locus-tag class description FDP11_00010 PF12849 PBP superfamily domain FDP11_00015 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_00020 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_00025 PF00005 ABC transporter FDP11_00040 PF13519 von Willebrand factor type A domain FDP11_00045 PF13519 von Willebrand factor type A domain FDP11_00055 PF01882 Protein of unknown function DUF58 FDP11_00060 PF17863 AAA lid domain FDP11_00060 PF07726 ATPase family associated with various cellular activities (AAA) FDP11_00070 PF02743 Cache domain FDP11_00070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDP11_00070 PF00672 HAMP domain FDP11_00080 PF00196 Bacterial regulatory proteins, luxR family FDP11_00085 PF00196 Bacterial regulatory proteins, luxR family FDP11_00095 PF00005 ABC transporter FDP11_00095 PF00664 ABC transporter transmembrane region FDP11_00100 PF00529 HlyD membrane-fusion protein of T1SS FDP11_00110 PF01032 FecCD transport family FDP11_00115 PF01497 Periplasmic binding protein FDP11_00120 PF00005 ABC transporter FDP11_00125 PF00593 TonB dependent receptor FDP11_00125 PF07715 TonB-dependent Receptor Plug Domain FDP11_00130 PF00664 ABC transporter transmembrane region FDP11_00130 PF00005 ABC transporter FDP11_00135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_00135 PF02702 Osmosensitive K+ channel His kinase sensor domain FDP11_00135 PF13493 Domain of unknown function (DUF4118) FDP11_00135 PF00512 His Kinase A (phospho-acceptor) domain FDP11_00140 PF00072 Response regulator receiver domain FDP11_00140 PF00486 Transcriptional regulatory protein, C terminal FDP11_00145 PF02080 TrkA-C domain FDP11_00145 PF02254 TrkA-N domain FDP11_00150 PF02386 Cation transport protein FDP11_00155 PF00563 EAL domain FDP11_00155 PF03707 Bacterial signalling protein N terminal repeat FDP11_00155 PF00990 Diguanylate cyclase, GGDEF domain FDP11_00160 PF00127 Copper binding proteins, plastocyanin/azurin family FDP11_00165 PF13419 Haloacid dehalogenase-like hydrolase FDP11_00175 PF01238 Phosphomannose isomerase type I FDP11_00180 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FDP11_00180 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FDP11_00185 PF12833 Helix-turn-helix domain FDP11_00195 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FDP11_00205 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FDP11_00205 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FDP11_00210 PF00199 Catalase FDP11_00210 PF06628 Catalase-related immune-responsive FDP11_00215 PF13417 Glutathione S-transferase, N-terminal domain FDP11_00220 PF00107 Zinc-binding dehydrogenase FDP11_00220 PF16884 N-terminal domain of oxidoreductase FDP11_00225 PF16925 Tetracyclin repressor-like, C-terminal domain FDP11_00225 PF00440 Bacterial regulatory proteins, tetR family FDP11_00260 PF13439 Glycosyltransferase Family 4 FDP11_00260 PF00534 Glycosyl transferases group 1 FDP11_00270 PF02706 Chain length determinant protein FDP11_00270 PF13807 G-rich domain on putative tyrosine kinase FDP11_00270 PF13614 AAA domain FDP11_00285 PF02397 Bacterial sugar transferase FDP11_00290 PF00005 ABC transporter FDP11_00290 PF08402 TOBE domain FDP11_00295 PF01547 Bacterial extracellular solute-binding protein FDP11_00300 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_00300 PF14785 Maltose transport system permease protein MalF P2 domain FDP11_00305 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_00335 PF05661 Protein of unknown function (DUF808) FDP11_00340 PF01979 Amidohydrolase family FDP11_00350 PF01679 Proteolipid membrane potential modulator FDP11_00360 PF03476 MOSC N-terminal beta barrel domain FDP11_00360 PF03473 MOSC domain FDP11_00360 PF00111 2Fe-2S iron-sulfur cluster binding domain FDP11_00360 PF03476 MOSC N-terminal beta barrel domain FDP11_00360 PF03473 MOSC domain FDP11_00360 PF00111 2Fe-2S iron-sulfur cluster binding domain FDP11_00365 PF02540 NAD synthase FDP11_00370 PF01467 Cytidylyltransferase-like FDP11_00415 PF00005 ABC transporter FDP11_00420 PF01032 FecCD transport family FDP11_00430 PF02472 Biopolymer transport protein ExbD/TolR FDP11_00435 PF01618 MotA/TolQ/ExbB proton channel family FDP11_00440 PF03544 Gram-negative bacterial TonB protein C-terminal FDP11_00445 PF04055 Radical SAM superfamily FDP11_00450 PF06228 Haem utilisation ChuX/HutX FDP11_00455 PF01243 Pyridoxamine 5'-phosphate oxidase FDP11_00465 PF01584 CheW-like domain FDP11_00465 PF00072 Response regulator receiver domain FDP11_00485 PF03466 LysR substrate binding domain FDP11_00485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_00490 PF07690 Major Facilitator Superfamily FDP11_00500 PF08502 LeuA allosteric (dimerisation) domain FDP11_00500 PF00682 HMGL-like FDP11_00520 PF00082 Subtilase family FDP11_00540 PF00141 Peroxidase FDP11_00545 PF00210 Ferritin-like domain FDP11_00555 PF03466 LysR substrate binding domain FDP11_00555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_00570 PF04151 Bacterial pre-peptidase C-terminal domain FDP11_00570 PF08453 Peptidase family M9 N-terminal FDP11_00570 PF01752 Collagenase FDP11_00580 PF00128 Alpha amylase, catalytic domain FDP11_00595 PF02254 TrkA-N domain FDP11_00595 PF00999 Sodium/hydrogen exchanger family FDP11_00600 PF02525 Flavodoxin-like fold FDP11_00605 PF00582 Universal stress protein family FDP11_00610 PF00005 ABC transporter FDP11_00610 PF16326 ABC transporter C-terminal domain FDP11_00610 PF12848 ABC transporter FDP11_00625 PF13533 Biotin-lipoyl like FDP11_00630 PF00873 AcrB/AcrD/AcrF family FDP11_00635 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) FDP11_00645 PF13302 Acetyltransferase (GNAT) domain FDP11_00655 PF13185 GAF domain FDP11_00655 PF00990 Diguanylate cyclase, GGDEF domain FDP11_00665 PF00175 Oxidoreductase NAD-binding domain FDP11_00665 PF00111 2Fe-2S iron-sulfur cluster binding domain FDP11_00665 PF00970 Oxidoreductase FAD-binding domain FDP11_00675 PF00873 AcrB/AcrD/AcrF family FDP11_00700 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FDP11_00700 PF12838 4Fe-4S dicluster domain FDP11_00700 PF00384 Molybdopterin oxidoreductase FDP11_00700 PF01568 Molydopterin dinucleotide binding domain FDP11_00700 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region FDP11_00720 PF00005 ABC transporter FDP11_00730 PF00672 HAMP domain FDP11_00730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDP11_00740 PF10282 Lactonase, 7-bladed beta-propeller FDP11_00745 PF02567 Phenazine biosynthesis-like protein FDP11_00750 PF01161 Phosphatidylethanolamine-binding protein FDP11_00760 PF01758 Sodium Bile acid symporter family FDP11_00780 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FDP11_00785 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FDP11_00785 PF02378 Phosphotransferase system, EIIC FDP11_00790 PF00107 Zinc-binding dehydrogenase FDP11_00790 PF08240 Alcohol dehydrogenase GroES-like domain FDP11_00825 PF03222 Tryptophan/tyrosine permease family FDP11_00835 PF02743 Cache domain FDP11_00835 PF00672 HAMP domain FDP11_00835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDP11_00865 PF01551 Peptidase family M23 FDP11_00865 PF08525 Opacity-associated protein A N-terminal motif FDP11_00865 PF01476 LysM domain FDP11_00870 PF00563 EAL domain FDP11_00870 PF08447 PAS fold FDP11_00870 PF08448 PAS fold FDP11_00870 PF00990 Diguanylate cyclase, GGDEF domain FDP11_00875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_00875 PF03466 LysR substrate binding domain FDP11_00880 PF07690 Major Facilitator Superfamily FDP11_00900 PF00462 Glutaredoxin FDP11_00905 PF00892 EamA-like transporter family FDP11_00920 PF01557 Fumarylacetoacetate (FAA) hydrolase family FDP11_00935 PF12833 Helix-turn-helix domain FDP11_00940 PF01810 LysE type translocator FDP11_00950 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FDP11_00950 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FDP11_00950 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FDP11_00950 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FDP11_00955 PF02790 Cytochrome C oxidase subunit II, transmembrane domain FDP11_00955 PF00116 Cytochrome C oxidase subunit II, periplasmic domain FDP11_00960 PF00115 Cytochrome C and Quinol oxidase polypeptide I FDP11_00965 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 FDP11_00970 PF00510 Cytochrome c oxidase subunit III FDP11_00990 PF02628 Cytochrome oxidase assembly protein FDP11_00995 PF01040 UbiA prenyltransferase family FDP11_01000 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FDP11_01000 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FDP11_01035 PF00313 'Cold-shock' DNA-binding domain FDP11_01040 PF03889 Alternative ribosome-rescue factor A FDP11_01045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDP11_01045 PF08447 PAS fold FDP11_01045 PF13426 PAS domain FDP11_01055 PF00990 Diguanylate cyclase, GGDEF domain FDP11_01070 PF00005 ABC transporter FDP11_01070 PF02687 FtsX-like permease family FDP11_01070 PF12704 MacB-like periplasmic core domain FDP11_01075 PF00005 ABC transporter FDP11_01075 PF02687 FtsX-like permease family FDP11_01075 PF12704 MacB-like periplasmic core domain FDP11_01085 PF17200 Single Cache domain 2 FDP11_01085 PF00672 HAMP domain FDP11_01085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDP11_01090 PF00210 Ferritin-like domain FDP11_01100 PF07995 Glucose / Sorbosone dehydrogenase FDP11_01105 PF00465 Iron-containing alcohol dehydrogenase FDP11_01120 PF00892 EamA-like transporter family FDP11_01145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_01145 PF03466 LysR substrate binding domain FDP11_01155 PF00501 AMP-binding enzyme FDP11_01155 PF13193 AMP-binding enzyme C-terminal domain FDP11_01160 PF00351 Biopterin-dependent aromatic amino acid hydroxylase FDP11_01165 PF01329 Pterin 4 alpha carbinolamine dehydratase FDP11_01190 PF12843 Putative quorum-sensing-regulated virulence factor FDP11_01195 PF00271 Helicase conserved C-terminal domain FDP11_01195 PF00270 DEAD/DEAH box helicase FDP11_01200 PF09905 DNA-binding protein VF530 FDP11_01205 PF00291 Pyridoxal-phosphate dependent enzyme FDP11_01215 PF01470 Pyroglutamyl peptidase FDP11_01225 PF02492 CobW/HypB/UreG, nucleotide-binding domain FDP11_01225 PF07683 Cobalamin synthesis protein cobW C-terminal domain FDP11_01230 PF00271 Helicase conserved C-terminal domain FDP11_01230 PF00270 DEAD/DEAH box helicase FDP11_01250 PF00563 EAL domain FDP11_01250 PF12792 CSS motif domain associated with EAL FDP11_01255 PF00005 ABC transporter FDP11_01260 PF12729 Four helix bundle sensory module for signal transduction FDP11_01260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDP11_01260 PF00672 HAMP domain FDP11_01275 PF03466 LysR substrate binding domain FDP11_01275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_01280 PF00884 Sulfatase FDP11_01285 PF04055 Radical SAM superfamily FDP11_01285 PF13186 Iron-sulfur cluster-binding domain FDP11_01290 PF03466 LysR substrate binding domain FDP11_01290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_01300 PF01575 MaoC like domain FDP11_01305 PF12849 PBP superfamily domain FDP11_01315 PF12833 Helix-turn-helix domain FDP11_01320 PF00575 S1 RNA binding domain FDP11_01320 PF08206 Ribonuclease B OB domain FDP11_01320 PF00773 RNB domain FDP11_01325 PF03880 DbpA RNA binding domain FDP11_01325 PF00270 DEAD/DEAH box helicase FDP11_01325 PF00271 Helicase conserved C-terminal domain FDP11_01330 PF00563 EAL domain FDP11_01330 PF00990 Diguanylate cyclase, GGDEF domain FDP11_01330 PF13426 PAS domain FDP11_01340 PF00871 Acetokinase family FDP11_01345 PF08447 PAS fold FDP11_01345 PF13426 PAS domain FDP11_01345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDP11_01355 PF10063 Uncharacterized integral membrane protein (DUF2301) FDP11_01360 PF00682 HMGL-like FDP11_01365 PF00378 Enoyl-CoA hydratase/isomerase FDP11_01370 PF01039 Carboxyl transferase domain FDP11_01375 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDP11_01375 PF02770 Acyl-CoA dehydrogenase, middle domain FDP11_01375 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDP11_01380 PF00376 MerR family regulatory protein FDP11_01380 PF09278 MerR, DNA binding FDP11_01385 PF02803 Thiolase, C-terminal domain FDP11_01385 PF00108 Thiolase, N-terminal domain FDP11_01390 PF00171 Aldehyde dehydrogenase family FDP11_01395 PF02770 Acyl-CoA dehydrogenase, middle domain FDP11_01395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDP11_01395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDP11_01400 PF00378 Enoyl-CoA hydratase/isomerase FDP11_01405 PF00378 Enoyl-CoA hydratase/isomerase FDP11_01410 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FDP11_01410 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FDP11_01420 PF00116 Cytochrome C oxidase subunit II, periplasmic domain FDP11_01420 PF06481 COX Aromatic Rich Motif FDP11_01425 PF00115 Cytochrome C and Quinol oxidase polypeptide I FDP11_01430 PF00510 Cytochrome c oxidase subunit III FDP11_01440 PF01040 UbiA prenyltransferase family FDP11_01455 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FDP11_01460 PF08031 Berberine and berberine like FDP11_01460 PF01565 FAD binding domain FDP11_01465 PF00005 ABC transporter FDP11_01470 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDP11_01475 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_01480 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_01490 PF03466 LysR substrate binding domain FDP11_01490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_01495 PF02798 Glutathione S-transferase, N-terminal domain FDP11_01495 PF00043 Glutathione S-transferase, C-terminal domain FDP11_01510 PF00364 Biotin-requiring enzyme FDP11_01510 PF02817 e3 binding domain FDP11_01510 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FDP11_01515 PF02780 Transketolase, C-terminal domain FDP11_01515 PF02779 Transketolase, pyrimidine binding domain FDP11_01520 PF00676 Dehydrogenase E1 component FDP11_01535 PF00012 Hsp70 protein FDP11_01540 PF04314 Copper chaperone PCu(A)C FDP11_01570 PF00072 Response regulator receiver domain FDP11_01570 PF00486 Transcriptional regulatory protein, C terminal FDP11_01585 PF00245 Alkaline phosphatase FDP11_01595 PF00082 Subtilase family FDP11_01595 PF01483 Proprotein convertase P-domain FDP11_01605 PF00990 Diguanylate cyclase, GGDEF domain FDP11_01605 PF00072 Response regulator receiver domain FDP11_01615 PF03222 Tryptophan/tyrosine permease family FDP11_01625 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FDP11_01625 PF00384 Molybdopterin oxidoreductase FDP11_01625 PF01568 Molydopterin dinucleotide binding domain FDP11_01630 PF10414 Sirohaem synthase dimerisation region FDP11_01630 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FDP11_01630 PF14824 Sirohaem biosynthesis protein central FDP11_01635 PF02885 Glycosyl transferase family, helical bundle domain FDP11_01635 PF00591 Glycosyl transferase family, a/b domain FDP11_01645 PF01738 Dienelactone hydrolase family FDP11_01650 PF03861 ANTAR domain FDP11_01650 PF08376 Nitrate and nitrite sensing FDP11_01665 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_01670 PF00005 ABC transporter FDP11_01675 PF04324 BFD-like [2Fe-2S] binding domain FDP11_01675 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDP11_01675 PF18267 Rubredoxin NAD+ reductase C-terminal domain FDP11_01675 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FDP11_01675 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FDP11_01675 PF13806 Rieske-like [2Fe-2S] domain FDP11_01690 PF00440 Bacterial regulatory proteins, tetR family FDP11_01690 PF08361 MAATS-type transcriptional repressor, C-terminal region FDP11_01705 PF00072 Response regulator receiver domain FDP11_01705 PF00211 Adenylate and Guanylate cyclase catalytic domain FDP11_01730 PF03793 PASTA domain FDP11_01730 PF00069 Protein kinase domain FDP11_01750 PF13677 Membrane MotB of proton-channel complex MotA/MotB FDP11_01750 PF00691 OmpA family FDP11_01810 PF10431 C-terminal, D2-small domain, of ClpB protein FDP11_01810 PF17871 AAA lid domain FDP11_01810 PF07724 AAA domain (Cdc48 subfamily) FDP11_01810 PF00004 ATPase family associated with various cellular activities (AAA) FDP11_01820 PF04717 Type VI secretion system, phage-baseplate injector FDP11_01820 PF16671 Actin cross-linking domain FDP11_01835 PF00149 Calcineurin-like phosphoesterase FDP11_01835 PF12320 Type 5 capsule protein repressor C-terminal domain FDP11_01840 PF13476 AAA domain FDP11_01860 PF08212 Lipocalin-like domain FDP11_01870 PF07690 Major Facilitator Superfamily FDP11_01885 PF00072 Response regulator receiver domain FDP11_01885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_01890 PF00155 Aminotransferase class I and II FDP11_01895 PF01926 50S ribosome-binding GTPase FDP11_01905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_01905 PF03466 LysR substrate binding domain FDP11_01910 PF00884 Sulfatase FDP11_01915 PF13186 Iron-sulfur cluster-binding domain FDP11_01915 PF04055 Radical SAM superfamily FDP11_01950 PF04002 RadC-like JAB domain FDP11_01965 PF12431 Transcriptional regulator FDP11_01965 PF00072 Response regulator receiver domain FDP11_01970 PF17203 Single cache domain 3 FDP11_01970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_01975 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit FDP11_01980 PF00364 Biotin-requiring enzyme FDP11_01980 PF02436 Conserved carboxylase domain FDP11_01980 PF00682 HMGL-like FDP11_01985 PF04277 Oxaloacetate decarboxylase, gamma chain FDP11_01990 PF03390 2-hydroxycarboxylate transporter family FDP11_01995 PF08218 Citrate lyase ligase C-terminal domain FDP11_02000 PF06857 Malonate decarboxylase delta subunit (MdcD) FDP11_02005 PF03328 HpcH/HpaI aldolase/citrate lyase family FDP11_02010 PF04223 Citrate lyase, alpha subunit (CitF) FDP11_02015 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase FDP11_02020 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase FDP11_02035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_02035 PF03466 LysR substrate binding domain FDP11_02050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_02050 PF03466 LysR substrate binding domain FDP11_02055 PF00072 Response regulator receiver domain FDP11_02055 PF00990 Diguanylate cyclase, GGDEF domain FDP11_02085 PF00465 Iron-containing alcohol dehydrogenase FDP11_02090 PF00596 Class II Aldolase and Adducin N-terminal domain FDP11_02095 PF06134 L-rhamnose isomerase (RhaA) FDP11_02100 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FDP11_02105 PF05336 L-rhamnose mutarotase FDP11_02115 PF02311 AraC-like ligand binding domain FDP11_02115 PF12833 Helix-turn-helix domain FDP11_02140 PF13737 Transposase DDE domain FDP11_02155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDP11_02155 PF00672 HAMP domain FDP11_02155 PF02743 Cache domain FDP11_02165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDP11_02170 PF00563 EAL domain FDP11_02170 PF12792 CSS motif domain associated with EAL FDP11_02180 PF00486 Transcriptional regulatory protein, C terminal FDP11_02180 PF18500 CadC C-terminal domain 1 FDP11_02225 PF13181 Tetratricopeptide repeat FDP11_02225 PF17128 Domain of unknown function (DUF5107) FDP11_02230 PF00083 Sugar (and other) transporter FDP11_02240 PF00480 ROK family FDP11_02245 PF00149 Calcineurin-like phosphoesterase FDP11_02245 PF02872 5'-nucleotidase, C-terminal domain FDP11_02265 PF14338 Mrr N-terminal domain FDP11_02265 PF04471 Restriction endonuclease FDP11_02270 PF00271 Helicase conserved C-terminal domain FDP11_02270 PF08463 EcoEI R protein C-terminal FDP11_02270 PF04851 Type III restriction enzyme, res subunit FDP11_02270 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) FDP11_02275 PF01420 Type I restriction modification DNA specificity domain FDP11_02290 PF12161 HsdM N-terminal domain FDP11_02290 PF02384 N-6 DNA Methylase FDP11_02310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_02310 PF03466 LysR substrate binding domain FDP11_02320 PF09456 RcsC Alpha-Beta-Loop (ABL) FDP11_02320 PF00072 Response regulator receiver domain FDP11_02320 PF00512 His Kinase A (phospho-acceptor) domain FDP11_02320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_02325 PF00563 EAL domain FDP11_02325 PF00990 Diguanylate cyclase, GGDEF domain FDP11_02325 PF13188 PAS domain FDP11_02325 PF03707 Bacterial signalling protein N terminal repeat FDP11_02330 PF00196 Bacterial regulatory proteins, luxR family FDP11_02330 PF00072 Response regulator receiver domain FDP11_02335 PF00990 Diguanylate cyclase, GGDEF domain FDP11_02345 PF00072 Response regulator receiver domain FDP11_02345 PF00196 Bacterial regulatory proteins, luxR family FDP11_02370 PF00072 Response regulator receiver domain FDP11_02370 PF01584 CheW-like domain FDP11_02390 PF00892 EamA-like transporter family FDP11_02405 PF01569 PAP2 superfamily FDP11_02415 PF03606 C4-dicarboxylate anaerobic carrier FDP11_02425 PF00034 Cytochrome c FDP11_02430 PF01212 Beta-eliminating lyase FDP11_02440 PF12592 Protein of unknown function (DUF3763) FDP11_02440 PF17868 AAA lid domain FDP11_02440 PF07728 AAA domain (dynein-related subfamily) FDP11_02445 PF05762 VWA domain containing CoxE-like protein FDP11_02465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_02465 PF03466 LysR substrate binding domain FDP11_02470 PF01565 FAD binding domain FDP11_02470 PF09330 D-lactate dehydrogenase, membrane binding FDP11_02490 PF00842 Alanine racemase, C-terminal domain FDP11_02490 PF01168 Alanine racemase, N-terminal domain FDP11_02495 PF00672 HAMP domain FDP11_02495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDP11_02510 PF00128 Alpha amylase, catalytic domain FDP11_02510 PF09154 Domain of unknown function (DUF1939) FDP11_02535 PF13462 Thioredoxin FDP11_02535 PF06965 Na+/H+ antiporter 1 FDP11_02580 PF01272 Transcription elongation factor, GreA/GreB, C-term FDP11_02580 PF14760 Rnk N-terminus FDP11_02585 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FDP11_02585 PF18267 Rubredoxin NAD+ reductase C-terminal domain FDP11_02585 PF04324 BFD-like [2Fe-2S] binding domain FDP11_02585 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FDP11_02585 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDP11_02590 PF13806 Rieske-like [2Fe-2S] domain FDP11_02595 PF01226 Formate/nitrite transporter FDP11_02600 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FDP11_02600 PF14824 Sirohaem biosynthesis protein central FDP11_02600 PF10414 Sirohaem synthase dimerisation region FDP11_02615 PF03605 Anaerobic c4-dicarboxylate membrane transporter FDP11_02630 PF07715 TonB-dependent Receptor Plug Domain FDP11_02630 PF00593 TonB dependent receptor FDP11_02645 PF11756 Nitrous oxide-stimulated promoter FDP11_02660 PF07690 Major Facilitator Superfamily FDP11_02665 PF00085 Thioredoxin FDP11_02670 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FDP11_02670 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FDP11_02690 PF01238 Phosphomannose isomerase type I FDP11_02695 PF07690 Major Facilitator Superfamily FDP11_02700 PF05231 MASE1 FDP11_02700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_02700 PF07730 Histidine kinase FDP11_02705 PF00072 Response regulator receiver domain FDP11_02705 PF00196 Bacterial regulatory proteins, luxR family FDP11_02710 PF07690 Major Facilitator Superfamily FDP11_02715 PF02634 FdhD/NarQ family FDP11_02720 PF03466 LysR substrate binding domain FDP11_02720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_02730 PF00384 Molybdopterin oxidoreductase FDP11_02735 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDP11_02735 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FDP11_02750 PF04143 Sulphur transport FDP11_02760 PF00873 AcrB/AcrD/AcrF family FDP11_02765 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDP11_02775 PF13597 Anaerobic ribonucleoside-triphosphate reductase FDP11_02775 PF03477 ATP cone domain FDP11_02815 PF00004 ATPase family associated with various cellular activities (AAA) FDP11_02815 PF17862 AAA+ lid domain FDP11_02815 PF01434 Peptidase family M41 FDP11_02895 PF01554 MatE FDP11_02905 PF12833 Helix-turn-helix domain FDP11_02910 PF00155 Aminotransferase class I and II FDP11_02915 PF18030 RimK PreATP-grasp domain FDP11_02915 PF08443 RimK-like ATP-grasp domain FDP11_02925 PF04076 Bacterial OB fold (BOF) protein FDP11_02930 PF07685 CobB/CobQ-like glutamine amidotransferase domain FDP11_02940 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_02945 PF03459 TOBE domain FDP11_02945 PF00005 ABC transporter FDP11_02955 PF00990 Diguanylate cyclase, GGDEF domain FDP11_02955 PF01590 GAF domain FDP11_02955 PF00360 Phytochrome region FDP11_02955 PF00563 EAL domain FDP11_02965 PF00072 Response regulator receiver domain FDP11_02965 PF00990 Diguanylate cyclase, GGDEF domain FDP11_02980 PF01262 Alanine dehydrogenase/PNT, C-terminal domain FDP11_02980 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch FDP11_02980 PF05222 Alanine dehydrogenase/PNT, N-terminal domain FDP11_02985 PF02233 NAD(P) transhydrogenase beta subunit FDP11_02995 PF00486 Transcriptional regulatory protein, C terminal FDP11_02995 PF00072 Response regulator receiver domain FDP11_03010 PF03701 Uncharacterised protein family (UPF0181) FDP11_03015 PF00582 Universal stress protein family FDP11_03025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_03025 PF03466 LysR substrate binding domain FDP11_03045 PF01253 Translation initiation factor SUI1 FDP11_03055 PF07478 D-ala D-ala ligase C-terminus FDP11_03055 PF01820 D-ala D-ala ligase N-terminus FDP11_03065 PF13380 CoA binding domain FDP11_03065 PF13607 Succinyl-CoA ligase like flavodoxin domain FDP11_03065 PF00583 Acetyltransferase (GNAT) family FDP11_03070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_03070 PF03466 LysR substrate binding domain FDP11_03075 PF04886 PT repeat FDP11_03075 PF00593 TonB dependent receptor FDP11_03075 PF07715 TonB-dependent Receptor Plug Domain FDP11_03085 PF16363 GDP-mannose 4,6 dehydratase FDP11_03090 PF00563 EAL domain FDP11_03090 PF00990 Diguanylate cyclase, GGDEF domain FDP11_03090 PF05231 MASE1 FDP11_03090 PF08447 PAS fold FDP11_03090 PF13426 PAS domain FDP11_03090 PF08448 PAS fold FDP11_03095 PF03746 LamB/YcsF family FDP11_03100 PF02682 Carboxyltransferase domain, subdomain C and D FDP11_03105 PF02626 Carboxyltransferase domain, subdomain A and B FDP11_03120 PF00005 ABC transporter FDP11_03125 PF13472 GDSL-like Lipase/Acylhydrolase family FDP11_03130 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase FDP11_03130 PF07055 Enoyl reductase FAD binding domain FDP11_03130 PF12241 Trans-2-enoyl-CoA reductase catalytic region FDP11_03135 PF03707 Bacterial signalling protein N terminal repeat FDP11_03135 PF13188 PAS domain FDP11_03135 PF00990 Diguanylate cyclase, GGDEF domain FDP11_03135 PF00563 EAL domain FDP11_03145 PF01556 DnaJ C terminal domain FDP11_03145 PF00226 DnaJ domain FDP11_03145 PF00684 DnaJ central domain FDP11_03170 PF12793 Sugar transport-related sRNA regulator N-term FDP11_03170 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FDP11_03180 PF03061 Thioesterase superfamily FDP11_03195 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) FDP11_03200 PF12262 Bacterial virulence factor lipase N-terminal FDP11_03215 PF03741 Integral membrane protein TerC family FDP11_03220 PF02872 5'-nucleotidase, C-terminal domain FDP11_03220 PF00149 Calcineurin-like phosphoesterase FDP11_03225 PF11398 Protein of unknown function (DUF2813) FDP11_03230 PF06496 Protein of unknown function (DUF1097) FDP11_03235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_03235 PF03466 LysR substrate binding domain FDP11_03240 PF01226 Formate/nitrite transporter FDP11_03245 PF04264 YceI-like domain FDP11_03250 PF01292 Prokaryotic cytochrome b561 FDP11_03265 PF12792 CSS motif domain associated with EAL FDP11_03265 PF00563 EAL domain FDP11_03270 PF00271 Helicase conserved C-terminal domain FDP11_03270 PF00270 DEAD/DEAH box helicase FDP11_03275 PF04336 Acyl carrier protein phosphodiesterase FDP11_03285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDP11_03295 PF13419 Haloacid dehalogenase-like hydrolase FDP11_03305 PF11849 Domain of unknown function (DUF3369) FDP11_03325 PF00294 pfkB family carbohydrate kinase FDP11_03330 PF01268 Formate--tetrahydrofolate ligase FDP11_03335 PF00483 Nucleotidyl transferase FDP11_03340 PF00704 Glycosyl hydrolases family 18 FDP11_03340 PF06483 Chitinase C FDP11_03350 PF06719 AraC-type transcriptional regulator N-terminus FDP11_03350 PF12833 Helix-turn-helix domain FDP11_03355 PF00465 Iron-containing alcohol dehydrogenase FDP11_03365 PF00072 Response regulator receiver domain FDP11_03365 PF02954 Bacterial regulatory protein, Fis family FDP11_03365 PF14532 Sigma-54 interaction domain FDP11_03370 PF00512 His Kinase A (phospho-acceptor) domain FDP11_03370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_03370 PF00672 HAMP domain FDP11_03380 PF07690 Major Facilitator Superfamily FDP11_03385 PF02887 Pyruvate kinase, alpha/beta domain FDP11_03385 PF00224 Pyruvate kinase, barrel domain FDP11_03390 PF00005 ABC transporter FDP11_03395 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_03400 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDP11_03405 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_03410 PF00563 EAL domain FDP11_03410 PF01590 GAF domain FDP11_03410 PF00990 Diguanylate cyclase, GGDEF domain FDP11_03410 PF00989 PAS fold FDP11_03430 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family FDP11_03430 PF00356 Bacterial regulatory proteins, lacI family FDP11_03435 PF00381 PTS HPr component phosphorylation site FDP11_03435 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FDP11_03440 PF00294 pfkB family carbohydrate kinase FDP11_03445 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FDP11_03445 PF02378 Phosphotransferase system, EIIC FDP11_03455 PF00873 AcrB/AcrD/AcrF family FDP11_03475 PF08669 Glycine cleavage T-protein C-terminal barrel domain FDP11_03475 PF01571 Aminomethyltransferase folate-binding domain FDP11_03485 PF00464 Serine hydroxymethyltransferase FDP11_03490 PF01597 Glycine cleavage H-protein FDP11_03495 PF02347 Glycine cleavage system P-protein FDP11_03545 PF01039 Carboxyl transferase domain FDP11_03545 PF17848 Acetyl-coA carboxylase zinc finger domain FDP11_03550 PF03466 LysR substrate binding domain FDP11_03550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_03555 PF11490 DNA polymerase III polC-type N-terminus II FDP11_03555 PF02811 PHP domain FDP11_03555 PF07733 Bacterial DNA polymerase III alpha NTPase domain FDP11_03555 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FDP11_03555 PF00929 Exonuclease FDP11_03555 PF14579 Helix-hairpin-helix motif FDP11_03565 PF00005 ABC transporter FDP11_03565 PF00664 ABC transporter transmembrane region FDP11_03585 PF02253 Phospholipase A1 FDP11_03600 PF00376 MerR family regulatory protein FDP11_03600 PF09278 MerR, DNA binding FDP11_03605 PF01327 Polypeptide deformylase FDP11_03645 PF00571 CBS domain FDP11_03645 PF03448 MgtE intracellular N domain FDP11_03645 PF01769 Divalent cation transporter FDP11_03665 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FDP11_03670 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FDP11_03680 PF01757 Acyltransferase family FDP11_03690 PF09722 Protein of unknown function (DUF2384) FDP11_03695 PF00141 Peroxidase FDP11_03705 PF01645 Conserved region in glutamate synthase FDP11_03705 PF13187 4Fe-4S dicluster domain FDP11_03715 PF12431 Transcriptional regulator FDP11_03715 PF00072 Response regulator receiver domain FDP11_03720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_03720 PF00989 PAS fold FDP11_03720 PF17203 Single cache domain 3 FDP11_03720 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain FDP11_03725 PF00939 Sodium:sulfate symporter transmembrane region FDP11_03730 PF00171 Aldehyde dehydrogenase family FDP11_03750 PF00892 EamA-like transporter family FDP11_03755 PF00893 Small Multidrug Resistance protein FDP11_03760 PF04151 Bacterial pre-peptidase C-terminal domain FDP11_03760 PF02868 Thermolysin metallopeptidase, alpha-helical domain FDP11_03760 PF01447 Thermolysin metallopeptidase, catalytic domain FDP11_03760 PF03413 Peptidase propeptide and YPEB domain FDP11_03760 PF07504 Fungalysin/Thermolysin Propeptide Motif FDP11_03775 PF00814 Glycoprotease family FDP11_03775 PF00583 Acetyltransferase (GNAT) family FDP11_03785 PF03606 C4-dicarboxylate anaerobic carrier FDP11_03790 PF04011 LemA family FDP11_03795 PF01435 Peptidase family M48 FDP11_03815 PF08774 VRR-NUC domain FDP11_03815 PF18081 Fanconi anemia-associated nuclease SAP domain FDP11_03825 PF04055 Radical SAM superfamily FDP11_03825 PF13186 Iron-sulfur cluster-binding domain FDP11_03845 PF04076 Bacterial OB fold (BOF) protein FDP11_03850 PF00781 Diacylglycerol kinase catalytic domain FDP11_03855 PF03466 LysR substrate binding domain FDP11_03855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_03860 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FDP11_03875 PF00092 von Willebrand factor type A domain FDP11_03890 PF07726 ATPase family associated with various cellular activities (AAA) FDP11_03890 PF17863 AAA lid domain FDP11_03895 PF13186 Iron-sulfur cluster-binding domain FDP11_03895 PF04055 Radical SAM superfamily FDP11_03900 PF00884 Sulfatase FDP11_03905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_03905 PF03466 LysR substrate binding domain FDP11_03915 PF00884 Sulfatase FDP11_03920 PF16385 Domain of unknown function FDP11_03920 PF00884 Sulfatase FDP11_03925 PF00072 Response regulator receiver domain FDP11_03925 PF00486 Transcriptional regulatory protein, C terminal FDP11_03940 PF00072 Response regulator receiver domain FDP11_03940 PF01627 Hpt domain FDP11_03940 PF00512 His Kinase A (phospho-acceptor) domain FDP11_03940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_03940 PF00672 HAMP domain FDP11_03945 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family FDP11_03950 PF02142 MGS-like domain FDP11_03955 PF00580 UvrD/REP helicase N-terminal domain FDP11_03955 PF13361 UvrD-like helicase C-terminal domain FDP11_03955 PF12462 DNA helicase IV / RNA helicase N terminal FDP11_03960 PF12805 FUSC-like inner membrane protein yccS FDP11_03995 PF07715 TonB-dependent Receptor Plug Domain FDP11_03995 PF00593 TonB dependent receptor FDP11_04010 PF13411 MerR HTH family regulatory protein FDP11_04015 PF00005 ABC transporter FDP11_04020 PF01032 FecCD transport family FDP11_04025 PF01032 FecCD transport family FDP11_04030 PF01497 Periplasmic binding protein FDP11_04040 PF01048 Phosphorylase superfamily FDP11_04045 PF04973 Nicotinamide mononucleotide transporter FDP11_04055 PF00356 Bacterial regulatory proteins, lacI family FDP11_04060 PF00294 pfkB family carbohydrate kinase FDP11_04065 PF13407 Periplasmic binding protein domain FDP11_04070 PF02653 Branched-chain amino acid transport system / permease component FDP11_04075 PF00005 ABC transporter FDP11_04080 PF05025 RbsD / FucU transport protein family FDP11_04085 PF00990 Diguanylate cyclase, GGDEF domain FDP11_04085 PF00563 EAL domain FDP11_04090 PF01048 Phosphorylase superfamily FDP11_04135 PF04116 Fatty acid hydroxylase superfamily FDP11_04150 PF09308 LuxQ, periplasmic FDP11_04150 PF00512 His Kinase A (phospho-acceptor) domain FDP11_04150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_04150 PF00072 Response regulator receiver domain FDP11_04155 PF00034 Cytochrome c FDP11_04155 PF03150 Di-haem cytochrome c peroxidase FDP11_04170 PF00563 EAL domain FDP11_04170 PF00990 Diguanylate cyclase, GGDEF domain FDP11_04170 PF03707 Bacterial signalling protein N terminal repeat FDP11_04170 PF13188 PAS domain FDP11_04185 PF01145 SPFH domain / Band 7 family FDP11_04185 PF16200 C-terminal region of band_7 FDP11_04195 PF00881 Nitroreductase family FDP11_04200 PF00571 CBS domain FDP11_04200 PF00005 ABC transporter FDP11_04205 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_04210 PF04069 Substrate binding domain of ABC-type glycine betaine transport system FDP11_04215 PF05199 GMC oxidoreductase FDP11_04215 PF00732 GMC oxidoreductase FDP11_04220 PF00171 Aldehyde dehydrogenase family FDP11_04225 PF00440 Bacterial regulatory proteins, tetR family FDP11_04225 PF13977 BetI-type transcriptional repressor, C-terminal FDP11_04230 PF00990 Diguanylate cyclase, GGDEF domain FDP11_04230 PF17151 Periplasmic sensor domain FDP11_04245 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FDP11_04245 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FDP11_04255 PF00378 Enoyl-CoA hydratase/isomerase FDP11_04260 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDP11_04260 PF02770 Acyl-CoA dehydrogenase, middle domain FDP11_04260 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDP11_04265 PF00171 Aldehyde dehydrogenase family FDP11_04270 PF00108 Thiolase, N-terminal domain FDP11_04270 PF02803 Thiolase, C-terminal domain FDP11_04275 PF00376 MerR family regulatory protein FDP11_04275 PF09278 MerR, DNA binding FDP11_04280 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDP11_04280 PF02770 Acyl-CoA dehydrogenase, middle domain FDP11_04280 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDP11_04285 PF01039 Carboxyl transferase domain FDP11_04290 PF00378 Enoyl-CoA hydratase/isomerase FDP11_04295 PF02785 Biotin carboxylase C-terminal domain FDP11_04295 PF00364 Biotin-requiring enzyme FDP11_04295 PF00289 Biotin carboxylase, N-terminal domain FDP11_04295 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FDP11_04300 PF00682 HMGL-like FDP11_04305 PF00512 His Kinase A (phospho-acceptor) domain FDP11_04305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_04305 PF00072 Response regulator receiver domain FDP11_04305 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FDP11_04305 PF01627 Hpt domain FDP11_04305 PF00672 HAMP domain FDP11_04320 PF12794 Mechanosensitive ion channel inner membrane domain 1 FDP11_04320 PF00924 Mechanosensitive ion channel FDP11_04320 PF12795 Mechanosensitive ion channel porin domain FDP11_04330 PF12464 Maltose acetyltransferase FDP11_04330 PF14602 Hexapeptide repeat of succinyl-transferase FDP11_04335 PF00155 Aminotransferase class I and II FDP11_04335 PF00392 Bacterial regulatory proteins, gntR family FDP11_04340 PF01654 Cytochrome bd terminal oxidase subunit I FDP11_04345 PF02322 Cytochrome bd terminal oxidase subunit II FDP11_04355 PF02567 Phenazine biosynthesis-like protein FDP11_04360 PF02627 Carboxymuconolactone decarboxylase family FDP11_04365 PF13411 MerR HTH family regulatory protein FDP11_04375 PF00034 Cytochrome c FDP11_04385 PF05724 Thiopurine S-methyltransferase (TPMT) FDP11_04390 PF00501 AMP-binding enzyme FDP11_04390 PF14535 AMP-binding enzyme C-terminal domain FDP11_04395 PF00005 ABC transporter FDP11_04420 PF00005 ABC transporter FDP11_04420 PF12399 Branched-chain amino acid ATP-binding cassette transporter FDP11_04435 PF01012 Electron transfer flavoprotein domain FDP11_04440 PF00766 Electron transfer flavoprotein FAD-binding domain FDP11_04440 PF01012 Electron transfer flavoprotein domain FDP11_04445 PF00501 AMP-binding enzyme FDP11_04445 PF13193 AMP-binding enzyme C-terminal domain FDP11_04450 PF00478 IMP dehydrogenase / GMP reductase domain FDP11_04455 PF03853 YjeF-related protein N-terminus FDP11_04455 PF01256 Carbohydrate kinase FDP11_04465 PF00072 Response regulator receiver domain FDP11_04470 PF00248 Aldo/keto reductase family FDP11_04485 PF00654 Voltage gated chloride channel FDP11_04495 PF01566 Natural resistance-associated macrophage protein FDP11_04500 PF01227 GTP cyclohydrolase I FDP11_04505 PF03453 MoeA N-terminal region (domain I and II) FDP11_04505 PF03454 MoeA C-terminal region (domain IV) FDP11_04505 PF00994 Probable molybdopterin binding domain FDP11_04510 PF00899 ThiF family FDP11_04530 PF00581 Rhodanese-like domain FDP11_04535 PF00563 EAL domain FDP11_04535 PF03707 Bacterial signalling protein N terminal repeat FDP11_04535 PF00990 Diguanylate cyclase, GGDEF domain FDP11_04540 PF00704 Glycosyl hydrolases family 18 FDP11_04540 PF08329 Chitinase A, N-terminal domain FDP11_04560 PF00923 Transaldolase/Fructose-6-phosphate aldolase FDP11_04565 PF00456 Transketolase, thiamine diphosphate binding domain FDP11_04565 PF02779 Transketolase, pyrimidine binding domain FDP11_04565 PF02780 Transketolase, C-terminal domain FDP11_04570 PF08447 PAS fold FDP11_04570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDP11_04580 PF07690 Major Facilitator Superfamily FDP11_04585 PF00793 DAHP synthetase I family FDP11_04595 PF00691 OmpA family FDP11_04595 PF01389 OmpA-like transmembrane domain FDP11_04600 PF13419 Haloacid dehalogenase-like hydrolase FDP11_04605 PF00472 RF-1 domain FDP11_04610 PF12729 Four helix bundle sensory module for signal transduction FDP11_04610 PF00672 HAMP domain FDP11_04610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDP11_04615 PF00873 AcrB/AcrD/AcrF family FDP11_04620 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDP11_04625 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FDP11_04630 PF07687 Peptidase dimerisation domain FDP11_04630 PF01546 Peptidase family M20/M25/M40 FDP11_04645 PF00196 Bacterial regulatory proteins, luxR family FDP11_04645 PF00072 Response regulator receiver domain FDP11_04650 PF00672 HAMP domain FDP11_04650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_04650 PF07730 Histidine kinase FDP11_04650 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term FDP11_04655 PF13187 4Fe-4S dicluster domain FDP11_04655 PF12838 4Fe-4S dicluster domain FDP11_04665 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FDP11_04665 PF00384 Molybdopterin oxidoreductase FDP11_04665 PF01568 Molydopterin dinucleotide binding domain FDP11_04670 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) FDP11_04675 PF03264 NapC/NirT cytochrome c family, N-terminal region FDP11_04685 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus FDP11_04685 PF00561 alpha/beta hydrolase fold FDP11_04695 PF02803 Thiolase, C-terminal domain FDP11_04695 PF00108 Thiolase, N-terminal domain FDP11_04700 PF00106 short chain dehydrogenase FDP11_04715 PF07549 SecD/SecF GG Motif FDP11_04715 PF02355 Protein export membrane protein FDP11_04720 PF07549 SecD/SecF GG Motif FDP11_04720 PF13721 SecD export protein N-terminal TM region FDP11_04720 PF02355 Protein export membrane protein FDP11_04750 PF01037 Lrp/AsnC ligand binding domain FDP11_04770 PF00529 HlyD membrane-fusion protein of T1SS FDP11_04770 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDP11_04780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_04780 PF00512 His Kinase A (phospho-acceptor) domain FDP11_04780 PF09308 LuxQ, periplasmic FDP11_04780 PF00072 Response regulator receiver domain FDP11_04785 PF13407 Periplasmic binding protein domain FDP11_04790 PF01541 GIY-YIG catalytic domain FDP11_04795 PF04337 Protein of unknown function, DUF480 FDP11_04810 PF04363 Protein of unknown function (DUF496) FDP11_04815 PF01554 MatE FDP11_04820 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FDP11_04825 PF01627 Hpt domain FDP11_04825 PF00512 His Kinase A (phospho-acceptor) domain FDP11_04825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_04825 PF00072 Response regulator receiver domain FDP11_04825 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FDP11_04825 PF00672 HAMP domain FDP11_04830 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FDP11_04830 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FDP11_04845 PF03466 LysR substrate binding domain FDP11_04845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_04850 PF13404 AsnC-type helix-turn-helix domain FDP11_04850 PF01037 Lrp/AsnC ligand binding domain FDP11_04860 PF13520 Amino acid permease FDP11_04865 PF00155 Aminotransferase class I and II FDP11_04865 PF00392 Bacterial regulatory proteins, gntR family FDP11_04875 PF03109 ABC1 family FDP11_04880 PF00571 CBS domain FDP11_04880 PF01769 Divalent cation transporter FDP11_04880 PF03448 MgtE intracellular N domain FDP11_04890 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin FDP11_04895 PF07969 Amidohydrolase family FDP11_04905 PF01966 HD domain FDP11_04920 PF07690 Major Facilitator Superfamily FDP11_04930 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase FDP11_04935 PF00255 Glutathione peroxidase FDP11_04950 PF01323 DSBA-like thioredoxin domain FDP11_04970 PF00106 short chain dehydrogenase FDP11_04975 PF00072 Response regulator receiver domain FDP11_04975 PF00486 Transcriptional regulatory protein, C terminal FDP11_04980 PF00512 His Kinase A (phospho-acceptor) domain FDP11_04980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_04980 PF00672 HAMP domain FDP11_04990 PF01219 Prokaryotic diacylglycerol kinase FDP11_04995 PF00884 Sulfatase FDP11_04995 PF08019 Phosphoethanolamine transferase EptA/EptB FDP11_05000 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FDP11_05010 PF07690 Major Facilitator Superfamily FDP11_05025 PF01047 MarR family FDP11_05035 PF01734 Patatin-like phospholipase FDP11_05040 PF05726 Pirin C-terminal cupin domain FDP11_05040 PF02678 Pirin FDP11_05045 PF00313 'Cold-shock' DNA-binding domain FDP11_05065 PF00962 Adenosine/AMP deaminase FDP11_05070 PF08534 Redoxin FDP11_05070 PF00462 Glutaredoxin FDP11_05090 PF00768 D-alanyl-D-alanine carboxypeptidase FDP11_05090 PF07943 Penicillin-binding protein 5, C-terminal domain FDP11_05105 PF02798 Glutathione S-transferase, N-terminal domain FDP11_05110 PF00440 Bacterial regulatory proteins, tetR family FDP11_05110 PF02909 Tetracyclin repressor-like, C-terminal domain FDP11_05115 PF01872 RibD C-terminal domain FDP11_05175 PF12833 Helix-turn-helix domain FDP11_05175 PF01497 Periplasmic binding protein FDP11_05180 PF00155 Aminotransferase class I and II FDP11_05210 PF00271 Helicase conserved C-terminal domain FDP11_05210 PF00270 DEAD/DEAH box helicase FDP11_05220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_05220 PF03466 LysR substrate binding domain FDP11_05225 PF03466 LysR substrate binding domain FDP11_05225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_05235 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FDP11_05240 PF08240 Alcohol dehydrogenase GroES-like domain FDP11_05240 PF00107 Zinc-binding dehydrogenase FDP11_05255 PF12833 Helix-turn-helix domain FDP11_05255 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term FDP11_05265 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) FDP11_05280 PF03466 LysR substrate binding domain FDP11_05280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_05290 PF00710 Asparaginase, N-terminal FDP11_05290 PF17763 Glutaminase/Asparaginase C-terminal domain FDP11_05295 PF03618 Kinase/pyrophosphorylase FDP11_05300 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain FDP11_05300 PF00391 PEP-utilising enzyme, mobile domain FDP11_05300 PF02896 PEP-utilising enzyme, TIM barrel domain FDP11_05320 PF00579 tRNA synthetases class I (W and Y) FDP11_05325 PF13416 Bacterial extracellular solute-binding protein FDP11_05335 PF03466 LysR substrate binding domain FDP11_05335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_05340 PF13533 Biotin-lipoyl like FDP11_05345 PF00873 AcrB/AcrD/AcrF family FDP11_05360 PF07694 5TMR of 5TMR-LYT FDP11_05360 PF00990 Diguanylate cyclase, GGDEF domain FDP11_05370 PF00196 Bacterial regulatory proteins, luxR family FDP11_05375 PF02836 Glycosyl hydrolases family 2, TIM barrel domain FDP11_05375 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 FDP11_05375 PF00703 Glycosyl hydrolases family 2 FDP11_05375 PF02837 Glycosyl hydrolases family 2, sugar binding domain FDP11_05380 PF02028 BCCT, betaine/carnitine/choline family transporter FDP11_05385 PF00392 Bacterial regulatory proteins, gntR family FDP11_05385 PF07702 UTRA domain FDP11_05410 PF00005 ABC transporter FDP11_05410 PF08402 TOBE domain FDP11_05455 PF00873 AcrB/AcrD/AcrF family FDP11_05460 PF13533 Biotin-lipoyl like FDP11_05470 PF13091 PLD-like domain FDP11_05500 PF09278 MerR, DNA binding FDP11_05500 PF00376 MerR family regulatory protein FDP11_05520 PF03466 LysR substrate binding domain FDP11_05520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_05530 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FDP11_05530 PF13378 Enolase C-terminal domain-like FDP11_05540 PF03144 Elongation factor Tu domain 2 FDP11_05540 PF03764 Elongation factor G, domain IV FDP11_05540 PF14492 Elongation Factor G, domain II FDP11_05540 PF00679 Elongation factor G C-terminus FDP11_05540 PF00009 Elongation factor Tu GTP binding domain FDP11_05565 PF02001 Protein of unknown function DUF134 FDP11_05575 PF17185 NlpE C-terminal OB domain FDP11_05575 PF04170 NlpE N-terminal domain FDP11_05585 PF06629 MltA-interacting protein MipA FDP11_05595 PF00691 OmpA family FDP11_05595 PF01389 OmpA-like transmembrane domain FDP11_05600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_05600 PF03466 LysR substrate binding domain FDP11_05630 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family FDP11_05630 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain FDP11_05640 PF00857 Isochorismatase family FDP11_05650 PF00199 Catalase FDP11_05650 PF06628 Catalase-related immune-responsive FDP11_05660 PF00455 DeoR C terminal sensor domain FDP11_05660 PF08220 DeoR-like helix-turn-helix domain FDP11_05665 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FDP11_05670 PF01625 Peptide methionine sulfoxide reductase FDP11_05670 PF01641 SelR domain FDP11_05680 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FDP11_05680 PF02378 Phosphotransferase system, EIIC FDP11_05680 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FDP11_05690 PF07971 Glycosyl hydrolase family 92 FDP11_05690 PF17678 Glycosyl hydrolase family 92 N-terminal domain FDP11_05695 PF17678 Glycosyl hydrolase family 92 N-terminal domain FDP11_05695 PF07971 Glycosyl hydrolase family 92 FDP11_05705 PF07971 Glycosyl hydrolase family 92 FDP11_05705 PF17678 Glycosyl hydrolase family 92 N-terminal domain FDP11_05710 PF07971 Glycosyl hydrolase family 92 FDP11_05710 PF17678 Glycosyl hydrolase family 92 N-terminal domain FDP11_05715 PF03060 Nitronate monooxygenase FDP11_05720 PF00149 Calcineurin-like phosphoesterase FDP11_05720 PF02872 5'-nucleotidase, C-terminal domain FDP11_05730 PF00440 Bacterial regulatory proteins, tetR family FDP11_05730 PF08359 YsiA-like protein, C-terminal region FDP11_05745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_05745 PF03466 LysR substrate binding domain FDP11_05750 PF01810 LysE type translocator FDP11_05765 PF00118 TCP-1/cpn60 chaperonin family FDP11_05770 PF00166 Chaperonin 10 Kd subunit FDP11_05780 PF00581 Rhodanese-like domain FDP11_05800 PF01070 FMN-dependent dehydrogenase FDP11_05830 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FDP11_05830 PF00460 Flagella basal body rod protein FDP11_05835 PF10135 Rod binding protein FDP11_05835 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase FDP11_05840 PF02119 Flagellar P-ring protein FDP11_05845 PF02107 Flagellar L-ring protein FDP11_05850 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FDP11_05850 PF00460 Flagella basal body rod protein FDP11_05855 PF00460 Flagella basal body rod protein FDP11_05855 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FDP11_05860 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FDP11_05860 PF00460 Flagella basal body rod protein FDP11_05860 PF07559 Flagellar basal body protein FlaE FDP11_05865 PF13861 FlgD Tudor-like domain FDP11_05865 PF03963 Flagellar hook capping protein - N-terminal region FDP11_05865 PF13860 FlgD Ig-like domain FDP11_05870 PF00460 Flagella basal body rod protein FDP11_05870 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FDP11_05875 PF00460 Flagella basal body rod protein FDP11_05895 PF01464 Transglycosylase SLT domain FDP11_05900 PF08264 Anticodon-binding domain of tRNA FDP11_05900 PF00133 tRNA synthetases class I (I, L, M and V) FDP11_05920 PF03315 Serine dehydratase beta chain FDP11_05920 PF03313 Serine dehydratase alpha chain FDP11_05925 PF00854 POT family FDP11_05935 PF03466 LysR substrate binding domain FDP11_05935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_05945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_05945 PF03466 LysR substrate binding domain FDP11_05950 PF01389 OmpA-like transmembrane domain FDP11_05950 PF00691 OmpA family FDP11_05960 PF18027 Cytosolic carboxypeptidase N-terminal domain FDP11_05960 PF00246 Zinc carboxypeptidase FDP11_05965 PF01266 FAD dependent oxidoreductase FDP11_05990 PF00392 Bacterial regulatory proteins, gntR family FDP11_05990 PF07702 UTRA domain FDP11_05995 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_06000 PF00005 ABC transporter FDP11_06015 PF00266 Aminotransferase class-V FDP11_06025 PF13419 Haloacid dehalogenase-like hydrolase FDP11_06030 PF00356 Bacterial regulatory proteins, lacI family FDP11_06035 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FDP11_06045 PF03611 PTS system sugar-specific permease component FDP11_06055 PF00082 Subtilase family FDP11_06055 PF05922 Peptidase inhibitor I9 FDP11_06060 PF00657 GDSL-like Lipase/Acylhydrolase FDP11_06065 PF02321 Outer membrane efflux protein FDP11_06070 PF02687 FtsX-like permease family FDP11_06070 PF12704 MacB-like periplasmic core domain FDP11_06070 PF00005 ABC transporter FDP11_06075 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDP11_06080 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) FDP11_06085 PF00194 Eukaryotic-type carbonic anhydrase FDP11_06090 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) FDP11_06105 PF13419 Haloacid dehalogenase-like hydrolase FDP11_06110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_06110 PF03466 LysR substrate binding domain FDP11_06145 PF14602 Hexapeptide repeat of succinyl-transferase FDP11_06145 PF12464 Maltose acetyltransferase FDP11_06150 PF02566 OsmC-like protein FDP11_06155 PF01625 Peptide methionine sulfoxide reductase FDP11_06155 PF01641 SelR domain FDP11_06170 PF04244 Deoxyribodipyrimidine photo-lyase-related protein FDP11_06175 PF03441 FAD binding domain of DNA photolyase FDP11_06175 PF00875 DNA photolyase FDP11_06180 PF00990 Diguanylate cyclase, GGDEF domain FDP11_06195 PF12729 Four helix bundle sensory module for signal transduction FDP11_06195 PF00672 HAMP domain FDP11_06195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDP11_06200 PF00990 Diguanylate cyclase, GGDEF domain FDP11_06200 PF05230 MASE2 domain FDP11_06205 PF13532 2OG-Fe(II) oxygenase superfamily FDP11_06215 PF07670 Nucleoside recognition FDP11_06215 PF07662 Na+ dependent nucleoside transporter C-terminus FDP11_06215 PF01773 Na+ dependent nucleoside transporter N-terminus FDP11_06235 PF01212 Beta-eliminating lyase FDP11_06245 PF01266 FAD dependent oxidoreductase FDP11_06270 PF05525 Branched-chain amino acid transport protein FDP11_06275 PF00990 Diguanylate cyclase, GGDEF domain FDP11_06275 PF05230 MASE2 domain FDP11_06280 PF02954 Bacterial regulatory protein, Fis family FDP11_06280 PF00072 Response regulator receiver domain FDP11_06280 PF00158 Sigma-54 interaction domain FDP11_06285 PF02743 Cache domain FDP11_06285 PF00512 His Kinase A (phospho-acceptor) domain FDP11_06285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_06295 PF00232 Glycosyl hydrolase family 1 FDP11_06320 PF03466 LysR substrate binding domain FDP11_06320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_06330 PF08443 RimK-like ATP-grasp domain FDP11_06330 PF18030 RimK PreATP-grasp domain FDP11_06335 PF18030 RimK PreATP-grasp domain FDP11_06335 PF08443 RimK-like ATP-grasp domain FDP11_06340 PF00753 Metallo-beta-lactamase superfamily FDP11_06345 PF17810 Arginine decarboxylase helical bundle domain FDP11_06345 PF17944 Arginine decarboxylase C-terminal helical extension FDP11_06345 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain FDP11_06350 PF00491 Arginase family FDP11_06355 PF07690 Major Facilitator Superfamily FDP11_06360 PF00326 Prolyl oligopeptidase family FDP11_06360 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain FDP11_06375 PF00950 ABC 3 transport family FDP11_06380 PF00005 ABC transporter FDP11_06385 PF01297 Zinc-uptake complex component A periplasmic FDP11_06425 PF02472 Biopolymer transport protein ExbD/TolR FDP11_06430 PF01618 MotA/TolQ/ExbB proton channel family FDP11_06435 PF01618 MotA/TolQ/ExbB proton channel family FDP11_06445 PF07715 TonB-dependent Receptor Plug Domain FDP11_06445 PF00593 TonB dependent receptor FDP11_06450 PF00672 HAMP domain FDP11_06450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_06450 PF00512 His Kinase A (phospho-acceptor) domain FDP11_06450 PF16750 Sensor domain of 2-component histidine kinase FDP11_06455 PF00486 Transcriptional regulatory protein, C terminal FDP11_06455 PF00072 Response regulator receiver domain FDP11_06460 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain FDP11_06460 PF00056 lactate/malate dehydrogenase, NAD binding domain FDP11_06465 PF03009 Glycerophosphoryl diester phosphodiesterase family FDP11_06475 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FDP11_06475 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FDP11_06480 PF10928 Protein of unknown function (DUF2810) FDP11_06535 PF04013 Putative SAM-dependent RNA methyltransferase FDP11_06540 PF01523 Putative modulator of DNA gyrase FDP11_06545 PF01523 Putative modulator of DNA gyrase FDP11_06555 PF08543 Phosphomethylpyrimidine kinase FDP11_06560 PF00005 ABC transporter FDP11_06565 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_06570 PF09084 NMT1/THI5 like FDP11_06575 PF03070 TENA/THI-4/PQQC family FDP11_06580 PF02110 Hydroxyethylthiazole kinase family FDP11_06585 PF02581 Thiamine monophosphate synthase FDP11_06595 PF00384 Molybdopterin oxidoreductase FDP11_06595 PF18364 Molybdopterin oxidoreductase N-terminal domain FDP11_06595 PF01568 Molydopterin dinucleotide binding domain FDP11_06600 PF03264 NapC/NirT cytochrome c family, N-terminal region FDP11_06625 PF00583 Acetyltransferase (GNAT) family FDP11_06645 PF00155 Aminotransferase class I and II FDP11_06645 PF00392 Bacterial regulatory proteins, gntR family FDP11_06650 PF02595 Glycerate kinase family FDP11_06655 PF02447 GntP family permease FDP11_06660 PF17853 GGDEF-like domain FDP11_06660 PF13556 PucR C-terminal helix-turn-helix domain FDP11_06660 PF05651 Putative sugar diacid recognition FDP11_06685 PF13419 Haloacid dehalogenase-like hydrolase FDP11_06700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_06700 PF03466 LysR substrate binding domain FDP11_06710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_06710 PF03466 LysR substrate binding domain FDP11_06715 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FDP11_06720 PF01661 Macro domain FDP11_06725 PF01204 Trehalase FDP11_06735 PF12706 Beta-lactamase superfamily domain FDP11_06745 PF07690 Major Facilitator Superfamily FDP11_06750 PF13533 Biotin-lipoyl like FDP11_06755 PF03922 OmpW family FDP11_06760 PF13599 Pentapeptide repeats (9 copies) FDP11_06775 PF18416 N-acetylglucosamine binding protein domain 2 FDP11_06775 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading FDP11_06780 PF01037 Lrp/AsnC ligand binding domain FDP11_06785 PF01810 LysE type translocator FDP11_06790 PF04954 Siderophore-interacting protein FDP11_06790 PF08021 Siderophore-interacting FAD-binding domain FDP11_06795 PF14583 Oligogalacturonate lyase FDP11_06800 PF00474 Sodium:solute symporter family FDP11_06805 PF13229 Right handed beta helix region FDP11_06820 PF01081 KDPG and KHG aldolase FDP11_06825 PF00294 pfkB family carbohydrate kinase FDP11_06840 PF07883 Cupin domain FDP11_06845 PF10688 Bacterial inner membrane protein FDP11_06855 PF01614 Bacterial transcriptional regulator FDP11_06855 PF09339 IclR helix-turn-helix domain FDP11_06870 PF03466 LysR substrate binding domain FDP11_06870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_06875 PF00797 N-acetyltransferase FDP11_06880 PF08240 Alcohol dehydrogenase GroES-like domain FDP11_06880 PF00107 Zinc-binding dehydrogenase FDP11_06885 PF00756 Putative esterase FDP11_06895 PF17152 Periplasmic sensor domain FDP11_06895 PF00990 Diguanylate cyclase, GGDEF domain FDP11_06910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_06910 PF03466 LysR substrate binding domain FDP11_06925 PF00849 RNA pseudouridylate synthase FDP11_06930 PF01554 MatE FDP11_06940 PF00563 EAL domain FDP11_06940 PF00990 Diguanylate cyclase, GGDEF domain FDP11_06950 PF06865 Pyrimidine/purine nucleoside phosphorylase FDP11_06960 PF00704 Glycosyl hydrolases family 18 FDP11_06960 PF08329 Chitinase A, N-terminal domain FDP11_06980 PF03600 Citrate transporter FDP11_06990 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 FDP11_07000 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FDP11_07000 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain FDP11_07005 PF00730 HhH-GPD superfamily base excision DNA repair protein FDP11_07005 PF06029 AlkA N-terminal domain FDP11_07020 PF07681 DoxX FDP11_07025 PF02678 Pirin FDP11_07025 PF17954 Quercetinase C-terminal cupin domain FDP11_07030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_07030 PF03466 LysR substrate binding domain FDP11_07045 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase FDP11_07060 PF03616 Sodium/glutamate symporter FDP11_07065 PF00392 Bacterial regulatory proteins, gntR family FDP11_07065 PF00155 Aminotransferase class I and II FDP11_07070 PF00005 ABC transporter FDP11_07080 PF03616 Sodium/glutamate symporter FDP11_07095 PF00132 Bacterial transferase hexapeptide (six repeats) FDP11_07110 PF17200 Single Cache domain 2 FDP11_07110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDP11_07110 PF00672 HAMP domain FDP11_07115 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FDP11_07125 PF04397 LytTr DNA-binding domain FDP11_07125 PF00072 Response regulator receiver domain FDP11_07130 PF06580 Histidine kinase FDP11_07130 PF07694 5TMR of 5TMR-LYT FDP11_07130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_07130 PF13492 GAF domain FDP11_07150 PF00005 ABC transporter FDP11_07165 PF01098 Cell cycle protein FDP11_07170 PF01709 Transcriptional regulator FDP11_07180 PF00072 Response regulator receiver domain FDP11_07180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_07180 PF17149 Periplasmic sensor domain found in signal transduction proteins FDP11_07180 PF00672 HAMP domain FDP11_07180 PF00512 His Kinase A (phospho-acceptor) domain FDP11_07180 PF01627 Hpt domain FDP11_07195 PF08719 Domain of unknown function (DUF1768) FDP11_07195 PF00925 GTP cyclohydrolase II FDP11_07205 PF00005 ABC transporter FDP11_07205 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FDP11_07210 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FDP11_07210 PF00005 ABC transporter FDP11_07225 PF13614 AAA domain FDP11_07225 PF18607 ParA helix turn helix domain FDP11_07230 PF08775 ParB family FDP11_07230 PF02195 ParB-like nuclease domain FDP11_07235 PF13718 GNAT acetyltransferase 2 FDP11_07235 PF05127 Helicase FDP11_07245 PF00132 Bacterial transferase hexapeptide (six repeats) FDP11_07255 PF03575 Peptidase family S51 FDP11_07265 PF00367 phosphotransferase system, EIIB FDP11_07265 PF02378 Phosphotransferase system, EIIC FDP11_07270 PF01380 SIS domain FDP11_07280 PF01380 SIS domain FDP11_07280 PF01418 Helix-turn-helix domain, rpiR family FDP11_07285 PF00246 Zinc carboxypeptidase FDP11_07290 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FDP11_07295 PF03358 NADPH-dependent FMN reductase FDP11_07305 PF00664 ABC transporter transmembrane region FDP11_07305 PF03412 Peptidase C39 family FDP11_07305 PF00005 ABC transporter FDP11_07320 PF00529 HlyD membrane-fusion protein of T1SS FDP11_07325 PF00158 Sigma-54 interaction domain FDP11_07325 PF00072 Response regulator receiver domain FDP11_07325 PF02954 Bacterial regulatory protein, Fis family FDP11_07330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_07330 PF02743 Cache domain FDP11_07330 PF00512 His Kinase A (phospho-acceptor) domain FDP11_07335 PF01243 Pyridoxamine 5'-phosphate oxidase FDP11_07335 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region FDP11_07350 PF12833 Helix-turn-helix domain FDP11_07355 PF00171 Aldehyde dehydrogenase family FDP11_07355 PF18327 Proline utilization A proline dehydrogenase N-terminal domain FDP11_07355 PF01619 Proline dehydrogenase FDP11_07355 PF14850 DNA-binding domain of Proline dehydrogenase FDP11_07365 PF00474 Sodium:solute symporter family FDP11_07400 PF01037 Lrp/AsnC ligand binding domain FDP11_07410 PF00664 ABC transporter transmembrane region FDP11_07410 PF00005 ABC transporter FDP11_07420 PF12833 Helix-turn-helix domain FDP11_07420 PF06719 AraC-type transcriptional regulator N-terminus FDP11_07440 PF10688 Bacterial inner membrane protein FDP11_07445 PF01081 KDPG and KHG aldolase FDP11_07450 PF00294 pfkB family carbohydrate kinase FDP11_07455 PF02614 Glucuronate isomerase FDP11_07460 PF08125 Mannitol dehydrogenase C-terminal domain FDP11_07460 PF01232 Mannitol dehydrogenase Rossmann domain FDP11_07465 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FDP11_07470 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component FDP11_07475 PF03480 Bacterial extracellular solute-binding protein, family 7 FDP11_07480 PF00392 Bacterial regulatory proteins, gntR family FDP11_07480 PF07729 FCD domain FDP11_07485 PF03786 D-mannonate dehydratase (UxuA) FDP11_07490 PF00271 Helicase conserved C-terminal domain FDP11_07490 PF00270 DEAD/DEAH box helicase FDP11_07495 PF03475 3-alpha domain FDP11_07495 PF03473 MOSC domain FDP11_07510 PF11975 Family 4 glycosyl hydrolase C-terminal domain FDP11_07510 PF02056 Family 4 glycosyl hydrolase FDP11_07515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_07515 PF03466 LysR substrate binding domain FDP11_07520 PF02743 Cache domain FDP11_07520 PF00672 HAMP domain FDP11_07520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDP11_07535 PF08281 Sigma-70, region 4 FDP11_07535 PF04542 Sigma-70 region 2 FDP11_07540 PF01965 DJ-1/PfpI family FDP11_07540 PF12833 Helix-turn-helix domain FDP11_07550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_07550 PF03466 LysR substrate binding domain FDP11_07570 PF13192 Thioredoxin domain FDP11_07570 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDP11_07575 PF10417 C-terminal domain of 1-Cys peroxiredoxin FDP11_07575 PF00578 AhpC/TSA family FDP11_07580 PF01047 MarR family FDP11_07585 PF02566 OsmC-like protein FDP11_07600 PF02311 AraC-like ligand binding domain FDP11_07600 PF12833 Helix-turn-helix domain FDP11_07610 PF11762 L-arabinose isomerase C-terminal domain FDP11_07610 PF02610 L-arabinose isomerase FDP11_07615 PF00596 Class II Aldolase and Adducin N-terminal domain FDP11_07620 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FDP11_07620 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FDP11_07625 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family FDP11_07630 PF00005 ABC transporter FDP11_07635 PF02653 Branched-chain amino acid transport system / permease component FDP11_07650 PF02378 Phosphotransferase system, EIIC FDP11_07650 PF00367 phosphotransferase system, EIIB FDP11_07660 PF00072 Response regulator receiver domain FDP11_07660 PF00486 Transcriptional regulatory protein, C terminal FDP11_07665 PF08521 Two-component sensor kinase N-terminal FDP11_07665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_07665 PF00512 His Kinase A (phospho-acceptor) domain FDP11_07670 PF01547 Bacterial extracellular solute-binding protein FDP11_07675 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain FDP11_07675 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain FDP11_07680 PF06276 Ferric iron reductase FhuF-like transporter FDP11_07680 PF04183 IucA / IucC family FDP11_07685 PF07690 Major Facilitator Superfamily FDP11_07690 PF06276 Ferric iron reductase FhuF-like transporter FDP11_07690 PF04183 IucA / IucC family FDP11_07695 PF00206 Lyase FDP11_07695 PF02655 ATP-grasp domain FDP11_07700 PF07715 TonB-dependent Receptor Plug Domain FDP11_07700 PF00593 TonB dependent receptor FDP11_07705 PF07715 TonB-dependent Receptor Plug Domain FDP11_07705 PF07660 Secretin and TonB N terminus short domain FDP11_07705 PF00593 TonB dependent receptor FDP11_07710 PF01497 Periplasmic binding protein FDP11_07715 PF01032 FecCD transport family FDP11_07720 PF01032 FecCD transport family FDP11_07725 PF00005 ABC transporter FDP11_07730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDP11_07730 PF17200 Single Cache domain 2 FDP11_07730 PF00672 HAMP domain FDP11_07735 PF00675 Insulinase (Peptidase family M16) FDP11_07735 PF05193 Peptidase M16 inactive domain FDP11_07745 PF01551 Peptidase family M23 FDP11_07745 PF04225 Opacity-associated protein A LysM-like domain FDP11_07755 PF07690 Major Facilitator Superfamily FDP11_07765 PF00128 Alpha amylase, catalytic domain FDP11_07765 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) FDP11_07770 PF02264 LamB porin FDP11_07785 PF16657 Maltogenic Amylase, C-terminal domain FDP11_07785 PF00128 Alpha amylase, catalytic domain FDP11_07785 PF02903 Alpha amylase, N-terminal ig-like domain FDP11_07795 PF04231 Endonuclease I FDP11_07800 PF03714 Bacterial pullanase-associated domain FDP11_07800 PF18494 Pullulanase Ins domain FDP11_07800 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) FDP11_07800 PF17967 Pullulanase N2 domain FDP11_07800 PF11852 Domain of unknown function (DUF3372) FDP11_07815 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain FDP11_07815 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain FDP11_07815 PF01276 Orn/Lys/Arg decarboxylase, major domain FDP11_07820 PF13520 Amino acid permease FDP11_07830 PF08543 Phosphomethylpyrimidine kinase FDP11_07840 PF00375 Sodium:dicarboxylate symporter family FDP11_07845 PF03193 RsgA GTPase FDP11_07850 PF02378 Phosphotransferase system, EIIC FDP11_07850 PF00367 phosphotransferase system, EIIB FDP11_07860 PF02630 SCO1/SenC FDP11_07875 PF17874 MalT-like TPR region FDP11_07875 PF00196 Bacterial regulatory proteins, luxR family FDP11_07890 PF00343 Carbohydrate phosphorylase FDP11_07895 PF02446 4-alpha-glucanotransferase FDP11_07900 PF00128 Alpha amylase, catalytic domain FDP11_07900 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) FDP11_07900 PF02806 Alpha amylase, C-terminal all-beta domain FDP11_07905 PF00912 Transglycosylase FDP11_07910 PF00128 Alpha amylase, catalytic domain FDP11_07925 PF07670 Nucleoside recognition FDP11_07930 PF07670 Nucleoside recognition FDP11_07935 PF01546 Peptidase family M20/M25/M40 FDP11_07935 PF07687 Peptidase dimerisation domain FDP11_07940 PF06803 Protein of unknown function (DUF1232) FDP11_07955 PF00375 Sodium:dicarboxylate symporter family FDP11_07965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_07965 PF03466 LysR substrate binding domain FDP11_07970 PF08803 Putative mono-oxygenase ydhR FDP11_07985 PF00881 Nitroreductase family FDP11_07990 PF01914 MarC family integral membrane protein FDP11_07995 PF01734 Patatin-like phospholipase FDP11_08000 PF18416 N-acetylglucosamine binding protein domain 2 FDP11_08000 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading FDP11_08015 PF00561 alpha/beta hydrolase fold FDP11_08020 PF00768 D-alanyl-D-alanine carboxypeptidase FDP11_08020 PF07943 Penicillin-binding protein 5, C-terminal domain FDP11_08025 PF00128 Alpha amylase, catalytic domain FDP11_08025 PF00686 Starch binding domain FDP11_08030 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term FDP11_08030 PF12833 Helix-turn-helix domain FDP11_08035 PF00881 Nitroreductase family FDP11_08045 PF03466 LysR substrate binding domain FDP11_08045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_08050 PF09905 DNA-binding protein VF530 FDP11_08060 PF00970 Oxidoreductase FAD-binding domain FDP11_08060 PF00175 Oxidoreductase NAD-binding domain FDP11_08070 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) FDP11_08075 PF01594 AI-2E family transporter FDP11_08085 PF13533 Biotin-lipoyl like FDP11_08110 PF00892 EamA-like transporter family FDP11_08115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_08115 PF03466 LysR substrate binding domain FDP11_08120 PF07690 Major Facilitator Superfamily FDP11_08135 PF00583 Acetyltransferase (GNAT) family FDP11_08145 PF00923 Transaldolase/Fructose-6-phosphate aldolase FDP11_08150 PF04055 Radical SAM superfamily FDP11_08155 PF02901 Pyruvate formate lyase-like FDP11_08155 PF01228 Glycine radical FDP11_08175 PF08000 Bacterial PH domain FDP11_08185 PF13677 Membrane MotB of proton-channel complex MotA/MotB FDP11_08185 PF00691 OmpA family FDP11_08190 PF01618 MotA/TolQ/ExbB proton channel family FDP11_08195 PF04545 Sigma-70, region 4 FDP11_08195 PF04542 Sigma-70 region 2 FDP11_08200 PF03748 Flagellar basal body-associated protein FliL FDP11_08215 PF02561 Flagellar protein FliS FDP11_08220 PF02465 Flagellar hook-associated protein 2 N-terminus FDP11_08220 PF07195 Flagellar hook-associated protein 2 C-terminus FDP11_08220 PF07196 Flagellin hook IN motif FDP11_08235 PF00669 Bacterial flagellin N-terminal helical region FDP11_08235 PF00700 Bacterial flagellin C-terminal helical region FDP11_08245 PF00771 FHIPEP family FDP11_08250 PF01312 FlhB HrpN YscU SpaS Family FDP11_08255 PF01311 Bacterial export proteins, family 1 FDP11_08260 PF01313 Bacterial export proteins, family 3 FDP11_08265 PF00813 FliP family FDP11_08270 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term FDP11_08285 PF02954 Bacterial regulatory protein, Fis family FDP11_08285 PF00158 Sigma-54 interaction domain FDP11_08285 PF00072 Response regulator receiver domain FDP11_08290 PF02049 Flagellar hook-basal body complex protein FliE FDP11_08295 PF08345 Flagellar M-ring protein C-terminal FDP11_08295 PF01514 Secretory protein of YscJ/FliF family FDP11_08300 PF01706 FliG C-terminal domain FDP11_08300 PF14842 FliG N-terminal domain FDP11_08300 PF14841 FliG middle domain FDP11_08310 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FDP11_08310 PF18269 T3SS EscN ATPase C-terminal domain FDP11_08325 PF03466 LysR substrate binding domain FDP11_08325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_08360 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FDP11_08365 PF03466 LysR substrate binding domain FDP11_08365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_08395 PF00072 Response regulator receiver domain FDP11_08395 PF00486 Transcriptional regulatory protein, C terminal FDP11_08400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_08400 PF00072 Response regulator receiver domain FDP11_08400 PF13426 PAS domain FDP11_08400 PF08448 PAS fold FDP11_08400 PF00512 His Kinase A (phospho-acceptor) domain FDP11_08405 PF00080 Copper/zinc superoxide dismutase (SODC) FDP11_08410 PF00266 Aminotransferase class-V FDP11_08415 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDP11_08420 PF00563 EAL domain FDP11_08420 PF00990 Diguanylate cyclase, GGDEF domain FDP11_08420 PF03707 Bacterial signalling protein N terminal repeat FDP11_08425 PF00155 Aminotransferase class I and II FDP11_08430 PF08240 Alcohol dehydrogenase GroES-like domain FDP11_08430 PF00107 Zinc-binding dehydrogenase FDP11_08465 PF00194 Eukaryotic-type carbonic anhydrase FDP11_08470 PF00924 Mechanosensitive ion channel FDP11_08480 PF01070 FMN-dependent dehydrogenase FDP11_08485 PF02652 L-lactate permease FDP11_08490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_08490 PF03466 LysR substrate binding domain FDP11_08495 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain FDP11_08495 PF00326 Prolyl oligopeptidase family FDP11_08500 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FDP11_08500 PF00005 ABC transporter FDP11_08510 PF05362 Lon protease (S16) C-terminal proteolytic domain FDP11_08510 PF13654 AAA domain FDP11_08515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDP11_08515 PF00672 HAMP domain FDP11_08520 PF12945 Flagellar protein YcgR FDP11_08520 PF07238 PilZ domain FDP11_08540 PF00583 Acetyltransferase (GNAT) family FDP11_08545 PF12800 4Fe-4S binding domain FDP11_08545 PF12838 4Fe-4S dicluster domain FDP11_08550 PF12801 4Fe-4S binding domain FDP11_08550 PF13237 4Fe-4S dicluster domain FDP11_08565 PF12558 ATP-binding cassette cobalt transporter FDP11_08565 PF00005 ABC transporter FDP11_08570 PF07155 ECF-type riboflavin transporter, S component FDP11_08575 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDP11_08575 PF00529 HlyD membrane-fusion protein of T1SS FDP11_08580 PF11742 Protein of unknown function (DUF3302) FDP11_08585 PF00990 Diguanylate cyclase, GGDEF domain FDP11_08600 PF01048 Phosphorylase superfamily FDP11_08610 PF08349 Protein of unknown function (DUF1722) FDP11_08615 PF13411 MerR HTH family regulatory protein FDP11_08620 PF03441 FAD binding domain of DNA photolyase FDP11_08620 PF00875 DNA photolyase FDP11_08625 PF03734 L,D-transpeptidase catalytic domain FDP11_08625 PF01476 LysM domain FDP11_08625 PF17969 L,D-transpeptidase C-terminal domain FDP11_08635 PF00270 DEAD/DEAH box helicase FDP11_08635 PF00271 Helicase conserved C-terminal domain FDP11_08640 PF00326 Prolyl oligopeptidase family FDP11_08640 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain FDP11_08645 PF07715 TonB-dependent Receptor Plug Domain FDP11_08645 PF00593 TonB dependent receptor FDP11_08670 PF02899 Phage integrase, N-terminal SAM-like domain FDP11_08670 PF00589 Phage integrase family FDP11_08675 PF13419 Haloacid dehalogenase-like hydrolase FDP11_08680 PF08495 FIST N domain FDP11_08680 PF00563 EAL domain FDP11_08680 PF00990 Diguanylate cyclase, GGDEF domain FDP11_08680 PF10442 FIST C domain FDP11_08710 PF12146 Serine aminopeptidase, S33 FDP11_08715 PF01810 LysE type translocator FDP11_08720 PF08668 HDOD domain FDP11_08720 PF00563 EAL domain FDP11_08725 PF01022 Bacterial regulatory protein, arsR family FDP11_08730 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FDP11_08730 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FDP11_08785 PF01914 MarC family integral membrane protein FDP11_08800 PF02881 SRP54-type protein, helical bundle domain FDP11_08800 PF00448 SRP54-type protein, GTPase domain FDP11_08805 PF00005 ABC transporter FDP11_08810 PF18075 FtsX extracellular domain FDP11_08815 PF04542 Sigma-70 region 2 FDP11_08815 PF04545 Sigma-70, region 4 FDP11_08815 PF00140 Sigma-70 factor, region 1.2 FDP11_08825 PF00581 Rhodanese-like domain FDP11_08830 PF01694 Rhomboid family FDP11_08830 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease FDP11_08835 PF03748 Flagellar basal body-associated protein FliL FDP11_08840 PF04345 Chorismate lyase FDP11_08845 PF01040 UbiA prenyltransferase family FDP11_08850 PF01553 Acyltransferase FDP11_08865 PF00717 Peptidase S24-like FDP11_08865 PF01726 LexA DNA binding domain FDP11_08870 PF04072 Leucine carboxyl methyltransferase FDP11_08875 PF01554 MatE FDP11_08880 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FDP11_08880 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDP11_08885 PF00440 Bacterial regulatory proteins, tetR family FDP11_08895 PF05958 tRNA (Uracil-5-)-methyltransferase FDP11_08900 PF07715 TonB-dependent Receptor Plug Domain FDP11_08900 PF00593 TonB dependent receptor FDP11_08910 PF01177 Asp/Glu/Hydantoin racemase FDP11_08940 PF13091 PLD-like domain FDP11_08950 PF01565 FAD binding domain FDP11_08950 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain FDP11_08955 PF08279 HTH domain FDP11_08955 PF02237 Biotin protein ligase C terminal domain FDP11_08955 PF03099 Biotin/lipoate A/B protein ligase family FDP11_08960 PF00485 Phosphoribulokinase / Uridine kinase family FDP11_08985 PF03144 Elongation factor Tu domain 2 FDP11_08985 PF00009 Elongation factor Tu GTP binding domain FDP11_08985 PF03143 Elongation factor Tu C-terminal domain FDP11_08995 PF00584 SecE/Sec61-gamma subunits of protein translocation complex FDP11_09000 PF02357 Transcription termination factor nusG FDP11_09000 PF00467 KOW motif FDP11_09005 PF00298 Ribosomal protein L11, RNA binding domain FDP11_09005 PF03946 Ribosomal protein L11, N-terminal domain FDP11_09010 PF00687 Ribosomal protein L1p/L10e family FDP11_09015 PF00466 Ribosomal protein L10 FDP11_09020 PF16320 Ribosomal protein L7/L12 dimerisation domain FDP11_09020 PF00542 Ribosomal protein L7/L12 C-terminal domain FDP11_09025 PF04561 RNA polymerase Rpb2, domain 2 FDP11_09025 PF04560 RNA polymerase Rpb2, domain 7 FDP11_09025 PF00562 RNA polymerase Rpb2, domain 6 FDP11_09025 PF10385 RNA polymerase beta subunit external 1 domain FDP11_09025 PF04565 RNA polymerase Rpb2, domain 3 FDP11_09025 PF04563 RNA polymerase beta subunit FDP11_09030 PF04983 RNA polymerase Rpb1, domain 3 FDP11_09030 PF00623 RNA polymerase Rpb1, domain 2 FDP11_09030 PF04997 RNA polymerase Rpb1, domain 1 FDP11_09030 PF04998 RNA polymerase Rpb1, domain 5 FDP11_09030 PF05000 RNA polymerase Rpb1, domain 4 FDP11_09035 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ FDP11_09040 PF09297 NADH pyrophosphatase zinc ribbon domain FDP11_09040 PF00293 NUDIX domain FDP11_09055 PF01208 Uroporphyrinogen decarboxylase (URO-D) FDP11_09060 PF03167 Uracil DNA glycosylase superfamily FDP11_09065 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FDP11_09070 PF04222 Protein of unknown function (DUF416) FDP11_09075 PF00571 CBS domain FDP11_09075 PF01595 Cyclin M transmembrane N-terminal domain FDP11_09080 PF00216 Bacterial DNA-binding protein FDP11_09090 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain FDP11_09090 PF02843 Phosphoribosylglycinamide synthetase, C domain FDP11_09090 PF02844 Phosphoribosylglycinamide synthetase, N domain FDP11_09100 PF02142 MGS-like domain FDP11_09100 PF01808 AICARFT/IMPCHase bienzyme FDP11_09110 PF13411 MerR HTH family regulatory protein FDP11_09115 PF00486 Transcriptional regulatory protein, C terminal FDP11_09115 PF18500 CadC C-terminal domain 1 FDP11_09125 PF13520 Amino acid permease FDP11_09130 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain FDP11_09130 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain FDP11_09130 PF01276 Orn/Lys/Arg decarboxylase, major domain FDP11_09225 PF13358 DDE superfamily endonuclease FDP11_09235 PF00990 Diguanylate cyclase, GGDEF domain FDP11_09235 PF05230 MASE2 domain FDP11_09240 PF12848 ABC transporter FDP11_09240 PF00005 ABC transporter FDP11_09245 PF07690 Major Facilitator Superfamily FDP11_09250 PF02954 Bacterial regulatory protein, Fis family FDP11_09255 PF01207 Dihydrouridine synthase (Dus) FDP11_09270 PF02785 Biotin carboxylase C-terminal domain FDP11_09270 PF00289 Biotin carboxylase, N-terminal domain FDP11_09270 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FDP11_09275 PF00364 Biotin-requiring enzyme FDP11_09280 PF01220 Dehydroquinase class II FDP11_09285 PF00501 AMP-binding enzyme FDP11_09285 PF16177 Acetyl-coenzyme A synthetase N-terminus FDP11_09285 PF13193 AMP-binding enzyme C-terminal domain FDP11_09300 PF12832 MFS_1 like family FDP11_09305 PF01627 Hpt domain FDP11_09305 PF00672 HAMP domain FDP11_09305 PF00512 His Kinase A (phospho-acceptor) domain FDP11_09305 PF00072 Response regulator receiver domain FDP11_09305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_09310 PF10415 Fumarase C C-terminus FDP11_09310 PF00206 Lyase FDP11_09330 PF00474 Sodium:solute symporter family FDP11_09340 PF03471 Transporter associated domain FDP11_09340 PF00999 Sodium/hydrogen exchanger family FDP11_09340 PF02080 TrkA-C domain FDP11_09345 PF00196 Bacterial regulatory proteins, luxR family FDP11_09345 PF00072 Response regulator receiver domain FDP11_09350 PF02683 Cytochrome C biogenesis protein transmembrane region FDP11_09350 PF11412 Disulphide bond corrector protein DsbC FDP11_09355 PF03605 Anaerobic c4-dicarboxylate membrane transporter FDP11_09360 PF10415 Fumarase C C-terminus FDP11_09360 PF00206 Lyase FDP11_09365 PF04186 FxsA cytoplasmic membrane protein FDP11_09370 PF00588 SpoU rRNA Methylase family FDP11_09375 PF02777 Iron/manganese superoxide dismutases, C-terminal domain FDP11_09375 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain FDP11_09380 PF16527 Two-component sensor protein CpxA, periplasmic domain FDP11_09380 PF00512 His Kinase A (phospho-acceptor) domain FDP11_09380 PF00672 HAMP domain FDP11_09380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_09385 PF00486 Transcriptional regulatory protein, C terminal FDP11_09385 PF00072 Response regulator receiver domain FDP11_09395 PF07813 LTXXQ motif family protein FDP11_09400 PF16916 Dimerisation domain of Zinc Transporter FDP11_09400 PF01545 Cation efflux family FDP11_09405 PF00365 Phosphofructokinase FDP11_09410 PF01554 MatE FDP11_09415 PF00166 Chaperonin 10 Kd subunit FDP11_09420 PF00118 TCP-1/cpn60 chaperonin family FDP11_09430 PF02308 MgtC family FDP11_09435 PF00842 Alanine racemase, C-terminal domain FDP11_09435 PF01168 Alanine racemase, N-terminal domain FDP11_09445 PF04055 Radical SAM superfamily FDP11_09450 PF08207 Elongation factor P (EF-P) KOW-like domain FDP11_09450 PF09285 Elongation factor P, C-terminal FDP11_09450 PF01132 Elongation factor P (EF-P) OB domain FDP11_09460 PF02313 Fumarate reductase subunit D FDP11_09465 PF02300 Fumarate reductase subunit C FDP11_09470 PF13183 4Fe-4S dicluster domain FDP11_09470 PF13085 2Fe-2S iron-sulfur cluster binding domain FDP11_09475 PF00890 FAD binding domain FDP11_09475 PF02910 Fumarate reductase flavoprotein C-term FDP11_09485 PF00152 tRNA synthetases class II (D, K and N) FDP11_09495 PF08360 QacR-like protein, C-terminal region FDP11_09495 PF00440 Bacterial regulatory proteins, tetR family FDP11_09505 PF01551 Peptidase family M23 FDP11_09510 PF00132 Bacterial transferase hexapeptide (six repeats) FDP11_09510 PF06426 Serine acetyltransferase, N-terminal FDP11_09515 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FDP11_09515 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus FDP11_09520 PF02556 Preprotein translocase subunit SecB FDP11_09525 PF00581 Rhodanese-like domain FDP11_09530 PF06415 BPG-independent PGAM N-terminus (iPGM_N) FDP11_09530 PF01676 Metalloenzyme superfamily FDP11_09540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDP11_09540 PF00672 HAMP domain FDP11_09545 PF00939 Sodium:sulfate symporter transmembrane region FDP11_09550 PF02666 Phosphatidylserine decarboxylase FDP11_09555 PF03193 RsgA GTPase FDP11_09560 PF00929 Exonuclease FDP11_09630 PF08331 Domain of unknown function (DUF1730) FDP11_09635 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE FDP11_09640 PF01520 N-acetylmuramoyl-L-alanine amidase FDP11_09645 PF08676 MutL C terminal dimerisation domain FDP11_09645 PF01119 DNA mismatch repair protein, C-terminal domain FDP11_09655 PF17209 Hfq protein FDP11_09660 PF13167 GTP-binding GTPase N-terminal FDP11_09660 PF16360 GTP-binding GTPase Middle Region FDP11_09660 PF01926 50S ribosome-binding GTPase FDP11_09665 PF12221 Bacterial membrane protein N terminal FDP11_09665 PF01145 SPFH domain / Band 7 family FDP11_09670 PF01145 SPFH domain / Band 7 family FDP11_09675 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) FDP11_09680 PF00709 Adenylosuccinate synthetase FDP11_09690 PF08238 Sel1 repeat FDP11_09695 PF00042 Globin FDP11_09695 PF00175 Oxidoreductase NAD-binding domain FDP11_09695 PF00970 Oxidoreductase FAD-binding domain FDP11_09700 PF02082 Transcriptional regulator FDP11_09705 PF17876 Cold shock domain FDP11_09705 PF08461 Ribonuclease R winged-helix domain FDP11_09705 PF08206 Ribonuclease B OB domain FDP11_09705 PF00773 RNB domain FDP11_09705 PF00575 S1 RNA binding domain FDP11_09710 PF08032 RNA 2'-O ribose methyltransferase substrate binding FDP11_09710 PF00588 SpoU rRNA Methylase family FDP11_09715 PF13419 Haloacid dehalogenase-like hydrolase FDP11_09720 PF00579 tRNA synthetases class I (W and Y) FDP11_09750 PF00117 Glutamine amidotransferase class-I FDP11_09755 PF00202 Aminotransferase class-III FDP11_09760 PF04958 Arginine N-succinyltransferase beta subunit FDP11_09765 PF00171 Aldehyde dehydrogenase family FDP11_09775 PF00027 Cyclic nucleotide-binding domain FDP11_09775 PF13545 Crp-like helix-turn-helix domain FDP11_09780 PF00485 Phosphoribulokinase / Uridine kinase family FDP11_09785 PF06794 Uncharacterised protein family (UPF0270) FDP11_09790 PF00561 alpha/beta hydrolase fold FDP11_09800 PF12848 ABC transporter FDP11_09800 PF00005 ABC transporter FDP11_09810 PF02525 Flavodoxin-like fold FDP11_09815 PF00999 Sodium/hydrogen exchanger family FDP11_09815 PF02254 TrkA-N domain FDP11_09825 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FDP11_09835 PF01112 Asparaginase FDP11_09840 PF04102 SlyX FDP11_09850 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FDP11_09850 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FDP11_09855 PF08348 YheO-like PAS domain FDP11_09855 PF13309 HTH domain FDP11_09860 PF02635 DsrE/DsrF-like family FDP11_09865 PF02635 DsrE/DsrF-like family FDP11_09870 PF04077 DsrH like protein FDP11_09875 PF00164 Ribosomal protein S12/S23 FDP11_09880 PF00177 Ribosomal protein S7p/S5e FDP11_09885 PF03144 Elongation factor Tu domain 2 FDP11_09885 PF00679 Elongation factor G C-terminus FDP11_09885 PF14492 Elongation Factor G, domain II FDP11_09885 PF03764 Elongation factor G, domain IV FDP11_09885 PF00009 Elongation factor Tu GTP binding domain FDP11_09890 PF03144 Elongation factor Tu domain 2 FDP11_09890 PF03143 Elongation factor Tu C-terminal domain FDP11_09890 PF00009 Elongation factor Tu GTP binding domain FDP11_09895 PF04324 BFD-like [2Fe-2S] binding domain FDP11_09900 PF00210 Ferritin-like domain FDP11_09905 PF00390 Malic enzyme, N-terminal domain FDP11_09905 PF03949 Malic enzyme, NAD binding domain FDP11_09910 PF01340 Met Apo-repressor, MetJ FDP11_09915 PF01053 Cys/Met metabolism PLP-dependent enzyme FDP11_09920 PF00696 Amino acid kinase family FDP11_09920 PF00742 Homoserine dehydrogenase FDP11_09920 PF03447 Homoserine dehydrogenase, NAD binding domain FDP11_09925 PF02219 Methylenetetrahydrofolate reductase FDP11_09935 PF00311 Phosphoenolpyruvate carboxylase FDP11_09940 PF01546 Peptidase family M20/M25/M40 FDP11_09940 PF07687 Peptidase dimerisation domain FDP11_09945 PF01118 Semialdehyde dehydrogenase, NAD binding domain FDP11_09945 PF02774 Semialdehyde dehydrogenase, dimerisation domain FDP11_09950 PF00696 Amino acid kinase family FDP11_09955 PF00764 Arginosuccinate synthase FDP11_09960 PF14698 Argininosuccinate lyase C-terminal FDP11_09960 PF00206 Lyase FDP11_09960 PF00583 Acetyltransferase (GNAT) family FDP11_09975 PF00462 Glutaredoxin FDP11_09975 PF08534 Redoxin FDP11_09980 PF03466 LysR substrate binding domain FDP11_09980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_09985 PF00905 Penicillin binding protein transpeptidase domain FDP11_09985 PF17092 Penicillin-binding protein OB-like domain FDP11_09985 PF00912 Transglycosylase FDP11_10010 PF03958 Bacterial type II/III secretion system short domain FDP11_10010 PF07660 Secretin and TonB N terminus short domain FDP11_10010 PF00263 Bacterial type II and III secretion system protein FDP11_10010 PF11741 AMIN domain FDP11_10015 PF01202 Shikimate kinase FDP11_10020 PF01761 3-dehydroquinate synthase FDP11_10030 PF02086 D12 class N6 adenine-specific DNA methyltransferase FDP11_10035 PF00834 Ribulose-phosphate 3 epimerase family FDP11_10040 PF01250 Ribosomal protein S6 FDP11_10045 PF00436 Single-strand binding protein family FDP11_10050 PF01084 Ribosomal protein S18 FDP11_10055 PF03948 Ribosomal protein L9, C-terminal domain FDP11_10055 PF01281 Ribosomal protein L9, N-terminal domain FDP11_10065 PF00772 DnaB-like helicase N terminal domain FDP11_10065 PF03796 DnaB-like helicase C terminal domain FDP11_10070 PF01168 Alanine racemase, N-terminal domain FDP11_10070 PF00842 Alanine racemase, C-terminal domain FDP11_10120 PF13657 HipA N-terminal domain FDP11_10120 PF07804 HipA-like C-terminal domain FDP11_10180 PF00342 Phosphoglucose isomerase FDP11_10190 PF01475 Ferric uptake regulator family FDP11_10200 PF01207 Dihydrouridine synthase (Dus) FDP11_10225 PF00175 Oxidoreductase NAD-binding domain FDP11_10225 PF00667 FAD binding domain FDP11_10225 PF00258 Flavodoxin FDP11_10230 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FDP11_10230 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FDP11_10235 PF01507 Phosphoadenosine phosphosulfate reductase family FDP11_10305 PF00999 Sodium/hydrogen exchanger family FDP11_10310 PF02965 Vitamin B12 dependent methionine synthase, activation domain FDP11_10310 PF02574 Homocysteine S-methyltransferase FDP11_10310 PF02607 B12 binding domain FDP11_10310 PF02310 B12 binding domain FDP11_10310 PF00809 Pterin binding enzyme FDP11_10315 PF01842 ACT domain FDP11_10315 PF00696 Amino acid kinase family FDP11_10325 PF00266 Aminotransferase class-V FDP11_10335 PF17760 UvrA interaction domain FDP11_10335 PF17755 UvrA DNA-binding domain FDP11_10335 PF00005 ABC transporter FDP11_10340 PF00483 Nucleotidyl transferase FDP11_10345 PF00196 Bacterial regulatory proteins, luxR family FDP11_10350 PF00436 Single-strand binding protein family FDP11_10355 PF00563 EAL domain FDP11_10355 PF17157 Gammaproteobacterial periplasmic sensor domain FDP11_10355 PF00990 Diguanylate cyclase, GGDEF domain FDP11_10375 PF07660 Secretin and TonB N terminus short domain FDP11_10375 PF11741 AMIN domain FDP11_10375 PF00263 Bacterial type II and III secretion system protein FDP11_10375 PF03958 Bacterial type II/III secretion system short domain FDP11_10380 PF01471 Putative peptidoglycan binding domain FDP11_10380 PF13401 AAA domain FDP11_10390 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain FDP11_10390 PF00437 Type II/IV secretion system protein FDP11_10395 PF00482 Type II secretion system (T2SS), protein F FDP11_10405 PF07963 Prokaryotic N-terminal methylation motif FDP11_10405 PF00114 Pilin (bacterial filament) FDP11_10445 PF04085 rod shape-determining protein MreC FDP11_10450 PF04093 rod shape-determining protein MreD FDP11_10455 PF02545 Maf-like protein FDP11_10460 PF00575 S1 RNA binding domain FDP11_10460 PF10150 Ribonuclease E/G family FDP11_10465 PF13116 Protein of unknown function FDP11_10465 PF13502 AsmA-like C-terminal region FDP11_10470 PF00795 Carbon-nitrogen hydrolase FDP11_10475 PF01523 Putative modulator of DNA gyrase FDP11_10480 PF02562 PhoH-like protein FDP11_10480 PF13638 PIN domain FDP11_10485 PF12137 RNA polymerase recycling family C-terminal FDP11_10485 PF00176 SNF2 family N-terminal domain FDP11_10485 PF00271 Helicase conserved C-terminal domain FDP11_10485 PF18339 RapA N-terminal Tudor like domain 1 FDP11_10485 PF18337 RapA N-terminal Tudor like domain FDP11_10500 PF00849 RNA pseudouridylate synthase FDP11_10505 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FDP11_10505 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FDP11_10510 PF04751 Protein of unknown function (DUF615) FDP11_10515 PF01523 Putative modulator of DNA gyrase FDP11_10520 PF03448 MgtE intracellular N domain FDP11_10520 PF01769 Divalent cation transporter FDP11_10520 PF00571 CBS domain FDP11_10525 PF00381 PTS HPr component phosphorylation site FDP11_10530 PF03668 P-loop ATPase protein family FDP11_10535 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FDP11_10540 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein FDP11_10545 PF04963 Sigma-54 factor, core binding domain FDP11_10545 PF04552 Sigma-54, DNA binding domain FDP11_10545 PF00309 Sigma-54 factor, Activator interacting domain (AID) FDP11_10550 PF00005 ABC transporter FDP11_10550 PF12399 Branched-chain amino acid ATP-binding cassette transporter FDP11_10555 PF03968 OstA-like protein FDP11_10565 PF01380 SIS domain FDP11_10565 PF00571 CBS domain FDP11_10570 PF01699 Sodium/calcium exchanger protein FDP11_10575 PF00005 ABC transporter FDP11_10580 PF02405 Permease MlaE FDP11_10585 PF02470 MlaD protein FDP11_10590 PF05494 MlaC protein FDP11_10600 PF01722 BolA-like protein FDP11_10605 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FDP11_10610 PF01553 Acyltransferase FDP11_10615 PF01042 Endoribonuclease L-PSP FDP11_10620 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain FDP11_10620 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain FDP11_10625 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FDP11_10625 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FDP11_10635 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FDP11_10635 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FDP11_10650 PF06877 Regulator of ribonuclease activity B FDP11_10660 PF00583 Acetyltransferase (GNAT) family FDP11_10670 PF08264 Anticodon-binding domain of tRNA FDP11_10670 PF10458 Valyl tRNA synthetase tRNA binding arm FDP11_10670 PF00133 tRNA synthetases class I (I, L, M and V) FDP11_10675 PF04364 DNA polymerase III chi subunit, HolC FDP11_10680 PF02789 Cytosol aminopeptidase family, N-terminal domain FDP11_10680 PF00883 Cytosol aminopeptidase family, catalytic domain FDP11_10685 PF03739 Lipopolysaccharide export system permease LptF/LptG FDP11_10690 PF03739 Lipopolysaccharide export system permease LptF/LptG FDP11_10700 PF10011 Predicted membrane protein (DUF2254) FDP11_10705 PF00106 short chain dehydrogenase FDP11_10720 PF08360 QacR-like protein, C-terminal region FDP11_10720 PF00440 Bacterial regulatory proteins, tetR family FDP11_10730 PF13533 Biotin-lipoyl like FDP11_10735 PF01522 Polysaccharide deacetylase FDP11_10740 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FDP11_10745 PF02378 Phosphotransferase system, EIIC FDP11_10750 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit FDP11_10755 PF02056 Family 4 glycosyl hydrolase FDP11_10755 PF11975 Family 4 glycosyl hydrolase C-terminal domain FDP11_10760 PF04794 YdjC-like protein FDP11_10765 PF00356 Bacterial regulatory proteins, lacI family FDP11_10765 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family FDP11_10770 PF00072 Response regulator receiver domain FDP11_10820 PF00171 Aldehyde dehydrogenase family FDP11_10850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDP11_10850 PF17200 Single Cache domain 2 FDP11_10850 PF00672 HAMP domain FDP11_10890 PF01464 Transglycosylase SLT domain FDP11_10890 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain FDP11_10895 PF04362 Bacterial Fe(2+) trafficking FDP11_10900 PF00633 Helix-hairpin-helix motif FDP11_10900 PF14815 NUDIX domain FDP11_10900 PF00730 HhH-GPD superfamily base excision DNA repair protein FDP11_10905 PF02390 Putative methyltransferase FDP11_10910 PF02086 D12 class N6 adenine-specific DNA methyltransferase FDP11_10915 PF04960 Glutaminase FDP11_10920 PF04055 Radical SAM superfamily FDP11_10920 PF06969 HemN C-terminal domain FDP11_10925 PF01725 Ham1 family FDP11_10935 PF02594 Uncharacterised ACR, YggU family COG1872 FDP11_10940 PF02325 YGGT family FDP11_10945 PF14748 Pyrroline-5-carboxylate reductase dimerisation FDP11_10945 PF03807 NADP oxidoreductase coenzyme F420-dependent FDP11_10950 PF01168 Alanine racemase, N-terminal domain FDP11_10955 PF00437 Type II/IV secretion system protein FDP11_10960 PF00437 Type II/IV secretion system protein FDP11_10965 PF03652 Holliday junction resolvase FDP11_10970 PF02622 Uncharacterized ACR, COG1678 FDP11_10975 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain FDP11_10975 PF02951 Prokaryotic glutathione synthetase, N-terminal domain FDP11_10980 PF04452 RNA methyltransferase FDP11_10985 PF04231 Endonuclease I FDP11_10990 PF17283 SprT-like zinc ribbon domain FDP11_10990 PF10263 SprT-like family FDP11_11000 PF02772 S-adenosylmethionine synthetase, central domain FDP11_11000 PF00438 S-adenosylmethionine synthetase, N-terminal domain FDP11_11000 PF02773 S-adenosylmethionine synthetase, C-terminal domain FDP11_11010 PF00456 Transketolase, thiamine diphosphate binding domain FDP11_11010 PF02780 Transketolase, C-terminal domain FDP11_11010 PF02779 Transketolase, pyrimidine binding domain FDP11_11015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_11015 PF03466 LysR substrate binding domain FDP11_11020 PF00593 TonB dependent receptor FDP11_11020 PF07715 TonB-dependent Receptor Plug Domain FDP11_11025 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FDP11_11025 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FDP11_11030 PF00162 Phosphoglycerate kinase FDP11_11035 PF01116 Fructose-bisphosphate aldolase class-II FDP11_11040 PF00924 Mechanosensitive ion channel FDP11_11040 PF05552 Conserved TM helix FDP11_11045 PF04073 Aminoacyl-tRNA editing domain FDP11_11050 PF01810 LysE type translocator FDP11_11055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_11055 PF03466 LysR substrate binding domain FDP11_11060 PF04402 Protein of unknown function (DUF541) FDP11_11065 PF01842 ACT domain FDP11_11065 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FDP11_11065 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FDP11_11070 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) FDP11_11075 PF01812 5-formyltetrahydrofolate cyclo-ligase family FDP11_11085 PF05164 Cell division protein ZapA FDP11_11095 PF03695 Uncharacterised protein family (UPF0149) FDP11_11100 PF01494 FAD binding domain FDP11_11105 PF01494 FAD binding domain FDP11_11120 PF01571 Aminomethyltransferase folate-binding domain FDP11_11125 PF03937 Flavinator of succinate dehydrogenase FDP11_11135 PF02910 Fumarate reductase flavoprotein C-term FDP11_11135 PF00890 FAD binding domain FDP11_11145 PF08281 Sigma-70, region 4 FDP11_11145 PF04542 Sigma-70 region 2 FDP11_11150 PF03873 Anti sigma-E protein RseA, C-terminal domain FDP11_11150 PF03872 Anti sigma-E protein RseA, N-terminal domain FDP11_11155 PF03888 MucB/RseB N-terminal domain FDP11_11155 PF17188 MucB/RseB C-terminal domain FDP11_11165 PF00679 Elongation factor G C-terminus FDP11_11165 PF00009 Elongation factor Tu GTP binding domain FDP11_11165 PF03144 Elongation factor Tu domain 2 FDP11_11165 PF06421 GTP-binding protein LepA C-terminus FDP11_11170 PF10502 Signal peptidase, peptidase S26 FDP11_11175 PF14622 Ribonuclease-III-like FDP11_11175 PF00035 Double-stranded RNA binding motif FDP11_11180 PF01926 50S ribosome-binding GTPase FDP11_11180 PF07650 KH domain FDP11_11185 PF11967 Recombination protein O N terminal FDP11_11185 PF02565 Recombination protein O C terminal FDP11_11190 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ FDP11_11195 PF01648 4'-phosphopantetheinyl transferase superfamily FDP11_11200 PF00512 His Kinase A (phospho-acceptor) domain FDP11_11200 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FDP11_11200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_11200 PF00672 HAMP domain FDP11_11200 PF00072 Response regulator receiver domain FDP11_11200 PF01627 Hpt domain FDP11_11210 PF01938 TRAM domain FDP11_11210 PF05958 tRNA (Uracil-5-)-methyltransferase FDP11_11220 PF13291 ACT domain FDP11_11220 PF04607 Region found in RelA / SpoT proteins FDP11_11220 PF02824 TGS domain FDP11_11225 PF03819 MazG nucleotide pyrophosphohydrolase domain FDP11_11230 PF06418 CTP synthase N-terminus FDP11_11230 PF00117 Glutamine amidotransferase class-I FDP11_11235 PF00113 Enolase, C-terminal TIM barrel domain FDP11_11235 PF03952 Enolase, N-terminal domain FDP11_11240 PF04977 Septum formation initiator FDP11_11245 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase FDP11_11250 PF02542 YgbB family FDP11_11255 PF01142 tRNA pseudouridine synthase D (TruD) FDP11_11260 PF01975 Survival protein SurE FDP11_11270 PF01551 Peptidase family M23 FDP11_11270 PF01476 LysM domain FDP11_11280 PF00488 MutS domain V FDP11_11280 PF05192 MutS domain III FDP11_11280 PF05188 MutS domain II FDP11_11280 PF01624 MutS domain I FDP11_11280 PF05190 MutS family domain IV FDP11_11285 PF02464 Competence-damaged protein FDP11_11290 PF00154 recA bacterial DNA recombination protein FDP11_11295 PF02631 RecX family FDP11_11300 PF01411 tRNA synthetases class II (A) FDP11_11300 PF02272 DHHA1 domain FDP11_11300 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FDP11_11305 PF13840 ACT domain FDP11_11305 PF00696 Amino acid kinase family FDP11_11305 PF01842 ACT domain FDP11_11310 PF02599 Global regulator protein family FDP11_11365 PF04277 Oxaloacetate decarboxylase, gamma chain FDP11_11370 PF00364 Biotin-requiring enzyme FDP11_11370 PF00682 HMGL-like FDP11_11370 PF02436 Conserved carboxylase domain FDP11_11375 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit FDP11_11380 PF08240 Alcohol dehydrogenase GroES-like domain FDP11_11380 PF00107 Zinc-binding dehydrogenase FDP11_11385 PF09335 SNARE associated Golgi protein FDP11_11390 PF00675 Insulinase (Peptidase family M16) FDP11_11390 PF05193 Peptidase M16 inactive domain FDP11_11395 PF04262 Glutamate-cysteine ligase FDP11_11405 PF02664 S-Ribosylhomocysteinase (LuxS) FDP11_11410 PF03471 Transporter associated domain FDP11_11410 PF00571 CBS domain FDP11_11410 PF01595 Cyclin M transmembrane N-terminal domain FDP11_11415 PF01578 Cytochrome C assembly protein FDP11_11420 PF02978 Signal peptide binding domain FDP11_11420 PF00448 SRP54-type protein, GTPase domain FDP11_11420 PF02881 SRP54-type protein, helical bundle domain FDP11_11425 PF00886 Ribosomal protein S16 FDP11_11430 PF05239 PRC-barrel domain FDP11_11430 PF01782 RimM N-terminal domain FDP11_11435 PF01746 tRNA (Guanine-1)-methyltransferase FDP11_11440 PF01245 Ribosomal protein L19 FDP11_11445 PF03884 DNA gyrase inhibitor YacG FDP11_11450 PF07072 Cell division protein FDP11_11455 PF01121 Dephospho-CoA kinase FDP11_11460 PF06750 Bacterial Peptidase A24 N-terminal domain FDP11_11460 PF01478 Type IV leader peptidase family FDP11_11465 PF00482 Type II secretion system (T2SS), protein F FDP11_11470 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain FDP11_11470 PF00437 Type II/IV secretion system protein FDP11_11475 PF07963 Prokaryotic N-terminal methylation motif FDP11_11475 PF00114 Pilin (bacterial filament) FDP11_11480 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain FDP11_11480 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain FDP11_11485 PF01510 N-acetylmuramoyl-L-alanine amidase FDP11_11490 PF07729 FCD domain FDP11_11490 PF00392 Bacterial regulatory proteins, gntR family FDP11_11495 PF00456 Transketolase, thiamine diphosphate binding domain FDP11_11495 PF17831 Pyruvate dehydrogenase E1 component middle domain FDP11_11500 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FDP11_11500 PF00364 Biotin-requiring enzyme FDP11_11500 PF02817 e3 binding domain FDP11_11505 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDP11_11505 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FDP11_11510 PF00440 Bacterial regulatory proteins, tetR family FDP11_11515 PF00156 Phosphoribosyl transferase domain FDP11_11520 PF00484 Carbonic anhydrase FDP11_11525 PF01740 STAS domain FDP11_11525 PF00916 Sulfate permease family FDP11_11535 PF00005 ABC transporter FDP11_11540 PF01061 ABC-2 type transporter FDP11_11550 PF03279 Bacterial lipid A biosynthesis acyltransferase FDP11_11560 PF02569 Pantoate-beta-alanine ligase FDP11_11565 PF02548 Ketopantoate hydroxymethyltransferase FDP11_11570 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) FDP11_11575 PF12627 Probable RNA and SrmB- binding site of polymerase A FDP11_11575 PF01743 Poly A polymerase head domain FDP11_11575 PF12626 Polymerase A arginine-rich C-terminus FDP11_11585 PF00749 tRNA synthetases class I (E and Q), catalytic domain FDP11_11595 PF01258 Prokaryotic dksA/traR C4-type zinc finger FDP11_11600 PF17746 SfsA N-terminal OB domain FDP11_11600 PF03749 Sugar fermentation stimulation protein RE domain FDP11_11605 PF00270 DEAD/DEAH box helicase FDP11_11605 PF00271 Helicase conserved C-terminal domain FDP11_11605 PF08482 ATP-dependent helicase C-terminal FDP11_11605 PF04408 Helicase associated domain (HA2) FDP11_11610 PF14814 Bifunctional transglycosylase second domain FDP11_11610 PF00905 Penicillin binding protein transpeptidase domain FDP11_11610 PF00912 Transglycosylase FDP11_11615 PF01734 Patatin-like phospholipase FDP11_11620 PF00330 Aconitase family (aconitate hydratase) FDP11_11620 PF11791 Aconitate B N-terminal domain FDP11_11620 PF06434 Aconitate hydratase 2 N-terminus FDP11_11625 PF06062 Uncharacterised protein family (UPF0231) FDP11_11630 PF00543 Nitrogen regulatory protein P-II FDP11_11635 PF00909 Ammonium Transporter Family FDP11_11640 PF13416 Bacterial extracellular solute-binding protein FDP11_11650 PF00005 ABC transporter FDP11_11650 PF08402 TOBE domain FDP11_11655 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FDP11_11655 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FDP11_11655 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FDP11_11655 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FDP11_11660 PF06165 Glycosyltransferase family 36 FDP11_11660 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain FDP11_11665 PF00728 Glycosyl hydrolase family 20, catalytic domain FDP11_11665 PF02838 Glycosyl hydrolase family 20, domain 2 FDP11_11670 PF01869 BadF/BadG/BcrA/BcrD ATPase family FDP11_11680 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FDP11_11680 PF00005 ABC transporter FDP11_11685 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FDP11_11685 PF00005 ABC transporter FDP11_11690 PF12911 N-terminal TM domain of oligopeptide transport permease C FDP11_11690 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_11695 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_11700 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FDP11_11705 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDP11_11705 PF00072 Response regulator receiver domain FDP11_11705 PF00512 His Kinase A (phospho-acceptor) domain FDP11_11705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_11715 PF05175 Methyltransferase small domain FDP11_11715 PF08468 Methyltransferase small domain N-terminal FDP11_11720 PF01594 AI-2E family transporter FDP11_11725 PF00202 Aminotransferase class-III FDP11_11730 PF01521 Iron-sulphur cluster biosynthesis FDP11_11740 PF00873 AcrB/AcrD/AcrF family FDP11_11745 PF08525 Opacity-associated protein A N-terminal motif FDP11_11745 PF01551 Peptidase family M23 FDP11_11745 PF01476 LysM domain FDP11_11750 PF00579 tRNA synthetases class I (W and Y) FDP11_11755 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDP11_11755 PF01464 Transglycosylase SLT domain FDP11_11760 PF02769 AIR synthase related protein, C-terminal domain FDP11_11760 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain FDP11_11760 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal FDP11_11785 PF01546 Peptidase family M20/M25/M40 FDP11_11785 PF07687 Peptidase dimerisation domain FDP11_11790 PF00860 Permease family FDP11_11795 PF00156 Phosphoribosyl transferase domain FDP11_11805 PF07417 Sigma factor-binding transcriptional regulator Crl FDP11_11810 PF01472 PUA domain FDP11_11810 PF00696 Amino acid kinase family FDP11_11815 PF00171 Aldehyde dehydrogenase family FDP11_11820 PF03477 ATP cone domain FDP11_11825 PF01872 RibD C-terminal domain FDP11_11825 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FDP11_11830 PF00677 Lumazine binding domain FDP11_11835 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase FDP11_11835 PF00925 GTP cyclohydrolase II FDP11_11840 PF00885 6,7-dimethyl-8-ribityllumazine synthase FDP11_11845 PF01029 NusB family FDP11_11850 PF02769 AIR synthase related protein, C-terminal domain FDP11_11850 PF00586 AIR synthase related protein, N-terminal domain FDP11_11855 PF04608 Phosphatidylglycerophosphatase A FDP11_11860 PF13292 1-deoxy-D-xylulose-5-phosphate synthase FDP11_11860 PF02779 Transketolase, pyrimidine binding domain FDP11_11860 PF02780 Transketolase, C-terminal domain FDP11_11865 PF00348 Polyprenyl synthetase FDP11_11870 PF02609 Exonuclease VII small subunit FDP11_11875 PF01618 MotA/TolQ/ExbB proton channel family FDP11_11880 PF00691 OmpA family FDP11_11885 PF02926 THUMP domain FDP11_11885 PF02568 Thiamine biosynthesis protein (ThiI) FDP11_11890 PF03466 LysR substrate binding domain FDP11_11890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_11900 PF04241 Protein of unknown function (DUF423) FDP11_11905 PF01728 FtsJ-like methyltransferase FDP11_11905 PF18125 RlmM ferredoxin-like domain FDP11_11910 PF01223 DNA/RNA non-specific endonuclease FDP11_11915 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain FDP11_11915 PF01367 5'-3' exonuclease, C-terminal SAM fold FDP11_11920 PF11892 Domain of unknown function (DUF3412) FDP11_11920 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases FDP11_11920 PF03641 Possible lysine decarboxylase FDP11_11925 PF00990 Diguanylate cyclase, GGDEF domain FDP11_11925 PF00072 Response regulator receiver domain FDP11_11935 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term FDP11_11935 PF14489 QueF-like protein FDP11_11940 PF07348 Syd protein (SUKH-2) FDP11_11945 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) FDP11_11950 PF03180 NLPA lipoprotein FDP11_11955 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_11960 PF09383 NIL domain FDP11_11960 PF00005 ABC transporter FDP11_11975 PF00356 Bacterial regulatory proteins, lacI family FDP11_11980 PF00367 phosphotransferase system, EIIB FDP11_11980 PF02378 Phosphotransferase system, EIIC FDP11_11985 PF16657 Maltogenic Amylase, C-terminal domain FDP11_11985 PF00128 Alpha amylase, catalytic domain FDP11_12000 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) FDP11_12000 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 FDP11_12005 PF00464 Serine hydroxymethyltransferase FDP11_12010 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family FDP11_12010 PF04055 Radical SAM superfamily FDP11_12015 PF03099 Biotin/lipoate A/B protein ligase family FDP11_12020 PF04359 Protein of unknown function (DUF493) FDP11_12025 PF07943 Penicillin-binding protein 5, C-terminal domain FDP11_12025 PF00768 D-alanyl-D-alanine carboxypeptidase FDP11_12030 PF05036 Sporulation related domain FDP11_12030 PF03330 Lytic transglycolase FDP11_12035 PF01098 Cell cycle protein FDP11_12040 PF03717 Penicillin-binding Protein dimerisation domain FDP11_12040 PF00905 Penicillin binding protein transpeptidase domain FDP11_12045 PF02590 Predicted SPOUT methyltransferase FDP11_12055 PF06144 DNA polymerase III, delta subunit FDP11_12055 PF14840 Processivity clamp loader gamma complex DNA pol III C-term FDP11_12060 PF04390 Lipopolysaccharide-assembly FDP11_12065 PF08264 Anticodon-binding domain of tRNA FDP11_12065 PF00133 tRNA synthetases class I (I, L, M and V) FDP11_12065 PF13603 Leucyl-tRNA synthetase, Domain 2 FDP11_12070 PF07295 Zinc-ribbon containing domain FDP11_12075 PF00795 Carbon-nitrogen hydrolase FDP11_12080 PF03471 Transporter associated domain FDP11_12080 PF00571 CBS domain FDP11_12085 PF02130 Uncharacterized protein family UPF0054 FDP11_12090 PF02562 PhoH-like protein FDP11_12095 PF00919 Uncharacterized protein family UPF0004 FDP11_12095 PF01938 TRAM domain FDP11_12095 PF04055 Radical SAM superfamily FDP11_12105 PF01494 FAD binding domain FDP11_12220 PF06071 Protein of unknown function (DUF933) FDP11_12220 PF01926 50S ribosome-binding GTPase FDP11_12225 PF01195 Peptidyl-tRNA hydrolase FDP11_12230 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase FDP11_12230 PF14572 Phosphoribosyl synthetase-associated domain FDP11_12235 PF00288 GHMP kinases N terminal domain FDP11_12235 PF08544 GHMP kinases C terminal FDP11_12240 PF03550 Outer membrane lipoprotein LolB FDP11_12245 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain FDP11_12245 PF01488 Shikimate / quinate 5-dehydrogenase FDP11_12245 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain FDP11_12250 PF03462 PCRF domain FDP11_12250 PF00472 RF-1 domain FDP11_12255 PF13847 Methyltransferase domain FDP11_12255 PF17827 PrmC N-terminal domain FDP11_12260 PF04247 Invasion gene expression up-regulator, SirB FDP11_12265 PF13369 Transglutaminase-like superfamily FDP11_12270 PF00793 DAHP synthetase I family FDP11_12275 PF00149 Calcineurin-like phosphoesterase FDP11_12275 PF02872 5'-nucleotidase, C-terminal domain FDP11_12280 PF04073 Aminoacyl-tRNA editing domain FDP11_12285 PF00849 RNA pseudouridylate synthase FDP11_12285 PF01479 S4 domain FDP11_12290 PF01713 Smr domain FDP11_12315 PF02838 Glycosyl hydrolase family 20, domain 2 FDP11_12315 PF03173 Putative carbohydrate binding domain FDP11_12315 PF00728 Glycosyl hydrolase family 20, catalytic domain FDP11_12315 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain FDP11_12330 PF00403 Heavy-metal-associated domain FDP11_12340 PF13609 Gram-negative porin FDP11_12345 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) FDP11_12350 PF00749 tRNA synthetases class I (E and Q), catalytic domain FDP11_12360 PF01389 OmpA-like transmembrane domain FDP11_12360 PF00691 OmpA family FDP11_12410 PF00072 Response regulator receiver domain FDP11_12410 PF01584 CheW-like domain FDP11_12415 PF01739 CheR methyltransferase, SAM binding domain FDP11_12415 PF03705 CheR methyltransferase, all-alpha domain FDP11_12420 PF00460 Flagella basal body rod protein FDP11_12425 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FDP11_12425 PF00460 Flagella basal body rod protein FDP11_12430 PF13861 FlgD Tudor-like domain FDP11_12430 PF13860 FlgD Ig-like domain FDP11_12430 PF03963 Flagellar hook capping protein - N-terminal region FDP11_12435 PF07559 Flagellar basal body protein FlaE FDP11_12435 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FDP11_12435 PF00460 Flagella basal body rod protein FDP11_12445 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FDP11_12445 PF00460 Flagella basal body rod protein FDP11_12450 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FDP11_12450 PF00460 Flagella basal body rod protein FDP11_12455 PF02107 Flagellar L-ring protein FDP11_12460 PF02119 Flagellar P-ring protein FDP11_12465 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase FDP11_12465 PF10135 Rod binding protein FDP11_12470 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FDP11_12470 PF07196 Flagellin hook IN motif FDP11_12475 PF00669 Bacterial flagellin N-terminal helical region FDP11_12485 PF00669 Bacterial flagellin N-terminal helical region FDP11_12485 PF07196 Flagellin hook IN motif FDP11_12485 PF00700 Bacterial flagellin C-terminal helical region FDP11_12495 PF00669 Bacterial flagellin N-terminal helical region FDP11_12495 PF07196 Flagellin hook IN motif FDP11_12495 PF00700 Bacterial flagellin C-terminal helical region FDP11_12500 PF07196 Flagellin hook IN motif FDP11_12500 PF00700 Bacterial flagellin C-terminal helical region FDP11_12500 PF00669 Bacterial flagellin N-terminal helical region FDP11_12510 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 FDP11_12515 PF05524 PEP-utilising enzyme, N-terminal FDP11_12515 PF00391 PEP-utilising enzyme, mobile domain FDP11_12515 PF02896 PEP-utilising enzyme, TIM barrel domain FDP11_12520 PF00381 PTS HPr component phosphorylation site FDP11_12530 PF00291 Pyridoxal-phosphate dependent enzyme FDP11_12540 PF04354 ZipA, C-terminal FtsZ-binding domain FDP11_12545 PF03119 NAD-dependent DNA ligase C4 zinc finger domain FDP11_12545 PF00533 BRCA1 C Terminus (BRCT) domain FDP11_12545 PF03120 NAD-dependent DNA ligase OB-fold domain FDP11_12545 PF12826 Helix-hairpin-helix motif FDP11_12545 PF01653 NAD-dependent DNA ligase adenylation domain FDP11_12560 PF03573 outer membrane porin, OprD family FDP11_12575 PF16200 C-terminal region of band_7 FDP11_12575 PF01145 SPFH domain / Band 7 family FDP11_12580 PF11658 Cellulose biosynthesis protein BcsG FDP11_12585 PF10995 Cellulose biosynthesis GIL FDP11_12595 PF06564 Cellulose biosynthesis protein BcsQ FDP11_12600 PF07238 PilZ domain FDP11_12600 PF00535 Glycosyl transferase family 2 FDP11_12600 PF03552 Cellulose synthase FDP11_12605 PF03170 Bacterial cellulose synthase subunit FDP11_12610 PF01270 Glycosyl hydrolases family 8 FDP11_12615 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) FDP11_12620 PF00085 Thioredoxin FDP11_12630 PF00106 short chain dehydrogenase FDP11_12635 PF01370 NAD dependent epimerase/dehydratase family FDP11_12635 PF08338 Domain of unknown function (DUF1731) FDP11_12640 PF07556 Protein of unknown function (DUF1538) FDP11_12645 PF07556 Protein of unknown function (DUF1538) FDP11_12665 PF12850 Calcineurin-like phosphoesterase superfamily domain FDP11_12680 PF17323 Trans-membrane regulatory protein ToxS FDP11_12685 PF00486 Transcriptional regulatory protein, C terminal FDP11_12690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_12690 PF00183 Hsp90 protein FDP11_12695 PF05191 Adenylate kinase, active site lid FDP11_12700 PF00762 Ferrochelatase FDP11_12705 PF00854 POT family FDP11_12710 PF02357 Transcription termination factor nusG FDP11_12715 PF00733 Asparagine synthase FDP11_12715 PF13537 Glutamine amidotransferase domain FDP11_12720 PF00999 Sodium/hydrogen exchanger family FDP11_12720 PF02254 TrkA-N domain FDP11_12725 PF00480 ROK family FDP11_12725 PF01047 MarR family FDP11_12730 PF01979 Amidohydrolase family FDP11_12740 PF02378 Phosphotransferase system, EIIC FDP11_12740 PF00367 phosphotransferase system, EIIB FDP11_12745 PF00749 tRNA synthetases class I (E and Q), catalytic domain FDP11_12745 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain FDP11_12750 PF01475 Ferric uptake regulator family FDP11_12760 PF00258 Flavodoxin FDP11_12770 PF12697 Alpha/beta hydrolase family FDP11_12775 PF03925 SeqA protein C-terminal domain FDP11_12775 PF17206 SeqA protein N-terminal domain FDP11_12780 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FDP11_12780 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FDP11_12780 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FDP11_12780 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FDP11_12790 PF01784 NIF3 (NGG1p interacting factor 3) FDP11_12795 PF00285 Citrate synthase, C-terminal domain FDP11_12800 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FDP11_12805 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FDP11_12810 PF02910 Fumarate reductase flavoprotein C-term FDP11_12810 PF00890 FAD binding domain FDP11_12815 PF13085 2Fe-2S iron-sulfur cluster binding domain FDP11_12820 PF16078 2-oxoglutarate dehydrogenase N-terminus FDP11_12820 PF00676 Dehydrogenase E1 component FDP11_12820 PF02779 Transketolase, pyrimidine binding domain FDP11_12820 PF16870 2-oxoglutarate dehydrogenase C-terminal FDP11_12825 PF00364 Biotin-requiring enzyme FDP11_12825 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FDP11_12825 PF02817 e3 binding domain FDP11_12830 PF08442 ATP-grasp domain FDP11_12830 PF00549 CoA-ligase FDP11_12835 PF02629 CoA binding domain FDP11_12835 PF00549 CoA-ligase FDP11_12840 PF00551 Formyl transferase FDP11_12845 PF02769 AIR synthase related protein, C-terminal domain FDP11_12845 PF00586 AIR synthase related protein, N-terminal domain FDP11_12855 PF00860 Permease family FDP11_12875 PF01435 Peptidase family M48 FDP11_12875 PF13181 Tetratricopeptide repeat FDP11_12885 PF01594 AI-2E family transporter FDP11_12890 PF00578 AhpC/TSA family FDP11_12895 PF01842 ACT domain FDP11_12900 PF00701 Dihydrodipicolinate synthetase family FDP11_12920 PF01546 Peptidase family M20/M25/M40 FDP11_12920 PF07687 Peptidase dimerisation domain FDP11_12925 PF03960 ArsC family FDP11_12950 PF11143 Protein of unknown function (DUF2919) FDP11_12955 PF04261 Dyp-type peroxidase family FDP11_12960 PF00700 Bacterial flagellin C-terminal helical region FDP11_12960 PF07196 Flagellin hook IN motif FDP11_12960 PF00669 Bacterial flagellin N-terminal helical region FDP11_12970 PF00700 Bacterial flagellin C-terminal helical region FDP11_12970 PF07196 Flagellin hook IN motif FDP11_12970 PF00669 Bacterial flagellin N-terminal helical region FDP11_12975 PF00669 Bacterial flagellin N-terminal helical region FDP11_12975 PF00700 Bacterial flagellin C-terminal helical region FDP11_12975 PF07196 Flagellin hook IN motif FDP11_12980 PF03646 FlaG protein FDP11_12985 PF07195 Flagellar hook-associated protein 2 C-terminus FDP11_12985 PF07196 Flagellin hook IN motif FDP11_12985 PF02465 Flagellar hook-associated protein 2 N-terminus FDP11_12995 PF02561 Flagellar protein FliS FDP11_13000 PF06490 Flagellar regulatory protein FleQ FDP11_13000 PF02954 Bacterial regulatory protein, Fis family FDP11_13000 PF00158 Sigma-54 interaction domain FDP11_13005 PF00512 His Kinase A (phospho-acceptor) domain FDP11_13005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_13010 PF02954 Bacterial regulatory protein, Fis family FDP11_13010 PF00158 Sigma-54 interaction domain FDP11_13010 PF00072 Response regulator receiver domain FDP11_13015 PF02049 Flagellar hook-basal body complex protein FliE FDP11_13020 PF01514 Secretory protein of YscJ/FliF family FDP11_13020 PF08345 Flagellar M-ring protein C-terminal FDP11_13025 PF14841 FliG middle domain FDP11_13025 PF14842 FliG N-terminal domain FDP11_13025 PF01706 FliG C-terminal domain FDP11_13035 PF18269 T3SS EscN ATPase C-terminal domain FDP11_13035 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FDP11_13055 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term FDP11_13055 PF02154 Flagellar motor switch protein FliM FDP11_13060 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term FDP11_13065 PF04347 Flagellar biosynthesis protein, FliO FDP11_13070 PF00813 FliP family FDP11_13075 PF01313 Bacterial export proteins, family 3 FDP11_13080 PF01311 Bacterial export proteins, family 1 FDP11_13085 PF01312 FlhB HrpN YscU SpaS Family FDP11_13090 PF00771 FHIPEP family FDP11_13095 PF00448 SRP54-type protein, GTPase domain FDP11_13100 PF10609 NUBPL iron-transfer P-loop NTPase FDP11_13105 PF04542 Sigma-70 region 2 FDP11_13105 PF04539 Sigma-70 region 3 FDP11_13105 PF04545 Sigma-70, region 4 FDP11_13110 PF00072 Response regulator receiver domain FDP11_13115 PF04344 Chemotaxis phosphatase, CheZ FDP11_13120 PF02895 Signal transducing histidine kinase, homodimeric domain FDP11_13120 PF01584 CheW-like domain FDP11_13120 PF00072 Response regulator receiver domain FDP11_13120 PF01627 Hpt domain FDP11_13120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_13125 PF00072 Response regulator receiver domain FDP11_13125 PF01339 CheB methylesterase FDP11_13130 PF13614 AAA domain FDP11_13140 PF01584 CheW-like domain FDP11_13150 PF00005 ABC transporter FDP11_13155 PF03379 CcmB protein FDP11_13160 PF01578 Cytochrome C assembly protein FDP11_13165 PF04995 Heme exporter protein D (CcmD) FDP11_13170 PF03100 CcmE FDP11_13175 PF01578 Cytochrome C assembly protein FDP11_13175 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal FDP11_13180 PF08534 Redoxin FDP11_13185 PF03918 Cytochrome C biogenesis protein FDP11_13195 PF04333 MlaA lipoprotein FDP11_13200 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) FDP11_13205 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) FDP11_13215 PF04542 Sigma-70 region 2 FDP11_13215 PF08281 Sigma-70, region 4 FDP11_13225 PF00108 Thiolase, N-terminal domain FDP11_13225 PF02803 Thiolase, C-terminal domain FDP11_13230 PF00378 Enoyl-CoA hydratase/isomerase FDP11_13230 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FDP11_13230 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FDP11_13240 PF05193 Peptidase M16 inactive domain FDP11_13240 PF00675 Insulinase (Peptidase family M16) FDP11_13240 PF16187 Middle or third domain of peptidase_M16 FDP11_13245 PF00300 Histidine phosphatase superfamily (branch 1) FDP11_13250 PF01713 Smr domain FDP11_13255 PF05175 Methyltransferase small domain FDP11_13260 PF01264 Chorismate synthase FDP11_13265 PF03458 UPF0126 domain FDP11_13275 PF04315 Elongation factor P hydroxylase FDP11_13280 PF08891 YfcL protein FDP11_13290 PF03358 NADPH-dependent FMN reductase FDP11_13295 PF01266 FAD dependent oxidoreductase FDP11_13295 PF05430 S-adenosyl-L-methionine-dependent methyltransferase FDP11_13300 PF00109 Beta-ketoacyl synthase, N-terminal domain FDP11_13300 PF02801 Beta-ketoacyl synthase, C-terminal domain FDP11_13310 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FDP11_13310 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FDP11_13310 PF11890 Domain of unknown function (DUF3410) FDP11_13315 PF01118 Semialdehyde dehydrogenase, NAD binding domain FDP11_13315 PF02774 Semialdehyde dehydrogenase, dimerisation domain FDP11_13325 PF01416 tRNA pseudouridine synthase FDP11_13330 PF17848 Acetyl-coA carboxylase zinc finger domain FDP11_13330 PF01039 Carboxyl transferase domain FDP11_13335 PF08245 Mur ligase middle domain FDP11_13335 PF02875 Mur ligase family, glutamate ligase domain FDP11_13340 PF05036 Sporulation related domain FDP11_13345 PF02674 Colicin V production protein FDP11_13350 PF00156 Phosphoribosyl transferase domain FDP11_13355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_13355 PF03466 LysR substrate binding domain FDP11_13360 PF00072 Response regulator receiver domain FDP11_13370 PF04304 Protein of unknown function (DUF454) FDP11_13375 PF00156 Phosphoribosyl transferase domain FDP11_13380 PF12170 DNA polymerase III tau subunit V interacting with alpha FDP11_13380 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding FDP11_13380 PF12169 DNA polymerase III subunits gamma and tau domain III FDP11_13385 PF02575 YbaB/EbfC DNA-binding family FDP11_13390 PF13662 Toprim domain FDP11_13390 PF02132 RecR protein FDP11_13395 PF00230 Major intrinsic protein FDP11_13405 PF01042 Endoribonuclease L-PSP FDP11_13410 PF03313 Serine dehydratase alpha chain FDP11_13420 PF03692 Putative zinc- or iron-chelating domain FDP11_13425 PF04226 Transglycosylase associated protein FDP11_13430 PF03692 Putative zinc- or iron-chelating domain FDP11_13435 PF00924 Mechanosensitive ion channel FDP11_13435 PF05552 Conserved TM helix FDP11_13440 PF03992 Antibiotic biosynthesis monooxygenase FDP11_13445 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FDP11_13455 PF00245 Alkaline phosphatase FDP11_13475 PF13847 Methyltransferase domain FDP11_13480 PF02743 Cache domain FDP11_13480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDP11_13480 PF00672 HAMP domain FDP11_13485 PF01263 Aldose 1-epimerase FDP11_13490 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FDP11_13490 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FDP11_13495 PF01641 SelR domain FDP11_13505 PF07023 Protein of unknown function (DUF1315) FDP11_13510 PF17763 Glutaminase/Asparaginase C-terminal domain FDP11_13510 PF00710 Asparaginase, N-terminal FDP11_13515 PF01343 Peptidase family S49 FDP11_13520 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FDP11_13520 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDP11_13525 PF00881 Nitroreductase family FDP11_13530 PF01751 Toprim domain FDP11_13530 PF01131 DNA topoisomerase FDP11_13545 PF00106 short chain dehydrogenase FDP11_13550 PF00850 Histone deacetylase domain FDP11_13560 PF11893 Domain of unknown function (DUF3413) FDP11_13560 PF00884 Sulfatase FDP11_13565 PF07208 Protein of unknown function (DUF1414) FDP11_13570 PF04245 37-kD nucleoid-associated bacterial protein FDP11_13585 PF03553 Na+/H+ antiporter family FDP11_13590 PF02774 Semialdehyde dehydrogenase, dimerisation domain FDP11_13590 PF01118 Semialdehyde dehydrogenase, NAD binding domain FDP11_13595 PF00520 Ion transport protein FDP11_13595 PF00027 Cyclic nucleotide-binding domain FDP11_13600 PF01914 MarC family integral membrane protein FDP11_13605 PF00171 Aldehyde dehydrogenase family FDP11_13605 PF00465 Iron-containing alcohol dehydrogenase FDP11_13620 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain FDP11_13620 PF02777 Iron/manganese superoxide dismutases, C-terminal domain FDP11_13625 PF00462 Glutaredoxin FDP11_13635 PF03553 Na+/H+ antiporter family FDP11_13635 PF13726 Na+-H+ antiporter family FDP11_13640 PF00929 Exonuclease FDP11_13655 PF18393 MotY N-terminal domain FDP11_13655 PF00691 OmpA family FDP11_13660 PF10952 Protein of unknown function (DUF2753) FDP11_13665 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FDP11_13670 PF10576 Iron-sulfur binding domain of endonuclease III FDP11_13670 PF00730 HhH-GPD superfamily base excision DNA repair protein FDP11_13670 PF00633 Helix-hairpin-helix motif FDP11_13675 PF02508 Rnf-Nqr subunit, membrane protein FDP11_13680 PF04205 FMN-binding domain FDP11_13685 PF03116 NQR2, RnfD, RnfE family FDP11_13690 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit FDP11_13690 PF12838 4Fe-4S dicluster domain FDP11_13690 PF13375 RnfC Barrel sandwich hybrid domain FDP11_13690 PF10531 SLBB domain FDP11_13695 PF04060 Putative Fe-S cluster FDP11_13700 PF02508 Rnf-Nqr subunit, membrane protein FDP11_13715 PF03372 Endonuclease/Exonuclease/phosphatase family FDP11_13720 PF10689 Protein of unknown function (DUF2496) FDP11_13725 PF07445 Primosomal replication protein priC FDP11_13730 PF01925 Sulfite exporter TauE/SafE FDP11_13735 PF06733 DEAD_2 FDP11_13735 PF13307 Helicase C-terminal domain FDP11_13745 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) FDP11_13750 PF00849 RNA pseudouridylate synthase FDP11_13755 PF03971 Monomeric isocitrate dehydrogenase FDP11_13760 PF00313 'Cold-shock' DNA-binding domain FDP11_13765 PF02617 ATP-dependent Clp protease adaptor protein ClpS FDP11_13770 PF00004 ATPase family associated with various cellular activities (AAA) FDP11_13770 PF10431 C-terminal, D2-small domain, of ClpB protein FDP11_13770 PF07724 AAA domain (Cdc48 subfamily) FDP11_13770 PF02861 Clp amino terminal domain, pathogenicity island component FDP11_13770 PF17871 AAA lid domain FDP11_13780 PF01176 Translation initiation factor 1A / IF-1 FDP11_13785 PF04377 Arginine-tRNA-protein transferase, C terminus FDP11_13785 PF04376 Arginine-tRNA-protein transferase, N terminus FDP11_13790 PF03588 Leucyl/phenylalanyl-tRNA protein transferase FDP11_13800 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FDP11_13805 PF10692 Protein of unknown function (DUF2498) FDP11_13810 PF01396 Topoisomerase DNA binding C4 zinc finger FDP11_13810 PF01131 DNA topoisomerase FDP11_13810 PF01751 Toprim domain FDP11_13810 PF08272 Topoisomerase I zinc-ribbon-like FDP11_13815 PF00483 Nucleotidyl transferase FDP11_13820 PF00534 Glycosyl transferases group 1 FDP11_13820 PF08323 Starch synthase catalytic domain FDP11_13840 PF04994 TfoX C-terminal domain FDP11_13840 PF04993 TfoX N-terminal domain FDP11_13845 PF00356 Bacterial regulatory proteins, lacI family FDP11_13850 PF02613 Nitrate reductase delta subunit FDP11_13855 PF00486 Transcriptional regulatory protein, C terminal FDP11_13855 PF00072 Response regulator receiver domain FDP11_13860 PF02698 DUF218 domain FDP11_13865 PF13847 Methyltransferase domain FDP11_13870 PF03882 MukF winged-helix domain FDP11_13870 PF17192 MukF middle domain FDP11_13870 PF17193 MukF C-terminal domain FDP11_13875 PF04288 MukE-like family FDP11_13880 PF04310 MukB N-terminal FDP11_13880 PF16330 MukB hinge domain FDP11_13890 PF08443 RimK-like ATP-grasp domain FDP11_13890 PF18030 RimK PreATP-grasp domain FDP11_13900 PF08443 RimK-like ATP-grasp domain FDP11_13900 PF18030 RimK PreATP-grasp domain FDP11_13910 PF08003 Protein of unknown function (DUF1698) FDP11_13915 PF13649 Methyltransferase domain FDP11_13920 PF01904 Protein of unknown function DUF72 FDP11_13925 PF00152 tRNA synthetases class II (D, K and N) FDP11_13925 PF02938 GAD domain FDP11_13925 PF01336 OB-fold nucleic acid binding domain FDP11_13930 PF02075 Crossover junction endodeoxyribonuclease RuvC FDP11_13935 PF02203 Tar ligand binding domain homologue FDP11_13935 PF00672 HAMP domain FDP11_13935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDP11_13940 PF01330 RuvA N terminal domain FDP11_13940 PF07499 RuvA, C-terminal domain FDP11_13945 PF17864 RuvB AAA lid domain FDP11_13945 PF05496 Holliday junction DNA helicase RuvB P-loop domain FDP11_13945 PF05491 RuvB C-terminal winged helix domain FDP11_13950 PF01654 Cytochrome bd terminal oxidase subunit I FDP11_13955 PF02322 Cytochrome bd terminal oxidase subunit II FDP11_13960 PF08173 Membrane bound YbgT-like protein FDP11_13970 PF03061 Thioesterase superfamily FDP11_13975 PF01618 MotA/TolQ/ExbB proton channel family FDP11_13980 PF02472 Biopolymer transport protein ExbD/TolR FDP11_13990 PF07676 WD40-like Beta Propeller Repeat FDP11_13990 PF04052 TolB amino-terminal domain FDP11_13995 PF00691 OmpA family FDP11_14000 PF13174 Tetratricopeptide repeat FDP11_14000 PF16331 TolA binding protein trimerisation FDP11_14005 PF01207 Dihydrouridine synthase (Dus) FDP11_14010 PF07516 SecA Wing and Scaffold domain FDP11_14010 PF01043 SecA preprotein cross-linking domain FDP11_14010 PF07517 SecA DEAD-like domain FDP11_14010 PF02810 SEC-C motif FDP11_14015 PF02600 Disulfide bond formation protein DsbB FDP11_14020 PF06450 Bacterial Na+/H+ antiporter B (NhaB) FDP11_14025 PF00392 Bacterial regulatory proteins, gntR family FDP11_14025 PF07840 FadR C-terminal domain FDP11_14035 PF01588 Putative tRNA binding domain FDP11_14035 PF09334 tRNA synthetases class I (M) FDP11_14040 PF10609 NUBPL iron-transfer P-loop NTPase FDP11_14045 PF00485 Phosphoribulokinase / Uridine kinase family FDP11_14055 PF12557 Cob(I)alamin adenosyltransferase N terminal FDP11_14055 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP FDP11_14060 PF01451 Low molecular weight phosphotyrosine protein phosphatase FDP11_14065 PF01740 STAS domain FDP11_14065 PF00916 Sulfate permease family FDP11_14075 PF10150 Ribonuclease E/G family FDP11_14075 PF00575 S1 RNA binding domain FDP11_14075 PF12111 Polyribonucleotide phosphorylase C terminal FDP11_14090 PF01479 S4 domain FDP11_14090 PF00849 RNA pseudouridylate synthase FDP11_14095 PF02545 Maf-like protein FDP11_14100 PF02620 Large ribosomal RNA subunit accumulation protein YceD FDP11_14105 PF01783 Ribosomal L32p protein family FDP11_14110 PF02504 Fatty acid synthesis protein FDP11_14115 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FDP11_14115 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FDP11_14120 PF00698 Acyl transferase domain FDP11_14130 PF00550 Phosphopantetheine attachment site FDP11_14135 PF02801 Beta-ketoacyl synthase, C-terminal domain FDP11_14135 PF00109 Beta-ketoacyl synthase, N-terminal domain FDP11_14140 PF01063 Amino-transferase class IV FDP11_14145 PF02618 YceG-like family FDP11_14150 PF02223 Thymidylate kinase FDP11_14155 PF09115 DNA polymerase III, delta subunit, C terminal FDP11_14160 PF01026 TatD related DNase FDP11_14165 PF02378 Phosphotransferase system, EIIC FDP11_14165 PF00367 phosphotransferase system, EIIB FDP11_14185 PF00209 Sodium:neurotransmitter symporter family FDP11_14200 PF01734 Patatin-like phospholipase FDP11_14205 PF00224 Pyruvate kinase, barrel domain FDP11_14205 PF02887 Pyruvate kinase, alpha/beta domain FDP11_14210 PF00480 ROK family FDP11_14215 PF01584 CheW-like domain FDP11_14215 PF00072 Response regulator receiver domain FDP11_14220 PF07733 Bacterial DNA polymerase III alpha NTPase domain FDP11_14220 PF02811 PHP domain FDP11_14220 PF01336 OB-fold nucleic acid binding domain FDP11_14220 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FDP11_14220 PF14579 Helix-hairpin-helix motif FDP11_14235 PF00106 short chain dehydrogenase FDP11_14240 PF01343 Peptidase family S49 FDP11_14240 PF08496 Peptidase family S49 N-terminal FDP11_14245 PF02224 Cytidylate kinase FDP11_14250 PF00575 S1 RNA binding domain FDP11_14255 PF00216 Bacterial DNA-binding protein FDP11_14260 PF06305 Lipopolysaccharide assembly protein A domain FDP11_14265 PF18073 Rubredoxin metal binding domain FDP11_14270 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family FDP11_14275 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FDP11_14285 PF01370 NAD dependent epimerase/dehydratase family FDP11_14290 PF00535 Glycosyl transferase family 2 FDP11_14300 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase FDP11_14310 PF02470 MlaD protein FDP11_14315 PF04403 Paraquat-inducible protein A FDP11_14320 PF13442 Cytochrome C oxidase, cbb3-type, subunit III FDP11_14325 PF00034 Cytochrome c FDP11_14335 PF03916 Polysulphide reductase, NrfD FDP11_14340 PF13247 4Fe-4S dicluster domain FDP11_14345 PF00512 His Kinase A (phospho-acceptor) domain FDP11_14345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_14350 PF00072 Response regulator receiver domain FDP11_14350 PF00196 Bacterial regulatory proteins, luxR family FDP11_14355 PF03466 LysR substrate binding domain FDP11_14355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_14365 PF02683 Cytochrome C biogenesis protein transmembrane region FDP11_14365 PF11412 Disulphide bond corrector protein DsbC FDP11_14370 PF00085 Thioredoxin FDP11_14385 PF05958 tRNA (Uracil-5-)-methyltransferase FDP11_14385 PF01938 TRAM domain FDP11_14400 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDP11_14410 PF02687 FtsX-like permease family FDP11_14410 PF12704 MacB-like periplasmic core domain FDP11_14410 PF00005 ABC transporter FDP11_14415 PF00005 ABC transporter FDP11_14415 PF02687 FtsX-like permease family FDP11_14415 PF12704 MacB-like periplasmic core domain FDP11_14420 PF02687 FtsX-like permease family FDP11_14420 PF12704 MacB-like periplasmic core domain FDP11_14420 PF00005 ABC transporter FDP11_14425 PF00857 Isochorismatase family FDP11_14430 PF12833 Helix-turn-helix domain FDP11_14430 PF02311 AraC-like ligand binding domain FDP11_14440 PF01717 Cobalamin-independent synthase, Catalytic domain FDP11_14440 PF08267 Cobalamin-independent synthase, N-terminal domain FDP11_14445 PF02698 DUF218 domain FDP11_14470 PF01226 Formate/nitrite transporter FDP11_14480 PF03649 Uncharacterised protein family (UPF0014) FDP11_14485 PF06796 Periplasmic nitrate reductase protein NapE FDP11_14490 PF03264 NapC/NirT cytochrome c family, N-terminal region FDP11_14495 PF00384 Molybdopterin oxidoreductase FDP11_14495 PF18364 Molybdopterin oxidoreductase N-terminal domain FDP11_14495 PF01568 Molydopterin dinucleotide binding domain FDP11_14500 PF16874 Glycosyl hydrolase family 36 C-terminal domain FDP11_14500 PF16875 Glycosyl hydrolase family 36 N-terminal domain FDP11_14510 PF02833 DHHA2 domain FDP11_14510 PF01368 DHH family FDP11_14520 PF00005 ABC transporter FDP11_14525 PF00005 ABC transporter FDP11_14525 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FDP11_14530 PF12911 N-terminal TM domain of oligopeptide transport permease C FDP11_14530 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_14535 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_14540 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FDP11_14545 PF00158 Sigma-54 interaction domain FDP11_14545 PF02954 Bacterial regulatory protein, Fis family FDP11_14550 PF04012 PspA/IM30 family FDP11_14555 PF06667 Phage shock protein B FDP11_14560 PF04024 PspC domain FDP11_14565 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDP11_14575 PF00873 AcrB/AcrD/AcrF family FDP11_14580 PF03352 Methyladenine glycosylase FDP11_14585 PF03280 Proteobacterial lipase chaperone protein FDP11_14590 PF00561 alpha/beta hydrolase fold FDP11_14595 PF01053 Cys/Met metabolism PLP-dependent enzyme FDP11_14600 PF13091 PLD-like domain FDP11_14600 PF13396 Phospholipase_D-nuclease N-terminal FDP11_14605 PF00209 Sodium:neurotransmitter symporter family FDP11_14610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDP11_14610 PF00672 HAMP domain FDP11_14610 PF12729 Four helix bundle sensory module for signal transduction FDP11_14615 PF00849 RNA pseudouridylate synthase FDP11_14625 PF00970 Oxidoreductase FAD-binding domain FDP11_14625 PF00175 Oxidoreductase NAD-binding domain FDP11_14625 PF00111 2Fe-2S iron-sulfur cluster binding domain FDP11_14630 PF03063 Prismane/CO dehydrogenase family FDP11_14635 PF00158 Sigma-54 interaction domain FDP11_14635 PF01590 GAF domain FDP11_14650 PF01066 CDP-alcohol phosphatidyltransferase FDP11_14655 PF00005 ABC transporter FDP11_14660 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_14665 PF13416 Bacterial extracellular solute-binding protein FDP11_14670 PF09335 SNARE associated Golgi protein FDP11_14680 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster FDP11_14680 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDP11_14690 PF00512 His Kinase A (phospho-acceptor) domain FDP11_14690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_14695 PF00072 Response regulator receiver domain FDP11_14695 PF00196 Bacterial regulatory proteins, luxR family FDP11_14705 PF06945 Protein of unknown function (DUF1289) FDP11_14720 PF02872 5'-nucleotidase, C-terminal domain FDP11_14720 PF00149 Calcineurin-like phosphoesterase FDP11_14735 PF01386 Ribosomal L25p family FDP11_14740 PF00512 His Kinase A (phospho-acceptor) domain FDP11_14740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_14740 PF00672 HAMP domain FDP11_14745 PF00072 Response regulator receiver domain FDP11_14745 PF00486 Transcriptional regulatory protein, C terminal FDP11_14755 PF04851 Type III restriction enzyme, res subunit FDP11_14755 PF00271 Helicase conserved C-terminal domain FDP11_14760 PF01479 S4 domain FDP11_14760 PF00849 RNA pseudouridylate synthase FDP11_14765 PF07690 Major Facilitator Superfamily FDP11_14780 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) FDP11_14795 PF03264 NapC/NirT cytochrome c family, N-terminal region FDP11_14800 PF11066 Protein of unknown function (DUF2867) FDP11_14800 PF13460 NAD(P)H-binding FDP11_14805 PF01554 MatE FDP11_14810 PF00005 ABC transporter FDP11_14825 PF06965 Na+/H+ antiporter 1 FDP11_14830 PF00440 Bacterial regulatory proteins, tetR family FDP11_14830 PF16295 Tetracyclin repressor-like, C-terminal domain FDP11_14835 PF09317 Domain of unknown function (DUF1974) FDP11_14835 PF02770 Acyl-CoA dehydrogenase, middle domain FDP11_14835 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDP11_14835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDP11_14840 PF07055 Enoyl reductase FAD binding domain FDP11_14840 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase FDP11_14840 PF12241 Trans-2-enoyl-CoA reductase catalytic region FDP11_14845 PF06826 Predicted Permease Membrane Region FDP11_14845 PF02080 TrkA-C domain FDP11_14850 PF00462 Glutaredoxin FDP11_14860 PF00465 Iron-containing alcohol dehydrogenase FDP11_14865 PF01380 SIS domain FDP11_14865 PF01418 Helix-turn-helix domain, rpiR family FDP11_14870 PF00282 Pyridoxal-dependent decarboxylase conserved domain FDP11_14880 PF03956 Lysine exporter LysO FDP11_14900 PF04993 TfoX N-terminal domain FDP11_14900 PF04994 TfoX C-terminal domain FDP11_14915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_14915 PF00512 His Kinase A (phospho-acceptor) domain FDP11_14915 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDP11_14925 PF00266 Aminotransferase class-V FDP11_14930 PF00291 Pyridoxal-phosphate dependent enzyme FDP11_14935 PF00005 ABC transporter FDP11_14935 PF00664 ABC transporter transmembrane region FDP11_14940 PF00664 ABC transporter transmembrane region FDP11_14940 PF00005 ABC transporter FDP11_14945 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDP11_14955 PF00266 Aminotransferase class-V FDP11_14965 PF00990 Diguanylate cyclase, GGDEF domain FDP11_14965 PF00072 Response regulator receiver domain FDP11_14970 PF00939 Sodium:sulfate symporter transmembrane region FDP11_14975 PF02698 DUF218 domain FDP11_14980 PF03949 Malic enzyme, NAD binding domain FDP11_14980 PF00390 Malic enzyme, N-terminal domain FDP11_14985 PF00270 DEAD/DEAH box helicase FDP11_14985 PF11898 Domain of unknown function (DUF3418) FDP11_14985 PF04408 Helicase associated domain (HA2) FDP11_14985 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold FDP11_14985 PF00271 Helicase conserved C-terminal domain FDP11_14990 PF02253 Phospholipase A1 FDP11_15000 PF16655 PhoD-like phosphatase, N-terminal domain FDP11_15000 PF09423 PhoD-like phosphatase FDP11_15005 PF01259 SAICAR synthetase FDP11_15025 PF00691 OmpA family FDP11_15025 PF05736 OprF membrane domain FDP11_15040 PF02913 FAD linked oxidases, C-terminal domain FDP11_15040 PF01565 FAD binding domain FDP11_15040 PF13183 4Fe-4S dicluster domain FDP11_15045 PF04191 Phospholipid methyltransferase FDP11_15055 PF00221 Aromatic amino acid lyase FDP11_15060 PF17392 Urocanase C-terminal domain FDP11_15060 PF17391 Urocanase N-terminal domain FDP11_15060 PF01175 Urocanase Rossmann-like domain FDP11_15065 PF00491 Arginase family FDP11_15070 PF01979 Amidohydrolase family FDP11_15075 PF07702 UTRA domain FDP11_15075 PF00392 Bacterial regulatory proteins, gntR family FDP11_15090 PF03129 Anticodon binding domain FDP11_15090 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FDP11_15090 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FDP11_15090 PF02824 TGS domain FDP11_15095 PF05198 Translation initiation factor IF-3, N-terminal domain FDP11_15095 PF00707 Translation initiation factor IF-3, C-terminal domain FDP11_15100 PF01632 Ribosomal protein L35 FDP11_15105 PF00453 Ribosomal protein L20 FDP11_15110 PF01906 Putative heavy-metal-binding FDP11_15140 PF00990 Diguanylate cyclase, GGDEF domain FDP11_15140 PF17158 Membrane-associated sensor, integral membrane domain FDP11_15145 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain FDP11_15145 PF01409 tRNA synthetases class II core domain (F) FDP11_15150 PF03484 tRNA synthetase B5 domain FDP11_15150 PF03147 Ferredoxin-fold anticodon binding domain FDP11_15150 PF01588 Putative tRNA binding domain FDP11_15150 PF03483 B3/4 domain FDP11_15150 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain FDP11_15165 PF00216 Bacterial DNA-binding protein FDP11_15175 PF05724 Thiopurine S-methyltransferase (TPMT) FDP11_15180 PF02222 ATP-grasp domain FDP11_15185 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FDP11_15185 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region FDP11_15190 PF04172 LrgB-like family FDP11_15195 PF03788 LrgA family FDP11_15200 PF08411 Exonuclease C-terminal FDP11_15200 PF00929 Exonuclease FDP11_15210 PF13460 NAD(P)H-binding FDP11_15215 PF02277 Phosphoribosyltransferase FDP11_15220 PF02654 Cobalamin-5-phosphate synthase FDP11_15225 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase FDP11_15245 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family FDP11_15250 PF01032 FecCD transport family FDP11_15255 PF00005 ABC transporter FDP11_15275 PF03466 LysR substrate binding domain FDP11_15275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_15285 PF01863 Protein of unknown function DUF45 FDP11_15290 PF05971 RNA methyltransferase FDP11_15310 PF00392 Bacterial regulatory proteins, gntR family FDP11_15315 PF00171 Aldehyde dehydrogenase family FDP11_15320 PF05544 Proline racemase FDP11_15340 PF02423 Ornithine cyclodeaminase/mu-crystallin family FDP11_15345 PF00701 Dihydrodipicolinate synthetase family FDP11_15350 PF00005 ABC transporter FDP11_15350 PF08402 TOBE domain FDP11_15355 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_15360 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_15375 PF01752 Collagenase FDP11_15375 PF08453 Peptidase family M9 N-terminal FDP11_15390 PF00005 ABC transporter FDP11_15390 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FDP11_15395 PF00005 ABC transporter FDP11_15395 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FDP11_15400 PF12911 N-terminal TM domain of oligopeptide transport permease C FDP11_15400 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_15405 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_15410 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FDP11_15415 PF07687 Peptidase dimerisation domain FDP11_15415 PF01546 Peptidase family M20/M25/M40 FDP11_15425 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FDP11_15430 PF04209 homogentisate 1,2-dioxygenase FDP11_15440 PF14497 Glutathione S-transferase, C-terminal domain FDP11_15440 PF02798 Glutathione S-transferase, N-terminal domain FDP11_15495 PF01381 Helix-turn-helix FDP11_15495 PF00717 Peptidase S24-like FDP11_15550 PF00313 'Cold-shock' DNA-binding domain FDP11_15555 PF17876 Cold shock domain FDP11_15555 PF08461 Ribonuclease R winged-helix domain FDP11_15555 PF08206 Ribonuclease B OB domain FDP11_15555 PF00773 RNB domain FDP11_15555 PF00575 S1 RNA binding domain FDP11_15580 PF07411 Domain of unknown function (DUF1508) FDP11_15595 PF02195 ParB-like nuclease domain FDP11_15605 PF04466 Phage terminase large subunit FDP11_15605 PF17288 Terminase RNAseH like domain FDP11_15755 PF01810 LysE type translocator FDP11_15800 PF01810 LysE type translocator FDP11_15825 PF03553 Na+/H+ antiporter family FDP11_15830 PF00120 Glutamine synthetase, catalytic domain FDP11_15840 PF07722 Peptidase C26 FDP11_15845 PF01381 Helix-turn-helix FDP11_15845 PF07883 Cupin domain FDP11_15850 PF00171 Aldehyde dehydrogenase family FDP11_15855 PF01266 FAD dependent oxidoreductase FDP11_15860 PF00795 Carbon-nitrogen hydrolase FDP11_15865 PF04371 Porphyromonas-type peptidyl-arginine deiminase FDP11_15870 PF00171 Aldehyde dehydrogenase family FDP11_15875 PF00202 Aminotransferase class-III FDP11_15880 PF02833 DHHA2 domain FDP11_15880 PF01368 DHH family FDP11_15890 PF00196 Bacterial regulatory proteins, luxR family FDP11_15890 PF00563 EAL domain FDP11_15905 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FDP11_15905 PF01411 tRNA synthetases class II (A) FDP11_15905 PF02272 DHHA1 domain FDP11_15910 PF12833 Helix-turn-helix domain FDP11_15920 PF01047 MarR family FDP11_15925 PF04237 YjbR FDP11_15935 PF01928 CYTH domain FDP11_15945 PF12464 Maltose acetyltransferase FDP11_15945 PF00132 Bacterial transferase hexapeptide (six repeats) FDP11_15960 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FDP11_15960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_15960 PF01627 Hpt domain FDP11_15960 PF00512 His Kinase A (phospho-acceptor) domain FDP11_15960 PF00672 HAMP domain FDP11_15960 PF00072 Response regulator receiver domain FDP11_15965 PF03707 Bacterial signalling protein N terminal repeat FDP11_15965 PF00990 Diguanylate cyclase, GGDEF domain FDP11_15965 PF00563 EAL domain FDP11_15980 PF04204 Homoserine O-succinyltransferase FDP11_15995 PF13520 Amino acid permease FDP11_16005 PF03279 Bacterial lipid A biosynthesis acyltransferase FDP11_16010 PF02074 Carboxypeptidase Taq (M32) metallopeptidase FDP11_16015 PF01810 LysE type translocator FDP11_16025 PF01235 Sodium:alanine symporter family FDP11_16050 PF00884 Sulfatase FDP11_16055 PF00512 His Kinase A (phospho-acceptor) domain FDP11_16055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_16055 PF08521 Two-component sensor kinase N-terminal FDP11_16060 PF00072 Response regulator receiver domain FDP11_16060 PF00486 Transcriptional regulatory protein, C terminal FDP11_16080 PF00501 AMP-binding enzyme FDP11_16090 PF04069 Substrate binding domain of ABC-type glycine betaine transport system FDP11_16095 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_16100 PF00005 ABC transporter FDP11_16100 PF00571 CBS domain FDP11_16115 PF02028 BCCT, betaine/carnitine/choline family transporter FDP11_16120 PF00583 Acetyltransferase (GNAT) family FDP11_16125 PF00202 Aminotransferase class-III FDP11_16130 PF06339 Ectoine synthase FDP11_16135 PF00696 Amino acid kinase family FDP11_16135 PF13840 ACT domain FDP11_16155 PF03150 Di-haem cytochrome c peroxidase FDP11_16155 PF00034 Cytochrome c FDP11_16170 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDP11_16185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_16185 PF17203 Single cache domain 3 FDP11_16185 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain FDP11_16185 PF00989 PAS fold FDP11_16190 PF00072 Response regulator receiver domain FDP11_16190 PF12431 Transcriptional regulator FDP11_16195 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain FDP11_16195 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain FDP11_16200 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase FDP11_16205 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FDP11_16205 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain FDP11_16230 PF02954 Bacterial regulatory protein, Fis family FDP11_16230 PF01590 GAF domain FDP11_16230 PF00158 Sigma-54 interaction domain FDP11_16235 PF00171 Aldehyde dehydrogenase family FDP11_16255 PF12833 Helix-turn-helix domain FDP11_16270 PF03958 Bacterial type II/III secretion system short domain FDP11_16270 PF00263 Bacterial type II and III secretion system protein FDP11_16275 PF16693 Inner membrane component of T3SS, periplasmic domain FDP11_16275 PF16697 Inner membrane component of T3SS, cytoplasmic domain FDP11_16285 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF FDP11_16290 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) FDP11_16300 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI FDP11_16305 PF01514 Secretory protein of YscJ/FliF family FDP11_16315 PF02108 Flagellar assembly protein FliH FDP11_16325 PF02661 Fic/DOC family FDP11_16365 PF12146 Serine aminopeptidase, S33 FDP11_16370 PF12146 Serine aminopeptidase, S33 FDP11_16375 PF03466 LysR substrate binding domain FDP11_16375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_16380 PF01312 FlhB HrpN YscU SpaS Family FDP11_16385 PF01311 Bacterial export proteins, family 1 FDP11_16390 PF01313 Bacterial export proteins, family 3 FDP11_16395 PF00813 FliP family FDP11_16400 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term FDP11_16415 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FDP11_16415 PF18269 T3SS EscN ATPase C-terminal domain FDP11_16415 PF02874 ATP synthase alpha/beta family, beta-barrel domain FDP11_16420 PF07201 HrpJ-like domain FDP11_16425 PF09059 TyeA FDP11_16445 PF00771 FHIPEP family FDP11_16450 PF09621 Type III secretion system regulator (LcrR) FDP11_16455 PF07216 LcrG protein FDP11_16460 PF04792 V antigen (LcrV) protein FDP11_16465 PF07720 Tetratricopeptide repeat FDP11_16475 PF05844 YopD protein FDP11_16485 PF01925 Sulfite exporter TauE/SafE FDP11_16490 PF01970 Tripartite tricarboxylate transporter TctA family FDP11_16520 PF00285 Citrate synthase, C-terminal domain FDP11_16525 PF00694 Aconitase C-terminal domain FDP11_16525 PF00330 Aconitase family (aconitate hydratase) FDP11_16530 PF04303 PrpF protein FDP11_16535 PF13193 AMP-binding enzyme C-terminal domain FDP11_16535 PF00501 AMP-binding enzyme FDP11_16535 PF16177 Acetyl-coenzyme A synthetase N-terminus FDP11_16540 PF00583 Acetyltransferase (GNAT) family FDP11_16545 PF00089 Trypsin FDP11_16560 PF04055 Radical SAM superfamily FDP11_16565 PF06508 Queuosine biosynthesis protein QueC FDP11_16570 PF17158 Membrane-associated sensor, integral membrane domain FDP11_16570 PF00990 Diguanylate cyclase, GGDEF domain FDP11_16580 PF05736 OprF membrane domain FDP11_16580 PF00691 OmpA family FDP11_16595 PF00691 OmpA family FDP11_16595 PF05736 OprF membrane domain FDP11_16610 PF10672 S-adenosylmethionine-dependent methyltransferase FDP11_16610 PF17785 PUA-like domain FDP11_16615 PF00672 HAMP domain FDP11_16615 PF02743 Cache domain FDP11_16615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDP11_16620 PF00708 Acylphosphatase FDP11_16625 PF04358 DsrC like protein FDP11_16635 PF01027 Inhibitor of apoptosis-promoting Bax1 FDP11_16640 PF00005 ABC transporter FDP11_16645 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_16650 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_16655 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDP11_16665 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FDP11_16665 PF14824 Sirohaem biosynthesis protein central FDP11_16665 PF10414 Sirohaem synthase dimerisation region FDP11_16675 PF04461 Protein of unknown function (DUF520) FDP11_16680 PF00793 DAHP synthetase I family FDP11_16700 PF01189 16S rRNA methyltransferase RsmB/F FDP11_16700 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF FDP11_16700 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF FDP11_16710 PF02470 MlaD protein FDP11_16715 PF04403 Paraquat-inducible protein A FDP11_16720 PF00005 ABC transporter FDP11_16720 PF00664 ABC transporter transmembrane region FDP11_16725 PF13185 GAF domain FDP11_16730 PF17516 ProQ C-terminal domain FDP11_16730 PF04352 ProQ/FINO family FDP11_16735 PF00595 PDZ domain FDP11_16735 PF17804 Tail specific protease N-terminal domain FDP11_16735 PF11818 C-terminal domain of tail specific protease (DUF3340) FDP11_16735 PF03572 Peptidase family S41 FDP11_16745 PF17432 Domain of unknown function (DUF3458_C) ARM repeats FDP11_16745 PF01433 Peptidase family M1 domain FDP11_16745 PF11940 Domain of unknown function (DUF3458) Ig-like fold FDP11_16755 PF05088 Bacterial NAD-glutamate dehydrogenase FDP11_16760 PF01180 Dihydroorotate dehydrogenase FDP11_16765 PF07126 Cell-division protein ZapC FDP11_16775 PF10672 S-adenosylmethionine-dependent methyltransferase FDP11_16775 PF01170 Putative RNA methylase family UPF0020 FDP11_16775 PF02926 THUMP domain FDP11_16795 PF04957 Ribosome modulation factor FDP11_16800 PF07977 FabA-like domain FDP11_16805 PF05362 Lon protease (S16) C-terminal proteolytic domain FDP11_16805 PF13654 AAA domain FDP11_16810 PF06303 MatP N-terminal domain FDP11_16810 PF17414 MatP C-terminal ribbon-helix-helix domain FDP11_16860 PF00072 Response regulator receiver domain FDP11_16860 PF09308 LuxQ, periplasmic FDP11_16860 PF00512 His Kinase A (phospho-acceptor) domain FDP11_16860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_16875 PF00115 Cytochrome C and Quinol oxidase polypeptide I FDP11_16890 PF13442 Cytochrome C oxidase, cbb3-type, subunit III FDP11_16890 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP FDP11_16900 PF00403 Heavy-metal-associated domain FDP11_16915 PF13545 Crp-like helix-turn-helix domain FDP11_16915 PF00027 Cyclic nucleotide-binding domain FDP11_16920 PF00582 Universal stress protein family FDP11_16930 PF01171 PP-loop family FDP11_16950 PF08402 TOBE domain FDP11_16950 PF00005 ABC transporter FDP11_16955 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_16960 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_16965 PF13416 Bacterial extracellular solute-binding protein FDP11_16970 PF13416 Bacterial extracellular solute-binding protein FDP11_16975 PF02146 Sir2 family FDP11_16985 PF00909 Ammonium Transporter Family FDP11_17050 PF13247 4Fe-4S dicluster domain FDP11_17055 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FDP11_17055 PF00384 Molybdopterin oxidoreductase FDP11_17055 PF01568 Molydopterin dinucleotide binding domain FDP11_17065 PF02613 Nitrate reductase delta subunit FDP11_17090 PF02634 FdhD/NarQ family FDP11_17095 PF12848 ABC transporter FDP11_17095 PF00005 ABC transporter FDP11_17105 PF00512 His Kinase A (phospho-acceptor) domain FDP11_17105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_17110 PF00158 Sigma-54 interaction domain FDP11_17110 PF00072 Response regulator receiver domain FDP11_17110 PF02954 Bacterial regulatory protein, Fis family FDP11_17120 PF12849 PBP superfamily domain FDP11_17125 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_17130 PF00005 ABC transporter FDP11_17130 PF08402 TOBE domain FDP11_17135 PF12804 MobA-like NTP transferase domain FDP11_17140 PF03453 MoeA N-terminal region (domain I and II) FDP11_17140 PF03454 MoeA C-terminal region (domain IV) FDP11_17140 PF00994 Probable molybdopterin binding domain FDP11_17155 PF00534 Glycosyl transferases group 1 FDP11_17155 PF13439 Glycosyltransferase Family 4 FDP11_17160 PF00535 Glycosyl transferase family 2 FDP11_17165 PF02397 Bacterial sugar transferase FDP11_17175 PF02028 BCCT, betaine/carnitine/choline family transporter FDP11_17190 PF00270 DEAD/DEAH box helicase FDP11_17190 PF11898 Domain of unknown function (DUF3418) FDP11_17190 PF04408 Helicase associated domain (HA2) FDP11_17190 PF00271 Helicase conserved C-terminal domain FDP11_17190 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold FDP11_17195 PF02525 Flavodoxin-like fold FDP11_17205 PF02613 Nitrate reductase delta subunit FDP11_17210 PF04976 DMSO reductase anchor subunit (DmsC) FDP11_17215 PF13247 4Fe-4S dicluster domain FDP11_17215 PF12800 4Fe-4S binding domain FDP11_17220 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FDP11_17220 PF00384 Molybdopterin oxidoreductase FDP11_17220 PF01568 Molydopterin dinucleotide binding domain FDP11_17250 PF17158 Membrane-associated sensor, integral membrane domain FDP11_17250 PF00990 Diguanylate cyclase, GGDEF domain FDP11_17260 PF00012 Hsp70 protein FDP11_17265 PF00012 Hsp70 protein FDP11_17295 PF00005 ABC transporter FDP11_17295 PF00664 ABC transporter transmembrane region FDP11_17300 PF00005 ABC transporter FDP11_17300 PF00664 ABC transporter transmembrane region FDP11_17325 PF03222 Tryptophan/tyrosine permease family FDP11_17330 PF00465 Iron-containing alcohol dehydrogenase FDP11_17340 PF01966 HD domain FDP11_17350 PF03741 Integral membrane protein TerC family FDP11_17360 PF04055 Radical SAM superfamily FDP11_17365 PF11230 Protein of unknown function (DUF3029) FDP11_17370 PF01810 LysE type translocator FDP11_17375 PF11871 Domain of unknown function (DUF3391) FDP11_17375 PF01966 HD domain FDP11_17380 PF00990 Diguanylate cyclase, GGDEF domain FDP11_17380 PF03707 Bacterial signalling protein N terminal repeat FDP11_17380 PF00563 EAL domain FDP11_17385 PF00158 Sigma-54 interaction domain FDP11_17385 PF00072 Response regulator receiver domain FDP11_17385 PF02954 Bacterial regulatory protein, Fis family FDP11_17390 PF00512 His Kinase A (phospho-acceptor) domain FDP11_17390 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDP11_17390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_17395 PF00939 Sodium:sulfate symporter transmembrane region FDP11_17410 PF00300 Histidine phosphatase superfamily (branch 1) FDP11_17425 PF00480 ROK family FDP11_17465 PF00672 HAMP domain FDP11_17465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDP11_17465 PF17202 Single cache domain 3 FDP11_17470 PF00877 NlpC/P60 family FDP11_17480 PF05230 MASE2 domain FDP11_17480 PF00990 Diguanylate cyclase, GGDEF domain FDP11_17485 PF01339 CheB methylesterase FDP11_17485 PF00072 Response regulator receiver domain FDP11_17490 PF03881 Fructosamine kinase FDP11_17500 PF00677 Lumazine binding domain FDP11_17505 PF01554 MatE FDP11_17515 PF14743 DNA ligase OB-like domain FDP11_17515 PF01068 ATP dependent DNA ligase domain FDP11_17520 PF01740 STAS domain FDP11_17530 PF10531 SLBB domain FDP11_17530 PF02563 Polysaccharide biosynthesis/export protein FDP11_17550 PF02954 Bacterial regulatory protein, Fis family FDP11_17550 PF00158 Sigma-54 interaction domain FDP11_17550 PF00072 Response regulator receiver domain FDP11_17555 PF13439 Glycosyltransferase Family 4 FDP11_17555 PF00534 Glycosyl transferases group 1 FDP11_17560 PF00534 Glycosyl transferases group 1 FDP11_17560 PF13439 Glycosyltransferase Family 4 FDP11_17695 PF02810 SEC-C motif FDP11_17695 PF07516 SecA Wing and Scaffold domain FDP11_17695 PF07517 SecA DEAD-like domain FDP11_17695 PF01043 SecA preprotein cross-linking domain FDP11_17860 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal FDP11_17860 PF01926 50S ribosome-binding GTPase FDP11_17865 PF01926 50S ribosome-binding GTPase FDP11_17875 PF01926 50S ribosome-binding GTPase FDP11_17915 PF00176 SNF2 family N-terminal domain FDP11_17915 PF00271 Helicase conserved C-terminal domain FDP11_17915 PF12419 SNF2 Helicase protein FDP11_18055 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FDP11_18055 PF01872 RibD C-terminal domain FDP11_18075 PF00293 NUDIX domain FDP11_18075 PF13344 Haloacid dehalogenase-like hydrolase FDP11_18120 PF01810 LysE type translocator FDP11_18145 PF01809 Putative membrane protein insertion efficiency factor FDP11_18175 PF00293 NUDIX domain FDP11_18175 PF13344 Haloacid dehalogenase-like hydrolase FDP11_18190 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FDP11_18365 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FDP11_18365 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FDP11_18370 PF00583 Acetyltransferase (GNAT) family FDP11_18520 PF01809 Putative membrane protein insertion efficiency factor FDP11_18580 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FDP11_18795 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FDP11_18835 PF01337 Barstar (barnase inhibitor) FDP11_18930 PF05656 Protein of unknown function (DUF805) FDP11_19005 PF00186 Dihydrofolate reductase FDP11_19055 PF00583 Acetyltransferase (GNAT) family FDP11_19075 PF01906 Putative heavy-metal-binding FDP11_19085 PF01042 Endoribonuclease L-PSP FDP11_19100 PF01810 LysE type translocator FDP11_19130 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FDP11_19185 PF00583 Acetyltransferase (GNAT) family FDP11_19260 PF00571 CBS domain FDP11_19260 PF01380 SIS domain FDP11_19430 PF13649 Methyltransferase domain FDP11_19475 PF00583 Acetyltransferase (GNAT) family FDP11_19555 PF02540 NAD synthase FDP11_19555 PF00795 Carbon-nitrogen hydrolase FDP11_19700 PF01810 LysE type translocator FDP11_19705 PF13495 Phage integrase, N-terminal SAM-like domain FDP11_19705 PF00589 Phage integrase family FDP11_19720 PF13302 Acetyltransferase (GNAT) domain FDP11_19725 PF00158 Sigma-54 interaction domain FDP11_19725 PF18024 Helix-turn-helix domain FDP11_19730 PF05128 Domain of unknown function (DUF697) FDP11_19735 PF04317 YcjX-like family, DUF463 FDP11_19755 PF04715 Anthranilate synthase component I, N terminal region FDP11_19755 PF00425 chorismate binding enzyme FDP11_19760 PF09308 LuxQ, periplasmic FDP11_19760 PF00512 His Kinase A (phospho-acceptor) domain FDP11_19760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_19760 PF00072 Response regulator receiver domain FDP11_19770 PF00293 NUDIX domain FDP11_19775 PF03222 Tryptophan/tyrosine permease family FDP11_19780 PF03313 Serine dehydratase alpha chain FDP11_19780 PF03315 Serine dehydratase beta chain FDP11_19785 PF00563 EAL domain FDP11_19785 PF04940 Sensors of blue-light using FAD FDP11_19795 PF01242 6-pyruvoyl tetrahydropterin synthase FDP11_19800 PF02743 Cache domain FDP11_19800 PF00672 HAMP domain FDP11_19800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDP11_19805 PF00152 tRNA synthetases class II (D, K and N) FDP11_19805 PF01336 OB-fold nucleic acid binding domain FDP11_19815 PF00392 Bacterial regulatory proteins, gntR family FDP11_19815 PF00155 Aminotransferase class I and II FDP11_19840 PF00155 Aminotransferase class I and II FDP11_19860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDP11_19860 PF00672 HAMP domain FDP11_19865 PF02028 BCCT, betaine/carnitine/choline family transporter FDP11_19870 PF01047 MarR family FDP11_19875 PF00072 Response regulator receiver domain FDP11_19875 PF00196 Bacterial regulatory proteins, luxR family FDP11_19880 PF07730 Histidine kinase FDP11_19880 PF17200 Single Cache domain 2 FDP11_19885 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FDP11_19895 PF03480 Bacterial extracellular solute-binding protein, family 7 FDP11_19910 PF00753 Metallo-beta-lactamase superfamily FDP11_19915 PF05951 Bacterial protein of unknown function (DUF882) FDP11_19920 PF01471 Putative peptidoglycan binding domain FDP11_19920 PF03734 L,D-transpeptidase catalytic domain FDP11_19945 PF00925 GTP cyclohydrolase II FDP11_19955 PF03918 Cytochrome C biogenesis protein FDP11_19960 PF08534 Redoxin FDP11_19965 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal FDP11_19965 PF01578 Cytochrome C assembly protein FDP11_19970 PF03916 Polysulphide reductase, NrfD FDP11_19975 PF13247 4Fe-4S dicluster domain FDP11_19985 PF02335 Cytochrome c552 FDP11_20000 PF03989 DNA gyrase C-terminal domain, beta-propeller FDP11_20000 PF00521 DNA gyrase/topoisomerase IV, subunit A FDP11_20010 PF03477 ATP cone domain FDP11_20010 PF02867 Ribonucleotide reductase, barrel domain FDP11_20010 PF00317 Ribonucleotide reductase, all-alpha domain FDP11_20015 PF00268 Ribonucleotide reductase, small chain FDP11_20025 PF00994 Probable molybdopterin binding domain FDP11_20040 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain FDP11_20045 PF16653 Saccharopine dehydrogenase C-terminal domain FDP11_20045 PF03435 Saccharopine dehydrogenase NADP binding domain FDP11_20050 PF00202 Aminotransferase class-III FDP11_20075 PF01066 CDP-alcohol phosphatidyltransferase FDP11_20080 PF01541 GIY-YIG catalytic domain FDP11_20080 PF02151 UvrB/uvrC motif FDP11_20080 PF08459 UvrC Helix-hairpin-helix N-terminal FDP11_20085 PF00072 Response regulator receiver domain FDP11_20085 PF00196 Bacterial regulatory proteins, luxR family FDP11_20090 PF03104 DNA polymerase family B, exonuclease domain FDP11_20090 PF00136 DNA polymerase family B FDP11_20100 PF08207 Elongation factor P (EF-P) KOW-like domain FDP11_20100 PF09285 Elongation factor P, C-terminal FDP11_20100 PF01132 Elongation factor P (EF-P) OB domain FDP11_20105 PF04269 Protein of unknown function, DUF440 FDP11_20115 PF00849 RNA pseudouridylate synthase FDP11_20115 PF01479 S4 domain FDP11_20125 PF01300 Telomere recombination FDP11_20130 PF02811 PHP domain FDP11_20135 PF08056 Tryptophan operon leader peptide FDP11_20140 PF00425 chorismate binding enzyme FDP11_20140 PF04715 Anthranilate synthase component I, N terminal region FDP11_20145 PF00117 Glutamine amidotransferase class-I FDP11_20150 PF00591 Glycosyl transferase family, a/b domain FDP11_20150 PF02885 Glycosyl transferase family, helical bundle domain FDP11_20155 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase FDP11_20155 PF00218 Indole-3-glycerol phosphate synthase FDP11_20160 PF00291 Pyridoxal-phosphate dependent enzyme FDP11_20165 PF00290 Tryptophan synthase alpha chain FDP11_20175 PF13545 Crp-like helix-turn-helix domain FDP11_20175 PF00027 Cyclic nucleotide-binding domain FDP11_20180 PF13193 AMP-binding enzyme C-terminal domain FDP11_20180 PF00501 AMP-binding enzyme FDP11_20190 PF00375 Sodium:dicarboxylate symporter family FDP11_20195 PF17327 Acyl homoserine lactone synthase FDP11_20200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_20200 PF00072 Response regulator receiver domain FDP11_20210 PF04279 Intracellular septation protein A FDP11_20215 PF03061 Thioesterase superfamily FDP11_20220 PF03795 YCII-related domain FDP11_20230 PF01717 Cobalamin-independent synthase, Catalytic domain FDP11_20230 PF08267 Cobalamin-independent synthase, N-terminal domain FDP11_20240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_20240 PF03466 LysR substrate binding domain FDP11_20255 PF01590 GAF domain FDP11_20255 PF00990 Diguanylate cyclase, GGDEF domain FDP11_20255 PF00563 EAL domain FDP11_20255 PF00360 Phytochrome region FDP11_20260 PF08497 Radical SAM N-terminal FDP11_20260 PF04055 Radical SAM superfamily FDP11_20260 PF11842 Domain of unknown function (DUF3362) FDP11_20265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDP11_20265 PF00672 HAMP domain FDP11_20275 PF00072 Response regulator receiver domain FDP11_20275 PF00486 Transcriptional regulatory protein, C terminal FDP11_20280 PF00512 His Kinase A (phospho-acceptor) domain FDP11_20280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_20280 PF00672 HAMP domain FDP11_20300 PF03466 LysR substrate binding domain FDP11_20300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_20305 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDP11_20305 PF00529 HlyD membrane-fusion protein of T1SS FDP11_20320 PF00265 Thymidine kinase FDP11_20325 PF01406 tRNA synthetases class I (C) catalytic domain FDP11_20325 PF09190 DALR domain FDP11_20330 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FDP11_20335 PF00149 Calcineurin-like phosphoesterase FDP11_20340 PF08668 HDOD domain FDP11_20340 PF00563 EAL domain FDP11_20350 PF02810 SEC-C motif FDP11_20355 PF01502 Phosphoribosyl-AMP cyclohydrolase FDP11_20355 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase FDP11_20360 PF00977 Histidine biosynthesis protein FDP11_20365 PF00977 Histidine biosynthesis protein FDP11_20370 PF00117 Glutamine amidotransferase class-I FDP11_20375 PF08645 Polynucleotide kinase 3 phosphatase FDP11_20375 PF00475 Imidazoleglycerol-phosphate dehydratase FDP11_20380 PF00155 Aminotransferase class I and II FDP11_20385 PF00815 Histidinol dehydrogenase FDP11_20390 PF01634 ATP phosphoribosyltransferase FDP11_20390 PF08029 HisG, C-terminal domain FDP11_20395 PF00158 Sigma-54 interaction domain FDP11_20395 PF00072 Response regulator receiver domain FDP11_20395 PF02954 Bacterial regulatory protein, Fis family FDP11_20405 PF03553 Na+/H+ antiporter family FDP11_20410 PF00816 H-NS histone family FDP11_20415 PF00294 pfkB family carbohydrate kinase FDP11_20430 PF04356 Protein of unknown function (DUF489) FDP11_20435 PF00206 Lyase FDP11_20435 PF08328 Adenylosuccinate lyase C-terminal FDP11_20475 PF00106 short chain dehydrogenase FDP11_20485 PF01435 Peptidase family M48 FDP11_20500 PF08241 Methyltransferase domain FDP11_20505 PF00155 Aminotransferase class I and II FDP11_20510 PF06968 Biotin and Thiamin Synthesis associated domain FDP11_20510 PF04055 Radical SAM superfamily FDP11_20515 PF00202 Aminotransferase class-III FDP11_20520 PF01258 Prokaryotic dksA/traR C4-type zinc finger FDP11_20535 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FDP11_20535 PF02403 Seryl-tRNA synthetase N-terminal domain FDP11_20540 PF00004 ATPase family associated with various cellular activities (AAA) FDP11_20540 PF16193 AAA C-terminal domain FDP11_20540 PF12002 MgsA AAA+ ATPase C terminal FDP11_20545 PF03548 Outer membrane lipoprotein carrier protein LolA FDP11_20550 PF13491 4TM region of DNA translocase FtsK/SpoIIIE FDP11_20550 PF01580 FtsK/SpoIIIE family FDP11_20550 PF17854 FtsK alpha domain FDP11_20550 PF09397 Ftsk gamma domain FDP11_20555 PF01037 Lrp/AsnC ligand binding domain FDP11_20560 PF05222 Alanine dehydrogenase/PNT, N-terminal domain FDP11_20560 PF01262 Alanine dehydrogenase/PNT, C-terminal domain FDP11_20570 PF03466 LysR substrate binding domain FDP11_20570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_20580 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) FDP11_20585 PF03372 Endonuclease/Exonuclease/phosphatase family FDP11_20595 PF00579 tRNA synthetases class I (W and Y) FDP11_20615 PF00873 AcrB/AcrD/AcrF family FDP11_20620 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDP11_20620 PF00529 HlyD membrane-fusion protein of T1SS FDP11_20635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDP11_20635 PF00672 HAMP domain FDP11_20635 PF02743 Cache domain FDP11_20645 PF06610 L-alanine exporter FDP11_20650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_20650 PF09308 LuxQ, periplasmic FDP11_20650 PF00072 Response regulator receiver domain FDP11_20650 PF00512 His Kinase A (phospho-acceptor) domain FDP11_20660 PF03738 Glutathionylspermidine synthase preATP-grasp FDP11_20670 PF03994 Domain of Unknown Function (DUF350) FDP11_20680 PF02445 Quinolinate synthetase A protein FDP11_20685 PF00990 Diguanylate cyclase, GGDEF domain FDP11_20685 PF00072 Response regulator receiver domain FDP11_20690 PF02903 Alpha amylase, N-terminal ig-like domain FDP11_20690 PF00128 Alpha amylase, catalytic domain FDP11_20695 PF00005 ABC transporter FDP11_20700 PF02653 Branched-chain amino acid transport system / permease component FDP11_20710 PF04217 Protein of unknown function, DUF412 FDP11_20715 PF00871 Acetokinase family FDP11_20720 PF07085 DRTGG domain FDP11_20720 PF01515 Phosphate acetyl/butaryl transferase FDP11_20725 PF13194 Domain of unknown function (DUF4010) FDP11_20735 PF13409 Glutathione S-transferase, N-terminal domain FDP11_20740 PF00005 ABC transporter FDP11_20740 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FDP11_20745 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FDP11_20745 PF00005 ABC transporter FDP11_20750 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_20750 PF12911 N-terminal TM domain of oligopeptide transport permease C FDP11_20755 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_20760 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FDP11_20765 PF02391 MoaE protein FDP11_20770 PF02597 ThiS family FDP11_20775 PF01967 MoaC family FDP11_20780 PF00994 Probable molybdopterin binding domain FDP11_20785 PF06463 Molybdenum Cofactor Synthesis C FDP11_20785 PF04055 Radical SAM superfamily FDP11_20790 PF01933 Uncharacterised protein family UPF0052 FDP11_20795 PF01627 Hpt domain FDP11_20800 PF02954 Bacterial regulatory protein, Fis family FDP11_20800 PF00072 Response regulator receiver domain FDP11_20800 PF00158 Sigma-54 interaction domain FDP11_20805 PF04851 Type III restriction enzyme, res subunit FDP11_20805 PF02151 UvrB/uvrC motif FDP11_20805 PF12344 Ultra-violet resistance protein B FDP11_20805 PF00271 Helicase conserved C-terminal domain FDP11_20805 PF17757 UvrB interaction domain FDP11_20825 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_20830 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_20835 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDP11_20840 PF00005 ABC transporter FDP11_20860 PF01228 Glycine radical FDP11_20860 PF02901 Pyruvate formate lyase-like FDP11_20870 PF04055 Radical SAM superfamily FDP11_20880 PF03887 YfbU domain FDP11_20890 PF06798 PrkA serine protein kinase C-terminal domain FDP11_20890 PF08298 PrkA AAA domain FDP11_20895 PF04285 Protein of unknown function (DUF444) FDP11_20900 PF04293 SpoVR like protein FDP11_20905 PF02348 Cytidylyltransferase FDP11_20910 PF03966 Trm112p-like protein FDP11_20915 PF02606 Tetraacyldisaccharide-1-P 4'-kinase FDP11_20920 PF00005 ABC transporter FDP11_20920 PF00664 ABC transporter transmembrane region FDP11_20925 PF00753 Metallo-beta-lactamase superfamily FDP11_20925 PF13567 Domain of unknown function (DUF4131) FDP11_20925 PF03772 Competence protein FDP11_20935 PF12704 MacB-like periplasmic core domain FDP11_20935 PF02687 FtsX-like permease family FDP11_20940 PF00005 ABC transporter FDP11_20945 PF12704 MacB-like periplasmic core domain FDP11_20945 PF02687 FtsX-like permease family FDP11_20955 PF17757 UvrB interaction domain FDP11_20955 PF03461 TRCF domain FDP11_20955 PF00271 Helicase conserved C-terminal domain FDP11_20955 PF02559 CarD-like/TRCF domain FDP11_20955 PF00270 DEAD/DEAH box helicase FDP11_20970 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDP11_20980 PF05728 Uncharacterised protein family (UPF0227) FDP11_20990 PF13036 Peptidoglycan-synthase activator LpoB FDP11_20990 PF08139 Prokaryotic membrane lipoprotein lipid attachment site FDP11_21005 PF01230 HIT domain FDP11_21010 PF00672 HAMP domain FDP11_21010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDP11_21025 PF01048 Phosphorylase superfamily FDP11_21030 PF00403 Heavy-metal-associated domain FDP11_21035 PF00478 IMP dehydrogenase / GMP reductase domain FDP11_21035 PF00571 CBS domain FDP11_21050 PF11953 Domain of unknown function (DUF3470) FDP11_21050 PF00037 4Fe-4S binding domain FDP11_21055 PF08032 RNA 2'-O ribose methyltransferase substrate binding FDP11_21055 PF00588 SpoU rRNA Methylase family FDP11_21065 PF00990 Diguanylate cyclase, GGDEF domain FDP11_21065 PF17152 Periplasmic sensor domain FDP11_21075 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FDP11_21080 PF09619 Type III secretion system lipoprotein chaperone (YscW) FDP11_21095 PF13404 AsnC-type helix-turn-helix domain FDP11_21095 PF01037 Lrp/AsnC ligand binding domain FDP11_21100 PF00291 Pyridoxal-phosphate dependent enzyme FDP11_21125 PF00873 AcrB/AcrD/AcrF family FDP11_21130 PF13533 Biotin-lipoyl like FDP11_21175 PF07690 Major Facilitator Superfamily FDP11_21180 PF03601 Conserved hypothetical protein 698 FDP11_21190 PF13193 AMP-binding enzyme C-terminal domain FDP11_21190 PF00501 AMP-binding enzyme FDP11_21195 PF13378 Enolase C-terminal domain-like FDP11_21200 PF00378 Enoyl-CoA hydratase/isomerase FDP11_21205 PF12697 Alpha/beta hydrolase family FDP11_21210 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FDP11_21210 PF16582 Middle domain of thiamine pyrophosphate FDP11_21210 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FDP11_21215 PF00425 chorismate binding enzyme FDP11_21220 PF00155 Aminotransferase class I and II FDP11_21230 PF13286 Phosphohydrolase-associated domain FDP11_21230 PF01966 HD domain FDP11_21250 PF13145 PPIC-type PPIASE domain FDP11_21255 PF00216 Bacterial DNA-binding protein FDP11_21260 PF05362 Lon protease (S16) C-terminal proteolytic domain FDP11_21260 PF02190 ATP-dependent protease La (LON) substrate-binding domain FDP11_21260 PF00004 ATPase family associated with various cellular activities (AAA) FDP11_21265 PF07724 AAA domain (Cdc48 subfamily) FDP11_21265 PF06689 ClpX C4-type zinc finger FDP11_21265 PF10431 C-terminal, D2-small domain, of ClpB protein FDP11_21270 PF00574 Clp protease FDP11_21275 PF05697 Bacterial trigger factor protein (TF) FDP11_21275 PF05698 Bacterial trigger factor protein (TF) C-terminus FDP11_21275 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FDP11_21280 PF00512 His Kinase A (phospho-acceptor) domain FDP11_21280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_21280 PF02743 Cache domain FDP11_21285 PF00158 Sigma-54 interaction domain FDP11_21285 PF02954 Bacterial regulatory protein, Fis family FDP11_21285 PF00072 Response regulator receiver domain FDP11_21295 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FDP11_21300 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component FDP11_21305 PF03480 Bacterial extracellular solute-binding protein, family 7 FDP11_21310 PF02696 Uncharacterized ACR, YdiU/UPF0061 family FDP11_21330 PF02386 Cation transport protein FDP11_21335 PF02254 TrkA-N domain FDP11_21335 PF02080 TrkA-C domain FDP11_21340 PF00270 DEAD/DEAH box helicase FDP11_21340 PF00271 Helicase conserved C-terminal domain FDP11_21345 PF00571 CBS domain FDP11_21345 PF03471 Transporter associated domain FDP11_21345 PF01595 Cyclin M transmembrane N-terminal domain FDP11_21355 PF04820 Tryptophan halogenase FDP11_21380 PF00550 Phosphopantetheine attachment site FDP11_21385 PF00550 Phosphopantetheine attachment site FDP11_21400 PF07977 FabA-like domain FDP11_21405 PF00535 Glycosyl transferase family 2 FDP11_21410 PF00221 Aromatic amino acid lyase FDP11_21435 PF02801 Beta-ketoacyl synthase, C-terminal domain FDP11_21435 PF00109 Beta-ketoacyl synthase, N-terminal domain FDP11_21440 PF07977 FabA-like domain FDP11_21450 PF00109 Beta-ketoacyl synthase, N-terminal domain FDP11_21450 PF02801 Beta-ketoacyl synthase, C-terminal domain FDP11_21460 PF13356 Arm DNA-binding domain FDP11_21460 PF00589 Phage integrase family FDP11_21460 PF14659 Phage integrase, N-terminal SAM-like domain FDP11_21465 PF13657 HipA N-terminal domain FDP11_21465 PF07804 HipA-like C-terminal domain FDP11_21470 PF01381 Helix-turn-helix FDP11_21510 PF00271 Helicase conserved C-terminal domain FDP11_21510 PF04851 Type III restriction enzyme, res subunit FDP11_21510 PF08463 EcoEI R protein C-terminal FDP11_21510 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) FDP11_21520 PF01555 DNA methylase FDP11_21550 PF12161 HsdM N-terminal domain FDP11_21550 PF02384 N-6 DNA Methylase FDP11_21555 PF01420 Type I restriction modification DNA specificity domain FDP11_21590 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain FDP11_21590 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain FDP11_21595 PF01773 Na+ dependent nucleoside transporter N-terminus FDP11_21595 PF07662 Na+ dependent nucleoside transporter C-terminus FDP11_21595 PF07670 Nucleoside recognition FDP11_21600 PF03466 LysR substrate binding domain FDP11_21600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_21605 PF13406 Transglycosylase SLT domain FDP11_21610 PF05166 YcgL domain FDP11_21615 PF03775 Septum formation inhibitor MinC, C-terminal domain FDP11_21615 PF05209 Septum formation inhibitor MinC, N-terminal domain FDP11_21620 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain FDP11_21625 PF03776 Septum formation topological specificity factor MinE FDP11_21630 PF01612 3'-5' exonuclease FDP11_21630 PF00570 HRDC domain FDP11_21635 PF13193 AMP-binding enzyme C-terminal domain FDP11_21635 PF00501 AMP-binding enzyme FDP11_21640 PF00561 alpha/beta hydrolase fold FDP11_21655 PF00814 Glycoprotease family FDP11_21660 PF04851 Type III restriction enzyme, res subunit FDP11_21660 PF13307 Helicase C-terminal domain FDP11_21665 PF00551 Formyl transferase FDP11_21665 PF01842 ACT domain FDP11_21670 PF00089 Trypsin FDP11_21680 PF06185 YecM protein FDP11_21690 PF03485 Arginyl tRNA synthetase N terminal domain FDP11_21690 PF00750 tRNA synthetases class I (R) FDP11_21690 PF05746 DALR anticodon binding domain FDP11_21705 PF07664 Ferrous iron transport protein B C terminus FDP11_21705 PF17910 FeoB cytosolic helical domain FDP11_21705 PF02421 Ferrous iron transport protein B FDP11_21705 PF07670 Nucleoside recognition FDP11_21710 PF04023 FeoA domain FDP11_21725 PF02311 AraC-like ligand binding domain FDP11_21725 PF12833 Helix-turn-helix domain FDP11_21730 PF01297 Zinc-uptake complex component A periplasmic FDP11_21735 PF00005 ABC transporter FDP11_21740 PF00950 ABC 3 transport family FDP11_21745 PF13230 Glutamine amidotransferases class-II FDP11_21750 PF13580 SIS domain FDP11_21755 PF09317 Domain of unknown function (DUF1974) FDP11_21755 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDP11_21755 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDP11_21755 PF02770 Acyl-CoA dehydrogenase, middle domain FDP11_21760 PF00916 Sulfate permease family FDP11_21760 PF01740 STAS domain FDP11_21765 PF00583 Acetyltransferase (GNAT) family FDP11_21785 PF00929 Exonuclease FDP11_21790 PF00075 RNase H FDP11_21795 PF08241 Methyltransferase domain FDP11_21800 PF00753 Metallo-beta-lactamase superfamily FDP11_21800 PF16123 Hydroxyacylglutathione hydrolase C-terminus FDP11_21805 PF01476 LysM domain FDP11_21805 PF01464 Transglycosylase SLT domain FDP11_21815 PF03372 Endonuclease/Exonuclease/phosphatase family FDP11_21820 PF00543 Nitrogen regulatory protein P-II FDP11_21825 PF00034 Cytochrome c FDP11_21830 PF01171 PP-loop family FDP11_21830 PF09179 TilS substrate binding domain FDP11_21830 PF11734 TilS substrate C-terminal domain FDP11_21835 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit FDP11_21840 PF01336 OB-fold nucleic acid binding domain FDP11_21840 PF02811 PHP domain FDP11_21840 PF14579 Helix-hairpin-helix motif FDP11_21840 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FDP11_21840 PF07733 Bacterial DNA polymerase III alpha NTPase domain FDP11_21850 PF00132 Bacterial transferase hexapeptide (six repeats) FDP11_21850 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 FDP11_21855 PF07977 FabA-like domain FDP11_21860 PF00132 Bacterial transferase hexapeptide (six repeats) FDP11_21860 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD FDP11_21865 PF03938 Outer membrane protein (OmpH-like) FDP11_21870 PF07244 Surface antigen variable number repeat FDP11_21870 PF01103 Surface antigen FDP11_21875 PF17820 PDZ domain FDP11_21875 PF02163 Peptidase family M50 FDP11_21880 PF13288 DXP reductoisomerase C-terminal domain FDP11_21880 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase FDP11_21880 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain FDP11_21890 PF01255 Putative undecaprenyl diphosphate synthase FDP11_21895 PF01765 Ribosome recycling factor FDP11_21900 PF00696 Amino acid kinase family FDP11_21905 PF00889 Elongation factor TS FDP11_21910 PF00318 Ribosomal protein S2 FDP11_21915 PF00557 Metallopeptidase family M24 FDP11_21920 PF08335 GlnD PII-uridylyltransferase FDP11_21920 PF01966 HD domain FDP11_21920 PF01909 Nucleotidyltransferase domain FDP11_21920 PF01842 ACT domain FDP11_21925 PF11944 Protein of unknown function (DUF3461) FDP11_21930 PF00849 RNA pseudouridylate synthase FDP11_21935 PF04287 tRNA pseudouridine synthase C FDP11_21960 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 FDP11_21965 PF03806 AbgT putative transporter family FDP11_21975 PF00444 Ribosomal protein L36 FDP11_21980 PF01197 Ribosomal protein L31 FDP11_21985 PF01980 tRNA-methyltransferase O FDP11_21985 PF18389 TrmO C-terminal domain FDP11_21990 PF03129 Anticodon binding domain FDP11_21990 PF04073 Aminoacyl-tRNA editing domain FDP11_21990 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FDP11_22000 PF06786 Uncharacterised protein family (UPF0253) FDP11_22010 PF00209 Sodium:neurotransmitter symporter family FDP11_22025 PF01272 Transcription elongation factor, GreA/GreB, C-term FDP11_22025 PF03449 Transcription elongation factor, N-terminal FDP11_22030 PF16124 RecQ zinc-binding FDP11_22030 PF00270 DEAD/DEAH box helicase FDP11_22030 PF00570 HRDC domain FDP11_22030 PF09382 RQC domain FDP11_22030 PF00271 Helicase conserved C-terminal domain FDP11_22035 PF11799 impB/mucB/samB family C-terminal domain FDP11_22035 PF11798 IMS family HHH motif FDP11_22035 PF00817 impB/mucB/samB family FDP11_22050 PF02424 ApbE family FDP11_22055 PF00111 2Fe-2S iron-sulfur cluster binding domain FDP11_22055 PF00175 Oxidoreductase NAD-binding domain FDP11_22055 PF00970 Oxidoreductase FAD-binding domain FDP11_22060 PF02508 Rnf-Nqr subunit, membrane protein FDP11_22065 PF02508 Rnf-Nqr subunit, membrane protein FDP11_22070 PF04205 FMN-binding domain FDP11_22075 PF03116 NQR2, RnfD, RnfE family FDP11_22080 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) FDP11_22080 PF11973 NQRA C-terminal domain FDP11_22085 PF01722 BolA-like protein FDP11_22090 PF05175 Methyltransferase small domain FDP11_22095 PF08139 Prokaryotic membrane lipoprotein lipid attachment site FDP11_22095 PF03923 Uncharacterized lipoprotein FDP11_22100 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FDP11_22105 PF07690 Major Facilitator Superfamily FDP11_22115 PF04542 Sigma-70 region 2 FDP11_22115 PF04545 Sigma-70, region 4 FDP11_22140 PF03502 Nucleoside-specific channel-forming protein, Tsx FDP11_22145 PF02558 Ketopantoate reductase PanE/ApbA FDP11_22145 PF08546 Ketopantoate reductase PanE/ApbA C terminal FDP11_22150 PF01965 DJ-1/PfpI family FDP11_22155 PF00266 Aminotransferase class-V FDP11_22160 PF00990 Diguanylate cyclase, GGDEF domain FDP11_22160 PF17158 Membrane-associated sensor, integral membrane domain FDP11_22165 PF02657 Fe-S metabolism associated domain FDP11_22170 PF00899 ThiF family FDP11_22175 PF03562 MltA specific insert domain FDP11_22175 PF06725 3D domain FDP11_22190 PF00696 Amino acid kinase family FDP11_22190 PF00583 Acetyltransferase (GNAT) family FDP11_22210 PF13538 UvrD-like helicase C-terminal domain FDP11_22215 PF13361 UvrD-like helicase C-terminal domain FDP11_22215 PF00580 UvrD/REP helicase N-terminal domain FDP11_22215 PF12705 PD-(D/E)XK nuclease superfamily FDP11_22225 PF17946 RecC C-terminal domain FDP11_22230 PF00884 Sulfatase FDP11_22230 PF11893 Domain of unknown function (DUF3413) FDP11_22240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_22240 PF03466 LysR substrate binding domain FDP11_22245 PF07130 YebG protein FDP11_22250 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle FDP11_22250 PF14602 Hexapeptide repeat of succinyl-transferase FDP11_22255 PF03009 Glycerophosphoryl diester phosphodiesterase family FDP11_22260 PF07690 Major Facilitator Superfamily FDP11_22275 PF00230 Major intrinsic protein FDP11_22280 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FDP11_22280 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FDP11_22285 PF00455 DeoR C terminal sensor domain FDP11_22285 PF08220 DeoR-like helix-turn-helix domain FDP11_22290 PF16901 C-terminal domain of alpha-glycerophosphate oxidase FDP11_22290 PF01266 FAD dependent oxidoreductase FDP11_22295 PF01544 CorA-like Mg2+ transporter protein FDP11_22310 PF01588 Putative tRNA binding domain FDP11_22315 PF00356 Bacterial regulatory proteins, lacI family FDP11_22320 PF00929 Exonuclease FDP11_22320 PF07733 Bacterial DNA polymerase III alpha NTPase domain FDP11_22320 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FDP11_22320 PF14579 Helix-hairpin-helix motif FDP11_22320 PF02811 PHP domain FDP11_22330 PF00474 Sodium:solute symporter family FDP11_22335 PF01263 Aldose 1-epimerase FDP11_22340 PF00288 GHMP kinases N terminal domain FDP11_22340 PF08544 GHMP kinases C terminal FDP11_22340 PF10509 Galactokinase galactose-binding signature FDP11_22345 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain FDP11_22345 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain FDP11_22350 PF16363 GDP-mannose 4,6 dehydratase FDP11_22360 PF00356 Bacterial regulatory proteins, lacI family FDP11_22365 PF02929 Beta galactosidase small chain FDP11_22365 PF16353 Domain of unknown function(DUF4981) FDP11_22365 PF00703 Glycosyl hydrolases family 2 FDP11_22365 PF02836 Glycosyl hydrolases family 2, TIM barrel domain FDP11_22365 PF02837 Glycosyl hydrolases family 2, sugar binding domain FDP11_22370 PF04074 YhcH/YjgK/YiaL FDP11_22375 PF13520 Amino acid permease FDP11_22380 PF03466 LysR substrate binding domain FDP11_22380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_22410 PF00437 Type II/IV secretion system protein FDP11_22440 PF04972 BON domain FDP11_22440 PF13629 Pilus formation protein N terminal region FDP11_22440 PF00263 Bacterial type II and III secretion system protein FDP11_22465 PF12833 Helix-turn-helix domain FDP11_22465 PF02805 Metal binding domain of Ada FDP11_22470 PF00501 AMP-binding enzyme FDP11_22480 PF03466 LysR substrate binding domain FDP11_22480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_22485 PF00009 Elongation factor Tu GTP binding domain FDP11_22485 PF03764 Elongation factor G, domain IV FDP11_22485 PF14492 Elongation Factor G, domain II FDP11_22485 PF03144 Elongation factor Tu domain 2 FDP11_22485 PF00679 Elongation factor G C-terminus FDP11_22490 PF18073 Rubredoxin metal binding domain FDP11_22500 PF18429 Domain of unknown function (DUF5609) FDP11_22510 PF01048 Phosphorylase superfamily FDP11_22515 PF01676 Metalloenzyme superfamily FDP11_22520 PF00591 Glycosyl transferase family, a/b domain FDP11_22520 PF02885 Glycosyl transferase family, helical bundle domain FDP11_22520 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain FDP11_22525 PF01791 DeoC/LacD family aldolase FDP11_22530 PF07670 Nucleoside recognition FDP11_22530 PF01773 Na+ dependent nucleoside transporter N-terminus FDP11_22530 PF07662 Na+ dependent nucleoside transporter C-terminus FDP11_22535 PF01026 TatD related DNase FDP11_22545 PF16658 Class II release factor RF3, C-terminal domain FDP11_22545 PF03144 Elongation factor Tu domain 2 FDP11_22545 PF00009 Elongation factor Tu GTP binding domain FDP11_22565 PF13508 Acetyltransferase (GNAT) domain FDP11_22570 PF02036 SCP-2 sterol transfer family FDP11_22575 PF03707 Bacterial signalling protein N terminal repeat FDP11_22575 PF00563 EAL domain FDP11_22575 PF00990 Diguanylate cyclase, GGDEF domain FDP11_22580 PF01136 Peptidase family U32 FDP11_22585 PF01136 Peptidase family U32 FDP11_22590 PF01554 MatE FDP11_22600 PF13181 Tetratricopeptide repeat FDP11_22600 PF07719 Tetratricopeptide repeat FDP11_22605 PF00575 S1 RNA binding domain FDP11_22605 PF03725 3' exoribonuclease family, domain 2 FDP11_22605 PF00013 KH domain FDP11_22605 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain FDP11_22605 PF01138 3' exoribonuclease family, domain 1 FDP11_22610 PF00312 Ribosomal protein S15 FDP11_22615 PF01509 TruB family pseudouridylate synthase (N terminal domain) FDP11_22615 PF16198 tRNA pseudouridylate synthase B C-terminal domain FDP11_22615 PF09157 Pseudouridine synthase II TruB, C-terminal FDP11_22620 PF02033 Ribosome-binding factor A FDP11_22625 PF08364 Bacterial translation initiation factor IF-2 associated region FDP11_22625 PF11987 Translation-initiation factor 2 FDP11_22625 PF00009 Elongation factor Tu GTP binding domain FDP11_22625 PF04760 Translation initiation factor IF-2, N-terminal region FDP11_22630 PF08529 NusA N-terminal domain FDP11_22630 PF00575 S1 RNA binding domain FDP11_22630 PF13184 NusA-like KH domain FDP11_22635 PF02576 RimP N-terminal domain FDP11_22635 PF17384 RimP C-terminal SH3 domain FDP11_22650 PF03840 Preprotein translocase SecG subunit FDP11_22660 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FDP11_22660 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FDP11_22660 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FDP11_22660 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FDP11_22665 PF00809 Pterin binding enzyme FDP11_22670 PF01434 Peptidase family M41 FDP11_22670 PF06480 FtsH Extracellular FDP11_22670 PF17862 AAA+ lid domain FDP11_22670 PF00004 ATPase family associated with various cellular activities (AAA) FDP11_22675 PF01728 FtsJ-like methyltransferase FDP11_22680 PF01985 CRS1 / YhbY (CRM) domain FDP11_22685 PF01272 Transcription elongation factor, GreA/GreB, C-term FDP11_22685 PF03449 Transcription elongation factor, N-terminal FDP11_22690 PF13609 Gram-negative porin FDP11_22695 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family FDP11_22710 PF14437 MafB19-like deaminase FDP11_22715 PF03806 AbgT putative transporter family FDP11_22740 PF07963 Prokaryotic N-terminal methylation motif FDP11_22740 PF00114 Pilin (bacterial filament) FDP11_22745 PF01556 DnaJ C terminal domain FDP11_22745 PF00226 DnaJ domain FDP11_22745 PF00684 DnaJ central domain FDP11_22750 PF00012 Hsp70 protein FDP11_22755 PF00375 Sodium:dicarboxylate symporter family FDP11_22760 PF01025 GrpE FDP11_22765 PF01513 ATP-NAD kinase FDP11_22775 PF02463 RecF/RecN/SMC N terminal domain FDP11_22780 PF04355 SmpA / OmlA family FDP11_22785 PF03658 RnfH family Ubiquitin FDP11_22790 PF03364 Polyketide cyclase / dehydrase and lipid transport FDP11_22795 PF01668 SmpB protein FDP11_22835 PF02384 N-6 DNA Methylase FDP11_22855 PF03466 LysR substrate binding domain FDP11_22855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_22860 PF00795 Carbon-nitrogen hydrolase FDP11_22860 PF00583 Acetyltransferase (GNAT) family FDP11_22880 PF00202 Aminotransferase class-III FDP11_22885 PF01053 Cys/Met metabolism PLP-dependent enzyme FDP11_22890 PF07969 Amidohydrolase family FDP11_22910 PF03466 LysR substrate binding domain FDP11_22910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_22915 PF01266 FAD dependent oxidoreductase FDP11_22920 PF01235 Sodium:alanine symporter family FDP11_22930 PF01184 GPR1/FUN34/yaaH family FDP11_22935 PF00704 Glycosyl hydrolases family 18 FDP11_22935 PF06483 Chitinase C FDP11_22940 PF03553 Na+/H+ antiporter family FDP11_22945 PF02540 NAD synthase FDP11_22945 PF00958 GMP synthase C terminal domain FDP11_22945 PF00117 Glutamine amidotransferase class-I FDP11_22950 PF00478 IMP dehydrogenase / GMP reductase domain FDP11_22950 PF00571 CBS domain FDP11_22955 PF13742 OB-fold nucleic acid binding domain FDP11_22955 PF02601 Exonuclease VII, large subunit FDP11_22970 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal FDP11_22970 PF01926 50S ribosome-binding GTPase FDP11_22975 PF13360 PQQ-like domain FDP11_22980 PF09976 Tetratricopeptide repeat-like domain FDP11_22985 PF13393 Histidyl-tRNA synthetase FDP11_22985 PF03129 Anticodon binding domain FDP11_22990 PF04551 GcpE protein FDP11_22995 PF13464 Domain of unknown function (DUF4115) FDP11_23005 PF04055 Radical SAM superfamily FDP11_23010 PF00334 Nucleoside diphosphate kinase FDP11_23015 PF00883 Cytosol aminopeptidase family, catalytic domain FDP11_23015 PF12404 Peptidase FDP11_23020 PF04384 Iron-sulphur cluster assembly FDP11_23025 PF00111 2Fe-2S iron-sulfur cluster binding domain FDP11_23030 PF00012 Hsp70 protein FDP11_23035 PF00226 DnaJ domain FDP11_23035 PF07743 HSCB C-terminal oligomerisation domain FDP11_23040 PF01521 Iron-sulphur cluster biosynthesis FDP11_23045 PF01592 NifU-like N terminal domain FDP11_23050 PF00266 Aminotransferase class-V FDP11_23055 PF02082 Transcriptional regulator FDP11_23060 PF00588 SpoU rRNA Methylase family FDP11_23065 PF00459 Inositol monophosphatase family FDP11_23075 PF07549 SecD/SecF GG Motif FDP11_23075 PF02355 Protein export membrane protein FDP11_23080 PF02355 Protein export membrane protein FDP11_23080 PF13721 SecD export protein N-terminal TM region FDP11_23080 PF07549 SecD/SecF GG Motif FDP11_23085 PF02699 Preprotein translocase subunit FDP11_23090 PF01702 Queuine tRNA-ribosyltransferase FDP11_23095 PF02547 Queuosine biosynthesis protein FDP11_23110 PF00571 CBS domain FDP11_23115 PF00463 Isocitrate lyase family FDP11_23120 PF01274 Malate synthase FDP11_23130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_23130 PF03466 LysR substrate binding domain FDP11_23135 PF00578 AhpC/TSA family FDP11_23135 PF10417 C-terminal domain of 1-Cys peroxiredoxin FDP11_23145 PF03932 CutC family FDP11_23150 PF03976 Polyphosphate kinase 2 (PPK2) FDP11_23155 PF01895 PhoU domain FDP11_23160 PF00005 ABC transporter FDP11_23165 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_23170 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_23175 PF17941 Polyphosphate kinase C-terminal domain 1 FDP11_23175 PF13090 Polyphosphate kinase C-terminal domain 2 FDP11_23175 PF02503 Polyphosphate kinase middle domain FDP11_23175 PF13089 Polyphosphate kinase N-terminal domain FDP11_23180 PF02541 Ppx/GppA phosphatase family FDP11_23185 PF12849 PBP superfamily domain FDP11_23190 PF00989 PAS fold FDP11_23190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_23190 PF11808 Phosphate regulon sensor protein PhoR FDP11_23190 PF00512 His Kinase A (phospho-acceptor) domain FDP11_23195 PF00486 Transcriptional regulatory protein, C terminal FDP11_23195 PF00072 Response regulator receiver domain FDP11_23205 PF04381 Putative exonuclease, RdgC FDP11_23215 PF00037 4Fe-4S binding domain FDP11_23225 PF03411 Penicillin-insensitive murein endopeptidase FDP11_23280 PF10431 C-terminal, D2-small domain, of ClpB protein FDP11_23280 PF00004 ATPase family associated with various cellular activities (AAA) FDP11_23280 PF07724 AAA domain (Cdc48 subfamily) FDP11_23280 PF17871 AAA lid domain FDP11_23280 PF02861 Clp amino terminal domain, pathogenicity island component FDP11_23290 PF01479 S4 domain FDP11_23290 PF00849 RNA pseudouridylate synthase FDP11_23295 PF13525 Outer membrane lipoprotein FDP11_23300 PF01464 Transglycosylase SLT domain FDP11_23305 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein FDP11_23310 PF00800 Prephenate dehydratase FDP11_23310 PF01817 Chorismate mutase type II FDP11_23315 PF01931 Protein of unknown function DUF84 FDP11_23320 PF01371 Trp repressor protein FDP11_23325 PF14718 Soluble lytic murein transglycosylase L domain FDP11_23325 PF01464 Transglycosylase SLT domain FDP11_23330 PF00005 ABC transporter FDP11_23330 PF12848 ABC transporter FDP11_23340 PF07238 PilZ domain FDP11_23345 PF01551 Peptidase family M23 FDP11_23345 PF04225 Opacity-associated protein A LysM-like domain FDP11_23350 PF02153 Prephenate dehydrogenase FDP11_23350 PF01817 Chorismate mutase type II FDP11_23355 PF00793 DAHP synthetase I family FDP11_23360 PF00933 Glycosyl hydrolase family 3 N terminal domain FDP11_23365 PF03702 Anhydro-N-acetylmuramic acid kinase FDP11_23370 PF13580 SIS domain FDP11_23385 PF02554 Carbon starvation protein CstA FDP11_23390 PF06580 Histidine kinase FDP11_23390 PF07694 5TMR of 5TMR-LYT FDP11_23395 PF04397 LytTr DNA-binding domain FDP11_23395 PF00072 Response regulator receiver domain FDP11_23400 PF02401 LytB protein FDP11_23405 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FDP11_23410 PF01252 Signal peptidase (SPase) II FDP11_23415 PF00133 tRNA synthetases class I (I, L, M and V) FDP11_23415 PF06827 Zinc finger found in FPG and IleRS FDP11_23415 PF08264 Anticodon-binding domain of tRNA FDP11_23420 PF01687 Riboflavin kinase FDP11_23420 PF06574 FAD synthetase FDP11_23425 PF03023 Lipid II flippase MurJ FDP11_23430 PF01649 Ribosomal protein S20 FDP11_23440 PF01022 Bacterial regulatory protein, arsR family FDP11_23450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_23450 PF03466 LysR substrate binding domain FDP11_23455 PF02690 Na+/Pi-cotransporter FDP11_23465 PF00303 Thymidylate synthase FDP11_23470 PF01790 Prolipoprotein diacylglyceryl transferase FDP11_23475 PF01925 Sulfite exporter TauE/SafE FDP11_23480 PF02896 PEP-utilising enzyme, TIM barrel domain FDP11_23480 PF00391 PEP-utilising enzyme, mobile domain FDP11_23480 PF01590 GAF domain FDP11_23480 PF05524 PEP-utilising enzyme, N-terminal FDP11_23485 PF00293 NUDIX domain FDP11_23495 PF02976 DNA mismatch repair enzyme MutH FDP11_23505 PF00248 Aldo/keto reductase family FDP11_23515 PF02954 Bacterial regulatory protein, Fis family FDP11_23515 PF00072 Response regulator receiver domain FDP11_23515 PF00158 Sigma-54 interaction domain FDP11_23520 PF01336 OB-fold nucleic acid binding domain FDP11_23520 PF00152 tRNA synthetases class II (D, K and N) FDP11_23530 PF17768 RecJ OB domain FDP11_23530 PF02272 DHHA1 domain FDP11_23530 PF01368 DHH family FDP11_23535 PF10411 Disulfide bond isomerase protein N-terminus FDP11_23535 PF13098 Thioredoxin-like domain FDP11_23540 PF00589 Phage integrase family FDP11_23540 PF02899 Phage integrase, N-terminal SAM-like domain FDP11_23545 PF00258 Flavodoxin FDP11_23550 PF05525 Branched-chain amino acid transport protein FDP11_23555 PF05175 Methyltransferase small domain FDP11_23560 PF00270 DEAD/DEAH box helicase FDP11_23560 PF00271 Helicase conserved C-terminal domain FDP11_23565 PF03883 Peroxide stress protein YaaA FDP11_23570 PF01235 Sodium:alanine symporter family FDP11_23585 PF03167 Uracil DNA glycosylase superfamily FDP11_23595 PF01261 Xylose isomerase-like TIM barrel FDP11_23600 PF01228 Glycine radical FDP11_23605 PF14821 Threonine synthase N terminus FDP11_23605 PF00291 Pyridoxal-phosphate dependent enzyme FDP11_23610 PF00288 GHMP kinases N terminal domain FDP11_23610 PF08544 GHMP kinases C terminal FDP11_23615 PF03447 Homoserine dehydrogenase, NAD binding domain FDP11_23615 PF00742 Homoserine dehydrogenase FDP11_23615 PF00696 Amino acid kinase family FDP11_23615 PF01842 ACT domain FDP11_23615 PF13840 ACT domain FDP11_23625 PF03737 Aldolase/RraA FDP11_23640 PF00486 Transcriptional regulatory protein, C terminal FDP11_23640 PF00072 Response regulator receiver domain FDP11_23650 PF00072 Response regulator receiver domain FDP11_23650 PF01627 Hpt domain FDP11_23650 PF00989 PAS fold FDP11_23650 PF18415 Histidine kinase receptor ArcB trans-membrane domain FDP11_23650 PF00512 His Kinase A (phospho-acceptor) domain FDP11_23650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_23655 PF00990 Diguanylate cyclase, GGDEF domain FDP11_23655 PF01590 GAF domain FDP11_23655 PF00360 Phytochrome region FDP11_23655 PF00563 EAL domain FDP11_23660 PF16199 Radical_SAM C-terminal domain FDP11_23660 PF04055 Radical SAM superfamily FDP11_23665 PF01645 Conserved region in glutamate synthase FDP11_23665 PF00310 Glutamine amidotransferases class-II FDP11_23665 PF01493 GXGXG motif FDP11_23665 PF04898 Glutamate synthase central domain FDP11_23670 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster FDP11_23670 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDP11_23675 PF01645 Conserved region in glutamate synthase FDP11_23675 PF00310 Glutamine amidotransferases class-II FDP11_23675 PF01493 GXGXG motif FDP11_23675 PF04898 Glutamate synthase central domain FDP11_23680 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDP11_23680 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster FDP11_23690 PF01048 Phosphorylase superfamily FDP11_23695 PF03186 CobD/Cbib protein FDP11_23695 PF17113 Regulatory signalling modulator protein AmpE FDP11_23700 PF01497 Periplasmic binding protein FDP11_23705 PF03458 UPF0126 domain FDP11_23710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_23710 PF03466 LysR substrate binding domain FDP11_23725 PF01925 Sulfite exporter TauE/SafE FDP11_23740 PF02142 MGS-like domain FDP11_23740 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain FDP11_23740 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FDP11_23745 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain FDP11_23745 PF00117 Glutamine amidotransferase class-I FDP11_23750 PF01113 Dihydrodipicolinate reductase, N-terminus FDP11_23750 PF05173 Dihydrodipicolinate reductase, C-terminus FDP11_23755 PF00293 NUDIX domain FDP11_23760 PF01043 SecA preprotein cross-linking domain FDP11_23760 PF07516 SecA Wing and Scaffold domain FDP11_23760 PF07517 SecA DEAD-like domain FDP11_23760 PF02810 SEC-C motif FDP11_23770 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase FDP11_23775 PF12327 FtsZ family, C-terminal domain FDP11_23775 PF00091 Tubulin/FtsZ family, GTPase domain FDP11_23780 PF02491 SHS2 domain inserted in FTSA FDP11_23785 PF03799 Cell division protein FtsQ FDP11_23785 PF08478 POTRA domain, FtsQ-type FDP11_23790 PF01225 Mur ligase family, catalytic domain FDP11_23790 PF02875 Mur ligase family, glutamate ligase domain FDP11_23790 PF08245 Mur ligase middle domain FDP11_23795 PF03033 Glycosyltransferase family 28 N-terminal domain FDP11_23795 PF04101 Glycosyltransferase family 28 C-terminal domain FDP11_23800 PF01098 Cell cycle protein FDP11_23805 PF08245 Mur ligase middle domain FDP11_23805 PF02875 Mur ligase family, glutamate ligase domain FDP11_23810 PF00953 Glycosyl transferase family 4 FDP11_23810 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 FDP11_23815 PF02875 Mur ligase family, glutamate ligase domain FDP11_23815 PF08245 Mur ligase middle domain FDP11_23815 PF01225 Mur ligase family, catalytic domain FDP11_23820 PF08245 Mur ligase middle domain FDP11_23820 PF02875 Mur ligase family, glutamate ligase domain FDP11_23820 PF01225 Mur ligase family, catalytic domain FDP11_23825 PF00905 Penicillin binding protein transpeptidase domain FDP11_23825 PF03717 Penicillin-binding Protein dimerisation domain FDP11_23830 PF04999 Cell division protein FtsL FDP11_23835 PF01795 MraW methylase family FDP11_23850 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FDP11_23855 PF04348 LppC putative lipoprotein FDP11_23860 PF02021 Uncharacterised protein family UPF0102 FDP11_23865 PF13580 SIS domain FDP11_23870 PF04972 BON domain FDP11_23875 PF04386 Stringent starvation protein B FDP11_23880 PF02798 Glutathione S-transferase, N-terminal domain FDP11_23880 PF00043 Glutathione S-transferase, C-terminal domain FDP11_23885 PF02167 Cytochrome C1 family FDP11_23890 PF00032 Cytochrome b(C-terminal)/b6/petD FDP11_23890 PF00033 Cytochrome b/b6/petB FDP11_23895 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal FDP11_23895 PF00355 Rieske [2Fe-2S] domain FDP11_23900 PF00380 Ribosomal protein S9/S16 FDP11_23905 PF00572 Ribosomal protein L13 FDP11_23915 PF03969 AFG1-like ATPase FDP11_23925 PF06295 Protein of unknown function (DUF1043) FDP11_23930 PF00595 PDZ domain FDP11_23935 PF13180 PDZ domain FDP11_23940 PF03989 DNA gyrase C-terminal domain, beta-propeller FDP11_23940 PF00521 DNA gyrase/topoisomerase IV, subunit A FDP11_23945 PF00204 DNA gyrase B FDP11_23945 PF00986 DNA gyrase B subunit, carboxyl terminus FDP11_23945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_23945 PF01751 Toprim domain FDP11_23950 PF05728 Uncharacterised protein family (UPF0227) FDP11_23955 PF00149 Calcineurin-like phosphoesterase FDP11_23960 PF06853 Protein of unknown function (DUF1249) FDP11_23965 PF00293 NUDIX domain FDP11_23970 PF02321 Outer membrane efflux protein FDP11_23975 PF01467 Cytidylyltransferase-like FDP11_23975 PF00294 pfkB family carbohydrate kinase FDP11_23980 PF08335 GlnD PII-uridylyltransferase FDP11_23980 PF03710 Glutamate-ammonia ligase adenylyltransferase FDP11_23985 PF00672 HAMP domain FDP11_23985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDP11_23995 PF01928 CYTH domain FDP11_24000 PF01865 Protein of unknown function DUF47 FDP11_24005 PF01384 Phosphate transporter family FDP11_24010 PF08239 Bacterial SH3 domain FDP11_24020 PF13401 AAA domain FDP11_24020 PF01471 Putative peptidoglycan binding domain FDP11_24025 PF01966 HD domain FDP11_24025 PF01743 Poly A polymerase head domain FDP11_24025 PF12627 Probable RNA and SrmB- binding site of polymerase A FDP11_24030 PF02673 Bacitracin resistance protein BacA FDP11_24035 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) FDP11_24040 PF02152 Dihydroneopterin aldolase FDP11_24045 PF02660 Glycerol-3-phosphate acyltransferase FDP11_24050 PF12697 Alpha/beta hydrolase family FDP11_24055 PF00814 Glycoprotease family FDP11_24060 PF01165 Ribosomal protein S21 FDP11_24065 PF09424 Yqey-like protein FDP11_24070 PF08275 DNA primase catalytic core, N-terminal domain FDP11_24070 PF10410 DnaB-helicase binding domain of primase FDP11_24070 PF01807 CHC2 zinc finger FDP11_24070 PF08278 DNA primase DnaG DnaB-binding FDP11_24075 PF04546 Sigma-70, non-essential region FDP11_24075 PF03979 Sigma-70 factor, region 1.1 FDP11_24075 PF00140 Sigma-70 factor, region 1.2 FDP11_24075 PF04539 Sigma-70 region 3 FDP11_24075 PF04545 Sigma-70, region 4 FDP11_24075 PF04542 Sigma-70 region 2 FDP11_24085 PF13356 Arm DNA-binding domain FDP11_24085 PF00589 Phage integrase family FDP11_24100 PF13581 Histidine kinase-like ATPase domain FDP11_24120 PF04002 RadC-like JAB domain FDP11_24165 PF00075 RNase H FDP11_24195 PF03180 NLPA lipoprotein FDP11_24230 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FDP11_24230 PF02378 Phosphotransferase system, EIIC FDP11_24230 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FDP11_24235 PF08125 Mannitol dehydrogenase C-terminal domain FDP11_24235 PF01232 Mannitol dehydrogenase Rossmann domain FDP11_24240 PF05068 Mannitol repressor FDP11_24245 PF13419 Haloacid dehalogenase-like hydrolase FDP11_24250 PF00512 His Kinase A (phospho-acceptor) domain FDP11_24250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_24250 PF00672 HAMP domain FDP11_24255 PF00486 Transcriptional regulatory protein, C terminal FDP11_24255 PF00072 Response regulator receiver domain FDP11_24265 PF01380 SIS domain FDP11_24270 PF00455 DeoR C terminal sensor domain FDP11_24270 PF08220 DeoR-like helix-turn-helix domain FDP11_24280 PF00224 Pyruvate kinase, barrel domain FDP11_24280 PF02887 Pyruvate kinase, alpha/beta domain FDP11_24290 PF07694 5TMR of 5TMR-LYT FDP11_24290 PF00990 Diguanylate cyclase, GGDEF domain FDP11_24295 PF10369 Small subunit of acetolactate synthase FDP11_24300 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FDP11_24300 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FDP11_24300 PF00205 Thiamine pyrophosphate enzyme, central domain FDP11_24305 PF00501 AMP-binding enzyme FDP11_24310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_24310 PF03466 LysR substrate binding domain FDP11_24330 PF00682 HMGL-like FDP11_24330 PF08502 LeuA allosteric (dimerisation) domain FDP11_24335 PF00180 Isocitrate/isopropylmalate dehydrogenase FDP11_24340 PF00330 Aconitase family (aconitate hydratase) FDP11_24345 PF00694 Aconitase C-terminal domain FDP11_24355 PF00226 DnaJ domain FDP11_24355 PF05099 Tellurite resistance protein TerB FDP11_24360 PF03968 OstA-like protein FDP11_24360 PF04453 LPS transport system D FDP11_24365 PF09312 SurA N-terminal domain FDP11_24370 PF04166 Pyridoxal phosphate biosynthetic protein PdxA FDP11_24375 PF00398 Ribosomal RNA adenine dimethylase FDP11_24380 PF04379 ApaG domain FDP11_24385 PF00149 Calcineurin-like phosphoesterase FDP11_24390 PF00186 Dihydrofolate reductase FDP11_24395 PF12821 Threonine/Serine exporter, ThrE FDP11_24400 PF06738 Putative threonine/serine exporter FDP11_24405 PF01926 50S ribosome-binding GTPase FDP11_24405 PF01018 GTP1/OBG FDP11_24410 PF01016 Ribosomal L27 protein FDP11_24415 PF00829 Ribosomal prokaryotic L21 protein FDP11_24420 PF00348 Polyprenyl synthetase FDP11_24430 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain FDP11_24430 PF00056 lactate/malate dehydrogenase, NAD binding domain FDP11_24435 PF02863 Arginine repressor, C-terminal domain FDP11_24435 PF01316 Arginine repressor, DNA binding domain FDP11_24445 PF16868 NMT1-like family FDP11_24465 PF00005 ABC transporter FDP11_24470 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_24480 PF02441 Flavoprotein FDP11_24485 PF01225 Mur ligase family, catalytic domain FDP11_24485 PF02875 Mur ligase family, glutamate ligase domain FDP11_24485 PF08245 Mur ligase middle domain FDP11_24495 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain FDP11_24500 PF00719 Inorganic pyrophosphatase FDP11_24510 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like FDP11_24515 PF04357 TamB, inner membrane protein subunit of TAM complex FDP11_24520 PF01103 Surface antigen FDP11_24520 PF17243 POTRA domain TamA domain 1 FDP11_24525 PF01625 Peptide methionine sulfoxide reductase FDP11_24530 PF06526 Protein of unknown function (DUF1107) FDP11_24535 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) FDP11_24540 PF10795 Protein of unknown function (DUF2607) FDP11_24550 PF00005 ABC transporter FDP11_24575 PF02080 TrkA-C domain FDP11_24575 PF03600 Citrate transporter FDP11_24585 PF00009 Elongation factor Tu GTP binding domain FDP11_24590 PF01507 Phosphoadenosine phosphosulfate reductase family FDP11_24595 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FDP11_24595 PF10414 Sirohaem synthase dimerisation region FDP11_24595 PF14824 Sirohaem biosynthesis protein central FDP11_24600 PF02872 5'-nucleotidase, C-terminal domain FDP11_24600 PF00149 Calcineurin-like phosphoesterase FDP11_24610 PF03880 DbpA RNA binding domain FDP11_24610 PF00270 DEAD/DEAH box helicase FDP11_24610 PF00271 Helicase conserved C-terminal domain FDP11_24615 PF13673 Acetyltransferase (GNAT) domain FDP11_24625 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FDP11_24625 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FDP11_24635 PF01196 Ribosomal protein L17 FDP11_24640 PF01000 RNA polymerase Rpb3/RpoA insert domain FDP11_24640 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain FDP11_24640 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain FDP11_24645 PF00163 Ribosomal protein S4/S9 N-terminal domain FDP11_24645 PF01479 S4 domain FDP11_24650 PF00411 Ribosomal protein S11 FDP11_24655 PF00416 Ribosomal protein S13/S18 FDP11_24660 PF00444 Ribosomal protein L36 FDP11_24665 PF00344 SecY translocase FDP11_24670 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A FDP11_24675 PF00327 Ribosomal protein L30p/L7e FDP11_24680 PF03719 Ribosomal protein S5, C-terminal domain FDP11_24680 PF00333 Ribosomal protein S5, N-terminal domain FDP11_24685 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast FDP11_24690 PF00347 Ribosomal protein L6 FDP11_24695 PF00410 Ribosomal protein S8 FDP11_24700 PF00253 Ribosomal protein S14p/S29e FDP11_24705 PF00281 Ribosomal protein L5 FDP11_24705 PF00673 ribosomal L5P family C-terminus FDP11_24710 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 FDP11_24710 PF00467 KOW motif FDP11_24715 PF00238 Ribosomal protein L14p/L23e FDP11_24720 PF00366 Ribosomal protein S17 FDP11_24725 PF00831 Ribosomal L29 protein FDP11_24730 PF00252 Ribosomal protein L16p/L10e FDP11_24735 PF07650 KH domain FDP11_24735 PF00189 Ribosomal protein S3, C-terminal domain FDP11_24740 PF00237 Ribosomal protein L22p/L17e FDP11_24745 PF00203 Ribosomal protein S19 FDP11_24750 PF00181 Ribosomal Proteins L2, RNA binding domain FDP11_24750 PF03947 Ribosomal Proteins L2, C-terminal domain FDP11_24755 PF00276 Ribosomal protein L23 FDP11_24760 PF00573 Ribosomal protein L4/L1 family FDP11_24765 PF00297 Ribosomal protein L3 FDP11_24770 PF00338 Ribosomal protein S10p/S20e FDP11_24775 PF01197 Ribosomal protein L31 FDP11_24785 PF17764 3′ DNA-binding domain (3′BD) FDP11_24785 PF18319 PriA DNA helicase Cys-rich region (CRR) domain FDP11_24785 PF00270 DEAD/DEAH box helicase FDP11_24785 PF18074 Primosomal protein N C-terminal domain FDP11_24785 PF00271 Helicase conserved C-terminal domain FDP11_24790 PF00356 Bacterial regulatory proteins, lacI family FDP11_24800 PF00227 Proteasome subunit FDP11_24805 PF07724 AAA domain (Cdc48 subfamily) FDP11_24805 PF00004 ATPase family associated with various cellular activities (AAA) FDP11_24810 PF01040 UbiA prenyltransferase family FDP11_24815 PF03737 Aldolase/RraA FDP11_24820 PF06005 Cell division protein ZapB FDP11_24830 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded FDP11_24835 PF00455 DeoR C terminal sensor domain FDP11_24835 PF08220 DeoR-like helix-turn-helix domain FDP11_24855 PF00121 Triosephosphate isomerase FDP11_24860 PF00483 Nucleotidyl transferase FDP11_24865 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FDP11_24865 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain FDP11_24865 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain FDP11_24880 PF00535 Glycosyl transferase family 2 FDP11_24890 PF02080 TrkA-C domain FDP11_24890 PF03600 Citrate transporter FDP11_24920 PF00535 Glycosyl transferase family 2 FDP11_24930 PF00293 NUDIX domain FDP11_24935 PF01370 NAD dependent epimerase/dehydratase family FDP11_24940 PF16363 GDP-mannose 4,6 dehydratase FDP11_24945 PF00132 Bacterial transferase hexapeptide (six repeats) FDP11_24950 PF05159 Capsule polysaccharide biosynthesis protein FDP11_24955 PF01380 SIS domain FDP11_24955 PF00571 CBS domain FDP11_24960 PF02348 Cytidylyltransferase FDP11_24965 PF00793 DAHP synthetase I family FDP11_24990 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FDP11_24990 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FDP11_24990 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FDP11_24990 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FDP11_24995 PF00483 Nucleotidyl transferase FDP11_24995 PF01050 Mannose-6-phosphate isomerase FDP11_25005 PF16363 GDP-mannose 4,6 dehydratase FDP11_25010 PF04321 RmlD substrate binding domain FDP11_25015 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase FDP11_25020 PF00483 Nucleotidyl transferase FDP11_25030 PF00005 ABC transporter FDP11_25035 PF01061 ABC-2 type transporter FDP11_25040 PF10531 SLBB domain FDP11_25040 PF02563 Polysaccharide biosynthesis/export protein FDP11_25045 PF00953 Glycosyl transferase family 4 FDP11_25055 PF03958 Bacterial type II/III secretion system short domain FDP11_25055 PF00263 Bacterial type II and III secretion system protein FDP11_25075 PF03934 Type II secretion system (T2SS), protein K FDP11_25090 PF08334 Type II secretion system (T2SS), protein G FDP11_25090 PF07963 Prokaryotic N-terminal methylation motif FDP11_25095 PF00482 Type II secretion system (T2SS), protein F FDP11_25100 PF00437 Type II/IV secretion system protein FDP11_25100 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain FDP11_25105 PF07963 Prokaryotic N-terminal methylation motif FDP11_25105 PF08334 Type II secretion system (T2SS), protein G FDP11_25115 PF01507 Phosphoadenosine phosphosulfate reductase family FDP11_25130 PF00009 Elongation factor Tu GTP binding domain FDP11_25135 PF00953 Glycosyl transferase family 4 FDP11_25145 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF FDP11_25155 PF06082 Exopolysaccharide biosynthesis protein YbjH FDP11_25160 PF01370 NAD dependent epimerase/dehydratase family FDP11_25165 PF03279 Bacterial lipid A biosynthesis acyltransferase FDP11_25170 PF01075 Glycosyltransferase family 9 (heptosyltransferase) FDP11_25175 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) FDP11_25185 PF02348 Cytidylyltransferase FDP11_25190 PF00483 Nucleotidyl transferase FDP11_25200 PF03102 NeuB family FDP11_25200 PF08666 SAF domain FDP11_25205 PF02350 UDP-N-acetylglucosamine 2-epimerase FDP11_25210 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family FDP11_25215 PF02719 Polysaccharide biosynthesis protein FDP11_25220 PF00132 Bacterial transferase hexapeptide (six repeats) FDP11_25235 PF11893 Domain of unknown function (DUF3413) FDP11_25235 PF00884 Sulfatase FDP11_25245 PF01219 Prokaryotic diacylglycerol kinase FDP11_25250 PF01075 Glycosyltransferase family 9 (heptosyltransferase) FDP11_25255 PF00535 Glycosyl transferase family 2 FDP11_25260 PF00534 Glycosyl transferases group 1 FDP11_25265 PF01467 Cytidylyltransferase-like FDP11_25275 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain FDP11_25275 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain FDP11_25275 PF06827 Zinc finger found in FPG and IleRS FDP11_25285 PF00471 Ribosomal protein L33 FDP11_25290 PF00830 Ribosomal L28 family FDP11_25295 PF04002 RadC-like JAB domain FDP11_25300 PF00672 HAMP domain FDP11_25300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDP11_25300 PF17200 Single Cache domain 2 FDP11_25310 PF04127 DNA / pantothenate metabolism flavoprotein FDP11_25310 PF02441 Flavoprotein FDP11_25315 PF00440 Bacterial regulatory proteins, tetR family FDP11_25320 PF03279 Bacterial lipid A biosynthesis acyltransferase FDP11_25325 PF00156 Phosphoribosyl transferase domain FDP11_25330 PF01138 3' exoribonuclease family, domain 1 FDP11_25330 PF03725 3' exoribonuclease family, domain 2 FDP11_25335 PF08340 Domain of unknown function (DUF1732) FDP11_25335 PF03755 YicC-like family, N-terminal region FDP11_25345 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FDP11_25345 PF00005 ABC transporter FDP11_25350 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FDP11_25350 PF00005 ABC transporter FDP11_25355 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FDP11_25360 PF12911 N-terminal TM domain of oligopeptide transport permease C FDP11_25360 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_25365 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_25375 PF00593 TonB dependent receptor FDP11_25375 PF07715 TonB-dependent Receptor Plug Domain FDP11_25390 PF01618 MotA/TolQ/ExbB proton channel family FDP11_25395 PF02472 Biopolymer transport protein ExbD/TolR FDP11_25410 PF00625 Guanylate kinase FDP11_25415 PF01192 RNA polymerase Rpb6 FDP11_25420 PF04607 Region found in RelA / SpoT proteins FDP11_25420 PF02824 TGS domain FDP11_25420 PF13291 ACT domain FDP11_25425 PF00588 SpoU rRNA Methylase family FDP11_25425 PF12105 SpoU, rRNA methylase, C-terminal FDP11_25430 PF17191 RecG wedge domain FDP11_25430 PF00271 Helicase conserved C-terminal domain FDP11_25430 PF00270 DEAD/DEAH box helicase FDP11_25440 PF00860 Permease family FDP11_25445 PF00512 His Kinase A (phospho-acceptor) domain FDP11_25445 PF00672 HAMP domain FDP11_25445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_25450 PF00486 Transcriptional regulatory protein, C terminal FDP11_25450 PF00072 Response regulator receiver domain FDP11_25460 PF03449 Transcription elongation factor, N-terminal FDP11_25460 PF01272 Transcription elongation factor, GreA/GreB, C-term FDP11_25470 PF09371 Tex-like protein N-terminal domain FDP11_25470 PF16921 Tex protein YqgF-like domain FDP11_25470 PF00575 S1 RNA binding domain FDP11_25470 PF17674 HHH domain FDP11_25480 PF00561 alpha/beta hydrolase fold FDP11_25485 PF00156 Phosphoribosyl transferase domain FDP11_25490 PF01106 NifU-like domain FDP11_25490 PF01521 Iron-sulphur cluster biosynthesis FDP11_25495 PF00293 NUDIX domain FDP11_25500 PF00459 Inositol monophosphatase family FDP11_25505 PF01203 Type II secretion system (T2SS), protein N FDP11_25510 PF04612 Type II secretion system (T2SS), protein M FDP11_25515 PF12693 GspL periplasmic domain FDP11_25515 PF05134 Type II secretion system (T2SS), protein L FDP11_25520 PF03934 Type II secretion system (T2SS), protein K FDP11_25525 PF11612 Type II secretion system (T2SS), protein J FDP11_25525 PF07963 Prokaryotic N-terminal methylation motif FDP11_25530 PF02501 Type II secretion system (T2SS), protein I FDP11_25530 PF07963 Prokaryotic N-terminal methylation motif FDP11_25535 PF12019 Type II transport protein GspH FDP11_25540 PF08334 Type II secretion system (T2SS), protein G FDP11_25540 PF07963 Prokaryotic N-terminal methylation motif FDP11_25545 PF00482 Type II secretion system (T2SS), protein F FDP11_25550 PF00437 Type II/IV secretion system protein FDP11_25555 PF00263 Bacterial type II and III secretion system protein FDP11_25555 PF03958 Bacterial type II/III secretion system short domain FDP11_25560 PF11356 Type II secretion system protein C FDP11_25565 PF01479 S4 domain FDP11_25570 PF01430 Hsp33 protein FDP11_25575 PF01293 Phosphoenolpyruvate carboxykinase FDP11_25585 PF09500 Putative thioesterase (yiiD_Cterm) FDP11_25585 PF00583 Acetyltransferase (GNAT) family FDP11_25590 PF02580 D-Tyr-tRNA(Tyr) deacylase FDP11_25595 PF03631 Virulence factor BrkB FDP11_25615 PF03951 Glutamine synthetase, beta-Grasp domain FDP11_25615 PF00120 Glutamine synthetase, catalytic domain FDP11_25625 PF00512 His Kinase A (phospho-acceptor) domain FDP11_25625 PF00989 PAS fold FDP11_25625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_25630 PF02954 Bacterial regulatory protein, Fis family FDP11_25630 PF00072 Response regulator receiver domain FDP11_25630 PF00158 Sigma-54 interaction domain FDP11_25635 PF03707 Bacterial signalling protein N terminal repeat FDP11_25635 PF00990 Diguanylate cyclase, GGDEF domain FDP11_25635 PF00563 EAL domain FDP11_25640 PF00962 Adenosine/AMP deaminase FDP11_25645 PF06969 HemN C-terminal domain FDP11_25645 PF04055 Radical SAM superfamily FDP11_25650 PF10675 Protein of unknown function (DUF2489) FDP11_25655 PF04220 Der GTPase activator (YihI) FDP11_25670 PF00034 Cytochrome c FDP11_25675 PF01926 50S ribosome-binding GTPase FDP11_25685 PF01612 3'-5' exonuclease FDP11_25685 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain FDP11_25685 PF01367 5'-3' exonuclease, C-terminal SAM fold FDP11_25685 PF00476 DNA polymerase family A FDP11_25700 PF00490 Delta-aminolevulinic acid dehydratase FDP11_25710 PF01026 TatD related DNase FDP11_25720 PF00902 Sec-independent protein translocase protein (TatC) FDP11_25725 PF02416 mttA/Hcf106 family FDP11_25730 PF02416 mttA/Hcf106 family FDP11_25735 PF03109 ABC1 family FDP11_25740 PF02036 SCP-2 sterol transfer family FDP11_25745 PF01209 ubiE/COQ5 methyltransferase family FDP11_25750 PF02646 RmuC family FDP11_25760 PF03707 Bacterial signalling protein N terminal repeat FDP11_25760 PF00990 Diguanylate cyclase, GGDEF domain FDP11_25760 PF00563 EAL domain FDP11_25765 PF01594 AI-2E family transporter FDP11_25820 PF00158 Sigma-54 interaction domain FDP11_25820 PF02954 Bacterial regulatory protein, Fis family FDP11_25820 PF01590 GAF domain FDP11_25830 PF10625 Universal stress protein B (UspB) FDP11_25835 PF00210 Ferritin-like domain FDP11_25840 PF00582 Universal stress protein family FDP11_25845 PF00892 EamA-like transporter family FDP11_25855 PF04445 Putative SAM-dependent methyltransferase FDP11_25860 PF00563 EAL domain FDP11_25860 PF08448 PAS fold FDP11_25860 PF00990 Diguanylate cyclase, GGDEF domain FDP11_25865 PF01037 Lrp/AsnC ligand binding domain FDP11_25870 PF01432 Peptidase family M3 FDP11_25875 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ FDP11_25880 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FDP11_25880 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDP11_25885 PF03466 LysR substrate binding domain FDP11_25885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_25890 PF01048 Phosphorylase superfamily FDP11_25895 PF01081 KDPG and KHG aldolase FDP11_25900 PF02447 GntP family permease FDP11_25905 PF01202 Shikimate kinase FDP11_25910 PF00920 Dehydratase family FDP11_25915 PF00893 Small Multidrug Resistance protein FDP11_25920 PF00893 Small Multidrug Resistance protein FDP11_25925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_25925 PF03466 LysR substrate binding domain FDP11_25930 PF00356 Bacterial regulatory proteins, lacI family FDP11_25930 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family FDP11_25935 PF00069 Protein kinase domain FDP11_25970 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_25970 PF12911 N-terminal TM domain of oligopeptide transport permease C FDP11_25980 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FDP11_25985 PF00005 ABC transporter FDP11_25985 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FDP11_26000 PF13419 Haloacid dehalogenase-like hydrolase FDP11_26035 PF13442 Cytochrome C oxidase, cbb3-type, subunit III FDP11_26040 PF13361 UvrD-like helicase C-terminal domain FDP11_26040 PF00580 UvrD/REP helicase N-terminal domain FDP11_26045 PF00440 Bacterial regulatory proteins, tetR family FDP11_26045 PF16295 Tetracyclin repressor-like, C-terminal domain FDP11_26050 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDP11_26055 PF00873 AcrB/AcrD/AcrF family FDP11_26065 PF04380 Membrane fusogenic activity FDP11_26070 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain FDP11_26070 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain FDP11_26075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_26075 PF03466 LysR substrate binding domain FDP11_26120 PF00132 Bacterial transferase hexapeptide (six repeats) FDP11_26125 PF07369 Protein of unknown function (DUF1488) FDP11_26130 PF18317 Shikimate 5'-dehydrogenase C-terminal domain FDP11_26130 PF01488 Shikimate / quinate 5-dehydrogenase FDP11_26130 PF08501 Shikimate dehydrogenase substrate binding domain FDP11_26135 PF01218 Coproporphyrinogen III oxidase FDP11_26140 PF01300 Telomere recombination FDP11_26145 PF00731 AIR carboxylase FDP11_26150 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain FDP11_26150 PF02222 ATP-grasp domain FDP11_26155 PF01396 Topoisomerase DNA binding C4 zinc finger FDP11_26160 PF04361 Protein of unknown function (DUF494) FDP11_26165 PF17782 DprA winged helix domain FDP11_26165 PF02481 DNA recombination-mediator protein A FDP11_26175 PF01327 Polypeptide deformylase FDP11_26180 PF00551 Formyl transferase FDP11_26180 PF02911 Formyl transferase, C-terminal domain FDP11_26185 PF01029 NusB family FDP11_26185 PF01189 16S rRNA methyltransferase RsmB/F FDP11_26190 PF02254 TrkA-N domain FDP11_26190 PF02080 TrkA-C domain FDP11_26195 PF02386 Cation transport protein FDP11_26205 PF03006 Haemolysin-III related FDP11_26210 PF07070 SpoOM protein FDP11_26220 PF06288 Protein of unknown function (DUF1040) FDP11_26225 PF13746 4Fe-4S dicluster domain FDP11_26225 PF12801 4Fe-4S binding domain FDP11_26225 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase FDP11_26230 PF01636 Phosphotransferase enzyme family FDP11_26235 PF01323 DSBA-like thioredoxin domain FDP11_26240 PF01553 Acyltransferase FDP11_26250 PF01078 Magnesium chelatase, subunit ChlI FDP11_26250 PF13335 Magnesium chelatase, subunit ChlI C-terminal FDP11_26255 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FDP11_26255 PF00205 Thiamine pyrophosphate enzyme, central domain FDP11_26255 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FDP11_26265 PF01063 Amino-transferase class IV FDP11_26270 PF00920 Dehydratase family FDP11_26275 PF00585 C-terminal regulatory domain of Threonine dehydratase FDP11_26275 PF00291 Pyridoxal-phosphate dependent enzyme FDP11_26280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_26280 PF03466 LysR substrate binding domain FDP11_26285 PF07690 Major Facilitator Superfamily FDP11_26290 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDP11_26295 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_26300 PF00132 Bacterial transferase hexapeptide (six repeats) FDP11_26300 PF12804 MobA-like NTP transferase domain FDP11_26305 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain FDP11_26305 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain FDP11_26310 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FDP11_26310 PF02874 ATP synthase alpha/beta family, beta-barrel domain FDP11_26315 PF00231 ATP synthase FDP11_26320 PF00306 ATP synthase alpha/beta chain, C terminal domain FDP11_26320 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FDP11_26320 PF02874 ATP synthase alpha/beta family, beta-barrel domain FDP11_26325 PF00213 ATP synthase delta (OSCP) subunit FDP11_26330 PF00430 ATP synthase B/B' CF(0) FDP11_26335 PF00137 ATP synthase subunit C FDP11_26340 PF00119 ATP synthase A chain FDP11_26345 PF03899 ATP synthase I chain FDP11_26350 PF17762 HTH domain found in ParB protein FDP11_26350 PF02195 ParB-like nuclease domain FDP11_26355 PF13614 AAA domain FDP11_26360 PF02527 rRNA small subunit methyltransferase G FDP11_26365 PF01134 Glucose inhibited division protein A FDP11_26365 PF13932 GidA associated domain FDP11_26370 PF00258 Flavodoxin FDP11_26375 PF01926 50S ribosome-binding GTPase FDP11_26375 PF12631 MnmE helical domain FDP11_26375 PF10396 GTP-binding protein TrmE N-terminus FDP11_26380 PF02096 60Kd inner membrane protein FDP11_26380 PF14849 YidC periplasmic domain FDP11_26385 PF01809 Putative membrane protein insertion efficiency factor FDP11_26390 PF00825 Ribonuclease P FDP11_26395 PF00468 Ribosomal protein L34 FDP11_26400 PF00005 ABC transporter FDP11_26405 PF00528 Binding-protein-dependent transport system inner membrane component FDP11_26410 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDP11_26425 PF08299 Bacterial dnaA protein helix-turn-helix FDP11_26425 PF00308 Bacterial dnaA protein FDP11_26425 PF11638 DnaA N-terminal domain FDP11_26430 PF00712 DNA polymerase III beta subunit, N-terminal domain FDP11_26430 PF02767 DNA polymerase III beta subunit, central domain FDP11_26430 PF02768 DNA polymerase III beta subunit, C-terminal domain FDP11_26435 PF02463 RecF/RecN/SMC N terminal domain FDP11_26440 PF18053 DNA gyrase B subunit insert domain FDP11_26440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDP11_26440 PF01751 Toprim domain FDP11_26440 PF00204 DNA gyrase B FDP11_26440 PF00986 DNA gyrase B subunit, carboxyl terminus FDP11_26460 PF00011 Hsp20/alpha crystallin family FDP11_26465 PF00155 Aminotransferase class I and II FDP11_26470 PF00128 Alpha amylase, catalytic domain FDP11_26475 PF05746 DALR anticodon binding domain FDP11_26475 PF02092 Glycyl-tRNA synthetase beta subunit FDP11_26480 PF02091 Glycyl-tRNA synthetase alpha subunit FDP11_26485 PF01169 Uncharacterized protein family UPF0016 FDP11_26495 PF01206 Sulfurtransferase TusA FDP11_26505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_26505 PF03466 LysR substrate binding domain FDP11_26510 PF08240 Alcohol dehydrogenase GroES-like domain FDP11_26510 PF00107 Zinc-binding dehydrogenase FDP11_26515 PF00108 Thiolase, N-terminal domain FDP11_26515 PF02803 Thiolase, C-terminal domain FDP11_26520 PF00378 Enoyl-CoA hydratase/isomerase FDP11_26520 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FDP11_26520 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FDP11_26525 PF01205 Uncharacterized protein family UPF0029 FDP11_26525 PF09186 Domain of unknown function (DUF1949) FDP11_26530 PF02386 Cation transport protein FDP11_26535 PF12724 Flavodoxin domain FDP11_26585 PF13358 DDE superfamily endonuclease FDP11_26595 PF02537 CrcB-like protein, Camphor Resistance (CrcB) FDP11_26600 PF01964 Radical SAM ThiC family FDP11_26600 PF13667 ThiC-associated domain FDP11_26605 PF02581 Thiamine monophosphate synthase FDP11_26610 PF00899 ThiF family FDP11_26615 PF02597 ThiS family FDP11_26620 PF05690 Thiazole biosynthesis protein ThiG FDP11_26625 PF04055 Radical SAM superfamily FDP11_26625 PF06968 Biotin and Thiamin Synthesis associated domain FDP11_26630 PF00557 Metallopeptidase family M24 FDP11_26630 PF00557 Metallopeptidase family M24 FDP11_26630 PF01321 Creatinase/Prolidase N-terminal domain FDP11_26630 PF01321 Creatinase/Prolidase N-terminal domain FDP11_26635 PF03466 LysR substrate binding domain FDP11_26635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDP11_26640 PF07690 Major Facilitator Superfamily FDP11_26660 PF05114 Protein of unknown function (DUF692) FDP11_26670 PF00580 UvrD/REP helicase N-terminal domain FDP11_26670 PF13361 UvrD-like helicase C-terminal domain FDP11_26685 PF01810 LysE type translocator FDP11_26695 PF00892 EamA-like transporter family FDP11_26700 PF00270 DEAD/DEAH box helicase FDP11_26700 PF00271 Helicase conserved C-terminal domain FDP11_26700 PF09382 RQC domain FDP11_26700 PF00570 HRDC domain FDP11_26700 PF16124 RecQ zinc-binding FDP11_26715 PF02592 Putative vitamin uptake transporter FDP11_26720 PF02541 Ppx/GppA phosphatase family FDP11_26725 PF00271 Helicase conserved C-terminal domain FDP11_26725 PF00270 DEAD/DEAH box helicase FDP11_26730 PF00085 Thioredoxin FDP11_26735 PF07498 Rho termination factor, N-terminal domain FDP11_26735 PF07497 Rho termination factor, RNA-binding domain FDP11_26735 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FDP11_26750 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase FDP11_26755 PF00111 2Fe-2S iron-sulfur cluster binding domain FDP11_26760 PF00175 Oxidoreductase NAD-binding domain FDP11_26810 PF07219 HemY protein N-terminus FDP11_26815 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase FDP11_26820 PF02602 Uroporphyrinogen-III synthase HemD FDP11_26825 PF03900 Porphobilinogen deaminase, C-terminal domain FDP11_26825 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain FDP11_26830 PF01295 Adenylate cyclase, class-I FDP11_26830 PF12633 Adenylate cyclase NT domain FDP11_26835 PF01491 Frataxin-like domain FDP11_26845 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain FDP11_26845 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain FDP11_26850 PF01678 Diaminopimelate epimerase