locus-tag class description JHS95_00005 PF00308 Bacterial dnaA protein JHS95_00005 PF08299 Bacterial dnaA protein helix-turn-helix JHS95_00005 PF11638 DnaA N-terminal domain JHS95_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain JHS95_00010 PF02767 DNA polymerase III beta subunit, central domain JHS95_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain JHS95_00015 PF02463 RecF/RecN/SMC N terminal domain JHS95_00020 PF01751 Toprim domain JHS95_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_00020 PF00986 DNA gyrase B subunit, carboxyl terminus JHS95_00020 PF00204 DNA gyrase B JHS95_00020 PF18053 DNA gyrase B subunit insert domain JHS95_00030 PF00011 Hsp20/alpha crystallin family JHS95_00035 PF00155 Aminotransferase class I and II JHS95_00040 PF00128 Alpha amylase, catalytic domain JHS95_00045 PF05746 DALR anticodon binding domain JHS95_00045 PF02092 Glycyl-tRNA synthetase beta subunit JHS95_00050 PF02091 Glycyl-tRNA synthetase alpha subunit JHS95_00055 PF01169 Uncharacterized protein family UPF0016 JHS95_00065 PF01206 Sulfurtransferase TusA JHS95_00075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_00075 PF03466 LysR substrate binding domain JHS95_00080 PF08240 Alcohol dehydrogenase GroES-like domain JHS95_00080 PF00107 Zinc-binding dehydrogenase JHS95_00085 PF00108 Thiolase, N-terminal domain JHS95_00085 PF02803 Thiolase, C-terminal domain JHS95_00090 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JHS95_00090 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JHS95_00090 PF00378 Enoyl-CoA hydratase/isomerase JHS95_00095 PF09186 Domain of unknown function (DUF1949) JHS95_00095 PF01205 Uncharacterized protein family UPF0029 JHS95_00100 PF02386 Cation transport protein JHS95_00105 PF12724 Flavodoxin domain JHS95_00145 PF13358 DDE superfamily endonuclease JHS95_00160 PF02537 CrcB-like protein, Camphor Resistance (CrcB) JHS95_00165 PF01964 Radical SAM ThiC family JHS95_00165 PF13667 ThiC-associated domain JHS95_00170 PF02581 Thiamine monophosphate synthase JHS95_00175 PF00899 ThiF family JHS95_00180 PF02597 ThiS family JHS95_00185 PF05690 Thiazole biosynthesis protein ThiG JHS95_00190 PF06968 Biotin and Thiamin Synthesis associated domain JHS95_00190 PF04055 Radical SAM superfamily JHS95_00195 PF01321 Creatinase/Prolidase N-terminal domain JHS95_00195 PF01321 Creatinase/Prolidase N-terminal domain JHS95_00195 PF00557 Metallopeptidase family M24 JHS95_00195 PF00557 Metallopeptidase family M24 JHS95_00200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_00200 PF03466 LysR substrate binding domain JHS95_00205 PF07690 Major Facilitator Superfamily JHS95_00225 PF05114 Protein of unknown function (DUF692) JHS95_00235 PF13361 UvrD-like helicase C-terminal domain JHS95_00235 PF00580 UvrD/REP helicase N-terminal domain JHS95_00245 PF01810 LysE type translocator JHS95_00255 PF00892 EamA-like transporter family JHS95_00260 PF00570 HRDC domain JHS95_00260 PF09382 RQC domain JHS95_00260 PF00271 Helicase conserved C-terminal domain JHS95_00260 PF16124 RecQ zinc-binding JHS95_00260 PF00270 DEAD/DEAH box helicase JHS95_00270 PF02592 Putative vitamin uptake transporter JHS95_00275 PF02541 Ppx/GppA phosphatase family JHS95_00280 PF00270 DEAD/DEAH box helicase JHS95_00280 PF00271 Helicase conserved C-terminal domain JHS95_00285 PF00085 Thioredoxin JHS95_00290 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JHS95_00290 PF07498 Rho termination factor, N-terminal domain JHS95_00290 PF07497 Rho termination factor, RNA-binding domain JHS95_00300 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase JHS95_00305 PF00111 2Fe-2S iron-sulfur cluster binding domain JHS95_00310 PF00175 Oxidoreductase NAD-binding domain JHS95_00350 PF07219 HemY protein N-terminus JHS95_00355 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase JHS95_00360 PF02602 Uroporphyrinogen-III synthase HemD JHS95_00365 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain JHS95_00365 PF03900 Porphobilinogen deaminase, C-terminal domain JHS95_00370 PF01295 Adenylate cyclase, class-I JHS95_00370 PF12633 Adenylate cyclase NT domain JHS95_00375 PF01491 Frataxin-like domain JHS95_00385 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JHS95_00385 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JHS95_00390 PF01678 Diaminopimelate epimerase JHS95_00400 PF02899 Phage integrase, N-terminal SAM-like domain JHS95_00400 PF00589 Phage integrase family JHS95_00405 PF13419 Haloacid dehalogenase-like hydrolase JHS95_00410 PF00990 Diguanylate cyclase, GGDEF domain JHS95_00410 PF10442 FIST C domain JHS95_00410 PF08495 FIST N domain JHS95_00410 PF00563 EAL domain JHS95_00415 PF03942 DTW domain JHS95_00435 PF12146 Serine aminopeptidase, S33 JHS95_00440 PF01810 LysE type translocator JHS95_00445 PF08668 HDOD domain JHS95_00445 PF00563 EAL domain JHS95_00450 PF01022 Bacterial regulatory protein, arsR family JHS95_00455 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JHS95_00455 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JHS95_00505 PF01914 MarC family integral membrane protein JHS95_00520 PF00448 SRP54-type protein, GTPase domain JHS95_00520 PF02881 SRP54-type protein, helical bundle domain JHS95_00525 PF00005 ABC transporter JHS95_00530 PF18075 FtsX extracellular domain JHS95_00535 PF00140 Sigma-70 factor, region 1.2 JHS95_00535 PF04545 Sigma-70, region 4 JHS95_00535 PF04542 Sigma-70 region 2 JHS95_00540 PF00581 Rhodanese-like domain JHS95_00545 PF01694 Rhomboid family JHS95_00545 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease JHS95_00550 PF03748 Flagellar basal body-associated protein FliL JHS95_00555 PF04345 Chorismate lyase JHS95_00560 PF01040 UbiA prenyltransferase family JHS95_00565 PF01553 Acyltransferase JHS95_00570 PF00717 Peptidase S24-like JHS95_00570 PF01726 LexA DNA binding domain JHS95_00575 PF04072 Leucine carboxyl methyltransferase JHS95_00580 PF01554 MatE JHS95_00585 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JHS95_00585 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS95_00590 PF00440 Bacterial regulatory proteins, tetR family JHS95_00600 PF05958 tRNA (Uracil-5-)-methyltransferase JHS95_00605 PF07715 TonB-dependent Receptor Plug Domain JHS95_00605 PF00593 TonB dependent receptor JHS95_00615 PF01177 Asp/Glu/Hydantoin racemase JHS95_00670 PF13091 PLD-like domain JHS95_00680 PF01565 FAD binding domain JHS95_00680 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JHS95_00685 PF03099 Biotin/lipoate A/B protein ligase family JHS95_00685 PF08279 HTH domain JHS95_00685 PF02237 Biotin protein ligase C terminal domain JHS95_00690 PF00485 Phosphoribulokinase / Uridine kinase family JHS95_00715 PF03143 Elongation factor Tu C-terminal domain JHS95_00715 PF03144 Elongation factor Tu domain 2 JHS95_00715 PF00009 Elongation factor Tu GTP binding domain JHS95_00720 PF00584 SecE/Sec61-gamma subunits of protein translocation complex JHS95_00725 PF02357 Transcription termination factor nusG JHS95_00725 PF00467 KOW motif JHS95_00730 PF03946 Ribosomal protein L11, N-terminal domain JHS95_00730 PF00298 Ribosomal protein L11, RNA binding domain JHS95_00735 PF00687 Ribosomal protein L1p/L10e family JHS95_00740 PF00466 Ribosomal protein L10 JHS95_00745 PF00542 Ribosomal protein L7/L12 C-terminal domain JHS95_00745 PF16320 Ribosomal protein L7/L12 dimerisation domain JHS95_00750 PF04563 RNA polymerase beta subunit JHS95_00750 PF04561 RNA polymerase Rpb2, domain 2 JHS95_00750 PF04565 RNA polymerase Rpb2, domain 3 JHS95_00750 PF10385 RNA polymerase beta subunit external 1 domain JHS95_00750 PF00562 RNA polymerase Rpb2, domain 6 JHS95_00750 PF04560 RNA polymerase Rpb2, domain 7 JHS95_00755 PF04998 RNA polymerase Rpb1, domain 5 JHS95_00755 PF04983 RNA polymerase Rpb1, domain 3 JHS95_00755 PF04997 RNA polymerase Rpb1, domain 1 JHS95_00755 PF00623 RNA polymerase Rpb1, domain 2 JHS95_00755 PF05000 RNA polymerase Rpb1, domain 4 JHS95_00760 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ JHS95_00765 PF00293 NUDIX domain JHS95_00765 PF09297 NADH pyrophosphatase zinc ribbon domain JHS95_00780 PF01208 Uroporphyrinogen decarboxylase (URO-D) JHS95_00785 PF03167 Uracil DNA glycosylase superfamily JHS95_00790 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JHS95_00795 PF04222 Protein of unknown function (DUF416) JHS95_00800 PF01595 Cyclin M transmembrane N-terminal domain JHS95_00800 PF00571 CBS domain JHS95_00805 PF00216 Bacterial DNA-binding protein JHS95_00815 PF02844 Phosphoribosylglycinamide synthetase, N domain JHS95_00815 PF02843 Phosphoribosylglycinamide synthetase, C domain JHS95_00815 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain JHS95_00820 PF01808 AICARFT/IMPCHase bienzyme JHS95_00820 PF02142 MGS-like domain JHS95_00825 PF13411 MerR HTH family regulatory protein JHS95_00830 PF18500 CadC C-terminal domain 1 JHS95_00830 PF00486 Transcriptional regulatory protein, C terminal JHS95_00835 PF13520 Amino acid permease JHS95_00840 PF01276 Orn/Lys/Arg decarboxylase, major domain JHS95_00840 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain JHS95_00840 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain JHS95_00900 PF05230 MASE2 domain JHS95_00900 PF00990 Diguanylate cyclase, GGDEF domain JHS95_00905 PF12848 ABC transporter JHS95_00905 PF00005 ABC transporter JHS95_00910 PF07690 Major Facilitator Superfamily JHS95_00915 PF02954 Bacterial regulatory protein, Fis family JHS95_00920 PF01207 Dihydrouridine synthase (Dus) JHS95_00930 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JHS95_00930 PF00289 Biotin carboxylase, N-terminal domain JHS95_00930 PF02785 Biotin carboxylase C-terminal domain JHS95_00935 PF00364 Biotin-requiring enzyme JHS95_00940 PF01220 Dehydroquinase class II JHS95_00945 PF16177 Acetyl-coenzyme A synthetase N-terminus JHS95_00945 PF00501 AMP-binding enzyme JHS95_00945 PF13193 AMP-binding enzyme C-terminal domain JHS95_00960 PF12832 MFS_1 like family JHS95_00965 PF00672 HAMP domain JHS95_00965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_00965 PF00512 His Kinase A (phospho-acceptor) domain JHS95_00965 PF00072 Response regulator receiver domain JHS95_00965 PF01627 Hpt domain JHS95_00970 PF10415 Fumarase C C-terminus JHS95_00970 PF00206 Lyase JHS95_00985 PF00474 Sodium:solute symporter family JHS95_00995 PF03471 Transporter associated domain JHS95_00995 PF00999 Sodium/hydrogen exchanger family JHS95_00995 PF02080 TrkA-C domain JHS95_01000 PF00196 Bacterial regulatory proteins, luxR family JHS95_01000 PF00072 Response regulator receiver domain JHS95_01005 PF02683 Cytochrome C biogenesis protein transmembrane region JHS95_01005 PF11412 Disulphide bond corrector protein DsbC JHS95_01010 PF03605 Anaerobic c4-dicarboxylate membrane transporter JHS95_01015 PF10415 Fumarase C C-terminus JHS95_01015 PF00206 Lyase JHS95_01020 PF04186 FxsA cytoplasmic membrane protein JHS95_01025 PF00588 SpoU rRNA Methylase family JHS95_01030 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JHS95_01030 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JHS95_01035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_01035 PF00512 His Kinase A (phospho-acceptor) domain JHS95_01035 PF16527 Two-component sensor protein CpxA, periplasmic domain JHS95_01035 PF00672 HAMP domain JHS95_01040 PF00072 Response regulator receiver domain JHS95_01040 PF00486 Transcriptional regulatory protein, C terminal JHS95_01045 PF07813 LTXXQ motif family protein JHS95_01050 PF01545 Cation efflux family JHS95_01050 PF16916 Dimerisation domain of Zinc Transporter JHS95_01055 PF00365 Phosphofructokinase JHS95_01060 PF01554 MatE JHS95_01065 PF00166 Chaperonin 10 Kd subunit JHS95_01070 PF00118 TCP-1/cpn60 chaperonin family JHS95_01080 PF02308 MgtC family JHS95_01085 PF01168 Alanine racemase, N-terminal domain JHS95_01085 PF00842 Alanine racemase, C-terminal domain JHS95_01090 PF04055 Radical SAM superfamily JHS95_01095 PF09285 Elongation factor P, C-terminal JHS95_01095 PF01132 Elongation factor P (EF-P) OB domain JHS95_01095 PF08207 Elongation factor P (EF-P) KOW-like domain JHS95_01105 PF02313 Fumarate reductase subunit D JHS95_01110 PF02300 Fumarate reductase subunit C JHS95_01115 PF13085 2Fe-2S iron-sulfur cluster binding domain JHS95_01115 PF13183 4Fe-4S dicluster domain JHS95_01120 PF00890 FAD binding domain JHS95_01120 PF02910 Fumarate reductase flavoprotein C-term JHS95_01125 PF00152 tRNA synthetases class II (D, K and N) JHS95_01135 PF00440 Bacterial regulatory proteins, tetR family JHS95_01135 PF08360 QacR-like protein, C-terminal region JHS95_01145 PF01551 Peptidase family M23 JHS95_01150 PF00132 Bacterial transferase hexapeptide (six repeats) JHS95_01150 PF06426 Serine acetyltransferase, N-terminal JHS95_01155 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JHS95_01155 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JHS95_01160 PF02556 Preprotein translocase subunit SecB JHS95_01165 PF00581 Rhodanese-like domain JHS95_01170 PF06415 BPG-independent PGAM N-terminus (iPGM_N) JHS95_01170 PF01676 Metalloenzyme superfamily JHS95_01180 PF00672 HAMP domain JHS95_01180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS95_01185 PF00939 Sodium:sulfate symporter transmembrane region JHS95_01190 PF02666 Phosphatidylserine decarboxylase JHS95_01195 PF03193 RsgA GTPase JHS95_01200 PF00929 Exonuclease JHS95_01270 PF08331 Domain of unknown function (DUF1730) JHS95_01275 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE JHS95_01280 PF01520 N-acetylmuramoyl-L-alanine amidase JHS95_01285 PF08676 MutL C terminal dimerisation domain JHS95_01285 PF01119 DNA mismatch repair protein, C-terminal domain JHS95_01295 PF17209 Hfq protein JHS95_01300 PF13167 GTP-binding GTPase N-terminal JHS95_01300 PF16360 GTP-binding GTPase Middle Region JHS95_01300 PF01926 50S ribosome-binding GTPase JHS95_01305 PF12221 Bacterial membrane protein N terminal JHS95_01305 PF01145 SPFH domain / Band 7 family JHS95_01310 PF01145 SPFH domain / Band 7 family JHS95_01315 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) JHS95_01320 PF00709 Adenylosuccinate synthetase JHS95_01325 PF08238 Sel1 repeat JHS95_01330 PF00970 Oxidoreductase FAD-binding domain JHS95_01330 PF00042 Globin JHS95_01330 PF00175 Oxidoreductase NAD-binding domain JHS95_01335 PF02082 Transcriptional regulator JHS95_01340 PF08461 Ribonuclease R winged-helix domain JHS95_01340 PF08206 Ribonuclease B OB domain JHS95_01340 PF00773 RNB domain JHS95_01340 PF00575 S1 RNA binding domain JHS95_01340 PF17876 Cold shock domain JHS95_01345 PF00588 SpoU rRNA Methylase family JHS95_01345 PF08032 RNA 2'-O ribose methyltransferase substrate binding JHS95_01350 PF13419 Haloacid dehalogenase-like hydrolase JHS95_01355 PF00579 tRNA synthetases class I (W and Y) JHS95_01370 PF00117 Glutamine amidotransferase class-I JHS95_01375 PF00202 Aminotransferase class-III JHS95_01380 PF04958 Arginine N-succinyltransferase beta subunit JHS95_01385 PF00171 Aldehyde dehydrogenase family JHS95_01395 PF13545 Crp-like helix-turn-helix domain JHS95_01395 PF00027 Cyclic nucleotide-binding domain JHS95_01400 PF00485 Phosphoribulokinase / Uridine kinase family JHS95_01405 PF06794 Uncharacterised protein family (UPF0270) JHS95_01410 PF00561 alpha/beta hydrolase fold JHS95_01420 PF00005 ABC transporter JHS95_01420 PF12848 ABC transporter JHS95_01425 PF02525 Flavodoxin-like fold JHS95_01430 PF00999 Sodium/hydrogen exchanger family JHS95_01430 PF02254 TrkA-N domain JHS95_01440 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JHS95_01445 PF01112 Asparaginase JHS95_01450 PF04102 SlyX JHS95_01460 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JHS95_01460 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JHS95_01465 PF13309 HTH domain JHS95_01465 PF08348 YheO-like PAS domain JHS95_01470 PF02635 DsrE/DsrF-like family JHS95_01475 PF02635 DsrE/DsrF-like family JHS95_01480 PF04077 DsrH like protein JHS95_01485 PF00164 Ribosomal protein S12/S23 JHS95_01490 PF00177 Ribosomal protein S7p/S5e JHS95_01495 PF00679 Elongation factor G C-terminus JHS95_01495 PF14492 Elongation Factor G, domain II JHS95_01495 PF03764 Elongation factor G, domain IV JHS95_01495 PF03144 Elongation factor Tu domain 2 JHS95_01495 PF00009 Elongation factor Tu GTP binding domain JHS95_01500 PF03144 Elongation factor Tu domain 2 JHS95_01500 PF03143 Elongation factor Tu C-terminal domain JHS95_01500 PF00009 Elongation factor Tu GTP binding domain JHS95_01505 PF04324 BFD-like [2Fe-2S] binding domain JHS95_01510 PF00210 Ferritin-like domain JHS95_01515 PF00390 Malic enzyme, N-terminal domain JHS95_01515 PF03949 Malic enzyme, NAD binding domain JHS95_01520 PF01340 Met Apo-repressor, MetJ JHS95_01525 PF01053 Cys/Met metabolism PLP-dependent enzyme JHS95_01530 PF00696 Amino acid kinase family JHS95_01530 PF00742 Homoserine dehydrogenase JHS95_01530 PF03447 Homoserine dehydrogenase, NAD binding domain JHS95_01535 PF02219 Methylenetetrahydrofolate reductase JHS95_01545 PF00311 Phosphoenolpyruvate carboxylase JHS95_01550 PF07687 Peptidase dimerisation domain JHS95_01550 PF01546 Peptidase family M20/M25/M40 JHS95_01555 PF01118 Semialdehyde dehydrogenase, NAD binding domain JHS95_01555 PF02774 Semialdehyde dehydrogenase, dimerisation domain JHS95_01560 PF00696 Amino acid kinase family JHS95_01565 PF00764 Arginosuccinate synthase JHS95_01570 PF00583 Acetyltransferase (GNAT) family JHS95_01570 PF14698 Argininosuccinate lyase C-terminal JHS95_01570 PF00206 Lyase JHS95_01580 PF00462 Glutaredoxin JHS95_01580 PF08534 Redoxin JHS95_01585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_01585 PF03466 LysR substrate binding domain JHS95_01590 PF17092 Penicillin-binding protein OB-like domain JHS95_01590 PF00912 Transglycosylase JHS95_01590 PF00905 Penicillin binding protein transpeptidase domain JHS95_01600 PF05137 Fimbrial assembly protein (PilN) JHS95_01610 PF04351 Pilus assembly protein, PilP JHS95_01615 PF07660 Secretin and TonB N terminus short domain JHS95_01615 PF03958 Bacterial type II/III secretion system short domain JHS95_01615 PF11741 AMIN domain JHS95_01615 PF00263 Bacterial type II and III secretion system protein JHS95_01620 PF01202 Shikimate kinase JHS95_01625 PF01761 3-dehydroquinate synthase JHS95_01635 PF02086 D12 class N6 adenine-specific DNA methyltransferase JHS95_01640 PF00834 Ribulose-phosphate 3 epimerase family JHS95_01645 PF01250 Ribosomal protein S6 JHS95_01650 PF00436 Single-strand binding protein family JHS95_01655 PF01084 Ribosomal protein S18 JHS95_01660 PF01281 Ribosomal protein L9, N-terminal domain JHS95_01660 PF03948 Ribosomal protein L9, C-terminal domain JHS95_01670 PF00772 DnaB-like helicase N terminal domain JHS95_01670 PF03796 DnaB-like helicase C terminal domain JHS95_01675 PF00842 Alanine racemase, C-terminal domain JHS95_01675 PF01168 Alanine racemase, N-terminal domain JHS95_01685 PF01894 Uncharacterised protein family UPF0047 JHS95_01690 PF00342 Phosphoglucose isomerase JHS95_01700 PF01475 Ferric uptake regulator family JHS95_01705 PF01207 Dihydrouridine synthase (Dus) JHS95_01725 PF00175 Oxidoreductase NAD-binding domain JHS95_01725 PF00667 FAD binding domain JHS95_01725 PF00258 Flavodoxin JHS95_01730 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JHS95_01730 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JHS95_01735 PF01507 Phosphoadenosine phosphosulfate reductase family JHS95_01795 PF13358 DDE superfamily endonuclease JHS95_01805 PF00999 Sodium/hydrogen exchanger family JHS95_01810 PF02574 Homocysteine S-methyltransferase JHS95_01810 PF00809 Pterin binding enzyme JHS95_01810 PF02965 Vitamin B12 dependent methionine synthase, activation domain JHS95_01810 PF02607 B12 binding domain JHS95_01810 PF02310 B12 binding domain JHS95_01815 PF01842 ACT domain JHS95_01815 PF00696 Amino acid kinase family JHS95_01820 PF00266 Aminotransferase class-V JHS95_01830 PF17760 UvrA interaction domain JHS95_01830 PF17755 UvrA DNA-binding domain JHS95_01830 PF00005 ABC transporter JHS95_01835 PF00483 Nucleotidyl transferase JHS95_01840 PF00196 Bacterial regulatory proteins, luxR family JHS95_01845 PF00436 Single-strand binding protein family JHS95_01850 PF00563 EAL domain JHS95_01850 PF17157 Gammaproteobacterial periplasmic sensor domain JHS95_01850 PF00990 Diguanylate cyclase, GGDEF domain JHS95_01870 PF11741 AMIN domain JHS95_01870 PF00263 Bacterial type II and III secretion system protein JHS95_01870 PF03958 Bacterial type II/III secretion system short domain JHS95_01870 PF07660 Secretin and TonB N terminus short domain JHS95_01875 PF01471 Putative peptidoglycan binding domain JHS95_01875 PF13401 AAA domain JHS95_01885 PF00437 Type II/IV secretion system protein JHS95_01885 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JHS95_01890 PF00482 Type II secretion system (T2SS), protein F JHS95_01900 PF07963 Prokaryotic N-terminal methylation motif JHS95_01940 PF04085 rod shape-determining protein MreC JHS95_01945 PF04093 rod shape-determining protein MreD JHS95_01950 PF02545 Maf-like protein JHS95_01955 PF10150 Ribonuclease E/G family JHS95_01955 PF00575 S1 RNA binding domain JHS95_01960 PF13502 AsmA-like C-terminal region JHS95_01960 PF13116 Protein of unknown function JHS95_01965 PF00795 Carbon-nitrogen hydrolase JHS95_01970 PF01523 Putative modulator of DNA gyrase JHS95_01975 PF02562 PhoH-like protein JHS95_01975 PF13638 PIN domain JHS95_01980 PF18339 RapA N-terminal Tudor like domain 1 JHS95_01980 PF00271 Helicase conserved C-terminal domain JHS95_01980 PF00176 SNF2 family N-terminal domain JHS95_01980 PF12137 RNA polymerase recycling family C-terminal JHS95_01980 PF18337 RapA N-terminal Tudor like domain JHS95_01990 PF00849 RNA pseudouridylate synthase JHS95_01995 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JHS95_01995 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JHS95_02000 PF04751 Protein of unknown function (DUF615) JHS95_02005 PF01523 Putative modulator of DNA gyrase JHS95_02010 PF01769 Divalent cation transporter JHS95_02010 PF03448 MgtE intracellular N domain JHS95_02010 PF00571 CBS domain JHS95_02015 PF00381 PTS HPr component phosphorylation site JHS95_02020 PF03668 P-loop ATPase protein family JHS95_02025 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JHS95_02030 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JHS95_02035 PF00309 Sigma-54 factor, Activator interacting domain (AID) JHS95_02035 PF04963 Sigma-54 factor, core binding domain JHS95_02035 PF04552 Sigma-54, DNA binding domain JHS95_02040 PF00005 ABC transporter JHS95_02040 PF12399 Branched-chain amino acid ATP-binding cassette transporter JHS95_02045 PF03968 OstA-like protein JHS95_02055 PF00571 CBS domain JHS95_02055 PF01380 SIS domain JHS95_02060 PF01699 Sodium/calcium exchanger protein JHS95_02065 PF00005 ABC transporter JHS95_02070 PF02405 Permease MlaE JHS95_02075 PF02470 MlaD protein JHS95_02080 PF05494 MlaC protein JHS95_02090 PF01722 BolA-like protein JHS95_02095 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JHS95_02100 PF01553 Acyltransferase JHS95_02105 PF01042 Endoribonuclease L-PSP JHS95_02110 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain JHS95_02110 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain JHS95_02115 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JHS95_02115 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JHS95_02125 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JHS95_02125 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JHS95_02135 PF06877 Regulator of ribonuclease activity B JHS95_02145 PF00583 Acetyltransferase (GNAT) family JHS95_02155 PF08264 Anticodon-binding domain of tRNA JHS95_02155 PF10458 Valyl tRNA synthetase tRNA binding arm JHS95_02155 PF00133 tRNA synthetases class I (I, L, M and V) JHS95_02160 PF04364 DNA polymerase III chi subunit, HolC JHS95_02165 PF02789 Cytosol aminopeptidase family, N-terminal domain JHS95_02165 PF00883 Cytosol aminopeptidase family, catalytic domain JHS95_02170 PF03739 Lipopolysaccharide export system permease LptF/LptG JHS95_02175 PF03739 Lipopolysaccharide export system permease LptF/LptG JHS95_02185 PF10011 Predicted membrane protein (DUF2254) JHS95_02190 PF00106 short chain dehydrogenase JHS95_02200 PF08360 QacR-like protein, C-terminal region JHS95_02200 PF00440 Bacterial regulatory proteins, tetR family JHS95_02210 PF13533 Biotin-lipoyl like JHS95_02220 PF01522 Polysaccharide deacetylase JHS95_02225 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JHS95_02230 PF02378 Phosphotransferase system, EIIC JHS95_02235 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit JHS95_02240 PF02056 Family 4 glycosyl hydrolase JHS95_02240 PF11975 Family 4 glycosyl hydrolase C-terminal domain JHS95_02245 PF04794 YdjC-like protein JHS95_02250 PF00356 Bacterial regulatory proteins, lacI family JHS95_02250 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JHS95_02255 PF00072 Response regulator receiver domain JHS95_02300 PF00171 Aldehyde dehydrogenase family JHS95_02330 PF17200 Single Cache domain 2 JHS95_02330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS95_02330 PF00672 HAMP domain JHS95_02370 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain JHS95_02370 PF01464 Transglycosylase SLT domain JHS95_02375 PF04362 Bacterial Fe(2+) trafficking JHS95_02380 PF00633 Helix-hairpin-helix motif JHS95_02380 PF00730 HhH-GPD superfamily base excision DNA repair protein JHS95_02380 PF14815 NUDIX domain JHS95_02385 PF02390 Putative methyltransferase JHS95_02390 PF02086 D12 class N6 adenine-specific DNA methyltransferase JHS95_02395 PF04960 Glutaminase JHS95_02400 PF04055 Radical SAM superfamily JHS95_02400 PF06969 HemN C-terminal domain JHS95_02405 PF01725 Ham1 family JHS95_02415 PF02594 Uncharacterised ACR, YggU family COG1872 JHS95_02420 PF02325 YGGT family JHS95_02425 PF14748 Pyrroline-5-carboxylate reductase dimerisation JHS95_02425 PF03807 NADP oxidoreductase coenzyme F420-dependent JHS95_02430 PF01168 Alanine racemase, N-terminal domain JHS95_02435 PF00437 Type II/IV secretion system protein JHS95_02440 PF00437 Type II/IV secretion system protein JHS95_02445 PF03652 Holliday junction resolvase JHS95_02450 PF02622 Uncharacterized ACR, COG1678 JHS95_02455 PF02951 Prokaryotic glutathione synthetase, N-terminal domain JHS95_02455 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain JHS95_02460 PF04452 RNA methyltransferase JHS95_02465 PF04231 Endonuclease I JHS95_02470 PF10263 SprT-like family JHS95_02470 PF17283 SprT-like zinc ribbon domain JHS95_02480 PF02772 S-adenosylmethionine synthetase, central domain JHS95_02480 PF02773 S-adenosylmethionine synthetase, C-terminal domain JHS95_02480 PF00438 S-adenosylmethionine synthetase, N-terminal domain JHS95_02485 PF00456 Transketolase, thiamine diphosphate binding domain JHS95_02485 PF02779 Transketolase, pyrimidine binding domain JHS95_02485 PF02780 Transketolase, C-terminal domain JHS95_02490 PF03466 LysR substrate binding domain JHS95_02490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_02495 PF07715 TonB-dependent Receptor Plug Domain JHS95_02495 PF00593 TonB dependent receptor JHS95_02500 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JHS95_02500 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JHS95_02505 PF00162 Phosphoglycerate kinase JHS95_02510 PF01116 Fructose-bisphosphate aldolase class-II JHS95_02515 PF00924 Mechanosensitive ion channel JHS95_02515 PF05552 Conserved TM helix JHS95_02520 PF04073 Aminoacyl-tRNA editing domain JHS95_02525 PF01810 LysE type translocator JHS95_02530 PF03466 LysR substrate binding domain JHS95_02530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_02535 PF04402 Protein of unknown function (DUF541) JHS95_02540 PF01842 ACT domain JHS95_02540 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JHS95_02540 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JHS95_02545 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) JHS95_02550 PF01812 5-formyltetrahydrofolate cyclo-ligase family JHS95_02560 PF05164 Cell division protein ZapA JHS95_02565 PF03695 Uncharacterised protein family (UPF0149) JHS95_02570 PF01494 FAD binding domain JHS95_02575 PF01494 FAD binding domain JHS95_02590 PF01571 Aminomethyltransferase folate-binding domain JHS95_02595 PF03937 Flavinator of succinate dehydrogenase JHS95_02600 PF00890 FAD binding domain JHS95_02600 PF02910 Fumarate reductase flavoprotein C-term JHS95_02605 PF04542 Sigma-70 region 2 JHS95_02605 PF08281 Sigma-70, region 4 JHS95_02610 PF03872 Anti sigma-E protein RseA, N-terminal domain JHS95_02610 PF03873 Anti sigma-E protein RseA, C-terminal domain JHS95_02615 PF03888 MucB/RseB N-terminal domain JHS95_02615 PF17188 MucB/RseB C-terminal domain JHS95_02625 PF00679 Elongation factor G C-terminus JHS95_02625 PF00009 Elongation factor Tu GTP binding domain JHS95_02625 PF03144 Elongation factor Tu domain 2 JHS95_02625 PF06421 GTP-binding protein LepA C-terminus JHS95_02630 PF10502 Signal peptidase, peptidase S26 JHS95_02635 PF00035 Double-stranded RNA binding motif JHS95_02635 PF14622 Ribonuclease-III-like JHS95_02640 PF07650 KH domain JHS95_02640 PF01926 50S ribosome-binding GTPase JHS95_02645 PF11967 Recombination protein O N terminal JHS95_02645 PF02565 Recombination protein O C terminal JHS95_02650 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ JHS95_02655 PF01648 4'-phosphopantetheinyl transferase superfamily JHS95_02660 PF00672 HAMP domain JHS95_02660 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JHS95_02660 PF01627 Hpt domain JHS95_02660 PF00512 His Kinase A (phospho-acceptor) domain JHS95_02660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_02660 PF00072 Response regulator receiver domain JHS95_02665 PF01938 TRAM domain JHS95_02665 PF05958 tRNA (Uracil-5-)-methyltransferase JHS95_02670 PF13291 ACT domain JHS95_02670 PF04607 Region found in RelA / SpoT proteins JHS95_02670 PF02824 TGS domain JHS95_02675 PF03819 MazG nucleotide pyrophosphohydrolase domain JHS95_02680 PF06418 CTP synthase N-terminus JHS95_02680 PF00117 Glutamine amidotransferase class-I JHS95_02685 PF03952 Enolase, N-terminal domain JHS95_02685 PF00113 Enolase, C-terminal TIM barrel domain JHS95_02690 PF04977 Septum formation initiator JHS95_02695 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase JHS95_02700 PF02542 YgbB family JHS95_02705 PF01142 tRNA pseudouridine synthase D (TruD) JHS95_02710 PF01975 Survival protein SurE JHS95_02720 PF01476 LysM domain JHS95_02720 PF01551 Peptidase family M23 JHS95_02725 PF04542 Sigma-70 region 2 JHS95_02725 PF00140 Sigma-70 factor, region 1.2 JHS95_02725 PF04545 Sigma-70, region 4 JHS95_02725 PF04539 Sigma-70 region 3 JHS95_02730 PF00488 MutS domain V JHS95_02730 PF01624 MutS domain I JHS95_02730 PF05188 MutS domain II JHS95_02730 PF05192 MutS domain III JHS95_02730 PF05190 MutS family domain IV JHS95_02735 PF02464 Competence-damaged protein JHS95_02740 PF00154 recA bacterial DNA recombination protein JHS95_02745 PF02631 RecX family JHS95_02750 PF01411 tRNA synthetases class II (A) JHS95_02750 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JHS95_02750 PF02272 DHHA1 domain JHS95_02755 PF00696 Amino acid kinase family JHS95_02755 PF01842 ACT domain JHS95_02755 PF13840 ACT domain JHS95_02760 PF02599 Global regulator protein family JHS95_02815 PF04277 Oxaloacetate decarboxylase, gamma chain JHS95_02820 PF00682 HMGL-like JHS95_02820 PF02436 Conserved carboxylase domain JHS95_02820 PF00364 Biotin-requiring enzyme JHS95_02825 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit JHS95_02830 PF00107 Zinc-binding dehydrogenase JHS95_02830 PF08240 Alcohol dehydrogenase GroES-like domain JHS95_02835 PF09335 SNARE associated Golgi protein JHS95_02840 PF00675 Insulinase (Peptidase family M16) JHS95_02840 PF05193 Peptidase M16 inactive domain JHS95_02845 PF04262 Glutamate-cysteine ligase JHS95_02855 PF02664 S-Ribosylhomocysteinase (LuxS) JHS95_02860 PF03471 Transporter associated domain JHS95_02860 PF00571 CBS domain JHS95_02860 PF01595 Cyclin M transmembrane N-terminal domain JHS95_02865 PF01578 Cytochrome C assembly protein JHS95_02870 PF00448 SRP54-type protein, GTPase domain JHS95_02870 PF02881 SRP54-type protein, helical bundle domain JHS95_02870 PF02978 Signal peptide binding domain JHS95_02875 PF00886 Ribosomal protein S16 JHS95_02880 PF05239 PRC-barrel domain JHS95_02880 PF01782 RimM N-terminal domain JHS95_02885 PF01746 tRNA (Guanine-1)-methyltransferase JHS95_02890 PF01245 Ribosomal protein L19 JHS95_02895 PF03884 DNA gyrase inhibitor YacG JHS95_02900 PF07072 Cell division protein JHS95_02905 PF01121 Dephospho-CoA kinase JHS95_02910 PF06750 Bacterial Peptidase A24 N-terminal domain JHS95_02910 PF01478 Type IV leader peptidase family JHS95_02915 PF00482 Type II secretion system (T2SS), protein F JHS95_02920 PF00437 Type II/IV secretion system protein JHS95_02920 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JHS95_02925 PF07963 Prokaryotic N-terminal methylation motif JHS95_02925 PF00114 Pilin (bacterial filament) JHS95_02930 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain JHS95_02930 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain JHS95_02935 PF01510 N-acetylmuramoyl-L-alanine amidase JHS95_02940 PF00392 Bacterial regulatory proteins, gntR family JHS95_02940 PF07729 FCD domain JHS95_02945 PF00456 Transketolase, thiamine diphosphate binding domain JHS95_02945 PF17831 Pyruvate dehydrogenase E1 component middle domain JHS95_02950 PF00364 Biotin-requiring enzyme JHS95_02950 PF02817 e3 binding domain JHS95_02950 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JHS95_02955 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS95_02955 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JHS95_02960 PF00440 Bacterial regulatory proteins, tetR family JHS95_02965 PF00156 Phosphoribosyl transferase domain JHS95_02970 PF00484 Carbonic anhydrase JHS95_02975 PF01740 STAS domain JHS95_02975 PF00916 Sulfate permease family JHS95_02980 PF00005 ABC transporter JHS95_02985 PF01061 ABC-2 type transporter JHS95_02990 PF03279 Bacterial lipid A biosynthesis acyltransferase JHS95_02995 PF02569 Pantoate-beta-alanine ligase JHS95_03000 PF02548 Ketopantoate hydroxymethyltransferase JHS95_03005 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JHS95_03010 PF01743 Poly A polymerase head domain JHS95_03010 PF12626 Polymerase A arginine-rich C-terminus JHS95_03010 PF12627 Probable RNA and SrmB- binding site of polymerase A JHS95_03015 PF00749 tRNA synthetases class I (E and Q), catalytic domain JHS95_03020 PF01258 Prokaryotic dksA/traR C4-type zinc finger JHS95_03025 PF03749 Sugar fermentation stimulation protein RE domain JHS95_03025 PF17746 SfsA N-terminal OB domain JHS95_03030 PF00270 DEAD/DEAH box helicase JHS95_03030 PF04408 Helicase associated domain (HA2) JHS95_03030 PF00271 Helicase conserved C-terminal domain JHS95_03030 PF08482 ATP-dependent helicase C-terminal JHS95_03035 PF00912 Transglycosylase JHS95_03035 PF00905 Penicillin binding protein transpeptidase domain JHS95_03035 PF14814 Bifunctional transglycosylase second domain JHS95_03040 PF01734 Patatin-like phospholipase JHS95_03045 PF00330 Aconitase family (aconitate hydratase) JHS95_03045 PF11791 Aconitate B N-terminal domain JHS95_03045 PF06434 Aconitate hydratase 2 N-terminus JHS95_03050 PF06062 Uncharacterised protein family (UPF0231) JHS95_03055 PF00543 Nitrogen regulatory protein P-II JHS95_03060 PF00909 Ammonium Transporter Family JHS95_03065 PF13416 Bacterial extracellular solute-binding protein JHS95_03075 PF00005 ABC transporter JHS95_03075 PF08402 TOBE domain JHS95_03080 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JHS95_03080 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JHS95_03080 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JHS95_03080 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JHS95_03085 PF06165 Glycosyltransferase family 36 JHS95_03085 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain JHS95_03090 PF02838 Glycosyl hydrolase family 20, domain 2 JHS95_03090 PF00728 Glycosyl hydrolase family 20, catalytic domain JHS95_03095 PF01869 BadF/BadG/BcrA/BcrD ATPase family JHS95_03105 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS95_03105 PF00005 ABC transporter JHS95_03110 PF00005 ABC transporter JHS95_03110 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS95_03115 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_03115 PF12911 N-terminal TM domain of oligopeptide transport permease C JHS95_03120 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_03125 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JHS95_03130 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS95_03130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_03130 PF00512 His Kinase A (phospho-acceptor) domain JHS95_03130 PF00072 Response regulator receiver domain JHS95_03135 PF05175 Methyltransferase small domain JHS95_03135 PF08468 Methyltransferase small domain N-terminal JHS95_03140 PF01594 AI-2E family transporter JHS95_03145 PF00202 Aminotransferase class-III JHS95_03150 PF01521 Iron-sulphur cluster biosynthesis JHS95_03160 PF00873 AcrB/AcrD/AcrF family JHS95_03165 PF01476 LysM domain JHS95_03165 PF01551 Peptidase family M23 JHS95_03165 PF08525 Opacity-associated protein A N-terminal motif JHS95_03170 PF00579 tRNA synthetases class I (W and Y) JHS95_03180 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family JHS95_03185 PF13609 Gram-negative porin JHS95_03190 PF01272 Transcription elongation factor, GreA/GreB, C-term JHS95_03190 PF03449 Transcription elongation factor, N-terminal JHS95_03195 PF01985 CRS1 / YhbY (CRM) domain JHS95_03200 PF01728 FtsJ-like methyltransferase JHS95_03205 PF00004 ATPase family associated with various cellular activities (AAA) JHS95_03205 PF06480 FtsH Extracellular JHS95_03205 PF17862 AAA+ lid domain JHS95_03205 PF01434 Peptidase family M41 JHS95_03210 PF00809 Pterin binding enzyme JHS95_03215 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JHS95_03215 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JHS95_03215 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JHS95_03215 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JHS95_03220 PF03840 Preprotein translocase SecG subunit JHS95_03235 PF02576 RimP N-terminal domain JHS95_03235 PF17384 RimP C-terminal SH3 domain JHS95_03240 PF00575 S1 RNA binding domain JHS95_03240 PF08529 NusA N-terminal domain JHS95_03240 PF13184 NusA-like KH domain JHS95_03245 PF04760 Translation initiation factor IF-2, N-terminal region JHS95_03245 PF00009 Elongation factor Tu GTP binding domain JHS95_03245 PF11987 Translation-initiation factor 2 JHS95_03245 PF08364 Bacterial translation initiation factor IF-2 associated region JHS95_03250 PF02033 Ribosome-binding factor A JHS95_03255 PF09157 Pseudouridine synthase II TruB, C-terminal JHS95_03255 PF16198 tRNA pseudouridylate synthase B C-terminal domain JHS95_03255 PF01509 TruB family pseudouridylate synthase (N terminal domain) JHS95_03260 PF00312 Ribosomal protein S15 JHS95_03265 PF01138 3' exoribonuclease family, domain 1 JHS95_03265 PF00013 KH domain JHS95_03265 PF00575 S1 RNA binding domain JHS95_03265 PF03725 3' exoribonuclease family, domain 2 JHS95_03265 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JHS95_03270 PF13181 Tetratricopeptide repeat JHS95_03270 PF07719 Tetratricopeptide repeat JHS95_03280 PF01554 MatE JHS95_03285 PF01136 Peptidase family U32 JHS95_03290 PF01136 Peptidase family U32 JHS95_03295 PF03707 Bacterial signalling protein N terminal repeat JHS95_03295 PF00990 Diguanylate cyclase, GGDEF domain JHS95_03295 PF00563 EAL domain JHS95_03300 PF02036 SCP-2 sterol transfer family JHS95_03305 PF13508 Acetyltransferase (GNAT) domain JHS95_03325 PF00009 Elongation factor Tu GTP binding domain JHS95_03325 PF16658 Class II release factor RF3, C-terminal domain JHS95_03325 PF03144 Elongation factor Tu domain 2 JHS95_03335 PF01026 TatD related DNase JHS95_03340 PF01773 Na+ dependent nucleoside transporter N-terminus JHS95_03340 PF07662 Na+ dependent nucleoside transporter C-terminus JHS95_03340 PF07670 Nucleoside recognition JHS95_03345 PF01791 DeoC/LacD family aldolase JHS95_03350 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain JHS95_03350 PF02885 Glycosyl transferase family, helical bundle domain JHS95_03350 PF00591 Glycosyl transferase family, a/b domain JHS95_03355 PF01676 Metalloenzyme superfamily JHS95_03360 PF01048 Phosphorylase superfamily JHS95_03370 PF18429 Domain of unknown function (DUF5609) JHS95_03380 PF18073 Rubredoxin metal binding domain JHS95_03385 PF00679 Elongation factor G C-terminus JHS95_03385 PF14492 Elongation Factor G, domain II JHS95_03385 PF03764 Elongation factor G, domain IV JHS95_03385 PF03144 Elongation factor Tu domain 2 JHS95_03385 PF00009 Elongation factor Tu GTP binding domain JHS95_03390 PF03466 LysR substrate binding domain JHS95_03390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_03400 PF00501 AMP-binding enzyme JHS95_03430 PF00196 Bacterial regulatory proteins, luxR family JHS95_03440 PF03466 LysR substrate binding domain JHS95_03440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_03445 PF13520 Amino acid permease JHS95_03450 PF04074 YhcH/YjgK/YiaL JHS95_03455 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JHS95_03455 PF02837 Glycosyl hydrolases family 2, sugar binding domain JHS95_03455 PF00703 Glycosyl hydrolases family 2 JHS95_03455 PF16353 Domain of unknown function(DUF4981) JHS95_03455 PF02929 Beta galactosidase small chain JHS95_03460 PF00356 Bacterial regulatory proteins, lacI family JHS95_03465 PF16363 GDP-mannose 4,6 dehydratase JHS95_03470 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain JHS95_03470 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain JHS95_03475 PF10509 Galactokinase galactose-binding signature JHS95_03475 PF08544 GHMP kinases C terminal JHS95_03475 PF00288 GHMP kinases N terminal domain JHS95_03480 PF01263 Aldose 1-epimerase JHS95_03485 PF00474 Sodium:solute symporter family JHS95_03495 PF00929 Exonuclease JHS95_03495 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JHS95_03495 PF14579 Helix-hairpin-helix motif JHS95_03495 PF07733 Bacterial DNA polymerase III alpha NTPase domain JHS95_03495 PF02811 PHP domain JHS95_03500 PF00356 Bacterial regulatory proteins, lacI family JHS95_03505 PF01588 Putative tRNA binding domain JHS95_03525 PF01544 CorA-like Mg2+ transporter protein JHS95_03530 PF16901 C-terminal domain of alpha-glycerophosphate oxidase JHS95_03530 PF01266 FAD dependent oxidoreductase JHS95_03535 PF08220 DeoR-like helix-turn-helix domain JHS95_03535 PF00455 DeoR C terminal sensor domain JHS95_03540 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JHS95_03540 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JHS95_03545 PF00230 Major intrinsic protein JHS95_03550 PF07690 Major Facilitator Superfamily JHS95_03555 PF03009 Glycerophosphoryl diester phosphodiesterase family JHS95_03560 PF14602 Hexapeptide repeat of succinyl-transferase JHS95_03560 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle JHS95_03565 PF07130 YebG protein JHS95_03570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_03570 PF03466 LysR substrate binding domain JHS95_03580 PF11893 Domain of unknown function (DUF3413) JHS95_03580 PF00884 Sulfatase JHS95_03585 PF17946 RecC C-terminal domain JHS95_03590 PF12705 PD-(D/E)XK nuclease superfamily JHS95_03590 PF00580 UvrD/REP helicase N-terminal domain JHS95_03590 PF13361 UvrD-like helicase C-terminal domain JHS95_03595 PF13538 UvrD-like helicase C-terminal domain JHS95_03605 PF00696 Amino acid kinase family JHS95_03605 PF00583 Acetyltransferase (GNAT) family JHS95_03615 PF06725 3D domain JHS95_03615 PF03562 MltA specific insert domain JHS95_03620 PF00899 ThiF family JHS95_03625 PF02657 Fe-S metabolism associated domain JHS95_03630 PF00990 Diguanylate cyclase, GGDEF domain JHS95_03630 PF17158 Membrane-associated sensor, integral membrane domain JHS95_03635 PF00266 Aminotransferase class-V JHS95_03640 PF01965 DJ-1/PfpI family JHS95_03645 PF08546 Ketopantoate reductase PanE/ApbA C terminal JHS95_03645 PF02558 Ketopantoate reductase PanE/ApbA JHS95_03650 PF03502 Nucleoside-specific channel-forming protein, Tsx JHS95_03665 PF04545 Sigma-70, region 4 JHS95_03665 PF04542 Sigma-70 region 2 JHS95_03675 PF07690 Major Facilitator Superfamily JHS95_03680 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JHS95_03685 PF03923 Uncharacterized lipoprotein JHS95_03685 PF08139 Prokaryotic membrane lipoprotein lipid attachment site JHS95_03690 PF05175 Methyltransferase small domain JHS95_03695 PF01722 BolA-like protein JHS95_03700 PF11973 NQRA C-terminal domain JHS95_03700 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) JHS95_03705 PF03116 NQR2, RnfD, RnfE family JHS95_03710 PF04205 FMN-binding domain JHS95_03715 PF02508 Rnf-Nqr subunit, membrane protein JHS95_03720 PF02508 Rnf-Nqr subunit, membrane protein JHS95_03725 PF00970 Oxidoreductase FAD-binding domain JHS95_03725 PF00111 2Fe-2S iron-sulfur cluster binding domain JHS95_03725 PF00175 Oxidoreductase NAD-binding domain JHS95_03730 PF02424 ApbE family JHS95_03745 PF11798 IMS family HHH motif JHS95_03745 PF11799 impB/mucB/samB family C-terminal domain JHS95_03745 PF00817 impB/mucB/samB family JHS95_03750 PF00570 HRDC domain JHS95_03750 PF09382 RQC domain JHS95_03750 PF00270 DEAD/DEAH box helicase JHS95_03750 PF00271 Helicase conserved C-terminal domain JHS95_03750 PF16124 RecQ zinc-binding JHS95_03755 PF03449 Transcription elongation factor, N-terminal JHS95_03755 PF01272 Transcription elongation factor, GreA/GreB, C-term JHS95_03770 PF00209 Sodium:neurotransmitter symporter family JHS95_03780 PF06786 Uncharacterised protein family (UPF0253) JHS95_03790 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JHS95_03790 PF03129 Anticodon binding domain JHS95_03790 PF04073 Aminoacyl-tRNA editing domain JHS95_03795 PF01980 tRNA-methyltransferase O JHS95_03795 PF18389 TrmO C-terminal domain JHS95_03800 PF01197 Ribosomal protein L31 JHS95_03805 PF00444 Ribosomal protein L36 JHS95_03810 PF03806 AbgT putative transporter family JHS95_03815 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 JHS95_03840 PF04287 tRNA pseudouridine synthase C JHS95_03845 PF00849 RNA pseudouridylate synthase JHS95_03850 PF11944 Protein of unknown function (DUF3461) JHS95_03855 PF01909 Nucleotidyltransferase domain JHS95_03855 PF01966 HD domain JHS95_03855 PF08335 GlnD PII-uridylyltransferase JHS95_03855 PF01842 ACT domain JHS95_03860 PF00557 Metallopeptidase family M24 JHS95_03865 PF00318 Ribosomal protein S2 JHS95_03870 PF00889 Elongation factor TS JHS95_03875 PF00696 Amino acid kinase family JHS95_03880 PF01765 Ribosome recycling factor JHS95_03885 PF01255 Putative undecaprenyl diphosphate synthase JHS95_03895 PF13288 DXP reductoisomerase C-terminal domain JHS95_03895 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase JHS95_03895 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain JHS95_03900 PF17820 PDZ domain JHS95_03900 PF02163 Peptidase family M50 JHS95_03905 PF01103 Surface antigen JHS95_03905 PF07244 Surface antigen variable number repeat JHS95_03910 PF03938 Outer membrane protein (OmpH-like) JHS95_03915 PF00132 Bacterial transferase hexapeptide (six repeats) JHS95_03915 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD JHS95_03920 PF07977 FabA-like domain JHS95_03925 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 JHS95_03925 PF00132 Bacterial transferase hexapeptide (six repeats) JHS95_03930 PF02684 Lipid-A-disaccharide synthetase JHS95_03935 PF01351 Ribonuclease HII JHS95_03940 PF02811 PHP domain JHS95_03940 PF01336 OB-fold nucleic acid binding domain JHS95_03940 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JHS95_03940 PF14579 Helix-hairpin-helix motif JHS95_03940 PF07733 Bacterial DNA polymerase III alpha NTPase domain JHS95_03945 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit JHS95_03950 PF01171 PP-loop family JHS95_03950 PF11734 TilS substrate C-terminal domain JHS95_03950 PF09179 TilS substrate binding domain JHS95_03955 PF00034 Cytochrome c JHS95_03960 PF00543 Nitrogen regulatory protein P-II JHS95_03965 PF03372 Endonuclease/Exonuclease/phosphatase family JHS95_03975 PF01464 Transglycosylase SLT domain JHS95_03975 PF01476 LysM domain JHS95_03980 PF16123 Hydroxyacylglutathione hydrolase C-terminus JHS95_03980 PF00753 Metallo-beta-lactamase superfamily JHS95_03985 PF08241 Methyltransferase domain JHS95_03990 PF00075 RNase H JHS95_03995 PF00929 Exonuclease JHS95_04005 PF00916 Sulfate permease family JHS95_04005 PF01740 STAS domain JHS95_04010 PF09317 Domain of unknown function (DUF1974) JHS95_04010 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JHS95_04010 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JHS95_04010 PF02770 Acyl-CoA dehydrogenase, middle domain JHS95_04015 PF13580 SIS domain JHS95_04020 PF13230 Glutamine amidotransferases class-II JHS95_04025 PF00551 Formyl transferase JHS95_04030 PF02769 AIR synthase related protein, C-terminal domain JHS95_04030 PF00586 AIR synthase related protein, N-terminal domain JHS95_04040 PF00860 Permease family JHS95_04055 PF03358 NADPH-dependent FMN reductase JHS95_04060 PF03960 ArsC family JHS95_04065 PF01435 Peptidase family M48 JHS95_04065 PF13181 Tetratricopeptide repeat JHS95_04075 PF01594 AI-2E family transporter JHS95_04080 PF00578 AhpC/TSA family JHS95_04085 PF01842 ACT domain JHS95_04090 PF00701 Dihydrodipicolinate synthetase family JHS95_04095 PF06804 NlpB/DapX lipoprotein JHS95_04110 PF01546 Peptidase family M20/M25/M40 JHS95_04110 PF07687 Peptidase dimerisation domain JHS95_04115 PF03960 ArsC family JHS95_04135 PF11143 Protein of unknown function (DUF2919) JHS95_04140 PF04261 Dyp-type peroxidase family JHS95_04145 PF00700 Bacterial flagellin C-terminal helical region JHS95_04145 PF07196 Flagellin hook IN motif JHS95_04145 PF00669 Bacterial flagellin N-terminal helical region JHS95_04150 PF07196 Flagellin hook IN motif JHS95_04150 PF00669 Bacterial flagellin N-terminal helical region JHS95_04150 PF00700 Bacterial flagellin C-terminal helical region JHS95_04155 PF00700 Bacterial flagellin C-terminal helical region JHS95_04155 PF00669 Bacterial flagellin N-terminal helical region JHS95_04155 PF07196 Flagellin hook IN motif JHS95_04160 PF03646 FlaG protein JHS95_04165 PF07196 Flagellin hook IN motif JHS95_04165 PF07195 Flagellar hook-associated protein 2 C-terminus JHS95_04165 PF02465 Flagellar hook-associated protein 2 N-terminus JHS95_04175 PF02561 Flagellar protein FliS JHS95_04180 PF06490 Flagellar regulatory protein FleQ JHS95_04180 PF02954 Bacterial regulatory protein, Fis family JHS95_04180 PF00158 Sigma-54 interaction domain JHS95_04185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_04185 PF00512 His Kinase A (phospho-acceptor) domain JHS95_04185 PF13188 PAS domain JHS95_04190 PF00072 Response regulator receiver domain JHS95_04190 PF00158 Sigma-54 interaction domain JHS95_04190 PF02954 Bacterial regulatory protein, Fis family JHS95_04195 PF02049 Flagellar hook-basal body complex protein FliE JHS95_04200 PF01514 Secretory protein of YscJ/FliF family JHS95_04200 PF08345 Flagellar M-ring protein C-terminal JHS95_04205 PF01706 FliG C-terminal domain JHS95_04205 PF14841 FliG middle domain JHS95_04205 PF14842 FliG N-terminal domain JHS95_04215 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JHS95_04215 PF18269 T3SS EscN ATPase C-terminal domain JHS95_04235 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JHS95_04235 PF02154 Flagellar motor switch protein FliM JHS95_04240 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JHS95_04245 PF04347 Flagellar biosynthesis protein, FliO JHS95_04250 PF00813 FliP family JHS95_04255 PF01313 Bacterial export proteins, family 3 JHS95_04260 PF01311 Bacterial export proteins, family 1 JHS95_04265 PF01312 FlhB HrpN YscU SpaS Family JHS95_04270 PF00771 FHIPEP family JHS95_04275 PF00448 SRP54-type protein, GTPase domain JHS95_04280 PF10609 NUBPL iron-transfer P-loop NTPase JHS95_04285 PF04542 Sigma-70 region 2 JHS95_04285 PF04539 Sigma-70 region 3 JHS95_04285 PF04545 Sigma-70, region 4 JHS95_04290 PF00072 Response regulator receiver domain JHS95_04295 PF04344 Chemotaxis phosphatase, CheZ JHS95_04300 PF00072 Response regulator receiver domain JHS95_04300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_04300 PF01627 Hpt domain JHS95_04300 PF01584 CheW-like domain JHS95_04300 PF02895 Signal transducing histidine kinase, homodimeric domain JHS95_04305 PF01339 CheB methylesterase JHS95_04305 PF00072 Response regulator receiver domain JHS95_04310 PF13614 AAA domain JHS95_04320 PF01584 CheW-like domain JHS95_04330 PF00005 ABC transporter JHS95_04335 PF03379 CcmB protein JHS95_04340 PF01578 Cytochrome C assembly protein JHS95_04345 PF04995 Heme exporter protein D (CcmD) JHS95_04350 PF03100 CcmE JHS95_04355 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal JHS95_04355 PF01578 Cytochrome C assembly protein JHS95_04360 PF08534 Redoxin JHS95_04365 PF03918 Cytochrome C biogenesis protein JHS95_04375 PF04333 MlaA lipoprotein JHS95_04380 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JHS95_04385 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JHS95_04395 PF04542 Sigma-70 region 2 JHS95_04395 PF08281 Sigma-70, region 4 JHS95_04400 PF02803 Thiolase, C-terminal domain JHS95_04400 PF00108 Thiolase, N-terminal domain JHS95_04405 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JHS95_04405 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JHS95_04405 PF00378 Enoyl-CoA hydratase/isomerase JHS95_04415 PF00675 Insulinase (Peptidase family M16) JHS95_04415 PF05193 Peptidase M16 inactive domain JHS95_04415 PF16187 Middle or third domain of peptidase_M16 JHS95_04420 PF00300 Histidine phosphatase superfamily (branch 1) JHS95_04425 PF01797 Transposase IS200 like JHS95_04430 PF01713 Smr domain JHS95_04435 PF05175 Methyltransferase small domain JHS95_04440 PF01264 Chorismate synthase JHS95_04445 PF03458 UPF0126 domain JHS95_04450 PF04315 Elongation factor P hydroxylase JHS95_04455 PF08891 YfcL protein JHS95_04460 PF03358 NADPH-dependent FMN reductase JHS95_04465 PF01266 FAD dependent oxidoreductase JHS95_04465 PF05430 S-adenosyl-L-methionine-dependent methyltransferase JHS95_04470 PF00109 Beta-ketoacyl synthase, N-terminal domain JHS95_04470 PF02801 Beta-ketoacyl synthase, C-terminal domain JHS95_04475 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JHS95_04475 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JHS95_04475 PF11890 Domain of unknown function (DUF3410) JHS95_04480 PF01118 Semialdehyde dehydrogenase, NAD binding domain JHS95_04480 PF02774 Semialdehyde dehydrogenase, dimerisation domain JHS95_04490 PF01416 tRNA pseudouridine synthase JHS95_04495 PF01039 Carboxyl transferase domain JHS95_04495 PF17848 Acetyl-coA carboxylase zinc finger domain JHS95_04500 PF02875 Mur ligase family, glutamate ligase domain JHS95_04500 PF08245 Mur ligase middle domain JHS95_04505 PF05036 Sporulation related domain JHS95_04510 PF02674 Colicin V production protein JHS95_04515 PF00156 Phosphoribosyl transferase domain JHS95_04520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_04520 PF03466 LysR substrate binding domain JHS95_04525 PF00072 Response regulator receiver domain JHS95_04530 PF04304 Protein of unknown function (DUF454) JHS95_04535 PF00156 Phosphoribosyl transferase domain JHS95_04540 PF12169 DNA polymerase III subunits gamma and tau domain III JHS95_04540 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding JHS95_04540 PF12170 DNA polymerase III tau subunit V interacting with alpha JHS95_04545 PF02575 YbaB/EbfC DNA-binding family JHS95_04550 PF02132 RecR protein JHS95_04550 PF13662 Toprim domain JHS95_04555 PF00230 Major intrinsic protein JHS95_04565 PF01042 Endoribonuclease L-PSP JHS95_04570 PF03313 Serine dehydratase alpha chain JHS95_04580 PF03692 Putative zinc- or iron-chelating domain JHS95_04585 PF04226 Transglycosylase associated protein JHS95_04590 PF03692 Putative zinc- or iron-chelating domain JHS95_04595 PF05552 Conserved TM helix JHS95_04595 PF00924 Mechanosensitive ion channel JHS95_04605 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JHS95_04615 PF00245 Alkaline phosphatase JHS95_04630 PF13847 Methyltransferase domain JHS95_04635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS95_04635 PF00672 HAMP domain JHS95_04635 PF02743 Cache domain JHS95_04640 PF01263 Aldose 1-epimerase JHS95_04645 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JHS95_04645 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JHS95_04650 PF01641 SelR domain JHS95_04660 PF07023 Protein of unknown function (DUF1315) JHS95_04665 PF00710 Asparaginase, N-terminal JHS95_04665 PF17763 Glutaminase/Asparaginase C-terminal domain JHS95_04670 PF01343 Peptidase family S49 JHS95_04675 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JHS95_04675 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS95_04680 PF00881 Nitroreductase family JHS95_04685 PF01131 DNA topoisomerase JHS95_04685 PF01751 Toprim domain JHS95_04695 PF00106 short chain dehydrogenase JHS95_04700 PF00850 Histone deacetylase domain JHS95_04710 PF11893 Domain of unknown function (DUF3413) JHS95_04710 PF00884 Sulfatase JHS95_04715 PF07208 Protein of unknown function (DUF1414) JHS95_04720 PF04245 37-kD nucleoid-associated bacterial protein JHS95_04740 PF03553 Na+/H+ antiporter family JHS95_04745 PF02774 Semialdehyde dehydrogenase, dimerisation domain JHS95_04745 PF01118 Semialdehyde dehydrogenase, NAD binding domain JHS95_04750 PF00027 Cyclic nucleotide-binding domain JHS95_04750 PF00520 Ion transport protein JHS95_04755 PF01914 MarC family integral membrane protein JHS95_04760 PF00465 Iron-containing alcohol dehydrogenase JHS95_04760 PF00171 Aldehyde dehydrogenase family JHS95_04775 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JHS95_04775 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JHS95_04780 PF00462 Glutaredoxin JHS95_04790 PF03553 Na+/H+ antiporter family JHS95_04790 PF13726 Na+-H+ antiporter family JHS95_04795 PF00929 Exonuclease JHS95_04800 PF00691 OmpA family JHS95_04800 PF18393 MotY N-terminal domain JHS95_04805 PF10952 Protein of unknown function (DUF2753) JHS95_04810 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JHS95_04815 PF10576 Iron-sulfur binding domain of endonuclease III JHS95_04815 PF00633 Helix-hairpin-helix motif JHS95_04815 PF00730 HhH-GPD superfamily base excision DNA repair protein JHS95_04820 PF02508 Rnf-Nqr subunit, membrane protein JHS95_04825 PF04205 FMN-binding domain JHS95_04830 PF03116 NQR2, RnfD, RnfE family JHS95_04835 PF12838 4Fe-4S dicluster domain JHS95_04835 PF10531 SLBB domain JHS95_04835 PF13375 RnfC Barrel sandwich hybrid domain JHS95_04835 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JHS95_04840 PF04060 Putative Fe-S cluster JHS95_04845 PF02508 Rnf-Nqr subunit, membrane protein JHS95_04855 PF17757 UvrB interaction domain JHS95_04855 PF12344 Ultra-violet resistance protein B JHS95_04855 PF02151 UvrB/uvrC motif JHS95_04855 PF04851 Type III restriction enzyme, res subunit JHS95_04855 PF00271 Helicase conserved C-terminal domain JHS95_04860 PF02954 Bacterial regulatory protein, Fis family JHS95_04860 PF00158 Sigma-54 interaction domain JHS95_04860 PF00072 Response regulator receiver domain JHS95_04865 PF01627 Hpt domain JHS95_04870 PF01933 Uncharacterised protein family UPF0052 JHS95_04875 PF06463 Molybdenum Cofactor Synthesis C JHS95_04875 PF04055 Radical SAM superfamily JHS95_04880 PF00994 Probable molybdopterin binding domain JHS95_04885 PF01967 MoaC family JHS95_04890 PF02597 ThiS family JHS95_04895 PF02391 MoaE protein JHS95_04900 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JHS95_04905 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_04910 PF12911 N-terminal TM domain of oligopeptide transport permease C JHS95_04910 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_04915 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS95_04915 PF00005 ABC transporter JHS95_04920 PF00005 ABC transporter JHS95_04920 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS95_04925 PF13409 Glutathione S-transferase, N-terminal domain JHS95_04935 PF13194 Domain of unknown function (DUF4010) JHS95_04940 PF07085 DRTGG domain JHS95_04940 PF01515 Phosphate acetyl/butaryl transferase JHS95_04945 PF00871 Acetokinase family JHS95_04950 PF04217 Protein of unknown function, DUF412 JHS95_04960 PF02653 Branched-chain amino acid transport system / permease component JHS95_04965 PF00005 ABC transporter JHS95_04970 PF02903 Alpha amylase, N-terminal ig-like domain JHS95_04970 PF00128 Alpha amylase, catalytic domain JHS95_04975 PF00990 Diguanylate cyclase, GGDEF domain JHS95_04980 PF01207 Dihydrouridine synthase (Dus) JHS95_04985 PF07516 SecA Wing and Scaffold domain JHS95_04985 PF01043 SecA preprotein cross-linking domain JHS95_04985 PF07517 SecA DEAD-like domain JHS95_04985 PF02810 SEC-C motif JHS95_04990 PF02600 Disulfide bond formation protein DsbB JHS95_04995 PF06450 Bacterial Na+/H+ antiporter B (NhaB) JHS95_05000 PF07840 FadR C-terminal domain JHS95_05000 PF00392 Bacterial regulatory proteins, gntR family JHS95_05010 PF09334 tRNA synthetases class I (M) JHS95_05010 PF01588 Putative tRNA binding domain JHS95_05015 PF10609 NUBPL iron-transfer P-loop NTPase JHS95_05020 PF00485 Phosphoribulokinase / Uridine kinase family JHS95_05030 PF12557 Cob(I)alamin adenosyltransferase N terminal JHS95_05030 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP JHS95_05035 PF01451 Low molecular weight phosphotyrosine protein phosphatase JHS95_05040 PF01740 STAS domain JHS95_05040 PF00916 Sulfate permease family JHS95_05045 PF10150 Ribonuclease E/G family JHS95_05045 PF00575 S1 RNA binding domain JHS95_05045 PF12111 Polyribonucleotide phosphorylase C terminal JHS95_05050 PF00849 RNA pseudouridylate synthase JHS95_05050 PF01479 S4 domain JHS95_05055 PF02545 Maf-like protein JHS95_05060 PF02620 Large ribosomal RNA subunit accumulation protein YceD JHS95_05065 PF01783 Ribosomal L32p protein family JHS95_05070 PF02504 Fatty acid synthesis protein JHS95_05075 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JHS95_05075 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JHS95_05080 PF00698 Acyl transferase domain JHS95_05090 PF00550 Phosphopantetheine attachment site JHS95_05095 PF00109 Beta-ketoacyl synthase, N-terminal domain JHS95_05095 PF02801 Beta-ketoacyl synthase, C-terminal domain JHS95_05100 PF01063 Amino-transferase class IV JHS95_05105 PF02618 YceG-like family JHS95_05110 PF02223 Thymidylate kinase JHS95_05115 PF09115 DNA polymerase III, delta subunit, C terminal JHS95_05120 PF01026 TatD related DNase JHS95_05125 PF00367 phosphotransferase system, EIIB JHS95_05125 PF02378 Phosphotransferase system, EIIC JHS95_05135 PF01797 Transposase IS200 like JHS95_05145 PF00209 Sodium:neurotransmitter symporter family JHS95_05160 PF01734 Patatin-like phospholipase JHS95_05165 PF02887 Pyruvate kinase, alpha/beta domain JHS95_05165 PF00224 Pyruvate kinase, barrel domain JHS95_05170 PF00480 ROK family JHS95_05175 PF01797 Transposase IS200 like JHS95_05180 PF01584 CheW-like domain JHS95_05180 PF00072 Response regulator receiver domain JHS95_05185 PF07733 Bacterial DNA polymerase III alpha NTPase domain JHS95_05185 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JHS95_05185 PF14579 Helix-hairpin-helix motif JHS95_05185 PF01336 OB-fold nucleic acid binding domain JHS95_05185 PF02811 PHP domain JHS95_05200 PF00106 short chain dehydrogenase JHS95_05205 PF01343 Peptidase family S49 JHS95_05205 PF08496 Peptidase family S49 N-terminal JHS95_05210 PF02224 Cytidylate kinase JHS95_05215 PF00575 S1 RNA binding domain JHS95_05220 PF00216 Bacterial DNA-binding protein JHS95_05225 PF06305 Lipopolysaccharide assembly protein A domain JHS95_05230 PF18073 Rubredoxin metal binding domain JHS95_05235 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JHS95_05240 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JHS95_05250 PF01370 NAD dependent epimerase/dehydratase family JHS95_05255 PF00535 Glycosyl transferase family 2 JHS95_05265 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase JHS95_05275 PF02470 MlaD protein JHS95_05280 PF04403 Paraquat-inducible protein A JHS95_05285 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JHS95_05290 PF00034 Cytochrome c JHS95_05295 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JHS95_05295 PF00384 Molybdopterin oxidoreductase JHS95_05295 PF01568 Molydopterin dinucleotide binding domain JHS95_05300 PF03916 Polysulphide reductase, NrfD JHS95_05305 PF13247 4Fe-4S dicluster domain JHS95_05310 PF00512 His Kinase A (phospho-acceptor) domain JHS95_05310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_05315 PF00196 Bacterial regulatory proteins, luxR family JHS95_05315 PF00072 Response regulator receiver domain JHS95_05320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_05320 PF03466 LysR substrate binding domain JHS95_05330 PF02683 Cytochrome C biogenesis protein transmembrane region JHS95_05330 PF11412 Disulphide bond corrector protein DsbC JHS95_05335 PF00085 Thioredoxin JHS95_05350 PF05958 tRNA (Uracil-5-)-methyltransferase JHS95_05365 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS95_05375 PF00005 ABC transporter JHS95_05375 PF02687 FtsX-like permease family JHS95_05375 PF12704 MacB-like periplasmic core domain JHS95_05380 PF02687 FtsX-like permease family JHS95_05380 PF00005 ABC transporter JHS95_05380 PF12704 MacB-like periplasmic core domain JHS95_05385 PF00005 ABC transporter JHS95_05385 PF02687 FtsX-like permease family JHS95_05385 PF12704 MacB-like periplasmic core domain JHS95_05390 PF00857 Isochorismatase family JHS95_05395 PF02311 AraC-like ligand binding domain JHS95_05395 PF12833 Helix-turn-helix domain JHS95_05405 PF08267 Cobalamin-independent synthase, N-terminal domain JHS95_05405 PF01717 Cobalamin-independent synthase, Catalytic domain JHS95_05415 PF00529 HlyD membrane-fusion protein of T1SS JHS95_05415 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS95_05420 PF03466 LysR substrate binding domain JHS95_05420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_05440 PF00672 HAMP domain JHS95_05440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_05440 PF00512 His Kinase A (phospho-acceptor) domain JHS95_05445 PF00072 Response regulator receiver domain JHS95_05445 PF00486 Transcriptional regulatory protein, C terminal JHS95_05450 PF00672 HAMP domain JHS95_05450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS95_05455 PF11842 Domain of unknown function (DUF3362) JHS95_05455 PF04055 Radical SAM superfamily JHS95_05455 PF08497 Radical SAM N-terminal JHS95_05460 PF01590 GAF domain JHS95_05460 PF00360 Phytochrome region JHS95_05460 PF00990 Diguanylate cyclase, GGDEF domain JHS95_05460 PF00563 EAL domain JHS95_05475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_05475 PF03466 LysR substrate binding domain JHS95_05480 PF08267 Cobalamin-independent synthase, N-terminal domain JHS95_05480 PF01717 Cobalamin-independent synthase, Catalytic domain JHS95_05490 PF03795 YCII-related domain JHS95_05495 PF03061 Thioesterase superfamily JHS95_05500 PF04279 Intracellular septation protein A JHS95_05510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_05510 PF00072 Response regulator receiver domain JHS95_05515 PF17327 Acyl homoserine lactone synthase JHS95_05520 PF00375 Sodium:dicarboxylate symporter family JHS95_05525 PF00501 AMP-binding enzyme JHS95_05525 PF13193 AMP-binding enzyme C-terminal domain JHS95_05530 PF00027 Cyclic nucleotide-binding domain JHS95_05530 PF13545 Crp-like helix-turn-helix domain JHS95_05535 PF00290 Tryptophan synthase alpha chain JHS95_05540 PF00291 Pyridoxal-phosphate dependent enzyme JHS95_05545 PF00218 Indole-3-glycerol phosphate synthase JHS95_05545 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase JHS95_05550 PF02885 Glycosyl transferase family, helical bundle domain JHS95_05550 PF00591 Glycosyl transferase family, a/b domain JHS95_05555 PF00117 Glutamine amidotransferase class-I JHS95_05560 PF04715 Anthranilate synthase component I, N terminal region JHS95_05560 PF00425 chorismate binding enzyme JHS95_05565 PF08056 Tryptophan operon leader peptide JHS95_05570 PF02811 PHP domain JHS95_05575 PF01300 Telomere recombination JHS95_05585 PF00849 RNA pseudouridylate synthase JHS95_05585 PF01479 S4 domain JHS95_05590 PF01797 Transposase IS200 like JHS95_05595 PF04269 Protein of unknown function, DUF440 JHS95_05600 PF01132 Elongation factor P (EF-P) OB domain JHS95_05600 PF08207 Elongation factor P (EF-P) KOW-like domain JHS95_05600 PF09285 Elongation factor P, C-terminal JHS95_05610 PF00136 DNA polymerase family B JHS95_05610 PF03104 DNA polymerase family B, exonuclease domain JHS95_05615 PF00196 Bacterial regulatory proteins, luxR family JHS95_05615 PF00072 Response regulator receiver domain JHS95_05620 PF02151 UvrB/uvrC motif JHS95_05620 PF01541 GIY-YIG catalytic domain JHS95_05620 PF08459 UvrC Helix-hairpin-helix N-terminal JHS95_05625 PF01066 CDP-alcohol phosphatidyltransferase JHS95_05650 PF00202 Aminotransferase class-III JHS95_05655 PF16653 Saccharopine dehydrogenase C-terminal domain JHS95_05655 PF03435 Saccharopine dehydrogenase NADP binding domain JHS95_05660 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JHS95_05675 PF00994 Probable molybdopterin binding domain JHS95_05685 PF00268 Ribonucleotide reductase, small chain JHS95_05690 PF02867 Ribonucleotide reductase, barrel domain JHS95_05690 PF03477 ATP cone domain JHS95_05690 PF00317 Ribonucleotide reductase, all-alpha domain JHS95_05700 PF03989 DNA gyrase C-terminal domain, beta-propeller JHS95_05700 PF00521 DNA gyrase/topoisomerase IV, subunit A JHS95_05715 PF02335 Cytochrome c552 JHS95_05725 PF13247 4Fe-4S dicluster domain JHS95_05730 PF03916 Polysulphide reductase, NrfD JHS95_05735 PF01578 Cytochrome C assembly protein JHS95_05735 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal JHS95_05740 PF08534 Redoxin JHS95_05745 PF03918 Cytochrome C biogenesis protein JHS95_05755 PF00925 GTP cyclohydrolase II JHS95_05780 PF01471 Putative peptidoglycan binding domain JHS95_05780 PF03734 L,D-transpeptidase catalytic domain JHS95_05785 PF05951 Bacterial protein of unknown function (DUF882) JHS95_05790 PF00753 Metallo-beta-lactamase superfamily JHS95_05805 PF03480 Bacterial extracellular solute-binding protein, family 7 JHS95_05815 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JHS95_05820 PF07730 Histidine kinase JHS95_05820 PF17200 Single Cache domain 2 JHS95_05825 PF00196 Bacterial regulatory proteins, luxR family JHS95_05825 PF00072 Response regulator receiver domain JHS95_05830 PF01047 MarR family JHS95_05835 PF02028 BCCT, betaine/carnitine/choline family transporter JHS95_05840 PF00672 HAMP domain JHS95_05840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS95_05860 PF00155 Aminotransferase class I and II JHS95_05875 PF00155 Aminotransferase class I and II JHS95_05875 PF00392 Bacterial regulatory proteins, gntR family JHS95_05885 PF00152 tRNA synthetases class II (D, K and N) JHS95_05885 PF01336 OB-fold nucleic acid binding domain JHS95_05890 PF02743 Cache domain JHS95_05890 PF00672 HAMP domain JHS95_05890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS95_05895 PF01242 6-pyruvoyl tetrahydropterin synthase JHS95_05905 PF04940 Sensors of blue-light using FAD JHS95_05905 PF00563 EAL domain JHS95_05910 PF03315 Serine dehydratase beta chain JHS95_05910 PF03313 Serine dehydratase alpha chain JHS95_05915 PF03222 Tryptophan/tyrosine permease family JHS95_05920 PF00293 NUDIX domain JHS95_05930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_05930 PF00512 His Kinase A (phospho-acceptor) domain JHS95_05930 PF09308 LuxQ, periplasmic JHS95_05930 PF00072 Response regulator receiver domain JHS95_05935 PF00425 chorismate binding enzyme JHS95_05935 PF04715 Anthranilate synthase component I, N terminal region JHS95_05950 PF04317 YcjX-like family, DUF463 JHS95_05955 PF05128 Domain of unknown function (DUF697) JHS95_05960 PF18024 Helix-turn-helix domain JHS95_05960 PF00158 Sigma-54 interaction domain JHS95_05965 PF13302 Acetyltransferase (GNAT) domain JHS95_05980 PF01797 Transposase IS200 like JHS95_05985 PF13495 Phage integrase, N-terminal SAM-like domain JHS95_05985 PF00589 Phage integrase family JHS95_06315 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JHS95_06355 PF00583 Acetyltransferase (GNAT) family JHS95_06385 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JHS95_06390 PF13361 UvrD-like helicase C-terminal domain JHS95_06390 PF00580 UvrD/REP helicase N-terminal domain JHS95_06405 PF05016 ParE toxin of type II toxin-antitoxin system, parDE JHS95_06425 PF01810 LysE type translocator JHS95_06480 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JHS95_06605 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JHS95_06625 PF13302 Acetyltransferase (GNAT) domain JHS95_06690 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JHS95_06695 PF05016 ParE toxin of type II toxin-antitoxin system, parDE JHS95_06745 PF00293 NUDIX domain JHS95_06785 PF01810 LysE type translocator JHS95_06825 PF01809 Putative membrane protein insertion efficiency factor JHS95_06840 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JHS95_06870 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system JHS95_06875 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system JHS95_06900 PF07885 Ion channel JHS95_06900 PF02254 TrkA-N domain JHS95_06930 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JHS95_06945 PF10137 Predicted nucleotide-binding protein containing TIR-like domain JHS95_07135 PF05016 ParE toxin of type II toxin-antitoxin system, parDE JHS95_07245 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) JHS95_07330 PF05656 Protein of unknown function (DUF805) JHS95_07340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JHS95_07380 PF13333 Integrase core domain JHS95_07380 PF00665 Integrase core domain JHS95_07380 PF13276 HTH-like domain JHS95_07405 PF01810 LysE type translocator JHS95_07430 PF03553 Na+/H+ antiporter family JHS95_07435 PF00120 Glutamine synthetase, catalytic domain JHS95_07440 PF07722 Peptidase C26 JHS95_07445 PF01381 Helix-turn-helix JHS95_07445 PF07883 Cupin domain JHS95_07450 PF00171 Aldehyde dehydrogenase family JHS95_07455 PF01266 FAD dependent oxidoreductase JHS95_07460 PF00795 Carbon-nitrogen hydrolase JHS95_07465 PF04371 Porphyromonas-type peptidyl-arginine deiminase JHS95_07470 PF00171 Aldehyde dehydrogenase family JHS95_07475 PF00202 Aminotransferase class-III JHS95_07480 PF01368 DHH family JHS95_07480 PF02833 DHHA2 domain JHS95_07485 PF00196 Bacterial regulatory proteins, luxR family JHS95_07485 PF00563 EAL domain JHS95_07495 PF02272 DHHA1 domain JHS95_07495 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JHS95_07495 PF01411 tRNA synthetases class II (A) JHS95_07500 PF12833 Helix-turn-helix domain JHS95_07510 PF01047 MarR family JHS95_07515 PF04237 YjbR JHS95_07525 PF01928 CYTH domain JHS95_07535 PF12464 Maltose acetyltransferase JHS95_07535 PF00132 Bacterial transferase hexapeptide (six repeats) JHS95_07550 PF00072 Response regulator receiver domain JHS95_07550 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JHS95_07550 PF01627 Hpt domain JHS95_07550 PF00512 His Kinase A (phospho-acceptor) domain JHS95_07550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_07550 PF00672 HAMP domain JHS95_07555 PF03707 Bacterial signalling protein N terminal repeat JHS95_07555 PF00990 Diguanylate cyclase, GGDEF domain JHS95_07555 PF00563 EAL domain JHS95_07570 PF04204 Homoserine O-succinyltransferase JHS95_07580 PF13520 Amino acid permease JHS95_07585 PF03279 Bacterial lipid A biosynthesis acyltransferase JHS95_07595 PF13408 Recombinase zinc beta ribbon domain JHS95_07595 PF07508 Recombinase JHS95_07595 PF00239 Resolvase, N terminal domain JHS95_07660 PF07745 Glycosyl hydrolase family 53 JHS95_07665 PF00356 Bacterial regulatory proteins, lacI family JHS95_07670 PF17912 MalK OB fold domain JHS95_07670 PF00005 ABC transporter JHS95_07675 PF13416 Bacterial extracellular solute-binding protein JHS95_07680 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_07685 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_07690 PF07745 Glycosyl hydrolase family 53 JHS95_07695 PF08533 Beta-galactosidase C-terminal domain JHS95_07695 PF02449 Beta-galactosidase JHS95_07695 PF08532 Beta-galactosidase trimerisation domain JHS95_07700 PF02264 LamB porin JHS95_07705 PF12729 Four helix bundle sensory module for signal transduction JHS95_07705 PF00672 HAMP domain JHS95_07705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS95_07710 PF16363 GDP-mannose 4,6 dehydratase JHS95_07715 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain JHS95_07715 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain JHS95_07720 PF10509 Galactokinase galactose-binding signature JHS95_07720 PF08544 GHMP kinases C terminal JHS95_07720 PF00288 GHMP kinases N terminal domain JHS95_07760 PF02463 RecF/RecN/SMC N terminal domain JHS95_07765 PF07804 HipA-like C-terminal domain JHS95_07765 PF13657 HipA N-terminal domain JHS95_07770 PF02074 Carboxypeptidase Taq (M32) metallopeptidase JHS95_07775 PF01810 LysE type translocator JHS95_07785 PF01235 Sodium:alanine symporter family JHS95_07810 PF00884 Sulfatase JHS95_07815 PF00512 His Kinase A (phospho-acceptor) domain JHS95_07815 PF08521 Two-component sensor kinase N-terminal JHS95_07815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_07820 PF00486 Transcriptional regulatory protein, C terminal JHS95_07820 PF00072 Response regulator receiver domain JHS95_07840 PF00501 AMP-binding enzyme JHS95_07850 PF04069 Substrate binding domain of ABC-type glycine betaine transport system JHS95_07855 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_07860 PF00005 ABC transporter JHS95_07860 PF00571 CBS domain JHS95_07875 PF02028 BCCT, betaine/carnitine/choline family transporter JHS95_07880 PF00583 Acetyltransferase (GNAT) family JHS95_07885 PF00202 Aminotransferase class-III JHS95_07890 PF06339 Ectoine synthase JHS95_07895 PF00696 Amino acid kinase family JHS95_07895 PF13840 ACT domain JHS95_07900 PF03150 Di-haem cytochrome c peroxidase JHS95_07900 PF00034 Cytochrome c JHS95_07915 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS95_07930 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain JHS95_07930 PF17203 Single cache domain 3 JHS95_07930 PF00989 PAS fold JHS95_07930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_07935 PF00072 Response regulator receiver domain JHS95_07935 PF12431 Transcriptional regulator JHS95_07940 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain JHS95_07940 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain JHS95_07945 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JHS95_07950 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JHS95_07950 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain JHS95_07970 PF02954 Bacterial regulatory protein, Fis family JHS95_07970 PF00158 Sigma-54 interaction domain JHS95_07970 PF01590 GAF domain JHS95_07975 PF00171 Aldehyde dehydrogenase family JHS95_07995 PF12833 Helix-turn-helix domain JHS95_08010 PF00263 Bacterial type II and III secretion system protein JHS95_08010 PF03958 Bacterial type II/III secretion system short domain JHS95_08015 PF16693 Inner membrane component of T3SS, periplasmic domain JHS95_08015 PF16697 Inner membrane component of T3SS, cytoplasmic domain JHS95_08025 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF JHS95_08030 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) JHS95_08040 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI JHS95_08045 PF01514 Secretory protein of YscJ/FliF family JHS95_08055 PF02108 Flagellar assembly protein FliH JHS95_08065 PF02661 Fic/DOC family JHS95_08095 PF12146 Serine aminopeptidase, S33 JHS95_08100 PF12146 Serine aminopeptidase, S33 JHS95_08105 PF03466 LysR substrate binding domain JHS95_08105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_08110 PF01312 FlhB HrpN YscU SpaS Family JHS95_08115 PF01311 Bacterial export proteins, family 1 JHS95_08120 PF01313 Bacterial export proteins, family 3 JHS95_08125 PF00813 FliP family JHS95_08130 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JHS95_08145 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JHS95_08145 PF02874 ATP synthase alpha/beta family, beta-barrel domain JHS95_08145 PF18269 T3SS EscN ATPase C-terminal domain JHS95_08150 PF07201 HrpJ-like domain JHS95_08155 PF09059 TyeA JHS95_08175 PF00771 FHIPEP family JHS95_08180 PF09621 Type III secretion system regulator (LcrR) JHS95_08185 PF07216 LcrG protein JHS95_08190 PF04792 V antigen (LcrV) protein JHS95_08195 PF07720 Tetratricopeptide repeat JHS95_08205 PF05844 YopD protein JHS95_08215 PF01925 Sulfite exporter TauE/SafE JHS95_08220 PF01970 Tripartite tricarboxylate transporter TctA family JHS95_08250 PF00285 Citrate synthase, C-terminal domain JHS95_08255 PF00694 Aconitase C-terminal domain JHS95_08255 PF00330 Aconitase family (aconitate hydratase) JHS95_08260 PF04303 PrpF protein JHS95_08265 PF13193 AMP-binding enzyme C-terminal domain JHS95_08265 PF00501 AMP-binding enzyme JHS95_08265 PF16177 Acetyl-coenzyme A synthetase N-terminus JHS95_08270 PF00583 Acetyltransferase (GNAT) family JHS95_08275 PF00089 Trypsin JHS95_08290 PF04055 Radical SAM superfamily JHS95_08295 PF06508 Queuosine biosynthesis protein QueC JHS95_08300 PF00990 Diguanylate cyclase, GGDEF domain JHS95_08300 PF17158 Membrane-associated sensor, integral membrane domain JHS95_08310 PF00691 OmpA family JHS95_08310 PF05736 OprF membrane domain JHS95_08325 PF00691 OmpA family JHS95_08325 PF05736 OprF membrane domain JHS95_08340 PF10672 S-adenosylmethionine-dependent methyltransferase JHS95_08340 PF17785 PUA-like domain JHS95_08345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS95_08345 PF02743 Cache domain JHS95_08345 PF00672 HAMP domain JHS95_08350 PF00708 Acylphosphatase JHS95_08355 PF04358 DsrC like protein JHS95_08365 PF01027 Inhibitor of apoptosis-promoting Bax1 JHS95_08370 PF00005 ABC transporter JHS95_08375 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_08380 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_08385 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS95_08390 PF10414 Sirohaem synthase dimerisation region JHS95_08390 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JHS95_08390 PF14824 Sirohaem biosynthesis protein central JHS95_08395 PF04461 Protein of unknown function (DUF520) JHS95_08400 PF00793 DAHP synthetase I family JHS95_08420 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF JHS95_08420 PF01189 16S rRNA methyltransferase RsmB/F JHS95_08420 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF JHS95_08425 PF02470 MlaD protein JHS95_08430 PF04403 Paraquat-inducible protein A JHS95_08435 PF00664 ABC transporter transmembrane region JHS95_08435 PF00005 ABC transporter JHS95_08440 PF13185 GAF domain JHS95_08445 PF17516 ProQ C-terminal domain JHS95_08445 PF04352 ProQ/FINO family JHS95_08450 PF00595 PDZ domain JHS95_08450 PF03572 Peptidase family S41 JHS95_08450 PF17804 Tail specific protease N-terminal domain JHS95_08450 PF11818 C-terminal domain of tail specific protease (DUF3340) JHS95_08460 PF11940 Domain of unknown function (DUF3458) Ig-like fold JHS95_08460 PF17432 Domain of unknown function (DUF3458_C) ARM repeats JHS95_08460 PF01433 Peptidase family M1 domain JHS95_08470 PF05088 Bacterial NAD-glutamate dehydrogenase JHS95_08475 PF01180 Dihydroorotate dehydrogenase JHS95_08480 PF07126 Cell-division protein ZapC JHS95_08485 PF01170 Putative RNA methylase family UPF0020 JHS95_08485 PF02926 THUMP domain JHS95_08485 PF10672 S-adenosylmethionine-dependent methyltransferase JHS95_08495 PF00005 ABC transporter JHS95_08495 PF16326 ABC transporter C-terminal domain JHS95_08495 PF12848 ABC transporter JHS95_08505 PF04957 Ribosome modulation factor JHS95_08510 PF07977 FabA-like domain JHS95_08515 PF13654 AAA domain JHS95_08515 PF05362 Lon protease (S16) C-terminal proteolytic domain JHS95_08520 PF06303 MatP N-terminal domain JHS95_08520 PF17414 MatP C-terminal ribbon-helix-helix domain JHS95_08655 PF09308 LuxQ, periplasmic JHS95_08655 PF00512 His Kinase A (phospho-acceptor) domain JHS95_08655 PF00072 Response regulator receiver domain JHS95_08655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_08670 PF00115 Cytochrome C and Quinol oxidase polypeptide I JHS95_08685 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP JHS95_08685 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JHS95_08695 PF00403 Heavy-metal-associated domain JHS95_08710 PF00027 Cyclic nucleotide-binding domain JHS95_08710 PF13545 Crp-like helix-turn-helix domain JHS95_08715 PF00582 Universal stress protein family JHS95_08720 PF01171 PP-loop family JHS95_08740 PF00005 ABC transporter JHS95_08740 PF08402 TOBE domain JHS95_08745 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_08750 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_08755 PF13416 Bacterial extracellular solute-binding protein JHS95_08760 PF13416 Bacterial extracellular solute-binding protein JHS95_08765 PF02146 Sir2 family JHS95_08775 PF00909 Ammonium Transporter Family JHS95_08825 PF03527 RHS protein JHS95_08825 PF05593 RHS Repeat JHS95_08840 PF13247 4Fe-4S dicluster domain JHS95_08845 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JHS95_08845 PF01568 Molydopterin dinucleotide binding domain JHS95_08845 PF00384 Molybdopterin oxidoreductase JHS95_08855 PF02613 Nitrate reductase delta subunit JHS95_08875 PF02634 FdhD/NarQ family JHS95_08880 PF12848 ABC transporter JHS95_08880 PF00005 ABC transporter JHS95_08885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_08885 PF00512 His Kinase A (phospho-acceptor) domain JHS95_08890 PF00158 Sigma-54 interaction domain JHS95_08890 PF00072 Response regulator receiver domain JHS95_08890 PF02954 Bacterial regulatory protein, Fis family JHS95_08895 PF12849 PBP superfamily domain JHS95_08900 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_08905 PF08402 TOBE domain JHS95_08905 PF00005 ABC transporter JHS95_08910 PF12804 MobA-like NTP transferase domain JHS95_08915 PF00994 Probable molybdopterin binding domain JHS95_08915 PF03454 MoeA C-terminal region (domain IV) JHS95_08915 PF03453 MoeA N-terminal region (domain I and II) JHS95_08925 PF00480 ROK family JHS95_08930 PF03942 DTW domain JHS95_08965 PF00672 HAMP domain JHS95_08965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS95_08965 PF17202 Single cache domain 3 JHS95_08970 PF00877 NlpC/P60 family JHS95_08980 PF05230 MASE2 domain JHS95_08980 PF00990 Diguanylate cyclase, GGDEF domain JHS95_08985 PF01339 CheB methylesterase JHS95_08985 PF00072 Response regulator receiver domain JHS95_08990 PF03881 Fructosamine kinase JHS95_09000 PF00677 Lumazine binding domain JHS95_09005 PF01554 MatE JHS95_09015 PF01068 ATP dependent DNA ligase domain JHS95_09015 PF14743 DNA ligase OB-like domain JHS95_09020 PF01740 STAS domain JHS95_09030 PF02563 Polysaccharide biosynthesis/export protein JHS95_09030 PF10531 SLBB domain JHS95_09045 PF00072 Response regulator receiver domain JHS95_09045 PF02954 Bacterial regulatory protein, Fis family JHS95_09045 PF00158 Sigma-54 interaction domain JHS95_09050 PF13439 Glycosyltransferase Family 4 JHS95_09050 PF00534 Glycosyl transferases group 1 JHS95_09055 PF00534 Glycosyl transferases group 1 JHS95_09055 PF13439 Glycosyltransferase Family 4 JHS95_09085 PF13439 Glycosyltransferase Family 4 JHS95_09085 PF00534 Glycosyl transferases group 1 JHS95_09090 PF00535 Glycosyl transferase family 2 JHS95_09095 PF02397 Bacterial sugar transferase JHS95_09105 PF02028 BCCT, betaine/carnitine/choline family transporter JHS95_09120 PF04408 Helicase associated domain (HA2) JHS95_09120 PF00271 Helicase conserved C-terminal domain JHS95_09120 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold JHS95_09120 PF11898 Domain of unknown function (DUF3418) JHS95_09120 PF00270 DEAD/DEAH box helicase JHS95_09125 PF02525 Flavodoxin-like fold JHS95_09135 PF02613 Nitrate reductase delta subunit JHS95_09140 PF04976 DMSO reductase anchor subunit (DmsC) JHS95_09145 PF13247 4Fe-4S dicluster domain JHS95_09145 PF12800 4Fe-4S binding domain JHS95_09150 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JHS95_09150 PF01568 Molydopterin dinucleotide binding domain JHS95_09150 PF00384 Molybdopterin oxidoreductase JHS95_09155 PF01797 Transposase IS200 like JHS95_09185 PF00990 Diguanylate cyclase, GGDEF domain JHS95_09185 PF17158 Membrane-associated sensor, integral membrane domain JHS95_09195 PF00012 Hsp70 protein JHS95_09200 PF00012 Hsp70 protein JHS95_09225 PF00664 ABC transporter transmembrane region JHS95_09225 PF00005 ABC transporter JHS95_09230 PF00664 ABC transporter transmembrane region JHS95_09230 PF00005 ABC transporter JHS95_09250 PF03222 Tryptophan/tyrosine permease family JHS95_09255 PF00465 Iron-containing alcohol dehydrogenase JHS95_09260 PF01966 HD domain JHS95_09315 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE JHS95_09345 PF01037 Lrp/AsnC ligand binding domain JHS95_09355 PF05947 Type VI secretion system, TssF JHS95_09365 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath JHS95_09380 PF00069 Protein kinase domain JHS95_09405 PF04717 Type VI secretion system, phage-baseplate injector JHS95_09410 PF05638 Type VI secretion system effector, Hcp JHS95_09415 PF10431 C-terminal, D2-small domain, of ClpB protein JHS95_09415 PF17871 AAA lid domain JHS95_09415 PF07724 AAA domain (Cdc48 subfamily) JHS95_09415 PF00004 ATPase family associated with various cellular activities (AAA) JHS95_09420 PF00158 Sigma-54 interaction domain JHS95_09420 PF02954 Bacterial regulatory protein, Fis family JHS95_09420 PF00072 Response regulator receiver domain JHS95_09445 PF01476 LysM domain JHS95_09445 PF08525 Opacity-associated protein A N-terminal motif JHS95_09445 PF01551 Peptidase family M23 JHS95_09450 PF03741 Integral membrane protein TerC family JHS95_09460 PF04055 Radical SAM superfamily JHS95_09465 PF11230 Protein of unknown function (DUF3029) JHS95_09470 PF01810 LysE type translocator JHS95_09475 PF11871 Domain of unknown function (DUF3391) JHS95_09475 PF01966 HD domain JHS95_09480 PF00990 Diguanylate cyclase, GGDEF domain JHS95_09480 PF03707 Bacterial signalling protein N terminal repeat JHS95_09480 PF00563 EAL domain JHS95_09485 PF02954 Bacterial regulatory protein, Fis family JHS95_09485 PF00072 Response regulator receiver domain JHS95_09485 PF00158 Sigma-54 interaction domain JHS95_09490 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS95_09490 PF00512 His Kinase A (phospho-acceptor) domain JHS95_09490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_09495 PF00939 Sodium:sulfate symporter transmembrane region JHS95_09510 PF00300 Histidine phosphatase superfamily (branch 1) JHS95_09530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_09530 PF03466 LysR substrate binding domain JHS95_09535 PF08543 Phosphomethylpyrimidine kinase JHS95_09550 PF13533 Biotin-lipoyl like JHS95_09595 PF02798 Glutathione S-transferase, N-terminal domain JHS95_09595 PF14497 Glutathione S-transferase, C-terminal domain JHS95_09605 PF04209 homogentisate 1,2-dioxygenase JHS95_09610 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JHS95_09615 PF07687 Peptidase dimerisation domain JHS95_09615 PF01546 Peptidase family M20/M25/M40 JHS95_09620 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JHS95_09625 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_09630 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_09630 PF12911 N-terminal TM domain of oligopeptide transport permease C JHS95_09635 PF00005 ABC transporter JHS95_09635 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS95_09640 PF00005 ABC transporter JHS95_09640 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS95_09650 PF08453 Peptidase family M9 N-terminal JHS95_09650 PF01752 Collagenase JHS95_09660 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_09665 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_09670 PF00005 ABC transporter JHS95_09670 PF08402 TOBE domain JHS95_09675 PF00701 Dihydrodipicolinate synthetase family JHS95_09680 PF02423 Ornithine cyclodeaminase/mu-crystallin family JHS95_09695 PF05544 Proline racemase JHS95_09700 PF00171 Aldehyde dehydrogenase family JHS95_09705 PF00392 Bacterial regulatory proteins, gntR family JHS95_09725 PF05971 RNA methyltransferase JHS95_09730 PF01863 Protein of unknown function DUF45 JHS95_09735 PF04991 LicD family JHS95_09740 PF16363 GDP-mannose 4,6 dehydratase JHS95_09745 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase JHS95_09765 PF03466 LysR substrate binding domain JHS95_09765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_09785 PF00005 ABC transporter JHS95_09790 PF01032 FecCD transport family JHS95_09795 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family JHS95_09810 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase JHS95_09815 PF02654 Cobalamin-5-phosphate synthase JHS95_09820 PF02277 Phosphoribosyltransferase JHS95_09825 PF13460 NAD(P)H-binding JHS95_09830 PF00375 Sodium:dicarboxylate symporter family JHS95_09835 PF00929 Exonuclease JHS95_09835 PF08411 Exonuclease C-terminal JHS95_09840 PF03788 LrgA family JHS95_09845 PF04172 LrgB-like family JHS95_09850 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region JHS95_09850 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JHS95_09855 PF02222 ATP-grasp domain JHS95_09860 PF05724 Thiopurine S-methyltransferase (TPMT) JHS95_09870 PF00216 Bacterial DNA-binding protein JHS95_09880 PF03483 B3/4 domain JHS95_09880 PF03484 tRNA synthetase B5 domain JHS95_09880 PF03147 Ferredoxin-fold anticodon binding domain JHS95_09880 PF01588 Putative tRNA binding domain JHS95_09880 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JHS95_09885 PF01409 tRNA synthetases class II core domain (F) JHS95_09885 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JHS95_09890 PF00990 Diguanylate cyclase, GGDEF domain JHS95_09890 PF00072 Response regulator receiver domain JHS95_09920 PF01906 Putative heavy-metal-binding JHS95_09925 PF00453 Ribosomal protein L20 JHS95_09930 PF01632 Ribosomal protein L35 JHS95_09935 PF00707 Translation initiation factor IF-3, C-terminal domain JHS95_09935 PF05198 Translation initiation factor IF-3, N-terminal domain JHS95_09940 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JHS95_09940 PF03129 Anticodon binding domain JHS95_09940 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JHS95_09940 PF02824 TGS domain JHS95_09955 PF00392 Bacterial regulatory proteins, gntR family JHS95_09955 PF07702 UTRA domain JHS95_09960 PF01979 Amidohydrolase family JHS95_09965 PF00491 Arginase family JHS95_09970 PF01175 Urocanase Rossmann-like domain JHS95_09970 PF17392 Urocanase C-terminal domain JHS95_09970 PF17391 Urocanase N-terminal domain JHS95_09975 PF00221 Aromatic amino acid lyase JHS95_09985 PF04191 Phospholipid methyltransferase JHS95_09990 PF13183 4Fe-4S dicluster domain JHS95_09990 PF02913 FAD linked oxidases, C-terminal domain JHS95_09990 PF01565 FAD binding domain JHS95_10005 PF00691 OmpA family JHS95_10005 PF05736 OprF membrane domain JHS95_10025 PF01259 SAICAR synthetase JHS95_10030 PF09423 PhoD-like phosphatase JHS95_10030 PF16655 PhoD-like phosphatase, N-terminal domain JHS95_10040 PF02253 Phospholipase A1 JHS95_10045 PF00270 DEAD/DEAH box helicase JHS95_10045 PF08482 ATP-dependent helicase C-terminal JHS95_10045 PF04408 Helicase associated domain (HA2) JHS95_10045 PF00271 Helicase conserved C-terminal domain JHS95_10050 PF03949 Malic enzyme, NAD binding domain JHS95_10050 PF00390 Malic enzyme, N-terminal domain JHS95_10055 PF02698 DUF218 domain JHS95_10060 PF00939 Sodium:sulfate symporter transmembrane region JHS95_10065 PF00990 Diguanylate cyclase, GGDEF domain JHS95_10065 PF00072 Response regulator receiver domain JHS95_10075 PF00266 Aminotransferase class-V JHS95_10085 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS95_10090 PF00664 ABC transporter transmembrane region JHS95_10090 PF00005 ABC transporter JHS95_10095 PF00005 ABC transporter JHS95_10095 PF00664 ABC transporter transmembrane region JHS95_10100 PF00291 Pyridoxal-phosphate dependent enzyme JHS95_10105 PF00266 Aminotransferase class-V JHS95_10115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_10115 PF00512 His Kinase A (phospho-acceptor) domain JHS95_10115 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS95_10130 PF04993 TfoX N-terminal domain JHS95_10130 PF04994 TfoX C-terminal domain JHS95_10140 PF03956 Lysine exporter LysO JHS95_10150 PF00282 Pyridoxal-dependent decarboxylase conserved domain JHS95_10155 PF01380 SIS domain JHS95_10155 PF01418 Helix-turn-helix domain, rpiR family JHS95_10160 PF00465 Iron-containing alcohol dehydrogenase JHS95_10165 PF00462 Glutaredoxin JHS95_10170 PF02080 TrkA-C domain JHS95_10170 PF06826 Predicted Permease Membrane Region JHS95_10175 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase JHS95_10175 PF12241 Trans-2-enoyl-CoA reductase catalytic region JHS95_10175 PF07055 Enoyl reductase FAD binding domain JHS95_10180 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JHS95_10180 PF02770 Acyl-CoA dehydrogenase, middle domain JHS95_10180 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JHS95_10180 PF09317 Domain of unknown function (DUF1974) JHS95_10185 PF00440 Bacterial regulatory proteins, tetR family JHS95_10185 PF16295 Tetracyclin repressor-like, C-terminal domain JHS95_10190 PF06965 Na+/H+ antiporter 1 JHS95_10205 PF00005 ABC transporter JHS95_10210 PF01554 MatE JHS95_10215 PF13460 NAD(P)H-binding JHS95_10215 PF11066 Protein of unknown function (DUF2867) JHS95_10220 PF03264 NapC/NirT cytochrome c family, N-terminal region JHS95_10235 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) JHS95_10250 PF07690 Major Facilitator Superfamily JHS95_10255 PF00849 RNA pseudouridylate synthase JHS95_10255 PF01479 S4 domain JHS95_10260 PF04851 Type III restriction enzyme, res subunit JHS95_10260 PF00271 Helicase conserved C-terminal domain JHS95_10270 PF00486 Transcriptional regulatory protein, C terminal JHS95_10270 PF00072 Response regulator receiver domain JHS95_10275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_10280 PF01386 Ribosomal L25p family JHS95_10295 PF02872 5'-nucleotidase, C-terminal domain JHS95_10295 PF00149 Calcineurin-like phosphoesterase JHS95_10305 PF06945 Protein of unknown function (DUF1289) JHS95_10315 PF00196 Bacterial regulatory proteins, luxR family JHS95_10315 PF00072 Response regulator receiver domain JHS95_10320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_10320 PF00512 His Kinase A (phospho-acceptor) domain JHS95_10330 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JHS95_10330 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS95_10340 PF09335 SNARE associated Golgi protein JHS95_10345 PF13416 Bacterial extracellular solute-binding protein JHS95_10350 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_10355 PF00005 ABC transporter JHS95_10360 PF01066 CDP-alcohol phosphatidyltransferase JHS95_10370 PF01590 GAF domain JHS95_10370 PF00158 Sigma-54 interaction domain JHS95_10375 PF03063 Prismane/CO dehydrogenase family JHS95_10380 PF00970 Oxidoreductase FAD-binding domain JHS95_10380 PF00111 2Fe-2S iron-sulfur cluster binding domain JHS95_10380 PF00175 Oxidoreductase NAD-binding domain JHS95_10390 PF00849 RNA pseudouridylate synthase JHS95_10395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS95_10395 PF12729 Four helix bundle sensory module for signal transduction JHS95_10395 PF00672 HAMP domain JHS95_10400 PF00209 Sodium:neurotransmitter symporter family JHS95_10405 PF13091 PLD-like domain JHS95_10405 PF13396 Phospholipase_D-nuclease N-terminal JHS95_10410 PF01053 Cys/Met metabolism PLP-dependent enzyme JHS95_10415 PF00561 alpha/beta hydrolase fold JHS95_10420 PF03280 Proteobacterial lipase chaperone protein JHS95_10425 PF03352 Methyladenine glycosylase JHS95_10430 PF00873 AcrB/AcrD/AcrF family JHS95_10440 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS95_10445 PF04024 PspC domain JHS95_10450 PF06667 Phage shock protein B JHS95_10455 PF04012 PspA/IM30 family JHS95_10460 PF00158 Sigma-54 interaction domain JHS95_10460 PF02954 Bacterial regulatory protein, Fis family JHS95_10465 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JHS95_10470 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_10475 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_10475 PF12911 N-terminal TM domain of oligopeptide transport permease C JHS95_10480 PF00005 ABC transporter JHS95_10480 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS95_10485 PF00005 ABC transporter JHS95_10495 PF02833 DHHA2 domain JHS95_10495 PF01368 DHH family JHS95_10505 PF16875 Glycosyl hydrolase family 36 N-terminal domain JHS95_10505 PF16874 Glycosyl hydrolase family 36 C-terminal domain JHS95_10510 PF01568 Molydopterin dinucleotide binding domain JHS95_10510 PF00384 Molybdopterin oxidoreductase JHS95_10510 PF18364 Molybdopterin oxidoreductase N-terminal domain JHS95_10515 PF03264 NapC/NirT cytochrome c family, N-terminal region JHS95_10520 PF06796 Periplasmic nitrate reductase protein NapE JHS95_10525 PF03649 Uncharacterised protein family (UPF0014) JHS95_10535 PF01226 Formate/nitrite transporter JHS95_10560 PF02698 DUF218 domain JHS95_10565 PF00265 Thymidine kinase JHS95_10570 PF01406 tRNA synthetases class I (C) catalytic domain JHS95_10570 PF09190 DALR domain JHS95_10575 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JHS95_10580 PF00149 Calcineurin-like phosphoesterase JHS95_10585 PF08668 HDOD domain JHS95_10585 PF00563 EAL domain JHS95_10590 PF02810 SEC-C motif JHS95_10595 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase JHS95_10595 PF01502 Phosphoribosyl-AMP cyclohydrolase JHS95_10600 PF00977 Histidine biosynthesis protein JHS95_10605 PF00977 Histidine biosynthesis protein JHS95_10610 PF00117 Glutamine amidotransferase class-I JHS95_10615 PF08645 Polynucleotide kinase 3 phosphatase JHS95_10615 PF00475 Imidazoleglycerol-phosphate dehydratase JHS95_10620 PF00155 Aminotransferase class I and II JHS95_10625 PF00815 Histidinol dehydrogenase JHS95_10630 PF01634 ATP phosphoribosyltransferase JHS95_10630 PF08029 HisG, C-terminal domain JHS95_10635 PF02954 Bacterial regulatory protein, Fis family JHS95_10635 PF00072 Response regulator receiver domain JHS95_10635 PF00158 Sigma-54 interaction domain JHS95_10645 PF03553 Na+/H+ antiporter family JHS95_10650 PF00816 H-NS histone family JHS95_10655 PF00294 pfkB family carbohydrate kinase JHS95_10670 PF04356 Protein of unknown function (DUF489) JHS95_10675 PF00206 Lyase JHS95_10675 PF08328 Adenylosuccinate lyase C-terminal JHS95_10720 PF01797 Transposase IS200 like JHS95_10725 PF01435 Peptidase family M48 JHS95_10740 PF08241 Methyltransferase domain JHS95_10745 PF00155 Aminotransferase class I and II JHS95_10750 PF04055 Radical SAM superfamily JHS95_10750 PF06968 Biotin and Thiamin Synthesis associated domain JHS95_10755 PF00202 Aminotransferase class-III JHS95_10760 PF01258 Prokaryotic dksA/traR C4-type zinc finger JHS95_10765 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JHS95_10765 PF02403 Seryl-tRNA synthetase N-terminal domain JHS95_10770 PF00004 ATPase family associated with various cellular activities (AAA) JHS95_10770 PF16193 AAA C-terminal domain JHS95_10770 PF12002 MgsA AAA+ ATPase C terminal JHS95_10775 PF03548 Outer membrane lipoprotein carrier protein LolA JHS95_10780 PF13491 4TM region of DNA translocase FtsK/SpoIIIE JHS95_10780 PF17854 FtsK alpha domain JHS95_10780 PF09397 Ftsk gamma domain JHS95_10780 PF01580 FtsK/SpoIIIE family JHS95_10785 PF01037 Lrp/AsnC ligand binding domain JHS95_10790 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JHS95_10790 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JHS95_10800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_10800 PF03466 LysR substrate binding domain JHS95_10810 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) JHS95_10815 PF03372 Endonuclease/Exonuclease/phosphatase family JHS95_10825 PF00579 tRNA synthetases class I (W and Y) JHS95_10840 PF00873 AcrB/AcrD/AcrF family JHS95_10845 PF00529 HlyD membrane-fusion protein of T1SS JHS95_10845 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS95_10850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS95_10850 PF00672 HAMP domain JHS95_10850 PF02743 Cache domain JHS95_10875 PF06610 L-alanine exporter JHS95_10880 PF00072 Response regulator receiver domain JHS95_10880 PF00512 His Kinase A (phospho-acceptor) domain JHS95_10880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_10880 PF09308 LuxQ, periplasmic JHS95_10890 PF03738 Glutathionylspermidine synthase preATP-grasp JHS95_10900 PF03994 Domain of Unknown Function (DUF350) JHS95_10910 PF02445 Quinolinate synthetase A protein JHS95_10915 PF16331 TolA binding protein trimerisation JHS95_10915 PF13174 Tetratricopeptide repeat JHS95_10920 PF00691 OmpA family JHS95_10925 PF04052 TolB amino-terminal domain JHS95_10925 PF07676 WD40-like Beta Propeller Repeat JHS95_10935 PF02472 Biopolymer transport protein ExbD/TolR JHS95_10940 PF01618 MotA/TolQ/ExbB proton channel family JHS95_10945 PF03061 Thioesterase superfamily JHS95_10955 PF08173 Membrane bound YbgT-like protein JHS95_10960 PF02322 Cytochrome bd terminal oxidase subunit II JHS95_10965 PF01654 Cytochrome bd terminal oxidase subunit I JHS95_10970 PF05491 RuvB C-terminal winged helix domain JHS95_10970 PF05496 Holliday junction DNA helicase RuvB P-loop domain JHS95_10970 PF17864 RuvB AAA lid domain JHS95_10975 PF01330 RuvA N terminal domain JHS95_10975 PF07499 RuvA, C-terminal domain JHS95_10980 PF02203 Tar ligand binding domain homologue JHS95_10980 PF00672 HAMP domain JHS95_10980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS95_10985 PF02075 Crossover junction endodeoxyribonuclease RuvC JHS95_10990 PF01336 OB-fold nucleic acid binding domain JHS95_10990 PF02938 GAD domain JHS95_10990 PF00152 tRNA synthetases class II (D, K and N) JHS95_10995 PF01904 Protein of unknown function DUF72 JHS95_11000 PF13649 Methyltransferase domain JHS95_11005 PF08003 Protein of unknown function (DUF1698) JHS95_11010 PF08443 RimK-like ATP-grasp domain JHS95_11010 PF18030 RimK PreATP-grasp domain JHS95_11020 PF18030 RimK PreATP-grasp domain JHS95_11020 PF08443 RimK-like ATP-grasp domain JHS95_11030 PF04310 MukB N-terminal JHS95_11030 PF16330 MukB hinge domain JHS95_11035 PF04288 MukE-like family JHS95_11040 PF17193 MukF C-terminal domain JHS95_11040 PF17192 MukF middle domain JHS95_11040 PF03882 MukF winged-helix domain JHS95_11045 PF13847 Methyltransferase domain JHS95_11050 PF02698 DUF218 domain JHS95_11055 PF00486 Transcriptional regulatory protein, C terminal JHS95_11055 PF00072 Response regulator receiver domain JHS95_11060 PF02613 Nitrate reductase delta subunit JHS95_11065 PF00356 Bacterial regulatory proteins, lacI family JHS95_11070 PF04994 TfoX C-terminal domain JHS95_11070 PF04993 TfoX N-terminal domain JHS95_11090 PF08323 Starch synthase catalytic domain JHS95_11090 PF00534 Glycosyl transferases group 1 JHS95_11095 PF00483 Nucleotidyl transferase JHS95_11100 PF01131 DNA topoisomerase JHS95_11100 PF01396 Topoisomerase DNA binding C4 zinc finger JHS95_11100 PF01751 Toprim domain JHS95_11100 PF08272 Topoisomerase I zinc-ribbon-like JHS95_11105 PF10692 Protein of unknown function (DUF2498) JHS95_11110 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JHS95_11120 PF03588 Leucyl/phenylalanyl-tRNA protein transferase JHS95_11125 PF04376 Arginine-tRNA-protein transferase, N terminus JHS95_11125 PF04377 Arginine-tRNA-protein transferase, C terminus JHS95_11130 PF01176 Translation initiation factor 1A / IF-1 JHS95_11140 PF10431 C-terminal, D2-small domain, of ClpB protein JHS95_11140 PF02861 Clp amino terminal domain, pathogenicity island component JHS95_11140 PF07724 AAA domain (Cdc48 subfamily) JHS95_11140 PF00004 ATPase family associated with various cellular activities (AAA) JHS95_11140 PF17871 AAA lid domain JHS95_11145 PF02617 ATP-dependent Clp protease adaptor protein ClpS JHS95_11150 PF00313 'Cold-shock' DNA-binding domain JHS95_11155 PF03971 Monomeric isocitrate dehydrogenase JHS95_11160 PF00849 RNA pseudouridylate synthase JHS95_11165 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) JHS95_11175 PF13307 Helicase C-terminal domain JHS95_11175 PF06733 DEAD_2 JHS95_11180 PF01925 Sulfite exporter TauE/SafE JHS95_11185 PF07445 Primosomal replication protein priC JHS95_11190 PF10689 Protein of unknown function (DUF2496) JHS95_11195 PF03372 Endonuclease/Exonuclease/phosphatase family JHS95_11205 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_11210 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_11215 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS95_11220 PF00005 ABC transporter JHS95_11235 PF02901 Pyruvate formate lyase-like JHS95_11235 PF01228 Glycine radical JHS95_11245 PF04055 Radical SAM superfamily JHS95_11255 PF03887 YfbU domain JHS95_11260 PF06798 PrkA serine protein kinase C-terminal domain JHS95_11260 PF08298 PrkA AAA domain JHS95_11265 PF04285 Protein of unknown function (DUF444) JHS95_11270 PF04293 SpoVR like protein JHS95_11275 PF02348 Cytidylyltransferase JHS95_11280 PF03966 Trm112p-like protein JHS95_11285 PF02606 Tetraacyldisaccharide-1-P 4'-kinase JHS95_11290 PF00664 ABC transporter transmembrane region JHS95_11290 PF00005 ABC transporter JHS95_11295 PF03772 Competence protein JHS95_11295 PF13567 Domain of unknown function (DUF4131) JHS95_11295 PF00753 Metallo-beta-lactamase superfamily JHS95_11305 PF02687 FtsX-like permease family JHS95_11305 PF12704 MacB-like periplasmic core domain JHS95_11310 PF00005 ABC transporter JHS95_11315 PF02687 FtsX-like permease family JHS95_11315 PF12704 MacB-like periplasmic core domain JHS95_11325 PF17757 UvrB interaction domain JHS95_11325 PF03461 TRCF domain JHS95_11325 PF02559 CarD-like/TRCF domain JHS95_11325 PF00270 DEAD/DEAH box helicase JHS95_11325 PF00271 Helicase conserved C-terminal domain JHS95_11340 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS95_11345 PF05728 Uncharacterised protein family (UPF0227) JHS95_11355 PF08139 Prokaryotic membrane lipoprotein lipid attachment site JHS95_11355 PF13036 Peptidoglycan-synthase activator LpoB JHS95_11370 PF01230 HIT domain JHS95_11375 PF00672 HAMP domain JHS95_11375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS95_11385 PF01048 Phosphorylase superfamily JHS95_11390 PF00403 Heavy-metal-associated domain JHS95_11395 PF00478 IMP dehydrogenase / GMP reductase domain JHS95_11395 PF00571 CBS domain JHS95_11405 PF00037 4Fe-4S binding domain JHS95_11405 PF11953 Domain of unknown function (DUF3470) JHS95_11410 PF00588 SpoU rRNA Methylase family JHS95_11410 PF08032 RNA 2'-O ribose methyltransferase substrate binding JHS95_11460 PF04411 PD-(D/E)XK nuclease superfamily JHS95_11470 PF01420 Type I restriction modification DNA specificity domain JHS95_11475 PF12161 HsdM N-terminal domain JHS95_11475 PF02384 N-6 DNA Methylase JHS95_11485 PF08463 EcoEI R protein C-terminal JHS95_11485 PF00271 Helicase conserved C-terminal domain JHS95_11485 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) JHS95_11485 PF04851 Type III restriction enzyme, res subunit JHS95_11525 PF17152 Periplasmic sensor domain JHS95_11525 PF00990 Diguanylate cyclase, GGDEF domain JHS95_11535 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JHS95_11540 PF09619 Type III secretion system lipoprotein chaperone (YscW) JHS95_11555 PF01037 Lrp/AsnC ligand binding domain JHS95_11555 PF13404 AsnC-type helix-turn-helix domain JHS95_11560 PF00291 Pyridoxal-phosphate dependent enzyme JHS95_11580 PF00873 AcrB/AcrD/AcrF family JHS95_11585 PF13533 Biotin-lipoyl like JHS95_11630 PF07690 Major Facilitator Superfamily JHS95_11635 PF03601 Conserved hypothetical protein 698 JHS95_11645 PF00501 AMP-binding enzyme JHS95_11645 PF13193 AMP-binding enzyme C-terminal domain JHS95_11650 PF13378 Enolase C-terminal domain-like JHS95_11655 PF00378 Enoyl-CoA hydratase/isomerase JHS95_11660 PF12697 Alpha/beta hydrolase family JHS95_11665 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JHS95_11665 PF16582 Middle domain of thiamine pyrophosphate JHS95_11665 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JHS95_11670 PF00425 chorismate binding enzyme JHS95_11675 PF00155 Aminotransferase class I and II JHS95_11685 PF13286 Phosphohydrolase-associated domain JHS95_11685 PF01966 HD domain JHS95_11705 PF13145 PPIC-type PPIASE domain JHS95_11710 PF00216 Bacterial DNA-binding protein JHS95_11715 PF00004 ATPase family associated with various cellular activities (AAA) JHS95_11715 PF05362 Lon protease (S16) C-terminal proteolytic domain JHS95_11715 PF02190 ATP-dependent protease La (LON) substrate-binding domain JHS95_11720 PF07724 AAA domain (Cdc48 subfamily) JHS95_11720 PF10431 C-terminal, D2-small domain, of ClpB protein JHS95_11720 PF06689 ClpX C4-type zinc finger JHS95_11725 PF00574 Clp protease JHS95_11730 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JHS95_11730 PF05698 Bacterial trigger factor protein (TF) C-terminus JHS95_11730 PF05697 Bacterial trigger factor protein (TF) JHS95_11740 PF02743 Cache domain JHS95_11740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_11740 PF00512 His Kinase A (phospho-acceptor) domain JHS95_11745 PF02954 Bacterial regulatory protein, Fis family JHS95_11745 PF00072 Response regulator receiver domain JHS95_11745 PF00158 Sigma-54 interaction domain JHS95_11755 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JHS95_11760 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component JHS95_11765 PF03480 Bacterial extracellular solute-binding protein, family 7 JHS95_11770 PF02696 Uncharacterized ACR, YdiU/UPF0061 family JHS95_11785 PF02386 Cation transport protein JHS95_11790 PF02080 TrkA-C domain JHS95_11790 PF02254 TrkA-N domain JHS95_11795 PF00270 DEAD/DEAH box helicase JHS95_11795 PF00271 Helicase conserved C-terminal domain JHS95_11800 PF03471 Transporter associated domain JHS95_11800 PF01595 Cyclin M transmembrane N-terminal domain JHS95_11800 PF00571 CBS domain JHS95_11810 PF04820 Tryptophan halogenase JHS95_11835 PF00550 Phosphopantetheine attachment site JHS95_11840 PF00550 Phosphopantetheine attachment site JHS95_11855 PF07977 FabA-like domain JHS95_11860 PF00535 Glycosyl transferase family 2 JHS95_11865 PF00221 Aromatic amino acid lyase JHS95_11890 PF00109 Beta-ketoacyl synthase, N-terminal domain JHS95_11890 PF02801 Beta-ketoacyl synthase, C-terminal domain JHS95_11895 PF07977 FabA-like domain JHS95_11905 PF00109 Beta-ketoacyl synthase, N-terminal domain JHS95_11905 PF02801 Beta-ketoacyl synthase, C-terminal domain JHS95_11920 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JHS95_11920 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JHS95_11925 PF01773 Na+ dependent nucleoside transporter N-terminus JHS95_11925 PF07662 Na+ dependent nucleoside transporter C-terminus JHS95_11925 PF07670 Nucleoside recognition JHS95_11930 PF03466 LysR substrate binding domain JHS95_11930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_11935 PF13406 Transglycosylase SLT domain JHS95_11940 PF05166 YcgL domain JHS95_11945 PF05209 Septum formation inhibitor MinC, N-terminal domain JHS95_11945 PF03775 Septum formation inhibitor MinC, C-terminal domain JHS95_11950 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JHS95_11955 PF03776 Septum formation topological specificity factor MinE JHS95_11960 PF00570 HRDC domain JHS95_11960 PF01612 3'-5' exonuclease JHS95_11965 PF13193 AMP-binding enzyme C-terminal domain JHS95_11965 PF00501 AMP-binding enzyme JHS95_11970 PF00561 alpha/beta hydrolase fold JHS95_11985 PF00814 Glycoprotease family JHS95_11990 PF13307 Helicase C-terminal domain JHS95_11990 PF04851 Type III restriction enzyme, res subunit JHS95_11995 PF01842 ACT domain JHS95_11995 PF00551 Formyl transferase JHS95_12000 PF06185 YecM protein JHS95_12005 PF03485 Arginyl tRNA synthetase N terminal domain JHS95_12005 PF05746 DALR anticodon binding domain JHS95_12005 PF00750 tRNA synthetases class I (R) JHS95_12020 PF07664 Ferrous iron transport protein B C terminus JHS95_12020 PF17910 FeoB cytosolic helical domain JHS95_12020 PF07670 Nucleoside recognition JHS95_12020 PF02421 Ferrous iron transport protein B JHS95_12025 PF04023 FeoA domain JHS95_12030 PF12833 Helix-turn-helix domain JHS95_12030 PF02311 AraC-like ligand binding domain JHS95_12035 PF01297 Zinc-uptake complex component A periplasmic JHS95_12040 PF00005 ABC transporter JHS95_12045 PF00950 ABC 3 transport family JHS95_12050 PF02629 CoA binding domain JHS95_12050 PF00549 CoA-ligase JHS95_12055 PF08442 ATP-grasp domain JHS95_12055 PF00549 CoA-ligase JHS95_12060 PF00364 Biotin-requiring enzyme JHS95_12060 PF02817 e3 binding domain JHS95_12060 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JHS95_12065 PF00676 Dehydrogenase E1 component JHS95_12065 PF16870 2-oxoglutarate dehydrogenase C-terminal JHS95_12065 PF02779 Transketolase, pyrimidine binding domain JHS95_12065 PF16078 2-oxoglutarate dehydrogenase N-terminus JHS95_12070 PF13085 2Fe-2S iron-sulfur cluster binding domain JHS95_12075 PF00890 FAD binding domain JHS95_12075 PF02910 Fumarate reductase flavoprotein C-term JHS95_12080 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JHS95_12085 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JHS95_12090 PF00285 Citrate synthase, C-terminal domain JHS95_12095 PF01784 NIF3 (NGG1p interacting factor 3) JHS95_12105 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JHS95_12105 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JHS95_12105 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JHS95_12105 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JHS95_12110 PF03925 SeqA protein C-terminal domain JHS95_12110 PF17206 SeqA protein N-terminal domain JHS95_12115 PF12697 Alpha/beta hydrolase family JHS95_12125 PF00258 Flavodoxin JHS95_12135 PF01475 Ferric uptake regulator family JHS95_12140 PF00749 tRNA synthetases class I (E and Q), catalytic domain JHS95_12140 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain JHS95_12145 PF00367 phosphotransferase system, EIIB JHS95_12145 PF02378 Phosphotransferase system, EIIC JHS95_12150 PF01979 Amidohydrolase family JHS95_12155 PF00480 ROK family JHS95_12155 PF01047 MarR family JHS95_12160 PF00999 Sodium/hydrogen exchanger family JHS95_12160 PF02254 TrkA-N domain JHS95_12165 PF00733 Asparagine synthase JHS95_12165 PF13537 Glutamine amidotransferase domain JHS95_12170 PF02357 Transcription termination factor nusG JHS95_12175 PF00854 POT family JHS95_12180 PF00762 Ferrochelatase JHS95_12185 PF05191 Adenylate kinase, active site lid JHS95_12190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_12190 PF00183 Hsp90 protein JHS95_12195 PF00486 Transcriptional regulatory protein, C terminal JHS95_12200 PF17323 Trans-membrane regulatory protein ToxS JHS95_12215 PF12850 Calcineurin-like phosphoesterase superfamily domain JHS95_12230 PF07556 Protein of unknown function (DUF1538) JHS95_12235 PF07556 Protein of unknown function (DUF1538) JHS95_12240 PF01370 NAD dependent epimerase/dehydratase family JHS95_12240 PF08338 Domain of unknown function (DUF1731) JHS95_12245 PF00106 short chain dehydrogenase JHS95_12250 PF00085 Thioredoxin JHS95_12255 PF01145 SPFH domain / Band 7 family JHS95_12255 PF16200 C-terminal region of band_7 JHS95_12270 PF03573 outer membrane porin, OprD family JHS95_12275 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JHS95_12275 PF03120 NAD-dependent DNA ligase OB-fold domain JHS95_12275 PF01653 NAD-dependent DNA ligase adenylation domain JHS95_12275 PF00533 BRCA1 C Terminus (BRCT) domain JHS95_12275 PF12826 Helix-hairpin-helix motif JHS95_12280 PF04354 ZipA, C-terminal FtsZ-binding domain JHS95_12290 PF00291 Pyridoxal-phosphate dependent enzyme JHS95_12295 PF00381 PTS HPr component phosphorylation site JHS95_12300 PF05524 PEP-utilising enzyme, N-terminal JHS95_12300 PF02896 PEP-utilising enzyme, TIM barrel domain JHS95_12300 PF00391 PEP-utilising enzyme, mobile domain JHS95_12305 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JHS95_12310 PF00700 Bacterial flagellin C-terminal helical region JHS95_12310 PF07196 Flagellin hook IN motif JHS95_12310 PF00669 Bacterial flagellin N-terminal helical region JHS95_12315 PF00669 Bacterial flagellin N-terminal helical region JHS95_12315 PF00700 Bacterial flagellin C-terminal helical region JHS95_12315 PF07196 Flagellin hook IN motif JHS95_12320 PF00700 Bacterial flagellin C-terminal helical region JHS95_12320 PF07196 Flagellin hook IN motif JHS95_12320 PF00669 Bacterial flagellin N-terminal helical region JHS95_12325 PF00669 Bacterial flagellin N-terminal helical region JHS95_12330 PF07196 Flagellin hook IN motif JHS95_12330 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JHS95_12335 PF10135 Rod binding protein JHS95_12335 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JHS95_12340 PF02119 Flagellar P-ring protein JHS95_12345 PF02107 Flagellar L-ring protein JHS95_12350 PF00460 Flagella basal body rod protein JHS95_12350 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JHS95_12355 PF00460 Flagella basal body rod protein JHS95_12355 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JHS95_12360 PF07559 Flagellar basal body protein FlaE JHS95_12360 PF00460 Flagella basal body rod protein JHS95_12360 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JHS95_12365 PF03963 Flagellar hook capping protein - N-terminal region JHS95_12365 PF13860 FlgD Ig-like domain JHS95_12365 PF13861 FlgD Tudor-like domain JHS95_12370 PF00460 Flagella basal body rod protein JHS95_12370 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JHS95_12375 PF00460 Flagella basal body rod protein JHS95_12380 PF01797 Transposase IS200 like JHS95_12385 PF01739 CheR methyltransferase, SAM binding domain JHS95_12385 PF03705 CheR methyltransferase, all-alpha domain JHS95_12390 PF01584 CheW-like domain JHS95_12390 PF00072 Response regulator receiver domain JHS95_12435 PF00691 OmpA family JHS95_12435 PF01389 OmpA-like transmembrane domain JHS95_12440 PF00749 tRNA synthetases class I (E and Q), catalytic domain JHS95_12445 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) JHS95_12450 PF13609 Gram-negative porin JHS95_12455 PF00403 Heavy-metal-associated domain JHS95_12470 PF03173 Putative carbohydrate binding domain JHS95_12470 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain JHS95_12470 PF00728 Glycosyl hydrolase family 20, catalytic domain JHS95_12470 PF02838 Glycosyl hydrolase family 20, domain 2 JHS95_12490 PF01713 Smr domain JHS95_12495 PF00849 RNA pseudouridylate synthase JHS95_12495 PF01479 S4 domain JHS95_12500 PF04073 Aminoacyl-tRNA editing domain JHS95_12505 PF02872 5'-nucleotidase, C-terminal domain JHS95_12505 PF00149 Calcineurin-like phosphoesterase JHS95_12510 PF00793 DAHP synthetase I family JHS95_12515 PF13369 Transglutaminase-like superfamily JHS95_12520 PF04247 Invasion gene expression up-regulator, SirB JHS95_12525 PF13847 Methyltransferase domain JHS95_12525 PF17827 PrmC N-terminal domain JHS95_12530 PF03462 PCRF domain JHS95_12530 PF00472 RF-1 domain JHS95_12535 PF01488 Shikimate / quinate 5-dehydrogenase JHS95_12535 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain JHS95_12535 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain JHS95_12540 PF03550 Outer membrane lipoprotein LolB JHS95_12545 PF08544 GHMP kinases C terminal JHS95_12545 PF00288 GHMP kinases N terminal domain JHS95_12550 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JHS95_12550 PF14572 Phosphoribosyl synthetase-associated domain JHS95_12555 PF01195 Peptidyl-tRNA hydrolase JHS95_12560 PF06071 Protein of unknown function (DUF933) JHS95_12560 PF01926 50S ribosome-binding GTPase JHS95_12675 PF01494 FAD binding domain JHS95_12680 PF01938 TRAM domain JHS95_12680 PF00919 Uncharacterized protein family UPF0004 JHS95_12680 PF04055 Radical SAM superfamily JHS95_12685 PF02562 PhoH-like protein JHS95_12690 PF02130 Uncharacterized protein family UPF0054 JHS95_12695 PF00571 CBS domain JHS95_12695 PF03471 Transporter associated domain JHS95_12700 PF00795 Carbon-nitrogen hydrolase JHS95_12705 PF07295 Zinc-ribbon containing domain JHS95_12710 PF08264 Anticodon-binding domain of tRNA JHS95_12710 PF00133 tRNA synthetases class I (I, L, M and V) JHS95_12710 PF13603 Leucyl-tRNA synthetase, Domain 2 JHS95_12715 PF04390 Lipopolysaccharide-assembly JHS95_12720 PF14840 Processivity clamp loader gamma complex DNA pol III C-term JHS95_12720 PF06144 DNA polymerase III, delta subunit JHS95_12730 PF02590 Predicted SPOUT methyltransferase JHS95_12735 PF03717 Penicillin-binding Protein dimerisation domain JHS95_12735 PF00905 Penicillin binding protein transpeptidase domain JHS95_12740 PF01098 Cell cycle protein JHS95_12745 PF03330 Lytic transglycolase JHS95_12745 PF05036 Sporulation related domain JHS95_12750 PF07943 Penicillin-binding protein 5, C-terminal domain JHS95_12750 PF00768 D-alanyl-D-alanine carboxypeptidase JHS95_12755 PF04359 Protein of unknown function (DUF493) JHS95_12760 PF03099 Biotin/lipoate A/B protein ligase family JHS95_12765 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family JHS95_12765 PF04055 Radical SAM superfamily JHS95_12770 PF01797 Transposase IS200 like JHS95_12775 PF00464 Serine hydroxymethyltransferase JHS95_12780 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JHS95_12780 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JHS95_12795 PF00128 Alpha amylase, catalytic domain JHS95_12795 PF16657 Maltogenic Amylase, C-terminal domain JHS95_12800 PF00367 phosphotransferase system, EIIB JHS95_12800 PF02378 Phosphotransferase system, EIIC JHS95_12805 PF00356 Bacterial regulatory proteins, lacI family JHS95_12815 PF09383 NIL domain JHS95_12815 PF00005 ABC transporter JHS95_12820 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_12825 PF03180 NLPA lipoprotein JHS95_12830 PF01797 Transposase IS200 like JHS95_12835 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) JHS95_12840 PF07348 Syd protein (SUKH-2) JHS95_12845 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term JHS95_12845 PF14489 QueF-like protein JHS95_12855 PF00990 Diguanylate cyclase, GGDEF domain JHS95_12860 PF11892 Domain of unknown function (DUF3412) JHS95_12860 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases JHS95_12860 PF03641 Possible lysine decarboxylase JHS95_12865 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JHS95_12865 PF01367 5'-3' exonuclease, C-terminal SAM fold JHS95_12870 PF01223 DNA/RNA non-specific endonuclease JHS95_12875 PF01728 FtsJ-like methyltransferase JHS95_12875 PF18125 RlmM ferredoxin-like domain JHS95_12880 PF04241 Protein of unknown function (DUF423) JHS95_12890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_12890 PF03466 LysR substrate binding domain JHS95_12895 PF02926 THUMP domain JHS95_12895 PF02568 Thiamine biosynthesis protein (ThiI) JHS95_12900 PF00691 OmpA family JHS95_12905 PF01618 MotA/TolQ/ExbB proton channel family JHS95_12910 PF02609 Exonuclease VII small subunit JHS95_12915 PF00348 Polyprenyl synthetase JHS95_12920 PF13292 1-deoxy-D-xylulose-5-phosphate synthase JHS95_12920 PF02780 Transketolase, C-terminal domain JHS95_12920 PF02779 Transketolase, pyrimidine binding domain JHS95_12925 PF04608 Phosphatidylglycerophosphatase A JHS95_12930 PF00586 AIR synthase related protein, N-terminal domain JHS95_12930 PF02769 AIR synthase related protein, C-terminal domain JHS95_12935 PF01029 NusB family JHS95_12940 PF00885 6,7-dimethyl-8-ribityllumazine synthase JHS95_12945 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JHS95_12945 PF00925 GTP cyclohydrolase II JHS95_12950 PF00677 Lumazine binding domain JHS95_12955 PF01872 RibD C-terminal domain JHS95_12955 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JHS95_12960 PF03477 ATP cone domain JHS95_12965 PF00171 Aldehyde dehydrogenase family JHS95_12970 PF00696 Amino acid kinase family JHS95_12970 PF01472 PUA domain JHS95_12975 PF07417 Sigma factor-binding transcriptional regulator Crl JHS95_12980 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) JHS95_12985 PF00156 Phosphoribosyl transferase domain JHS95_12990 PF00860 Permease family JHS95_12995 PF01546 Peptidase family M20/M25/M40 JHS95_12995 PF07687 Peptidase dimerisation domain JHS95_13020 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal JHS95_13020 PF02769 AIR synthase related protein, C-terminal domain JHS95_13020 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain JHS95_13025 PF01464 Transglycosylase SLT domain JHS95_13025 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS95_13030 PF14437 MafB19-like deaminase JHS95_13035 PF03806 AbgT putative transporter family JHS95_13055 PF07963 Prokaryotic N-terminal methylation motif JHS95_13055 PF00114 Pilin (bacterial filament) JHS95_13060 PF00114 Pilin (bacterial filament) JHS95_13060 PF07963 Prokaryotic N-terminal methylation motif JHS95_13065 PF00684 DnaJ central domain JHS95_13065 PF00226 DnaJ domain JHS95_13065 PF01556 DnaJ C terminal domain JHS95_13070 PF00012 Hsp70 protein JHS95_13075 PF00375 Sodium:dicarboxylate symporter family JHS95_13080 PF01025 GrpE JHS95_13085 PF01513 ATP-NAD kinase JHS95_13095 PF02463 RecF/RecN/SMC N terminal domain JHS95_13100 PF04355 SmpA / OmlA family JHS95_13105 PF03658 RnfH family Ubiquitin JHS95_13110 PF03364 Polyketide cyclase / dehydrase and lipid transport JHS95_13115 PF01668 SmpB protein JHS95_13145 PF02384 N-6 DNA Methylase JHS95_13205 PF01797 Transposase IS200 like JHS95_13265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_13265 PF03466 LysR substrate binding domain JHS95_13270 PF00583 Acetyltransferase (GNAT) family JHS95_13270 PF00795 Carbon-nitrogen hydrolase JHS95_13290 PF00202 Aminotransferase class-III JHS95_13295 PF01053 Cys/Met metabolism PLP-dependent enzyme JHS95_13300 PF07969 Amidohydrolase family JHS95_13315 PF03466 LysR substrate binding domain JHS95_13315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_13320 PF01266 FAD dependent oxidoreductase JHS95_13325 PF01235 Sodium:alanine symporter family JHS95_13335 PF01184 GPR1/FUN34/yaaH family JHS95_13340 PF06483 Chitinase C JHS95_13340 PF00704 Glycosyl hydrolases family 18 JHS95_13345 PF03553 Na+/H+ antiporter family JHS95_13350 PF00117 Glutamine amidotransferase class-I JHS95_13350 PF00958 GMP synthase C terminal domain JHS95_13350 PF02540 NAD synthase JHS95_13355 PF00478 IMP dehydrogenase / GMP reductase domain JHS95_13355 PF00571 CBS domain JHS95_13360 PF02601 Exonuclease VII, large subunit JHS95_13360 PF13742 OB-fold nucleic acid binding domain JHS95_13375 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JHS95_13375 PF01926 50S ribosome-binding GTPase JHS95_13380 PF13360 PQQ-like domain JHS95_13385 PF09976 Tetratricopeptide repeat-like domain JHS95_13390 PF03129 Anticodon binding domain JHS95_13390 PF13393 Histidyl-tRNA synthetase JHS95_13395 PF04551 GcpE protein JHS95_13400 PF13464 Domain of unknown function (DUF4115) JHS95_13405 PF04055 Radical SAM superfamily JHS95_13410 PF00334 Nucleoside diphosphate kinase JHS95_13415 PF00883 Cytosol aminopeptidase family, catalytic domain JHS95_13415 PF12404 Peptidase JHS95_13420 PF04384 Iron-sulphur cluster assembly JHS95_13425 PF00111 2Fe-2S iron-sulfur cluster binding domain JHS95_13430 PF00012 Hsp70 protein JHS95_13435 PF00226 DnaJ domain JHS95_13435 PF07743 HSCB C-terminal oligomerisation domain JHS95_13440 PF01521 Iron-sulphur cluster biosynthesis JHS95_13445 PF01592 NifU-like N terminal domain JHS95_13450 PF00266 Aminotransferase class-V JHS95_13455 PF02082 Transcriptional regulator JHS95_13460 PF00588 SpoU rRNA Methylase family JHS95_13465 PF00459 Inositol monophosphatase family JHS95_13470 PF02355 Protein export membrane protein JHS95_13470 PF07549 SecD/SecF GG Motif JHS95_13475 PF07549 SecD/SecF GG Motif JHS95_13475 PF13721 SecD export protein N-terminal TM region JHS95_13475 PF02355 Protein export membrane protein JHS95_13480 PF02699 Preprotein translocase subunit JHS95_13485 PF01702 Queuine tRNA-ribosyltransferase JHS95_13490 PF02547 Queuosine biosynthesis protein JHS95_13500 PF00571 CBS domain JHS95_13505 PF00463 Isocitrate lyase family JHS95_13510 PF01274 Malate synthase JHS95_13515 PF03466 LysR substrate binding domain JHS95_13515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_13520 PF00578 AhpC/TSA family JHS95_13520 PF10417 C-terminal domain of 1-Cys peroxiredoxin JHS95_13525 PF03932 CutC family JHS95_13530 PF03976 Polyphosphate kinase 2 (PPK2) JHS95_13535 PF01895 PhoU domain JHS95_13540 PF00005 ABC transporter JHS95_13545 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_13550 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_13555 PF13089 Polyphosphate kinase N-terminal domain JHS95_13555 PF02503 Polyphosphate kinase middle domain JHS95_13555 PF13090 Polyphosphate kinase C-terminal domain 2 JHS95_13555 PF17941 Polyphosphate kinase C-terminal domain 1 JHS95_13560 PF02541 Ppx/GppA phosphatase family JHS95_13565 PF12849 PBP superfamily domain JHS95_13570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_13570 PF00512 His Kinase A (phospho-acceptor) domain JHS95_13570 PF11808 Phosphate regulon sensor protein PhoR JHS95_13570 PF00989 PAS fold JHS95_13575 PF00486 Transcriptional regulatory protein, C terminal JHS95_13575 PF00072 Response regulator receiver domain JHS95_13580 PF04381 Putative exonuclease, RdgC JHS95_13585 PF16325 Peptidase family U32 C-terminal domain JHS95_13585 PF01136 Peptidase family U32 JHS95_13590 PF00037 4Fe-4S binding domain JHS95_13600 PF03411 Penicillin-insensitive murein endopeptidase JHS95_13645 PF00004 ATPase family associated with various cellular activities (AAA) JHS95_13645 PF07724 AAA domain (Cdc48 subfamily) JHS95_13645 PF10431 C-terminal, D2-small domain, of ClpB protein JHS95_13645 PF02861 Clp amino terminal domain, pathogenicity island component JHS95_13645 PF17871 AAA lid domain JHS95_13650 PF02578 Multi-copper polyphenol oxidoreductase laccase JHS95_13655 PF01479 S4 domain JHS95_13655 PF00849 RNA pseudouridylate synthase JHS95_13660 PF13525 Outer membrane lipoprotein JHS95_13665 PF01464 Transglycosylase SLT domain JHS95_13670 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JHS95_13675 PF01817 Chorismate mutase type II JHS95_13675 PF00800 Prephenate dehydratase JHS95_13680 PF01931 Protein of unknown function DUF84 JHS95_13685 PF01371 Trp repressor protein JHS95_13690 PF14718 Soluble lytic murein transglycosylase L domain JHS95_13690 PF01464 Transglycosylase SLT domain JHS95_13695 PF12848 ABC transporter JHS95_13695 PF00005 ABC transporter JHS95_13700 PF07238 PilZ domain JHS95_13705 PF04225 Opacity-associated protein A LysM-like domain JHS95_13705 PF01551 Peptidase family M23 JHS95_13710 PF01817 Chorismate mutase type II JHS95_13710 PF02153 Prephenate dehydrogenase JHS95_13715 PF00793 DAHP synthetase I family JHS95_13720 PF00933 Glycosyl hydrolase family 3 N terminal domain JHS95_13725 PF03702 Anhydro-N-acetylmuramic acid kinase JHS95_13730 PF13580 SIS domain JHS95_13745 PF02554 Carbon starvation protein CstA JHS95_13750 PF07694 5TMR of 5TMR-LYT JHS95_13750 PF06580 Histidine kinase JHS95_13755 PF00072 Response regulator receiver domain JHS95_13755 PF04397 LytTr DNA-binding domain JHS95_13760 PF02401 LytB protein JHS95_13765 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JHS95_13770 PF01252 Signal peptidase (SPase) II JHS95_13775 PF08264 Anticodon-binding domain of tRNA JHS95_13775 PF00133 tRNA synthetases class I (I, L, M and V) JHS95_13775 PF06827 Zinc finger found in FPG and IleRS JHS95_13780 PF06574 FAD synthetase JHS95_13780 PF01687 Riboflavin kinase JHS95_13785 PF03023 Lipid II flippase MurJ JHS95_13790 PF01649 Ribosomal protein S20 JHS95_13795 PF01022 Bacterial regulatory protein, arsR family JHS95_13800 PF03466 LysR substrate binding domain JHS95_13800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_13805 PF02690 Na+/Pi-cotransporter JHS95_13815 PF00303 Thymidylate synthase JHS95_13820 PF01790 Prolipoprotein diacylglyceryl transferase JHS95_13825 PF01925 Sulfite exporter TauE/SafE JHS95_13830 PF05524 PEP-utilising enzyme, N-terminal JHS95_13830 PF00391 PEP-utilising enzyme, mobile domain JHS95_13830 PF02896 PEP-utilising enzyme, TIM barrel domain JHS95_13830 PF01590 GAF domain JHS95_13835 PF00293 NUDIX domain JHS95_13840 PF02976 DNA mismatch repair enzyme MutH JHS95_13850 PF00248 Aldo/keto reductase family JHS95_13860 PF00072 Response regulator receiver domain JHS95_13860 PF02954 Bacterial regulatory protein, Fis family JHS95_13860 PF00158 Sigma-54 interaction domain JHS95_13865 PF01336 OB-fold nucleic acid binding domain JHS95_13865 PF00152 tRNA synthetases class II (D, K and N) JHS95_13875 PF01368 DHH family JHS95_13875 PF17768 RecJ OB domain JHS95_13875 PF02272 DHHA1 domain JHS95_13880 PF13098 Thioredoxin-like domain JHS95_13880 PF10411 Disulfide bond isomerase protein N-terminus JHS95_13885 PF02899 Phage integrase, N-terminal SAM-like domain JHS95_13885 PF00589 Phage integrase family JHS95_13890 PF00258 Flavodoxin JHS95_13895 PF05525 Branched-chain amino acid transport protein JHS95_13900 PF05175 Methyltransferase small domain JHS95_13905 PF00270 DEAD/DEAH box helicase JHS95_13905 PF00271 Helicase conserved C-terminal domain JHS95_13910 PF03883 Peroxide stress protein YaaA JHS95_13915 PF01235 Sodium:alanine symporter family JHS95_13930 PF03167 Uracil DNA glycosylase superfamily JHS95_13935 PF01261 Xylose isomerase-like TIM barrel JHS95_13940 PF01228 Glycine radical JHS95_13945 PF00291 Pyridoxal-phosphate dependent enzyme JHS95_13945 PF14821 Threonine synthase N terminus JHS95_13950 PF00288 GHMP kinases N terminal domain JHS95_13950 PF08544 GHMP kinases C terminal JHS95_13955 PF00742 Homoserine dehydrogenase JHS95_13955 PF13840 ACT domain JHS95_13955 PF01842 ACT domain JHS95_13955 PF03447 Homoserine dehydrogenase, NAD binding domain JHS95_13955 PF00696 Amino acid kinase family JHS95_13965 PF03737 Aldolase/RraA JHS95_13975 PF00072 Response regulator receiver domain JHS95_13975 PF00486 Transcriptional regulatory protein, C terminal JHS95_13985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_13985 PF00512 His Kinase A (phospho-acceptor) domain JHS95_13985 PF18415 Histidine kinase receptor ArcB trans-membrane domain JHS95_13985 PF01627 Hpt domain JHS95_13985 PF00072 Response regulator receiver domain JHS95_13985 PF00989 PAS fold JHS95_13990 PF00563 EAL domain JHS95_13990 PF01590 GAF domain JHS95_13990 PF00990 Diguanylate cyclase, GGDEF domain JHS95_13990 PF00360 Phytochrome region JHS95_13995 PF16199 Radical_SAM C-terminal domain JHS95_13995 PF04055 Radical SAM superfamily JHS95_14000 PF01493 GXGXG motif JHS95_14000 PF01645 Conserved region in glutamate synthase JHS95_14000 PF04898 Glutamate synthase central domain JHS95_14000 PF00310 Glutamine amidotransferases class-II JHS95_14005 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JHS95_14005 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS95_14010 PF01493 GXGXG motif JHS95_14010 PF00310 Glutamine amidotransferases class-II JHS95_14010 PF04898 Glutamate synthase central domain JHS95_14010 PF01645 Conserved region in glutamate synthase JHS95_14015 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JHS95_14015 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS95_14025 PF01048 Phosphorylase superfamily JHS95_14030 PF03186 CobD/Cbib protein JHS95_14030 PF17113 Regulatory signalling modulator protein AmpE JHS95_14035 PF01497 Periplasmic binding protein JHS95_14040 PF03458 UPF0126 domain JHS95_14045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_14045 PF03466 LysR substrate binding domain JHS95_14050 PF01925 Sulfite exporter TauE/SafE JHS95_14065 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JHS95_14065 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain JHS95_14065 PF02142 MGS-like domain JHS95_14070 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain JHS95_14070 PF00117 Glutamine amidotransferase class-I JHS95_14075 PF05173 Dihydrodipicolinate reductase, C-terminus JHS95_14075 PF01113 Dihydrodipicolinate reductase, N-terminus JHS95_14080 PF00293 NUDIX domain JHS95_14085 PF07516 SecA Wing and Scaffold domain JHS95_14085 PF07517 SecA DEAD-like domain JHS95_14085 PF02810 SEC-C motif JHS95_14085 PF01043 SecA preprotein cross-linking domain JHS95_14095 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase JHS95_14100 PF12327 FtsZ family, C-terminal domain JHS95_14100 PF00091 Tubulin/FtsZ family, GTPase domain JHS95_14105 PF02491 SHS2 domain inserted in FTSA JHS95_14110 PF08478 POTRA domain, FtsQ-type JHS95_14110 PF03799 Cell division protein FtsQ JHS95_14115 PF02875 Mur ligase family, glutamate ligase domain JHS95_14115 PF01225 Mur ligase family, catalytic domain JHS95_14115 PF08245 Mur ligase middle domain JHS95_14120 PF04101 Glycosyltransferase family 28 C-terminal domain JHS95_14120 PF03033 Glycosyltransferase family 28 N-terminal domain JHS95_14125 PF01098 Cell cycle protein JHS95_14130 PF02875 Mur ligase family, glutamate ligase domain JHS95_14130 PF08245 Mur ligase middle domain JHS95_14135 PF00953 Glycosyl transferase family 4 JHS95_14135 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 JHS95_14140 PF01225 Mur ligase family, catalytic domain JHS95_14140 PF02875 Mur ligase family, glutamate ligase domain JHS95_14140 PF08245 Mur ligase middle domain JHS95_14145 PF02875 Mur ligase family, glutamate ligase domain JHS95_14145 PF08245 Mur ligase middle domain JHS95_14145 PF01225 Mur ligase family, catalytic domain JHS95_14150 PF03717 Penicillin-binding Protein dimerisation domain JHS95_14150 PF00905 Penicillin binding protein transpeptidase domain JHS95_14155 PF04999 Cell division protein FtsL JHS95_14160 PF01795 MraW methylase family JHS95_14170 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JHS95_14175 PF04348 LppC putative lipoprotein JHS95_14180 PF02021 Uncharacterised protein family UPF0102 JHS95_14185 PF13580 SIS domain JHS95_14190 PF04972 BON domain JHS95_14195 PF04386 Stringent starvation protein B JHS95_14200 PF00043 Glutathione S-transferase, C-terminal domain JHS95_14200 PF02798 Glutathione S-transferase, N-terminal domain JHS95_14205 PF02167 Cytochrome C1 family JHS95_14210 PF00032 Cytochrome b(C-terminal)/b6/petD JHS95_14210 PF00033 Cytochrome b/b6/petB JHS95_14215 PF00355 Rieske [2Fe-2S] domain JHS95_14215 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal JHS95_14220 PF00380 Ribosomal protein S9/S16 JHS95_14225 PF00572 Ribosomal protein L13 JHS95_14230 PF03969 AFG1-like ATPase JHS95_14235 PF06295 Protein of unknown function (DUF1043) JHS95_14240 PF00595 PDZ domain JHS95_14245 PF13180 PDZ domain JHS95_14250 PF03989 DNA gyrase C-terminal domain, beta-propeller JHS95_14250 PF00521 DNA gyrase/topoisomerase IV, subunit A JHS95_14255 PF01751 Toprim domain JHS95_14255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_14255 PF00986 DNA gyrase B subunit, carboxyl terminus JHS95_14255 PF00204 DNA gyrase B JHS95_14260 PF05728 Uncharacterised protein family (UPF0227) JHS95_14265 PF00149 Calcineurin-like phosphoesterase JHS95_14270 PF06853 Protein of unknown function (DUF1249) JHS95_14275 PF00293 NUDIX domain JHS95_14280 PF02321 Outer membrane efflux protein JHS95_14285 PF01467 Cytidylyltransferase-like JHS95_14285 PF00294 pfkB family carbohydrate kinase JHS95_14290 PF08335 GlnD PII-uridylyltransferase JHS95_14290 PF03710 Glutamate-ammonia ligase adenylyltransferase JHS95_14295 PF00672 HAMP domain JHS95_14295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS95_14305 PF01928 CYTH domain JHS95_14310 PF01865 Protein of unknown function DUF47 JHS95_14315 PF01384 Phosphate transporter family JHS95_14320 PF08239 Bacterial SH3 domain JHS95_14330 PF01471 Putative peptidoglycan binding domain JHS95_14330 PF13401 AAA domain JHS95_14335 PF01966 HD domain JHS95_14335 PF01743 Poly A polymerase head domain JHS95_14335 PF12627 Probable RNA and SrmB- binding site of polymerase A JHS95_14340 PF02673 Bacitracin resistance protein BacA JHS95_14345 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JHS95_14350 PF02152 Dihydroneopterin aldolase JHS95_14355 PF02660 Glycerol-3-phosphate acyltransferase JHS95_14360 PF12697 Alpha/beta hydrolase family JHS95_14365 PF00814 Glycoprotease family JHS95_14370 PF01165 Ribosomal protein S21 JHS95_14375 PF09424 Yqey-like protein JHS95_14380 PF10410 DnaB-helicase binding domain of primase JHS95_14380 PF08278 DNA primase DnaG DnaB-binding JHS95_14380 PF08275 DNA primase catalytic core, N-terminal domain JHS95_14380 PF01807 CHC2 zinc finger JHS95_14385 PF04545 Sigma-70, region 4 JHS95_14385 PF04539 Sigma-70 region 3 JHS95_14385 PF04542 Sigma-70 region 2 JHS95_14385 PF00140 Sigma-70 factor, region 1.2 JHS95_14385 PF03979 Sigma-70 factor, region 1.1 JHS95_14385 PF04546 Sigma-70, non-essential region JHS95_14410 PF02899 Phage integrase, N-terminal SAM-like domain JHS95_14410 PF00589 Phage integrase family JHS95_14480 PF03180 NLPA lipoprotein JHS95_14510 PF02378 Phosphotransferase system, EIIC JHS95_14510 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JHS95_14510 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JHS95_14515 PF08125 Mannitol dehydrogenase C-terminal domain JHS95_14515 PF01232 Mannitol dehydrogenase Rossmann domain JHS95_14520 PF05068 Mannitol repressor JHS95_14530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_14530 PF00672 HAMP domain JHS95_14530 PF00512 His Kinase A (phospho-acceptor) domain JHS95_14535 PF00486 Transcriptional regulatory protein, C terminal JHS95_14535 PF00072 Response regulator receiver domain JHS95_14545 PF01380 SIS domain JHS95_14550 PF08220 DeoR-like helix-turn-helix domain JHS95_14550 PF00455 DeoR C terminal sensor domain JHS95_14555 PF02887 Pyruvate kinase, alpha/beta domain JHS95_14555 PF00224 Pyruvate kinase, barrel domain JHS95_14565 PF00990 Diguanylate cyclase, GGDEF domain JHS95_14570 PF10369 Small subunit of acetolactate synthase JHS95_14575 PF00205 Thiamine pyrophosphate enzyme, central domain JHS95_14575 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JHS95_14575 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JHS95_14580 PF00501 AMP-binding enzyme JHS95_14585 PF03466 LysR substrate binding domain JHS95_14585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_14595 PF01569 PAP2 superfamily JHS95_14605 PF08502 LeuA allosteric (dimerisation) domain JHS95_14605 PF00682 HMGL-like JHS95_14610 PF00180 Isocitrate/isopropylmalate dehydrogenase JHS95_14615 PF00330 Aconitase family (aconitate hydratase) JHS95_14620 PF00694 Aconitase C-terminal domain JHS95_14630 PF00226 DnaJ domain JHS95_14630 PF05099 Tellurite resistance protein TerB JHS95_14635 PF04453 LPS transport system D JHS95_14635 PF03968 OstA-like protein JHS95_14640 PF09312 SurA N-terminal domain JHS95_14645 PF04166 Pyridoxal phosphate biosynthetic protein PdxA JHS95_14650 PF00398 Ribosomal RNA adenine dimethylase JHS95_14655 PF04379 ApaG domain JHS95_14660 PF00149 Calcineurin-like phosphoesterase JHS95_14665 PF00186 Dihydrofolate reductase JHS95_14670 PF12821 Threonine/Serine exporter, ThrE JHS95_14675 PF06738 Putative threonine/serine exporter JHS95_14680 PF01018 GTP1/OBG JHS95_14680 PF01926 50S ribosome-binding GTPase JHS95_14685 PF01016 Ribosomal L27 protein JHS95_14690 PF00829 Ribosomal prokaryotic L21 protein JHS95_14695 PF00348 Polyprenyl synthetase JHS95_14705 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JHS95_14705 PF00056 lactate/malate dehydrogenase, NAD binding domain JHS95_14710 PF02863 Arginine repressor, C-terminal domain JHS95_14710 PF01316 Arginine repressor, DNA binding domain JHS95_14715 PF16868 NMT1-like family JHS95_14730 PF00005 ABC transporter JHS95_14735 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_14745 PF02441 Flavoprotein JHS95_14750 PF01225 Mur ligase family, catalytic domain JHS95_14750 PF02875 Mur ligase family, glutamate ligase domain JHS95_14750 PF08245 Mur ligase middle domain JHS95_14755 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain JHS95_14760 PF00719 Inorganic pyrophosphatase JHS95_14770 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like JHS95_14775 PF04357 TamB, inner membrane protein subunit of TAM complex JHS95_14780 PF17243 POTRA domain TamA domain 1 JHS95_14780 PF01103 Surface antigen JHS95_14785 PF01625 Peptide methionine sulfoxide reductase JHS95_14790 PF06526 Protein of unknown function (DUF1107) JHS95_14795 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) JHS95_14800 PF10795 Protein of unknown function (DUF2607) JHS95_14810 PF00005 ABC transporter JHS95_14835 PF02080 TrkA-C domain JHS95_14835 PF03600 Citrate transporter JHS95_14840 PF00009 Elongation factor Tu GTP binding domain JHS95_14845 PF01507 Phosphoadenosine phosphosulfate reductase family JHS95_14850 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JHS95_14850 PF14824 Sirohaem biosynthesis protein central JHS95_14850 PF10414 Sirohaem synthase dimerisation region JHS95_14855 PF00149 Calcineurin-like phosphoesterase JHS95_14855 PF02872 5'-nucleotidase, C-terminal domain JHS95_14865 PF00270 DEAD/DEAH box helicase JHS95_14865 PF00271 Helicase conserved C-terminal domain JHS95_14865 PF03880 DbpA RNA binding domain JHS95_14870 PF13673 Acetyltransferase (GNAT) domain JHS95_14880 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JHS95_14880 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JHS95_14890 PF01196 Ribosomal protein L17 JHS95_14895 PF01000 RNA polymerase Rpb3/RpoA insert domain JHS95_14895 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain JHS95_14895 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain JHS95_14900 PF01479 S4 domain JHS95_14900 PF00163 Ribosomal protein S4/S9 N-terminal domain JHS95_14905 PF00411 Ribosomal protein S11 JHS95_14910 PF00416 Ribosomal protein S13/S18 JHS95_14915 PF00444 Ribosomal protein L36 JHS95_14920 PF00344 SecY translocase JHS95_14925 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A JHS95_14930 PF00327 Ribosomal protein L30p/L7e JHS95_14935 PF03719 Ribosomal protein S5, C-terminal domain JHS95_14935 PF00333 Ribosomal protein S5, N-terminal domain JHS95_14940 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JHS95_14945 PF00347 Ribosomal protein L6 JHS95_14950 PF00410 Ribosomal protein S8 JHS95_14955 PF00253 Ribosomal protein S14p/S29e JHS95_14960 PF00281 Ribosomal protein L5 JHS95_14960 PF00673 ribosomal L5P family C-terminus JHS95_14965 PF00467 KOW motif JHS95_14965 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JHS95_14970 PF00238 Ribosomal protein L14p/L23e JHS95_14975 PF00366 Ribosomal protein S17 JHS95_14980 PF00831 Ribosomal L29 protein JHS95_14985 PF00252 Ribosomal protein L16p/L10e JHS95_14990 PF00189 Ribosomal protein S3, C-terminal domain JHS95_14990 PF07650 KH domain JHS95_14995 PF00237 Ribosomal protein L22p/L17e JHS95_15000 PF00203 Ribosomal protein S19 JHS95_15005 PF00181 Ribosomal Proteins L2, RNA binding domain JHS95_15005 PF03947 Ribosomal Proteins L2, C-terminal domain JHS95_15010 PF00276 Ribosomal protein L23 JHS95_15015 PF00573 Ribosomal protein L4/L1 family JHS95_15020 PF00297 Ribosomal protein L3 JHS95_15025 PF00338 Ribosomal protein S10p/S20e JHS95_15030 PF01197 Ribosomal protein L31 JHS95_15035 PF00270 DEAD/DEAH box helicase JHS95_15035 PF00271 Helicase conserved C-terminal domain JHS95_15035 PF17764 3′ DNA-binding domain (3′BD) JHS95_15035 PF18074 Primosomal protein N C-terminal domain JHS95_15035 PF18319 PriA DNA helicase Cys-rich region (CRR) domain JHS95_15040 PF00356 Bacterial regulatory proteins, lacI family JHS95_15050 PF00227 Proteasome subunit JHS95_15055 PF00004 ATPase family associated with various cellular activities (AAA) JHS95_15055 PF07724 AAA domain (Cdc48 subfamily) JHS95_15070 PF04002 RadC-like JAB domain JHS95_15100 PF01040 UbiA prenyltransferase family JHS95_15105 PF03737 Aldolase/RraA JHS95_15110 PF06005 Cell division protein ZapB JHS95_15115 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded JHS95_15120 PF00455 DeoR C terminal sensor domain JHS95_15120 PF08220 DeoR-like helix-turn-helix domain JHS95_15140 PF00121 Triosephosphate isomerase JHS95_15145 PF10996 Beta-Casp domain JHS95_15145 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain JHS95_15145 PF00753 Metallo-beta-lactamase superfamily JHS95_15150 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JHS95_15150 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JHS95_15150 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JHS95_15155 PF02719 Polysaccharide biosynthesis protein JHS95_15160 PF02397 Bacterial sugar transferase JHS95_15165 PF01370 NAD dependent epimerase/dehydratase family JHS95_15175 PF02350 UDP-N-acetylglucosamine 2-epimerase JHS95_15180 PF04321 RmlD substrate binding domain JHS95_15185 PF08485 Polysaccharide biosynthesis protein C-terminal JHS95_15185 PF02719 Polysaccharide biosynthesis protein JHS95_15250 PF06082 Exopolysaccharide biosynthesis protein YbjH JHS95_15255 PF01370 NAD dependent epimerase/dehydratase family JHS95_15260 PF03279 Bacterial lipid A biosynthesis acyltransferase JHS95_15265 PF01075 Glycosyltransferase family 9 (heptosyltransferase) JHS95_15270 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) JHS95_15280 PF13439 Glycosyltransferase Family 4 JHS95_15280 PF00534 Glycosyl transferases group 1 JHS95_15295 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JHS95_15300 PF01575 MaoC like domain JHS95_15305 PF00132 Bacterial transferase hexapeptide (six repeats) JHS95_15310 PF05523 WxcM-like, C-terminal JHS95_15315 PF00483 Nucleotidyl transferase JHS95_15320 PF16363 GDP-mannose 4,6 dehydratase JHS95_15330 PF01219 Prokaryotic diacylglycerol kinase JHS95_15335 PF01075 Glycosyltransferase family 9 (heptosyltransferase) JHS95_15340 PF00535 Glycosyl transferase family 2 JHS95_15345 PF00534 Glycosyl transferases group 1 JHS95_15345 PF13439 Glycosyltransferase Family 4 JHS95_15350 PF01467 Cytidylyltransferase-like JHS95_15355 PF05686 Glycosyl transferase family 90 JHS95_15360 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JHS95_15360 PF06827 Zinc finger found in FPG and IleRS JHS95_15360 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JHS95_15370 PF00471 Ribosomal protein L33 JHS95_15375 PF00830 Ribosomal L28 family JHS95_15380 PF04002 RadC-like JAB domain JHS95_15385 PF00672 HAMP domain JHS95_15385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS95_15385 PF17200 Single Cache domain 2 JHS95_15390 PF02441 Flavoprotein JHS95_15390 PF04127 DNA / pantothenate metabolism flavoprotein JHS95_15395 PF00440 Bacterial regulatory proteins, tetR family JHS95_15400 PF03279 Bacterial lipid A biosynthesis acyltransferase JHS95_15405 PF00156 Phosphoribosyl transferase domain JHS95_15410 PF01138 3' exoribonuclease family, domain 1 JHS95_15410 PF03725 3' exoribonuclease family, domain 2 JHS95_15415 PF08340 Domain of unknown function (DUF1732) JHS95_15415 PF03755 YicC-like family, N-terminal region JHS95_15425 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS95_15425 PF00005 ABC transporter JHS95_15430 PF00005 ABC transporter JHS95_15430 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS95_15435 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JHS95_15440 PF12911 N-terminal TM domain of oligopeptide transport permease C JHS95_15440 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_15445 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_15450 PF07715 TonB-dependent Receptor Plug Domain JHS95_15450 PF00593 TonB dependent receptor JHS95_15465 PF01618 MotA/TolQ/ExbB proton channel family JHS95_15470 PF02472 Biopolymer transport protein ExbD/TolR JHS95_15485 PF00625 Guanylate kinase JHS95_15490 PF01192 RNA polymerase Rpb6 JHS95_15495 PF13291 ACT domain JHS95_15495 PF04607 Region found in RelA / SpoT proteins JHS95_15495 PF02824 TGS domain JHS95_15500 PF00588 SpoU rRNA Methylase family JHS95_15500 PF12105 SpoU, rRNA methylase, C-terminal JHS95_15505 PF00270 DEAD/DEAH box helicase JHS95_15505 PF00271 Helicase conserved C-terminal domain JHS95_15505 PF17191 RecG wedge domain JHS95_15510 PF00860 Permease family JHS95_15515 PF00672 HAMP domain JHS95_15515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_15515 PF00512 His Kinase A (phospho-acceptor) domain JHS95_15520 PF00486 Transcriptional regulatory protein, C terminal JHS95_15520 PF00072 Response regulator receiver domain JHS95_15530 PF01272 Transcription elongation factor, GreA/GreB, C-term JHS95_15530 PF03449 Transcription elongation factor, N-terminal JHS95_15540 PF17674 HHH domain JHS95_15540 PF00575 S1 RNA binding domain JHS95_15540 PF09371 Tex-like protein N-terminal domain JHS95_15540 PF16921 Tex protein YqgF-like domain JHS95_15550 PF00561 alpha/beta hydrolase fold JHS95_15555 PF00156 Phosphoribosyl transferase domain JHS95_15560 PF01521 Iron-sulphur cluster biosynthesis JHS95_15560 PF01106 NifU-like domain JHS95_15565 PF00293 NUDIX domain JHS95_15570 PF00459 Inositol monophosphatase family JHS95_15575 PF01203 Type II secretion system (T2SS), protein N JHS95_15580 PF04612 Type II secretion system (T2SS), protein M JHS95_15585 PF12693 GspL periplasmic domain JHS95_15585 PF05134 Type II secretion system (T2SS), protein L JHS95_15590 PF03934 Type II secretion system (T2SS), protein K JHS95_15595 PF07963 Prokaryotic N-terminal methylation motif JHS95_15595 PF11612 Type II secretion system (T2SS), protein J JHS95_15600 PF07963 Prokaryotic N-terminal methylation motif JHS95_15600 PF02501 Type II secretion system (T2SS), protein I JHS95_15605 PF12019 Type II transport protein GspH JHS95_15610 PF08334 Type II secretion system (T2SS), protein G JHS95_15610 PF07963 Prokaryotic N-terminal methylation motif JHS95_15615 PF00482 Type II secretion system (T2SS), protein F JHS95_15620 PF00437 Type II/IV secretion system protein JHS95_15625 PF00263 Bacterial type II and III secretion system protein JHS95_15625 PF03958 Bacterial type II/III secretion system short domain JHS95_15630 PF11356 Type II secretion system protein C JHS95_15635 PF01479 S4 domain JHS95_15640 PF01430 Hsp33 protein JHS95_15645 PF01293 Phosphoenolpyruvate carboxykinase JHS95_15655 PF09500 Putative thioesterase (yiiD_Cterm) JHS95_15655 PF00583 Acetyltransferase (GNAT) family JHS95_15660 PF02580 D-Tyr-tRNA(Tyr) deacylase JHS95_15665 PF03631 Virulence factor BrkB JHS95_15680 PF00679 Elongation factor G C-terminus JHS95_15680 PF00009 Elongation factor Tu GTP binding domain JHS95_15680 PF03144 Elongation factor Tu domain 2 JHS95_15685 PF00120 Glutamine synthetase, catalytic domain JHS95_15685 PF03951 Glutamine synthetase, beta-Grasp domain JHS95_15695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_15695 PF00512 His Kinase A (phospho-acceptor) domain JHS95_15695 PF00989 PAS fold JHS95_15700 PF00158 Sigma-54 interaction domain JHS95_15700 PF00072 Response regulator receiver domain JHS95_15700 PF02954 Bacterial regulatory protein, Fis family JHS95_15705 PF03707 Bacterial signalling protein N terminal repeat JHS95_15705 PF00990 Diguanylate cyclase, GGDEF domain JHS95_15705 PF00563 EAL domain JHS95_15710 PF00962 Adenosine/AMP deaminase JHS95_15715 PF04055 Radical SAM superfamily JHS95_15715 PF06969 HemN C-terminal domain JHS95_15720 PF10675 Protein of unknown function (DUF2489) JHS95_15725 PF04220 Der GTPase activator (YihI) JHS95_15735 PF00034 Cytochrome c JHS95_15740 PF01926 50S ribosome-binding GTPase JHS95_15745 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JHS95_15745 PF01612 3'-5' exonuclease JHS95_15745 PF00476 DNA polymerase family A JHS95_15745 PF01367 5'-3' exonuclease, C-terminal SAM fold JHS95_15760 PF00490 Delta-aminolevulinic acid dehydratase JHS95_15765 PF01026 TatD related DNase JHS95_15770 PF00902 Sec-independent protein translocase protein (TatC) JHS95_15775 PF02416 mttA/Hcf106 family JHS95_15780 PF02416 mttA/Hcf106 family JHS95_15785 PF03109 ABC1 family JHS95_15790 PF02036 SCP-2 sterol transfer family JHS95_15795 PF01209 ubiE/COQ5 methyltransferase family JHS95_15800 PF02646 RmuC family JHS95_15810 PF03707 Bacterial signalling protein N terminal repeat JHS95_15810 PF00990 Diguanylate cyclase, GGDEF domain JHS95_15810 PF00563 EAL domain JHS95_15815 PF01594 AI-2E family transporter JHS95_15865 PF04972 BON domain JHS95_15870 PF02954 Bacterial regulatory protein, Fis family JHS95_15870 PF01590 GAF domain JHS95_15870 PF00158 Sigma-54 interaction domain JHS95_15880 PF10625 Universal stress protein B (UspB) JHS95_15885 PF00210 Ferritin-like domain JHS95_15890 PF00582 Universal stress protein family JHS95_15895 PF00892 EamA-like transporter family JHS95_15905 PF04445 Putative SAM-dependent methyltransferase JHS95_15910 PF00563 EAL domain JHS95_15910 PF00990 Diguanylate cyclase, GGDEF domain JHS95_15910 PF08448 PAS fold JHS95_15915 PF01037 Lrp/AsnC ligand binding domain JHS95_15920 PF01432 Peptidase family M3 JHS95_15925 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ JHS95_15930 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS95_15930 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JHS95_15935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_15935 PF03466 LysR substrate binding domain JHS95_15940 PF01048 Phosphorylase superfamily JHS95_15945 PF01081 KDPG and KHG aldolase JHS95_15950 PF02447 GntP family permease JHS95_15955 PF01202 Shikimate kinase JHS95_15960 PF00920 Dehydratase family JHS95_15965 PF00893 Small Multidrug Resistance protein JHS95_15970 PF00893 Small Multidrug Resistance protein JHS95_15975 PF03466 LysR substrate binding domain JHS95_15975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_15980 PF00356 Bacterial regulatory proteins, lacI family JHS95_15980 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JHS95_15985 PF00069 Protein kinase domain JHS95_16015 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_16015 PF12911 N-terminal TM domain of oligopeptide transport permease C JHS95_16020 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_16025 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JHS95_16030 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS95_16030 PF00005 ABC transporter JHS95_16035 PF13419 Haloacid dehalogenase-like hydrolase JHS95_16065 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JHS95_16070 PF00580 UvrD/REP helicase N-terminal domain JHS95_16070 PF13361 UvrD-like helicase C-terminal domain JHS95_16075 PF16295 Tetracyclin repressor-like, C-terminal domain JHS95_16075 PF00440 Bacterial regulatory proteins, tetR family JHS95_16080 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS95_16085 PF00873 AcrB/AcrD/AcrF family JHS95_16090 PF04380 Membrane fusogenic activity JHS95_16095 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain JHS95_16095 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain JHS95_16100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_16100 PF03466 LysR substrate binding domain JHS95_16135 PF00132 Bacterial transferase hexapeptide (six repeats) JHS95_16140 PF07369 Protein of unknown function (DUF1488) JHS95_16145 PF18317 Shikimate 5'-dehydrogenase C-terminal domain JHS95_16145 PF01488 Shikimate / quinate 5-dehydrogenase JHS95_16145 PF08501 Shikimate dehydrogenase substrate binding domain JHS95_16150 PF01218 Coproporphyrinogen III oxidase JHS95_16155 PF01300 Telomere recombination JHS95_16160 PF00731 AIR carboxylase JHS95_16165 PF02222 ATP-grasp domain JHS95_16165 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain JHS95_16170 PF01396 Topoisomerase DNA binding C4 zinc finger JHS95_16175 PF04361 Protein of unknown function (DUF494) JHS95_16180 PF02481 DNA recombination-mediator protein A JHS95_16180 PF17782 DprA winged helix domain JHS95_16190 PF01327 Polypeptide deformylase JHS95_16195 PF02911 Formyl transferase, C-terminal domain JHS95_16195 PF00551 Formyl transferase JHS95_16200 PF01189 16S rRNA methyltransferase RsmB/F JHS95_16200 PF01029 NusB family JHS95_16205 PF02254 TrkA-N domain JHS95_16205 PF02080 TrkA-C domain JHS95_16210 PF02386 Cation transport protein JHS95_16220 PF03006 Haemolysin-III related JHS95_16225 PF07070 SpoOM protein JHS95_16235 PF06288 Protein of unknown function (DUF1040) JHS95_16240 PF13746 4Fe-4S dicluster domain JHS95_16240 PF12801 4Fe-4S binding domain JHS95_16240 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase JHS95_16245 PF01636 Phosphotransferase enzyme family JHS95_16250 PF01323 DSBA-like thioredoxin domain JHS95_16255 PF01553 Acyltransferase JHS95_16265 PF01078 Magnesium chelatase, subunit ChlI JHS95_16265 PF13335 Magnesium chelatase, subunit ChlI C-terminal JHS95_16270 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JHS95_16270 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JHS95_16270 PF00205 Thiamine pyrophosphate enzyme, central domain JHS95_16280 PF01063 Amino-transferase class IV JHS95_16285 PF00920 Dehydratase family JHS95_16290 PF00291 Pyridoxal-phosphate dependent enzyme JHS95_16290 PF00585 C-terminal regulatory domain of Threonine dehydratase JHS95_16295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_16295 PF03466 LysR substrate binding domain JHS95_16300 PF07690 Major Facilitator Superfamily JHS95_16305 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS95_16310 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_16315 PF00132 Bacterial transferase hexapeptide (six repeats) JHS95_16315 PF12804 MobA-like NTP transferase domain JHS95_16320 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain JHS95_16320 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain JHS95_16325 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JHS95_16325 PF02874 ATP synthase alpha/beta family, beta-barrel domain JHS95_16330 PF00231 ATP synthase JHS95_16335 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JHS95_16335 PF00306 ATP synthase alpha/beta chain, C terminal domain JHS95_16335 PF02874 ATP synthase alpha/beta family, beta-barrel domain JHS95_16340 PF00213 ATP synthase delta (OSCP) subunit JHS95_16345 PF00430 ATP synthase B/B' CF(0) JHS95_16350 PF00137 ATP synthase subunit C JHS95_16355 PF00119 ATP synthase A chain JHS95_16360 PF03899 ATP synthase I chain JHS95_16365 PF02195 ParB-like nuclease domain JHS95_16365 PF17762 HTH domain found in ParB protein JHS95_16370 PF13614 AAA domain JHS95_16375 PF02527 rRNA small subunit methyltransferase G JHS95_16380 PF01134 Glucose inhibited division protein A JHS95_16380 PF13932 GidA associated domain JHS95_16385 PF00258 Flavodoxin JHS95_16390 PF01926 50S ribosome-binding GTPase JHS95_16390 PF12631 MnmE helical domain JHS95_16390 PF10396 GTP-binding protein TrmE N-terminus JHS95_16395 PF02096 60Kd inner membrane protein JHS95_16395 PF14849 YidC periplasmic domain JHS95_16400 PF01809 Putative membrane protein insertion efficiency factor JHS95_16405 PF00825 Ribonuclease P JHS95_16410 PF00468 Ribosomal protein L34 JHS95_16415 PF00005 ABC transporter JHS95_16420 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_16425 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS95_16435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_16435 PF07730 Histidine kinase JHS95_16435 PF05231 MASE1 JHS95_16440 PF00196 Bacterial regulatory proteins, luxR family JHS95_16440 PF00072 Response regulator receiver domain JHS95_16445 PF07690 Major Facilitator Superfamily JHS95_16450 PF02634 FdhD/NarQ family JHS95_16455 PF03466 LysR substrate binding domain JHS95_16455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_16460 PF00384 Molybdopterin oxidoreductase JHS95_16465 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS95_16465 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JHS95_16480 PF04143 Sulphur transport JHS95_16490 PF00873 AcrB/AcrD/AcrF family JHS95_16495 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS95_16505 PF03477 ATP cone domain JHS95_16505 PF13597 Anaerobic ribonucleoside-triphosphate reductase JHS95_16515 PF01554 MatE JHS95_16520 PF12833 Helix-turn-helix domain JHS95_16525 PF00155 Aminotransferase class I and II JHS95_16530 PF08443 RimK-like ATP-grasp domain JHS95_16530 PF18030 RimK PreATP-grasp domain JHS95_16540 PF04076 Bacterial OB fold (BOF) protein JHS95_16545 PF07685 CobB/CobQ-like glutamine amidotransferase domain JHS95_16555 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_16560 PF00005 ABC transporter JHS95_16560 PF03459 TOBE domain JHS95_16570 PF00990 Diguanylate cyclase, GGDEF domain JHS95_16570 PF01590 GAF domain JHS95_16570 PF00563 EAL domain JHS95_16570 PF00360 Phytochrome region JHS95_16580 PF00990 Diguanylate cyclase, GGDEF domain JHS95_16595 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JHS95_16595 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JHS95_16595 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch JHS95_16600 PF02233 NAD(P) transhydrogenase beta subunit JHS95_16610 PF00072 Response regulator receiver domain JHS95_16610 PF00486 Transcriptional regulatory protein, C terminal JHS95_16625 PF03701 Uncharacterised protein family (UPF0181) JHS95_16630 PF00582 Universal stress protein family JHS95_16640 PF03466 LysR substrate binding domain JHS95_16640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_16655 PF01253 Translation initiation factor SUI1 JHS95_16665 PF07478 D-ala D-ala ligase C-terminus JHS95_16665 PF01820 D-ala D-ala ligase N-terminus JHS95_16675 PF00583 Acetyltransferase (GNAT) family JHS95_16675 PF13380 CoA binding domain JHS95_16675 PF13607 Succinyl-CoA ligase like flavodoxin domain JHS95_16680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_16680 PF03466 LysR substrate binding domain JHS95_16685 PF07715 TonB-dependent Receptor Plug Domain JHS95_16685 PF00593 TonB dependent receptor JHS95_16690 PF16363 GDP-mannose 4,6 dehydratase JHS95_16695 PF08448 PAS fold JHS95_16695 PF13426 PAS domain JHS95_16695 PF05231 MASE1 JHS95_16695 PF00563 EAL domain JHS95_16695 PF00990 Diguanylate cyclase, GGDEF domain JHS95_16695 PF08447 PAS fold JHS95_16700 PF03746 LamB/YcsF family JHS95_16705 PF02682 Carboxyltransferase domain, subdomain C and D JHS95_16710 PF02626 Carboxyltransferase domain, subdomain A and B JHS95_16715 PF01266 FAD dependent oxidoreductase JHS95_16715 PF05430 S-adenosyl-L-methionine-dependent methyltransferase JHS95_16725 PF00005 ABC transporter JHS95_16730 PF13472 GDSL-like Lipase/Acylhydrolase family JHS95_16735 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase JHS95_16735 PF12241 Trans-2-enoyl-CoA reductase catalytic region JHS95_16735 PF07055 Enoyl reductase FAD binding domain JHS95_16740 PF00563 EAL domain JHS95_16740 PF00990 Diguanylate cyclase, GGDEF domain JHS95_16740 PF03707 Bacterial signalling protein N terminal repeat JHS95_16740 PF13188 PAS domain JHS95_16750 PF01797 Transposase IS200 like JHS95_16755 PF00684 DnaJ central domain JHS95_16755 PF00226 DnaJ domain JHS95_16755 PF01556 DnaJ C terminal domain JHS95_16780 PF12793 Sugar transport-related sRNA regulator N-term JHS95_16780 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JHS95_16790 PF03061 Thioesterase superfamily JHS95_16805 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JHS95_16810 PF12262 Bacterial virulence factor lipase N-terminal JHS95_16825 PF03741 Integral membrane protein TerC family JHS95_16830 PF02872 5'-nucleotidase, C-terminal domain JHS95_16830 PF00149 Calcineurin-like phosphoesterase JHS95_16835 PF11398 Protein of unknown function (DUF2813) JHS95_16840 PF01797 Transposase IS200 like JHS95_16845 PF06496 Protein of unknown function (DUF1097) JHS95_16850 PF03466 LysR substrate binding domain JHS95_16850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_16855 PF01226 Formate/nitrite transporter JHS95_16860 PF04264 YceI-like domain JHS95_16865 PF01292 Prokaryotic cytochrome b561 JHS95_16880 PF12792 CSS motif domain associated with EAL JHS95_16880 PF00563 EAL domain JHS95_16885 PF00271 Helicase conserved C-terminal domain JHS95_16885 PF00270 DEAD/DEAH box helicase JHS95_16890 PF04336 Acyl carrier protein phosphodiesterase JHS95_16895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS95_16900 PF13419 Haloacid dehalogenase-like hydrolase JHS95_16905 PF11849 Domain of unknown function (DUF3369) JHS95_16920 PF00294 pfkB family carbohydrate kinase JHS95_16925 PF01268 Formate--tetrahydrofolate ligase JHS95_16930 PF00483 Nucleotidyl transferase JHS95_16935 PF06483 Chitinase C JHS95_16935 PF00704 Glycosyl hydrolases family 18 JHS95_16940 PF06719 AraC-type transcriptional regulator N-terminus JHS95_16940 PF12833 Helix-turn-helix domain JHS95_16945 PF00465 Iron-containing alcohol dehydrogenase JHS95_16955 PF02954 Bacterial regulatory protein, Fis family JHS95_16955 PF00072 Response regulator receiver domain JHS95_16955 PF14532 Sigma-54 interaction domain JHS95_16960 PF00672 HAMP domain JHS95_16960 PF00512 His Kinase A (phospho-acceptor) domain JHS95_16960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_16970 PF07690 Major Facilitator Superfamily JHS95_16975 PF00224 Pyruvate kinase, barrel domain JHS95_16975 PF02887 Pyruvate kinase, alpha/beta domain JHS95_16980 PF00005 ABC transporter JHS95_16985 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_16990 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS95_16995 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_17000 PF00989 PAS fold JHS95_17000 PF00990 Diguanylate cyclase, GGDEF domain JHS95_17000 PF01590 GAF domain JHS95_17000 PF00563 EAL domain JHS95_17015 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JHS95_17015 PF00356 Bacterial regulatory proteins, lacI family JHS95_17020 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JHS95_17020 PF00381 PTS HPr component phosphorylation site JHS95_17025 PF00294 pfkB family carbohydrate kinase JHS95_17030 PF02378 Phosphotransferase system, EIIC JHS95_17030 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JHS95_17040 PF00873 AcrB/AcrD/AcrF family JHS95_17050 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS95_17060 PF01571 Aminomethyltransferase folate-binding domain JHS95_17060 PF08669 Glycine cleavage T-protein C-terminal barrel domain JHS95_17070 PF00464 Serine hydroxymethyltransferase JHS95_17075 PF01597 Glycine cleavage H-protein JHS95_17080 PF02347 Glycine cleavage system P-protein JHS95_17105 PF01638 HxlR-like helix-turn-helix JHS95_17145 PF01039 Carboxyl transferase domain JHS95_17145 PF17848 Acetyl-coA carboxylase zinc finger domain JHS95_17150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_17150 PF03466 LysR substrate binding domain JHS95_17155 PF11490 DNA polymerase III polC-type N-terminus II JHS95_17155 PF07733 Bacterial DNA polymerase III alpha NTPase domain JHS95_17155 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JHS95_17155 PF00929 Exonuclease JHS95_17155 PF14579 Helix-hairpin-helix motif JHS95_17155 PF02811 PHP domain JHS95_17165 PF00005 ABC transporter JHS95_17165 PF00664 ABC transporter transmembrane region JHS95_17185 PF02253 Phospholipase A1 JHS95_17195 PF00376 MerR family regulatory protein JHS95_17195 PF09278 MerR, DNA binding JHS95_17200 PF01327 Polypeptide deformylase JHS95_17230 PF03448 MgtE intracellular N domain JHS95_17230 PF00571 CBS domain JHS95_17230 PF01769 Divalent cation transporter JHS95_17250 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JHS95_17255 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JHS95_17265 PF01757 Acyltransferase family JHS95_17275 PF09722 Protein of unknown function (DUF2384) JHS95_17280 PF00141 Peroxidase JHS95_17285 PF13187 4Fe-4S dicluster domain JHS95_17285 PF01645 Conserved region in glutamate synthase JHS95_17295 PF00072 Response regulator receiver domain JHS95_17295 PF12431 Transcriptional regulator JHS95_17300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_17300 PF00989 PAS fold JHS95_17300 PF17203 Single cache domain 3 JHS95_17300 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain JHS95_17305 PF00939 Sodium:sulfate symporter transmembrane region JHS95_17310 PF00171 Aldehyde dehydrogenase family JHS95_17330 PF00892 EamA-like transporter family JHS95_17335 PF00893 Small Multidrug Resistance protein JHS95_17350 PF01569 PAP2 superfamily JHS95_17360 PF00892 EamA-like transporter family JHS95_17375 PF01584 CheW-like domain JHS95_17375 PF00072 Response regulator receiver domain JHS95_17395 PF00196 Bacterial regulatory proteins, luxR family JHS95_17395 PF00072 Response regulator receiver domain JHS95_17405 PF00990 Diguanylate cyclase, GGDEF domain JHS95_17410 PF00072 Response regulator receiver domain JHS95_17410 PF00196 Bacterial regulatory proteins, luxR family JHS95_17415 PF03707 Bacterial signalling protein N terminal repeat JHS95_17415 PF00990 Diguanylate cyclase, GGDEF domain JHS95_17415 PF00563 EAL domain JHS95_17415 PF13188 PAS domain JHS95_17420 PF00072 Response regulator receiver domain JHS95_17420 PF09456 RcsC Alpha-Beta-Loop (ABL) JHS95_17420 PF00512 His Kinase A (phospho-acceptor) domain JHS95_17420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_17430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_17430 PF03466 LysR substrate binding domain JHS95_17435 PF03466 LysR substrate binding domain JHS95_17435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_17445 PF00691 OmpA family JHS95_17445 PF05736 OprF membrane domain JHS95_17480 PF00437 Type II/IV secretion system protein JHS95_17495 PF04972 BON domain JHS95_17495 PF00263 Bacterial type II and III secretion system protein JHS95_17495 PF13629 Pilus formation protein N terminal region JHS95_17515 PF03466 LysR substrate binding domain JHS95_17515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_17520 PF12833 Helix-turn-helix domain JHS95_17530 PF04151 Bacterial pre-peptidase C-terminal domain JHS95_17530 PF08453 Peptidase family M9 N-terminal JHS95_17530 PF01752 Collagenase JHS95_17535 PF13737 Transposase DDE domain JHS95_17545 PF01926 50S ribosome-binding GTPase JHS95_17550 PF00155 Aminotransferase class I and II JHS95_17555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_17555 PF00072 Response regulator receiver domain JHS95_17575 PF03606 C4-dicarboxylate anaerobic carrier JHS95_17580 PF04011 LemA family JHS95_17585 PF01435 Peptidase family M48 JHS95_17600 PF18081 Fanconi anemia-associated nuclease SAP domain JHS95_17600 PF08774 VRR-NUC domain JHS95_17610 PF13186 Iron-sulfur cluster-binding domain JHS95_17610 PF04055 Radical SAM superfamily JHS95_17630 PF00781 Diacylglycerol kinase catalytic domain JHS95_17635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_17635 PF03466 LysR substrate binding domain JHS95_17640 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JHS95_17670 PF07726 ATPase family associated with various cellular activities (AAA) JHS95_17670 PF17863 AAA lid domain JHS95_17675 PF04055 Radical SAM superfamily JHS95_17675 PF13186 Iron-sulfur cluster-binding domain JHS95_17680 PF00884 Sulfatase JHS95_17685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_17685 PF03466 LysR substrate binding domain JHS95_17695 PF00884 Sulfatase JHS95_17700 PF16385 Domain of unknown function JHS95_17700 PF00884 Sulfatase JHS95_17705 PF00072 Response regulator receiver domain JHS95_17705 PF00486 Transcriptional regulatory protein, C terminal JHS95_17720 PF00072 Response regulator receiver domain JHS95_17720 PF00512 His Kinase A (phospho-acceptor) domain JHS95_17720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_17720 PF01627 Hpt domain JHS95_17720 PF00672 HAMP domain JHS95_17725 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JHS95_17730 PF02142 MGS-like domain JHS95_17735 PF00580 UvrD/REP helicase N-terminal domain JHS95_17735 PF13361 UvrD-like helicase C-terminal domain JHS95_17735 PF12462 DNA helicase IV / RNA helicase N terminal JHS95_17740 PF12805 FUSC-like inner membrane protein yccS JHS95_17770 PF00593 TonB dependent receptor JHS95_17770 PF07715 TonB-dependent Receptor Plug Domain JHS95_17775 PF12833 Helix-turn-helix domain JHS95_17780 PF13411 MerR HTH family regulatory protein JHS95_17785 PF00005 ABC transporter JHS95_17790 PF01032 FecCD transport family JHS95_17795 PF01032 FecCD transport family JHS95_17800 PF01497 Periplasmic binding protein JHS95_17820 PF04314 Copper chaperone PCu(A)C JHS95_17825 PF00012 Hsp70 protein JHS95_17840 PF00676 Dehydrogenase E1 component JHS95_17845 PF02780 Transketolase, C-terminal domain JHS95_17845 PF02779 Transketolase, pyrimidine binding domain JHS95_17850 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JHS95_17850 PF02817 e3 binding domain JHS95_17850 PF00364 Biotin-requiring enzyme JHS95_17860 PF00043 Glutathione S-transferase, C-terminal domain JHS95_17860 PF02798 Glutathione S-transferase, N-terminal domain JHS95_17865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_17865 PF03466 LysR substrate binding domain JHS95_17875 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_17880 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_17885 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS95_17890 PF00005 ABC transporter JHS95_17895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_17895 PF03466 LysR substrate binding domain JHS95_17910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_17910 PF03466 LysR substrate binding domain JHS95_17915 PF01565 FAD binding domain JHS95_17915 PF08031 Berberine and berberine like JHS95_17920 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JHS95_17935 PF01040 UbiA prenyltransferase family JHS95_17945 PF00510 Cytochrome c oxidase subunit III JHS95_17950 PF00115 Cytochrome C and Quinol oxidase polypeptide I JHS95_17955 PF06481 COX Aromatic Rich Motif JHS95_17955 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JHS95_17965 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JHS95_17965 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JHS95_17970 PF00378 Enoyl-CoA hydratase/isomerase JHS95_17975 PF00378 Enoyl-CoA hydratase/isomerase JHS95_17980 PF02770 Acyl-CoA dehydrogenase, middle domain JHS95_17980 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JHS95_17980 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JHS95_17985 PF00171 Aldehyde dehydrogenase family JHS95_17990 PF02803 Thiolase, C-terminal domain JHS95_17990 PF00108 Thiolase, N-terminal domain JHS95_17995 PF09278 MerR, DNA binding JHS95_17995 PF00376 MerR family regulatory protein JHS95_18000 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JHS95_18000 PF02770 Acyl-CoA dehydrogenase, middle domain JHS95_18000 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JHS95_18005 PF01039 Carboxyl transferase domain JHS95_18010 PF00378 Enoyl-CoA hydratase/isomerase JHS95_18015 PF00682 HMGL-like JHS95_18020 PF10063 Uncharacterized integral membrane protein (DUF2301) JHS95_18030 PF13426 PAS domain JHS95_18030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS95_18030 PF08447 PAS fold JHS95_18035 PF00871 Acetokinase family JHS95_18040 PF13426 PAS domain JHS95_18040 PF00563 EAL domain JHS95_18040 PF00990 Diguanylate cyclase, GGDEF domain JHS95_18045 PF00270 DEAD/DEAH box helicase JHS95_18045 PF00271 Helicase conserved C-terminal domain JHS95_18045 PF03880 DbpA RNA binding domain JHS95_18050 PF08206 Ribonuclease B OB domain JHS95_18050 PF00773 RNB domain JHS95_18050 PF00575 S1 RNA binding domain JHS95_18055 PF12833 Helix-turn-helix domain JHS95_18065 PF12849 PBP superfamily domain JHS95_18070 PF01575 MaoC like domain JHS95_18080 PF14659 Phage integrase, N-terminal SAM-like domain JHS95_18080 PF00589 Phage integrase family JHS95_18100 PF14659 Phage integrase, N-terminal SAM-like domain JHS95_18100 PF00589 Phage integrase family JHS95_18135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_18135 PF03466 LysR substrate binding domain JHS95_18140 PF04055 Radical SAM superfamily JHS95_18140 PF13186 Iron-sulfur cluster-binding domain JHS95_18145 PF00884 Sulfatase JHS95_18150 PF03466 LysR substrate binding domain JHS95_18150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_18160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS95_18160 PF00672 HAMP domain JHS95_18160 PF12729 Four helix bundle sensory module for signal transduction JHS95_18165 PF00005 ABC transporter JHS95_18170 PF00563 EAL domain JHS95_18170 PF12792 CSS motif domain associated with EAL JHS95_18190 PF00270 DEAD/DEAH box helicase JHS95_18190 PF00271 Helicase conserved C-terminal domain JHS95_18195 PF02492 CobW/HypB/UreG, nucleotide-binding domain JHS95_18195 PF07683 Cobalamin synthesis protein cobW C-terminal domain JHS95_18205 PF01470 Pyroglutamyl peptidase JHS95_18215 PF00291 Pyridoxal-phosphate dependent enzyme JHS95_18220 PF09905 DNA-binding protein VF530 JHS95_18225 PF00270 DEAD/DEAH box helicase JHS95_18225 PF00271 Helicase conserved C-terminal domain JHS95_18230 PF12843 Putative quorum-sensing-regulated virulence factor JHS95_18250 PF01329 Pterin 4 alpha carbinolamine dehydratase JHS95_18255 PF00351 Biopterin-dependent aromatic amino acid hydroxylase JHS95_18260 PF00501 AMP-binding enzyme JHS95_18260 PF13193 AMP-binding enzyme C-terminal domain JHS95_18270 PF03466 LysR substrate binding domain JHS95_18270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_18295 PF00892 EamA-like transporter family JHS95_18310 PF00465 Iron-containing alcohol dehydrogenase JHS95_18315 PF07995 Glucose / Sorbosone dehydrogenase JHS95_18325 PF00210 Ferritin-like domain JHS95_18330 PF00672 HAMP domain JHS95_18330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS95_18330 PF17200 Single Cache domain 2 JHS95_18340 PF00005 ABC transporter JHS95_18340 PF12704 MacB-like periplasmic core domain JHS95_18340 PF02687 FtsX-like permease family JHS95_18345 PF12704 MacB-like periplasmic core domain JHS95_18345 PF02687 FtsX-like permease family JHS95_18345 PF00005 ABC transporter JHS95_18360 PF00990 Diguanylate cyclase, GGDEF domain JHS95_18365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS95_18365 PF13426 PAS domain JHS95_18365 PF08447 PAS fold JHS95_18370 PF03889 Alternative ribosome-rescue factor A JHS95_18375 PF00313 'Cold-shock' DNA-binding domain JHS95_18405 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JHS95_18405 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JHS95_18410 PF01040 UbiA prenyltransferase family JHS95_18415 PF02628 Cytochrome oxidase assembly protein JHS95_18435 PF00510 Cytochrome c oxidase subunit III JHS95_18440 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 JHS95_18445 PF00115 Cytochrome C and Quinol oxidase polypeptide I JHS95_18450 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JHS95_18450 PF02790 Cytochrome C oxidase subunit II, transmembrane domain JHS95_18455 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JHS95_18455 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JHS95_18455 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JHS95_18455 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JHS95_18465 PF01810 LysE type translocator JHS95_18470 PF12833 Helix-turn-helix domain JHS95_18485 PF01557 Fumarylacetoacetate (FAA) hydrolase family JHS95_18495 PF00267 Gram-negative porin JHS95_18500 PF00892 EamA-like transporter family JHS95_18505 PF00462 Glutaredoxin JHS95_18515 PF07690 Major Facilitator Superfamily JHS95_18520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_18520 PF03466 LysR substrate binding domain JHS95_18525 PF08447 PAS fold JHS95_18525 PF00990 Diguanylate cyclase, GGDEF domain JHS95_18525 PF00563 EAL domain JHS95_18525 PF08448 PAS fold JHS95_18530 PF08525 Opacity-associated protein A N-terminal motif JHS95_18530 PF01551 Peptidase family M23 JHS95_18530 PF01476 LysM domain JHS95_18550 PF07670 Nucleoside recognition JHS95_18555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS95_18555 PF00672 HAMP domain JHS95_18555 PF02743 Cache domain JHS95_18565 PF03222 Tryptophan/tyrosine permease family JHS95_18600 PF00107 Zinc-binding dehydrogenase JHS95_18600 PF08240 Alcohol dehydrogenase GroES-like domain JHS95_18605 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JHS95_18605 PF02378 Phosphotransferase system, EIIC JHS95_18610 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JHS95_18625 PF01758 Sodium Bile acid symporter family JHS95_18635 PF01161 Phosphatidylethanolamine-binding protein JHS95_18640 PF02567 Phenazine biosynthesis-like protein JHS95_18645 PF10282 Lactonase, 7-bladed beta-propeller JHS95_18650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS95_18650 PF17200 Single Cache domain 2 JHS95_18650 PF00672 HAMP domain JHS95_18660 PF00005 ABC transporter JHS95_18680 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JHS95_18680 PF01568 Molydopterin dinucleotide binding domain JHS95_18680 PF00384 Molybdopterin oxidoreductase JHS95_18680 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JHS95_18680 PF12838 4Fe-4S dicluster domain JHS95_18700 PF00873 AcrB/AcrD/AcrF family JHS95_18720 PF00990 Diguanylate cyclase, GGDEF domain JHS95_18730 PF13302 Acetyltransferase (GNAT) domain JHS95_18740 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JHS95_18745 PF00873 AcrB/AcrD/AcrF family JHS95_18750 PF13533 Biotin-lipoyl like JHS95_18760 PF00326 Prolyl oligopeptidase family JHS95_18760 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JHS95_18765 PF00005 ABC transporter JHS95_18765 PF12848 ABC transporter JHS95_18765 PF16326 ABC transporter C-terminal domain JHS95_18770 PF00582 Universal stress protein family JHS95_18775 PF02525 Flavodoxin-like fold JHS95_18780 PF00999 Sodium/hydrogen exchanger family JHS95_18780 PF02254 TrkA-N domain JHS95_18795 PF00128 Alpha amylase, catalytic domain JHS95_18805 PF01752 Collagenase JHS95_18805 PF04151 Bacterial pre-peptidase C-terminal domain JHS95_18805 PF08453 Peptidase family M9 N-terminal JHS95_18825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_18825 PF03466 LysR substrate binding domain JHS95_18830 PF00210 Ferritin-like domain JHS95_18835 PF00141 Peroxidase JHS95_18855 PF00082 Subtilase family JHS95_18875 PF00682 HMGL-like JHS95_18875 PF08502 LeuA allosteric (dimerisation) domain JHS95_18885 PF07690 Major Facilitator Superfamily JHS95_18890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_18890 PF03466 LysR substrate binding domain JHS95_18905 PF00072 Response regulator receiver domain JHS95_18905 PF01584 CheW-like domain JHS95_18915 PF01243 Pyridoxamine 5'-phosphate oxidase JHS95_18920 PF06228 Haem utilisation ChuX/HutX JHS95_18925 PF04055 Radical SAM superfamily JHS95_18930 PF03544 Gram-negative bacterial TonB protein C-terminal JHS95_18935 PF01618 MotA/TolQ/ExbB proton channel family JHS95_18940 PF02472 Biopolymer transport protein ExbD/TolR JHS95_18950 PF01032 FecCD transport family JHS95_18955 PF00005 ABC transporter JHS95_18995 PF01467 Cytidylyltransferase-like JHS95_19000 PF02540 NAD synthase JHS95_19005 PF03473 MOSC domain JHS95_19005 PF00111 2Fe-2S iron-sulfur cluster binding domain JHS95_19005 PF03473 MOSC domain JHS95_19005 PF03476 MOSC N-terminal beta barrel domain JHS95_19005 PF03476 MOSC N-terminal beta barrel domain JHS95_19005 PF00111 2Fe-2S iron-sulfur cluster binding domain JHS95_19010 PF01679 Proteolipid membrane potential modulator JHS95_19015 PF01979 Amidohydrolase family JHS95_19020 PF05661 Protein of unknown function (DUF808) JHS95_19050 PF12833 Helix-turn-helix domain JHS95_19050 PF01497 Periplasmic binding protein JHS95_19055 PF00155 Aminotransferase class I and II JHS95_19080 PF00535 Glycosyl transferase family 2 JHS95_19095 PF00270 DEAD/DEAH box helicase JHS95_19095 PF00271 Helicase conserved C-terminal domain JHS95_19105 PF03466 LysR substrate binding domain JHS95_19105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_19110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_19110 PF03466 LysR substrate binding domain JHS95_19120 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JHS95_19125 PF08240 Alcohol dehydrogenase GroES-like domain JHS95_19125 PF00107 Zinc-binding dehydrogenase JHS95_19140 PF12833 Helix-turn-helix domain JHS95_19140 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JHS95_19145 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) JHS95_19160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_19160 PF03466 LysR substrate binding domain JHS95_19165 PF00709 Adenylosuccinate synthetase JHS95_19170 PF00710 Asparaginase, N-terminal JHS95_19170 PF17763 Glutaminase/Asparaginase C-terminal domain JHS95_19175 PF03618 Kinase/pyrophosphorylase JHS95_19180 PF00391 PEP-utilising enzyme, mobile domain JHS95_19180 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JHS95_19180 PF02896 PEP-utilising enzyme, TIM barrel domain JHS95_19195 PF00579 tRNA synthetases class I (W and Y) JHS95_19200 PF13416 Bacterial extracellular solute-binding protein JHS95_19210 PF03466 LysR substrate binding domain JHS95_19210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_19215 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS95_19220 PF00873 AcrB/AcrD/AcrF family JHS95_19235 PF00990 Diguanylate cyclase, GGDEF domain JHS95_19235 PF07694 5TMR of 5TMR-LYT JHS95_19245 PF00196 Bacterial regulatory proteins, luxR family JHS95_19250 PF00703 Glycosyl hydrolases family 2 JHS95_19250 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JHS95_19250 PF02837 Glycosyl hydrolases family 2, sugar binding domain JHS95_19250 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 JHS95_19255 PF02028 BCCT, betaine/carnitine/choline family transporter JHS95_19260 PF00392 Bacterial regulatory proteins, gntR family JHS95_19260 PF07702 UTRA domain JHS95_19285 PF00005 ABC transporter JHS95_19285 PF08402 TOBE domain JHS95_19310 PF00873 AcrB/AcrD/AcrF family JHS95_19315 PF13533 Biotin-lipoyl like JHS95_19320 PF13091 PLD-like domain JHS95_19345 PF00376 MerR family regulatory protein JHS95_19345 PF09278 MerR, DNA binding JHS95_19355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_19355 PF03466 LysR substrate binding domain JHS95_19365 PF13378 Enolase C-terminal domain-like JHS95_19365 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JHS95_19370 PF03144 Elongation factor Tu domain 2 JHS95_19370 PF00009 Elongation factor Tu GTP binding domain JHS95_19370 PF03764 Elongation factor G, domain IV JHS95_19370 PF14492 Elongation Factor G, domain II JHS95_19370 PF00679 Elongation factor G C-terminus JHS95_19375 PF01797 Transposase IS200 like JHS95_19400 PF02001 Protein of unknown function DUF134 JHS95_19405 PF04170 NlpE N-terminal domain JHS95_19405 PF17185 NlpE C-terminal OB domain JHS95_19410 PF06629 MltA-interacting protein MipA JHS95_19420 PF01389 OmpA-like transmembrane domain JHS95_19420 PF00691 OmpA family JHS95_19425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_19425 PF03466 LysR substrate binding domain JHS95_19435 PF01797 Transposase IS200 like JHS95_19455 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family JHS95_19455 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain JHS95_19465 PF00857 Isochorismatase family JHS95_19475 PF00199 Catalase JHS95_19475 PF06628 Catalase-related immune-responsive JHS95_19485 PF00455 DeoR C terminal sensor domain JHS95_19485 PF08220 DeoR-like helix-turn-helix domain JHS95_19490 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JHS95_19495 PF01641 SelR domain JHS95_19495 PF01625 Peptide methionine sulfoxide reductase JHS95_19505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_19505 PF03466 LysR substrate binding domain JHS95_19520 PF03060 Nitronate monooxygenase JHS95_19525 PF02872 5'-nucleotidase, C-terminal domain JHS95_19525 PF00149 Calcineurin-like phosphoesterase JHS95_19535 PF08359 YsiA-like protein, C-terminal region JHS95_19535 PF00440 Bacterial regulatory proteins, tetR family JHS95_19550 PF03466 LysR substrate binding domain JHS95_19550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_19555 PF01810 LysE type translocator JHS95_19570 PF00118 TCP-1/cpn60 chaperonin family JHS95_19575 PF00166 Chaperonin 10 Kd subunit JHS95_19580 PF00581 Rhodanese-like domain JHS95_19605 PF01070 FMN-dependent dehydrogenase JHS95_19625 PF00669 Bacterial flagellin N-terminal helical region JHS95_19630 PF00460 Flagella basal body rod protein JHS95_19630 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JHS95_19635 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JHS95_19635 PF10135 Rod binding protein JHS95_19640 PF02119 Flagellar P-ring protein JHS95_19645 PF02107 Flagellar L-ring protein JHS95_19650 PF00460 Flagella basal body rod protein JHS95_19650 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JHS95_19655 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JHS95_19655 PF00460 Flagella basal body rod protein JHS95_19660 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JHS95_19660 PF00460 Flagella basal body rod protein JHS95_19660 PF07559 Flagellar basal body protein FlaE JHS95_19665 PF13860 FlgD Ig-like domain JHS95_19665 PF03963 Flagellar hook capping protein - N-terminal region JHS95_19665 PF13861 FlgD Tudor-like domain JHS95_19670 PF00460 Flagella basal body rod protein JHS95_19670 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JHS95_19675 PF00460 Flagella basal body rod protein JHS95_19695 PF01464 Transglycosylase SLT domain JHS95_19700 PF08264 Anticodon-binding domain of tRNA JHS95_19700 PF00133 tRNA synthetases class I (I, L, M and V) JHS95_19720 PF03313 Serine dehydratase alpha chain JHS95_19720 PF03315 Serine dehydratase beta chain JHS95_19725 PF00854 POT family JHS95_19735 PF03466 LysR substrate binding domain JHS95_19735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_19745 PF03466 LysR substrate binding domain JHS95_19745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_19750 PF01389 OmpA-like transmembrane domain JHS95_19750 PF00691 OmpA family JHS95_19755 PF18027 Cytosolic carboxypeptidase N-terminal domain JHS95_19755 PF00246 Zinc carboxypeptidase JHS95_19770 PF04393 Protein of unknown function (DUF535) JHS95_19785 PF00392 Bacterial regulatory proteins, gntR family JHS95_19785 PF07702 UTRA domain JHS95_19790 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_19795 PF00005 ABC transporter JHS95_19810 PF00266 Aminotransferase class-V JHS95_19815 PF00202 Aminotransferase class-III JHS95_19820 PF13419 Haloacid dehalogenase-like hydrolase JHS95_19825 PF00356 Bacterial regulatory proteins, lacI family JHS95_19830 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JHS95_19840 PF03611 PTS system sugar-specific permease component JHS95_19850 PF00082 Subtilase family JHS95_19850 PF05922 Peptidase inhibitor I9 JHS95_19855 PF00657 GDSL-like Lipase/Acylhydrolase JHS95_19860 PF02321 Outer membrane efflux protein JHS95_19865 PF12704 MacB-like periplasmic core domain JHS95_19865 PF02687 FtsX-like permease family JHS95_19865 PF00005 ABC transporter JHS95_19870 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS95_19875 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JHS95_19880 PF00194 Eukaryotic-type carbonic anhydrase JHS95_19885 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) JHS95_19900 PF13419 Haloacid dehalogenase-like hydrolase JHS95_19905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_19905 PF03466 LysR substrate binding domain JHS95_19940 PF14602 Hexapeptide repeat of succinyl-transferase JHS95_19940 PF12464 Maltose acetyltransferase JHS95_19945 PF02566 OsmC-like protein JHS95_19990 PF00817 impB/mucB/samB family JHS95_19990 PF13438 Domain of unknown function (DUF4113) JHS95_19990 PF11799 impB/mucB/samB family C-terminal domain JHS95_19995 PF00717 Peptidase S24-like JHS95_20005 PF01555 DNA methylase JHS95_20005 PF18273 Type III R-M EcoP15I C-terminal domain JHS95_20010 PF04851 Type III restriction enzyme, res subunit JHS95_20010 PF08774 VRR-NUC domain JHS95_20030 PF02954 Bacterial regulatory protein, Fis family JHS95_20095 PF08401 Domain of unknown function (DUF1738) JHS95_20095 PF13362 Toprim domain JHS95_20095 PF18818 Metallopeptidase superfamily domain JHS95_20125 PF02566 OsmC-like protein JHS95_20130 PF01641 SelR domain JHS95_20130 PF01625 Peptide methionine sulfoxide reductase JHS95_20145 PF04244 Deoxyribodipyrimidine photo-lyase-related protein JHS95_20150 PF03441 FAD binding domain of DNA photolyase JHS95_20150 PF00875 DNA photolyase JHS95_20155 PF00990 Diguanylate cyclase, GGDEF domain JHS95_20170 PF12729 Four helix bundle sensory module for signal transduction JHS95_20170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS95_20170 PF00672 HAMP domain JHS95_20175 PF05230 MASE2 domain JHS95_20175 PF00990 Diguanylate cyclase, GGDEF domain JHS95_20180 PF13532 2OG-Fe(II) oxygenase superfamily JHS95_20190 PF07670 Nucleoside recognition JHS95_20190 PF01773 Na+ dependent nucleoside transporter N-terminus JHS95_20190 PF07662 Na+ dependent nucleoside transporter C-terminus JHS95_20205 PF01212 Beta-eliminating lyase JHS95_20215 PF01266 FAD dependent oxidoreductase JHS95_20230 PF05525 Branched-chain amino acid transport protein JHS95_20235 PF08448 PAS fold JHS95_20235 PF00990 Diguanylate cyclase, GGDEF domain JHS95_20240 PF00158 Sigma-54 interaction domain JHS95_20240 PF02954 Bacterial regulatory protein, Fis family JHS95_20240 PF00072 Response regulator receiver domain JHS95_20245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_20245 PF00512 His Kinase A (phospho-acceptor) domain JHS95_20245 PF02743 Cache domain JHS95_20250 PF00232 Glycosyl hydrolase family 1 JHS95_20275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_20275 PF03466 LysR substrate binding domain JHS95_20280 PF18030 RimK PreATP-grasp domain JHS95_20280 PF08443 RimK-like ATP-grasp domain JHS95_20285 PF08443 RimK-like ATP-grasp domain JHS95_20285 PF18030 RimK PreATP-grasp domain JHS95_20290 PF00753 Metallo-beta-lactamase superfamily JHS95_20295 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JHS95_20295 PF17944 Arginine decarboxylase C-terminal helical extension JHS95_20295 PF17810 Arginine decarboxylase helical bundle domain JHS95_20300 PF00491 Arginase family JHS95_20305 PF07690 Major Facilitator Superfamily JHS95_20310 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JHS95_20310 PF00326 Prolyl oligopeptidase family JHS95_20325 PF00950 ABC 3 transport family JHS95_20330 PF00005 ABC transporter JHS95_20335 PF01297 Zinc-uptake complex component A periplasmic JHS95_20380 PF02472 Biopolymer transport protein ExbD/TolR JHS95_20385 PF01618 MotA/TolQ/ExbB proton channel family JHS95_20390 PF01618 MotA/TolQ/ExbB proton channel family JHS95_20400 PF00593 TonB dependent receptor JHS95_20400 PF07715 TonB-dependent Receptor Plug Domain JHS95_20405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_20405 PF00672 HAMP domain JHS95_20405 PF16750 Sensor domain of 2-component histidine kinase JHS95_20405 PF00512 His Kinase A (phospho-acceptor) domain JHS95_20410 PF00072 Response regulator receiver domain JHS95_20410 PF00486 Transcriptional regulatory protein, C terminal JHS95_20415 PF00056 lactate/malate dehydrogenase, NAD binding domain JHS95_20415 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JHS95_20420 PF03009 Glycerophosphoryl diester phosphodiesterase family JHS95_20430 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JHS95_20430 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JHS95_20435 PF10928 Protein of unknown function (DUF2810) JHS95_20485 PF04013 Putative SAM-dependent RNA methyltransferase JHS95_20490 PF01523 Putative modulator of DNA gyrase JHS95_20495 PF01523 Putative modulator of DNA gyrase JHS95_20500 PF08543 Phosphomethylpyrimidine kinase JHS95_20505 PF00005 ABC transporter JHS95_20510 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_20515 PF09084 NMT1/THI5 like JHS95_20520 PF03070 TENA/THI-4/PQQC family JHS95_20525 PF02110 Hydroxyethylthiazole kinase family JHS95_20530 PF02581 Thiamine monophosphate synthase JHS95_20540 PF01797 Transposase IS200 like JHS95_20545 PF00384 Molybdopterin oxidoreductase JHS95_20545 PF18364 Molybdopterin oxidoreductase N-terminal domain JHS95_20545 PF01568 Molydopterin dinucleotide binding domain JHS95_20550 PF03264 NapC/NirT cytochrome c family, N-terminal region JHS95_20575 PF00583 Acetyltransferase (GNAT) family JHS95_20595 PF00392 Bacterial regulatory proteins, gntR family JHS95_20595 PF00155 Aminotransferase class I and II JHS95_20600 PF02595 Glycerate kinase family JHS95_20605 PF02447 GntP family permease JHS95_20610 PF05651 Putative sugar diacid recognition JHS95_20610 PF17853 GGDEF-like domain JHS95_20610 PF13556 PucR C-terminal helix-turn-helix domain JHS95_20635 PF13419 Haloacid dehalogenase-like hydrolase JHS95_20650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_20650 PF03466 LysR substrate binding domain JHS95_20660 PF03466 LysR substrate binding domain JHS95_20660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_20665 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JHS95_20670 PF01661 Macro domain JHS95_20675 PF01204 Trehalase JHS95_20685 PF12706 Beta-lactamase superfamily domain JHS95_20695 PF07690 Major Facilitator Superfamily JHS95_20700 PF13533 Biotin-lipoyl like JHS95_20705 PF03922 OmpW family JHS95_20710 PF13599 Pentapeptide repeats (9 copies) JHS95_20725 PF18416 N-acetylglucosamine binding protein domain 2 JHS95_20725 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading JHS95_20730 PF01037 Lrp/AsnC ligand binding domain JHS95_20735 PF01810 LysE type translocator JHS95_20740 PF08021 Siderophore-interacting FAD-binding domain JHS95_20740 PF04954 Siderophore-interacting protein JHS95_20745 PF14583 Oligogalacturonate lyase JHS95_20750 PF00474 Sodium:solute symporter family JHS95_20755 PF13229 Right handed beta helix region JHS95_20770 PF01081 KDPG and KHG aldolase JHS95_20775 PF00294 pfkB family carbohydrate kinase JHS95_20790 PF07883 Cupin domain JHS95_20795 PF10688 Bacterial inner membrane protein JHS95_20805 PF01614 Bacterial transcriptional regulator JHS95_20805 PF09339 IclR helix-turn-helix domain JHS95_20820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_20820 PF03466 LysR substrate binding domain JHS95_20825 PF00797 N-acetyltransferase JHS95_20830 PF00107 Zinc-binding dehydrogenase JHS95_20830 PF08240 Alcohol dehydrogenase GroES-like domain JHS95_20835 PF00756 Putative esterase JHS95_20845 PF00990 Diguanylate cyclase, GGDEF domain JHS95_20845 PF17152 Periplasmic sensor domain JHS95_20860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_20860 PF03466 LysR substrate binding domain JHS95_20875 PF00849 RNA pseudouridylate synthase JHS95_20880 PF01554 MatE JHS95_20885 PF00563 EAL domain JHS95_20885 PF00990 Diguanylate cyclase, GGDEF domain JHS95_20895 PF06865 Pyrimidine/purine nucleoside phosphorylase JHS95_20905 PF08329 Chitinase A, N-terminal domain JHS95_20905 PF00704 Glycosyl hydrolases family 18 JHS95_20925 PF03600 Citrate transporter JHS95_20935 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JHS95_20945 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JHS95_20945 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JHS95_20950 PF00730 HhH-GPD superfamily base excision DNA repair protein JHS95_20950 PF06029 AlkA N-terminal domain JHS95_20960 PF07681 DoxX JHS95_20965 PF02678 Pirin JHS95_20965 PF17954 Quercetinase C-terminal cupin domain JHS95_20970 PF03466 LysR substrate binding domain JHS95_20970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_20985 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JHS95_20995 PF03616 Sodium/glutamate symporter JHS95_21000 PF00392 Bacterial regulatory proteins, gntR family JHS95_21000 PF00155 Aminotransferase class I and II JHS95_21005 PF00005 ABC transporter JHS95_21015 PF03616 Sodium/glutamate symporter JHS95_21020 PF00132 Bacterial transferase hexapeptide (six repeats) JHS95_21035 PF00672 HAMP domain JHS95_21035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS95_21035 PF17200 Single Cache domain 2 JHS95_21040 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JHS95_21050 PF04397 LytTr DNA-binding domain JHS95_21050 PF00072 Response regulator receiver domain JHS95_21055 PF07694 5TMR of 5TMR-LYT JHS95_21055 PF13492 GAF domain JHS95_21055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_21055 PF06580 Histidine kinase JHS95_21075 PF00005 ABC transporter JHS95_21085 PF01098 Cell cycle protein JHS95_21090 PF01709 Transcriptional regulator JHS95_21100 PF00072 Response regulator receiver domain JHS95_21100 PF17149 Periplasmic sensor domain found in signal transduction proteins JHS95_21100 PF00672 HAMP domain JHS95_21100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_21100 PF00512 His Kinase A (phospho-acceptor) domain JHS95_21100 PF01627 Hpt domain JHS95_21110 PF08719 Domain of unknown function (DUF1768) JHS95_21110 PF00925 GTP cyclohydrolase II JHS95_21115 PF01797 Transposase IS200 like JHS95_21125 PF00005 ABC transporter JHS95_21125 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS95_21130 PF00005 ABC transporter JHS95_21130 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS95_21145 PF13614 AAA domain JHS95_21145 PF18607 ParA helix turn helix domain JHS95_21150 PF08775 ParB family JHS95_21150 PF02195 ParB-like nuclease domain JHS95_21155 PF13718 GNAT acetyltransferase 2 JHS95_21155 PF05127 Helicase JHS95_21165 PF00132 Bacterial transferase hexapeptide (six repeats) JHS95_21170 PF03466 LysR substrate binding domain JHS95_21170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_21175 PF03575 Peptidase family S51 JHS95_21180 PF00267 Gram-negative porin JHS95_21185 PF00367 phosphotransferase system, EIIB JHS95_21185 PF02378 Phosphotransferase system, EIIC JHS95_21190 PF01380 SIS domain JHS95_21195 PF01418 Helix-turn-helix domain, rpiR family JHS95_21195 PF01380 SIS domain JHS95_21200 PF00246 Zinc carboxypeptidase JHS95_21205 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JHS95_21210 PF03358 NADPH-dependent FMN reductase JHS95_21220 PF00005 ABC transporter JHS95_21220 PF03412 Peptidase C39 family JHS95_21220 PF00664 ABC transporter transmembrane region JHS95_21235 PF00529 HlyD membrane-fusion protein of T1SS JHS95_21240 PF02954 Bacterial regulatory protein, Fis family JHS95_21240 PF00072 Response regulator receiver domain JHS95_21240 PF00158 Sigma-54 interaction domain JHS95_21245 PF00512 His Kinase A (phospho-acceptor) domain JHS95_21245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_21245 PF02743 Cache domain JHS95_21250 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region JHS95_21250 PF01243 Pyridoxamine 5'-phosphate oxidase JHS95_21260 PF12833 Helix-turn-helix domain JHS95_21265 PF14850 DNA-binding domain of Proline dehydrogenase JHS95_21265 PF00171 Aldehyde dehydrogenase family JHS95_21265 PF18327 Proline utilization A proline dehydrogenase N-terminal domain JHS95_21265 PF01619 Proline dehydrogenase JHS95_21275 PF00474 Sodium:solute symporter family JHS95_21310 PF01037 Lrp/AsnC ligand binding domain JHS95_21320 PF00005 ABC transporter JHS95_21320 PF00664 ABC transporter transmembrane region JHS95_21345 PF00270 DEAD/DEAH box helicase JHS95_21345 PF00271 Helicase conserved C-terminal domain JHS95_21350 PF03475 3-alpha domain JHS95_21350 PF03473 MOSC domain JHS95_21365 PF02056 Family 4 glycosyl hydrolase JHS95_21365 PF11975 Family 4 glycosyl hydrolase C-terminal domain JHS95_21370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_21370 PF03466 LysR substrate binding domain JHS95_21375 PF02743 Cache domain JHS95_21375 PF00672 HAMP domain JHS95_21375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS95_21385 PF04542 Sigma-70 region 2 JHS95_21385 PF08281 Sigma-70, region 4 JHS95_21390 PF12833 Helix-turn-helix domain JHS95_21390 PF01965 DJ-1/PfpI family JHS95_21395 PF03466 LysR substrate binding domain JHS95_21395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_21420 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS95_21420 PF13192 Thioredoxin domain JHS95_21425 PF00578 AhpC/TSA family JHS95_21425 PF10417 C-terminal domain of 1-Cys peroxiredoxin JHS95_21430 PF01047 MarR family JHS95_21435 PF02566 OsmC-like protein JHS95_21450 PF02311 AraC-like ligand binding domain JHS95_21450 PF12833 Helix-turn-helix domain JHS95_21460 PF11762 L-arabinose isomerase C-terminal domain JHS95_21460 PF02610 L-arabinose isomerase JHS95_21465 PF00596 Class II Aldolase and Adducin N-terminal domain JHS95_21470 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JHS95_21470 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JHS95_21475 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JHS95_21480 PF00005 ABC transporter JHS95_21485 PF02653 Branched-chain amino acid transport system / permease component JHS95_21490 PF01136 Peptidase family U32 JHS95_21500 PF00367 phosphotransferase system, EIIB JHS95_21500 PF02378 Phosphotransferase system, EIIC JHS95_21505 PF00072 Response regulator receiver domain JHS95_21505 PF00486 Transcriptional regulatory protein, C terminal JHS95_21510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_21510 PF00512 His Kinase A (phospho-acceptor) domain JHS95_21510 PF08521 Two-component sensor kinase N-terminal JHS95_21515 PF01547 Bacterial extracellular solute-binding protein JHS95_21520 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JHS95_21520 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JHS95_21525 PF06276 Ferric iron reductase FhuF-like transporter JHS95_21525 PF04183 IucA / IucC family JHS95_21535 PF06276 Ferric iron reductase FhuF-like transporter JHS95_21535 PF04183 IucA / IucC family JHS95_21540 PF02655 ATP-grasp domain JHS95_21540 PF00206 Lyase JHS95_21545 PF07715 TonB-dependent Receptor Plug Domain JHS95_21545 PF00593 TonB dependent receptor JHS95_21550 PF07660 Secretin and TonB N terminus short domain JHS95_21550 PF07715 TonB-dependent Receptor Plug Domain JHS95_21550 PF00593 TonB dependent receptor JHS95_21555 PF01497 Periplasmic binding protein JHS95_21560 PF01032 FecCD transport family JHS95_21565 PF01032 FecCD transport family JHS95_21570 PF00005 ABC transporter JHS95_21575 PF00672 HAMP domain JHS95_21575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS95_21575 PF17200 Single Cache domain 2 JHS95_21580 PF00675 Insulinase (Peptidase family M16) JHS95_21580 PF05193 Peptidase M16 inactive domain JHS95_21590 PF01551 Peptidase family M23 JHS95_21590 PF04225 Opacity-associated protein A LysM-like domain JHS95_21600 PF07690 Major Facilitator Superfamily JHS95_21610 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JHS95_21610 PF00128 Alpha amylase, catalytic domain JHS95_21615 PF02264 LamB porin JHS95_21630 PF00128 Alpha amylase, catalytic domain JHS95_21630 PF16657 Maltogenic Amylase, C-terminal domain JHS95_21630 PF02903 Alpha amylase, N-terminal ig-like domain JHS95_21635 PF04231 Endonuclease I JHS95_21640 PF17967 Pullulanase N2 domain JHS95_21640 PF18494 Pullulanase Ins domain JHS95_21640 PF03714 Bacterial pullanase-associated domain JHS95_21640 PF11852 Domain of unknown function (DUF3372) JHS95_21640 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JHS95_21655 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain JHS95_21655 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain JHS95_21655 PF01276 Orn/Lys/Arg decarboxylase, major domain JHS95_21660 PF13520 Amino acid permease JHS95_21670 PF08543 Phosphomethylpyrimidine kinase JHS95_21680 PF00375 Sodium:dicarboxylate symporter family JHS95_21685 PF03193 RsgA GTPase JHS95_21690 PF00367 phosphotransferase system, EIIB JHS95_21690 PF02378 Phosphotransferase system, EIIC JHS95_21700 PF02630 SCO1/SenC JHS95_21715 PF17874 MalT-like TPR region JHS95_21715 PF00196 Bacterial regulatory proteins, luxR family JHS95_21720 PF00343 Carbohydrate phosphorylase JHS95_21725 PF02446 4-alpha-glucanotransferase JHS95_21730 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JHS95_21730 PF02806 Alpha amylase, C-terminal all-beta domain JHS95_21730 PF00128 Alpha amylase, catalytic domain JHS95_21735 PF00912 Transglycosylase JHS95_21740 PF00128 Alpha amylase, catalytic domain JHS95_21750 PF07670 Nucleoside recognition JHS95_21755 PF07670 Nucleoside recognition JHS95_21760 PF07687 Peptidase dimerisation domain JHS95_21760 PF01546 Peptidase family M20/M25/M40 JHS95_21765 PF06803 Protein of unknown function (DUF1232) JHS95_21775 PF13737 Transposase DDE domain JHS95_21790 PF00375 Sodium:dicarboxylate symporter family JHS95_21800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_21800 PF03466 LysR substrate binding domain JHS95_21805 PF08803 Putative mono-oxygenase ydhR JHS95_21815 PF13614 AAA domain JHS95_21815 PF13807 G-rich domain on putative tyrosine kinase JHS95_21815 PF02706 Chain length determinant protein JHS95_21820 PF01451 Low molecular weight phosphotyrosine protein phosphatase JHS95_21825 PF18412 Outer-membrane lipoprotein Wza C-terminal domain JHS95_21825 PF10531 SLBB domain JHS95_21825 PF02563 Polysaccharide biosynthesis/export protein JHS95_21830 PF00881 Nitroreductase family JHS95_21835 PF01914 MarC family integral membrane protein JHS95_21840 PF01734 Patatin-like phospholipase JHS95_21845 PF18416 N-acetylglucosamine binding protein domain 2 JHS95_21845 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading JHS95_21850 PF17773 UPF0176 acylphosphatase like domain JHS95_21850 PF00581 Rhodanese-like domain JHS95_21860 PF00561 alpha/beta hydrolase fold JHS95_21865 PF00768 D-alanyl-D-alanine carboxypeptidase JHS95_21865 PF07943 Penicillin-binding protein 5, C-terminal domain JHS95_21870 PF00128 Alpha amylase, catalytic domain JHS95_21870 PF00686 Starch binding domain JHS95_21875 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JHS95_21875 PF12833 Helix-turn-helix domain JHS95_21880 PF00881 Nitroreductase family JHS95_21890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_21890 PF03466 LysR substrate binding domain JHS95_21895 PF09905 DNA-binding protein VF530 JHS95_21905 PF00970 Oxidoreductase FAD-binding domain JHS95_21905 PF00175 Oxidoreductase NAD-binding domain JHS95_21915 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) JHS95_21920 PF01594 AI-2E family transporter JHS95_21930 PF13533 Biotin-lipoyl like JHS95_21950 PF00892 EamA-like transporter family JHS95_21955 PF03466 LysR substrate binding domain JHS95_21955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_21960 PF07690 Major Facilitator Superfamily JHS95_21970 PF00583 Acetyltransferase (GNAT) family JHS95_21980 PF00923 Transaldolase/Fructose-6-phosphate aldolase JHS95_21985 PF04055 Radical SAM superfamily JHS95_21990 PF01228 Glycine radical JHS95_21990 PF02901 Pyruvate formate lyase-like JHS95_22010 PF08000 Bacterial PH domain JHS95_22020 PF00691 OmpA family JHS95_22020 PF13677 Membrane MotB of proton-channel complex MotA/MotB JHS95_22025 PF01618 MotA/TolQ/ExbB proton channel family JHS95_22030 PF04545 Sigma-70, region 4 JHS95_22030 PF04542 Sigma-70 region 2 JHS95_22035 PF03748 Flagellar basal body-associated protein FliL JHS95_22050 PF02561 Flagellar protein FliS JHS95_22055 PF02465 Flagellar hook-associated protein 2 N-terminus JHS95_22055 PF07196 Flagellin hook IN motif JHS95_22055 PF07195 Flagellar hook-associated protein 2 C-terminus JHS95_22065 PF00700 Bacterial flagellin C-terminal helical region JHS95_22065 PF00669 Bacterial flagellin N-terminal helical region JHS95_22075 PF00771 FHIPEP family JHS95_22080 PF01312 FlhB HrpN YscU SpaS Family JHS95_22085 PF01311 Bacterial export proteins, family 1 JHS95_22090 PF01313 Bacterial export proteins, family 3 JHS95_22095 PF00813 FliP family JHS95_22100 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JHS95_22115 PF02954 Bacterial regulatory protein, Fis family JHS95_22115 PF00158 Sigma-54 interaction domain JHS95_22115 PF00072 Response regulator receiver domain JHS95_22120 PF02049 Flagellar hook-basal body complex protein FliE JHS95_22125 PF08345 Flagellar M-ring protein C-terminal JHS95_22125 PF01514 Secretory protein of YscJ/FliF family JHS95_22130 PF14841 FliG middle domain JHS95_22130 PF14842 FliG N-terminal domain JHS95_22130 PF01706 FliG C-terminal domain JHS95_22140 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JHS95_22140 PF18269 T3SS EscN ATPase C-terminal domain JHS95_22155 PF03466 LysR substrate binding domain JHS95_22155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_22190 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JHS95_22195 PF03466 LysR substrate binding domain JHS95_22195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_22215 PF00072 Response regulator receiver domain JHS95_22215 PF00486 Transcriptional regulatory protein, C terminal JHS95_22220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_22220 PF00512 His Kinase A (phospho-acceptor) domain JHS95_22220 PF08448 PAS fold JHS95_22220 PF13426 PAS domain JHS95_22220 PF00072 Response regulator receiver domain JHS95_22225 PF00080 Copper/zinc superoxide dismutase (SODC) JHS95_22230 PF00266 Aminotransferase class-V JHS95_22235 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS95_22240 PF03707 Bacterial signalling protein N terminal repeat JHS95_22240 PF00990 Diguanylate cyclase, GGDEF domain JHS95_22240 PF00563 EAL domain JHS95_22245 PF00155 Aminotransferase class I and II JHS95_22250 PF08240 Alcohol dehydrogenase GroES-like domain JHS95_22250 PF00107 Zinc-binding dehydrogenase JHS95_22280 PF00194 Eukaryotic-type carbonic anhydrase JHS95_22285 PF00924 Mechanosensitive ion channel JHS95_22295 PF01070 FMN-dependent dehydrogenase JHS95_22300 PF02652 L-lactate permease JHS95_22305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_22305 PF03466 LysR substrate binding domain JHS95_22310 PF00326 Prolyl oligopeptidase family JHS95_22310 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JHS95_22315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS95_22315 PF00005 ABC transporter JHS95_22325 PF13654 AAA domain JHS95_22325 PF05362 Lon protease (S16) C-terminal proteolytic domain JHS95_22330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS95_22330 PF00672 HAMP domain JHS95_22335 PF07238 PilZ domain JHS95_22335 PF12945 Flagellar protein YcgR JHS95_22350 PF00583 Acetyltransferase (GNAT) family JHS95_22355 PF12838 4Fe-4S dicluster domain JHS95_22355 PF12800 4Fe-4S binding domain JHS95_22360 PF12801 4Fe-4S binding domain JHS95_22360 PF13237 4Fe-4S dicluster domain JHS95_22375 PF00005 ABC transporter JHS95_22375 PF12558 ATP-binding cassette cobalt transporter JHS95_22380 PF07155 ECF-type riboflavin transporter, S component JHS95_22385 PF00529 HlyD membrane-fusion protein of T1SS JHS95_22385 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS95_22390 PF11742 Protein of unknown function (DUF3302) JHS95_22395 PF00990 Diguanylate cyclase, GGDEF domain JHS95_22410 PF01048 Phosphorylase superfamily JHS95_22415 PF08349 Protein of unknown function (DUF1722) JHS95_22420 PF13411 MerR HTH family regulatory protein JHS95_22425 PF03441 FAD binding domain of DNA photolyase JHS95_22425 PF00875 DNA photolyase JHS95_22430 PF01476 LysM domain JHS95_22430 PF03734 L,D-transpeptidase catalytic domain JHS95_22430 PF17969 L,D-transpeptidase C-terminal domain JHS95_22440 PF00271 Helicase conserved C-terminal domain JHS95_22440 PF00270 DEAD/DEAH box helicase JHS95_22445 PF00326 Prolyl oligopeptidase family JHS95_22445 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JHS95_22450 PF07715 TonB-dependent Receptor Plug Domain JHS95_22450 PF00593 TonB dependent receptor JHS95_22470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS95_22470 PF00672 HAMP domain JHS95_22475 PF12849 PBP superfamily domain JHS95_22480 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_22485 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_22490 PF00005 ABC transporter JHS95_22505 PF13519 von Willebrand factor type A domain JHS95_22505 PF07584 Aerotolerance regulator N-terminal JHS95_22510 PF13519 von Willebrand factor type A domain JHS95_22520 PF01882 Protein of unknown function DUF58 JHS95_22525 PF07726 ATPase family associated with various cellular activities (AAA) JHS95_22525 PF17863 AAA lid domain JHS95_22530 PF02743 Cache domain JHS95_22530 PF00672 HAMP domain JHS95_22530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS95_22540 PF00196 Bacterial regulatory proteins, luxR family JHS95_22545 PF00196 Bacterial regulatory proteins, luxR family JHS95_22555 PF00664 ABC transporter transmembrane region JHS95_22555 PF00005 ABC transporter JHS95_22560 PF00529 HlyD membrane-fusion protein of T1SS JHS95_22575 PF00691 OmpA family JHS95_22585 PF01032 FecCD transport family JHS95_22590 PF01497 Periplasmic binding protein JHS95_22595 PF00005 ABC transporter JHS95_22600 PF00593 TonB dependent receptor JHS95_22600 PF07715 TonB-dependent Receptor Plug Domain JHS95_22605 PF00005 ABC transporter JHS95_22605 PF00664 ABC transporter transmembrane region JHS95_22610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_22610 PF13493 Domain of unknown function (DUF4118) JHS95_22610 PF02702 Osmosensitive K+ channel His kinase sensor domain JHS95_22610 PF13493 Domain of unknown function (DUF4118) JHS95_22610 PF02702 Osmosensitive K+ channel His kinase sensor domain JHS95_22610 PF00512 His Kinase A (phospho-acceptor) domain JHS95_22610 PF00512 His Kinase A (phospho-acceptor) domain JHS95_22610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_22615 PF00072 Response regulator receiver domain JHS95_22615 PF00486 Transcriptional regulatory protein, C terminal JHS95_22620 PF02254 TrkA-N domain JHS95_22620 PF02080 TrkA-C domain JHS95_22625 PF02386 Cation transport protein JHS95_22630 PF00563 EAL domain JHS95_22630 PF00990 Diguanylate cyclase, GGDEF domain JHS95_22630 PF03707 Bacterial signalling protein N terminal repeat JHS95_22635 PF00127 Copper binding proteins, plastocyanin/azurin family JHS95_22640 PF13419 Haloacid dehalogenase-like hydrolase JHS95_22650 PF01238 Phosphomannose isomerase type I JHS95_22655 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JHS95_22655 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JHS95_22660 PF12833 Helix-turn-helix domain JHS95_22670 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JHS95_22680 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JHS95_22680 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JHS95_22685 PF06628 Catalase-related immune-responsive JHS95_22685 PF00199 Catalase JHS95_22690 PF13417 Glutathione S-transferase, N-terminal domain JHS95_22695 PF16884 N-terminal domain of oxidoreductase JHS95_22695 PF00107 Zinc-binding dehydrogenase JHS95_22700 PF16925 Tetracyclin repressor-like, C-terminal domain JHS95_22700 PF00440 Bacterial regulatory proteins, tetR family JHS95_22705 PF04266 ASCH domain JHS95_22735 PF13439 Glycosyltransferase Family 4 JHS95_22735 PF00534 Glycosyl transferases group 1 JHS95_22745 PF13614 AAA domain JHS95_22745 PF13807 G-rich domain on putative tyrosine kinase JHS95_22745 PF02706 Chain length determinant protein JHS95_22760 PF02397 Bacterial sugar transferase JHS95_22765 PF00005 ABC transporter JHS95_22765 PF08402 TOBE domain JHS95_22770 PF01547 Bacterial extracellular solute-binding protein JHS95_22775 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_22775 PF14785 Maltose transport system permease protein MalF P2 domain JHS95_22780 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_22840 PF01872 RibD C-terminal domain JHS95_22845 PF02909 Tetracyclin repressor-like, C-terminal domain JHS95_22845 PF00440 Bacterial regulatory proteins, tetR family JHS95_22850 PF02798 Glutathione S-transferase, N-terminal domain JHS95_22855 PF00768 D-alanyl-D-alanine carboxypeptidase JHS95_22855 PF07943 Penicillin-binding protein 5, C-terminal domain JHS95_22865 PF08534 Redoxin JHS95_22865 PF00462 Glutaredoxin JHS95_22870 PF00962 Adenosine/AMP deaminase JHS95_22880 PF00313 'Cold-shock' DNA-binding domain JHS95_22885 PF02678 Pirin JHS95_22885 PF05726 Pirin C-terminal cupin domain JHS95_22890 PF01734 Patatin-like phospholipase JHS95_22900 PF01047 MarR family JHS95_22925 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JHS95_22930 PF08019 Phosphoethanolamine transferase EptA/EptB JHS95_22930 PF00884 Sulfatase JHS95_22935 PF01219 Prokaryotic diacylglycerol kinase JHS95_22945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_22945 PF00672 HAMP domain JHS95_22945 PF00512 His Kinase A (phospho-acceptor) domain JHS95_22950 PF00486 Transcriptional regulatory protein, C terminal JHS95_22950 PF00072 Response regulator receiver domain JHS95_22955 PF00106 short chain dehydrogenase JHS95_22970 PF01323 DSBA-like thioredoxin domain JHS95_22985 PF00255 Glutathione peroxidase JHS95_22990 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JHS95_23000 PF07690 Major Facilitator Superfamily JHS95_23010 PF01966 HD domain JHS95_23020 PF07969 Amidohydrolase family JHS95_23025 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin JHS95_23030 PF00571 CBS domain JHS95_23030 PF03448 MgtE intracellular N domain JHS95_23030 PF01769 Divalent cation transporter JHS95_23035 PF03109 ABC1 family JHS95_23045 PF00155 Aminotransferase class I and II JHS95_23045 PF00392 Bacterial regulatory proteins, gntR family JHS95_23050 PF13520 Amino acid permease JHS95_23055 PF13404 AsnC-type helix-turn-helix domain JHS95_23055 PF01037 Lrp/AsnC ligand binding domain JHS95_23060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_23060 PF03466 LysR substrate binding domain JHS95_23075 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JHS95_23075 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JHS95_23080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_23080 PF00072 Response regulator receiver domain JHS95_23080 PF00672 HAMP domain JHS95_23080 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JHS95_23080 PF00512 His Kinase A (phospho-acceptor) domain JHS95_23080 PF01627 Hpt domain JHS95_23085 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JHS95_23090 PF01554 MatE JHS95_23095 PF04363 Protein of unknown function (DUF496) JHS95_23105 PF04337 Protein of unknown function, DUF480 JHS95_23110 PF01541 GIY-YIG catalytic domain JHS95_23115 PF13407 Periplasmic binding protein domain JHS95_23120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_23120 PF00512 His Kinase A (phospho-acceptor) domain JHS95_23120 PF00072 Response regulator receiver domain JHS95_23120 PF09308 LuxQ, periplasmic JHS95_23130 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS95_23130 PF00529 HlyD membrane-fusion protein of T1SS JHS95_23150 PF01037 Lrp/AsnC ligand binding domain JHS95_23175 PF13721 SecD export protein N-terminal TM region JHS95_23175 PF07549 SecD/SecF GG Motif JHS95_23175 PF02355 Protein export membrane protein JHS95_23180 PF07549 SecD/SecF GG Motif JHS95_23180 PF02355 Protein export membrane protein JHS95_23190 PF01810 LysE type translocator JHS95_23195 PF00106 short chain dehydrogenase JHS95_23200 PF02803 Thiolase, C-terminal domain JHS95_23200 PF00108 Thiolase, N-terminal domain JHS95_23210 PF00561 alpha/beta hydrolase fold JHS95_23210 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus JHS95_23220 PF03264 NapC/NirT cytochrome c family, N-terminal region JHS95_23225 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) JHS95_23230 PF01568 Molydopterin dinucleotide binding domain JHS95_23230 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JHS95_23230 PF00384 Molybdopterin oxidoreductase JHS95_23240 PF12838 4Fe-4S dicluster domain JHS95_23240 PF13187 4Fe-4S dicluster domain JHS95_23245 PF00672 HAMP domain JHS95_23245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_23245 PF07730 Histidine kinase JHS95_23245 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term JHS95_23250 PF00196 Bacterial regulatory proteins, luxR family JHS95_23250 PF00072 Response regulator receiver domain JHS95_23265 PF07687 Peptidase dimerisation domain JHS95_23265 PF01546 Peptidase family M20/M25/M40 JHS95_23270 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JHS95_23275 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS95_23280 PF00873 AcrB/AcrD/AcrF family JHS95_23285 PF12729 Four helix bundle sensory module for signal transduction JHS95_23285 PF00672 HAMP domain JHS95_23285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS95_23290 PF00472 RF-1 domain JHS95_23295 PF13419 Haloacid dehalogenase-like hydrolase JHS95_23300 PF01389 OmpA-like transmembrane domain JHS95_23300 PF00691 OmpA family JHS95_23305 PF00793 DAHP synthetase I family JHS95_23310 PF07690 Major Facilitator Superfamily JHS95_23315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS95_23315 PF08447 PAS fold JHS95_23320 PF02780 Transketolase, C-terminal domain JHS95_23320 PF00456 Transketolase, thiamine diphosphate binding domain JHS95_23320 PF02779 Transketolase, pyrimidine binding domain JHS95_23325 PF00923 Transaldolase/Fructose-6-phosphate aldolase JHS95_23335 PF00704 Glycosyl hydrolases family 18 JHS95_23335 PF08329 Chitinase A, N-terminal domain JHS95_23340 PF00563 EAL domain JHS95_23340 PF00990 Diguanylate cyclase, GGDEF domain JHS95_23340 PF03707 Bacterial signalling protein N terminal repeat JHS95_23345 PF00581 Rhodanese-like domain JHS95_23365 PF00899 ThiF family JHS95_23370 PF00994 Probable molybdopterin binding domain JHS95_23370 PF03454 MoeA C-terminal region (domain IV) JHS95_23370 PF03453 MoeA N-terminal region (domain I and II) JHS95_23375 PF01227 GTP cyclohydrolase I JHS95_23380 PF01566 Natural resistance-associated macrophage protein JHS95_23390 PF00654 Voltage gated chloride channel JHS95_23405 PF00248 Aldo/keto reductase family JHS95_23410 PF00072 Response regulator receiver domain JHS95_23420 PF01256 Carbohydrate kinase JHS95_23420 PF03853 YjeF-related protein N-terminus JHS95_23425 PF00478 IMP dehydrogenase / GMP reductase domain JHS95_23430 PF02899 Phage integrase, N-terminal SAM-like domain JHS95_23430 PF00589 Phage integrase family JHS95_23435 PF00145 C-5 cytosine-specific DNA methylase JHS95_23455 PF00872 Transposase, Mutator family JHS95_23470 PF01965 DJ-1/PfpI family JHS95_23475 PF16123 Hydroxyacylglutathione hydrolase C-terminus JHS95_23475 PF00753 Metallo-beta-lactamase superfamily JHS95_23495 PF01464 Transglycosylase SLT domain JHS95_23505 PF08751 TrwC relaxase JHS95_23505 PF18272 single-stranded DNA binding TraI N-terminal subdomain JHS95_23505 PF07057 DNA helicase TraI JHS95_23505 PF18340 DNA relaxase TraI 2B/2B-like domain JHS95_23510 PF04231 Endonuclease I JHS95_23520 PF10412 Type IV secretion-system coupling protein DNA-binding domain JHS95_23520 PF12615 F sex factor protein N terminal JHS95_23585 PF06986 Type-1V conjugative transfer system mating pair stabilisation JHS95_23640 PF06834 TraU protein JHS95_23645 PF12477 Sex factor F TraW protein N terminal JHS95_23655 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer JHS95_23700 PF02311 AraC-like ligand binding domain JHS95_23700 PF12833 Helix-turn-helix domain JHS95_23705 PF02743 Cache domain JHS95_23705 PF00672 HAMP domain JHS95_23705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS95_23745 PF03707 Bacterial signalling protein N terminal repeat JHS95_23745 PF00563 EAL domain JHS95_23745 PF00990 Diguanylate cyclase, GGDEF domain JHS95_23760 PF00171 Aldehyde dehydrogenase family JHS95_23765 PF00465 Iron-containing alcohol dehydrogenase JHS95_23775 PF13193 AMP-binding enzyme C-terminal domain JHS95_23775 PF00501 AMP-binding enzyme JHS95_23780 PF01012 Electron transfer flavoprotein domain JHS95_23780 PF00766 Electron transfer flavoprotein FAD-binding domain JHS95_23785 PF01012 Electron transfer flavoprotein domain JHS95_23795 PF12399 Branched-chain amino acid ATP-binding cassette transporter JHS95_23795 PF00005 ABC transporter JHS95_23820 PF00005 ABC transporter JHS95_23830 PF05724 Thiopurine S-methyltransferase (TPMT) JHS95_23840 PF00034 Cytochrome c JHS95_23850 PF13411 MerR HTH family regulatory protein JHS95_23855 PF02627 Carboxymuconolactone decarboxylase family JHS95_23860 PF02567 Phenazine biosynthesis-like protein JHS95_23870 PF02322 Cytochrome bd terminal oxidase subunit II JHS95_23875 PF01654 Cytochrome bd terminal oxidase subunit I JHS95_23880 PF00392 Bacterial regulatory proteins, gntR family JHS95_23880 PF00155 Aminotransferase class I and II JHS95_23885 PF12464 Maltose acetyltransferase JHS95_23885 PF14602 Hexapeptide repeat of succinyl-transferase JHS95_23890 PF00924 Mechanosensitive ion channel JHS95_23890 PF12795 Mechanosensitive ion channel porin domain JHS95_23890 PF12794 Mechanosensitive ion channel inner membrane domain 1 JHS95_23905 PF00672 HAMP domain JHS95_23905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_23905 PF00512 His Kinase A (phospho-acceptor) domain JHS95_23905 PF01627 Hpt domain JHS95_23905 PF00072 Response regulator receiver domain JHS95_23905 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JHS95_23910 PF00682 HMGL-like JHS95_23915 PF00364 Biotin-requiring enzyme JHS95_23915 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JHS95_23915 PF02785 Biotin carboxylase C-terminal domain JHS95_23915 PF00289 Biotin carboxylase, N-terminal domain JHS95_23920 PF00378 Enoyl-CoA hydratase/isomerase JHS95_23925 PF01039 Carboxyl transferase domain JHS95_23930 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JHS95_23930 PF02770 Acyl-CoA dehydrogenase, middle domain JHS95_23930 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JHS95_23935 PF00376 MerR family regulatory protein JHS95_23935 PF09278 MerR, DNA binding JHS95_23940 PF02803 Thiolase, C-terminal domain JHS95_23940 PF00108 Thiolase, N-terminal domain JHS95_23945 PF00171 Aldehyde dehydrogenase family JHS95_23950 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JHS95_23950 PF02770 Acyl-CoA dehydrogenase, middle domain JHS95_23950 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JHS95_23955 PF00378 Enoyl-CoA hydratase/isomerase JHS95_23965 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JHS95_23965 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JHS95_23975 PF17151 Periplasmic sensor domain JHS95_23975 PF00990 Diguanylate cyclase, GGDEF domain JHS95_23980 PF13977 BetI-type transcriptional repressor, C-terminal JHS95_23980 PF00440 Bacterial regulatory proteins, tetR family JHS95_23985 PF00171 Aldehyde dehydrogenase family JHS95_23990 PF05199 GMC oxidoreductase JHS95_23990 PF00732 GMC oxidoreductase JHS95_23995 PF04069 Substrate binding domain of ABC-type glycine betaine transport system JHS95_24000 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_24005 PF00005 ABC transporter JHS95_24005 PF00571 CBS domain JHS95_24010 PF00881 Nitroreductase family JHS95_24020 PF16200 C-terminal region of band_7 JHS95_24020 PF01145 SPFH domain / Band 7 family JHS95_24030 PF03707 Bacterial signalling protein N terminal repeat JHS95_24030 PF13188 PAS domain JHS95_24030 PF00563 EAL domain JHS95_24030 PF00990 Diguanylate cyclase, GGDEF domain JHS95_24035 PF03150 Di-haem cytochrome c peroxidase JHS95_24035 PF00034 Cytochrome c JHS95_24040 PF00512 His Kinase A (phospho-acceptor) domain JHS95_24040 PF00072 Response regulator receiver domain JHS95_24040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_24040 PF09308 LuxQ, periplasmic JHS95_24055 PF04116 Fatty acid hydroxylase superfamily JHS95_24095 PF01048 Phosphorylase superfamily JHS95_24100 PF00563 EAL domain JHS95_24100 PF00990 Diguanylate cyclase, GGDEF domain JHS95_24105 PF05025 RbsD / FucU transport protein family JHS95_24110 PF00005 ABC transporter JHS95_24115 PF02653 Branched-chain amino acid transport system / permease component JHS95_24120 PF13407 Periplasmic binding protein domain JHS95_24125 PF00294 pfkB family carbohydrate kinase JHS95_24130 PF00356 Bacterial regulatory proteins, lacI family JHS95_24140 PF04973 Nicotinamide mononucleotide transporter JHS95_24145 PF01048 Phosphorylase superfamily JHS95_24165 PF00072 Response regulator receiver domain JHS95_24165 PF00486 Transcriptional regulatory protein, C terminal JHS95_24180 PF00245 Alkaline phosphatase JHS95_24190 PF01483 Proprotein convertase P-domain JHS95_24190 PF00082 Subtilase family JHS95_24200 PF00990 Diguanylate cyclase, GGDEF domain JHS95_24200 PF00072 Response regulator receiver domain JHS95_24205 PF03222 Tryptophan/tyrosine permease family JHS95_24210 PF00583 Acetyltransferase (GNAT) family JHS95_24215 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JHS95_24215 PF01568 Molydopterin dinucleotide binding domain JHS95_24215 PF00384 Molybdopterin oxidoreductase JHS95_24220 PF14824 Sirohaem biosynthesis protein central JHS95_24220 PF10414 Sirohaem synthase dimerisation region JHS95_24220 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JHS95_24225 PF02885 Glycosyl transferase family, helical bundle domain JHS95_24225 PF00591 Glycosyl transferase family, a/b domain JHS95_24230 PF01738 Dienelactone hydrolase family JHS95_24235 PF03861 ANTAR domain JHS95_24235 PF08376 Nitrate and nitrite sensing JHS95_24245 PF00528 Binding-protein-dependent transport system inner membrane component JHS95_24250 PF00005 ABC transporter JHS95_24255 PF04324 BFD-like [2Fe-2S] binding domain JHS95_24255 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JHS95_24255 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS95_24255 PF13806 Rieske-like [2Fe-2S] domain JHS95_24255 PF18267 Rubredoxin NAD+ reductase C-terminal domain JHS95_24255 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JHS95_24270 PF00440 Bacterial regulatory proteins, tetR family JHS95_24270 PF08361 MAATS-type transcriptional repressor, C-terminal region JHS95_24285 PF00072 Response regulator receiver domain JHS95_24285 PF00211 Adenylate and Guanylate cyclase catalytic domain JHS95_24310 PF00069 Protein kinase domain JHS95_24310 PF03793 PASTA domain JHS95_24325 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE JHS95_24330 PF00691 OmpA family JHS95_24330 PF13677 Membrane MotB of proton-channel complex MotA/MotB JHS95_24335 PF06744 Type VI secretion protein IcmF C-terminal JHS95_24335 PF14331 ImcF-related N-terminal domain JHS95_24335 PF06761 Intracellular multiplication and human macrophage-killing JHS95_24355 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 JHS95_24360 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath JHS95_24365 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath JHS95_24380 PF05947 Type VI secretion system, TssF JHS95_24390 PF00004 ATPase family associated with various cellular activities (AAA) JHS95_24390 PF07724 AAA domain (Cdc48 subfamily) JHS95_24390 PF10431 C-terminal, D2-small domain, of ClpB protein JHS95_24390 PF17871 AAA lid domain JHS95_24400 PF06715 Gp5 C-terminal repeat (3 copies) JHS95_24400 PF04717 Type VI secretion system, phage-baseplate injector JHS95_24415 PF00149 Calcineurin-like phosphoesterase JHS95_24415 PF12320 Type 5 capsule protein repressor C-terminal domain JHS95_24420 PF13476 AAA domain JHS95_24440 PF08212 Lipocalin-like domain JHS95_24450 PF07690 Major Facilitator Superfamily JHS95_24460 PF03606 C4-dicarboxylate anaerobic carrier JHS95_24465 PF00034 Cytochrome c JHS95_24470 PF01212 Beta-eliminating lyase JHS95_24480 PF07728 AAA domain (dynein-related subfamily) JHS95_24480 PF17868 AAA lid domain JHS95_24480 PF12592 Protein of unknown function (DUF3763) JHS95_24485 PF05762 VWA domain containing CoxE-like protein JHS95_24500 PF03466 LysR substrate binding domain JHS95_24500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS95_24505 PF01565 FAD binding domain JHS95_24505 PF09330 D-lactate dehydrogenase, membrane binding JHS95_24520 PF01168 Alanine racemase, N-terminal domain JHS95_24520 PF00842 Alanine racemase, C-terminal domain JHS95_24525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS95_24525 PF00672 HAMP domain JHS95_24540 PF09154 Domain of unknown function (DUF1939) JHS95_24540 PF00128 Alpha amylase, catalytic domain JHS95_24575 PF03707 Bacterial signalling protein N terminal repeat JHS95_24575 PF00990 Diguanylate cyclase, GGDEF domain JHS95_24575 PF00563 EAL domain JHS95_24585 PF03707 Bacterial signalling protein N terminal repeat JHS95_24585 PF00990 Diguanylate cyclase, GGDEF domain JHS95_24585 PF00563 EAL domain JHS95_24590 PF14760 Rnk N-terminus JHS95_24590 PF01272 Transcription elongation factor, GreA/GreB, C-term JHS95_24595 PF04324 BFD-like [2Fe-2S] binding domain JHS95_24595 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JHS95_24595 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS95_24595 PF18267 Rubredoxin NAD+ reductase C-terminal domain JHS95_24595 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JHS95_24600 PF13806 Rieske-like [2Fe-2S] domain JHS95_24605 PF01226 Formate/nitrite transporter JHS95_24610 PF14824 Sirohaem biosynthesis protein central JHS95_24610 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JHS95_24610 PF10414 Sirohaem synthase dimerisation region JHS95_24625 PF03605 Anaerobic c4-dicarboxylate membrane transporter JHS95_24635 PF07715 TonB-dependent Receptor Plug Domain JHS95_24635 PF00593 TonB dependent receptor JHS95_24650 PF11756 Nitrous oxide-stimulated promoter JHS95_24655 PF01554 MatE JHS95_24660 PF07494 Two component regulator propeller JHS95_24660 PF07495 Y_Y_Y domain JHS95_24660 PF00072 Response regulator receiver domain JHS95_24660 PF12833 Helix-turn-helix domain JHS95_24660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS95_24660 PF00512 His Kinase A (phospho-acceptor) domain JHS95_24665 PF07690 Major Facilitator Superfamily JHS95_24670 PF00085 Thioredoxin JHS95_24675 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JHS95_24675 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JHS95_24695 PF01238 Phosphomannose isomerase type I JHS95_24710 PF13749 Putative ATP-dependent DNA helicase recG C-terminal JHS95_24710 PF00270 DEAD/DEAH box helicase JHS95_24710 PF17191 RecG wedge domain JHS95_24810 PF03527 RHS protein JHS95_24810 PF05593 RHS Repeat JHS95_24815 PF03527 RHS protein JHS95_24815 PF05593 RHS Repeat JHS95_24860 PF00565 Staphylococcal nuclease homologue JHS95_24880 PF01343 Peptidase family S49 JHS95_24955 PF13693 Winged helix-turn-helix DNA-binding JHS95_24970 PF06122 Conjugative relaxosome accessory transposon protein JHS95_25020 PF12833 Helix-turn-helix domain JHS95_25025 PF00440 Bacterial regulatory proteins, tetR family JHS95_25030 PF07690 Major Facilitator Superfamily JHS95_25035 PF02909 Tetracyclin repressor-like, C-terminal domain JHS95_25035 PF00440 Bacterial regulatory proteins, tetR family JHS95_25060 PF00186 Dihydrofolate reductase JHS95_25065 PF13427 Domain of unknown function (DUF4111) JHS95_25065 PF01909 Nucleotidyltransferase domain JHS95_25070 PF00893 Small Multidrug Resistance protein JHS95_25075 PF00809 Pterin binding enzyme