locus-tag class description JHS83_00005 PF00308 Bacterial dnaA protein JHS83_00005 PF08299 Bacterial dnaA protein helix-turn-helix JHS83_00005 PF11638 DnaA N-terminal domain JHS83_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain JHS83_00010 PF02767 DNA polymerase III beta subunit, central domain JHS83_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain JHS83_00015 PF02463 RecF/RecN/SMC N terminal domain JHS83_00020 PF00204 DNA gyrase B JHS83_00020 PF00986 DNA gyrase B subunit, carboxyl terminus JHS83_00020 PF18053 DNA gyrase B subunit insert domain JHS83_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_00020 PF01751 Toprim domain JHS83_00030 PF00011 Hsp20/alpha crystallin family JHS83_00035 PF00155 Aminotransferase class I and II JHS83_00040 PF00128 Alpha amylase, catalytic domain JHS83_00045 PF02092 Glycyl-tRNA synthetase beta subunit JHS83_00045 PF05746 DALR anticodon binding domain JHS83_00050 PF02091 Glycyl-tRNA synthetase alpha subunit JHS83_00055 PF01169 Uncharacterized protein family UPF0016 JHS83_00065 PF01206 Sulfurtransferase TusA JHS83_00075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_00075 PF03466 LysR substrate binding domain JHS83_00080 PF08240 Alcohol dehydrogenase GroES-like domain JHS83_00080 PF00107 Zinc-binding dehydrogenase JHS83_00085 PF02803 Thiolase, C-terminal domain JHS83_00085 PF00108 Thiolase, N-terminal domain JHS83_00090 PF00378 Enoyl-CoA hydratase/isomerase JHS83_00090 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JHS83_00090 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JHS83_00095 PF01205 Uncharacterized protein family UPF0029 JHS83_00095 PF09186 Domain of unknown function (DUF1949) JHS83_00100 PF02386 Cation transport protein JHS83_00105 PF12724 Flavodoxin domain JHS83_00140 PF03466 LysR substrate binding domain JHS83_00140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_00145 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain JHS83_00145 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain JHS83_00150 PF04380 Membrane fusogenic activity JHS83_00155 PF00873 AcrB/AcrD/AcrF family JHS83_00160 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS83_00165 PF16295 Tetracyclin repressor-like, C-terminal domain JHS83_00165 PF00440 Bacterial regulatory proteins, tetR family JHS83_00170 PF13361 UvrD-like helicase C-terminal domain JHS83_00170 PF00580 UvrD/REP helicase N-terminal domain JHS83_00175 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JHS83_00205 PF13419 Haloacid dehalogenase-like hydrolase JHS83_00210 PF00005 ABC transporter JHS83_00210 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS83_00215 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JHS83_00220 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_00225 PF12911 N-terminal TM domain of oligopeptide transport permease C JHS83_00225 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_00255 PF00069 Protein kinase domain JHS83_00260 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JHS83_00260 PF00356 Bacterial regulatory proteins, lacI family JHS83_00265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_00265 PF03466 LysR substrate binding domain JHS83_00270 PF00893 Small Multidrug Resistance protein JHS83_00275 PF00893 Small Multidrug Resistance protein JHS83_00280 PF00920 Dehydratase family JHS83_00285 PF01202 Shikimate kinase JHS83_00290 PF02447 GntP family permease JHS83_00295 PF01081 KDPG and KHG aldolase JHS83_00300 PF01048 Phosphorylase superfamily JHS83_00305 PF03466 LysR substrate binding domain JHS83_00305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_00310 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS83_00310 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JHS83_00315 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ JHS83_00320 PF01432 Peptidase family M3 JHS83_00325 PF01037 Lrp/AsnC ligand binding domain JHS83_00330 PF08448 PAS fold JHS83_00330 PF00990 Diguanylate cyclase, GGDEF domain JHS83_00330 PF00563 EAL domain JHS83_00335 PF04445 Putative SAM-dependent methyltransferase JHS83_00345 PF00892 EamA-like transporter family JHS83_00350 PF00582 Universal stress protein family JHS83_00355 PF00210 Ferritin-like domain JHS83_00360 PF10625 Universal stress protein B (UspB) JHS83_00370 PF00158 Sigma-54 interaction domain JHS83_00370 PF02954 Bacterial regulatory protein, Fis family JHS83_00370 PF01590 GAF domain JHS83_00375 PF04972 BON domain JHS83_00395 PF00781 Diacylglycerol kinase catalytic domain JHS83_00425 PF01594 AI-2E family transporter JHS83_00430 PF00990 Diguanylate cyclase, GGDEF domain JHS83_00430 PF03707 Bacterial signalling protein N terminal repeat JHS83_00430 PF00563 EAL domain JHS83_00440 PF02646 RmuC family JHS83_00445 PF01209 ubiE/COQ5 methyltransferase family JHS83_00450 PF02036 SCP-2 sterol transfer family JHS83_00455 PF03109 ABC1 family JHS83_00460 PF02416 mttA/Hcf106 family JHS83_00465 PF02416 mttA/Hcf106 family JHS83_00470 PF00902 Sec-independent protein translocase protein (TatC) JHS83_00475 PF01026 TatD related DNase JHS83_00480 PF00490 Delta-aminolevulinic acid dehydratase JHS83_00495 PF01367 5'-3' exonuclease, C-terminal SAM fold JHS83_00495 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JHS83_00495 PF00476 DNA polymerase family A JHS83_00495 PF01612 3'-5' exonuclease JHS83_00500 PF01926 50S ribosome-binding GTPase JHS83_00505 PF00034 Cytochrome c JHS83_00515 PF04220 Der GTPase activator (YihI) JHS83_00520 PF10675 Protein of unknown function (DUF2489) JHS83_00525 PF06969 HemN C-terminal domain JHS83_00525 PF04055 Radical SAM superfamily JHS83_00530 PF00962 Adenosine/AMP deaminase JHS83_00535 PF00990 Diguanylate cyclase, GGDEF domain JHS83_00535 PF00563 EAL domain JHS83_00535 PF03707 Bacterial signalling protein N terminal repeat JHS83_00540 PF02954 Bacterial regulatory protein, Fis family JHS83_00540 PF00072 Response regulator receiver domain JHS83_00540 PF00158 Sigma-54 interaction domain JHS83_00545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_00545 PF00512 His Kinase A (phospho-acceptor) domain JHS83_00545 PF00989 PAS fold JHS83_00555 PF00120 Glutamine synthetase, catalytic domain JHS83_00555 PF03951 Glutamine synthetase, beta-Grasp domain JHS83_00560 PF00679 Elongation factor G C-terminus JHS83_00560 PF03144 Elongation factor Tu domain 2 JHS83_00560 PF00009 Elongation factor Tu GTP binding domain JHS83_00575 PF03631 Virulence factor BrkB JHS83_00580 PF02580 D-Tyr-tRNA(Tyr) deacylase JHS83_00585 PF09500 Putative thioesterase (yiiD_Cterm) JHS83_00585 PF00583 Acetyltransferase (GNAT) family JHS83_00595 PF01293 Phosphoenolpyruvate carboxykinase JHS83_00600 PF01430 Hsp33 protein JHS83_00605 PF01479 S4 domain JHS83_00610 PF11356 Type II secretion system protein C JHS83_00615 PF00263 Bacterial type II and III secretion system protein JHS83_00615 PF03958 Bacterial type II/III secretion system short domain JHS83_00620 PF00437 Type II/IV secretion system protein JHS83_00625 PF00482 Type II secretion system (T2SS), protein F JHS83_00630 PF07963 Prokaryotic N-terminal methylation motif JHS83_00630 PF08334 Type II secretion system (T2SS), protein G JHS83_00635 PF12019 Type II transport protein GspH JHS83_00640 PF07963 Prokaryotic N-terminal methylation motif JHS83_00640 PF02501 Type II secretion system (T2SS), protein I JHS83_00645 PF11612 Type II secretion system (T2SS), protein J JHS83_00645 PF07963 Prokaryotic N-terminal methylation motif JHS83_00650 PF03934 Type II secretion system (T2SS), protein K JHS83_00655 PF05134 Type II secretion system (T2SS), protein L JHS83_00655 PF12693 GspL periplasmic domain JHS83_00660 PF04612 Type II secretion system (T2SS), protein M JHS83_00665 PF01203 Type II secretion system (T2SS), protein N JHS83_00670 PF00459 Inositol monophosphatase family JHS83_00675 PF00293 NUDIX domain JHS83_00680 PF01521 Iron-sulphur cluster biosynthesis JHS83_00680 PF01106 NifU-like domain JHS83_00685 PF00156 Phosphoribosyl transferase domain JHS83_00690 PF00561 alpha/beta hydrolase fold JHS83_00700 PF00575 S1 RNA binding domain JHS83_00700 PF16921 Tex protein YqgF-like domain JHS83_00700 PF17674 HHH domain JHS83_00700 PF09371 Tex-like protein N-terminal domain JHS83_00710 PF03449 Transcription elongation factor, N-terminal JHS83_00710 PF01272 Transcription elongation factor, GreA/GreB, C-term JHS83_00720 PF00486 Transcriptional regulatory protein, C terminal JHS83_00720 PF00072 Response regulator receiver domain JHS83_00725 PF00672 HAMP domain JHS83_00725 PF00512 His Kinase A (phospho-acceptor) domain JHS83_00725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_00730 PF00860 Permease family JHS83_00735 PF17191 RecG wedge domain JHS83_00735 PF00271 Helicase conserved C-terminal domain JHS83_00735 PF00270 DEAD/DEAH box helicase JHS83_00740 PF00588 SpoU rRNA Methylase family JHS83_00740 PF12105 SpoU, rRNA methylase, C-terminal JHS83_00745 PF13291 ACT domain JHS83_00745 PF02824 TGS domain JHS83_00745 PF04607 Region found in RelA / SpoT proteins JHS83_00750 PF01192 RNA polymerase Rpb6 JHS83_00755 PF00625 Guanylate kinase JHS83_00775 PF02472 Biopolymer transport protein ExbD/TolR JHS83_00780 PF01618 MotA/TolQ/ExbB proton channel family JHS83_00795 PF07715 TonB-dependent Receptor Plug Domain JHS83_00795 PF00593 TonB dependent receptor JHS83_00800 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_00810 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JHS83_00815 PF00005 ABC transporter JHS83_00815 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS83_00820 PF00005 ABC transporter JHS83_00820 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS83_00830 PF08340 Domain of unknown function (DUF1732) JHS83_00830 PF03755 YicC-like family, N-terminal region JHS83_00835 PF01138 3' exoribonuclease family, domain 1 JHS83_00835 PF03725 3' exoribonuclease family, domain 2 JHS83_00840 PF00156 Phosphoribosyl transferase domain JHS83_00845 PF03279 Bacterial lipid A biosynthesis acyltransferase JHS83_00850 PF00440 Bacterial regulatory proteins, tetR family JHS83_00855 PF04127 DNA / pantothenate metabolism flavoprotein JHS83_00855 PF02441 Flavoprotein JHS83_00860 PF00672 HAMP domain JHS83_00860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS83_00860 PF17200 Single Cache domain 2 JHS83_00865 PF04002 RadC-like JAB domain JHS83_00870 PF00830 Ribosomal L28 family JHS83_00875 PF00471 Ribosomal protein L33 JHS83_00880 PF00884 Sulfatase JHS83_00890 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JHS83_00890 PF06827 Zinc finger found in FPG and IleRS JHS83_00890 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JHS83_00895 PF01467 Cytidylyltransferase-like JHS83_00900 PF05686 Glycosyl transferase family 90 JHS83_00905 PF00535 Glycosyl transferase family 2 JHS83_00910 PF00535 Glycosyl transferase family 2 JHS83_00915 PF01075 Glycosyltransferase family 9 (heptosyltransferase) JHS83_00920 PF01219 Prokaryotic diacylglycerol kinase JHS83_00930 PF02719 Polysaccharide biosynthesis protein JHS83_00935 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JHS83_00940 PF02350 UDP-N-acetylglucosamine 2-epimerase JHS83_00945 PF03102 NeuB family JHS83_00945 PF08666 SAF domain JHS83_00955 PF00483 Nucleotidyl transferase JHS83_00960 PF13472 GDSL-like Lipase/Acylhydrolase family JHS83_00960 PF02348 Cytidylyltransferase JHS83_00970 PF00202 Aminotransferase class-III JHS83_00975 PF00795 Carbon-nitrogen hydrolase JHS83_01000 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) JHS83_01005 PF01075 Glycosyltransferase family 9 (heptosyltransferase) JHS83_01010 PF03279 Bacterial lipid A biosynthesis acyltransferase JHS83_01015 PF01370 NAD dependent epimerase/dehydratase family JHS83_01020 PF06082 Exopolysaccharide biosynthesis protein YbjH JHS83_01055 PF16363 GDP-mannose 4,6 dehydratase JHS83_01060 PF00483 Nucleotidyl transferase JHS83_01065 PF04321 RmlD substrate binding domain JHS83_01070 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase JHS83_01075 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JHS83_01075 PF01565 FAD binding domain JHS83_01090 PF01501 Glycosyl transferase family 8 JHS83_01100 PF00535 Glycosyl transferase family 2 JHS83_01100 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 JHS83_01105 PF09318 Glycosyl transferase 1 domain A JHS83_01105 PF00534 Glycosyl transferases group 1 JHS83_01110 PF00535 Glycosyl transferase family 2 JHS83_01115 PF00132 Bacterial transferase hexapeptide (six repeats) JHS83_01135 PF00953 Glycosyl transferase family 4 JHS83_01140 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JHS83_01140 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JHS83_01140 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JHS83_01145 PF00483 Nucleotidyl transferase JHS83_01150 PF10996 Beta-Casp domain JHS83_01150 PF00753 Metallo-beta-lactamase superfamily JHS83_01150 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain JHS83_01155 PF00121 Triosephosphate isomerase JHS83_01175 PF00455 DeoR C terminal sensor domain JHS83_01175 PF08220 DeoR-like helix-turn-helix domain JHS83_01180 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded JHS83_01185 PF06005 Cell division protein ZapB JHS83_01190 PF03737 Aldolase/RraA JHS83_01195 PF01040 UbiA prenyltransferase family JHS83_01200 PF00004 ATPase family associated with various cellular activities (AAA) JHS83_01200 PF07724 AAA domain (Cdc48 subfamily) JHS83_01205 PF00227 Proteasome subunit JHS83_01215 PF00356 Bacterial regulatory proteins, lacI family JHS83_01220 PF18319 PriA DNA helicase Cys-rich region (CRR) domain JHS83_01220 PF00270 DEAD/DEAH box helicase JHS83_01220 PF00271 Helicase conserved C-terminal domain JHS83_01220 PF17764 3′ DNA-binding domain (3′BD) JHS83_01220 PF18074 Primosomal protein N C-terminal domain JHS83_01225 PF01197 Ribosomal protein L31 JHS83_01230 PF00338 Ribosomal protein S10p/S20e JHS83_01235 PF00297 Ribosomal protein L3 JHS83_01240 PF00573 Ribosomal protein L4/L1 family JHS83_01245 PF00276 Ribosomal protein L23 JHS83_01250 PF00181 Ribosomal Proteins L2, RNA binding domain JHS83_01250 PF03947 Ribosomal Proteins L2, C-terminal domain JHS83_01255 PF00203 Ribosomal protein S19 JHS83_01260 PF00237 Ribosomal protein L22p/L17e JHS83_01265 PF07650 KH domain JHS83_01265 PF00189 Ribosomal protein S3, C-terminal domain JHS83_01270 PF00252 Ribosomal protein L16p/L10e JHS83_01275 PF00831 Ribosomal L29 protein JHS83_01280 PF00366 Ribosomal protein S17 JHS83_01285 PF00238 Ribosomal protein L14p/L23e JHS83_01290 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JHS83_01290 PF00467 KOW motif JHS83_01295 PF00281 Ribosomal protein L5 JHS83_01295 PF00673 ribosomal L5P family C-terminus JHS83_01300 PF00253 Ribosomal protein S14p/S29e JHS83_01305 PF00410 Ribosomal protein S8 JHS83_01310 PF00347 Ribosomal protein L6 JHS83_01315 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JHS83_01320 PF03719 Ribosomal protein S5, C-terminal domain JHS83_01320 PF00333 Ribosomal protein S5, N-terminal domain JHS83_01325 PF00327 Ribosomal protein L30p/L7e JHS83_01330 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A JHS83_01335 PF00344 SecY translocase JHS83_01340 PF00444 Ribosomal protein L36 JHS83_01345 PF00416 Ribosomal protein S13/S18 JHS83_01350 PF00411 Ribosomal protein S11 JHS83_01355 PF00163 Ribosomal protein S4/S9 N-terminal domain JHS83_01355 PF01479 S4 domain JHS83_01360 PF01000 RNA polymerase Rpb3/RpoA insert domain JHS83_01360 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain JHS83_01360 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain JHS83_01365 PF01196 Ribosomal protein L17 JHS83_01375 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JHS83_01375 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JHS83_01385 PF13673 Acetyltransferase (GNAT) domain JHS83_01390 PF03880 DbpA RNA binding domain JHS83_01390 PF00271 Helicase conserved C-terminal domain JHS83_01390 PF00270 DEAD/DEAH box helicase JHS83_01400 PF00149 Calcineurin-like phosphoesterase JHS83_01400 PF02872 5'-nucleotidase, C-terminal domain JHS83_01405 PF10414 Sirohaem synthase dimerisation region JHS83_01405 PF14824 Sirohaem biosynthesis protein central JHS83_01405 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JHS83_01410 PF01507 Phosphoadenosine phosphosulfate reductase family JHS83_01415 PF00009 Elongation factor Tu GTP binding domain JHS83_01420 PF03600 Citrate transporter JHS83_01420 PF02080 TrkA-C domain JHS83_01445 PF00005 ABC transporter JHS83_01455 PF10795 Protein of unknown function (DUF2607) JHS83_01460 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) JHS83_01465 PF06526 Protein of unknown function (DUF1107) JHS83_01470 PF01625 Peptide methionine sulfoxide reductase JHS83_01475 PF01103 Surface antigen JHS83_01475 PF17243 POTRA domain TamA domain 1 JHS83_01480 PF04357 TamB, inner membrane protein subunit of TAM complex JHS83_01485 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like JHS83_01495 PF00719 Inorganic pyrophosphatase JHS83_01500 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain JHS83_01505 PF08245 Mur ligase middle domain JHS83_01505 PF01225 Mur ligase family, catalytic domain JHS83_01505 PF02875 Mur ligase family, glutamate ligase domain JHS83_01510 PF02441 Flavoprotein JHS83_01520 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_01525 PF00005 ABC transporter JHS83_01540 PF16868 NMT1-like family JHS83_01545 PF01316 Arginine repressor, DNA binding domain JHS83_01545 PF02863 Arginine repressor, C-terminal domain JHS83_01550 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JHS83_01550 PF00056 lactate/malate dehydrogenase, NAD binding domain JHS83_01560 PF00348 Polyprenyl synthetase JHS83_01565 PF00829 Ribosomal prokaryotic L21 protein JHS83_01570 PF01016 Ribosomal L27 protein JHS83_01575 PF01018 GTP1/OBG JHS83_01575 PF01926 50S ribosome-binding GTPase JHS83_01580 PF06738 Putative threonine/serine exporter JHS83_01585 PF12821 Threonine/Serine exporter, ThrE JHS83_01590 PF00186 Dihydrofolate reductase JHS83_01595 PF00149 Calcineurin-like phosphoesterase JHS83_01600 PF04379 ApaG domain JHS83_01605 PF00398 Ribosomal RNA adenine dimethylase JHS83_01610 PF04166 Pyridoxal phosphate biosynthetic protein PdxA JHS83_01615 PF09312 SurA N-terminal domain JHS83_01625 PF00226 DnaJ domain JHS83_01625 PF05099 Tellurite resistance protein TerB JHS83_01635 PF00694 Aconitase C-terminal domain JHS83_01660 PF01569 PAP2 superfamily JHS83_01670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_01670 PF03466 LysR substrate binding domain JHS83_01675 PF00501 AMP-binding enzyme JHS83_01680 PF00205 Thiamine pyrophosphate enzyme, central domain JHS83_01680 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JHS83_01680 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JHS83_01685 PF10369 Small subunit of acetolactate synthase JHS83_01690 PF00990 Diguanylate cyclase, GGDEF domain JHS83_01700 PF02887 Pyruvate kinase, alpha/beta domain JHS83_01700 PF00224 Pyruvate kinase, barrel domain JHS83_01705 PF08220 DeoR-like helix-turn-helix domain JHS83_01705 PF00455 DeoR C terminal sensor domain JHS83_01710 PF01380 SIS domain JHS83_01720 PF00072 Response regulator receiver domain JHS83_01720 PF00486 Transcriptional regulatory protein, C terminal JHS83_01725 PF00672 HAMP domain JHS83_01725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_01725 PF00512 His Kinase A (phospho-acceptor) domain JHS83_01730 PF13419 Haloacid dehalogenase-like hydrolase JHS83_01735 PF05068 Mannitol repressor JHS83_01740 PF08125 Mannitol dehydrogenase C-terminal domain JHS83_01740 PF01232 Mannitol dehydrogenase Rossmann domain JHS83_01745 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JHS83_01745 PF02378 Phosphotransferase system, EIIC JHS83_01745 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JHS83_01775 PF03180 NLPA lipoprotein JHS83_01815 PF01420 Type I restriction modification DNA specificity domain JHS83_01820 PF12161 HsdM N-terminal domain JHS83_01820 PF02384 N-6 DNA Methylase JHS83_01840 PF01555 DNA methylase JHS83_01845 PF04851 Type III restriction enzyme, res subunit JHS83_01845 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) JHS83_01845 PF08463 EcoEI R protein C-terminal JHS83_01845 PF00271 Helicase conserved C-terminal domain JHS83_01875 PF13657 HipA N-terminal domain JHS83_01875 PF07804 HipA-like C-terminal domain JHS83_01890 PF03979 Sigma-70 factor, region 1.1 JHS83_01890 PF04546 Sigma-70, non-essential region JHS83_01890 PF00140 Sigma-70 factor, region 1.2 JHS83_01890 PF04542 Sigma-70 region 2 JHS83_01890 PF04539 Sigma-70 region 3 JHS83_01890 PF04545 Sigma-70, region 4 JHS83_01895 PF10410 DnaB-helicase binding domain of primase JHS83_01895 PF08278 DNA primase DnaG DnaB-binding JHS83_01895 PF01807 CHC2 zinc finger JHS83_01895 PF08275 DNA primase catalytic core, N-terminal domain JHS83_01900 PF09424 Yqey-like protein JHS83_01905 PF01165 Ribosomal protein S21 JHS83_01910 PF00814 Glycoprotease family JHS83_01915 PF12697 Alpha/beta hydrolase family JHS83_01920 PF02660 Glycerol-3-phosphate acyltransferase JHS83_01925 PF02152 Dihydroneopterin aldolase JHS83_01930 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JHS83_01935 PF02673 Bacitracin resistance protein BacA JHS83_01940 PF01966 HD domain JHS83_01940 PF01743 Poly A polymerase head domain JHS83_01940 PF12627 Probable RNA and SrmB- binding site of polymerase A JHS83_01945 PF13401 AAA domain JHS83_01945 PF01471 Putative peptidoglycan binding domain JHS83_01955 PF08239 Bacterial SH3 domain JHS83_01960 PF01384 Phosphate transporter family JHS83_01965 PF01865 Protein of unknown function DUF47 JHS83_01970 PF01928 CYTH domain JHS83_01980 PF00672 HAMP domain JHS83_01980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS83_01985 PF03710 Glutamate-ammonia ligase adenylyltransferase JHS83_01985 PF08335 GlnD PII-uridylyltransferase JHS83_01990 PF01467 Cytidylyltransferase-like JHS83_01990 PF00294 pfkB family carbohydrate kinase JHS83_01995 PF02321 Outer membrane efflux protein JHS83_02000 PF00293 NUDIX domain JHS83_02005 PF06853 Protein of unknown function (DUF1249) JHS83_02010 PF00149 Calcineurin-like phosphoesterase JHS83_02015 PF05728 Uncharacterised protein family (UPF0227) JHS83_02020 PF01751 Toprim domain JHS83_02020 PF00204 DNA gyrase B JHS83_02020 PF00986 DNA gyrase B subunit, carboxyl terminus JHS83_02020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_02025 PF00521 DNA gyrase/topoisomerase IV, subunit A JHS83_02025 PF03989 DNA gyrase C-terminal domain, beta-propeller JHS83_02030 PF13180 PDZ domain JHS83_02035 PF00595 PDZ domain JHS83_02040 PF06295 Protein of unknown function (DUF1043) JHS83_02045 PF03969 AFG1-like ATPase JHS83_02050 PF00572 Ribosomal protein L13 JHS83_02055 PF00380 Ribosomal protein S9/S16 JHS83_02060 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal JHS83_02060 PF00355 Rieske [2Fe-2S] domain JHS83_02065 PF00033 Cytochrome b/b6/petB JHS83_02065 PF00032 Cytochrome b(C-terminal)/b6/petD JHS83_02070 PF02167 Cytochrome C1 family JHS83_02075 PF00043 Glutathione S-transferase, C-terminal domain JHS83_02075 PF02798 Glutathione S-transferase, N-terminal domain JHS83_02080 PF04386 Stringent starvation protein B JHS83_02085 PF04972 BON domain JHS83_02090 PF13580 SIS domain JHS83_02095 PF02021 Uncharacterised protein family UPF0102 JHS83_02100 PF04348 LppC putative lipoprotein JHS83_02105 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JHS83_02115 PF01795 MraW methylase family JHS83_02120 PF04999 Cell division protein FtsL JHS83_02125 PF03717 Penicillin-binding Protein dimerisation domain JHS83_02125 PF00905 Penicillin binding protein transpeptidase domain JHS83_02130 PF02875 Mur ligase family, glutamate ligase domain JHS83_02130 PF08245 Mur ligase middle domain JHS83_02130 PF01225 Mur ligase family, catalytic domain JHS83_02135 PF01225 Mur ligase family, catalytic domain JHS83_02135 PF02875 Mur ligase family, glutamate ligase domain JHS83_02135 PF08245 Mur ligase middle domain JHS83_02140 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 JHS83_02140 PF00953 Glycosyl transferase family 4 JHS83_02145 PF08245 Mur ligase middle domain JHS83_02145 PF02875 Mur ligase family, glutamate ligase domain JHS83_02150 PF01098 Cell cycle protein JHS83_02155 PF04101 Glycosyltransferase family 28 C-terminal domain JHS83_02155 PF03033 Glycosyltransferase family 28 N-terminal domain JHS83_02160 PF01225 Mur ligase family, catalytic domain JHS83_02160 PF02875 Mur ligase family, glutamate ligase domain JHS83_02160 PF08245 Mur ligase middle domain JHS83_02165 PF03799 Cell division protein FtsQ JHS83_02165 PF08478 POTRA domain, FtsQ-type JHS83_02170 PF02491 SHS2 domain inserted in FTSA JHS83_02175 PF00091 Tubulin/FtsZ family, GTPase domain JHS83_02175 PF12327 FtsZ family, C-terminal domain JHS83_02180 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase JHS83_02190 PF07516 SecA Wing and Scaffold domain JHS83_02190 PF02810 SEC-C motif JHS83_02190 PF01043 SecA preprotein cross-linking domain JHS83_02190 PF07517 SecA DEAD-like domain JHS83_02195 PF00293 NUDIX domain JHS83_02200 PF05173 Dihydrodipicolinate reductase, C-terminus JHS83_02200 PF01113 Dihydrodipicolinate reductase, N-terminus JHS83_02205 PF00117 Glutamine amidotransferase class-I JHS83_02205 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain JHS83_02210 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain JHS83_02210 PF02142 MGS-like domain JHS83_02210 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JHS83_02225 PF01925 Sulfite exporter TauE/SafE JHS83_02230 PF03466 LysR substrate binding domain JHS83_02230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_02235 PF03458 UPF0126 domain JHS83_02240 PF01497 Periplasmic binding protein JHS83_02245 PF17113 Regulatory signalling modulator protein AmpE JHS83_02245 PF03186 CobD/Cbib protein JHS83_02250 PF01048 Phosphorylase superfamily JHS83_02260 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS83_02260 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JHS83_02265 PF01493 GXGXG motif JHS83_02265 PF01645 Conserved region in glutamate synthase JHS83_02265 PF04898 Glutamate synthase central domain JHS83_02265 PF00310 Glutamine amidotransferases class-II JHS83_02270 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JHS83_02270 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS83_02275 PF00310 Glutamine amidotransferases class-II JHS83_02275 PF04898 Glutamate synthase central domain JHS83_02275 PF01645 Conserved region in glutamate synthase JHS83_02275 PF01493 GXGXG motif JHS83_02280 PF16199 Radical_SAM C-terminal domain JHS83_02280 PF04055 Radical SAM superfamily JHS83_02285 PF01590 GAF domain JHS83_02285 PF00990 Diguanylate cyclase, GGDEF domain JHS83_02285 PF00360 Phytochrome region JHS83_02285 PF00563 EAL domain JHS83_02290 PF00989 PAS fold JHS83_02290 PF00072 Response regulator receiver domain JHS83_02290 PF18415 Histidine kinase receptor ArcB trans-membrane domain JHS83_02290 PF00512 His Kinase A (phospho-acceptor) domain JHS83_02290 PF01627 Hpt domain JHS83_02290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_02300 PF00072 Response regulator receiver domain JHS83_02300 PF00486 Transcriptional regulatory protein, C terminal JHS83_02310 PF03737 Aldolase/RraA JHS83_02320 PF03447 Homoserine dehydrogenase, NAD binding domain JHS83_02320 PF13840 ACT domain JHS83_02320 PF01842 ACT domain JHS83_02320 PF00696 Amino acid kinase family JHS83_02320 PF00742 Homoserine dehydrogenase JHS83_02325 PF00288 GHMP kinases N terminal domain JHS83_02325 PF08544 GHMP kinases C terminal JHS83_02330 PF00291 Pyridoxal-phosphate dependent enzyme JHS83_02330 PF14821 Threonine synthase N terminus JHS83_02335 PF01228 Glycine radical JHS83_02340 PF01261 Xylose isomerase-like TIM barrel JHS83_02345 PF03167 Uracil DNA glycosylase superfamily JHS83_02360 PF01235 Sodium:alanine symporter family JHS83_02365 PF03883 Peroxide stress protein YaaA JHS83_02370 PF00271 Helicase conserved C-terminal domain JHS83_02370 PF00270 DEAD/DEAH box helicase JHS83_02375 PF05175 Methyltransferase small domain JHS83_02380 PF05525 Branched-chain amino acid transport protein JHS83_02385 PF00258 Flavodoxin JHS83_02390 PF02899 Phage integrase, N-terminal SAM-like domain JHS83_02390 PF00589 Phage integrase family JHS83_02395 PF10411 Disulfide bond isomerase protein N-terminus JHS83_02395 PF13098 Thioredoxin-like domain JHS83_02400 PF02272 DHHA1 domain JHS83_02400 PF17768 RecJ OB domain JHS83_02400 PF01368 DHH family JHS83_02410 PF00152 tRNA synthetases class II (D, K and N) JHS83_02410 PF01336 OB-fold nucleic acid binding domain JHS83_02415 PF02954 Bacterial regulatory protein, Fis family JHS83_02415 PF00072 Response regulator receiver domain JHS83_02415 PF00158 Sigma-54 interaction domain JHS83_02425 PF00248 Aldo/keto reductase family JHS83_02435 PF02976 DNA mismatch repair enzyme MutH JHS83_02440 PF00293 NUDIX domain JHS83_02445 PF02896 PEP-utilising enzyme, TIM barrel domain JHS83_02445 PF05524 PEP-utilising enzyme, N-terminal JHS83_02445 PF01590 GAF domain JHS83_02445 PF00391 PEP-utilising enzyme, mobile domain JHS83_02450 PF01925 Sulfite exporter TauE/SafE JHS83_02455 PF01790 Prolipoprotein diacylglyceryl transferase JHS83_02460 PF00303 Thymidylate synthase JHS83_02470 PF02690 Na+/Pi-cotransporter JHS83_02475 PF03466 LysR substrate binding domain JHS83_02475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_02480 PF01022 Bacterial regulatory protein, arsR family JHS83_02485 PF01649 Ribosomal protein S20 JHS83_02490 PF03023 Lipid II flippase MurJ JHS83_02495 PF06574 FAD synthetase JHS83_02495 PF01687 Riboflavin kinase JHS83_02500 PF08264 Anticodon-binding domain of tRNA JHS83_02500 PF00133 tRNA synthetases class I (I, L, M and V) JHS83_02500 PF06827 Zinc finger found in FPG and IleRS JHS83_02505 PF01252 Signal peptidase (SPase) II JHS83_02510 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JHS83_02515 PF02401 LytB protein JHS83_02520 PF04397 LytTr DNA-binding domain JHS83_02520 PF00072 Response regulator receiver domain JHS83_02525 PF06580 Histidine kinase JHS83_02525 PF07694 5TMR of 5TMR-LYT JHS83_02530 PF02554 Carbon starvation protein CstA JHS83_02545 PF13580 SIS domain JHS83_02550 PF03702 Anhydro-N-acetylmuramic acid kinase JHS83_02555 PF00933 Glycosyl hydrolase family 3 N terminal domain JHS83_02560 PF00793 DAHP synthetase I family JHS83_02565 PF01817 Chorismate mutase type II JHS83_02565 PF02153 Prephenate dehydrogenase JHS83_02570 PF04225 Opacity-associated protein A LysM-like domain JHS83_02570 PF01551 Peptidase family M23 JHS83_02575 PF07238 PilZ domain JHS83_02580 PF12848 ABC transporter JHS83_02580 PF00005 ABC transporter JHS83_02585 PF01464 Transglycosylase SLT domain JHS83_02585 PF14718 Soluble lytic murein transglycosylase L domain JHS83_02590 PF01371 Trp repressor protein JHS83_02595 PF01931 Protein of unknown function DUF84 JHS83_02600 PF01817 Chorismate mutase type II JHS83_02600 PF00800 Prephenate dehydratase JHS83_02605 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JHS83_02610 PF01464 Transglycosylase SLT domain JHS83_02615 PF13525 Outer membrane lipoprotein JHS83_02620 PF00849 RNA pseudouridylate synthase JHS83_02620 PF01479 S4 domain JHS83_02625 PF02578 Multi-copper polyphenol oxidoreductase laccase JHS83_02630 PF00004 ATPase family associated with various cellular activities (AAA) JHS83_02630 PF07724 AAA domain (Cdc48 subfamily) JHS83_02630 PF17871 AAA lid domain JHS83_02630 PF02861 Clp amino terminal domain, pathogenicity island component JHS83_02630 PF10431 C-terminal, D2-small domain, of ClpB protein JHS83_02675 PF03411 Penicillin-insensitive murein endopeptidase JHS83_02685 PF00037 4Fe-4S binding domain JHS83_02690 PF16325 Peptidase family U32 C-terminal domain JHS83_02690 PF01136 Peptidase family U32 JHS83_02695 PF04381 Putative exonuclease, RdgC JHS83_02700 PF00072 Response regulator receiver domain JHS83_02700 PF00486 Transcriptional regulatory protein, C terminal JHS83_02705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_02705 PF00512 His Kinase A (phospho-acceptor) domain JHS83_02705 PF00989 PAS fold JHS83_02705 PF11808 Phosphate regulon sensor protein PhoR JHS83_02710 PF12849 PBP superfamily domain JHS83_02715 PF02541 Ppx/GppA phosphatase family JHS83_02720 PF02503 Polyphosphate kinase middle domain JHS83_02720 PF13090 Polyphosphate kinase C-terminal domain 2 JHS83_02720 PF17941 Polyphosphate kinase C-terminal domain 1 JHS83_02720 PF13089 Polyphosphate kinase N-terminal domain JHS83_02725 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_02730 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_02735 PF00005 ABC transporter JHS83_02740 PF01895 PhoU domain JHS83_02745 PF03976 Polyphosphate kinase 2 (PPK2) JHS83_02750 PF03932 CutC family JHS83_02755 PF10417 C-terminal domain of 1-Cys peroxiredoxin JHS83_02755 PF00578 AhpC/TSA family JHS83_02760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_02760 PF03466 LysR substrate binding domain JHS83_02765 PF01274 Malate synthase JHS83_02770 PF00463 Isocitrate lyase family JHS83_02775 PF00571 CBS domain JHS83_02785 PF02547 Queuosine biosynthesis protein JHS83_02790 PF01702 Queuine tRNA-ribosyltransferase JHS83_02795 PF02699 Preprotein translocase subunit JHS83_02800 PF13721 SecD export protein N-terminal TM region JHS83_02800 PF02355 Protein export membrane protein JHS83_02800 PF07549 SecD/SecF GG Motif JHS83_02805 PF02355 Protein export membrane protein JHS83_02805 PF07549 SecD/SecF GG Motif JHS83_02810 PF00459 Inositol monophosphatase family JHS83_02815 PF00588 SpoU rRNA Methylase family JHS83_02820 PF02082 Transcriptional regulator JHS83_02825 PF00266 Aminotransferase class-V JHS83_02830 PF01592 NifU-like N terminal domain JHS83_02835 PF01521 Iron-sulphur cluster biosynthesis JHS83_02840 PF07743 HSCB C-terminal oligomerisation domain JHS83_02840 PF00226 DnaJ domain JHS83_02845 PF00012 Hsp70 protein JHS83_02850 PF00111 2Fe-2S iron-sulfur cluster binding domain JHS83_02855 PF04384 Iron-sulphur cluster assembly JHS83_02860 PF12404 Peptidase JHS83_02860 PF00883 Cytosol aminopeptidase family, catalytic domain JHS83_02865 PF00334 Nucleoside diphosphate kinase JHS83_02870 PF04055 Radical SAM superfamily JHS83_02875 PF13464 Domain of unknown function (DUF4115) JHS83_02880 PF04551 GcpE protein JHS83_02885 PF03129 Anticodon binding domain JHS83_02885 PF13393 Histidyl-tRNA synthetase JHS83_02890 PF09976 Tetratricopeptide repeat-like domain JHS83_02895 PF13360 PQQ-like domain JHS83_02900 PF01926 50S ribosome-binding GTPase JHS83_02900 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JHS83_02915 PF02601 Exonuclease VII, large subunit JHS83_02915 PF13742 OB-fold nucleic acid binding domain JHS83_02920 PF00478 IMP dehydrogenase / GMP reductase domain JHS83_02920 PF00571 CBS domain JHS83_02925 PF00958 GMP synthase C terminal domain JHS83_02925 PF00117 Glutamine amidotransferase class-I JHS83_02925 PF02540 NAD synthase JHS83_02930 PF03553 Na+/H+ antiporter family JHS83_02935 PF06483 Chitinase C JHS83_02935 PF00704 Glycosyl hydrolases family 18 JHS83_02940 PF01184 GPR1/FUN34/yaaH family JHS83_02950 PF01235 Sodium:alanine symporter family JHS83_02955 PF01266 FAD dependent oxidoreductase JHS83_02960 PF03466 LysR substrate binding domain JHS83_02960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_02975 PF07969 Amidohydrolase family JHS83_02980 PF01053 Cys/Met metabolism PLP-dependent enzyme JHS83_02985 PF00202 Aminotransferase class-III JHS83_03005 PF00583 Acetyltransferase (GNAT) family JHS83_03005 PF00795 Carbon-nitrogen hydrolase JHS83_03010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_03010 PF03466 LysR substrate binding domain JHS83_03055 PF14659 Phage integrase, N-terminal SAM-like domain JHS83_03055 PF00589 Phage integrase family JHS83_03065 PF01668 SmpB protein JHS83_03070 PF03364 Polyketide cyclase / dehydrase and lipid transport JHS83_03075 PF03658 RnfH family Ubiquitin JHS83_03080 PF04355 SmpA / OmlA family JHS83_03085 PF02463 RecF/RecN/SMC N terminal domain JHS83_03095 PF01513 ATP-NAD kinase JHS83_03100 PF01025 GrpE JHS83_03105 PF00375 Sodium:dicarboxylate symporter family JHS83_03110 PF00012 Hsp70 protein JHS83_03115 PF00226 DnaJ domain JHS83_03115 PF01556 DnaJ C terminal domain JHS83_03115 PF00684 DnaJ central domain JHS83_03120 PF00114 Pilin (bacterial filament) JHS83_03120 PF07963 Prokaryotic N-terminal methylation motif JHS83_03125 PF07963 Prokaryotic N-terminal methylation motif JHS83_03125 PF00114 Pilin (bacterial filament) JHS83_03145 PF03806 AbgT putative transporter family JHS83_03150 PF14437 MafB19-like deaminase JHS83_03155 PF01464 Transglycosylase SLT domain JHS83_03155 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS83_03160 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal JHS83_03160 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain JHS83_03160 PF02769 AIR synthase related protein, C-terminal domain JHS83_03185 PF01546 Peptidase family M20/M25/M40 JHS83_03185 PF07687 Peptidase dimerisation domain JHS83_03190 PF00860 Permease family JHS83_03195 PF00156 Phosphoribosyl transferase domain JHS83_03200 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) JHS83_03205 PF07417 Sigma factor-binding transcriptional regulator Crl JHS83_03210 PF01472 PUA domain JHS83_03210 PF00696 Amino acid kinase family JHS83_03215 PF00171 Aldehyde dehydrogenase family JHS83_03220 PF03477 ATP cone domain JHS83_03225 PF01872 RibD C-terminal domain JHS83_03225 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JHS83_03230 PF00677 Lumazine binding domain JHS83_03235 PF00925 GTP cyclohydrolase II JHS83_03235 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JHS83_03240 PF00885 6,7-dimethyl-8-ribityllumazine synthase JHS83_03245 PF01029 NusB family JHS83_03250 PF00586 AIR synthase related protein, N-terminal domain JHS83_03250 PF02769 AIR synthase related protein, C-terminal domain JHS83_03255 PF04608 Phosphatidylglycerophosphatase A JHS83_03260 PF13292 1-deoxy-D-xylulose-5-phosphate synthase JHS83_03260 PF02779 Transketolase, pyrimidine binding domain JHS83_03260 PF02780 Transketolase, C-terminal domain JHS83_03265 PF00348 Polyprenyl synthetase JHS83_03270 PF02609 Exonuclease VII small subunit JHS83_03275 PF01618 MotA/TolQ/ExbB proton channel family JHS83_03280 PF00691 OmpA family JHS83_03285 PF02926 THUMP domain JHS83_03285 PF02568 Thiamine biosynthesis protein (ThiI) JHS83_03290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_03290 PF03466 LysR substrate binding domain JHS83_03300 PF04241 Protein of unknown function (DUF423) JHS83_03305 PF01728 FtsJ-like methyltransferase JHS83_03305 PF18125 RlmM ferredoxin-like domain JHS83_03310 PF01223 DNA/RNA non-specific endonuclease JHS83_03315 PF01367 5'-3' exonuclease, C-terminal SAM fold JHS83_03315 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JHS83_03320 PF11892 Domain of unknown function (DUF3412) JHS83_03320 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases JHS83_03320 PF03641 Possible lysine decarboxylase JHS83_03325 PF00990 Diguanylate cyclase, GGDEF domain JHS83_03335 PF14489 QueF-like protein JHS83_03335 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term JHS83_03340 PF07348 Syd protein (SUKH-2) JHS83_03345 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) JHS83_03350 PF03180 NLPA lipoprotein JHS83_03355 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_03360 PF00005 ABC transporter JHS83_03360 PF09383 NIL domain JHS83_03370 PF00356 Bacterial regulatory proteins, lacI family JHS83_03375 PF00367 phosphotransferase system, EIIB JHS83_03375 PF02378 Phosphotransferase system, EIIC JHS83_03380 PF16657 Maltogenic Amylase, C-terminal domain JHS83_03380 PF00128 Alpha amylase, catalytic domain JHS83_03395 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JHS83_03395 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JHS83_03400 PF00464 Serine hydroxymethyltransferase JHS83_03405 PF04055 Radical SAM superfamily JHS83_03405 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family JHS83_03410 PF03099 Biotin/lipoate A/B protein ligase family JHS83_03415 PF04359 Protein of unknown function (DUF493) JHS83_03420 PF07943 Penicillin-binding protein 5, C-terminal domain JHS83_03420 PF00768 D-alanyl-D-alanine carboxypeptidase JHS83_03425 PF05036 Sporulation related domain JHS83_03425 PF03330 Lytic transglycolase JHS83_03430 PF01098 Cell cycle protein JHS83_03435 PF00905 Penicillin binding protein transpeptidase domain JHS83_03435 PF03717 Penicillin-binding Protein dimerisation domain JHS83_03440 PF02590 Predicted SPOUT methyltransferase JHS83_03450 PF14840 Processivity clamp loader gamma complex DNA pol III C-term JHS83_03450 PF06144 DNA polymerase III, delta subunit JHS83_03455 PF04390 Lipopolysaccharide-assembly JHS83_03460 PF08264 Anticodon-binding domain of tRNA JHS83_03460 PF00133 tRNA synthetases class I (I, L, M and V) JHS83_03460 PF13603 Leucyl-tRNA synthetase, Domain 2 JHS83_03465 PF07295 Zinc-ribbon containing domain JHS83_03470 PF00795 Carbon-nitrogen hydrolase JHS83_03475 PF00571 CBS domain JHS83_03475 PF03471 Transporter associated domain JHS83_03480 PF02130 Uncharacterized protein family UPF0054 JHS83_03485 PF02562 PhoH-like protein JHS83_03490 PF04055 Radical SAM superfamily JHS83_03490 PF00919 Uncharacterized protein family UPF0004 JHS83_03490 PF01938 TRAM domain JHS83_03495 PF01494 FAD binding domain JHS83_03610 PF06071 Protein of unknown function (DUF933) JHS83_03610 PF01926 50S ribosome-binding GTPase JHS83_03615 PF01195 Peptidyl-tRNA hydrolase JHS83_03620 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JHS83_03620 PF14572 Phosphoribosyl synthetase-associated domain JHS83_03625 PF00288 GHMP kinases N terminal domain JHS83_03625 PF08544 GHMP kinases C terminal JHS83_03630 PF03550 Outer membrane lipoprotein LolB JHS83_03635 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain JHS83_03635 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain JHS83_03635 PF01488 Shikimate / quinate 5-dehydrogenase JHS83_03640 PF03462 PCRF domain JHS83_03640 PF00472 RF-1 domain JHS83_03645 PF13847 Methyltransferase domain JHS83_03645 PF17827 PrmC N-terminal domain JHS83_03650 PF04247 Invasion gene expression up-regulator, SirB JHS83_03655 PF13369 Transglutaminase-like superfamily JHS83_03660 PF00793 DAHP synthetase I family JHS83_03665 PF00149 Calcineurin-like phosphoesterase JHS83_03665 PF02872 5'-nucleotidase, C-terminal domain JHS83_03670 PF04073 Aminoacyl-tRNA editing domain JHS83_03675 PF00849 RNA pseudouridylate synthase JHS83_03675 PF01479 S4 domain JHS83_03680 PF01713 Smr domain JHS83_03700 PF03173 Putative carbohydrate binding domain JHS83_03700 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain JHS83_03700 PF00728 Glycosyl hydrolase family 20, catalytic domain JHS83_03700 PF02838 Glycosyl hydrolase family 20, domain 2 JHS83_03715 PF00403 Heavy-metal-associated domain JHS83_03720 PF13609 Gram-negative porin JHS83_03725 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) JHS83_03730 PF00749 tRNA synthetases class I (E and Q), catalytic domain JHS83_03735 PF00691 OmpA family JHS83_03735 PF01389 OmpA-like transmembrane domain JHS83_03780 PF00072 Response regulator receiver domain JHS83_03780 PF01584 CheW-like domain JHS83_03785 PF01739 CheR methyltransferase, SAM binding domain JHS83_03785 PF03705 CheR methyltransferase, all-alpha domain JHS83_03790 PF00460 Flagella basal body rod protein JHS83_03795 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JHS83_03795 PF00460 Flagella basal body rod protein JHS83_03800 PF13861 FlgD Tudor-like domain JHS83_03800 PF13860 FlgD Ig-like domain JHS83_03800 PF03963 Flagellar hook capping protein - N-terminal region JHS83_03805 PF00460 Flagella basal body rod protein JHS83_03805 PF07559 Flagellar basal body protein FlaE JHS83_03805 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JHS83_03810 PF00460 Flagella basal body rod protein JHS83_03810 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JHS83_03815 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JHS83_03815 PF00460 Flagella basal body rod protein JHS83_03820 PF02107 Flagellar L-ring protein JHS83_03825 PF02119 Flagellar P-ring protein JHS83_03830 PF10135 Rod binding protein JHS83_03830 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JHS83_03835 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JHS83_03835 PF07196 Flagellin hook IN motif JHS83_03840 PF00669 Bacterial flagellin N-terminal helical region JHS83_03845 PF00700 Bacterial flagellin C-terminal helical region JHS83_03845 PF00669 Bacterial flagellin N-terminal helical region JHS83_03845 PF07196 Flagellin hook IN motif JHS83_03850 PF00700 Bacterial flagellin C-terminal helical region JHS83_03850 PF00669 Bacterial flagellin N-terminal helical region JHS83_03850 PF07196 Flagellin hook IN motif JHS83_03855 PF00669 Bacterial flagellin N-terminal helical region JHS83_03855 PF07196 Flagellin hook IN motif JHS83_03855 PF00700 Bacterial flagellin C-terminal helical region JHS83_03860 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JHS83_03865 PF02896 PEP-utilising enzyme, TIM barrel domain JHS83_03865 PF05524 PEP-utilising enzyme, N-terminal JHS83_03865 PF00391 PEP-utilising enzyme, mobile domain JHS83_03870 PF00381 PTS HPr component phosphorylation site JHS83_03875 PF00291 Pyridoxal-phosphate dependent enzyme JHS83_03885 PF04354 ZipA, C-terminal FtsZ-binding domain JHS83_03890 PF00533 BRCA1 C Terminus (BRCT) domain JHS83_03890 PF12826 Helix-hairpin-helix motif JHS83_03890 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JHS83_03890 PF03120 NAD-dependent DNA ligase OB-fold domain JHS83_03890 PF01653 NAD-dependent DNA ligase adenylation domain JHS83_03895 PF03573 outer membrane porin, OprD family JHS83_03910 PF16200 C-terminal region of band_7 JHS83_03910 PF01145 SPFH domain / Band 7 family JHS83_03915 PF00085 Thioredoxin JHS83_03920 PF00106 short chain dehydrogenase JHS83_03925 PF08338 Domain of unknown function (DUF1731) JHS83_03925 PF01370 NAD dependent epimerase/dehydratase family JHS83_03930 PF07556 Protein of unknown function (DUF1538) JHS83_03935 PF07556 Protein of unknown function (DUF1538) JHS83_03950 PF12850 Calcineurin-like phosphoesterase superfamily domain JHS83_03965 PF17323 Trans-membrane regulatory protein ToxS JHS83_03970 PF00486 Transcriptional regulatory protein, C terminal JHS83_03975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_03975 PF00183 Hsp90 protein JHS83_03980 PF05191 Adenylate kinase, active site lid JHS83_03985 PF00762 Ferrochelatase JHS83_03990 PF00854 POT family JHS83_03995 PF02357 Transcription termination factor nusG JHS83_04000 PF00733 Asparagine synthase JHS83_04000 PF13537 Glutamine amidotransferase domain JHS83_04005 PF00999 Sodium/hydrogen exchanger family JHS83_04005 PF02254 TrkA-N domain JHS83_04010 PF01047 MarR family JHS83_04010 PF00480 ROK family JHS83_04015 PF01979 Amidohydrolase family JHS83_04020 PF02378 Phosphotransferase system, EIIC JHS83_04020 PF00367 phosphotransferase system, EIIB JHS83_04025 PF00749 tRNA synthetases class I (E and Q), catalytic domain JHS83_04025 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain JHS83_04030 PF01475 Ferric uptake regulator family JHS83_04040 PF00258 Flavodoxin JHS83_04050 PF12697 Alpha/beta hydrolase family JHS83_04055 PF03925 SeqA protein C-terminal domain JHS83_04055 PF17206 SeqA protein N-terminal domain JHS83_04060 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JHS83_04060 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JHS83_04060 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JHS83_04060 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JHS83_04070 PF01784 NIF3 (NGG1p interacting factor 3) JHS83_04075 PF00285 Citrate synthase, C-terminal domain JHS83_04080 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JHS83_04085 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JHS83_04090 PF00890 FAD binding domain JHS83_04090 PF02910 Fumarate reductase flavoprotein C-term JHS83_04095 PF13085 2Fe-2S iron-sulfur cluster binding domain JHS83_04100 PF16078 2-oxoglutarate dehydrogenase N-terminus JHS83_04100 PF00676 Dehydrogenase E1 component JHS83_04100 PF16870 2-oxoglutarate dehydrogenase C-terminal JHS83_04100 PF02779 Transketolase, pyrimidine binding domain JHS83_04105 PF00364 Biotin-requiring enzyme JHS83_04105 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JHS83_04105 PF02817 e3 binding domain JHS83_04110 PF00549 CoA-ligase JHS83_04110 PF08442 ATP-grasp domain JHS83_04115 PF02629 CoA binding domain JHS83_04115 PF00549 CoA-ligase JHS83_04120 PF00950 ABC 3 transport family JHS83_04125 PF00005 ABC transporter JHS83_04130 PF01297 Zinc-uptake complex component A periplasmic JHS83_04135 PF02311 AraC-like ligand binding domain JHS83_04135 PF12833 Helix-turn-helix domain JHS83_04140 PF04023 FeoA domain JHS83_04145 PF07670 Nucleoside recognition JHS83_04145 PF17910 FeoB cytosolic helical domain JHS83_04145 PF02421 Ferrous iron transport protein B JHS83_04145 PF07664 Ferrous iron transport protein B C terminus JHS83_04160 PF03485 Arginyl tRNA synthetase N terminal domain JHS83_04160 PF00750 tRNA synthetases class I (R) JHS83_04160 PF05746 DALR anticodon binding domain JHS83_04165 PF06185 YecM protein JHS83_04170 PF01842 ACT domain JHS83_04170 PF00551 Formyl transferase JHS83_04175 PF13307 Helicase C-terminal domain JHS83_04175 PF04851 Type III restriction enzyme, res subunit JHS83_04180 PF00814 Glycoprotease family JHS83_04195 PF00561 alpha/beta hydrolase fold JHS83_04200 PF00501 AMP-binding enzyme JHS83_04200 PF13193 AMP-binding enzyme C-terminal domain JHS83_04205 PF01612 3'-5' exonuclease JHS83_04205 PF00570 HRDC domain JHS83_04210 PF03776 Septum formation topological specificity factor MinE JHS83_04215 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JHS83_04220 PF03775 Septum formation inhibitor MinC, C-terminal domain JHS83_04220 PF05209 Septum formation inhibitor MinC, N-terminal domain JHS83_04225 PF05166 YcgL domain JHS83_04230 PF13406 Transglycosylase SLT domain JHS83_04235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_04235 PF03466 LysR substrate binding domain JHS83_04240 PF07670 Nucleoside recognition JHS83_04240 PF07662 Na+ dependent nucleoside transporter C-terminus JHS83_04240 PF01773 Na+ dependent nucleoside transporter N-terminus JHS83_04245 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JHS83_04245 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JHS83_04260 PF00109 Beta-ketoacyl synthase, N-terminal domain JHS83_04260 PF02801 Beta-ketoacyl synthase, C-terminal domain JHS83_04270 PF07977 FabA-like domain JHS83_04275 PF00109 Beta-ketoacyl synthase, N-terminal domain JHS83_04275 PF02801 Beta-ketoacyl synthase, C-terminal domain JHS83_04300 PF00221 Aromatic amino acid lyase JHS83_04305 PF00535 Glycosyl transferase family 2 JHS83_04310 PF07977 FabA-like domain JHS83_04325 PF00550 Phosphopantetheine attachment site JHS83_04330 PF00550 Phosphopantetheine attachment site JHS83_04355 PF04820 Tryptophan halogenase JHS83_04365 PF00571 CBS domain JHS83_04365 PF03471 Transporter associated domain JHS83_04365 PF01595 Cyclin M transmembrane N-terminal domain JHS83_04370 PF00271 Helicase conserved C-terminal domain JHS83_04370 PF00270 DEAD/DEAH box helicase JHS83_04375 PF02080 TrkA-C domain JHS83_04375 PF02254 TrkA-N domain JHS83_04380 PF02386 Cation transport protein JHS83_04395 PF02696 Uncharacterized ACR, YdiU/UPF0061 family JHS83_04400 PF03480 Bacterial extracellular solute-binding protein, family 7 JHS83_04405 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component JHS83_04410 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JHS83_04420 PF02954 Bacterial regulatory protein, Fis family JHS83_04420 PF00072 Response regulator receiver domain JHS83_04420 PF00158 Sigma-54 interaction domain JHS83_04425 PF02743 Cache domain JHS83_04425 PF00512 His Kinase A (phospho-acceptor) domain JHS83_04425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_04435 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JHS83_04435 PF05698 Bacterial trigger factor protein (TF) C-terminus JHS83_04435 PF05697 Bacterial trigger factor protein (TF) JHS83_04440 PF00574 Clp protease JHS83_04445 PF07724 AAA domain (Cdc48 subfamily) JHS83_04445 PF10431 C-terminal, D2-small domain, of ClpB protein JHS83_04445 PF06689 ClpX C4-type zinc finger JHS83_04450 PF00004 ATPase family associated with various cellular activities (AAA) JHS83_04450 PF05362 Lon protease (S16) C-terminal proteolytic domain JHS83_04450 PF02190 ATP-dependent protease La (LON) substrate-binding domain JHS83_04455 PF00216 Bacterial DNA-binding protein JHS83_04460 PF13145 PPIC-type PPIASE domain JHS83_04480 PF01966 HD domain JHS83_04480 PF13286 Phosphohydrolase-associated domain JHS83_04490 PF00155 Aminotransferase class I and II JHS83_04495 PF00425 chorismate binding enzyme JHS83_04500 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JHS83_04500 PF16582 Middle domain of thiamine pyrophosphate JHS83_04500 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JHS83_04505 PF12697 Alpha/beta hydrolase family JHS83_04510 PF00378 Enoyl-CoA hydratase/isomerase JHS83_04515 PF13378 Enolase C-terminal domain-like JHS83_04520 PF00501 AMP-binding enzyme JHS83_04520 PF13193 AMP-binding enzyme C-terminal domain JHS83_04530 PF03601 Conserved hypothetical protein 698 JHS83_04535 PF07690 Major Facilitator Superfamily JHS83_04580 PF13533 Biotin-lipoyl like JHS83_04585 PF00873 AcrB/AcrD/AcrF family JHS83_04605 PF00291 Pyridoxal-phosphate dependent enzyme JHS83_04610 PF01037 Lrp/AsnC ligand binding domain JHS83_04610 PF13404 AsnC-type helix-turn-helix domain JHS83_04625 PF09619 Type III secretion system lipoprotein chaperone (YscW) JHS83_04630 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JHS83_04640 PF17152 Periplasmic sensor domain JHS83_04640 PF00990 Diguanylate cyclase, GGDEF domain JHS83_04650 PF00588 SpoU rRNA Methylase family JHS83_04650 PF08032 RNA 2'-O ribose methyltransferase substrate binding JHS83_04655 PF00037 4Fe-4S binding domain JHS83_04655 PF11953 Domain of unknown function (DUF3470) JHS83_04665 PF00478 IMP dehydrogenase / GMP reductase domain JHS83_04665 PF00571 CBS domain JHS83_04670 PF00403 Heavy-metal-associated domain JHS83_04675 PF01048 Phosphorylase superfamily JHS83_04685 PF00672 HAMP domain JHS83_04685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS83_04690 PF01230 HIT domain JHS83_04705 PF08139 Prokaryotic membrane lipoprotein lipid attachment site JHS83_04705 PF13036 Peptidoglycan-synthase activator LpoB JHS83_04715 PF05728 Uncharacterised protein family (UPF0227) JHS83_04720 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS83_04735 PF17757 UvrB interaction domain JHS83_04735 PF00270 DEAD/DEAH box helicase JHS83_04735 PF00271 Helicase conserved C-terminal domain JHS83_04735 PF03461 TRCF domain JHS83_04735 PF02559 CarD-like/TRCF domain JHS83_04745 PF12704 MacB-like periplasmic core domain JHS83_04745 PF02687 FtsX-like permease family JHS83_04750 PF00005 ABC transporter JHS83_04755 PF12704 MacB-like periplasmic core domain JHS83_04755 PF02687 FtsX-like permease family JHS83_04765 PF13567 Domain of unknown function (DUF4131) JHS83_04765 PF03772 Competence protein JHS83_04765 PF00753 Metallo-beta-lactamase superfamily JHS83_04770 PF00664 ABC transporter transmembrane region JHS83_04770 PF00005 ABC transporter JHS83_04775 PF02606 Tetraacyldisaccharide-1-P 4'-kinase JHS83_04780 PF03966 Trm112p-like protein JHS83_04785 PF02348 Cytidylyltransferase JHS83_04790 PF04293 SpoVR like protein JHS83_04795 PF04285 Protein of unknown function (DUF444) JHS83_04800 PF08298 PrkA AAA domain JHS83_04800 PF06798 PrkA serine protein kinase C-terminal domain JHS83_04805 PF03887 YfbU domain JHS83_04815 PF04055 Radical SAM superfamily JHS83_04825 PF01228 Glycine radical JHS83_04825 PF02901 Pyruvate formate lyase-like JHS83_04840 PF00005 ABC transporter JHS83_04845 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS83_04850 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_04855 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_04865 PF03372 Endonuclease/Exonuclease/phosphatase family JHS83_04870 PF10689 Protein of unknown function (DUF2496) JHS83_04875 PF07445 Primosomal replication protein priC JHS83_04880 PF01925 Sulfite exporter TauE/SafE JHS83_04885 PF06733 DEAD_2 JHS83_04885 PF13307 Helicase C-terminal domain JHS83_04895 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) JHS83_04900 PF00849 RNA pseudouridylate synthase JHS83_04905 PF03971 Monomeric isocitrate dehydrogenase JHS83_04910 PF00313 'Cold-shock' DNA-binding domain JHS83_04915 PF02617 ATP-dependent Clp protease adaptor protein ClpS JHS83_04920 PF07724 AAA domain (Cdc48 subfamily) JHS83_04920 PF00004 ATPase family associated with various cellular activities (AAA) JHS83_04920 PF10431 C-terminal, D2-small domain, of ClpB protein JHS83_04920 PF17871 AAA lid domain JHS83_04920 PF02861 Clp amino terminal domain, pathogenicity island component JHS83_04930 PF01176 Translation initiation factor 1A / IF-1 JHS83_04935 PF04376 Arginine-tRNA-protein transferase, N terminus JHS83_04935 PF04377 Arginine-tRNA-protein transferase, C terminus JHS83_04940 PF03588 Leucyl/phenylalanyl-tRNA protein transferase JHS83_04950 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JHS83_04955 PF10692 Protein of unknown function (DUF2498) JHS83_04960 PF01396 Topoisomerase DNA binding C4 zinc finger JHS83_04960 PF08272 Topoisomerase I zinc-ribbon-like JHS83_04960 PF01751 Toprim domain JHS83_04960 PF01131 DNA topoisomerase JHS83_04965 PF00483 Nucleotidyl transferase JHS83_04970 PF00534 Glycosyl transferases group 1 JHS83_04970 PF08323 Starch synthase catalytic domain JHS83_04990 PF04994 TfoX C-terminal domain JHS83_04990 PF04993 TfoX N-terminal domain JHS83_04995 PF00356 Bacterial regulatory proteins, lacI family JHS83_05000 PF02613 Nitrate reductase delta subunit JHS83_05005 PF00486 Transcriptional regulatory protein, C terminal JHS83_05005 PF00072 Response regulator receiver domain JHS83_05010 PF02698 DUF218 domain JHS83_05015 PF13847 Methyltransferase domain JHS83_05020 PF17192 MukF middle domain JHS83_05020 PF17193 MukF C-terminal domain JHS83_05020 PF03882 MukF winged-helix domain JHS83_05025 PF04288 MukE-like family JHS83_05030 PF04310 MukB N-terminal JHS83_05030 PF16330 MukB hinge domain JHS83_05040 PF18030 RimK PreATP-grasp domain JHS83_05040 PF08443 RimK-like ATP-grasp domain JHS83_05050 PF18030 RimK PreATP-grasp domain JHS83_05050 PF08443 RimK-like ATP-grasp domain JHS83_05055 PF08003 Protein of unknown function (DUF1698) JHS83_05060 PF13649 Methyltransferase domain JHS83_05065 PF01904 Protein of unknown function DUF72 JHS83_05070 PF01336 OB-fold nucleic acid binding domain JHS83_05070 PF00152 tRNA synthetases class II (D, K and N) JHS83_05070 PF02938 GAD domain JHS83_05075 PF02075 Crossover junction endodeoxyribonuclease RuvC JHS83_05080 PF02203 Tar ligand binding domain homologue JHS83_05080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS83_05080 PF00672 HAMP domain JHS83_05085 PF01330 RuvA N terminal domain JHS83_05085 PF07499 RuvA, C-terminal domain JHS83_05090 PF05496 Holliday junction DNA helicase RuvB P-loop domain JHS83_05090 PF17864 RuvB AAA lid domain JHS83_05090 PF05491 RuvB C-terminal winged helix domain JHS83_05095 PF01654 Cytochrome bd terminal oxidase subunit I JHS83_05100 PF02322 Cytochrome bd terminal oxidase subunit II JHS83_05105 PF08173 Membrane bound YbgT-like protein JHS83_05115 PF03061 Thioesterase superfamily JHS83_05120 PF01618 MotA/TolQ/ExbB proton channel family JHS83_05125 PF02472 Biopolymer transport protein ExbD/TolR JHS83_05135 PF04052 TolB amino-terminal domain JHS83_05135 PF07676 WD40-like Beta Propeller Repeat JHS83_05140 PF00691 OmpA family JHS83_05145 PF16331 TolA binding protein trimerisation JHS83_05145 PF13174 Tetratricopeptide repeat JHS83_05150 PF02445 Quinolinate synthetase A protein JHS83_05160 PF03994 Domain of Unknown Function (DUF350) JHS83_05170 PF03738 Glutathionylspermidine synthase preATP-grasp JHS83_05180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_05180 PF00512 His Kinase A (phospho-acceptor) domain JHS83_05180 PF09308 LuxQ, periplasmic JHS83_05180 PF00072 Response regulator receiver domain JHS83_05185 PF06610 L-alanine exporter JHS83_05210 PF02151 UvrB/uvrC motif JHS83_05210 PF12344 Ultra-violet resistance protein B JHS83_05210 PF17757 UvrB interaction domain JHS83_05210 PF00271 Helicase conserved C-terminal domain JHS83_05210 PF04851 Type III restriction enzyme, res subunit JHS83_05270 PF02796 Helix-turn-helix domain of resolvase JHS83_05270 PF00239 Resolvase, N terminal domain JHS83_05280 PF12729 Four helix bundle sensory module for signal transduction JHS83_05280 PF00672 HAMP domain JHS83_05280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS83_05285 PF00529 HlyD membrane-fusion protein of T1SS JHS83_05285 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS83_05290 PF00873 AcrB/AcrD/AcrF family JHS83_05305 PF00579 tRNA synthetases class I (W and Y) JHS83_05315 PF03372 Endonuclease/Exonuclease/phosphatase family JHS83_05320 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) JHS83_05330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_05330 PF03466 LysR substrate binding domain JHS83_05340 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JHS83_05340 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JHS83_05345 PF01037 Lrp/AsnC ligand binding domain JHS83_05350 PF13491 4TM region of DNA translocase FtsK/SpoIIIE JHS83_05350 PF17854 FtsK alpha domain JHS83_05350 PF09397 Ftsk gamma domain JHS83_05350 PF01580 FtsK/SpoIIIE family JHS83_05355 PF03548 Outer membrane lipoprotein carrier protein LolA JHS83_05360 PF12002 MgsA AAA+ ATPase C terminal JHS83_05360 PF00004 ATPase family associated with various cellular activities (AAA) JHS83_05360 PF16193 AAA C-terminal domain JHS83_05365 PF02403 Seryl-tRNA synthetase N-terminal domain JHS83_05365 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JHS83_05375 PF01258 Prokaryotic dksA/traR C4-type zinc finger JHS83_05380 PF00202 Aminotransferase class-III JHS83_05385 PF04055 Radical SAM superfamily JHS83_05385 PF06968 Biotin and Thiamin Synthesis associated domain JHS83_05390 PF00155 Aminotransferase class I and II JHS83_05395 PF08241 Methyltransferase domain JHS83_05410 PF01435 Peptidase family M48 JHS83_05420 PF00106 short chain dehydrogenase JHS83_05455 PF08328 Adenylosuccinate lyase C-terminal JHS83_05455 PF00206 Lyase JHS83_05460 PF04356 Protein of unknown function (DUF489) JHS83_05475 PF00294 pfkB family carbohydrate kinase JHS83_05480 PF00816 H-NS histone family JHS83_05485 PF03553 Na+/H+ antiporter family JHS83_05495 PF00158 Sigma-54 interaction domain JHS83_05495 PF00072 Response regulator receiver domain JHS83_05495 PF02954 Bacterial regulatory protein, Fis family JHS83_05500 PF08029 HisG, C-terminal domain JHS83_05500 PF01634 ATP phosphoribosyltransferase JHS83_05505 PF00815 Histidinol dehydrogenase JHS83_05510 PF00155 Aminotransferase class I and II JHS83_05515 PF00475 Imidazoleglycerol-phosphate dehydratase JHS83_05515 PF08645 Polynucleotide kinase 3 phosphatase JHS83_05520 PF00117 Glutamine amidotransferase class-I JHS83_05525 PF00977 Histidine biosynthesis protein JHS83_05530 PF00977 Histidine biosynthesis protein JHS83_05535 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase JHS83_05535 PF01502 Phosphoribosyl-AMP cyclohydrolase JHS83_05540 PF02810 SEC-C motif JHS83_05545 PF08668 HDOD domain JHS83_05545 PF00563 EAL domain JHS83_05550 PF00149 Calcineurin-like phosphoesterase JHS83_05555 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JHS83_05560 PF09190 DALR domain JHS83_05560 PF01406 tRNA synthetases class I (C) catalytic domain JHS83_05565 PF00265 Thymidine kinase JHS83_05570 PF02698 DUF218 domain JHS83_05595 PF01226 Formate/nitrite transporter JHS83_05605 PF03649 Uncharacterised protein family (UPF0014) JHS83_05610 PF06796 Periplasmic nitrate reductase protein NapE JHS83_05615 PF03264 NapC/NirT cytochrome c family, N-terminal region JHS83_05620 PF01568 Molydopterin dinucleotide binding domain JHS83_05620 PF18364 Molybdopterin oxidoreductase N-terminal domain JHS83_05620 PF00384 Molybdopterin oxidoreductase JHS83_05625 PF16875 Glycosyl hydrolase family 36 N-terminal domain JHS83_05625 PF16874 Glycosyl hydrolase family 36 C-terminal domain JHS83_05635 PF01368 DHH family JHS83_05635 PF02833 DHHA2 domain JHS83_05645 PF00005 ABC transporter JHS83_05650 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS83_05650 PF00005 ABC transporter JHS83_05655 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_05655 PF12911 N-terminal TM domain of oligopeptide transport permease C JHS83_05660 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_05665 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JHS83_05670 PF00158 Sigma-54 interaction domain JHS83_05670 PF02954 Bacterial regulatory protein, Fis family JHS83_05675 PF04012 PspA/IM30 family JHS83_05680 PF06667 Phage shock protein B JHS83_05685 PF04024 PspC domain JHS83_05690 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS83_05695 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS83_05700 PF00873 AcrB/AcrD/AcrF family JHS83_05705 PF03352 Methyladenine glycosylase JHS83_05710 PF03280 Proteobacterial lipase chaperone protein JHS83_05715 PF00561 alpha/beta hydrolase fold JHS83_05720 PF01053 Cys/Met metabolism PLP-dependent enzyme JHS83_05725 PF13091 PLD-like domain JHS83_05725 PF13396 Phospholipase_D-nuclease N-terminal JHS83_05730 PF00209 Sodium:neurotransmitter symporter family JHS83_05735 PF00672 HAMP domain JHS83_05735 PF12729 Four helix bundle sensory module for signal transduction JHS83_05735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS83_05740 PF00849 RNA pseudouridylate synthase JHS83_05750 PF00175 Oxidoreductase NAD-binding domain JHS83_05750 PF00111 2Fe-2S iron-sulfur cluster binding domain JHS83_05750 PF00970 Oxidoreductase FAD-binding domain JHS83_05755 PF03063 Prismane/CO dehydrogenase family JHS83_05760 PF00158 Sigma-54 interaction domain JHS83_05760 PF01590 GAF domain JHS83_05770 PF01066 CDP-alcohol phosphatidyltransferase JHS83_05775 PF00005 ABC transporter JHS83_05780 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_05785 PF13416 Bacterial extracellular solute-binding protein JHS83_05790 PF09335 SNARE associated Golgi protein JHS83_05800 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS83_05800 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JHS83_05810 PF00512 His Kinase A (phospho-acceptor) domain JHS83_05810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_05815 PF00072 Response regulator receiver domain JHS83_05815 PF00196 Bacterial regulatory proteins, luxR family JHS83_05825 PF06945 Protein of unknown function (DUF1289) JHS83_05835 PF00149 Calcineurin-like phosphoesterase JHS83_05835 PF02872 5'-nucleotidase, C-terminal domain JHS83_05850 PF01386 Ribosomal L25p family JHS83_05855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_05860 PF00072 Response regulator receiver domain JHS83_05860 PF00486 Transcriptional regulatory protein, C terminal JHS83_05870 PF00271 Helicase conserved C-terminal domain JHS83_05870 PF04851 Type III restriction enzyme, res subunit JHS83_05875 PF01479 S4 domain JHS83_05875 PF00849 RNA pseudouridylate synthase JHS83_05880 PF07690 Major Facilitator Superfamily JHS83_05895 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) JHS83_05905 PF13737 Transposase DDE domain JHS83_05915 PF03264 NapC/NirT cytochrome c family, N-terminal region JHS83_05925 PF01554 MatE JHS83_05930 PF00005 ABC transporter JHS83_05945 PF06965 Na+/H+ antiporter 1 JHS83_05950 PF00440 Bacterial regulatory proteins, tetR family JHS83_05950 PF16295 Tetracyclin repressor-like, C-terminal domain JHS83_05955 PF09317 Domain of unknown function (DUF1974) JHS83_05955 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JHS83_05955 PF02770 Acyl-CoA dehydrogenase, middle domain JHS83_05955 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JHS83_05960 PF12241 Trans-2-enoyl-CoA reductase catalytic region JHS83_05960 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase JHS83_05960 PF07055 Enoyl reductase FAD binding domain JHS83_05965 PF06826 Predicted Permease Membrane Region JHS83_05965 PF02080 TrkA-C domain JHS83_05970 PF00462 Glutaredoxin JHS83_05975 PF00465 Iron-containing alcohol dehydrogenase JHS83_05980 PF01418 Helix-turn-helix domain, rpiR family JHS83_05980 PF01380 SIS domain JHS83_05985 PF00282 Pyridoxal-dependent decarboxylase conserved domain JHS83_05995 PF03956 Lysine exporter LysO JHS83_06005 PF04994 TfoX C-terminal domain JHS83_06005 PF04993 TfoX N-terminal domain JHS83_06020 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS83_06020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_06020 PF00512 His Kinase A (phospho-acceptor) domain JHS83_06030 PF00266 Aminotransferase class-V JHS83_06035 PF00291 Pyridoxal-phosphate dependent enzyme JHS83_06040 PF00005 ABC transporter JHS83_06040 PF00664 ABC transporter transmembrane region JHS83_06045 PF00664 ABC transporter transmembrane region JHS83_06045 PF00005 ABC transporter JHS83_06050 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS83_06060 PF00266 Aminotransferase class-V JHS83_06070 PF00072 Response regulator receiver domain JHS83_06070 PF00990 Diguanylate cyclase, GGDEF domain JHS83_06075 PF00939 Sodium:sulfate symporter transmembrane region JHS83_06080 PF02698 DUF218 domain JHS83_06085 PF03949 Malic enzyme, NAD binding domain JHS83_06085 PF00390 Malic enzyme, N-terminal domain JHS83_06090 PF04408 Helicase associated domain (HA2) JHS83_06090 PF00270 DEAD/DEAH box helicase JHS83_06090 PF00271 Helicase conserved C-terminal domain JHS83_06090 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold JHS83_06095 PF02253 Phospholipase A1 JHS83_06105 PF09423 PhoD-like phosphatase JHS83_06105 PF16655 PhoD-like phosphatase, N-terminal domain JHS83_06110 PF01259 SAICAR synthetase JHS83_06130 PF00691 OmpA family JHS83_06130 PF05736 OprF membrane domain JHS83_06145 PF02913 FAD linked oxidases, C-terminal domain JHS83_06145 PF01565 FAD binding domain JHS83_06145 PF13183 4Fe-4S dicluster domain JHS83_06150 PF04191 Phospholipid methyltransferase JHS83_06160 PF00221 Aromatic amino acid lyase JHS83_06165 PF17391 Urocanase N-terminal domain JHS83_06165 PF01175 Urocanase Rossmann-like domain JHS83_06165 PF17392 Urocanase C-terminal domain JHS83_06170 PF00491 Arginase family JHS83_06175 PF01979 Amidohydrolase family JHS83_06180 PF00392 Bacterial regulatory proteins, gntR family JHS83_06180 PF07702 UTRA domain JHS83_06195 PF03129 Anticodon binding domain JHS83_06195 PF02824 TGS domain JHS83_06195 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JHS83_06195 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JHS83_06200 PF05198 Translation initiation factor IF-3, N-terminal domain JHS83_06200 PF00707 Translation initiation factor IF-3, C-terminal domain JHS83_06205 PF01632 Ribosomal protein L35 JHS83_06210 PF00453 Ribosomal protein L20 JHS83_06215 PF01906 Putative heavy-metal-binding JHS83_06245 PF00990 Diguanylate cyclase, GGDEF domain JHS83_06245 PF17158 Membrane-associated sensor, integral membrane domain JHS83_06250 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JHS83_06250 PF01409 tRNA synthetases class II core domain (F) JHS83_06255 PF03484 tRNA synthetase B5 domain JHS83_06255 PF03147 Ferredoxin-fold anticodon binding domain JHS83_06255 PF01588 Putative tRNA binding domain JHS83_06255 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JHS83_06255 PF03483 B3/4 domain JHS83_06265 PF00216 Bacterial DNA-binding protein JHS83_06275 PF05724 Thiopurine S-methyltransferase (TPMT) JHS83_06280 PF02222 ATP-grasp domain JHS83_06285 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JHS83_06285 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region JHS83_06290 PF04172 LrgB-like family JHS83_06295 PF03788 LrgA family JHS83_06300 PF08411 Exonuclease C-terminal JHS83_06300 PF00929 Exonuclease JHS83_06305 PF00375 Sodium:dicarboxylate symporter family JHS83_06310 PF13460 NAD(P)H-binding JHS83_06315 PF02277 Phosphoribosyltransferase JHS83_06320 PF02654 Cobalamin-5-phosphate synthase JHS83_06325 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase JHS83_06330 PF00300 Histidine phosphatase superfamily (branch 1) JHS83_06340 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family JHS83_06345 PF01032 FecCD transport family JHS83_06350 PF00005 ABC transporter JHS83_06370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_06370 PF03466 LysR substrate binding domain JHS83_06380 PF01863 Protein of unknown function DUF45 JHS83_06385 PF05971 RNA methyltransferase JHS83_06405 PF00392 Bacterial regulatory proteins, gntR family JHS83_06410 PF00171 Aldehyde dehydrogenase family JHS83_06415 PF05544 Proline racemase JHS83_06430 PF02423 Ornithine cyclodeaminase/mu-crystallin family JHS83_06435 PF00701 Dihydrodipicolinate synthetase family JHS83_06440 PF00005 ABC transporter JHS83_06440 PF08402 TOBE domain JHS83_06445 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_06450 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_06460 PF01752 Collagenase JHS83_06460 PF08453 Peptidase family M9 N-terminal JHS83_06470 PF00005 ABC transporter JHS83_06470 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS83_06475 PF00005 ABC transporter JHS83_06475 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS83_06480 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_06480 PF12911 N-terminal TM domain of oligopeptide transport permease C JHS83_06485 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_06490 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JHS83_06495 PF07687 Peptidase dimerisation domain JHS83_06495 PF01546 Peptidase family M20/M25/M40 JHS83_06500 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JHS83_06505 PF04209 homogentisate 1,2-dioxygenase JHS83_06515 PF14497 Glutathione S-transferase, C-terminal domain JHS83_06515 PF02798 Glutathione S-transferase, N-terminal domain JHS83_06555 PF02405 Permease MlaE JHS83_06560 PF00005 ABC transporter JHS83_06575 PF00924 Mechanosensitive ion channel JHS83_06575 PF12795 Mechanosensitive ion channel porin domain JHS83_06575 PF12794 Mechanosensitive ion channel inner membrane domain 1 JHS83_06590 PF13533 Biotin-lipoyl like JHS83_06605 PF13520 Amino acid permease JHS83_06615 PF13520 Amino acid permease JHS83_06625 PF13737 Transposase DDE domain JHS83_06635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_06635 PF03466 LysR substrate binding domain JHS83_06640 PF07687 Peptidase dimerisation domain JHS83_06640 PF01546 Peptidase family M20/M25/M40 JHS83_06660 PF00300 Histidine phosphatase superfamily (branch 1) JHS83_06675 PF00939 Sodium:sulfate symporter transmembrane region JHS83_06680 PF00512 His Kinase A (phospho-acceptor) domain JHS83_06680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_06680 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS83_06685 PF02954 Bacterial regulatory protein, Fis family JHS83_06685 PF00072 Response regulator receiver domain JHS83_06685 PF00158 Sigma-54 interaction domain JHS83_06690 PF03707 Bacterial signalling protein N terminal repeat JHS83_06690 PF00990 Diguanylate cyclase, GGDEF domain JHS83_06690 PF00563 EAL domain JHS83_06695 PF11871 Domain of unknown function (DUF3391) JHS83_06695 PF01966 HD domain JHS83_06700 PF01810 LysE type translocator JHS83_06705 PF11230 Protein of unknown function (DUF3029) JHS83_06710 PF04055 Radical SAM superfamily JHS83_06720 PF03741 Integral membrane protein TerC family JHS83_06725 PF01551 Peptidase family M23 JHS83_06725 PF08525 Opacity-associated protein A N-terminal motif JHS83_06725 PF01476 LysM domain JHS83_06750 PF02954 Bacterial regulatory protein, Fis family JHS83_06750 PF00158 Sigma-54 interaction domain JHS83_06755 PF10431 C-terminal, D2-small domain, of ClpB protein JHS83_06755 PF07724 AAA domain (Cdc48 subfamily) JHS83_06755 PF00004 ATPase family associated with various cellular activities (AAA) JHS83_06755 PF17871 AAA lid domain JHS83_06760 PF05638 Type VI secretion system effector, Hcp JHS83_06765 PF04717 Type VI secretion system, phage-baseplate injector JHS83_06790 PF00069 Protein kinase domain JHS83_06805 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath JHS83_06815 PF05947 Type VI secretion system, TssF JHS83_06825 PF01037 Lrp/AsnC ligand binding domain JHS83_06855 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE JHS83_06910 PF01966 HD domain JHS83_06915 PF00465 Iron-containing alcohol dehydrogenase JHS83_06920 PF03222 Tryptophan/tyrosine permease family JHS83_06940 PF00664 ABC transporter transmembrane region JHS83_06940 PF00005 ABC transporter JHS83_06945 PF00664 ABC transporter transmembrane region JHS83_06945 PF00005 ABC transporter JHS83_06970 PF00012 Hsp70 protein JHS83_06975 PF00012 Hsp70 protein JHS83_06985 PF00990 Diguanylate cyclase, GGDEF domain JHS83_06985 PF17158 Membrane-associated sensor, integral membrane domain JHS83_07015 PF00384 Molybdopterin oxidoreductase JHS83_07015 PF01568 Molydopterin dinucleotide binding domain JHS83_07015 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JHS83_07020 PF13247 4Fe-4S dicluster domain JHS83_07020 PF12800 4Fe-4S binding domain JHS83_07025 PF04976 DMSO reductase anchor subunit (DmsC) JHS83_07030 PF02613 Nitrate reductase delta subunit JHS83_07040 PF02525 Flavodoxin-like fold JHS83_07045 PF00270 DEAD/DEAH box helicase JHS83_07045 PF11898 Domain of unknown function (DUF3418) JHS83_07045 PF04408 Helicase associated domain (HA2) JHS83_07045 PF00271 Helicase conserved C-terminal domain JHS83_07045 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold JHS83_07060 PF02028 BCCT, betaine/carnitine/choline family transporter JHS83_07070 PF02397 Bacterial sugar transferase JHS83_07075 PF00535 Glycosyl transferase family 2 JHS83_07080 PF13439 Glycosyltransferase Family 4 JHS83_07080 PF00534 Glycosyl transferases group 1 JHS83_07110 PF13439 Glycosyltransferase Family 4 JHS83_07110 PF00534 Glycosyl transferases group 1 JHS83_07115 PF13439 Glycosyltransferase Family 4 JHS83_07115 PF00534 Glycosyl transferases group 1 JHS83_07120 PF02954 Bacterial regulatory protein, Fis family JHS83_07120 PF00072 Response regulator receiver domain JHS83_07120 PF00158 Sigma-54 interaction domain JHS83_07135 PF02563 Polysaccharide biosynthesis/export protein JHS83_07135 PF10531 SLBB domain JHS83_07145 PF01740 STAS domain JHS83_07150 PF01068 ATP dependent DNA ligase domain JHS83_07150 PF14743 DNA ligase OB-like domain JHS83_07160 PF01554 MatE JHS83_07165 PF00677 Lumazine binding domain JHS83_07175 PF03881 Fructosamine kinase JHS83_07180 PF00072 Response regulator receiver domain JHS83_07180 PF01339 CheB methylesterase JHS83_07185 PF05230 MASE2 domain JHS83_07185 PF00990 Diguanylate cyclase, GGDEF domain JHS83_07195 PF00877 NlpC/P60 family JHS83_07200 PF12729 Four helix bundle sensory module for signal transduction JHS83_07200 PF00672 HAMP domain JHS83_07200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS83_07235 PF03942 DTW domain JHS83_07240 PF00480 ROK family JHS83_07250 PF00994 Probable molybdopterin binding domain JHS83_07250 PF03454 MoeA C-terminal region (domain IV) JHS83_07250 PF03453 MoeA N-terminal region (domain I and II) JHS83_07255 PF12804 MobA-like NTP transferase domain JHS83_07260 PF08402 TOBE domain JHS83_07260 PF00005 ABC transporter JHS83_07265 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_07270 PF12849 PBP superfamily domain JHS83_07275 PF00072 Response regulator receiver domain JHS83_07275 PF02954 Bacterial regulatory protein, Fis family JHS83_07275 PF00158 Sigma-54 interaction domain JHS83_07280 PF00512 His Kinase A (phospho-acceptor) domain JHS83_07280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_07285 PF12848 ABC transporter JHS83_07285 PF00005 ABC transporter JHS83_07290 PF02634 FdhD/NarQ family JHS83_07310 PF02613 Nitrate reductase delta subunit JHS83_07320 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JHS83_07320 PF00384 Molybdopterin oxidoreductase JHS83_07320 PF01568 Molydopterin dinucleotide binding domain JHS83_07325 PF13247 4Fe-4S dicluster domain JHS83_07340 PF03527 RHS protein JHS83_07340 PF05593 RHS Repeat JHS83_07360 PF00909 Ammonium Transporter Family JHS83_07370 PF02146 Sir2 family JHS83_07375 PF13416 Bacterial extracellular solute-binding protein JHS83_07380 PF13416 Bacterial extracellular solute-binding protein JHS83_07385 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_07390 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_07395 PF00005 ABC transporter JHS83_07395 PF08402 TOBE domain JHS83_07415 PF01171 PP-loop family JHS83_07420 PF00582 Universal stress protein family JHS83_07425 PF13545 Crp-like helix-turn-helix domain JHS83_07425 PF00027 Cyclic nucleotide-binding domain JHS83_07440 PF00403 Heavy-metal-associated domain JHS83_07450 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP JHS83_07450 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JHS83_07465 PF00115 Cytochrome C and Quinol oxidase polypeptide I JHS83_07480 PF00512 His Kinase A (phospho-acceptor) domain JHS83_07480 PF09308 LuxQ, periplasmic JHS83_07480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_07480 PF00072 Response regulator receiver domain JHS83_07545 PF06303 MatP N-terminal domain JHS83_07545 PF17414 MatP C-terminal ribbon-helix-helix domain JHS83_07550 PF05362 Lon protease (S16) C-terminal proteolytic domain JHS83_07550 PF13654 AAA domain JHS83_07555 PF07977 FabA-like domain JHS83_07560 PF04957 Ribosome modulation factor JHS83_07570 PF12848 ABC transporter JHS83_07570 PF16326 ABC transporter C-terminal domain JHS83_07570 PF00005 ABC transporter JHS83_07580 PF02926 THUMP domain JHS83_07580 PF10672 S-adenosylmethionine-dependent methyltransferase JHS83_07580 PF01170 Putative RNA methylase family UPF0020 JHS83_07585 PF07126 Cell-division protein ZapC JHS83_07590 PF01180 Dihydroorotate dehydrogenase JHS83_07595 PF05088 Bacterial NAD-glutamate dehydrogenase JHS83_07605 PF01433 Peptidase family M1 domain JHS83_07605 PF17432 Domain of unknown function (DUF3458_C) ARM repeats JHS83_07605 PF11940 Domain of unknown function (DUF3458) Ig-like fold JHS83_07615 PF11818 C-terminal domain of tail specific protease (DUF3340) JHS83_07615 PF00595 PDZ domain JHS83_07615 PF17804 Tail specific protease N-terminal domain JHS83_07615 PF03572 Peptidase family S41 JHS83_07620 PF04352 ProQ/FINO family JHS83_07620 PF17516 ProQ C-terminal domain JHS83_07625 PF13185 GAF domain JHS83_07630 PF00664 ABC transporter transmembrane region JHS83_07630 PF00005 ABC transporter JHS83_07635 PF04403 Paraquat-inducible protein A JHS83_07640 PF02470 MlaD protein JHS83_07645 PF01189 16S rRNA methyltransferase RsmB/F JHS83_07645 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF JHS83_07645 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF JHS83_07665 PF00793 DAHP synthetase I family JHS83_07670 PF04461 Protein of unknown function (DUF520) JHS83_07675 PF14824 Sirohaem biosynthesis protein central JHS83_07675 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JHS83_07675 PF10414 Sirohaem synthase dimerisation region JHS83_07680 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS83_07685 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_07690 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_07695 PF00005 ABC transporter JHS83_07700 PF01027 Inhibitor of apoptosis-promoting Bax1 JHS83_07710 PF04358 DsrC like protein JHS83_07715 PF00708 Acylphosphatase JHS83_07720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS83_07720 PF02743 Cache domain JHS83_07720 PF00672 HAMP domain JHS83_07725 PF10672 S-adenosylmethionine-dependent methyltransferase JHS83_07725 PF17785 PUA-like domain JHS83_07740 PF05736 OprF membrane domain JHS83_07740 PF00691 OmpA family JHS83_07755 PF00691 OmpA family JHS83_07755 PF05736 OprF membrane domain JHS83_07765 PF00990 Diguanylate cyclase, GGDEF domain JHS83_07765 PF17158 Membrane-associated sensor, integral membrane domain JHS83_07770 PF06508 Queuosine biosynthesis protein QueC JHS83_07775 PF04055 Radical SAM superfamily JHS83_07790 PF00089 Trypsin JHS83_07795 PF00583 Acetyltransferase (GNAT) family JHS83_07800 PF13193 AMP-binding enzyme C-terminal domain JHS83_07800 PF16177 Acetyl-coenzyme A synthetase N-terminus JHS83_07800 PF00501 AMP-binding enzyme JHS83_07805 PF04303 PrpF protein JHS83_07810 PF00694 Aconitase C-terminal domain JHS83_07810 PF00330 Aconitase family (aconitate hydratase) JHS83_07815 PF00285 Citrate synthase, C-terminal domain JHS83_07845 PF01970 Tripartite tricarboxylate transporter TctA family JHS83_07850 PF01925 Sulfite exporter TauE/SafE JHS83_07860 PF05844 YopD protein JHS83_07870 PF07720 Tetratricopeptide repeat JHS83_07875 PF04792 V antigen (LcrV) protein JHS83_07880 PF07216 LcrG protein JHS83_07885 PF09621 Type III secretion system regulator (LcrR) JHS83_07890 PF00771 FHIPEP family JHS83_07910 PF09059 TyeA JHS83_07915 PF07201 HrpJ-like domain JHS83_07920 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JHS83_07920 PF18269 T3SS EscN ATPase C-terminal domain JHS83_07920 PF02874 ATP synthase alpha/beta family, beta-barrel domain JHS83_07935 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JHS83_07940 PF00813 FliP family JHS83_07945 PF01313 Bacterial export proteins, family 3 JHS83_07950 PF01311 Bacterial export proteins, family 1 JHS83_07955 PF01312 FlhB HrpN YscU SpaS Family JHS83_07960 PF08360 QacR-like protein, C-terminal region JHS83_07960 PF00440 Bacterial regulatory proteins, tetR family JHS83_07975 PF13737 Transposase DDE domain JHS83_08005 PF02661 Fic/DOC family JHS83_08015 PF02108 Flagellar assembly protein FliH JHS83_08025 PF01514 Secretory protein of YscJ/FliF family JHS83_08030 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI JHS83_08040 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) JHS83_08045 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF JHS83_08055 PF16693 Inner membrane component of T3SS, periplasmic domain JHS83_08055 PF16697 Inner membrane component of T3SS, cytoplasmic domain JHS83_08060 PF03958 Bacterial type II/III secretion system short domain JHS83_08060 PF00263 Bacterial type II and III secretion system protein JHS83_08075 PF12833 Helix-turn-helix domain JHS83_08095 PF00171 Aldehyde dehydrogenase family JHS83_08100 PF02954 Bacterial regulatory protein, Fis family JHS83_08100 PF00158 Sigma-54 interaction domain JHS83_08100 PF01590 GAF domain JHS83_08125 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain JHS83_08125 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JHS83_08130 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JHS83_08135 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain JHS83_08135 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain JHS83_08140 PF12431 Transcriptional regulator JHS83_08140 PF00072 Response regulator receiver domain JHS83_08145 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain JHS83_08145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_08145 PF17203 Single cache domain 3 JHS83_08145 PF00989 PAS fold JHS83_08160 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS83_08175 PF00034 Cytochrome c JHS83_08175 PF03150 Di-haem cytochrome c peroxidase JHS83_08180 PF00696 Amino acid kinase family JHS83_08180 PF13840 ACT domain JHS83_08185 PF06339 Ectoine synthase JHS83_08190 PF00202 Aminotransferase class-III JHS83_08195 PF00583 Acetyltransferase (GNAT) family JHS83_08200 PF02028 BCCT, betaine/carnitine/choline family transporter JHS83_08215 PF00005 ABC transporter JHS83_08215 PF00571 CBS domain JHS83_08220 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_08225 PF04069 Substrate binding domain of ABC-type glycine betaine transport system JHS83_08235 PF00501 AMP-binding enzyme JHS83_08255 PF00072 Response regulator receiver domain JHS83_08255 PF00486 Transcriptional regulatory protein, C terminal JHS83_08260 PF08521 Two-component sensor kinase N-terminal JHS83_08260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_08260 PF00512 His Kinase A (phospho-acceptor) domain JHS83_08265 PF00884 Sulfatase JHS83_08290 PF01235 Sodium:alanine symporter family JHS83_08300 PF01810 LysE type translocator JHS83_08305 PF02074 Carboxypeptidase Taq (M32) metallopeptidase JHS83_08310 PF03279 Bacterial lipid A biosynthesis acyltransferase JHS83_08315 PF13520 Amino acid permease JHS83_08325 PF04204 Homoserine O-succinyltransferase JHS83_08340 PF03707 Bacterial signalling protein N terminal repeat JHS83_08340 PF00563 EAL domain JHS83_08340 PF00990 Diguanylate cyclase, GGDEF domain JHS83_08345 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JHS83_08345 PF00072 Response regulator receiver domain JHS83_08345 PF00672 HAMP domain JHS83_08345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_08345 PF00512 His Kinase A (phospho-acceptor) domain JHS83_08345 PF01627 Hpt domain JHS83_08360 PF00132 Bacterial transferase hexapeptide (six repeats) JHS83_08360 PF12464 Maltose acetyltransferase JHS83_08370 PF01928 CYTH domain JHS83_08380 PF04237 YjbR JHS83_08385 PF01047 MarR family JHS83_08395 PF12833 Helix-turn-helix domain JHS83_08400 PF01411 tRNA synthetases class II (A) JHS83_08400 PF02272 DHHA1 domain JHS83_08400 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JHS83_08410 PF00196 Bacterial regulatory proteins, luxR family JHS83_08410 PF00563 EAL domain JHS83_08415 PF02833 DHHA2 domain JHS83_08415 PF01368 DHH family JHS83_08420 PF00202 Aminotransferase class-III JHS83_08425 PF00171 Aldehyde dehydrogenase family JHS83_08430 PF04371 Porphyromonas-type peptidyl-arginine deiminase JHS83_08435 PF00795 Carbon-nitrogen hydrolase JHS83_08440 PF01266 FAD dependent oxidoreductase JHS83_08445 PF00171 Aldehyde dehydrogenase family JHS83_08450 PF01381 Helix-turn-helix JHS83_08450 PF07883 Cupin domain JHS83_08455 PF07722 Peptidase C26 JHS83_08460 PF00120 Glutamine synthetase, catalytic domain JHS83_08465 PF03553 Na+/H+ antiporter family JHS83_08520 PF13276 HTH-like domain JHS83_08520 PF00665 Integrase core domain JHS83_08520 PF13333 Integrase core domain JHS83_08530 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system JHS83_08535 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system JHS83_08645 PF13099 Domain of unknown function (DUF3944) JHS83_08645 PF03981 Ubiquinol-cytochrome C chaperone JHS83_08655 PF01337 Barstar (barnase inhibitor) JHS83_08690 PF00857 Isochorismatase family JHS83_08755 PF07516 SecA Wing and Scaffold domain JHS83_08755 PF02810 SEC-C motif JHS83_08755 PF07517 SecA DEAD-like domain JHS83_08755 PF01043 SecA preprotein cross-linking domain JHS83_08810 PF13737 Transposase DDE domain JHS83_08855 PF00589 Phage integrase family JHS83_08950 PF04463 Protein of unknown function (DUF523) JHS83_09000 PF02951 Prokaryotic glutathione synthetase, N-terminal domain JHS83_09000 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain JHS83_09020 PF01844 HNH endonuclease JHS83_09075 PF13737 Transposase DDE domain JHS83_09190 PF00583 Acetyltransferase (GNAT) family JHS83_09220 PF13495 Phage integrase, N-terminal SAM-like domain JHS83_09220 PF00589 Phage integrase family JHS83_09235 PF13302 Acetyltransferase (GNAT) domain JHS83_09240 PF00158 Sigma-54 interaction domain JHS83_09240 PF18024 Helix-turn-helix domain JHS83_09245 PF05128 Domain of unknown function (DUF697) JHS83_09250 PF04317 YcjX-like family, DUF463 JHS83_09265 PF04715 Anthranilate synthase component I, N terminal region JHS83_09265 PF00425 chorismate binding enzyme JHS83_09270 PF00512 His Kinase A (phospho-acceptor) domain JHS83_09270 PF09308 LuxQ, periplasmic JHS83_09270 PF00072 Response regulator receiver domain JHS83_09270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_09280 PF00293 NUDIX domain JHS83_09285 PF03222 Tryptophan/tyrosine permease family JHS83_09290 PF03313 Serine dehydratase alpha chain JHS83_09290 PF03315 Serine dehydratase beta chain JHS83_09295 PF00563 EAL domain JHS83_09295 PF04940 Sensors of blue-light using FAD JHS83_09305 PF01242 6-pyruvoyl tetrahydropterin synthase JHS83_09310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS83_09310 PF00672 HAMP domain JHS83_09310 PF12729 Four helix bundle sensory module for signal transduction JHS83_09315 PF00152 tRNA synthetases class II (D, K and N) JHS83_09315 PF01336 OB-fold nucleic acid binding domain JHS83_09325 PF00392 Bacterial regulatory proteins, gntR family JHS83_09325 PF00155 Aminotransferase class I and II JHS83_09340 PF00155 Aminotransferase class I and II JHS83_09360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS83_09360 PF00672 HAMP domain JHS83_09365 PF02028 BCCT, betaine/carnitine/choline family transporter JHS83_09370 PF01047 MarR family JHS83_09375 PF00196 Bacterial regulatory proteins, luxR family JHS83_09375 PF00072 Response regulator receiver domain JHS83_09380 PF07730 Histidine kinase JHS83_09380 PF17200 Single Cache domain 2 JHS83_09385 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JHS83_09395 PF03480 Bacterial extracellular solute-binding protein, family 7 JHS83_09410 PF00753 Metallo-beta-lactamase superfamily JHS83_09415 PF05951 Bacterial protein of unknown function (DUF882) JHS83_09420 PF03734 L,D-transpeptidase catalytic domain JHS83_09420 PF01471 Putative peptidoglycan binding domain JHS83_09445 PF00925 GTP cyclohydrolase II JHS83_09455 PF03918 Cytochrome C biogenesis protein JHS83_09460 PF08534 Redoxin JHS83_09465 PF01578 Cytochrome C assembly protein JHS83_09465 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal JHS83_09470 PF03916 Polysulphide reductase, NrfD JHS83_09475 PF13247 4Fe-4S dicluster domain JHS83_09485 PF02335 Cytochrome c552 JHS83_09500 PF03989 DNA gyrase C-terminal domain, beta-propeller JHS83_09500 PF00521 DNA gyrase/topoisomerase IV, subunit A JHS83_09510 PF02867 Ribonucleotide reductase, barrel domain JHS83_09510 PF00317 Ribonucleotide reductase, all-alpha domain JHS83_09510 PF03477 ATP cone domain JHS83_09515 PF00268 Ribonucleotide reductase, small chain JHS83_09525 PF00994 Probable molybdopterin binding domain JHS83_09540 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JHS83_09545 PF03435 Saccharopine dehydrogenase NADP binding domain JHS83_09545 PF16653 Saccharopine dehydrogenase C-terminal domain JHS83_09550 PF00202 Aminotransferase class-III JHS83_09575 PF01066 CDP-alcohol phosphatidyltransferase JHS83_09580 PF01541 GIY-YIG catalytic domain JHS83_09580 PF02151 UvrB/uvrC motif JHS83_09580 PF08459 UvrC Helix-hairpin-helix N-terminal JHS83_09585 PF00196 Bacterial regulatory proteins, luxR family JHS83_09585 PF00072 Response regulator receiver domain JHS83_09590 PF00136 DNA polymerase family B JHS83_09590 PF03104 DNA polymerase family B, exonuclease domain JHS83_09600 PF09285 Elongation factor P, C-terminal JHS83_09600 PF08207 Elongation factor P (EF-P) KOW-like domain JHS83_09600 PF01132 Elongation factor P (EF-P) OB domain JHS83_09605 PF04269 Protein of unknown function, DUF440 JHS83_09610 PF01479 S4 domain JHS83_09610 PF00849 RNA pseudouridylate synthase JHS83_09620 PF01300 Telomere recombination JHS83_09625 PF02811 PHP domain JHS83_09630 PF08056 Tryptophan operon leader peptide JHS83_09635 PF00425 chorismate binding enzyme JHS83_09635 PF04715 Anthranilate synthase component I, N terminal region JHS83_09640 PF00117 Glutamine amidotransferase class-I JHS83_09645 PF02885 Glycosyl transferase family, helical bundle domain JHS83_09645 PF00591 Glycosyl transferase family, a/b domain JHS83_09650 PF00218 Indole-3-glycerol phosphate synthase JHS83_09650 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase JHS83_09655 PF00291 Pyridoxal-phosphate dependent enzyme JHS83_09660 PF00290 Tryptophan synthase alpha chain JHS83_09665 PF00027 Cyclic nucleotide-binding domain JHS83_09665 PF13545 Crp-like helix-turn-helix domain JHS83_09670 PF00501 AMP-binding enzyme JHS83_09670 PF13193 AMP-binding enzyme C-terminal domain JHS83_09675 PF00375 Sodium:dicarboxylate symporter family JHS83_09680 PF17327 Acyl homoserine lactone synthase JHS83_09685 PF00072 Response regulator receiver domain JHS83_09685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_09695 PF04279 Intracellular septation protein A JHS83_09700 PF03061 Thioesterase superfamily JHS83_09705 PF03795 YCII-related domain JHS83_09715 PF01717 Cobalamin-independent synthase, Catalytic domain JHS83_09715 PF08267 Cobalamin-independent synthase, N-terminal domain JHS83_09720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_09720 PF03466 LysR substrate binding domain JHS83_09735 PF00990 Diguanylate cyclase, GGDEF domain JHS83_09735 PF01590 GAF domain JHS83_09735 PF00563 EAL domain JHS83_09735 PF00360 Phytochrome region JHS83_09740 PF08497 Radical SAM N-terminal JHS83_09740 PF11842 Domain of unknown function (DUF3362) JHS83_09740 PF04055 Radical SAM superfamily JHS83_09745 PF00672 HAMP domain JHS83_09745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS83_09750 PF00486 Transcriptional regulatory protein, C terminal JHS83_09750 PF00072 Response regulator receiver domain JHS83_09755 PF00512 His Kinase A (phospho-acceptor) domain JHS83_09755 PF00672 HAMP domain JHS83_09755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_09775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_09775 PF03466 LysR substrate binding domain JHS83_09780 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS83_09780 PF00529 HlyD membrane-fusion protein of T1SS JHS83_09790 PF01717 Cobalamin-independent synthase, Catalytic domain JHS83_09790 PF08267 Cobalamin-independent synthase, N-terminal domain JHS83_09800 PF02311 AraC-like ligand binding domain JHS83_09800 PF12833 Helix-turn-helix domain JHS83_09805 PF00857 Isochorismatase family JHS83_09810 PF02687 FtsX-like permease family JHS83_09810 PF12704 MacB-like periplasmic core domain JHS83_09810 PF00005 ABC transporter JHS83_09815 PF12704 MacB-like periplasmic core domain JHS83_09815 PF00005 ABC transporter JHS83_09815 PF02687 FtsX-like permease family JHS83_09820 PF00005 ABC transporter JHS83_09820 PF02687 FtsX-like permease family JHS83_09820 PF12704 MacB-like periplasmic core domain JHS83_09830 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS83_09850 PF00085 Thioredoxin JHS83_09855 PF11412 Disulphide bond corrector protein DsbC JHS83_09855 PF02683 Cytochrome C biogenesis protein transmembrane region JHS83_09865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_09865 PF03466 LysR substrate binding domain JHS83_09870 PF00196 Bacterial regulatory proteins, luxR family JHS83_09870 PF00072 Response regulator receiver domain JHS83_09875 PF00512 His Kinase A (phospho-acceptor) domain JHS83_09875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_09880 PF13247 4Fe-4S dicluster domain JHS83_09885 PF03916 Polysulphide reductase, NrfD JHS83_09890 PF01568 Molydopterin dinucleotide binding domain JHS83_09890 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JHS83_09890 PF00384 Molybdopterin oxidoreductase JHS83_09895 PF00034 Cytochrome c JHS83_09900 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JHS83_09905 PF04403 Paraquat-inducible protein A JHS83_09910 PF02470 MlaD protein JHS83_09920 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase JHS83_09930 PF00535 Glycosyl transferase family 2 JHS83_09935 PF01370 NAD dependent epimerase/dehydratase family JHS83_09945 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JHS83_09950 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JHS83_09955 PF18073 Rubredoxin metal binding domain JHS83_09960 PF06305 Lipopolysaccharide assembly protein A domain JHS83_09965 PF00216 Bacterial DNA-binding protein JHS83_09970 PF00575 S1 RNA binding domain JHS83_09975 PF02224 Cytidylate kinase JHS83_09980 PF01343 Peptidase family S49 JHS83_09980 PF08496 Peptidase family S49 N-terminal JHS83_09985 PF00106 short chain dehydrogenase JHS83_10000 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JHS83_10000 PF07733 Bacterial DNA polymerase III alpha NTPase domain JHS83_10000 PF14579 Helix-hairpin-helix motif JHS83_10000 PF02811 PHP domain JHS83_10000 PF01336 OB-fold nucleic acid binding domain JHS83_10005 PF00072 Response regulator receiver domain JHS83_10005 PF01584 CheW-like domain JHS83_10010 PF00480 ROK family JHS83_10015 PF02887 Pyruvate kinase, alpha/beta domain JHS83_10015 PF00224 Pyruvate kinase, barrel domain JHS83_10020 PF01734 Patatin-like phospholipase JHS83_10035 PF00209 Sodium:neurotransmitter symporter family JHS83_10050 PF00367 phosphotransferase system, EIIB JHS83_10050 PF02378 Phosphotransferase system, EIIC JHS83_10055 PF01026 TatD related DNase JHS83_10060 PF09115 DNA polymerase III, delta subunit, C terminal JHS83_10065 PF02223 Thymidylate kinase JHS83_10070 PF02618 YceG-like family JHS83_10075 PF01063 Amino-transferase class IV JHS83_10080 PF00109 Beta-ketoacyl synthase, N-terminal domain JHS83_10080 PF02801 Beta-ketoacyl synthase, C-terminal domain JHS83_10085 PF00550 Phosphopantetheine attachment site JHS83_10095 PF00698 Acyl transferase domain JHS83_10100 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JHS83_10100 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JHS83_10105 PF02504 Fatty acid synthesis protein JHS83_10110 PF01783 Ribosomal L32p protein family JHS83_10115 PF02620 Large ribosomal RNA subunit accumulation protein YceD JHS83_10120 PF02545 Maf-like protein JHS83_10125 PF01479 S4 domain JHS83_10125 PF00849 RNA pseudouridylate synthase JHS83_10130 PF10150 Ribonuclease E/G family JHS83_10130 PF12111 Polyribonucleotide phosphorylase C terminal JHS83_10130 PF00575 S1 RNA binding domain JHS83_10135 PF00916 Sulfate permease family JHS83_10135 PF01740 STAS domain JHS83_10140 PF01451 Low molecular weight phosphotyrosine protein phosphatase JHS83_10145 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP JHS83_10145 PF12557 Cob(I)alamin adenosyltransferase N terminal JHS83_10155 PF00485 Phosphoribulokinase / Uridine kinase family JHS83_10160 PF10609 NUBPL iron-transfer P-loop NTPase JHS83_10165 PF09334 tRNA synthetases class I (M) JHS83_10165 PF01588 Putative tRNA binding domain JHS83_10175 PF07840 FadR C-terminal domain JHS83_10175 PF00392 Bacterial regulatory proteins, gntR family JHS83_10180 PF06450 Bacterial Na+/H+ antiporter B (NhaB) JHS83_10185 PF02600 Disulfide bond formation protein DsbB JHS83_10190 PF07516 SecA Wing and Scaffold domain JHS83_10190 PF01043 SecA preprotein cross-linking domain JHS83_10190 PF07517 SecA DEAD-like domain JHS83_10190 PF02810 SEC-C motif JHS83_10195 PF01207 Dihydrouridine synthase (Dus) JHS83_10200 PF00072 Response regulator receiver domain JHS83_10200 PF00990 Diguanylate cyclase, GGDEF domain JHS83_10205 PF02903 Alpha amylase, N-terminal ig-like domain JHS83_10205 PF00128 Alpha amylase, catalytic domain JHS83_10210 PF00005 ABC transporter JHS83_10215 PF02653 Branched-chain amino acid transport system / permease component JHS83_10225 PF04217 Protein of unknown function, DUF412 JHS83_10230 PF00871 Acetokinase family JHS83_10235 PF07085 DRTGG domain JHS83_10235 PF01515 Phosphate acetyl/butaryl transferase JHS83_10240 PF13194 Domain of unknown function (DUF4010) JHS83_10250 PF13409 Glutathione S-transferase, N-terminal domain JHS83_10255 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS83_10255 PF00005 ABC transporter JHS83_10260 PF00005 ABC transporter JHS83_10260 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS83_10265 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_10265 PF12911 N-terminal TM domain of oligopeptide transport permease C JHS83_10270 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_10275 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JHS83_10280 PF02391 MoaE protein JHS83_10285 PF02597 ThiS family JHS83_10290 PF01967 MoaC family JHS83_10295 PF00994 Probable molybdopterin binding domain JHS83_10300 PF06463 Molybdenum Cofactor Synthesis C JHS83_10300 PF04055 Radical SAM superfamily JHS83_10305 PF01933 Uncharacterised protein family UPF0052 JHS83_10310 PF01627 Hpt domain JHS83_10315 PF00158 Sigma-54 interaction domain JHS83_10315 PF00072 Response regulator receiver domain JHS83_10315 PF02954 Bacterial regulatory protein, Fis family JHS83_10320 PF00271 Helicase conserved C-terminal domain JHS83_10320 PF17757 UvrB interaction domain JHS83_10320 PF12344 Ultra-violet resistance protein B JHS83_10320 PF02151 UvrB/uvrC motif JHS83_10320 PF04851 Type III restriction enzyme, res subunit JHS83_10330 PF02508 Rnf-Nqr subunit, membrane protein JHS83_10335 PF04060 Putative Fe-S cluster JHS83_10340 PF13375 RnfC Barrel sandwich hybrid domain JHS83_10340 PF12838 4Fe-4S dicluster domain JHS83_10340 PF10531 SLBB domain JHS83_10340 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JHS83_10345 PF03116 NQR2, RnfD, RnfE family JHS83_10350 PF04205 FMN-binding domain JHS83_10355 PF02508 Rnf-Nqr subunit, membrane protein JHS83_10360 PF10576 Iron-sulfur binding domain of endonuclease III JHS83_10360 PF00633 Helix-hairpin-helix motif JHS83_10360 PF00730 HhH-GPD superfamily base excision DNA repair protein JHS83_10365 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JHS83_10370 PF10952 Protein of unknown function (DUF2753) JHS83_10375 PF18393 MotY N-terminal domain JHS83_10375 PF00691 OmpA family JHS83_10380 PF00929 Exonuclease JHS83_10385 PF03553 Na+/H+ antiporter family JHS83_10385 PF13726 Na+-H+ antiporter family JHS83_10405 PF02556 Preprotein translocase subunit SecB JHS83_10425 PF05840 Bacteriophage replication gene A protein (GPA) JHS83_10450 PF06892 Phage regulatory protein CII (CP76) JHS83_10470 PF01844 HNH endonuclease JHS83_10490 PF00145 C-5 cytosine-specific DNA methylase JHS83_10500 PF00462 Glutaredoxin JHS83_10505 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JHS83_10505 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JHS83_10520 PF00171 Aldehyde dehydrogenase family JHS83_10520 PF00465 Iron-containing alcohol dehydrogenase JHS83_10525 PF01914 MarC family integral membrane protein JHS83_10530 PF00520 Ion transport protein JHS83_10530 PF00027 Cyclic nucleotide-binding domain JHS83_10535 PF01118 Semialdehyde dehydrogenase, NAD binding domain JHS83_10535 PF02774 Semialdehyde dehydrogenase, dimerisation domain JHS83_10540 PF03553 Na+/H+ antiporter family JHS83_10555 PF04245 37-kD nucleoid-associated bacterial protein JHS83_10560 PF07208 Protein of unknown function (DUF1414) JHS83_10565 PF11893 Domain of unknown function (DUF3413) JHS83_10565 PF00884 Sulfatase JHS83_10575 PF00850 Histone deacetylase domain JHS83_10580 PF00106 short chain dehydrogenase JHS83_10590 PF01131 DNA topoisomerase JHS83_10590 PF01751 Toprim domain JHS83_10595 PF00881 Nitroreductase family JHS83_10600 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JHS83_10600 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS83_10605 PF01343 Peptidase family S49 JHS83_10610 PF00710 Asparaginase, N-terminal JHS83_10610 PF17763 Glutaminase/Asparaginase C-terminal domain JHS83_10615 PF07023 Protein of unknown function (DUF1315) JHS83_10625 PF01641 SelR domain JHS83_10630 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JHS83_10630 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JHS83_10635 PF01263 Aldose 1-epimerase JHS83_10640 PF02743 Cache domain JHS83_10640 PF00672 HAMP domain JHS83_10640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS83_10645 PF13847 Methyltransferase domain JHS83_10660 PF00245 Alkaline phosphatase JHS83_10670 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JHS83_10675 PF03992 Antibiotic biosynthesis monooxygenase JHS83_10680 PF05552 Conserved TM helix JHS83_10680 PF00924 Mechanosensitive ion channel JHS83_10685 PF03692 Putative zinc- or iron-chelating domain JHS83_10690 PF04226 Transglycosylase associated protein JHS83_10695 PF03692 Putative zinc- or iron-chelating domain JHS83_10705 PF03313 Serine dehydratase alpha chain JHS83_10710 PF01042 Endoribonuclease L-PSP JHS83_10720 PF00230 Major intrinsic protein JHS83_10725 PF13662 Toprim domain JHS83_10725 PF02132 RecR protein JHS83_10730 PF02575 YbaB/EbfC DNA-binding family JHS83_10735 PF12169 DNA polymerase III subunits gamma and tau domain III JHS83_10735 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding JHS83_10735 PF12170 DNA polymerase III tau subunit V interacting with alpha JHS83_10740 PF00156 Phosphoribosyl transferase domain JHS83_10745 PF04304 Protein of unknown function (DUF454) JHS83_10750 PF00072 Response regulator receiver domain JHS83_10755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_10755 PF03466 LysR substrate binding domain JHS83_10760 PF00156 Phosphoribosyl transferase domain JHS83_10765 PF02674 Colicin V production protein JHS83_10770 PF05036 Sporulation related domain JHS83_10775 PF08245 Mur ligase middle domain JHS83_10775 PF02875 Mur ligase family, glutamate ligase domain JHS83_10780 PF01039 Carboxyl transferase domain JHS83_10780 PF17848 Acetyl-coA carboxylase zinc finger domain JHS83_10785 PF01416 tRNA pseudouridine synthase JHS83_10795 PF01118 Semialdehyde dehydrogenase, NAD binding domain JHS83_10795 PF02774 Semialdehyde dehydrogenase, dimerisation domain JHS83_10800 PF11890 Domain of unknown function (DUF3410) JHS83_10800 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JHS83_10800 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JHS83_10805 PF00109 Beta-ketoacyl synthase, N-terminal domain JHS83_10805 PF02801 Beta-ketoacyl synthase, C-terminal domain JHS83_10810 PF01266 FAD dependent oxidoreductase JHS83_10810 PF05430 S-adenosyl-L-methionine-dependent methyltransferase JHS83_10815 PF03358 NADPH-dependent FMN reductase JHS83_10820 PF08891 YfcL protein JHS83_10825 PF04315 Elongation factor P hydroxylase JHS83_10830 PF03458 UPF0126 domain JHS83_10835 PF01264 Chorismate synthase JHS83_10840 PF05175 Methyltransferase small domain JHS83_10845 PF01713 Smr domain JHS83_10850 PF00300 Histidine phosphatase superfamily (branch 1) JHS83_10855 PF05193 Peptidase M16 inactive domain JHS83_10855 PF00675 Insulinase (Peptidase family M16) JHS83_10855 PF16187 Middle or third domain of peptidase_M16 JHS83_10865 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JHS83_10865 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JHS83_10865 PF00378 Enoyl-CoA hydratase/isomerase JHS83_10870 PF02803 Thiolase, C-terminal domain JHS83_10870 PF00108 Thiolase, N-terminal domain JHS83_10875 PF04542 Sigma-70 region 2 JHS83_10875 PF08281 Sigma-70, region 4 JHS83_10890 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JHS83_10895 PF04333 MlaA lipoprotein JHS83_10905 PF03918 Cytochrome C biogenesis protein JHS83_10910 PF08534 Redoxin JHS83_10915 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal JHS83_10915 PF01578 Cytochrome C assembly protein JHS83_10920 PF03100 CcmE JHS83_10925 PF04995 Heme exporter protein D (CcmD) JHS83_10930 PF01578 Cytochrome C assembly protein JHS83_10935 PF03379 CcmB protein JHS83_10940 PF00005 ABC transporter JHS83_10950 PF01584 CheW-like domain JHS83_10960 PF13614 AAA domain JHS83_10965 PF00072 Response regulator receiver domain JHS83_10965 PF01339 CheB methylesterase JHS83_10970 PF01584 CheW-like domain JHS83_10970 PF02895 Signal transducing histidine kinase, homodimeric domain JHS83_10970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_10970 PF00072 Response regulator receiver domain JHS83_10970 PF01627 Hpt domain JHS83_10975 PF04344 Chemotaxis phosphatase, CheZ JHS83_10980 PF00072 Response regulator receiver domain JHS83_10985 PF04539 Sigma-70 region 3 JHS83_10985 PF04545 Sigma-70, region 4 JHS83_10985 PF04542 Sigma-70 region 2 JHS83_10990 PF10609 NUBPL iron-transfer P-loop NTPase JHS83_10995 PF00448 SRP54-type protein, GTPase domain JHS83_11000 PF00771 FHIPEP family JHS83_11005 PF01312 FlhB HrpN YscU SpaS Family JHS83_11010 PF01311 Bacterial export proteins, family 1 JHS83_11015 PF01313 Bacterial export proteins, family 3 JHS83_11020 PF00813 FliP family JHS83_11025 PF04347 Flagellar biosynthesis protein, FliO JHS83_11030 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JHS83_11035 PF02154 Flagellar motor switch protein FliM JHS83_11035 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JHS83_11055 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JHS83_11055 PF18269 T3SS EscN ATPase C-terminal domain JHS83_11065 PF14841 FliG middle domain JHS83_11065 PF14842 FliG N-terminal domain JHS83_11065 PF01706 FliG C-terminal domain JHS83_11070 PF08345 Flagellar M-ring protein C-terminal JHS83_11070 PF01514 Secretory protein of YscJ/FliF family JHS83_11075 PF02049 Flagellar hook-basal body complex protein FliE JHS83_11080 PF02954 Bacterial regulatory protein, Fis family JHS83_11080 PF00072 Response regulator receiver domain JHS83_11080 PF00158 Sigma-54 interaction domain JHS83_11085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_11085 PF00512 His Kinase A (phospho-acceptor) domain JHS83_11085 PF13188 PAS domain JHS83_11090 PF06490 Flagellar regulatory protein FleQ JHS83_11090 PF02954 Bacterial regulatory protein, Fis family JHS83_11090 PF00158 Sigma-54 interaction domain JHS83_11095 PF02561 Flagellar protein FliS JHS83_11105 PF02465 Flagellar hook-associated protein 2 N-terminus JHS83_11105 PF07196 Flagellin hook IN motif JHS83_11105 PF07195 Flagellar hook-associated protein 2 C-terminus JHS83_11110 PF03646 FlaG protein JHS83_11115 PF00700 Bacterial flagellin C-terminal helical region JHS83_11115 PF07196 Flagellin hook IN motif JHS83_11115 PF00669 Bacterial flagellin N-terminal helical region JHS83_11120 PF00700 Bacterial flagellin C-terminal helical region JHS83_11120 PF00669 Bacterial flagellin N-terminal helical region JHS83_11120 PF07196 Flagellin hook IN motif JHS83_11125 PF00700 Bacterial flagellin C-terminal helical region JHS83_11125 PF07196 Flagellin hook IN motif JHS83_11125 PF00669 Bacterial flagellin N-terminal helical region JHS83_11130 PF04261 Dyp-type peroxidase family JHS83_11135 PF11143 Protein of unknown function (DUF2919) JHS83_11155 PF03960 ArsC family JHS83_11160 PF07687 Peptidase dimerisation domain JHS83_11160 PF01546 Peptidase family M20/M25/M40 JHS83_11175 PF06804 NlpB/DapX lipoprotein JHS83_11180 PF00701 Dihydrodipicolinate synthetase family JHS83_11185 PF01842 ACT domain JHS83_11190 PF00578 AhpC/TSA family JHS83_11195 PF01594 AI-2E family transporter JHS83_11205 PF01435 Peptidase family M48 JHS83_11205 PF13181 Tetratricopeptide repeat JHS83_11210 PF03960 ArsC family JHS83_11215 PF03358 NADPH-dependent FMN reductase JHS83_11230 PF00860 Permease family JHS83_11240 PF00586 AIR synthase related protein, N-terminal domain JHS83_11240 PF02769 AIR synthase related protein, C-terminal domain JHS83_11245 PF00551 Formyl transferase JHS83_11250 PF13230 Glutamine amidotransferases class-II JHS83_11255 PF13580 SIS domain JHS83_11260 PF09317 Domain of unknown function (DUF1974) JHS83_11260 PF02770 Acyl-CoA dehydrogenase, middle domain JHS83_11260 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JHS83_11260 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JHS83_11270 PF00583 Acetyltransferase (GNAT) family JHS83_11290 PF00929 Exonuclease JHS83_11295 PF00075 RNase H JHS83_11300 PF08241 Methyltransferase domain JHS83_11305 PF16123 Hydroxyacylglutathione hydrolase C-terminus JHS83_11305 PF00753 Metallo-beta-lactamase superfamily JHS83_11310 PF01476 LysM domain JHS83_11310 PF01464 Transglycosylase SLT domain JHS83_11320 PF03372 Endonuclease/Exonuclease/phosphatase family JHS83_11325 PF00543 Nitrogen regulatory protein P-II JHS83_11330 PF00034 Cytochrome c JHS83_11335 PF01171 PP-loop family JHS83_11335 PF09179 TilS substrate binding domain JHS83_11335 PF11734 TilS substrate C-terminal domain JHS83_11340 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit JHS83_11345 PF14579 Helix-hairpin-helix motif JHS83_11345 PF02811 PHP domain JHS83_11345 PF07733 Bacterial DNA polymerase III alpha NTPase domain JHS83_11345 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JHS83_11345 PF01336 OB-fold nucleic acid binding domain JHS83_11350 PF01351 Ribonuclease HII JHS83_11355 PF02684 Lipid-A-disaccharide synthetase JHS83_11360 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 JHS83_11360 PF00132 Bacterial transferase hexapeptide (six repeats) JHS83_11365 PF07977 FabA-like domain JHS83_11370 PF00132 Bacterial transferase hexapeptide (six repeats) JHS83_11370 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD JHS83_11375 PF03938 Outer membrane protein (OmpH-like) JHS83_11380 PF01103 Surface antigen JHS83_11380 PF07244 Surface antigen variable number repeat JHS83_11385 PF17820 PDZ domain JHS83_11385 PF02163 Peptidase family M50 JHS83_11390 PF13288 DXP reductoisomerase C-terminal domain JHS83_11390 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase JHS83_11390 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain JHS83_11400 PF01255 Putative undecaprenyl diphosphate synthase JHS83_11405 PF01765 Ribosome recycling factor JHS83_11410 PF00696 Amino acid kinase family JHS83_11415 PF00889 Elongation factor TS JHS83_11420 PF00318 Ribosomal protein S2 JHS83_11425 PF00557 Metallopeptidase family M24 JHS83_11430 PF01842 ACT domain JHS83_11430 PF08335 GlnD PII-uridylyltransferase JHS83_11430 PF01966 HD domain JHS83_11430 PF01909 Nucleotidyltransferase domain JHS83_11435 PF11944 Protein of unknown function (DUF3461) JHS83_11440 PF00849 RNA pseudouridylate synthase JHS83_11445 PF04287 tRNA pseudouridine synthase C JHS83_11470 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 JHS83_11475 PF03806 AbgT putative transporter family JHS83_11480 PF00444 Ribosomal protein L36 JHS83_11485 PF01197 Ribosomal protein L31 JHS83_11490 PF01980 tRNA-methyltransferase O JHS83_11490 PF18389 TrmO C-terminal domain JHS83_11495 PF03129 Anticodon binding domain JHS83_11495 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JHS83_11495 PF04073 Aminoacyl-tRNA editing domain JHS83_11505 PF06786 Uncharacterised protein family (UPF0253) JHS83_11515 PF00209 Sodium:neurotransmitter symporter family JHS83_11530 PF01272 Transcription elongation factor, GreA/GreB, C-term JHS83_11530 PF03449 Transcription elongation factor, N-terminal JHS83_11535 PF09382 RQC domain JHS83_11535 PF16124 RecQ zinc-binding JHS83_11535 PF00271 Helicase conserved C-terminal domain JHS83_11535 PF00270 DEAD/DEAH box helicase JHS83_11535 PF00570 HRDC domain JHS83_11540 PF00817 impB/mucB/samB family JHS83_11540 PF11799 impB/mucB/samB family C-terminal domain JHS83_11540 PF11798 IMS family HHH motif JHS83_11545 PF00817 impB/mucB/samB family JHS83_11545 PF11799 impB/mucB/samB family C-terminal domain JHS83_11545 PF11798 IMS family HHH motif JHS83_11565 PF02463 RecF/RecN/SMC N terminal domain JHS83_11570 PF00580 UvrD/REP helicase N-terminal domain JHS83_11570 PF13361 UvrD-like helicase C-terminal domain JHS83_11630 PF02424 ApbE family JHS83_11635 PF00175 Oxidoreductase NAD-binding domain JHS83_11635 PF00111 2Fe-2S iron-sulfur cluster binding domain JHS83_11635 PF00970 Oxidoreductase FAD-binding domain JHS83_11640 PF02508 Rnf-Nqr subunit, membrane protein JHS83_11645 PF02508 Rnf-Nqr subunit, membrane protein JHS83_11650 PF04205 FMN-binding domain JHS83_11655 PF03116 NQR2, RnfD, RnfE family JHS83_11660 PF11973 NQRA C-terminal domain JHS83_11660 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) JHS83_11665 PF01722 BolA-like protein JHS83_11670 PF05175 Methyltransferase small domain JHS83_11675 PF08139 Prokaryotic membrane lipoprotein lipid attachment site JHS83_11675 PF03923 Uncharacterized lipoprotein JHS83_11680 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JHS83_11685 PF07690 Major Facilitator Superfamily JHS83_11695 PF04542 Sigma-70 region 2 JHS83_11695 PF04545 Sigma-70, region 4 JHS83_11710 PF03502 Nucleoside-specific channel-forming protein, Tsx JHS83_11715 PF02558 Ketopantoate reductase PanE/ApbA JHS83_11715 PF08546 Ketopantoate reductase PanE/ApbA C terminal JHS83_11720 PF01965 DJ-1/PfpI family JHS83_11725 PF00266 Aminotransferase class-V JHS83_11730 PF17158 Membrane-associated sensor, integral membrane domain JHS83_11730 PF00990 Diguanylate cyclase, GGDEF domain JHS83_11735 PF02657 Fe-S metabolism associated domain JHS83_11740 PF00899 ThiF family JHS83_11745 PF06725 3D domain JHS83_11745 PF03562 MltA specific insert domain JHS83_11755 PF00696 Amino acid kinase family JHS83_11755 PF00583 Acetyltransferase (GNAT) family JHS83_11765 PF13538 UvrD-like helicase C-terminal domain JHS83_11770 PF12705 PD-(D/E)XK nuclease superfamily JHS83_11770 PF00580 UvrD/REP helicase N-terminal domain JHS83_11770 PF13361 UvrD-like helicase C-terminal domain JHS83_11775 PF17946 RecC C-terminal domain JHS83_11780 PF11893 Domain of unknown function (DUF3413) JHS83_11780 PF00884 Sulfatase JHS83_11790 PF03466 LysR substrate binding domain JHS83_11790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_11795 PF07130 YebG protein JHS83_11800 PF14602 Hexapeptide repeat of succinyl-transferase JHS83_11800 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle JHS83_11805 PF03009 Glycerophosphoryl diester phosphodiesterase family JHS83_11810 PF07690 Major Facilitator Superfamily JHS83_11815 PF00230 Major intrinsic protein JHS83_11820 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JHS83_11820 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JHS83_11825 PF00455 DeoR C terminal sensor domain JHS83_11825 PF08220 DeoR-like helix-turn-helix domain JHS83_11830 PF16901 C-terminal domain of alpha-glycerophosphate oxidase JHS83_11830 PF01266 FAD dependent oxidoreductase JHS83_11835 PF01544 CorA-like Mg2+ transporter protein JHS83_11850 PF01588 Putative tRNA binding domain JHS83_11855 PF00356 Bacterial regulatory proteins, lacI family JHS83_11870 PF00356 Bacterial regulatory proteins, lacI family JHS83_11875 PF01263 Aldose 1-epimerase JHS83_11880 PF10509 Galactokinase galactose-binding signature JHS83_11880 PF08544 GHMP kinases C terminal JHS83_11880 PF00288 GHMP kinases N terminal domain JHS83_11885 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain JHS83_11885 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain JHS83_11890 PF16363 GDP-mannose 4,6 dehydratase JHS83_11895 PF00356 Bacterial regulatory proteins, lacI family JHS83_11900 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JHS83_11900 PF02837 Glycosyl hydrolases family 2, sugar binding domain JHS83_11900 PF00703 Glycosyl hydrolases family 2 JHS83_11900 PF02929 Beta galactosidase small chain JHS83_11900 PF16353 Domain of unknown function(DUF4981) JHS83_11905 PF04074 YhcH/YjgK/YiaL JHS83_11910 PF13520 Amino acid permease JHS83_11915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_11915 PF03466 LysR substrate binding domain JHS83_11950 PF00437 Type II/IV secretion system protein JHS83_11980 PF13629 Pilus formation protein N terminal region JHS83_11980 PF04972 BON domain JHS83_11980 PF00263 Bacterial type II and III secretion system protein JHS83_12005 PF12833 Helix-turn-helix domain JHS83_12005 PF02805 Metal binding domain of Ada JHS83_12010 PF00501 AMP-binding enzyme JHS83_12020 PF03466 LysR substrate binding domain JHS83_12020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_12025 PF00679 Elongation factor G C-terminus JHS83_12025 PF14492 Elongation Factor G, domain II JHS83_12025 PF03764 Elongation factor G, domain IV JHS83_12025 PF00009 Elongation factor Tu GTP binding domain JHS83_12025 PF03144 Elongation factor Tu domain 2 JHS83_12030 PF18073 Rubredoxin metal binding domain JHS83_12040 PF18429 Domain of unknown function (DUF5609) JHS83_12050 PF01048 Phosphorylase superfamily JHS83_12055 PF01676 Metalloenzyme superfamily JHS83_12060 PF02885 Glycosyl transferase family, helical bundle domain JHS83_12060 PF00591 Glycosyl transferase family, a/b domain JHS83_12060 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain JHS83_12065 PF01791 DeoC/LacD family aldolase JHS83_12070 PF07670 Nucleoside recognition JHS83_12070 PF01773 Na+ dependent nucleoside transporter N-terminus JHS83_12070 PF07662 Na+ dependent nucleoside transporter C-terminus JHS83_12075 PF01026 TatD related DNase JHS83_12085 PF00009 Elongation factor Tu GTP binding domain JHS83_12085 PF03144 Elongation factor Tu domain 2 JHS83_12085 PF16658 Class II release factor RF3, C-terminal domain JHS83_12105 PF13508 Acetyltransferase (GNAT) domain JHS83_12110 PF02036 SCP-2 sterol transfer family JHS83_12115 PF00990 Diguanylate cyclase, GGDEF domain JHS83_12115 PF03707 Bacterial signalling protein N terminal repeat JHS83_12115 PF00563 EAL domain JHS83_12120 PF01136 Peptidase family U32 JHS83_12125 PF01136 Peptidase family U32 JHS83_12130 PF01554 MatE JHS83_12140 PF07719 Tetratricopeptide repeat JHS83_12140 PF13181 Tetratricopeptide repeat JHS83_12145 PF00013 KH domain JHS83_12145 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JHS83_12145 PF01138 3' exoribonuclease family, domain 1 JHS83_12145 PF03725 3' exoribonuclease family, domain 2 JHS83_12145 PF00575 S1 RNA binding domain JHS83_12150 PF00312 Ribosomal protein S15 JHS83_12155 PF16198 tRNA pseudouridylate synthase B C-terminal domain JHS83_12155 PF01509 TruB family pseudouridylate synthase (N terminal domain) JHS83_12155 PF09157 Pseudouridine synthase II TruB, C-terminal JHS83_12160 PF02033 Ribosome-binding factor A JHS83_12165 PF00009 Elongation factor Tu GTP binding domain JHS83_12165 PF11987 Translation-initiation factor 2 JHS83_12165 PF08364 Bacterial translation initiation factor IF-2 associated region JHS83_12165 PF04760 Translation initiation factor IF-2, N-terminal region JHS83_12170 PF13184 NusA-like KH domain JHS83_12170 PF08529 NusA N-terminal domain JHS83_12170 PF00575 S1 RNA binding domain JHS83_12175 PF02576 RimP N-terminal domain JHS83_12175 PF17384 RimP C-terminal SH3 domain JHS83_12190 PF03840 Preprotein translocase SecG subunit JHS83_12195 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JHS83_12195 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JHS83_12195 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JHS83_12195 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JHS83_12200 PF00809 Pterin binding enzyme JHS83_12205 PF06480 FtsH Extracellular JHS83_12205 PF17862 AAA+ lid domain JHS83_12205 PF00004 ATPase family associated with various cellular activities (AAA) JHS83_12205 PF01434 Peptidase family M41 JHS83_12210 PF01728 FtsJ-like methyltransferase JHS83_12215 PF01985 CRS1 / YhbY (CRM) domain JHS83_12220 PF01272 Transcription elongation factor, GreA/GreB, C-term JHS83_12220 PF03449 Transcription elongation factor, N-terminal JHS83_12225 PF13609 Gram-negative porin JHS83_12230 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family JHS83_12240 PF00579 tRNA synthetases class I (W and Y) JHS83_12245 PF01476 LysM domain JHS83_12245 PF01551 Peptidase family M23 JHS83_12245 PF08525 Opacity-associated protein A N-terminal motif JHS83_12250 PF00873 AcrB/AcrD/AcrF family JHS83_12260 PF01521 Iron-sulphur cluster biosynthesis JHS83_12265 PF00202 Aminotransferase class-III JHS83_12270 PF01594 AI-2E family transporter JHS83_12275 PF05175 Methyltransferase small domain JHS83_12275 PF08468 Methyltransferase small domain N-terminal JHS83_12280 PF00072 Response regulator receiver domain JHS83_12280 PF00512 His Kinase A (phospho-acceptor) domain JHS83_12280 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS83_12280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_12285 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JHS83_12290 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_12295 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_12295 PF12911 N-terminal TM domain of oligopeptide transport permease C JHS83_12300 PF00005 ABC transporter JHS83_12300 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS83_12305 PF00005 ABC transporter JHS83_12305 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS83_12315 PF01869 BadF/BadG/BcrA/BcrD ATPase family JHS83_12320 PF00728 Glycosyl hydrolase family 20, catalytic domain JHS83_12320 PF02838 Glycosyl hydrolase family 20, domain 2 JHS83_12325 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain JHS83_12325 PF06165 Glycosyltransferase family 36 JHS83_12330 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JHS83_12330 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JHS83_12330 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JHS83_12330 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JHS83_12335 PF08402 TOBE domain JHS83_12335 PF00005 ABC transporter JHS83_12345 PF13416 Bacterial extracellular solute-binding protein JHS83_12350 PF00909 Ammonium Transporter Family JHS83_12355 PF00543 Nitrogen regulatory protein P-II JHS83_12360 PF06062 Uncharacterised protein family (UPF0231) JHS83_12365 PF11791 Aconitate B N-terminal domain JHS83_12365 PF00330 Aconitase family (aconitate hydratase) JHS83_12365 PF06434 Aconitate hydratase 2 N-terminus JHS83_12370 PF01734 Patatin-like phospholipase JHS83_12375 PF00912 Transglycosylase JHS83_12375 PF00905 Penicillin binding protein transpeptidase domain JHS83_12375 PF14814 Bifunctional transglycosylase second domain JHS83_12380 PF00270 DEAD/DEAH box helicase JHS83_12380 PF04408 Helicase associated domain (HA2) JHS83_12380 PF00271 Helicase conserved C-terminal domain JHS83_12380 PF08482 ATP-dependent helicase C-terminal JHS83_12385 PF03749 Sugar fermentation stimulation protein RE domain JHS83_12385 PF17746 SfsA N-terminal OB domain JHS83_12390 PF01258 Prokaryotic dksA/traR C4-type zinc finger JHS83_12395 PF00749 tRNA synthetases class I (E and Q), catalytic domain JHS83_12400 PF12626 Polymerase A arginine-rich C-terminus JHS83_12400 PF12627 Probable RNA and SrmB- binding site of polymerase A JHS83_12400 PF01743 Poly A polymerase head domain JHS83_12405 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JHS83_12410 PF02548 Ketopantoate hydroxymethyltransferase JHS83_12415 PF02569 Pantoate-beta-alanine ligase JHS83_12420 PF03279 Bacterial lipid A biosynthesis acyltransferase JHS83_12425 PF01061 ABC-2 type transporter JHS83_12430 PF00005 ABC transporter JHS83_12435 PF01740 STAS domain JHS83_12435 PF00916 Sulfate permease family JHS83_12440 PF00484 Carbonic anhydrase JHS83_12445 PF00156 Phosphoribosyl transferase domain JHS83_12450 PF00440 Bacterial regulatory proteins, tetR family JHS83_12455 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JHS83_12455 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS83_12460 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JHS83_12460 PF00364 Biotin-requiring enzyme JHS83_12460 PF02817 e3 binding domain JHS83_12465 PF17831 Pyruvate dehydrogenase E1 component middle domain JHS83_12465 PF00456 Transketolase, thiamine diphosphate binding domain JHS83_12470 PF07729 FCD domain JHS83_12470 PF00392 Bacterial regulatory proteins, gntR family JHS83_12475 PF01510 N-acetylmuramoyl-L-alanine amidase JHS83_12480 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain JHS83_12480 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain JHS83_12485 PF07963 Prokaryotic N-terminal methylation motif JHS83_12485 PF00114 Pilin (bacterial filament) JHS83_12490 PF00437 Type II/IV secretion system protein JHS83_12490 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JHS83_12495 PF00482 Type II secretion system (T2SS), protein F JHS83_12500 PF06750 Bacterial Peptidase A24 N-terminal domain JHS83_12500 PF01478 Type IV leader peptidase family JHS83_12505 PF01121 Dephospho-CoA kinase JHS83_12510 PF07072 Cell division protein JHS83_12515 PF03884 DNA gyrase inhibitor YacG JHS83_12520 PF01245 Ribosomal protein L19 JHS83_12525 PF01746 tRNA (Guanine-1)-methyltransferase JHS83_12530 PF05239 PRC-barrel domain JHS83_12530 PF01782 RimM N-terminal domain JHS83_12535 PF00886 Ribosomal protein S16 JHS83_12540 PF00448 SRP54-type protein, GTPase domain JHS83_12540 PF02881 SRP54-type protein, helical bundle domain JHS83_12540 PF02978 Signal peptide binding domain JHS83_12545 PF01578 Cytochrome C assembly protein JHS83_12550 PF01595 Cyclin M transmembrane N-terminal domain JHS83_12550 PF00571 CBS domain JHS83_12550 PF03471 Transporter associated domain JHS83_12555 PF02664 S-Ribosylhomocysteinase (LuxS) JHS83_12565 PF04262 Glutamate-cysteine ligase JHS83_12570 PF05193 Peptidase M16 inactive domain JHS83_12570 PF00675 Insulinase (Peptidase family M16) JHS83_12575 PF09335 SNARE associated Golgi protein JHS83_12580 PF08240 Alcohol dehydrogenase GroES-like domain JHS83_12580 PF00107 Zinc-binding dehydrogenase JHS83_12585 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit JHS83_12590 PF00364 Biotin-requiring enzyme JHS83_12590 PF00682 HMGL-like JHS83_12590 PF02436 Conserved carboxylase domain JHS83_12595 PF04277 Oxaloacetate decarboxylase, gamma chain JHS83_12650 PF02599 Global regulator protein family JHS83_12655 PF00696 Amino acid kinase family JHS83_12655 PF01842 ACT domain JHS83_12655 PF13840 ACT domain JHS83_12660 PF02272 DHHA1 domain JHS83_12660 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JHS83_12660 PF01411 tRNA synthetases class II (A) JHS83_12665 PF02631 RecX family JHS83_12670 PF00154 recA bacterial DNA recombination protein JHS83_12675 PF02464 Competence-damaged protein JHS83_12680 PF01624 MutS domain I JHS83_12680 PF05188 MutS domain II JHS83_12680 PF05192 MutS domain III JHS83_12680 PF05190 MutS family domain IV JHS83_12680 PF00488 MutS domain V JHS83_12685 PF00140 Sigma-70 factor, region 1.2 JHS83_12685 PF04542 Sigma-70 region 2 JHS83_12685 PF04539 Sigma-70 region 3 JHS83_12685 PF04545 Sigma-70, region 4 JHS83_12690 PF01476 LysM domain JHS83_12690 PF01551 Peptidase family M23 JHS83_12700 PF01975 Survival protein SurE JHS83_12705 PF01142 tRNA pseudouridine synthase D (TruD) JHS83_12710 PF02542 YgbB family JHS83_12715 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase JHS83_12720 PF04977 Septum formation initiator JHS83_12725 PF00113 Enolase, C-terminal TIM barrel domain JHS83_12725 PF03952 Enolase, N-terminal domain JHS83_12730 PF06418 CTP synthase N-terminus JHS83_12730 PF00117 Glutamine amidotransferase class-I JHS83_12735 PF03819 MazG nucleotide pyrophosphohydrolase domain JHS83_12740 PF13291 ACT domain JHS83_12740 PF04607 Region found in RelA / SpoT proteins JHS83_12740 PF02824 TGS domain JHS83_12745 PF05958 tRNA (Uracil-5-)-methyltransferase JHS83_12745 PF01938 TRAM domain JHS83_12750 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JHS83_12750 PF00072 Response regulator receiver domain JHS83_12750 PF00512 His Kinase A (phospho-acceptor) domain JHS83_12750 PF01627 Hpt domain JHS83_12750 PF00672 HAMP domain JHS83_12750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_12755 PF01648 4'-phosphopantetheinyl transferase superfamily JHS83_12760 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ JHS83_12765 PF02565 Recombination protein O C terminal JHS83_12765 PF11967 Recombination protein O N terminal JHS83_12770 PF07650 KH domain JHS83_12770 PF01926 50S ribosome-binding GTPase JHS83_12775 PF14622 Ribonuclease-III-like JHS83_12775 PF00035 Double-stranded RNA binding motif JHS83_12780 PF10502 Signal peptidase, peptidase S26 JHS83_12785 PF06421 GTP-binding protein LepA C-terminus JHS83_12785 PF03144 Elongation factor Tu domain 2 JHS83_12785 PF00009 Elongation factor Tu GTP binding domain JHS83_12785 PF00679 Elongation factor G C-terminus JHS83_12795 PF03888 MucB/RseB N-terminal domain JHS83_12795 PF17188 MucB/RseB C-terminal domain JHS83_12800 PF03872 Anti sigma-E protein RseA, N-terminal domain JHS83_12800 PF03873 Anti sigma-E protein RseA, C-terminal domain JHS83_12805 PF04542 Sigma-70 region 2 JHS83_12805 PF08281 Sigma-70, region 4 JHS83_12810 PF02910 Fumarate reductase flavoprotein C-term JHS83_12810 PF00890 FAD binding domain JHS83_12815 PF03937 Flavinator of succinate dehydrogenase JHS83_12820 PF01571 Aminomethyltransferase folate-binding domain JHS83_12835 PF01494 FAD binding domain JHS83_12840 PF01494 FAD binding domain JHS83_12845 PF03695 Uncharacterised protein family (UPF0149) JHS83_12850 PF05164 Cell division protein ZapA JHS83_12860 PF01812 5-formyltetrahydrofolate cyclo-ligase family JHS83_12865 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) JHS83_12870 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JHS83_12870 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JHS83_12870 PF01842 ACT domain JHS83_12875 PF04402 Protein of unknown function (DUF541) JHS83_12880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_12880 PF03466 LysR substrate binding domain JHS83_12885 PF01810 LysE type translocator JHS83_12890 PF04073 Aminoacyl-tRNA editing domain JHS83_12895 PF00924 Mechanosensitive ion channel JHS83_12895 PF05552 Conserved TM helix JHS83_12900 PF01116 Fructose-bisphosphate aldolase class-II JHS83_12905 PF00162 Phosphoglycerate kinase JHS83_12910 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JHS83_12910 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JHS83_12915 PF07715 TonB-dependent Receptor Plug Domain JHS83_12915 PF00593 TonB dependent receptor JHS83_12920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_12920 PF03466 LysR substrate binding domain JHS83_12925 PF02780 Transketolase, C-terminal domain JHS83_12925 PF02779 Transketolase, pyrimidine binding domain JHS83_12925 PF00456 Transketolase, thiamine diphosphate binding domain JHS83_12930 PF00438 S-adenosylmethionine synthetase, N-terminal domain JHS83_12930 PF02772 S-adenosylmethionine synthetase, central domain JHS83_12930 PF02773 S-adenosylmethionine synthetase, C-terminal domain JHS83_12940 PF17283 SprT-like zinc ribbon domain JHS83_12940 PF10263 SprT-like family JHS83_12945 PF04231 Endonuclease I JHS83_12950 PF04452 RNA methyltransferase JHS83_12955 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain JHS83_12955 PF02951 Prokaryotic glutathione synthetase, N-terminal domain JHS83_12960 PF02622 Uncharacterized ACR, COG1678 JHS83_12965 PF03652 Holliday junction resolvase JHS83_12970 PF00437 Type II/IV secretion system protein JHS83_12975 PF00437 Type II/IV secretion system protein JHS83_12980 PF01168 Alanine racemase, N-terminal domain JHS83_12985 PF14748 Pyrroline-5-carboxylate reductase dimerisation JHS83_12985 PF03807 NADP oxidoreductase coenzyme F420-dependent JHS83_12990 PF02325 YGGT family JHS83_12995 PF02594 Uncharacterised ACR, YggU family COG1872 JHS83_13005 PF01725 Ham1 family JHS83_13010 PF06969 HemN C-terminal domain JHS83_13010 PF04055 Radical SAM superfamily JHS83_13015 PF04960 Glutaminase JHS83_13020 PF02086 D12 class N6 adenine-specific DNA methyltransferase JHS83_13025 PF02390 Putative methyltransferase JHS83_13030 PF14815 NUDIX domain JHS83_13030 PF00633 Helix-hairpin-helix motif JHS83_13030 PF00730 HhH-GPD superfamily base excision DNA repair protein JHS83_13035 PF04362 Bacterial Fe(2+) trafficking JHS83_13040 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain JHS83_13040 PF01464 Transglycosylase SLT domain JHS83_13080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS83_13080 PF17200 Single Cache domain 2 JHS83_13080 PF00672 HAMP domain JHS83_13110 PF00171 Aldehyde dehydrogenase family JHS83_13155 PF00072 Response regulator receiver domain JHS83_13160 PF00356 Bacterial regulatory proteins, lacI family JHS83_13160 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JHS83_13165 PF04794 YdjC-like protein JHS83_13170 PF02056 Family 4 glycosyl hydrolase JHS83_13170 PF11975 Family 4 glycosyl hydrolase C-terminal domain JHS83_13175 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit JHS83_13180 PF02378 Phosphotransferase system, EIIC JHS83_13185 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JHS83_13190 PF01522 Polysaccharide deacetylase JHS83_13200 PF00106 short chain dehydrogenase JHS83_13205 PF10011 Predicted membrane protein (DUF2254) JHS83_13215 PF03739 Lipopolysaccharide export system permease LptF/LptG JHS83_13220 PF03739 Lipopolysaccharide export system permease LptF/LptG JHS83_13225 PF00883 Cytosol aminopeptidase family, catalytic domain JHS83_13225 PF02789 Cytosol aminopeptidase family, N-terminal domain JHS83_13230 PF04364 DNA polymerase III chi subunit, HolC JHS83_13235 PF08264 Anticodon-binding domain of tRNA JHS83_13235 PF00133 tRNA synthetases class I (I, L, M and V) JHS83_13235 PF10458 Valyl tRNA synthetase tRNA binding arm JHS83_13245 PF00583 Acetyltransferase (GNAT) family JHS83_13255 PF06877 Regulator of ribonuclease activity B JHS83_13265 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JHS83_13265 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JHS83_13275 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JHS83_13275 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JHS83_13280 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain JHS83_13280 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain JHS83_13285 PF01042 Endoribonuclease L-PSP JHS83_13290 PF01553 Acyltransferase JHS83_13295 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JHS83_13300 PF01722 BolA-like protein JHS83_13310 PF05494 MlaC protein JHS83_13315 PF02470 MlaD protein JHS83_13320 PF02405 Permease MlaE JHS83_13325 PF00005 ABC transporter JHS83_13330 PF01699 Sodium/calcium exchanger protein JHS83_13335 PF01380 SIS domain JHS83_13335 PF00571 CBS domain JHS83_13345 PF03968 OstA-like protein JHS83_13350 PF00005 ABC transporter JHS83_13350 PF12399 Branched-chain amino acid ATP-binding cassette transporter JHS83_13355 PF00309 Sigma-54 factor, Activator interacting domain (AID) JHS83_13355 PF04963 Sigma-54 factor, core binding domain JHS83_13355 PF04552 Sigma-54, DNA binding domain JHS83_13360 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JHS83_13365 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JHS83_13370 PF03668 P-loop ATPase protein family JHS83_13375 PF00381 PTS HPr component phosphorylation site JHS83_13380 PF01769 Divalent cation transporter JHS83_13380 PF03448 MgtE intracellular N domain JHS83_13380 PF00571 CBS domain JHS83_13385 PF01523 Putative modulator of DNA gyrase JHS83_13390 PF04751 Protein of unknown function (DUF615) JHS83_13395 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JHS83_13395 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JHS83_13400 PF00849 RNA pseudouridylate synthase JHS83_13410 PF00176 SNF2 family N-terminal domain JHS83_13410 PF12137 RNA polymerase recycling family C-terminal JHS83_13410 PF18339 RapA N-terminal Tudor like domain 1 JHS83_13410 PF18337 RapA N-terminal Tudor like domain JHS83_13410 PF00271 Helicase conserved C-terminal domain JHS83_13415 PF13638 PIN domain JHS83_13415 PF02562 PhoH-like protein JHS83_13420 PF01523 Putative modulator of DNA gyrase JHS83_13425 PF00795 Carbon-nitrogen hydrolase JHS83_13430 PF13502 AsmA-like C-terminal region JHS83_13430 PF13116 Protein of unknown function JHS83_13435 PF10150 Ribonuclease E/G family JHS83_13435 PF00575 S1 RNA binding domain JHS83_13440 PF02545 Maf-like protein JHS83_13445 PF04093 rod shape-determining protein MreD JHS83_13450 PF04085 rod shape-determining protein MreC JHS83_13490 PF07963 Prokaryotic N-terminal methylation motif JHS83_13500 PF00482 Type II secretion system (T2SS), protein F JHS83_13505 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JHS83_13505 PF00437 Type II/IV secretion system protein JHS83_13515 PF13401 AAA domain JHS83_13515 PF01471 Putative peptidoglycan binding domain JHS83_13520 PF11741 AMIN domain JHS83_13520 PF00263 Bacterial type II and III secretion system protein JHS83_13520 PF03958 Bacterial type II/III secretion system short domain JHS83_13520 PF07660 Secretin and TonB N terminus short domain JHS83_13540 PF00990 Diguanylate cyclase, GGDEF domain JHS83_13540 PF00563 EAL domain JHS83_13540 PF17157 Gammaproteobacterial periplasmic sensor domain JHS83_13545 PF00436 Single-strand binding protein family JHS83_13550 PF00196 Bacterial regulatory proteins, luxR family JHS83_13555 PF00483 Nucleotidyl transferase JHS83_13560 PF17760 UvrA interaction domain JHS83_13560 PF17755 UvrA DNA-binding domain JHS83_13560 PF00005 ABC transporter JHS83_13570 PF00266 Aminotransferase class-V JHS83_13575 PF00696 Amino acid kinase family JHS83_13575 PF01842 ACT domain JHS83_13580 PF02607 B12 binding domain JHS83_13580 PF02574 Homocysteine S-methyltransferase JHS83_13580 PF02310 B12 binding domain JHS83_13580 PF00809 Pterin binding enzyme JHS83_13580 PF02965 Vitamin B12 dependent methionine synthase, activation domain JHS83_13585 PF00999 Sodium/hydrogen exchanger family JHS83_13595 PF13358 DDE superfamily endonuclease JHS83_13650 PF01507 Phosphoadenosine phosphosulfate reductase family JHS83_13655 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JHS83_13655 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JHS83_13660 PF00175 Oxidoreductase NAD-binding domain JHS83_13660 PF00258 Flavodoxin JHS83_13660 PF00667 FAD binding domain JHS83_13680 PF01207 Dihydrouridine synthase (Dus) JHS83_13685 PF01475 Ferric uptake regulator family JHS83_13695 PF00342 Phosphoglucose isomerase JHS83_13700 PF01894 Uncharacterised protein family UPF0047 JHS83_13710 PF00842 Alanine racemase, C-terminal domain JHS83_13710 PF01168 Alanine racemase, N-terminal domain JHS83_13715 PF00772 DnaB-like helicase N terminal domain JHS83_13715 PF03796 DnaB-like helicase C terminal domain JHS83_13725 PF03948 Ribosomal protein L9, C-terminal domain JHS83_13725 PF01281 Ribosomal protein L9, N-terminal domain JHS83_13730 PF01084 Ribosomal protein S18 JHS83_13735 PF00436 Single-strand binding protein family JHS83_13740 PF01250 Ribosomal protein S6 JHS83_13745 PF00834 Ribulose-phosphate 3 epimerase family JHS83_13750 PF02086 D12 class N6 adenine-specific DNA methyltransferase JHS83_13760 PF01761 3-dehydroquinate synthase JHS83_13765 PF01202 Shikimate kinase JHS83_13770 PF07660 Secretin and TonB N terminus short domain JHS83_13770 PF11741 AMIN domain JHS83_13770 PF00263 Bacterial type II and III secretion system protein JHS83_13770 PF03958 Bacterial type II/III secretion system short domain JHS83_13775 PF04351 Pilus assembly protein, PilP JHS83_13785 PF05137 Fimbrial assembly protein (PilN) JHS83_13795 PF17092 Penicillin-binding protein OB-like domain JHS83_13795 PF00912 Transglycosylase JHS83_13795 PF00905 Penicillin binding protein transpeptidase domain JHS83_13800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_13800 PF03466 LysR substrate binding domain JHS83_13805 PF00462 Glutaredoxin JHS83_13805 PF08534 Redoxin JHS83_13815 PF00583 Acetyltransferase (GNAT) family JHS83_13815 PF14698 Argininosuccinate lyase C-terminal JHS83_13815 PF00206 Lyase JHS83_13820 PF00764 Arginosuccinate synthase JHS83_13825 PF00696 Amino acid kinase family JHS83_13830 PF01118 Semialdehyde dehydrogenase, NAD binding domain JHS83_13830 PF02774 Semialdehyde dehydrogenase, dimerisation domain JHS83_13835 PF01546 Peptidase family M20/M25/M40 JHS83_13835 PF07687 Peptidase dimerisation domain JHS83_13840 PF00311 Phosphoenolpyruvate carboxylase JHS83_13850 PF02219 Methylenetetrahydrofolate reductase JHS83_13855 PF03447 Homoserine dehydrogenase, NAD binding domain JHS83_13855 PF00742 Homoserine dehydrogenase JHS83_13855 PF00696 Amino acid kinase family JHS83_13860 PF01053 Cys/Met metabolism PLP-dependent enzyme JHS83_13865 PF01340 Met Apo-repressor, MetJ JHS83_13870 PF00390 Malic enzyme, N-terminal domain JHS83_13870 PF03949 Malic enzyme, NAD binding domain JHS83_13875 PF00210 Ferritin-like domain JHS83_13880 PF04324 BFD-like [2Fe-2S] binding domain JHS83_13885 PF00009 Elongation factor Tu GTP binding domain JHS83_13885 PF03144 Elongation factor Tu domain 2 JHS83_13885 PF03143 Elongation factor Tu C-terminal domain JHS83_13890 PF03144 Elongation factor Tu domain 2 JHS83_13890 PF00009 Elongation factor Tu GTP binding domain JHS83_13890 PF03764 Elongation factor G, domain IV JHS83_13890 PF00679 Elongation factor G C-terminus JHS83_13890 PF14492 Elongation Factor G, domain II JHS83_13895 PF00177 Ribosomal protein S7p/S5e JHS83_13900 PF00164 Ribosomal protein S12/S23 JHS83_13905 PF04077 DsrH like protein JHS83_13910 PF02635 DsrE/DsrF-like family JHS83_13915 PF02635 DsrE/DsrF-like family JHS83_13920 PF08348 YheO-like PAS domain JHS83_13920 PF13309 HTH domain JHS83_13925 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JHS83_13925 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JHS83_13935 PF04102 SlyX JHS83_13940 PF01112 Asparaginase JHS83_13945 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JHS83_13955 PF00999 Sodium/hydrogen exchanger family JHS83_13955 PF02254 TrkA-N domain JHS83_13960 PF02525 Flavodoxin-like fold JHS83_13965 PF00005 ABC transporter JHS83_13965 PF12848 ABC transporter JHS83_13975 PF00561 alpha/beta hydrolase fold JHS83_13980 PF06794 Uncharacterised protein family (UPF0270) JHS83_13985 PF00485 Phosphoribulokinase / Uridine kinase family JHS83_13990 PF13545 Crp-like helix-turn-helix domain JHS83_13990 PF00027 Cyclic nucleotide-binding domain JHS83_14000 PF00171 Aldehyde dehydrogenase family JHS83_14005 PF04958 Arginine N-succinyltransferase beta subunit JHS83_14010 PF00202 Aminotransferase class-III JHS83_14015 PF00117 Glutamine amidotransferase class-I JHS83_14030 PF00579 tRNA synthetases class I (W and Y) JHS83_14035 PF13419 Haloacid dehalogenase-like hydrolase JHS83_14040 PF00588 SpoU rRNA Methylase family JHS83_14040 PF08032 RNA 2'-O ribose methyltransferase substrate binding JHS83_14045 PF08206 Ribonuclease B OB domain JHS83_14045 PF08461 Ribonuclease R winged-helix domain JHS83_14045 PF00773 RNB domain JHS83_14045 PF17876 Cold shock domain JHS83_14045 PF00575 S1 RNA binding domain JHS83_14050 PF02082 Transcriptional regulator JHS83_14055 PF00970 Oxidoreductase FAD-binding domain JHS83_14055 PF00175 Oxidoreductase NAD-binding domain JHS83_14055 PF00042 Globin JHS83_14060 PF08238 Sel1 repeat JHS83_14065 PF00709 Adenylosuccinate synthetase JHS83_14070 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) JHS83_14075 PF01145 SPFH domain / Band 7 family JHS83_14080 PF01145 SPFH domain / Band 7 family JHS83_14080 PF12221 Bacterial membrane protein N terminal JHS83_14085 PF16360 GTP-binding GTPase Middle Region JHS83_14085 PF13167 GTP-binding GTPase N-terminal JHS83_14085 PF01926 50S ribosome-binding GTPase JHS83_14090 PF17209 Hfq protein JHS83_14100 PF08676 MutL C terminal dimerisation domain JHS83_14100 PF01119 DNA mismatch repair protein, C-terminal domain JHS83_14105 PF01520 N-acetylmuramoyl-L-alanine amidase JHS83_14110 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE JHS83_14115 PF08331 Domain of unknown function (DUF1730) JHS83_14185 PF00929 Exonuclease JHS83_14190 PF03193 RsgA GTPase JHS83_14195 PF02666 Phosphatidylserine decarboxylase JHS83_14200 PF00939 Sodium:sulfate symporter transmembrane region JHS83_14205 PF02796 Helix-turn-helix domain of resolvase JHS83_14205 PF00239 Resolvase, N terminal domain JHS83_14245 PF06415 BPG-independent PGAM N-terminus (iPGM_N) JHS83_14245 PF01676 Metalloenzyme superfamily JHS83_14250 PF00581 Rhodanese-like domain JHS83_14255 PF02556 Preprotein translocase subunit SecB JHS83_14260 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JHS83_14260 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JHS83_14265 PF06426 Serine acetyltransferase, N-terminal JHS83_14265 PF00132 Bacterial transferase hexapeptide (six repeats) JHS83_14270 PF01551 Peptidase family M23 JHS83_14280 PF00440 Bacterial regulatory proteins, tetR family JHS83_14280 PF08360 QacR-like protein, C-terminal region JHS83_14290 PF00152 tRNA synthetases class II (D, K and N) JHS83_14295 PF02910 Fumarate reductase flavoprotein C-term JHS83_14295 PF00890 FAD binding domain JHS83_14300 PF13085 2Fe-2S iron-sulfur cluster binding domain JHS83_14300 PF13183 4Fe-4S dicluster domain JHS83_14305 PF02300 Fumarate reductase subunit C JHS83_14310 PF02313 Fumarate reductase subunit D JHS83_14320 PF08207 Elongation factor P (EF-P) KOW-like domain JHS83_14320 PF01132 Elongation factor P (EF-P) OB domain JHS83_14320 PF09285 Elongation factor P, C-terminal JHS83_14325 PF04055 Radical SAM superfamily JHS83_14330 PF00842 Alanine racemase, C-terminal domain JHS83_14330 PF01168 Alanine racemase, N-terminal domain JHS83_14335 PF02308 MgtC family JHS83_14345 PF00118 TCP-1/cpn60 chaperonin family JHS83_14350 PF00166 Chaperonin 10 Kd subunit JHS83_14355 PF01554 MatE JHS83_14360 PF00365 Phosphofructokinase JHS83_14365 PF16916 Dimerisation domain of Zinc Transporter JHS83_14365 PF01545 Cation efflux family JHS83_14370 PF07813 LTXXQ motif family protein JHS83_14375 PF00486 Transcriptional regulatory protein, C terminal JHS83_14375 PF00072 Response regulator receiver domain JHS83_14380 PF16527 Two-component sensor protein CpxA, periplasmic domain JHS83_14380 PF00672 HAMP domain JHS83_14380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_14380 PF00512 His Kinase A (phospho-acceptor) domain JHS83_14385 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JHS83_14385 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JHS83_14390 PF00588 SpoU rRNA Methylase family JHS83_14395 PF04186 FxsA cytoplasmic membrane protein JHS83_14400 PF10415 Fumarase C C-terminus JHS83_14400 PF00206 Lyase JHS83_14405 PF03605 Anaerobic c4-dicarboxylate membrane transporter JHS83_14410 PF02683 Cytochrome C biogenesis protein transmembrane region JHS83_14410 PF11412 Disulphide bond corrector protein DsbC JHS83_14415 PF00196 Bacterial regulatory proteins, luxR family JHS83_14415 PF00072 Response regulator receiver domain JHS83_14420 PF03471 Transporter associated domain JHS83_14420 PF00999 Sodium/hydrogen exchanger family JHS83_14420 PF02080 TrkA-C domain JHS83_14430 PF00474 Sodium:solute symporter family JHS83_14445 PF00206 Lyase JHS83_14445 PF10415 Fumarase C C-terminus JHS83_14450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_14450 PF00512 His Kinase A (phospho-acceptor) domain JHS83_14450 PF09308 LuxQ, periplasmic JHS83_14450 PF00072 Response regulator receiver domain JHS83_14455 PF12832 MFS_1 like family JHS83_14470 PF16177 Acetyl-coenzyme A synthetase N-terminus JHS83_14470 PF00501 AMP-binding enzyme JHS83_14470 PF13193 AMP-binding enzyme C-terminal domain JHS83_14475 PF01220 Dehydroquinase class II JHS83_14480 PF00364 Biotin-requiring enzyme JHS83_14485 PF02785 Biotin carboxylase C-terminal domain JHS83_14485 PF00289 Biotin carboxylase, N-terminal domain JHS83_14485 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JHS83_14495 PF01207 Dihydrouridine synthase (Dus) JHS83_14500 PF02954 Bacterial regulatory protein, Fis family JHS83_14505 PF07690 Major Facilitator Superfamily JHS83_14510 PF00005 ABC transporter JHS83_14510 PF12848 ABC transporter JHS83_14515 PF00990 Diguanylate cyclase, GGDEF domain JHS83_14515 PF05230 MASE2 domain JHS83_14585 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain JHS83_14585 PF01276 Orn/Lys/Arg decarboxylase, major domain JHS83_14585 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain JHS83_14590 PF13520 Amino acid permease JHS83_14595 PF18500 CadC C-terminal domain 1 JHS83_14595 PF00486 Transcriptional regulatory protein, C terminal JHS83_14600 PF13411 MerR HTH family regulatory protein JHS83_14605 PF02142 MGS-like domain JHS83_14605 PF01808 AICARFT/IMPCHase bienzyme JHS83_14610 PF02843 Phosphoribosylglycinamide synthetase, C domain JHS83_14610 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain JHS83_14610 PF02844 Phosphoribosylglycinamide synthetase, N domain JHS83_14620 PF00216 Bacterial DNA-binding protein JHS83_14625 PF01595 Cyclin M transmembrane N-terminal domain JHS83_14625 PF00571 CBS domain JHS83_14630 PF04222 Protein of unknown function (DUF416) JHS83_14635 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JHS83_14640 PF03167 Uracil DNA glycosylase superfamily JHS83_14645 PF01208 Uroporphyrinogen decarboxylase (URO-D) JHS83_14660 PF09297 NADH pyrophosphatase zinc ribbon domain JHS83_14660 PF00293 NUDIX domain JHS83_14665 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ JHS83_14670 PF04998 RNA polymerase Rpb1, domain 5 JHS83_14670 PF04997 RNA polymerase Rpb1, domain 1 JHS83_14670 PF00623 RNA polymerase Rpb1, domain 2 JHS83_14670 PF04983 RNA polymerase Rpb1, domain 3 JHS83_14670 PF05000 RNA polymerase Rpb1, domain 4 JHS83_14675 PF00562 RNA polymerase Rpb2, domain 6 JHS83_14675 PF04563 RNA polymerase beta subunit JHS83_14675 PF04560 RNA polymerase Rpb2, domain 7 JHS83_14675 PF04561 RNA polymerase Rpb2, domain 2 JHS83_14675 PF10385 RNA polymerase beta subunit external 1 domain JHS83_14675 PF04565 RNA polymerase Rpb2, domain 3 JHS83_14680 PF16320 Ribosomal protein L7/L12 dimerisation domain JHS83_14680 PF00542 Ribosomal protein L7/L12 C-terminal domain JHS83_14685 PF00466 Ribosomal protein L10 JHS83_14690 PF00687 Ribosomal protein L1p/L10e family JHS83_14695 PF00298 Ribosomal protein L11, RNA binding domain JHS83_14695 PF03946 Ribosomal protein L11, N-terminal domain JHS83_14700 PF02357 Transcription termination factor nusG JHS83_14700 PF00467 KOW motif JHS83_14705 PF00584 SecE/Sec61-gamma subunits of protein translocation complex JHS83_14710 PF00009 Elongation factor Tu GTP binding domain JHS83_14710 PF03143 Elongation factor Tu C-terminal domain JHS83_14710 PF03144 Elongation factor Tu domain 2 JHS83_14735 PF00485 Phosphoribulokinase / Uridine kinase family JHS83_14740 PF02237 Biotin protein ligase C terminal domain JHS83_14740 PF03099 Biotin/lipoate A/B protein ligase family JHS83_14740 PF08279 HTH domain JHS83_14745 PF01565 FAD binding domain JHS83_14745 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JHS83_14755 PF13091 PLD-like domain JHS83_14810 PF01177 Asp/Glu/Hydantoin racemase JHS83_14820 PF07715 TonB-dependent Receptor Plug Domain JHS83_14820 PF00593 TonB dependent receptor JHS83_14825 PF05958 tRNA (Uracil-5-)-methyltransferase JHS83_14835 PF00440 Bacterial regulatory proteins, tetR family JHS83_14840 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JHS83_14840 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS83_14845 PF01554 MatE JHS83_14850 PF04072 Leucine carboxyl methyltransferase JHS83_14855 PF00717 Peptidase S24-like JHS83_14855 PF01726 LexA DNA binding domain JHS83_14860 PF01553 Acyltransferase JHS83_14865 PF01040 UbiA prenyltransferase family JHS83_14870 PF04345 Chorismate lyase JHS83_14875 PF03748 Flagellar basal body-associated protein FliL JHS83_14880 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease JHS83_14880 PF01694 Rhomboid family JHS83_14885 PF00581 Rhodanese-like domain JHS83_14890 PF00140 Sigma-70 factor, region 1.2 JHS83_14890 PF04542 Sigma-70 region 2 JHS83_14890 PF04545 Sigma-70, region 4 JHS83_14895 PF18075 FtsX extracellular domain JHS83_14900 PF00005 ABC transporter JHS83_14905 PF00448 SRP54-type protein, GTPase domain JHS83_14905 PF02881 SRP54-type protein, helical bundle domain JHS83_14920 PF01914 MarC family integral membrane protein JHS83_14965 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JHS83_14965 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JHS83_14970 PF01022 Bacterial regulatory protein, arsR family JHS83_14975 PF08668 HDOD domain JHS83_14975 PF00563 EAL domain JHS83_14980 PF01810 LysE type translocator JHS83_14985 PF12146 Serine aminopeptidase, S33 JHS83_15005 PF03942 DTW domain JHS83_15010 PF08495 FIST N domain JHS83_15010 PF00563 EAL domain JHS83_15010 PF00990 Diguanylate cyclase, GGDEF domain JHS83_15010 PF10442 FIST C domain JHS83_15015 PF13419 Haloacid dehalogenase-like hydrolase JHS83_15020 PF00589 Phage integrase family JHS83_15020 PF02899 Phage integrase, N-terminal SAM-like domain JHS83_15030 PF01678 Diaminopimelate epimerase JHS83_15035 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JHS83_15035 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JHS83_15045 PF01491 Frataxin-like domain JHS83_15050 PF01295 Adenylate cyclase, class-I JHS83_15050 PF12633 Adenylate cyclase NT domain JHS83_15055 PF03900 Porphobilinogen deaminase, C-terminal domain JHS83_15055 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain JHS83_15060 PF02602 Uroporphyrinogen-III synthase HemD JHS83_15065 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase JHS83_15070 PF07219 HemY protein N-terminus JHS83_15110 PF00175 Oxidoreductase NAD-binding domain JHS83_15115 PF00111 2Fe-2S iron-sulfur cluster binding domain JHS83_15120 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase JHS83_15130 PF07498 Rho termination factor, N-terminal domain JHS83_15130 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JHS83_15130 PF07497 Rho termination factor, RNA-binding domain JHS83_15135 PF00085 Thioredoxin JHS83_15140 PF00270 DEAD/DEAH box helicase JHS83_15140 PF00271 Helicase conserved C-terminal domain JHS83_15145 PF02541 Ppx/GppA phosphatase family JHS83_15150 PF02592 Putative vitamin uptake transporter JHS83_15160 PF00570 HRDC domain JHS83_15160 PF00270 DEAD/DEAH box helicase JHS83_15160 PF00271 Helicase conserved C-terminal domain JHS83_15160 PF16124 RecQ zinc-binding JHS83_15160 PF09382 RQC domain JHS83_15195 PF12008 Type I restriction and modification enzyme - subunit R C terminal JHS83_15195 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) JHS83_15195 PF18766 SWI2/SNF2 ATPase JHS83_15205 PF01420 Type I restriction modification DNA specificity domain JHS83_15210 PF12161 HsdM N-terminal domain JHS83_15210 PF02384 N-6 DNA Methylase JHS83_15225 PF00892 EamA-like transporter family JHS83_15260 PF13737 Transposase DDE domain JHS83_15285 PF01810 LysE type translocator JHS83_15295 PF13361 UvrD-like helicase C-terminal domain JHS83_15295 PF00580 UvrD/REP helicase N-terminal domain JHS83_15305 PF05114 Protein of unknown function (DUF692) JHS83_15325 PF07690 Major Facilitator Superfamily JHS83_15330 PF03466 LysR substrate binding domain JHS83_15330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_15335 PF00557 Metallopeptidase family M24 JHS83_15335 PF01321 Creatinase/Prolidase N-terminal domain JHS83_15335 PF00557 Metallopeptidase family M24 JHS83_15335 PF01321 Creatinase/Prolidase N-terminal domain JHS83_15340 PF06968 Biotin and Thiamin Synthesis associated domain JHS83_15340 PF04055 Radical SAM superfamily JHS83_15345 PF05690 Thiazole biosynthesis protein ThiG JHS83_15350 PF02597 ThiS family JHS83_15355 PF00899 ThiF family JHS83_15360 PF02581 Thiamine monophosphate synthase JHS83_15365 PF01964 Radical SAM ThiC family JHS83_15365 PF13667 ThiC-associated domain JHS83_15370 PF02537 CrcB-like protein, Camphor Resistance (CrcB) JHS83_15425 PF00132 Bacterial transferase hexapeptide (six repeats) JHS83_15430 PF07369 Protein of unknown function (DUF1488) JHS83_15435 PF08501 Shikimate dehydrogenase substrate binding domain JHS83_15435 PF18317 Shikimate 5'-dehydrogenase C-terminal domain JHS83_15435 PF01488 Shikimate / quinate 5-dehydrogenase JHS83_15440 PF01218 Coproporphyrinogen III oxidase JHS83_15445 PF01300 Telomere recombination JHS83_15450 PF00731 AIR carboxylase JHS83_15455 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain JHS83_15455 PF02222 ATP-grasp domain JHS83_15460 PF01396 Topoisomerase DNA binding C4 zinc finger JHS83_15465 PF04361 Protein of unknown function (DUF494) JHS83_15470 PF17782 DprA winged helix domain JHS83_15470 PF02481 DNA recombination-mediator protein A JHS83_15480 PF01327 Polypeptide deformylase JHS83_15485 PF00551 Formyl transferase JHS83_15485 PF02911 Formyl transferase, C-terminal domain JHS83_15490 PF01029 NusB family JHS83_15490 PF01189 16S rRNA methyltransferase RsmB/F JHS83_15495 PF02254 TrkA-N domain JHS83_15495 PF02080 TrkA-C domain JHS83_15500 PF02386 Cation transport protein JHS83_15510 PF03006 Haemolysin-III related JHS83_15515 PF07070 SpoOM protein JHS83_15525 PF06288 Protein of unknown function (DUF1040) JHS83_15530 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase JHS83_15530 PF13746 4Fe-4S dicluster domain JHS83_15530 PF12801 4Fe-4S binding domain JHS83_15535 PF01636 Phosphotransferase enzyme family JHS83_15540 PF01323 DSBA-like thioredoxin domain JHS83_15545 PF01553 Acyltransferase JHS83_15555 PF01078 Magnesium chelatase, subunit ChlI JHS83_15555 PF13335 Magnesium chelatase, subunit ChlI C-terminal JHS83_15560 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JHS83_15560 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JHS83_15560 PF00205 Thiamine pyrophosphate enzyme, central domain JHS83_15570 PF01063 Amino-transferase class IV JHS83_15575 PF00920 Dehydratase family JHS83_15580 PF00585 C-terminal regulatory domain of Threonine dehydratase JHS83_15580 PF00291 Pyridoxal-phosphate dependent enzyme JHS83_15585 PF03466 LysR substrate binding domain JHS83_15585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_15590 PF07690 Major Facilitator Superfamily JHS83_15600 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_15605 PF00132 Bacterial transferase hexapeptide (six repeats) JHS83_15605 PF12804 MobA-like NTP transferase domain JHS83_15610 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain JHS83_15610 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain JHS83_15615 PF02874 ATP synthase alpha/beta family, beta-barrel domain JHS83_15615 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JHS83_15620 PF00231 ATP synthase JHS83_15625 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JHS83_15625 PF02874 ATP synthase alpha/beta family, beta-barrel domain JHS83_15625 PF00306 ATP synthase alpha/beta chain, C terminal domain JHS83_15630 PF00213 ATP synthase delta (OSCP) subunit JHS83_15635 PF00430 ATP synthase B/B' CF(0) JHS83_15640 PF00137 ATP synthase subunit C JHS83_15645 PF00119 ATP synthase A chain JHS83_15650 PF03899 ATP synthase I chain JHS83_15655 PF02195 ParB-like nuclease domain JHS83_15655 PF17762 HTH domain found in ParB protein JHS83_15660 PF13614 AAA domain JHS83_15665 PF02527 rRNA small subunit methyltransferase G JHS83_15670 PF01134 Glucose inhibited division protein A JHS83_15670 PF13932 GidA associated domain JHS83_15675 PF00258 Flavodoxin JHS83_15680 PF01926 50S ribosome-binding GTPase JHS83_15680 PF10396 GTP-binding protein TrmE N-terminus JHS83_15680 PF12631 MnmE helical domain JHS83_15685 PF14849 YidC periplasmic domain JHS83_15685 PF02096 60Kd inner membrane protein JHS83_15690 PF01809 Putative membrane protein insertion efficiency factor JHS83_15695 PF00825 Ribonuclease P JHS83_15700 PF00468 Ribosomal protein L34 JHS83_15705 PF00005 ABC transporter JHS83_15710 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_15715 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS83_15745 PF01070 FMN-dependent dehydrogenase JHS83_15755 PF03466 LysR substrate binding domain JHS83_15755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_15765 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS83_15765 PF00005 ABC transporter JHS83_15775 PF05362 Lon protease (S16) C-terminal proteolytic domain JHS83_15775 PF13654 AAA domain JHS83_15780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS83_15780 PF00672 HAMP domain JHS83_15785 PF07238 PilZ domain JHS83_15785 PF12945 Flagellar protein YcgR JHS83_15800 PF00583 Acetyltransferase (GNAT) family JHS83_15805 PF12800 4Fe-4S binding domain JHS83_15805 PF12838 4Fe-4S dicluster domain JHS83_15810 PF13237 4Fe-4S dicluster domain JHS83_15810 PF12801 4Fe-4S binding domain JHS83_15825 PF12558 ATP-binding cassette cobalt transporter JHS83_15825 PF00005 ABC transporter JHS83_15830 PF07155 ECF-type riboflavin transporter, S component JHS83_15835 PF00529 HlyD membrane-fusion protein of T1SS JHS83_15835 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS83_15840 PF11742 Protein of unknown function (DUF3302) JHS83_15845 PF00990 Diguanylate cyclase, GGDEF domain JHS83_15860 PF01048 Phosphorylase superfamily JHS83_15865 PF08349 Protein of unknown function (DUF1722) JHS83_15870 PF13411 MerR HTH family regulatory protein JHS83_15875 PF00875 DNA photolyase JHS83_15875 PF03441 FAD binding domain of DNA photolyase JHS83_15880 PF17969 L,D-transpeptidase C-terminal domain JHS83_15880 PF01476 LysM domain JHS83_15880 PF03734 L,D-transpeptidase catalytic domain JHS83_15890 PF00271 Helicase conserved C-terminal domain JHS83_15890 PF00270 DEAD/DEAH box helicase JHS83_15895 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JHS83_15895 PF00326 Prolyl oligopeptidase family JHS83_15900 PF00593 TonB dependent receptor JHS83_15900 PF07715 TonB-dependent Receptor Plug Domain JHS83_15920 PF00672 HAMP domain JHS83_15920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS83_15925 PF12849 PBP superfamily domain JHS83_15930 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_15935 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_15940 PF00005 ABC transporter JHS83_15955 PF13519 von Willebrand factor type A domain JHS83_15960 PF13519 von Willebrand factor type A domain JHS83_15970 PF01882 Protein of unknown function DUF58 JHS83_15975 PF07726 ATPase family associated with various cellular activities (AAA) JHS83_15975 PF17863 AAA lid domain JHS83_15980 PF00672 HAMP domain JHS83_15980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS83_15980 PF02743 Cache domain JHS83_15990 PF00196 Bacterial regulatory proteins, luxR family JHS83_15995 PF00196 Bacterial regulatory proteins, luxR family JHS83_16005 PF00664 ABC transporter transmembrane region JHS83_16005 PF00005 ABC transporter JHS83_16010 PF00529 HlyD membrane-fusion protein of T1SS JHS83_16025 PF13693 Winged helix-turn-helix DNA-binding JHS83_16080 PF02810 SEC-C motif JHS83_16240 PF01555 DNA methylase JHS83_16270 PF01389 OmpA-like transmembrane domain JHS83_16270 PF00691 OmpA family JHS83_16280 PF01032 FecCD transport family JHS83_16285 PF01497 Periplasmic binding protein JHS83_16290 PF00005 ABC transporter JHS83_16295 PF00593 TonB dependent receptor JHS83_16295 PF07715 TonB-dependent Receptor Plug Domain JHS83_16300 PF00664 ABC transporter transmembrane region JHS83_16300 PF00005 ABC transporter JHS83_16305 PF02702 Osmosensitive K+ channel His kinase sensor domain JHS83_16305 PF13493 Domain of unknown function (DUF4118) JHS83_16305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_16305 PF00512 His Kinase A (phospho-acceptor) domain JHS83_16305 PF02702 Osmosensitive K+ channel His kinase sensor domain JHS83_16305 PF00512 His Kinase A (phospho-acceptor) domain JHS83_16305 PF13493 Domain of unknown function (DUF4118) JHS83_16305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_16310 PF00486 Transcriptional regulatory protein, C terminal JHS83_16310 PF00072 Response regulator receiver domain JHS83_16315 PF02080 TrkA-C domain JHS83_16315 PF02254 TrkA-N domain JHS83_16320 PF02386 Cation transport protein JHS83_16325 PF03707 Bacterial signalling protein N terminal repeat JHS83_16325 PF00990 Diguanylate cyclase, GGDEF domain JHS83_16325 PF00563 EAL domain JHS83_16330 PF00127 Copper binding proteins, plastocyanin/azurin family JHS83_16335 PF13419 Haloacid dehalogenase-like hydrolase JHS83_16345 PF01238 Phosphomannose isomerase type I JHS83_16350 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JHS83_16350 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JHS83_16355 PF12833 Helix-turn-helix domain JHS83_16365 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JHS83_16375 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JHS83_16375 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JHS83_16380 PF00199 Catalase JHS83_16380 PF06628 Catalase-related immune-responsive JHS83_16385 PF13417 Glutathione S-transferase, N-terminal domain JHS83_16390 PF16884 N-terminal domain of oxidoreductase JHS83_16390 PF00107 Zinc-binding dehydrogenase JHS83_16395 PF00440 Bacterial regulatory proteins, tetR family JHS83_16395 PF16925 Tetracyclin repressor-like, C-terminal domain JHS83_16400 PF04266 ASCH domain JHS83_16430 PF13439 Glycosyltransferase Family 4 JHS83_16430 PF00534 Glycosyl transferases group 1 JHS83_16440 PF02706 Chain length determinant protein JHS83_16440 PF13614 AAA domain JHS83_16440 PF13807 G-rich domain on putative tyrosine kinase JHS83_16455 PF02397 Bacterial sugar transferase JHS83_16460 PF08402 TOBE domain JHS83_16460 PF00005 ABC transporter JHS83_16465 PF01547 Bacterial extracellular solute-binding protein JHS83_16470 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_16470 PF14785 Maltose transport system permease protein MalF P2 domain JHS83_16475 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_16530 PF01872 RibD C-terminal domain JHS83_16535 PF00440 Bacterial regulatory proteins, tetR family JHS83_16535 PF02909 Tetracyclin repressor-like, C-terminal domain JHS83_16540 PF02798 Glutathione S-transferase, N-terminal domain JHS83_16545 PF00768 D-alanyl-D-alanine carboxypeptidase JHS83_16545 PF07943 Penicillin-binding protein 5, C-terminal domain JHS83_16560 PF00462 Glutaredoxin JHS83_16560 PF08534 Redoxin JHS83_16565 PF00962 Adenosine/AMP deaminase JHS83_16580 PF00313 'Cold-shock' DNA-binding domain JHS83_16585 PF02678 Pirin JHS83_16585 PF05726 Pirin C-terminal cupin domain JHS83_16590 PF01734 Patatin-like phospholipase JHS83_16600 PF01047 MarR family JHS83_16615 PF07690 Major Facilitator Superfamily JHS83_16625 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JHS83_16630 PF08019 Phosphoethanolamine transferase EptA/EptB JHS83_16630 PF00884 Sulfatase JHS83_16635 PF01219 Prokaryotic diacylglycerol kinase JHS83_16645 PF00672 HAMP domain JHS83_16645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_16645 PF00512 His Kinase A (phospho-acceptor) domain JHS83_16650 PF00486 Transcriptional regulatory protein, C terminal JHS83_16650 PF00072 Response regulator receiver domain JHS83_16655 PF00106 short chain dehydrogenase JHS83_16670 PF01323 DSBA-like thioredoxin domain JHS83_16685 PF00255 Glutathione peroxidase JHS83_16690 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JHS83_16700 PF07690 Major Facilitator Superfamily JHS83_16710 PF01966 HD domain JHS83_16720 PF07969 Amidohydrolase family JHS83_16725 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin JHS83_16730 PF03448 MgtE intracellular N domain JHS83_16730 PF01769 Divalent cation transporter JHS83_16730 PF00571 CBS domain JHS83_16735 PF03109 ABC1 family JHS83_16740 PF00529 HlyD membrane-fusion protein of T1SS JHS83_16740 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS83_16750 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JHS83_16750 PF12833 Helix-turn-helix domain JHS83_16765 PF00072 Response regulator receiver domain JHS83_16765 PF00486 Transcriptional regulatory protein, C terminal JHS83_16770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_16770 PF16527 Two-component sensor protein CpxA, periplasmic domain JHS83_16770 PF00672 HAMP domain JHS83_16770 PF00512 His Kinase A (phospho-acceptor) domain JHS83_16780 PF00155 Aminotransferase class I and II JHS83_16780 PF00392 Bacterial regulatory proteins, gntR family JHS83_16785 PF13520 Amino acid permease JHS83_16790 PF13404 AsnC-type helix-turn-helix domain JHS83_16790 PF01037 Lrp/AsnC ligand binding domain JHS83_16795 PF03466 LysR substrate binding domain JHS83_16795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_16815 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JHS83_16815 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JHS83_16820 PF00672 HAMP domain JHS83_16820 PF00512 His Kinase A (phospho-acceptor) domain JHS83_16820 PF01627 Hpt domain JHS83_16820 PF00072 Response regulator receiver domain JHS83_16820 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JHS83_16820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_16825 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JHS83_16830 PF01554 MatE JHS83_16835 PF04363 Protein of unknown function (DUF496) JHS83_16845 PF04337 Protein of unknown function, DUF480 JHS83_16850 PF01541 GIY-YIG catalytic domain JHS83_16855 PF13407 Periplasmic binding protein domain JHS83_16860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_16860 PF00072 Response regulator receiver domain JHS83_16860 PF00512 His Kinase A (phospho-acceptor) domain JHS83_16860 PF09308 LuxQ, periplasmic JHS83_16870 PF00529 HlyD membrane-fusion protein of T1SS JHS83_16870 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS83_16890 PF01037 Lrp/AsnC ligand binding domain JHS83_16915 PF13721 SecD export protein N-terminal TM region JHS83_16915 PF02355 Protein export membrane protein JHS83_16915 PF07549 SecD/SecF GG Motif JHS83_16920 PF07549 SecD/SecF GG Motif JHS83_16920 PF02355 Protein export membrane protein JHS83_16935 PF00106 short chain dehydrogenase JHS83_16940 PF02803 Thiolase, C-terminal domain JHS83_16940 PF00108 Thiolase, N-terminal domain JHS83_16950 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus JHS83_16950 PF00561 alpha/beta hydrolase fold JHS83_16960 PF03264 NapC/NirT cytochrome c family, N-terminal region JHS83_16965 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) JHS83_16970 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JHS83_16970 PF00384 Molybdopterin oxidoreductase JHS83_16970 PF01568 Molydopterin dinucleotide binding domain JHS83_16980 PF13187 4Fe-4S dicluster domain JHS83_16980 PF12838 4Fe-4S dicluster domain JHS83_16985 PF07730 Histidine kinase JHS83_16985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_16985 PF00672 HAMP domain JHS83_16985 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term JHS83_16990 PF00196 Bacterial regulatory proteins, luxR family JHS83_16990 PF00072 Response regulator receiver domain JHS83_17005 PF07687 Peptidase dimerisation domain JHS83_17005 PF01546 Peptidase family M20/M25/M40 JHS83_17010 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JHS83_17015 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS83_17020 PF00873 AcrB/AcrD/AcrF family JHS83_17025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS83_17025 PF00672 HAMP domain JHS83_17025 PF12729 Four helix bundle sensory module for signal transduction JHS83_17030 PF00472 RF-1 domain JHS83_17035 PF13419 Haloacid dehalogenase-like hydrolase JHS83_17040 PF00691 OmpA family JHS83_17040 PF01389 OmpA-like transmembrane domain JHS83_17045 PF00793 DAHP synthetase I family JHS83_17050 PF07690 Major Facilitator Superfamily JHS83_17055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS83_17055 PF08447 PAS fold JHS83_17060 PF02779 Transketolase, pyrimidine binding domain JHS83_17060 PF02780 Transketolase, C-terminal domain JHS83_17060 PF00456 Transketolase, thiamine diphosphate binding domain JHS83_17065 PF00923 Transaldolase/Fructose-6-phosphate aldolase JHS83_17075 PF08329 Chitinase A, N-terminal domain JHS83_17075 PF00704 Glycosyl hydrolases family 18 JHS83_17080 PF03707 Bacterial signalling protein N terminal repeat JHS83_17080 PF00563 EAL domain JHS83_17080 PF00990 Diguanylate cyclase, GGDEF domain JHS83_17085 PF00581 Rhodanese-like domain JHS83_17100 PF00899 ThiF family JHS83_17105 PF03453 MoeA N-terminal region (domain I and II) JHS83_17105 PF03454 MoeA C-terminal region (domain IV) JHS83_17105 PF00994 Probable molybdopterin binding domain JHS83_17110 PF01227 GTP cyclohydrolase I JHS83_17115 PF01566 Natural resistance-associated macrophage protein JHS83_17125 PF00654 Voltage gated chloride channel JHS83_17140 PF00248 Aldo/keto reductase family JHS83_17145 PF00072 Response regulator receiver domain JHS83_17155 PF01256 Carbohydrate kinase JHS83_17155 PF03853 YjeF-related protein N-terminus JHS83_17160 PF00478 IMP dehydrogenase / GMP reductase domain JHS83_17165 PF00501 AMP-binding enzyme JHS83_17165 PF13193 AMP-binding enzyme C-terminal domain JHS83_17170 PF01012 Electron transfer flavoprotein domain JHS83_17170 PF00766 Electron transfer flavoprotein FAD-binding domain JHS83_17175 PF01012 Electron transfer flavoprotein domain JHS83_17185 PF00005 ABC transporter JHS83_17185 PF12399 Branched-chain amino acid ATP-binding cassette transporter JHS83_17210 PF00005 ABC transporter JHS83_17215 PF00501 AMP-binding enzyme JHS83_17215 PF14535 AMP-binding enzyme C-terminal domain JHS83_17220 PF05724 Thiopurine S-methyltransferase (TPMT) JHS83_17225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_17225 PF03466 LysR substrate binding domain JHS83_17230 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II JHS83_17230 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg JHS83_17230 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase JHS83_17235 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JHS83_17240 PF00034 Cytochrome c JHS83_17250 PF13411 MerR HTH family regulatory protein JHS83_17255 PF02627 Carboxymuconolactone decarboxylase family JHS83_17260 PF02567 Phenazine biosynthesis-like protein JHS83_17270 PF02322 Cytochrome bd terminal oxidase subunit II JHS83_17275 PF01654 Cytochrome bd terminal oxidase subunit I JHS83_17280 PF00155 Aminotransferase class I and II JHS83_17280 PF00392 Bacterial regulatory proteins, gntR family JHS83_17285 PF12464 Maltose acetyltransferase JHS83_17285 PF14602 Hexapeptide repeat of succinyl-transferase JHS83_17290 PF12794 Mechanosensitive ion channel inner membrane domain 1 JHS83_17290 PF00924 Mechanosensitive ion channel JHS83_17290 PF12795 Mechanosensitive ion channel porin domain JHS83_17305 PF00672 HAMP domain JHS83_17305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_17305 PF00512 His Kinase A (phospho-acceptor) domain JHS83_17305 PF01627 Hpt domain JHS83_17305 PF00072 Response regulator receiver domain JHS83_17305 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JHS83_17310 PF00682 HMGL-like JHS83_17315 PF18140 Propionyl-coenzyme A carboxylase BT domain JHS83_17315 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JHS83_17315 PF00364 Biotin-requiring enzyme JHS83_17315 PF02785 Biotin carboxylase C-terminal domain JHS83_17315 PF00289 Biotin carboxylase, N-terminal domain JHS83_17320 PF00378 Enoyl-CoA hydratase/isomerase JHS83_17325 PF01039 Carboxyl transferase domain JHS83_17330 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JHS83_17330 PF02770 Acyl-CoA dehydrogenase, middle domain JHS83_17330 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JHS83_17335 PF00376 MerR family regulatory protein JHS83_17335 PF09278 MerR, DNA binding JHS83_17340 PF00108 Thiolase, N-terminal domain JHS83_17340 PF02803 Thiolase, C-terminal domain JHS83_17345 PF00171 Aldehyde dehydrogenase family JHS83_17350 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JHS83_17350 PF02770 Acyl-CoA dehydrogenase, middle domain JHS83_17350 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JHS83_17355 PF00378 Enoyl-CoA hydratase/isomerase JHS83_17365 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JHS83_17365 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JHS83_17375 PF17151 Periplasmic sensor domain JHS83_17375 PF00990 Diguanylate cyclase, GGDEF domain JHS83_17380 PF13977 BetI-type transcriptional repressor, C-terminal JHS83_17380 PF00440 Bacterial regulatory proteins, tetR family JHS83_17385 PF00171 Aldehyde dehydrogenase family JHS83_17390 PF05199 GMC oxidoreductase JHS83_17390 PF00732 GMC oxidoreductase JHS83_17395 PF04069 Substrate binding domain of ABC-type glycine betaine transport system JHS83_17400 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_17405 PF00005 ABC transporter JHS83_17405 PF00571 CBS domain JHS83_17410 PF00881 Nitroreductase family JHS83_17420 PF16200 C-terminal region of band_7 JHS83_17420 PF01145 SPFH domain / Band 7 family JHS83_17430 PF13188 PAS domain JHS83_17430 PF00563 EAL domain JHS83_17430 PF00990 Diguanylate cyclase, GGDEF domain JHS83_17430 PF03707 Bacterial signalling protein N terminal repeat JHS83_17435 PF03150 Di-haem cytochrome c peroxidase JHS83_17435 PF00034 Cytochrome c JHS83_17440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_17440 PF00512 His Kinase A (phospho-acceptor) domain JHS83_17440 PF09308 LuxQ, periplasmic JHS83_17440 PF00072 Response regulator receiver domain JHS83_17455 PF04116 Fatty acid hydroxylase superfamily JHS83_17495 PF01048 Phosphorylase superfamily JHS83_17500 PF00563 EAL domain JHS83_17500 PF00990 Diguanylate cyclase, GGDEF domain JHS83_17505 PF05025 RbsD / FucU transport protein family JHS83_17510 PF00005 ABC transporter JHS83_17515 PF02653 Branched-chain amino acid transport system / permease component JHS83_17520 PF13407 Periplasmic binding protein domain JHS83_17525 PF00294 pfkB family carbohydrate kinase JHS83_17530 PF00356 Bacterial regulatory proteins, lacI family JHS83_17540 PF04973 Nicotinamide mononucleotide transporter JHS83_17545 PF01048 Phosphorylase superfamily JHS83_17565 PF00486 Transcriptional regulatory protein, C terminal JHS83_17565 PF00072 Response regulator receiver domain JHS83_17580 PF00245 Alkaline phosphatase JHS83_17590 PF00082 Subtilase family JHS83_17590 PF01483 Proprotein convertase P-domain JHS83_17600 PF00072 Response regulator receiver domain JHS83_17600 PF00990 Diguanylate cyclase, GGDEF domain JHS83_17605 PF03222 Tryptophan/tyrosine permease family JHS83_17610 PF00583 Acetyltransferase (GNAT) family JHS83_17615 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JHS83_17615 PF00384 Molybdopterin oxidoreductase JHS83_17615 PF01568 Molydopterin dinucleotide binding domain JHS83_17620 PF14824 Sirohaem biosynthesis protein central JHS83_17620 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JHS83_17620 PF10414 Sirohaem synthase dimerisation region JHS83_17625 PF02885 Glycosyl transferase family, helical bundle domain JHS83_17625 PF00591 Glycosyl transferase family, a/b domain JHS83_17630 PF01738 Dienelactone hydrolase family JHS83_17635 PF03861 ANTAR domain JHS83_17635 PF08376 Nitrate and nitrite sensing JHS83_17645 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_17650 PF00005 ABC transporter JHS83_17655 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS83_17655 PF13806 Rieske-like [2Fe-2S] domain JHS83_17655 PF18267 Rubredoxin NAD+ reductase C-terminal domain JHS83_17655 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JHS83_17655 PF04324 BFD-like [2Fe-2S] binding domain JHS83_17655 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JHS83_17670 PF08361 MAATS-type transcriptional repressor, C-terminal region JHS83_17670 PF00440 Bacterial regulatory proteins, tetR family JHS83_17685 PF00211 Adenylate and Guanylate cyclase catalytic domain JHS83_17685 PF00072 Response regulator receiver domain JHS83_17710 PF03793 PASTA domain JHS83_17710 PF00069 Protein kinase domain JHS83_17725 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE JHS83_17730 PF13677 Membrane MotB of proton-channel complex MotA/MotB JHS83_17730 PF00691 OmpA family JHS83_17735 PF06761 Intracellular multiplication and human macrophage-killing JHS83_17735 PF14331 ImcF-related N-terminal domain JHS83_17735 PF06744 Type VI secretion protein IcmF C-terminal JHS83_17755 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 JHS83_17760 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath JHS83_17765 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath JHS83_17780 PF05947 Type VI secretion system, TssF JHS83_17790 PF10431 C-terminal, D2-small domain, of ClpB protein JHS83_17790 PF17871 AAA lid domain JHS83_17790 PF07724 AAA domain (Cdc48 subfamily) JHS83_17790 PF00004 ATPase family associated with various cellular activities (AAA) JHS83_17800 PF06715 Gp5 C-terminal repeat (3 copies) JHS83_17800 PF04717 Type VI secretion system, phage-baseplate injector JHS83_17815 PF00149 Calcineurin-like phosphoesterase JHS83_17815 PF12320 Type 5 capsule protein repressor C-terminal domain JHS83_17820 PF13476 AAA domain JHS83_17840 PF08212 Lipocalin-like domain JHS83_17850 PF07690 Major Facilitator Superfamily JHS83_17860 PF03606 C4-dicarboxylate anaerobic carrier JHS83_17865 PF00034 Cytochrome c JHS83_17870 PF01212 Beta-eliminating lyase JHS83_17880 PF07728 AAA domain (dynein-related subfamily) JHS83_17880 PF17868 AAA lid domain JHS83_17880 PF12592 Protein of unknown function (DUF3763) JHS83_17885 PF05762 VWA domain containing CoxE-like protein JHS83_17900 PF03466 LysR substrate binding domain JHS83_17900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_17905 PF09330 D-lactate dehydrogenase, membrane binding JHS83_17905 PF01565 FAD binding domain JHS83_17925 PF01168 Alanine racemase, N-terminal domain JHS83_17925 PF00842 Alanine racemase, C-terminal domain JHS83_17945 PF00128 Alpha amylase, catalytic domain JHS83_17945 PF09154 Domain of unknown function (DUF1939) JHS83_17965 PF06965 Na+/H+ antiporter 1 JHS83_17965 PF13462 Thioredoxin JHS83_18000 PF01272 Transcription elongation factor, GreA/GreB, C-term JHS83_18000 PF14760 Rnk N-terminus JHS83_18005 PF04324 BFD-like [2Fe-2S] binding domain JHS83_18005 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JHS83_18005 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JHS83_18005 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS83_18005 PF18267 Rubredoxin NAD+ reductase C-terminal domain JHS83_18010 PF13806 Rieske-like [2Fe-2S] domain JHS83_18015 PF01226 Formate/nitrite transporter JHS83_18020 PF14824 Sirohaem biosynthesis protein central JHS83_18020 PF10414 Sirohaem synthase dimerisation region JHS83_18020 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JHS83_18035 PF03605 Anaerobic c4-dicarboxylate membrane transporter JHS83_18045 PF07715 TonB-dependent Receptor Plug Domain JHS83_18045 PF00593 TonB dependent receptor JHS83_18060 PF11756 Nitrous oxide-stimulated promoter JHS83_18065 PF01554 MatE JHS83_18070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_18070 PF00512 His Kinase A (phospho-acceptor) domain JHS83_18070 PF12833 Helix-turn-helix domain JHS83_18070 PF07494 Two component regulator propeller JHS83_18070 PF00072 Response regulator receiver domain JHS83_18070 PF07495 Y_Y_Y domain JHS83_18075 PF07690 Major Facilitator Superfamily JHS83_18080 PF00085 Thioredoxin JHS83_18085 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JHS83_18085 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JHS83_18105 PF01238 Phosphomannose isomerase type I JHS83_18110 PF07690 Major Facilitator Superfamily JHS83_18115 PF07730 Histidine kinase JHS83_18115 PF05231 MASE1 JHS83_18115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_18120 PF00196 Bacterial regulatory proteins, luxR family JHS83_18120 PF00072 Response regulator receiver domain JHS83_18125 PF07690 Major Facilitator Superfamily JHS83_18130 PF02634 FdhD/NarQ family JHS83_18135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_18135 PF03466 LysR substrate binding domain JHS83_18140 PF00384 Molybdopterin oxidoreductase JHS83_18145 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS83_18145 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JHS83_18160 PF04143 Sulphur transport JHS83_18170 PF00873 AcrB/AcrD/AcrF family JHS83_18175 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS83_18185 PF03477 ATP cone domain JHS83_18185 PF13597 Anaerobic ribonucleoside-triphosphate reductase JHS83_18195 PF01554 MatE JHS83_18200 PF12833 Helix-turn-helix domain JHS83_18205 PF00155 Aminotransferase class I and II JHS83_18210 PF18030 RimK PreATP-grasp domain JHS83_18210 PF08443 RimK-like ATP-grasp domain JHS83_18220 PF04076 Bacterial OB fold (BOF) protein JHS83_18225 PF07685 CobB/CobQ-like glutamine amidotransferase domain JHS83_18235 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_18240 PF00005 ABC transporter JHS83_18240 PF03459 TOBE domain JHS83_18250 PF00563 EAL domain JHS83_18250 PF01590 GAF domain JHS83_18250 PF00990 Diguanylate cyclase, GGDEF domain JHS83_18250 PF00360 Phytochrome region JHS83_18260 PF00990 Diguanylate cyclase, GGDEF domain JHS83_18275 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch JHS83_18275 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JHS83_18275 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JHS83_18280 PF02233 NAD(P) transhydrogenase beta subunit JHS83_18290 PF00072 Response regulator receiver domain JHS83_18290 PF00486 Transcriptional regulatory protein, C terminal JHS83_18305 PF03701 Uncharacterised protein family (UPF0181) JHS83_18310 PF00582 Universal stress protein family JHS83_18320 PF03466 LysR substrate binding domain JHS83_18320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_18400 PF01253 Translation initiation factor SUI1 JHS83_18410 PF01820 D-ala D-ala ligase N-terminus JHS83_18410 PF07478 D-ala D-ala ligase C-terminus JHS83_18420 PF13607 Succinyl-CoA ligase like flavodoxin domain JHS83_18420 PF13380 CoA binding domain JHS83_18420 PF00583 Acetyltransferase (GNAT) family JHS83_18425 PF03466 LysR substrate binding domain JHS83_18425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_18430 PF00593 TonB dependent receptor JHS83_18430 PF07715 TonB-dependent Receptor Plug Domain JHS83_18435 PF16363 GDP-mannose 4,6 dehydratase JHS83_18440 PF00563 EAL domain JHS83_18440 PF05231 MASE1 JHS83_18440 PF08447 PAS fold JHS83_18440 PF08448 PAS fold JHS83_18440 PF13426 PAS domain JHS83_18440 PF00990 Diguanylate cyclase, GGDEF domain JHS83_18445 PF03746 LamB/YcsF family JHS83_18450 PF02682 Carboxyltransferase domain, subdomain C and D JHS83_18455 PF02626 Carboxyltransferase domain, subdomain A and B JHS83_18470 PF00005 ABC transporter JHS83_18475 PF13472 GDSL-like Lipase/Acylhydrolase family JHS83_18480 PF07055 Enoyl reductase FAD binding domain JHS83_18480 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase JHS83_18480 PF12241 Trans-2-enoyl-CoA reductase catalytic region JHS83_18485 PF03707 Bacterial signalling protein N terminal repeat JHS83_18485 PF00563 EAL domain JHS83_18485 PF00990 Diguanylate cyclase, GGDEF domain JHS83_18485 PF13188 PAS domain JHS83_18495 PF00684 DnaJ central domain JHS83_18495 PF00226 DnaJ domain JHS83_18495 PF01556 DnaJ C terminal domain JHS83_18520 PF12793 Sugar transport-related sRNA regulator N-term JHS83_18520 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JHS83_18530 PF03061 Thioesterase superfamily JHS83_18545 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JHS83_18550 PF12262 Bacterial virulence factor lipase N-terminal JHS83_18565 PF03741 Integral membrane protein TerC family JHS83_18570 PF00149 Calcineurin-like phosphoesterase JHS83_18570 PF02872 5'-nucleotidase, C-terminal domain JHS83_18575 PF11398 Protein of unknown function (DUF2813) JHS83_18580 PF06496 Protein of unknown function (DUF1097) JHS83_18585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_18585 PF03466 LysR substrate binding domain JHS83_18590 PF01226 Formate/nitrite transporter JHS83_18595 PF04264 YceI-like domain JHS83_18600 PF01292 Prokaryotic cytochrome b561 JHS83_18615 PF00563 EAL domain JHS83_18615 PF12792 CSS motif domain associated with EAL JHS83_18620 PF00271 Helicase conserved C-terminal domain JHS83_18620 PF00270 DEAD/DEAH box helicase JHS83_18625 PF04336 Acyl carrier protein phosphodiesterase JHS83_18630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS83_18635 PF13419 Haloacid dehalogenase-like hydrolase JHS83_18640 PF11849 Domain of unknown function (DUF3369) JHS83_18655 PF00294 pfkB family carbohydrate kinase JHS83_18660 PF01268 Formate--tetrahydrofolate ligase JHS83_18665 PF00483 Nucleotidyl transferase JHS83_18670 PF06483 Chitinase C JHS83_18670 PF00704 Glycosyl hydrolases family 18 JHS83_18675 PF12833 Helix-turn-helix domain JHS83_18675 PF06719 AraC-type transcriptional regulator N-terminus JHS83_18680 PF00465 Iron-containing alcohol dehydrogenase JHS83_18690 PF14532 Sigma-54 interaction domain JHS83_18690 PF00072 Response regulator receiver domain JHS83_18690 PF02954 Bacterial regulatory protein, Fis family JHS83_18695 PF00672 HAMP domain JHS83_18695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_18695 PF00512 His Kinase A (phospho-acceptor) domain JHS83_18705 PF07690 Major Facilitator Superfamily JHS83_18710 PF02887 Pyruvate kinase, alpha/beta domain JHS83_18710 PF00224 Pyruvate kinase, barrel domain JHS83_18715 PF00005 ABC transporter JHS83_18720 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_18725 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS83_18730 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_18735 PF00563 EAL domain JHS83_18735 PF01590 GAF domain JHS83_18735 PF00990 Diguanylate cyclase, GGDEF domain JHS83_18735 PF00989 PAS fold JHS83_18750 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JHS83_18750 PF00356 Bacterial regulatory proteins, lacI family JHS83_18755 PF00381 PTS HPr component phosphorylation site JHS83_18755 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JHS83_18760 PF00294 pfkB family carbohydrate kinase JHS83_18765 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JHS83_18765 PF02378 Phosphotransferase system, EIIC JHS83_18775 PF00873 AcrB/AcrD/AcrF family JHS83_18785 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS83_18795 PF01571 Aminomethyltransferase folate-binding domain JHS83_18795 PF08669 Glycine cleavage T-protein C-terminal barrel domain JHS83_18805 PF00464 Serine hydroxymethyltransferase JHS83_18810 PF01597 Glycine cleavage H-protein JHS83_18815 PF02347 Glycine cleavage system P-protein JHS83_18860 PF01039 Carboxyl transferase domain JHS83_18860 PF17848 Acetyl-coA carboxylase zinc finger domain JHS83_18865 PF03466 LysR substrate binding domain JHS83_18865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_18870 PF00929 Exonuclease JHS83_18870 PF02811 PHP domain JHS83_18870 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JHS83_18870 PF11490 DNA polymerase III polC-type N-terminus II JHS83_18870 PF14579 Helix-hairpin-helix motif JHS83_18870 PF07733 Bacterial DNA polymerase III alpha NTPase domain JHS83_18895 PF02253 Phospholipase A1 JHS83_18905 PF09278 MerR, DNA binding JHS83_18905 PF00376 MerR family regulatory protein JHS83_18910 PF01327 Polypeptide deformylase JHS83_18940 PF00571 CBS domain JHS83_18940 PF01769 Divalent cation transporter JHS83_18940 PF03448 MgtE intracellular N domain JHS83_18960 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JHS83_18965 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JHS83_18975 PF01757 Acyltransferase family JHS83_18985 PF09722 Protein of unknown function (DUF2384) JHS83_18990 PF00141 Peroxidase JHS83_18995 PF13187 4Fe-4S dicluster domain JHS83_18995 PF01645 Conserved region in glutamate synthase JHS83_19005 PF00072 Response regulator receiver domain JHS83_19005 PF12431 Transcriptional regulator JHS83_19010 PF00989 PAS fold JHS83_19010 PF17203 Single cache domain 3 JHS83_19010 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain JHS83_19010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_19015 PF00939 Sodium:sulfate symporter transmembrane region JHS83_19020 PF00171 Aldehyde dehydrogenase family JHS83_19040 PF00892 EamA-like transporter family JHS83_19045 PF00893 Small Multidrug Resistance protein JHS83_19050 PF03413 Peptidase propeptide and YPEB domain JHS83_19050 PF01447 Thermolysin metallopeptidase, catalytic domain JHS83_19050 PF04151 Bacterial pre-peptidase C-terminal domain JHS83_19050 PF07504 Fungalysin/Thermolysin Propeptide Motif JHS83_19050 PF02868 Thermolysin metallopeptidase, alpha-helical domain JHS83_19060 PF01569 PAP2 superfamily JHS83_19070 PF00892 EamA-like transporter family JHS83_19085 PF00072 Response regulator receiver domain JHS83_19085 PF01584 CheW-like domain JHS83_19105 PF00072 Response regulator receiver domain JHS83_19105 PF00196 Bacterial regulatory proteins, luxR family JHS83_19115 PF00990 Diguanylate cyclase, GGDEF domain JHS83_19120 PF00196 Bacterial regulatory proteins, luxR family JHS83_19120 PF00072 Response regulator receiver domain JHS83_19125 PF13188 PAS domain JHS83_19125 PF00563 EAL domain JHS83_19125 PF03707 Bacterial signalling protein N terminal repeat JHS83_19125 PF00990 Diguanylate cyclase, GGDEF domain JHS83_19130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_19130 PF00512 His Kinase A (phospho-acceptor) domain JHS83_19130 PF00072 Response regulator receiver domain JHS83_19130 PF09456 RcsC Alpha-Beta-Loop (ABL) JHS83_19140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_19140 PF03466 LysR substrate binding domain JHS83_19155 PF05736 OprF membrane domain JHS83_19155 PF00691 OmpA family JHS83_19190 PF13737 Transposase DDE domain JHS83_19200 PF00437 Type II/IV secretion system protein JHS83_19215 PF00263 Bacterial type II and III secretion system protein JHS83_19215 PF13629 Pilus formation protein N terminal region JHS83_19215 PF04972 BON domain JHS83_19235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_19235 PF03466 LysR substrate binding domain JHS83_19240 PF12833 Helix-turn-helix domain JHS83_19250 PF04151 Bacterial pre-peptidase C-terminal domain JHS83_19250 PF08453 Peptidase family M9 N-terminal JHS83_19250 PF01752 Collagenase JHS83_19260 PF01926 50S ribosome-binding GTPase JHS83_19265 PF00155 Aminotransferase class I and II JHS83_19270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_19270 PF00072 Response regulator receiver domain JHS83_19280 PF00814 Glycoprotease family JHS83_19280 PF00583 Acetyltransferase (GNAT) family JHS83_19290 PF03606 C4-dicarboxylate anaerobic carrier JHS83_19295 PF04011 LemA family JHS83_19300 PF01435 Peptidase family M48 JHS83_19315 PF18081 Fanconi anemia-associated nuclease SAP domain JHS83_19315 PF08774 VRR-NUC domain JHS83_19325 PF04055 Radical SAM superfamily JHS83_19325 PF13186 Iron-sulfur cluster-binding domain JHS83_19340 PF04076 Bacterial OB fold (BOF) protein JHS83_19345 PF00781 Diacylglycerol kinase catalytic domain JHS83_19350 PF03466 LysR substrate binding domain JHS83_19350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_19355 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JHS83_19355 PF01872 RibD C-terminal domain JHS83_19370 PF00092 von Willebrand factor type A domain JHS83_19385 PF17863 AAA lid domain JHS83_19385 PF07726 ATPase family associated with various cellular activities (AAA) JHS83_19390 PF04055 Radical SAM superfamily JHS83_19390 PF13186 Iron-sulfur cluster-binding domain JHS83_19395 PF00884 Sulfatase JHS83_19400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_19400 PF03466 LysR substrate binding domain JHS83_19410 PF00884 Sulfatase JHS83_19415 PF16385 Domain of unknown function JHS83_19415 PF00884 Sulfatase JHS83_19420 PF00486 Transcriptional regulatory protein, C terminal JHS83_19420 PF00072 Response regulator receiver domain JHS83_19435 PF00072 Response regulator receiver domain JHS83_19435 PF01627 Hpt domain JHS83_19435 PF00512 His Kinase A (phospho-acceptor) domain JHS83_19435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_19435 PF00672 HAMP domain JHS83_19440 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JHS83_19445 PF02142 MGS-like domain JHS83_19450 PF13361 UvrD-like helicase C-terminal domain JHS83_19450 PF12462 DNA helicase IV / RNA helicase N terminal JHS83_19450 PF00580 UvrD/REP helicase N-terminal domain JHS83_19455 PF12805 FUSC-like inner membrane protein yccS JHS83_19485 PF00593 TonB dependent receptor JHS83_19485 PF07715 TonB-dependent Receptor Plug Domain JHS83_19495 PF13411 MerR HTH family regulatory protein JHS83_19500 PF00005 ABC transporter JHS83_19505 PF01032 FecCD transport family JHS83_19510 PF01032 FecCD transport family JHS83_19515 PF01497 Periplasmic binding protein JHS83_19535 PF04314 Copper chaperone PCu(A)C JHS83_19540 PF00012 Hsp70 protein JHS83_19555 PF00676 Dehydrogenase E1 component JHS83_19560 PF02779 Transketolase, pyrimidine binding domain JHS83_19560 PF02780 Transketolase, C-terminal domain JHS83_19565 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JHS83_19565 PF00364 Biotin-requiring enzyme JHS83_19565 PF02817 e3 binding domain JHS83_19575 PF02798 Glutathione S-transferase, N-terminal domain JHS83_19575 PF00043 Glutathione S-transferase, C-terminal domain JHS83_19580 PF03466 LysR substrate binding domain JHS83_19580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_19590 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_19595 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_19600 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS83_19605 PF00005 ABC transporter JHS83_19610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_19610 PF03466 LysR substrate binding domain JHS83_19625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_19625 PF03466 LysR substrate binding domain JHS83_19630 PF08031 Berberine and berberine like JHS83_19630 PF01565 FAD binding domain JHS83_19635 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JHS83_19645 PF13737 Transposase DDE domain JHS83_19650 PF01040 UbiA prenyltransferase family JHS83_19660 PF00510 Cytochrome c oxidase subunit III JHS83_19665 PF00115 Cytochrome C and Quinol oxidase polypeptide I JHS83_19670 PF06481 COX Aromatic Rich Motif JHS83_19670 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JHS83_19680 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JHS83_19680 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JHS83_19685 PF00378 Enoyl-CoA hydratase/isomerase JHS83_19690 PF00378 Enoyl-CoA hydratase/isomerase JHS83_19695 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JHS83_19695 PF02770 Acyl-CoA dehydrogenase, middle domain JHS83_19695 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JHS83_19700 PF00171 Aldehyde dehydrogenase family JHS83_19705 PF02803 Thiolase, C-terminal domain JHS83_19705 PF00108 Thiolase, N-terminal domain JHS83_19710 PF00376 MerR family regulatory protein JHS83_19710 PF09278 MerR, DNA binding JHS83_19715 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JHS83_19715 PF02770 Acyl-CoA dehydrogenase, middle domain JHS83_19715 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JHS83_19720 PF01039 Carboxyl transferase domain JHS83_19725 PF00378 Enoyl-CoA hydratase/isomerase JHS83_19730 PF00682 HMGL-like JHS83_19735 PF10063 Uncharacterized integral membrane protein (DUF2301) JHS83_19745 PF13426 PAS domain JHS83_19745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS83_19745 PF08447 PAS fold JHS83_19750 PF00871 Acetokinase family JHS83_19755 PF00990 Diguanylate cyclase, GGDEF domain JHS83_19755 PF13426 PAS domain JHS83_19755 PF00563 EAL domain JHS83_19760 PF00271 Helicase conserved C-terminal domain JHS83_19760 PF00270 DEAD/DEAH box helicase JHS83_19760 PF03880 DbpA RNA binding domain JHS83_19765 PF00575 S1 RNA binding domain JHS83_19765 PF00773 RNB domain JHS83_19765 PF08206 Ribonuclease B OB domain JHS83_19770 PF12833 Helix-turn-helix domain JHS83_19780 PF12849 PBP superfamily domain JHS83_19785 PF01575 MaoC like domain JHS83_19800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS83_19800 PF12729 Four helix bundle sensory module for signal transduction JHS83_19800 PF00672 HAMP domain JHS83_19805 PF00005 ABC transporter JHS83_19810 PF12792 CSS motif domain associated with EAL JHS83_19810 PF00563 EAL domain JHS83_19830 PF00271 Helicase conserved C-terminal domain JHS83_19830 PF00270 DEAD/DEAH box helicase JHS83_19835 PF07683 Cobalamin synthesis protein cobW C-terminal domain JHS83_19835 PF02492 CobW/HypB/UreG, nucleotide-binding domain JHS83_19845 PF01470 Pyroglutamyl peptidase JHS83_19855 PF00291 Pyridoxal-phosphate dependent enzyme JHS83_19860 PF09905 DNA-binding protein VF530 JHS83_19865 PF00270 DEAD/DEAH box helicase JHS83_19865 PF00271 Helicase conserved C-terminal domain JHS83_19870 PF12843 Putative quorum-sensing-regulated virulence factor JHS83_19890 PF01329 Pterin 4 alpha carbinolamine dehydratase JHS83_19895 PF00351 Biopterin-dependent aromatic amino acid hydroxylase JHS83_19900 PF00501 AMP-binding enzyme JHS83_19900 PF13193 AMP-binding enzyme C-terminal domain JHS83_19910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_19910 PF03466 LysR substrate binding domain JHS83_19930 PF00892 EamA-like transporter family JHS83_19945 PF00465 Iron-containing alcohol dehydrogenase JHS83_19950 PF07995 Glucose / Sorbosone dehydrogenase JHS83_19960 PF00210 Ferritin-like domain JHS83_19965 PF00672 HAMP domain JHS83_19965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS83_19965 PF17200 Single Cache domain 2 JHS83_19975 PF12704 MacB-like periplasmic core domain JHS83_19975 PF02687 FtsX-like permease family JHS83_19975 PF00005 ABC transporter JHS83_19980 PF12704 MacB-like periplasmic core domain JHS83_19980 PF00005 ABC transporter JHS83_19980 PF02687 FtsX-like permease family JHS83_19995 PF00990 Diguanylate cyclase, GGDEF domain JHS83_20000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS83_20000 PF08447 PAS fold JHS83_20000 PF13426 PAS domain JHS83_20010 PF00313 'Cold-shock' DNA-binding domain JHS83_20040 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JHS83_20040 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JHS83_20045 PF01040 UbiA prenyltransferase family JHS83_20050 PF02628 Cytochrome oxidase assembly protein JHS83_20070 PF00510 Cytochrome c oxidase subunit III JHS83_20075 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 JHS83_20080 PF00115 Cytochrome C and Quinol oxidase polypeptide I JHS83_20085 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JHS83_20085 PF02790 Cytochrome C oxidase subunit II, transmembrane domain JHS83_20090 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JHS83_20090 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JHS83_20090 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JHS83_20090 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JHS83_20100 PF01810 LysE type translocator JHS83_20105 PF12833 Helix-turn-helix domain JHS83_20120 PF01557 Fumarylacetoacetate (FAA) hydrolase family JHS83_20130 PF00267 Gram-negative porin JHS83_20135 PF00892 EamA-like transporter family JHS83_20140 PF00462 Glutaredoxin JHS83_20150 PF07690 Major Facilitator Superfamily JHS83_20155 PF03466 LysR substrate binding domain JHS83_20155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_20160 PF08447 PAS fold JHS83_20160 PF08448 PAS fold JHS83_20160 PF00990 Diguanylate cyclase, GGDEF domain JHS83_20160 PF00563 EAL domain JHS83_20165 PF01551 Peptidase family M23 JHS83_20165 PF08525 Opacity-associated protein A N-terminal motif JHS83_20165 PF01476 LysM domain JHS83_20185 PF07670 Nucleoside recognition JHS83_20190 PF00672 HAMP domain JHS83_20190 PF02743 Cache domain JHS83_20190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS83_20200 PF03222 Tryptophan/tyrosine permease family JHS83_20235 PF08240 Alcohol dehydrogenase GroES-like domain JHS83_20235 PF00107 Zinc-binding dehydrogenase JHS83_20240 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JHS83_20240 PF02378 Phosphotransferase system, EIIC JHS83_20245 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JHS83_20260 PF01758 Sodium Bile acid symporter family JHS83_20270 PF01161 Phosphatidylethanolamine-binding protein JHS83_20275 PF02567 Phenazine biosynthesis-like protein JHS83_20280 PF10282 Lactonase, 7-bladed beta-propeller JHS83_20285 PF00672 HAMP domain JHS83_20285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS83_20285 PF17200 Single Cache domain 2 JHS83_20295 PF00005 ABC transporter JHS83_20335 PF00873 AcrB/AcrD/AcrF family JHS83_20355 PF00990 Diguanylate cyclase, GGDEF domain JHS83_20365 PF13302 Acetyltransferase (GNAT) domain JHS83_20375 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JHS83_20380 PF00873 AcrB/AcrD/AcrF family JHS83_20385 PF13533 Biotin-lipoyl like JHS83_20395 PF00326 Prolyl oligopeptidase family JHS83_20395 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JHS83_20400 PF12848 ABC transporter JHS83_20400 PF00005 ABC transporter JHS83_20405 PF00582 Universal stress protein family JHS83_20410 PF02525 Flavodoxin-like fold JHS83_20415 PF02254 TrkA-N domain JHS83_20415 PF00999 Sodium/hydrogen exchanger family JHS83_20430 PF00128 Alpha amylase, catalytic domain JHS83_20440 PF08453 Peptidase family M9 N-terminal JHS83_20440 PF01752 Collagenase JHS83_20440 PF04151 Bacterial pre-peptidase C-terminal domain JHS83_20455 PF03466 LysR substrate binding domain JHS83_20455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_20460 PF00210 Ferritin-like domain JHS83_20465 PF00141 Peroxidase JHS83_20490 PF13087 AAA domain JHS83_20490 PF13091 PLD-like domain JHS83_20505 PF01584 CheW-like domain JHS83_20505 PF00072 Response regulator receiver domain JHS83_20515 PF01243 Pyridoxamine 5'-phosphate oxidase JHS83_20520 PF06228 Haem utilisation ChuX/HutX JHS83_20525 PF04055 Radical SAM superfamily JHS83_20530 PF03544 Gram-negative bacterial TonB protein C-terminal JHS83_20535 PF01618 MotA/TolQ/ExbB proton channel family JHS83_20540 PF02472 Biopolymer transport protein ExbD/TolR JHS83_20550 PF01032 FecCD transport family JHS83_20555 PF00005 ABC transporter JHS83_20595 PF01467 Cytidylyltransferase-like JHS83_20600 PF02540 NAD synthase JHS83_20605 PF03476 MOSC N-terminal beta barrel domain JHS83_20605 PF03473 MOSC domain JHS83_20605 PF03476 MOSC N-terminal beta barrel domain JHS83_20605 PF00111 2Fe-2S iron-sulfur cluster binding domain JHS83_20605 PF03473 MOSC domain JHS83_20605 PF00111 2Fe-2S iron-sulfur cluster binding domain JHS83_20610 PF01679 Proteolipid membrane potential modulator JHS83_20615 PF01979 Amidohydrolase family JHS83_20620 PF05661 Protein of unknown function (DUF808) JHS83_20650 PF01497 Periplasmic binding protein JHS83_20650 PF12833 Helix-turn-helix domain JHS83_20655 PF00155 Aminotransferase class I and II JHS83_20680 PF00535 Glycosyl transferase family 2 JHS83_20695 PF00271 Helicase conserved C-terminal domain JHS83_20695 PF00270 DEAD/DEAH box helicase JHS83_20705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_20705 PF03466 LysR substrate binding domain JHS83_20710 PF03466 LysR substrate binding domain JHS83_20710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_20720 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JHS83_20725 PF08240 Alcohol dehydrogenase GroES-like domain JHS83_20725 PF00107 Zinc-binding dehydrogenase JHS83_20740 PF12833 Helix-turn-helix domain JHS83_20740 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JHS83_20745 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) JHS83_20760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_20760 PF03466 LysR substrate binding domain JHS83_20765 PF00709 Adenylosuccinate synthetase JHS83_20770 PF00710 Asparaginase, N-terminal JHS83_20770 PF17763 Glutaminase/Asparaginase C-terminal domain JHS83_20775 PF03618 Kinase/pyrophosphorylase JHS83_20780 PF00391 PEP-utilising enzyme, mobile domain JHS83_20780 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JHS83_20780 PF02896 PEP-utilising enzyme, TIM barrel domain JHS83_20795 PF00579 tRNA synthetases class I (W and Y) JHS83_20800 PF13416 Bacterial extracellular solute-binding protein JHS83_20810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_20810 PF03466 LysR substrate binding domain JHS83_20815 PF13533 Biotin-lipoyl like JHS83_20820 PF00873 AcrB/AcrD/AcrF family JHS83_20835 PF07694 5TMR of 5TMR-LYT JHS83_20835 PF00990 Diguanylate cyclase, GGDEF domain JHS83_20845 PF00196 Bacterial regulatory proteins, luxR family JHS83_20850 PF02837 Glycosyl hydrolases family 2, sugar binding domain JHS83_20850 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JHS83_20850 PF00703 Glycosyl hydrolases family 2 JHS83_20850 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 JHS83_20855 PF02028 BCCT, betaine/carnitine/choline family transporter JHS83_20860 PF00392 Bacterial regulatory proteins, gntR family JHS83_20860 PF07702 UTRA domain JHS83_20885 PF08402 TOBE domain JHS83_20885 PF00005 ABC transporter JHS83_20915 PF00873 AcrB/AcrD/AcrF family JHS83_20920 PF13533 Biotin-lipoyl like JHS83_20925 PF13091 PLD-like domain JHS83_20950 PF09278 MerR, DNA binding JHS83_20950 PF00376 MerR family regulatory protein JHS83_20960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_20960 PF03466 LysR substrate binding domain JHS83_20970 PF13378 Enolase C-terminal domain-like JHS83_20970 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JHS83_20975 PF03764 Elongation factor G, domain IV JHS83_20975 PF00679 Elongation factor G C-terminus JHS83_20975 PF00009 Elongation factor Tu GTP binding domain JHS83_20975 PF03144 Elongation factor Tu domain 2 JHS83_20975 PF14492 Elongation Factor G, domain II JHS83_21000 PF02001 Protein of unknown function DUF134 JHS83_21005 PF17185 NlpE C-terminal OB domain JHS83_21005 PF04170 NlpE N-terminal domain JHS83_21010 PF06629 MltA-interacting protein MipA JHS83_21020 PF00691 OmpA family JHS83_21020 PF01389 OmpA-like transmembrane domain JHS83_21025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_21025 PF03466 LysR substrate binding domain JHS83_21050 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family JHS83_21050 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain JHS83_21060 PF00857 Isochorismatase family JHS83_21070 PF06628 Catalase-related immune-responsive JHS83_21070 PF00199 Catalase JHS83_21080 PF08220 DeoR-like helix-turn-helix domain JHS83_21080 PF00455 DeoR C terminal sensor domain JHS83_21085 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JHS83_21090 PF01625 Peptide methionine sulfoxide reductase JHS83_21090 PF01641 SelR domain JHS83_21105 PF13737 Transposase DDE domain JHS83_21115 PF07971 Glycosyl hydrolase family 92 JHS83_21115 PF17678 Glycosyl hydrolase family 92 N-terminal domain JHS83_21120 PF17678 Glycosyl hydrolase family 92 N-terminal domain JHS83_21120 PF07971 Glycosyl hydrolase family 92 JHS83_21130 PF07971 Glycosyl hydrolase family 92 JHS83_21130 PF17678 Glycosyl hydrolase family 92 N-terminal domain JHS83_21135 PF07971 Glycosyl hydrolase family 92 JHS83_21135 PF17678 Glycosyl hydrolase family 92 N-terminal domain JHS83_21140 PF03060 Nitronate monooxygenase JHS83_21145 PF00149 Calcineurin-like phosphoesterase JHS83_21145 PF02872 5'-nucleotidase, C-terminal domain JHS83_21155 PF00440 Bacterial regulatory proteins, tetR family JHS83_21155 PF08359 YsiA-like protein, C-terminal region JHS83_21170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_21170 PF03466 LysR substrate binding domain JHS83_21175 PF01810 LysE type translocator JHS83_21190 PF00118 TCP-1/cpn60 chaperonin family JHS83_21195 PF00166 Chaperonin 10 Kd subunit JHS83_21200 PF00581 Rhodanese-like domain JHS83_21225 PF01070 FMN-dependent dehydrogenase JHS83_21245 PF00669 Bacterial flagellin N-terminal helical region JHS83_21255 PF10135 Rod binding protein JHS83_21255 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JHS83_21260 PF02119 Flagellar P-ring protein JHS83_21265 PF02107 Flagellar L-ring protein JHS83_21270 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JHS83_21270 PF00460 Flagella basal body rod protein JHS83_21275 PF00460 Flagella basal body rod protein JHS83_21275 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JHS83_21280 PF07559 Flagellar basal body protein FlaE JHS83_21280 PF00460 Flagella basal body rod protein JHS83_21280 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JHS83_21285 PF13860 FlgD Ig-like domain JHS83_21285 PF13861 FlgD Tudor-like domain JHS83_21285 PF03963 Flagellar hook capping protein - N-terminal region JHS83_21290 PF00460 Flagella basal body rod protein JHS83_21290 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JHS83_21295 PF00460 Flagella basal body rod protein JHS83_21315 PF01464 Transglycosylase SLT domain JHS83_21320 PF08264 Anticodon-binding domain of tRNA JHS83_21320 PF00133 tRNA synthetases class I (I, L, M and V) JHS83_21340 PF03313 Serine dehydratase alpha chain JHS83_21340 PF03315 Serine dehydratase beta chain JHS83_21345 PF00854 POT family JHS83_21355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_21355 PF03466 LysR substrate binding domain JHS83_21365 PF03466 LysR substrate binding domain JHS83_21365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_21370 PF00691 OmpA family JHS83_21370 PF01389 OmpA-like transmembrane domain JHS83_21375 PF18027 Cytosolic carboxypeptidase N-terminal domain JHS83_21375 PF00246 Zinc carboxypeptidase JHS83_21380 PF01266 FAD dependent oxidoreductase JHS83_21385 PF04393 Protein of unknown function (DUF535) JHS83_21400 PF07702 UTRA domain JHS83_21400 PF00392 Bacterial regulatory proteins, gntR family JHS83_21405 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_21410 PF00005 ABC transporter JHS83_21425 PF00266 Aminotransferase class-V JHS83_21430 PF00202 Aminotransferase class-III JHS83_21435 PF13419 Haloacid dehalogenase-like hydrolase JHS83_21440 PF00356 Bacterial regulatory proteins, lacI family JHS83_21445 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JHS83_21455 PF03611 PTS system sugar-specific permease component JHS83_21465 PF05922 Peptidase inhibitor I9 JHS83_21465 PF00082 Subtilase family JHS83_21470 PF00657 GDSL-like Lipase/Acylhydrolase JHS83_21475 PF02321 Outer membrane efflux protein JHS83_21480 PF00005 ABC transporter JHS83_21480 PF02687 FtsX-like permease family JHS83_21480 PF12704 MacB-like periplasmic core domain JHS83_21485 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS83_21490 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JHS83_21495 PF00194 Eukaryotic-type carbonic anhydrase JHS83_21500 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) JHS83_21515 PF13419 Haloacid dehalogenase-like hydrolase JHS83_21520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_21520 PF03466 LysR substrate binding domain JHS83_21555 PF14602 Hexapeptide repeat of succinyl-transferase JHS83_21555 PF12464 Maltose acetyltransferase JHS83_21560 PF02566 OsmC-like protein JHS83_21565 PF01641 SelR domain JHS83_21565 PF01625 Peptide methionine sulfoxide reductase JHS83_21580 PF04244 Deoxyribodipyrimidine photo-lyase-related protein JHS83_21585 PF00875 DNA photolyase JHS83_21585 PF03441 FAD binding domain of DNA photolyase JHS83_21590 PF00990 Diguanylate cyclase, GGDEF domain JHS83_21605 PF12729 Four helix bundle sensory module for signal transduction JHS83_21605 PF00672 HAMP domain JHS83_21605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS83_21610 PF05230 MASE2 domain JHS83_21610 PF00990 Diguanylate cyclase, GGDEF domain JHS83_21615 PF13532 2OG-Fe(II) oxygenase superfamily JHS83_21625 PF07670 Nucleoside recognition JHS83_21625 PF07662 Na+ dependent nucleoside transporter C-terminus JHS83_21625 PF01773 Na+ dependent nucleoside transporter N-terminus JHS83_21640 PF01212 Beta-eliminating lyase JHS83_21650 PF01266 FAD dependent oxidoreductase JHS83_21665 PF05525 Branched-chain amino acid transport protein JHS83_21670 PF00990 Diguanylate cyclase, GGDEF domain JHS83_21670 PF08448 PAS fold JHS83_21675 PF00072 Response regulator receiver domain JHS83_21675 PF02954 Bacterial regulatory protein, Fis family JHS83_21675 PF00158 Sigma-54 interaction domain JHS83_21680 PF02743 Cache domain JHS83_21680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_21680 PF00512 His Kinase A (phospho-acceptor) domain JHS83_21685 PF00232 Glycosyl hydrolase family 1 JHS83_21710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_21710 PF03466 LysR substrate binding domain JHS83_21715 PF08443 RimK-like ATP-grasp domain JHS83_21715 PF18030 RimK PreATP-grasp domain JHS83_21720 PF08443 RimK-like ATP-grasp domain JHS83_21720 PF18030 RimK PreATP-grasp domain JHS83_21725 PF00753 Metallo-beta-lactamase superfamily JHS83_21730 PF17810 Arginine decarboxylase helical bundle domain JHS83_21730 PF17944 Arginine decarboxylase C-terminal helical extension JHS83_21730 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JHS83_21735 PF00491 Arginase family JHS83_21740 PF07690 Major Facilitator Superfamily JHS83_21745 PF00326 Prolyl oligopeptidase family JHS83_21745 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JHS83_21760 PF00950 ABC 3 transport family JHS83_21765 PF00005 ABC transporter JHS83_21770 PF01297 Zinc-uptake complex component A periplasmic JHS83_21810 PF02472 Biopolymer transport protein ExbD/TolR JHS83_21815 PF01618 MotA/TolQ/ExbB proton channel family JHS83_21820 PF01618 MotA/TolQ/ExbB proton channel family JHS83_21830 PF07715 TonB-dependent Receptor Plug Domain JHS83_21830 PF00593 TonB dependent receptor JHS83_21835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_21835 PF00512 His Kinase A (phospho-acceptor) domain JHS83_21835 PF16750 Sensor domain of 2-component histidine kinase JHS83_21835 PF00672 HAMP domain JHS83_21840 PF00072 Response regulator receiver domain JHS83_21840 PF00486 Transcriptional regulatory protein, C terminal JHS83_21845 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JHS83_21845 PF00056 lactate/malate dehydrogenase, NAD binding domain JHS83_21850 PF03009 Glycerophosphoryl diester phosphodiesterase family JHS83_21860 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JHS83_21860 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JHS83_21865 PF10928 Protein of unknown function (DUF2810) JHS83_21915 PF04013 Putative SAM-dependent RNA methyltransferase JHS83_21920 PF01523 Putative modulator of DNA gyrase JHS83_21925 PF01523 Putative modulator of DNA gyrase JHS83_21930 PF08543 Phosphomethylpyrimidine kinase JHS83_21935 PF00005 ABC transporter JHS83_21940 PF00528 Binding-protein-dependent transport system inner membrane component JHS83_21945 PF09084 NMT1/THI5 like JHS83_21950 PF03070 TENA/THI-4/PQQC family JHS83_21955 PF02110 Hydroxyethylthiazole kinase family JHS83_21960 PF02581 Thiamine monophosphate synthase JHS83_21970 PF00384 Molybdopterin oxidoreductase JHS83_21970 PF18364 Molybdopterin oxidoreductase N-terminal domain JHS83_21970 PF01568 Molydopterin dinucleotide binding domain JHS83_21975 PF03264 NapC/NirT cytochrome c family, N-terminal region JHS83_22000 PF00583 Acetyltransferase (GNAT) family JHS83_22020 PF00155 Aminotransferase class I and II JHS83_22020 PF00392 Bacterial regulatory proteins, gntR family JHS83_22025 PF02595 Glycerate kinase family JHS83_22030 PF02447 GntP family permease JHS83_22035 PF05651 Putative sugar diacid recognition JHS83_22035 PF17853 GGDEF-like domain JHS83_22035 PF13556 PucR C-terminal helix-turn-helix domain JHS83_22070 PF03466 LysR substrate binding domain JHS83_22070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_22080 PF03466 LysR substrate binding domain JHS83_22080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_22085 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JHS83_22090 PF01661 Macro domain JHS83_22095 PF01204 Trehalase JHS83_22105 PF12706 Beta-lactamase superfamily domain JHS83_22115 PF07690 Major Facilitator Superfamily JHS83_22120 PF13533 Biotin-lipoyl like JHS83_22125 PF03922 OmpW family JHS83_22130 PF13599 Pentapeptide repeats (9 copies) JHS83_22145 PF18416 N-acetylglucosamine binding protein domain 2 JHS83_22145 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading JHS83_22150 PF01037 Lrp/AsnC ligand binding domain JHS83_22155 PF01810 LysE type translocator JHS83_22160 PF08021 Siderophore-interacting FAD-binding domain JHS83_22160 PF04954 Siderophore-interacting protein JHS83_22165 PF14583 Oligogalacturonate lyase JHS83_22170 PF00474 Sodium:solute symporter family JHS83_22175 PF13229 Right handed beta helix region JHS83_22190 PF01081 KDPG and KHG aldolase JHS83_22195 PF00294 pfkB family carbohydrate kinase JHS83_22210 PF07883 Cupin domain JHS83_22215 PF10688 Bacterial inner membrane protein JHS83_22225 PF01614 Bacterial transcriptional regulator JHS83_22225 PF09339 IclR helix-turn-helix domain JHS83_22240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_22240 PF03466 LysR substrate binding domain JHS83_22245 PF00797 N-acetyltransferase JHS83_22250 PF00107 Zinc-binding dehydrogenase JHS83_22250 PF08240 Alcohol dehydrogenase GroES-like domain JHS83_22255 PF00756 Putative esterase JHS83_22265 PF00990 Diguanylate cyclase, GGDEF domain JHS83_22265 PF17152 Periplasmic sensor domain JHS83_22280 PF03466 LysR substrate binding domain JHS83_22280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_22295 PF00849 RNA pseudouridylate synthase JHS83_22300 PF01554 MatE JHS83_22305 PF00990 Diguanylate cyclase, GGDEF domain JHS83_22305 PF00563 EAL domain JHS83_22315 PF06865 Pyrimidine/purine nucleoside phosphorylase JHS83_22325 PF08329 Chitinase A, N-terminal domain JHS83_22325 PF00704 Glycosyl hydrolases family 18 JHS83_22345 PF03600 Citrate transporter JHS83_22355 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JHS83_22365 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JHS83_22365 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JHS83_22370 PF06029 AlkA N-terminal domain JHS83_22370 PF00730 HhH-GPD superfamily base excision DNA repair protein JHS83_22380 PF07681 DoxX JHS83_22385 PF17954 Quercetinase C-terminal cupin domain JHS83_22385 PF02678 Pirin JHS83_22390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_22390 PF03466 LysR substrate binding domain JHS83_22405 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JHS83_22415 PF03616 Sodium/glutamate symporter JHS83_22420 PF00392 Bacterial regulatory proteins, gntR family JHS83_22420 PF00155 Aminotransferase class I and II JHS83_22425 PF00005 ABC transporter JHS83_22435 PF03616 Sodium/glutamate symporter JHS83_22440 PF00132 Bacterial transferase hexapeptide (six repeats) JHS83_22455 PF17200 Single Cache domain 2 JHS83_22455 PF00672 HAMP domain JHS83_22455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS83_22460 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JHS83_22470 PF00072 Response regulator receiver domain JHS83_22470 PF04397 LytTr DNA-binding domain JHS83_22475 PF07694 5TMR of 5TMR-LYT JHS83_22475 PF13492 GAF domain JHS83_22475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_22475 PF06580 Histidine kinase JHS83_22495 PF00005 ABC transporter JHS83_22505 PF01098 Cell cycle protein JHS83_22510 PF01709 Transcriptional regulator JHS83_22520 PF00512 His Kinase A (phospho-acceptor) domain JHS83_22520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_22520 PF00672 HAMP domain JHS83_22520 PF01627 Hpt domain JHS83_22520 PF00072 Response regulator receiver domain JHS83_22520 PF17149 Periplasmic sensor domain found in signal transduction proteins JHS83_22530 PF08719 Domain of unknown function (DUF1768) JHS83_22530 PF00925 GTP cyclohydrolase II JHS83_22540 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS83_22540 PF00005 ABC transporter JHS83_22545 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS83_22545 PF00005 ABC transporter JHS83_22560 PF13614 AAA domain JHS83_22560 PF18607 ParA helix turn helix domain JHS83_22565 PF02195 ParB-like nuclease domain JHS83_22565 PF08775 ParB family JHS83_22570 PF05127 Helicase JHS83_22570 PF13718 GNAT acetyltransferase 2 JHS83_22580 PF00132 Bacterial transferase hexapeptide (six repeats) JHS83_22590 PF03575 Peptidase family S51 JHS83_22595 PF00267 Gram-negative porin JHS83_22600 PF02378 Phosphotransferase system, EIIC JHS83_22600 PF00367 phosphotransferase system, EIIB JHS83_22605 PF01380 SIS domain JHS83_22610 PF01418 Helix-turn-helix domain, rpiR family JHS83_22610 PF01380 SIS domain JHS83_22615 PF00246 Zinc carboxypeptidase JHS83_22620 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JHS83_22625 PF03358 NADPH-dependent FMN reductase JHS83_22645 PF00005 ABC transporter JHS83_22645 PF03412 Peptidase C39 family JHS83_22645 PF00664 ABC transporter transmembrane region JHS83_22660 PF00529 HlyD membrane-fusion protein of T1SS JHS83_22665 PF00158 Sigma-54 interaction domain JHS83_22665 PF02954 Bacterial regulatory protein, Fis family JHS83_22665 PF00072 Response regulator receiver domain JHS83_22670 PF00512 His Kinase A (phospho-acceptor) domain JHS83_22670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_22670 PF02743 Cache domain JHS83_22680 PF01243 Pyridoxamine 5'-phosphate oxidase JHS83_22680 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region JHS83_22690 PF12833 Helix-turn-helix domain JHS83_22695 PF18327 Proline utilization A proline dehydrogenase N-terminal domain JHS83_22695 PF14850 DNA-binding domain of Proline dehydrogenase JHS83_22695 PF01619 Proline dehydrogenase JHS83_22695 PF00171 Aldehyde dehydrogenase family JHS83_22705 PF00474 Sodium:solute symporter family JHS83_22740 PF01037 Lrp/AsnC ligand binding domain JHS83_22765 PF13401 AAA domain JHS83_22765 PF09077 Mu B transposition protein, C terminal JHS83_22815 PF02810 SEC-C motif JHS83_22975 PF01555 DNA methylase JHS83_23000 PF00664 ABC transporter transmembrane region JHS83_23000 PF00005 ABC transporter JHS83_23010 PF06719 AraC-type transcriptional regulator N-terminus JHS83_23010 PF12833 Helix-turn-helix domain JHS83_23025 PF00271 Helicase conserved C-terminal domain JHS83_23025 PF00270 DEAD/DEAH box helicase JHS83_23030 PF03473 MOSC domain JHS83_23030 PF03475 3-alpha domain JHS83_23045 PF02056 Family 4 glycosyl hydrolase JHS83_23045 PF11975 Family 4 glycosyl hydrolase C-terminal domain JHS83_23050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_23050 PF03466 LysR substrate binding domain JHS83_23055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS83_23055 PF02743 Cache domain JHS83_23055 PF00672 HAMP domain JHS83_23065 PF04542 Sigma-70 region 2 JHS83_23065 PF08281 Sigma-70, region 4 JHS83_23070 PF01965 DJ-1/PfpI family JHS83_23070 PF12833 Helix-turn-helix domain JHS83_23075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_23075 PF03466 LysR substrate binding domain JHS83_23090 PF13192 Thioredoxin domain JHS83_23090 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS83_23095 PF10417 C-terminal domain of 1-Cys peroxiredoxin JHS83_23095 PF00578 AhpC/TSA family JHS83_23100 PF01047 MarR family JHS83_23105 PF02566 OsmC-like protein JHS83_23120 PF02311 AraC-like ligand binding domain JHS83_23120 PF12833 Helix-turn-helix domain JHS83_23130 PF11762 L-arabinose isomerase C-terminal domain JHS83_23130 PF02610 L-arabinose isomerase JHS83_23135 PF00596 Class II Aldolase and Adducin N-terminal domain JHS83_23140 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JHS83_23140 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JHS83_23145 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JHS83_23150 PF00005 ABC transporter JHS83_23155 PF02653 Branched-chain amino acid transport system / permease component JHS83_23160 PF01136 Peptidase family U32 JHS83_23170 PF02378 Phosphotransferase system, EIIC JHS83_23170 PF00367 phosphotransferase system, EIIB JHS83_23175 PF00486 Transcriptional regulatory protein, C terminal JHS83_23175 PF00072 Response regulator receiver domain JHS83_23180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_23180 PF08521 Two-component sensor kinase N-terminal JHS83_23180 PF00512 His Kinase A (phospho-acceptor) domain JHS83_23185 PF01547 Bacterial extracellular solute-binding protein JHS83_23190 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JHS83_23190 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JHS83_23195 PF06276 Ferric iron reductase FhuF-like transporter JHS83_23195 PF04183 IucA / IucC family JHS83_23205 PF06276 Ferric iron reductase FhuF-like transporter JHS83_23205 PF04183 IucA / IucC family JHS83_23215 PF00593 TonB dependent receptor JHS83_23215 PF07715 TonB-dependent Receptor Plug Domain JHS83_23220 PF00593 TonB dependent receptor JHS83_23220 PF07715 TonB-dependent Receptor Plug Domain JHS83_23220 PF07660 Secretin and TonB N terminus short domain JHS83_23225 PF01497 Periplasmic binding protein JHS83_23230 PF01032 FecCD transport family JHS83_23235 PF01032 FecCD transport family JHS83_23240 PF00005 ABC transporter JHS83_23245 PF00672 HAMP domain JHS83_23245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS83_23245 PF17200 Single Cache domain 2 JHS83_23250 PF00675 Insulinase (Peptidase family M16) JHS83_23250 PF05193 Peptidase M16 inactive domain JHS83_23260 PF04225 Opacity-associated protein A LysM-like domain JHS83_23260 PF01551 Peptidase family M23 JHS83_23270 PF07690 Major Facilitator Superfamily JHS83_23280 PF00128 Alpha amylase, catalytic domain JHS83_23280 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JHS83_23285 PF02264 LamB porin JHS83_23300 PF00128 Alpha amylase, catalytic domain JHS83_23300 PF02903 Alpha amylase, N-terminal ig-like domain JHS83_23300 PF16657 Maltogenic Amylase, C-terminal domain JHS83_23305 PF04231 Endonuclease I JHS83_23310 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JHS83_23310 PF11852 Domain of unknown function (DUF3372) JHS83_23310 PF03714 Bacterial pullanase-associated domain JHS83_23310 PF18494 Pullulanase Ins domain JHS83_23310 PF17967 Pullulanase N2 domain JHS83_23325 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain JHS83_23325 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain JHS83_23325 PF01276 Orn/Lys/Arg decarboxylase, major domain JHS83_23330 PF13520 Amino acid permease JHS83_23340 PF08543 Phosphomethylpyrimidine kinase JHS83_23350 PF00375 Sodium:dicarboxylate symporter family JHS83_23355 PF03193 RsgA GTPase JHS83_23360 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JHS83_23360 PF00367 phosphotransferase system, EIIB JHS83_23360 PF02378 Phosphotransferase system, EIIC JHS83_23370 PF02630 SCO1/SenC JHS83_23385 PF00196 Bacterial regulatory proteins, luxR family JHS83_23385 PF17874 MalT-like TPR region JHS83_23390 PF00343 Carbohydrate phosphorylase JHS83_23395 PF02446 4-alpha-glucanotransferase JHS83_23400 PF02806 Alpha amylase, C-terminal all-beta domain JHS83_23400 PF00128 Alpha amylase, catalytic domain JHS83_23400 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JHS83_23405 PF00912 Transglycosylase JHS83_23410 PF00128 Alpha amylase, catalytic domain JHS83_23425 PF07670 Nucleoside recognition JHS83_23430 PF07670 Nucleoside recognition JHS83_23435 PF01546 Peptidase family M20/M25/M40 JHS83_23435 PF07687 Peptidase dimerisation domain JHS83_23440 PF06803 Protein of unknown function (DUF1232) JHS83_23445 PF00375 Sodium:dicarboxylate symporter family JHS83_23455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_23455 PF03466 LysR substrate binding domain JHS83_23460 PF08803 Putative mono-oxygenase ydhR JHS83_23470 PF13614 AAA domain JHS83_23470 PF13807 G-rich domain on putative tyrosine kinase JHS83_23470 PF02706 Chain length determinant protein JHS83_23475 PF01451 Low molecular weight phosphotyrosine protein phosphatase JHS83_23480 PF18412 Outer-membrane lipoprotein Wza C-terminal domain JHS83_23480 PF02563 Polysaccharide biosynthesis/export protein JHS83_23480 PF10531 SLBB domain JHS83_23485 PF00881 Nitroreductase family JHS83_23490 PF01914 MarC family integral membrane protein JHS83_23495 PF01734 Patatin-like phospholipase JHS83_23500 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading JHS83_23500 PF18416 N-acetylglucosamine binding protein domain 2 JHS83_23505 PF17773 UPF0176 acylphosphatase like domain JHS83_23505 PF00581 Rhodanese-like domain JHS83_23515 PF00561 alpha/beta hydrolase fold JHS83_23520 PF00768 D-alanyl-D-alanine carboxypeptidase JHS83_23520 PF07943 Penicillin-binding protein 5, C-terminal domain JHS83_23525 PF00686 Starch binding domain JHS83_23525 PF00128 Alpha amylase, catalytic domain JHS83_23530 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JHS83_23530 PF12833 Helix-turn-helix domain JHS83_23535 PF00881 Nitroreductase family JHS83_23545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_23545 PF03466 LysR substrate binding domain JHS83_23550 PF09905 DNA-binding protein VF530 JHS83_23560 PF00970 Oxidoreductase FAD-binding domain JHS83_23560 PF00175 Oxidoreductase NAD-binding domain JHS83_23570 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) JHS83_23575 PF01594 AI-2E family transporter JHS83_23585 PF13533 Biotin-lipoyl like JHS83_23605 PF00892 EamA-like transporter family JHS83_23610 PF03466 LysR substrate binding domain JHS83_23610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_23615 PF07690 Major Facilitator Superfamily JHS83_23630 PF00583 Acetyltransferase (GNAT) family JHS83_23640 PF00923 Transaldolase/Fructose-6-phosphate aldolase JHS83_23645 PF04055 Radical SAM superfamily JHS83_23650 PF02901 Pyruvate formate lyase-like JHS83_23650 PF01228 Glycine radical JHS83_23670 PF08000 Bacterial PH domain JHS83_23680 PF13677 Membrane MotB of proton-channel complex MotA/MotB JHS83_23680 PF00691 OmpA family JHS83_23685 PF01618 MotA/TolQ/ExbB proton channel family JHS83_23690 PF04545 Sigma-70, region 4 JHS83_23690 PF04542 Sigma-70 region 2 JHS83_23695 PF03748 Flagellar basal body-associated protein FliL JHS83_23710 PF02561 Flagellar protein FliS JHS83_23715 PF07196 Flagellin hook IN motif JHS83_23715 PF07195 Flagellar hook-associated protein 2 C-terminus JHS83_23715 PF02465 Flagellar hook-associated protein 2 N-terminus JHS83_23725 PF00669 Bacterial flagellin N-terminal helical region JHS83_23725 PF00700 Bacterial flagellin C-terminal helical region JHS83_23735 PF00771 FHIPEP family JHS83_23740 PF01312 FlhB HrpN YscU SpaS Family JHS83_23745 PF01311 Bacterial export proteins, family 1 JHS83_23750 PF01313 Bacterial export proteins, family 3 JHS83_23755 PF00813 FliP family JHS83_23760 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JHS83_23775 PF00158 Sigma-54 interaction domain JHS83_23775 PF00072 Response regulator receiver domain JHS83_23775 PF02954 Bacterial regulatory protein, Fis family JHS83_23780 PF02049 Flagellar hook-basal body complex protein FliE JHS83_23785 PF08345 Flagellar M-ring protein C-terminal JHS83_23785 PF01514 Secretory protein of YscJ/FliF family JHS83_23790 PF14842 FliG N-terminal domain JHS83_23790 PF01706 FliG C-terminal domain JHS83_23790 PF14841 FliG middle domain JHS83_23800 PF18269 T3SS EscN ATPase C-terminal domain JHS83_23800 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JHS83_23815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_23815 PF03466 LysR substrate binding domain JHS83_23850 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JHS83_23855 PF03466 LysR substrate binding domain JHS83_23855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS83_23875 PF00072 Response regulator receiver domain JHS83_23875 PF00486 Transcriptional regulatory protein, C terminal JHS83_23880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS83_23880 PF00512 His Kinase A (phospho-acceptor) domain JHS83_23880 PF13426 PAS domain JHS83_23880 PF00072 Response regulator receiver domain JHS83_23880 PF08448 PAS fold JHS83_23885 PF00080 Copper/zinc superoxide dismutase (SODC) JHS83_23890 PF00266 Aminotransferase class-V JHS83_23895 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS83_23900 PF00563 EAL domain JHS83_23900 PF00990 Diguanylate cyclase, GGDEF domain JHS83_23900 PF03707 Bacterial signalling protein N terminal repeat JHS83_23905 PF00155 Aminotransferase class I and II JHS83_23910 PF08240 Alcohol dehydrogenase GroES-like domain JHS83_23910 PF00107 Zinc-binding dehydrogenase JHS83_23950 PF13401 AAA domain JHS83_23950 PF09077 Mu B transposition protein, C terminal JHS83_23975 PF04245 37-kD nucleoid-associated bacterial protein JHS83_24000 PF02810 SEC-C motif JHS83_24170 PF01555 DNA methylase JHS83_24215 PF00691 OmpA family JHS83_24265 PF01797 Transposase IS200 like JHS83_24280 PF01609 Transposase DDE domain JHS83_24280 PF14706 Transposase DNA-binding JHS83_24280 PF02281 Transposase Tn5 dimerisation domain JHS83_24365 PF00239 Resolvase, N terminal domain JHS83_24365 PF02796 Helix-turn-helix domain of resolvase JHS83_24395 PF13362 Toprim domain JHS83_24395 PF18818 Metallopeptidase superfamily domain JHS83_24395 PF08401 Domain of unknown function (DUF1738) JHS83_24405 PF03230 Antirestriction protein JHS83_24425 PF01751 Toprim domain JHS83_24425 PF01131 DNA topoisomerase JHS83_24475 PF01464 Transglycosylase SLT domain JHS83_24495 PF01848 Hok/gef family JHS83_24535 PF00437 Type II/IV secretion system protein JHS83_24565 PF03743 Bacterial conjugation TrbI-like protein JHS83_24575 PF03524 Conjugal transfer protein JHS83_24595 PF00437 Type II/IV secretion system protein JHS83_24605 PF03135 CagE, TrbE, VirB family, component of type IV transporter system JHS83_24610 PF05101 Type IV secretory pathway, VirB3-like protein JHS83_24615 PF04956 TrbC/VIRB2 family JHS83_24655 PF04754 Putative transposase, YhgA-like JHS83_24660 PF13614 AAA domain JHS83_24675 PF02796 Helix-turn-helix domain of resolvase JHS83_24675 PF00239 Resolvase, N terminal domain JHS83_24770 PF18818 Metallopeptidase superfamily domain JHS83_24770 PF13362 Toprim domain JHS83_24770 PF08401 Domain of unknown function (DUF1738) JHS83_24800 PF01848 Hok/gef family JHS83_24825 PF07669 Eco57I restriction-modification methylase JHS83_24825 PF02384 N-6 DNA Methylase JHS83_24830 PF13737 Transposase DDE domain JHS83_24835 PF13737 Transposase DDE domain JHS83_24860 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system JHS83_24885 PF13614 AAA domain JHS83_24890 PF04754 Putative transposase, YhgA-like JHS83_24895 PF13737 Transposase DDE domain JHS83_24910 PF04956 TrbC/VIRB2 family JHS83_24915 PF05101 Type IV secretory pathway, VirB3-like protein JHS83_24920 PF03135 CagE, TrbE, VirB family, component of type IV transporter system JHS83_24930 PF00437 Type II/IV secretion system protein JHS83_24945 PF03524 Conjugal transfer protein JHS83_24955 PF03743 Bacterial conjugation TrbI-like protein JHS83_24980 PF00437 Type II/IV secretion system protein JHS83_25020 PF01848 Hok/gef family JHS83_25035 PF10502 Signal peptidase, peptidase S26 JHS83_25040 PF01464 Transglycosylase SLT domain JHS83_25100 PF01131 DNA topoisomerase JHS83_25100 PF01751 Toprim domain JHS83_25140 PF07996 Type IV secretion system proteins JHS83_25145 PF04610 TrbL/VirB6 plasmid conjugal transfer protein JHS83_25225 PF00691 OmpA family JHS83_25225 PF01389 OmpA-like transmembrane domain JHS83_25230 PF11999 Protein of unknown function (DUF3494) JHS83_25230 PF02368 Bacterial Ig-like domain (group 2) JHS83_25255 PF02371 Transposase IS116/IS110/IS902 family JHS83_25255 PF01548 Transposase JHS83_25270 PF00155 Aminotransferase class I and II JHS83_25275 PF03553 Na+/H+ antiporter family JHS83_25280 PF00356 Bacterial regulatory proteins, lacI family JHS83_25295 PF02796 Helix-turn-helix domain of resolvase JHS83_25295 PF00239 Resolvase, N terminal domain JHS83_25305 PF00239 Resolvase, N terminal domain JHS83_25305 PF02796 Helix-turn-helix domain of resolvase JHS83_25325 PF13610 DDE domain JHS83_25335 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system JHS83_25340 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system JHS83_25350 PF01526 Tn3 transposase DDE domain JHS83_25350 PF13700 Domain of unknown function (DUF4158) JHS83_25355 PF02796 Helix-turn-helix domain of resolvase JHS83_25355 PF00239 Resolvase, N terminal domain JHS83_25410 PF01381 Helix-turn-helix JHS83_25430 PF04956 TrbC/VIRB2 family JHS83_25435 PF05101 Type IV secretory pathway, VirB3-like protein JHS83_25440 PF03135 CagE, TrbE, VirB family, component of type IV transporter system JHS83_25445 PF04335 VirB8 protein JHS83_25450 PF03524 Conjugal transfer protein