locus-tag class description M634_00085 PF01507 Phosphoadenosine phosphosulfate reductase family M634_00090 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M634_00090 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M634_00095 PF00667 FAD binding domain M634_00095 PF00175 Oxidoreductase NAD-binding domain M634_00095 PF00258 Flavodoxin M634_00115 PF01207 Dihydrouridine synthase (Dus) M634_00120 PF01475 Ferric uptake regulator family M634_00130 PF00342 Phosphoglucose isomerase M634_00140 PF01894 Uncharacterised protein family UPF0047 M634_00150 PF01168 Alanine racemase, N-terminal domain M634_00150 PF00842 Alanine racemase, C-terminal domain M634_00155 PF00772 DnaB-like helicase N terminal domain M634_00155 PF03796 DnaB-like helicase C terminal domain M634_00165 PF01281 Ribosomal protein L9, N-terminal domain M634_00165 PF03948 Ribosomal protein L9, C-terminal domain M634_00170 PF01084 Ribosomal protein S18 M634_00175 PF00436 Single-strand binding protein family M634_00180 PF01250 Ribosomal protein S6 M634_00185 PF00834 Ribulose-phosphate 3 epimerase family M634_00190 PF02086 D12 class N6 adenine-specific DNA methyltransferase M634_00200 PF01761 3-dehydroquinate synthase M634_00205 PF01202 Shikimate kinase M634_00210 PF11741 AMIN domain M634_00210 PF03958 Bacterial type II/III secretion system short domain M634_00210 PF07660 Secretin and TonB N terminus short domain M634_00210 PF00263 Bacterial type II and III secretion system protein M634_00235 PF00905 Penicillin binding protein transpeptidase domain M634_00235 PF00912 Transglycosylase M634_00235 PF17092 Penicillin-binding protein OB-like domain M634_00240 PF03466 LysR substrate binding domain M634_00240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_00245 PF00462 Glutaredoxin M634_00245 PF08534 Redoxin M634_00260 PF00206 Lyase M634_00260 PF14698 Argininosuccinate lyase C-terminal M634_00260 PF00583 Acetyltransferase (GNAT) family M634_00265 PF00764 Arginosuccinate synthase M634_00270 PF00696 Amino acid kinase family M634_00275 PF02774 Semialdehyde dehydrogenase, dimerisation domain M634_00275 PF01118 Semialdehyde dehydrogenase, NAD binding domain M634_00280 PF07687 Peptidase dimerisation domain M634_00280 PF01546 Peptidase family M20/M25/M40 M634_00285 PF00311 Phosphoenolpyruvate carboxylase M634_00295 PF02219 Methylenetetrahydrofolate reductase M634_00300 PF03447 Homoserine dehydrogenase, NAD binding domain M634_00300 PF00742 Homoserine dehydrogenase M634_00300 PF00696 Amino acid kinase family M634_00305 PF01053 Cys/Met metabolism PLP-dependent enzyme M634_00310 PF01340 Met Apo-repressor, MetJ M634_00315 PF03949 Malic enzyme, NAD binding domain M634_00315 PF00390 Malic enzyme, N-terminal domain M634_00320 PF00210 Ferritin-like domain M634_00325 PF04324 BFD-like [2Fe-2S] binding domain M634_00330 PF00009 Elongation factor Tu GTP binding domain M634_00330 PF03143 Elongation factor Tu C-terminal domain M634_00330 PF03144 Elongation factor Tu domain 2 M634_00335 PF03144 Elongation factor Tu domain 2 M634_00335 PF00009 Elongation factor Tu GTP binding domain M634_00335 PF03764 Elongation factor G, domain IV M634_00335 PF14492 Elongation Factor G, domain II M634_00335 PF00679 Elongation factor G C-terminus M634_00340 PF00177 Ribosomal protein S7p/S5e M634_00345 PF00164 Ribosomal protein S12/S23 M634_00350 PF04077 DsrH like protein M634_00355 PF02635 DsrE/DsrF-like family M634_00360 PF02635 DsrE/DsrF-like family M634_00365 PF08348 YheO-like PAS domain M634_00365 PF13309 HTH domain M634_00370 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M634_00370 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M634_00380 PF04102 SlyX M634_00385 PF01112 Asparaginase M634_00390 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M634_00400 PF02254 TrkA-N domain M634_00400 PF00999 Sodium/hydrogen exchanger family M634_00405 PF02525 Flavodoxin-like fold M634_00410 PF00005 ABC transporter M634_00410 PF12848 ABC transporter M634_00420 PF00561 alpha/beta hydrolase fold M634_00425 PF06794 Uncharacterised protein family (UPF0270) M634_00430 PF00485 Phosphoribulokinase / Uridine kinase family M634_00435 PF00027 Cyclic nucleotide-binding domain M634_00435 PF13545 Crp-like helix-turn-helix domain M634_00445 PF00171 Aldehyde dehydrogenase family M634_00450 PF04958 Arginine N-succinyltransferase beta subunit M634_00455 PF00202 Aminotransferase class-III M634_00460 PF00117 Glutamine amidotransferase class-I M634_00475 PF00579 tRNA synthetases class I (W and Y) M634_00480 PF13419 Haloacid dehalogenase-like hydrolase M634_00485 PF00588 SpoU rRNA Methylase family M634_00485 PF08032 RNA 2'-O ribose methyltransferase substrate binding M634_00490 PF17876 Cold shock domain M634_00490 PF08461 Ribonuclease R winged-helix domain M634_00490 PF08206 Ribonuclease B OB domain M634_00490 PF00773 RNB domain M634_00490 PF00575 S1 RNA binding domain M634_00495 PF02082 Transcriptional regulator M634_00500 PF00970 Oxidoreductase FAD-binding domain M634_00500 PF00175 Oxidoreductase NAD-binding domain M634_00500 PF00042 Globin M634_00505 PF08238 Sel1 repeat M634_00510 PF00709 Adenylosuccinate synthetase M634_00515 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) M634_00520 PF01145 SPFH domain / Band 7 family M634_00525 PF12221 Bacterial membrane protein N terminal M634_00525 PF01145 SPFH domain / Band 7 family M634_00530 PF13167 GTP-binding GTPase N-terminal M634_00530 PF16360 GTP-binding GTPase Middle Region M634_00530 PF01926 50S ribosome-binding GTPase M634_00535 PF17209 Hfq protein M634_00545 PF08676 MutL C terminal dimerisation domain M634_00545 PF01119 DNA mismatch repair protein, C-terminal domain M634_00550 PF01520 N-acetylmuramoyl-L-alanine amidase M634_00555 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE M634_00560 PF08331 Domain of unknown function (DUF1730) M634_00630 PF00929 Exonuclease M634_00635 PF03193 RsgA GTPase M634_00640 PF02666 Phosphatidylserine decarboxylase M634_00645 PF00939 Sodium:sulfate symporter transmembrane region M634_00650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M634_00650 PF00672 HAMP domain M634_00660 PF01676 Metalloenzyme superfamily M634_00660 PF06415 BPG-independent PGAM N-terminus (iPGM_N) M634_00670 PF00581 Rhodanese-like domain M634_00675 PF02556 Preprotein translocase subunit SecB M634_00680 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus M634_00680 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus M634_00685 PF00132 Bacterial transferase hexapeptide (six repeats) M634_00685 PF06426 Serine acetyltransferase, N-terminal M634_00690 PF01551 Peptidase family M23 M634_00700 PF00440 Bacterial regulatory proteins, tetR family M634_00700 PF08360 QacR-like protein, C-terminal region M634_00710 PF00152 tRNA synthetases class II (D, K and N) M634_00720 PF02910 Fumarate reductase flavoprotein C-term M634_00720 PF00890 FAD binding domain M634_00725 PF13085 2Fe-2S iron-sulfur cluster binding domain M634_00725 PF13183 4Fe-4S dicluster domain M634_00730 PF02300 Fumarate reductase subunit C M634_00735 PF02313 Fumarate reductase subunit D M634_00745 PF08207 Elongation factor P (EF-P) KOW-like domain M634_00745 PF09285 Elongation factor P, C-terminal M634_00745 PF01132 Elongation factor P (EF-P) OB domain M634_00750 PF04055 Radical SAM superfamily M634_00755 PF00842 Alanine racemase, C-terminal domain M634_00755 PF01168 Alanine racemase, N-terminal domain M634_00765 PF02308 MgtC family M634_00775 PF00118 TCP-1/cpn60 chaperonin family M634_00780 PF00166 Chaperonin 10 Kd subunit M634_00785 PF01554 MatE M634_00790 PF00365 Phosphofructokinase M634_00795 PF16916 Dimerisation domain of Zinc Transporter M634_00795 PF01545 Cation efflux family M634_00800 PF07813 LTXXQ motif family protein M634_00805 PF00072 Response regulator receiver domain M634_00805 PF00486 Transcriptional regulatory protein, C terminal M634_00810 PF00512 His Kinase A (phospho-acceptor) domain M634_00810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_00810 PF16527 Two-component sensor protein CpxA, periplasmic domain M634_00810 PF00672 HAMP domain M634_00815 PF02777 Iron/manganese superoxide dismutases, C-terminal domain M634_00815 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain M634_00820 PF00588 SpoU rRNA Methylase family M634_00825 PF04186 FxsA cytoplasmic membrane protein M634_00830 PF10415 Fumarase C C-terminus M634_00830 PF00206 Lyase M634_00835 PF03605 Anaerobic c4-dicarboxylate membrane transporter M634_00840 PF11412 Disulphide bond corrector protein DsbC M634_00840 PF02683 Cytochrome C biogenesis protein transmembrane region M634_00845 PF00072 Response regulator receiver domain M634_00845 PF00196 Bacterial regulatory proteins, luxR family M634_00850 PF02080 TrkA-C domain M634_00850 PF00999 Sodium/hydrogen exchanger family M634_00850 PF03471 Transporter associated domain M634_00860 PF00474 Sodium:solute symporter family M634_00875 PF10415 Fumarase C C-terminus M634_00875 PF00206 Lyase M634_00880 PF00512 His Kinase A (phospho-acceptor) domain M634_00880 PF09308 LuxQ, periplasmic M634_00880 PF00072 Response regulator receiver domain M634_00880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_00885 PF12832 MFS_1 like family M634_00900 PF13193 AMP-binding enzyme C-terminal domain M634_00900 PF00501 AMP-binding enzyme M634_00900 PF16177 Acetyl-coenzyme A synthetase N-terminus M634_00905 PF01220 Dehydroquinase class II M634_00910 PF00364 Biotin-requiring enzyme M634_00915 PF02785 Biotin carboxylase C-terminal domain M634_00915 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M634_00915 PF00289 Biotin carboxylase, N-terminal domain M634_00925 PF01207 Dihydrouridine synthase (Dus) M634_00930 PF02954 Bacterial regulatory protein, Fis family M634_00935 PF07690 Major Facilitator Superfamily M634_00940 PF12848 ABC transporter M634_00940 PF00005 ABC transporter M634_00945 PF05230 MASE2 domain M634_00945 PF00990 Diguanylate cyclase, GGDEF domain M634_00980 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain M634_00980 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain M634_00980 PF01276 Orn/Lys/Arg decarboxylase, major domain M634_00985 PF13520 Amino acid permease M634_00990 PF18500 CadC C-terminal domain 1 M634_00990 PF00486 Transcriptional regulatory protein, C terminal M634_01000 PF13411 MerR HTH family regulatory protein M634_01010 PF02142 MGS-like domain M634_01010 PF01808 AICARFT/IMPCHase bienzyme M634_01015 PF02843 Phosphoribosylglycinamide synthetase, C domain M634_01015 PF02844 Phosphoribosylglycinamide synthetase, N domain M634_01015 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain M634_01025 PF00216 Bacterial DNA-binding protein M634_01030 PF01595 Cyclin M transmembrane N-terminal domain M634_01030 PF00571 CBS domain M634_01035 PF13276 HTH-like domain M634_01035 PF00665 Integrase core domain M634_01035 PF13333 Integrase core domain M634_01045 PF04222 Protein of unknown function (DUF416) M634_01050 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M634_01055 PF03167 Uracil DNA glycosylase superfamily M634_01060 PF01208 Uroporphyrinogen decarboxylase (URO-D) M634_01075 PF00293 NUDIX domain M634_01075 PF09297 NADH pyrophosphatase zinc ribbon domain M634_01080 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ M634_01085 PF04983 RNA polymerase Rpb1, domain 3 M634_01085 PF05000 RNA polymerase Rpb1, domain 4 M634_01085 PF00623 RNA polymerase Rpb1, domain 2 M634_01085 PF04997 RNA polymerase Rpb1, domain 1 M634_01085 PF04998 RNA polymerase Rpb1, domain 5 M634_01090 PF04561 RNA polymerase Rpb2, domain 2 M634_01090 PF00562 RNA polymerase Rpb2, domain 6 M634_01090 PF04560 RNA polymerase Rpb2, domain 7 M634_01090 PF04563 RNA polymerase beta subunit M634_01090 PF10385 RNA polymerase beta subunit external 1 domain M634_01090 PF04565 RNA polymerase Rpb2, domain 3 M634_01095 PF00542 Ribosomal protein L7/L12 C-terminal domain M634_01095 PF16320 Ribosomal protein L7/L12 dimerisation domain M634_01100 PF00466 Ribosomal protein L10 M634_01105 PF00687 Ribosomal protein L1p/L10e family M634_01110 PF03946 Ribosomal protein L11, N-terminal domain M634_01110 PF00298 Ribosomal protein L11, RNA binding domain M634_01115 PF00467 KOW motif M634_01115 PF02357 Transcription termination factor nusG M634_01120 PF00584 SecE/Sec61-gamma subunits of protein translocation complex M634_01125 PF03143 Elongation factor Tu C-terminal domain M634_01125 PF03144 Elongation factor Tu domain 2 M634_01125 PF00009 Elongation factor Tu GTP binding domain M634_01155 PF00485 Phosphoribulokinase / Uridine kinase family M634_01160 PF03099 Biotin/lipoate A/B protein ligase family M634_01160 PF08279 HTH domain M634_01160 PF02237 Biotin protein ligase C terminal domain M634_01165 PF01565 FAD binding domain M634_01165 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain M634_01175 PF13091 PLD-like domain M634_01205 PF01177 Asp/Glu/Hydantoin racemase M634_01210 PF00593 TonB dependent receptor M634_01210 PF07715 TonB-dependent Receptor Plug Domain M634_01215 PF05958 tRNA (Uracil-5-)-methyltransferase M634_01225 PF13276 HTH-like domain M634_01225 PF00665 Integrase core domain M634_01225 PF13333 Integrase core domain M634_01235 PF00440 Bacterial regulatory proteins, tetR family M634_01240 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M634_01240 PF07992 Pyridine nucleotide-disulphide oxidoreductase M634_01245 PF01554 MatE M634_01250 PF04072 Leucine carboxyl methyltransferase M634_01255 PF01726 LexA DNA binding domain M634_01255 PF00717 Peptidase S24-like M634_01260 PF01553 Acyltransferase M634_01265 PF01040 UbiA prenyltransferase family M634_01270 PF04345 Chorismate lyase M634_01275 PF03748 Flagellar basal body-associated protein FliL M634_01280 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease M634_01280 PF01694 Rhomboid family M634_01285 PF00581 Rhodanese-like domain M634_01290 PF04545 Sigma-70, region 4 M634_01290 PF04542 Sigma-70 region 2 M634_01290 PF00140 Sigma-70 factor, region 1.2 M634_01295 PF18075 FtsX extracellular domain M634_01300 PF00005 ABC transporter M634_01305 PF02881 SRP54-type protein, helical bundle domain M634_01305 PF00448 SRP54-type protein, GTPase domain M634_01320 PF01914 MarC family integral membrane protein M634_01370 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M634_01370 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M634_01375 PF01022 Bacterial regulatory protein, arsR family M634_01380 PF08668 HDOD domain M634_01380 PF00563 EAL domain M634_01385 PF01810 LysE type translocator M634_01390 PF12146 Serine aminopeptidase, S33 M634_01415 PF00990 Diguanylate cyclase, GGDEF domain M634_01415 PF10442 FIST C domain M634_01415 PF08495 FIST N domain M634_01415 PF00563 EAL domain M634_01420 PF13419 Haloacid dehalogenase-like hydrolase M634_01425 PF00589 Phage integrase family M634_01425 PF02899 Phage integrase, N-terminal SAM-like domain M634_01435 PF01678 Diaminopimelate epimerase M634_01440 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain M634_01440 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain M634_01450 PF01491 Frataxin-like domain M634_01455 PF12633 Adenylate cyclase NT domain M634_01455 PF01295 Adenylate cyclase, class-I M634_01460 PF03900 Porphobilinogen deaminase, C-terminal domain M634_01460 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain M634_01465 PF02602 Uroporphyrinogen-III synthase HemD M634_01470 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase M634_01475 PF07219 HemY protein N-terminus M634_01515 PF00175 Oxidoreductase NAD-binding domain M634_01520 PF00111 2Fe-2S iron-sulfur cluster binding domain M634_01525 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase M634_01535 PF07497 Rho termination factor, RNA-binding domain M634_01535 PF07498 Rho termination factor, N-terminal domain M634_01535 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M634_01540 PF00085 Thioredoxin M634_01545 PF00270 DEAD/DEAH box helicase M634_01545 PF00271 Helicase conserved C-terminal domain M634_01550 PF02541 Ppx/GppA phosphatase family M634_01555 PF02592 Putative vitamin uptake transporter M634_01565 PF00570 HRDC domain M634_01565 PF00270 DEAD/DEAH box helicase M634_01565 PF09382 RQC domain M634_01565 PF16124 RecQ zinc-binding M634_01565 PF00271 Helicase conserved C-terminal domain M634_01570 PF00892 EamA-like transporter family M634_01580 PF01810 LysE type translocator M634_01600 PF13361 UvrD-like helicase C-terminal domain M634_01600 PF00580 UvrD/REP helicase N-terminal domain M634_01610 PF05114 Protein of unknown function (DUF692) M634_01630 PF07690 Major Facilitator Superfamily M634_01635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_01635 PF03466 LysR substrate binding domain M634_01640 PF00557 Metallopeptidase family M24 M634_01640 PF01321 Creatinase/Prolidase N-terminal domain M634_01640 PF00557 Metallopeptidase family M24 M634_01640 PF01321 Creatinase/Prolidase N-terminal domain M634_01645 PF06968 Biotin and Thiamin Synthesis associated domain M634_01645 PF04055 Radical SAM superfamily M634_01650 PF05690 Thiazole biosynthesis protein ThiG M634_01655 PF02597 ThiS family M634_01660 PF00899 ThiF family M634_01665 PF02581 Thiamine monophosphate synthase M634_01670 PF13667 ThiC-associated domain M634_01670 PF01964 Radical SAM ThiC family M634_01675 PF02537 CrcB-like protein, Camphor Resistance (CrcB) M634_01725 PF12724 Flavodoxin domain M634_01730 PF02386 Cation transport protein M634_01735 PF09186 Domain of unknown function (DUF1949) M634_01735 PF01205 Uncharacterized protein family UPF0029 M634_01740 PF00378 Enoyl-CoA hydratase/isomerase M634_01740 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M634_01740 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M634_01745 PF02803 Thiolase, C-terminal domain M634_01745 PF00108 Thiolase, N-terminal domain M634_01750 PF00107 Zinc-binding dehydrogenase M634_01750 PF08240 Alcohol dehydrogenase GroES-like domain M634_01755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_01755 PF03466 LysR substrate binding domain M634_01765 PF01206 Sulfurtransferase TusA M634_01775 PF01169 Uncharacterized protein family UPF0016 M634_01780 PF02091 Glycyl-tRNA synthetase alpha subunit M634_01785 PF02092 Glycyl-tRNA synthetase beta subunit M634_01785 PF05746 DALR anticodon binding domain M634_01790 PF00128 Alpha amylase, catalytic domain M634_01795 PF00155 Aminotransferase class I and II M634_01800 PF00011 Hsp20/alpha crystallin family M634_01815 PF00986 DNA gyrase B subunit, carboxyl terminus M634_01815 PF18053 DNA gyrase B subunit insert domain M634_01815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_01815 PF01751 Toprim domain M634_01815 PF00204 DNA gyrase B M634_01820 PF02463 RecF/RecN/SMC N terminal domain M634_01825 PF02767 DNA polymerase III beta subunit, central domain M634_01825 PF00712 DNA polymerase III beta subunit, N-terminal domain M634_01825 PF02768 DNA polymerase III beta subunit, C-terminal domain M634_01830 PF08299 Bacterial dnaA protein helix-turn-helix M634_01830 PF00308 Bacterial dnaA protein M634_01830 PF11638 DnaA N-terminal domain M634_01835 PF00497 Bacterial extracellular solute-binding proteins, family 3 M634_01840 PF00528 Binding-protein-dependent transport system inner membrane component M634_01845 PF00005 ABC transporter M634_01850 PF00468 Ribosomal protein L34 M634_01855 PF00825 Ribonuclease P M634_01860 PF02096 60Kd inner membrane protein M634_01860 PF14849 YidC periplasmic domain M634_01865 PF12631 MnmE helical domain M634_01865 PF10396 GTP-binding protein TrmE N-terminus M634_01865 PF01926 50S ribosome-binding GTPase M634_01870 PF00258 Flavodoxin M634_01875 PF13932 GidA associated domain M634_01875 PF01134 Glucose inhibited division protein A M634_01880 PF02527 rRNA small subunit methyltransferase G M634_01885 PF13614 AAA domain M634_01890 PF17762 HTH domain found in ParB protein M634_01890 PF02195 ParB-like nuclease domain M634_01895 PF03899 ATP synthase I chain M634_01900 PF00119 ATP synthase A chain M634_01905 PF00137 ATP synthase subunit C M634_01910 PF00430 ATP synthase B/B' CF(0) M634_01915 PF00213 ATP synthase delta (OSCP) subunit M634_01920 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M634_01920 PF02874 ATP synthase alpha/beta family, beta-barrel domain M634_01920 PF00306 ATP synthase alpha/beta chain, C terminal domain M634_01925 PF00231 ATP synthase M634_01930 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M634_01930 PF02874 ATP synthase alpha/beta family, beta-barrel domain M634_01935 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain M634_01935 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain M634_01940 PF12804 MobA-like NTP transferase domain M634_01940 PF00132 Bacterial transferase hexapeptide (six repeats) M634_01945 PF00528 Binding-protein-dependent transport system inner membrane component M634_01950 PF00497 Bacterial extracellular solute-binding proteins, family 3 M634_01955 PF07690 Major Facilitator Superfamily M634_01960 PF03466 LysR substrate binding domain M634_01960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_01965 PF00585 C-terminal regulatory domain of Threonine dehydratase M634_01965 PF00291 Pyridoxal-phosphate dependent enzyme M634_01970 PF00920 Dehydratase family M634_01975 PF01063 Amino-transferase class IV M634_01985 PF00205 Thiamine pyrophosphate enzyme, central domain M634_01985 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M634_01985 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M634_01990 PF01078 Magnesium chelatase, subunit ChlI M634_01990 PF13335 Magnesium chelatase, subunit ChlI C-terminal M634_02000 PF01553 Acyltransferase M634_02005 PF01323 DSBA-like thioredoxin domain M634_02010 PF01636 Phosphotransferase enzyme family M634_02015 PF13746 4Fe-4S dicluster domain M634_02015 PF12801 4Fe-4S binding domain M634_02015 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase M634_02020 PF06288 Protein of unknown function (DUF1040) M634_02035 PF07070 SpoOM protein M634_02040 PF03006 Haemolysin-III related M634_02050 PF02386 Cation transport protein M634_02055 PF02254 TrkA-N domain M634_02055 PF02080 TrkA-C domain M634_02060 PF01189 16S rRNA methyltransferase RsmB/F M634_02060 PF01029 NusB family M634_02065 PF02911 Formyl transferase, C-terminal domain M634_02065 PF00551 Formyl transferase M634_02070 PF01327 Polypeptide deformylase M634_02080 PF02481 DNA recombination-mediator protein A M634_02080 PF17782 DprA winged helix domain M634_02085 PF04361 Protein of unknown function (DUF494) M634_02090 PF01396 Topoisomerase DNA binding C4 zinc finger M634_02095 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain M634_02095 PF02222 ATP-grasp domain M634_02100 PF00731 AIR carboxylase M634_02105 PF01300 Telomere recombination M634_02110 PF01218 Coproporphyrinogen III oxidase M634_02115 PF08501 Shikimate dehydrogenase substrate binding domain M634_02115 PF18317 Shikimate 5'-dehydrogenase C-terminal domain M634_02115 PF01488 Shikimate / quinate 5-dehydrogenase M634_02120 PF07369 Protein of unknown function (DUF1488) M634_02125 PF00132 Bacterial transferase hexapeptide (six repeats) M634_02165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_02165 PF03466 LysR substrate binding domain M634_02170 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain M634_02170 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain M634_02175 PF04380 Membrane fusogenic activity M634_02180 PF00873 AcrB/AcrD/AcrF family M634_02185 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M634_02190 PF16295 Tetracyclin repressor-like, C-terminal domain M634_02190 PF00440 Bacterial regulatory proteins, tetR family M634_02195 PF00580 UvrD/REP helicase N-terminal domain M634_02195 PF13361 UvrD-like helicase C-terminal domain M634_02200 PF13442 Cytochrome C oxidase, cbb3-type, subunit III M634_02230 PF13419 Haloacid dehalogenase-like hydrolase M634_02245 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M634_02245 PF00005 ABC transporter M634_02250 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M634_02260 PF00528 Binding-protein-dependent transport system inner membrane component M634_02260 PF12911 N-terminal TM domain of oligopeptide transport permease C M634_02290 PF00069 Protein kinase domain M634_02295 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M634_02295 PF00356 Bacterial regulatory proteins, lacI family M634_02300 PF03466 LysR substrate binding domain M634_02300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_02305 PF00893 Small Multidrug Resistance protein M634_02310 PF00893 Small Multidrug Resistance protein M634_02315 PF00920 Dehydratase family M634_02320 PF01202 Shikimate kinase M634_02325 PF02447 GntP family permease M634_02330 PF01081 KDPG and KHG aldolase M634_02335 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M634_02340 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M634_02340 PF07992 Pyridine nucleotide-disulphide oxidoreductase M634_02345 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ M634_02350 PF01432 Peptidase family M3 M634_02355 PF01037 Lrp/AsnC ligand binding domain M634_02360 PF00563 EAL domain M634_02360 PF00990 Diguanylate cyclase, GGDEF domain M634_02360 PF08448 PAS fold M634_02365 PF04445 Putative SAM-dependent methyltransferase M634_02375 PF00892 EamA-like transporter family M634_02380 PF00582 Universal stress protein family M634_02385 PF00210 Ferritin-like domain M634_02390 PF10625 Universal stress protein B (UspB) M634_02400 PF00158 Sigma-54 interaction domain M634_02400 PF02954 Bacterial regulatory protein, Fis family M634_02400 PF01590 GAF domain M634_02405 PF04972 BON domain M634_02455 PF01594 AI-2E family transporter M634_02460 PF00563 EAL domain M634_02460 PF00990 Diguanylate cyclase, GGDEF domain M634_02460 PF03707 Bacterial signalling protein N terminal repeat M634_02475 PF02646 RmuC family M634_02480 PF01209 ubiE/COQ5 methyltransferase family M634_02485 PF02036 SCP-2 sterol transfer family M634_02490 PF03109 ABC1 family M634_02495 PF02416 mttA/Hcf106 family M634_02500 PF02416 mttA/Hcf106 family M634_02505 PF00902 Sec-independent protein translocase protein (TatC) M634_02515 PF01026 TatD related DNase M634_02520 PF00490 Delta-aminolevulinic acid dehydratase M634_02535 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M634_02535 PF01367 5'-3' exonuclease, C-terminal SAM fold M634_02535 PF01612 3'-5' exonuclease M634_02535 PF00476 DNA polymerase family A M634_02540 PF01926 50S ribosome-binding GTPase M634_02545 PF00034 Cytochrome c M634_02560 PF04220 Der GTPase activator (YihI) M634_02565 PF10675 Protein of unknown function (DUF2489) M634_02570 PF04055 Radical SAM superfamily M634_02570 PF06969 HemN C-terminal domain M634_02575 PF00962 Adenosine/AMP deaminase M634_02580 PF00563 EAL domain M634_02580 PF03707 Bacterial signalling protein N terminal repeat M634_02580 PF00990 Diguanylate cyclase, GGDEF domain M634_02585 PF00158 Sigma-54 interaction domain M634_02585 PF02954 Bacterial regulatory protein, Fis family M634_02585 PF00072 Response regulator receiver domain M634_02590 PF00512 His Kinase A (phospho-acceptor) domain M634_02590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_02590 PF00989 PAS fold M634_02605 PF03951 Glutamine synthetase, beta-Grasp domain M634_02605 PF00120 Glutamine synthetase, catalytic domain M634_02625 PF03631 Virulence factor BrkB M634_02630 PF02580 D-Tyr-tRNA(Tyr) deacylase M634_02635 PF09500 Putative thioesterase (yiiD_Cterm) M634_02635 PF00583 Acetyltransferase (GNAT) family M634_02645 PF01293 Phosphoenolpyruvate carboxykinase M634_02650 PF01430 Hsp33 protein M634_02655 PF01479 S4 domain M634_02660 PF11356 Type II secretion system protein C M634_02665 PF03958 Bacterial type II/III secretion system short domain M634_02665 PF00263 Bacterial type II and III secretion system protein M634_02670 PF00437 Type II/IV secretion system protein M634_02675 PF00482 Type II secretion system (T2SS), protein F M634_02680 PF08334 Type II secretion system (T2SS), protein G M634_02680 PF07963 Prokaryotic N-terminal methylation motif M634_02685 PF12019 Type II transport protein GspH M634_02690 PF07963 Prokaryotic N-terminal methylation motif M634_02690 PF02501 Type II secretion system (T2SS), protein I M634_02695 PF11612 Type II secretion system (T2SS), protein J M634_02695 PF07963 Prokaryotic N-terminal methylation motif M634_02700 PF03934 Type II secretion system (T2SS), protein K M634_02705 PF12693 GspL periplasmic domain M634_02705 PF05134 Type II secretion system (T2SS), protein L M634_02710 PF04612 Type II secretion system (T2SS), protein M M634_02715 PF01203 Type II secretion system (T2SS), protein N M634_02720 PF00459 Inositol monophosphatase family M634_02725 PF00293 NUDIX domain M634_02730 PF01521 Iron-sulphur cluster biosynthesis M634_02730 PF01106 NifU-like domain M634_02735 PF00156 Phosphoribosyl transferase domain M634_02740 PF00561 alpha/beta hydrolase fold M634_02750 PF00575 S1 RNA binding domain M634_02750 PF17674 HHH domain M634_02750 PF09371 Tex-like protein N-terminal domain M634_02750 PF16921 Tex protein YqgF-like domain M634_02760 PF01272 Transcription elongation factor, GreA/GreB, C-term M634_02760 PF03449 Transcription elongation factor, N-terminal M634_02770 PF00486 Transcriptional regulatory protein, C terminal M634_02770 PF00072 Response regulator receiver domain M634_02775 PF00512 His Kinase A (phospho-acceptor) domain M634_02775 PF00672 HAMP domain M634_02775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_02780 PF00860 Permease family M634_02790 PF17191 RecG wedge domain M634_02790 PF00271 Helicase conserved C-terminal domain M634_02790 PF00270 DEAD/DEAH box helicase M634_02795 PF12105 SpoU, rRNA methylase, C-terminal M634_02795 PF00588 SpoU rRNA Methylase family M634_02800 PF02824 TGS domain M634_02800 PF04607 Region found in RelA / SpoT proteins M634_02800 PF13291 ACT domain M634_02805 PF01192 RNA polymerase Rpb6 M634_02810 PF00625 Guanylate kinase M634_02830 PF02472 Biopolymer transport protein ExbD/TolR M634_02835 PF01618 MotA/TolQ/ExbB proton channel family M634_02850 PF00593 TonB dependent receptor M634_02850 PF07715 TonB-dependent Receptor Plug Domain M634_02855 PF00528 Binding-protein-dependent transport system inner membrane component M634_02860 PF12911 N-terminal TM domain of oligopeptide transport permease C M634_02860 PF00528 Binding-protein-dependent transport system inner membrane component M634_02865 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M634_02880 PF01527 Transposase M634_02885 PF13333 Integrase core domain M634_02885 PF00665 Integrase core domain M634_02885 PF13276 HTH-like domain M634_02895 PF04138 GtrA-like protein M634_02900 PF00535 Glycosyl transferase family 2 M634_02905 PF08340 Domain of unknown function (DUF1732) M634_02905 PF03755 YicC-like family, N-terminal region M634_02910 PF03725 3' exoribonuclease family, domain 2 M634_02910 PF01138 3' exoribonuclease family, domain 1 M634_02915 PF00156 Phosphoribosyl transferase domain M634_02920 PF03279 Bacterial lipid A biosynthesis acyltransferase M634_02925 PF00440 Bacterial regulatory proteins, tetR family M634_02930 PF04127 DNA / pantothenate metabolism flavoprotein M634_02930 PF02441 Flavoprotein M634_02935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M634_02935 PF00672 HAMP domain M634_02935 PF17200 Single Cache domain 2 M634_02940 PF04002 RadC-like JAB domain M634_02945 PF00830 Ribosomal L28 family M634_02950 PF00471 Ribosomal protein L33 M634_02960 PF06827 Zinc finger found in FPG and IleRS M634_02960 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain M634_02960 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain M634_02965 PF01467 Cytidylyltransferase-like M634_02970 PF05686 Glycosyl transferase family 90 M634_02975 PF00535 Glycosyl transferase family 2 M634_02980 PF00535 Glycosyl transferase family 2 M634_02985 PF01075 Glycosyltransferase family 9 (heptosyltransferase) M634_02990 PF01219 Prokaryotic diacylglycerol kinase M634_03000 PF16363 GDP-mannose 4,6 dehydratase M634_03005 PF00483 Nucleotidyl transferase M634_03010 PF05523 WxcM-like, C-terminal M634_03015 PF00132 Bacterial transferase hexapeptide (six repeats) M634_03015 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 M634_03020 PF01575 MaoC like domain M634_03025 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family M634_03040 PF00534 Glycosyl transferases group 1 M634_03040 PF13439 Glycosyltransferase Family 4 M634_03050 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) M634_03055 PF01075 Glycosyltransferase family 9 (heptosyltransferase) M634_03060 PF03279 Bacterial lipid A biosynthesis acyltransferase M634_03065 PF01370 NAD dependent epimerase/dehydratase family M634_03070 PF06082 Exopolysaccharide biosynthesis protein YbjH M634_03130 PF00664 ABC transporter transmembrane region M634_03130 PF00005 ABC transporter M634_03145 PF00535 Glycosyl transferase family 2 M634_03145 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 M634_03155 PF02397 Bacterial sugar transferase M634_03160 PF14602 Hexapeptide repeat of succinyl-transferase M634_03160 PF00132 Bacterial transferase hexapeptide (six repeats) M634_03160 PF17836 PglD N-terminal domain M634_03165 PF01575 MaoC like domain M634_03170 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family M634_03175 PF02719 Polysaccharide biosynthesis protein M634_03180 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M634_03180 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M634_03180 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M634_03185 PF00483 Nucleotidyl transferase M634_03190 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain M634_03190 PF00753 Metallo-beta-lactamase superfamily M634_03190 PF10996 Beta-Casp domain M634_03195 PF00121 Triosephosphate isomerase M634_03215 PF00455 DeoR C terminal sensor domain M634_03215 PF08220 DeoR-like helix-turn-helix domain M634_03220 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded M634_03225 PF06005 Cell division protein ZapB M634_03230 PF03737 Aldolase/RraA M634_03235 PF01040 UbiA prenyltransferase family M634_03240 PF00004 ATPase family associated with various cellular activities (AAA) M634_03240 PF07724 AAA domain (Cdc48 subfamily) M634_03245 PF00227 Proteasome subunit M634_03260 PF00356 Bacterial regulatory proteins, lacI family M634_03265 PF00270 DEAD/DEAH box helicase M634_03265 PF18074 Primosomal protein N C-terminal domain M634_03265 PF18319 PriA DNA helicase Cys-rich region (CRR) domain M634_03265 PF00271 Helicase conserved C-terminal domain M634_03265 PF17764 3′ DNA-binding domain (3′BD) M634_03270 PF01197 Ribosomal protein L31 M634_03275 PF00338 Ribosomal protein S10p/S20e M634_03280 PF00297 Ribosomal protein L3 M634_03285 PF00573 Ribosomal protein L4/L1 family M634_03290 PF00276 Ribosomal protein L23 M634_03295 PF00181 Ribosomal Proteins L2, RNA binding domain M634_03295 PF03947 Ribosomal Proteins L2, C-terminal domain M634_03300 PF00203 Ribosomal protein S19 M634_03305 PF00237 Ribosomal protein L22p/L17e M634_03310 PF00189 Ribosomal protein S3, C-terminal domain M634_03310 PF07650 KH domain M634_03315 PF00252 Ribosomal protein L16p/L10e M634_03320 PF00831 Ribosomal L29 protein M634_03325 PF00366 Ribosomal protein S17 M634_03330 PF00238 Ribosomal protein L14p/L23e M634_03335 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 M634_03335 PF00467 KOW motif M634_03340 PF00281 Ribosomal protein L5 M634_03340 PF00673 ribosomal L5P family C-terminus M634_03345 PF00253 Ribosomal protein S14p/S29e M634_03350 PF00410 Ribosomal protein S8 M634_03355 PF00347 Ribosomal protein L6 M634_03360 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast M634_03365 PF00333 Ribosomal protein S5, N-terminal domain M634_03365 PF03719 Ribosomal protein S5, C-terminal domain M634_03370 PF00327 Ribosomal protein L30p/L7e M634_03375 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A M634_03380 PF00344 SecY translocase M634_03385 PF00444 Ribosomal protein L36 M634_03390 PF00416 Ribosomal protein S13/S18 M634_03395 PF00411 Ribosomal protein S11 M634_03400 PF00163 Ribosomal protein S4/S9 N-terminal domain M634_03400 PF01479 S4 domain M634_03405 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain M634_03405 PF01000 RNA polymerase Rpb3/RpoA insert domain M634_03405 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain M634_03410 PF01196 Ribosomal protein L17 M634_03420 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M634_03420 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M634_03430 PF13673 Acetyltransferase (GNAT) domain M634_03435 PF03880 DbpA RNA binding domain M634_03435 PF00271 Helicase conserved C-terminal domain M634_03435 PF00270 DEAD/DEAH box helicase M634_03445 PF02872 5'-nucleotidase, C-terminal domain M634_03445 PF00149 Calcineurin-like phosphoesterase M634_03450 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M634_03450 PF14824 Sirohaem biosynthesis protein central M634_03450 PF10414 Sirohaem synthase dimerisation region M634_03455 PF01507 Phosphoadenosine phosphosulfate reductase family M634_03460 PF00009 Elongation factor Tu GTP binding domain M634_03465 PF02080 TrkA-C domain M634_03465 PF03600 Citrate transporter M634_03495 PF00005 ABC transporter M634_03510 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) M634_03515 PF06526 Protein of unknown function (DUF1107) M634_03520 PF01625 Peptide methionine sulfoxide reductase M634_03525 PF17243 POTRA domain TamA domain 1 M634_03525 PF01103 Surface antigen M634_03530 PF04357 TamB, inner membrane protein subunit of TAM complex M634_03535 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like M634_03545 PF00719 Inorganic pyrophosphatase M634_03550 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain M634_03555 PF02875 Mur ligase family, glutamate ligase domain M634_03555 PF08245 Mur ligase middle domain M634_03555 PF01225 Mur ligase family, catalytic domain M634_03560 PF02441 Flavoprotein M634_03570 PF00528 Binding-protein-dependent transport system inner membrane component M634_03575 PF00005 ABC transporter M634_03595 PF16868 NMT1-like family M634_03600 PF01316 Arginine repressor, DNA binding domain M634_03600 PF02863 Arginine repressor, C-terminal domain M634_03605 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain M634_03605 PF00056 lactate/malate dehydrogenase, NAD binding domain M634_03615 PF00348 Polyprenyl synthetase M634_03620 PF00829 Ribosomal prokaryotic L21 protein M634_03625 PF01016 Ribosomal L27 protein M634_03630 PF01926 50S ribosome-binding GTPase M634_03630 PF01018 GTP1/OBG M634_03635 PF06738 Putative threonine/serine exporter M634_03640 PF12821 Threonine/Serine exporter, ThrE M634_03645 PF00186 Dihydrofolate reductase M634_03650 PF00149 Calcineurin-like phosphoesterase M634_03655 PF04379 ApaG domain M634_03660 PF00398 Ribosomal RNA adenine dimethylase M634_03665 PF04166 Pyridoxal phosphate biosynthetic protein PdxA M634_03670 PF09312 SurA N-terminal domain M634_03675 PF04453 LPS transport system D M634_03675 PF03968 OstA-like protein M634_03680 PF05099 Tellurite resistance protein TerB M634_03680 PF00226 DnaJ domain M634_03690 PF00694 Aconitase C-terminal domain M634_03695 PF00330 Aconitase family (aconitate hydratase) M634_03700 PF00180 Isocitrate/isopropylmalate dehydrogenase M634_03705 PF00682 HMGL-like M634_03705 PF08502 LeuA allosteric (dimerisation) domain M634_03715 PF01569 PAP2 superfamily M634_03725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_03725 PF03466 LysR substrate binding domain M634_03730 PF00501 AMP-binding enzyme M634_03735 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M634_03735 PF00205 Thiamine pyrophosphate enzyme, central domain M634_03735 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M634_03740 PF10369 Small subunit of acetolactate synthase M634_03745 PF00990 Diguanylate cyclase, GGDEF domain M634_03745 PF07694 5TMR of 5TMR-LYT M634_03755 PF02887 Pyruvate kinase, alpha/beta domain M634_03755 PF00224 Pyruvate kinase, barrel domain M634_03760 PF08220 DeoR-like helix-turn-helix domain M634_03760 PF00455 DeoR C terminal sensor domain M634_03765 PF01380 SIS domain M634_03775 PF00486 Transcriptional regulatory protein, C terminal M634_03775 PF00072 Response regulator receiver domain M634_03780 PF00512 His Kinase A (phospho-acceptor) domain M634_03780 PF00672 HAMP domain M634_03780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_03785 PF00465 Iron-containing alcohol dehydrogenase M634_03790 PF02733 Dak1 domain M634_03795 PF02734 DAK2 domain M634_03800 PF05524 PEP-utilising enzyme, N-terminal M634_03800 PF00391 PEP-utilising enzyme, mobile domain M634_03800 PF02896 PEP-utilising enzyme, TIM barrel domain M634_03805 PF02954 Bacterial regulatory protein, Fis family M634_03805 PF00158 Sigma-54 interaction domain M634_03805 PF00989 PAS fold M634_03810 PF05068 Mannitol repressor M634_03815 PF08125 Mannitol dehydrogenase C-terminal domain M634_03815 PF01232 Mannitol dehydrogenase Rossmann domain M634_03820 PF02378 Phosphotransferase system, EIIC M634_03820 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M634_03820 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M634_03855 PF03180 NLPA lipoprotein M634_03865 PF00589 Phage integrase family M634_03865 PF14659 Phage integrase, N-terminal SAM-like domain M634_03865 PF13356 Arm DNA-binding domain M634_03900 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M634_03935 PF04546 Sigma-70, non-essential region M634_03935 PF04545 Sigma-70, region 4 M634_03935 PF04539 Sigma-70 region 3 M634_03935 PF04542 Sigma-70 region 2 M634_03935 PF00140 Sigma-70 factor, region 1.2 M634_03935 PF03979 Sigma-70 factor, region 1.1 M634_03940 PF08275 DNA primase catalytic core, N-terminal domain M634_03940 PF08278 DNA primase DnaG DnaB-binding M634_03940 PF10410 DnaB-helicase binding domain of primase M634_03940 PF01807 CHC2 zinc finger M634_03945 PF09424 Yqey-like protein M634_03950 PF01165 Ribosomal protein S21 M634_03955 PF00814 Glycoprotease family M634_03960 PF12697 Alpha/beta hydrolase family M634_03965 PF02660 Glycerol-3-phosphate acyltransferase M634_03970 PF02152 Dihydroneopterin aldolase M634_03975 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) M634_03980 PF02673 Bacitracin resistance protein BacA M634_03985 PF12627 Probable RNA and SrmB- binding site of polymerase A M634_03985 PF01966 HD domain M634_03985 PF01743 Poly A polymerase head domain M634_03990 PF01471 Putative peptidoglycan binding domain M634_03990 PF13401 AAA domain M634_04000 PF08239 Bacterial SH3 domain M634_04005 PF01384 Phosphate transporter family M634_04010 PF01865 Protein of unknown function DUF47 M634_04015 PF01928 CYTH domain M634_04025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M634_04025 PF00672 HAMP domain M634_04030 PF03710 Glutamate-ammonia ligase adenylyltransferase M634_04030 PF08335 GlnD PII-uridylyltransferase M634_04035 PF01467 Cytidylyltransferase-like M634_04035 PF00294 pfkB family carbohydrate kinase M634_04040 PF02321 Outer membrane efflux protein M634_04045 PF00293 NUDIX domain M634_04050 PF06853 Protein of unknown function (DUF1249) M634_04055 PF00149 Calcineurin-like phosphoesterase M634_04060 PF05728 Uncharacterised protein family (UPF0227) M634_04065 PF01751 Toprim domain M634_04065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_04065 PF00986 DNA gyrase B subunit, carboxyl terminus M634_04065 PF00204 DNA gyrase B M634_04070 PF03989 DNA gyrase C-terminal domain, beta-propeller M634_04070 PF00521 DNA gyrase/topoisomerase IV, subunit A M634_04075 PF13180 PDZ domain M634_04080 PF00595 PDZ domain M634_04085 PF06295 Protein of unknown function (DUF1043) M634_04090 PF03969 AFG1-like ATPase M634_04095 PF00572 Ribosomal protein L13 M634_04100 PF00380 Ribosomal protein S9/S16 M634_04105 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal M634_04105 PF00355 Rieske [2Fe-2S] domain M634_04110 PF00033 Cytochrome b/b6/petB M634_04110 PF00032 Cytochrome b(C-terminal)/b6/petD M634_04115 PF02167 Cytochrome C1 family M634_04120 PF00043 Glutathione S-transferase, C-terminal domain M634_04120 PF02798 Glutathione S-transferase, N-terminal domain M634_04125 PF04386 Stringent starvation protein B M634_04130 PF04972 BON domain M634_04135 PF13580 SIS domain M634_04140 PF02021 Uncharacterised protein family UPF0102 M634_04145 PF04348 LppC putative lipoprotein M634_04150 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M634_04155 PF01795 MraW methylase family M634_04160 PF04999 Cell division protein FtsL M634_04165 PF00905 Penicillin binding protein transpeptidase domain M634_04165 PF03717 Penicillin-binding Protein dimerisation domain M634_04170 PF02875 Mur ligase family, glutamate ligase domain M634_04170 PF08245 Mur ligase middle domain M634_04170 PF01225 Mur ligase family, catalytic domain M634_04175 PF02875 Mur ligase family, glutamate ligase domain M634_04175 PF08245 Mur ligase middle domain M634_04175 PF01225 Mur ligase family, catalytic domain M634_04180 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 M634_04180 PF00953 Glycosyl transferase family 4 M634_04185 PF02875 Mur ligase family, glutamate ligase domain M634_04185 PF08245 Mur ligase middle domain M634_04190 PF01098 Cell cycle protein M634_04195 PF04101 Glycosyltransferase family 28 C-terminal domain M634_04195 PF03033 Glycosyltransferase family 28 N-terminal domain M634_04200 PF01225 Mur ligase family, catalytic domain M634_04200 PF02875 Mur ligase family, glutamate ligase domain M634_04200 PF08245 Mur ligase middle domain M634_04205 PF03799 Cell division protein FtsQ M634_04205 PF08478 POTRA domain, FtsQ-type M634_04210 PF02491 SHS2 domain inserted in FTSA M634_04215 PF00091 Tubulin/FtsZ family, GTPase domain M634_04215 PF12327 FtsZ family, C-terminal domain M634_04220 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase M634_04230 PF07516 SecA Wing and Scaffold domain M634_04230 PF01043 SecA preprotein cross-linking domain M634_04230 PF07517 SecA DEAD-like domain M634_04230 PF02810 SEC-C motif M634_04235 PF00293 NUDIX domain M634_04240 PF05173 Dihydrodipicolinate reductase, C-terminus M634_04240 PF01113 Dihydrodipicolinate reductase, N-terminus M634_04245 PF00117 Glutamine amidotransferase class-I M634_04245 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain M634_04250 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M634_04250 PF02142 MGS-like domain M634_04250 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain M634_04265 PF01925 Sulfite exporter TauE/SafE M634_04270 PF03466 LysR substrate binding domain M634_04270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_04275 PF03458 UPF0126 domain M634_04280 PF01497 Periplasmic binding protein M634_04285 PF03186 CobD/Cbib protein M634_04285 PF17113 Regulatory signalling modulator protein AmpE M634_04290 PF01048 Phosphorylase superfamily M634_04300 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster M634_04300 PF07992 Pyridine nucleotide-disulphide oxidoreductase M634_04305 PF04898 Glutamate synthase central domain M634_04305 PF00310 Glutamine amidotransferases class-II M634_04305 PF01493 GXGXG motif M634_04305 PF01645 Conserved region in glutamate synthase M634_04310 PF07992 Pyridine nucleotide-disulphide oxidoreductase M634_04310 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster M634_04315 PF00310 Glutamine amidotransferases class-II M634_04315 PF04898 Glutamate synthase central domain M634_04315 PF01645 Conserved region in glutamate synthase M634_04315 PF01493 GXGXG motif M634_04320 PF16199 Radical_SAM C-terminal domain M634_04320 PF04055 Radical SAM superfamily M634_04325 PF01590 GAF domain M634_04325 PF00563 EAL domain M634_04325 PF00990 Diguanylate cyclase, GGDEF domain M634_04325 PF00360 Phytochrome region M634_04330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_04330 PF00512 His Kinase A (phospho-acceptor) domain M634_04330 PF01627 Hpt domain M634_04330 PF00072 Response regulator receiver domain M634_04330 PF00989 PAS fold M634_04330 PF18415 Histidine kinase receptor ArcB trans-membrane domain M634_04340 PF00486 Transcriptional regulatory protein, C terminal M634_04340 PF00072 Response regulator receiver domain M634_04350 PF03737 Aldolase/RraA M634_04360 PF03447 Homoserine dehydrogenase, NAD binding domain M634_04360 PF01842 ACT domain M634_04360 PF13840 ACT domain M634_04360 PF00742 Homoserine dehydrogenase M634_04360 PF00696 Amino acid kinase family M634_04365 PF08544 GHMP kinases C terminal M634_04365 PF00288 GHMP kinases N terminal domain M634_04370 PF14821 Threonine synthase N terminus M634_04370 PF00291 Pyridoxal-phosphate dependent enzyme M634_04375 PF01228 Glycine radical M634_04380 PF01261 Xylose isomerase-like TIM barrel M634_04385 PF03167 Uracil DNA glycosylase superfamily M634_04400 PF01235 Sodium:alanine symporter family M634_04405 PF03883 Peroxide stress protein YaaA M634_04410 PF00271 Helicase conserved C-terminal domain M634_04410 PF00270 DEAD/DEAH box helicase M634_04415 PF05175 Methyltransferase small domain M634_04420 PF05525 Branched-chain amino acid transport protein M634_04425 PF00258 Flavodoxin M634_04430 PF00589 Phage integrase family M634_04430 PF02899 Phage integrase, N-terminal SAM-like domain M634_04435 PF13098 Thioredoxin-like domain M634_04435 PF10411 Disulfide bond isomerase protein N-terminus M634_04440 PF17768 RecJ OB domain M634_04440 PF02272 DHHA1 domain M634_04440 PF01368 DHH family M634_04445 PF03462 PCRF domain M634_04445 PF00472 RF-1 domain M634_04450 PF01336 OB-fold nucleic acid binding domain M634_04450 PF00152 tRNA synthetases class II (D, K and N) M634_04455 PF00072 Response regulator receiver domain M634_04455 PF02954 Bacterial regulatory protein, Fis family M634_04455 PF00158 Sigma-54 interaction domain M634_04470 PF00248 Aldo/keto reductase family M634_04480 PF02976 DNA mismatch repair enzyme MutH M634_04485 PF00293 NUDIX domain M634_04490 PF02896 PEP-utilising enzyme, TIM barrel domain M634_04490 PF05524 PEP-utilising enzyme, N-terminal M634_04490 PF01590 GAF domain M634_04490 PF00391 PEP-utilising enzyme, mobile domain M634_04495 PF01925 Sulfite exporter TauE/SafE M634_04500 PF01790 Prolipoprotein diacylglyceryl transferase M634_04505 PF00303 Thymidylate synthase M634_04515 PF02690 Na+/Pi-cotransporter M634_04520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_04520 PF03466 LysR substrate binding domain M634_04525 PF01022 Bacterial regulatory protein, arsR family M634_04530 PF01649 Ribosomal protein S20 M634_04535 PF03023 Lipid II flippase MurJ M634_04540 PF01687 Riboflavin kinase M634_04540 PF06574 FAD synthetase M634_04545 PF06827 Zinc finger found in FPG and IleRS M634_04545 PF08264 Anticodon-binding domain of tRNA M634_04545 PF00133 tRNA synthetases class I (I, L, M and V) M634_04550 PF01252 Signal peptidase (SPase) II M634_04555 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M634_04560 PF02401 LytB protein M634_04565 PF00072 Response regulator receiver domain M634_04565 PF04397 LytTr DNA-binding domain M634_04570 PF06580 Histidine kinase M634_04570 PF07694 5TMR of 5TMR-LYT M634_04575 PF02554 Carbon starvation protein CstA M634_04590 PF13580 SIS domain M634_04595 PF03702 Anhydro-N-acetylmuramic acid kinase M634_04600 PF00933 Glycosyl hydrolase family 3 N terminal domain M634_04605 PF00793 DAHP synthetase I family M634_04610 PF01817 Chorismate mutase type II M634_04610 PF02153 Prephenate dehydrogenase M634_04615 PF01551 Peptidase family M23 M634_04615 PF04225 Opacity-associated protein A LysM-like domain M634_04620 PF07238 PilZ domain M634_04630 PF00005 ABC transporter M634_04630 PF12848 ABC transporter M634_04635 PF14718 Soluble lytic murein transglycosylase L domain M634_04635 PF01464 Transglycosylase SLT domain M634_04640 PF01371 Trp repressor protein M634_04645 PF01931 Protein of unknown function DUF84 M634_04650 PF00800 Prephenate dehydratase M634_04650 PF01817 Chorismate mutase type II M634_04655 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein M634_04660 PF01464 Transglycosylase SLT domain M634_04665 PF13525 Outer membrane lipoprotein M634_04670 PF00849 RNA pseudouridylate synthase M634_04670 PF01479 S4 domain M634_04680 PF02861 Clp amino terminal domain, pathogenicity island component M634_04680 PF00004 ATPase family associated with various cellular activities (AAA) M634_04680 PF07724 AAA domain (Cdc48 subfamily) M634_04680 PF10431 C-terminal, D2-small domain, of ClpB protein M634_04680 PF17871 AAA lid domain M634_04725 PF03411 Penicillin-insensitive murein endopeptidase M634_04735 PF00037 4Fe-4S binding domain M634_04745 PF04381 Putative exonuclease, RdgC M634_04750 PF00072 Response regulator receiver domain M634_04750 PF00486 Transcriptional regulatory protein, C terminal M634_04755 PF11808 Phosphate regulon sensor protein PhoR M634_04755 PF00989 PAS fold M634_04755 PF00512 His Kinase A (phospho-acceptor) domain M634_04755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_04760 PF12849 PBP superfamily domain M634_04765 PF02541 Ppx/GppA phosphatase family M634_04770 PF02503 Polyphosphate kinase middle domain M634_04770 PF13090 Polyphosphate kinase C-terminal domain 2 M634_04770 PF13089 Polyphosphate kinase N-terminal domain M634_04770 PF17941 Polyphosphate kinase C-terminal domain 1 M634_04775 PF00528 Binding-protein-dependent transport system inner membrane component M634_04780 PF00528 Binding-protein-dependent transport system inner membrane component M634_04785 PF00005 ABC transporter M634_04790 PF01895 PhoU domain M634_04795 PF03976 Polyphosphate kinase 2 (PPK2) M634_04800 PF03932 CutC family M634_04805 PF10417 C-terminal domain of 1-Cys peroxiredoxin M634_04805 PF00578 AhpC/TSA family M634_04810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_04810 PF03466 LysR substrate binding domain M634_04815 PF01274 Malate synthase M634_04820 PF00463 Isocitrate lyase family M634_04825 PF00571 CBS domain M634_04835 PF02547 Queuosine biosynthesis protein M634_04840 PF01702 Queuine tRNA-ribosyltransferase M634_04845 PF02699 Preprotein translocase subunit M634_04850 PF13721 SecD export protein N-terminal TM region M634_04850 PF07549 SecD/SecF GG Motif M634_04850 PF02355 Protein export membrane protein M634_04855 PF07549 SecD/SecF GG Motif M634_04855 PF02355 Protein export membrane protein M634_04860 PF00459 Inositol monophosphatase family M634_04865 PF00588 SpoU rRNA Methylase family M634_04870 PF02082 Transcriptional regulator M634_04875 PF00266 Aminotransferase class-V M634_04880 PF01592 NifU-like N terminal domain M634_04885 PF01521 Iron-sulphur cluster biosynthesis M634_04890 PF00226 DnaJ domain M634_04890 PF07743 HSCB C-terminal oligomerisation domain M634_04895 PF00012 Hsp70 protein M634_04900 PF00111 2Fe-2S iron-sulfur cluster binding domain M634_04905 PF04384 Iron-sulphur cluster assembly M634_04910 PF00883 Cytosol aminopeptidase family, catalytic domain M634_04910 PF12404 Peptidase M634_04915 PF00334 Nucleoside diphosphate kinase M634_04920 PF04055 Radical SAM superfamily M634_04925 PF13464 Domain of unknown function (DUF4115) M634_04930 PF04551 GcpE protein M634_04935 PF03129 Anticodon binding domain M634_04935 PF13393 Histidyl-tRNA synthetase M634_04940 PF09976 Tetratricopeptide repeat-like domain M634_04945 PF13360 PQQ-like domain M634_04950 PF01926 50S ribosome-binding GTPase M634_04950 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal M634_04965 PF13742 OB-fold nucleic acid binding domain M634_04965 PF02601 Exonuclease VII, large subunit M634_04970 PF00478 IMP dehydrogenase / GMP reductase domain M634_04970 PF00571 CBS domain M634_04975 PF02540 NAD synthase M634_04975 PF00958 GMP synthase C terminal domain M634_04975 PF00117 Glutamine amidotransferase class-I M634_04980 PF00589 Phage integrase family M634_04980 PF13356 Arm DNA-binding domain M634_05045 PF03553 Na+/H+ antiporter family M634_05050 PF06483 Chitinase C M634_05050 PF00704 Glycosyl hydrolases family 18 M634_05055 PF01184 GPR1/FUN34/yaaH family M634_05065 PF01235 Sodium:alanine symporter family M634_05070 PF01266 FAD dependent oxidoreductase M634_05075 PF03466 LysR substrate binding domain M634_05075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_05095 PF07969 Amidohydrolase family M634_05100 PF01053 Cys/Met metabolism PLP-dependent enzyme M634_05105 PF00202 Aminotransferase class-III M634_05125 PF00795 Carbon-nitrogen hydrolase M634_05125 PF00583 Acetyltransferase (GNAT) family M634_05130 PF03466 LysR substrate binding domain M634_05130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_05140 PF01668 SmpB protein M634_05145 PF03364 Polyketide cyclase / dehydrase and lipid transport M634_05150 PF03658 RnfH family Ubiquitin M634_05155 PF04355 SmpA / OmlA family M634_05160 PF02463 RecF/RecN/SMC N terminal domain M634_05170 PF01513 ATP-NAD kinase M634_05175 PF01025 GrpE M634_05180 PF00375 Sodium:dicarboxylate symporter family M634_05185 PF00012 Hsp70 protein M634_05190 PF00226 DnaJ domain M634_05190 PF01556 DnaJ C terminal domain M634_05190 PF00684 DnaJ central domain M634_05195 PF07963 Prokaryotic N-terminal methylation motif M634_05195 PF00114 Pilin (bacterial filament) M634_05225 PF03806 AbgT putative transporter family M634_05230 PF14437 MafB19-like deaminase M634_05240 PF01464 Transglycosylase SLT domain M634_05240 PF00497 Bacterial extracellular solute-binding proteins, family 3 M634_05245 PF02769 AIR synthase related protein, C-terminal domain M634_05245 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain M634_05245 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal M634_05270 PF07687 Peptidase dimerisation domain M634_05270 PF01546 Peptidase family M20/M25/M40 M634_05280 PF00860 Permease family M634_05285 PF00156 Phosphoribosyl transferase domain M634_05295 PF07417 Sigma factor-binding transcriptional regulator Crl M634_05300 PF01472 PUA domain M634_05300 PF00696 Amino acid kinase family M634_05305 PF00171 Aldehyde dehydrogenase family M634_05310 PF03477 ATP cone domain M634_05315 PF01872 RibD C-terminal domain M634_05315 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M634_05320 PF00677 Lumazine binding domain M634_05325 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase M634_05325 PF00925 GTP cyclohydrolase II M634_05330 PF00885 6,7-dimethyl-8-ribityllumazine synthase M634_05335 PF01029 NusB family M634_05340 PF00586 AIR synthase related protein, N-terminal domain M634_05340 PF02769 AIR synthase related protein, C-terminal domain M634_05345 PF04608 Phosphatidylglycerophosphatase A M634_05350 PF13292 1-deoxy-D-xylulose-5-phosphate synthase M634_05350 PF02780 Transketolase, C-terminal domain M634_05350 PF02779 Transketolase, pyrimidine binding domain M634_05355 PF00348 Polyprenyl synthetase M634_05360 PF02609 Exonuclease VII small subunit M634_05365 PF01618 MotA/TolQ/ExbB proton channel family M634_05370 PF00691 OmpA family M634_05375 PF02568 Thiamine biosynthesis protein (ThiI) M634_05375 PF02926 THUMP domain M634_05380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_05380 PF03466 LysR substrate binding domain M634_05390 PF04241 Protein of unknown function (DUF423) M634_05395 PF01728 FtsJ-like methyltransferase M634_05395 PF18125 RlmM ferredoxin-like domain M634_05400 PF01223 DNA/RNA non-specific endonuclease M634_05405 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M634_05405 PF01367 5'-3' exonuclease, C-terminal SAM fold M634_05410 PF11892 Domain of unknown function (DUF3412) M634_05410 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases M634_05410 PF03641 Possible lysine decarboxylase M634_05415 PF00072 Response regulator receiver domain M634_05415 PF00990 Diguanylate cyclase, GGDEF domain M634_05425 PF14489 QueF-like protein M634_05425 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term M634_05430 PF07348 Syd protein (SUKH-2) M634_05435 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) M634_05440 PF03180 NLPA lipoprotein M634_05445 PF00528 Binding-protein-dependent transport system inner membrane component M634_05450 PF00005 ABC transporter M634_05450 PF09383 NIL domain M634_05460 PF00356 Bacterial regulatory proteins, lacI family M634_05465 PF00367 phosphotransferase system, EIIB M634_05465 PF02378 Phosphotransferase system, EIIC M634_05470 PF16657 Maltogenic Amylase, C-terminal domain M634_05470 PF00128 Alpha amylase, catalytic domain M634_05480 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) M634_05480 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 M634_05485 PF00464 Serine hydroxymethyltransferase M634_05490 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family M634_05490 PF04055 Radical SAM superfamily M634_05495 PF03099 Biotin/lipoate A/B protein ligase family M634_05500 PF04359 Protein of unknown function (DUF493) M634_05505 PF00768 D-alanyl-D-alanine carboxypeptidase M634_05505 PF07943 Penicillin-binding protein 5, C-terminal domain M634_05510 PF03330 Lytic transglycolase M634_05510 PF05036 Sporulation related domain M634_05515 PF01098 Cell cycle protein M634_05520 PF03717 Penicillin-binding Protein dimerisation domain M634_05520 PF00905 Penicillin binding protein transpeptidase domain M634_05525 PF02590 Predicted SPOUT methyltransferase M634_05535 PF14840 Processivity clamp loader gamma complex DNA pol III C-term M634_05535 PF06144 DNA polymerase III, delta subunit M634_05540 PF04390 Lipopolysaccharide-assembly M634_05545 PF13603 Leucyl-tRNA synthetase, Domain 2 M634_05545 PF00133 tRNA synthetases class I (I, L, M and V) M634_05545 PF08264 Anticodon-binding domain of tRNA M634_05550 PF07295 Zinc-ribbon containing domain M634_05555 PF00795 Carbon-nitrogen hydrolase M634_05560 PF00571 CBS domain M634_05560 PF03471 Transporter associated domain M634_05565 PF02130 Uncharacterized protein family UPF0054 M634_05570 PF02562 PhoH-like protein M634_05575 PF04055 Radical SAM superfamily M634_05575 PF00919 Uncharacterized protein family UPF0004 M634_05575 PF01938 TRAM domain M634_05580 PF01494 FAD binding domain M634_05695 PF06071 Protein of unknown function (DUF933) M634_05695 PF01926 50S ribosome-binding GTPase M634_05700 PF01195 Peptidyl-tRNA hydrolase M634_05705 PF14572 Phosphoribosyl synthetase-associated domain M634_05705 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase M634_05710 PF00288 GHMP kinases N terminal domain M634_05710 PF08544 GHMP kinases C terminal M634_05715 PF03550 Outer membrane lipoprotein LolB M634_05720 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain M634_05720 PF01488 Shikimate / quinate 5-dehydrogenase M634_05720 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain M634_05725 PF00472 RF-1 domain M634_05725 PF03462 PCRF domain M634_05730 PF13847 Methyltransferase domain M634_05730 PF17827 PrmC N-terminal domain M634_05735 PF04247 Invasion gene expression up-regulator, SirB M634_05740 PF13369 Transglutaminase-like superfamily M634_05745 PF00793 DAHP synthetase I family M634_05750 PF00149 Calcineurin-like phosphoesterase M634_05750 PF02872 5'-nucleotidase, C-terminal domain M634_05755 PF04073 Aminoacyl-tRNA editing domain M634_05760 PF01479 S4 domain M634_05760 PF00849 RNA pseudouridylate synthase M634_05765 PF01713 Smr domain M634_05785 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain M634_05785 PF02838 Glycosyl hydrolase family 20, domain 2 M634_05785 PF00728 Glycosyl hydrolase family 20, catalytic domain M634_05785 PF03173 Putative carbohydrate binding domain M634_05800 PF00403 Heavy-metal-associated domain M634_05810 PF13609 Gram-negative porin M634_05815 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) M634_05820 PF00749 tRNA synthetases class I (E and Q), catalytic domain M634_05825 PF01389 OmpA-like transmembrane domain M634_05825 PF00691 OmpA family M634_05870 PF01584 CheW-like domain M634_05870 PF00072 Response regulator receiver domain M634_05875 PF01739 CheR methyltransferase, SAM binding domain M634_05875 PF03705 CheR methyltransferase, all-alpha domain M634_05880 PF00460 Flagella basal body rod protein M634_05885 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M634_05885 PF00460 Flagella basal body rod protein M634_05890 PF03963 Flagellar hook capping protein - N-terminal region M634_05890 PF13860 FlgD Ig-like domain M634_05890 PF13861 FlgD Tudor-like domain M634_05895 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M634_05895 PF00460 Flagella basal body rod protein M634_05895 PF07559 Flagellar basal body protein FlaE M634_05905 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M634_05905 PF00460 Flagella basal body rod protein M634_05910 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M634_05910 PF00460 Flagella basal body rod protein M634_05915 PF02107 Flagellar L-ring protein M634_05920 PF02119 Flagellar P-ring protein M634_05925 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase M634_05925 PF10135 Rod binding protein M634_05930 PF07196 Flagellin hook IN motif M634_05930 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M634_05935 PF00669 Bacterial flagellin N-terminal helical region M634_05940 PF00700 Bacterial flagellin C-terminal helical region M634_05940 PF00669 Bacterial flagellin N-terminal helical region M634_05940 PF07196 Flagellin hook IN motif M634_05950 PF00669 Bacterial flagellin N-terminal helical region M634_05950 PF07196 Flagellin hook IN motif M634_05950 PF00700 Bacterial flagellin C-terminal helical region M634_05955 PF00700 Bacterial flagellin C-terminal helical region M634_05955 PF00669 Bacterial flagellin N-terminal helical region M634_05955 PF07196 Flagellin hook IN motif M634_05960 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 M634_05965 PF00391 PEP-utilising enzyme, mobile domain M634_05965 PF02896 PEP-utilising enzyme, TIM barrel domain M634_05965 PF05524 PEP-utilising enzyme, N-terminal M634_05970 PF00381 PTS HPr component phosphorylation site M634_05975 PF00291 Pyridoxal-phosphate dependent enzyme M634_05985 PF04354 ZipA, C-terminal FtsZ-binding domain M634_05990 PF01653 NAD-dependent DNA ligase adenylation domain M634_05990 PF03120 NAD-dependent DNA ligase OB-fold domain M634_05990 PF03119 NAD-dependent DNA ligase C4 zinc finger domain M634_05990 PF12826 Helix-hairpin-helix motif M634_05990 PF00533 BRCA1 C Terminus (BRCT) domain M634_06000 PF03573 outer membrane porin, OprD family M634_06010 PF16200 C-terminal region of band_7 M634_06010 PF01145 SPFH domain / Band 7 family M634_06015 PF11658 Cellulose biosynthesis protein BcsG M634_06025 PF10995 Cellulose biosynthesis GIL M634_06035 PF06564 Cellulose biosynthesis protein BcsQ M634_06040 PF03552 Cellulose synthase M634_06040 PF00535 Glycosyl transferase family 2 M634_06040 PF07238 PilZ domain M634_06045 PF03170 Bacterial cellulose synthase subunit M634_06050 PF01270 Glycosyl hydrolases family 8 M634_06055 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) M634_06060 PF00085 Thioredoxin M634_06065 PF00106 short chain dehydrogenase M634_06070 PF08338 Domain of unknown function (DUF1731) M634_06070 PF01370 NAD dependent epimerase/dehydratase family M634_06075 PF07556 Protein of unknown function (DUF1538) M634_06080 PF07556 Protein of unknown function (DUF1538) M634_06095 PF12850 Calcineurin-like phosphoesterase superfamily domain M634_06110 PF17323 Trans-membrane regulatory protein ToxS M634_06115 PF00486 Transcriptional regulatory protein, C terminal M634_06120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_06120 PF00183 Hsp90 protein M634_06125 PF05191 Adenylate kinase, active site lid M634_06130 PF00762 Ferrochelatase M634_06135 PF00854 POT family M634_06140 PF02357 Transcription termination factor nusG M634_06145 PF00733 Asparagine synthase M634_06145 PF13537 Glutamine amidotransferase domain M634_06150 PF00999 Sodium/hydrogen exchanger family M634_06150 PF02254 TrkA-N domain M634_06155 PF00480 ROK family M634_06155 PF01047 MarR family M634_06160 PF01979 Amidohydrolase family M634_06165 PF02378 Phosphotransferase system, EIIC M634_06165 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 M634_06165 PF00367 phosphotransferase system, EIIB M634_06170 PF00749 tRNA synthetases class I (E and Q), catalytic domain M634_06170 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain M634_06175 PF01475 Ferric uptake regulator family M634_06185 PF00258 Flavodoxin M634_06195 PF12697 Alpha/beta hydrolase family M634_06200 PF17206 SeqA protein N-terminal domain M634_06200 PF03925 SeqA protein C-terminal domain M634_06205 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M634_06205 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M634_06205 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M634_06205 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M634_06215 PF01784 NIF3 (NGG1p interacting factor 3) M634_06220 PF00285 Citrate synthase, C-terminal domain M634_06225 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M634_06230 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M634_06235 PF00890 FAD binding domain M634_06235 PF02910 Fumarate reductase flavoprotein C-term M634_06240 PF13085 2Fe-2S iron-sulfur cluster binding domain M634_06245 PF02779 Transketolase, pyrimidine binding domain M634_06245 PF16078 2-oxoglutarate dehydrogenase N-terminus M634_06245 PF16870 2-oxoglutarate dehydrogenase C-terminal M634_06245 PF00676 Dehydrogenase E1 component M634_06250 PF00364 Biotin-requiring enzyme M634_06250 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M634_06250 PF02817 e3 binding domain M634_06255 PF00549 CoA-ligase M634_06255 PF08442 ATP-grasp domain M634_06260 PF02629 CoA binding domain M634_06260 PF00549 CoA-ligase M634_06265 PF00950 ABC 3 transport family M634_06270 PF00005 ABC transporter M634_06275 PF01297 Zinc-uptake complex component A periplasmic M634_06280 PF12833 Helix-turn-helix domain M634_06280 PF02311 AraC-like ligand binding domain M634_06290 PF04023 FeoA domain M634_06295 PF07670 Nucleoside recognition M634_06295 PF07664 Ferrous iron transport protein B C terminus M634_06295 PF02421 Ferrous iron transport protein B M634_06295 PF17910 FeoB cytosolic helical domain M634_06310 PF05746 DALR anticodon binding domain M634_06310 PF03485 Arginyl tRNA synthetase N terminal domain M634_06310 PF00750 tRNA synthetases class I (R) M634_06320 PF06185 YecM protein M634_06325 PF01842 ACT domain M634_06325 PF00551 Formyl transferase M634_06330 PF13307 Helicase C-terminal domain M634_06330 PF04851 Type III restriction enzyme, res subunit M634_06335 PF00814 Glycoprotease family M634_06350 PF00561 alpha/beta hydrolase fold M634_06355 PF13193 AMP-binding enzyme C-terminal domain M634_06355 PF00501 AMP-binding enzyme M634_06360 PF00570 HRDC domain M634_06360 PF01612 3'-5' exonuclease M634_06365 PF03776 Septum formation topological specificity factor MinE M634_06370 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain M634_06375 PF05209 Septum formation inhibitor MinC, N-terminal domain M634_06375 PF03775 Septum formation inhibitor MinC, C-terminal domain M634_06380 PF05166 YcgL domain M634_06385 PF13406 Transglycosylase SLT domain M634_06390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_06390 PF03466 LysR substrate binding domain M634_06395 PF07662 Na+ dependent nucleoside transporter C-terminus M634_06395 PF01773 Na+ dependent nucleoside transporter N-terminus M634_06395 PF07670 Nucleoside recognition M634_06400 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain M634_06400 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain M634_06415 PF02801 Beta-ketoacyl synthase, C-terminal domain M634_06415 PF00109 Beta-ketoacyl synthase, N-terminal domain M634_06425 PF07977 FabA-like domain M634_06430 PF00109 Beta-ketoacyl synthase, N-terminal domain M634_06430 PF02801 Beta-ketoacyl synthase, C-terminal domain M634_06455 PF00221 Aromatic amino acid lyase M634_06460 PF00535 Glycosyl transferase family 2 M634_06465 PF07977 FabA-like domain M634_06480 PF00550 Phosphopantetheine attachment site M634_06485 PF00550 Phosphopantetheine attachment site M634_06510 PF04820 Tryptophan halogenase M634_06520 PF03471 Transporter associated domain M634_06520 PF00571 CBS domain M634_06520 PF01595 Cyclin M transmembrane N-terminal domain M634_06525 PF00270 DEAD/DEAH box helicase M634_06525 PF00271 Helicase conserved C-terminal domain M634_06530 PF02254 TrkA-N domain M634_06530 PF02080 TrkA-C domain M634_06535 PF02386 Cation transport protein M634_06550 PF02696 Uncharacterized ACR, YdiU/UPF0061 family M634_06555 PF03480 Bacterial extracellular solute-binding protein, family 7 M634_06560 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component M634_06565 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component M634_06575 PF00072 Response regulator receiver domain M634_06575 PF02954 Bacterial regulatory protein, Fis family M634_06575 PF00158 Sigma-54 interaction domain M634_06580 PF00512 His Kinase A (phospho-acceptor) domain M634_06580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_06580 PF02743 Cache domain M634_06590 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M634_06590 PF05698 Bacterial trigger factor protein (TF) C-terminus M634_06590 PF05697 Bacterial trigger factor protein (TF) M634_06595 PF00574 Clp protease M634_06600 PF07724 AAA domain (Cdc48 subfamily) M634_06600 PF06689 ClpX C4-type zinc finger M634_06600 PF10431 C-terminal, D2-small domain, of ClpB protein M634_06605 PF05362 Lon protease (S16) C-terminal proteolytic domain M634_06605 PF00004 ATPase family associated with various cellular activities (AAA) M634_06605 PF02190 ATP-dependent protease La (LON) substrate-binding domain M634_06610 PF00216 Bacterial DNA-binding protein M634_06615 PF13145 PPIC-type PPIASE domain M634_06635 PF01966 HD domain M634_06635 PF13286 Phosphohydrolase-associated domain M634_06645 PF00155 Aminotransferase class I and II M634_06650 PF00425 chorismate binding enzyme M634_06655 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M634_06655 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M634_06655 PF16582 Middle domain of thiamine pyrophosphate M634_06660 PF12697 Alpha/beta hydrolase family M634_06665 PF00378 Enoyl-CoA hydratase/isomerase M634_06670 PF13378 Enolase C-terminal domain-like M634_06675 PF13193 AMP-binding enzyme C-terminal domain M634_06675 PF00501 AMP-binding enzyme M634_06685 PF03601 Conserved hypothetical protein 698 M634_06690 PF07690 Major Facilitator Superfamily M634_06735 PF13533 Biotin-lipoyl like M634_06740 PF00873 AcrB/AcrD/AcrF family M634_06760 PF00291 Pyridoxal-phosphate dependent enzyme M634_06765 PF01037 Lrp/AsnC ligand binding domain M634_06765 PF13404 AsnC-type helix-turn-helix domain M634_06780 PF09619 Type III secretion system lipoprotein chaperone (YscW) M634_06785 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M634_06795 PF17152 Periplasmic sensor domain M634_06795 PF00990 Diguanylate cyclase, GGDEF domain M634_06800 PF08032 RNA 2'-O ribose methyltransferase substrate binding M634_06800 PF00588 SpoU rRNA Methylase family M634_06805 PF11953 Domain of unknown function (DUF3470) M634_06805 PF00037 4Fe-4S binding domain M634_06815 PF00478 IMP dehydrogenase / GMP reductase domain M634_06815 PF00571 CBS domain M634_06820 PF00403 Heavy-metal-associated domain M634_06825 PF01048 Phosphorylase superfamily M634_06835 PF00672 HAMP domain M634_06835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M634_06840 PF01230 HIT domain M634_06855 PF13036 Peptidoglycan-synthase activator LpoB M634_06855 PF08139 Prokaryotic membrane lipoprotein lipid attachment site M634_06865 PF05728 Uncharacterised protein family (UPF0227) M634_06870 PF07992 Pyridine nucleotide-disulphide oxidoreductase M634_06885 PF00270 DEAD/DEAH box helicase M634_06885 PF17757 UvrB interaction domain M634_06885 PF02559 CarD-like/TRCF domain M634_06885 PF00271 Helicase conserved C-terminal domain M634_06885 PF03461 TRCF domain M634_06895 PF12704 MacB-like periplasmic core domain M634_06895 PF02687 FtsX-like permease family M634_06900 PF00005 ABC transporter M634_06905 PF12704 MacB-like periplasmic core domain M634_06905 PF02687 FtsX-like permease family M634_06915 PF13567 Domain of unknown function (DUF4131) M634_06915 PF00753 Metallo-beta-lactamase superfamily M634_06915 PF03772 Competence protein M634_06920 PF00664 ABC transporter transmembrane region M634_06920 PF00005 ABC transporter M634_06925 PF02606 Tetraacyldisaccharide-1-P 4'-kinase M634_06930 PF03966 Trm112p-like protein M634_06935 PF02348 Cytidylyltransferase M634_06940 PF04293 SpoVR like protein M634_06945 PF04285 Protein of unknown function (DUF444) M634_06950 PF06798 PrkA serine protein kinase C-terminal domain M634_06950 PF08298 PrkA AAA domain M634_06955 PF03887 YfbU domain M634_06965 PF04055 Radical SAM superfamily M634_06975 PF02901 Pyruvate formate lyase-like M634_06975 PF01228 Glycine radical M634_06990 PF00005 ABC transporter M634_06995 PF00497 Bacterial extracellular solute-binding proteins, family 3 M634_07000 PF00528 Binding-protein-dependent transport system inner membrane component M634_07005 PF00528 Binding-protein-dependent transport system inner membrane component M634_07015 PF03372 Endonuclease/Exonuclease/phosphatase family M634_07020 PF10689 Protein of unknown function (DUF2496) M634_07025 PF07445 Primosomal replication protein priC M634_07030 PF01925 Sulfite exporter TauE/SafE M634_07035 PF06733 DEAD_2 M634_07035 PF13307 Helicase C-terminal domain M634_07045 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) M634_07050 PF00849 RNA pseudouridylate synthase M634_07055 PF03971 Monomeric isocitrate dehydrogenase M634_07060 PF00313 'Cold-shock' DNA-binding domain M634_07065 PF02617 ATP-dependent Clp protease adaptor protein ClpS M634_07070 PF10431 C-terminal, D2-small domain, of ClpB protein M634_07070 PF02861 Clp amino terminal domain, pathogenicity island component M634_07070 PF17871 AAA lid domain M634_07070 PF07724 AAA domain (Cdc48 subfamily) M634_07070 PF00004 ATPase family associated with various cellular activities (AAA) M634_07080 PF01176 Translation initiation factor 1A / IF-1 M634_07085 PF04377 Arginine-tRNA-protein transferase, C terminus M634_07085 PF04376 Arginine-tRNA-protein transferase, N terminus M634_07090 PF03588 Leucyl/phenylalanyl-tRNA protein transferase M634_07100 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M634_07105 PF10692 Protein of unknown function (DUF2498) M634_07110 PF08272 Topoisomerase I zinc-ribbon-like M634_07110 PF01396 Topoisomerase DNA binding C4 zinc finger M634_07110 PF01751 Toprim domain M634_07110 PF01131 DNA topoisomerase M634_07115 PF00483 Nucleotidyl transferase M634_07120 PF08323 Starch synthase catalytic domain M634_07120 PF00534 Glycosyl transferases group 1 M634_07140 PF04993 TfoX N-terminal domain M634_07140 PF04994 TfoX C-terminal domain M634_07145 PF00356 Bacterial regulatory proteins, lacI family M634_07150 PF02613 Nitrate reductase delta subunit M634_07155 PF00072 Response regulator receiver domain M634_07155 PF00486 Transcriptional regulatory protein, C terminal M634_07160 PF02698 DUF218 domain M634_07170 PF17193 MukF C-terminal domain M634_07170 PF17192 MukF middle domain M634_07170 PF03882 MukF winged-helix domain M634_07175 PF04288 MukE-like family M634_07180 PF04310 MukB N-terminal M634_07180 PF16330 MukB hinge domain M634_07190 PF18030 RimK PreATP-grasp domain M634_07190 PF08443 RimK-like ATP-grasp domain M634_07200 PF08443 RimK-like ATP-grasp domain M634_07200 PF18030 RimK PreATP-grasp domain M634_07205 PF08003 Protein of unknown function (DUF1698) M634_07210 PF13649 Methyltransferase domain M634_07215 PF01904 Protein of unknown function DUF72 M634_07220 PF00152 tRNA synthetases class II (D, K and N) M634_07220 PF01336 OB-fold nucleic acid binding domain M634_07220 PF02938 GAD domain M634_07225 PF02075 Crossover junction endodeoxyribonuclease RuvC M634_07240 PF07499 RuvA, C-terminal domain M634_07240 PF01330 RuvA N terminal domain M634_07245 PF05496 Holliday junction DNA helicase RuvB P-loop domain M634_07245 PF05491 RuvB C-terminal winged helix domain M634_07245 PF17864 RuvB AAA lid domain M634_07250 PF01654 Cytochrome bd terminal oxidase subunit I M634_07255 PF02322 Cytochrome bd terminal oxidase subunit II M634_07260 PF08173 Membrane bound YbgT-like protein M634_07270 PF03061 Thioesterase superfamily M634_07275 PF01618 MotA/TolQ/ExbB proton channel family M634_07280 PF02472 Biopolymer transport protein ExbD/TolR M634_07290 PF07676 WD40-like Beta Propeller Repeat M634_07290 PF04052 TolB amino-terminal domain M634_07295 PF00691 OmpA family M634_07300 PF13174 Tetratricopeptide repeat M634_07300 PF16331 TolA binding protein trimerisation M634_07305 PF02445 Quinolinate synthetase A protein M634_07315 PF03994 Domain of Unknown Function (DUF350) M634_07325 PF03738 Glutathionylspermidine synthase preATP-grasp M634_07335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_07335 PF00072 Response regulator receiver domain M634_07335 PF09308 LuxQ, periplasmic M634_07335 PF00512 His Kinase A (phospho-acceptor) domain M634_07340 PF06610 L-alanine exporter M634_07360 PF02796 Helix-turn-helix domain of resolvase M634_07360 PF00239 Resolvase, N terminal domain M634_07370 PF00672 HAMP domain M634_07370 PF12729 Four helix bundle sensory module for signal transduction M634_07370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M634_07375 PF00529 HlyD membrane-fusion protein of T1SS M634_07375 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M634_07380 PF00873 AcrB/AcrD/AcrF family M634_07400 PF00579 tRNA synthetases class I (W and Y) M634_07415 PF03372 Endonuclease/Exonuclease/phosphatase family M634_07420 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) M634_07430 PF03466 LysR substrate binding domain M634_07430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_07440 PF01262 Alanine dehydrogenase/PNT, C-terminal domain M634_07440 PF05222 Alanine dehydrogenase/PNT, N-terminal domain M634_07445 PF01037 Lrp/AsnC ligand binding domain M634_07450 PF13491 4TM region of DNA translocase FtsK/SpoIIIE M634_07450 PF17854 FtsK alpha domain M634_07450 PF09397 Ftsk gamma domain M634_07450 PF01580 FtsK/SpoIIIE family M634_07455 PF03548 Outer membrane lipoprotein carrier protein LolA M634_07460 PF00004 ATPase family associated with various cellular activities (AAA) M634_07460 PF16193 AAA C-terminal domain M634_07460 PF12002 MgsA AAA+ ATPase C terminal M634_07465 PF02403 Seryl-tRNA synthetase N-terminal domain M634_07465 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M634_07480 PF01258 Prokaryotic dksA/traR C4-type zinc finger M634_07485 PF00202 Aminotransferase class-III M634_07490 PF04055 Radical SAM superfamily M634_07490 PF06968 Biotin and Thiamin Synthesis associated domain M634_07495 PF00155 Aminotransferase class I and II M634_07500 PF08241 Methyltransferase domain M634_07515 PF01435 Peptidase family M48 M634_07525 PF00106 short chain dehydrogenase M634_07560 PF08328 Adenylosuccinate lyase C-terminal M634_07560 PF00206 Lyase M634_07565 PF04356 Protein of unknown function (DUF489) M634_07580 PF00294 pfkB family carbohydrate kinase M634_07585 PF00816 H-NS histone family M634_07590 PF03553 Na+/H+ antiporter family M634_07600 PF00158 Sigma-54 interaction domain M634_07600 PF02954 Bacterial regulatory protein, Fis family M634_07600 PF00072 Response regulator receiver domain M634_07605 PF08029 HisG, C-terminal domain M634_07605 PF01634 ATP phosphoribosyltransferase M634_07610 PF00815 Histidinol dehydrogenase M634_07615 PF00155 Aminotransferase class I and II M634_07620 PF08645 Polynucleotide kinase 3 phosphatase M634_07620 PF00475 Imidazoleglycerol-phosphate dehydratase M634_07625 PF00117 Glutamine amidotransferase class-I M634_07630 PF00977 Histidine biosynthesis protein M634_07635 PF00977 Histidine biosynthesis protein M634_07640 PF01502 Phosphoribosyl-AMP cyclohydrolase M634_07640 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase M634_07645 PF02810 SEC-C motif M634_07650 PF08668 HDOD domain M634_07650 PF00563 EAL domain M634_07655 PF00149 Calcineurin-like phosphoesterase M634_07660 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M634_07665 PF01406 tRNA synthetases class I (C) catalytic domain M634_07665 PF09190 DALR domain M634_07670 PF00265 Thymidine kinase M634_07675 PF02698 DUF218 domain M634_07700 PF01226 Formate/nitrite transporter M634_07710 PF03649 Uncharacterised protein family (UPF0014) M634_07715 PF06796 Periplasmic nitrate reductase protein NapE M634_07720 PF03264 NapC/NirT cytochrome c family, N-terminal region M634_07725 PF00384 Molybdopterin oxidoreductase M634_07725 PF18364 Molybdopterin oxidoreductase N-terminal domain M634_07725 PF01568 Molydopterin dinucleotide binding domain M634_07740 PF02833 DHHA2 domain M634_07740 PF01368 DHH family M634_07750 PF00005 ABC transporter M634_07755 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M634_07755 PF00005 ABC transporter M634_07760 PF12911 N-terminal TM domain of oligopeptide transport permease C M634_07760 PF00528 Binding-protein-dependent transport system inner membrane component M634_07765 PF00528 Binding-protein-dependent transport system inner membrane component M634_07770 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M634_07775 PF00158 Sigma-54 interaction domain M634_07775 PF02954 Bacterial regulatory protein, Fis family M634_07780 PF04012 PspA/IM30 family M634_07785 PF06667 Phage shock protein B M634_07790 PF04024 PspC domain M634_07795 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M634_07800 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M634_07805 PF00873 AcrB/AcrD/AcrF family M634_07810 PF03352 Methyladenine glycosylase M634_07815 PF03280 Proteobacterial lipase chaperone protein M634_07820 PF00561 alpha/beta hydrolase fold M634_07825 PF01053 Cys/Met metabolism PLP-dependent enzyme M634_07830 PF13396 Phospholipase_D-nuclease N-terminal M634_07830 PF13091 PLD-like domain M634_07835 PF00209 Sodium:neurotransmitter symporter family M634_07840 PF00672 HAMP domain M634_07840 PF12729 Four helix bundle sensory module for signal transduction M634_07840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M634_07845 PF00849 RNA pseudouridylate synthase M634_07855 PF00175 Oxidoreductase NAD-binding domain M634_07855 PF00111 2Fe-2S iron-sulfur cluster binding domain M634_07855 PF00970 Oxidoreductase FAD-binding domain M634_07860 PF03063 Prismane/CO dehydrogenase family M634_07865 PF00158 Sigma-54 interaction domain M634_07865 PF01590 GAF domain M634_07875 PF01066 CDP-alcohol phosphatidyltransferase M634_07880 PF00005 ABC transporter M634_07885 PF00528 Binding-protein-dependent transport system inner membrane component M634_07890 PF13416 Bacterial extracellular solute-binding protein M634_07895 PF09335 SNARE associated Golgi protein M634_07905 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster M634_07905 PF07992 Pyridine nucleotide-disulphide oxidoreductase M634_07915 PF00512 His Kinase A (phospho-acceptor) domain M634_07915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_07920 PF00072 Response regulator receiver domain M634_07920 PF00196 Bacterial regulatory proteins, luxR family M634_07930 PF06945 Protein of unknown function (DUF1289) M634_07940 PF00149 Calcineurin-like phosphoesterase M634_07940 PF02872 5'-nucleotidase, C-terminal domain M634_07955 PF01386 Ribosomal L25p family M634_07960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_07960 PF00512 His Kinase A (phospho-acceptor) domain M634_07960 PF00672 HAMP domain M634_07965 PF00072 Response regulator receiver domain M634_07965 PF00486 Transcriptional regulatory protein, C terminal M634_07975 PF04851 Type III restriction enzyme, res subunit M634_07975 PF00271 Helicase conserved C-terminal domain M634_07980 PF00849 RNA pseudouridylate synthase M634_07980 PF01479 S4 domain M634_07990 PF07690 Major Facilitator Superfamily M634_08005 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) M634_08020 PF03264 NapC/NirT cytochrome c family, N-terminal region M634_08025 PF11066 Protein of unknown function (DUF2867) M634_08025 PF13460 NAD(P)H-binding M634_08030 PF01554 MatE M634_08035 PF00005 ABC transporter M634_08050 PF06965 Na+/H+ antiporter 1 M634_08055 PF16295 Tetracyclin repressor-like, C-terminal domain M634_08055 PF00440 Bacterial regulatory proteins, tetR family M634_08060 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M634_08060 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M634_08060 PF09317 Domain of unknown function (DUF1974) M634_08060 PF02770 Acyl-CoA dehydrogenase, middle domain M634_08065 PF12241 Trans-2-enoyl-CoA reductase catalytic region M634_08065 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase M634_08065 PF07055 Enoyl reductase FAD binding domain M634_08070 PF02080 TrkA-C domain M634_08070 PF06826 Predicted Permease Membrane Region M634_08075 PF00462 Glutaredoxin M634_08080 PF00465 Iron-containing alcohol dehydrogenase M634_08085 PF01418 Helix-turn-helix domain, rpiR family M634_08085 PF01380 SIS domain M634_08090 PF00282 Pyridoxal-dependent decarboxylase conserved domain M634_08100 PF03956 Lysine exporter LysO M634_08110 PF04993 TfoX N-terminal domain M634_08110 PF04994 TfoX C-terminal domain M634_08125 PF00512 His Kinase A (phospho-acceptor) domain M634_08125 PF00497 Bacterial extracellular solute-binding proteins, family 3 M634_08125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_08135 PF00266 Aminotransferase class-V M634_08140 PF00291 Pyridoxal-phosphate dependent enzyme M634_08145 PF00664 ABC transporter transmembrane region M634_08145 PF00005 ABC transporter M634_08150 PF00664 ABC transporter transmembrane region M634_08150 PF00005 ABC transporter M634_08155 PF07992 Pyridine nucleotide-disulphide oxidoreductase M634_08165 PF00266 Aminotransferase class-V M634_08175 PF00990 Diguanylate cyclase, GGDEF domain M634_08175 PF00072 Response regulator receiver domain M634_08180 PF00939 Sodium:sulfate symporter transmembrane region M634_08185 PF02698 DUF218 domain M634_08190 PF03949 Malic enzyme, NAD binding domain M634_08190 PF00390 Malic enzyme, N-terminal domain M634_08195 PF08482 ATP-dependent helicase C-terminal M634_08195 PF00271 Helicase conserved C-terminal domain M634_08195 PF04408 Helicase associated domain (HA2) M634_08195 PF00270 DEAD/DEAH box helicase M634_08200 PF02253 Phospholipase A1 M634_08210 PF16655 PhoD-like phosphatase, N-terminal domain M634_08210 PF09423 PhoD-like phosphatase M634_08215 PF01259 SAICAR synthetase M634_08235 PF00691 OmpA family M634_08235 PF05736 OprF membrane domain M634_08250 PF01565 FAD binding domain M634_08250 PF13183 4Fe-4S dicluster domain M634_08250 PF02913 FAD linked oxidases, C-terminal domain M634_08255 PF04191 Phospholipid methyltransferase M634_08265 PF00665 Integrase core domain M634_08265 PF13276 HTH-like domain M634_08265 PF13333 Integrase core domain M634_08275 PF00221 Aromatic amino acid lyase M634_08280 PF17391 Urocanase N-terminal domain M634_08280 PF17392 Urocanase C-terminal domain M634_08280 PF01175 Urocanase Rossmann-like domain M634_08285 PF00491 Arginase family M634_08290 PF01979 Amidohydrolase family M634_08295 PF00392 Bacterial regulatory proteins, gntR family M634_08295 PF07702 UTRA domain M634_08310 PF03129 Anticodon binding domain M634_08310 PF02824 TGS domain M634_08310 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M634_08310 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M634_08315 PF05198 Translation initiation factor IF-3, N-terminal domain M634_08315 PF00707 Translation initiation factor IF-3, C-terminal domain M634_08320 PF01632 Ribosomal protein L35 M634_08325 PF00453 Ribosomal protein L20 M634_08330 PF01906 Putative heavy-metal-binding M634_08360 PF17158 Membrane-associated sensor, integral membrane domain M634_08360 PF00990 Diguanylate cyclase, GGDEF domain M634_08365 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain M634_08365 PF01409 tRNA synthetases class II core domain (F) M634_08370 PF03484 tRNA synthetase B5 domain M634_08370 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain M634_08370 PF01588 Putative tRNA binding domain M634_08370 PF03147 Ferredoxin-fold anticodon binding domain M634_08370 PF03483 B3/4 domain M634_08380 PF00216 Bacterial DNA-binding protein M634_08390 PF05724 Thiopurine S-methyltransferase (TPMT) M634_08395 PF02222 ATP-grasp domain M634_08400 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region M634_08400 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M634_08405 PF04172 LrgB-like family M634_08410 PF03788 LrgA family M634_08415 PF08411 Exonuclease C-terminal M634_08415 PF00929 Exonuclease M634_08425 PF13460 NAD(P)H-binding M634_08430 PF02277 Phosphoribosyltransferase M634_08435 PF02654 Cobalamin-5-phosphate synthase M634_08440 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase M634_08460 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family M634_08465 PF01032 FecCD transport family M634_08470 PF00005 ABC transporter M634_08490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_08490 PF03466 LysR substrate binding domain M634_08510 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase M634_08515 PF16363 GDP-mannose 4,6 dehydratase M634_08520 PF04991 LicD family M634_08525 PF01863 Protein of unknown function DUF45 M634_08530 PF05971 RNA methyltransferase M634_08550 PF00392 Bacterial regulatory proteins, gntR family M634_08555 PF00171 Aldehyde dehydrogenase family M634_08560 PF05544 Proline racemase M634_08565 PF01593 Flavin containing amine oxidoreductase M634_08575 PF02423 Ornithine cyclodeaminase/mu-crystallin family M634_08580 PF00701 Dihydrodipicolinate synthetase family M634_08585 PF08402 TOBE domain M634_08585 PF00005 ABC transporter M634_08590 PF00528 Binding-protein-dependent transport system inner membrane component M634_08595 PF00528 Binding-protein-dependent transport system inner membrane component M634_08605 PF08453 Peptidase family M9 N-terminal M634_08605 PF01752 Collagenase M634_08620 PF12911 N-terminal TM domain of oligopeptide transport permease C M634_08620 PF00528 Binding-protein-dependent transport system inner membrane component M634_08625 PF00528 Binding-protein-dependent transport system inner membrane component M634_08630 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M634_08635 PF01546 Peptidase family M20/M25/M40 M634_08635 PF07687 Peptidase dimerisation domain M634_08645 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M634_08650 PF04209 homogentisate 1,2-dioxygenase M634_08660 PF14497 Glutathione S-transferase, C-terminal domain M634_08660 PF02798 Glutathione S-transferase, N-terminal domain M634_08685 PF01527 Transposase M634_08705 PF08461 Ribonuclease R winged-helix domain M634_08705 PF08206 Ribonuclease B OB domain M634_08705 PF00773 RNB domain M634_08705 PF00575 S1 RNA binding domain M634_08705 PF17876 Cold shock domain M634_08710 PF00313 'Cold-shock' DNA-binding domain M634_08720 PF13333 Integrase core domain M634_08720 PF13276 HTH-like domain M634_08720 PF00665 Integrase core domain M634_08725 PF01527 Transposase M634_08730 PF00300 Histidine phosphatase superfamily (branch 1) M634_08740 PF00583 Acetyltransferase (GNAT) family M634_08745 PF00939 Sodium:sulfate symporter transmembrane region M634_08750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_08750 PF00497 Bacterial extracellular solute-binding proteins, family 3 M634_08750 PF00512 His Kinase A (phospho-acceptor) domain M634_08755 PF00072 Response regulator receiver domain M634_08755 PF02954 Bacterial regulatory protein, Fis family M634_08755 PF00158 Sigma-54 interaction domain M634_08760 PF00990 Diguanylate cyclase, GGDEF domain M634_08760 PF03707 Bacterial signalling protein N terminal repeat M634_08760 PF00563 EAL domain M634_08765 PF11871 Domain of unknown function (DUF3391) M634_08765 PF01966 HD domain M634_08770 PF01810 LysE type translocator M634_08775 PF11230 Protein of unknown function (DUF3029) M634_08780 PF04055 Radical SAM superfamily M634_08790 PF03741 Integral membrane protein TerC family M634_08800 PF00884 Sulfatase M634_08805 PF08521 Two-component sensor kinase N-terminal M634_08805 PF00512 His Kinase A (phospho-acceptor) domain M634_08805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_08810 PF00486 Transcriptional regulatory protein, C terminal M634_08810 PF00072 Response regulator receiver domain M634_08830 PF00501 AMP-binding enzyme M634_08840 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M634_08845 PF00528 Binding-protein-dependent transport system inner membrane component M634_08850 PF00005 ABC transporter M634_08850 PF00571 CBS domain M634_08865 PF02028 BCCT, betaine/carnitine/choline family transporter M634_08870 PF00583 Acetyltransferase (GNAT) family M634_08875 PF00202 Aminotransferase class-III M634_08880 PF06339 Ectoine synthase M634_08885 PF13840 ACT domain M634_08885 PF00696 Amino acid kinase family M634_08900 PF00034 Cytochrome c M634_08900 PF03150 Di-haem cytochrome c peroxidase M634_08920 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M634_08935 PF00989 PAS fold M634_08935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_08935 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain M634_08935 PF17203 Single cache domain 3 M634_08940 PF00072 Response regulator receiver domain M634_08940 PF12431 Transcriptional regulator M634_08945 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain M634_08945 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain M634_08950 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase M634_08955 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain M634_08955 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M634_08970 PF01590 GAF domain M634_08970 PF02954 Bacterial regulatory protein, Fis family M634_08970 PF00158 Sigma-54 interaction domain M634_08975 PF00171 Aldehyde dehydrogenase family M634_08995 PF12833 Helix-turn-helix domain M634_09015 PF16693 Inner membrane component of T3SS, periplasmic domain M634_09015 PF16697 Inner membrane component of T3SS, cytoplasmic domain M634_09025 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF M634_09030 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) M634_09040 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI M634_09050 PF02108 Flagellar assembly protein FliH M634_09060 PF02661 Fic/DOC family M634_09090 PF01312 FlhB HrpN YscU SpaS Family M634_09095 PF01311 Bacterial export proteins, family 1 M634_09100 PF01313 Bacterial export proteins, family 3 M634_09105 PF00813 FliP family M634_09110 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M634_09125 PF18269 T3SS EscN ATPase C-terminal domain M634_09125 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M634_09125 PF02874 ATP synthase alpha/beta family, beta-barrel domain M634_09130 PF07201 HrpJ-like domain M634_09135 PF09059 TyeA M634_09155 PF00771 FHIPEP family M634_09160 PF09621 Type III secretion system regulator (LcrR) M634_09165 PF07216 LcrG protein M634_09170 PF04792 V antigen (LcrV) protein M634_09175 PF07720 Tetratricopeptide repeat M634_09185 PF05844 YopD protein M634_09195 PF01925 Sulfite exporter TauE/SafE M634_09200 PF01970 Tripartite tricarboxylate transporter TctA family M634_09230 PF00285 Citrate synthase, C-terminal domain M634_09235 PF00694 Aconitase C-terminal domain M634_09235 PF00330 Aconitase family (aconitate hydratase) M634_09240 PF04303 PrpF protein M634_09245 PF13193 AMP-binding enzyme C-terminal domain M634_09245 PF00501 AMP-binding enzyme M634_09245 PF16177 Acetyl-coenzyme A synthetase N-terminus M634_09255 PF00089 Trypsin M634_09270 PF04055 Radical SAM superfamily M634_09275 PF06508 Queuosine biosynthesis protein QueC M634_09280 PF17158 Membrane-associated sensor, integral membrane domain M634_09280 PF00990 Diguanylate cyclase, GGDEF domain M634_09290 PF00691 OmpA family M634_09290 PF05736 OprF membrane domain M634_09305 PF05736 OprF membrane domain M634_09305 PF00691 OmpA family M634_09320 PF17785 PUA-like domain M634_09320 PF10672 S-adenosylmethionine-dependent methyltransferase M634_09325 PF00672 HAMP domain M634_09325 PF02743 Cache domain M634_09325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M634_09330 PF00708 Acylphosphatase M634_09335 PF04358 DsrC like protein M634_09345 PF01027 Inhibitor of apoptosis-promoting Bax1 M634_09350 PF00005 ABC transporter M634_09355 PF00528 Binding-protein-dependent transport system inner membrane component M634_09360 PF00528 Binding-protein-dependent transport system inner membrane component M634_09365 PF00497 Bacterial extracellular solute-binding proteins, family 3 M634_09370 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M634_09370 PF14824 Sirohaem biosynthesis protein central M634_09370 PF10414 Sirohaem synthase dimerisation region M634_09375 PF04461 Protein of unknown function (DUF520) M634_09380 PF00793 DAHP synthetase I family M634_09400 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF M634_09400 PF01189 16S rRNA methyltransferase RsmB/F M634_09400 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF M634_09405 PF02470 MlaD protein M634_09410 PF04403 Paraquat-inducible protein A M634_09415 PF00005 ABC transporter M634_09415 PF00664 ABC transporter transmembrane region M634_09420 PF13185 GAF domain M634_09425 PF04352 ProQ/FINO family M634_09425 PF17516 ProQ C-terminal domain M634_09430 PF03572 Peptidase family S41 M634_09430 PF11818 C-terminal domain of tail specific protease (DUF3340) M634_09430 PF00595 PDZ domain M634_09430 PF17804 Tail specific protease N-terminal domain M634_09440 PF01433 Peptidase family M1 domain M634_09440 PF11940 Domain of unknown function (DUF3458) Ig-like fold M634_09440 PF17432 Domain of unknown function (DUF3458_C) ARM repeats M634_09445 PF05088 Bacterial NAD-glutamate dehydrogenase M634_09450 PF01180 Dihydroorotate dehydrogenase M634_09455 PF07126 Cell-division protein ZapC M634_09460 PF01170 Putative RNA methylase family UPF0020 M634_09460 PF02926 THUMP domain M634_09460 PF10672 S-adenosylmethionine-dependent methyltransferase M634_09480 PF04957 Ribosome modulation factor M634_09485 PF07977 FabA-like domain M634_09490 PF05362 Lon protease (S16) C-terminal proteolytic domain M634_09490 PF13654 AAA domain M634_09495 PF06303 MatP N-terminal domain M634_09495 PF17414 MatP C-terminal ribbon-helix-helix domain M634_09565 PF00072 Response regulator receiver domain M634_09565 PF09308 LuxQ, periplasmic M634_09565 PF00512 His Kinase A (phospho-acceptor) domain M634_09565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_09580 PF00115 Cytochrome C and Quinol oxidase polypeptide I M634_09595 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP M634_09595 PF13442 Cytochrome C oxidase, cbb3-type, subunit III M634_09605 PF00403 Heavy-metal-associated domain M634_09620 PF13545 Crp-like helix-turn-helix domain M634_09620 PF00027 Cyclic nucleotide-binding domain M634_09625 PF00582 Universal stress protein family M634_09630 PF01171 PP-loop family M634_09650 PF08402 TOBE domain M634_09650 PF00005 ABC transporter M634_09655 PF00528 Binding-protein-dependent transport system inner membrane component M634_09660 PF00528 Binding-protein-dependent transport system inner membrane component M634_09665 PF13416 Bacterial extracellular solute-binding protein M634_09670 PF13416 Bacterial extracellular solute-binding protein M634_09675 PF02146 Sir2 family M634_09685 PF13276 HTH-like domain M634_09685 PF00665 Integrase core domain M634_09685 PF13333 Integrase core domain M634_09695 PF00909 Ammonium Transporter Family M634_09760 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 M634_09760 PF13542 Helix-turn-helix domain of transposase family ISL3 M634_09760 PF01610 Transposase M634_09775 PF13247 4Fe-4S dicluster domain M634_09780 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M634_09780 PF00384 Molybdopterin oxidoreductase M634_09780 PF01568 Molydopterin dinucleotide binding domain M634_09790 PF02613 Nitrate reductase delta subunit M634_09810 PF02634 FdhD/NarQ family M634_09820 PF12848 ABC transporter M634_09820 PF00005 ABC transporter M634_09825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_09825 PF00512 His Kinase A (phospho-acceptor) domain M634_09830 PF00072 Response regulator receiver domain M634_09830 PF00158 Sigma-54 interaction domain M634_09830 PF02954 Bacterial regulatory protein, Fis family M634_09835 PF12849 PBP superfamily domain M634_09840 PF00528 Binding-protein-dependent transport system inner membrane component M634_09845 PF08402 TOBE domain M634_09845 PF00005 ABC transporter M634_09850 PF12804 MobA-like NTP transferase domain M634_09855 PF00994 Probable molybdopterin binding domain M634_09855 PF03453 MoeA N-terminal region (domain I and II) M634_09855 PF03454 MoeA C-terminal region (domain IV) M634_09865 PF00480 ROK family M634_09905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M634_09905 PF00672 HAMP domain M634_09905 PF02743 Cache domain M634_09910 PF00877 NlpC/P60 family M634_09920 PF05230 MASE2 domain M634_09920 PF00990 Diguanylate cyclase, GGDEF domain M634_09925 PF01339 CheB methylesterase M634_09925 PF00072 Response regulator receiver domain M634_09940 PF00677 Lumazine binding domain M634_09945 PF01554 MatE M634_09955 PF14743 DNA ligase OB-like domain M634_09955 PF01068 ATP dependent DNA ligase domain M634_09960 PF01740 STAS domain M634_09970 PF02563 Polysaccharide biosynthesis/export protein M634_09970 PF10531 SLBB domain M634_09985 PF02954 Bacterial regulatory protein, Fis family M634_09985 PF00158 Sigma-54 interaction domain M634_09985 PF00072 Response regulator receiver domain M634_09990 PF13439 Glycosyltransferase Family 4 M634_09990 PF00534 Glycosyl transferases group 1 M634_09995 PF13439 Glycosyltransferase Family 4 M634_09995 PF00534 Glycosyl transferases group 1 M634_10025 PF00534 Glycosyl transferases group 1 M634_10025 PF13439 Glycosyltransferase Family 4 M634_10030 PF00535 Glycosyl transferase family 2 M634_10035 PF02397 Bacterial sugar transferase M634_10050 PF02028 BCCT, betaine/carnitine/choline family transporter M634_10065 PF04408 Helicase associated domain (HA2) M634_10065 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold M634_10065 PF00270 DEAD/DEAH box helicase M634_10065 PF11898 Domain of unknown function (DUF3418) M634_10065 PF00271 Helicase conserved C-terminal domain M634_10070 PF02525 Flavodoxin-like fold M634_10080 PF02613 Nitrate reductase delta subunit M634_10085 PF04976 DMSO reductase anchor subunit (DmsC) M634_10090 PF13247 4Fe-4S dicluster domain M634_10090 PF12800 4Fe-4S binding domain M634_10095 PF00384 Molybdopterin oxidoreductase M634_10095 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M634_10095 PF01568 Molydopterin dinucleotide binding domain M634_10125 PF00990 Diguanylate cyclase, GGDEF domain M634_10125 PF17158 Membrane-associated sensor, integral membrane domain M634_10135 PF00012 Hsp70 protein M634_10140 PF00012 Hsp70 protein M634_10165 PF00664 ABC transporter transmembrane region M634_10165 PF00005 ABC transporter M634_10170 PF00005 ABC transporter M634_10170 PF00664 ABC transporter transmembrane region M634_10190 PF03222 Tryptophan/tyrosine permease family M634_10195 PF00465 Iron-containing alcohol dehydrogenase M634_10200 PF01966 HD domain M634_10225 PF01235 Sodium:alanine symporter family M634_10235 PF01810 LysE type translocator M634_10240 PF02074 Carboxypeptidase Taq (M32) metallopeptidase M634_10245 PF03279 Bacterial lipid A biosynthesis acyltransferase M634_10255 PF13520 Amino acid permease M634_10265 PF04204 Homoserine O-succinyltransferase M634_10280 PF03707 Bacterial signalling protein N terminal repeat M634_10280 PF00990 Diguanylate cyclase, GGDEF domain M634_10280 PF00563 EAL domain M634_10285 PF01627 Hpt domain M634_10285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_10285 PF00672 HAMP domain M634_10285 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M634_10285 PF00072 Response regulator receiver domain M634_10285 PF00512 His Kinase A (phospho-acceptor) domain M634_10300 PF12464 Maltose acetyltransferase M634_10300 PF00132 Bacterial transferase hexapeptide (six repeats) M634_10310 PF01928 CYTH domain M634_10320 PF04237 YjbR M634_10325 PF01047 MarR family M634_10335 PF12833 Helix-turn-helix domain M634_10340 PF02272 DHHA1 domain M634_10340 PF01411 tRNA synthetases class II (A) M634_10340 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M634_10355 PF00196 Bacterial regulatory proteins, luxR family M634_10355 PF00563 EAL domain M634_10360 PF02833 DHHA2 domain M634_10360 PF01368 DHH family M634_10365 PF00202 Aminotransferase class-III M634_10370 PF00171 Aldehyde dehydrogenase family M634_10375 PF04371 Porphyromonas-type peptidyl-arginine deiminase M634_10380 PF00795 Carbon-nitrogen hydrolase M634_10385 PF01266 FAD dependent oxidoreductase M634_10390 PF00171 Aldehyde dehydrogenase family M634_10395 PF07883 Cupin domain M634_10395 PF01381 Helix-turn-helix M634_10400 PF07722 Peptidase C26 M634_10405 PF00120 Glutamine synthetase, catalytic domain M634_10410 PF03553 Na+/H+ antiporter family M634_10425 PF01527 Transposase M634_10440 PF01321 Creatinase/Prolidase N-terminal domain M634_10440 PF00557 Metallopeptidase family M24 M634_10450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_10450 PF03466 LysR substrate binding domain M634_10465 PF08543 Phosphomethylpyrimidine kinase M634_10470 PF00155 Aminotransferase class I and II M634_10475 PF02080 TrkA-C domain M634_10475 PF06826 Predicted Permease Membrane Region M634_10490 PF13533 Biotin-lipoyl like M634_10510 PF00135 Carboxylesterase family M634_10515 PF13091 PLD-like domain M634_10520 PF17243 POTRA domain TamA domain 1 M634_10520 PF01103 Surface antigen M634_10525 PF01527 Transposase M634_10530 PF13333 Integrase core domain M634_10530 PF13276 HTH-like domain M634_10530 PF00665 Integrase core domain M634_10550 PF05016 ParE toxin of type II toxin-antitoxin system, parDE M634_10645 PF04229 GrpB protein M634_10665 PF01527 Transposase M634_10670 PF13333 Integrase core domain M634_10670 PF13276 HTH-like domain M634_10670 PF00665 Integrase core domain M634_10715 PF13333 Integrase core domain M634_10715 PF00665 Integrase core domain M634_10715 PF13276 HTH-like domain M634_10720 PF01527 Transposase M634_10750 PF00873 AcrB/AcrD/AcrF family M634_10755 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M634_10770 PF04994 TfoX C-terminal domain M634_10770 PF04993 TfoX N-terminal domain M634_10790 PF00589 Phage integrase family M634_10935 PF02016 LD-carboxypeptidase N-terminal domain M634_10935 PF17676 LD-carboxypeptidase C-terminal domain M634_10955 PF01527 Transposase M634_10960 PF13276 HTH-like domain M634_10960 PF13333 Integrase core domain M634_10960 PF00665 Integrase core domain M634_11030 PF01555 DNA methylase M634_11030 PF18755 Restriction Enzyme Adenine Methylase Associated M634_11040 PF09905 DNA-binding protein VF530 M634_11110 PF08378 Nuclease-related domain M634_11220 PF00589 Phage integrase family M634_11220 PF13495 Phage integrase, N-terminal SAM-like domain M634_11235 PF13302 Acetyltransferase (GNAT) domain M634_11240 PF18024 Helix-turn-helix domain M634_11240 PF00158 Sigma-54 interaction domain M634_11245 PF05128 Domain of unknown function (DUF697) M634_11250 PF04317 YcjX-like family, DUF463 M634_11265 PF04715 Anthranilate synthase component I, N terminal region M634_11265 PF00425 chorismate binding enzyme M634_11270 PF00512 His Kinase A (phospho-acceptor) domain M634_11270 PF00072 Response regulator receiver domain M634_11270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_11270 PF09308 LuxQ, periplasmic M634_11280 PF00293 NUDIX domain M634_11285 PF03222 Tryptophan/tyrosine permease family M634_11290 PF03315 Serine dehydratase beta chain M634_11290 PF03313 Serine dehydratase alpha chain M634_11295 PF00563 EAL domain M634_11295 PF04940 Sensors of blue-light using FAD M634_11305 PF01242 6-pyruvoyl tetrahydropterin synthase M634_11315 PF09669 Phage regulatory protein Rha (Phage_pRha) M634_11315 PF10549 ORF11CD3 domain M634_11325 PF13274 Protein of unknown function (DUF4065) M634_11340 PF09669 Phage regulatory protein Rha (Phage_pRha) M634_11340 PF10549 ORF11CD3 domain M634_11610 PF02092 Glycyl-tRNA synthetase beta subunit M634_11645 PF10065 Uncharacterized conserved protein (DUF2303) M634_11655 PF05063 MT-A70 M634_11670 PF00589 Phage integrase family M634_11670 PF13356 Arm DNA-binding domain M634_11680 PF02743 Cache domain M634_11680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M634_11680 PF00672 HAMP domain M634_11685 PF00152 tRNA synthetases class II (D, K and N) M634_11685 PF01336 OB-fold nucleic acid binding domain M634_11695 PF00155 Aminotransferase class I and II M634_11695 PF00392 Bacterial regulatory proteins, gntR family M634_11710 PF00155 Aminotransferase class I and II M634_11730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M634_11730 PF00672 HAMP domain M634_11735 PF02028 BCCT, betaine/carnitine/choline family transporter M634_11740 PF01047 MarR family M634_11745 PF00196 Bacterial regulatory proteins, luxR family M634_11745 PF00072 Response regulator receiver domain M634_11750 PF17200 Single Cache domain 2 M634_11750 PF07730 Histidine kinase M634_11755 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component M634_11765 PF03480 Bacterial extracellular solute-binding protein, family 7 M634_11780 PF00753 Metallo-beta-lactamase superfamily M634_11785 PF05951 Bacterial protein of unknown function (DUF882) M634_11790 PF03734 L,D-transpeptidase catalytic domain M634_11790 PF01471 Putative peptidoglycan binding domain M634_11815 PF00925 GTP cyclohydrolase II M634_11825 PF03918 Cytochrome C biogenesis protein M634_11830 PF08534 Redoxin M634_11835 PF01578 Cytochrome C assembly protein M634_11835 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal M634_11840 PF03916 Polysulphide reductase, NrfD M634_11845 PF13247 4Fe-4S dicluster domain M634_11855 PF02335 Cytochrome c552 M634_11870 PF03989 DNA gyrase C-terminal domain, beta-propeller M634_11870 PF00521 DNA gyrase/topoisomerase IV, subunit A M634_11880 PF00317 Ribonucleotide reductase, all-alpha domain M634_11880 PF02867 Ribonucleotide reductase, barrel domain M634_11880 PF03477 ATP cone domain M634_11885 PF00268 Ribonucleotide reductase, small chain M634_11895 PF00994 Probable molybdopterin binding domain M634_11910 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain M634_11915 PF03435 Saccharopine dehydrogenase NADP binding domain M634_11915 PF16653 Saccharopine dehydrogenase C-terminal domain M634_11920 PF00202 Aminotransferase class-III M634_11945 PF01066 CDP-alcohol phosphatidyltransferase M634_11950 PF01541 GIY-YIG catalytic domain M634_11950 PF08459 UvrC Helix-hairpin-helix N-terminal M634_11950 PF02151 UvrB/uvrC motif M634_11955 PF00072 Response regulator receiver domain M634_11955 PF00196 Bacterial regulatory proteins, luxR family M634_11960 PF00136 DNA polymerase family B M634_11960 PF03104 DNA polymerase family B, exonuclease domain M634_11970 PF01132 Elongation factor P (EF-P) OB domain M634_11970 PF09285 Elongation factor P, C-terminal M634_11970 PF08207 Elongation factor P (EF-P) KOW-like domain M634_11975 PF04269 Protein of unknown function, DUF440 M634_11980 PF00849 RNA pseudouridylate synthase M634_11980 PF01479 S4 domain M634_11990 PF01300 Telomere recombination M634_11995 PF02811 PHP domain M634_12000 PF08056 Tryptophan operon leader peptide M634_12005 PF00425 chorismate binding enzyme M634_12005 PF04715 Anthranilate synthase component I, N terminal region M634_12010 PF00117 Glutamine amidotransferase class-I M634_12015 PF00591 Glycosyl transferase family, a/b domain M634_12015 PF02885 Glycosyl transferase family, helical bundle domain M634_12020 PF00218 Indole-3-glycerol phosphate synthase M634_12020 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase M634_12025 PF00291 Pyridoxal-phosphate dependent enzyme M634_12030 PF00290 Tryptophan synthase alpha chain M634_12035 PF00027 Cyclic nucleotide-binding domain M634_12035 PF13545 Crp-like helix-turn-helix domain M634_12040 PF13193 AMP-binding enzyme C-terminal domain M634_12040 PF00501 AMP-binding enzyme M634_12045 PF00375 Sodium:dicarboxylate symporter family M634_12050 PF17327 Acyl homoserine lactone synthase M634_12055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_12055 PF00072 Response regulator receiver domain M634_12065 PF04279 Intracellular septation protein A M634_12070 PF03061 Thioesterase superfamily M634_12075 PF03795 YCII-related domain M634_12085 PF08267 Cobalamin-independent synthase, N-terminal domain M634_12085 PF01717 Cobalamin-independent synthase, Catalytic domain M634_12095 PF03466 LysR substrate binding domain M634_12095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_12110 PF00360 Phytochrome region M634_12110 PF00990 Diguanylate cyclase, GGDEF domain M634_12110 PF01590 GAF domain M634_12110 PF00563 EAL domain M634_12115 PF08497 Radical SAM N-terminal M634_12115 PF11842 Domain of unknown function (DUF3362) M634_12115 PF04055 Radical SAM superfamily M634_12120 PF00672 HAMP domain M634_12120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M634_12125 PF00072 Response regulator receiver domain M634_12125 PF00486 Transcriptional regulatory protein, C terminal M634_12130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_12130 PF00512 His Kinase A (phospho-acceptor) domain M634_12130 PF00672 HAMP domain M634_12150 PF03466 LysR substrate binding domain M634_12150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_12155 PF00529 HlyD membrane-fusion protein of T1SS M634_12155 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M634_12165 PF08267 Cobalamin-independent synthase, N-terminal domain M634_12165 PF01717 Cobalamin-independent synthase, Catalytic domain M634_12175 PF02311 AraC-like ligand binding domain M634_12175 PF12833 Helix-turn-helix domain M634_12180 PF00857 Isochorismatase family M634_12185 PF00005 ABC transporter M634_12185 PF02687 FtsX-like permease family M634_12185 PF12704 MacB-like periplasmic core domain M634_12190 PF00005 ABC transporter M634_12190 PF12704 MacB-like periplasmic core domain M634_12190 PF02687 FtsX-like permease family M634_12195 PF12704 MacB-like periplasmic core domain M634_12195 PF02687 FtsX-like permease family M634_12195 PF00005 ABC transporter M634_12205 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M634_12225 PF00085 Thioredoxin M634_12230 PF11412 Disulphide bond corrector protein DsbC M634_12230 PF02683 Cytochrome C biogenesis protein transmembrane region M634_12240 PF03466 LysR substrate binding domain M634_12240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_12245 PF00072 Response regulator receiver domain M634_12245 PF00196 Bacterial regulatory proteins, luxR family M634_12250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_12250 PF00512 His Kinase A (phospho-acceptor) domain M634_12255 PF13247 4Fe-4S dicluster domain M634_12260 PF03916 Polysulphide reductase, NrfD M634_12265 PF01568 Molydopterin dinucleotide binding domain M634_12265 PF00384 Molybdopterin oxidoreductase M634_12265 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M634_12270 PF00034 Cytochrome c M634_12275 PF13442 Cytochrome C oxidase, cbb3-type, subunit III M634_12280 PF04403 Paraquat-inducible protein A M634_12285 PF02470 MlaD protein M634_12295 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase M634_12305 PF00535 Glycosyl transferase family 2 M634_12310 PF01370 NAD dependent epimerase/dehydratase family M634_12320 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M634_12325 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family M634_12330 PF18073 Rubredoxin metal binding domain M634_12335 PF06305 Lipopolysaccharide assembly protein A domain M634_12340 PF00216 Bacterial DNA-binding protein M634_12345 PF00575 S1 RNA binding domain M634_12350 PF02224 Cytidylate kinase M634_12355 PF08496 Peptidase family S49 N-terminal M634_12355 PF01343 Peptidase family S49 M634_12360 PF00106 short chain dehydrogenase M634_12375 PF07733 Bacterial DNA polymerase III alpha NTPase domain M634_12375 PF02811 PHP domain M634_12375 PF01336 OB-fold nucleic acid binding domain M634_12375 PF14579 Helix-hairpin-helix motif M634_12375 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M634_12380 PF01584 CheW-like domain M634_12380 PF00072 Response regulator receiver domain M634_12385 PF00480 ROK family M634_12390 PF02887 Pyruvate kinase, alpha/beta domain M634_12390 PF00224 Pyruvate kinase, barrel domain M634_12395 PF01734 Patatin-like phospholipase M634_12410 PF00209 Sodium:neurotransmitter symporter family M634_12430 PF02378 Phosphotransferase system, EIIC M634_12430 PF00367 phosphotransferase system, EIIB M634_12435 PF01026 TatD related DNase M634_12440 PF09115 DNA polymerase III, delta subunit, C terminal M634_12445 PF02223 Thymidylate kinase M634_12450 PF02618 YceG-like family M634_12455 PF01063 Amino-transferase class IV M634_12460 PF00109 Beta-ketoacyl synthase, N-terminal domain M634_12460 PF02801 Beta-ketoacyl synthase, C-terminal domain M634_12465 PF00550 Phosphopantetheine attachment site M634_12475 PF00698 Acyl transferase domain M634_12480 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M634_12480 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M634_12485 PF02504 Fatty acid synthesis protein M634_12490 PF01783 Ribosomal L32p protein family M634_12495 PF02620 Large ribosomal RNA subunit accumulation protein YceD M634_12500 PF02545 Maf-like protein M634_12505 PF01479 S4 domain M634_12505 PF00849 RNA pseudouridylate synthase M634_12510 PF12111 Polyribonucleotide phosphorylase C terminal M634_12510 PF00575 S1 RNA binding domain M634_12510 PF10150 Ribonuclease E/G family M634_12515 PF01740 STAS domain M634_12515 PF00916 Sulfate permease family M634_12520 PF01451 Low molecular weight phosphotyrosine protein phosphatase M634_12525 PF12557 Cob(I)alamin adenosyltransferase N terminal M634_12525 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP M634_12535 PF00485 Phosphoribulokinase / Uridine kinase family M634_12540 PF10609 NUBPL iron-transfer P-loop NTPase M634_12545 PF01588 Putative tRNA binding domain M634_12545 PF09334 tRNA synthetases class I (M) M634_12555 PF07840 FadR C-terminal domain M634_12555 PF00392 Bacterial regulatory proteins, gntR family M634_12560 PF06450 Bacterial Na+/H+ antiporter B (NhaB) M634_12565 PF02600 Disulfide bond formation protein DsbB M634_12570 PF02810 SEC-C motif M634_12570 PF03695 Uncharacterised protein family (UPF0149) M634_12575 PF01207 Dihydrouridine synthase (Dus) M634_12580 PF00072 Response regulator receiver domain M634_12580 PF00990 Diguanylate cyclase, GGDEF domain M634_12585 PF00128 Alpha amylase, catalytic domain M634_12585 PF02903 Alpha amylase, N-terminal ig-like domain M634_12590 PF00005 ABC transporter M634_12595 PF02653 Branched-chain amino acid transport system / permease component M634_12605 PF04217 Protein of unknown function, DUF412 M634_12610 PF00871 Acetokinase family M634_12615 PF01515 Phosphate acetyl/butaryl transferase M634_12615 PF07085 DRTGG domain M634_12620 PF13194 Domain of unknown function (DUF4010) M634_12630 PF13409 Glutathione S-transferase, N-terminal domain M634_12640 PF12911 N-terminal TM domain of oligopeptide transport permease C M634_12640 PF00528 Binding-protein-dependent transport system inner membrane component M634_12645 PF00528 Binding-protein-dependent transport system inner membrane component M634_12650 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M634_12655 PF02391 MoaE protein M634_12660 PF02597 ThiS family M634_12665 PF01967 MoaC family M634_12670 PF00994 Probable molybdopterin binding domain M634_12675 PF04055 Radical SAM superfamily M634_12675 PF06463 Molybdenum Cofactor Synthesis C M634_12680 PF01933 Uncharacterised protein family UPF0052 M634_12685 PF01627 Hpt domain M634_12690 PF02954 Bacterial regulatory protein, Fis family M634_12690 PF00072 Response regulator receiver domain M634_12690 PF00158 Sigma-54 interaction domain M634_12695 PF04851 Type III restriction enzyme, res subunit M634_12695 PF02151 UvrB/uvrC motif M634_12695 PF12344 Ultra-violet resistance protein B M634_12695 PF17757 UvrB interaction domain M634_12695 PF00271 Helicase conserved C-terminal domain M634_12705 PF02508 Rnf-Nqr subunit, membrane protein M634_12710 PF04060 Putative Fe-S cluster M634_12715 PF10531 SLBB domain M634_12715 PF12838 4Fe-4S dicluster domain M634_12715 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit M634_12715 PF13375 RnfC Barrel sandwich hybrid domain M634_12720 PF03116 NQR2, RnfD, RnfE family M634_12725 PF04205 FMN-binding domain M634_12730 PF02508 Rnf-Nqr subunit, membrane protein M634_12735 PF00633 Helix-hairpin-helix motif M634_12735 PF10576 Iron-sulfur binding domain of endonuclease III M634_12735 PF00730 HhH-GPD superfamily base excision DNA repair protein M634_12790 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M634_12810 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M634_12815 PF10952 Protein of unknown function (DUF2753) M634_12820 PF00691 OmpA family M634_12820 PF18393 MotY N-terminal domain M634_12825 PF00929 Exonuclease M634_12830 PF13726 Na+-H+ antiporter family M634_12830 PF03553 Na+/H+ antiporter family M634_12840 PF00462 Glutaredoxin M634_12845 PF02777 Iron/manganese superoxide dismutases, C-terminal domain M634_12845 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain M634_12860 PF00171 Aldehyde dehydrogenase family M634_12860 PF00465 Iron-containing alcohol dehydrogenase M634_12865 PF01914 MarC family integral membrane protein M634_12870 PF00520 Ion transport protein M634_12870 PF00027 Cyclic nucleotide-binding domain M634_12875 PF02774 Semialdehyde dehydrogenase, dimerisation domain M634_12875 PF01118 Semialdehyde dehydrogenase, NAD binding domain M634_12880 PF03553 Na+/H+ antiporter family M634_12895 PF04245 37-kD nucleoid-associated bacterial protein M634_12900 PF07208 Protein of unknown function (DUF1414) M634_12905 PF00884 Sulfatase M634_12905 PF11893 Domain of unknown function (DUF3413) M634_12915 PF00850 Histone deacetylase domain M634_12920 PF00106 short chain dehydrogenase M634_12930 PF01131 DNA topoisomerase M634_12930 PF01751 Toprim domain M634_12935 PF00881 Nitroreductase family M634_12940 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M634_12940 PF07992 Pyridine nucleotide-disulphide oxidoreductase M634_12945 PF01343 Peptidase family S49 M634_12950 PF00710 Asparaginase, N-terminal M634_12950 PF17763 Glutaminase/Asparaginase C-terminal domain M634_12955 PF07023 Protein of unknown function (DUF1315) M634_12965 PF01641 SelR domain M634_12970 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M634_12970 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M634_12975 PF01263 Aldose 1-epimerase M634_12980 PF00672 HAMP domain M634_12980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M634_12980 PF02743 Cache domain M634_12985 PF13847 Methyltransferase domain M634_13000 PF00245 Alkaline phosphatase M634_13010 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M634_13015 PF03992 Antibiotic biosynthesis monooxygenase M634_13020 PF05552 Conserved TM helix M634_13020 PF00924 Mechanosensitive ion channel M634_13025 PF01757 Acyltransferase family M634_13105 PF01258 Prokaryotic dksA/traR C4-type zinc finger M634_13180 PF05840 Bacteriophage replication gene A protein (GPA) M634_13235 PF00589 Phage integrase family M634_13235 PF02899 Phage integrase, N-terminal SAM-like domain M634_13245 PF03692 Putative zinc- or iron-chelating domain M634_13250 PF04226 Transglycosylase associated protein M634_13255 PF03692 Putative zinc- or iron-chelating domain M634_13265 PF03313 Serine dehydratase alpha chain M634_13270 PF01042 Endoribonuclease L-PSP M634_13280 PF00230 Major intrinsic protein M634_13285 PF02132 RecR protein M634_13285 PF13662 Toprim domain M634_13290 PF02575 YbaB/EbfC DNA-binding family M634_13295 PF12170 DNA polymerase III tau subunit V interacting with alpha M634_13295 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding M634_13295 PF12169 DNA polymerase III subunits gamma and tau domain III M634_13300 PF00156 Phosphoribosyl transferase domain M634_13305 PF04304 Protein of unknown function (DUF454) M634_13315 PF00072 Response regulator receiver domain M634_13320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_13320 PF03466 LysR substrate binding domain M634_13325 PF00156 Phosphoribosyl transferase domain M634_13330 PF02674 Colicin V production protein M634_13335 PF05036 Sporulation related domain M634_13340 PF08245 Mur ligase middle domain M634_13340 PF02875 Mur ligase family, glutamate ligase domain M634_13345 PF17848 Acetyl-coA carboxylase zinc finger domain M634_13345 PF01039 Carboxyl transferase domain M634_13350 PF01416 tRNA pseudouridine synthase M634_13360 PF02774 Semialdehyde dehydrogenase, dimerisation domain M634_13360 PF01118 Semialdehyde dehydrogenase, NAD binding domain M634_13365 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M634_13365 PF11890 Domain of unknown function (DUF3410) M634_13365 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M634_13370 PF02801 Beta-ketoacyl synthase, C-terminal domain M634_13370 PF00109 Beta-ketoacyl synthase, N-terminal domain M634_13375 PF05430 S-adenosyl-L-methionine-dependent methyltransferase M634_13375 PF01266 FAD dependent oxidoreductase M634_13380 PF03358 NADPH-dependent FMN reductase M634_13385 PF08891 YfcL protein M634_13390 PF04315 Elongation factor P hydroxylase M634_13400 PF03458 UPF0126 domain M634_13405 PF01264 Chorismate synthase M634_13410 PF05175 Methyltransferase small domain M634_13415 PF01713 Smr domain M634_13420 PF00300 Histidine phosphatase superfamily (branch 1) M634_13425 PF16187 Middle or third domain of peptidase_M16 M634_13425 PF05193 Peptidase M16 inactive domain M634_13425 PF00675 Insulinase (Peptidase family M16) M634_13435 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M634_13435 PF00378 Enoyl-CoA hydratase/isomerase M634_13435 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M634_13440 PF02803 Thiolase, C-terminal domain M634_13440 PF00108 Thiolase, N-terminal domain M634_13450 PF08281 Sigma-70, region 4 M634_13450 PF04542 Sigma-70 region 2 M634_13460 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) M634_13465 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) M634_13470 PF04333 MlaA lipoprotein M634_13480 PF03918 Cytochrome C biogenesis protein M634_13485 PF08534 Redoxin M634_13490 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal M634_13490 PF01578 Cytochrome C assembly protein M634_13495 PF03100 CcmE M634_13500 PF04995 Heme exporter protein D (CcmD) M634_13505 PF01578 Cytochrome C assembly protein M634_13510 PF03379 CcmB protein M634_13515 PF00005 ABC transporter M634_13525 PF01584 CheW-like domain M634_13535 PF13614 AAA domain M634_13540 PF00072 Response regulator receiver domain M634_13540 PF01339 CheB methylesterase M634_13545 PF07194 P2 response regulator binding domain M634_13545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_13545 PF01584 CheW-like domain M634_13545 PF01627 Hpt domain M634_13545 PF02895 Signal transducing histidine kinase, homodimeric domain M634_13550 PF04344 Chemotaxis phosphatase, CheZ M634_13555 PF00072 Response regulator receiver domain M634_13560 PF04539 Sigma-70 region 3 M634_13560 PF04542 Sigma-70 region 2 M634_13560 PF04545 Sigma-70, region 4 M634_13565 PF10609 NUBPL iron-transfer P-loop NTPase M634_13570 PF00448 SRP54-type protein, GTPase domain M634_13575 PF00771 FHIPEP family M634_13580 PF01312 FlhB HrpN YscU SpaS Family M634_13585 PF01311 Bacterial export proteins, family 1 M634_13590 PF01313 Bacterial export proteins, family 3 M634_13595 PF00813 FliP family M634_13600 PF04347 Flagellar biosynthesis protein, FliO M634_13605 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M634_13610 PF02154 Flagellar motor switch protein FliM M634_13610 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M634_13630 PF18269 T3SS EscN ATPase C-terminal domain M634_13630 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M634_13640 PF14842 FliG N-terminal domain M634_13640 PF01706 FliG C-terminal domain M634_13640 PF14841 FliG middle domain M634_13645 PF01514 Secretory protein of YscJ/FliF family M634_13645 PF08345 Flagellar M-ring protein C-terminal M634_13650 PF02049 Flagellar hook-basal body complex protein FliE M634_13655 PF00158 Sigma-54 interaction domain M634_13655 PF00072 Response regulator receiver domain M634_13655 PF02954 Bacterial regulatory protein, Fis family M634_13660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_13660 PF00512 His Kinase A (phospho-acceptor) domain M634_13665 PF02954 Bacterial regulatory protein, Fis family M634_13665 PF00158 Sigma-54 interaction domain M634_13665 PF01590 GAF domain M634_13670 PF02561 Flagellar protein FliS M634_13680 PF07195 Flagellar hook-associated protein 2 C-terminus M634_13680 PF07196 Flagellin hook IN motif M634_13680 PF02465 Flagellar hook-associated protein 2 N-terminus M634_13685 PF03646 FlaG protein M634_13690 PF00669 Bacterial flagellin N-terminal helical region M634_13690 PF07196 Flagellin hook IN motif M634_13690 PF00700 Bacterial flagellin C-terminal helical region M634_13695 PF00669 Bacterial flagellin N-terminal helical region M634_13695 PF00700 Bacterial flagellin C-terminal helical region M634_13695 PF07196 Flagellin hook IN motif M634_13705 PF00700 Bacterial flagellin C-terminal helical region M634_13705 PF00669 Bacterial flagellin N-terminal helical region M634_13705 PF07196 Flagellin hook IN motif M634_13710 PF04261 Dyp-type peroxidase family M634_13715 PF11143 Protein of unknown function (DUF2919) M634_13735 PF03960 ArsC family M634_13740 PF01546 Peptidase family M20/M25/M40 M634_13740 PF07687 Peptidase dimerisation domain M634_13760 PF00701 Dihydrodipicolinate synthetase family M634_13765 PF01842 ACT domain M634_13770 PF00578 AhpC/TSA family M634_13775 PF01594 AI-2E family transporter M634_13785 PF01435 Peptidase family M48 M634_13785 PF13181 Tetratricopeptide repeat M634_13790 PF03960 ArsC family M634_13795 PF03358 NADPH-dependent FMN reductase M634_13810 PF00860 Permease family M634_13820 PF02769 AIR synthase related protein, C-terminal domain M634_13820 PF00586 AIR synthase related protein, N-terminal domain M634_13825 PF00551 Formyl transferase M634_13830 PF13230 Glutamine amidotransferases class-II M634_13835 PF13580 SIS domain M634_13840 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M634_13840 PF02770 Acyl-CoA dehydrogenase, middle domain M634_13840 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M634_13840 PF09317 Domain of unknown function (DUF1974) M634_13845 PF00916 Sulfate permease family M634_13845 PF01740 STAS domain M634_13855 PF00929 Exonuclease M634_13860 PF00075 RNase H M634_13865 PF08241 Methyltransferase domain M634_13870 PF16123 Hydroxyacylglutathione hydrolase C-terminus M634_13870 PF00753 Metallo-beta-lactamase superfamily M634_13875 PF01476 LysM domain M634_13875 PF01464 Transglycosylase SLT domain M634_13885 PF03372 Endonuclease/Exonuclease/phosphatase family M634_13890 PF00543 Nitrogen regulatory protein P-II M634_13895 PF00034 Cytochrome c M634_13900 PF01171 PP-loop family M634_13900 PF11734 TilS substrate C-terminal domain M634_13900 PF09179 TilS substrate binding domain M634_13905 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit M634_13910 PF01336 OB-fold nucleic acid binding domain M634_13910 PF07733 Bacterial DNA polymerase III alpha NTPase domain M634_13910 PF14579 Helix-hairpin-helix motif M634_13910 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M634_13910 PF02811 PHP domain M634_13915 PF01351 Ribonuclease HII M634_13920 PF02684 Lipid-A-disaccharide synthetase M634_13925 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 M634_13925 PF00132 Bacterial transferase hexapeptide (six repeats) M634_13930 PF07977 FabA-like domain M634_13935 PF00132 Bacterial transferase hexapeptide (six repeats) M634_13935 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD M634_13940 PF03938 Outer membrane protein (OmpH-like) M634_13945 PF01103 Surface antigen M634_13945 PF07244 Surface antigen variable number repeat M634_13950 PF02163 Peptidase family M50 M634_13950 PF17820 PDZ domain M634_13955 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain M634_13955 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase M634_13955 PF13288 DXP reductoisomerase C-terminal domain M634_13965 PF01255 Putative undecaprenyl diphosphate synthase M634_13970 PF01765 Ribosome recycling factor M634_13975 PF00696 Amino acid kinase family M634_13980 PF00889 Elongation factor TS M634_13985 PF00318 Ribosomal protein S2 M634_13990 PF00557 Metallopeptidase family M24 M634_13995 PF01842 ACT domain M634_13995 PF08335 GlnD PII-uridylyltransferase M634_13995 PF01966 HD domain M634_13995 PF01909 Nucleotidyltransferase domain M634_14000 PF11944 Protein of unknown function (DUF3461) M634_14005 PF00849 RNA pseudouridylate synthase M634_14010 PF04287 tRNA pseudouridine synthase C M634_14010 PF00849 RNA pseudouridylate synthase M634_14035 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 M634_14040 PF03806 AbgT putative transporter family M634_14045 PF01197 Ribosomal protein L31 M634_14050 PF01980 tRNA-methyltransferase O M634_14050 PF18389 TrmO C-terminal domain M634_14055 PF03129 Anticodon binding domain M634_14055 PF04073 Aminoacyl-tRNA editing domain M634_14055 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M634_14065 PF06786 Uncharacterised protein family (UPF0253) M634_14075 PF00209 Sodium:neurotransmitter symporter family M634_14090 PF01272 Transcription elongation factor, GreA/GreB, C-term M634_14090 PF03449 Transcription elongation factor, N-terminal M634_14095 PF00270 DEAD/DEAH box helicase M634_14095 PF09382 RQC domain M634_14095 PF00271 Helicase conserved C-terminal domain M634_14095 PF16124 RecQ zinc-binding M634_14095 PF00570 HRDC domain M634_14100 PF00817 impB/mucB/samB family M634_14100 PF11799 impB/mucB/samB family C-terminal domain M634_14100 PF11798 IMS family HHH motif M634_14115 PF02424 ApbE family M634_14120 PF00175 Oxidoreductase NAD-binding domain M634_14120 PF00111 2Fe-2S iron-sulfur cluster binding domain M634_14120 PF00970 Oxidoreductase FAD-binding domain M634_14125 PF02508 Rnf-Nqr subunit, membrane protein M634_14130 PF02508 Rnf-Nqr subunit, membrane protein M634_14135 PF04205 FMN-binding domain M634_14140 PF03116 NQR2, RnfD, RnfE family M634_14145 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) M634_14145 PF11973 NQRA C-terminal domain M634_14155 PF01722 BolA-like protein M634_14160 PF05175 Methyltransferase small domain M634_14165 PF08139 Prokaryotic membrane lipoprotein lipid attachment site M634_14165 PF03923 Uncharacterized lipoprotein M634_14170 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M634_14175 PF07690 Major Facilitator Superfamily M634_14185 PF04542 Sigma-70 region 2 M634_14185 PF04545 Sigma-70, region 4 M634_14200 PF03502 Nucleoside-specific channel-forming protein, Tsx M634_14205 PF08546 Ketopantoate reductase PanE/ApbA C terminal M634_14205 PF02558 Ketopantoate reductase PanE/ApbA M634_14210 PF01965 DJ-1/PfpI family M634_14215 PF00266 Aminotransferase class-V M634_14220 PF02657 Fe-S metabolism associated domain M634_14225 PF00899 ThiF family M634_14230 PF03562 MltA specific insert domain M634_14230 PF06725 3D domain M634_14240 PF00583 Acetyltransferase (GNAT) family M634_14240 PF00696 Amino acid kinase family M634_14255 PF13538 UvrD-like helicase C-terminal domain M634_14260 PF00580 UvrD/REP helicase N-terminal domain M634_14260 PF13361 UvrD-like helicase C-terminal domain M634_14260 PF12705 PD-(D/E)XK nuclease superfamily M634_14270 PF17946 RecC C-terminal domain M634_14275 PF00884 Sulfatase M634_14275 PF11893 Domain of unknown function (DUF3413) M634_14290 PF07130 YebG protein M634_14295 PF14602 Hexapeptide repeat of succinyl-transferase M634_14295 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle M634_14300 PF03009 Glycerophosphoryl diester phosphodiesterase family M634_14305 PF07690 Major Facilitator Superfamily M634_14310 PF00230 Major intrinsic protein M634_14315 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M634_14315 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M634_14320 PF08220 DeoR-like helix-turn-helix domain M634_14320 PF00455 DeoR C terminal sensor domain M634_14325 PF01266 FAD dependent oxidoreductase M634_14325 PF16901 C-terminal domain of alpha-glycerophosphate oxidase M634_14330 PF01544 CorA-like Mg2+ transporter protein M634_14345 PF01588 Putative tRNA binding domain M634_14350 PF00356 Bacterial regulatory proteins, lacI family M634_14365 PF00356 Bacterial regulatory proteins, lacI family M634_14370 PF01263 Aldose 1-epimerase M634_14375 PF08544 GHMP kinases C terminal M634_14375 PF10509 Galactokinase galactose-binding signature M634_14375 PF00288 GHMP kinases N terminal domain M634_14380 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain M634_14380 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain M634_14385 PF16363 GDP-mannose 4,6 dehydratase M634_14390 PF00356 Bacterial regulatory proteins, lacI family M634_14395 PF02929 Beta galactosidase small chain M634_14395 PF16353 Domain of unknown function(DUF4981) M634_14395 PF00703 Glycosyl hydrolases family 2 M634_14395 PF02836 Glycosyl hydrolases family 2, TIM barrel domain M634_14395 PF02837 Glycosyl hydrolases family 2, sugar binding domain M634_14400 PF04074 YhcH/YjgK/YiaL M634_14405 PF13520 Amino acid permease M634_14410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_14410 PF03466 LysR substrate binding domain M634_14440 PF00437 Type II/IV secretion system protein M634_14470 PF13629 Pilus formation protein N terminal region M634_14470 PF00263 Bacterial type II and III secretion system protein M634_14470 PF04972 BON domain M634_14495 PF12833 Helix-turn-helix domain M634_14495 PF02805 Metal binding domain of Ada M634_14500 PF00501 AMP-binding enzyme M634_14510 PF03466 LysR substrate binding domain M634_14510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_14515 PF00009 Elongation factor Tu GTP binding domain M634_14515 PF00679 Elongation factor G C-terminus M634_14515 PF14492 Elongation Factor G, domain II M634_14515 PF03144 Elongation factor Tu domain 2 M634_14515 PF03764 Elongation factor G, domain IV M634_14520 PF18073 Rubredoxin metal binding domain M634_14530 PF18429 Domain of unknown function (DUF5609) M634_14540 PF01048 Phosphorylase superfamily M634_14545 PF01676 Metalloenzyme superfamily M634_14550 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain M634_14550 PF02885 Glycosyl transferase family, helical bundle domain M634_14550 PF00591 Glycosyl transferase family, a/b domain M634_14555 PF01791 DeoC/LacD family aldolase M634_14560 PF01773 Na+ dependent nucleoside transporter N-terminus M634_14560 PF07662 Na+ dependent nucleoside transporter C-terminus M634_14560 PF07670 Nucleoside recognition M634_14565 PF01026 TatD related DNase M634_14575 PF03144 Elongation factor Tu domain 2 M634_14575 PF00009 Elongation factor Tu GTP binding domain M634_14575 PF16658 Class II release factor RF3, C-terminal domain M634_14595 PF13508 Acetyltransferase (GNAT) domain M634_14605 PF03707 Bacterial signalling protein N terminal repeat M634_14605 PF00990 Diguanylate cyclase, GGDEF domain M634_14605 PF00563 EAL domain M634_14620 PF01554 MatE M634_14630 PF07719 Tetratricopeptide repeat M634_14630 PF13181 Tetratricopeptide repeat M634_14635 PF01138 3' exoribonuclease family, domain 1 M634_14635 PF00575 S1 RNA binding domain M634_14635 PF00013 KH domain M634_14635 PF03725 3' exoribonuclease family, domain 2 M634_14635 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain M634_14640 PF00312 Ribosomal protein S15 M634_14645 PF09157 Pseudouridine synthase II TruB, C-terminal M634_14645 PF16198 tRNA pseudouridylate synthase B C-terminal domain M634_14645 PF01509 TruB family pseudouridylate synthase (N terminal domain) M634_14650 PF02033 Ribosome-binding factor A M634_14655 PF11987 Translation-initiation factor 2 M634_14655 PF00009 Elongation factor Tu GTP binding domain M634_14655 PF04760 Translation initiation factor IF-2, N-terminal region M634_14655 PF08364 Bacterial translation initiation factor IF-2 associated region M634_14660 PF13184 NusA-like KH domain M634_14660 PF08529 NusA N-terminal domain M634_14660 PF00575 S1 RNA binding domain M634_14665 PF17384 RimP C-terminal SH3 domain M634_14665 PF02576 RimP N-terminal domain M634_14680 PF03840 Preprotein translocase SecG subunit M634_14690 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M634_14690 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M634_14690 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M634_14690 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M634_14695 PF00809 Pterin binding enzyme M634_14700 PF01434 Peptidase family M41 M634_14700 PF17862 AAA+ lid domain M634_14700 PF00004 ATPase family associated with various cellular activities (AAA) M634_14700 PF06480 FtsH Extracellular M634_14705 PF01728 FtsJ-like methyltransferase M634_14710 PF01985 CRS1 / YhbY (CRM) domain M634_14715 PF03449 Transcription elongation factor, N-terminal M634_14715 PF01272 Transcription elongation factor, GreA/GreB, C-term M634_14720 PF13609 Gram-negative porin M634_14725 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family M634_14735 PF00579 tRNA synthetases class I (W and Y) M634_14740 PF01476 LysM domain M634_14740 PF08525 Opacity-associated protein A N-terminal motif M634_14740 PF01551 Peptidase family M23 M634_14745 PF00873 AcrB/AcrD/AcrF family M634_14755 PF01521 Iron-sulphur cluster biosynthesis M634_14760 PF00202 Aminotransferase class-III M634_14775 PF01594 AI-2E family transporter M634_14780 PF08468 Methyltransferase small domain N-terminal M634_14780 PF05175 Methyltransferase small domain M634_14785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_14785 PF00512 His Kinase A (phospho-acceptor) domain M634_14785 PF00072 Response regulator receiver domain M634_14785 PF00497 Bacterial extracellular solute-binding proteins, family 3 M634_14790 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M634_14795 PF00528 Binding-protein-dependent transport system inner membrane component M634_14800 PF00528 Binding-protein-dependent transport system inner membrane component M634_14800 PF12911 N-terminal TM domain of oligopeptide transport permease C M634_14805 PF00005 ABC transporter M634_14805 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M634_14810 PF00005 ABC transporter M634_14810 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M634_14820 PF01869 BadF/BadG/BcrA/BcrD ATPase family M634_14825 PF00728 Glycosyl hydrolase family 20, catalytic domain M634_14825 PF02838 Glycosyl hydrolase family 20, domain 2 M634_14830 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain M634_14830 PF06165 Glycosyltransferase family 36 M634_14835 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M634_14835 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M634_14835 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M634_14840 PF08402 TOBE domain M634_14840 PF00005 ABC transporter M634_14850 PF13416 Bacterial extracellular solute-binding protein M634_14855 PF00909 Ammonium Transporter Family M634_14860 PF00543 Nitrogen regulatory protein P-II M634_14865 PF06062 Uncharacterised protein family (UPF0231) M634_14870 PF00330 Aconitase family (aconitate hydratase) M634_14870 PF06434 Aconitate hydratase 2 N-terminus M634_14870 PF11791 Aconitate B N-terminal domain M634_14875 PF01734 Patatin-like phospholipase M634_14880 PF14814 Bifunctional transglycosylase second domain M634_14880 PF00905 Penicillin binding protein transpeptidase domain M634_14880 PF00912 Transglycosylase M634_14885 PF08482 ATP-dependent helicase C-terminal M634_14885 PF00271 Helicase conserved C-terminal domain M634_14885 PF04408 Helicase associated domain (HA2) M634_14885 PF00270 DEAD/DEAH box helicase M634_14890 PF17746 SfsA N-terminal OB domain M634_14890 PF03749 Sugar fermentation stimulation protein RE domain M634_14895 PF01258 Prokaryotic dksA/traR C4-type zinc finger M634_14900 PF00749 tRNA synthetases class I (E and Q), catalytic domain M634_14905 PF12627 Probable RNA and SrmB- binding site of polymerase A M634_14905 PF01743 Poly A polymerase head domain M634_14905 PF12626 Polymerase A arginine-rich C-terminus M634_14910 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) M634_14915 PF02548 Ketopantoate hydroxymethyltransferase M634_14920 PF02569 Pantoate-beta-alanine ligase M634_14925 PF03279 Bacterial lipid A biosynthesis acyltransferase M634_14930 PF01061 ABC-2 type transporter M634_14935 PF00005 ABC transporter M634_14940 PF01740 STAS domain M634_14940 PF00916 Sulfate permease family M634_14945 PF00484 Carbonic anhydrase M634_14950 PF00156 Phosphoribosyl transferase domain M634_14955 PF00440 Bacterial regulatory proteins, tetR family M634_14960 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M634_14960 PF07992 Pyridine nucleotide-disulphide oxidoreductase M634_14965 PF00364 Biotin-requiring enzyme M634_14965 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M634_14965 PF02817 e3 binding domain M634_14970 PF00456 Transketolase, thiamine diphosphate binding domain M634_14970 PF17831 Pyruvate dehydrogenase E1 component middle domain M634_14975 PF00392 Bacterial regulatory proteins, gntR family M634_14975 PF07729 FCD domain M634_14980 PF01510 N-acetylmuramoyl-L-alanine amidase M634_14985 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain M634_14985 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain M634_14990 PF07963 Prokaryotic N-terminal methylation motif M634_14990 PF00114 Pilin (bacterial filament) M634_14995 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M634_14995 PF00437 Type II/IV secretion system protein M634_15000 PF00482 Type II secretion system (T2SS), protein F M634_15005 PF01478 Type IV leader peptidase family M634_15005 PF06750 Bacterial Peptidase A24 N-terminal domain M634_15010 PF01121 Dephospho-CoA kinase M634_15015 PF07072 Cell division protein M634_15020 PF03884 DNA gyrase inhibitor YacG M634_15030 PF01245 Ribosomal protein L19 M634_15035 PF01746 tRNA (Guanine-1)-methyltransferase M634_15040 PF01782 RimM N-terminal domain M634_15040 PF05239 PRC-barrel domain M634_15045 PF00886 Ribosomal protein S16 M634_15050 PF00448 SRP54-type protein, GTPase domain M634_15050 PF02881 SRP54-type protein, helical bundle domain M634_15050 PF02978 Signal peptide binding domain M634_15055 PF01578 Cytochrome C assembly protein M634_15060 PF03471 Transporter associated domain M634_15060 PF00571 CBS domain M634_15060 PF01595 Cyclin M transmembrane N-terminal domain M634_15065 PF02664 S-Ribosylhomocysteinase (LuxS) M634_15075 PF04262 Glutamate-cysteine ligase M634_15080 PF05193 Peptidase M16 inactive domain M634_15080 PF00675 Insulinase (Peptidase family M16) M634_15085 PF09335 SNARE associated Golgi protein M634_15090 PF08240 Alcohol dehydrogenase GroES-like domain M634_15090 PF00107 Zinc-binding dehydrogenase M634_15095 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit M634_15100 PF00682 HMGL-like M634_15100 PF02436 Conserved carboxylase domain M634_15100 PF00364 Biotin-requiring enzyme M634_15105 PF04277 Oxaloacetate decarboxylase, gamma chain M634_15155 PF02599 Global regulator protein family M634_15160 PF13840 ACT domain M634_15160 PF01842 ACT domain M634_15160 PF00696 Amino acid kinase family M634_15165 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M634_15165 PF01411 tRNA synthetases class II (A) M634_15165 PF02272 DHHA1 domain M634_15170 PF02631 RecX family M634_15175 PF00154 recA bacterial DNA recombination protein M634_15180 PF02464 Competence-damaged protein M634_15185 PF01624 MutS domain I M634_15185 PF05188 MutS domain II M634_15185 PF05192 MutS domain III M634_15185 PF05190 MutS family domain IV M634_15185 PF00488 MutS domain V M634_15195 PF01551 Peptidase family M23 M634_15195 PF01476 LysM domain M634_15205 PF01975 Survival protein SurE M634_15210 PF01142 tRNA pseudouridine synthase D (TruD) M634_15215 PF02542 YgbB family M634_15220 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase M634_15225 PF04977 Septum formation initiator M634_15230 PF00113 Enolase, C-terminal TIM barrel domain M634_15230 PF03952 Enolase, N-terminal domain M634_15235 PF00113 Enolase, C-terminal TIM barrel domain M634_15235 PF03952 Enolase, N-terminal domain M634_15240 PF06418 CTP synthase N-terminus M634_15240 PF00117 Glutamine amidotransferase class-I M634_15245 PF03819 MazG nucleotide pyrophosphohydrolase domain M634_15250 PF13291 ACT domain M634_15250 PF02824 TGS domain M634_15250 PF04607 Region found in RelA / SpoT proteins M634_15255 PF01938 TRAM domain M634_15255 PF05958 tRNA (Uracil-5-)-methyltransferase M634_15260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_15260 PF00512 His Kinase A (phospho-acceptor) domain M634_15260 PF00672 HAMP domain M634_15260 PF01627 Hpt domain M634_15260 PF00072 Response regulator receiver domain M634_15260 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M634_15265 PF01648 4'-phosphopantetheinyl transferase superfamily M634_15270 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ M634_15275 PF02565 Recombination protein O C terminal M634_15275 PF11967 Recombination protein O N terminal M634_15280 PF01926 50S ribosome-binding GTPase M634_15280 PF07650 KH domain M634_15285 PF00035 Double-stranded RNA binding motif M634_15285 PF14622 Ribonuclease-III-like M634_15290 PF10502 Signal peptidase, peptidase S26 M634_15295 PF06421 GTP-binding protein LepA C-terminus M634_15295 PF03144 Elongation factor Tu domain 2 M634_15295 PF00679 Elongation factor G C-terminus M634_15295 PF00009 Elongation factor Tu GTP binding domain M634_15305 PF03888 MucB/RseB N-terminal domain M634_15305 PF17188 MucB/RseB C-terminal domain M634_15310 PF03873 Anti sigma-E protein RseA, C-terminal domain M634_15310 PF03872 Anti sigma-E protein RseA, N-terminal domain M634_15315 PF04542 Sigma-70 region 2 M634_15315 PF08281 Sigma-70, region 4 M634_15320 PF00890 FAD binding domain M634_15320 PF02910 Fumarate reductase flavoprotein C-term M634_15325 PF03937 Flavinator of succinate dehydrogenase M634_15330 PF01571 Aminomethyltransferase folate-binding domain M634_15345 PF01494 FAD binding domain M634_15350 PF01494 FAD binding domain M634_15355 PF03695 Uncharacterised protein family (UPF0149) M634_15360 PF05164 Cell division protein ZapA M634_15365 PF01812 5-formyltetrahydrofolate cyclo-ligase family M634_15370 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) M634_15375 PF01842 ACT domain M634_15375 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M634_15375 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M634_15380 PF04402 Protein of unknown function (DUF541) M634_15390 PF03466 LysR substrate binding domain M634_15390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_15395 PF01810 LysE type translocator M634_15400 PF04073 Aminoacyl-tRNA editing domain M634_15405 PF00924 Mechanosensitive ion channel M634_15405 PF05552 Conserved TM helix M634_15410 PF01116 Fructose-bisphosphate aldolase class-II M634_15415 PF00162 Phosphoglycerate kinase M634_15420 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M634_15420 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M634_15425 PF00593 TonB dependent receptor M634_15425 PF07715 TonB-dependent Receptor Plug Domain M634_15430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_15430 PF03466 LysR substrate binding domain M634_15435 PF00456 Transketolase, thiamine diphosphate binding domain M634_15435 PF02780 Transketolase, C-terminal domain M634_15435 PF02779 Transketolase, pyrimidine binding domain M634_15445 PF02773 S-adenosylmethionine synthetase, C-terminal domain M634_15445 PF02772 S-adenosylmethionine synthetase, central domain M634_15445 PF00438 S-adenosylmethionine synthetase, N-terminal domain M634_15455 PF17283 SprT-like zinc ribbon domain M634_15455 PF10263 SprT-like family M634_15460 PF04231 Endonuclease I M634_15465 PF04452 RNA methyltransferase M634_15470 PF02951 Prokaryotic glutathione synthetase, N-terminal domain M634_15470 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain M634_15475 PF02622 Uncharacterized ACR, COG1678 M634_15480 PF03652 Holliday junction resolvase M634_15485 PF00437 Type II/IV secretion system protein M634_15490 PF00437 Type II/IV secretion system protein M634_15495 PF01168 Alanine racemase, N-terminal domain M634_15500 PF03807 NADP oxidoreductase coenzyme F420-dependent M634_15500 PF14748 Pyrroline-5-carboxylate reductase dimerisation M634_15505 PF02325 YGGT family M634_15510 PF02594 Uncharacterised ACR, YggU family COG1872 M634_15520 PF01725 Ham1 family M634_15525 PF06969 HemN C-terminal domain M634_15525 PF04055 Radical SAM superfamily M634_15530 PF04960 Glutaminase M634_15535 PF02086 D12 class N6 adenine-specific DNA methyltransferase M634_15540 PF02390 Putative methyltransferase M634_15545 PF14815 NUDIX domain M634_15545 PF00730 HhH-GPD superfamily base excision DNA repair protein M634_15545 PF00633 Helix-hairpin-helix motif M634_15550 PF04362 Bacterial Fe(2+) trafficking M634_15555 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain M634_15555 PF01464 Transglycosylase SLT domain M634_15595 PF17200 Single Cache domain 2 M634_15595 PF00672 HAMP domain M634_15595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M634_15625 PF00171 Aldehyde dehydrogenase family M634_15670 PF00072 Response regulator receiver domain M634_15675 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M634_15675 PF00356 Bacterial regulatory proteins, lacI family M634_15680 PF04794 YdjC-like protein M634_15685 PF11975 Family 4 glycosyl hydrolase C-terminal domain M634_15685 PF02056 Family 4 glycosyl hydrolase M634_15690 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit M634_15695 PF02378 Phosphotransferase system, EIIC M634_15700 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M634_15705 PF01522 Polysaccharide deacetylase M634_15710 PF00872 Transposase, Mutator family M634_15735 PF00106 short chain dehydrogenase M634_15740 PF10011 Predicted membrane protein (DUF2254) M634_15750 PF03739 Lipopolysaccharide export system permease LptF/LptG M634_15755 PF03739 Lipopolysaccharide export system permease LptF/LptG M634_15760 PF02789 Cytosol aminopeptidase family, N-terminal domain M634_15760 PF00883 Cytosol aminopeptidase family, catalytic domain M634_15765 PF04364 DNA polymerase III chi subunit, HolC M634_15770 PF08264 Anticodon-binding domain of tRNA M634_15770 PF10458 Valyl tRNA synthetase tRNA binding arm M634_15770 PF00133 tRNA synthetases class I (I, L, M and V) M634_15780 PF00583 Acetyltransferase (GNAT) family M634_15790 PF06877 Regulator of ribonuclease activity B M634_15800 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M634_15800 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M634_15805 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M634_15805 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M634_15810 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain M634_15810 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain M634_15815 PF01042 Endoribonuclease L-PSP M634_15820 PF01553 Acyltransferase M634_15825 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M634_15830 PF01722 BolA-like protein M634_15840 PF05494 MlaC protein M634_15845 PF02470 MlaD protein M634_15850 PF02405 Permease MlaE M634_15855 PF00005 ABC transporter M634_15860 PF01699 Sodium/calcium exchanger protein M634_15865 PF01380 SIS domain M634_15865 PF00571 CBS domain M634_15875 PF03968 OstA-like protein M634_15880 PF00005 ABC transporter M634_15880 PF12399 Branched-chain amino acid ATP-binding cassette transporter M634_15885 PF00309 Sigma-54 factor, Activator interacting domain (AID) M634_15885 PF04963 Sigma-54 factor, core binding domain M634_15885 PF04552 Sigma-54, DNA binding domain M634_15890 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein M634_15895 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M634_15900 PF03668 P-loop ATPase protein family M634_15905 PF00381 PTS HPr component phosphorylation site M634_15910 PF03448 MgtE intracellular N domain M634_15910 PF01769 Divalent cation transporter M634_15910 PF00571 CBS domain M634_15915 PF01523 Putative modulator of DNA gyrase M634_15920 PF04751 Protein of unknown function (DUF615) M634_15925 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M634_15925 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M634_15930 PF00849 RNA pseudouridylate synthase M634_15945 PF00271 Helicase conserved C-terminal domain M634_15945 PF12137 RNA polymerase recycling family C-terminal M634_15945 PF18339 RapA N-terminal Tudor like domain 1 M634_15945 PF18337 RapA N-terminal Tudor like domain M634_15945 PF00176 SNF2 family N-terminal domain M634_15950 PF02562 PhoH-like protein M634_15950 PF13638 PIN domain M634_15955 PF01523 Putative modulator of DNA gyrase M634_15960 PF00795 Carbon-nitrogen hydrolase M634_15965 PF13116 Protein of unknown function M634_15965 PF13502 AsmA-like C-terminal region M634_15970 PF00575 S1 RNA binding domain M634_15970 PF10150 Ribonuclease E/G family M634_15975 PF02545 Maf-like protein M634_15980 PF04093 rod shape-determining protein MreD M634_15985 PF04085 rod shape-determining protein MreC M634_16025 PF07963 Prokaryotic N-terminal methylation motif M634_16025 PF00114 Pilin (bacterial filament) M634_16035 PF00482 Type II secretion system (T2SS), protein F M634_16040 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M634_16040 PF00437 Type II/IV secretion system protein M634_16050 PF01471 Putative peptidoglycan binding domain M634_16050 PF13401 AAA domain M634_16055 PF03958 Bacterial type II/III secretion system short domain M634_16055 PF00263 Bacterial type II and III secretion system protein M634_16055 PF11741 AMIN domain M634_16055 PF07660 Secretin and TonB N terminus short domain M634_16075 PF17157 Gammaproteobacterial periplasmic sensor domain M634_16075 PF00563 EAL domain M634_16075 PF00990 Diguanylate cyclase, GGDEF domain M634_16080 PF00436 Single-strand binding protein family M634_16085 PF00196 Bacterial regulatory proteins, luxR family M634_16090 PF00483 Nucleotidyl transferase M634_16095 PF17760 UvrA interaction domain M634_16095 PF17755 UvrA DNA-binding domain M634_16095 PF00005 ABC transporter M634_16105 PF00266 Aminotransferase class-V M634_16115 PF00696 Amino acid kinase family M634_16115 PF01842 ACT domain M634_16120 PF02574 Homocysteine S-methyltransferase M634_16120 PF00809 Pterin binding enzyme M634_16120 PF02607 B12 binding domain M634_16120 PF02310 B12 binding domain M634_16120 PF02965 Vitamin B12 dependent methionine synthase, activation domain M634_16125 PF00999 Sodium/hydrogen exchanger family M634_16320 PF00990 Diguanylate cyclase, GGDEF domain M634_16320 PF13426 PAS domain M634_16320 PF00563 EAL domain M634_16330 PF00753 Metallo-beta-lactamase superfamily M634_16330 PF14863 Alkyl sulfatase dimerisation M634_16330 PF14864 Alkyl sulfatase C-terminal M634_16335 PF00753 Metallo-beta-lactamase superfamily M634_16335 PF14863 Alkyl sulfatase dimerisation M634_16335 PF14864 Alkyl sulfatase C-terminal M634_16340 PF14864 Alkyl sulfatase C-terminal M634_16340 PF14863 Alkyl sulfatase dimerisation M634_16340 PF00753 Metallo-beta-lactamase superfamily M634_16350 PF13737 Transposase DDE domain M634_16445 PF09299 Mu transposase, C-terminal M634_16445 PF00665 Integrase core domain M634_16465 PF00528 Binding-protein-dependent transport system inner membrane component M634_16470 PF00528 Binding-protein-dependent transport system inner membrane component M634_16470 PF14785 Maltose transport system permease protein MalF P2 domain M634_16475 PF01547 Bacterial extracellular solute-binding protein M634_16485 PF00005 ABC transporter M634_16485 PF08402 TOBE domain M634_16490 PF02397 Bacterial sugar transferase M634_16515 PF00534 Glycosyl transferases group 1 M634_16515 PF13439 Glycosyltransferase Family 4 M634_16550 PF16925 Tetracyclin repressor-like, C-terminal domain M634_16550 PF00440 Bacterial regulatory proteins, tetR family M634_16555 PF16884 N-terminal domain of oxidoreductase M634_16555 PF00107 Zinc-binding dehydrogenase M634_16560 PF13417 Glutathione S-transferase, N-terminal domain M634_16565 PF00199 Catalase M634_16565 PF06628 Catalase-related immune-responsive M634_16570 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M634_16570 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M634_16580 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M634_16590 PF12833 Helix-turn-helix domain M634_16595 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M634_16595 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M634_16600 PF01238 Phosphomannose isomerase type I M634_16610 PF13419 Haloacid dehalogenase-like hydrolase M634_16615 PF00127 Copper binding proteins, plastocyanin/azurin family M634_16620 PF00990 Diguanylate cyclase, GGDEF domain M634_16620 PF03707 Bacterial signalling protein N terminal repeat M634_16620 PF00563 EAL domain M634_16625 PF02386 Cation transport protein M634_16630 PF02254 TrkA-N domain M634_16630 PF02080 TrkA-C domain M634_16635 PF00072 Response regulator receiver domain M634_16635 PF00486 Transcriptional regulatory protein, C terminal M634_16640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_16640 PF00512 His Kinase A (phospho-acceptor) domain M634_16640 PF00989 PAS fold M634_16640 PF16736 Single Cache-like M634_16645 PF00664 ABC transporter transmembrane region M634_16645 PF00005 ABC transporter M634_16650 PF07715 TonB-dependent Receptor Plug Domain M634_16650 PF00593 TonB dependent receptor M634_16655 PF00005 ABC transporter M634_16660 PF01497 Periplasmic binding protein M634_16665 PF01032 FecCD transport family M634_16675 PF00691 OmpA family M634_16690 PF00529 HlyD membrane-fusion protein of T1SS M634_16695 PF00664 ABC transporter transmembrane region M634_16695 PF00005 ABC transporter M634_16705 PF00196 Bacterial regulatory proteins, luxR family M634_16710 PF00196 Bacterial regulatory proteins, luxR family M634_16720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M634_16720 PF00672 HAMP domain M634_16720 PF02743 Cache domain M634_16725 PF17863 AAA lid domain M634_16725 PF07726 ATPase family associated with various cellular activities (AAA) M634_16730 PF01882 Protein of unknown function DUF58 M634_16740 PF13519 von Willebrand factor type A domain M634_16745 PF13519 von Willebrand factor type A domain M634_16745 PF07584 Aerotolerance regulator N-terminal M634_16760 PF00005 ABC transporter M634_16765 PF00528 Binding-protein-dependent transport system inner membrane component M634_16770 PF00528 Binding-protein-dependent transport system inner membrane component M634_16775 PF12849 PBP superfamily domain M634_16780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M634_16780 PF00672 HAMP domain M634_16800 PF00593 TonB dependent receptor M634_16800 PF07715 TonB-dependent Receptor Plug Domain M634_16805 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain M634_16805 PF00326 Prolyl oligopeptidase family M634_16810 PF00270 DEAD/DEAH box helicase M634_16810 PF00271 Helicase conserved C-terminal domain M634_16820 PF03734 L,D-transpeptidase catalytic domain M634_16820 PF01476 LysM domain M634_16820 PF17969 L,D-transpeptidase C-terminal domain M634_16825 PF00875 DNA photolyase M634_16825 PF03441 FAD binding domain of DNA photolyase M634_16830 PF13411 MerR HTH family regulatory protein M634_16835 PF08349 Protein of unknown function (DUF1722) M634_16840 PF01048 Phosphorylase superfamily M634_16855 PF00990 Diguanylate cyclase, GGDEF domain M634_16860 PF11742 Protein of unknown function (DUF3302) M634_16865 PF00529 HlyD membrane-fusion protein of T1SS M634_16865 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M634_16870 PF07155 ECF-type riboflavin transporter, S component M634_16875 PF12558 ATP-binding cassette cobalt transporter M634_16875 PF00005 ABC transporter M634_16890 PF13237 4Fe-4S dicluster domain M634_16890 PF12801 4Fe-4S binding domain M634_16895 PF12800 4Fe-4S binding domain M634_16895 PF12838 4Fe-4S dicluster domain M634_16900 PF00583 Acetyltransferase (GNAT) family M634_16915 PF07238 PilZ domain M634_16915 PF12945 Flagellar protein YcgR M634_16920 PF00672 HAMP domain M634_16920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M634_16925 PF13654 AAA domain M634_16925 PF05362 Lon protease (S16) C-terminal proteolytic domain M634_16935 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M634_16935 PF00005 ABC transporter M634_16940 PF00326 Prolyl oligopeptidase family M634_16940 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain M634_16945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_16945 PF03466 LysR substrate binding domain M634_16950 PF02652 L-lactate permease M634_16955 PF01070 FMN-dependent dehydrogenase M634_16965 PF00924 Mechanosensitive ion channel M634_16970 PF00194 Eukaryotic-type carbonic anhydrase M634_17000 PF08240 Alcohol dehydrogenase GroES-like domain M634_17000 PF00107 Zinc-binding dehydrogenase M634_17005 PF00155 Aminotransferase class I and II M634_17010 PF03707 Bacterial signalling protein N terminal repeat M634_17010 PF00563 EAL domain M634_17010 PF00990 Diguanylate cyclase, GGDEF domain M634_17015 PF00497 Bacterial extracellular solute-binding proteins, family 3 M634_17020 PF00266 Aminotransferase class-V M634_17025 PF00080 Copper/zinc superoxide dismutase (SODC) M634_17030 PF08448 PAS fold M634_17030 PF13426 PAS domain M634_17030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_17030 PF00072 Response regulator receiver domain M634_17030 PF00512 His Kinase A (phospho-acceptor) domain M634_17035 PF00486 Transcriptional regulatory protein, C terminal M634_17035 PF00072 Response regulator receiver domain M634_17060 PF03466 LysR substrate binding domain M634_17060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_17065 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M634_17100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_17100 PF03466 LysR substrate binding domain M634_17115 PF18269 T3SS EscN ATPase C-terminal domain M634_17115 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M634_17125 PF14841 FliG middle domain M634_17125 PF01706 FliG C-terminal domain M634_17125 PF14842 FliG N-terminal domain M634_17130 PF01514 Secretory protein of YscJ/FliF family M634_17130 PF08345 Flagellar M-ring protein C-terminal M634_17135 PF02049 Flagellar hook-basal body complex protein FliE M634_17140 PF02954 Bacterial regulatory protein, Fis family M634_17140 PF00158 Sigma-54 interaction domain M634_17140 PF00072 Response regulator receiver domain M634_17155 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M634_17160 PF00813 FliP family M634_17165 PF01313 Bacterial export proteins, family 3 M634_17170 PF01311 Bacterial export proteins, family 1 M634_17175 PF01312 FlhB HrpN YscU SpaS Family M634_17180 PF00771 FHIPEP family M634_17190 PF00700 Bacterial flagellin C-terminal helical region M634_17190 PF00669 Bacterial flagellin N-terminal helical region M634_17200 PF02465 Flagellar hook-associated protein 2 N-terminus M634_17200 PF07196 Flagellin hook IN motif M634_17200 PF07195 Flagellar hook-associated protein 2 C-terminus M634_17205 PF02561 Flagellar protein FliS M634_17220 PF03748 Flagellar basal body-associated protein FliL M634_17225 PF04542 Sigma-70 region 2 M634_17225 PF04545 Sigma-70, region 4 M634_17230 PF01618 MotA/TolQ/ExbB proton channel family M634_17235 PF00691 OmpA family M634_17235 PF13677 Membrane MotB of proton-channel complex MotA/MotB M634_17270 PF04055 Radical SAM superfamily M634_17275 PF00923 Transaldolase/Fructose-6-phosphate aldolase M634_17285 PF00583 Acetyltransferase (GNAT) family M634_17295 PF07690 Major Facilitator Superfamily M634_17300 PF03466 LysR substrate binding domain M634_17300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_17305 PF00892 EamA-like transporter family M634_17330 PF13533 Biotin-lipoyl like M634_17340 PF01594 AI-2E family transporter M634_17345 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) M634_17355 PF00175 Oxidoreductase NAD-binding domain M634_17355 PF00970 Oxidoreductase FAD-binding domain M634_17365 PF09905 DNA-binding protein VF530 M634_17370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_17370 PF03466 LysR substrate binding domain M634_17380 PF00881 Nitroreductase family M634_17385 PF12833 Helix-turn-helix domain M634_17385 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term M634_17390 PF00128 Alpha amylase, catalytic domain M634_17390 PF00686 Starch binding domain M634_17395 PF00768 D-alanyl-D-alanine carboxypeptidase M634_17395 PF07943 Penicillin-binding protein 5, C-terminal domain M634_17400 PF00561 alpha/beta hydrolase fold M634_17415 PF18416 N-acetylglucosamine binding protein domain 2 M634_17415 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading M634_17420 PF01734 Patatin-like phospholipase M634_17425 PF01914 MarC family integral membrane protein M634_17430 PF00881 Nitroreductase family M634_17435 PF02563 Polysaccharide biosynthesis/export protein M634_17435 PF10531 SLBB domain M634_17435 PF18412 Outer-membrane lipoprotein Wza C-terminal domain M634_17440 PF01451 Low molecular weight phosphotyrosine protein phosphatase M634_17445 PF13807 G-rich domain on putative tyrosine kinase M634_17445 PF02706 Chain length determinant protein M634_17445 PF13614 AAA domain M634_17455 PF08803 Putative mono-oxygenase ydhR M634_17460 PF03466 LysR substrate binding domain M634_17460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_17490 PF00375 Sodium:dicarboxylate symporter family M634_17510 PF06803 Protein of unknown function (DUF1232) M634_17515 PF01546 Peptidase family M20/M25/M40 M634_17515 PF07687 Peptidase dimerisation domain M634_17520 PF07670 Nucleoside recognition M634_17525 PF07670 Nucleoside recognition M634_17540 PF00128 Alpha amylase, catalytic domain M634_17545 PF00912 Transglycosylase M634_17550 PF02806 Alpha amylase, C-terminal all-beta domain M634_17550 PF00128 Alpha amylase, catalytic domain M634_17550 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) M634_17555 PF02446 4-alpha-glucanotransferase M634_17560 PF00343 Carbohydrate phosphorylase M634_17570 PF00196 Bacterial regulatory proteins, luxR family M634_17570 PF17874 MalT-like TPR region M634_17585 PF02630 SCO1/SenC M634_17595 PF02378 Phosphotransferase system, EIIC M634_17595 PF00367 phosphotransferase system, EIIB M634_17600 PF03193 RsgA GTPase M634_17605 PF00375 Sodium:dicarboxylate symporter family M634_17615 PF08543 Phosphomethylpyrimidine kinase M634_17625 PF13520 Amino acid permease M634_17630 PF01276 Orn/Lys/Arg decarboxylase, major domain M634_17630 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain M634_17630 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain M634_17640 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 M634_17640 PF13542 Helix-turn-helix domain of transposase family ISL3 M634_17640 PF01610 Transposase M634_17650 PF03714 Bacterial pullanase-associated domain M634_17650 PF17967 Pullulanase N2 domain M634_17650 PF18494 Pullulanase Ins domain M634_17650 PF11852 Domain of unknown function (DUF3372) M634_17650 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) M634_17655 PF04231 Endonuclease I M634_17660 PF02903 Alpha amylase, N-terminal ig-like domain M634_17660 PF00128 Alpha amylase, catalytic domain M634_17660 PF16657 Maltogenic Amylase, C-terminal domain M634_17675 PF13333 Integrase core domain M634_17675 PF00665 Integrase core domain M634_17675 PF13276 HTH-like domain M634_17685 PF02264 LamB porin M634_17690 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) M634_17690 PF00128 Alpha amylase, catalytic domain M634_17700 PF07690 Major Facilitator Superfamily M634_17710 PF04225 Opacity-associated protein A LysM-like domain M634_17710 PF01551 Peptidase family M23 M634_17720 PF05193 Peptidase M16 inactive domain M634_17720 PF00675 Insulinase (Peptidase family M16) M634_17725 PF00672 HAMP domain M634_17725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M634_17725 PF17200 Single Cache domain 2 M634_17730 PF00005 ABC transporter M634_17735 PF01032 FecCD transport family M634_17740 PF01032 FecCD transport family M634_17745 PF01497 Periplasmic binding protein M634_17750 PF07715 TonB-dependent Receptor Plug Domain M634_17750 PF07660 Secretin and TonB N terminus short domain M634_17750 PF00593 TonB dependent receptor M634_17755 PF07715 TonB-dependent Receptor Plug Domain M634_17755 PF00593 TonB dependent receptor M634_17760 PF02655 ATP-grasp domain M634_17760 PF00206 Lyase M634_17765 PF06276 Ferric iron reductase FhuF-like transporter M634_17765 PF04183 IucA / IucC family M634_17775 PF04183 IucA / IucC family M634_17775 PF06276 Ferric iron reductase FhuF-like transporter M634_17780 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain M634_17780 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain M634_17785 PF01547 Bacterial extracellular solute-binding protein M634_17790 PF08521 Two-component sensor kinase N-terminal M634_17790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_17790 PF00512 His Kinase A (phospho-acceptor) domain M634_17795 PF00072 Response regulator receiver domain M634_17795 PF00486 Transcriptional regulatory protein, C terminal M634_17800 PF00367 phosphotransferase system, EIIB M634_17800 PF02378 Phosphotransferase system, EIIC M634_17815 PF02653 Branched-chain amino acid transport system / permease component M634_17820 PF00005 ABC transporter M634_17825 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M634_17830 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M634_17830 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M634_17835 PF00596 Class II Aldolase and Adducin N-terminal domain M634_17840 PF11762 L-arabinose isomerase C-terminal domain M634_17840 PF02610 L-arabinose isomerase M634_17850 PF02311 AraC-like ligand binding domain M634_17850 PF12833 Helix-turn-helix domain M634_17865 PF02566 OsmC-like protein M634_17870 PF01047 MarR family M634_17875 PF00578 AhpC/TSA family M634_17875 PF10417 C-terminal domain of 1-Cys peroxiredoxin M634_17880 PF13192 Thioredoxin domain M634_17880 PF07992 Pyridine nucleotide-disulphide oxidoreductase M634_17895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_17895 PF03466 LysR substrate binding domain M634_17900 PF01965 DJ-1/PfpI family M634_17900 PF12833 Helix-turn-helix domain M634_17905 PF08281 Sigma-70, region 4 M634_17905 PF04542 Sigma-70 region 2 M634_17920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M634_17920 PF00672 HAMP domain M634_17920 PF12729 Four helix bundle sensory module for signal transduction M634_17925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_17925 PF03466 LysR substrate binding domain M634_17930 PF11975 Family 4 glycosyl hydrolase C-terminal domain M634_17930 PF02056 Family 4 glycosyl hydrolase M634_17940 PF03475 3-alpha domain M634_17940 PF03473 MOSC domain M634_17945 PF00270 DEAD/DEAH box helicase M634_17945 PF00271 Helicase conserved C-terminal domain M634_17950 PF03786 D-mannonate dehydratase (UxuA) M634_17955 PF07729 FCD domain M634_17955 PF00392 Bacterial regulatory proteins, gntR family M634_17960 PF03480 Bacterial extracellular solute-binding protein, family 7 M634_17965 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component M634_17970 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component M634_17975 PF08125 Mannitol dehydrogenase C-terminal domain M634_17975 PF01232 Mannitol dehydrogenase Rossmann domain M634_17980 PF02614 Glucuronate isomerase M634_17985 PF00294 pfkB family carbohydrate kinase M634_17990 PF01081 KDPG and KHG aldolase M634_17995 PF10688 Bacterial inner membrane protein M634_18005 PF06719 AraC-type transcriptional regulator N-terminus M634_18005 PF12833 Helix-turn-helix domain M634_18015 PF00005 ABC transporter M634_18015 PF00664 ABC transporter transmembrane region M634_18025 PF01037 Lrp/AsnC ligand binding domain M634_18060 PF00474 Sodium:solute symporter family M634_18070 PF00171 Aldehyde dehydrogenase family M634_18070 PF01619 Proline dehydrogenase M634_18070 PF14850 DNA-binding domain of Proline dehydrogenase M634_18070 PF18327 Proline utilization A proline dehydrogenase N-terminal domain M634_18075 PF12833 Helix-turn-helix domain M634_18090 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region M634_18090 PF01243 Pyridoxamine 5'-phosphate oxidase M634_18095 PF02743 Cache domain M634_18095 PF00512 His Kinase A (phospho-acceptor) domain M634_18095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_18100 PF02954 Bacterial regulatory protein, Fis family M634_18100 PF00072 Response regulator receiver domain M634_18100 PF00158 Sigma-54 interaction domain M634_18105 PF00529 HlyD membrane-fusion protein of T1SS M634_18120 PF03412 Peptidase C39 family M634_18120 PF00005 ABC transporter M634_18120 PF00664 ABC transporter transmembrane region M634_18135 PF03358 NADPH-dependent FMN reductase M634_18140 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M634_18145 PF00246 Zinc carboxypeptidase M634_18150 PF01380 SIS domain M634_18150 PF01418 Helix-turn-helix domain, rpiR family M634_18155 PF01380 SIS domain M634_18160 PF02378 Phosphotransferase system, EIIC M634_18160 PF00367 phosphotransferase system, EIIB M634_18165 PF00267 Gram-negative porin M634_18170 PF03575 Peptidase family S51 M634_18175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_18175 PF03466 LysR substrate binding domain M634_18180 PF00132 Bacterial transferase hexapeptide (six repeats) M634_18190 PF05127 Helicase M634_18190 PF13718 GNAT acetyltransferase 2 M634_18195 PF08775 ParB family M634_18195 PF02195 ParB-like nuclease domain M634_18200 PF18607 ParA helix turn helix domain M634_18200 PF13614 AAA domain M634_18220 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M634_18220 PF00005 ABC transporter M634_18230 PF08719 Domain of unknown function (DUF1768) M634_18230 PF00925 GTP cyclohydrolase II M634_18240 PF00072 Response regulator receiver domain M634_18240 PF01627 Hpt domain M634_18240 PF00512 His Kinase A (phospho-acceptor) domain M634_18240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_18240 PF00672 HAMP domain M634_18240 PF17149 Periplasmic sensor domain found in signal transduction proteins M634_18250 PF01709 Transcriptional regulator M634_18255 PF01098 Cell cycle protein M634_18265 PF00005 ABC transporter M634_18285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_18285 PF07694 5TMR of 5TMR-LYT M634_18285 PF06580 Histidine kinase M634_18285 PF13492 GAF domain M634_18290 PF00072 Response regulator receiver domain M634_18290 PF04397 LytTr DNA-binding domain M634_18300 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M634_18305 PF00672 HAMP domain M634_18305 PF17200 Single Cache domain 2 M634_18305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M634_18315 PF00132 Bacterial transferase hexapeptide (six repeats) M634_18320 PF03616 Sodium/glutamate symporter M634_18330 PF00005 ABC transporter M634_18335 PF00392 Bacterial regulatory proteins, gntR family M634_18335 PF00155 Aminotransferase class I and II M634_18340 PF03616 Sodium/glutamate symporter M634_18350 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase M634_18365 PF03466 LysR substrate binding domain M634_18365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_18370 PF17954 Quercetinase C-terminal cupin domain M634_18370 PF02678 Pirin M634_18375 PF07681 DoxX M634_18385 PF00730 HhH-GPD superfamily base excision DNA repair protein M634_18385 PF06029 AlkA N-terminal domain M634_18390 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M634_18390 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M634_18400 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 M634_18410 PF03600 Citrate transporter M634_18435 PF00704 Glycosyl hydrolases family 18 M634_18435 PF08329 Chitinase A, N-terminal domain M634_18445 PF06865 Pyrimidine/purine nucleoside phosphorylase M634_18455 PF00563 EAL domain M634_18455 PF00990 Diguanylate cyclase, GGDEF domain M634_18460 PF01554 MatE M634_18465 PF00849 RNA pseudouridylate synthase M634_18480 PF03466 LysR substrate binding domain M634_18480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_18495 PF17152 Periplasmic sensor domain M634_18495 PF00990 Diguanylate cyclase, GGDEF domain M634_18505 PF00756 Putative esterase M634_18510 PF00107 Zinc-binding dehydrogenase M634_18510 PF08240 Alcohol dehydrogenase GroES-like domain M634_18515 PF00797 N-acetyltransferase M634_18520 PF03466 LysR substrate binding domain M634_18520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_18525 PF08021 Siderophore-interacting FAD-binding domain M634_18525 PF04954 Siderophore-interacting protein M634_18530 PF01810 LysE type translocator M634_18535 PF01037 Lrp/AsnC ligand binding domain M634_18540 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading M634_18540 PF18416 N-acetylglucosamine binding protein domain 2 M634_18555 PF13599 Pentapeptide repeats (9 copies) M634_18560 PF03922 OmpW family M634_18565 PF13533 Biotin-lipoyl like M634_18570 PF07690 Major Facilitator Superfamily M634_18580 PF12706 Beta-lactamase superfamily domain M634_18590 PF01204 Trehalase M634_18595 PF01661 Macro domain M634_18600 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M634_18635 PF17853 GGDEF-like domain M634_18635 PF05651 Putative sugar diacid recognition M634_18635 PF13556 PucR C-terminal helix-turn-helix domain M634_18640 PF02447 GntP family permease M634_18645 PF02595 Glycerate kinase family M634_18650 PF00392 Bacterial regulatory proteins, gntR family M634_18650 PF00155 Aminotransferase class I and II M634_18670 PF00583 Acetyltransferase (GNAT) family M634_18695 PF03264 NapC/NirT cytochrome c family, N-terminal region M634_18700 PF00384 Molybdopterin oxidoreductase M634_18700 PF18364 Molybdopterin oxidoreductase N-terminal domain M634_18700 PF01568 Molydopterin dinucleotide binding domain M634_18710 PF02581 Thiamine monophosphate synthase M634_18715 PF02110 Hydroxyethylthiazole kinase family M634_18720 PF03070 TENA/THI-4/PQQC family M634_18725 PF09084 NMT1/THI5 like M634_18730 PF00528 Binding-protein-dependent transport system inner membrane component M634_18735 PF00005 ABC transporter M634_18740 PF08543 Phosphomethylpyrimidine kinase M634_18745 PF01523 Putative modulator of DNA gyrase M634_18750 PF01523 Putative modulator of DNA gyrase M634_18755 PF04013 Putative SAM-dependent RNA methyltransferase M634_18810 PF10928 Protein of unknown function (DUF2810) M634_18815 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M634_18815 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M634_18825 PF03009 Glycerophosphoryl diester phosphodiesterase family M634_18835 PF00072 Response regulator receiver domain M634_18835 PF00486 Transcriptional regulatory protein, C terminal M634_18840 PF00512 His Kinase A (phospho-acceptor) domain M634_18840 PF00672 HAMP domain M634_18840 PF16750 Sensor domain of 2-component histidine kinase M634_18840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_18845 PF07715 TonB-dependent Receptor Plug Domain M634_18845 PF00593 TonB dependent receptor M634_18855 PF01618 MotA/TolQ/ExbB proton channel family M634_18860 PF01618 MotA/TolQ/ExbB proton channel family M634_18865 PF02472 Biopolymer transport protein ExbD/TolR M634_18905 PF01297 Zinc-uptake complex component A periplasmic M634_18910 PF00005 ABC transporter M634_18915 PF00950 ABC 3 transport family M634_18930 PF00326 Prolyl oligopeptidase family M634_18930 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain M634_18935 PF07690 Major Facilitator Superfamily M634_18940 PF00491 Arginase family M634_18945 PF17944 Arginine decarboxylase C-terminal helical extension M634_18945 PF17810 Arginine decarboxylase helical bundle domain M634_18945 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain M634_18950 PF00753 Metallo-beta-lactamase superfamily M634_18955 PF08443 RimK-like ATP-grasp domain M634_18955 PF18030 RimK PreATP-grasp domain M634_18960 PF18030 RimK PreATP-grasp domain M634_18960 PF08443 RimK-like ATP-grasp domain M634_18970 PF03466 LysR substrate binding domain M634_18970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_18990 PF13542 Helix-turn-helix domain of transposase family ISL3 M634_18990 PF01610 Transposase M634_18990 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 M634_19005 PF00232 Glycosyl hydrolase family 1 M634_19020 PF00512 His Kinase A (phospho-acceptor) domain M634_19020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_19020 PF02743 Cache domain M634_19025 PF02954 Bacterial regulatory protein, Fis family M634_19025 PF00072 Response regulator receiver domain M634_19025 PF00158 Sigma-54 interaction domain M634_19030 PF00990 Diguanylate cyclase, GGDEF domain M634_19030 PF05230 MASE2 domain M634_19035 PF05525 Branched-chain amino acid transport protein M634_19055 PF01266 FAD dependent oxidoreductase M634_19065 PF01212 Beta-eliminating lyase M634_19085 PF01773 Na+ dependent nucleoside transporter N-terminus M634_19085 PF07662 Na+ dependent nucleoside transporter C-terminus M634_19085 PF07670 Nucleoside recognition M634_19100 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M634_19145 PF13538 UvrD-like helicase C-terminal domain M634_19145 PF14490 Helix-hairpin-helix containing domain M634_19145 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain M634_19180 PF00990 Diguanylate cyclase, GGDEF domain M634_19180 PF05230 MASE2 domain M634_19185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M634_19185 PF00672 HAMP domain M634_19185 PF12729 Four helix bundle sensory module for signal transduction M634_19200 PF00990 Diguanylate cyclase, GGDEF domain M634_19205 PF00875 DNA photolyase M634_19205 PF03441 FAD binding domain of DNA photolyase M634_19210 PF04244 Deoxyribodipyrimidine photo-lyase-related protein M634_19225 PF01641 SelR domain M634_19225 PF01625 Peptide methionine sulfoxide reductase M634_19230 PF02566 OsmC-like protein M634_19235 PF12464 Maltose acetyltransferase M634_19235 PF14602 Hexapeptide repeat of succinyl-transferase M634_19270 PF03466 LysR substrate binding domain M634_19270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_19275 PF13419 Haloacid dehalogenase-like hydrolase M634_19290 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) M634_19295 PF00194 Eukaryotic-type carbonic anhydrase M634_19300 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) M634_19305 PF00657 GDSL-like Lipase/Acylhydrolase M634_19320 PF03611 PTS system sugar-specific permease component M634_19330 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M634_19335 PF00356 Bacterial regulatory proteins, lacI family M634_19340 PF13419 Haloacid dehalogenase-like hydrolase M634_19350 PF00266 Aminotransferase class-V M634_19365 PF00005 ABC transporter M634_19370 PF00528 Binding-protein-dependent transport system inner membrane component M634_19375 PF07702 UTRA domain M634_19375 PF00392 Bacterial regulatory proteins, gntR family M634_19390 PF04393 Protein of unknown function (DUF535) M634_19400 PF01266 FAD dependent oxidoreductase M634_19405 PF18027 Cytosolic carboxypeptidase N-terminal domain M634_19405 PF00246 Zinc carboxypeptidase M634_19410 PF00691 OmpA family M634_19410 PF01389 OmpA-like transmembrane domain M634_19415 PF03466 LysR substrate binding domain M634_19415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_19425 PF03466 LysR substrate binding domain M634_19425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_19435 PF00854 POT family M634_19440 PF03313 Serine dehydratase alpha chain M634_19440 PF03315 Serine dehydratase beta chain M634_19460 PF08264 Anticodon-binding domain of tRNA M634_19460 PF00133 tRNA synthetases class I (I, L, M and V) M634_19465 PF01464 Transglycosylase SLT domain M634_19485 PF00460 Flagella basal body rod protein M634_19490 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M634_19490 PF00460 Flagella basal body rod protein M634_19495 PF13860 FlgD Ig-like domain M634_19495 PF03963 Flagellar hook capping protein - N-terminal region M634_19495 PF13861 FlgD Tudor-like domain M634_19500 PF00460 Flagella basal body rod protein M634_19500 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M634_19500 PF07559 Flagellar basal body protein FlaE M634_19505 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M634_19505 PF00460 Flagella basal body rod protein M634_19510 PF00460 Flagella basal body rod protein M634_19510 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M634_19515 PF02107 Flagellar L-ring protein M634_19520 PF02119 Flagellar P-ring protein M634_19525 PF10135 Rod binding protein M634_19525 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase M634_19530 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M634_19530 PF00460 Flagella basal body rod protein M634_19535 PF00669 Bacterial flagellin N-terminal helical region M634_19555 PF01070 FMN-dependent dehydrogenase M634_19575 PF00581 Rhodanese-like domain M634_19580 PF00166 Chaperonin 10 Kd subunit M634_19585 PF00118 TCP-1/cpn60 chaperonin family M634_19595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_19595 PF03466 LysR substrate binding domain M634_19610 PF00440 Bacterial regulatory proteins, tetR family M634_19610 PF08359 YsiA-like protein, C-terminal region M634_19620 PF00149 Calcineurin-like phosphoesterase M634_19620 PF02872 5'-nucleotidase, C-terminal domain M634_19625 PF03060 Nitronate monooxygenase M634_19630 PF07971 Glycosyl hydrolase family 92 M634_19630 PF17678 Glycosyl hydrolase family 92 N-terminal domain M634_19635 PF17678 Glycosyl hydrolase family 92 N-terminal domain M634_19635 PF07971 Glycosyl hydrolase family 92 M634_19645 PF17678 Glycosyl hydrolase family 92 N-terminal domain M634_19645 PF07971 Glycosyl hydrolase family 92 M634_19650 PF17678 Glycosyl hydrolase family 92 N-terminal domain M634_19650 PF07971 Glycosyl hydrolase family 92 M634_19670 PF01625 Peptide methionine sulfoxide reductase M634_19670 PF01641 SelR domain M634_19675 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M634_19680 PF08220 DeoR-like helix-turn-helix domain M634_19680 PF00455 DeoR C terminal sensor domain M634_19690 PF00199 Catalase M634_19690 PF06628 Catalase-related immune-responsive M634_19700 PF00857 Isochorismatase family M634_19710 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family M634_19710 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain M634_19735 PF03466 LysR substrate binding domain M634_19735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_19740 PF01389 OmpA-like transmembrane domain M634_19740 PF00691 OmpA family M634_19750 PF06629 MltA-interacting protein MipA M634_19755 PF04170 NlpE N-terminal domain M634_19755 PF17185 NlpE C-terminal OB domain M634_19760 PF02001 Protein of unknown function DUF134 M634_19785 PF00009 Elongation factor Tu GTP binding domain M634_19785 PF03144 Elongation factor Tu domain 2 M634_19785 PF00679 Elongation factor G C-terminus M634_19785 PF03764 Elongation factor G, domain IV M634_19785 PF14492 Elongation Factor G, domain II M634_19790 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M634_19790 PF13378 Enolase C-terminal domain-like M634_19800 PF03466 LysR substrate binding domain M634_19800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_19815 PF09278 MerR, DNA binding M634_19815 PF00376 MerR family regulatory protein M634_19840 PF13091 PLD-like domain M634_19845 PF13533 Biotin-lipoyl like M634_19850 PF00873 AcrB/AcrD/AcrF family M634_19890 PF00005 ABC transporter M634_19890 PF08402 TOBE domain M634_19915 PF07702 UTRA domain M634_19915 PF00392 Bacterial regulatory proteins, gntR family M634_19920 PF02028 BCCT, betaine/carnitine/choline family transporter M634_19925 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 M634_19925 PF02837 Glycosyl hydrolases family 2, sugar binding domain M634_19925 PF00703 Glycosyl hydrolases family 2 M634_19925 PF02836 Glycosyl hydrolases family 2, TIM barrel domain M634_19930 PF00196 Bacterial regulatory proteins, luxR family M634_19940 PF07694 5TMR of 5TMR-LYT M634_19940 PF00990 Diguanylate cyclase, GGDEF domain M634_19955 PF00873 AcrB/AcrD/AcrF family M634_19960 PF13533 Biotin-lipoyl like M634_19975 PF13416 Bacterial extracellular solute-binding protein M634_19980 PF00579 tRNA synthetases class I (W and Y) M634_19995 PF02896 PEP-utilising enzyme, TIM barrel domain M634_19995 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain M634_19995 PF00391 PEP-utilising enzyme, mobile domain M634_20000 PF03618 Kinase/pyrophosphorylase M634_20005 PF00710 Asparaginase, N-terminal M634_20005 PF17763 Glutaminase/Asparaginase C-terminal domain M634_20015 PF03466 LysR substrate binding domain M634_20015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_20030 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) M634_20040 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term M634_20040 PF12833 Helix-turn-helix domain M634_20055 PF00107 Zinc-binding dehydrogenase M634_20055 PF08240 Alcohol dehydrogenase GroES-like domain M634_20060 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M634_20070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_20070 PF03466 LysR substrate binding domain M634_20075 PF03466 LysR substrate binding domain M634_20075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_20085 PF00270 DEAD/DEAH box helicase M634_20085 PF00271 Helicase conserved C-terminal domain M634_20105 PF00155 Aminotransferase class I and II M634_20110 PF01497 Periplasmic binding protein M634_20110 PF12833 Helix-turn-helix domain M634_20160 PF01872 RibD C-terminal domain M634_20165 PF02909 Tetracyclin repressor-like, C-terminal domain M634_20165 PF00440 Bacterial regulatory proteins, tetR family M634_20170 PF02798 Glutathione S-transferase, N-terminal domain M634_20180 PF00768 D-alanyl-D-alanine carboxypeptidase M634_20180 PF07943 Penicillin-binding protein 5, C-terminal domain M634_20195 PF00462 Glutaredoxin M634_20195 PF08534 Redoxin M634_20200 PF00962 Adenosine/AMP deaminase M634_20210 PF00313 'Cold-shock' DNA-binding domain M634_20215 PF05726 Pirin C-terminal cupin domain M634_20215 PF02678 Pirin M634_20220 PF01734 Patatin-like phospholipase M634_20230 PF01047 MarR family M634_20245 PF07690 Major Facilitator Superfamily M634_20255 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M634_20260 PF08019 Phosphoethanolamine transferase EptA/EptB M634_20260 PF00884 Sulfatase M634_20265 PF01219 Prokaryotic diacylglycerol kinase M634_20275 PF00672 HAMP domain M634_20275 PF00512 His Kinase A (phospho-acceptor) domain M634_20275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_20280 PF00486 Transcriptional regulatory protein, C terminal M634_20280 PF00072 Response regulator receiver domain M634_20285 PF00106 short chain dehydrogenase M634_20300 PF01323 DSBA-like thioredoxin domain M634_20315 PF00255 Glutathione peroxidase M634_20320 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase M634_20330 PF07690 Major Facilitator Superfamily M634_20340 PF01966 HD domain M634_20350 PF07969 Amidohydrolase family M634_20355 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin M634_20360 PF03448 MgtE intracellular N domain M634_20360 PF01769 Divalent cation transporter M634_20360 PF00571 CBS domain M634_20365 PF03109 ABC1 family M634_20370 PF00155 Aminotransferase class I and II M634_20370 PF00392 Bacterial regulatory proteins, gntR family M634_20375 PF13520 Amino acid permease M634_20380 PF01037 Lrp/AsnC ligand binding domain M634_20380 PF13404 AsnC-type helix-turn-helix domain M634_20385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_20385 PF03466 LysR substrate binding domain M634_20400 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M634_20400 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M634_20405 PF00512 His Kinase A (phospho-acceptor) domain M634_20405 PF00672 HAMP domain M634_20405 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M634_20405 PF00072 Response regulator receiver domain M634_20405 PF01627 Hpt domain M634_20405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_20410 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M634_20415 PF01554 MatE M634_20420 PF04363 Protein of unknown function (DUF496) M634_20435 PF04337 Protein of unknown function, DUF480 M634_20440 PF01541 GIY-YIG catalytic domain M634_20445 PF13407 Periplasmic binding protein domain M634_20450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_20450 PF00512 His Kinase A (phospho-acceptor) domain M634_20450 PF09308 LuxQ, periplasmic M634_20450 PF00072 Response regulator receiver domain M634_20460 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M634_20460 PF00529 HlyD membrane-fusion protein of T1SS M634_20480 PF01037 Lrp/AsnC ligand binding domain M634_20505 PF07549 SecD/SecF GG Motif M634_20505 PF02355 Protein export membrane protein M634_20505 PF13721 SecD export protein N-terminal TM region M634_20510 PF07549 SecD/SecF GG Motif M634_20510 PF02355 Protein export membrane protein M634_20525 PF00106 short chain dehydrogenase M634_20530 PF00108 Thiolase, N-terminal domain M634_20530 PF02803 Thiolase, C-terminal domain M634_20540 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus M634_20550 PF03264 NapC/NirT cytochrome c family, N-terminal region M634_20555 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) M634_20560 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M634_20560 PF00384 Molybdopterin oxidoreductase M634_20560 PF01568 Molydopterin dinucleotide binding domain M634_20570 PF13187 4Fe-4S dicluster domain M634_20570 PF12838 4Fe-4S dicluster domain M634_20575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_20575 PF07730 Histidine kinase M634_20575 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term M634_20575 PF00672 HAMP domain M634_20580 PF00072 Response regulator receiver domain M634_20580 PF00196 Bacterial regulatory proteins, luxR family M634_20595 PF01546 Peptidase family M20/M25/M40 M634_20595 PF07687 Peptidase dimerisation domain M634_20600 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M634_20605 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M634_20610 PF00873 AcrB/AcrD/AcrF family M634_20615 PF00672 HAMP domain M634_20615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M634_20615 PF12729 Four helix bundle sensory module for signal transduction M634_20620 PF00472 RF-1 domain M634_20625 PF13419 Haloacid dehalogenase-like hydrolase M634_20630 PF00691 OmpA family M634_20630 PF01389 OmpA-like transmembrane domain M634_20635 PF00793 DAHP synthetase I family M634_20640 PF00083 Sugar (and other) transporter M634_20640 PF07690 Major Facilitator Superfamily M634_20645 PF08447 PAS fold M634_20645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M634_20650 PF02779 Transketolase, pyrimidine binding domain M634_20650 PF02780 Transketolase, C-terminal domain M634_20650 PF00456 Transketolase, thiamine diphosphate binding domain M634_20655 PF00923 Transaldolase/Fructose-6-phosphate aldolase M634_20675 PF00704 Glycosyl hydrolases family 18 M634_20675 PF08329 Chitinase A, N-terminal domain M634_20680 PF03707 Bacterial signalling protein N terminal repeat M634_20680 PF00990 Diguanylate cyclase, GGDEF domain M634_20680 PF00563 EAL domain M634_20685 PF00581 Rhodanese-like domain M634_20705 PF00899 ThiF family M634_20710 PF03454 MoeA C-terminal region (domain IV) M634_20710 PF00994 Probable molybdopterin binding domain M634_20710 PF03453 MoeA N-terminal region (domain I and II) M634_20715 PF01227 GTP cyclohydrolase I M634_20720 PF01566 Natural resistance-associated macrophage protein M634_20735 PF00654 Voltage gated chloride channel M634_20750 PF00248 Aldo/keto reductase family M634_20755 PF00072 Response regulator receiver domain M634_20765 PF03853 YjeF-related protein N-terminus M634_20765 PF01256 Carbohydrate kinase M634_20770 PF00478 IMP dehydrogenase / GMP reductase domain M634_20775 PF13193 AMP-binding enzyme C-terminal domain M634_20775 PF00501 AMP-binding enzyme M634_20780 PF00766 Electron transfer flavoprotein FAD-binding domain M634_20780 PF01012 Electron transfer flavoprotein domain M634_20785 PF01012 Electron transfer flavoprotein domain M634_20800 PF00005 ABC transporter M634_20800 PF12399 Branched-chain amino acid ATP-binding cassette transporter M634_20825 PF00005 ABC transporter M634_20830 PF00501 AMP-binding enzyme M634_20830 PF14535 AMP-binding enzyme C-terminal domain M634_20845 PF00034 Cytochrome c M634_20855 PF13411 MerR HTH family regulatory protein M634_20860 PF02627 Carboxymuconolactone decarboxylase family M634_20870 PF02322 Cytochrome bd terminal oxidase subunit II M634_20875 PF01654 Cytochrome bd terminal oxidase subunit I M634_20880 PF00392 Bacterial regulatory proteins, gntR family M634_20880 PF00155 Aminotransferase class I and II M634_20885 PF12464 Maltose acetyltransferase M634_20885 PF14602 Hexapeptide repeat of succinyl-transferase M634_20900 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M634_20900 PF00512 His Kinase A (phospho-acceptor) domain M634_20900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_20900 PF01627 Hpt domain M634_20900 PF00072 Response regulator receiver domain M634_20900 PF00672 HAMP domain M634_20905 PF00682 HMGL-like M634_20910 PF02785 Biotin carboxylase C-terminal domain M634_20910 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M634_20910 PF00364 Biotin-requiring enzyme M634_20910 PF00289 Biotin carboxylase, N-terminal domain M634_20915 PF00378 Enoyl-CoA hydratase/isomerase M634_20920 PF01039 Carboxyl transferase domain M634_20925 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M634_20925 PF02770 Acyl-CoA dehydrogenase, middle domain M634_20925 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M634_20930 PF09278 MerR, DNA binding M634_20930 PF00376 MerR family regulatory protein M634_20935 PF02803 Thiolase, C-terminal domain M634_20935 PF00108 Thiolase, N-terminal domain M634_20940 PF00171 Aldehyde dehydrogenase family M634_20945 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M634_20945 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M634_20945 PF02770 Acyl-CoA dehydrogenase, middle domain M634_20950 PF00378 Enoyl-CoA hydratase/isomerase M634_20960 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M634_20960 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M634_20970 PF17151 Periplasmic sensor domain M634_20970 PF00990 Diguanylate cyclase, GGDEF domain M634_20975 PF13977 BetI-type transcriptional repressor, C-terminal M634_20975 PF00440 Bacterial regulatory proteins, tetR family M634_20980 PF00171 Aldehyde dehydrogenase family M634_20985 PF05199 GMC oxidoreductase M634_20985 PF00732 GMC oxidoreductase M634_20990 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M634_20995 PF00528 Binding-protein-dependent transport system inner membrane component M634_21000 PF00571 CBS domain M634_21000 PF00005 ABC transporter M634_21005 PF00881 Nitroreductase family M634_21015 PF01145 SPFH domain / Band 7 family M634_21015 PF16200 C-terminal region of band_7 M634_21025 PF03707 Bacterial signalling protein N terminal repeat M634_21025 PF13188 PAS domain M634_21025 PF00990 Diguanylate cyclase, GGDEF domain M634_21025 PF00563 EAL domain M634_21035 PF00034 Cytochrome c M634_21035 PF03150 Di-haem cytochrome c peroxidase M634_21040 PF09308 LuxQ, periplasmic M634_21040 PF00512 His Kinase A (phospho-acceptor) domain M634_21040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_21040 PF00072 Response regulator receiver domain M634_21055 PF04116 Fatty acid hydroxylase superfamily M634_21095 PF01048 Phosphorylase superfamily M634_21100 PF00563 EAL domain M634_21100 PF00990 Diguanylate cyclase, GGDEF domain M634_21105 PF05025 RbsD / FucU transport protein family M634_21110 PF00005 ABC transporter M634_21115 PF02653 Branched-chain amino acid transport system / permease component M634_21120 PF13407 Periplasmic binding protein domain M634_21125 PF00294 pfkB family carbohydrate kinase M634_21130 PF00356 Bacterial regulatory proteins, lacI family M634_21140 PF04973 Nicotinamide mononucleotide transporter M634_21145 PF01048 Phosphorylase superfamily M634_21155 PF01497 Periplasmic binding protein M634_21160 PF01032 FecCD transport family M634_21165 PF01032 FecCD transport family M634_21170 PF00005 ABC transporter M634_21175 PF13411 MerR HTH family regulatory protein M634_21185 PF07715 TonB-dependent Receptor Plug Domain M634_21185 PF00593 TonB dependent receptor M634_21215 PF12805 FUSC-like inner membrane protein yccS M634_21220 PF13361 UvrD-like helicase C-terminal domain M634_21220 PF00580 UvrD/REP helicase N-terminal domain M634_21220 PF12462 DNA helicase IV / RNA helicase N terminal M634_21225 PF02142 MGS-like domain M634_21230 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M634_21235 PF00072 Response regulator receiver domain M634_21235 PF01627 Hpt domain M634_21235 PF00672 HAMP domain M634_21235 PF00512 His Kinase A (phospho-acceptor) domain M634_21235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_21250 PF00072 Response regulator receiver domain M634_21250 PF00486 Transcriptional regulatory protein, C terminal M634_21255 PF00884 Sulfatase M634_21260 PF00884 Sulfatase M634_21270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_21270 PF03466 LysR substrate binding domain M634_21275 PF16385 Domain of unknown function M634_21275 PF00884 Sulfatase M634_21280 PF13186 Iron-sulfur cluster-binding domain M634_21280 PF04055 Radical SAM superfamily M634_21285 PF17863 AAA lid domain M634_21285 PF07726 ATPase family associated with various cellular activities (AAA) M634_21300 PF00092 von Willebrand factor type A domain M634_21315 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M634_21320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_21320 PF03466 LysR substrate binding domain M634_21325 PF00781 Diacylglycerol kinase catalytic domain M634_21330 PF04076 Bacterial OB fold (BOF) protein M634_21345 PF04055 Radical SAM superfamily M634_21345 PF13186 Iron-sulfur cluster-binding domain M634_21355 PF08774 VRR-NUC domain M634_21355 PF18081 Fanconi anemia-associated nuclease SAP domain M634_21370 PF01435 Peptidase family M48 M634_21375 PF04011 LemA family M634_21380 PF03606 C4-dicarboxylate anaerobic carrier M634_21400 PF00072 Response regulator receiver domain M634_21400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_21405 PF00155 Aminotransferase class I and II M634_21410 PF01926 50S ribosome-binding GTPase M634_21425 PF13276 HTH-like domain M634_21425 PF00665 Integrase core domain M634_21425 PF13333 Integrase core domain M634_21435 PF06965 Na+/H+ antiporter 1 M634_21440 PF00694 Aconitase C-terminal domain M634_21440 PF00330 Aconitase family (aconitate hydratase) M634_21450 PF00313 'Cold-shock' DNA-binding domain M634_21475 PF02423 Ornithine cyclodeaminase/mu-crystallin family M634_21480 PF01168 Alanine racemase, N-terminal domain M634_21480 PF14031 Putative serine dehydratase domain M634_21485 PF03466 LysR substrate binding domain M634_21485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_21490 PF00561 alpha/beta hydrolase fold M634_21500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_21500 PF03466 LysR substrate binding domain M634_21505 PF13333 Integrase core domain M634_21505 PF13276 HTH-like domain M634_21505 PF00665 Integrase core domain M634_21520 PF01752 Collagenase M634_21520 PF08453 Peptidase family M9 N-terminal M634_21520 PF04151 Bacterial pre-peptidase C-terminal domain M634_21530 PF12833 Helix-turn-helix domain M634_21535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_21535 PF03466 LysR substrate binding domain M634_21555 PF04972 BON domain M634_21555 PF00263 Bacterial type II and III secretion system protein M634_21555 PF13629 Pilus formation protein N terminal region M634_21570 PF00437 Type II/IV secretion system protein M634_21605 PF05736 OprF membrane domain M634_21605 PF00691 OmpA family M634_21615 PF03466 LysR substrate binding domain M634_21615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_21630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_21630 PF00072 Response regulator receiver domain M634_21630 PF00512 His Kinase A (phospho-acceptor) domain M634_21630 PF09456 RcsC Alpha-Beta-Loop (ABL) M634_21635 PF00563 EAL domain M634_21635 PF00990 Diguanylate cyclase, GGDEF domain M634_21635 PF13188 PAS domain M634_21635 PF03707 Bacterial signalling protein N terminal repeat M634_21640 PF00072 Response regulator receiver domain M634_21640 PF00196 Bacterial regulatory proteins, luxR family M634_21645 PF00990 Diguanylate cyclase, GGDEF domain M634_21655 PF00072 Response regulator receiver domain M634_21655 PF00196 Bacterial regulatory proteins, luxR family M634_21675 PF01584 CheW-like domain M634_21675 PF00072 Response regulator receiver domain M634_21690 PF00892 EamA-like transporter family M634_21705 PF01569 PAP2 superfamily M634_21715 PF04151 Bacterial pre-peptidase C-terminal domain M634_21715 PF02868 Thermolysin metallopeptidase, alpha-helical domain M634_21715 PF01447 Thermolysin metallopeptidase, catalytic domain M634_21715 PF03413 Peptidase propeptide and YPEB domain M634_21715 PF07504 Fungalysin/Thermolysin Propeptide Motif M634_21720 PF00893 Small Multidrug Resistance protein M634_21725 PF00892 EamA-like transporter family M634_21745 PF00171 Aldehyde dehydrogenase family M634_21750 PF00939 Sodium:sulfate symporter transmembrane region M634_21760 PF00989 PAS fold M634_21760 PF17203 Single cache domain 3 M634_21760 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain M634_21760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_21765 PF00072 Response regulator receiver domain M634_21765 PF12431 Transcriptional regulator M634_21775 PF13187 4Fe-4S dicluster domain M634_21775 PF01645 Conserved region in glutamate synthase M634_21785 PF00141 Peroxidase M634_21800 PF01757 Acyltransferase family M634_21810 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M634_21815 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M634_21835 PF00571 CBS domain M634_21835 PF01769 Divalent cation transporter M634_21835 PF03448 MgtE intracellular N domain M634_21870 PF01327 Polypeptide deformylase M634_21875 PF09278 MerR, DNA binding M634_21875 PF00376 MerR family regulatory protein M634_21885 PF02253 Phospholipase A1 M634_21905 PF00664 ABC transporter transmembrane region M634_21905 PF00005 ABC transporter M634_21910 PF00929 Exonuclease M634_21910 PF02811 PHP domain M634_21910 PF14579 Helix-hairpin-helix motif M634_21910 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M634_21910 PF11490 DNA polymerase III polC-type N-terminus II M634_21910 PF07733 Bacterial DNA polymerase III alpha NTPase domain M634_21915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_21915 PF03466 LysR substrate binding domain M634_21920 PF17848 Acetyl-coA carboxylase zinc finger domain M634_21920 PF01039 Carboxyl transferase domain M634_21960 PF01638 HxlR-like helix-turn-helix M634_21975 PF02347 Glycine cleavage system P-protein M634_21980 PF01597 Glycine cleavage H-protein M634_21985 PF00464 Serine hydroxymethyltransferase M634_21995 PF01571 Aminomethyltransferase folate-binding domain M634_21995 PF08669 Glycine cleavage T-protein C-terminal barrel domain M634_22015 PF00873 AcrB/AcrD/AcrF family M634_22025 PF02378 Phosphotransferase system, EIIC M634_22025 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M634_22030 PF00294 pfkB family carbohydrate kinase M634_22035 PF00381 PTS HPr component phosphorylation site M634_22035 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M634_22040 PF00356 Bacterial regulatory proteins, lacI family M634_22040 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M634_22060 PF00563 EAL domain M634_22060 PF01590 GAF domain M634_22060 PF00989 PAS fold M634_22060 PF00990 Diguanylate cyclase, GGDEF domain M634_22065 PF00528 Binding-protein-dependent transport system inner membrane component M634_22070 PF00497 Bacterial extracellular solute-binding proteins, family 3 M634_22075 PF00528 Binding-protein-dependent transport system inner membrane component M634_22080 PF00005 ABC transporter M634_22085 PF02887 Pyruvate kinase, alpha/beta domain M634_22085 PF00224 Pyruvate kinase, barrel domain M634_22090 PF07690 Major Facilitator Superfamily M634_22100 PF00512 His Kinase A (phospho-acceptor) domain M634_22100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_22100 PF00672 HAMP domain M634_22105 PF14532 Sigma-54 interaction domain M634_22105 PF02954 Bacterial regulatory protein, Fis family M634_22105 PF00072 Response regulator receiver domain M634_22115 PF00465 Iron-containing alcohol dehydrogenase M634_22120 PF06719 AraC-type transcriptional regulator N-terminus M634_22120 PF12833 Helix-turn-helix domain M634_22125 PF00704 Glycosyl hydrolases family 18 M634_22125 PF06483 Chitinase C M634_22130 PF00483 Nucleotidyl transferase M634_22135 PF01268 Formate--tetrahydrofolate ligase M634_22140 PF00294 pfkB family carbohydrate kinase M634_22155 PF11849 Domain of unknown function (DUF3369) M634_22160 PF13419 Haloacid dehalogenase-like hydrolase M634_22165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M634_22175 PF04336 Acyl carrier protein phosphodiesterase M634_22180 PF00271 Helicase conserved C-terminal domain M634_22180 PF00270 DEAD/DEAH box helicase M634_22185 PF12792 CSS motif domain associated with EAL M634_22185 PF00563 EAL domain M634_22200 PF01292 Prokaryotic cytochrome b561 M634_22205 PF04264 YceI-like domain M634_22210 PF01226 Formate/nitrite transporter M634_22215 PF03466 LysR substrate binding domain M634_22215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_22220 PF06496 Protein of unknown function (DUF1097) M634_22225 PF11398 Protein of unknown function (DUF2813) M634_22230 PF00149 Calcineurin-like phosphoesterase M634_22230 PF02872 5'-nucleotidase, C-terminal domain M634_22245 PF03741 Integral membrane protein TerC family M634_22260 PF12262 Bacterial virulence factor lipase N-terminal M634_22265 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) M634_22280 PF03061 Thioesterase superfamily M634_22290 PF12793 Sugar transport-related sRNA regulator N-term M634_22290 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M634_22315 PF00684 DnaJ central domain M634_22315 PF01556 DnaJ C terminal domain M634_22315 PF00226 DnaJ domain M634_22325 PF13188 PAS domain M634_22325 PF03707 Bacterial signalling protein N terminal repeat M634_22325 PF00990 Diguanylate cyclase, GGDEF domain M634_22325 PF00563 EAL domain M634_22330 PF12241 Trans-2-enoyl-CoA reductase catalytic region M634_22330 PF07055 Enoyl reductase FAD binding domain M634_22330 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase M634_22335 PF13472 GDSL-like Lipase/Acylhydrolase family M634_22340 PF00005 ABC transporter M634_22355 PF02626 Carboxyltransferase domain, subdomain A and B M634_22360 PF02682 Carboxyltransferase domain, subdomain C and D M634_22365 PF03746 LamB/YcsF family M634_22370 PF00563 EAL domain M634_22370 PF13426 PAS domain M634_22370 PF08448 PAS fold M634_22370 PF05231 MASE1 M634_22370 PF08447 PAS fold M634_22370 PF00990 Diguanylate cyclase, GGDEF domain M634_22375 PF16363 GDP-mannose 4,6 dehydratase M634_22385 PF07715 TonB-dependent Receptor Plug Domain M634_22385 PF00593 TonB dependent receptor M634_22385 PF04886 PT repeat M634_22390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_22390 PF03466 LysR substrate binding domain M634_22395 PF13607 Succinyl-CoA ligase like flavodoxin domain M634_22395 PF00583 Acetyltransferase (GNAT) family M634_22395 PF13380 CoA binding domain M634_22405 PF07478 D-ala D-ala ligase C-terminus M634_22405 PF01820 D-ala D-ala ligase N-terminus M634_22415 PF01253 Translation initiation factor SUI1 M634_22460 PF05707 Zonular occludens toxin (Zot) M634_22495 PF13333 Integrase core domain M634_22495 PF13276 HTH-like domain M634_22495 PF00665 Integrase core domain M634_22510 PF00582 Universal stress protein family M634_22520 PF00665 Integrase core domain M634_22520 PF13333 Integrase core domain M634_22520 PF13276 HTH-like domain M634_22525 PF03701 Uncharacterised protein family (UPF0181) M634_22540 PF00486 Transcriptional regulatory protein, C terminal M634_22540 PF00072 Response regulator receiver domain M634_22550 PF02233 NAD(P) transhydrogenase beta subunit M634_22555 PF01262 Alanine dehydrogenase/PNT, C-terminal domain M634_22555 PF05222 Alanine dehydrogenase/PNT, N-terminal domain M634_22555 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch M634_22570 PF00072 Response regulator receiver domain M634_22570 PF00990 Diguanylate cyclase, GGDEF domain M634_22580 PF00990 Diguanylate cyclase, GGDEF domain M634_22580 PF00360 Phytochrome region M634_22580 PF01590 GAF domain M634_22580 PF00563 EAL domain M634_22590 PF03459 TOBE domain M634_22590 PF00005 ABC transporter M634_22595 PF00528 Binding-protein-dependent transport system inner membrane component M634_22605 PF07685 CobB/CobQ-like glutamine amidotransferase domain M634_22610 PF04076 Bacterial OB fold (BOF) protein M634_22625 PF18030 RimK PreATP-grasp domain M634_22625 PF08443 RimK-like ATP-grasp domain M634_22630 PF00155 Aminotransferase class I and II M634_22635 PF12833 Helix-turn-helix domain M634_22640 PF01554 MatE M634_22650 PF03477 ATP cone domain M634_22650 PF13597 Anaerobic ribonucleoside-triphosphate reductase M634_22660 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M634_22665 PF00873 AcrB/AcrD/AcrF family M634_22675 PF04143 Sulphur transport M634_22690 PF07992 Pyridine nucleotide-disulphide oxidoreductase M634_22690 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M634_22695 PF00384 Molybdopterin oxidoreductase M634_22700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_22700 PF03466 LysR substrate binding domain M634_22705 PF02634 FdhD/NarQ family M634_22715 PF07690 Major Facilitator Superfamily M634_22720 PF00072 Response regulator receiver domain M634_22720 PF00196 Bacterial regulatory proteins, luxR family M634_22725 PF05231 MASE1 M634_22725 PF07730 Histidine kinase M634_22725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M634_22730 PF07690 Major Facilitator Superfamily M634_22735 PF01238 Phosphomannose isomerase type I M634_22755 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M634_22755 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M634_22760 PF00085 Thioredoxin M634_22765 PF07690 Major Facilitator Superfamily M634_22780 PF11756 Nitrous oxide-stimulated promoter M634_22795 PF00593 TonB dependent receptor M634_22795 PF07715 TonB-dependent Receptor Plug Domain M634_22810 PF03605 Anaerobic c4-dicarboxylate membrane transporter M634_22825 PF14824 Sirohaem biosynthesis protein central M634_22825 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M634_22825 PF10414 Sirohaem synthase dimerisation region M634_22830 PF01226 Formate/nitrite transporter M634_22835 PF13806 Rieske-like [2Fe-2S] domain M634_22840 PF18267 Rubredoxin NAD+ reductase C-terminal domain M634_22840 PF07992 Pyridine nucleotide-disulphide oxidoreductase M634_22840 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M634_22840 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M634_22840 PF04324 BFD-like [2Fe-2S] binding domain M634_22845 PF14760 Rnk N-terminus M634_22845 PF01272 Transcription elongation factor, GreA/GreB, C-term M634_22885 PF13462 Thioredoxin M634_22885 PF06965 Na+/H+ antiporter 1 M634_22905 PF09154 Domain of unknown function (DUF1939) M634_22905 PF00128 Alpha amylase, catalytic domain M634_22920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M634_22920 PF00672 HAMP domain M634_22925 PF00842 Alanine racemase, C-terminal domain M634_22925 PF01168 Alanine racemase, N-terminal domain M634_22945 PF01565 FAD binding domain M634_22945 PF09330 D-lactate dehydrogenase, membrane binding M634_22950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_22950 PF03466 LysR substrate binding domain M634_22965 PF05762 VWA domain containing CoxE-like protein M634_22970 PF17868 AAA lid domain M634_22970 PF12592 Protein of unknown function (DUF3763) M634_22970 PF07728 AAA domain (dynein-related subfamily) M634_22980 PF01212 Beta-eliminating lyase M634_22985 PF00034 Cytochrome c M634_22990 PF03606 C4-dicarboxylate anaerobic carrier M634_23000 PF07690 Major Facilitator Superfamily M634_23010 PF08212 Lipocalin-like domain M634_23030 PF13476 AAA domain M634_23035 PF12320 Type 5 capsule protein repressor C-terminal domain M634_23035 PF00149 Calcineurin-like phosphoesterase M634_23050 PF04717 Type VI secretion system, phage-baseplate injector M634_23050 PF16671 Actin cross-linking domain M634_23060 PF00004 ATPase family associated with various cellular activities (AAA) M634_23060 PF07724 AAA domain (Cdc48 subfamily) M634_23060 PF17871 AAA lid domain M634_23060 PF10431 C-terminal, D2-small domain, of ClpB protein M634_23120 PF00691 OmpA family M634_23120 PF13677 Membrane MotB of proton-channel complex MotA/MotB M634_23145 PF03793 PASTA domain M634_23145 PF00069 Protein kinase domain M634_23175 PF00440 Bacterial regulatory proteins, tetR family M634_23175 PF08361 MAATS-type transcriptional repressor, C-terminal region M634_23185 PF08376 Nitrate and nitrite sensing M634_23185 PF03861 ANTAR domain M634_23190 PF01738 Dienelactone hydrolase family M634_23195 PF00591 Glycosyl transferase family, a/b domain M634_23195 PF02885 Glycosyl transferase family, helical bundle domain M634_23200 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M634_23200 PF10414 Sirohaem synthase dimerisation region M634_23200 PF14824 Sirohaem biosynthesis protein central M634_23220 PF03222 Tryptophan/tyrosine permease family M634_23230 PF00072 Response regulator receiver domain M634_23230 PF00990 Diguanylate cyclase, GGDEF domain M634_23240 PF00082 Subtilase family M634_23240 PF01483 Proprotein convertase P-domain M634_23250 PF00245 Alkaline phosphatase M634_23265 PF00486 Transcriptional regulatory protein, C terminal M634_23265 PF00072 Response regulator receiver domain M634_23290 PF04314 Copper chaperone PCu(A)C M634_23295 PF00012 Hsp70 protein M634_23310 PF00676 Dehydrogenase E1 component M634_23315 PF02780 Transketolase, C-terminal domain M634_23315 PF02779 Transketolase, pyrimidine binding domain M634_23320 PF02817 e3 binding domain M634_23320 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M634_23320 PF00364 Biotin-requiring enzyme M634_23330 PF02798 Glutathione S-transferase, N-terminal domain M634_23330 PF00043 Glutathione S-transferase, C-terminal domain M634_23335 PF03466 LysR substrate binding domain M634_23335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_23345 PF00528 Binding-protein-dependent transport system inner membrane component M634_23350 PF00528 Binding-protein-dependent transport system inner membrane component M634_23355 PF00497 Bacterial extracellular solute-binding proteins, family 3 M634_23360 PF00005 ABC transporter M634_23370 PF01565 FAD binding domain M634_23370 PF08031 Berberine and berberine like M634_23375 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M634_23390 PF01040 UbiA prenyltransferase family M634_23400 PF00510 Cytochrome c oxidase subunit III M634_23405 PF00115 Cytochrome C and Quinol oxidase polypeptide I M634_23410 PF06481 COX Aromatic Rich Motif M634_23410 PF00116 Cytochrome C oxidase subunit II, periplasmic domain M634_23420 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M634_23420 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M634_23425 PF00378 Enoyl-CoA hydratase/isomerase M634_23430 PF00378 Enoyl-CoA hydratase/isomerase M634_23440 PF00171 Aldehyde dehydrogenase family M634_23445 PF02803 Thiolase, C-terminal domain M634_23445 PF00108 Thiolase, N-terminal domain M634_23450 PF09278 MerR, DNA binding M634_23450 PF00376 MerR family regulatory protein M634_23455 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M634_23455 PF02770 Acyl-CoA dehydrogenase, middle domain M634_23455 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M634_23460 PF01039 Carboxyl transferase domain M634_23465 PF00378 Enoyl-CoA hydratase/isomerase M634_23470 PF00682 HMGL-like M634_23475 PF10063 Uncharacterized integral membrane protein (DUF2301) M634_23485 PF08447 PAS fold M634_23485 PF13426 PAS domain M634_23485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M634_23490 PF00871 Acetokinase family M634_23495 PF00990 Diguanylate cyclase, GGDEF domain M634_23495 PF13426 PAS domain M634_23495 PF00563 EAL domain M634_23500 PF00270 DEAD/DEAH box helicase M634_23500 PF00271 Helicase conserved C-terminal domain M634_23500 PF03880 DbpA RNA binding domain M634_23505 PF00773 RNB domain M634_23505 PF00575 S1 RNA binding domain M634_23505 PF08206 Ribonuclease B OB domain M634_23510 PF12833 Helix-turn-helix domain M634_23520 PF12849 PBP superfamily domain M634_23535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_23535 PF03466 LysR substrate binding domain M634_23540 PF13186 Iron-sulfur cluster-binding domain M634_23540 PF04055 Radical SAM superfamily M634_23545 PF00884 Sulfatase M634_23550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_23550 PF03466 LysR substrate binding domain M634_23560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M634_23560 PF00672 HAMP domain M634_23560 PF12729 Four helix bundle sensory module for signal transduction M634_23565 PF00005 ABC transporter M634_23570 PF12792 CSS motif domain associated with EAL M634_23570 PF00563 EAL domain M634_23590 PF00270 DEAD/DEAH box helicase M634_23590 PF00271 Helicase conserved C-terminal domain M634_23595 PF02492 CobW/HypB/UreG, nucleotide-binding domain M634_23595 PF07683 Cobalamin synthesis protein cobW C-terminal domain M634_23605 PF01470 Pyroglutamyl peptidase M634_23615 PF00291 Pyridoxal-phosphate dependent enzyme M634_23620 PF09905 DNA-binding protein VF530 M634_23625 PF00270 DEAD/DEAH box helicase M634_23625 PF00271 Helicase conserved C-terminal domain M634_23630 PF12843 Putative quorum-sensing-regulated virulence factor M634_23650 PF01329 Pterin 4 alpha carbinolamine dehydratase M634_23655 PF00351 Biopterin-dependent aromatic amino acid hydroxylase M634_23660 PF13193 AMP-binding enzyme C-terminal domain M634_23660 PF00501 AMP-binding enzyme M634_23670 PF03466 LysR substrate binding domain M634_23670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_23695 PF00892 EamA-like transporter family M634_23710 PF00465 Iron-containing alcohol dehydrogenase M634_23715 PF07995 Glucose / Sorbosone dehydrogenase M634_23725 PF00210 Ferritin-like domain M634_23730 PF00672 HAMP domain M634_23730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M634_23730 PF17200 Single Cache domain 2 M634_23745 PF12704 MacB-like periplasmic core domain M634_23745 PF00005 ABC transporter M634_23745 PF02687 FtsX-like permease family M634_23750 PF02687 FtsX-like permease family M634_23750 PF12704 MacB-like periplasmic core domain M634_23750 PF00005 ABC transporter M634_23765 PF00990 Diguanylate cyclase, GGDEF domain M634_23770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M634_23770 PF13426 PAS domain M634_23770 PF08447 PAS fold M634_23775 PF03889 Alternative ribosome-rescue factor A M634_23785 PF00313 'Cold-shock' DNA-binding domain M634_23815 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M634_23815 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M634_23820 PF01040 UbiA prenyltransferase family M634_23825 PF02628 Cytochrome oxidase assembly protein M634_23845 PF00510 Cytochrome c oxidase subunit III M634_23850 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 M634_23855 PF00115 Cytochrome C and Quinol oxidase polypeptide I M634_23860 PF00116 Cytochrome C oxidase subunit II, periplasmic domain M634_23860 PF02790 Cytochrome C oxidase subunit II, transmembrane domain M634_23865 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M634_23865 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M634_23865 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M634_23865 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M634_23875 PF01810 LysE type translocator M634_23880 PF12833 Helix-turn-helix domain M634_23895 PF01557 Fumarylacetoacetate (FAA) hydrolase family M634_23905 PF00267 Gram-negative porin M634_23910 PF00892 EamA-like transporter family M634_23915 PF00462 Glutaredoxin M634_23930 PF07690 Major Facilitator Superfamily M634_23935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_23935 PF03466 LysR substrate binding domain M634_23940 PF08447 PAS fold M634_23940 PF08448 PAS fold M634_23940 PF00990 Diguanylate cyclase, GGDEF domain M634_23940 PF00563 EAL domain M634_23945 PF01476 LysM domain M634_23945 PF01551 Peptidase family M23 M634_23945 PF08525 Opacity-associated protein A N-terminal motif M634_23970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M634_23970 PF00672 HAMP domain M634_23970 PF02743 Cache domain M634_23980 PF03222 Tryptophan/tyrosine permease family M634_24015 PF08240 Alcohol dehydrogenase GroES-like domain M634_24015 PF00107 Zinc-binding dehydrogenase M634_24020 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M634_24020 PF02378 Phosphotransferase system, EIIC M634_24025 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M634_24045 PF01758 Sodium Bile acid symporter family M634_24055 PF01161 Phosphatidylethanolamine-binding protein M634_24060 PF02567 Phenazine biosynthesis-like protein M634_24065 PF10282 Lactonase, 7-bladed beta-propeller M634_24070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M634_24070 PF00672 HAMP domain M634_24070 PF17200 Single Cache domain 2 M634_24085 PF00005 ABC transporter M634_24105 PF01568 Molydopterin dinucleotide binding domain M634_24105 PF00384 Molybdopterin oxidoreductase M634_24105 PF12838 4Fe-4S dicluster domain M634_24105 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M634_24105 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region M634_24125 PF00873 AcrB/AcrD/AcrF family M634_24145 PF00990 Diguanylate cyclase, GGDEF domain M634_24145 PF13185 GAF domain M634_24155 PF13302 Acetyltransferase (GNAT) domain M634_24165 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) M634_24170 PF00873 AcrB/AcrD/AcrF family M634_24175 PF13533 Biotin-lipoyl like M634_24190 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain M634_24190 PF00326 Prolyl oligopeptidase family M634_24195 PF12848 ABC transporter M634_24195 PF16326 ABC transporter C-terminal domain M634_24195 PF00005 ABC transporter M634_24200 PF00582 Universal stress protein family M634_24205 PF02525 Flavodoxin-like fold M634_24210 PF00999 Sodium/hydrogen exchanger family M634_24210 PF02254 TrkA-N domain M634_24225 PF00128 Alpha amylase, catalytic domain M634_24235 PF04151 Bacterial pre-peptidase C-terminal domain M634_24235 PF01752 Collagenase M634_24235 PF08453 Peptidase family M9 N-terminal M634_24255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M634_24255 PF03466 LysR substrate binding domain M634_24265 PF00210 Ferritin-like domain M634_24270 PF00141 Peroxidase M634_24290 PF00082 Subtilase family M634_24295 PF13091 PLD-like domain M634_24295 PF13087 AAA domain M634_24310 PF00072 Response regulator receiver domain M634_24310 PF01584 CheW-like domain M634_24320 PF01243 Pyridoxamine 5'-phosphate oxidase M634_24325 PF06228 Haem utilisation ChuX/HutX M634_24330 PF04055 Radical SAM superfamily M634_24335 PF03544 Gram-negative bacterial TonB protein C-terminal M634_24340 PF01618 MotA/TolQ/ExbB proton channel family M634_24345 PF02472 Biopolymer transport protein ExbD/TolR M634_24355 PF01032 FecCD transport family M634_24360 PF00005 ABC transporter M634_24400 PF01467 Cytidylyltransferase-like M634_24405 PF02540 NAD synthase M634_24410 PF03476 MOSC N-terminal beta barrel domain M634_24410 PF00111 2Fe-2S iron-sulfur cluster binding domain M634_24410 PF03473 MOSC domain M634_24410 PF00111 2Fe-2S iron-sulfur cluster binding domain M634_24410 PF03473 MOSC domain M634_24410 PF03476 MOSC N-terminal beta barrel domain M634_24415 PF01679 Proteolipid membrane potential modulator M634_24420 PF01979 Amidohydrolase family M634_24425 PF05661 Protein of unknown function (DUF808) M634_24445 PF05853 beta-keto acid cleavage enzyme M634_24460 PF02803 Thiolase, C-terminal domain M634_24460 PF00108 Thiolase, N-terminal domain M634_24465 PF13737 Transposase DDE domain M634_24475 PF00664 ABC transporter transmembrane region M634_24475 PF00005 ABC transporter M634_24475 PF03412 Peptidase C39 family M634_24480 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) M634_24480 PF08339 RTX C-terminal domain M634_24480 PF02382 N-terminal domain in RTX protein M634_24485 PF02794 RTX toxin acyltransferase family M634_24505 PF00872 Transposase, Mutator family M634_24535 PF03347 Vibrio thermostable direct hemolysin M634_24540 PF13737 Transposase DDE domain M634_24545 PF02492 CobW/HypB/UreG, nucleotide-binding domain M634_24550 PF01730 UreF M634_24555 PF05194 UreE urease accessory protein, C-terminal domain M634_24555 PF02814 UreE urease accessory protein, N-terminal domain M634_24560 PF01979 Amidohydrolase family M634_24560 PF00449 Urease alpha-subunit, N-terminal domain M634_24565 PF00699 Urease beta subunit M634_24570 PF00547 Urease, gamma subunit M634_24575 PF01774 UreD urease accessory protein M634_24580 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M634_24585 PF00528 Binding-protein-dependent transport system inner membrane component M634_24590 PF12911 N-terminal TM domain of oligopeptide transport permease C M634_24590 PF00528 Binding-protein-dependent transport system inner membrane component M634_24595 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M634_24595 PF00005 ABC transporter M634_24600 PF00005 ABC transporter M634_24605 PF12833 Helix-turn-helix domain M634_24610 PF13737 Transposase DDE domain M634_24620 PF00816 H-NS histone family M634_24625 PF13402 Peptidase M60, enhancin and enhancin-like M634_24625 PF17291 N-terminal domain of M60-like peptidases M634_24625 PF13322 Domain of unknown function (DUF4092) M634_24645 PF00892 EamA-like transporter family M634_24650 PF13006 Insertion element 4 transposase N-terminal M634_24650 PF01609 Transposase DDE domain M634_24695 PF18269 T3SS EscN ATPase C-terminal domain M634_24695 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M634_24695 PF02874 ATP synthase alpha/beta family, beta-barrel domain M634_24715 PF00813 FliP family M634_24725 PF00486 Transcriptional regulatory protein, C terminal M634_24755 PF01312 FlhB HrpN YscU SpaS Family M634_24760 PF00771 FHIPEP family