytic domain JK088_22365 PF02903 Alpha amylase, N-terminal ig-like domain JK088_22365 PF16657 Maltogenic Amylase, C-terminal domain JK088_22380 PF02264 LamB porin JK088_22385 PF00128 Alpha amylase, catalytic domain JK088_22385 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JK088_22395 PF07690 Major Facilitator Superfamily JK088_22405 PF01551 Peptidase family M23 JK088_22405 PF04225 Opacity-associated protein A LysM-like domain JK088_22415 PF05193 Peptidase M16 inactive domain JK088_22415 PF00675 Insulinase (Peptidase family M16) JK088_22420 PF00672 HAMP domain JK088_22420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JK088_22420 PF17200 Single Cache domain 2 JK088_22425 PF00005 ABC transporter JK088_22430 PF01032 FecCD transport family JK088_22435 PF01032 FecCD transport family JK088_22440 PF01497 Periplasmic binding protein JK088_22455 PF02655 ATP-grasp domain JK088_22455 PF00206 Lyase JK088_22460 PF04183 IucA / IucC family JK088_22460 PF06276 Ferric iron reductase FhuF-like transporter JK088_22470 PF06276 Ferric iron reductase FhuF-like transporter JK088_22470 PF04183 IucA / IucC family JK088_22475 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JK088_22475 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JK088_22480 PF01547 Bacterial extracellular solute-binding protein JK088_22485 PF00512 His Kinase A (phospho-acceptor) domain JK088_22485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_22485 PF08521 Two-component sensor kinase N-terminal JK088_22490 PF00486 Transcriptional regulatory protein, C terminal JK088_22490 PF00072 Response regulator receiver domain JK088_22495 PF02378 Phosphotransferase system, EIIC JK088_22495 PF00367 phosphotransferase system, EIIB JK088_22505 PF01136 Peptidase family U32 JK088_22510 PF02653 Branched-chain amino acid transport system / permease component JK088_22515 PF00005 ABC transporter JK088_22520 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JK088_22525 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JK088_22525 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JK088_22530 PF00596 Class II Aldolase and Adducin N-terminal domain JK088_22535 PF02610 L-arabinose isomerase JK088_22535 PF11762 L-arabinose isomerase C-terminal domain JK088_22545 PF12833 Helix-turn-helix domain JK088_22545 PF02311 AraC-like ligand binding domain JK088_22560 PF02566 OsmC-like protein JK088_22565 PF01047 MarR family JK088_22570 PF10417 C-terminal domain of 1-Cys peroxiredoxin JK088_22570 PF00578 AhpC/TSA family JK088_22575 PF07992 Pyridine nucleotide-disulphide oxidoreductase JK088_22575 PF13192 Thioredoxin domain JK088_22590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_22590 PF03466 LysR substrate binding domain JK088_22595 PF12833 Helix-turn-helix domain JK088_22595 PF01965 DJ-1/PfpI family JK088_22600 PF04542 Sigma-70 region 2 JK088_22600 PF08281 Sigma-70, region 4 JK088_22610 PF02743 Cache domain JK088_22610 PF00672 HAMP domain JK088_22610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JK088_22615 PF03466 LysR substrate binding domain JK088_22615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_22620 PF11975 Family 4 glycosyl hydrolase C-terminal domain JK088_22620 PF02056 Family 4 glycosyl hydrolase JK088_22635 PF03475 3-alpha domain JK088_22635 PF03473 MOSC domain JK088_22640 PF00271 Helicase conserved C-terminal domain JK088_22640 PF00270 DEAD/DEAH box helicase JK088_22645 PF03786 D-mannonate dehydratase (UxuA) JK088_22650 PF07729 FCD domain JK088_22650 PF00392 Bacterial regulatory proteins, gntR family JK088_22655 PF03480 Bacterial extracellular solute-binding protein, family 7 JK088_22660 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component JK088_22665 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JK088_22670 PF01232 Mannitol dehydrogenase Rossmann domain JK088_22670 PF08125 Mannitol dehydrogenase C-terminal domain JK088_22675 PF02614 Glucuronate isomerase JK088_22680 PF00294 pfkB family carbohydrate kinase JK088_22685 PF01081 KDPG and KHG aldolase JK088_22690 PF10688 Bacterial inner membrane protein JK088_22705 PF06719 AraC-type transcriptional regulator N-terminus JK088_22705 PF12833 Helix-turn-helix domain JK088_22715 PF00005 ABC transporter JK088_22715 PF00664 ABC transporter transmembrane region JK088_22725 PF01037 Lrp/AsnC ligand binding domain JK088_22760 PF00474 Sodium:solute symporter family JK088_22770 PF18327 Proline utilization A proline dehydrogenase N-terminal domain JK088_22770 PF14850 DNA-binding domain of Proline dehydrogenase JK088_22770 PF01619 Proline dehydrogenase JK088_22770 PF00171 Aldehyde dehydrogenase family JK088_22775 PF12833 Helix-turn-helix domain JK088_22785 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region JK088_22785 PF01243 Pyridoxamine 5'-phosphate oxidase JK088_22790 PF02743 Cache domain JK088_22790 PF00512 His Kinase A (phospho-acceptor) domain JK088_22790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_22795 PF00072 Response regulator receiver domain JK088_22795 PF02954 Bacterial regulatory protein, Fis family JK088_22795 PF00158 Sigma-54 interaction domain JK088_22800 PF00529 HlyD membrane-fusion protein of T1SS JK088_22815 PF00664 ABC transporter transmembrane region JK088_22815 PF00005 ABC transporter JK088_22815 PF03412 Peptidase C39 family JK088_22825 PF03358 NADPH-dependent FMN reductase JK088_22830 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JK088_22835 PF00246 Zinc carboxypeptidase JK088_22840 PF01418 Helix-turn-helix domain, rpiR family JK088_22840 PF01380 SIS domain JK088_22845 PF01380 SIS domain JK088_22850 PF00367 phosphotransferase system, EIIB JK088_22850 PF02378 Phosphotransferase system, EIIC JK088_22855 PF00267 Gram-negative porin JK088_22860 PF03575 Peptidase family S51 JK088_22865 PF03466 LysR substrate binding domain JK088_22865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_22880 PF13718 GNAT acetyltransferase 2 JK088_22880 PF05127 Helicase JK088_22885 PF02195 ParB-like nuclease domain JK088_22885 PF08775 ParB family JK088_22890 PF18607 ParA helix turn helix domain JK088_22890 PF13614 AAA domain JK088_22905 PF00005 ABC transporter JK088_22905 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JK088_22910 PF00005 ABC transporter JK088_22910 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JK088_22920 PF00925 GTP cyclohydrolase II JK088_22920 PF08719 Domain of unknown function (DUF1768) JK088_22930 PF17149 Periplasmic sensor domain found in signal transduction proteins JK088_22930 PF00672 HAMP domain JK088_22930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_22930 PF00072 Response regulator receiver domain JK088_22930 PF01627 Hpt domain JK088_22930 PF00512 His Kinase A (phospho-acceptor) domain JK088_22940 PF01709 Transcriptional regulator JK088_22945 PF01098 Cell cycle protein JK088_22955 PF00005 ABC transporter JK088_22975 PF07694 5TMR of 5TMR-LYT JK088_22975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_22975 PF06580 Histidine kinase JK088_22975 PF13492 GAF domain JK088_22980 PF04397 LytTr DNA-binding domain JK088_22980 PF00072 Response regulator receiver domain JK088_22990 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JK088_22995 PF00672 HAMP domain JK088_22995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JK088_22995 PF17200 Single Cache domain 2 JK088_23010 PF00132 Bacterial transferase hexapeptide (six repeats) JK088_23015 PF03616 Sodium/glutamate symporter JK088_23025 PF00005 ABC transporter JK088_23030 PF00155 Aminotransferase class I and II JK088_23030 PF00392 Bacterial regulatory proteins, gntR family JK088_23035 PF03616 Sodium/glutamate symporter JK088_23045 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JK088_23060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_23060 PF03466 LysR substrate binding domain JK088_23065 PF17954 Quercetinase C-terminal cupin domain JK088_23065 PF02678 Pirin JK088_23070 PF07681 DoxX JK088_23080 PF00730 HhH-GPD superfamily base excision DNA repair protein JK088_23080 PF06029 AlkA N-terminal domain JK088_23085 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JK088_23085 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JK088_23095 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JK088_23105 PF03600 Citrate transporter JK088_23125 PF08329 Chitinase A, N-terminal domain JK088_23125 PF00704 Glycosyl hydrolases family 18 JK088_23135 PF06865 Pyrimidine/purine nucleoside phosphorylase JK088_23145 PF00990 Diguanylate cyclase, GGDEF domain JK088_23145 PF00563 EAL domain JK088_23150 PF01554 MatE JK088_23155 PF00849 RNA pseudouridylate synthase JK088_23170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_23170 PF03466 LysR substrate binding domain JK088_23185 PF00990 Diguanylate cyclase, GGDEF domain JK088_23185 PF17152 Periplasmic sensor domain JK088_23195 PF00756 Putative esterase JK088_23200 PF00107 Zinc-binding dehydrogenase JK088_23200 PF08240 Alcohol dehydrogenase GroES-like domain JK088_23205 PF00797 N-acetyltransferase JK088_23210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_23210 PF03466 LysR substrate binding domain JK088_23225 PF09339 IclR helix-turn-helix domain JK088_23225 PF01614 Bacterial transcriptional regulator JK088_23235 PF10688 Bacterial inner membrane protein JK088_23240 PF07883 Cupin domain JK088_23255 PF00294 pfkB family carbohydrate kinase JK088_23260 PF01081 KDPG and KHG aldolase JK088_23275 PF13229 Right handed beta helix region JK088_23280 PF00474 Sodium:solute symporter family JK088_23285 PF14583 Oligogalacturonate lyase JK088_23290 PF08021 Siderophore-interacting FAD-binding domain JK088_23290 PF04954 Siderophore-interacting protein JK088_23295 PF01810 LysE type translocator JK088_23300 PF01037 Lrp/AsnC ligand binding domain JK088_23320 PF13599 Pentapeptide repeats (9 copies) JK088_23325 PF03922 OmpW family JK088_23330 PF13533 Biotin-lipoyl like JK088_23335 PF07690 Major Facilitator Superfamily JK088_23345 PF12706 Beta-lactamase superfamily domain JK088_23355 PF01204 Trehalase JK088_23360 PF01661 Macro domain JK088_23365 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JK088_23370 PF03466 LysR substrate binding domain JK088_23370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_23380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_23380 PF03466 LysR substrate binding domain JK088_23385 PF04055 Radical SAM superfamily JK088_23385 PF13186 Iron-sulfur cluster-binding domain JK088_23390 PF00884 Sulfatase JK088_23395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_23395 PF03466 LysR substrate binding domain JK088_23400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_23400 PF03466 LysR substrate binding domain JK088_23415 PF13419 Haloacid dehalogenase-like hydrolase JK088_23440 PF05651 Putative sugar diacid recognition JK088_23440 PF13556 PucR C-terminal helix-turn-helix domain JK088_23440 PF17853 GGDEF-like domain JK088_23445 PF02447 GntP family permease JK088_23455 PF00392 Bacterial regulatory proteins, gntR family JK088_23455 PF00155 Aminotransferase class I and II JK088_23475 PF00583 Acetyltransferase (GNAT) family JK088_23500 PF03264 NapC/NirT cytochrome c family, N-terminal region JK088_23505 PF18364 Molybdopterin oxidoreductase N-terminal domain JK088_23505 PF00384 Molybdopterin oxidoreductase JK088_23505 PF01568 Molydopterin dinucleotide binding domain JK088_23515 PF02581 Thiamine monophosphate synthase JK088_23520 PF02110 Hydroxyethylthiazole kinase family JK088_23525 PF03070 TENA/THI-4/PQQC family JK088_23530 PF09084 NMT1/THI5 like JK088_23535 PF00528 Binding-protein-dependent transport system inner membrane component JK088_23545 PF08543 Phosphomethylpyrimidine kinase JK088_23550 PF01523 Putative modulator of DNA gyrase JK088_23555 PF01523 Putative modulator of DNA gyrase JK088_23560 PF04013 Putative SAM-dependent RNA methyltransferase JK088_23610 PF10928 Protein of unknown function (DUF2810) JK088_23615 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JK088_23615 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JK088_23625 PF03009 Glycerophosphoryl diester phosphodiesterase family JK088_23630 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JK088_23630 PF00056 lactate/malate dehydrogenase, NAD binding domain JK088_23635 PF00072 Response regulator receiver domain JK088_23635 PF00486 Transcriptional regulatory protein, C terminal JK088_23640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_23640 PF16750 Sensor domain of 2-component histidine kinase JK088_23640 PF00672 HAMP domain JK088_23640 PF00512 His Kinase A (phospho-acceptor) domain JK088_23645 PF07715 TonB-dependent Receptor Plug Domain JK088_23645 PF00593 TonB dependent receptor JK088_23655 PF01618 MotA/TolQ/ExbB proton channel family JK088_23660 PF01618 MotA/TolQ/ExbB proton channel family JK088_23665 PF02472 Biopolymer transport protein ExbD/TolR JK088_23705 PF01297 Zinc-uptake complex component A periplasmic JK088_23710 PF00005 ABC transporter JK088_23715 PF00950 ABC 3 transport family JK088_23730 PF00326 Prolyl oligopeptidase family JK088_23730 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JK088_23735 PF07690 Major Facilitator Superfamily JK088_23740 PF00491 Arginase family JK088_23745 PF17810 Arginine decarboxylase helical bundle domain JK088_23745 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JK088_23745 PF17944 Arginine decarboxylase C-terminal helical extension JK088_23750 PF00753 Metallo-beta-lactamase superfamily JK088_23755 PF18030 RimK PreATP-grasp domain JK088_23755 PF08443 RimK-like ATP-grasp domain JK088_23760 PF18030 RimK PreATP-grasp domain JK088_23760 PF08443 RimK-like ATP-grasp domain JK088_23765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_23765 PF03466 LysR substrate binding domain JK088_23790 PF00232 Glycosyl hydrolase family 1 JK088_23795 PF02743 Cache domain JK088_23795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JK088_23795 PF00512 His Kinase A (phospho-acceptor) domain JK088_23800 PF02954 Bacterial regulatory protein, Fis family JK088_23800 PF00072 Response regulator receiver domain JK088_23800 PF00158 Sigma-54 interaction domain JK088_23805 PF00990 Diguanylate cyclase, GGDEF domain JK088_23805 PF08448 PAS fold JK088_23810 PF05525 Branched-chain amino acid transport protein JK088_23825 PF01266 FAD dependent oxidoreductase JK088_23835 PF01212 Beta-eliminating lyase JK088_23850 PF07670 Nucleoside recognition JK088_23850 PF07662 Na+ dependent nucleoside transporter C-terminus JK088_23850 PF01773 Na+ dependent nucleoside transporter N-terminus JK088_23860 PF13532 2OG-Fe(II) oxygenase superfamily JK088_23865 PF00990 Diguanylate cyclase, GGDEF domain JK088_23865 PF05230 MASE2 domain JK088_23870 PF12729 Four helix bundle sensory module for signal transduction JK088_23870 PF00672 HAMP domain JK088_23870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JK088_23885 PF00990 Diguanylate cyclase, GGDEF domain JK088_23890 PF00875 DNA photolyase JK088_23890 PF03441 FAD binding domain of DNA photolyase JK088_23895 PF04244 Deoxyribodipyrimidine photo-lyase-related protein JK088_23900 PF04055 Radical SAM superfamily JK088_23900 PF00919 Uncharacterized protein family UPF0004 JK088_23910 PF01641 SelR domain JK088_23910 PF01625 Peptide methionine sulfoxide reductase JK088_23915 PF02566 OsmC-like protein JK088_23920 PF12464 Maltose acetyltransferase JK088_23920 PF14602 Hexapeptide repeat of succinyl-transferase JK088_23955 PF03466 LysR substrate binding domain JK088_23955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_23960 PF13419 Haloacid dehalogenase-like hydrolase JK088_23975 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) JK088_23980 PF00194 Eukaryotic-type carbonic anhydrase JK088_23985 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JK088_23990 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JK088_23995 PF12704 MacB-like periplasmic core domain JK088_23995 PF02687 FtsX-like permease family JK088_23995 PF00005 ABC transporter JK088_24000 PF02321 Outer membrane efflux protein JK088_24005 PF00657 GDSL-like Lipase/Acylhydrolase JK088_24010 PF05922 Peptidase inhibitor I9 JK088_24010 PF00082 Subtilase family JK088_24020 PF03611 PTS system sugar-specific permease component JK088_24030 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JK088_24035 PF00356 Bacterial regulatory proteins, lacI family JK088_24040 PF13419 Haloacid dehalogenase-like hydrolase JK088_24045 PF00202 Aminotransferase class-III JK088_24050 PF00266 Aminotransferase class-V JK088_24065 PF00005 ABC transporter JK088_24070 PF00528 Binding-protein-dependent transport system inner membrane component JK088_24075 PF07702 UTRA domain JK088_24075 PF00392 Bacterial regulatory proteins, gntR family JK088_24090 PF04393 Protein of unknown function (DUF535) JK088_24095 PF01266 FAD dependent oxidoreductase JK088_24100 PF00246 Zinc carboxypeptidase JK088_24100 PF18027 Cytosolic carboxypeptidase N-terminal domain JK088_24105 PF01389 OmpA-like transmembrane domain JK088_24105 PF00691 OmpA family JK088_24110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_24110 PF03466 LysR substrate binding domain JK088_24120 PF03466 LysR substrate binding domain JK088_24120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_24130 PF00854 POT family JK088_24135 PF03315 Serine dehydratase beta chain JK088_24135 PF03313 Serine dehydratase alpha chain JK088_24155 PF00133 tRNA synthetases class I (I, L, M and V) JK088_24155 PF08264 Anticodon-binding domain of tRNA JK088_24160 PF01464 Transglycosylase SLT domain JK088_24180 PF00460 Flagella basal body rod protein JK088_24185 PF00460 Flagella basal body rod protein JK088_24185 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JK088_24190 PF13861 FlgD Tudor-like domain JK088_24190 PF03963 Flagellar hook capping protein - N-terminal region JK088_24190 PF13860 FlgD Ig-like domain JK088_24195 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JK088_24195 PF00460 Flagella basal body rod protein JK088_24195 PF07559 Flagellar basal body protein FlaE JK088_24200 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JK088_24200 PF00460 Flagella basal body rod protein JK088_24205 PF00460 Flagella basal body rod protein JK088_24205 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JK088_24210 PF02107 Flagellar L-ring protein JK088_24215 PF02119 Flagellar P-ring protein JK088_24220 PF10135 Rod binding protein JK088_24220 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JK088_24225 PF00460 Flagella basal body rod protein JK088_24225 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JK088_24230 PF00669 Bacterial flagellin N-terminal helical region JK088_24250 PF01070 FMN-dependent dehydrogenase JK088_24275 PF00581 Rhodanese-like domain JK088_24280 PF00166 Chaperonin 10 Kd subunit JK088_24285 PF00118 TCP-1/cpn60 chaperonin family JK088_24300 PF01810 LysE type translocator JK088_24305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_24305 PF03466 LysR substrate binding domain JK088_24320 PF00440 Bacterial regulatory proteins, tetR family JK088_24320 PF08359 YsiA-like protein, C-terminal region JK088_24330 PF00149 Calcineurin-like phosphoesterase JK088_24330 PF02872 5'-nucleotidase, C-terminal domain JK088_24335 PF03060 Nitronate monooxygenase JK088_24350 PF03466 LysR substrate binding domain JK088_24350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JK088_24360 PF01625 Peptide methionine sulfoxide reductase JK088_24360 PF01641 SelR domain JK088_24365 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JK088_24370 PF08220 DeoR-like helix-turn-helix domain JK088_24370 PF00455 DeoR C terminal sensor domain JK088_24400 PF01751 Toprim domain JK088_24400 PF01131 DNA topoisomerase JK088_24420 PF13091 PLD-like domain JK088_24435 PF08401 Domain of unknown function (DUF1738) JK088_24435 PF13362 Toprim domain JK088_24435 PF18818 Metallopeptidase superfamily domain JK088_24445 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB JK088_24450 PF01381 Helix-turn-helix JK088_24455 PF06406 StbA protein JK088_24465 PF13614 AAA domain JK088_24485 PF01051 Initiator Replication protein JK088_24510 PF06114 IrrE N-terminal-like domain JK088_24570 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH JK088_24605 PF00990 Diguanylate cyclase, GGDEF domain JK088_24605 PF13426 PAS domain JK088_24605 PF00563 EAL domain JK088_24675 PF02899 Phage integrase, N-terminal SAM-like domain JK088_24675 PF00589 Phage integrase family JK088_24690 PF02753 Pili assembly chaperone PapD, C-terminal domain JK088_24690 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain JK088_24700 PF13954 PapC N-terminal domain JK088_24700 PF00577 Outer membrane usher protein JK088_24700 PF13953 PapC C-terminal domain JK088_24705 PF02753 Pili assembly chaperone PapD, C-terminal domain JK088_24705 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain JK088_24710 PF16970 Type-1 fimbrial protein, A JK088_24720 PF01368 DHH family JK088_24720 PF02833 DHHA2 domain JK088_24730 PF00113 Enolase, C-terminal TIM barrel domain JK088_24730 PF03952 Enolase, N-terminal domain JK088_24735 PF02537 CrcB-like protein, Camphor Resistance (CrcB) JK088_24740 PF02028 BCCT, betaine/carnitine/choline family transporter JK088_24755 PF01965 DJ-1/PfpI family JK088_24765 PF01292 Prokaryotic cytochrome b561 JK088_24775 PF01553 Acyltransferase JK088_24775 PF00501 AMP-binding enzyme JK088_24815 PF02203 Tar ligand binding domain homologue JK088_24815 PF00672 HAMP domain JK088_24815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JK088_24845 PF03135 CagE, TrbE, VirB family, component of type IV transporter system JK088_24880 PF03743 Bacterial conjugation TrbI-like protein JK088_24885 PF00437 Type II/IV secretion system protein