locus-tag class description IPR008254 Flavodoxin/nitric oxide synthase IPR029039 Flavoprotein-like superfamily IPR031168 TrmE-type guanine nucleotide-binding domain IPR018948 GTP-binding protein TrmE, N-terminal IPR006073 GTP binding domain IPR004520 tRNA modification GTPase MnmE IPR027368 tRNA modification GTPase MnmE domain 2 IPR025867 MnmE, helical domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR005225 Small GTP-binding protein domain IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 IPR003593 AAA+ ATPase domain IPR001957 Chromosomal replication control, initiator DnaA IPR020591 Chromosomal replication control, initiator DnaA-like IPR018312 Chromosomal replication control, initiator DnaA, conserved site IPR013317 Chromosomal replication initiator protein DnaA IPR013159 Chromosomal replication initiator, DnaA C-terminal IPR024633 DnaA N-terminal domain IPR038454 DnaA, N-terminal domain superfamily IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR010921 Trp repressor/replication initiator IPR033417 Periplasmic sensor domain CHASE8 IPR000160 GGDEF domain IPR003660 HAMP domain IPR029787 Nucleotide cyclase IPR033417 Periplasmic sensor domain CHASE8 IPR000160 GGDEF domain IPR003660 HAMP domain IPR029787 Nucleotide cyclase IPR029028 Alpha/beta knot methyltransferases IPR029064 50S ribosomal protein L30e-like IPR001537 tRNA/rRNA methyltransferase, SpoU type IPR013123 RNA 2-O ribose methyltransferase, substrate binding IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site IPR000813 7Fe ferredoxin IPR022569 Ferredoxin, C-terminal IPR036188 FAD/NAD(P)-binding domain superfamily IPR028348 FAD dependent protein IPR013785 Aldolase-type TIM barrel IPR000644 CBS domain IPR005990 Inosine-5'-monophosphate dehydrogenase IPR015875 IMP dehydrogenase / GMP reductase, conserved site IPR001093 IMP dehydrogenase/GMP reductase IPR023299 P-type ATPase, cytoplasmic domain N IPR018303 P-type ATPase, phosphorylation site IPR023298 P-type ATPase, transmembrane domain superfamily IPR008250 P-type ATPase, A domain superfamily IPR036412 HAD-like superfamily IPR023214 HAD superfamily IPR017969 Heavy-metal-associated, conserved site IPR006121 Heavy metal-associated domain, HMA IPR036163 Heavy metal-associated domain superfamily IPR027256 P-type ATPase, subfamily IB IPR001757 P-type ATPase IPR018016 Nucleoside phosphorylase, conserved site IPR000845 Nucleoside phosphorylase domain IPR035994 Nucleoside phosphorylase superfamily IPR010058 Uridine phosphorylase IPR002549 Transmembrane protein TqsA-like IPR004090 Chemotaxis methyl-accepting receptor IPR003660 HAMP domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004090 Chemotaxis methyl-accepting receptor IPR003660 HAMP domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004090 Chemotaxis methyl-accepting receptor IPR003660 HAMP domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004090 Chemotaxis methyl-accepting receptor IPR003660 HAMP domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004090 Chemotaxis methyl-accepting receptor IPR003660 HAMP domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004090 Chemotaxis methyl-accepting receptor IPR003660 HAMP domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004090 Chemotaxis methyl-accepting receptor IPR003660 HAMP domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR019808 Histidine triad, conserved site IPR001310 Histidine triad (HIT) protein IPR011146 HIT-like domain IPR036265 HIT-like superfamily IPR014094 Penicillin-binding protein activator LpoB IPR012640 Membrane lipoprotein, lipid attachment site IPR029058 Alpha/Beta hydrolase fold IPR022987 Uncharacterised protein family UPF0227 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA IPR036188 FAD/NAD(P)-binding domain superfamily IPR023753 FAD/NAD(P)-binding domain IPR001633 EAL domain IPR035919 EAL domain superfamily IPR000160 GGDEF domain IPR005330 MHYT domain IPR029787 Nucleotide cyclase IPR001633 EAL domain IPR035919 EAL domain superfamily IPR000160 GGDEF domain IPR005330 MHYT domain IPR029787 Nucleotide cyclase IPR001633 EAL domain IPR035919 EAL domain superfamily IPR000160 GGDEF domain IPR005330 MHYT domain IPR029787 Nucleotide cyclase IPR001633 EAL domain IPR035919 EAL domain superfamily IPR000160 GGDEF domain IPR005330 MHYT domain IPR029787 Nucleotide cyclase IPR001633 EAL domain IPR035919 EAL domain superfamily IPR000160 GGDEF domain IPR005330 MHYT domain IPR029787 Nucleotide cyclase IPR036101 CarD-like/TRCF domain superfamily IPR003711 CarD-like/TRCF domain IPR011545 DEAD/DEAH box helicase domain IPR014001 Helicase superfamily 1/2, ATP-binding domain IPR001650 Helicase, C-terminal IPR004576 Transcription-repair coupling factor IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR037235 TRCF-like, C-terminal domain IPR005118 Transcription-repair-coupling factor, C-terminal domain IPR041471 UvrB, interaction domain IPR003838 ABC transporter permease protein domain IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E IPR025857 MacB-like periplasmic core domain IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR015854 ABC transporter, lipoprotein release, LolD IPR011924 Lipoprotein releasing system, ATP-binding protein IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR003838 ABC transporter permease protein domain IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E IPR011926 Lipoprotein-releasing system transmembrane protein LolE, gammaproteobacteria type IPR025857 MacB-like periplasmic core domain IPR035681 ComA-like, MBL domain IPR004477 ComEC/Rec2-related protein IPR004797 Competence protein ComEC/Rec2 IPR025405 Domain of unknown function DUF4131 IPR001279 Metallo-beta-lactamase IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like IPR003593 AAA+ ATPase domain IPR011527 ABC transporter type 1, transmembrane domain IPR036640 ABC transporter type 1, transmembrane domain superfamily IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR011917 ABC transporter, lipid A export, MsbA IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR039421 Type I protein exporter IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR003758 Tetraacyldisaccharide 4'-kinase IPR003329 Acylneuraminate cytidylyltransferase IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase IPR029044 Nucleotide-diphospho-sugar transferases IPR007390 Sporulation stage V, protein R IPR006698 Uncharacterised protein family UPF0229 IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR013153 PrkA AAA domain IPR010650 PrkA C-terminal domain IPR016230 Serine-protein kinase, PrkA IPR005587 Uncharacterised protein family UPF0304, YfbU IPR023146 YfbU, alpha-helical bundle domain superfamily IPR023145 YfbU, helix-hairpin domain superfamily IPR013785 Aldolase-type TIM barrel IPR034457 Organic radical-activating enzymes IPR012839 Organic radical enzyme activase IPR012838 Pyruvate formate-lyase 1 activating enzyme IPR034465 Pyruvate formate-lyase activase IPR001989 Radical-activating enzyme, conserved site IPR007197 Radical SAM IPR003798 DNA recombination RmuC IPR005949 Formate acetyltransferase IPR019777 Formate C-acetyltransferase glycine radical, conserved site IPR001150 Glycine radical domain IPR004184 Pyruvate formate lyase domain IPR003593 AAA+ ATPase domain IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter IPR018313 Solute-binding protein family 3, conserved site IPR001638 Solute-binding protein family 3/N-terminal domain of MltF IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain IPR030199 Histidine transport system permease protein HisQ IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR004033 UbiE/COQ5 methyltransferase IPR023576 UbiE/COQ5 methyltransferase, conserved site IPR004808 AP endonuclease 1 IPR020847 AP endonuclease 1, binding site IPR020848 AP endonuclease 1, conserved site IPR036691 Endonuclease/exonuclease/phosphatase superfamily IPR005135 Endonuclease/exonuclease/phosphatase IPR037493 Exodeoxyribonuclease III-like IPR019630 Protein of unknown function DUF2496, YbaM-related IPR038338 PriB/PriC superfamily IPR010890 Primosomal replication PriB/PriC IPR002781 Transmembrane protein TauE-like IPR006555 ATP-dependent helicase, C-terminal IPR010614 DEAD2 IPR039000 ATP-dependent DNA helicase DinG IPR014013 Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type IPR001650 Helicase, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR018635 Uncharacterised protein family UPF0319 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain IPR020103 Pseudouridine synthase, catalytic domain superfamily IPR006145 Pseudouridine synthase, RsuA/RluA IPR000748 Pseudouridine synthase, RsuA/RluB/E/F IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric IPR012156 Cold shock, CspA IPR011129 Cold shock domain IPR019844 Cold-shock (CSD) domain IPR002059 Cold-shock protein, DNA-binding IPR012751 CspD, cold shock IPR012340 Nucleic acid-binding, OB-fold IPR003033 SCP2 sterol-binding domain IPR036527 SCP2 sterol-binding domain superfamily IPR038989 Ubiquinone biosynthesis protein UbiJ IPR022935 ATP-dependent Clp protease adaptor protein ClpS IPR003769 Adaptor protein ClpS, core IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like IPR003593 AAA+ ATPase domain IPR003959 ATPase, AAA-type, core IPR019489 Clp ATPase, C-terminal IPR036628 Clp, N-terminal domain superfamily IPR004176 Clp, N-terminal IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA IPR001270 ClpA/B family IPR018368 ClpA/B, conserved site 1 IPR028299 ClpA/B, conserved site 2 IPR041546 ClpA/ClpB, AAA lid domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR012340 Nucleic acid-binding, OB-fold IPR006196 RNA-binding domain, S1, IF1 type IPR022967 RNA-binding domain, S1 IPR004368 Translation initiation factor IF-1 IPR016181 Acyl-CoA N-acyltransferase IPR017138 Aspartate/glutamate leucyltransferase IPR030700 N-end rule aminoacyl transferase IPR007472 N-end rule aminoacyl transferase, C-terminal IPR007471 N-end aminoacyl transferase, N-terminal IPR016181 Acyl-CoA N-acyltransferase IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase IPR042203 Leucyl/phenylalanyl-tRNA-protein transferase, C-terminal IPR001986 Enolpyruvate transferase domain IPR036968 Enolpyruvate transferase domain superfamily IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta IPR019633 Protein of unknown function DUF2498 IPR038191 YciN superfamily IPR000380 DNA topoisomerase, type IA IPR003601 DNA topoisomerase, type IA, domain 2 IPR023406 DNA topoisomerase, type IA, active site IPR013497 DNA topoisomerase, type IA, central IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 IPR023405 DNA topoisomerase, type IA, core domain IPR003602 DNA topoisomerase, type IA, DNA-binding domain IPR013498 DNA topoisomerase, type IA, zn finger IPR005733 DNA topoisomerase I, bacterial-type IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type IPR028612 DNA topoisomerase I, type IA IPR006171 TOPRIM domain IPR034149 DNA topoisomerase 1, TOPRIM domain IPR011009 Protein kinase-like domain superfamily IPR010232 Probable protein kinase UbiB IPR004147 UbiB domain IPR011831 Glucose-1-phosphate adenylyltransferase IPR005836 ADP-glucose pyrophosphorylase, conserved site IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial IPR005835 Nucleotidyl transferase domain IPR029044 Nucleotide-diphospho-sugar transferases IPR011004 Trimeric LpxA-like superfamily IPR001296 Glycosyl transferase, family 1 IPR011835 Bacterial/plant glycogen synthase IPR013534 Starch synthase, catalytic domain IPR007077 TfoX, C-terminal IPR007076 TfoX, N-terminal IPR026256 Transcriptional regulator, TfoX/Sxy-type IPR000843 LacI-type HTH domain IPR010982 Lambda repressor-like, DNA-binding domain superfamily IPR028082 Periplasmic binding protein-like I IPR023588 Transcription regulator HTH, PurR IPR023069 Chaperone TorD IPR020945 DMSO/Nitrate reductase chaperone IPR036386 HscB, C-terminal domain superfamily IPR036411 TorD-like superfamily IPR011006 CheY-like superfamily IPR001867 OmpR/PhoB-type DNA-binding domain IPR001789 Signal transduction response regulator, receiver domain IPR039420 Transcriptional regulatory protein WalR-like IPR036388 Winged helix-like DNA-binding domain superfamily IPR003369 Sec-independent protein translocase protein TatA/B/E IPR006312 Sec-independent protein translocase protein TatA/E IPR003848 Domain of unknown function DUF218 IPR033664 tRNA 5-carboxymethoxyuridine methyltransferase IPR025714 Methyltransferase domain IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR005582 Chromosome partition protein MukF IPR033441 Chromosome partition protein MukF, C-terminal domain IPR038198 MukF, C-terminal domain superfamily IPR033440 Chromosome partition protein MukF, middle domain IPR036141 MukF, middle domain superfamily IPR033439 Chromosome partition protein MukF, winged-helix domain IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR042037 MukE, C-terminal domain IPR042038 MukE, N-terminal domain IPR007385 Prokaryotic chromosome segregation/condensation protein MukE IPR012090 Chromosome partition protein MukB IPR032520 MukB, hinge domain IPR007406 MukB, N-terminal domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR011761 ATP-grasp fold IPR013651 ATP-grasp fold, RimK-type IPR013815 ATP-grasp fold, subdomain 1 IPR023533 Ribosomal protein S6--L-glutamate ligase RimK IPR041107 RimK, PreATP-grasp domain IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX IPR011761 ATP-grasp fold IPR013651 ATP-grasp fold, RimK-type IPR013815 ATP-grasp fold, subdomain 1 IPR021109 Aspartic peptidase domain superfamily IPR023533 Ribosomal protein S6--L-glutamate ligase RimK IPR041107 RimK, PreATP-grasp domain IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX IPR011761 ATP-grasp fold IPR013651 ATP-grasp fold, RimK-type IPR013815 ATP-grasp fold, subdomain 1 IPR021109 Aspartic peptidase domain superfamily IPR023533 Ribosomal protein S6--L-glutamate ligase RimK IPR041107 RimK, PreATP-grasp domain IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX IPR011761 ATP-grasp fold IPR013651 ATP-grasp fold, RimK-type IPR013815 ATP-grasp fold, subdomain 1 IPR021109 Aspartic peptidase domain superfamily IPR023533 Ribosomal protein S6--L-glutamate ligase RimK IPR041107 RimK, PreATP-grasp domain IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX IPR003369 Sec-independent protein translocase protein TatA/B/E IPR018448 Twin-arginine translocation protein TatB IPR010017 tRNA U34 carboxymethyltransferase IPR027555 tRNA (mo5U34)-methyltransferase-like IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR005271 Carboxy-S-adenosyl-L-methionine synthase IPR041698 Methyltransferase domain 25 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR002763 Protein of unknown function DUF72 IPR036520 UPF0759 superfamily IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) IPR006195 Aminoacyl-tRNA synthetase, class II IPR004524 Aspartate-tRNA ligase, type 1 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb IPR004115 GAD-like domain superfamily IPR029351 GAD domain IPR012340 Nucleic acid-binding, OB-fold IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type IPR012337 Ribonuclease H-like superfamily IPR036397 Ribonuclease H superfamily IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site IPR002176 Crossover junction endodeoxyribonuclease RuvC IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 IPR012340 Nucleic acid-binding, OB-fold IPR000085 Bacterial DNA recombination protein RuvA IPR010994 RuvA domain 2-like IPR011114 Holliday junction DNA helicase RuvA, C-terminal IPR036267 RuvA, C-terminal domain superfamily IPR003593 AAA+ ATPase domain IPR041445 RuvB, AAA lid domain IPR004605 DNA helicase, Holliday junction RuvB-type IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR008824 RuvB-like P-loop domain IPR008823 RuvB C-terminal winged helix domain IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR001001 DNA polymerase III, beta sliding clamp IPR022635 DNA polymerase III, beta sliding clamp, C-terminal IPR022637 DNA polymerase III, beta sliding clamp, central IPR022634 DNA polymerase III, beta sliding clamp, N-terminal IPR019820 Sec-independent periplasmic protein translocase, conserved site IPR002033 Sec-independent periplasmic protein translocase TatC IPR002585 Cytochrome ubiquinol oxidase subunit 1 IPR003317 Cytochrome ubiquinol oxidase subunit 2 IPR003317 Cytochrome ubiquinol oxidase subunit 2 IPR008272 4-hydroxybenzoyl-CoA thioesterase, active site IPR029069 HotDog domain superfamily IPR006683 Thioesterase domain IPR014166 Tol-Pal system-associated acyl-CoA thioesterase IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family IPR002898 MotA/TolQ/ExbB proton channel IPR014163 Tol-Pal system, TolQ IPR003400 Biopolymer transport protein ExbD/TolR IPR014168 Tol-Pal system protein TolR IPR011042 Six-bladed beta-propeller, TolB-like IPR011659 WD40-like Beta Propeller IPR014167 Tol-Pal system protein TolB IPR007195 TolB, N-terminal IPR036752 TolB, N-terminal domain superfamily IPR006664 Outer membrane protein, bacterial IPR006665 OmpA-like domain IPR006690 Outer membrane protein, OmpA-like, conserved site IPR036737 OmpA-like domain superfamily IPR039001 Peptidoglycan-associated lipoprotein IPR014169 Peptidoglycan-associated lipoprotein, C-terminal IPR034706 Cell division coordinator CpoB IPR014162 Cell division coordinator CpoB, C-terminal IPR013026 Tetratricopeptide repeat-containing domain IPR011990 Tetratricopeptide-like helical domain superfamily IPR019734 Tetratricopeptide repeat IPR032519 YbgF, trimerisation domain IPR003473 Quinolinate synthetase A IPR036094 Quinolinate synthetase A superfamily IPR023513 Quinolinate synthase A, type 1 IPR007140 Protein of unknown function DUF350 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain IPR016185 Pre-ATP-grasp domain superfamily IPR011006 CheY-like superfamily IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR015387 LuxQ, periplasmic IPR029151 Periplasmic sensor-like domain superfamily IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR001789 Signal transduction response regulator, receiver domain IPR010574 L-alanine exporter AlaE IPR018228 Deoxyribonuclease, TatD-related, conserved site IPR015991 Uncharacterised hydrolase TatD-type IPR032466 Metal-dependent hydrolase IPR001130 TatD family IPR018228 Deoxyribonuclease, TatD-related, conserved site IPR015991 Uncharacterised hydrolase TatD-type IPR032466 Metal-dependent hydrolase IPR001130 TatD family IPR011010 DNA breaking-rejoining enzyme, catalytic core IPR013762 Integrase-like, catalytic domain superfamily IPR002104 Integrase, catalytic domain IPR038488 Integrase, DNA-binding domain superfamily IPR025166 Integrase, DNA-binding domain IPR010998 Integrase/recombinase, N-terminal IPR005751 ATP-dependent DNA helicase PcrA IPR013986 DExx box DNA helicase domain superfamily IPR014017 UvrD-like DNA helicase, C-terminal IPR000212 DNA helicase, UvrD/REP type IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR014016 UvrD-like helicase, ATP-binding domain IPR034739 UvrD/AddA helicase, N-terminal IPR000594 THIF-type NAD/FAD binding fold IPR035985 Ubiquitin-activating enzyme IPR033479 Double Cache domain 1 IPR003660 HAMP domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR029151 Periplasmic sensor-like domain superfamily IPR033479 Double Cache domain 1 IPR003660 HAMP domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR029151 Periplasmic sensor-like domain superfamily IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain IPR006143 RND efflux pump, membrane fusion protein IPR001731 Delta-aminolevulinic acid dehydratase IPR030656 Delta-aminolevulinic acid dehydratase, active site IPR013785 Aldolase-type TIM barrel IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains IPR001036 Acriflavin resistance protein IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site IPR002305 Aminoacyl-tRNA synthetase, class Ic IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR002306 Tryptophan-tRNA ligase IPR024109 Tryptophan-tRNA ligase, bacterial-type IPR036691 Endonuclease/exonuclease/phosphatase superfamily IPR005135 Endonuclease/exonuclease/phosphatase IPR017766 Sphingomyelinase C/phospholipase C IPR012347 Ferritin-like IPR009078 Ferritin-like superfamily IPR010386 tRNA-hydroxylase MiaE IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR008141 Alanine dehydrogenase IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain IPR036291 NAD(P)-binding domain superfamily IPR011991 ArsR-like helix-turn-helix domain IPR000485 AsnC-type HTH domain IPR011008 Dimeric alpha-beta barrel IPR019888 Transcription regulator AsnC-type IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain IPR019885 Transcription regulator HTH, AsnC-type, conserved site IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR011991 ArsR-like helix-turn-helix domain IPR000485 AsnC-type HTH domain IPR011008 Dimeric alpha-beta barrel IPR019888 Transcription regulator AsnC-type IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain IPR019885 Transcription regulator HTH, AsnC-type, conserved site IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR011991 ArsR-like helix-turn-helix domain IPR000485 AsnC-type HTH domain IPR011008 Dimeric alpha-beta barrel IPR019888 Transcription regulator AsnC-type IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain IPR019885 Transcription regulator HTH, AsnC-type, conserved site IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR025199 DNA translocase FtsK, 4TM region IPR041027 FtsK alpha domain IPR002543 FtsK domain IPR018541 FtsK gamma domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR029046 Lipoprotein localisation LolA/LolB/LppX IPR004564 Outer membrane lipoprotein carrier protein LolA-like IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria IPR003593 AAA+ ATPase domain IPR032423 AAA C-terminal domain IPR003959 ATPase, AAA-type, core IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal IPR021886 MgsA AAA+ ATPase C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) IPR006195 Aminoacyl-tRNA synthetase, class II IPR002317 Serine-tRNA ligase, type1 IPR015866 Serine-tRNA synthetase, type1, N-terminal IPR042103 Serine-tRNA synthetase, type1, N-terminal domain superfamily IPR033729 Serine-tRNA ligase catalytic core domain IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm IPR020460 Zinc finger, DksA/TraR C4-type, bacteria IPR000962 Zinc finger, DksA/TraR C4-type IPR020458 Zinc finger, DksA/TraR C4-type conserved site IPR005814 Aminotransferase class-III IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR013785 Aldolase-type TIM barrel IPR010722 Biotin and thiamin synthesis-associated domain IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB IPR024177 Biotin synthase IPR006638 Elp3/MiaB/NifB IPR007197 Radical SAM IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site IPR004839 Aminotransferase, class I/classII IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC IPR013216 Methyltransferase type 11 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR004472 Dethiobiotin synthase BioD IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR022919 Peptidase M48, protease HtpX, putative IPR001915 Peptidase M48 IPR036291 NAD(P)-binding domain superfamily IPR020904 Short-chain dehydrogenase/reductase, conserved site IPR002347 Short-chain dehydrogenase/reductase SDR IPR002562 3'-5' exonuclease domain IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal IPR002421 5'-3' exonuclease, N-terminal IPR036279 5'-3' exonuclease, C-terminal domain superfamily IPR019760 DNA-directed DNA polymerase, family A, conserved site IPR001098 DNA-directed DNA polymerase, family A, palm domain IPR020045 DNA polymerase I-like, H3TH domain IPR018320 DNA polymerase 1 IPR002298 DNA polymerase A IPR008918 Helix-hairpin-helix motif, class 2 IPR029060 PIN-like domain superfamily IPR012337 Ribonuclease H-like superfamily IPR036397 Ribonuclease H superfamily IPR003333 Mycolic acid cyclopropane synthase IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR024083 Fumarase/histidase, N-terminal IPR020557 Fumarate lyase, conserved site IPR000362 Fumarate lyase family IPR022761 Fumarate lyase, N-terminal IPR008948 L-Aspartase-like IPR004769 Adenylosuccinate lyase IPR013539 Adenylosuccinate lyase PurB, C-terminal IPR007451 High frequency lysogenization protein HflD IPR035932 HflD-like superfamily IPR023382 Adenine nucleotide alpha hydrolase-like domains IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR004506 tRNA-specific 2-thiouridylase IPR002173 Carbohydrate/puine kinase, PfkB, conserved site IPR011611 Carbohydrate kinase PfkB IPR029056 Ribokinase-like IPR002173 Carbohydrate/puine kinase, PfkB, conserved site IPR011611 Carbohydrate kinase PfkB IPR029056 Ribokinase-like IPR027444 Histone-like protein H-NS, C-terminal domain IPR037150 Histone-like protein H-NS, C-terminal domain superfamily IPR001801 Histone-like protein H-NS IPR027454 Histone-like protein H-NS, N-terminal IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal IPR003593 AAA+ ATPase domain IPR011006 CheY-like superfamily IPR009057 Homeobox-like domain superfamily IPR002197 DNA binding HTH domain, Fis-type IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR001789 Signal transduction response regulator, receiver domain IPR002078 RNA polymerase sigma factor 54 interaction domain IPR025662 Sigma-54 interaction domain, ATP-binding site 1 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 IPR025944 Sigma-54 interaction domain, conserved site IPR013820 ATP phosphoribosyltransferase, catalytic domain IPR018198 ATP phosphoribosyltransferase, conserved site IPR001348 ATP phosphoribosyltransferase HisG IPR020621 ATP phosphoribosyltransferase HisG, long form IPR013115 Histidine biosynthesis HisG, C-terminal IPR011322 Nitrogen regulatory PII-like, alpha/beta IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal IPR016161 Aldehyde/histidinol dehydrogenase IPR001692 Histidinol dehydrogenase, conserved site IPR022695 Histidinol dehydrogenase, monofunctional IPR012131 Histidinol dehydrogenase IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site IPR004839 Aminotransferase, class I/classII IPR005861 Histidinol-phosphate aminotransferase family IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR036412 HAD-like superfamily IPR006549 HAD-superfamily hydrolase,subfamily IIIA IPR023214 HAD superfamily IPR020566 Histidine biosynthesis bifunctional protein HisB IPR005954 Histidinol-phosphatase IPR006543 Histidinol-phosphate phosphatase IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily IPR000807 Imidazoleglycerol-phosphate dehydratase IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site IPR013954 Polynucleotide kinase 3 phosphatase IPR020568 Ribosomal protein S5 domain 2-type fold IPR029062 Class I glutamine amidotransferase-like IPR017926 Glutamine amidotransferase IPR010139 Imidazole glycerol phosphate synthase, subunit H IPR030393 EngB-type guanine nucleotide-binding (G) domain IPR019987 GTP-binding protein, ribosome biogenesis, YsxC IPR006073 GTP binding domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR013785 Aldolase-type TIM barrel IPR006062 Histidine biosynthesis IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase IPR011060 Ribulose-phosphate binding barrel IPR013785 Aldolase-type TIM barrel IPR006062 Histidine biosynthesis IPR004651 Histidine biosynthesis, HisF IPR011060 Ribulose-phosphate binding barrel IPR023019 Histidine biosynthesis bifunctional protein HisIE IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like IPR002496 Phosphoribosyl-AMP cyclohydrolase domain IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily IPR032710 NTF2-like domain superfamily IPR004027 SEC-C motif IPR023006 Uncharacterised protein family UPF0225 IPR014408 Signal transduction c-di-GMP phosphodiesterase, EAL/HD-GYP domain-containing IPR001633 EAL domain IPR035919 EAL domain superfamily IPR013976 Metal-dependent hydrolase HDOD IPR014408 Signal transduction c-di-GMP phosphodiesterase, EAL/HD-GYP domain-containing IPR001633 EAL domain IPR035919 EAL domain superfamily IPR013976 Metal-dependent hydrolase HDOD IPR004843 Calcineurin-like phosphoesterase domain, ApaH type IPR029052 Metallo-dependent phosphatase-like IPR010138 UDP-2,3-diacylglucosamine hydrolase IPR029000 Cyclophilin-like domain superfamily IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain IPR029000 Cyclophilin-like domain superfamily IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain IPR015803 Cysteine-tRNA ligase IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR032678 tRNA synthetases class I, catalytic domain IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR001267 Thymidine kinase IPR020633 Thymidine kinase, conserved site IPR001238 DNA-binding, RecF IPR018078 DNA-binding, RecF, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR003395 RecF/RecN/SMC, N-terminal IPR042174 DNA-binding RecF, domain 2 IPR009056 Cytochrome c-like domain IPR036909 Cytochrome c-like domain superfamily IPR024167 Cytochrome c4-like IPR003848 Domain of unknown function DUF218 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR023271 Aquaporin-like IPR000292 Formate/nitrite transporter IPR024002 Formate/nitrite transporter, conserved site IPR023999 Formate transporter FocA, putative IPR023271 Aquaporin-like IPR000292 Formate/nitrite transporter IPR024002 Formate/nitrite transporter, conserved site IPR023999 Formate transporter FocA, putative IPR023271 Aquaporin-like IPR000292 Formate/nitrite transporter IPR024002 Formate/nitrite transporter, conserved site IPR023999 Formate transporter FocA, putative IPR005226 UPF0014 family IPR010649 Nitrate/trimethylamine N-oxide reductase NapE/TorE IPR004448 Nitrate reductas, NapE, periplasmic IPR011031 Multihaem cytochrome IPR036280 Multiheme cytochrome superfamily IPR024717 Denitrification system component NapC/NirT/NrfH IPR005126 NapC/NirT cytochrome c, N-terminal IPR038266 NapC/NirT cytochrome c superfamily IPR011885 Periplasmic nitrate reductase c-type cytochrome, NapC/NirT IPR009010 Aspartate decarboxylase-like domain superfamily IPR041954 Trimethylamine-N-oxide reductase-like, molybdopterin-binding domain IPR041460 Molybdopterin oxidoreductase, N-terminal IPR006657 Molybdopterin dinucleotide-binding domain IPR006656 Molybdopterin oxidoreductase IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site IPR006311 Twin-arginine translocation pathway, signal sequence IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal IPR011887 Trimethylamine-N-oxide reductase TorA IPR013785 Aldolase-type TIM barrel IPR038417 Alpha-galactosidase, N-terminal domain superfamily IPR000111 Glycoside hydrolase family 27/36, conserved site IPR002252 Glycoside hydrolase family 36 IPR031705 Glycosyl hydrolase family 36, C-terminal IPR031704 Glycosyl hydrolase family 36, N-terminal IPR017853 Glycoside hydrolase superfamily IPR001667 DDH domain IPR038763 DHH phosphoesterase superfamily IPR004097 DHHA2 domain IPR038222 DHHA2 domain superfamily IPR022934 Manganese-dependent inorganic pyrophosphatase, probable IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR025966 Oligopeptide transport permease C-like, N-terminal domain IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR030678 Peptide/nickel binding protein, MppA-type IPR039424 Solute-binding protein family 5 IPR023765 Solute-binding protein family 5, conserved site IPR000914 Solute-binding protein family 5 domain IPR003593 AAA+ ATPase domain IPR009057 Homeobox-like domain superfamily IPR002197 DNA binding HTH domain, Fis-type IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR002078 RNA polymerase sigma factor 54 interaction domain IPR025943 Sigma-54 interaction domain, ATP-binding site 2 IPR025944 Sigma-54 interaction domain, conserved site IPR014317 Transcription activator PspF IPR014319 Phage shock protein, PspA IPR007157 PspA/IM30 IPR009554 Phage shock protein B IPR014320 Phage shock protein, PspC IPR007168 Phage shock protein, PspC, N-terminal IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain IPR006143 RND efflux pump, membrane fusion protein IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain IPR006143 RND efflux pump, membrane fusion protein IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain IPR022824 Multidrug resistance protein MdtA IPR006143 RND efflux pump, membrane fusion protein IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains IPR001036 Acriflavin resistance protein IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains IPR001036 Acriflavin resistance protein IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains IPR001036 Acriflavin resistance protein IPR005019 Methyladenine glycosylase IPR011257 DNA glycosylase IPR004597 DNA-3-methyladenine glycosylase I IPR004961 Lipase chaperone IPR029058 Alpha/Beta hydrolase fold IPR000073 Alpha/beta hydrolase fold-1 IPR007336 Der GTPase activator IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme IPR006233 Cystathionine beta-lyase, bacterial IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR022924 Cardiolipin synthase IPR030840 Cardiolipin synthase A IPR027379 Cardiolipin synthase N-terminal IPR025202 Phospholipase D-like domain IPR001736 Phospholipase D/Transphosphatidylase IPR000175 Sodium:neurotransmitter symporter IPR037272 Sodium:neurotransmitter symporter superfamily IPR004090 Chemotaxis methyl-accepting receptor IPR003660 HAMP domain IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR000727 Target SNARE coiled-coil homology domain IPR020103 Pseudouridine synthase, catalytic domain superfamily IPR006508 Pseudouridine synthase, RluA-like IPR006224 Pseudouridine synthase, RluC/RluD, conserved site IPR006145 Pseudouridine synthase, RsuA/RluA IPR036010 2Fe-2S ferredoxin-like superfamily IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain IPR012675 Beta-grasp domain superfamily IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain IPR017927 FAD-binding domain, ferredoxin reductase-type IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain IPR001433 Oxidoreductase FAD/NAD(P)-binding IPR000951 Phthalate dioxygenase reductase IPR017938 Riboflavin synthase-like beta-barrel IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase IPR010048 Hydroxylamine reductase IPR016099 Prismane-like, alpha/beta-sandwich IPR011254 Prismane-like superfamily IPR016100 Prismane, alpha-bundle IPR003593 AAA+ ATPase domain IPR003018 GAF domain IPR029016 GAF-like domain superfamily IPR009057 Homeobox-like domain superfamily IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR002078 RNA polymerase sigma factor 54 interaction domain IPR025662 Sigma-54 interaction domain, ATP-binding site 1 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 IPR025944 Sigma-54 interaction domain, conserved site IPR019617 Domain of unknown function DUF2489 IPR000462 CDP-alcohol phosphatidyltransferase IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR006059 Bacterial extracellular solute-binding protein IPR027020 Protein ynjB IPR032816 SNARE associated Golgi protein IPR028261 Dihydroprymidine dehydrogenase domain II IPR036188 FAD/NAD(P)-binding domain superfamily IPR023753 FAD/NAD(P)-binding domain IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 IPR009051 Alpha-helical ferredoxin IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN IPR034505 Anaerobic coproporphyrinogen-III oxidase IPR006638 Elp3/MiaB/NifB IPR010723 HemN, C-terminal IPR007197 Radical SAM IPR023404 Radical SAM, alpha/beta horseshoe IPR011006 CheY-like superfamily IPR001789 Signal transduction response regulator, receiver domain IPR000792 Transcription regulator LuxR, C-terminal IPR036388 Winged helix-like DNA-binding domain superfamily IPR011006 CheY-like superfamily IPR001789 Signal transduction response regulator, receiver domain IPR000792 Transcription regulator LuxR, C-terminal IPR036388 Winged helix-like DNA-binding domain superfamily IPR010710 Protein of unknown function DUF1289 IPR008334 5'-Nucleotidase, C-terminal IPR036907 5'-Nucleotidase, C-terminal domain superfamily IPR006146 5'-Nucleotidase, conserved site IPR006179 5'-Nucleotidase/apyrase IPR004843 Calcineurin-like phosphoesterase domain, ApaH type IPR029052 Metallo-dependent phosphatase-like IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal IPR029751 Ribosomal protein L25 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily IPR020055 Ribosomal protein L25, short-form IPR003660 HAMP domain IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR001365 Adenosine/AMP deaminase domain IPR028893 Adenosine deaminase IPR006330 Adenosine/adenine deaminase IPR032466 Metal-dependent hydrolase IPR011006 CheY-like superfamily IPR001867 OmpR/PhoB-type DNA-binding domain IPR016032 Signal transduction response regulator, C-terminal effector IPR001789 Signal transduction response regulator, receiver domain IPR039420 Transcriptional regulatory protein WalR-like IPR036388 Winged helix-like DNA-binding domain superfamily IPR006935 Helicase/UvrB, N-terminal IPR014001 Helicase superfamily 1/2, ATP-binding domain IPR001650 Helicase, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR011332 Zinc-binding ribosomal protein IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain IPR020103 Pseudouridine synthase, catalytic domain superfamily IPR006145 Pseudouridine synthase, RsuA/RluA IPR000748 Pseudouridine synthase, RsuA/RluB/E/F IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site IPR002942 RNA-binding S4 domain IPR036986 RNA-binding S4 domain superfamily IPR004812 Drug resistance transporter Bcr/CmlA subfamily IPR011701 Major facilitator superfamily IPR020846 Major facilitator superfamily domain IPR036259 MFS transporter superfamily IPR004734 Multidrug resistance protein IPR020015 Decaheme cytochrome, c-type, DmsE IPR011031 Multihaem cytochrome IPR036280 Multiheme cytochrome superfamily IPR010177 Doubled CXXCH motif IPR009154 Membrane-bound tetrahaem cytochrome TorC/YecK IPR011031 Multihaem cytochrome IPR036280 Multiheme cytochrome superfamily IPR005126 NapC/NirT cytochrome c, N-terminal IPR038266 NapC/NirT cytochrome c superfamily IPR021295 Protein of unknown function DUF2867 IPR016040 NAD(P)-binding domain IPR036291 NAD(P)-binding domain superfamily IPR002528 Multi antimicrobial extrusion protein IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR023171 Na/H antiporter domain superfamily IPR004670 Na+/H+ antiporter NhaA IPR032551 HTH-type transcriptional repressor, C-terminal IPR023772 DNA-binding HTH domain, TetR-type, conserved site IPR009057 Homeobox-like domain superfamily IPR001647 DNA-binding HTH domain, TetR-type IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily IPR032551 HTH-type transcriptional repressor, C-terminal IPR023772 DNA-binding HTH domain, TetR-type, conserved site IPR009057 Homeobox-like domain superfamily IPR001647 DNA-binding HTH domain, TetR-type IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain IPR036250 Acyl-CoA dehydrogenase-like, C-terminal IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type IPR024906 Enoyl reductase FAD binding domain IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative IPR010758 Trans-2-enoyl-CoA reductase IPR003593 AAA+ ATPase domain IPR011006 CheY-like superfamily IPR009057 Homeobox-like domain superfamily IPR002197 DNA binding HTH domain, Fis-type IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR001789 Signal transduction response regulator, receiver domain IPR002078 RNA polymerase sigma factor 54 interaction domain IPR025662 Sigma-54 interaction domain, ATP-binding site 1 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 IPR025944 Sigma-54 interaction domain, conserved site IPR010114 DNA-binding transcriptional regulator NtrC IPR006037 Regulator of K+ conductance, C-terminal IPR036721 Regulator of K+ conductance, C-terminal domain superfamily IPR023017 Transport protein YbjL, putative IPR006512 YidE/YbjL duplication IPR002109 Glutaredoxin IPR014025 Glutaredoxin subgroup IPR011902 Glutaredoxin, GrxA IPR036249 Thioredoxin-like superfamily IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA IPR018211 Alcohol dehydrogenase, iron-type, conserved site IPR039697 Iron-type alcohol dehydrogenase-like IPR009057 Homeobox-like domain superfamily IPR000281 Helix-turn-helix protein RpiR IPR035472 RpiR-like, SIS domain IPR001347 Sugar isomerase (SIS) IPR036388 Winged helix-like DNA-binding domain superfamily IPR022517 Aspartate 1-decarboxylase, pyridoxal-dependent IPR002129 Pyridoxal phosphate-dependent decarboxylase IPR015424 Pyridoxal phosphate-dependent transferase IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR005642 Lysine exporter LysO IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR000014 PAS domain IPR035965 PAS domain superfamily IPR013767 PAS fold IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR007077 TfoX, C-terminal IPR007076 TfoX, N-terminal IPR026256 Transcriptional regulator, TfoX/Sxy-type IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR001638 Solute-binding protein family 3/N-terminal domain of MltF IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR001638 Solute-binding protein family 3/N-terminal domain of MltF IPR000192 Aminotransferase class V domain IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site IPR022278 Phosphoserine aminotransferase IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR011780 D-serine ammonia-lyase IPR001926 Pyridoxal-phosphate dependent enzyme IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme IPR003593 AAA+ ATPase domain IPR011527 ABC transporter type 1, transmembrane domain IPR036640 ABC transporter type 1, transmembrane domain superfamily IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR003593 AAA+ ATPase domain IPR011527 ABC transporter type 1, transmembrane domain IPR036640 ABC transporter type 1, transmembrane domain superfamily IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR039421 Type I protein exporter IPR036188 FAD/NAD(P)-binding domain superfamily IPR023753 FAD/NAD(P)-binding domain IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site IPR005982 Thioredoxin reductase IPR002288 DNA gyrase B subunit, C-terminal IPR011557 DNA gyrase, subunit B IPR041423 DNA gyrase subunit B insert domain IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR020568 Ribosomal protein S5 domain 2-type fold IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup IPR001241 DNA topoisomerase, type IIA IPR013760 DNA topoisomerase, type IIA-like domain superfamily IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 IPR018522 DNA topoisomerase, type IIA, conserved site IPR006171 TOPRIM domain IPR034160 DNA gyrase subunit B, TOPRIM domain IPR000192 Aminotransferase class V domain IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site IPR010970 Cysteine desulfurase, SufS IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR011006 CheY-like superfamily IPR000160 GGDEF domain IPR029787 Nucleotide cyclase IPR001789 Signal transduction response regulator, receiver domain IPR011006 CheY-like superfamily IPR000160 GGDEF domain IPR029787 Nucleotide cyclase IPR001789 Signal transduction response regulator, receiver domain IPR011006 CheY-like superfamily IPR000160 GGDEF domain IPR029787 Nucleotide cyclase IPR001789 Signal transduction response regulator, receiver domain IPR031312 Sodium/sulphate symporter, conserved site IPR001898 Solute carrier family 13 IPR031312 Sodium/sulphate symporter, conserved site IPR001898 Solute carrier family 13 IPR031312 Sodium/sulphate symporter, conserved site IPR001898 Solute carrier family 13 IPR003848 Domain of unknown function DUF218 IPR023604 Uncharacterised protein family SanA IPR015884 Malic enzyme, conserved site IPR012301 Malic enzyme, N-terminal domain IPR037062 Malic enzyme, N-terminal domain superfamily IPR012302 Malic enzyme, NAD-binding IPR001891 Malic oxidoreductase IPR036291 NAD(P)-binding domain superfamily IPR023667 NAD-dependent malic enzyme, proteobacteria IPR011545 DEAD/DEAH box helicase domain IPR007502 Helicase-associated domain IPR014001 Helicase superfamily 1/2, ATP-binding domain IPR001650 Helicase, C-terminal IPR010225 ATP-dependent helicase HrpB IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR013689 ATP-dependent RNA helicase HrpB, C-terminal IPR011545 DEAD/DEAH box helicase domain IPR007502 Helicase-associated domain IPR014001 Helicase superfamily 1/2, ATP-binding domain IPR001650 Helicase, C-terminal IPR010225 ATP-dependent helicase HrpB IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR013689 ATP-dependent RNA helicase HrpB, C-terminal IPR003187 Phospholipase A1 IPR036541 Phospholipase A1 superfamily IPR008147 Glutamine synthetase, beta-Grasp domain IPR036651 Glutamine synthetase, N-terminal domain superfamily IPR014746 Glutamine synthetase/guanido kinase, catalytic domain IPR008146 Glutamine synthetase, catalytic domain IPR027303 Glutamine synthetase, glycine-rich site IPR004809 Glutamine synthetase type I IPR001637 Glutamine synthetase class-I, adenylation site IPR027302 Glutamine synthetase, N-terminal conserved site IPR018946 Alkaline phosphatase D-related IPR038607 PhoD-like superfamily IPR032093 Phospholipase D, N-terminal IPR008963 Purple acid phosphatase-like, N-terminal IPR006311 Twin-arginine translocation pathway, signal sequence IPR028923 SAICAR synthetase/ADE2, N-terminal IPR014106 Phosphoribosylaminoimidazole-succinocarboxamide synthase, Vibrio-type IPR018236 SAICAR synthetase, conserved site IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel IPR006664 Outer membrane protein, bacterial IPR006665 OmpA-like domain IPR006690 Outer membrane protein, OmpA-like, conserved site IPR036737 OmpA-like domain superfamily IPR008722 Outer membrane porin F, N-terminal IPR028974 TSP type-3 repeat IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel IPR006664 Outer membrane protein, bacterial IPR006665 OmpA-like domain IPR006690 Outer membrane protein, OmpA-like, conserved site IPR036737 OmpA-like domain superfamily IPR008722 Outer membrane porin F, N-terminal IPR028974 TSP type-3 repeat IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel IPR006664 Outer membrane protein, bacterial IPR006665 OmpA-like domain IPR006690 Outer membrane protein, OmpA-like, conserved site IPR036737 OmpA-like domain superfamily IPR008722 Outer membrane porin F, N-terminal IPR028974 TSP type-3 repeat IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel IPR006664 Outer membrane protein, bacterial IPR006665 OmpA-like domain IPR006690 Outer membrane protein, OmpA-like, conserved site IPR036737 OmpA-like domain superfamily IPR008722 Outer membrane porin F, N-terminal IPR028974 TSP type-3 repeat IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site IPR016166 FAD-binding domain, PCMH-type IPR036318 FAD-binding, type PCMH-like superfamily IPR016164 FAD-linked oxidase-like, C-terminal IPR004113 FAD-linked oxidase, C-terminal IPR009051 Alpha-helical ferredoxin IPR006094 FAD linked oxidase, N-terminal IPR007318 Phospholipid methyltransferase IPR035651 BipA, domain V IPR035647 EF-G domain III/V-like IPR000640 Elongation factor EFG, domain V-like IPR004161 Translation elongation factor EFTu-like, domain 2 IPR031157 Tr-type G domain, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR005225 Small GTP-binding protein domain IPR000795 Transcription factor, GTP-binding domain IPR009000 Translation protein, beta-barrel domain superfamily IPR042116 GTP-binding protein TypA/BipA, C-terminal IPR006298 GTP-binding protein TypA IPR001106 Aromatic amino acid lyase IPR024083 Fumarase/histidase, N-terminal IPR005921 Histidine ammonia-lyase IPR008948 L-Aspartase-like IPR022313 Phenylalanine/histidine ammonia-lyases, active site IPR023637 Urocanase IPR035401 Urocanase, C-terminal domain IPR038364 Urocanase, central domain superfamily IPR023636 Urocanase conserved site IPR035400 Urocanase, N-terminal domain IPR035085 Urocanase, Rossmann-like domain IPR036190 Urocanase superfamily IPR005923 Formiminoglutamase IPR006035 Ureohydrolase IPR023696 Ureohydrolase domain superfamily IPR020855 Ureohydrolase, manganese-binding site IPR006680 Amidohydrolase-related IPR005920 Imidazolonepropionase IPR011059 Metal-dependent hydrolase, composite domain superfamily IPR032466 Metal-dependent hydrolase IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily IPR010248 Histidine utilization repressor IPR000524 Transcription regulator HTH, GntR IPR011663 UbiC transcription regulator-associated IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) IPR006195 Aminoacyl-tRNA synthetase, class II IPR004154 Anticodon-binding IPR036621 Anticodon-binding domain superfamily IPR012675 Beta-grasp domain superfamily IPR004095 TGS IPR012676 TGS-like IPR002320 Threonine-tRNA ligase, class IIa IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily IPR033728 Threonine-tRNA ligase catalytic core domain IPR012947 Threonyl/alanyl tRNA synthetase, SAD IPR021137 Ribosomal protein L35 IPR018265 Ribosomal protein L35, conserved site IPR001706 Ribosomal protein L35, non-mitochondrial IPR037229 Ribosomal protein L35 superfamily IPR005813 Ribosomal protein L20 IPR035566 Ribosomal protein L20, C-terminal IPR002765 Uncharacterised protein family UPF0145 IPR035439 UPF0145 domain superfamily IPR000160 GGDEF domain IPR033424 Membrane-associated sensor domain IPR029787 Nucleotide cyclase IPR000160 GGDEF domain IPR033424 Membrane-associated sensor domain IPR029787 Nucleotide cyclase IPR000160 GGDEF domain IPR033424 Membrane-associated sensor domain IPR029787 Nucleotide cyclase IPR000160 GGDEF domain IPR033424 Membrane-associated sensor domain IPR029787 Nucleotide cyclase IPR006195 Aminoacyl-tRNA synthetase, class II IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial IPR002319 Phenylalanyl-tRNA synthetase IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm IPR005146 B3/B4 tRNA-binding domain IPR009061 Putative DNA-binding domain superfamily IPR005121 Ferrodoxin-fold anticodon-binding domain IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily IPR012340 Nucleic acid-binding, OB-fold IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 IPR041616 Phenylalanyl tRNA synthetase beta chain, core domain IPR002547 tRNA-binding domain IPR033714 Phenylalanly tRNA synthetase, tRNA-binding-domain IPR005147 tRNA synthetase, B5-domain IPR000119 Histone-like DNA-binding protein IPR020816 Histone-like DNA-binding protein, conserved site IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily IPR005684 Integration host factor, alpha subunit IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR022474 Thiopurine S-methyltransferase, Se/Te detoxification IPR025835 Thiopurine S-methyltransferase IPR008854 TPMT family IPR011761 ATP-grasp fold IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type IPR013815 ATP-grasp fold, subdomain 1 IPR016185 Pre-ATP-grasp domain superfamily IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase IPR011054 Rudiment single hybrid motif IPR016192 APOBEC/CMP deaminase, zinc-binding IPR002125 Cytidine and deoxycytidylate deaminase domain IPR013171 Cytidine/deoxycytidylate deaminase, zinc-binding domain IPR006263 Cytidine deaminase, homodimeric IPR016193 Cytidine deaminase-like IPR020797 Cytidine deaminase, bacteria IPR005261 Conserved hypothetical protein CHP00659 IPR007300 CidB/LrgB family IPR005538 LrgA/CidA family IPR022957 Uncharacterised protein family UPF0299 IPR023607 Exodeoxyribonuclease I IPR034748 Exonuclease I, C-terminal alpha-helical domain IPR034747 Exonuclease I, SH3-like domain IPR038649 Exonuclease I, SH3-like domain superfamily IPR013620 Exodeoxyribonuclease I, C-terminal IPR013520 Exonuclease, RNase T/DNA polymerase III IPR012337 Ribonuclease H-like superfamily IPR036397 Ribonuclease H superfamily IPR023679 Uncharacterised protein family UPF0761, bacterial IPR017039 Virulence factor BrkB IPR001991 Sodium:dicarboxylate symporter IPR036458 Sodium:dicarboxylate symporter superfamily IPR016040 NAD(P)-binding domain IPR036291 NAD(P)-binding domain superfamily IPR000534 Semialdehyde dehydrogenase, NAD-binding IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic IPR036087 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like superfamily IPR003805 Adenosylcobinamide-GDP ribazoletransferase IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR007036 Succinylglutamate desuccinylase/aspartoacylase IPR016681 Succinylglutamate desuccinylase IPR037294 ABC transporter, BtuC-like IPR023691 ABC transporter, vitamin B12 import, permease protein BtuC IPR000522 ABC transporter, permease protein, BtuC-like IPR003732 D-aminoacyl-tRNA deacylase DTD IPR023509 D-aminoacyl-tRNA deacylase-like superfamily IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR023693 ABC transporter, vitamin B12, BtuD IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR034683 Cytidylyltransferase IspD/TarI IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site IPR029044 Nucleotide-diphospho-sugar transferases IPR034709 Ribitol-5-phosphate cytidylyltransferase IPR016040 NAD(P)-binding domain IPR036291 NAD(P)-binding domain superfamily IPR016181 Acyl-CoA N-acyltransferase IPR000182 GNAT domain IPR029069 HotDog domain superfamily IPR012660 Thioesterase, putative IPR007074 LicD family IPR002725 Protein of unknown function DUF45 IPR010286 METTL16/RlmF family IPR016909 Ribosomal RNA large subunit methyltransferase F IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR008920 Transcription regulator FadR/GntR, C-terminal IPR000524 Transcription regulator HTH, GntR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR016161 Aldehyde/histidinol dehydrogenase IPR016163 Aldehyde dehydrogenase, C-terminal IPR016162 Aldehyde dehydrogenase, N-terminal IPR015590 Aldehyde dehydrogenase domain IPR008794 Proline racemase family IPR036291 NAD(P)-binding domain superfamily IPR003462 Ornithine cyclodeaminase/mu-crystallin IPR023401 Ornithine cyclodeaminase, N-terminal IPR013785 Aldolase-type TIM barrel IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA IPR002220 DapA-like IPR020625 Schiff base-forming aldolase, active site IPR020624 Schiff base-forming aldolase, conserved site IPR003593 AAA+ ATPase domain IPR017879 ABC transporter, spermidine/putrescine import ATP-binding protein, PotA IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR008995 Molybdate/tungstate binding, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit IPR013611 Transport-associated OB, type 2 IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR013783 Immunoglobulin-like fold IPR013661 Peptidase M9, collagenase, N-terminal domain IPR002169 Peptidase M9A/M9B, collagenase, bacterial IPR022409 PKD/Chitinase domain IPR000601 PKD domain IPR035986 PKD domain superfamily IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR025966 Oligopeptide transport permease C-like, N-terminal domain IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR030678 Peptide/nickel binding protein, MppA-type IPR039424 Solute-binding protein family 5 IPR023765 Solute-binding protein family 5, conserved site IPR000914 Solute-binding protein family 5 domain IPR030678 Peptide/nickel binding protein, MppA-type IPR039424 Solute-binding protein family 5 IPR023765 Solute-binding protein family 5, conserved site IPR000914 Solute-binding protein family 5 domain IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site IPR036264 Bacterial exopeptidase dimerisation domain IPR010162 Peptidase M20B, peptidase T-like IPR002933 Peptidase M20 IPR011650 Peptidase M20, dimerisation domain IPR008007 Peptidase M42 IPR005956 4-hydroxyphenylpyruvate dioxygenase IPR041735 4-hydroxyphenylpyruvate dioxygenase, C-terminal IPR041736 4-hydroxyphenylpyruvate dioxygenase, N-terminal IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain IPR037523 Vicinal oxygen chelate (VOC) domain IPR005708 Homogentisate 1,2-dioxygenase IPR014710 RmlC-like jelly roll fold IPR011051 RmlC-like cupin domain superfamily IPR000397 Heat shock protein Hsp33 IPR016154 Heat shock protein Hsp33, C-terminal IPR016153 Heat shock protein Hsp33, N-terminal IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily IPR010987 Glutathione S-transferase, C-terminal-like IPR036282 Glutathione S-transferase, C-terminal domain superfamily IPR040079 Glutathione Transferase family IPR004045 Glutathione S-transferase, N-terminal IPR004046 Glutathione S-transferase, C-terminal IPR005955 Glutathione S-transferases, class Zeta IPR034330 Glutathione S-transferases, class Zeta , C-terminal IPR034333 Glutathione S-transferases, class Zeta , N-terminal IPR036249 Thioredoxin-like superfamily IPR039562 Membrane fusion protein, biotin-lipoyl like domain IPR022871 Para-hydroxybenzoic acid efflux pump, subunit AaeA IPR006143 RND efflux pump, membrane fusion protein IPR025708 Heat shock protein 15 IPR002942 RNA-binding S4 domain IPR036986 RNA-binding S4 domain superfamily IPR003453 ABC transport permease subunit MlaE, Proteobacteria IPR030802 ABC transporter permease MalE IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR030296 Probable ABC transporter ATP-binding protein MlaF/Mkl IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site IPR036264 Bacterial exopeptidase dimerisation domain IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria IPR002933 Peptidase M20 IPR011650 Peptidase M20, dimerisation domain IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase IPR004625 Pyridoxine kinase IPR023685 Pyridoxal kinase PdxY IPR029056 Ribokinase-like IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR036034 PDZ superfamily IPR024961 Type II secretion system protein C, N-terminal IPR001639 Type II secretion system protein C IPR013078 Histidine phosphatase superfamily, clade-1 IPR029033 Histidine phosphatase superfamily IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site IPR023086 Phosphoglycerate mutase, GpmB, probable IPR011006 CheY-like superfamily IPR009057 Homeobox-like domain superfamily IPR002197 DNA binding HTH domain, Fis-type IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR001789 Signal transduction response regulator, receiver domain IPR002078 RNA polymerase sigma factor 54 interaction domain IPR025944 Sigma-54 interaction domain, conserved site IPR001633 EAL domain IPR035919 EAL domain superfamily IPR000160 GGDEF domain IPR005330 MHYT domain IPR029787 Nucleotide cyclase IPR035965 PAS domain superfamily IPR021812 Protein of unknown function DUF3391 IPR003607 HD/PDEase domain IPR006674 HD domain IPR037522 HD-GYP domain IPR006675 HDIG domain IPR004778 Homoserine/Threonine efflux protein IPR001123 Amino acid exporter protein, LeuE-type IPR001775 GspD/PilQ family IPR005644 NolW-like IPR038591 NolW-like superfamily IPR004846 Type II/III secretion system IPR013356 Type II secretion system GspD IPR004845 Type II secretion system GspD, conserved site IPR016905 Glycyl radical enzyme, HI0521, predicted IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site IPR013785 Aldolase-type TIM barrel IPR034457 Organic radical-activating enzymes IPR012839 Organic radical enzyme activase IPR001989 Radical-activating enzyme, conserved site IPR007197 Radical SAM IPR023912 Putative glycyl-radical enzyme activating enzyme YjjW IPR005496 Integral membrane protein TerC IPR011055 Duplicated hybrid motif IPR018392 LysM domain IPR013731 Opacity-associated protein A, N-terminal IPR016047 Peptidase M23 IPR011055 Duplicated hybrid motif IPR018392 LysM domain IPR013731 Opacity-associated protein A, N-terminal IPR016047 Peptidase M23 IPR011055 Duplicated hybrid motif IPR018392 LysM domain IPR013731 Opacity-associated protein A, N-terminal IPR016047 Peptidase M23 IPR003593 AAA+ ATPase domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR001482 Type II/IV secretion system protein IPR037257 General secretory system II, protein E, N-terminal superfamily IPR013369 Type II secretion system GspE IPR042181 Type II secretion system, protein E, N-terminal IPR003593 AAA+ ATPase domain IPR011006 CheY-like superfamily IPR009057 Homeobox-like domain superfamily IPR002197 DNA binding HTH domain, Fis-type IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR001789 Signal transduction response regulator, receiver domain IPR002078 RNA polymerase sigma factor 54 interaction domain IPR025662 Sigma-54 interaction domain, ATP-binding site 1 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 IPR025944 Sigma-54 interaction domain, conserved site IPR029995 Transcriptional activator SfnR/FlbD IPR003593 AAA+ ATPase domain IPR003959 ATPase, AAA-type, core IPR017729 Type VI secretion system, ATPase ClpV1 IPR019489 Clp ATPase, C-terminal IPR036628 Clp, N-terminal domain superfamily IPR004176 Clp, N-terminal IPR001270 ClpA/B family IPR018368 ClpA/B, conserved site 1 IPR041546 ClpA/ClpB, AAA lid domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR003593 AAA+ ATPase domain IPR003959 ATPase, AAA-type, core IPR017729 Type VI secretion system, ATPase ClpV1 IPR019489 Clp ATPase, C-terminal IPR036628 Clp, N-terminal domain superfamily IPR004176 Clp, N-terminal IPR001270 ClpA/B family IPR018368 ClpA/B, conserved site 1 IPR041546 ClpA/ClpB, AAA lid domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR036624 Hcp1-like superfamily IPR008514 Type VI secretion system effector, Hcp IPR006531 Gp5 N-terminal IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset IPR006533 Type VI secretion system, RhsGE-associated Vgr protein IPR037026 Vgr protein, OB-fold domain superfamily IPR003004 GspF/PilC family IPR011850 General secretion pathway protein F IPR001992 Type II secretion system conserved site IPR018076 Type II secretion system F domain IPR042094 Type II secretion system F domain superfamily IPR011009 Protein kinase-like domain superfamily IPR000719 Protein kinase domain IPR017441 Protein kinase, ATP binding site IPR008271 Serine/threonine-protein kinase, active site IPR023507 Serine/threonine protein kinase PknD IPR011990 Tetratricopeptide-like helical domain superfamily IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath IPR010272 Type VI secretion system, TssF-like IPR010272 Type VI secretion system, TssF-like IPR011991 ArsR-like helix-turn-helix domain IPR000485 AsnC-type HTH domain IPR011008 Dimeric alpha-beta barrel IPR019888 Transcription regulator AsnC-type IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain IPR019885 Transcription regulator HTH, AsnC-type, conserved site IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR000983 Bacterial general secretion pathway protein G-type pilin IPR012902 Prokaryotic N-terminal methylation site IPR013545 Type II secretion system protein G IPR010054 General secretion pathway protein G IPR010263 Type VI secretion protein, VC_A0114 IPR010263 Type VI secretion protein, VC_A0114 IPR012902 Prokaryotic N-terminal methylation site IPR022346 General secretion pathway, GspH IPR002416 Type II secretion system protein H IPR003607 HD/PDEase domain IPR006674 HD domain IPR037522 HD-GYP domain IPR006675 HDIG domain IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA IPR018211 Alcohol dehydrogenase, iron-type, conserved site IPR039697 Iron-type alcohol dehydrogenase-like IPR018227 Amino acid/polyamine transporter 2 IPR013061 Tryptophan/tryrosine permease, conserved site IPR013059 Tryptophan/tyrosine transporter IPR012902 Prokaryotic N-terminal methylation site IPR003413 Type II secretion system protein I domain IPR010052 Type II secretion system protein I IPR003593 AAA+ ATPase domain IPR011527 ABC transporter type 1, transmembrane domain IPR036640 ABC transporter type 1, transmembrane domain superfamily IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR039421 Type I protein exporter IPR003593 AAA+ ATPase domain IPR011527 ABC transporter type 1, transmembrane domain IPR036640 ABC transporter type 1, transmembrane domain superfamily IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR039421 Type I protein exporter IPR012725 Chaperone DnaK IPR018181 Heat shock protein 70, conserved site IPR029048 Heat shock protein 70kD, C-terminal domain superfamily IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily IPR013126 Heat shock protein 70 family IPR012725 Chaperone DnaK IPR018181 Heat shock protein 70, conserved site IPR029048 Heat shock protein 70kD, C-terminal domain superfamily IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily IPR013126 Heat shock protein 70 family IPR012902 Prokaryotic N-terminal methylation site IPR010055 Type II secretion system protein J IPR011888 Anaerobic dimethyl sulphoxide reductase, subunit A, DmsA/YnfE IPR009010 Aspartate decarboxylase-like domain superfamily IPR006657 Molybdopterin dinucleotide-binding domain IPR006656 Molybdopterin oxidoreductase IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site IPR006311 Twin-arginine translocation pathway, signal sequence IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site IPR014297 Dimethylsulphoxide reductase, chain B IPR007059 DMSO reductase anchor subunit (DmsC) IPR005628 General secretion pathway protein K IPR038072 GspK, central domain superfamily IPR026269 Tat proofreading chaperone DmsD-type IPR028611 Tat proofreading chaperone DmsD IPR020945 DMSO/Nitrate reductase chaperone IPR036411 TorD-like superfamily IPR003680 Flavodoxin-like fold IPR029039 Flavoprotein-like superfamily IPR023048 NADH-azoreductase, FMN-dependent IPR003593 AAA+ ATPase domain IPR011545 DEAD/DEAH box helicase domain IPR011709 Domain of unknown function DUF1605 IPR007502 Helicase-associated domain IPR014001 Helicase superfamily 1/2, ATP-binding domain IPR001650 Helicase, C-terminal IPR024590 RNA helicase HrpA, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR010222 RNA helicase HrpA IPR018093 BCCT transporter, conserved site IPR000060 BCCT transporter family IPR003362 Bacterial sugar transferase IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase IPR001173 Glycosyltransferase 2-like IPR029044 Nucleotide-diphospho-sugar transferases IPR023853 Poly-beta-1,6 N-acetyl-D-glucosamine synthase PgaC/IcaA IPR024230 GspL, cytoplasmic actin-ATPase-like domain IPR025691 GspL periplasmic domain IPR007812 Type II secretion system protein L IPR001296 Glycosyl transferase, family 1 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain IPR023881 N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA IPR001296 Glycosyl transferase, family 1 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain IPR001296 Glycosyl transferase, family 1 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain IPR003593 AAA+ ATPase domain IPR011006 CheY-like superfamily IPR009057 Homeobox-like domain superfamily IPR002197 DNA binding HTH domain, Fis-type IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR001789 Signal transduction response regulator, receiver domain IPR002078 RNA polymerase sigma factor 54 interaction domain IPR025943 Sigma-54 interaction domain, ATP-binding site 2 IPR025944 Sigma-54 interaction domain, conserved site IPR007690 Type II secretion system, protein M IPR023229 Type II secretion system protein M, periplasmic domain superfamily IPR003715 Polysaccharide export protein IPR019554 Soluble ligand binding domain IPR003658 Anti-sigma factor antagonist IPR014237 Anti-sigma F factor antagonist IPR002645 STAS domain IPR036513 STAS domain superfamily IPR012310 DNA ligase, ATP-dependent, central IPR016059 DNA ligase, ATP-dependent, conserved site IPR029319 DNA ligase, OB-like domain IPR012340 Nucleic acid-binding, OB-fold IPR002528 Multi antimicrobial extrusion protein IPR000645 Type II secretion system protein N, conserved site IPR022792 Type II secretion system, protein N IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily IPR001783 Lumazine-binding protein IPR026017 Lumazine-binding domain IPR017938 Riboflavin synthase-like beta-barrel IPR016477 Fructosamine/Ketosamine-3-kinase IPR011009 Protein kinase-like domain superfamily IPR008248 Protein-glutamate methylesterase/protein-glutamine glutaminase, CheB type IPR035909 Methylesterase CheB, C-terminal IPR011006 CheY-like superfamily IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase IPR001789 Signal transduction response regulator, receiver domain IPR000160 GGDEF domain IPR007894 MASE2 IPR029787 Nucleotide cyclase IPR000160 GGDEF domain IPR007894 MASE2 IPR029787 Nucleotide cyclase IPR000160 GGDEF domain IPR007894 MASE2 IPR029787 Nucleotide cyclase IPR000160 GGDEF domain IPR007894 MASE2 IPR029787 Nucleotide cyclase IPR000064 Endopeptidase, NLPC/P60 domain IPR038765 Papain-like cysteine peptidase superfamily IPR004090 Chemotaxis methyl-accepting receptor IPR003660 HAMP domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR033463 Single cache domain 3 IPR029151 Periplasmic sensor-like domain superfamily IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ IPR020583 Inositol monophosphatase, metal-binding site IPR000760 Inositol monophosphatase-like IPR020550 Inositol monophosphatase, conserved site IPR005636 DTW IPR039262 DTW domain-containing protein 2 IPR005636 DTW IPR039262 DTW domain-containing protein 2 IPR023505 N-acetyl-D-glucosamine kinase IPR000600 ROK family IPR036425 MoaB/Mog-like domain superfamily IPR001453 MoaB/Mog domain IPR008284 Molybdenum cofactor biosynthesis, conserved site IPR038987 Molybdopterin biosynthesis protein MoeA-like IPR005111 MoeA, C-terminal, domain IV IPR036688 MoeA, C-terminal, domain IV superfamily IPR005110 MoeA, N-terminal and linker domain IPR036135 MoeA, N-terminal and linker domain superfamily IPR025877 MobA-like NTP transferase IPR013482 Molybdenum cofactor guanylyltransferase IPR029044 Nucleotide-diphospho-sugar transferases IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR015853 ABC transporter, ferric cation import, FbpC IPR008995 Molybdate/tungstate binding, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR013611 Transport-associated OB, type 2 IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR015797 NUDIX hydrolase-like domain superfamily IPR020084 NUDIX hydrolase, conserved site IPR000086 NUDIX hydrolase domain IPR024370 PBP domain IPR003593 AAA+ ATPase domain IPR011006 CheY-like superfamily IPR009057 Homeobox-like domain superfamily IPR002197 DNA binding HTH domain, Fis-type IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR001789 Signal transduction response regulator, receiver domain IPR002078 RNA polymerase sigma factor 54 interaction domain IPR025662 Sigma-54 interaction domain, ATP-binding site 1 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 IPR025944 Sigma-54 interaction domain, conserved site IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR029151 Periplasmic sensor-like domain superfamily IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR003593 AAA+ ATPase domain IPR032781 ABC-transporter extension domain IPR003439 ABC transporter-like IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR016193 Cytidine deaminase-like IPR003786 Sulfur carrier protein FdhD IPR017726 Fe/S biogenesis protein NfuA IPR000361 FeS cluster biogenesis IPR034904 Fe-S cluster assembly domain superfamily IPR035903 HesB-like domain superfamily IPR001075 NIF system FeS cluster assembly, NifU, C-terminal IPR023069 Chaperone TorD IPR020945 DMSO/Nitrate reductase chaperone IPR036386 HscB, C-terminal domain superfamily IPR036411 TorD-like superfamily IPR009010 Aspartate decarboxylase-like domain superfamily IPR006443 Formate dehydrogenase-N, alpha subunit IPR006657 Molybdopterin dinucleotide-binding domain IPR006656 Molybdopterin oxidoreductase IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site IPR006311 Twin-arginine translocation pathway, signal sequence IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site IPR000813 7Fe ferredoxin IPR001826 RHS protein IPR022385 Rhs repeat-associated core IPR031325 RHS repeat IPR006530 YD repeat IPR005222 Competence protein ComF IPR000836 Phosphoribosyltransferase domain IPR029057 Phosphoribosyltransferase-like IPR029020 Ammonium/urea transporter IPR001905 Ammonium transporter IPR018047 Ammonium transporter, conserved site IPR024041 Ammonium transporter AmtB-like domain IPR029020 Ammonium/urea transporter IPR001905 Ammonium transporter IPR018047 Ammonium transporter, conserved site IPR024041 Ammonium transporter AmtB-like domain IPR029035 DHS-like NAD/FAD-binding domain superfamily IPR003000 Sirtuin family IPR026591 Sirtuin, catalytic core small domain superfamily IPR027546 Sirtuin, class III IPR026590 Sirtuin family, catalytic core domain IPR006059 Bacterial extracellular solute-binding protein IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein IPR006059 Bacterial extracellular solute-binding protein IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein IPR006059 Bacterial extracellular solute-binding protein IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR003593 AAA+ ATPase domain IPR017879 ABC transporter, spermidine/putrescine import ATP-binding protein, PotA IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR008995 Molybdate/tungstate binding, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit IPR013611 Transport-associated OB, type 2 IPR029058 Alpha/Beta hydrolase fold IPR000073 Alpha/beta hydrolase fold-1 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal IPR012089 tRNA-cytidine(32) 2-sulfurtransferase IPR035107 tRNA thiolation protein, TtcA/Ctu1 type IPR006016 UspA IPR018490 Cyclic nucleotide-binding-like IPR000595 Cyclic nucleotide-binding domain IPR012318 Crp-type HTH domain IPR014710 RmlC-like jelly roll fold IPR018335 Transcription regulator HTH, Crp-type, conserved site IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR023299 P-type ATPase, cytoplasmic domain N IPR018303 P-type ATPase, phosphorylation site IPR023298 P-type ATPase, transmembrane domain superfamily IPR008250 P-type ATPase, A domain superfamily IPR036412 HAD-like superfamily IPR023214 HAD superfamily IPR017969 Heavy-metal-associated, conserved site IPR006121 Heavy metal-associated domain, HMA IPR036163 Heavy metal-associated domain superfamily IPR027256 P-type ATPase, subfamily IB IPR001757 P-type ATPase IPR032858 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal IPR038414 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal domain superfamily IPR009056 Cytochrome c-like domain IPR036909 Cytochrome c-like domain superfamily IPR008168 Cytochrome c, class IC IPR004678 Cytochrome c oxidase cbb3-type, subunit III IPR023616 Cytochrome c oxidase-like, subunit I domain IPR036927 Cytochrome c oxidase-like, subunit I superfamily IPR000883 Cytochrome c oxidase subunit I IPR023615 Cytochrome c oxidase, subunit I, copper-binding site IPR004677 Cytochrome c oxidase cbb3-type, subunit I IPR011006 CheY-like superfamily IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR015387 LuxQ, periplasmic IPR035965 PAS domain superfamily IPR029151 Periplasmic sensor-like domain superfamily IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR001789 Signal transduction response regulator, receiver domain IPR041692 HHH domain 9 IPR012340 Nucleic acid-binding, OB-fold IPR012337 Ribonuclease H-like superfamily IPR010994 RuvA domain 2-like IPR022967 RNA-binding domain, S1 IPR003029 S1 domain IPR023323 Tex-like domain superfamily IPR023319 Tex-like protein, HTH domain superfamily IPR018974 Tex-like protein, N-terminal IPR032639 Tex protein, YqgF-like domain IPR006641 YqgF/RNase H-like domain IPR037027 YqgF/RNase H-like domain superfamily IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily IPR018151 Transcription elongation factor, GreA/GreB, conserved site IPR028624 Transcription elongation factor GreA/GreB IPR001437 Transcription elongation factor, GreA/GreB, C-terminal IPR023459 Transcription elongation factor GreA/GreB family IPR022691 Transcription elongation factor, GreA/GreB, N-terminal IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily IPR006358 Transcription elongation factor GreB IPR008766 Replication gene A protein IPR008766 Replication gene A protein IPR013321 Arc-type ribbon-helix-helix IPR009390 Macrodomain Ter protein, MatP IPR035375 MatP, C-terminal ribbon-helix-helix domain IPR035087 MatP, N-terminal IPR038339 MatP, N-terminal domain superfamily IPR011006 CheY-like superfamily IPR001867 OmpR/PhoB-type DNA-binding domain IPR016032 Signal transduction response regulator, C-terminal effector IPR001789 Signal transduction response regulator, receiver domain IPR039420 Transcriptional regulatory protein WalR-like IPR036388 Winged helix-like DNA-binding domain superfamily IPR011006 CheY-like superfamily IPR001867 OmpR/PhoB-type DNA-binding domain IPR016032 Signal transduction response regulator, C-terminal effector IPR001789 Signal transduction response regulator, receiver domain IPR039420 Transcriptional regulatory protein WalR-like IPR036388 Winged helix-like DNA-binding domain superfamily IPR041699 Lon protease, AAA domain IPR008269 Peptidase S16, Lon proteolytic domain IPR027065 Lon protease IPR020568 Ribosomal protein S5 domain 2-type fold IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup IPR041699 Lon protease, AAA domain IPR008269 Peptidase S16, Lon proteolytic domain IPR027065 Lon protease IPR020568 Ribosomal protein S5 domain 2-type fold IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ IPR029069 HotDog domain superfamily IPR007040 Ribosome modulation factor IPR023200 Ribosome modulation factor domain superfamily IPR003593 AAA+ ATPase domain IPR032524 ABC transporter Uup, C-terminal IPR032781 ABC-transporter extension domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily IPR017244 Ribosomal RNA large subunit methyltransferase K/L IPR002052 DNA methylase, N-6 adenine-specific, conserved site IPR000241 Putative RNA methylase domain IPR019614 S-adenosylmethionine-dependent methyltransferase IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR004114 THUMP domain IPR009809 Cell division protein ZapC IPR003660 HAMP domain IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR013785 Aldolase-type TIM barrel IPR005720 Dihydroorotate dehydrogenase domain IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 IPR005719 Dihydroorotate dehydrogenase, class 2 IPR001295 Dihydroorotate dehydrogenase, conserved site IPR036291 NAD(P)-binding domain superfamily IPR028971 NAD-glutamate dehydrogenase IPR007780 NAD-glutamate dehydrogenase, bacteria IPR042097 Aminopeptidase N-like , N-terminal IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase IPR014782 Peptidase M1, membrane alanine aminopeptidase IPR012779 Peptidase M1, alanyl aminopeptidase IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold IPR027268 Peptidase M4/M1, CTD superfamily IPR029045 ClpP/crotonase-like domain superfamily IPR001478 PDZ domain IPR036034 PDZ superfamily IPR004447 C-terminal-processing peptidase S41A IPR005151 Tail specific protease IPR020992 Tail specific protease, C-terminal IPR040573 Tail specific protease, N-terminal domain IPR023529 RNA chaperone ProQ IPR016103 ProQ/FinO domain IPR036442 ProQ/FinO domain superfamily IPR035236 RNA chaperone ProQ, C-terminal IPR000614 Free Met sulfoxide reductase conserved site IPR003018 GAF domain IPR029016 GAF-like domain superfamily IPR003593 AAA+ ATPase domain IPR011527 ABC transporter type 1, transmembrane domain IPR036640 ABC transporter type 1, transmembrane domain superfamily IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR039421 Type I protein exporter IPR006042 Xanthine/uracil permease IPR006043 Xanthine/uracil/vitamin C permease IPR011031 Multihaem cytochrome IPR007498 Intermembrane transport protein PqiA-like IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type IPR003399 Mce/MlaD IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site IPR031341 Ribosomal RNA small subunit methyltransferase F, N-terminal IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type IPR027391 rRNA small subunit methyltransferase F, RNA-binding PUA-like domain IPR011023 Nop2p IPR023267 RNA (C5-cytosine) methyltransferase IPR023545 rRNA small subunit methyltransferase F IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR013785 Aldolase-type TIM barrel IPR006218 DAHP synthetase I/KDSA IPR006219 DHAP synthase, class 1 IPR007551 Protein of unknown function DUF520 IPR035571 UPF0234-like, C-terminal IPR035570 UPF0234, N-terminal IPR036183 YajQ-like superfamily IPR000878 Tetrapyrrole methylase IPR035996 Tetrapyrrole methylase superfamily IPR014777 Tetrapyrrole methylase, subdomain 1 IPR014776 Tetrapyrrole methylase, subdomain 2 IPR006366 Uroporphyrin-III C-methyltransferase IPR036291 NAD(P)-binding domain superfamily IPR037115 Sirohaem synthase, dimerisation domain superfamily IPR012409 Sirohaem synthase IPR028281 Siroheme synthase, central domain IPR019478 Sirohaem synthase, dimerisation domain IPR006367 Sirohaem synthase, N-terminal IPR003043 Uroporphiryn-III C-methyltransferase, conserved site IPR004609 ATP-dependent DNA helicase RecG IPR011545 DEAD/DEAH box helicase domain IPR014001 Helicase superfamily 1/2, ATP-binding domain IPR001650 Helicase, C-terminal IPR012340 Nucleic acid-binding, OB-fold IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR033454 RecG, wedge domain IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter IPR018313 Solute-binding protein family 3, conserved site IPR001638 Solute-binding protein family 3/N-terminal domain of MltF IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR003593 AAA+ ATPase domain IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR003593 AAA+ ATPase domain IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR006214 Bax inhibitor 1-related IPR042072 DsrC-like protein, C-terminal domain IPR025526 DsrC-like domain superfamily IPR007453 Sulphur transfer protein DsrC/TusE IPR020456 Acylphosphatase IPR001792 Acylphosphatase-like domain IPR036046 Acylphosphatase-like domain superfamily IPR017968 Acylphosphatase, conserved site IPR002478 PUA domain IPR015947 PUA-like superfamily IPR036974 PUA domain superfamily IPR041532 RlmI, PUA-like domain IPR023542 rRNA large subunit methyltransferase I IPR019614 S-adenosylmethionine-dependent methyltransferase IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR029028 Alpha/beta knot methyltransferases IPR022724 RNA methyltransferase, SpoU/TrmH type, C-terminal IPR001537 tRNA/rRNA methyltransferase, SpoU type IPR033671 tRNA (guanosine(18)-2'-O)-methyltransferase IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal IPR018317 Queuosine biosynthesis protein QueC IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR024924 7-carboxy-7-deazaguanine synthase-like IPR013785 Aldolase-type TIM barrel IPR007197 Radical SAM IPR027609 Putative 7-carboxy-7-deazaguanine synthase QueE, Proteobacteria IPR002912 ACT domain IPR012675 Beta-grasp domain superfamily IPR003607 HD/PDEase domain IPR004811 RelA/SpoT family IPR007685 RelA/SpoT IPR004095 TGS IPR012676 TGS-like IPR033655 RelA, TGS domain IPR000150 Cof family IPR036412 HAD-like superfamily IPR006379 HAD-superfamily hydrolase, subfamily IIB IPR023214 HAD superfamily IPR009003 Peptidase S1, PA clan IPR001314 Peptidase S1A, chymotrypsin family IPR001254 Serine proteases, trypsin domain IPR018114 Serine proteases, trypsin family, histidine active site IPR033116 Serine proteases, trypsin family, serine active site IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain IPR025110 AMP-binding enzyme, C-terminal domain IPR020845 AMP-binding, conserved site IPR000873 AMP-dependent synthetase/ligase IPR042099 AMP-dependent synthetase-like superfamily IPR012709 2-methyl-aconitate isomerase PrpF IPR007400 PrpF protein IPR012708 2-methylisocitrate dehydratase AcnD, Fe/S-dependent IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel IPR006249 Aconitase/Iron-responsive element-binding protein 2 IPR036008 Aconitase, iron-sulfur domain IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain IPR011278 2-methylcitrate synthase/citrate synthase type I IPR016142 Citrate synthase-like, large alpha subdomain IPR016143 Citrate synthase-like, small alpha subdomain IPR002020 Citrate synthase IPR019810 Citrate synthase active site IPR024176 Citrate synthase, bacterial-type IPR036969 Citrate synthase superfamily IPR039556 ICL/PEPM domain IPR018523 Isocitrate lyase/phosphorylmutase, conserved site IPR012695 2-methylisocitrate lyase IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily IPR040442 Pyruvate kinase-like domain superfamily IPR002068 Alpha crystallin/Hsp20 domain IPR037913 Small heat shock protein IbpA/IbpB, ACD domain IPR008978 HSP20-like chaperone IPR023728 Small heat shock protein IbpA IPR003716 DNA-directed RNA polymerase, omega subunit IPR006110 RNA polymerase, subunit omega/K/RPB6 IPR012293 RNA polymerase subunit, RPB6/omega IPR036161 RPB6/omega subunit-like superfamily IPR002823 Protein of unknown function DUF112, transmembrane IPR002781 Transmembrane protein TauE-like IPR002781 Transmembrane protein TauE-like IPR008898 YopD-like IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD IPR016379 Type III secretion system, low calcium response, chaperone LcrH/SycD, subgroup IPR011716 Tetratricopeptide TPR-3 IPR013026 Tetratricopeptide repeat-containing domain IPR011990 Tetratricopeptide-like helical domain superfamily IPR005413 Low calcium response V antigen IPR036139 Virulence-associated V antigen superfamily IPR008145 Guanylate kinase/L-type calcium channel beta subunit IPR008144 Guanylate kinase-like domain IPR017665 Guanylate kinase IPR020590 Guanylate kinase, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR009863 Type III secretion protein, LcrG IPR022797 Type III secretion system regulator LcrR/Chaperone CesD2 IPR013405 Type III secretion system regulator, LcrR IPR042194 FHIPEP, domain 1 IPR042193 FHIPEP, domain 3 IPR042196 FHIPEP, domain 4 IPR025505 FHIPEP conserved site IPR001712 Type III secretion system FHIPEP IPR006302 Type III secretion protein HrcV IPR015144 Type III secretion system effector delivery regulator TyeA IPR013351 Type III secretion system effector delivery regulator TyeA-related IPR038347 TyeA superfamily IPR010812 Hypersensitivity response secretion-like, HrpJ IPR013401 Type III secretion regulator, YopN/LcrE/InvE/MxiC IPR003593 AAA+ ATPase domain IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain IPR005714 ATPase, type III secretion system, FliI/YscN IPR013380 ATPase, type III secretion system, H+-transporting IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR040627 T3SS EscN ATPase, C-terminal IPR001543 Surface presentation of antigen (SpoA) IPR036429 SpoA-like superfamily IPR003283 Type III secretion system outer membrane, SpaO IPR013385 Type III secretion system apparatus protein YscQ/HrcQ/SpaO IPR005838 Type III secretion system inner membrane P protein IPR005773 Yop virulence translocation protein R IPR002191 Bacterial export protein family 3 IPR006306 Type III secretion protein HrpO IPR002010 Type III secretion system inner membrane R protein IPR006304 Type III secretion protein SpaR/YscT IPR006307 Type III exporter system, secretion apparatus protein BsaZ IPR006135 Type III secretion system substrate exporter IPR029025 Type III secretion system substrate exporter, C-terminal IPR006307 Type III exporter system, secretion apparatus protein BsaZ IPR006135 Type III secretion system substrate exporter IPR029025 Type III secretion system substrate exporter, C-terminal IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR029058 Alpha/Beta hydrolase fold IPR022742 Serine aminopeptidase, S33 IPR029058 Alpha/Beta hydrolase fold IPR022742 Serine aminopeptidase, S33 IPR003812 Fido domain IPR036597 Fido-like domain superfamily IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE IPR012842 Type III secretion system HrpE/YscL IPR003400 Biopolymer transport protein ExbD/TolR IPR003400 Biopolymer transport protein ExbD/TolR IPR006182 Secretory protein YscJ/FliF IPR003282 Type III secretion system lipoprotein HrcJ/YscJ IPR012670 Type III secretion system, YscI/HrpB IPR013348 Type III secretion system YscG IPR011990 Tetratricopeptide-like helical domain superfamily IPR021123 Type III secretion, needle-protein-like IPR037203 Type III secretion, needle-protein-like superfamily IPR011841 Type III secretion system, needle protein IPR000253 Forkhead-associated (FHA) domain IPR008984 SMAD/FHA domain superfamily IPR012843 Type III secretion system YscD/HrpQ IPR032030 YscD, cytoplasmic domain IPR032034 Yop protein translocation protein D, periplasmic domain IPR005644 NolW-like IPR038591 NolW-like superfamily IPR004846 Type II/III secretion system IPR004845 Type II secretion system GspD, conserved site IPR003522 Type III secretion system outer membrane pore YscC/HrcC IPR009057 Homeobox-like domain superfamily IPR018060 DNA binding HTH domain, AraC-type IPR018062 HTH domain AraC-type, conserved site IPR014710 RmlC-like jelly roll fold IPR020449 Transcription regulator HTH, AraC- type IPR002898 MotA/TolQ/ExbB proton channel IPR002898 MotA/TolQ/ExbB proton channel IPR002898 MotA/TolQ/ExbB proton channel IPR016161 Aldehyde/histidinol dehydrogenase IPR016163 Aldehyde dehydrogenase, C-terminal IPR016160 Aldehyde dehydrogenase, cysteine active site IPR029510 Aldehyde dehydrogenase, glutamic acid active site IPR016162 Aldehyde dehydrogenase, N-terminal IPR015590 Aldehyde dehydrogenase domain IPR003593 AAA+ ATPase domain IPR003018 GAF domain IPR029016 GAF-like domain superfamily IPR009057 Homeobox-like domain superfamily IPR002197 DNA binding HTH domain, Fis-type IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR002078 RNA polymerase sigma factor 54 interaction domain IPR025662 Sigma-54 interaction domain, ATP-binding site 1 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 IPR025944 Sigma-54 interaction domain, conserved site IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily IPR013328 6-phosphogluconate dehydrogenase, domain 2 IPR006114 6-phosphogluconate dehydrogenase, C-terminal IPR006113 6-phosphogluconate dehydrogenase, decarboxylating IPR006115 6-phosphogluconate dehydrogenase, NADP-binding IPR006184 6-phosphogluconate-binding site IPR036291 NAD(P)-binding domain superfamily IPR006183 6-phosphogluconate dehydrogenase IPR005900 6-phosphogluconolactonase, DevB-type IPR006148 Glucosamine/galactosamine-6-phosphate isomerase IPR037171 NagB/RpiA transferase-like IPR039104 6-Phosphogluconolactonase IPR001282 Glucose-6-phosphate dehydrogenase IPR019796 Glucose-6-phosphate dehydrogenase, active site IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding IPR036291 NAD(P)-binding domain superfamily IPR011006 CheY-like superfamily IPR024187 Signal transduction response regulator, citrate/malate metabolism IPR001789 Signal transduction response regulator, receiver domain IPR028141 Transcriptional regulator IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR000014 PAS domain IPR035965 PAS domain superfamily IPR013767 PAS fold IPR033463 Single cache domain 3 IPR029151 Periplasmic sensor-like domain superfamily IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB IPR039506 SpoOB, alpha-helical domain IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR000014 PAS domain IPR035965 PAS domain superfamily IPR013767 PAS fold IPR033463 Single cache domain 3 IPR029151 Periplasmic sensor-like domain superfamily IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB IPR039506 SpoOB, alpha-helical domain IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain IPR009056 Cytochrome c-like domain IPR036909 Cytochrome c-like domain superfamily IPR004852 Di-haem cytochrome c peroxidase IPR026259 Di-c-type haem protein, MauG/cytochrome c peroxidase IPR036393 Acetylglutamate kinase-like superfamily IPR001048 Aspartate/glutamate/uridylate kinase IPR027795 CASTOR, ACT domain IPR010462 Ectoine synthase IPR014710 RmlC-like jelly roll fold IPR011051 RmlC-like cupin domain superfamily IPR005814 Aminotransferase class-III IPR004637 2,4-diaminobutyrate 4-transaminase IPR012773 Ectoine biosynthetic protein IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR016181 Acyl-CoA N-acyltransferase IPR012772 L-2,4-diaminobutyric acid acetyltransferase IPR000182 GNAT domain IPR000060 BCCT transporter family IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR000644 CBS domain IPR005892 Glycine betaine transport ATP-binding subunit IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR007210 ABC-type glycine betaine transport system, substrate-binding domain IPR010101 TonB-dependent vitamin B12 transporter BtuB IPR039426 Vitamin B12 transporter BtuB-like IPR012910 TonB-dependent receptor, plug domain IPR037066 TonB-dependent receptor, plug domain superfamily IPR000531 TonB-dependent receptor-like, beta-barrel IPR010916 TonB box, conserved site IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily IPR010917 TonB-dependent receptor, conserved site IPR020845 AMP-binding, conserved site IPR000873 AMP-dependent synthetase/ligase IPR042099 AMP-dependent synthetase-like superfamily IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase IPR036291 NAD(P)-binding domain superfamily IPR020904 Short-chain dehydrogenase/reductase, conserved site IPR002347 Short-chain dehydrogenase/reductase SDR IPR011006 CheY-like superfamily IPR001867 OmpR/PhoB-type DNA-binding domain IPR001789 Signal transduction response regulator, receiver domain IPR039420 Transcriptional regulatory protein WalR-like IPR036388 Winged helix-like DNA-binding domain superfamily IPR013727 Two-component sensor kinase, N-terminal IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR017850 Alkaline-phosphatase-like, core domain superfamily IPR012160 Lipoteichoic acid synthase-like IPR000917 Sulfatase, N-terminal IPR001463 Sodium:alanine symporter IPR001123 Amino acid exporter protein, LeuE-type IPR001123 Amino acid exporter protein, LeuE-type IPR001123 Amino acid exporter protein, LeuE-type IPR001333 Peptidase M32, carboxypeptidase Taq IPR004960 Bacterial lipid A biosynthesis acyltransferase IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase IPR004960 Bacterial lipid A biosynthesis acyltransferase IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase IPR004960 Bacterial lipid A biosynthesis acyltransferase IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase IPR002293 Amino acid/polyamine transporter I IPR004839 Aminotransferase, class I/classII IPR015424 Pyridoxal phosphate-dependent transferase IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR029062 Class I glutamine amidotransferase-like IPR005697 Homoserine O-succinyltransferase MetA IPR033752 MetA family IPR013360 Pilus biogenesis/stability type IV, PilW IPR013026 Tetratricopeptide repeat-containing domain IPR011990 Tetratricopeptide-like helical domain superfamily IPR019734 Tetratricopeptide repeat IPR011006 CheY-like superfamily IPR003660 HAMP domain IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR019247 Histidine kinase BarA, N-terminal IPR036641 HPT domain superfamily IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain IPR001789 Signal transduction response regulator, receiver domain IPR001451 Hexapeptide repeat IPR018357 Hexapeptide transferase, conserved site IPR039369 Galactoside O-acetyltransferase LacA-like IPR024688 Maltose/galactoside acetyltransferase IPR011004 Trimeric LpxA-like superfamily IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR025966 Oligopeptide transport permease C-like, N-terminal domain IPR008173 Adenylyl cyclase CyaB IPR033469 CYTH-like domain superfamily IPR023577 CYTH domain IPR007351 Uncharacterised protein YjbR IPR038056 YjbR-like superfamily IPR000835 MarR-type HTH domain IPR023187 Transcriptional regulator MarR-type, conserved site IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR009057 Homeobox-like domain superfamily IPR018060 DNA binding HTH domain, AraC-type IPR018062 HTH domain AraC-type, conserved site IPR020449 Transcription regulator HTH, AraC- type IPR009057 Homeobox-like domain superfamily IPR018060 DNA binding HTH domain, AraC-type IPR018062 HTH domain AraC-type, conserved site IPR020449 Transcription regulator HTH, AraC- type IPR002318 Alanine-tRNA ligase, class IIc IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily IPR018165 Alanyl-tRNA synthetase, class IIc, core domain IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal IPR023033 Alanine-tRNA ligase, eukaryota/bacteria IPR003156 DHHA1 domain IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily IPR009000 Translation protein, beta-barrel domain superfamily IPR012947 Threonyl/alanyl tRNA synthetase, SAD IPR001633 EAL domain IPR035919 EAL domain superfamily IPR016032 Signal transduction response regulator, C-terminal effector IPR000792 Transcription regulator LuxR, C-terminal IPR036388 Winged helix-like DNA-binding domain superfamily IPR030678 Peptide/nickel binding protein, MppA-type IPR039424 Solute-binding protein family 5 IPR023765 Solute-binding protein family 5, conserved site IPR000914 Solute-binding protein family 5 domain IPR030678 Peptide/nickel binding protein, MppA-type IPR039424 Solute-binding protein family 5 IPR023765 Solute-binding protein family 5, conserved site IPR000914 Solute-binding protein family 5 domain IPR001667 DDH domain IPR038763 DHH phosphoesterase superfamily IPR004097 DHHA2 domain IPR038222 DHHA2 domain superfamily IPR022934 Manganese-dependent inorganic pyrophosphatase, probable IPR004632 4-aminobutyrate aminotransferase, bacterial IPR005814 Aminotransferase class-III IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR016161 Aldehyde/histidinol dehydrogenase IPR016163 Aldehyde dehydrogenase, C-terminal IPR016160 Aldehyde dehydrogenase, cysteine active site IPR029510 Aldehyde dehydrogenase, glutamic acid active site IPR016162 Aldehyde dehydrogenase, N-terminal IPR015590 Aldehyde dehydrogenase domain IPR010102 Succinate semialdehyde dehydrogenase IPR017754 Agmatine deiminase IPR007466 Peptidyl-arginine deiminase, Porphyromonas-type IPR003010 Carbon-nitrogen hydrolase IPR036526 Carbon-nitrogen hydrolase superfamily IPR006076 FAD dependent oxidoreductase IPR036188 FAD/NAD(P)-binding domain superfamily IPR006076 FAD dependent oxidoreductase IPR036188 FAD/NAD(P)-binding domain superfamily IPR016161 Aldehyde/histidinol dehydrogenase IPR016163 Aldehyde dehydrogenase, C-terminal IPR016160 Aldehyde dehydrogenase, cysteine active site IPR029510 Aldehyde dehydrogenase, glutamic acid active site IPR016162 Aldehyde dehydrogenase, N-terminal IPR015590 Aldehyde dehydrogenase domain IPR016161 Aldehyde/histidinol dehydrogenase IPR016163 Aldehyde dehydrogenase, C-terminal IPR016160 Aldehyde dehydrogenase, cysteine active site IPR029510 Aldehyde dehydrogenase, glutamic acid active site IPR016162 Aldehyde dehydrogenase, N-terminal IPR015590 Aldehyde dehydrogenase domain IPR001387 Cro/C1-type helix-turn-helix domain IPR013096 Cupin 2, conserved barrel IPR010982 Lambda repressor-like, DNA-binding domain superfamily IPR014710 RmlC-like jelly roll fold IPR011051 RmlC-like cupin domain superfamily IPR029062 Class I glutamine amidotransferase-like IPR017926 Glutamine amidotransferase IPR011697 Peptidase C26 IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR036651 Glutamine synthetase, N-terminal domain superfamily IPR014746 Glutamine synthetase/guanido kinase, catalytic domain IPR008146 Glutamine synthetase, catalytic domain IPR027303 Glutamine synthetase, glycine-rich site IPR025948 HTH-like domain IPR001584 Integrase, catalytic core IPR012337 Ribonuclease H-like superfamily IPR036397 Ribonuclease H superfamily IPR009057 Homeobox-like domain superfamily IPR002514 Transposase IS3/IS911family IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR006056 RidA family IPR019897 RidA, conserved site IPR035959 RutC-like superfamily IPR006175 YjgF/YER057c/UK114 family IPR005229 Conserved hypothetical protein CHP00255 IPR013551 Domain of unknown function DUF1732 IPR013527 YicC-like, N-terminal IPR000157 Toll/interleukin-1 receptor homology (TIR) domain IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily IPR001247 Exoribonuclease, phosphorolytic domain 1 IPR015847 Exoribonuclease, phosphorolytic domain 2 IPR036345 Exoribonuclease, PH domain 2 superfamily IPR027408 PNPase/RNase PH domain superfamily IPR020568 Ribosomal protein S5 domain 2-type fold IPR002381 Ribonuclease PH, bacterial-type IPR018336 Ribonuclease PH, conserved site IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily IPR009614 Toxin YoeB IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM IPR036165 YefM-like superfamily IPR025202 Phospholipase D-like domain IPR001736 Phospholipase D/Transphosphatidylase IPR023031 Orotate phosphoribosyltransferase IPR004467 Orotate phosphoribosyl transferase domain IPR000836 Phosphoribosyltransferase domain IPR029057 Phosphoribosyltransferase-like IPR014635 Alpha-amylase, MalS type IPR006047 Glycosyl hydrolase, family 13, catalytic domain IPR017853 Glycoside hydrolase superfamily IPR014635 Alpha-amylase, MalS type IPR006047 Glycosyl hydrolase, family 13, catalytic domain IPR017853 Glycoside hydrolase superfamily IPR009057 Homeobox-like domain superfamily IPR001647 DNA-binding HTH domain, TetR-type IPR023769 Nucleoid occlusion factor SlmA IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily IPR035929 CoaB-like superfamily IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal IPR036551 Flavin prenyltransferase-like IPR003382 Flavoprotein IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain IPR037523 Vicinal oxygen chelate (VOC) domain IPR011010 DNA breaking-rejoining enzyme, catalytic core IPR013762 Integrase-like, catalytic domain superfamily IPR002104 Integrase, catalytic domain IPR011946 Integrase, integron-type IPR010998 Integrase/recombinase, N-terminal IPR004107 Integrase, SAM-like, N-terminal IPR016181 Acyl-CoA N-acyltransferase IPR000182 GNAT domain IPR003593 AAA+ ATPase domain IPR002912 ACT domain IPR009057 Homeobox-like domain superfamily IPR030828 TyrR family, helix-turn-helix domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR000014 PAS domain IPR035965 PAS domain superfamily IPR002078 RNA polymerase sigma factor 54 interaction domain IPR025662 Sigma-54 interaction domain, ATP-binding site 1 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 IPR025944 Sigma-54 interaction domain, conserved site IPR021147 Protein of unknown function DUF697 IPR006507 Uncharacterised protein family UPF0283 IPR007413 Protein of unknown function DUF463, YcjX-like protein IPR005802 Aminodeoxychorismate synthase, component I IPR005801 ADC synthase IPR019999 Anthranilate synthase component I-like IPR006805 Anthranilate synthase component I, N-terminal IPR015890 Chorismate-utilising enzyme, C-terminal IPR011006 CheY-like superfamily IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR015387 LuxQ, periplasmic IPR035965 PAS domain superfamily IPR029151 Periplasmic sensor-like domain superfamily IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR001789 Signal transduction response regulator, receiver domain IPR011006 CheY-like superfamily IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR015387 LuxQ, periplasmic IPR035965 PAS domain superfamily IPR029151 Periplasmic sensor-like domain superfamily IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR001789 Signal transduction response regulator, receiver domain IPR011006 CheY-like superfamily IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR015387 LuxQ, periplasmic IPR035965 PAS domain superfamily IPR029151 Periplasmic sensor-like domain superfamily IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR001789 Signal transduction response regulator, receiver domain IPR011006 CheY-like superfamily IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR015387 LuxQ, periplasmic IPR035965 PAS domain superfamily IPR029151 Periplasmic sensor-like domain superfamily IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR001789 Signal transduction response regulator, receiver domain IPR015797 NUDIX hydrolase-like domain superfamily IPR000086 NUDIX hydrolase domain IPR000059 NUDIX hydrolase, NudL, conserved site IPR023735 Uncharacterised nudix hydrolase NudL IPR018227 Amino acid/polyamine transporter 2 IPR004694 Hydroxy amino acid transporter IPR018227 Amino acid/polyamine transporter 2 IPR004694 Hydroxy amino acid transporter IPR004090 Chemotaxis methyl-accepting receptor IPR003660 HAMP domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR033480 Single Cache domain 2 IPR000727 Target SNARE coiled-coil homology domain IPR004090 Chemotaxis methyl-accepting receptor IPR003660 HAMP domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR033480 Single Cache domain 2 IPR000727 Target SNARE coiled-coil homology domain IPR004090 Chemotaxis methyl-accepting receptor IPR003660 HAMP domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR033480 Single Cache domain 2 IPR000727 Target SNARE coiled-coil homology domain IPR029009 Allosteric substrate binding domain superfamily IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form IPR005130 Serine dehydratase-like, alpha subunit IPR005131 Serine dehydratase beta chain IPR036046 Acylphosphatase-like domain superfamily IPR007024 BLUF domain IPR001633 EAL domain IPR035919 EAL domain superfamily IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily IPR012156 Cold shock, CspA IPR011129 Cold shock domain IPR019844 Cold-shock (CSD) domain IPR002059 Cold-shock protein, DNA-binding IPR012340 Nucleic acid-binding, OB-fold IPR012156 Cold shock, CspA IPR011129 Cold shock domain IPR019844 Cold-shock (CSD) domain IPR002059 Cold-shock protein, DNA-binding IPR012340 Nucleic acid-binding, OB-fold IPR037518 MPN domain IPR025657 RadC-like JAB domain IPR010994 RuvA domain 2-like IPR001405 Uncharacterised protein family UPF0758 IPR020891 Uncharacterised protein family UPF0758, conserved site IPR011129 Cold shock domain IPR040476 RNase II/RNase R, cold shock domain IPR012340 Nucleic acid-binding, OB-fold IPR013223 Ribonuclease B, N-terminal OB domain IPR001900 Ribonuclease II/R IPR022966 Ribonuclease II/R, conserved site IPR004476 Ribonuclease II/ribonuclease R IPR011805 Ribonuclease R IPR013668 Ribonuclease R winged-helix domain IPR022967 RNA-binding domain, S1 IPR003029 S1 domain IPR004090 Chemotaxis methyl-accepting receptor IPR003660 HAMP domain IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR000727 Target SNARE coiled-coil homology domain IPR004090 Chemotaxis methyl-accepting receptor IPR003660 HAMP domain IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR000727 Target SNARE coiled-coil homology domain IPR004090 Chemotaxis methyl-accepting receptor IPR003660 HAMP domain IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR000727 Target SNARE coiled-coil homology domain IPR004090 Chemotaxis methyl-accepting receptor IPR003660 HAMP domain IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR000727 Target SNARE coiled-coil homology domain IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) IPR006195 Aminoacyl-tRNA synthetase, class II IPR004522 Asparagine-tRNA ligase IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb IPR012340 Nucleic acid-binding, OB-fold IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type IPR004839 Aminotransferase, class I/classII IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR000524 Transcription regulator HTH, GntR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR004839 Aminotransferase, class I/classII IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR000524 Transcription regulator HTH, GntR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR034704 L28p-like IPR026569 Ribosomal protein L28/L24 IPR037147 Ribosomal protein L28/L24 superfamily IPR001383 Ribosomal protein L28 IPR004839 Aminotransferase, class I/classII IPR000796 Aspartate/other aminotransferase IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR003660 HAMP domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR003660 HAMP domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR003660 HAMP domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR018093 BCCT transporter, conserved site IPR000060 BCCT transporter family IPR000835 MarR-type HTH domain IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR011006 CheY-like superfamily IPR016032 Signal transduction response regulator, C-terminal effector IPR001789 Signal transduction response regulator, receiver domain IPR000792 Transcription regulator LuxR, C-terminal IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR033480 Single Cache domain 2 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain IPR017171 Signal transduction histidine kinase, MctS IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit IPR004681 TRAP transporter large membrane protein DctM IPR038584 Ribosomal protein L33 superfamily IPR001705 Ribosomal protein L33 IPR018264 Ribosomal protein L33, conserved site IPR011332 Zinc-binding ribosomal protein IPR026289 Solute binding protein, TakP-like IPR041722 Alpha-keto acid binding periplasmic protein IPR018389 TRAP transporter solute receptor DctP/TeaA IPR038404 TRAP transporter solute receptor DctP superfamily IPR001279 Metallo-beta-lactamase IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like IPR010275 Protein of unknown function DUF882 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily IPR006311 Twin-arginine translocation pathway, signal sequence IPR005490 L,D-transpeptidase catalytic domain IPR002477 Peptidoglycan binding-like IPR036365 PGBD-like superfamily IPR038063 L,D-transpeptidase catalytic domain-like IPR017850 Alkaline-phosphatase-like, core domain superfamily IPR040423 Phosphoethanolamine transferase IPR000917 Sulfatase, N-terminal IPR032677 GTP cyclohydrolase II IPR000926 GTP cyclohydrolase II, RibA IPR036144 RibA-like superfamily IPR005616 CcmH/CycL/Ccl2/NrfF family IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily IPR017565 Formate-dependent nitrite reductase complex, subunit NrfF IPR013026 Tetratricopeptide repeat-containing domain IPR011990 Tetratricopeptide-like helical domain superfamily IPR019734 Tetratricopeptide repeat IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE IPR013740 Redoxin IPR036249 Thioredoxin-like superfamily IPR017937 Thioredoxin, conserved site IPR013766 Thioredoxin domain IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal IPR002541 Cytochrome c assembly protein IPR003567 Cytochrome c-type biogenesis protein IPR003568 Cytochrome c-type biogenesis protein CcmF IPR003570 Cytochrome c-type biogenesis protein NrfE IPR017563 Cytochrome c nitrate reductase biogenesis protein NrfE IPR017566 NrfD IPR005614 NrfD family IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site IPR017567 Cytochrome c nitrite reductase, Fe-S protein IPR006311 Twin-arginine translocation pathway, signal sequence IPR003321 Cytochrome c552 IPR017570 Formate-dependent cytochrome c nitrite reductase, c552 subunit IPR011031 Multihaem cytochrome IPR036280 Multiheme cytochrome superfamily IPR005743 DNA gyrase, subunit A IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal IPR013760 DNA topoisomerase, type IIA-like domain superfamily IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR010233 Ubiquinone biosynthesis O-methyltransferase IPR005144 ATP-cone domain IPR013346 Ribonucleotide reductase, class I , alpha subunit IPR000788 Ribonucleotide reductase large subunit, C-terminal IPR013509 Ribonucleotide reductase large subunit, N-terminal IPR008926 Ribonucleotide reductase R1 subunit, N-terminal IPR039718 Ribonucleoside-diphosphate reductase large subunit IPR009078 Ferritin-like superfamily IPR012348 Ribonucleotide reductase-like IPR033909 Ribonucleotide reductase small subunit IPR030475 Ribonucleotide reductase small subunit, acitve site IPR000358 Ribonucleotide reductase small subunit family IPR036653 CinA-like, C-terminal IPR008135 Competence-induced protein CinA IPR036425 MoaB/Mog-like domain superfamily IPR001453 MoaB/Mog domain IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site IPR020629 Formamidopyrimidine-DNA glycosylase IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain IPR035937 MutM-like, N-terminal IPR010979 Ribosomal protein S13-like, H2TH IPR000214 Zinc finger, DNA glycosylase/AP lyase-type IPR010663 Zinc finger, FPG/IleRS-type IPR009006 Alanine racemase/group IV decarboxylase, C-terminal IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal IPR005730 Carboxynorspermidine decarboxylase IPR029066 PLP-binding barrel IPR036291 NAD(P)-binding domain superfamily IPR032095 Saccharopine dehydrogenase, C-terminal IPR005097 Saccharopine dehydrogenase, NADP binding domain IPR005814 Aminotransferase class-III IPR004637 2,4-diaminobutyrate 4-transaminase IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR000462 CDP-alcohol phosphatidyltransferase IPR023762 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, bacterial IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase IPR000305 GIY-YIG endonuclease IPR035901 GIY-YIG endonuclease superfamily IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 IPR010994 RuvA domain 2-like IPR001943 UVR domain IPR036876 UVR domain superfamily IPR004791 UvrABC system, subunit C IPR001162 UvrC family homology region IPR038476 UvrC homology region 2 superfamily IPR011006 CheY-like superfamily IPR016032 Signal transduction response regulator, C-terminal effector IPR001789 Signal transduction response regulator, receiver domain IPR000792 Transcription regulator LuxR, C-terminal IPR019998 Membrane insertase YidC IPR028055 Membrane insertase YidC/Oxa1, C-terminal IPR028053 Membrane insertase YidC, N-terminal IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 IPR038210 Membrane insertase YidC, periplasmic domain IPR038221 YidC, periplasmic domain superfamily IPR008909 DALR anticodon binding IPR015944 Glycine-tRNA ligase, beta subunit IPR006194 Glycine-tRNA synthetase, heterodimeric IPR004821 Cytidyltransferase-like domain IPR001980 Phosphopantetheine adenylyltransferase IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR006172 DNA-directed DNA polymerase, family B IPR017964 DNA-directed DNA polymerase, family B, conserved site IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain IPR006134 DNA-directed DNA polymerase, family B, multifunctional domain IPR042087 DNA polymerase family B, C-terminal domain IPR023211 DNA polymerase, palm domain superfamily IPR012337 Ribonuclease H-like superfamily IPR036397 Ribonuclease H superfamily IPR015365 Elongation factor P, C-terminal IPR012340 Nucleic acid-binding, OB-fold IPR014722 Ribosomal protein L2, domain 2 IPR020599 Translation elongation factor P/YeiP IPR013185 Translation elongation factor, KOW-like IPR011897 Translation elongation factor P-like, YeiP IPR001059 Translation elongation factor P/YeiP, central IPR013852 Translation elongation factor P/YeiP, conserved site IPR008991 Translation protein SH3-like domain superfamily IPR007376 dsDNA mimic, putative IPR036763 Putative dsDNA mimic superfamily IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain IPR020103 Pseudouridine synthase, catalytic domain superfamily IPR006145 Pseudouridine synthase, RsuA/RluA IPR000748 Pseudouridine synthase, RsuA/RluB/E/F IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site IPR002942 RNA-binding S4 domain IPR036986 RNA-binding S4 domain superfamily IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily IPR006070 YrdC-like domain IPR004013 PHP domain IPR003141 Polymerase/histidinol phosphatase, N-terminal IPR016195 Polymerase/histidinol phosphatase-like IPR012639 Tryptophan operon leader peptide IPR006598 Glycosyl transferase CAP10 domain IPR005801 ADC synthase IPR019999 Anthranilate synthase component I-like IPR006805 Anthranilate synthase component I, N-terminal IPR005257 Anthranilate synthase component I, TrpE-like, bacterial IPR015890 Chorismate-utilising enzyme, C-terminal IPR029062 Class I glutamine amidotransferase-like IPR017926 Glutamine amidotransferase IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain IPR005940 Anthranilate phosphoribosyl transferase IPR000312 Glycosyl transferase, family 3 IPR017459 Glycosyl transferase family 3, N-terminal domain IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily IPR013785 Aldolase-type TIM barrel IPR013798 Indole-3-glycerol phosphate synthase IPR001468 Indole-3-glycerol phosphate synthase, conserved site IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) IPR011060 Ribulose-phosphate binding barrel IPR001926 Pyridoxal-phosphate dependent enzyme IPR006653 Tryptophan synthase, beta chain, conserved site IPR006654 Tryptophan synthase, beta chain IPR023026 Tryptophan synthase beta chain/beta chain-like IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme IPR013785 Aldolase-type TIM barrel IPR011060 Ribulose-phosphate binding barrel IPR018204 Tryptophan synthase, alpha chain, active site IPR002028 Tryptophan synthase, alpha chain IPR018490 Cyclic nucleotide-binding-like IPR018488 Cyclic nucleotide-binding, conserved site IPR000595 Cyclic nucleotide-binding domain IPR012318 Crp-type HTH domain IPR014710 RmlC-like jelly roll fold IPR018335 Transcription regulator HTH, Crp-type, conserved site IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR025110 AMP-binding enzyme, C-terminal domain IPR020459 AMP-binding IPR020845 AMP-binding, conserved site IPR000873 AMP-dependent synthetase/ligase IPR042099 AMP-dependent synthetase-like superfamily IPR001173 Glycosyltransferase 2-like IPR029044 Nucleotide-diphospho-sugar transferases IPR023954 C4-dicarboxylate transport protein IPR001991 Sodium:dicarboxylate symporter IPR018107 Sodium:dicarboxylate symporter, conserved site IPR036458 Sodium:dicarboxylate symporter superfamily IPR035304 Acyl homoserine lactone synthase IPR011006 CheY-like superfamily IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR001789 Signal transduction response regulator, receiver domain IPR006008 Intracellular septation protein A IPR040170 Cytosolic acyl coenzyme A thioester hydrolase IPR033120 Hotdog acyl-CoA thioesterase (ACOT)-type domain IPR029069 HotDog domain superfamily IPR006683 Thioesterase domain IPR011008 Dimeric alpha-beta barrel IPR005545 YCII-related IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal IPR006276 Cobalamin-independent methionine synthase IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal IPR038071 UROD/MetE-like superfamily IPR001173 Glycosyltransferase 2-like IPR029044 Nucleotide-diphospho-sugar transferases IPR005119 LysR, substrate-binding IPR037406 HTH-type transcriptional regulator MetR, PBP2 domain IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR001633 EAL domain IPR035919 EAL domain superfamily IPR003018 GAF domain IPR029016 GAF-like domain superfamily IPR000160 GGDEF domain IPR029787 Nucleotide cyclase IPR016132 Phytochrome chromophore attachment domain IPR001294 Phytochrome IPR013515 Phytochrome, central region IPR001633 EAL domain IPR035919 EAL domain superfamily IPR003018 GAF domain IPR029016 GAF-like domain superfamily IPR000160 GGDEF domain IPR029787 Nucleotide cyclase IPR016132 Phytochrome chromophore attachment domain IPR001294 Phytochrome IPR013515 Phytochrome, central region IPR001633 EAL domain IPR035919 EAL domain superfamily IPR003018 GAF domain IPR029016 GAF-like domain superfamily IPR000160 GGDEF domain IPR029787 Nucleotide cyclase IPR016132 Phytochrome chromophore attachment domain IPR001294 Phytochrome IPR013515 Phytochrome, central region IPR006638 Elp3/MiaB/NifB IPR020612 Methylthiotransferase, conserved site IPR007197 Radical SAM IPR023404 Radical SAM, alpha/beta horseshoe IPR022946 Uncharacterised protein family UPF0313 IPR024560 Uncharacterised protein family UPF0313, C-terminal IPR013704 Uncharacterised protein family UPF0313, N-terminal IPR011006 CheY-like superfamily IPR001867 OmpR/PhoB-type DNA-binding domain IPR001789 Signal transduction response regulator, receiver domain IPR039420 Transcriptional regulatory protein WalR-like IPR036388 Winged helix-like DNA-binding domain superfamily IPR003660 HAMP domain IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR002201 Glycosyl transferase, family 9 IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR005694 Efflux pump membrane protein IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain IPR030196 Multidrug resistance protein MdtN IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal IPR006276 Cobalamin-independent methionine synthase IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal IPR038071 UROD/MetE-like superfamily IPR003313 AraC-type arabinose-binding/dimerisation domain IPR009057 Homeobox-like domain superfamily IPR037923 Transcription regulator HTH-like IPR018060 DNA binding HTH domain, AraC-type IPR018062 HTH domain AraC-type, conserved site IPR000868 Isochorismatase-like IPR036380 Isochorismatase-like superfamily IPR003593 AAA+ ATPase domain IPR003838 ABC transporter permease protein domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR017911 ABC transporter, macrolide export, ATP-binding domain IPR025857 MacB-like periplasmic core domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR000829 DAGK family IPR033718 Diacylglycerol kinase, prokaryotic IPR036945 Diacylglycerol kinase (DAGK) superfamily IPR000829 DAGK family IPR033718 Diacylglycerol kinase, prokaryotic IPR036945 Diacylglycerol kinase (DAGK) superfamily IPR003593 AAA+ ATPase domain IPR003838 ABC transporter permease protein domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR017911 ABC transporter, macrolide export, ATP-binding domain IPR025857 MacB-like periplasmic core domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR003593 AAA+ ATPase domain IPR003838 ABC transporter permease protein domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR017911 ABC transporter, macrolide export, ATP-binding domain IPR025857 MacB-like periplasmic core domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain IPR030190 Macrolide export protein MacA IPR006143 RND efflux pump, membrane fusion protein IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain IPR030190 Macrolide export protein MacA IPR006143 RND efflux pump, membrane fusion protein IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD IPR030390 RNA methyltransferase TrmA, active site IPR012340 Nucleic acid-binding, OB-fold IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR002792 TRAM domain IPR010280 (Uracil-5)-methyltransferase family IPR005746 Thioredoxin IPR036249 Thioredoxin-like superfamily IPR017937 Thioredoxin, conserved site IPR013766 Thioredoxin domain IPR022826 3-deoxy-D-manno-octulosonic acid kinase IPR011009 Protein kinase-like domain superfamily IPR000719 Protein kinase domain IPR003834 Cytochrome C biogenesis protein, transmembrane domain IPR035671 DsbD gamma IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily IPR022910 Thiol:disulphide interchange protein DsbD IPR036249 Thioredoxin-like superfamily IPR017937 Thioredoxin, conserved site IPR013766 Thioredoxin domain IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site IPR006311 Twin-arginine translocation pathway, signal sequence IPR005614 NrfD family IPR009010 Aspartate decarboxylase-like domain superfamily IPR037946 Tetrathionate reductase subunit A, MopB domain IPR006657 Molybdopterin dinucleotide-binding domain IPR006656 Molybdopterin oxidoreductase IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain IPR041929 Tetrathionate reductase subunit A, N-terminal IPR009056 Cytochrome c-like domain IPR036909 Cytochrome c-like domain superfamily IPR024167 Cytochrome c4-like IPR036291 NAD(P)-binding domain superfamily IPR003869 Polysaccharide biosynthesis protein, CapD-like domain IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR036291 NAD(P)-binding domain superfamily IPR003869 Polysaccharide biosynthesis protein, CapD-like domain IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR009056 Cytochrome c-like domain IPR036909 Cytochrome c-like domain superfamily IPR007498 Intermembrane transport protein PqiA-like IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type IPR003399 Mce/MlaD IPR022839 Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase IPR003342 Glycosyl transferase family 39/83 IPR022857 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase IPR001173 Glycosyltransferase 2-like IPR029044 Nucleotide-diphospho-sugar transferases IPR001509 NAD-dependent epimerase/dehydratase IPR036291 NAD(P)-binding domain superfamily IPR030678 Peptide/nickel binding protein, MppA-type IPR039424 Solute-binding protein family 5 IPR023765 Solute-binding protein family 5, conserved site IPR000914 Solute-binding protein family 5 domain IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR013785 Aldolase-type TIM barrel IPR014732 Orotidine 5'-phosphate decarboxylase IPR018089 Orotidine 5'-phosphate decarboxylase, active site IPR001754 Orotidine 5'-phosphate decarboxylase domain IPR011060 Ribulose-phosphate binding barrel IPR030865 Lipopolysaccharide assembly protein B IPR041166 LapB, rubredoxin metal binding domain IPR013026 Tetratricopeptide repeat-containing domain IPR011990 Tetratricopeptide-like helical domain superfamily IPR019734 Tetratricopeptide repeat IPR032906 Lipopolysaccharide assembly protein A IPR010445 Lipopolysaccharide assembly protein A domain IPR000119 Histone-like DNA-binding protein IPR020816 Histone-like DNA-binding protein, conserved site IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily IPR005685 Integration host factor, beta subunit IPR012340 Nucleic acid-binding, OB-fold IPR000110 Ribosomal protein S1 IPR022967 RNA-binding domain, S1 IPR003029 S1 domain IPR003136 Cytidylate kinase IPR011994 Cytidylate kinase domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR029045 ClpP/crotonase-like domain superfamily IPR002142 Peptidase S49 IPR013703 Peptidase S49, N-terminal proteobacteria IPR036291 NAD(P)-binding domain superfamily IPR020904 Short-chain dehydrogenase/reductase, conserved site IPR002347 Short-chain dehydrogenase/reductase SDR IPR020004 UDP-N-acetylglucosamine 2-epimerase,UDP-hydrolysing IPR003331 UDP-N-acetylglucosamine 2-epimerase domain IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain IPR040982 DNA polymerase III alpha subunit finger domain IPR023073 DNA polymerase, error-prone IPR029460 DNA polymerase, helix-hairpin-helix motif IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type IPR004013 PHP domain IPR003141 Polymerase/histidinol phosphatase, N-terminal IPR004805 DNA polymerase III, alpha subunit IPR024181 Chemotaxis response regulator CheV IPR036061 CheW-like domain superfamily IPR002545 CheW-like domain IPR011006 CheY-like superfamily IPR001789 Signal transduction response regulator, receiver domain IPR024181 Chemotaxis response regulator CheV IPR036061 CheW-like domain superfamily IPR002545 CheW-like domain IPR011006 CheY-like superfamily IPR001789 Signal transduction response regulator, receiver domain IPR000600 ROK family IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR001697 Pyruvate kinase IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily IPR040442 Pyruvate kinase-like domain superfamily IPR011037 Pyruvate kinase-like, insert domain superfamily IPR018209 Pyruvate kinase, active site IPR015793 Pyruvate kinase, barrel IPR015795 Pyruvate kinase, C-terminal IPR036918 Pyruvate kinase, C-terminal domain superfamily IPR015806 Pyruvate kinase, insert domain superfamily IPR001697 Pyruvate kinase IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily IPR040442 Pyruvate kinase-like domain superfamily IPR011037 Pyruvate kinase-like, insert domain superfamily IPR018209 Pyruvate kinase, active site IPR015793 Pyruvate kinase, barrel IPR015795 Pyruvate kinase, C-terminal IPR036918 Pyruvate kinase, C-terminal domain superfamily IPR015806 Pyruvate kinase, insert domain superfamily IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase IPR002641 Patatin-like phospholipase domain IPR037483 YjjU-like IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase IPR002641 Patatin-like phospholipase domain IPR037483 YjjU-like IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase IPR002641 Patatin-like phospholipase domain IPR037483 YjjU-like IPR000175 Sodium:neurotransmitter symporter IPR037272 Sodium:neurotransmitter symporter superfamily IPR006194 Glycine-tRNA synthetase, heterodimeric IPR002310 Glycine-tRNA ligase, alpha subunit IPR006190 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal IPR036732 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain superfamily IPR013785 Aldolase-type TIM barrel IPR020007 N-acetylneuraminate synthase IPR013132 N-acetylneuraminic acid synthase, N-terminal IPR013974 SAF domain IPR036878 Glucose permease domain IIB IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site IPR003352 Phosphotransferase system, EIIC IPR013013 Phosphotransferase system, EIIC component, type 1 IPR001996 Phosphotransferase system, IIB component, type 1 IPR011299 PTS system glucose-specific IIBC component IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component IPR004622 DNA polymerase III, delta prime subunit IPR015199 DNA polymerase III, delta subunit, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR039430 Thymidylate kinase-like domain IPR018095 Thymidylate kinase, conserved site IPR018094 Thymidylate kinase IPR003770 Endolytic murein transglycosylase IPR017824 Aminodeoxychorismate lyase, class IV IPR001544 Aminotransferase class IV IPR018300 Aminotransferase, class IV, conserved site IPR036038 Aminotransferase-like, PLP-dependent enzymes IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 IPR000794 Beta-ketoacyl synthase IPR018201 Beta-ketoacyl synthase, active site IPR014031 Beta-ketoacyl synthase, C-terminal IPR014030 Beta-ketoacyl synthase, N-terminal IPR020841 Polyketide synthase, beta-ketoacyl synthase domain IPR016039 Thiolase-like IPR036736 ACP-like superfamily IPR003231 Acyl carrier protein (ACP) IPR009081 Phosphopantetheine binding ACP domain IPR006162 Phosphopantetheine attachment site IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase IPR036291 NAD(P)-binding domain superfamily IPR020904 Short-chain dehydrogenase/reductase, conserved site IPR002347 Short-chain dehydrogenase/reductase SDR IPR001227 Acyl transferase domain superfamily IPR014043 Acyl transferase IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase IPR024925 Malonyl CoA-acyl carrier protein transacylase IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type IPR016036 Malonyl-CoA ACP transacylase, ACP-binding IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 IPR016039 Thiolase-like IPR003664 Fatty acid synthesis PlsX protein IPR012281 Phospholipid biosynthesis protein, PlsX-like IPR002677 Ribosomal protein L32p IPR011332 Zinc-binding ribosomal protein IPR003772 Large ribosomal RNA subunit accumulation protein YceD IPR039255 Large ribosomal RNA subunit accumulation protein YceD, bacteria IPR029001 Inosine triphosphate pyrophosphatase-like IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein IPR020103 Pseudouridine synthase, catalytic domain superfamily IPR006225 Pseudouridine synthase, RluC/RluD IPR006224 Pseudouridine synthase, RluC/RluD, conserved site IPR006145 Pseudouridine synthase, RsuA/RluA IPR002942 RNA-binding S4 domain IPR036986 RNA-binding S4 domain superfamily IPR012340 Nucleic acid-binding, OB-fold IPR021968 Polyribonucleotide phosphorylase C-terminal IPR019307 RNA-binding protein AU-1/Ribonuclease E/G IPR028878 Ribonuclease E IPR004659 Ribonuclease E/G IPR022967 RNA-binding domain, S1 IPR003029 S1 domain IPR018045 Sulphate anion transporter, conserved site IPR011547 SLC26A/SulP transporter domain IPR001902 SLC26A/SulP transporter IPR002645 STAS domain IPR036513 STAS domain superfamily IPR023485 Phosphotyrosine protein phosphatase I IPR036196 Phosphotyrosine protein phosphatase I superfamily IPR017867 Protein-tyrosine phosphatase, low molecular weight IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR IPR025826 Cob(I)alamin adenosyltransferase N-terminal domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR011831 Glucose-1-phosphate adenylyltransferase IPR005836 ADP-glucose pyrophosphorylase, conserved site IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial IPR005835 Nucleotidyl transferase domain IPR029044 Nucleotide-diphospho-sugar transferases IPR011004 Trimeric LpxA-like superfamily IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR006083 Phosphoribulokinase/uridine kinase IPR026008 Uridine kinase IPR000764 Uridine kinase-like IPR034904 Fe-S cluster assembly domain superfamily IPR019591 Mrp/NBP35 ATP-binding protein IPR000808 Mrp, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site IPR041872 Methionyl-tRNA synthetase, anticodon-binding domain IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal IPR023458 Methionine-tRNA ligase, type 1 IPR014758 Methionyl-tRNA synthetase IPR015413 Methionyl/Leucyl tRNA synthetase IPR033911 Methioninyl-tRNA synthetase core domain IPR029038 Methionyl-tRNA synthetase, Zn-domain IPR012340 Nucleic acid-binding, OB-fold IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR002547 tRNA-binding domain IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding IPR014178 Fatty acid response transcription factor FadR IPR028374 FadR, C-terminal domain IPR008920 Transcription regulator FadR/GntR, C-terminal IPR000524 Transcription regulator HTH, GntR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR004671 Na+/H+ antiporter NhaB IPR003752 Disulphide bond formation protein DsbB/BdbC IPR022920 Disulphide bond formation protein DsbB IPR023380 DsbB-like superfamily IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR004027 SEC-C motif IPR000185 Protein translocase subunit SecA IPR020937 SecA conserved site IPR011115 SecA DEAD-like, N-terminal IPR014018 SecA motor DEAD IPR011130 SecA, preprotein cross-linking domain IPR011116 SecA Wing/Scaffold IPR036266 SecA, Wing/Scaffold superfamily IPR036670 SecA, preprotein cross-linking domain superfamily IPR013785 Aldolase-type TIM barrel IPR035587 DUS-like, FMN-binding domain IPR032886 tRNA-dihydrouridine(16) synthase IPR042270 tRNA-dihydrouridine(16) synthase, C-terminal IPR001269 tRNA-dihydrouridine synthase IPR018517 tRNA-dihydrouridine synthase, conserved site IPR003329 Acylneuraminate cytidylyltransferase IPR029044 Nucleotide-diphospho-sugar transferases IPR013830 SGNH hydrolase-type esterase domain IPR036514 SGNH hydrolase superfamily IPR006047 Glycosyl hydrolase, family 13, catalytic domain IPR004185 Glycoside hydrolase, family 13, N-terminal Ig-like domain IPR013780 Glycosyl hydrolase, all-beta IPR017853 Glycoside hydrolase superfamily IPR014756 Immunoglobulin E-set IPR017069 Maltodextrin glucosidase IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR015856 ABC transporter, CbiO/EcfA subunit IPR030946 Energy-coupling factor transporter ATP-binding protein EcfA2 IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR001851 ABC transporter, permease IPR007334 Uncharacterised protein family UPF0208 IPR004372 Acetate/propionate kinase IPR000890 Aliphatic acid kinase, short-chain IPR023865 Aliphatic acid kinase, short-chain, conserved site IPR010766 DRTGG IPR016475 Phosphate acetyltransferase, bacteria IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR004614 Phosphate acetyltransferase IPR042113 Phosphate acetyltransferase, domain 1 IPR042112 Phosphate acetyltransferase, domain 2 IPR002505 Phosphate acetyl/butaryl transferase IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily IPR025105 Domain of unknown function DUF4010 IPR010987 Glutathione S-transferase, C-terminal-like IPR036282 Glutathione S-transferase, C-terminal domain superfamily IPR040079 Glutathione Transferase family IPR004045 Glutathione S-transferase, N-terminal IPR016639 Glutathione S-transferase Omega/GSH IPR036249 Thioredoxin-like superfamily IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR025966 Oligopeptide transport permease C-like, N-terminal domain IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily IPR003448 Molybdopterin biosynthesis MoaE IPR012675 Beta-grasp domain superfamily IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp IPR003749 Sulfur carrier ThiS/MoaD-like IPR023045 Molybdenum cofactor biosynthesis C IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain IPR012245 Molybdenum cofactor biosynthesis protein MoaB IPR036425 MoaB/Mog-like domain superfamily IPR001453 MoaB/Mog domain IPR013484 Molybdenum cofactor biosynthesis protein B, proteobacteria IPR008284 Molybdenum cofactor biosynthesis, conserved site IPR005814 Aminotransferase class-III IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR013785 Aldolase-type TIM barrel IPR006638 Elp3/MiaB/NifB IPR013483 Molybdenum cofactor biosynthesis protein A IPR010505 Molybdenum cofactor synthesis C-terminal IPR007197 Radical SAM IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 IPR010119 Gluconeogenesis factor IPR038136 Gluconeogenesis factor superfamily IPR036641 HPT domain superfamily IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain IPR003593 AAA+ ATPase domain IPR011006 CheY-like superfamily IPR009057 Homeobox-like domain superfamily IPR002197 DNA binding HTH domain, Fis-type IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR001789 Signal transduction response regulator, receiver domain IPR002078 RNA polymerase sigma factor 54 interaction domain IPR025943 Sigma-54 interaction domain, ATP-binding site 2 IPR025944 Sigma-54 interaction domain, conserved site IPR006935 Helicase/UvrB, N-terminal IPR014001 Helicase superfamily 1/2, ATP-binding domain IPR001650 Helicase, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR001943 UVR domain IPR036876 UVR domain superfamily IPR004807 UvrABC system, subunit B IPR041471 UvrB, interaction domain IPR024759 UvrB, YAD/RRR-motif-containing domain IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA IPR003667 NqrDE/RnfAE IPR007202 4Fe-4S domain IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site IPR009051 Alpha-helical ferredoxin IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily IPR026902 RnfC Barrel sandwich hybrid domain IPR019554 Soluble ligand binding domain IPR003010 Carbon-nitrogen hydrolase IPR036526 Carbon-nitrogen hydrolase superfamily IPR001110 Uncharacterised protein family UPF0012, conserved site IPR004338 Ion-translocating oxidoreductase NqrB/RnfD IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D IPR007329 FMN-binding IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG IPR003667 NqrDE/RnfAE IPR010968 Ion-translocating oxidoreductase complex subunit E IPR011257 DNA glycosylase IPR004036 Endonuclease III-like, conserved site-2 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif IPR004035 Endonuclease III, iron-sulphur binding site IPR003265 HhH-GPD domain IPR000445 Helix-hairpin-helix motif IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal IPR005759 Endonuclease III IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain IPR004361 Glyoxalase I IPR018146 Glyoxalase I, conserved site IPR037523 Vicinal oxygen chelate (VOC) domain IPR020206 Uncharacterised protein family, VP2110 IPR041544 MotY N-terminal domain IPR006665 OmpA-like domain IPR006690 Outer membrane protein, OmpA-like, conserved site IPR036737 OmpA-like domain superfamily IPR013520 Exonuclease, RNase T/DNA polymerase III IPR005987 Ribonuclease T IPR012337 Ribonuclease H-like superfamily IPR036397 Ribonuclease H superfamily IPR036291 NAD(P)-binding domain superfamily IPR002347 Short-chain dehydrogenase/reductase SDR IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal IPR032813 Putative Na+/H+ antiporter, N-terminal IPR002109 Glutaredoxin IPR033658 Glutaredoxin, PICOT-like IPR014434 Monothiol glutaredoxin IPR004480 Monothiol glutaredoxin-related IPR036249 Thioredoxin-like superfamily IPR001189 Manganese/iron superoxide dismutase IPR019833 Manganese/iron superoxide dismutase, binding site IPR019832 Manganese/iron superoxide dismutase, C-terminal IPR019831 Manganese/iron superoxide dismutase, N-terminal IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily IPR034789 Bifunctional aldehyde-alcohol dehydrogenase, C-terminal domain IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA IPR018211 Alcohol dehydrogenase, iron-type, conserved site IPR039697 Iron-type alcohol dehydrogenase-like IPR016161 Aldehyde/histidinol dehydrogenase IPR016163 Aldehyde dehydrogenase, C-terminal IPR016162 Aldehyde dehydrogenase, N-terminal IPR015590 Aldehyde dehydrogenase domain IPR012079 Bifunctional aldehyde-alcohol dehydrogenase IPR002771 Multiple antibiotic resistance (MarC)-related IPR018490 Cyclic nucleotide-binding-like IPR018488 Cyclic nucleotide-binding, conserved site IPR000595 Cyclic nucleotide-binding domain IPR005821 Ion transport domain IPR014710 RmlC-like jelly roll fold IPR028325 Voltage-gated potassium channel IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type IPR012080 Aspartate-semialdehyde dehydrogenase IPR036291 NAD(P)-binding domain superfamily IPR000534 Semialdehyde dehydrogenase, NAD-binding IPR012280 Semialdehyde dehydrogenase, dimerisation domain IPR004770 Na+/H+ antiporter NhaC IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal IPR007358 Nucleoid-associated protein NdpA IPR009857 Uncharacterised protein family UPF0352 IPR023202 YejL-like superfamily IPR017850 Alkaline-phosphatase-like, core domain superfamily IPR000917 Sulfatase, N-terminal IPR012159 Inner membrane protein YejM IPR024588 Inner membrane protein YejM, N-terminal IPR011010 DNA breaking-rejoining enzyme, catalytic core IPR013762 Integrase-like, catalytic domain superfamily IPR002104 Integrase, catalytic domain IPR010998 Integrase/recombinase, N-terminal IPR004107 Integrase, SAM-like, N-terminal IPR001727 Gdt1 family IPR000286 Histone deacetylase family IPR023801 Histone deacetylase domain IPR037138 Histone deacetylase domain superfamily IPR023696 Ureohydrolase domain superfamily IPR036291 NAD(P)-binding domain superfamily IPR002347 Short-chain dehydrogenase/reductase SDR IPR000380 DNA topoisomerase, type IA IPR003601 DNA topoisomerase, type IA, domain 2 IPR023406 DNA topoisomerase, type IA, active site IPR013497 DNA topoisomerase, type IA, central IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 IPR023405 DNA topoisomerase, type IA, core domain IPR003602 DNA topoisomerase, type IA, DNA-binding domain IPR005738 DNA topoisomerase III IPR006171 TOPRIM domain IPR034144 DNA topoisomerase 3-like, TOPRIM domain IPR029479 Nitroreductase IPR000415 Nitroreductase-like IPR026021 Putative NAD(P)H nitroreductase YdjA-like IPR013785 Aldolase-type TIM barrel IPR036188 FAD/NAD(P)-binding domain superfamily IPR023753 FAD/NAD(P)-binding domain IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal IPR029045 ClpP/crotonase-like domain superfamily IPR004634 Peptidase S49, protease IV IPR004635 Peptidase S49, SppA IPR002142 Peptidase S49 IPR033854 Signal peptide peptidase A IPR006033 Type I L-asparaginase family IPR036152 Asparaginase/glutaminase-like superfamily IPR006034 Asparaginase/glutaminase-like IPR020827 Asparaginase/glutaminase, active site 1 IPR027475 Asparaginase/glutaminase, active site 2 IPR040919 Asparaginase/glutaminase, C-terminal IPR027473 L-asparaginase, C-terminal IPR041725 Type I (cytosolic) L-asparaginase IPR027474 L-asparaginase, N-terminal IPR037152 L-asparaginase, N-terminal domain superfamily IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily IPR039901 3-deoxy-D-manno-octulosonic acid transferase IPR009749 Protein of unknown function DUF1315 IPR028427 Peptide methionine sulfoxide reductase IPR002579 Peptide methionine sulphoxide reductase MrsB IPR011057 Mss4-like superfamily IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I IPR036291 NAD(P)-binding domain superfamily IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase IPR025532 Glucose-6-phosphate 1-epimerase IPR011013 Galactose mutarotase-like domain superfamily IPR014718 Glycoside hydrolase-type carbohydrate-binding IPR033479 Double Cache domain 1 IPR003660 HAMP domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR029151 Periplasmic sensor-like domain superfamily IPR025714 Methyltransferase domain IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR002201 Glycosyl transferase, family 9 IPR011910 ADP-heptose--LPS heptosyltransferase 2 IPR001952 Alkaline phosphatase IPR018299 Alkaline phosphatase, active site IPR017850 Alkaline-phosphatase-like, core domain superfamily IPR001952 Alkaline phosphatase IPR018299 Alkaline phosphatase, active site IPR017850 Alkaline-phosphatase-like, core domain superfamily IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain IPR004361 Glyoxalase I IPR018146 Glyoxalase I, conserved site IPR037523 Vicinal oxygen chelate (VOC) domain IPR007138 Antibiotic biosynthesis monooxygenase domain IPR011008 Dimeric alpha-beta barrel IPR010920 LSM domain superfamily IPR006685 Mechanosensitive ion channel MscS IPR011066 Mechanosensitive ion channel MscS, C-terminal IPR006686 Mechanosensitive ion channel MscS, conserved site IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 IPR023408 Mechanosensitive ion channel MscS domain superfamily IPR008910 Conserved TM helix IPR005358 Putative zinc- or iron-chelating domain containing protein IPR008228 Uncharacterised conserved protein UCP006173 IPR007341 Transglycosylase-associated protein IPR005358 Putative zinc- or iron-chelating domain containing protein IPR005130 Serine dehydratase-like, alpha subunit IPR021144 Uncharacterised protein family UPF0597 IPR004960 Bacterial lipid A biosynthesis acyltransferase IPR011921 Lipid A biosynthesis myristoyltransferase IPR006056 RidA family IPR019897 RidA, conserved site IPR035959 RutC-like superfamily IPR006175 YjgF/YER057c/UK114 family IPR023271 Aquaporin-like IPR034294 Aquaporin transporter IPR023743 Aquaporin Z IPR000425 Major intrinsic protein IPR022357 Major intrinsic protein, conserved site IPR000093 DNA recombination protein RecR IPR023627 Recombination protein RecR IPR023628 Recombination protein RecR, C4-type zinc finger IPR015967 Recombination protein RecR, conserved site IPR006171 TOPRIM domain IPR034137 RecR, TOPRIM domain IPR036894 Nucleoid-associated protein YbaB-like domain superfamily IPR004401 Nucleoid-associated protein YbaB/EbfC family IPR003593 AAA+ ATPase domain IPR001270 ClpA/B family IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal IPR022001 DNA polymerase III subunit tau, DnaB-binding domain IV IPR022754 DNA polymerase III, gamma subunit, domain III IPR012763 DNA polymerase III, subunit gamma/ tau IPR021029 DNA polymerase III, tau subunit, domain V IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR038249 DNA polymerase III, tau subunit, C-terminal domain superfamily IPR005764 Adenine phosphoribosyl transferase IPR000836 Phosphoribosyltransferase domain IPR029057 Phosphoribosyltransferase-like IPR007401 Protein of unknown function DUF454 IPR011006 CheY-like superfamily IPR036457 PPM-type phosphatase domain superfamily IPR028616 Regulator of RpoS IPR001789 Signal transduction response regulator, receiver domain IPR039420 Transcriptional regulatory protein WalR-like IPR001509 NAD-dependent epimerase/dehydratase IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase IPR036291 NAD(P)-binding domain superfamily IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR017932 Glutamine amidotransferase type 2 domain IPR029055 Nucleophile aminohydrolases, N-terminal IPR000836 Phosphoribosyltransferase domain IPR029057 Phosphoribosyltransferase-like IPR005854 Amidophosphoribosyltransferase IPR035584 Amidophosphoribosyltransferase, N-terminal IPR003825 Colicin V production, CvpA IPR032898 Cell division protein DedD IPR007730 Sporulation-like domain IPR036680 Sporulation-like domain superfamily IPR001645 Folylpolyglutamate synthetase IPR018109 Folylpolyglutamate synthetase, conserved site IPR036565 Mur-like, catalytic domain superfamily IPR004101 Mur ligase, C-terminal IPR036615 Mur ligase, C-terminal domain superfamily IPR013221 Mur ligase, central IPR034733 Acetyl-CoA carboxylase IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit IPR029045 ClpP/crotonase-like domain superfamily IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal IPR041010 Acetyl-coA carboxylase zinc finger domain IPR020103 Pseudouridine synthase, catalytic domain superfamily IPR001406 Pseudouridine synthase I, TruA IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain IPR020095 Pseudouridine synthase I, TruA, C-terminal IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site IPR012080 Aspartate-semialdehyde dehydrogenase IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type IPR036291 NAD(P)-binding domain superfamily IPR000534 Semialdehyde dehydrogenase, NAD-binding IPR012280 Semialdehyde dehydrogenase, dimerisation domain IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain IPR020921 Erythronate-4-phosphate dehydrogenase IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain IPR036291 NAD(P)-binding domain superfamily IPR038251 PdxB, dimerisation domain superfamily IPR010344 Exopolysaccharide biosynthesis protein YbjH IPR000794 Beta-ketoacyl synthase IPR018201 Beta-ketoacyl synthase, active site IPR014031 Beta-ketoacyl synthase, C-terminal IPR014030 Beta-ketoacyl synthase, N-terminal IPR020841 Polyketide synthase, beta-ketoacyl synthase domain IPR016039 Thiolase-like IPR006076 FAD dependent oxidoreductase IPR036188 FAD/NAD(P)-binding domain superfamily IPR008471 MnmC-like methyltransferase IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal IPR029039 Flavoprotein-like superfamily IPR005025 NADPH-dependent FMN reductase-like IPR014987 Uncharacterised protein family YfcL IPR007411 Elongation factor P hydroxylase IPR005115 Uncharacterised domain UPF0126 IPR000453 Chorismate synthase IPR035904 Chorismate synthase AroC superfamily IPR020541 Chorismate synthase, conserved site IPR002052 DNA methylase, N-6 adenine-specific, conserved site IPR004556 Methyltransferase HemK-like IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR007848 Methyltransferase small domain IPR002625 Smr domain IPR036063 Smr domain superfamily IPR022990 Uncharacterised protein family UPF0115 IPR013078 Histidine phosphatase superfamily, clade-1 IPR029033 Histidine phosphatase superfamily IPR004449 Phosphohistidine phosphatase SixA IPR011249 Metalloenzyme, LuxS/M16 peptidase-like IPR011765 Peptidase M16, N-terminal IPR001431 Peptidase M16, zinc-binding site IPR007863 Peptidase M16, C-terminal IPR032632 Peptidase M16, middle/third domain IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily IPR029045 ClpP/crotonase-like domain superfamily IPR018376 Enoyl-CoA hydratase/isomerase, conserved site IPR001753 Enoyl-CoA hydratase/isomerase IPR012802 Fatty oxidation complex, alpha subunit FadJ IPR036291 NAD(P)-binding domain superfamily IPR012806 Acetyl-CoA C-acyltransferase FadI IPR002155 Thiolase IPR016039 Thiolase-like IPR020617 Thiolase, C-terminal IPR020613 Thiolase, conserved site IPR020616 Thiolase, N-terminal IPR039425 RNA polymerase sigma-70 like IPR014284 RNA polymerase sigma-70 like domain IPR000838 RNA polymerase sigma factor 70, ECF, conserved site IPR007627 RNA polymerase sigma-70 region 2 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 IPR013325 RNA polymerase sigma factor, region 2 IPR013324 RNA polymerase sigma factor, region 3/4-like IPR036388 Winged helix-like DNA-binding domain superfamily IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) IPR042117 OMPP1/FadL/TodX superfamily IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) IPR042117 OMPP1/FadL/TodX superfamily IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) IPR042117 OMPP1/FadL/TodX superfamily IPR007428 MlaA lipoprotein IPR005616 CcmH/CycL/Ccl2/NrfF family IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily IPR017560 Cytochrome c-type biogenesis protein CcmI IPR013026 Tetratricopeptide repeat-containing domain IPR011990 Tetratricopeptide-like helical domain superfamily IPR019734 Tetratricopeptide repeat IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE IPR013740 Redoxin IPR036249 Thioredoxin-like superfamily IPR017937 Thioredoxin, conserved site IPR013766 Thioredoxin domain IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal IPR002541 Cytochrome c assembly protein IPR003567 Cytochrome c-type biogenesis protein IPR003568 Cytochrome c-type biogenesis protein CcmF IPR004329 CcmE/CycJ protein IPR036127 CcmE-like superfamily IPR007078 Haem exporter protein D (CcmD) IPR002541 Cytochrome c assembly protein IPR003557 Cytochrome c-type biogenesis protein CcmC IPR003544 Cytochrome c-type biogenesis protein CcmB IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR005895 ABC transporter, haem export, CcmA IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR039315 Chemotaxis protein CheW IPR036061 CheW-like domain superfamily IPR002545 CheW-like domain IPR025669 AAA domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR008248 Protein-glutamate methylesterase/protein-glutamine glutaminase, CheB type IPR035909 Methylesterase CheB, C-terminal IPR011006 CheY-like superfamily IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase IPR001789 Signal transduction response regulator, receiver domain IPR004105 Histidine kinase CheA-like, homodimeric domain IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily IPR036061 CheW-like domain superfamily IPR002545 CheW-like domain IPR011006 CheY-like superfamily IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR036641 HPT domain superfamily IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain IPR001789 Signal transduction response regulator, receiver domain IPR007439 Chemotaxis phosphatase, CheZ IPR011006 CheY-like superfamily IPR001789 Signal transduction response regulator, receiver domain IPR014284 RNA polymerase sigma-70 like domain IPR000943 RNA polymerase sigma-70 IPR007627 RNA polymerase sigma-70 region 2 IPR007624 RNA polymerase sigma-70 region 3 IPR007630 RNA polymerase sigma-70 region 4 IPR012845 RNA polymerase sigma factor, FliA/WhiG IPR013325 RNA polymerase sigma factor, region 2 IPR013324 RNA polymerase sigma factor, region 3/4-like IPR028617 RNA polymerase sigma factor FliA IPR025501 ATP binding protein MinD IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 IPR003593 AAA+ ATPase domain IPR020006 Flagellar biosynthesis protein FlhF IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain IPR042194 FHIPEP, domain 1 IPR042193 FHIPEP, domain 3 IPR042196 FHIPEP, domain 4 IPR025505 FHIPEP conserved site IPR006301 Flagellar biosynthesis protein FlhA IPR001712 Type III secretion system FHIPEP IPR006136 Flagellar biosynthetic protein FlhB IPR006135 Type III secretion system substrate exporter IPR029025 Type III secretion system substrate exporter, C-terminal IPR006303 Flagellar biosynthesis protein FliR IPR002010 Type III secretion system inner membrane R protein IPR002191 Bacterial export protein family 3 IPR006305 Flagellar biosynthesis protein FliQ IPR002191 Bacterial export protein family 3 IPR006305 Flagellar biosynthesis protein FliQ IPR005837 Flagellar transport protein FliP IPR005838 Type III secretion system inner membrane P protein IPR005837 Flagellar transport protein FliP IPR005838 Type III secretion system inner membrane P protein IPR022781 Flagellar biosynthesis protein, FliO IPR012826 Flagellar motor switch FliN IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb IPR001543 Surface presentation of antigen (SpoA) IPR036429 SpoA-like superfamily IPR012826 Flagellar motor switch FliN IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb IPR001543 Surface presentation of antigen (SpoA) IPR036429 SpoA-like superfamily IPR028976 CheC-like superfamily IPR001689 Flagellar motor switch protein FliM IPR001543 Surface presentation of antigen (SpoA) IPR036429 SpoA-like superfamily IPR003593 AAA+ ATPase domain IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain IPR032463 ATPase, type III secretion system, FliI IPR005714 ATPase, type III secretion system, FliI/YscN IPR020005 Flagellar export ATPase FliI, clade 1 IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR040627 T3SS EscN ATPase, C-terminal IPR003593 AAA+ ATPase domain IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain IPR032463 ATPase, type III secretion system, FliI IPR005714 ATPase, type III secretion system, FliI/YscN IPR020005 Flagellar export ATPase FliI, clade 1 IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR040627 T3SS EscN ATPase, C-terminal IPR000090 Flagellar motor switch protein FliG IPR023087 Flagellar motor switch protein FliG, C-terminal IPR011002 Flagellar motor switch protein FliG, alpha-helical IPR032779 Flagellar motor switch protein FliG, middle domain IPR028263 Flagellar motor switch protein FliG, N-terminal domain IPR013556 Flagellar M-ring C-terminal IPR000067 Flagellar M-ring protein FliF IPR006182 Secretory protein YscJ/FliF IPR013556 Flagellar M-ring C-terminal IPR000067 Flagellar M-ring protein FliF IPR006182 Secretory protein YscJ/FliF IPR001624 Flagellar hook-basal body complex protein FliE IPR003593 AAA+ ATPase domain IPR011006 CheY-like superfamily IPR009057 Homeobox-like domain superfamily IPR002197 DNA binding HTH domain, Fis-type IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR001789 Signal transduction response regulator, receiver domain IPR002078 RNA polymerase sigma factor 54 interaction domain IPR025662 Sigma-54 interaction domain, ATP-binding site 1 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 IPR025944 Sigma-54 interaction domain, conserved site IPR029995 Transcriptional activator SfnR/FlbD IPR003593 AAA+ ATPase domain IPR011006 CheY-like superfamily IPR009057 Homeobox-like domain superfamily IPR002197 DNA binding HTH domain, Fis-type IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR001789 Signal transduction response regulator, receiver domain IPR002078 RNA polymerase sigma factor 54 interaction domain IPR025662 Sigma-54 interaction domain, ATP-binding site 1 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 IPR025944 Sigma-54 interaction domain, conserved site IPR029995 Transcriptional activator SfnR/FlbD IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR000014 PAS domain IPR035965 PAS domain superfamily IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR003593 AAA+ ATPase domain IPR011006 CheY-like superfamily IPR010518 Flagellar regulatory FleQ IPR009057 Homeobox-like domain superfamily IPR002197 DNA binding HTH domain, Fis-type IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR002078 RNA polymerase sigma factor 54 interaction domain IPR025662 Sigma-54 interaction domain, ATP-binding site 1 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 IPR025944 Sigma-54 interaction domain, conserved site IPR003713 Flagellar protein FliS IPR036584 Flagellar protein FliS superfamily IPR003713 Flagellar protein FliS IPR036584 Flagellar protein FliS superfamily IPR010810 Flagellin hook, IN motif IPR040026 Flagellar hook-associated protein 2 IPR010809 Flagellar hook-associated protein 2, C-terminal IPR003481 Flagellar hook-associated protein 2, N-terminal IPR005186 FlaG protein IPR035924 FlaG-like superfamily IPR001492 Flagellin IPR042187 Flagellin, C-terminal domain, subdomain 2 IPR001029 Flagellin, D0/D1 domain IPR010810 Flagellin hook, IN motif IPR001492 Flagellin IPR042187 Flagellin, C-terminal domain, subdomain 2 IPR001029 Flagellin, D0/D1 domain IPR010810 Flagellin hook, IN motif IPR001492 Flagellin IPR042187 Flagellin, C-terminal domain, subdomain 2 IPR001029 Flagellin, D0/D1 domain IPR010810 Flagellin hook, IN motif IPR001492 Flagellin IPR042187 Flagellin, C-terminal domain, subdomain 2 IPR001029 Flagellin, D0/D1 domain IPR010810 Flagellin hook, IN motif IPR011008 Dimeric alpha-beta barrel IPR006314 Dyp-type peroxidase IPR021318 Protein of unknown function DUF2919 IPR005888 dTDP-glucose 4,6-dehydratase IPR016040 NAD(P)-binding domain IPR036291 NAD(P)-binding domain superfamily IPR006660 Arsenate reductase-like IPR036249 Thioredoxin-like superfamily IPR006504 Transcriptional regulator Spx/MgsR IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site IPR036264 Bacterial exopeptidase dimerisation domain IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria IPR002933 Peptidase M20 IPR011650 Peptidase M20, dimerisation domain IPR014524 Outer membrane protein assembly factor BamC IPR042268 Outer membrane protein assembly factor BamC, C-terminal IPR010653 NlpB/DapX lipoprotein IPR013785 Aldolase-type TIM barrel IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA IPR002220 DapA-like IPR020625 Schiff base-forming aldolase, active site IPR020624 Schiff base-forming aldolase, conserved site IPR005907 Glucose-1-phosphate thymidylyltransferase, short form IPR005835 Nucleotidyl transferase domain IPR029044 Nucleotide-diphospho-sugar transferases IPR002912 ACT domain IPR016867 Glycine cleavage system transcriptional repressor IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant IPR036249 Thioredoxin-like superfamily IPR013766 Thioredoxin domain IPR002549 Transmembrane protein TqsA-like IPR001915 Peptidase M48 IPR030873 Beta-barrel assembly-enhancing protease IPR013026 Tetratricopeptide repeat-containing domain IPR011990 Tetratricopeptide-like helical domain superfamily IPR019734 Tetratricopeptide repeat IPR006659 Arsenate reductase IPR006660 Arsenate reductase-like IPR036249 Thioredoxin-like superfamily IPR008254 Flavodoxin/nitric oxide synthase IPR001226 Flavodoxin, conserved site IPR029039 Flavoprotein-like superfamily IPR010089 Flavoprotein WrbA-like IPR005025 NADPH-dependent FMN reductase-like IPR029935 Uracil permease IPR006042 Xanthine/uracil permease IPR006043 Xanthine/uracil/vitamin C permease IPR000836 Phosphoribosyltransferase domain IPR029057 Phosphoribosyltransferase-like IPR034332 Uracil phosphoribosyltransferase, bacterial-type IPR005765 Uracil phosphoribosyl transferase IPR010918 PurM-like, C-terminal domain IPR036676 PurM-like, C-terminal domain superfamily IPR016188 PurM-like, N-terminal domain IPR036921 PurM-like, N-terminal domain superfamily IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase IPR002376 Formyl transferase, N-terminal IPR036477 Formyl transferase, N-terminal domain superfamily IPR004607 Phosphoribosylglycinamide formyltransferase IPR001555 Phosphoribosylglycinamide formyltransferase, active site IPR017932 Glutamine amidotransferase type 2 domain IPR029055 Nucleophile aminohydrolases, N-terminal IPR026869 Putative glutamine amidotransferase type 2 IPR035461 GmhA/DiaA IPR004515 Phosphoheptose isomerase IPR001347 Sugar isomerase (SIS) IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain IPR036250 Acyl-CoA dehydrogenase-like, C-terminal IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type IPR011547 SLC26A/SulP transporter domain IPR001902 SLC26A/SulP transporter IPR002645 STAS domain IPR036513 STAS domain superfamily IPR006054 DNA polymerase III epsilon subunit, exonuclease domain IPR006309 DNA polymerase 3, epsilon subunit IPR013520 Exonuclease, RNase T/DNA polymerase III IPR012337 Ribonuclease H-like superfamily IPR036397 Ribonuclease H superfamily IPR012337 Ribonuclease H-like superfamily IPR002156 Ribonuclease H domain IPR036397 Ribonuclease H superfamily IPR022892 Ribonuclease HI IPR026669 Arsenite methyltransferase-like IPR013216 Methyltransferase type 11 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR035680 Hydroxyacylglutathione hydrolase, MBL domain IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain IPR017782 Hydroxyacylglutathione hydrolase IPR001279 Metallo-beta-lactamase IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like IPR018392 LysM domain IPR036779 LysM domain superfamily IPR023346 Lysozyme-like domain superfamily IPR000189 Prokaryotic transglycosylase, active site IPR008258 Transglycosylase SLT domain 1 IPR036691 Endonuclease/exonuclease/phosphatase superfamily IPR005135 Endonuclease/exonuclease/phosphatase IPR022958 Uncharacterised protein family UPF0294 IPR002187 Nitrogen regulatory protein PII IPR011322 Nitrogen regulatory PII-like, alpha/beta IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal IPR017918 Nitrogen regulatory protein PII, conserved site IPR002332 Nitrogen regulatory protein P-II, urydylation site IPR009056 Cytochrome c-like domain IPR036909 Cytochrome c-like domain superfamily IPR008168 Cytochrome c, class IC IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal IPR012094 tRNA(Ile)-lysidine synthase IPR012795 tRNA(Ile)-lysidine synthase, N-terminal IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain IPR001095 Acetyl-CoA carboxylase, alpha subunit IPR029045 ClpP/crotonase-like domain superfamily IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain IPR041931 Bacterial DNA polymerase III alpha subunit, thumb domain IPR040982 DNA polymerase III alpha subunit finger domain IPR029460 DNA polymerase, helix-hairpin-helix motif IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type IPR004013 PHP domain IPR003141 Polymerase/histidinol phosphatase, N-terminal IPR016195 Polymerase/histidinol phosphatase-like IPR004805 DNA polymerase III, alpha subunit IPR022898 Ribonuclease HII IPR001352 Ribonuclease HII/HIII IPR024567 Ribonuclease HII/HIII domain IPR012337 Ribonuclease H-like superfamily IPR036397 Ribonuclease H superfamily IPR003835 Glycosyl transferase, family 19 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily IPR001451 Hexapeptide repeat IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase IPR011004 Trimeric LpxA-like superfamily IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ IPR029069 HotDog domain superfamily IPR001451 Hexapeptide repeat IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD IPR011004 Trimeric LpxA-like superfamily IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region IPR005632 Chaperone protein Skp IPR024930 Skp domain superfamily IPR000184 Bacterial surface antigen (D15) IPR010827 POTRA domain, BamA/TamA-like IPR039910 Surface antigen D15-like IPR023707 Outer membrane protein assembly factor BamA IPR034746 POTRA domain IPR001478 PDZ domain IPR041489 PDZ domain 6 IPR036034 PDZ superfamily IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase IPR008915 Peptidase M50 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal IPR026877 DXP reductoisomerase C-terminal domain IPR036169 DXP reductoisomerase, C-terminal domain superfamily IPR036291 NAD(P)-binding domain superfamily IPR000374 Phosphatidate cytidylyltransferase IPR001441 Decaprenyl diphosphate synthase-like IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site IPR036424 Decaprenyl diphosphate synthase-like superfamily IPR002661 Ribosome recycling factor IPR023584 Ribosome recycling factor domain IPR036191 RRF superfamily IPR036393 Acetylglutamate kinase-like superfamily IPR001048 Aspartate/glutamate/uridylate kinase IPR011817 Uridylate kinase IPR015963 Uridylate kinase, bacteria IPR036402 Elongation factor Ts, dimerisation domain superfamily IPR001816 Translation elongation factor EFTs/EF1B IPR014039 Translation elongation factor EFTs/EF1B, dimerisation IPR018101 Translation elongation factor Ts, conserved site IPR009060 UBA-like superfamily IPR001865 Ribosomal protein S2 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid IPR018130 Ribosomal protein S2, conserved site IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily IPR036005 Creatinase/aminopeptidase-like IPR000994 Peptidase M24 IPR001714 Peptidase M24, methionine aminopeptidase IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 IPR002912 ACT domain IPR003607 HD/PDEase domain IPR006674 HD domain IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase IPR002934 Polymerase, nucleotidyl transferase domain IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme IPR020911 Uncharacterised protein family UPF0325 IPR020103 Pseudouridine synthase, catalytic domain superfamily IPR006224 Pseudouridine synthase, RluC/RluD, conserved site IPR006145 Pseudouridine synthase, RsuA/RluA IPR007384 Protein of unknown function UCP006257 IPR023376 YqcC-like domain IPR036814 YqcC-like superfamily IPR003791 Protein of unknown function UPF0178 IPR004697 p-Aminobenzoyl-glutamate transport protein AbgT IPR011540 AbgT, Proteobacteria IPR004697 p-Aminobenzoyl-glutamate transport protein AbgT IPR011540 AbgT, Proteobacteria IPR034704 L28p-like IPR002150 Ribosomal protein L31 IPR027493 Ribosomal protein L31 type B IPR042105 Ribosomal protein L31 superfamily IPR023370 TrmO-like, N-terminal domain IPR041369 TrmO, C-terminal IPR023368 Uncharacterised protein family UPF0066, conserved site IPR040372 YaeB-like IPR036413 YaeB-like superfamily IPR036414 YaeB, N-terminal domain superfamily IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) IPR006195 Aminoacyl-tRNA synthetase, class II IPR004154 Anticodon-binding IPR036621 Anticodon-binding domain superfamily IPR002316 Proline-tRNA ligase, class IIa IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 IPR033730 Prokaryote proline-tRNA ligase core domain IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related IPR014710 RmlC-like jelly roll fold IPR011051 RmlC-like cupin domain superfamily IPR009624 Uncharacterised protein family UPF0253 IPR000175 Sodium:neurotransmitter symporter IPR037272 Sodium:neurotransmitter symporter superfamily IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily IPR018151 Transcription elongation factor, GreA/GreB, conserved site IPR006359 Transcription elongation factor GreA IPR028624 Transcription elongation factor GreA/GreB IPR001437 Transcription elongation factor, GreA/GreB, C-terminal IPR023459 Transcription elongation factor GreA/GreB family IPR022691 Transcription elongation factor, GreA/GreB, N-terminal IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily IPR011545 DEAD/DEAH box helicase domain IPR004589 DNA helicase, ATP-dependent, RecQ type IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial IPR014001 Helicase superfamily 1/2, ATP-binding domain IPR001650 Helicase, C-terminal IPR010997 HRDC-like superfamily IPR002121 HRDC domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain IPR018982 RQC domain IPR036388 Winged helix-like DNA-binding domain superfamily IPR036775 DNA polymerase, Y-family, little finger domain superfamily IPR017961 DNA polymerase, Y-family, little finger domain IPR022880 DNA polymerase IV IPR024728 DNA polymerase type-Y, HhH motif IPR001126 UmuC domain IPR022931 Sulfur carrier protein TusA IPR001455 TusA-like domain IPR036868 TusA-like domain superfamily IPR024932 Flavin transferase ApbE IPR003374 ApbE-like superfamily IPR042159 Flavin-trafficking protein ApbE IPR036010 2Fe-2S ferredoxin-like superfamily IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain IPR012675 Beta-grasp domain superfamily IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain IPR017927 FAD-binding domain, ferredoxin reductase-type IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain IPR010205 Na(+)-translocating NADH-quinone reductase subunit F IPR001433 Oxidoreductase FAD/NAD(P)-binding IPR017938 Riboflavin synthase-like beta-barrel IPR003667 NqrDE/RnfAE IPR010967 Na(+)-translocating NADH-quinone reductase subunit E IPR011292 Na(+)-translocating NADH-quinone reductase subunit D IPR003667 NqrDE/RnfAE IPR007329 FMN-binding IPR010204 Na(+)-translocating NADH-quinone reductase subunit C IPR010966 Na(+)-translocating NADH-quinone reductase subunit B IPR004338 Ion-translocating oxidoreductase NqrB/RnfD IPR008703 Na(+)-translocating NADH-quinone reductase subunit A IPR022615 Na(+)-translocating NADH-quinone reductase subunit A, C-terminal domain IPR002634 BolA protein IPR036065 BolA-like superfamily IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR007848 Methyltransferase small domain IPR003362 Bacterial sugar transferase IPR012640 Membrane lipoprotein, lipid attachment site IPR005619 Uncharacterised protein family, YajG IPR029000 Cyclophilin-like domain superfamily IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain IPR004752 AmpG-like permease/Acetyl-coenzyme A transporter 1 IPR011701 Major facilitator superfamily IPR020846 Major facilitator superfamily domain IPR036259 MFS transporter superfamily IPR039425 RNA polymerase sigma-70 like IPR014284 RNA polymerase sigma-70 like domain IPR007627 RNA polymerase sigma-70 region 2 IPR007630 RNA polymerase sigma-70 region 4 IPR013325 RNA polymerase sigma factor, region 2 IPR013324 RNA polymerase sigma factor, region 3/4-like IPR036388 Winged helix-like DNA-binding domain superfamily IPR003055 Nucleoside-specific channel-forming protein Tsx IPR018013 Nucleoside-specific channel-forming protein, Tsx-like IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily IPR013328 6-phosphogluconate dehydrogenase, domain 2 IPR003710 Ketopantoate reductase ApbA/PanE IPR013752 Ketopantoate reductase, C-terminal domain IPR013332 Ketopantoate reductase, N-terminal domain IPR036291 NAD(P)-binding domain superfamily IPR029062 Class I glutamine amidotransferase-like IPR006287 Protein/nucleic acid deglycase DJ-1 IPR002818 DJ-1/PfpI IPR000192 Aminotransferase class V domain IPR022471 Cysteine desulphurase, catalytic subunit, CsdA IPR010970 Cysteine desulfurase, SufS IPR016454 Cysteine desulfurase IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR017763 Cysteine desulfurase, sulphur acceptor subunit CsdE IPR003808 Fe-S metabolism associated domain, SufE-like IPR000594 THIF-type NAD/FAD binding fold IPR035985 Ubiquitin-activating enzyme IPR010611 3D domain IPR026044 Membrane-bound lytic murein transglycosylase A IPR034654 MltA, 3D domain IPR005300 Lytic transglycosylase MltA, domain B IPR036908 RlpA-like domain superfamily IPR036393 Acetylglutamate kinase-like superfamily IPR016181 Acyl-CoA N-acyltransferase IPR001048 Aspartate/glutamate/uridylate kinase IPR000182 GNAT domain IPR033719 N-acetylglutamate synthase, kinase-like domain IPR010167 Amino-acid N-acetyltransferase IPR003593 AAA+ ATPase domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR006344 RecBCD enzyme subunit RecD IPR041851 RecBCD enzyme subunit RecD, N-terminal domain IPR027785 UvrD-like helicase C-terminal domain IPR014017 UvrD-like DNA helicase, C-terminal IPR000212 DNA helicase, UvrD/REP type IPR011604 Exonuclease, phage-type/RecB, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type IPR004586 RecBCD enzyme subunit RecB IPR011335 Restriction endonuclease type II-like IPR014016 UvrD-like helicase, ATP-binding domain IPR034739 UvrD/AddA helicase, N-terminal IPR013986 DExx box DNA helicase domain superfamily IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR006697 RecBCD enzyme subunit RecC IPR041500 RecC, C-terminal IPR011335 Restriction endonuclease type II-like IPR017850 Alkaline-phosphatase-like, core domain superfamily IPR000917 Sulfatase, N-terminal IPR012159 Inner membrane protein YejM IPR024588 Inner membrane protein YejM, N-terminal IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR009813 Uncharacterised protein family YebG IPR038627 YebG-like superfamily IPR019876 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, gammaproteobacteria IPR001451 Hexapeptide repeat IPR032784 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, middle domain IPR038361 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, middle domain superfamily IPR011004 Trimeric LpxA-like superfamily IPR026586 Type 2 tetrahydrodipicolinate N-succinyltransferase family IPR030395 Glycerophosphodiester phosphodiesterase domain IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily IPR030395 Glycerophosphodiester phosphodiesterase domain IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily IPR005267 Glycerol-3-phosphate transporter IPR011701 Major facilitator superfamily IPR020846 Major facilitator superfamily domain IPR036259 MFS transporter superfamily IPR021159 Glycerate/sugar phosphate transporter, conserved site IPR000849 Sugar phosphate transporter IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR023271 Aquaporin-like IPR000425 Major intrinsic protein IPR022357 Major intrinsic protein, conserved site IPR000577 Carbohydrate kinase, FGGY IPR018485 Carbohydrate kinase, FGGY, C-terminal IPR018483 Carbohydrate kinase, FGGY, conserved site IPR018484 Carbohydrate kinase, FGGY, N-terminal IPR005999 Glycerol kinase IPR014036 DeoR C-terminal sensor domain IPR001034 DeoR-type HTH domain IPR037171 NagB/RpiA transferase-like IPR018356 Transcription regulator, HTH DeoR-type, conserved site IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR031656 Alpha-glycerophosphate oxidase, C-terminal IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily IPR006076 FAD dependent oxidoreductase IPR036188 FAD/NAD(P)-binding domain superfamily IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB IPR023714 Zinc transport protein ZntB IPR012340 Nucleic acid-binding, OB-fold IPR002547 tRNA-binding domain IPR000843 LacI-type HTH domain IPR010982 Lambda repressor-like, DNA-binding domain superfamily IPR028082 Periplasmic binding protein-like I IPR039672 Lactose permease-like IPR020846 Major facilitator superfamily domain IPR036259 MFS transporter superfamily IPR001927 Sodium:galactoside symporter IPR018043 Sodium:galactoside symporter, conserved site IPR000843 LacI-type HTH domain IPR010982 Lambda repressor-like, DNA-binding domain superfamily IPR028082 Periplasmic binding protein-like I IPR018052 Aldose 1-epimerase, conserved site IPR013458 Aldose 1-epimerase, bacterial IPR015443 Aldose 1-epimerase IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase IPR011013 Galactose mutarotase-like domain superfamily IPR014718 Glycoside hydrolase-type carbohydrate-binding IPR000705 Galactokinase IPR022963 Galactokinase, bacterial IPR019741 Galactokinase, conserved site IPR019539 Galactokinase galactose-binding domain IPR013750 GHMP kinase, C-terminal domain IPR036554 GHMP kinase, C-terminal domain superfamily IPR006204 GHMP kinase N-terminal domain IPR006203 GHMP kinase, ATP-binding, conserved site IPR006206 Mevalonate/galactokinase IPR020568 Ribosomal protein S5 domain 2-type fold IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup IPR001937 Galactose-1-phosphate uridyl transferase, class I IPR019779 Galactose-1-phosphate uridyl transferase, class I His-active site IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal IPR036265 HIT-like superfamily IPR016040 NAD(P)-binding domain IPR036291 NAD(P)-binding domain superfamily IPR005886 UDP-glucose 4-epimerase IPR000843 LacI-type HTH domain IPR010982 Lambda repressor-like, DNA-binding domain superfamily IPR028082 Periplasmic binding protein-like I IPR004199 Beta galactosidase small chain/ domain 5 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily IPR011013 Galactose mutarotase-like domain superfamily IPR008979 Galactose-binding-like domain superfamily IPR014718 Glycoside hydrolase-type carbohydrate-binding IPR006101 Glycoside hydrolase, family 2 IPR023232 Glycoside hydrolase, family 2, active site IPR023933 Glycoside hydrolase, family 2, beta-galactosidase IPR006103 Glycoside hydrolase family 2, catalytic domain IPR023230 Glycoside hydrolase, family 2, conserved site IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich IPR006104 Glycosyl hydrolases family 2, sugar binding domain IPR017853 Glycoside hydrolase superfamily IPR013783 Immunoglobulin-like fold IPR032312 Beta-galactosidase, domain 4 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily IPR036291 NAD(P)-binding domain superfamily IPR017476 UDP-glucose/GDP-mannose dehydrogenase IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal IPR028357 UDP-glucose 6-dehydrogenase, bacterial type IPR004375 YhcH/YjgK/YiaL family IPR037012 YhcH/YjgK/YiaL superfamily IPR002293 Amino acid/polyamine transporter I IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR022399 Helicase/secretion neighbourhood ATPase IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR001482 Type II/IV secretion system protein IPR022399 Helicase/secretion neighbourhood ATPase IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR001482 Type II/IV secretion system protein IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type IPR005835 Nucleotidyl transferase domain IPR029044 Nucleotide-diphospho-sugar transferases IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type IPR005835 Nucleotidyl transferase domain IPR029044 Nucleotide-diphospho-sugar transferases IPR007055 BON domain IPR001775 GspD/PilQ family IPR032789 Pilus formation protein, N-terminal IPR004846 Type II/III secretion system IPR014004 Transport-associated and nodulation domain, bacteria IPR007055 BON domain IPR001775 GspD/PilQ family IPR032789 Pilus formation protein, N-terminal IPR004846 Type II/III secretion system IPR014004 Transport-associated and nodulation domain, bacteria IPR022712 Beta-Casp domain IPR001279 Metallo-beta-lactamase IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain IPR035451 Ada-like domain superfamily IPR004026 Ada DNA repair, metal-binding IPR009057 Homeobox-like domain superfamily IPR018060 DNA binding HTH domain, AraC-type IPR018062 HTH domain AraC-type, conserved site IPR016220 Methylphosphotriester-DNA alkyltransferase, AdaA IPR020845 AMP-binding, conserved site IPR000873 AMP-dependent synthetase/ligase IPR042099 AMP-dependent synthetase-like superfamily IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR041095 Elongation Factor G, domain II IPR009022 Elongation factor G, domain III IPR035647 EF-G domain III/V-like IPR035649 EFG, domain V IPR000640 Elongation factor EFG, domain V-like IPR004161 Translation elongation factor EFTu-like, domain 2 IPR031157 Tr-type G domain, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR020568 Ribosomal protein S5 domain 2-type fold IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup IPR005225 Small GTP-binding protein domain IPR000795 Transcription factor, GTP-binding domain IPR009000 Translation protein, beta-barrel domain superfamily IPR004540 Translation elongation factor EFG/EF2 IPR005517 Translation elongation factor EFG/EF2, domain IV IPR003593 AAA+ ATPase domain IPR004504 DNA repair protein RadA IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain IPR020568 Ribosomal protein S5 domain 2-type fold IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup IPR041166 LapB, rubredoxin metal binding domain IPR036412 HAD-like superfamily IPR023214 HAD superfamily IPR023190 Phosphoserine phosphatase, domain 2 IPR041449 Phosphoserine phosphatase, N-terminal IPR004402 Purine nucleoside phosphorylase DeoD-type IPR018016 Nucleoside phosphorylase, conserved site IPR000845 Nucleoside phosphorylase domain IPR035994 Nucleoside phosphorylase superfamily IPR013785 Aldolase-type TIM barrel IPR035990 Triosephosphate isomerase superfamily IPR022896 Triosephosphate isomerase, bacterial/eukaryotic IPR000652 Triosephosphate isomerase IPR020861 Triosephosphate isomerase, active site IPR017850 Alkaline-phosphatase-like, core domain superfamily IPR010045 Phosphopentomutase IPR006124 Metalloenzyme IPR024052 Phosphopentomutase DeoB cap domain superfamily IPR000312 Glycosyl transferase, family 3 IPR017459 Glycosyl transferase family 3, N-terminal domain IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase IPR013465 Thymidine phosphorylase IPR013785 Aldolase-type TIM barrel IPR011343 Deoxyribose-phosphate aldolase IPR002915 DeoC/FbaB/ lacD aldolase IPR023649 Deoxyribose-phosphate aldolase type II IPR008276 Concentrative nucleoside transporter IPR018270 Concentrative nucleoside transporter, metazoan/bacterial IPR011657 Concentrative nucleoside transporter C-terminal domain IPR002668 Concentrative nucleoside transporter N-terminal domain IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain IPR008276 Concentrative nucleoside transporter IPR018270 Concentrative nucleoside transporter, metazoan/bacterial IPR011657 Concentrative nucleoside transporter C-terminal domain IPR002668 Concentrative nucleoside transporter N-terminal domain IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain IPR008276 Concentrative nucleoside transporter IPR018270 Concentrative nucleoside transporter, metazoan/bacterial IPR011657 Concentrative nucleoside transporter C-terminal domain IPR002668 Concentrative nucleoside transporter N-terminal domain IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain IPR018228 Deoxyribonuclease, TatD-related, conserved site IPR032466 Metal-dependent hydrolase IPR001130 TatD family IPR035647 EF-G domain III/V-like IPR004161 Translation elongation factor EFTu-like, domain 2 IPR031157 Tr-type G domain, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR004548 Peptide chain release factor 3 IPR032090 Peptide chain release factor 3, C-terminal IPR038467 Peptide chain release factor 3, C-terminal domain superfamily IPR041732 Peptide chain release factor 3, GTP-binding domain IPR005225 Small GTP-binding protein domain IPR000795 Transcription factor, GTP-binding domain IPR009000 Translation protein, beta-barrel domain superfamily IPR016181 Acyl-CoA N-acyltransferase IPR000182 GNAT domain IPR039543 Lipid-binding protein POX18/YhbT/NSL-TP1 IPR003033 SCP2 sterol-binding domain IPR036527 SCP2 sterol-binding domain superfamily IPR016830 Uncharacterised conserved protein UCP025550, lipid carrier protein, YhbT IPR001539 Peptidase U32 IPR036206 Thiamin phosphate synthase superfamily IPR001539 Peptidase U32 IPR002528 Multi antimicrobial extrusion protein IPR023605 Lipoprotein NlpI IPR013026 Tetratricopeptide repeat-containing domain IPR011990 Tetratricopeptide-like helical domain superfamily IPR013105 Tetratricopeptide repeat 2 IPR019734 Tetratricopeptide repeat IPR001247 Exoribonuclease, phosphorolytic domain 1 IPR015847 Exoribonuclease, phosphorolytic domain 2 IPR036345 Exoribonuclease, PH domain 2 superfamily IPR004087 K Homology domain IPR004088 K Homology domain, type 1 IPR036612 K Homology domain, type 1 superfamily IPR012340 Nucleic acid-binding, OB-fold IPR012162 Polyribonucleotide nucleotidyltransferase IPR027408 PNPase/RNase PH domain superfamily IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain IPR020568 Ribosomal protein S5 domain 2-type fold IPR022967 RNA-binding domain, S1 IPR003029 S1 domain IPR000589 Ribosomal protein S15 IPR005290 Ribosomal protein S15, bacterial-type IPR009068 S15/NS1, RNA-binding IPR020103 Pseudouridine synthase, catalytic domain superfamily IPR002501 Pseudouridine synthase II, N-terminal IPR015947 PUA-like superfamily IPR036974 PUA domain superfamily IPR014780 tRNA pseudouridine synthase II, TruB IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal IPR032819 tRNA pseudouridylate synthase B, C-terminal IPR015946 K homology domain-like, alpha/beta IPR000238 Ribosome-binding factor A IPR023799 Ribosome-binding factor A domain superfamily IPR020053 Ribosome-binding factor A, conserved site IPR009061 Putative DNA-binding domain superfamily IPR013575 Initiation factor 2 associated domain, bacterial IPR006847 Translation initiation factor IF-2, N-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR005225 Small GTP-binding protein domain IPR000795 Transcription factor, GTP-binding domain IPR000178 Translation initiation factor aIF-2, bacterial-like IPR015760 Translation initiation factor IF- 2 IPR023115 Translation initiation factor IF- 2, domain 3 IPR036925 Translation initiation factor IF-2, domain 3 superfamily IPR009000 Translation protein, beta-barrel domain superfamily IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical IPR015946 K homology domain-like, alpha/beta IPR025249 KH domain, NusA-like IPR009019 K homology domain superfamily, prokaryotic type IPR012340 Nucleic acid-binding, OB-fold IPR030842 Transcription termination/antitermination protein NusA, bacterial IPR036555 NusA, N-terminal domain superfamily IPR022967 RNA-binding domain, S1 IPR003029 S1 domain IPR013735 Transcription factor NusA, N-terminal IPR010214 Transcription termination factor NusA, C-terminal duplication IPR010213 Transcription termination factor NusA IPR003728 Ribosome maturation factor RimP IPR028998 Ribosome maturation factor RimP, C-terminal IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily IPR028989 Ribosome maturation factor RimP, N-terminal IPR035956 RimP, N-terminal domain superfamily IPR004692 Preprotein translocase SecG subunit IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III IPR005843 Alpha-D-phosphohexomutase, C-terminal IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily IPR016066 Alpha-D-phosphohexomutase, conserved site IPR005841 Alpha-D-phosphohexomutase superfamily IPR006352 Phosphoglucosamine mutase, bacterial type IPR006390 Dihydropteroate synthase IPR011005 Dihydropteroate synthase-like IPR000489 Pterin-binding domain IPR003593 AAA+ ATPase domain IPR041569 AAA ATPase, AAA+ lid domain IPR003959 ATPase, AAA-type, core IPR003960 ATPase, AAA-type, conserved site IPR005936 Peptidase, FtsH IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR011546 Peptidase M41, FtsH extracellular IPR000642 Peptidase M41 IPR037219 Peptidase M41-like IPR015507 Ribosomal RNA large subunit methyltransferase E IPR002877 Ribosomal RNA methyltransferase FtsJ domain IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR001890 RNA-binding, CRM domain IPR017924 RNA-binding protein YhbY IPR035920 YhbY-like superfamily IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily IPR018151 Transcription elongation factor, GreA/GreB, conserved site IPR006359 Transcription elongation factor GreA IPR028624 Transcription elongation factor GreA/GreB IPR001437 Transcription elongation factor, GreA/GreB, C-terminal IPR023459 Transcription elongation factor GreA/GreB family IPR022691 Transcription elongation factor, GreA/GreB, N-terminal IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily IPR033900 Porin domain, Gram-negative type IPR023614 Porin domain superfamily IPR012338 Beta-lactamase/transpeptidase-like IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site IPR002305 Aminoacyl-tRNA synthetase, class Ic IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR002942 RNA-binding S4 domain IPR036986 RNA-binding S4 domain superfamily IPR002307 Tyrosine-tRNA ligase IPR024088 Tyrosine-tRNA ligase, bacterial-type IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 IPR014036 DeoR C-terminal sensor domain IPR001034 DeoR-type HTH domain IPR037171 NagB/RpiA transferase-like IPR018356 Transcription regulator, HTH DeoR-type, conserved site IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains IPR001036 Acriflavin resistance protein IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 IPR000361 FeS cluster biogenesis IPR016092 FeS cluster insertion protein IPR017870 FeS cluster insertion, C-terminal, conserved site IPR023063 FeS cluster insertion protein ErpA IPR035903 HesB-like domain superfamily IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase IPR005814 Aminotransferase class-III IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR002549 Transmembrane protein TqsA-like IPR002549 Transmembrane protein TqsA-like IPR002052 DNA methylase, N-6 adenine-specific, conserved site IPR013675 Methyltransferase small, N-terminal IPR023543 rRNA small subunit methyltransferase C IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR007848 Methyltransferase small domain IPR011006 CheY-like superfamily IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR036641 HPT domain superfamily IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain IPR001789 Signal transduction response regulator, receiver domain IPR001638 Solute-binding protein family 3/N-terminal domain of MltF IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR025966 Oligopeptide transport permease C-like, N-terminal domain IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR002731 ATPase, BadF/BadG/BcrA/BcrD type IPR025705 Beta-hexosaminidase IPR015883 Glycoside hydrolase family 20, catalytic domain IPR017853 Glycoside hydrolase superfamily IPR029018 Beta-hexosaminidase-like, domain 2 IPR015882 Beta-hexosaminidase, bacterial type, N-terminal IPR008928 Six-hairpin glycosidase superfamily IPR012341 Six-hairpin glycosidase-like superfamily IPR009342 Putative carbohydrate binding domain IPR011013 Galactose mutarotase-like domain superfamily IPR033432 Glycosyl hydrolase 36, catalytic domain IPR037828 N,N'-diacetylchitobiose phosphorylase, N-terminal IPR037018 Glycoside hydrolase family 65, N-terminal domain superfamily IPR010383 Glycosyl hydrolase 94 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III IPR005843 Alpha-D-phosphohexomutase, C-terminal IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily IPR016066 Alpha-D-phosphohexomutase, conserved site IPR005841 Alpha-D-phosphohexomutase superfamily IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III IPR005843 Alpha-D-phosphohexomutase, C-terminal IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily IPR016066 Alpha-D-phosphohexomutase, conserved site IPR005841 Alpha-D-phosphohexomutase superfamily IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR015853 ABC transporter, ferric cation import, FbpC IPR008995 Molybdate/tungstate binding, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR013611 Transport-associated OB, type 2 IPR026045 Ferric binding protein IPR006059 Bacterial extracellular solute-binding protein IPR002187 Nitrogen regulatory protein PII IPR011322 Nitrogen regulatory PII-like, alpha/beta IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal IPR017918 Nitrogen regulatory protein PII, conserved site IPR002332 Nitrogen regulatory protein P-II, urydylation site IPR008249 Uncharacterised protein family UPF0231 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel IPR018136 Aconitase family, 4Fe-4S cluster binding site IPR036008 Aconitase, iron-sulfur domain IPR004406 Aconitase B IPR015933 Aconitase B, HEAT-like domain IPR036288 Aconitase B, HEAT-like domain superfamily IPR015929 Aconitase B, swivel IPR015932 Aconitase, domain 2 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase IPR001423 Lysophospholipase patatin, conserved site IPR002641 Patatin-like phospholipase domain IPR012338 Beta-lactamase/transpeptidase-like IPR001264 Glycosyl transferase, family 51 IPR023346 Lysozyme-like domain superfamily IPR011813 Penicillin-binding protein 1B IPR036950 Penicillin binding protein transglycosylase domain IPR001460 Penicillin-binding protein, transpeptidase IPR028166 Bifunctional transglycosylase second domain IPR005224 Sugar fermentation stimulation protein IPR040452 Sugar fermentation stimulation protein, C-terminal IPR041465 SfsA, N-terminal OB domain IPR012784 RNA polymerase-binding transcription factor DksA IPR037187 DksA, N-terminal domain superfamily IPR020460 Zinc finger, DksA/TraR C4-type, bacteria IPR000962 Zinc finger, DksA/TraR C4-type IPR020458 Zinc finger, DksA/TraR C4-type conserved site IPR009252 Cell division protein ZapB IPR022380 Glutamyl-Q tRNA(Asp) synthetase IPR000924 Glutamyl/glutaminyl-tRNA synthetase IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR002646 Poly A polymerase, head domain IPR010206 Poly(A) polymerase I IPR025866 Polymerase A arginine-rich C-terminal domain IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily IPR003700 Ketopantoate hydroxymethyltransferase IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily IPR040442 Pyruvate kinase-like domain superfamily IPR004821 Cytidyltransferase-like domain IPR003721 Pantoate-beta-alanine ligase IPR042176 Pantoate-beta-alanine ligase, C-terminal domain IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR013525 ABC-2 type transporter IPR000412 ABC-2 transporter IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR010203 Regulator of ribonuclease activity A IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria IPR011547 SLC26A/SulP transporter domain IPR001902 SLC26A/SulP transporter IPR002645 STAS domain IPR036513 STAS domain superfamily IPR001765 Carbonic anhydrase IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site IPR036874 Carbonic anhydrase superfamily IPR005904 Hypoxanthine phosphoribosyl transferase IPR000836 Phosphoribosyltransferase domain IPR029057 Phosphoribosyltransferase-like IPR009057 Homeobox-like domain superfamily IPR001647 DNA-binding HTH domain, TetR-type IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily IPR036188 FAD/NAD(P)-binding domain superfamily IPR023753 FAD/NAD(P)-binding domain IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily IPR006258 Dihydrolipoamide dehydrogenase IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex IPR000089 Biotin/lipoyl attachment IPR023213 Chloramphenicol acetyltransferase-like domain superfamily IPR036625 E3-binding domain superfamily IPR004167 Peripheral subunit-binding domain IPR011053 Single hybrid motif IPR035807 Pyruvate dehydrogenase E1 component, N-terminal IPR004660 Pyruvate dehydrogenase E1 component IPR041621 Pyruvate dehydrogenase E1 component, middle domain IPR029061 Thiamin diphosphate-binding fold IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II IPR005474 Transketolase, N-terminal IPR011711 GntR, C-terminal IPR008920 Transcription regulator FadR/GntR, C-terminal IPR000524 Transcription regulator HTH, GntR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily IPR002502 N-acetylmuramoyl-L-alanine amidase domain IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase IPR000537 UbiA prenyltransferase family IPR026046 UbiA prenyltransferase domain containing protein 1 IPR013785 Aldolase-type TIM barrel IPR004393 Nicotinate-nucleotide pyrophosphorylase IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily IPR002638 Quinolinate phosphoribosyl transferase, C-terminal IPR022412 Quinolinate phosphoribosyl transferase, N-terminal IPR012902 Prokaryotic N-terminal methylation site IPR001082 Fimbrial protein pilin IPR013374 ATPase, type IV, pilus assembly, PilB IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR001482 Type II/IV secretion system protein IPR037257 General secretory system II, protein E, N-terminal superfamily IPR007831 General secretory system II, protein E, N-terminal IPR042181 Type II secretion system, protein E, N-terminal IPR003004 GspF/PilC family IPR001992 Type II secretion system conserved site IPR018076 Type II secretion system F domain IPR042094 Type II secretion system F domain superfamily IPR010627 Peptidase A24A, N-terminal IPR014032 Peptidase A24A, prepilin type IV, bacterial IPR000045 Prepilin type IV endopeptidase, peptidase domain IPR001977 Dephospho-CoA kinase IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR009777 Cell division protein ZapD IPR027462 Z ring-associated protein D, C-terminal IPR036268 ZapD domain superfamily IPR005584 DNA gyrase inhibitor YacG IPR013088 Zinc finger, NHR/GATA-type IPR038657 Ribosomal protein L19 superfamily IPR001857 Ribosomal protein L19 IPR018257 Ribosomal protein L19, conserved site IPR008991 Translation protein SH3-like domain superfamily IPR029028 Alpha/beta knot methyltransferases IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal IPR016009 tRNA methyltransferase TRMD/TRM10-type domain IPR003593 AAA+ ATPase domain IPR003959 ATPase, AAA-type, core IPR019489 Clp ATPase, C-terminal IPR004491 Heat shock protein HslU IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR011961 16S rRNA processing protein RimM IPR027275 PRC-barrel domain IPR011033 PRC-barrel-like superfamily IPR002676 RimM, N-terminal IPR036976 RimM, N-terminal domain superfamily IPR009000 Translation protein, beta-barrel domain superfamily IPR000307 Ribosomal protein S16 IPR020592 Ribosomal protein S16, conserved site IPR023803 Ribosomal protein S16 domain superfamily IPR003593 AAA+ ATPase domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily IPR013822 Signal recognition particle SRP54, helical bundle IPR004125 Signal recognition particle, SRP54 subunit, M-domain IPR004780 Signal recognition particle protein IPR022941 Signal recognition particle, SRP54 subunit IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily IPR002541 Cytochrome c assembly protein IPR000644 CBS domain IPR002550 CNNM, transmembrane domain IPR036318 FAD-binding, type PCMH-like superfamily IPR016169 FAD-binding, type PCMH, subdomain 2 IPR005170 Transporter-associated domain IPR037005 S-ribosylhomocysteinase (LuxS) superfamily IPR011249 Metalloenzyme, LuxS/M16 peptidase-like IPR003815 S-ribosylhomocysteinase (LuxS) IPR014746 Glutamine synthetase/guanido kinase, catalytic domain IPR007370 Glutamate--cysteine ligase IPR006334 Glutamate--cysteine ligase, monofunctional IPR011249 Metalloenzyme, LuxS/M16 peptidase-like IPR011765 Peptidase M16, N-terminal IPR001431 Peptidase M16, zinc-binding site IPR007863 Peptidase M16, C-terminal IPR032816 SNARE associated Golgi protein IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR023746 Transcription regulator HTH, YidZ IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR037402 HTH-type transcriptional regulator YidZ, PBP2 domain IPR022281 ATP-dependent protease, HslV subunit IPR029055 Nucleophile aminohydrolases, N-terminal IPR001353 Proteasome, subunit alpha/beta IPR023333 Proteasome B-type subunit IPR013149 Alcohol dehydrogenase, C-terminal IPR013154 Alcohol dehydrogenase, N-terminal IPR002328 Alcohol dehydrogenase, zinc-type, conserved site IPR011032 GroES-like superfamily IPR036291 NAD(P)-binding domain superfamily IPR020843 Polyketide synthase, enoylreductase domain IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit IPR013785 Aldolase-type TIM barrel IPR001882 Biotin-binding site IPR000089 Biotin/lipoyl attachment IPR003379 Carboxylase, conserved domain IPR005776 Oxaloacetate decarboxylase, alpha subunit IPR000891 Pyruvate carboxyltransferase IPR011053 Single hybrid motif IPR005899 Sodium ion-translocating decarboxylase IPR023424 Oxaloacetate decarboxylase gamma chain, probable IPR003751 Translational regulator CsrA IPR036107 Carbon storage regulator superfamily IPR036393 Acetylglutamate kinase-like superfamily IPR002912 ACT domain IPR041740 Aspartokinase catalytic domain IPR001048 Aspartate/glutamate/uridylate kinase IPR005260 Aspartate kinase, monofunctional class IPR001341 Aspartate kinase IPR018042 Aspartate kinase, conserved site IPR027795 CASTOR, ACT domain IPR002318 Alanine-tRNA ligase, class IIc IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily IPR018165 Alanyl-tRNA synthetase, class IIc, core domain IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal IPR023033 Alanine-tRNA ligase, eukaryota/bacteria IPR003156 DHHA1 domain IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily IPR009000 Translation protein, beta-barrel domain superfamily IPR012947 Threonyl/alanyl tRNA synthetase, SAD IPR003783 Regulatory protein RecX IPR036388 Winged helix-like DNA-binding domain superfamily IPR003593 AAA+ ATPase domain IPR013765 DNA recombination and repair protein RecA IPR020584 DNA recombination/repair protein RecA, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain IPR023400 DNA recombination and repair protein RecA, C-terminal IPR020587 DNA recombination and repair protein RecA, monomer-monomer interface IPR036653 CinA-like, C-terminal IPR008136 CinA, C-terminal IPR005748 DNA mismatch repair protein MutS IPR007695 DNA mismatch repair protein MutS-like, N-terminal IPR017261 DNA mismatch repair protein MutS/MSH IPR000432 DNA mismatch repair protein MutS, C-terminal IPR007861 DNA mismatch repair protein MutS, clamp IPR007696 DNA mismatch repair protein MutS, core IPR016151 DNA mismatch repair protein MutS, N-terminal IPR036187 DNA mismatch repair protein MutS, core domain superfamily IPR007860 DNA mismatch repair protein MutS, connector domain IPR036678 MutS, connector domain superfamily IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR000843 LacI-type HTH domain IPR010982 Lambda repressor-like, DNA-binding domain superfamily IPR028082 Periplasmic binding protein-like I IPR014284 RNA polymerase sigma-70 like domain IPR000943 RNA polymerase sigma-70 IPR009042 RNA polymerase sigma-70 region 1.2 IPR007627 RNA polymerase sigma-70 region 2 IPR007624 RNA polymerase sigma-70 region 3 IPR007630 RNA polymerase sigma-70 region 4 IPR013325 RNA polymerase sigma factor, region 2 IPR013324 RNA polymerase sigma factor, region 3/4-like IPR012761 RNA polymerase sigma factor RpoS IPR036388 Winged helix-like DNA-binding domain superfamily IPR011055 Duplicated hybrid motif IPR018392 LysM domain IPR036779 LysM domain superfamily IPR016047 Peptidase M23 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR030048 Survival protein SurE IPR002828 Survival protein SurE-like phosphatase/nucleotidase IPR036523 SurE-like phosphatase/nucleotidase superfamily IPR020103 Pseudouridine synthase, catalytic domain superfamily IPR001656 Pseudouridine synthase, TruD IPR020119 Pseudouridine synthase TruD, conserved site IPR011760 Pseudouridine synthase, TruD, insertion domain IPR042214 Pseudouridine synthase, TruD, catalytic domain IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase IPR034683 Cytidylyltransferase IspD/TarI IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site IPR029044 Nucleotide-diphospho-sugar transferases IPR023081 Cell division protein FtsB IPR007060 Septum formation initiator FtsL/DivIC IPR000941 Enolase IPR036849 Enolase-like, C-terminal domain superfamily IPR029017 Enolase-like, N-terminal IPR020810 Enolase, C-terminal TIM barrel domain IPR020809 Enolase, conserved site IPR020811 Enolase, N-terminal IPR029062 Class I glutamine amidotransferase-like IPR004468 CTP synthase IPR017456 CTP synthase, N-terminal IPR017926 Glutamine amidotransferase IPR033828 CTP synthase GATase domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR011545 DEAD/DEAH box helicase domain IPR014001 Helicase superfamily 1/2, ATP-binding domain IPR001650 Helicase, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR005259 Primosomal protein N' IPR041222 Primosomal protein N', 3' DNA-binding domain IPR042115 Primosomal protein N', 3' DNA-binding domain superfamily IPR041236 Primosomal protein N, C-terminal domain IPR040498 PriA DNA helicase, Cys-rich region (CRR) domain IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core IPR011551 NTP pyrophosphohydrolase MazG IPR002912 ACT domain IPR012675 Beta-grasp domain superfamily IPR003607 HD/PDEase domain IPR004811 RelA/SpoT family IPR007685 RelA/SpoT IPR004095 TGS IPR012676 TGS-like IPR033655 RelA, TGS domain IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD IPR030390 RNA methyltransferase TrmA, active site IPR030391 RNA methyltransferase TrmA, conserved site IPR012340 Nucleic acid-binding, OB-fold IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR002792 TRAM domain IPR010280 (Uracil-5)-methyltransferase family IPR011006 CheY-like superfamily IPR003660 HAMP domain IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR019247 Histidine kinase BarA, N-terminal IPR036641 HPT domain superfamily IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain IPR001789 Signal transduction response regulator, receiver domain IPR008278 4'-phosphopantetheinyl transferase domain IPR037143 4'-phosphopantetheinyl transferase domain superfamily IPR002582 Holo-[acyl carrier protein] synthase IPR004568 Phosphopantetheine-protein transferase domain IPR013785 Aldolase-type TIM barrel IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ IPR036130 Pyridoxine 5'-phosphate synthase IPR037278 ARFGAP/RecO-like zinc finger IPR022572 DNA replication/recombination mediator RecO, N-terminal IPR012340 Nucleic acid-binding, OB-fold IPR003717 Recombination protein O, RecO IPR030388 Era-type guanine nucleotide-binding (G) domain IPR005662 GTP-binding protein Era IPR006073 GTP binding domain IPR015946 K homology domain-like, alpha/beta IPR004044 K Homology domain, type 2 IPR009019 K homology domain superfamily, prokaryotic type IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR005225 Small GTP-binding protein domain IPR014720 Double-stranded RNA-binding domain IPR011907 Ribonuclease III IPR000999 Ribonuclease III domain IPR036389 Ribonuclease III, endonuclease domain superfamily IPR036286 LexA/Signal peptidase-like superfamily IPR000223 Peptidase S26A, signal peptidase I IPR019758 Peptidase S26A, signal peptidase I, conserved site IPR019757 Peptidase S26A, signal peptidase I, lysine active site IPR019756 Peptidase S26A, signal peptidase I, serine active site IPR019533 Peptidase S26 IPR006297 Elongation factor 4 IPR035647 EF-G domain III/V-like IPR000640 Elongation factor EFG, domain V-like IPR004161 Translation elongation factor EFTu-like, domain 2 IPR031157 Tr-type G domain, conserved site IPR038363 LepA, C-terminal domain superfamily IPR013842 GTP-binding protein LepA, C-terminal IPR035654 Elongation factor 4, domain IV IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR005225 Small GTP-binding protein domain IPR000795 Transcription factor, GTP-binding domain IPR009000 Translation protein, beta-barrel domain superfamily IPR026268 Protein RseC IPR007359 Positive regulator of sigma(E), RseC/MucC IPR033436 MucB/RseB, C-terminal IPR038484 MucB/RseB, C-terminal domain superfamily IPR033434 MucB/RseB, N-terminal IPR005588 MucB/RseB IPR005573 Anti sigma-E protein RseA, C-terminal IPR005572 Anti sigma-E protein RseA, N-terminal IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily IPR026279 Sigma-E factor negative regulatory protein RseA IPR039425 RNA polymerase sigma-70 like IPR014284 RNA polymerase sigma-70 like domain IPR000838 RNA polymerase sigma factor 70, ECF, conserved site IPR007627 RNA polymerase sigma-70 region 2 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 IPR014286 RNA polymerase sigma-70 RpoE type IPR013325 RNA polymerase sigma factor, region 2 IPR013324 RNA polymerase sigma factor, region 3/4-like IPR036388 Winged helix-like DNA-binding domain superfamily IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain IPR036188 FAD/NAD(P)-binding domain superfamily IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal IPR005288 L-aspartate oxidase IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily IPR005631 Flavinator of succinate dehydrogenase IPR036714 Flavinator of succinate dehydrogenase superfamily IPR034704 L28p-like IPR002150 Ribosomal protein L31 IPR027491 Ribosomal protein L31 type A IPR042105 Ribosomal protein L31 superfamily IPR006222 Aminomethyltransferase, folate-binding domain IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal IPR023758 tRNA-modifying protein YgfZ IPR017703 YgfZ/GcvT conserved site IPR002938 FAD-binding domain IPR036188 FAD/NAD(P)-binding domain superfamily IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 IPR002938 FAD-binding domain IPR036188 FAD/NAD(P)-binding domain superfamily IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 IPR011978 Uncharacterised protein family UPF0149 IPR036255 YgfB-like superfamily IPR007838 Cell division protein ZapA-like IPR036192 Cell division protein ZapA-like superfamily IPR023771 Cell division protein ZapA, eubacteria IPR002698 5-formyltetrahydrofolate cyclo-ligase IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily IPR037171 NagB/RpiA transferase-like IPR037171 NagB/RpiA transferase-like IPR020672 Ribose-5-phosphate isomerase, type A, subgroup IPR004788 Ribose 5-phosphate isomerase, type A IPR001848 Ribosomal protein S10 IPR018268 Ribosomal protein S10, conserved site IPR027486 Ribosomal protein S10 domain IPR036838 Ribosomal protein S10 domain superfamily IPR002912 ACT domain IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain IPR036291 NAD(P)-binding domain superfamily IPR007497 Protein of unknown function DUF541 IPR017685 HTH-type transcriptional regulator ArgP IPR023490 HTH-type transcriptional regulator ArgP, Gammaproteobacteria IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR023445 Arginine exporter protein ArgO, enterobacteria IPR001123 Amino acid exporter protein, LeuE-type IPR004777 L-lysine exporter/arginine exporter IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain IPR010920 LSM domain superfamily IPR006685 Mechanosensitive ion channel MscS IPR011066 Mechanosensitive ion channel MscS, C-terminal IPR006686 Mechanosensitive ion channel MscS, conserved site IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 IPR023408 Mechanosensitive ion channel MscS domain superfamily IPR008910 Conserved TM helix IPR013785 Aldolase-type TIM barrel IPR000771 Fructose-bisphosphate aldolase, class-II IPR006411 Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype IPR001576 Phosphoglycerate kinase IPR015911 Phosphoglycerate kinase, conserved site IPR015824 Phosphoglycerate kinase, N-terminal IPR036043 Phosphoglycerate kinase superfamily IPR006422 D-erythrose-4-phosphate dehydrogenase IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain IPR036291 NAD(P)-binding domain superfamily IPR039426 Vitamin B12 transporter BtuB-like IPR012910 TonB-dependent receptor, plug domain IPR037066 TonB-dependent receptor, plug domain superfamily IPR000531 TonB-dependent receptor-like, beta-barrel IPR010916 TonB box, conserved site IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily IPR010917 TonB-dependent receptor, conserved site IPR000597 Ribosomal protein L3 IPR019927 Ribosomal protein L3, bacterial/organelle-type IPR019926 Ribosomal protein L3, conserved site IPR009000 Translation protein, beta-barrel domain superfamily IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR029061 Thiamin diphosphate-binding fold IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II IPR005475 Transketolase-like, pyrimidine-binding domain IPR005478 Transketolase, bacterial-like IPR020826 Transketolase binding site IPR033248 Transketolase, C-terminal domain IPR033247 Transketolase family IPR005474 Transketolase, N-terminal IPR022631 S-adenosylmethionine synthetase, conserved site IPR022630 S-adenosylmethionine synthetase, C-terminal IPR022629 S-adenosylmethionine synthetase, central domain IPR022628 S-adenosylmethionine synthetase, N-terminal IPR002133 S-adenosylmethionine synthetase IPR022636 S-adenosylmethionine synthetase superfamily IPR006640 SprT-like IPR035240 SprT-like, zinc ribbon domain IPR023483 Uncharacterised protein family SprT IPR007346 Endonuclease I IPR029028 Alpha/beta knot methyltransferases IPR015947 PUA-like superfamily IPR006700 Ribosomal RNA small subunit methyltransferase E IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal IPR011761 ATP-grasp fold IPR013815 ATP-grasp fold, subdomain 1 IPR006284 Glutathione synthetase, prokaryotic IPR004218 Prokaryotic glutathione synthetase, ATP-binding IPR004215 Prokaryotic glutathione synthetase, N-terminal IPR016185 Pre-ATP-grasp domain superfamily IPR003774 Protein of unknown function UPF0301 IPR002136 Ribosomal protein L4/L1e IPR023574 Ribosomal protein L4 domain superfamily IPR013005 50S ribosomal protein uL4 IPR012337 Ribonuclease H-like superfamily IPR005227 Putative pre-16S rRNA nuclease IPR006641 YqgF/RNase H-like domain IPR037027 YqgF/RNase H-like domain superfamily IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR006321 Pilus retraction protein PilT IPR001482 Type II/IV secretion system protein IPR003593 AAA+ ATPase domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR006321 Pilus retraction protein PilT IPR001482 Type II/IV secretion system protein IPR001608 Alanine racemase, N-terminal IPR029066 PLP-binding barrel IPR011078 Pyridoxal phosphate homeostasis protein IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily IPR036291 NAD(P)-binding domain superfamily IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain IPR000304 Pyrroline-5-carboxylate reductase IPR003425 CCB3/YggT IPR005228 Conserved hypothetical protein CHP00251 IPR003746 Protein of unknown function DUF167 IPR036591 YggU-like superfamily IPR020922 dITP/XTP pyrophosphatase IPR002637 Ham1-like protein IPR029001 Inosine triphosphate pyrophosphatase-like IPR034505 Anaerobic coproporphyrinogen-III oxidase IPR006638 Elp3/MiaB/NifB IPR010723 HemN, C-terminal IPR004559 Heme chaperone HemW-like IPR007197 Radical SAM IPR023404 Radical SAM, alpha/beta horseshoe IPR012677 Nucleotide-binding alpha-beta plait domain superfamily IPR012678 Ribosomal protein L23/L15e core domain superfamily IPR001014 Ribosomal protein L23/L25, conserved site IPR013025 Ribosomal protein L25/L23 IPR012338 Beta-lactamase/transpeptidase-like IPR015868 Glutaminase IPR017985 DNA methylase, N-4 cytosine-specific, conserved site IPR012327 D12 class N6 adenine-specific DNA methyltransferase IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type IPR005760 A/G-specific adenine glycosylase MutY IPR011257 DNA glycosylase IPR004036 Endonuclease III-like, conserved site-2 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif IPR004035 Endonuclease III, iron-sulphur binding site IPR003265 HhH-GPD domain IPR000445 Helix-hairpin-helix motif IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal IPR029119 MutY, C-terminal IPR015797 NUDIX hydrolase-like domain superfamily IPR007457 Fe(II) trafficking protein YggX IPR036766 Fe(II) trafficking protein YggX superfamily IPR023346 Lysozyme-like domain superfamily IPR023664 Murein transglycosylase-C IPR024570 Murein transglycosylase-C, N-terminal IPR000189 Prokaryotic transglycosylase, active site IPR008258 Transglycosylase SLT domain 1 IPR014188 Acrylyl-CoA reductase AcuI IPR013149 Alcohol dehydrogenase, C-terminal IPR013154 Alcohol dehydrogenase, N-terminal IPR011032 GroES-like superfamily IPR036291 NAD(P)-binding domain superfamily IPR020843 Polyketide synthase, enoylreductase domain IPR012340 Nucleic acid-binding, OB-fold IPR022666 Ribosomal Proteins L2, RNA binding domain IPR014722 Ribosomal protein L2, domain 2 IPR002171 Ribosomal protein L2 IPR005880 Ribosomal protein L2, bacterial/organellar-type IPR022669 Ribosomal protein L2, C-terminal IPR022671 Ribosomal protein L2, conserved site IPR014726 Ribosomal protein L2, domain 3 IPR008991 Translation protein SH3-like domain superfamily IPR016161 Aldehyde/histidinol dehydrogenase IPR016163 Aldehyde dehydrogenase, C-terminal IPR016160 Aldehyde dehydrogenase, cysteine active site IPR029510 Aldehyde dehydrogenase, glutamic acid active site IPR016162 Aldehyde dehydrogenase, N-terminal IPR015590 Aldehyde dehydrogenase domain IPR010102 Succinate semialdehyde dehydrogenase IPR002222 Ribosomal protein S19/S15 IPR005732 Ribosomal protein S19, bacterial-type IPR020934 Ribosomal protein S19 conserved site IPR023575 Ribosomal protein S19, superfamily IPR011006 CheY-like superfamily IPR003607 HD/PDEase domain IPR037522 HD-GYP domain IPR001789 Signal transduction response regulator, receiver domain IPR000843 LacI-type HTH domain IPR010982 Lambda repressor-like, DNA-binding domain superfamily IPR001761 Periplasmic binding protein/LacI sugar binding domain IPR028082 Periplasmic binding protein-like I IPR023588 Transcription regulator HTH, PurR IPR001063 Ribosomal protein L22/L17 IPR018260 Ribosomal protein L22/L17, conserved site IPR036394 Ribosomal protein L22/L17 superfamily IPR005727 Ribosomal protein L22, bacterial/chloroplast-type IPR022948 Chitooligosaccharide deacetylase ChbG-like, bacteria IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel IPR006879 Carbohydrate deacetylase YdjC-like IPR019802 Glycoside hydrolase, family 4, conserved site IPR001088 Glycoside hydrolase, family 4 IPR022616 Glycosyl hydrolase, family 4, C-terminal IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal IPR036291 NAD(P)-binding domain superfamily IPR019802 Glycoside hydrolase, family 4, conserved site IPR001088 Glycoside hydrolase, family 4 IPR022616 Glycosyl hydrolase, family 4, C-terminal IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal IPR036291 NAD(P)-binding domain superfamily IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit IPR036542 Phosphotransferase system, lactose/cellobiose-type IIA subunit superfamily IPR003352 Phosphotransferase system, EIIC IPR004501 Phosphotransferase system, EIIC component, type 3 IPR004796 Phosphotransferase system, cellobiose-type IIC component IPR036095 PTS system IIB component-like superfamily IPR003501 Phosphotransferase system, EIIB component, type 2/3 IPR013012 Phosphotransferase system, EIIB component, type 3 IPR003610 Carbohydrate-binding module family 5/12 IPR036573 Carbohydrate-binding module superfamily 5/12 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel IPR002509 NodB homology domain IPR036291 NAD(P)-binding domain superfamily IPR020904 Short-chain dehydrogenase/reductase, conserved site IPR002347 Short-chain dehydrogenase/reductase SDR IPR018723 Protein of unknown function DUF2254, membrane IPR004087 K Homology domain IPR015946 K homology domain-like, alpha/beta IPR004044 K Homology domain, type 2 IPR009019 K homology domain superfamily, prokaryotic type IPR005704 Ribosomal protein S3, bacterial-type IPR001351 Ribosomal protein S3, C-terminal IPR036419 Ribosomal protein S3, C-terminal domain superfamily IPR018280 Ribosomal protein S3, conserved site IPR030923 LPS export ABC transporter permease LptG IPR005495 Permease LptG/LptF-related IPR030922 LPS export ABC transporter permease LptF IPR005495 Permease LptG/LptF-related IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal IPR023042 Peptidase M17, leucine aminopeptidase IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal IPR007459 DNA polymerase III chi subunit, HolC IPR036768 DNA polymerase III subunit chi superfamily IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site IPR002300 Aminoacyl-tRNA synthetase, class Ia IPR033705 Valyl tRNA synthetase, anticodon-binding domain IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily IPR019499 Valyl-tRNA synthetase, tRNA-binding arm IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain IPR002303 Valine-tRNA ligase IPR016181 Acyl-CoA N-acyltransferase IPR000182 GNAT domain IPR016716 Regulator of ribonuclease activity B IPR036701 RraB-like superfamily IPR009671 Regulator of ribonuclease activity B domain IPR016180 Ribosomal protein L10e/L16 IPR036920 Ribosomal protein L10e/L16 superfamily IPR000114 Ribosomal protein L16 IPR020798 Ribosomal protein L16, conserved site IPR003876 Arginine deiminase IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding IPR006130 Aspartate/ornithine carbamoyltransferase IPR036901 Aspartate/ornithine carbamoyltransferase superfamily IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain IPR002292 Ornithine/putrescine carbamoyltransferase IPR024904 Ornithine carbamoyltransferase IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding IPR006130 Aspartate/ornithine carbamoyltransferase IPR036901 Aspartate/ornithine carbamoyltransferase superfamily IPR002082 Aspartate carbamoyltransferase IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal IPR002801 Aspartate transcarbamylase regulatory subunit IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal IPR036792 Aspartate carbamoyltransferase regulatory subunit, C-terminal domain superfamily IPR036793 Aspartate carbamoyltransferase regulatory subunit, N-terminal domain superfamily IPR006056 RidA family IPR019897 RidA, conserved site IPR035959 RutC-like superfamily IPR006175 YjgF/YER057c/UK114 family IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase IPR002123 Phospholipid/glycerol acyltransferase IPR001986 Enolpyruvate transferase domain IPR036968 Enolpyruvate transferase domain superfamily IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase IPR002634 BolA protein IPR036065 BolA-like superfamily IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC IPR042245 Tgt2/MlaC superfamily IPR001854 Ribosomal protein L29/L35 IPR036049 Ribosomal protein L29/L35 superfamily IPR018254 Ribosomal protein L29, conserved site IPR030970 Probable phospholipid ABC transporter-binding protein MlaD IPR003399 Mce/MlaD IPR003453 ABC transport permease subunit MlaE, Proteobacteria IPR030802 ABC transporter permease MalE IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR030296 Probable ABC transporter ATP-binding protein MlaF/Mkl IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR004481 Sodium/potassium/calcium exchanger IPR004837 Sodium/calcium exchanger membrane region IPR000644 CBS domain IPR004800 Phosphosugar isomerase, KdsD/KpsF-type IPR001347 Sugar isomerase (SIS) IPR035474 KpsF-like, SIS domain IPR014340 Lipopolysaccharide export system protein LptA IPR005653 Organic solvent tolerance-like, N-terminal IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal IPR030921 LPS export ABC transporter, ATP-binding protein LptB IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR000394 RNA polymerase sigma factor 54 IPR007046 RNA polymerase sigma factor 54, core-binding domain IPR007634 RNA polymerase sigma factor 54, DNA-binding IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily IPR036567 Ribosome hibernation promotion factor-like IPR003489 Ribosome hibernation promoting factor/RaiA IPR012340 Nucleic acid-binding, OB-fold IPR019984 30S ribosomal protein S17 IPR000266 Ribosomal protein S17/S11 IPR019979 Ribosomal protein S17, conserved site IPR016152 Phosphotransferase/anion transporter IPR002178 PTS EIIA type-2 domain IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR005337 RapZ-like family IPR000032 Phosphocarrier protein HPr-like IPR035895 HPr-like superfamily IPR001020 Phosphotransferase system, HPr histidine phosphorylation site IPR002114 Phosphotransferase system, HPr serine phosphorylation site IPR000644 CBS domain IPR006668 Magnesium transporter, MgtE intracellular domain IPR038076 MgtE, N-terminal domain superfamily IPR038048 Magnesium transporter MgtE, transmembrane domain IPR006669 Magnesium transporter MgtE IPR006667 SLC41 divalent cation transporters, integral membrane domain IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily IPR000644 CBS domain IPR006668 Magnesium transporter, MgtE intracellular domain IPR038076 MgtE, N-terminal domain superfamily IPR038048 Magnesium transporter MgtE, transmembrane domain IPR006669 Magnesium transporter MgtE IPR006667 SLC41 divalent cation transporters, integral membrane domain IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily IPR002510 Metalloprotease TldD/PmbA IPR035068 Metalloprotease TldD/PmbA, N-terminal IPR036059 Metalloprotease TldD/PmbA superfamily IPR023153 PSPTO4464-like domain superfamily IPR006839 Ribosome-associated, YjgA IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain IPR036291 NAD(P)-binding domain superfamily IPR020103 Pseudouridine synthase, catalytic domain superfamily IPR006225 Pseudouridine synthase, RluC/RluD IPR006224 Pseudouridine synthase, RluC/RluD, conserved site IPR006145 Pseudouridine synthase, RsuA/RluA IPR036853 Ribosomal protein L14 superfamily IPR000218 Ribosomal protein L14P IPR005745 Ribosomal protein L14P, bacterial-type IPR019972 Ribosomal protein L14P, conserved site IPR014001 Helicase superfamily 1/2, ATP-binding domain IPR001650 Helicase, C-terminal IPR023949 RNA polymerase-associated protein RapA IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR022737 RNA polymerase recycling, bacterial, C-terminal IPR038718 SNF2-like, N-terminal domain superfamily IPR000330 SNF2-related, N-terminal domain IPR040765 RapA, N-terminal Tudor like domain 1 IPR040766 RapA, N-terminal Tudor-like domain 2 IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR003714 PhoH-like protein IPR029060 PIN-like domain superfamily IPR002716 PIN domain IPR025502 TldD IPR002510 Metalloprotease TldD/PmbA IPR035068 Metalloprotease TldD/PmbA, N-terminal IPR036059 Metalloprotease TldD/PmbA superfamily IPR003010 Carbon-nitrogen hydrolase IPR036526 Carbon-nitrogen hydrolase superfamily IPR001110 Uncharacterised protein family UPF0012, conserved site IPR032712 AsmA-like, C-terminal IPR011836 Conserved hypothetical protein CHP02099 IPR025263 Domain of unknown function DUF3971 IPR012340 Nucleic acid-binding, OB-fold IPR019307 RNA-binding protein AU-1/Ribonuclease E/G IPR004659 Ribonuclease E/G IPR022967 RNA-binding domain, S1 IPR003029 S1 domain IPR029001 Inosine triphosphate pyrophosphatase-like IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein IPR007227 Cell shape-determining protein MreD IPR026034 Cell shape-determining protein MreD, proteobacterial type IPR042177 Cell/Rod shape-determining protein MreC, domain 1 IPR042175 Cell/Rod shape-determining protein MreC, domain 2 IPR007221 Rod shape-determining protein MreC IPR004753 Cell shape determining protein MreB IPR005824 KOW IPR041988 Ribosomal Protein L26/L24, KOW domain IPR014722 Ribosomal protein L2, domain 2 IPR003256 Ribosomal protein L24 IPR005825 Ribosomal protein L24/L26, conserved site IPR008991 Translation protein SH3-like domain superfamily IPR012902 Prokaryotic N-terminal methylation site IPR012902 Prokaryotic N-terminal methylation site IPR003004 GspF/PilC family IPR018076 Type II secretion system F domain IPR042094 Type II secretion system F domain superfamily IPR003593 AAA+ ATPase domain IPR013374 ATPase, type IV, pilus assembly, PilB IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR001482 Type II/IV secretion system protein IPR037257 General secretory system II, protein E, N-terminal superfamily IPR007831 General secretory system II, protein E, N-terminal IPR042181 Type II secretion system, protein E, N-terminal IPR002132 Ribosomal protein L5 IPR020930 Ribosomal protein L5, bacterial-type IPR031309 Ribosomal protein L5, C-terminal IPR020929 Ribosomal protein L5, conserved site IPR022803 Ribosomal protein L5 domain superfamily IPR031310 Ribosomal protein L5, N-terminal IPR003593 AAA+ ATPase domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR002477 Peptidoglycan binding-like IPR036365 PGBD-like superfamily IPR036366 PGBD superfamily IPR003593 AAA+ ATPase domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR002477 Peptidoglycan binding-like IPR036365 PGBD-like superfamily IPR036366 PGBD superfamily IPR021731 AMIN domain IPR001775 GspD/PilQ family IPR005644 NolW-like IPR038591 NolW-like superfamily IPR013355 Type IV pilus secretin PilQ IPR011662 Secretin/TonB, short N-terminal domain IPR004846 Type II/III secretion system IPR004845 Type II secretion system GspD, conserved site IPR021731 AMIN domain IPR001775 GspD/PilQ family IPR005644 NolW-like IPR038591 NolW-like superfamily IPR013355 Type IV pilus secretin PilQ IPR011662 Secretin/TonB, short N-terminal domain IPR004846 Type II/III secretion system IPR004845 Type II secretion system GspD, conserved site IPR001633 EAL domain IPR035919 EAL domain superfamily IPR033423 Gammaproteobacterial periplasmic sensor domain GAPES4 IPR000160 GGDEF domain IPR029787 Nucleotide cyclase IPR012340 Nucleic acid-binding, OB-fold IPR000424 Primosome PriB/single-strand DNA-binding IPR011344 Single-stranded DNA-binding protein IPR016032 Signal transduction response regulator, C-terminal effector IPR000792 Transcription regulator LuxR, C-terminal IPR036388 Winged helix-like DNA-binding domain superfamily IPR016032 Signal transduction response regulator, C-terminal effector IPR000792 Transcription regulator LuxR, C-terminal IPR036388 Winged helix-like DNA-binding domain superfamily IPR016032 Signal transduction response regulator, C-terminal effector IPR000792 Transcription regulator LuxR, C-terminal IPR036388 Winged helix-like DNA-binding domain superfamily IPR012805 Acetyl-CoA C-acyltransferase FadA IPR002155 Thiolase IPR016039 Thiolase-like IPR020615 Thiolase, acyl-enzyme intermediate active site IPR020610 Thiolase, active site IPR020617 Thiolase, C-terminal IPR020613 Thiolase, conserved site IPR020616 Thiolase, N-terminal IPR001209 Ribosomal protein S14 IPR023036 Ribosomal protein S14, bacterial/plastid IPR018271 Ribosomal protein S14, conserved site IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR004602 UvrABC system subunit A IPR041552 UvrA DNA-binding domain IPR041102 UvrA, interaction domain IPR000192 Aminotransferase class V domain IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase IPR036393 Acetylglutamate kinase-like superfamily IPR002912 ACT domain IPR041745 Lysine-sensitive aspartokinase 3, N-terminal catalytic domain IPR001048 Aspartate/glutamate/uridylate kinase IPR005260 Aspartate kinase, monofunctional class IPR001341 Aspartate kinase IPR018042 Aspartate kinase, conserved site IPR003759 Cobalamin (vitamin B12)-binding module, cap domain IPR006158 Cobalamin (vitamin B12)-binding domain IPR036724 Cobalamin-binding domain superfamily IPR011005 Dihydropteroate synthase-like IPR003726 Homocysteine-binding domain IPR036589 Homocysteine-binding domain superfamily IPR033706 Methionine synthase, B12-binding domain IPR011822 Cobalamin-dependent methionine synthase IPR036594 Methionine synthase domain IPR000489 Pterin-binding domain IPR004223 Vitamin B12-dependent methionine synthase, activation domain IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily IPR006153 Cation/H+ exchanger IPR018422 Cation/H+ exchanger, CPA1 family IPR038770 Sodium/solute symporter superfamily IPR000630 Ribosomal protein S8 IPR035987 Ribosomal protein S8 superfamily IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase IPR002500 Phosphoadenosine phosphosulphate reductase IPR011800 Phosphoadenosine phosphosulphate reductase CysH IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily IPR006067 Nitrite/sulphite reductase 4Fe-4S domain IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding IPR029758 Sulphite reductase [NADPH] flavoprotein, alpha chain, Proteobacteria IPR017927 FAD-binding domain, ferredoxin reductase-type IPR001094 Flavodoxin-like IPR008254 Flavodoxin/nitric oxide synthase IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase IPR029039 Flavoprotein-like superfamily IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily IPR001433 Oxidoreductase FAD/NAD(P)-binding IPR017938 Riboflavin synthase-like beta-barrel IPR000702 Ribosomal protein L6 IPR020040 Ribosomal protein L6, alpha-beta domain IPR036789 Ribosomal protein L6, alpha-beta domain superfamily IPR019906 Ribosomal protein L6, bacterial-type IPR002358 Ribosomal protein L6, conserved site IPR013785 Aldolase-type TIM barrel IPR035587 DUS-like, FMN-binding domain IPR004653 tRNA-dihydrouridine(20/20a) synthase IPR001269 tRNA-dihydrouridine synthase IPR018517 tRNA-dihydrouridine synthase, conserved site IPR002481 Ferric-uptake regulator IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR001672 Phosphoglucose isomerase (PGI) IPR023096 Phosphoglucose isomerase, C-terminal IPR018189 Phosphoglucose isomerase, conserved site IPR035476 Phosphoglucose isomerase, SIS domain 1 IPR035482 Phosphoglucose isomerase, SIS domain 2 IPR001602 Uncharacterised protein family UPF0047 IPR035917 YjbQ-like superfamily IPR000821 Alanine racemase IPR009006 Alanine racemase/group IV decarboxylase, C-terminal IPR011079 Alanine racemase, C-terminal IPR001608 Alanine racemase, N-terminal IPR020622 Alanine racemase, pyridoxal-phosphate attachment site IPR029066 PLP-binding barrel IPR003593 AAA+ ATPase domain IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily IPR007692 DNA helicase, DnaB type IPR007694 DNA helicase, DnaB-like, C-terminal IPR007693 DNA helicase, DnaB-like, N-terminal IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR005484 Ribosomal protein L18 IPR004389 Ribosomal protein L18, bacterial-type IPR000244 Ribosomal protein L9 IPR009027 Ribosomal protein L9/RNase H1, N-terminal IPR020594 Ribosomal protein L9, bacteria/chloroplast IPR020069 Ribosomal protein L9, C-terminal IPR036791 Ribosomal protein L9, C-terminal domain superfamily IPR020070 Ribosomal protein L9, N-terminal IPR036935 Ribosomal protein L9, N-terminal domain superfamily IPR001648 Ribosomal protein S18 IPR018275 Ribosomal protein S18, conserved site IPR036870 Ribosomal protein S18 superfamily IPR012340 Nucleic acid-binding, OB-fold IPR000424 Primosome PriB/single-strand DNA-binding IPR023646 Primosomal replication protein PriB IPR000529 Ribosomal protein S6 IPR020815 Ribosomal protein S6, conserved site IPR020814 Ribosomal protein S6, plastid/chloroplast IPR035980 Ribosomal protein S6 superfamily IPR014717 Translation elongation factor EF1B/ribosomal protein S6 IPR013785 Aldolase-type TIM barrel IPR026019 Ribulose-phosphate 3-epimerase IPR000056 Ribulose-phosphate 3-epimerase-like IPR011060 Ribulose-phosphate binding barrel IPR023095 Adenine-specific methyltransferase, domain 2 IPR002052 DNA methylase, N-6 adenine-specific, conserved site IPR012263 Adenine modification methylase, M.EcoRV-type IPR012327 D12 class N6 adenine-specific DNA methyltransferase IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR016037 3-dehydroquinate synthase AroB IPR030963 3-dehydroquinate synthase family IPR030960 3-dehydroquinate synthase domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR031322 Shikimate kinase/gluconokinase IPR000623 Shikimate kinase/Threonine synthase-like 1 IPR023000 Shikimate kinase, conserved site IPR000851 Ribosomal protein S5 IPR005712 Ribosomal protein S5, bacterial-type IPR005324 Ribosomal protein S5, C-terminal IPR020568 Ribosomal protein S5 domain 2-type fold IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup IPR013810 Ribosomal protein S5, N-terminal IPR018192 Ribosomal protein S5, N-terminal, conserved site IPR007446 Pilus assembly protein PilP IPR007813 Fimbrial assembly PilN IPR012338 Beta-lactamase/transpeptidase-like IPR001264 Glycosyl transferase, family 51 IPR023346 Lysozyme-like domain superfamily IPR036950 Penicillin binding protein transglycosylase domain IPR031376 Penicillin-binding protein, OB-like domain IPR001460 Penicillin-binding protein, transpeptidase IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR011767 Glutaredoxin active site IPR002109 Glutaredoxin IPR011906 Glutaredoxin domain IPR014025 Glutaredoxin subgroup IPR037944 Peroxiredoxin-5-like IPR013740 Redoxin IPR036249 Thioredoxin-like superfamily IPR016181 Acyl-CoA N-acyltransferase IPR029419 Argininosuccinate lyase, C-terminal IPR009049 Argininosuccinate lyase IPR011244 Bifunctional argininosuccinate lyase/acetyltransferase IPR024083 Fumarase/histidase, N-terminal IPR020557 Fumarate lyase, conserved site IPR000362 Fumarate lyase family IPR022761 Fumarate lyase, N-terminal IPR000182 GNAT domain IPR008948 L-Aspartase-like IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily IPR005996 Ribosomal protein L30, bacterial-type IPR018038 Ribosomal protein L30, conserved site IPR016082 Ribosomal protein L30, ferredoxin-like fold domain IPR001518 Argininosuccinate synthase IPR018223 Argininosuccinate synthase, conserved site IPR023434 Argininosuccinate synthase, type 1 subfamily IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR036393 Acetylglutamate kinase-like superfamily IPR004662 Acetylglutamate kinase family IPR037528 Acetylglutamate kinase ArgB IPR001048 Aspartate/glutamate/uridylate kinase IPR041731 N-Acetyl-L-glutamate kinase, noncyclic IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 IPR036291 NAD(P)-binding domain superfamily IPR000534 Semialdehyde dehydrogenase, NAD-binding IPR012280 Semialdehyde dehydrogenase, dimerisation domain IPR010169 Acetylornithine deacetylase ArgE IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site IPR036264 Bacterial exopeptidase dimerisation domain IPR002933 Peptidase M20 IPR011650 Peptidase M20, dimerisation domain IPR021135 Phosphoenolpyruvate carboxylase IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type IPR018129 Phosphoenolpyruvate carboxylase, Lys active site IPR033129 Phosphoenolpyruvate carboxylase, His active site IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily IPR029041 FAD-linked oxidoreductase-like IPR003171 Methylenetetrahydrofolate reductase IPR004620 5,10-methylenetetrahydrofolate reductase IPR036393 Acetylglutamate kinase-like superfamily IPR041743 Bifunctional aspartokinase/homoserine dehydrogenase, N-terminal catalytic domain IPR001048 Aspartate/glutamate/uridylate kinase IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding IPR001341 Aspartate kinase IPR018042 Aspartate kinase, conserved site IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I IPR001342 Homoserine dehydrogenase, catalytic IPR019811 Homoserine dehydrogenase, conserved site IPR036291 NAD(P)-binding domain superfamily IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme IPR011821 O-succinylhomoserine (thiol)-lyase IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR002084 Methionine repressor MetJ IPR023453 Methionine repressor MetJ domain superfamily IPR010985 Ribbon-helix-helix IPR036227 Ribosomal L18e/L15P superfamily IPR030878 Ribosomal protein L15 IPR005749 Ribosomal protein L15, bacterial-type IPR001196 Ribosomal protein L15, conserved site IPR021131 Ribosomal protein L18e/L15P IPR015884 Malic enzyme, conserved site IPR012301 Malic enzyme, N-terminal domain IPR037062 Malic enzyme, N-terminal domain superfamily IPR012302 Malic enzyme, NAD-binding IPR001891 Malic oxidoreductase IPR036291 NAD(P)-binding domain superfamily IPR002024 Bacterioferritin IPR012347 Ferritin-like IPR009040 Ferritin-like diiron domain IPR009078 Ferritin-like superfamily IPR008331 Ferritin/DPS protein domain IPR007419 BFD-like [2Fe-2S]-binding domain IPR041854 BFD-like [2Fe-2S]-binding domain superfamily IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain IPR004161 Translation elongation factor EFTu-like, domain 2 IPR033720 Elongation factor Tu, domain 2 IPR031157 Tr-type G domain, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR005225 Small GTP-binding protein domain IPR000795 Transcription factor, GTP-binding domain IPR009000 Translation protein, beta-barrel domain superfamily IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle IPR004160 Translation elongation factor EFTu/EF1A, C-terminal IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain IPR004161 Translation elongation factor EFTu-like, domain 2 IPR033720 Elongation factor Tu, domain 2 IPR031157 Tr-type G domain, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR005225 Small GTP-binding protein domain IPR000795 Transcription factor, GTP-binding domain IPR009000 Translation protein, beta-barrel domain superfamily IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle IPR004160 Translation elongation factor EFTu/EF1A, C-terminal IPR041095 Elongation Factor G, domain II IPR009022 Elongation factor G, domain III IPR035647 EF-G domain III/V-like IPR035649 EFG, domain V IPR000640 Elongation factor EFG, domain V-like IPR004161 Translation elongation factor EFTu-like, domain 2 IPR031157 Tr-type G domain, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR020568 Ribosomal protein S5 domain 2-type fold IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup IPR005225 Small GTP-binding protein domain IPR000795 Transcription factor, GTP-binding domain IPR009000 Translation protein, beta-barrel domain superfamily IPR004540 Translation elongation factor EFG/EF2 IPR005517 Translation elongation factor EFG/EF2, domain IV IPR000235 Ribosomal protein S5/S7 IPR005717 Ribosomal protein S7, bacterial/organellar-type IPR020606 Ribosomal protein S7, conserved site IPR023798 Ribosomal protein S7 domain IPR036823 Ribosomal protein S7 domain superfamily IPR012340 Nucleic acid-binding, OB-fold IPR006032 Ribosomal protein S12/S23 IPR005679 Ribosomal protein S12, bacterial-type IPR027396 DsrEFH-like IPR023526 Sulphur relay, TusB IPR007215 Sulphur relay, TusB/DsrH IPR027396 DsrEFH-like IPR003787 Sulphur relay, DsrE/F-like protein IPR017462 Sulphur relay, TusC/DsrF IPR027396 DsrEFH-like IPR003787 Sulphur relay, DsrE/F-like protein IPR017463 Sulphur relay, TusD/DsrE IPR026593 Protein translocase subunit SecY IPR002208 SecY/SEC61-alpha family IPR030659 SecY conserved site IPR023201 SecY domain superfamily IPR039446 Transcriptional regulator DauR-like IPR039445 Transcriptional regulator DauR-like, HTH domain IPR013559 YheO-like IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily IPR007236 SlyX IPR029055 Nucleophile aminohydrolases, N-terminal IPR000246 Peptidase T2, asparaginase 2 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain IPR006153 Cation/H+ exchanger IPR004771 K+/H+ exchanger IPR020884 Glutathione-regulated potassium-efflux system protein KefB IPR038770 Sodium/solute symporter superfamily IPR036291 NAD(P)-binding domain superfamily IPR003148 Regulator of K+ conductance, N-terminal IPR003680 Flavodoxin-like fold IPR029039 Flavoprotein-like superfamily IPR023947 Glutathione-regulated potassium-efflux system ancillary protein KefG IPR000473 Ribosomal protein L36 IPR035977 Ribosomal protein L36 superfamily IPR003593 AAA+ ATPase domain IPR032781 ABC-transporter extension domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR029058 Alpha/Beta hydrolase fold IPR000073 Alpha/beta hydrolase fold-1 IPR000952 AB hydrolase 4, conserved site IPR012020 AB hydrolase 4 family IPR010648 Uncharacterised protein family UPF0270 IPR036685 YehU-like superfamily IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR006082 Phosphoribulokinase IPR006083 Phosphoribulokinase/uridine kinase IPR018490 Cyclic nucleotide-binding-like IPR018488 Cyclic nucleotide-binding, conserved site IPR000595 Cyclic nucleotide-binding domain IPR012318 Crp-type HTH domain IPR014710 RmlC-like jelly roll fold IPR018335 Transcription regulator HTH, Crp-type, conserved site IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR016161 Aldehyde/histidinol dehydrogenase IPR016163 Aldehyde dehydrogenase, C-terminal IPR016160 Aldehyde dehydrogenase, cysteine active site IPR029510 Aldehyde dehydrogenase, glutamic acid active site IPR016162 Aldehyde dehydrogenase, N-terminal IPR015590 Aldehyde dehydrogenase domain IPR017649 Succinylglutamate-semialdehyde dehydrogenase IPR016181 Acyl-CoA N-acyltransferase IPR007041 Arginine N-succinyltransferase AstA/AruG IPR017650 Arginine N-succinyltransferase IPR027437 30s ribosomal protein S13, C-terminal IPR001892 Ribosomal protein S13 IPR010979 Ribosomal protein S13-like, H2TH IPR019980 Ribosomal protein S13, bacterial-type IPR018269 Ribosomal protein S13, conserved site IPR017652 Acetyl/Succinylornithine transaminase family, bacteria IPR004636 Acetylornithine/Succinylornithine transaminase family IPR005814 Aminotransferase class-III IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR029062 Class I glutamine amidotransferase-like IPR017926 Glutamine amidotransferase IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain IPR002305 Aminoacyl-tRNA synthetase, class Ic IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR002306 Tryptophan-tRNA ligase IPR024109 Tryptophan-tRNA ligase, bacterial-type IPR036412 HAD-like superfamily IPR006439 HAD hydrolase, subfamily IA IPR006549 HAD-superfamily hydrolase,subfamily IIIA IPR041492 Haloacid dehalogenase-like hydrolase IPR023214 HAD superfamily IPR023198 Phosphoglycolate phosphatase-like, domain 2 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic IPR037512 Phosphoglycolate phosphatase, prokaryotic IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB IPR029028 Alpha/beta knot methyltransferases IPR029064 50S ribosomal protein L30e-like IPR004441 RNA methyltransferase TrmH family IPR001537 tRNA/rRNA methyltransferase, SpoU type IPR013123 RNA 2-O ribose methyltransferase, substrate binding IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily IPR029045 ClpP/crotonase-like domain superfamily IPR001753 Enoyl-CoA hydratase/isomerase IPR012799 Fatty oxidation complex, alpha subunit FadB IPR036291 NAD(P)-binding domain superfamily IPR001971 Ribosomal protein S11 IPR019981 Ribosomal protein S11, bacterial-type IPR018102 Ribosomal S11, conserved site IPR036967 Ribosomal protein S11 superfamily IPR011129 Cold shock domain IPR040476 RNase II/RNase R, cold shock domain IPR012340 Nucleic acid-binding, OB-fold IPR013223 Ribonuclease B, N-terminal OB domain IPR001900 Ribonuclease II/R IPR022966 Ribonuclease II/R, conserved site IPR004476 Ribonuclease II/ribonuclease R IPR011805 Ribonuclease R IPR013668 Ribonuclease R winged-helix domain IPR022967 RNA-binding domain, S1 IPR003029 S1 domain IPR030489 Transcription regulator Rrf2-type, conserved site IPR000944 Transcription regulator Rrf2-type IPR023761 Transcriptional repressor HTH, NsrR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain IPR017927 FAD-binding domain, ferredoxin reductase-type IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain IPR000971 Globin IPR009050 Globin-like superfamily IPR012292 Globin/Protoglobin IPR023950 Flavohemoprotein IPR001433 Oxidoreductase FAD/NAD(P)-binding IPR017938 Riboflavin synthase-like beta-barrel IPR006597 Sel1-like repeat IPR011990 Tetratricopeptide-like helical domain superfamily IPR018220 Adenylosuccinate synthase, GTP-binding site IPR033128 Adenylosuccinate synthase, active site IPR042109 Adenylosuccinate synthetase, domain 1 IPR042110 Adenylosuccinate synthetase, domain 2 IPR042111 Adenylosuccinate synthetase, domain 3 IPR001114 Adenylosuccinate synthetase IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR019201 Protein of unknown function DUF2065 IPR001107 Band 7 domain IPR036013 Band 7/SPFH domain superfamily IPR010200 HflC IPR001107 Band 7 domain IPR036013 Band 7/SPFH domain superfamily IPR010201 HflK IPR020980 Menbrane protein HflK, N-terminal IPR001972 Stomatin family IPR035647 EF-G domain III/V-like IPR030394 HflX-type guanine nucleotide-binding (G) domain IPR032305 GTP-binding protein, middle domain IPR006073 GTP binding domain IPR016496 GTPase HflX IPR025121 GTPase HflX, N-terminal IPR042108 GTPase HflX, N-terminal domain superfamily IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR022801 Ribosomal protein S4/S9 IPR001912 Ribosomal protein S4/S9, N-terminal IPR005709 Ribosomal protein S4, bacterial-type IPR018079 Ribosomal protein S4, conserved site IPR002942 RNA-binding S4 domain IPR036986 RNA-binding S4 domain superfamily IPR005001 RNA-binding protein Hfq IPR010920 LSM domain superfamily IPR039657 Dimethylallyltransferase IPR018022 IPP transferase IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR014762 DNA mismatch repair, conserved site IPR020667 DNA mismatch repair protein, MutL IPR002099 DNA mismatch repair protein family, N-terminal IPR013507 DNA mismatch repair protein, S5 domain 2-like IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR038973 DNA mismatch repair protein MutL/Mlh/Pms IPR014790 MutL, C-terminal, dimerisation IPR042120 MutL, C-terminal domain, dimerisation subdomain IPR042121 MutL, C-terminal domain, regulatory subdomain IPR037198 MutL, C-terminal domain superfamily IPR020568 Ribosomal protein S5 domain 2-type fold IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site IPR013542 Domain of unknown function DUF1730 IPR004453 Epoxyqueuosine reductase QueG IPR011262 DNA-directed RNA polymerase, insert domain IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type IPR011773 DNA-directed RNA polymerase, alpha subunit IPR036603 RNA polymerase, RBP11-like subunit IPR011260 RNA polymerase, alpha subunit, C-terminal IPR036643 DNA-directed RNA polymerase, insert domain superfamily IPR013520 Exonuclease, RNase T/DNA polymerase III IPR022894 Oligoribonuclease IPR012337 Ribonuclease H-like superfamily IPR036397 Ribonuclease H superfamily IPR000456 Ribosomal protein L17 IPR036373 Ribosomal protein L17 superfamily IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR004881 Ribosome biogenesis GTPase RsgA IPR010914 RsgA GTPase domain IPR003817 Phosphatidylserine decarboxylase-related IPR033177 Phosphatidylserine decarboxylase IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 IPR017850 Alkaline-phosphatase-like, core domain superfamily IPR011258 BPG-independent PGAM, N-terminal IPR006124 Metalloenzyme IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent IPR001763 Rhodanese-like domain IPR036873 Rhodanese-like domain superfamily IPR003708 Bacterial protein export chaperone SecB IPR035958 SecB-like superfamily IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily IPR013328 6-phosphogluconate dehydrogenase, domain 2 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal IPR036291 NAD(P)-binding domain superfamily IPR001451 Hexapeptide repeat IPR018357 Hexapeptide transferase, conserved site IPR010493 Serine acetyltransferase, N-terminal IPR042122 Serine acetyltransferase, N-terminal domain superfamily IPR005881 Serine O-acetyltransferase IPR011004 Trimeric LpxA-like superfamily IPR011055 Duplicated hybrid motif IPR016047 Peptidase M23 IPR023772 DNA-binding HTH domain, TetR-type, conserved site IPR009057 Homeobox-like domain superfamily IPR001647 DNA-binding HTH domain, TetR-type IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily IPR013571 Transcription regulator QacR, C-terminal IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) IPR006195 Aminoacyl-tRNA synthetase, class II IPR004525 Elongation factor P--(R)-beta-lysine ligase IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain IPR036188 FAD/NAD(P)-binding domain superfamily IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal IPR005884 Fumarate reductase, flavoprotein subunit IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit IPR036010 2Fe-2S ferredoxin-like superfamily IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site IPR012675 Beta-grasp domain superfamily IPR009051 Alpha-helical ferredoxin IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein IPR025192 Succinate dehydogenase/fumarate reductase N-terminal IPR003510 Fumarate reductase, subunit C IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit IPR003418 Fumarate reductase, subunit D IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily IPR015365 Elongation factor P, C-terminal IPR012340 Nucleic acid-binding, OB-fold IPR014722 Ribosomal protein L2, domain 2 IPR020599 Translation elongation factor P/YeiP IPR013185 Translation elongation factor, KOW-like IPR001059 Translation elongation factor P/YeiP, central IPR013852 Translation elongation factor P/YeiP, conserved site IPR011768 Translation elongation factor P IPR008991 Translation protein SH3-like domain superfamily IPR013785 Aldolase-type TIM barrel IPR022462 Lysine-2,3-aminomutase-like IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase IPR007197 Radical SAM IPR000821 Alanine racemase IPR009006 Alanine racemase/group IV decarboxylase, C-terminal IPR011079 Alanine racemase, C-terminal IPR001608 Alanine racemase, N-terminal IPR020622 Alanine racemase, pyridoxal-phosphate attachment site IPR029066 PLP-binding barrel IPR003416 MgtC/SapB/SrpB/YhiD family IPR018370 Chaperonin Cpn60, conserved site IPR001844 Chaperonin Cpn60 IPR002423 Chaperonin Cpn60/TCP-1 family IPR027409 GroEL-like apical domain superfamily IPR027413 GroEL-like equatorial domain superfamily IPR027410 TCP-1-like chaperonin intermediate domain superfamily IPR020818 GroES chaperonin family IPR037124 GroES chaperonin superfamily IPR018369 Chaperonin GroES, conserved site IPR011032 GroES-like superfamily IPR002528 Multi antimicrobial extrusion protein IPR022953 ATP-dependent 6-phosphofructokinase IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic IPR015912 Phosphofructokinase, conserved site IPR000023 Phosphofructokinase domain IPR035966 Phosphofructokinase superfamily IPR002524 Cation efflux protein IPR027470 Cation efflux protein, cytoplasmic domain IPR036837 Cation efflux protein, cytoplasmic domain superfamily IPR023783 Cation efflux pump FieF IPR027469 Cation efflux transmembrane domain superfamily IPR012899 LTXXQ motif family protein IPR011006 CheY-like superfamily IPR001867 OmpR/PhoB-type DNA-binding domain IPR001789 Signal transduction response regulator, receiver domain IPR039420 Transcriptional regulatory protein WalR-like IPR036388 Winged helix-like DNA-binding domain superfamily IPR011006 CheY-like superfamily IPR001867 OmpR/PhoB-type DNA-binding domain IPR001789 Signal transduction response regulator, receiver domain IPR039420 Transcriptional regulatory protein WalR-like IPR036388 Winged helix-like DNA-binding domain superfamily IPR032404 Two-component sensor protein CpxA, periplasmic domain IPR038515 CpxA, periplasmic domain superfamily IPR003660 HAMP domain IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR001189 Manganese/iron superoxide dismutase IPR019833 Manganese/iron superoxide dismutase, binding site IPR019832 Manganese/iron superoxide dismutase, C-terminal IPR019831 Manganese/iron superoxide dismutase, N-terminal IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily IPR029028 Alpha/beta knot methyltransferases IPR001537 tRNA/rRNA methyltransferase, SpoU type IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal IPR007313 FxsA cytoplasmic membrane protein IPR004708 Aspartate ammonia-lyase IPR024083 Fumarase/histidase, N-terminal IPR018951 Fumarase C, C-terminal IPR020557 Fumarate lyase, conserved site IPR000362 Fumarate lyase family IPR022761 Fumarate lyase, N-terminal IPR008948 L-Aspartase-like IPR016181 Acyl-CoA N-acyltransferase IPR000182 GNAT domain IPR004668 Anaerobic c4-dicarboxylate membrane transporter IPR003834 Cytochrome C biogenesis protein, transmembrane domain IPR035671 DsbD gamma IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily IPR022910 Thiol:disulphide interchange protein DsbD IPR036249 Thioredoxin-like superfamily IPR017937 Thioredoxin, conserved site IPR013766 Thioredoxin domain IPR011006 CheY-like superfamily IPR016032 Signal transduction response regulator, C-terminal effector IPR001789 Signal transduction response regulator, receiver domain IPR000792 Transcription regulator LuxR, C-terminal IPR006153 Cation/H+ exchanger IPR036318 FAD-binding, type PCMH-like superfamily IPR016169 FAD-binding, type PCMH, subdomain 2 IPR038770 Sodium/solute symporter superfamily IPR030151 K(+)/H(+) antiporter NhaP IPR023729 K(+)/H(+) antiporter NhaP2 IPR006037 Regulator of K+ conductance, C-terminal IPR036721 Regulator of K+ conductance, C-terminal domain superfamily IPR005170 Transporter-associated domain IPR038377 Sodium/glucose symporter superfamily IPR001734 Sodium/solute symporter IPR019899 Sodium/solute symporter, VC2705 subfamily IPR005677 Fumarate hydratase, class II IPR024083 Fumarase/histidase, N-terminal IPR018951 Fumarase C, C-terminal IPR020557 Fumarate lyase, conserved site IPR000362 Fumarate lyase family IPR022761 Fumarate lyase, N-terminal IPR008948 L-Aspartase-like IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain IPR011545 DEAD/DEAH box helicase domain IPR028619 ATP-dependent RNA helicase DbpA IPR014001 Helicase superfamily 1/2, ATP-binding domain IPR001650 Helicase, C-terminal IPR012677 Nucleotide-binding alpha-beta plait domain superfamily IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site IPR014014 RNA helicase, DEAD-box type, Q motif IPR026032 Probable 3-phenylpropionic acid transporter IPR024989 Major facilitator superfamily associated domain IPR036259 MFS transporter superfamily IPR011904 Acetate-CoA ligase IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain IPR025110 AMP-binding enzyme, C-terminal domain IPR020845 AMP-binding, conserved site IPR000873 AMP-dependent synthetase/ligase IPR042099 AMP-dependent synthetase-like superfamily IPR001874 Dehydroquinase, class II IPR018509 Dehydroquinase, class II, conserved site IPR036441 Dehydroquinase, class II superfamily IPR001249 Acetyl-CoA biotin carboxyl carrier IPR001882 Biotin-binding site IPR000089 Biotin/lipoyl attachment IPR011053 Single hybrid motif IPR004549 Acetyl-CoA carboxylase, biotin carboxylase IPR011761 ATP-grasp fold IPR013815 ATP-grasp fold, subdomain 1 IPR005481 Biotin carboxylase-like, N-terminal domain IPR011764 Biotin carboxylation domain IPR005482 Biotin carboxylase, C-terminal IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain IPR016185 Pre-ATP-grasp domain superfamily IPR011054 Rudiment single hybrid motif IPR004498 Ribosomal protein L11 methyltransferase IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR013785 Aldolase-type TIM barrel IPR035587 DUS-like, FMN-binding domain IPR032887 tRNA-dihydrouridine synthase B IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 IPR001269 tRNA-dihydrouridine synthase IPR018517 tRNA-dihydrouridine synthase, conserved site IPR005412 DNA-binding protein Fis IPR009057 Homeobox-like domain superfamily IPR002197 DNA binding HTH domain, Fis-type IPR011701 Major facilitator superfamily IPR020846 Major facilitator superfamily domain IPR036259 MFS transporter superfamily IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG IPR003593 AAA+ ATPase domain IPR032781 ABC-transporter extension domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR020568 Ribosomal protein S5 domain 2-type fold IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup IPR000100 Ribonuclease P IPR020539 Ribonuclease P, conserved site IPR035647 EF-G domain III/V-like IPR023582 Impact family IPR015796 Impact family, bacterial/archaeal IPR001498 Impact, N-terminal IPR036956 Impact, N-terminal domain superfamily IPR020568 Ribosomal protein S5 domain 2-type fold IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site IPR008334 5'-Nucleotidase, C-terminal IPR036907 5'-Nucleotidase, C-terminal domain superfamily IPR006146 5'-Nucleotidase, conserved site IPR006179 5'-Nucleotidase/apyrase IPR004843 Calcineurin-like phosphoesterase domain, ApaH type IPR041827 CpdB, N-terminal metallophosphatase domain IPR006294 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase IPR029052 Metallo-dependent phosphatase-like IPR005308 Orn/Lys/Arg decarboxylase, N-terminal IPR011193 Ornithine/lysine/arginine decarboxylase IPR000310 Orn/Lys/Arg decarboxylase, major domain IPR008286 Orn/Lys/Arg decarboxylase, C-terminal IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR002293 Amino acid/polyamine transporter I IPR004754 Amino acid antiporter IPR000878 Tetrapyrrole methylase IPR035996 Tetrapyrrole methylase superfamily IPR014777 Tetrapyrrole methylase, subdomain 1 IPR014776 Tetrapyrrole methylase, subdomain 2 IPR006366 Uroporphyrin-III C-methyltransferase IPR036291 NAD(P)-binding domain superfamily IPR037115 Sirohaem synthase, dimerisation domain superfamily IPR012409 Sirohaem synthase IPR028281 Siroheme synthase, central domain IPR019478 Sirohaem synthase, dimerisation domain IPR006367 Sirohaem synthase, N-terminal IPR003043 Uroporphiryn-III C-methyltransferase, conserved site IPR040970 CadC C-terminal domain 1 IPR001867 OmpR/PhoB-type DNA-binding domain IPR016032 Signal transduction response regulator, C-terminal effector IPR011990 Tetratricopeptide-like helical domain superfamily IPR039420 Transcriptional regulatory protein WalR-like IPR036388 Winged helix-like DNA-binding domain superfamily IPR009061 Putative DNA-binding domain superfamily IPR000551 MerR-type HTH domain IPR011788 Zn(II)-responsive transcriptional regulator IPR024051 AICAR transformylase, duplicated domain superfamily IPR016193 Cytidine deaminase-like IPR011607 Methylglyoxal synthase-like domain IPR036914 Methylglyoxal synthase-like domain superfamily IPR002695 Bifunctional purine biosynthesis protein PurH-like IPR011761 ATP-grasp fold IPR013815 ATP-grasp fold, subdomain 1 IPR016185 Pre-ATP-grasp domain superfamily IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain IPR000115 Phosphoribosylglycinamide synthetase IPR020560 Phosphoribosylglycinamide synthetase, C-domain IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily IPR020559 Phosphoribosylglycinamide synthetase, conserved site IPR020562 Phosphoribosylglycinamide synthetase, N-terminal IPR011054 Rudiment single hybrid motif IPR002500 Phosphoadenosine phosphosulphate reductase IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR011784 Sulphate adenylyltransferase, small subunit IPR000119 Histone-like DNA-binding protein IPR020816 Histone-like DNA-binding protein, conserved site IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily IPR041757 Sulfate adenylyltransferase subunit CysN, GTP-binding domain IPR031157 Tr-type G domain, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR005225 Small GTP-binding protein domain IPR011779 Sulphate adenylyltransferase, large subunit IPR000795 Transcription factor, GTP-binding domain IPR009000 Translation protein, beta-barrel domain superfamily IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal IPR000644 CBS domain IPR002550 CNNM, transmembrane domain IPR007338 Protein of unknown function DUF416 IPR023381 YP001051499.1-like domain superfamily IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain IPR023514 Glyoxylate/hydroxypyruvate reductase A IPR036291 NAD(P)-binding domain superfamily IPR005122 Uracil-DNA glycosylase-like IPR036895 Uracil-DNA glycosylase-like domain superfamily IPR038071 UROD/MetE-like superfamily IPR006361 Uroporphyrinogen decarboxylase HemE IPR000257 Uroporphyrinogen decarboxylase (URO-D) IPR022925 NADH pyrophosphatase NudC IPR015797 NUDIX hydrolase-like domain superfamily IPR020084 NUDIX hydrolase, conserved site IPR000086 NUDIX hydrolase domain IPR015376 Zinc ribbon, NADH pyrophosphatase IPR038309 Rsd/AlgQ superfamily IPR023785 Regulator of RNA polymerase sigma(70) subunit, Rsd IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ IPR012754 DNA-directed RNA polymerase, subunit beta-prime IPR000722 RNA polymerase, alpha subunit IPR006592 RNA polymerase, N-terminal IPR007080 RNA polymerase Rpb1, domain 1 IPR007066 RNA polymerase Rpb1, domain 3 IPR042102 RNA polymerase Rpb1, domain 3 superfamily IPR007083 RNA polymerase Rpb1, domain 4 IPR007081 RNA polymerase Rpb1, domain 5 IPR038120 RNA polymerase Rpb1, funnel domain superfamily IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain IPR015712 DNA-directed RNA polymerase, subunit 2 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type IPR007121 RNA polymerase, beta subunit, conserved site IPR007644 RNA polymerase, beta subunit, protrusion IPR007642 RNA polymerase Rpb2, domain 2 IPR037034 RNA polymerase Rpb2, domain 2 superfamily IPR007645 RNA polymerase Rpb2, domain 3 IPR007641 RNA polymerase Rpb2, domain 7 IPR014724 RNA polymerase Rpb2, OB-fold IPR000206 Ribosomal protein L7/L12 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like IPR013823 Ribosomal protein L7/L12, C-terminal IPR008932 Ribosomal protein L7/L12, oligomerisation IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily IPR022973 Ribosomal protein L10 IPR001790 Ribosomal protein L10P IPR005878 Ribosomal protein L1, bacterial-type IPR002143 Ribosomal protein L1 IPR023674 Ribosomal protein L1-like IPR028364 Ribosomal protein L1/ribosomal biogenesis protein IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich IPR023673 Ribosomal protein L1, conserved site IPR000911 Ribosomal protein L11/L12 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily IPR006519 Ribosomal protein L11, bacterial-type IPR020783 Ribosomal protein L11, C-terminal IPR036769 Ribosomal protein L11, C-terminal domain superfamily IPR020785 Ribosomal protein L11, conserved site IPR020784 Ribosomal protein L11, N-terminal IPR005824 KOW IPR006645 NusG, N-terminal IPR036735 NusG, N-terminal domain superfamily IPR014722 Ribosomal protein L2, domain 2 IPR001062 Transcription antitermination protein, NusG IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site IPR008991 Translation protein SH3-like domain superfamily IPR005807 SecE subunit of protein translocation complex, bacterial-like IPR038379 SecE superfamily IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit IPR004680 Citrate transporter-like domain IPR031312 Sodium/sulphate symporter, conserved site IPR006037 Regulator of K+ conductance, C-terminal IPR036721 Regulator of K+ conductance, C-terminal domain superfamily IPR030855 Bifunctional ligase/repressor BirA IPR004408 Biotin--acetyl-CoA-carboxylase ligase IPR004409 Biotin operon repressor, helix-turn-helix domain IPR003142 Biotin protein ligase, C-terminal IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain IPR013196 Helix-turn-helix, type 11 IPR008988 Transcriptional repressor, C-terminal IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR016166 FAD-binding domain, PCMH-type IPR036318 FAD-binding, type PCMH-like superfamily IPR016167 FAD-binding, type PCMH, subdomain 1 IPR016169 FAD-binding, type PCMH, subdomain 2 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily IPR006094 FAD linked oxidase, N-terminal IPR016270 CDP-alcohol phosphatidyltransferase class-II family IPR025202 Phospholipase D-like domain IPR001736 Phospholipase D/Transphosphatidylase IPR002891 Adenylyl-sulfate kinase IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR015942 Asp/Glu/hydantoin racemase IPR001920 Asp/Glu racemase IPR018187 Asp/Glu racemase, active site 1 IPR004391 Glutamate racemase IPR010101 TonB-dependent vitamin B12 transporter BtuB IPR039426 Vitamin B12 transporter BtuB-like IPR012910 TonB-dependent receptor, plug domain IPR037066 TonB-dependent receptor, plug domain superfamily IPR000531 TonB-dependent receptor-like, beta-barrel IPR010916 TonB box, conserved site IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily IPR010917 TonB-dependent receptor, conserved site IPR030390 RNA methyltransferase TrmA, active site IPR030391 RNA methyltransferase TrmA, conserved site IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA IPR010280 (Uracil-5)-methyltransferase family IPR009057 Homeobox-like domain superfamily IPR001647 DNA-binding HTH domain, TetR-type IPR023764 Transcriptional repressor HTH, FabR IPR036188 FAD/NAD(P)-binding domain superfamily IPR023753 FAD/NAD(P)-binding domain IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IPR022962 Soluble pyridine nucleotide transhydrogenase IPR002528 Multi antimicrobial extrusion protein IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR016874 Tetracenomycin polyketide synthesis O-methyltransferase TcmP IPR006200 Transcription regulator LexA IPR039418 LexA-like IPR036286 LexA/Signal peptidase-like superfamily IPR006199 LexA repressor, DNA-binding domain IPR006197 Peptidase S24, LexA-like IPR015927 Peptidase S24/S26A/S26B/S26C IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase IPR041728 GPAT/DHAPAT, acyltransferase domain IPR028354 Glycerol-3-phosphate acyltransferase, PlsB IPR002123 Phospholipid/glycerol acyltransferase IPR006370 4-hydroxybenzoate polyprenyltransferase-like IPR039653 Prenyltransferase IPR000537 UbiA prenyltransferase family IPR007440 Chorismate--pyruvate lyase IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily IPR005503 Flagellar basal body-associated protein FliL IPR038236 GlpG peptidase, N-terminal domain superfamily IPR022732 Peptidase S54, GlpG peptidase, N-terminal IPR022764 Peptidase S54, rhomboid domain IPR035952 Rhomboid-like superfamily IPR023662 Rhomboid protease GlpG IPR001763 Rhodanese-like domain IPR036873 Rhodanese-like domain superfamily IPR023695 Thiosulfate sulfurtransferase, bacterial IPR014284 RNA polymerase sigma-70 like domain IPR000943 RNA polymerase sigma-70 IPR009042 RNA polymerase sigma-70 region 1.2 IPR007627 RNA polymerase sigma-70 region 2 IPR007630 RNA polymerase sigma-70 region 4 IPR013325 RNA polymerase sigma factor, region 2 IPR013324 RNA polymerase sigma factor, region 3/4-like IPR012759 RNA polymerase sigma factor RpoH, proteobacteria IPR004513 Cell division protein FtsX IPR040690 FtsX, extracellular domain IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR005286 Cell division protein FtsE, ATP-binding IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR003593 AAA+ ATPase domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR013822 Signal recognition particle SRP54, helical bundle IPR004390 Signal-recognition particle receptor FtsY IPR036225 SRP/SRP receptor, N-terminal IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily IPR002052 DNA methylase, N-6 adenine-specific, conserved site IPR004398 RNA methyltransferase, RsmD IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR002771 Multiple antibiotic resistance (MarC)-related IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I IPR036291 NAD(P)-binding domain superfamily IPR003445 Cation transporter IPR004772 TrkH potassium transport family IPR011991 ArsR-like helix-turn-helix domain IPR001845 HTH ArsR-type DNA-binding domain IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR029058 Alpha/Beta hydrolase fold IPR022742 Serine aminopeptidase, S33 IPR000150 Cof family IPR036412 HAD-like superfamily IPR006379 HAD-superfamily hydrolase, subfamily IIB IPR023214 HAD superfamily IPR001633 EAL domain IPR035919 EAL domain superfamily IPR019494 FIST, C-domain IPR013702 FIST domain, N-terminal IPR000160 GGDEF domain IPR029787 Nucleotide cyclase IPR036412 HAD-like superfamily IPR006439 HAD hydrolase, subfamily IA IPR041492 Haloacid dehalogenase-like hydrolase IPR023214 HAD superfamily IPR011010 DNA breaking-rejoining enzyme, catalytic core IPR013762 Integrase-like, catalytic domain superfamily IPR002104 Integrase, catalytic domain IPR010998 Integrase/recombinase, N-terminal IPR004107 Integrase, SAM-like, N-terminal IPR011931 Tyrosine recombinase XerC IPR023009 Tyrosine recombinase XerC/XerD IPR018510 Diaminopimelate epimerase, active site IPR001653 Diaminopimelate epimerase, DapF IPR009006 Alanine racemase/group IV decarboxylase, C-terminal IPR002986 Diaminopimelate decarboxylase, LysA IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site IPR000183 Ornithine/DAP/Arg decarboxylase IPR029066 PLP-binding barrel IPR002908 Frataxin/CyaY IPR036524 Frataxin/CyaY superfamily IPR020895 Frataxin conserved site IPR000274 Adenylate cyclase, class-I IPR024686 Adenylate cyclase class-I, conserved site IPR024685 Adenylate cyclase class-I, N-terminal domain IPR000860 Porphobilinogen deaminase IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site IPR022417 Porphobilinogen deaminase, N-terminal IPR022418 Porphobilinogen deaminase, C-terminal IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase IPR039793 Uroporphyrinogen-III synthase IPR007470 Putative uroporphyrinogen-III C-methyltransferase HemX IPR005254 Heme biosynthesis-associated TPR protein IPR010817 HemY, N-terminal IPR011990 Tetratricopeptide-like helical domain superfamily IPR019731 Protein of unknown function DUF2607 IPR017927 FAD-binding domain, ferredoxin reductase-type IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain IPR001433 Oxidoreductase FAD/NAD(P)-binding IPR017938 Riboflavin synthase-like beta-barrel IPR036010 2Fe-2S ferredoxin-like superfamily IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain IPR001055 Adrenodoxin IPR018298 Adrenodoxin, iron-sulphur binding site IPR012675 Beta-grasp domain superfamily IPR011536 Ferredoxin 2Fe-2S type, proteobacteria IPR002830 UbiD decarboxylyase family IPR003593 AAA+ ATPase domain IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain IPR011129 Cold shock domain IPR012340 Nucleic acid-binding, OB-fold IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR041703 Transcription termination factor Rho, ATP binding domain IPR011112 Rho termination factor, N-terminal IPR036269 Rho termination factor, N-terminal domain superfamily IPR011113 Rho termination factor, RNA-binding domain IPR004665 Transcription termination factor Rho IPR005746 Thioredoxin IPR036249 Thioredoxin-like superfamily IPR017937 Thioredoxin, conserved site IPR013766 Thioredoxin domain IPR011545 DEAD/DEAH box helicase domain IPR014001 Helicase superfamily 1/2, ATP-binding domain IPR001650 Helicase, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site IPR023554 ATP-dependent RNA helicase RhlB type IPR014014 RNA helicase, DEAD-box type, Q motif IPR023709 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase IPR003695 Ppx/GppA phosphatase IPR030673 Pyrophosphatase, GppA/Ppx-type IPR003744 Queuosine precursor transporter IPR006513 Conserved hypothetical protein CHP01626, YtfJ IPR006513 Conserved hypothetical protein CHP01626, YtfJ IPR011545 DEAD/DEAH box helicase domain IPR004589 DNA helicase, ATP-dependent, RecQ type IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial IPR014001 Helicase superfamily 1/2, ATP-binding domain IPR001650 Helicase, C-terminal IPR010997 HRDC-like superfamily IPR002121 HRDC domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain IPR018982 RQC domain IPR036388 Winged helix-like DNA-binding domain superfamily IPR000620 EamA domain IPR004626 RarD protein IPR004778 Homoserine/Threonine efflux protein IPR001123 Amino acid exporter protein, LeuE-type IPR004778 Homoserine/Threonine efflux protein IPR001123 Amino acid exporter protein, LeuE-type IPR000101 Gamma-glutamyltranspeptidase IPR029055 Nucleophile aminohydrolases, N-terminal IPR013986 DExx box DNA helicase domain superfamily IPR005753 DNA helicase, ATP-dependent, UvrD type IPR014017 UvrD-like DNA helicase, C-terminal IPR000212 DNA helicase, UvrD/REP type IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR014016 UvrD-like helicase, ATP-binding domain IPR034739 UvrD/AddA helicase, N-terminal IPR009491 Protein of unknown function DUF1107 IPR007801 Uncharacterised protein family UPF0276 IPR036237 Xylose isomerase-like superfamily IPR011701 Major facilitator superfamily IPR020846 Major facilitator superfamily domain IPR036259 MFS transporter superfamily IPR023697 Multidrug resistance protein MdtL IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR023746 Transcription regulator HTH, YidZ IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR037402 HTH-type transcriptional regulator YidZ, PBP2 domain IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal IPR036005 Creatinase/aminopeptidase-like IPR000587 Creatinase, N-terminal IPR000994 Peptidase M24 IPR001714 Peptidase M24, methionine aminopeptidase IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal IPR036005 Creatinase/aminopeptidase-like IPR000587 Creatinase, N-terminal IPR000994 Peptidase M24 IPR001714 Peptidase M24, methionine aminopeptidase IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site IPR013785 Aldolase-type TIM barrel IPR010722 Biotin and thiamin synthesis-associated domain IPR007197 Radical SAM IPR012726 Thiazole biosynthesis ThiH IPR034428 ThiH/NocL/HydG-like IPR013785 Aldolase-type TIM barrel IPR033983 Thiazole synthase ThiG IPR008867 Thiazole synthase IPR012675 Beta-grasp domain superfamily IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp IPR010035 ThiS, thiamine-biosynthesis IPR003749 Sulfur carrier ThiS/MoaD-like IPR002569 Peptide methionine sulphoxide reductase MsrA IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily IPR012731 Thiazole biosynthesis adenylyltransferase ThiF IPR000594 THIF-type NAD/FAD binding fold IPR035985 Ubiquitin-activating enzyme IPR013785 Aldolase-type TIM barrel IPR036206 Thiamin phosphate synthase superfamily IPR022998 Thiamine phosphate synthase/TenI IPR034291 Thiamine phosphate synthase IPR037509 Phosphomethylpyrimidine synthase IPR025747 ThiC-associated domain IPR038521 ThiC/Bza superfamily IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B IPR003691 Putative fluoride ion transporter CrcB IPR000184 Bacterial surface antigen (D15) IPR039910 Surface antigen D15-like IPR035243 TamA, POTRA domain 1 IPR001451 Hexapeptide repeat IPR011004 Trimeric LpxA-like superfamily IPR009962 Protein of unknown function DUF1488 IPR036692 Shew3726-like superfamily IPR036291 NAD(P)-binding domain superfamily IPR041121 SDH, C-terminal IPR011342 Shikimate dehydrogenase IPR013708 Shikimate dehydrogenase substrate binding, N-terminal IPR022893 Shikimate dehydrogenase family IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase IPR001260 Coproporphyrinogen III oxidase, aerobic IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily IPR018375 Coproporphyrinogen III oxidase, conserved site IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily IPR023535 Threonylcarbamoyl-AMP synthase IPR006070 YrdC-like domain IPR033747 Class I PurE IPR000031 PurE domain IPR024694 PurE, prokaryotic type IPR035893 PurE domain superfamily IPR011761 ATP-grasp fold IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type IPR013815 ATP-grasp fold, subdomain 1 IPR016185 Pre-ATP-grasp domain superfamily IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit IPR040686 Phosphoribosylaminoimidazole carboxylase, C-terminal domain IPR011054 Rudiment single hybrid motif IPR007452 Translocation and assembly module TamB IPR000380 DNA topoisomerase, type IA IPR013498 DNA topoisomerase, type IA, zn finger IPR007456 Smg IPR003488 DNA recombination-mediator protein A IPR041614 DprA, winged helix domain IPR036388 Winged helix-like DNA-binding domain superfamily IPR023635 Peptide deformylase IPR036821 Peptide deformylase superfamily IPR005794 Methionyl-tRNA formyltransferase IPR005793 Formyl transferase, C-terminal IPR037022 Formyl transferase, C-terminal domain superfamily IPR002376 Formyl transferase, N-terminal IPR036477 Formyl transferase, N-terminal domain superfamily IPR011034 Formyl transferase-like, C-terminal domain superfamily IPR001555 Phosphoribosylglycinamide formyltransferase, active site IPR041711 Methionyl-tRNA formyltransferase, N-terminal domain IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type IPR035926 NusB-like superfamily IPR006027 NusB/RsmB/TIM44 IPR023267 RNA (C5-cytosine) methyltransferase IPR004573 rRNA small subunit methyltransferase B IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR006036 Potassium uptake protein TrkA IPR036291 NAD(P)-binding domain superfamily IPR006037 Regulator of K+ conductance, C-terminal IPR036721 Regulator of K+ conductance, C-terminal domain superfamily IPR003148 Regulator of K+ conductance, N-terminal IPR003445 Cation transporter IPR004772 TrkH potassium transport family IPR009288 Gamma-glutamylcyclotransferase, AIG2-like IPR039126 Gamma-glutamylaminecyclotransferase IPR013024 Gamma-glutamyl cyclotransferase-like IPR036568 Gamma-glutamyl cyclotransferase-like superfamily IPR004254 AdipoR/Haemolysin-III-related IPR005744 Hly-III IPR014752 Arrestin, C-terminal IPR014756 Immunoglobulin E-set IPR009776 Sporulation stage 0, protein M IPR009383 Protein of unknown function DUF1040 IPR038134 YihD-like superfamily IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG IPR032879 FixG, C-terminal immunoglobulin-like domain IPR013783 Immunoglobulin-like fold IPR002575 Aminoglycoside phosphotransferase IPR011009 Protein kinase-like domain superfamily IPR032882 SrkA/RdoA protein kinase IPR001853 DSBA-like thioredoxin domain IPR023205 Thiol:disulphide interchange protein DsbA/DsbL IPR036249 Thioredoxin-like superfamily IPR013766 Thioredoxin domain IPR001853 DSBA-like thioredoxin domain IPR023205 Thiol:disulphide interchange protein DsbA/DsbL IPR036249 Thioredoxin-like superfamily IPR013766 Thioredoxin domain IPR002123 Phospholipid/glycerol acyltransferase IPR003593 AAA+ ATPase domain IPR001208 MCM domain IPR004482 Mg chelatase-related protein IPR025158 Mg chelatase-related protein, C-terminal domain IPR000523 Magnesium chelatase ChlI domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR020568 Ribosomal protein S5 domain 2-type fold IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup IPR008254 Flavodoxin/nitric oxide synthase IPR001226 Flavodoxin, conserved site IPR026816 Flavodoxin domain IPR029039 Flavoprotein-like superfamily IPR012846 Acetolactate synthase, large subunit, biosynthetic IPR039368 Acetolactate synthase large subunit, TPP binding domain IPR029035 DHS-like NAD/FAD-binding domain superfamily IPR029061 Thiamin diphosphate-binding fold IPR012000 Thiamine pyrophosphate enzyme, central domain IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain IPR000399 TPP-binding enzyme, conserved site IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding IPR002912 ACT domain IPR001544 Aminotransferase class IV IPR018300 Aminotransferase, class IV, conserved site IPR036038 Aminotransferase-like, PLP-dependent enzymes IPR005785 Branched-chain amino acid aminotransferase I IPR033939 Branched-chain aminotransferase IPR042096 Dihydroxy-acid dehydratase, C-terminal IPR004404 Dihydroxy-acid dehydratase IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site IPR037237 IlvD/EDD, N-terminal domain IPR001926 Pyridoxal-phosphate dependent enzyme IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site IPR001721 Threonine dehydratase, ACT-like domain IPR038110 Threonine dehydratase, ACT-like domain superfamily IPR005787 Threonine dehydratase, biosynthetic IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR004812 Drug resistance transporter Bcr/CmlA subfamily IPR011701 Major facilitator superfamily IPR020846 Major facilitator superfamily domain IPR036259 MFS transporter superfamily IPR018313 Solute-binding protein family 3, conserved site IPR001638 Solute-binding protein family 3/N-terminal domain of MltF IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase IPR038009 GlmU, C-terminal LbH domain IPR001451 Hexapeptide repeat IPR018357 Hexapeptide transferase, conserved site IPR025877 MobA-like NTP transferase IPR029044 Nucleotide-diphospho-sugar transferases IPR011004 Trimeric LpxA-like superfamily IPR008162 Inorganic pyrophosphatase IPR036649 Inorganic pyrophosphatase superfamily IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily IPR001469 ATP synthase, F1 complex, delta/epsilon subunit IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal IPR003593 AAA+ ATPase domain IPR005722 ATP synthase, F1 complex, beta subunit IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR035968 ATP synthase, F1 complex, gamma subunit superfamily IPR000131 ATP synthase, F1 complex, gamma subunit IPR023632 ATP synthase, F1 complex, gamma subunit conserved site IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily IPR000793 ATP synthase, alpha subunit, C-terminal IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily IPR033732 ATP synthase, F1 complex, alpha subunit nucleotide-binding domain IPR005294 ATP synthase, F1 complex, alpha subunit IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily IPR020781 ATPase, OSCP/delta subunit, conserved site IPR000711 ATPase, OSCP/delta subunit IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast IPR005864 ATP synthase, F0 complex, subunit b, bacterial IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast IPR000454 ATP synthase, F0 complex, subunit C IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site IPR038662 F1F0 ATP synthase subunit C superfamily IPR002379 V-ATPase proteolipid subunit C-like domain IPR035921 F/V-ATP synthase subunit C superfamily IPR000568 ATP synthase, F0 complex, subunit A IPR023011 ATP synthase, F0 complex, subunit A, active site IPR035908 ATP synthase, F0 complex, subunit A superfamily IPR005598 ATP synthase protein I IPR041468 ParB/Spo0J, HTH domain IPR004437 ParB/RepB/Spo0J partition protein IPR003115 ParB/Sulfiredoxin IPR036086 ParB/Sulfiredoxin superfamily IPR000146 Fructose-1,6-bisphosphatase class 1 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal IPR028343 Fructose-1,6-bisphosphatase IPR020548 Fructose-1,6-bisphosphatase, active site IPR025669 AAA domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR003682 rRNA small subunit methyltransferase G IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR036188 FAD/NAD(P)-binding domain superfamily IPR026904 GidA associated domain 3 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related IPR020595 MnmG-related, conserved site IPR005757 Murein peptide ligase IPR036565 Mur-like, catalytic domain superfamily IPR004101 Mur ligase, C-terminal IPR036615 Mur ligase, C-terminal domain superfamily IPR013221 Mur ligase, central IPR000713 Mur ligase, N-terminal catalytic domain IPR036551 Flavin prenyltransferase-like IPR003382 Flavoprotein IPR004507 Flavin prenyltransferase UbiX-like IPR006061 Solute-binding family 1, conserved site IPR005967 Thiamin/thiamin pyrophosphate ABC transporter, substrate-binding protein, Proteobacteria IPR005948 Thiamine/thiamin pyrophosphate-binding periplasmic protein, ABC transporter IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR005947 Thiamine ABC transporter, permease protein IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR005968 Thiamine ABC transporter, ATP-binding protein ThiQ IPR011852 TRAP transporter solute receptor, TAXI family IPR001669 Arginine repressor IPR020899 Arginine repressor, C-terminal IPR036251 Arginine repressor, C-terminal domain superfamily IPR020900 Arginine repressor, DNA-binding domain IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR001557 L-lactate/malate dehydrogenase IPR022383 Lactate/malate dehydrogenase, C-terminal IPR001236 Lactate/malate dehydrogenase, N-terminal IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal IPR001252 Malate dehydrogenase, active site IPR010097 Malate dehydrogenase, type 1 IPR023958 Malate dehydrogenase, type 1, bacterial IPR036291 NAD(P)-binding domain superfamily IPR008949 Isoprenoid synthase domain superfamily IPR000092 Polyprenyl synthetase IPR033749 Polyprenyl synthetase, conserved site IPR036164 L21-like superfamily IPR028909 Ribosomal protein L21-like IPR001787 Ribosomal protein L21 IPR018258 Ribosomal protein L21, conserved site IPR001684 Ribosomal protein L27 IPR018261 Ribosomal protein L27, conserved site IPR031167 OBG-type guanine nucleotide-binding (G) domain IPR035101 GTP-binding protein, Obg-type IPR014100 GTP-binding protein Obg/CgtA IPR006074 GTP1/OBG, conserved site IPR006169 GTP1/OBG domain IPR036726 GTP1/OBG domain superfamily IPR006073 GTP binding domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR010619 Putative threonine/serine exporter IPR024528 Threonine/Serine exporter, ThrE IPR020914 Uncharacterised protein family UPF0442 IPR012259 Dihydrofolate reductase IPR024072 Dihydrofolate reductase-like domain superfamily IPR017925 Dihydrofolate reductase conserved site IPR001796 Dihydrofolate reductase domain IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) IPR004843 Calcineurin-like phosphoesterase domain, ApaH type IPR029052 Metallo-dependent phosphatase-like IPR007474 ApaG domain IPR036767 ApaG domain superfamily IPR023065 Uncharacterised protein family ApaG IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm IPR023165 rRNA adenine dimethylase-like IPR020596 Ribosomal RNA adenine methylase transferase, conserved site IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal IPR011530 Ribosomal RNA adenine dimethylase IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR037510 4-hydroxythreonine-4-phosphate dehydrogenase IPR005255 PdxA family IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type IPR023034 Peptidyl-prolyl isomerase SurA IPR015391 SurA N-terminal IPR027304 Trigger factor/SurA domain superfamily IPR020889 LPS-assembly protein LptD IPR007543 LptD, C-terminal IPR005653 Organic solvent tolerance-like, N-terminal IPR023749 Co-chaperone DjlA IPR007791 Co-chaperone DjlA, N-terminal IPR001623 DnaJ domain IPR036869 Chaperone J-domain superfamily IPR029024 TerB-like IPR004431 3-isopropylmalate dehydratase, small subunit IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain IPR033940 3-isopropylmalate dehydratase, swivel domain IPR004430 3-isopropylmalate dehydratase, large subunit IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain IPR018136 Aconitase family, 4Fe-4S cluster binding site IPR036008 Aconitase, iron-sulfur domain IPR033941 3-Isopropylmalate dehydratase, catalytic domain IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site IPR024084 Isopropylmalate dehydrogenase-like domain IPR004429 Isopropylmalate dehydrogenase IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site IPR013785 Aldolase-type TIM barrel IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily IPR005671 2-isopropylmalate synthase, bacterial-type IPR000891 Pyruvate carboxyltransferase IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR020845 AMP-binding, conserved site IPR000873 AMP-dependent synthetase/ligase IPR042099 AMP-dependent synthetase-like superfamily IPR012846 Acetolactate synthase, large subunit, biosynthetic IPR039368 Acetolactate synthase large subunit, TPP binding domain IPR029035 DHS-like NAD/FAD-binding domain superfamily IPR029061 Thiamin diphosphate-binding fold IPR012000 Thiamine pyrophosphate enzyme, central domain IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain IPR000399 TPP-binding enzyme, conserved site IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding IPR004789 Acetolactate synthase, small subunit IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal IPR019455 Acetolactate synthase, small subunit, C-terminal IPR002912 ACT domain IPR039557 AHAS, ACT domain IPR000160 GGDEF domain IPR029787 Nucleotide cyclase IPR000160 GGDEF domain IPR029787 Nucleotide cyclase IPR000160 GGDEF domain IPR029787 Nucleotide cyclase IPR001697 Pyruvate kinase IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily IPR040442 Pyruvate kinase-like domain superfamily IPR011037 Pyruvate kinase-like, insert domain superfamily IPR018209 Pyruvate kinase, active site IPR015793 Pyruvate kinase, barrel IPR015795 Pyruvate kinase, C-terminal IPR036918 Pyruvate kinase, C-terminal domain superfamily IPR015806 Pyruvate kinase, insert domain superfamily IPR014036 DeoR C-terminal sensor domain IPR001034 DeoR-type HTH domain IPR037171 NagB/RpiA transferase-like IPR018356 Transcription regulator, HTH DeoR-type, conserved site IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR017932 Glutamine amidotransferase type 2 domain IPR035466 GlmS/AgaS, SIS domain 1 IPR035490 GlmS/FrlB, SIS domain 2 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising IPR029055 Nucleophile aminohydrolases, N-terminal IPR001347 Sugar isomerase (SIS) IPR011006 CheY-like superfamily IPR001867 OmpR/PhoB-type DNA-binding domain IPR006291 Transcriptional regulatory protein PcoR, heavy metal response IPR001789 Signal transduction response regulator, receiver domain IPR039420 Transcriptional regulatory protein WalR-like IPR036388 Winged helix-like DNA-binding domain superfamily IPR006290 Heavy metal sensor kinase IPR003660 HAMP domain IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA IPR018211 Alcohol dehydrogenase, iron-type, conserved site IPR016205 Glycerol dehydrogenase IPR012736 Dihydroxyacetone kinase DhaK, subunit 1 IPR004006 DhaK domain IPR012737 Dihydroxyacetone kinase, subunit L IPR004007 DhaL domain IPR036117 DhaL domain superfamily IPR008279 PEP-utilising enzyme, mobile domain IPR018274 PEP-utilising enzyme, active site IPR000121 PEP-utilising enzyme, C-terminal IPR023151 PEP-utilising enzyme, conserved site IPR036637 Phosphohistidine domain superfamily IPR024692 Phosphotransferase system, enzyme I IPR006318 Phosphotransferase system, enzyme I-like IPR008731 Phosphotransferase system, enzyme I N-terminal IPR036618 PtsI, HPr-binding domain superfamily IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily IPR040442 Pyruvate kinase-like domain superfamily IPR003593 AAA+ ATPase domain IPR029016 GAF-like domain superfamily IPR009057 Homeobox-like domain superfamily IPR002197 DNA binding HTH domain, Fis-type IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR000014 PAS domain IPR035965 PAS domain superfamily IPR013767 PAS fold IPR002078 RNA polymerase sigma factor 54 interaction domain IPR025662 Sigma-54 interaction domain, ATP-binding site 1 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 IPR007761 Mannitol repressor MtlR-like IPR038026 MtlR-like superfamily IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily IPR013328 6-phosphogluconate dehydrogenase, domain 2 IPR023028 Mannitol-1-phosphate 5-dehydrogenase IPR000669 Mannitol dehydrogenase IPR013118 Mannitol dehydrogenase, C-terminal IPR023027 Mannitol dehydrogenase, conserved site IPR013131 Mannitol dehydrogenase, N-terminal IPR036291 NAD(P)-binding domain superfamily IPR016152 Phosphotransferase/anion transporter IPR002178 PTS EIIA type-2 domain IPR036095 PTS system IIB component-like superfamily IPR013011 Phosphotransferase system, EIIB component, type 2 IPR003501 Phosphotransferase system, EIIB component, type 2/3 IPR029503 Phosphotransferase system EIIB component, mannitol-specific IPR003352 Phosphotransferase system, EIIC IPR013014 Phosphotransferase system, EIIC component, type 2 IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC IPR009057 Homeobox-like domain superfamily IPR018060 DNA binding HTH domain, AraC-type IPR018062 HTH domain AraC-type, conserved site IPR020449 Transcription regulator HTH, AraC- type IPR004872 Lipoprotein NlpA family IPR004872 Lipoprotein NlpA family IPR037404 HTH-type transcriptional activator IlvY, PBP2 domain IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR000055 Restriction endonuclease, type I, HsdS IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily IPR003356 DNA methylase, adenine-specific IPR002052 DNA methylase, N-6 adenine-specific, conserved site IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR000271 Ribosomal protein L34 IPR020939 Ribosomal protein L34, conserved site IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily IPR013328 6-phosphogluconate dehydrogenase, domain 2 IPR013023 Ketol-acid reductoisomerase IPR000506 Ketol-acid reductoisomerase, C-terminal IPR013116 Ketol-acid reductoisomerase, N-terminal IPR036291 NAD(P)-binding domain superfamily IPR002941 DNA methylase N-4/N-6 IPR002052 DNA methylase, N-6 adenine-specific, conserved site IPR001091 Restriction/modification DNA-methylase IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR013670 EcoEI R protein C-terminal domain IPR006935 Helicase/UvrB, N-terminal IPR014001 Helicase superfamily 1/2, ATP-binding domain IPR001650 Helicase, C-terminal IPR029464 Type I restriction enzyme R protein, N-terminal domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR007475 Ubiquinone biosynthesis accessory factor UbiK IPR012893 HipA-like, C-terminal IPR017508 HipA, N-terminal subdomain 1 IPR014284 RNA polymerase sigma-70 like domain IPR000943 RNA polymerase sigma-70 IPR009042 RNA polymerase sigma-70 region 1.2 IPR007627 RNA polymerase sigma-70 region 2 IPR007624 RNA polymerase sigma-70 region 3 IPR007630 RNA polymerase sigma-70 region 4 IPR007631 RNA polymerase sigma factor 70, non-essential domain IPR007127 RNA polymerase sigma factor 70, region 1.1 IPR042189 Sigma-70 factor, region 1.1 superfamily IPR013325 RNA polymerase sigma factor, region 2 IPR013324 RNA polymerase sigma factor, region 3/4-like IPR012760 RNA polymerase sigma factor RpoD, C-terminal IPR028630 RNA polymerase sigma factor RpoD IPR036388 Winged helix-like DNA-binding domain superfamily IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal IPR013264 DNA primase, catalytic core, N-terminal IPR037068 DNA primase, catalytic core, N-terminal domain superfamily IPR019475 DNA primase, DnaB-helicase binding domain IPR006295 DNA primase, DnaG IPR013173 DNA primase DnaG, DnaB-binding domain IPR036977 DNA Primase, CHC2-type zinc finger IPR030846 DNA primase DnaG, bacteria IPR034151 Bacterial DnaG primase, TOPRIM domain IPR006171 TOPRIM domain IPR002694 Zinc finger, CHC2-type IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 2 IPR019004 Uncharacterised protein YqeY/Aim41 IPR042184 YqeY/Aim41, N-terminal domain IPR001911 Ribosomal protein S21 IPR018278 Ribosomal protein S21, conserved site IPR038380 Ribosomal protein S21 superfamily IPR000905 Gcp-like domain IPR017861 Kae1/TsaD family IPR017860 Peptidase M22, conserved site IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD IPR029058 Alpha/Beta hydrolase fold IPR000073 Alpha/beta hydrolase fold-1 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY IPR006156 Dihydroneopterin aldolase IPR006157 Dihydroneopterin aldolase/epimerase domain IPR003824 Undecaprenyl-diphosphatase UppP IPR012006 tRNA nucleotidyltransferase, proteobacteria IPR003607 HD/PDEase domain IPR006674 HD domain IPR002646 Poly A polymerase, head domain IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain IPR003646 SH3-like domain, bacterial-type IPR016476 SH3 domain protein IPR001204 Phosphate transporter IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains IPR001036 Acriflavin resistance protein IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains IPR001036 Acriflavin resistance protein IPR002727 Protein of unknown function DUF47 IPR038078 PhoU-like domain superfamily IPR018445 Putative phosphate transport regulator IPR007899 CHAD domain IPR033469 CYTH-like domain superfamily IPR023577 CYTH domain IPR039013 Inorganic triphosphatase YgiF IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase IPR023030 Bifunctional protein HldE IPR002173 Carbohydrate/puine kinase, PfkB, conserved site IPR004821 Cytidyltransferase-like domain IPR011611 Carbohydrate kinase PfkB IPR011913 RfaE bifunctional protein, domain I IPR011914 RfaE bifunctional protein, domain II IPR029056 Ribokinase-like IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR003423 Outer membrane efflux protein IPR010130 Type I secretion outer membrane protein, TolC IPR004385 Nucleoside diphosphate pyrophosphatase IPR015797 NUDIX hydrolase-like domain superfamily IPR020084 NUDIX hydrolase, conserved site IPR000086 NUDIX hydrolase domain IPR009659 Protein of unknown function DUF1249 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA IPR029052 Metallo-dependent phosphatase-like IPR029058 Alpha/Beta hydrolase fold IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA IPR002288 DNA gyrase B subunit, C-terminal IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR020568 Ribosomal protein S5 domain 2-type fold IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup IPR001241 DNA topoisomerase, type IIA IPR013760 DNA topoisomerase, type IIA-like domain superfamily IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 IPR018522 DNA topoisomerase, type IIA, conserved site IPR005737 DNA topoisomerase IV, subunit B, Gram-negative IPR006171 TOPRIM domain IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal IPR013760 DNA topoisomerase, type IIA-like domain superfamily IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily IPR005742 DNA topoisomerase IV, subunit A, Gram-negative IPR001478 PDZ domain IPR036034 PDZ superfamily IPR011783 Peptidase S1C, DegS IPR009003 Peptidase S1, PA clan IPR001940 Peptidase S1C IPR001478 PDZ domain IPR036034 PDZ superfamily IPR011782 Peptidase S1C, Do IPR009003 Peptidase S1, PA clan IPR001940 Peptidase S1C IPR009386 Protein of unknown function DUF1043 IPR005654 ATPase, AFG1-like IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR030870 Cell division protein ZapE IPR005822 Ribosomal protein L13 IPR005823 Ribosomal protein L13, bacterial-type IPR023563 Ribosomal protein L13, conserved site IPR036899 Ribosomal protein L13 superfamily IPR020568 Ribosomal protein S5 domain 2-type fold IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup IPR000754 Ribosomal protein S9 IPR023035 Ribosomal protein S9, bacterial/plastid IPR020574 Ribosomal protein S9, conserved site IPR017941 Rieske [2Fe-2S] iron-sulphur domain IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily IPR014349 Rieske iron-sulphur protein IPR005805 Rieske iron-sulphur protein, C-terminal IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit IPR005798 Cytochrome b/b6, C-terminal IPR036150 Cytochrome b/b6, C-terminal domain superfamily IPR005797 Cytochrome b/b6, N-terminal IPR027387 Cytochrome b/b6-like domain superfamily IPR030689 Cytochrome b IPR016174 Di-haem cytochrome, transmembrane IPR009056 Cytochrome c-like domain IPR036909 Cytochrome c-like domain superfamily IPR002326 Cytochrome c1 IPR010987 Glutathione S-transferase, C-terminal-like IPR036282 Glutathione S-transferase, C-terminal domain superfamily IPR040079 Glutathione Transferase family IPR004045 Glutathione S-transferase, N-terminal IPR004046 Glutathione S-transferase, C-terminal IPR034341 Stringent starvation protein A, N-terminal IPR036249 Thioredoxin-like superfamily IPR010987 Glutathione S-transferase, C-terminal-like IPR036282 Glutathione S-transferase, C-terminal domain superfamily IPR040079 Glutathione Transferase family IPR004045 Glutathione S-transferase, N-terminal IPR004046 Glutathione S-transferase, C-terminal IPR034341 Stringent starvation protein A, N-terminal IPR036249 Thioredoxin-like superfamily IPR007481 Stringent starvation protein B IPR036760 SspB-like superfamily IPR007055 BON domain IPR014004 Transport-associated and nodulation domain, bacteria IPR023070 DnaA initiator-associating protein IPR035461 GmhA/DiaA IPR001347 Sugar isomerase (SIS) IPR011335 Restriction endonuclease type II-like IPR011856 tRNA endonuclease-like domain superfamily IPR003509 Uncharacterised protein family UPF0102 IPR013986 DExx box DNA helicase domain superfamily IPR014017 UvrD-like DNA helicase, C-terminal IPR000212 DNA helicase, UvrD/REP type IPR005752 ATP-dependent DNA helicase Rep IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR014016 UvrD-like helicase, ATP-binding domain IPR034739 UvrD/AddA helicase, N-terminal IPR007443 Penicillin-binding protein activator LpoA IPR028082 Periplasmic binding protein-like I IPR011990 Tetratricopeptide-like helical domain superfamily IPR000878 Tetrapyrrole methylase IPR035996 Tetrapyrrole methylase superfamily IPR014777 Tetrapyrrole methylase, subdomain 1 IPR014776 Tetrapyrrole methylase, subdomain 2 IPR008189 rRNA small subunit methyltransferase I IPR018063 SAM-dependent methyltransferase RsmI, conserved site IPR002903 Ribosomal RNA small subunit methyltransferase H IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR011922 Cell division protein FtsL IPR012338 Beta-lactamase/transpeptidase-like IPR037532 Peptidoglycan D,D-transpeptidase FtsI IPR005311 Penicillin-binding protein, dimerisation domain IPR036138 Penicillin-binding protein, dimerisation domain superfamily IPR001460 Penicillin-binding protein, transpeptidase IPR036565 Mur-like, catalytic domain superfamily IPR004101 Mur ligase, C-terminal IPR036615 Mur ligase, C-terminal domain superfamily IPR013221 Mur ligase, central IPR000713 Mur ligase, N-terminal catalytic domain IPR035911 MurE/MurF, N-terminal IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase IPR036565 Mur-like, catalytic domain superfamily IPR004101 Mur ligase, C-terminal IPR036615 Mur ligase, C-terminal domain superfamily IPR013221 Mur ligase, central IPR000713 Mur ligase, N-terminal catalytic domain IPR035911 MurE/MurF, N-terminal IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase IPR000715 Glycosyl transferase, family 4 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site IPR036565 Mur-like, catalytic domain superfamily IPR004101 Mur ligase, C-terminal IPR036615 Mur ligase, C-terminal domain superfamily IPR013221 Mur ligase, central IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase IPR009056 Cytochrome c-like domain IPR036909 Cytochrome c-like domain superfamily IPR002323 Cytochrome c, class IE IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site IPR013437 Probable peptidoglycan glycosyltransferase FtsW IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA IPR006009 N-acetylglucosaminyltransferase, MurG IPR007235 Glycosyl transferase, family 28, C-terminal IPR004276 Glycosyltransferase family 28, N-terminal domain IPR036565 Mur-like, catalytic domain superfamily IPR004101 Mur ligase, C-terminal IPR036615 Mur ligase, C-terminal domain superfamily IPR013221 Mur ligase, central IPR000713 Mur ligase, N-terminal catalytic domain IPR005758 UDP-N-acetylmuramate--L-alanine ligase IPR005548 Cell division protein FtsQ/DivIB IPR026579 Cell division protein FtsQ IPR034746 POTRA domain IPR013685 POTRA domain, FtsQ-type IPR020823 Cell division protein FtsA IPR003494 SHS2 domain inserted in FtsA IPR000158 Cell division protein FtsZ IPR020805 Cell division protein FtsZ, conserved site IPR024757 Cell division protein FtsZ, C-terminal IPR008280 Tubulin/FtsZ, C-terminal IPR018316 Tubulin/FtsZ, 2-layer sandwich domain IPR036525 Tubulin/FtsZ, GTPase domain superfamily IPR003008 Tubulin/FtsZ, GTPase domain IPR020568 Ribosomal protein S5 domain 2-type fold IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR004027 SEC-C motif IPR000185 Protein translocase subunit SecA IPR020937 SecA conserved site IPR011115 SecA DEAD-like, N-terminal IPR014018 SecA motor DEAD IPR011130 SecA, preprotein cross-linking domain IPR011116 SecA Wing/Scaffold IPR036266 SecA, Wing/Scaffold superfamily IPR036670 SecA, preprotein cross-linking domain superfamily IPR003561 Mutator MutT IPR020476 NUDIX hydrolase IPR015797 NUDIX hydrolase-like domain superfamily IPR020084 NUDIX hydrolase, conserved site IPR000086 NUDIX hydrolase domain IPR022663 Dihydrodipicolinate reductase, C-terminal IPR000846 Dihydrodipicolinate reductase, N-terminal IPR022664 Dihydrodipicolinate reductase, conserved site IPR023940 Dihydrodipicolinate reductase IPR036291 NAD(P)-binding domain superfamily IPR006274 Carbamoyl-phosphate synthase, small subunit IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily IPR029062 Class I glutamine amidotransferase-like IPR035686 Carbamoyl-phosphate synthase small subunit, GATase1 domain IPR017926 Glutamine amidotransferase IPR011761 ATP-grasp fold IPR006275 Carbamoyl-phosphate synthase, large subunit IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain IPR011607 Methylglyoxal synthase-like domain IPR036914 Methylglyoxal synthase-like domain superfamily IPR033937 Carbamoyl-phosphate synthase large chain, methylglyoxal synthase-like domain IPR016185 Pre-ATP-grasp domain superfamily IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR005115 Uncharacterised domain UPF0126 IPR002491 ABC transporter periplasmic binding domain IPR023544 ABC transporter, vitamin B12-binding protein IPR031347 Protein AmpE IPR004485 Cobalamin biosynthesis CobD/CbiB IPR010049 MTA/SAH nucleosidase IPR000845 Nucleoside phosphorylase domain IPR035994 Nucleoside phosphorylase superfamily IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain IPR028261 Dihydroprymidine dehydrogenase domain II IPR036188 FAD/NAD(P)-binding domain superfamily IPR023753 FAD/NAD(P)-binding domain IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 IPR009051 Alpha-helical ferredoxin IPR013785 Aldolase-type TIM barrel IPR017932 Glutamine amidotransferase type 2 domain IPR002489 Glutamate synthase, alpha subunit, C-terminal IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily IPR006982 Glutamate synthase, central-N IPR002932 Glutamate synthase domain IPR029055 Nucleophile aminohydrolases, N-terminal IPR028261 Dihydroprymidine dehydrogenase domain II IPR036188 FAD/NAD(P)-binding domain superfamily IPR023753 FAD/NAD(P)-binding domain IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 IPR009051 Alpha-helical ferredoxin IPR013785 Aldolase-type TIM barrel IPR017932 Glutamine amidotransferase type 2 domain IPR002489 Glutamate synthase, alpha subunit, C-terminal IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily IPR006982 Glutamate synthase, central-N IPR002932 Glutamate synthase domain IPR029055 Nucleophile aminohydrolases, N-terminal IPR039661 ELP3/YhcC IPR006638 Elp3/MiaB/NifB IPR032432 Radical SAM, C-terminal extension IPR007197 Radical SAM IPR023404 Radical SAM, alpha/beta horseshoe IPR005911 Protein YhcC-like IPR027460 Aerobic respiration control sensor protein ArcB, transmembrane domain superfamily IPR011006 CheY-like superfamily IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR040642 Histidine kinase receptor ArcB, transmembrane domain IPR036641 HPT domain superfamily IPR000014 PAS domain IPR000700 PAS-associated, C-terminal IPR035965 PAS domain superfamily IPR013767 PAS fold IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain IPR014409 Signal transduction histidine kinase, hybrid-type, aerobic respiration control ArcB IPR001789 Signal transduction response regulator, receiver domain IPR003593 AAA+ ATPase domain IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR011006 CheY-like superfamily IPR001867 OmpR/PhoB-type DNA-binding domain IPR016032 Signal transduction response regulator, C-terminal effector IPR001789 Signal transduction response regulator, receiver domain IPR039420 Transcriptional regulatory protein WalR-like IPR036388 Winged helix-like DNA-binding domain superfamily IPR010203 Regulator of ribonuclease activity A IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily IPR036393 Acetylglutamate kinase-like superfamily IPR002912 ACT domain IPR041743 Bifunctional aspartokinase/homoserine dehydrogenase, N-terminal catalytic domain IPR001048 Aspartate/glutamate/uridylate kinase IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding IPR001341 Aspartate kinase IPR018042 Aspartate kinase, conserved site IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I IPR027795 CASTOR, ACT domain IPR001342 Homoserine dehydrogenase, catalytic IPR019811 Homoserine dehydrogenase, conserved site IPR036291 NAD(P)-binding domain superfamily IPR013750 GHMP kinase, C-terminal domain IPR036554 GHMP kinase, C-terminal domain superfamily IPR006204 GHMP kinase N-terminal domain IPR006203 GHMP kinase, ATP-binding, conserved site IPR000870 Homoserine kinase IPR020568 Ribosomal protein S5 domain 2-type fold IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup IPR001926 Pyridoxal-phosphate dependent enzyme IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site IPR029144 Threonine synthase, N-terminal IPR037158 Threonine synthase, N-terminal domain superfamily IPR004450 Threonine synthase-like IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme IPR019777 Formate C-acetyltransferase glycine radical, conserved site IPR001150 Glycine radical domain IPR011140 Autonomous glycyl radical cofactor GrcA IPR001719 AP endonuclease 2 IPR018246 AP endonuclease 2, zinc binding site IPR036237 Xylose isomerase-like superfamily IPR013022 Xylose isomerase-like, TIM barrel domain IPR002043 Uracil-DNA glycosylase family 1 IPR018085 Uracil-DNA glycosylase, active site IPR005122 Uracil-DNA glycosylase-like IPR036895 Uracil-DNA glycosylase-like domain superfamily IPR001463 Sodium:alanine symporter IPR005583 Peroxide stress protein YaaA IPR011545 DEAD/DEAH box helicase domain IPR028621 ATP-dependent RNA helicase SrmB IPR014001 Helicase superfamily 1/2, ATP-binding domain IPR001650 Helicase, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site IPR014014 RNA helicase, DEAD-box type, Q motif IPR011545 DEAD/DEAH box helicase domain IPR028621 ATP-dependent RNA helicase SrmB IPR014001 Helicase superfamily 1/2, ATP-binding domain IPR001650 Helicase, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site IPR014014 RNA helicase, DEAD-box type, Q motif IPR002052 DNA methylase, N-6 adenine-specific, conserved site IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR007848 Methyltransferase small domain IPR022882 tRNA1(Val) (adenine(37)-N6)-methyltransferase IPR004685 Branched-chain amino acid transport system II carrier protein IPR008254 Flavodoxin/nitric oxide synthase IPR001226 Flavodoxin, conserved site IPR010086 Flavodoxin, long chain IPR029039 Flavoprotein-like superfamily IPR011010 DNA breaking-rejoining enzyme, catalytic core IPR013762 Integrase-like, catalytic domain superfamily IPR002104 Integrase, catalytic domain IPR010998 Integrase/recombinase, N-terminal IPR004107 Integrase, SAM-like, N-terminal IPR011932 Tyrosine recombinase XerD IPR023009 Tyrosine recombinase XerC/XerD IPR033954 Disulphide bond isomerase, DsbC/G IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily IPR012336 Thioredoxin-like fold IPR036249 Thioredoxin-like superfamily IPR017937 Thioredoxin, conserved site IPR013766 Thioredoxin domain IPR001667 DDH domain IPR038763 DHH phosphoesterase superfamily IPR003156 DHHA1 domain IPR004610 Bacterial RecJ exonuclease IPR041122 RecJ, OB domain IPR005139 Peptide chain release factor IPR000352 Peptide chain release factor class I IPR004374 Peptide chain release factor 2 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) IPR006195 Aminoacyl-tRNA synthetase, class II IPR002313 Lysine-tRNA ligase, class II IPR018149 Lysyl-tRNA synthetase, class II, C-terminal IPR012340 Nucleic acid-binding, OB-fold IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type IPR003593 AAA+ ATPase domain IPR011006 CheY-like superfamily IPR009057 Homeobox-like domain superfamily IPR002197 DNA binding HTH domain, Fis-type IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR001789 Signal transduction response regulator, receiver domain IPR002078 RNA polymerase sigma factor 54 interaction domain IPR025662 Sigma-54 interaction domain, ATP-binding site 1 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 IPR025944 Sigma-54 interaction domain, conserved site IPR020471 Aldo/keto reductase IPR023210 NADP-dependent oxidoreductase domain IPR036812 NADP-dependent oxidoreductase domain superfamily IPR004230 DNA mismatch repair protein MutH IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II IPR037057 DNA mismatch repair MutH/Restriction endonuclease, type II superfamily IPR011335 Restriction endonuclease type II-like IPR020476 NUDIX hydrolase IPR015797 NUDIX hydrolase-like domain superfamily IPR020084 NUDIX hydrolase, conserved site IPR000086 NUDIX hydrolase domain IPR022927 RNA pyrophosphohydrolase RppH IPR003018 GAF domain IPR029016 GAF-like domain superfamily IPR008279 PEP-utilising enzyme, mobile domain IPR018274 PEP-utilising enzyme, active site IPR000121 PEP-utilising enzyme, C-terminal IPR023151 PEP-utilising enzyme, conserved site IPR036637 Phosphohistidine domain superfamily IPR006318 Phosphotransferase system, enzyme I-like IPR008731 Phosphotransferase system, enzyme I N-terminal IPR036618 PtsI, HPr-binding domain superfamily IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily IPR040442 Pyruvate kinase-like domain superfamily IPR002781 Transmembrane protein TauE-like IPR001640 Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase Lgt IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily IPR000398 Thymidylate synthase IPR020940 Thymidylate synthase, active site IPR003841 Sodium-dependent phosphate transport protein IPR004633 Na/Pi-cotransporter II-related/YqeW-like protein IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR036412 HAD-like superfamily IPR006439 HAD hydrolase, subfamily IA IPR006549 HAD-superfamily hydrolase,subfamily IIIA IPR041492 Haloacid dehalogenase-like hydrolase IPR023214 HAD superfamily IPR023198 Phosphoglycolate phosphatase-like, domain 2 IPR023733 Pyrophosphatase PpaX IPR011991 ArsR-like helix-turn-helix domain IPR001845 HTH ArsR-type DNA-binding domain IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR002583 Ribosomal protein S20 IPR036510 Ribosomal protein S20 superfamily IPR004268 Peptidoglycan biosynthesis protein MurJ IPR015864 FAD synthetase IPR023468 Riboflavin kinase IPR002606 Riboflavin kinase, bacterial IPR015865 Riboflavin kinase domain, bacterial/eukaryotic IPR023465 Riboflavin kinase domain superfamily IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site IPR002300 Aminoacyl-tRNA synthetase, class Ia IPR033708 Isoleucyl tRNA synthetase type 1, anticodon-binding domain IPR002301 Isoleucine-tRNA ligase IPR023585 Isoleucine-tRNA ligase, type 1 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain IPR010663 Zinc finger, FPG/IleRS-type IPR001872 Peptidase A8, signal peptidase II IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase IPR011006 CheY-like superfamily IPR007492 LytTR DNA-binding domain IPR001789 Signal transduction response regulator, receiver domain IPR003018 GAF domain IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR010559 Signal transduction histidine kinase, internal region IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region IPR003706 CstA, N-terminal domain IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ IPR005486 Glucokinase regulatory protein, conserved site IPR040190 N-acetylmuramic acid 6-phosphate etherase/glucokinase regulatory protein IPR001347 Sugar isomerase (SIS) IPR005338 Anhydro-N-acetylmuramic acid kinase IPR022956 Beta-hexosaminidase, bacterial IPR019800 Glycoside hydrolase, family 3, active site IPR001764 Glycoside hydrolase, family 3, N-terminal IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily IPR017853 Glycoside hydrolase superfamily IPR013785 Aldolase-type TIM barrel IPR006218 DAHP synthetase I/KDSA IPR006219 DHAP synthase, class 1 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily IPR008244 Bifunctional chorismate mutase/prephenate dehydrogenase T-protein IPR036263 Chorismate mutase type II superfamily IPR036979 Chorismate mutase domain superfamily IPR002701 Chorismate mutase II, prokaryotic-type IPR011277 Chorismate mutase, T-protein IPR036291 NAD(P)-binding domain superfamily IPR003099 Prephenate dehydrogenase IPR011055 Duplicated hybrid motif IPR007340 Opacity-associated protein A IPR016047 Peptidase M23 IPR011055 Duplicated hybrid motif IPR007340 Opacity-associated protein A IPR016047 Peptidase M23 IPR027021 Cyclic di-GMP binding protein, PA4608 type IPR009875 PilZ domain IPR003593 AAA+ ATPase domain IPR032781 ABC-transporter extension domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR022374 Energy-dependent translational throttle protein EttA IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR023346 Lysozyme-like domain superfamily IPR037061 Lytic transglycosylase, superhelical linker domain superfamily IPR012289 Lytic transglycosylase, superhelical linker IPR008939 Lytic transglycosylase, superhelical U-shaped IPR000189 Prokaryotic transglycosylase, active site IPR008258 Transglycosylase SLT domain 1 IPR000831 Trp repressor IPR013335 Trp repressor, bacterial IPR010921 Trp repressor/replication initiator IPR038116 TrpR-like superfamily IPR029001 Inosine triphosphate pyrophosphatase-like IPR002786 Inosine/xanthosine triphosphatase IPR026533 Non-canonical purine NTP phosphatase/PRRC1 IPR002912 ACT domain IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase IPR036263 Chorismate mutase type II superfamily IPR036979 Chorismate mutase domain superfamily IPR002701 Chorismate mutase II, prokaryotic-type IPR010952 Chorismate mutase, gammaproteobacteria IPR001086 Prephenate dehydratase IPR018528 Prephenate dehydratase, conserved site IPR036567 Ribosome hibernation promotion factor-like IPR003489 Ribosome hibernation promoting factor/RaiA IPR023346 Lysozyme-like domain superfamily IPR023703 Membrane-bound lytic murein transglycosylase F IPR001638 Solute-binding protein family 3/N-terminal domain of MltF IPR000189 Prokaryotic transglycosylase, active site IPR008258 Transglycosylase SLT domain 1 IPR017689 Outer membrane protein assembly factor BamD IPR039565 Outer membrane lipoprotein BamD-like IPR011990 Tetratricopeptide-like helical domain superfamily IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR020103 Pseudouridine synthase, catalytic domain superfamily IPR006225 Pseudouridine synthase, RluC/RluD IPR006224 Pseudouridine synthase, RluC/RluD, conserved site IPR006145 Pseudouridine synthase, RsuA/RluA IPR002942 RNA-binding S4 domain IPR036986 RNA-binding S4 domain superfamily IPR003730 Multi-copper polyphenol oxidoreductase IPR038371 Multi-copper polyphenol oxidoreductase superfamily IPR011324 Cytotoxic necrotizing factor-like, catalytic IPR003593 AAA+ ATPase domain IPR003959 ATPase, AAA-type, core IPR017730 Chaperonin ClpB IPR019489 Clp ATPase, C-terminal IPR036628 Clp, N-terminal domain superfamily IPR004176 Clp, N-terminal IPR001270 ClpA/B family IPR018368 ClpA/B, conserved site 1 IPR028299 ClpA/B, conserved site 2 IPR041546 ClpA/ClpB, AAA lid domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR030678 Peptide/nickel binding protein, MppA-type IPR039424 Solute-binding protein family 5 IPR023765 Solute-binding protein family 5, conserved site IPR000914 Solute-binding protein family 5 domain IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site IPR001539 Peptidase U32 IPR032525 Peptidase family U32, C-terminal IPR007476 Putative exonuclease, RdgC IPR011006 CheY-like superfamily IPR001867 OmpR/PhoB-type DNA-binding domain IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB IPR001789 Signal transduction response regulator, receiver domain IPR039420 Transcriptional regulatory protein WalR-like IPR036388 Winged helix-like DNA-binding domain superfamily IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR000014 PAS domain IPR035965 PAS domain superfamily IPR013767 PAS fold IPR021766 Phosphate regulon sensor protein PhoR IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR IPR024370 PBP domain IPR011862 Phosphate binding protein IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR022371 Exopolyphosphatase IPR003695 Ppx/GppA phosphatase IPR030673 Pyrophosphatase, GppA/Ppx-type IPR001736 Phospholipase D/Transphosphatidylase IPR003414 Polyphosphate kinase IPR041108 Polyphosphate kinase, C-terminal domain 1 IPR024953 Polyphosphate kinase middle domain IPR036830 Polyphosphate kinase middle domain superfamily IPR025200 Polyphosphate kinase C-terminal domain 2 IPR025198 Polyphosphate kinase N-terminal domain IPR036832 Polyphosphate kinase N-terminal domain superfamily IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR011864 Phosphate ABC transporter, permease protein PstC IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR005672 Phosphate transport system permease protein PstA IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR015850 ABC transporter, phosphate import, PstB IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR005670 Phosphate transport system permease protein 1 IPR028366 Phosphate transport system protein PhoU IPR038078 PhoU-like domain superfamily IPR026022 PhoU domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR016898 Polyphosphate kinase 2 IPR022488 Polyphosphate kinase-2-related IPR022486 Polyphosphate kinase 2, PA0141 IPR005627 Copper homeostasis protein CutC IPR023648 Copper homeostasis CutC domain IPR036822 Copper homeostasis (CutC) domain superfamily IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant IPR024706 Peroxiredoxin, AhpC-type IPR019479 Peroxiredoxin, C-terminal IPR036249 Thioredoxin-like superfamily IPR013766 Thioredoxin domain IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR025966 Oligopeptide transport permease C-like, N-terminal domain IPR011076 Malate synthase-like superfamily IPR006252 Malate synthase A IPR001465 Malate synthase IPR019830 Malate synthase, conserved site IPR039556 ICL/PEPM domain IPR006254 Isocitrate lyase IPR018523 Isocitrate lyase/phosphorylmutase, conserved site IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily IPR040442 Pyruvate kinase-like domain superfamily IPR000644 CBS domain IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA IPR042118 QueA, domain 1 IPR042119 QueA, domain 2 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily IPR004803 tRNA-guanine transglycosylase IPR036511 Queuine tRNA-ribosyltransferase-like IPR002616 tRNA-guanine(15) transglycosylase-like IPR003849 Preprotein translocase YajC IPR001036 Acriflavin resistance protein IPR005791 Protein translocase subunit SecD IPR027398 SecD export protein N-terminal TM domain IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial IPR022645 Protein-export membrane protein SecD/SecF, bacterial IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site IPR001036 Acriflavin resistance protein IPR005791 Protein translocase subunit SecD IPR027398 SecD export protein N-terminal TM domain IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial IPR022645 Protein-export membrane protein SecD/SecF, bacterial IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial IPR022645 Protein-export membrane protein SecD/SecF, bacterial IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site IPR005665 Protein-export membrane protein SecF, bacterial IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial IPR022645 Protein-export membrane protein SecD/SecF, bacterial IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site IPR005665 Protein-export membrane protein SecF, bacterial IPR033942 Inositol monophosphatase IPR020583 Inositol monophosphatase, metal-binding site IPR000760 Inositol monophosphatase-like IPR020550 Inositol monophosphatase, conserved site IPR022337 Inositol monophosphatase, SuhB IPR029028 Alpha/beta knot methyltransferases IPR004384 RNA methyltransferase TrmJ/LasT IPR001537 tRNA/rRNA methyltransferase, SpoU type IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal IPR010242 Transcription factor HTH, IscR IPR030489 Transcription regulator Rrf2-type, conserved site IPR000944 Transcription regulator Rrf2-type IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR000192 Aminotransferase class V domain IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site IPR010240 Cysteine desulfurase IscS IPR016454 Cysteine desulfurase IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR011339 ISC system FeS cluster assembly, IscU scaffold IPR002871 NIF system FeS cluster assembly, NifU, N-terminal IPR000361 FeS cluster biogenesis IPR016092 FeS cluster insertion protein IPR017870 FeS cluster insertion, C-terminal, conserved site IPR035903 HesB-like domain superfamily IPR011302 Iron-binding protein IscA, proteobacteria IPR001623 DnaJ domain IPR004640 Co-chaperone Hsc20 IPR036386 HscB, C-terminal domain superfamily IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain IPR036869 Chaperone J-domain superfamily IPR018181 Heat shock protein 70, conserved site IPR042039 HscA chaperone, nucleotide-binding domain IPR029048 Heat shock protein 70kD, C-terminal domain superfamily IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily IPR013126 Heat shock protein 70 family IPR010236 ISC system FeS cluster assembly, HscA chaperone IPR036010 2Fe-2S ferredoxin-like superfamily IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain IPR001055 Adrenodoxin IPR018298 Adrenodoxin, iron-sulphur binding site IPR012675 Beta-grasp domain superfamily IPR011536 Ferredoxin 2Fe-2S type, proteobacteria IPR007479 ISC system FeS cluster assembly, IscX IPR036762 IscX-like superfamily IPR001346 Interferon regulatory factor DNA-binding domain IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B IPR008330 Peptidase M17, peptidase B IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal IPR034907 Nucleoside diphosphate kinase-like domain IPR036850 Nucleoside diphosphate kinase-like domain superfamily IPR001564 Nucleoside diphosphate kinase IPR023005 Nucleoside diphosphate kinase, active site IPR013785 Aldolase-type TIM barrel IPR040072 Methyltransferase (Class A) IPR027492 Dual-specificity RNA methyltransferase RlmN IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr IPR007197 Radical SAM IPR001387 Cro/C1-type helix-turn-helix domain IPR025194 Domain of unknown function DUF4115 IPR010982 Lambda repressor-like, DNA-binding domain superfamily IPR023690 Cytoskeleton protein RodZ IPR011005 Dihydropteroate synthase-like IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type IPR006195 Aminoacyl-tRNA synthetase, class II IPR004154 Anticodon-binding IPR036621 Anticodon-binding domain superfamily IPR015807 Histidine-tRNA ligase IPR041715 Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit IPR033656 Histidyl-anticodon-binding IPR011990 Tetratricopeptide-like helical domain superfamily IPR018704 Tetratricopeptide repeat-like domain IPR026039 Uncharacterised protein family UPF0070 IPR017687 Outer membrane protein assembly factor BamB IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat IPR002372 Pyrrolo-quinoline quinone repeat IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily IPR015943 WD40/YVTN repeat-like-containing domain superfamily IPR003593 AAA+ ATPase domain IPR031166 EngA-type guanine nucleotide-binding (G) domain IPR016484 GTP-binding protein EngA IPR006073 GTP binding domain IPR032859 GTPase Der, C-terminal KH-domain-like IPR015946 K homology domain-like, alpha/beta IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR005225 Small GTP-binding protein domain IPR003753 Exonuclease VII, large subunit IPR020579 Exonuclease VII, large subunit, C-terminal IPR025824 OB-fold nucleic acid binding domain IPR013785 Aldolase-type TIM barrel IPR000644 CBS domain IPR005990 Inosine-5'-monophosphate dehydrogenase IPR015875 IMP dehydrogenase / GMP reductase, conserved site IPR001093 IMP dehydrogenase/GMP reductase IPR029062 Class I glutamine amidotransferase-like IPR017926 Glutamine amidotransferase IPR001674 GMP synthase, C-terminal IPR004739 GMP synthase, glutamine amidotransferase IPR022955 GMP synthase IPR025777 GMP synthetase ATP pyrophosphatase domain IPR022310 NAD/GMP synthase IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR003610 Carbohydrate-binding module family 5/12 IPR036573 Carbohydrate-binding module superfamily 5/12 IPR009470 Chitinase, C-terminal IPR011583 Chitinase II IPR029070 Chitinase insertion domain superfamily IPR001223 Glycoside hydrolase family 18, catalytic domain IPR017853 Glycoside hydrolase superfamily IPR013783 Immunoglobulin-like fold IPR003610 Carbohydrate-binding module family 5/12 IPR036573 Carbohydrate-binding module superfamily 5/12 IPR009470 Chitinase, C-terminal IPR011583 Chitinase II IPR029070 Chitinase insertion domain superfamily IPR001223 Glycoside hydrolase family 18, catalytic domain IPR017853 Glycoside hydrolase superfamily IPR013783 Immunoglobulin-like fold IPR000791 Acetate transporter GPR1/FUN34/SatP family IPR001463 Sodium:alanine symporter IPR023080 D-amino acid dehydrogenase DadA IPR006076 FAD dependent oxidoreductase IPR036188 FAD/NAD(P)-binding domain superfamily IPR013108 Amidohydrolase 3 IPR011059 Metal-dependent hydrolase, composite domain superfamily IPR032466 Metal-dependent hydrolase IPR033932 YtcJ like IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR005814 Aminotransferase class-III IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR016181 Acyl-CoA N-acyltransferase IPR003010 Carbon-nitrogen hydrolase IPR036526 Carbon-nitrogen hydrolase superfamily IPR000182 GNAT domain IPR001110 Uncharacterised protein family UPF0012, conserved site IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR009057 Homeobox-like domain superfamily IPR006118 Recombinase, conserved site IPR006119 Resolvase, N-terminal catalytic domain IPR036162 Resolvase-like, N-terminal catalytic domain superfamily IPR006120 Resolvase, HTH domain IPR009057 Homeobox-like domain superfamily IPR006118 Recombinase, conserved site IPR006119 Resolvase, N-terminal catalytic domain IPR036162 Resolvase-like, N-terminal catalytic domain superfamily IPR006120 Resolvase, HTH domain IPR012337 Ribonuclease H-like superfamily IPR002156 Ribonuclease H domain IPR036397 Ribonuclease H superfamily IPR022892 Ribonuclease HI IPR012337 Ribonuclease H-like superfamily IPR002156 Ribonuclease H domain IPR036397 Ribonuclease H superfamily IPR022892 Ribonuclease HI IPR023620 Small protein B IPR000037 SsrA-binding protein IPR020081 SsrA-binding protein, conserved site IPR005031 Coenzyme Q-binding protein COQ10, START domain IPR023393 START-like domain superfamily IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp IPR005346 RnfH protein IPR037021 RnfH superfamily IPR026592 Outer membrane protein assembly factor BamE IPR037873 BamE-like IPR007450 Lipoprotein SmpA/OmlA IPR004604 DNA recombination/repair protein RecN IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR003395 RecF/RecN/SMC, N-terminal IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal IPR017437 ATP-NAD kinase, PpnK-type, C-terminal IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily IPR002504 NAD kinase IPR000740 GrpE nucleotide exchange factor IPR013805 GrpE nucleotide exchange factor, coiled-coil IPR009012 GrpE nucleotide exchange factor, head IPR011009 Protein kinase-like domain superfamily IPR000719 Protein kinase domain IPR017441 Protein kinase, ATP binding site IPR008271 Serine/threonine-protein kinase, active site IPR023954 C4-dicarboxylate transport protein IPR001991 Sodium:dicarboxylate symporter IPR018107 Sodium:dicarboxylate symporter, conserved site IPR036458 Sodium:dicarboxylate symporter superfamily IPR012725 Chaperone DnaK IPR018181 Heat shock protein 70, conserved site IPR029048 Heat shock protein 70kD, C-terminal domain superfamily IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily IPR013126 Heat shock protein 70 family IPR012724 Chaperone DnaJ IPR002939 Chaperone DnaJ, C-terminal IPR001623 DnaJ domain IPR018253 DnaJ domain, conserved site IPR008971 HSP40/DnaJ peptide-binding IPR001305 Heat shock protein DnaJ, cysteine-rich domain IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily IPR036869 Chaperone J-domain superfamily IPR012902 Prokaryotic N-terminal methylation site IPR001082 Fimbrial protein pilin IPR000983 Bacterial general secretion pathway protein G-type pilin IPR012902 Prokaryotic N-terminal methylation site IPR001082 Fimbrial protein pilin IPR000843 LacI-type HTH domain IPR010982 Lambda repressor-like, DNA-binding domain superfamily IPR001761 Periplasmic binding protein/LacI sugar binding domain IPR028082 Periplasmic binding protein-like I IPR016192 APOBEC/CMP deaminase, zinc-binding IPR002125 Cytidine and deoxycytidylate deaminase domain IPR016193 Cytidine deaminase-like IPR028883 tRNA-specific adenosine deaminase IPR023346 Lysozyme-like domain superfamily IPR023703 Membrane-bound lytic murein transglycosylase F IPR001638 Solute-binding protein family 3/N-terminal domain of MltF IPR000189 Prokaryotic transglycosylase, active site IPR008258 Transglycosylase SLT domain 1 IPR029062 Class I glutamine amidotransferase-like IPR040707 Phosphoribosylformylglycinamidine synthase, N-terminal IPR017926 Glutamine amidotransferase IPR010073 Phosphoribosylformylglycinamidine synthase PurL IPR041609 Phosphoribosylformylglycinamidine synthase, linker domain IPR010918 PurM-like, C-terminal domain IPR036676 PurM-like, C-terminal domain superfamily IPR036921 PurM-like, N-terminal domain superfamily IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily IPR002933 Peptidase M20 IPR011650 Peptidase M20, dimerisation domain IPR001160 Peptidase M20C, Xaa-His dipeptidase IPR026033 Azaguanine-like transporters IPR006043 Xanthine/uracil/vitamin C permease IPR000836 Phosphoribosyltransferase domain IPR029057 Phosphoribosyltransferase-like IPR023747 Xanthine-guanine phosphoribosyltransferase IPR029058 Alpha/Beta hydrolase fold IPR010520 UPF0255 family IPR009986 Sigma factor-binding transcriptional regulator Crl IPR038208 Sigma factor-binding protein Crl superfamily IPR036393 Acetylglutamate kinase-like superfamily IPR001048 Aspartate/glutamate/uridylate kinase IPR041739 Glutamate-5-kinase domain IPR001057 Glutamate/acetylglutamate kinase IPR011529 Glutamate 5-kinase IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase IPR019797 Glutamate 5-kinase, conserved site IPR002478 PUA domain IPR015947 PUA-like superfamily IPR036974 PUA domain superfamily IPR016161 Aldehyde/histidinol dehydrogenase IPR016163 Aldehyde dehydrogenase, C-terminal IPR016162 Aldehyde dehydrogenase, N-terminal IPR015590 Aldehyde dehydrogenase domain IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site IPR012134 Glutamate-5-semialdehyde dehydrogenase IPR000965 GPR domain IPR005144 ATP-cone domain IPR003796 Ribonucleotide reductase regulator NrdR-like IPR016192 APOBEC/CMP deaminase, zinc-binding IPR002125 Cytidine and deoxycytidylate deaminase domain IPR016193 Cytidine deaminase-like IPR024072 Dihydrofolate reductase-like domain superfamily IPR004794 Riboflavin biosynthesis protein RibD IPR011549 Riboflavin-specific deaminase, C-terminal IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily IPR001783 Lumazine-binding protein IPR026017 Lumazine-binding domain IPR017938 Riboflavin synthase-like beta-barrel IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB IPR032677 GTP cyclohydrolase II IPR036144 RibA-like superfamily IPR001320 Ionotropic glutamate receptor IPR018313 Solute-binding protein family 3, conserved site IPR001638 Solute-binding protein family 3/N-terminal domain of MltF IPR000390 Small multidrug resistance protein family IPR023740 Spermidine export protein MdtJ IPR034964 Lumazine synthase IPR002180 Lumazine/riboflavin synthase IPR036467 Lumazine/riboflavin synthase superfamily IPR035926 NusB-like superfamily IPR011605 NusB antitermination factor IPR006027 NusB/RsmB/TIM44 IPR010918 PurM-like, C-terminal domain IPR036676 PurM-like, C-terminal domain superfamily IPR016188 PurM-like, N-terminal domain IPR036921 PurM-like, N-terminal domain superfamily IPR006283 Thiamine-monophosphate kinase IPR026037 Phosphatidylglycerophosphatase A IPR036681 PgpA-like superfamily IPR007686 YutG/PgpA domain IPR005477 Deoxyxylulose-5-phosphate synthase IPR029061 Thiamin diphosphate-binding fold IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II IPR005475 Transketolase-like, pyrimidine-binding domain IPR020826 Transketolase binding site IPR033248 Transketolase, C-terminal domain IPR005474 Transketolase, N-terminal IPR008949 Isoprenoid synthase domain superfamily IPR000092 Polyprenyl synthetase IPR033749 Polyprenyl synthetase, conserved site IPR003761 Exonuclease VII, small subunit IPR037004 Exonuclease VII, small subunit superfamily IPR000540 Flagellar motor protein MotA, conserved site IPR002898 MotA/TolQ/ExbB proton channel IPR006664 Outer membrane protein, bacterial IPR006665 OmpA-like domain IPR006690 Outer membrane protein, OmpA-like, conserved site IPR036737 OmpA-like domain superfamily IPR001763 Rhodanese-like domain IPR036873 Rhodanese-like domain superfamily IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR026340 Thiazole biosynthesis domain IPR020536 Thil, AANH domain IPR004114 THUMP domain IPR003720 tRNA sulfurtransferase ThiI IPR000390 Small multidrug resistance protein family IPR023737 Spermidine export protein MdtI IPR006696 Protein of unknown function DUF423 IPR040739 RlmM ferredoxin-like domain IPR002877 Ribosomal RNA methyltransferase FtsJ domain IPR011224 Ribosomal RNA large subunit methyltransferase M IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR018524 DNA/RNA non-specific endonuclease, active site IPR001604 DNA/RNA non-specific endonuclease IPR020821 Extracellular Endonuclease, subunit A IPR040255 Non-specific endonuclease IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal IPR002421 5'-3' exonuclease, N-terminal IPR036279 5'-3' exonuclease, C-terminal domain superfamily IPR020045 DNA polymerase I-like, H3TH domain IPR038969 Flap endonuclease IPR008918 Helix-hairpin-helix motif, class 2 IPR029060 PIN-like domain superfamily IPR022895 Flap endonuclease Xni IPR021826 Domain of unknown function DUF3412 IPR031100 LOG family IPR037153 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH-like superfamily IPR027820 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH, N-terminal IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 IPR004786 6-phosphogluconate dehydratase IPR042096 Dihydroxy-acid dehydratase, C-terminal IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site IPR037237 IlvD/EDD, N-terminal domain IPR009948 Syd IPR038228 Syd superfamily IPR016908 Uncharacterised conserved protein UCP029037 IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR003593 AAA+ ATPase domain IPR026253 Methionine import ATP-binding protein MetN IPR012692 ABC transporter, methionine import, ATP-binding protein MetN, proteobacteria IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain IPR018449 NIL domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR036412 HAD-like superfamily IPR006549 HAD-superfamily hydrolase,subfamily IIIA IPR023214 HAD superfamily IPR004446 D,D-heptose 1,7-bisphosphate phosphatase IPR006543 Histidinol-phosphate phosphatase IPR000843 LacI-type HTH domain IPR010982 Lambda repressor-like, DNA-binding domain superfamily IPR028082 Periplasmic binding protein-like I IPR012771 Trehalose operon repressor IPR036878 Glucose permease domain IIB IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site IPR003352 Phosphotransferase system, EIIC IPR013013 Phosphotransferase system, EIIC component, type 1 IPR001996 Phosphotransferase system, IIB component, type 1 IPR011296 Phosphotransferase system, trehalose-specific IIBC component IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component IPR006047 Glycosyl hydrolase, family 13, catalytic domain IPR013780 Glycosyl hydrolase, all-beta IPR017853 Glycoside hydrolase superfamily IPR032091 Maltogenic Amylase, C-terminal IPR012769 Trehalose-6-phosphate hydrolase IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR031322 Shikimate kinase/gluconokinase IPR006001 Carbohydrate kinase, thermoresistant glucokinase IPR019264 Domain of unknown function DUF2179 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal IPR003740 Uncharacterised membrane protein YitT IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR001085 Serine hydroxymethyltransferase IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site IPR039429 Serine hydroxymethyltransferase-like domain IPR013785 Aldolase-type TIM barrel IPR006638 Elp3/MiaB/NifB IPR031691 Lipoyl synthase, N-terminal IPR003698 Lipoyl synthase IPR007197 Radical SAM IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain IPR000544 Octanoyltransferase IPR020605 Octanoyltransferase, conserved site IPR007454 Uncharacterised protein family UPF0250 IPR027471 YbeD-like domain superfamily IPR012338 Beta-lactamase/transpeptidase-like IPR015956 Penicillin-binding protein, C-terminal domain superfamily IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal IPR012338 Beta-lactamase/transpeptidase-like IPR015956 Penicillin-binding protein, C-terminal domain superfamily IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal IPR034718 Endolytic peptidoglycan transglycosylase RlpA IPR009009 RlpA-like protein, double-psi beta-barrel domain IPR036908 RlpA-like domain superfamily IPR012997 Rare lipoprotein A IPR007730 Sporulation-like domain IPR036680 Sporulation-like domain superfamily IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB IPR003474 Gluconate transporter IPR012338 Beta-lactamase/transpeptidase-like IPR005311 Penicillin-binding protein, dimerisation domain IPR036138 Penicillin-binding protein, dimerisation domain superfamily IPR001460 Penicillin-binding protein, transpeptidase IPR017790 Penicillin-binding protein 2 IPR029028 Alpha/beta knot methyltransferases IPR003742 RNA methyltransferase RlmH IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal IPR004394 Protein Iojap/ribosomal silencing factor RsfS IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal IPR032780 DNA polymerase III subunit delta, C-terminal IPR010372 DNA polymerase III delta, N-terminal IPR005790 DNA polymerase III, delta subunit IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR007485 LPS-assembly lipoprotein LptE IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site IPR002300 Aminoacyl-tRNA synthetase, class Ia IPR002302 Leucine-tRNA ligase IPR025709 Leucyl-tRNA synthetase, editing domain IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain IPR009912 Zinc-ribbon containing domain IPR004563 Apolipoprotein N-acyltransferase IPR003010 Carbon-nitrogen hydrolase IPR036526 Carbon-nitrogen hydrolase superfamily IPR000644 CBS domain IPR036318 FAD-binding, type PCMH-like superfamily IPR016169 FAD-binding, type PCMH, subdomain 2 IPR005170 Transporter-associated domain IPR023091 Metalloprotease catalytic domain superfamily, predicted IPR002036 Endoribonuclease YbeY IPR020549 Endoribonuclease YbeY, conserved site IPR000887 KDPG/KHG aldolase IPR013785 Aldolase-type TIM barrel IPR031337 KDPG/KHG aldolase, active site 1 IPR031338 KDPG/KHG aldolase, active site 2 IPR000887 KDPG/KHG aldolase IPR013785 Aldolase-type TIM barrel IPR031337 KDPG/KHG aldolase, active site 1 IPR031338 KDPG/KHG aldolase, active site 2 IPR000887 KDPG/KHG aldolase IPR013785 Aldolase-type TIM barrel IPR031337 KDPG/KHG aldolase, active site 1 IPR031338 KDPG/KHG aldolase, active site 2 IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR003714 PhoH-like protein IPR006638 Elp3/MiaB/NifB IPR005839 Methylthiotransferase IPR020612 Methylthiotransferase, conserved site IPR013848 Methylthiotransferase, N-terminal IPR038135 Methylthiotransferase, N-terminal domain superfamily IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB IPR007197 Radical SAM IPR023404 Radical SAM, alpha/beta horseshoe IPR002792 TRAM domain IPR002938 FAD-binding domain IPR036188 FAD/NAD(P)-binding domain superfamily IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 IPR000845 Nucleoside phosphorylase domain IPR035994 Nucleoside phosphorylase superfamily IPR011268 Purine nucleoside phosphorylase IPR018099 Purine phosphorylase, family 2, conserved site IPR010943 Xanthosine phosphorylase IPR037411 HTH-type transcriptional regulator AlsR, PBP2 domain IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 IPR012675 Beta-grasp domain superfamily IPR031167 OBG-type guanine nucleotide-binding (G) domain IPR006073 GTP binding domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR004095 TGS IPR012676 TGS-like IPR023192 TGS-like domain superfamily IPR013029 YchF, C-terminal domain IPR041706 YchF, N-terminal IPR001328 Peptidyl-tRNA hydrolase IPR018171 Peptidyl-tRNA hydrolase, conserved site IPR036416 Peptidyl-tRNA hydrolase superfamily IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain IPR000836 Phosphoribosyltransferase domain IPR029057 Phosphoribosyltransferase-like IPR005946 Ribose-phosphate pyrophosphokinase IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type IPR013750 GHMP kinase, C-terminal domain IPR036554 GHMP kinase, C-terminal domain superfamily IPR006204 GHMP kinase N-terminal domain IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase IPR020568 Ribosomal protein S5 domain 2-type fold IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup IPR029046 Lipoprotein localisation LolA/LolB/LppX IPR004565 Outer membrane lipoprotein LolB IPR036188 FAD/NAD(P)-binding domain superfamily IPR023753 FAD/NAD(P)-binding domain IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily IPR006322 Glutathione reductase, eukaryote/bacterial IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal IPR018214 Glutamyl-tRNA reductase, conserved site IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily IPR036291 NAD(P)-binding domain superfamily IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase IPR005139 Peptide chain release factor IPR000352 Peptide chain release factor class I IPR004373 Peptide chain release factor 1 IPR002052 DNA methylase, N-6 adenine-specific, conserved site IPR004556 Methyltransferase HemK-like IPR025714 Methyltransferase domain IPR040758 Release factor glutamine methyltransferase, N-terminal domain IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR007360 Invasion gene expression up-regulator, SirB IPR032698 Protein SirB1, N-terminal IPR011990 Tetratricopeptide-like helical domain superfamily IPR013785 Aldolase-type TIM barrel IPR006218 DAHP synthetase I/KDSA IPR006269 3-deoxy-8-phosphooctulonate synthase IPR008334 5'-Nucleotidase, C-terminal IPR036907 5'-Nucleotidase, C-terminal domain superfamily IPR006146 5'-Nucleotidase, conserved site IPR006179 5'-Nucleotidase/apyrase IPR004843 Calcineurin-like phosphoesterase domain, ApaH type IPR029052 Metallo-dependent phosphatase-like IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain IPR020103 Pseudouridine synthase, catalytic domain superfamily IPR006145 Pseudouridine synthase, RsuA/RluA IPR000748 Pseudouridine synthase, RsuA/RluB/E/F IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site IPR002942 RNA-binding S4 domain IPR036986 RNA-binding S4 domain superfamily IPR002625 Smr domain IPR036063 Smr domain superfamily IPR002052 DNA methylase, N-6 adenine-specific, conserved site IPR007473 Ribosomal RNA large subunit methyltransferase J IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR025705 Beta-hexosaminidase IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily IPR012291 CBM2, carbohydrate-binding domain superfamily IPR004866 Chitobiase/beta-hexosaminidases, N-terminal domain IPR004867 Chitobiase C-terminal domain IPR015883 Glycoside hydrolase family 20, catalytic domain IPR017853 Glycoside hydrolase superfamily IPR029018 Beta-hexosaminidase-like, domain 2 IPR015882 Beta-hexosaminidase, bacterial type, N-terminal IPR013783 Immunoglobulin-like fold IPR014756 Immunoglobulin E-set IPR023299 P-type ATPase, cytoplasmic domain N IPR018303 P-type ATPase, phosphorylation site IPR023298 P-type ATPase, transmembrane domain superfamily IPR008250 P-type ATPase, A domain superfamily IPR036412 HAD-like superfamily IPR023214 HAD superfamily IPR017969 Heavy-metal-associated, conserved site IPR006121 Heavy metal-associated domain, HMA IPR036163 Heavy metal-associated domain superfamily IPR027256 P-type ATPase, subfamily IB IPR001757 P-type ATPase IPR033900 Porin domain, Gram-negative type IPR023614 Porin domain superfamily IPR001702 Porin, Gram-negative type IPR002299 Porin, Neisseria sp. type IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 IPR001567 Peptidase M3A/M3B catalytic domain IPR018635 Uncharacterised protein family UPF0319 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial IPR000924 Glutamyl/glutaminyl-tRNA synthetase IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain IPR033910 Glutamyl-tRNA synthetase IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel IPR006664 Outer membrane protein, bacterial IPR002368 Outer membrane protein, OmpA IPR006665 OmpA-like domain IPR006690 Outer membrane protein, OmpA-like, conserved site IPR036737 OmpA-like domain superfamily IPR000498 Outer membrane protein OmpA-like, transmembrane domain IPR011991 ArsR-like helix-turn-helix domain IPR000485 AsnC-type HTH domain IPR011008 Dimeric alpha-beta barrel IPR019888 Transcription regulator AsnC-type IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain IPR019885 Transcription regulator HTH, AsnC-type, conserved site IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR024181 Chemotaxis response regulator CheV IPR036061 CheW-like domain superfamily IPR002545 CheW-like domain IPR011006 CheY-like superfamily IPR001789 Signal transduction response regulator, receiver domain IPR024181 Chemotaxis response regulator CheV IPR036061 CheW-like domain superfamily IPR002545 CheW-like domain IPR011006 CheY-like superfamily IPR001789 Signal transduction response regulator, receiver domain IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal IPR000780 MCP methyltransferase, CheR-type IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR001444 Flagellar basal body rod protein, N-terminal IPR019776 Flagellar basal body rod protein, conserved site IPR006300 Flagellar basal-body rod protein FlgB IPR001444 Flagellar basal body rod protein, N-terminal IPR019776 Flagellar basal body rod protein, conserved site IPR010930 Flagellar basal-body/hook protein, C-terminal domain IPR006299 Flagellar basal-body rod protein FlgC IPR001444 Flagellar basal body rod protein, N-terminal IPR019776 Flagellar basal body rod protein, conserved site IPR010930 Flagellar basal-body/hook protein, C-terminal domain IPR006299 Flagellar basal-body rod protein FlgC IPR005648 Flagellar hook capping protein IPR025965 FlgD Ig-like domain IPR025963 FlgD Tudor-like domain IPR011491 Flagellar hook protein FlgE IPR037058 Flagellar hook protein FlgE superfamily IPR001444 Flagellar basal body rod protein, N-terminal IPR019776 Flagellar basal body rod protein, conserved site IPR020013 Flagellar hook-basal body protein, FlgE/F/G IPR010930 Flagellar basal-body/hook protein, C-terminal domain IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like IPR011491 Flagellar hook protein FlgE IPR037058 Flagellar hook protein FlgE superfamily IPR001444 Flagellar basal body rod protein, N-terminal IPR019776 Flagellar basal body rod protein, conserved site IPR020013 Flagellar hook-basal body protein, FlgE/F/G IPR010930 Flagellar basal-body/hook protein, C-terminal domain IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like IPR001633 EAL domain IPR035919 EAL domain superfamily IPR000160 GGDEF domain IPR029787 Nucleotide cyclase IPR000014 PAS domain IPR035965 PAS domain superfamily IPR013656 PAS fold-4 IPR001444 Flagellar basal body rod protein, N-terminal IPR019776 Flagellar basal body rod protein, conserved site IPR020013 Flagellar hook-basal body protein, FlgE/F/G IPR010930 Flagellar basal-body/hook protein, C-terminal domain IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like IPR001444 Flagellar basal body rod protein, N-terminal IPR019776 Flagellar basal body rod protein, conserved site IPR020013 Flagellar hook-basal body protein, FlgE/F/G IPR010930 Flagellar basal-body/hook protein, C-terminal domain IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like IPR001444 Flagellar basal body rod protein, N-terminal IPR019776 Flagellar basal body rod protein, conserved site IPR020013 Flagellar hook-basal body protein, FlgE/F/G IPR010930 Flagellar basal-body/hook protein, C-terminal domain IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like IPR012834 Flagellar basal-body rod FlgG IPR000527 Flagellar L-ring protein IPR001782 Flagellar P-ring protein IPR019301 Flagellar protein FlgJ, N-terminal IPR013377 Peptidoglycan hydrolase FlgJ IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain IPR010810 Flagellin hook, IN motif IPR010930 Flagellar basal-body/hook protein, C-terminal domain IPR002371 Flagellar hook-associated protein 1 IPR013384 Flagellar hook-associated protein 3 IPR001029 Flagellin, D0/D1 domain IPR013384 Flagellar hook-associated protein 3 IPR001029 Flagellin, D0/D1 domain IPR001492 Flagellin IPR042187 Flagellin, C-terminal domain, subdomain 2 IPR001029 Flagellin, D0/D1 domain IPR010810 Flagellin hook, IN motif IPR007536 Ribosomal RNA small subunit methyltransferase J IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR001492 Flagellin IPR001029 Flagellin, D0/D1 domain IPR010810 Flagellin hook, IN motif IPR011055 Duplicated hybrid motif IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 IPR008279 PEP-utilising enzyme, mobile domain IPR018274 PEP-utilising enzyme, active site IPR000121 PEP-utilising enzyme, C-terminal IPR023151 PEP-utilising enzyme, conserved site IPR036637 Phosphohistidine domain superfamily IPR024692 Phosphotransferase system, enzyme I IPR006318 Phosphotransferase system, enzyme I-like IPR008731 Phosphotransferase system, enzyme I N-terminal IPR036618 PtsI, HPr-binding domain superfamily IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily IPR040442 Pyruvate kinase-like domain superfamily IPR000032 Phosphocarrier protein HPr-like IPR035895 HPr-like superfamily IPR001020 Phosphotransferase system, HPr histidine phosphorylation site IPR002114 Phosphotransferase system, HPr serine phosphorylation site IPR005856 Cysteine synthase IPR005859 Cysteine synthase CysK IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site IPR001926 Pyridoxal-phosphate dependent enzyme IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme IPR022985 Sulfate transporter CysZ IPR011919 Cell division protein ZipA IPR007449 ZipA, C-terminal FtsZ-binding domain IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily IPR001357 BRCT domain IPR036420 BRCT domain superfamily IPR041663 DisA/LigA, helix-hairpin-helix motif IPR018239 NAD-dependent DNA ligase, active site IPR033136 NAD-dependent DNA ligase, conserved site IPR001679 NAD-dependent DNA ligase IPR013839 NAD-dependent DNA ligase, adenylation IPR013840 NAD-dependent DNA ligase, N-terminal IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 IPR012340 Nucleic acid-binding, OB-fold IPR004150 NAD-dependent DNA ligase, OB-fold IPR010994 RuvA domain 2-like IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type IPR005318 Outer membrane porin, bacterial IPR023614 Porin domain superfamily IPR001107 Band 7 domain IPR036013 Band 7/SPFH domain superfamily IPR018080 Band 7/stomatin-like, conserved site IPR032435 Band 7, C-terminal extension IPR001972 Stomatin family IPR001107 Band 7 domain IPR036013 Band 7/SPFH domain superfamily IPR018080 Band 7/stomatin-like, conserved site IPR032435 Band 7, C-terminal extension IPR001972 Stomatin family IPR036249 Thioredoxin-like superfamily IPR013766 Thioredoxin domain IPR011990 Tetratricopeptide-like helical domain superfamily IPR036291 NAD(P)-binding domain superfamily IPR020904 Short-chain dehydrogenase/reductase, conserved site IPR002347 Short-chain dehydrogenase/reductase SDR IPR013549 Domain of unknown function DUF1731 IPR001509 NAD-dependent epimerase/dehydratase IPR036291 NAD(P)-binding domain superfamily IPR010099 Epimerase family protein SDR39U1 IPR004779 Carboxylate/Amino Acid/Amine Transporter IPR000620 EamA domain IPR011435 Na(+), Li(+), K(+)/H(+) antiporter subunit A/B IPR011435 Na(+), Li(+), K(+)/H(+) antiporter subunit A/B IPR024654 Calcineurin-like phosphoesterase domain, lpxH-type IPR029052 Metallo-dependent phosphatase-like IPR041802 YfcE-like, metallophosphatase domain IPR020935 Phosphodiesterase YfcE, conserved site IPR000979 Phosphodiesterase MJ0936/Vps29 IPR035288 Trans-membrane regulatory protein ToxS IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR006015 Universal stress protein A family IPR006016 UspA IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR006015 Universal stress protein A family IPR006016 UspA IPR001867 OmpR/PhoB-type DNA-binding domain IPR016032 Signal transduction response regulator, C-terminal effector IPR039420 Transcriptional regulatory protein WalR-like IPR036388 Winged helix-like DNA-binding domain superfamily IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR019805 Heat shock protein Hsp90, conserved site IPR037196 HSP90, C-terminal domain IPR001404 Heat shock protein Hsp90 family IPR020575 Heat shock protein Hsp90, N-terminal IPR020568 Ribosomal protein S5 domain 2-type fold IPR006259 Adenylate kinase subfamily IPR000850 Adenylate kinase/UMP-CMP kinase IPR033690 Adenylate kinase, conserved site IPR007862 Adenylate kinase, active site lid domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR001015 Ferrochelatase IPR019772 Ferrochelatase, active site IPR033644 Ferrochelatase, C-terminal IPR033659 Ferrochelatase, N-terminal IPR005279 Dipeptide/tripeptide permease IPR020846 Major facilitator superfamily domain IPR036259 MFS transporter superfamily IPR000109 Proton-dependent oligopeptide transporter family IPR018456 PTR2 family proton/oligopeptide symporter, conserved site IPR006645 NusG, N-terminal IPR036735 NusG, N-terminal domain superfamily IPR010215 Transcription antitermination protein RfaH IPR006426 Asparagine synthase, glutamine-hydrolyzing IPR001962 Asparagine synthase IPR033738 Asparagine synthase, N-terminal domain IPR017932 Glutamine amidotransferase type 2 domain IPR029055 Nucleophile aminohydrolases, N-terminal IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR006153 Cation/H+ exchanger IPR004771 K+/H+ exchanger IPR038770 Sodium/solute symporter superfamily IPR036291 NAD(P)-binding domain superfamily IPR003148 Regulator of K+ conductance, N-terminal IPR000835 MarR-type HTH domain IPR000600 ROK family IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR006680 Amidohydrolase-related IPR003764 N-acetylglucosamine-6-phosphate deacetylase IPR011059 Metal-dependent hydrolase, composite domain superfamily IPR032466 Metal-dependent hydrolase IPR001519 Ferritin IPR012347 Ferritin-like IPR009040 Ferritin-like diiron domain IPR009078 Ferritin-like superfamily IPR008331 Ferritin/DPS protein domain IPR041719 Ferritin, prokaryotic-type IPR036878 Glucose permease domain IIB IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site IPR003352 Phosphotransferase system, EIIC IPR013013 Phosphotransferase system, EIIC component, type 1 IPR001996 Phosphotransferase system, IIB component, type 1 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component IPR036878 Glucose permease domain IIB IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site IPR003352 Phosphotransferase system, EIIC IPR013013 Phosphotransferase system, EIIC component, type 1 IPR001996 Phosphotransferase system, IIB component, type 1 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site IPR004514 Glutamine-tRNA synthetase IPR022861 Glutamine-tRNA ligase, bacterial IPR000924 Glutamyl/glutaminyl-tRNA synthetase IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR002481 Ferric-uptake regulator IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR008254 Flavodoxin/nitric oxide synthase IPR001226 Flavodoxin, conserved site IPR010086 Flavodoxin, long chain IPR029039 Flavoprotein-like superfamily IPR029058 Alpha/Beta hydrolase fold IPR000073 Alpha/beta hydrolase fold-1 IPR013321 Arc-type ribbon-helix-helix IPR010985 Ribbon-helix-helix IPR005621 Negative modulator of initiation of replication SeqA IPR026577 Replication modulator SeqA, C-terminal DNA-binding domain IPR036835 Replication modulator SeqA, C-terminal DNA-binding domain superfamily IPR033761 Negative modulator of initiation of replication SeqA, N-terminal IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III IPR005843 Alpha-D-phosphohexomutase, C-terminal IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily IPR016066 Alpha-D-phosphohexomutase, conserved site IPR005852 Phosphoglucomutase, alpha-D-glucose specific IPR019598 Universal stress protein B IPR002678 GTP cyclohydrolase 1 type 2/Nif3 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily IPR016142 Citrate synthase-like, large alpha subdomain IPR016143 Citrate synthase-like, small alpha subdomain IPR002020 Citrate synthase IPR019810 Citrate synthase active site IPR024176 Citrate synthase, bacterial-type IPR036969 Citrate synthase superfamily IPR010953 Citrate synthase, type I IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site IPR014314 Succinate dehydrogenase, cytochrome b556 subunit IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain IPR036188 FAD/NAD(P)-binding domain superfamily IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily IPR011281 Succinate dehydrogenase, flavoprotein subunit IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit IPR036010 2Fe-2S ferredoxin-like superfamily IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site IPR012675 Beta-grasp domain superfamily IPR009051 Alpha-helical ferredoxin IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein IPR025192 Succinate dehydogenase/fumarate reductase N-terminal IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain IPR011603 2-oxoglutarate dehydrogenase E1 component IPR001017 Dehydrogenase, E1 component IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal IPR042179 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain superfamily IPR029061 Thiamin diphosphate-binding fold IPR005475 Transketolase-like, pyrimidine-binding domain IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain IPR000089 Biotin/lipoyl attachment IPR023213 Chloramphenicol acetyltransferase-like domain superfamily IPR036625 E3-binding domain superfamily IPR004167 Peripheral subunit-binding domain IPR011053 Single hybrid motif IPR006255 Dihydrolipoamide succinyltransferase IPR011761 ATP-grasp fold IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type IPR013815 ATP-grasp fold, subdomain 1 IPR005811 ATP-citrate lyase/succinyl-CoA ligase IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site IPR005809 Succinate--CoA synthetase, beta subunit IPR016102 Succinyl-CoA synthetase-like IPR004792 3-Dehydro-bile acid delta(4,6)-reductase-like IPR036188 FAD/NAD(P)-binding domain superfamily IPR023166 HI0933-like insert domain superfamily IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site IPR003781 CoA-binding IPR005810 Succinyl-CoA ligase, alpha subunit IPR005811 ATP-citrate lyase/succinyl-CoA ligase IPR036291 NAD(P)-binding domain superfamily IPR016102 Succinyl-CoA synthetase-like IPR037294 ABC transporter, BtuC-like IPR001626 ABC transporter, TroCD-like IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR017882 Zinc import ATP-binding protein ZnuC IPR006128 Adhesion lipoprotein IPR035520 High-affinity zinc uptake system protein ZnuA IPR006127 Periplasmic solute binding protein, ZnuA-like IPR003313 AraC-type arabinose-binding/dimerisation domain IPR009057 Homeobox-like domain superfamily IPR018060 DNA binding HTH domain, AraC-type IPR014710 RmlC-like jelly roll fold IPR011051 RmlC-like cupin domain superfamily IPR020449 Transcription regulator HTH, AraC- type IPR023609 Transcription regulator HTH, RhaS IPR007167 Ferrous iron transporter FeoA domain IPR038157 Ferrous iron transporter, core domain IPR008988 Transcriptional repressor, C-terminal IPR003373 Ferrous iron transport protein B IPR011640 Ferrous iron transport protein B, C-terminal IPR041069 FeoB, cytosolic helical domain IPR030389 FeoB-type guanine nucleotide-binding (G) domain IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR005225 Small GTP-binding protein domain IPR003593 AAA+ ATPase domain IPR003018 GAF domain IPR029016 GAF-like domain superfamily IPR009057 Homeobox-like domain superfamily IPR002197 DNA binding HTH domain, Fis-type IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR002078 RNA polymerase sigma factor 54 interaction domain IPR025662 Sigma-54 interaction domain, ATP-binding site 1 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 IPR025944 Sigma-54 interaction domain, conserved site IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site IPR001278 Arginine-tRNA ligase IPR005148 Arginyl tRNA synthetase N-terminal domain IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily IPR035684 Arginyl-tRNA synthetase, catalytic core domain IPR008909 DALR anticodon binding IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding IPR010393 Protein of unknown function DUF991 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase IPR002912 ACT domain IPR041729 Formyltetrahydrofolate deformylase, C-terminal hydrolase domain IPR002376 Formyl transferase, N-terminal IPR036477 Formyl transferase, N-terminal domain superfamily IPR004810 Formyltetrahydrofolate deformylase IPR006555 ATP-dependent helicase, C-terminal IPR014013 Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type IPR006935 Helicase/UvrB, N-terminal IPR014001 Helicase superfamily 1/2, ATP-binding domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR000905 Gcp-like domain IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB IPR029058 Alpha/Beta hydrolase fold IPR000073 Alpha/beta hydrolase fold-1 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase IPR025110 AMP-binding enzyme, C-terminal domain IPR020845 AMP-binding, conserved site IPR000873 AMP-dependent synthetase/ligase IPR042099 AMP-dependent synthetase-like superfamily IPR002562 3'-5' exonuclease domain IPR010997 HRDC-like superfamily IPR002121 HRDC domain IPR006292 Ribonuclease D IPR012337 Ribonuclease H-like superfamily IPR036397 Ribonuclease H superfamily IPR005527 Cell division topological specificity factor MinE IPR036707 Cell division topological specificity factor MinE superfamily IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain IPR010223 ATP binding protein MinD, bacterial-type IPR025501 ATP binding protein MinD IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal IPR013033 Septum formation inhibitor MinC IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily IPR007874 Septum formation inhibitor MinC, N-terminal IPR038061 MinC, Proteobacteria, N-terminal domain superfamily IPR005526 Septum formation inhibitor MinC, C-terminal IPR038068 YcgL-like superfamily IPR027354 YcgL domain IPR023346 Lysozyme-like domain superfamily IPR011757 Lytic transglycosylase MltB IPR031304 Transglycosylase SLT domain 2 IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR036291 NAD(P)-binding domain superfamily IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 IPR000794 Beta-ketoacyl synthase IPR018201 Beta-ketoacyl synthase, active site IPR014031 Beta-ketoacyl synthase, C-terminal IPR014030 Beta-ketoacyl synthase, N-terminal IPR020841 Polyketide synthase, beta-ketoacyl synthase domain IPR016039 Thiolase-like IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 IPR000794 Beta-ketoacyl synthase IPR018201 Beta-ketoacyl synthase, active site IPR014031 Beta-ketoacyl synthase, C-terminal IPR014030 Beta-ketoacyl synthase, N-terminal IPR020841 Polyketide synthase, beta-ketoacyl synthase domain IPR016039 Thiolase-like IPR011285 3-oxoacyl-(acyl-carrier-protein) reductase, putative IPR036291 NAD(P)-binding domain superfamily IPR002347 Short-chain dehydrogenase/reductase SDR IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ IPR029069 HotDog domain superfamily IPR001106 Aromatic amino acid lyase IPR024083 Fumarase/histidase, N-terminal IPR005921 Histidine ammonia-lyase IPR008948 L-Aspartase-like IPR022313 Phenylalanine/histidine ammonia-lyases, active site IPR039528 DPM1-like IPR001173 Glycosyltransferase 2-like IPR029044 Nucleotide-diphospho-sugar transferases IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ IPR029069 HotDog domain superfamily IPR036736 ACP-like superfamily IPR003231 Acyl carrier protein (ACP) IPR009081 Phosphopantetheine binding ACP domain IPR036736 ACP-like superfamily IPR003231 Acyl carrier protein (ACP) IPR009081 Phosphopantetheine binding ACP domain IPR006162 Phosphopantetheine attachment site IPR036188 FAD/NAD(P)-binding domain superfamily IPR006905 Flavin-dependent halogenase IPR000644 CBS domain IPR002550 CNNM, transmembrane domain IPR036318 FAD-binding, type PCMH-like superfamily IPR016169 FAD-binding, type PCMH, subdomain 2 IPR005170 Transporter-associated domain IPR011545 DEAD/DEAH box helicase domain IPR028622 ATP-dependent RNA helicase RhlE IPR014001 Helicase superfamily 1/2, ATP-binding domain IPR001650 Helicase, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site IPR014014 RNA helicase, DEAD-box type, Q motif IPR011545 DEAD/DEAH box helicase domain IPR028622 ATP-dependent RNA helicase RhlE IPR014001 Helicase superfamily 1/2, ATP-binding domain IPR001650 Helicase, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site IPR014014 RNA helicase, DEAD-box type, Q motif IPR011545 DEAD/DEAH box helicase domain IPR028622 ATP-dependent RNA helicase RhlE IPR014001 Helicase superfamily 1/2, ATP-binding domain IPR001650 Helicase, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site IPR014014 RNA helicase, DEAD-box type, Q motif IPR011545 DEAD/DEAH box helicase domain IPR028622 ATP-dependent RNA helicase RhlE IPR014001 Helicase superfamily 1/2, ATP-binding domain IPR001650 Helicase, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site IPR014014 RNA helicase, DEAD-box type, Q motif IPR011545 DEAD/DEAH box helicase domain IPR028622 ATP-dependent RNA helicase RhlE IPR014001 Helicase superfamily 1/2, ATP-binding domain IPR001650 Helicase, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site IPR014014 RNA helicase, DEAD-box type, Q motif IPR011545 DEAD/DEAH box helicase domain IPR028622 ATP-dependent RNA helicase RhlE IPR014001 Helicase superfamily 1/2, ATP-binding domain IPR001650 Helicase, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site IPR014014 RNA helicase, DEAD-box type, Q motif IPR036291 NAD(P)-binding domain superfamily IPR006037 Regulator of K+ conductance, C-terminal IPR036721 Regulator of K+ conductance, C-terminal domain superfamily IPR003148 Regulator of K+ conductance, N-terminal IPR003445 Cation transporter IPR004772 TrkH potassium transport family IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal IPR005218 Diacylglycerol/lipid kinase IPR001206 Diacylglycerol kinase, catalytic domain IPR022433 Lipid kinase YegS IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily IPR003846 Protein adenylyltransferase SelO IPR004682 TRAP transporter solute receptor, DctP family IPR018389 TRAP transporter solute receptor DctP/TeaA IPR038404 TRAP transporter solute receptor DctP superfamily IPR007387 TRAP transporter, small membrane protein DctQ IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit IPR004681 TRAP transporter large membrane protein DctM IPR003593 AAA+ ATPase domain IPR011006 CheY-like superfamily IPR009057 Homeobox-like domain superfamily IPR002197 DNA binding HTH domain, Fis-type IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR001789 Signal transduction response regulator, receiver domain IPR002078 RNA polymerase sigma factor 54 interaction domain IPR025662 Sigma-54 interaction domain, ATP-binding site 1 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 IPR025944 Sigma-54 interaction domain, conserved site IPR033479 Double Cache domain 1 IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR029151 Periplasmic sensor-like domain superfamily IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR017055 Signal transduction histidine kinase, DctB (C4-dicarboxylate transport system regulator) IPR033479 Double Cache domain 1 IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR029151 Periplasmic sensor-like domain superfamily IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR017055 Signal transduction histidine kinase, DctB (C4-dicarboxylate transport system regulator) IPR033479 Double Cache domain 1 IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR029151 Periplasmic sensor-like domain superfamily IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR017055 Signal transduction histidine kinase, DctB (C4-dicarboxylate transport system regulator) IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain IPR005215 Trigger factor IPR008880 Trigger factor, C-terminal IPR037041 Trigger factor, C-terminal domain superfamily IPR008881 Trigger factor, ribosome-binding, bacterial IPR036611 Trigger factor ribosome-binding domain superfamily IPR027304 Trigger factor/SurA domain superfamily IPR001907 ATP-dependent Clp protease proteolytic subunit IPR029045 ClpP/crotonase-like domain superfamily IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA IPR033135 ClpP, histidine active site IPR018215 ClpP, Ser active site IPR003593 AAA+ ATPase domain IPR003959 ATPase, AAA-type, core IPR019489 Clp ATPase, C-terminal IPR004487 Clp protease, ATP-binding subunit ClpX IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR010603 Zinc finger, ClpX C4-type IPR038366 Zinc finger, ClpX C4-type superfamily IPR003593 AAA+ ATPase domain IPR003959 ATPase, AAA-type, core IPR027543 Lon protease, bacterial IPR004815 Lon protease, bacterial/eukaryotic-type IPR008269 Peptidase S16, Lon proteolytic domain IPR027065 Lon protease IPR003111 Lon, substrate-binding domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR015947 PUA-like superfamily IPR020568 Ribosomal protein S5 domain 2-type fold IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup IPR000119 Histone-like DNA-binding protein IPR020816 Histone-like DNA-binding protein, conserved site IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site IPR027304 Trigger factor/SurA domain superfamily IPR004509 Competence protein ComEA, helix-hairpin-helix domain IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 IPR010994 RuvA domain 2-like IPR006261 dNTP triphosphohydrolase IPR023023 dNTP triphosphohydrolase, type 2 IPR003607 HD/PDEase domain IPR006674 HD domain IPR026875 Phosphohydrolase-associated domain IPR003607 HD/PDEase domain IPR022971 5'-deoxynucleotidase YfbR IPR039356 Metal-dependent nucleoside 5'-monophosphatase IPR004839 Aminotransferase, class I/classII IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR005801 ADC synthase IPR015890 Chorismate-utilising enzyme, C-terminal IPR004561 Isochorismate synthase IPR034681 Isochorismate synthase MenF IPR029035 DHS-like NAD/FAD-binding domain superfamily IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase IPR032264 Menaquinone biosynthesis protein MenD, middle domain IPR029061 Thiamin diphosphate-binding fold IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding IPR029058 Alpha/Beta hydrolase fold IPR000073 Alpha/beta hydrolase fold-1 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase IPR029045 ClpP/crotonase-like domain superfamily IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB IPR018376 Enoyl-CoA hydratase/isomerase, conserved site IPR001753 Enoyl-CoA hydratase/isomerase IPR014748 Enoyl-CoA hydratase, C-terminal IPR036849 Enolase-like, C-terminal domain superfamily IPR029017 Enolase-like, N-terminal IPR029065 Enolase C-terminal domain-like IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal IPR010196 o-Succinylbenzoate synthase, MenC type1 IPR025110 AMP-binding enzyme, C-terminal domain IPR020845 AMP-binding, conserved site IPR000873 AMP-dependent synthetase/ligase IPR042099 AMP-dependent synthetase-like superfamily IPR010192 2-succinylbenzoate--CoA ligase IPR018383 Uncharacterised protein family UPF0324, prokaryote IPR023727 Lysophospholipid transporter LplT IPR011701 Major facilitator superfamily IPR036259 MFS transporter superfamily IPR039562 Membrane fusion protein, biotin-lipoyl like domain IPR022824 Multidrug resistance protein MdtA IPR006143 RND efflux pump, membrane fusion protein IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site IPR001926 Pyridoxal-phosphate dependent enzyme IPR023927 2,3-diaminopropionate biosynthesis protein SbnA IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme IPR011991 ArsR-like helix-turn-helix domain IPR000485 AsnC-type HTH domain IPR011008 Dimeric alpha-beta barrel IPR019888 Transcription regulator AsnC-type IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain IPR019885 Transcription regulator HTH, AsnC-type, conserved site IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR011991 ArsR-like helix-turn-helix domain IPR000485 AsnC-type HTH domain IPR011008 Dimeric alpha-beta barrel IPR019888 Transcription regulator AsnC-type IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain IPR019885 Transcription regulator HTH, AsnC-type, conserved site IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR003703 Acyl-CoA thioesterase IPR029069 HotDog domain superfamily IPR039366 YscW/ExsB IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain IPR036388 Winged helix-like DNA-binding domain superfamily IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR032677 GTP cyclohydrolase II IPR012816 NADAR IPR000926 GTP cyclohydrolase II, RibA IPR036144 RibA-like superfamily IPR037238 YbiA-like superfamily IPR011006 CheY-like superfamily IPR003660 HAMP domain IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR036641 HPT domain superfamily IPR033414 Periplasmic sensor domain IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain IPR001789 Signal transduction response regulator, receiver domain IPR017856 Integrase-like, N-terminal IPR002876 Transcriptional regulator TACO1-like IPR026564 Transcriptional regulator TACO1-like, domain 3 IPR029072 YebC-like IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR015854 ABC transporter, lipoprotein release, LolD IPR011924 Lipoprotein releasing system, ATP-binding protein IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR003018 GAF domain IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR010559 Signal transduction histidine kinase, internal region IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region IPR011006 CheY-like superfamily IPR007492 LytTR DNA-binding domain IPR001789 Signal transduction response regulator, receiver domain IPR001451 Hexapeptide repeat IPR018357 Hexapeptide transferase, conserved site IPR011004 Trimeric LpxA-like superfamily IPR004445 Sodium/glutamate symport carrier protein GltS IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR004839 Aminotransferase, class I/classII IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR000524 Transcription regulator HTH, GntR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR004839 Aminotransferase, class I/classII IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR000524 Transcription regulator HTH, GntR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR004445 Sodium/glutamate symport carrier protein GltS IPR006148 Glucosamine/galactosamine-6-phosphate isomerase IPR004547 Glucosamine-6-phosphate isomerase IPR018321 Glucosamine-6-phosphate isomerase, conserved site IPR037171 NagB/RpiA transferase-like IPR005119 LysR, substrate-binding IPR020890 Transcription regulator HTH, HdfR IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR012093 Pirin IPR003829 Pirin, N-terminal domain IPR041602 Quercetin 2,3-dioxygenase, C-terminal cupin domain IPR014710 RmlC-like jelly roll fold IPR011051 RmlC-like cupin domain superfamily IPR032808 DoxX family IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal IPR037046 DNA-3-methyladenine glycosylase AlkA, N-terminal domain superfamily IPR000035 Alkylbase DNA glycosidase, conserved site IPR011257 DNA glycosylase IPR003265 HhH-GPD domain IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain IPR023546 Methylated-DNA--protein-cysteine methyltransferase IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily IPR036388 Winged helix-like DNA-binding domain superfamily IPR003740 Uncharacterised membrane protein YitT IPR004680 Citrate transporter-like domain IPR004672 Na+/H+ antiporter NhaD IPR002126 Cadherin-like IPR003610 Carbohydrate-binding module family 5/12 IPR036573 Carbohydrate-binding module superfamily 5/12 IPR011583 Chitinase II IPR029070 Chitinase insertion domain superfamily IPR013540 Chitinase A N-terminal IPR001223 Glycoside hydrolase family 18, catalytic domain IPR001579 Glycoside hydrolase, chitinase active site IPR017853 Glycoside hydrolase superfamily IPR013783 Immunoglobulin-like fold IPR014756 Immunoglobulin E-set IPR022409 PKD/Chitinase domain IPR002126 Cadherin-like IPR003610 Carbohydrate-binding module family 5/12 IPR036573 Carbohydrate-binding module superfamily 5/12 IPR011583 Chitinase II IPR029070 Chitinase insertion domain superfamily IPR013540 Chitinase A N-terminal IPR001223 Glycoside hydrolase family 18, catalytic domain IPR001579 Glycoside hydrolase, chitinase active site IPR017853 Glycoside hydrolase superfamily IPR013783 Immunoglobulin-like fold IPR014756 Immunoglobulin E-set IPR022409 PKD/Chitinase domain IPR009664 Pyrimidine/purine nucleoside phosphorylase IPR014710 RmlC-like jelly roll fold IPR011051 RmlC-like cupin domain superfamily IPR001633 EAL domain IPR035919 EAL domain superfamily IPR000160 GGDEF domain IPR003660 HAMP domain IPR029787 Nucleotide cyclase IPR001633 EAL domain IPR035919 EAL domain superfamily IPR000160 GGDEF domain IPR003660 HAMP domain IPR029787 Nucleotide cyclase IPR002528 Multi antimicrobial extrusion protein IPR020103 Pseudouridine synthase, catalytic domain superfamily IPR006225 Pseudouridine synthase, RluC/RluD IPR006224 Pseudouridine synthase, RluC/RluD, conserved site IPR006145 Pseudouridine synthase, RsuA/RluA IPR000150 Cof family IPR036412 HAD-like superfamily IPR006379 HAD-superfamily hydrolase, subfamily IIB IPR023214 HAD superfamily IPR029058 Alpha/Beta hydrolase fold IPR000801 Putative esterase IPR014186 S-formylglutathione hydrolase IPR014183 Alcohol dehydrogenase class III IPR013149 Alcohol dehydrogenase, C-terminal IPR013154 Alcohol dehydrogenase, N-terminal IPR002328 Alcohol dehydrogenase, zinc-type, conserved site IPR011032 GroES-like superfamily IPR036291 NAD(P)-binding domain superfamily IPR020843 Polyketide synthase, enoylreductase domain IPR001447 Arylamine N-acetyltransferase IPR038765 Papain-like cysteine peptidase superfamily IPR011991 ArsR-like helix-turn-helix domain IPR029016 GAF-like domain superfamily IPR014757 Transcription regulator IclR, C-terminal IPR005471 Transcription regulator IclR, N-terminal IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase IPR036291 NAD(P)-binding domain superfamily IPR020904 Short-chain dehydrogenase/reductase, conserved site IPR002347 Short-chain dehydrogenase/reductase SDR IPR019629 Uncharacterised protein family HI1736/YgjV IPR026267 Inner membrane protein YgjV IPR019629 Uncharacterised protein family HI1736/YgjV IPR026267 Inner membrane protein YgjV IPR013096 Cupin 2, conserved barrel IPR025499 Pectin degradation protein KdgF IPR014710 RmlC-like jelly roll fold IPR011051 RmlC-like cupin domain superfamily IPR002173 Carbohydrate/puine kinase, PfkB, conserved site IPR011611 Carbohydrate kinase PfkB IPR029056 Ribokinase-like IPR039448 Right handed beta helix domain IPR012334 Pectin lyase fold IPR011050 Pectin lyase fold/virulence factor IPR038377 Sodium/glucose symporter superfamily IPR001734 Sodium/solute symporter IPR018212 Sodium/solute symporter, conserved site IPR027946 Oligogalacturonate lyase domain IPR015943 WD40/YVTN repeat-like-containing domain superfamily IPR013113 FAD-binding 9, siderophore-interacting IPR017927 FAD-binding domain, ferredoxin reductase-type IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain IPR017938 Riboflavin synthase-like beta-barrel IPR007037 Siderophore-interacting protein, C-terminal domain IPR039374 Siderophore-interacting protein IPR001123 Amino acid exporter protein, LeuE-type IPR004302 Cellulose/chitin-binding protein, N-terminal IPR041029 N-acetylglucosamine binding protein A domain 2 IPR014756 Immunoglobulin E-set IPR001646 Pentapeptide repeat IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel IPR005618 Outer membrane protein, OmpW IPR039562 Membrane fusion protein, biotin-lipoyl like domain IPR004638 Drug resistance transporter EmrB-like IPR011701 Major facilitator superfamily IPR020846 Major facilitator superfamily domain IPR036259 MFS transporter superfamily IPR001279 Metallo-beta-lactamase IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like IPR008928 Six-hairpin glycosidase superfamily IPR012341 Six-hairpin glycosidase-like superfamily IPR001661 Glycoside hydrolase, family 37 IPR002589 Macro domain IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain IPR037523 Vicinal oxygen chelate (VOC) domain IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR036412 HAD-like superfamily IPR006439 HAD hydrolase, subfamily IA IPR041492 Haloacid dehalogenase-like hydrolase IPR023214 HAD superfamily IPR023198 Phosphoglycolate phosphatase-like, domain 2 IPR041522 CdaR, GGDEF-like domain IPR008599 Putative sugar diacid recognition IPR025736 PucR C-terminal helix-turn-helix domain IPR042070 PucR C-terminal helix-turn-helix domain superfamily IPR003474 Gluconate transporter IPR018193 Glycerate kinase, flavodoxin-like fold IPR004381 Glycerate kinase IPR018197 Glycerate kinase, restriction-enzyme-like fold IPR036129 Glycerate kinase superfamily IPR016181 Acyl-CoA N-acyltransferase IPR000182 GNAT domain IPR027455 Spermine/spermidine acetyltransferase, N-terminal IPR036291 NAD(P)-binding domain superfamily IPR020904 Short-chain dehydrogenase/reductase, conserved site IPR002347 Short-chain dehydrogenase/reductase SDR IPR009154 Membrane-bound tetrahaem cytochrome TorC/YecK IPR011031 Multihaem cytochrome IPR036280 Multiheme cytochrome superfamily IPR005126 NapC/NirT cytochrome c, N-terminal IPR038266 NapC/NirT cytochrome c superfamily IPR009010 Aspartate decarboxylase-like domain superfamily IPR006658 Molybdopterin guanine dinucleotide-containing S/N-oxide reductase IPR041954 Trimethylamine-N-oxide reductase-like, molybdopterin-binding domain IPR041460 Molybdopterin oxidoreductase, N-terminal IPR006657 Molybdopterin dinucleotide-binding domain IPR006656 Molybdopterin oxidoreductase IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site IPR006311 Twin-arginine translocation pathway, signal sequence IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal IPR013785 Aldolase-type TIM barrel IPR036206 Thiamin phosphate synthase superfamily IPR022998 Thiamine phosphate synthase/TenI IPR034291 Thiamine phosphate synthase IPR000417 Hydroxyethylthiazole kinase IPR029056 Ribokinase-like IPR016084 Haem oxygenase-like, multi-helical IPR004305 Thiaminase-2/PQQC IPR027574 Thiaminase II IPR027939 NMT1/THI5 family IPR015168 SsuA/THI5-like IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase IPR029056 Ribokinase-like IPR002510 Metalloprotease TldD/PmbA IPR035068 Metalloprotease TldD/PmbA, N-terminal IPR036059 Metalloprotease TldD/PmbA superfamily IPR025502 TldD IPR002510 Metalloprotease TldD/PmbA IPR035068 Metalloprotease TldD/PmbA, N-terminal IPR036059 Metalloprotease TldD/PmbA superfamily IPR029028 Alpha/beta knot methyltransferases IPR007158 tRNA (pseudouridine(54)-N(1))-methyltransferase, TrmY IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal IPR021230 Protein of unknown function DUF2810 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain IPR036291 NAD(P)-binding domain superfamily IPR001557 L-lactate/malate dehydrogenase IPR011304 L-lactate dehydrogenase IPR018177 L-lactate dehydrogenase, active site IPR022383 Lactate/malate dehydrogenase, C-terminal IPR001236 Lactate/malate dehydrogenase, N-terminal IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal IPR036291 NAD(P)-binding domain superfamily IPR011006 CheY-like superfamily IPR001867 OmpR/PhoB-type DNA-binding domain IPR016032 Signal transduction response regulator, C-terminal effector IPR001789 Signal transduction response regulator, receiver domain IPR039420 Transcriptional regulatory protein WalR-like IPR036388 Winged helix-like DNA-binding domain superfamily IPR003660 HAMP domain IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR031930 2-component histidine kinase, sensor domain IPR038428 2-component histidine kinase, sensor domain superfamily IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR012910 TonB-dependent receptor, plug domain IPR037066 TonB-dependent receptor, plug domain superfamily IPR039423 TonB-dependent receptor-like IPR000531 TonB-dependent receptor-like, beta-barrel IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily IPR010105 TonB-dependent siderophore receptor IPR006129 Adhesin B IPR006128 Adhesion lipoprotein IPR006127 Periplasmic solute binding protein, ZnuA-like IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR037294 ABC transporter, BtuC-like IPR001626 ABC transporter, TroCD-like IPR029058 Alpha/Beta hydrolase fold IPR002471 Peptidase S9, serine active site IPR023302 Peptidase S9A, N-terminal domain IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain IPR002470 Peptidase S9A, prolyl oligopeptidase IPR029058 Alpha/Beta hydrolase fold IPR002471 Peptidase S9, serine active site IPR023302 Peptidase S9A, N-terminal domain IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain IPR002470 Peptidase S9A, prolyl oligopeptidase IPR011701 Major facilitator superfamily IPR020846 Major facilitator superfamily domain IPR036259 MFS transporter superfamily IPR004734 Multidrug resistance protein IPR011701 Major facilitator superfamily IPR020846 Major facilitator superfamily domain IPR036259 MFS transporter superfamily IPR004734 Multidrug resistance protein IPR023694 Agmatinase IPR005925 Agmatinase-related IPR006035 Ureohydrolase IPR023696 Ureohydrolase domain superfamily IPR020855 Ureohydrolase, manganese-binding site IPR009006 Alanine racemase/group IV decarboxylase, C-terminal IPR040634 Arginine decarboxylase, helical bundle domain IPR041128 Arginine decarboxylase, C-terminal helical IPR002985 Arginine decarboxylase IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal IPR000183 Ornithine/DAP/Arg decarboxylase IPR029066 PLP-binding barrel IPR001018 Beta-lactamase, class-B, conserved site IPR001279 Metallo-beta-lactamase IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like IPR011761 ATP-grasp fold IPR013651 ATP-grasp fold, RimK-type IPR013815 ATP-grasp fold, subdomain 1 IPR023533 Ribosomal protein S6--L-glutamate ligase RimK IPR041107 RimK, PreATP-grasp domain IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR001360 Glycoside hydrolase family 1 IPR018120 Glycoside hydrolase family 1, active site IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site IPR017853 Glycoside hydrolase superfamily IPR003593 AAA+ ATPase domain IPR011006 CheY-like superfamily IPR009057 Homeobox-like domain superfamily IPR002197 DNA binding HTH domain, Fis-type IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR001789 Signal transduction response regulator, receiver domain IPR002078 RNA polymerase sigma factor 54 interaction domain IPR025662 Sigma-54 interaction domain, ATP-binding site 1 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 IPR025944 Sigma-54 interaction domain, conserved site IPR003593 AAA+ ATPase domain IPR011006 CheY-like superfamily IPR009057 Homeobox-like domain superfamily IPR002197 DNA binding HTH domain, Fis-type IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR001789 Signal transduction response regulator, receiver domain IPR002078 RNA polymerase sigma factor 54 interaction domain IPR025662 Sigma-54 interaction domain, ATP-binding site 1 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 IPR025944 Sigma-54 interaction domain, conserved site IPR004685 Branched-chain amino acid transport system II carrier protein IPR006076 FAD dependent oxidoreductase IPR036188 FAD/NAD(P)-binding domain superfamily IPR030862 L-2-hydroxyglutarate dehydrogenase IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase IPR011166 Beta-eliminating lyase family IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR013440 Tryptophanase IPR018176 Tryptophanase, conserved site IPR004574 Alkylated DNA repair protein AlkB IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like IPR037151 Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily IPR005123 Oxoglutarate/iron-dependent dioxygenase IPR000160 GGDEF domain IPR029787 Nucleotide cyclase IPR000160 GGDEF domain IPR029787 Nucleotide cyclase IPR014133 Cryptochrome DASH IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain IPR002081 Cryptochrome/DNA photolyase class 1 IPR006050 DNA photolyase, N-terminal IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily IPR007357 Deoxyribodipyrimidine photolyase-related protein IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR006638 Elp3/MiaB/NifB IPR005839 Methylthiotransferase IPR020612 Methylthiotransferase, conserved site IPR013848 Methylthiotransferase, N-terminal IPR038135 Methylthiotransferase, N-terminal domain superfamily IPR005840 Ribosomal protein S12 methylthiotransferase RimO IPR007197 Radical SAM IPR023404 Radical SAM, alpha/beta horseshoe IPR028427 Peptide methionine sulfoxide reductase IPR002569 Peptide methionine sulphoxide reductase MsrA IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily IPR002579 Peptide methionine sulphoxide reductase MrsB IPR011057 Mss4-like superfamily IPR015946 K homology domain-like, alpha/beta IPR003718 OsmC/Ohr family IPR036102 OsmC/Ohr superfamily IPR001451 Hexapeptide repeat IPR018357 Hexapeptide transferase, conserved site IPR024688 Maltose/galactoside acetyltransferase IPR011004 Trimeric LpxA-like superfamily IPR001451 Hexapeptide repeat IPR018357 Hexapeptide transferase, conserved site IPR024688 Maltose/galactoside acetyltransferase IPR011004 Trimeric LpxA-like superfamily IPR036412 HAD-like superfamily IPR006439 HAD hydrolase, subfamily IA IPR011951 HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB IPR041492 Haloacid dehalogenase-like hydrolase IPR023214 HAD superfamily IPR023198 Phosphoglycolate phosphatase-like, domain 2 IPR041891 Carbonic anhydrase, prokaryotic-like IPR001148 Alpha carbonic anhydrase domain IPR036398 Alpha carbonic anhydrase domain superfamily IPR023561 Carbonic anhydrase, alpha-class IPR018338 Carbonic anhydrase, alpha-class, conserved site IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) IPR042117 OMPP1/FadL/TodX superfamily IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain IPR030190 Macrolide export protein MacA IPR006143 RND efflux pump, membrane fusion protein IPR003593 AAA+ ATPase domain IPR003838 ABC transporter permease protein domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR017911 ABC transporter, macrolide export, ATP-binding domain IPR025857 MacB-like periplasmic core domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR003423 Outer membrane efflux protein IPR010131 RND efflux system, outer membrane lipoprotein, NodT IPR001087 GDSL lipase/esterase IPR008265 Lipase, GDSL, active site IPR036514 SGNH hydrolase superfamily IPR000209 Peptidase S8/S53 domain IPR036852 Peptidase S8/S53 domain superfamily IPR023827 Peptidase S8, subtilisin, Asp-active site IPR022398 Peptidase S8, subtilisin, His-active site IPR023828 Peptidase S8, subtilisin, Ser-active site IPR015500 Peptidase S8, subtilisin-related IPR010259 Peptidase S8 propeptide/proteinase inhibitor I9 IPR037045 Peptidase S8 propeptide/proteinase inhibitor I9 superfamily IPR034202 Subtilisin Carlsberg-like catalytic domain IPR004703 Phosphotransferase system, sugar-specific permease component IPR016152 Phosphotransferase/anion transporter IPR002178 PTS EIIA type-2 domain IPR000843 LacI-type HTH domain IPR010982 Lambda repressor-like, DNA-binding domain superfamily IPR028082 Periplasmic binding protein-like I IPR036412 HAD-like superfamily IPR006439 HAD hydrolase, subfamily IA IPR041492 Haloacid dehalogenase-like hydrolase IPR023214 HAD superfamily IPR023198 Phosphoglycolate phosphatase-like, domain 2 IPR006323 Phosphonoacetaldehyde hydrolase IPR005814 Aminotransferase class-III IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR000192 Aminotransferase class V domain IPR012703 2-aminoethylphosphonate--pyruvate transaminase IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase IPR026045 Ferric binding protein IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR015853 ABC transporter, ferric cation import, FbpC IPR017666 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT2 IPR008995 Molybdate/tungstate binding, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily IPR000524 Transcription regulator HTH, GntR IPR017722 Phosphonate utilization transcriptional regulator PhnR IPR011663 UbiC transcription regulator-associated IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily IPR000524 Transcription regulator HTH, GntR IPR017722 Phosphonate utilization transcriptional regulator PhnR IPR011663 UbiC transcription regulator-associated IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR007488 Protein of unknown function DUF535 IPR040626 Cytosolic carboxypeptidase, N-terminal IPR000834 Peptidase M14, carboxypeptidase A IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel IPR006664 Outer membrane protein, bacterial IPR002368 Outer membrane protein, OmpA IPR006665 OmpA-like domain IPR006690 Outer membrane protein, OmpA-like, conserved site IPR036737 OmpA-like domain superfamily IPR000498 Outer membrane protein OmpA-like, transmembrane domain IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel IPR006664 Outer membrane protein, bacterial IPR002368 Outer membrane protein, OmpA IPR006665 OmpA-like domain IPR006690 Outer membrane protein, OmpA-like, conserved site IPR036737 OmpA-like domain superfamily IPR000498 Outer membrane protein OmpA-like, transmembrane domain IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR005279 Dipeptide/tripeptide permease IPR020846 Major facilitator superfamily domain IPR036259 MFS transporter superfamily IPR000109 Proton-dependent oligopeptide transporter family IPR018456 PTR2 family proton/oligopeptide symporter, conserved site IPR029009 Allosteric substrate binding domain superfamily IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form IPR005130 Serine dehydratase-like, alpha subunit IPR005131 Serine dehydratase beta chain IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site IPR002300 Aminoacyl-tRNA synthetase, class Ia IPR033709 Isoleucyl tRNA synthetase type 2, anticodon-binding domain IPR002301 Isoleucine-tRNA ligase IPR023586 Isoleucine-tRNA ligase, type 2 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain IPR023346 Lysozyme-like domain superfamily IPR000189 Prokaryotic transglycosylase, active site IPR008258 Transglycosylase SLT domain 1 IPR001444 Flagellar basal body rod protein, N-terminal IPR019776 Flagellar basal body rod protein, conserved site IPR006300 Flagellar basal-body rod protein FlgB IPR005648 Flagellar hook capping protein IPR025965 FlgD Ig-like domain IPR025963 FlgD Tudor-like domain IPR001444 Flagellar basal body rod protein, N-terminal IPR019776 Flagellar basal body rod protein, conserved site IPR020013 Flagellar hook-basal body protein, FlgE/F/G IPR010930 Flagellar basal-body/hook protein, C-terminal domain IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like IPR012834 Flagellar basal-body rod FlgG IPR000527 Flagellar L-ring protein IPR001782 Flagellar P-ring protein IPR019301 Flagellar protein FlgJ, N-terminal IPR013377 Peptidoglycan hydrolase FlgJ IPR023346 Lysozyme-like domain superfamily IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain IPR001444 Flagellar basal body rod protein, N-terminal IPR019776 Flagellar basal body rod protein, conserved site IPR010930 Flagellar basal-body/hook protein, C-terminal domain IPR002371 Flagellar hook-associated protein 1 IPR013785 Aldolase-type TIM barrel IPR000262 FMN-dependent dehydrogenase IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent IPR001763 Rhodanese-like domain IPR036873 Rhodanese-like domain superfamily IPR023695 Thiosulfate sulfurtransferase, bacterial IPR020818 GroES chaperonin family IPR037124 GroES chaperonin superfamily IPR018369 Chaperonin GroES, conserved site IPR011032 GroES-like superfamily IPR018370 Chaperonin Cpn60, conserved site IPR001844 Chaperonin Cpn60 IPR002423 Chaperonin Cpn60/TCP-1 family IPR027409 GroEL-like apical domain superfamily IPR027413 GroEL-like equatorial domain superfamily IPR027410 TCP-1-like chaperonin intermediate domain superfamily IPR004778 Homoserine/Threonine efflux protein IPR001123 Amino acid exporter protein, LeuE-type IPR005119 LysR, substrate-binding IPR037418 HTH-type transcriptional regulator TrpI, PBP2 IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR009057 Homeobox-like domain superfamily IPR001647 DNA-binding HTH domain, TetR-type IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily IPR013570 Transcription regulator YsiA, C-terminal IPR008334 5'-Nucleotidase, C-terminal IPR036907 5'-Nucleotidase, C-terminal domain superfamily IPR006146 5'-Nucleotidase, conserved site IPR006179 5'-Nucleotidase/apyrase IPR004843 Calcineurin-like phosphoesterase domain, ApaH type IPR041827 CpdB, N-terminal metallophosphatase domain IPR019931 LPXTG cell wall anchor domain IPR029052 Metallo-dependent phosphatase-like IPR013785 Aldolase-type TIM barrel IPR004136 Nitronate monooxygenase IPR013014 Phosphotransferase system, EIIC component, type 2 IPR006327 Phosphotransferase system, fructose IIC component IPR013014 Phosphotransferase system, EIIC component, type 2 IPR006327 Phosphotransferase system, fructose IIC component IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR028427 Peptide methionine sulfoxide reductase IPR002569 Peptide methionine sulphoxide reductase MsrA IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily IPR002579 Peptide methionine sulphoxide reductase MrsB IPR011057 Mss4-like superfamily IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain IPR037523 Vicinal oxygen chelate (VOC) domain IPR014036 DeoR C-terminal sensor domain IPR001034 DeoR-type HTH domain IPR037171 NagB/RpiA transferase-like IPR018356 Transcription regulator, HTH DeoR-type, conserved site IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR018028 Catalase, mono-functional, haem-containing IPR024708 Catalase active site IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 IPR011614 Catalase core domain IPR037060 Catalase core domain superfamily IPR002226 Catalase haem-binding site IPR010582 Catalase immune-responsive domain IPR020835 Catalase superfamily IPR000868 Isochorismatase-like IPR036380 Isochorismatase-like superfamily IPR041525 Nicotinate/nicotinamide phosphoribosyltransferase IPR040727 Nicotinate phosphoribosyltransferase, N-terminal domain IPR006406 Nicotinate phosphoribosyltransferase IPR007229 Nicotinate phosphoribosyltransferase family IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal IPR010583 MltA-interacting MipA IPR007298 Copper resistance lipoprotein NlpE IPR033450 NlpE, C-terminal OB domain IPR038139 NlpE, C-terminal domain superfamily IPR013324 RNA polymerase sigma factor, region 3/4-like IPR002852 Uncharacterised protein family UPF0251 IPR036388 Winged helix-like DNA-binding domain superfamily IPR041095 Elongation Factor G, domain II IPR009022 Elongation factor G, domain III IPR035647 EF-G domain III/V-like IPR035649 EFG, domain V IPR000640 Elongation factor EFG, domain V-like IPR004161 Translation elongation factor EFTu-like, domain 2 IPR031157 Tr-type G domain, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR020568 Ribosomal protein S5 domain 2-type fold IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup IPR005225 Small GTP-binding protein domain IPR000795 Transcription factor, GTP-binding domain IPR009000 Translation protein, beta-barrel domain superfamily IPR004540 Translation elongation factor EFG/EF2 IPR005517 Translation elongation factor EFG/EF2, domain IV IPR034603 Dipeptide epimerase IPR036849 Enolase-like, C-terminal domain superfamily IPR029017 Enolase-like, N-terminal IPR029065 Enolase C-terminal domain-like IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain IPR037414 Transcriptional activator protein LysR, PBP2 domain IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR009061 Putative DNA-binding domain superfamily IPR000551 MerR-type HTH domain IPR010211 Redox-sensitive transcriptional activator SoxR IPR015358 Transcription regulator MerR, DNA binding IPR030871 Cardiolipin synthase C IPR025202 Phospholipase D-like domain IPR001736 Phospholipase D/Transphosphatidylase IPR039562 Membrane fusion protein, biotin-lipoyl like domain IPR022871 Para-hydroxybenzoic acid efflux pump, subunit AaeA IPR006143 RND efflux pump, membrane fusion protein IPR039562 Membrane fusion protein, biotin-lipoyl like domain IPR022871 Para-hydroxybenzoic acid efflux pump, subunit AaeA IPR006143 RND efflux pump, membrane fusion protein IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR015853 ABC transporter, ferric cation import, FbpC IPR008995 Molybdate/tungstate binding, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR013611 Transport-associated OB, type 2 IPR000060 BCCT transporter family IPR036156 Beta-Galactosidase/glucuronidase domain superfamily IPR008979 Galactose-binding-like domain superfamily IPR040605 Glycoside hydrolase family 2, domain 5 IPR006101 Glycoside hydrolase, family 2 IPR023232 Glycoside hydrolase, family 2, active site IPR006103 Glycoside hydrolase family 2, catalytic domain IPR023230 Glycoside hydrolase, family 2, conserved site IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich IPR006104 Glycosyl hydrolases family 2, sugar binding domain IPR017853 Glycoside hydrolase superfamily IPR013783 Immunoglobulin-like fold IPR000160 GGDEF domain IPR029787 Nucleotide cyclase IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains IPR001036 Acriflavin resistance protein IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site IPR002305 Aminoacyl-tRNA synthetase, class Ic IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR002942 RNA-binding S4 domain IPR036986 RNA-binding S4 domain superfamily IPR002307 Tyrosine-tRNA ligase IPR024088 Tyrosine-tRNA ligase, bacterial-type IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 IPR013815 ATP-grasp fold, subdomain 1 IPR008279 PEP-utilising enzyme, mobile domain IPR006319 Phosphoenolpyruvate synthase IPR018274 PEP-utilising enzyme, active site IPR000121 PEP-utilising enzyme, C-terminal IPR023151 PEP-utilising enzyme, conserved site IPR036637 Phosphohistidine domain superfamily IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily IPR040442 Pyruvate kinase-like domain superfamily IPR005177 Bifunctional kinase-pyrophosphorylase IPR026530 Phosphoenolpyruvate synthase regulatory protein IPR004550 L-asparaginase, type II IPR036152 Asparaginase/glutaminase-like superfamily IPR006034 Asparaginase/glutaminase-like IPR020827 Asparaginase/glutaminase, active site 1 IPR027475 Asparaginase/glutaminase, active site 2 IPR040919 Asparaginase/glutaminase, C-terminal IPR027473 L-asparaginase, C-terminal IPR027474 L-asparaginase, N-terminal IPR037152 L-asparaginase, N-terminal domain superfamily IPR042109 Adenylosuccinate synthetase, domain 1 IPR042110 Adenylosuccinate synthetase, domain 2 IPR042111 Adenylosuccinate synthetase, domain 3 IPR001114 Adenylosuccinate synthetase IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR018636 Protein of unknown function DUF2058 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal IPR009057 Homeobox-like domain superfamily IPR018060 DNA binding HTH domain, AraC-type IPR020449 Transcription regulator HTH, AraC- type IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal IPR009057 Homeobox-like domain superfamily IPR018060 DNA binding HTH domain, AraC-type IPR020449 Transcription regulator HTH, AraC- type IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase IPR036291 NAD(P)-binding domain superfamily IPR020904 Short-chain dehydrogenase/reductase, conserved site IPR002347 Short-chain dehydrogenase/reductase SDR IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase IPR036291 NAD(P)-binding domain superfamily IPR020904 Short-chain dehydrogenase/reductase, conserved site IPR002347 Short-chain dehydrogenase/reductase SDR IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase IPR036291 NAD(P)-binding domain superfamily IPR020904 Short-chain dehydrogenase/reductase, conserved site IPR002347 Short-chain dehydrogenase/reductase SDR IPR013149 Alcohol dehydrogenase, C-terminal IPR013154 Alcohol dehydrogenase, N-terminal IPR002328 Alcohol dehydrogenase, zinc-type, conserved site IPR011032 GroES-like superfamily IPR004627 L-threonine 3-dehydrogenase IPR036291 NAD(P)-binding domain superfamily IPR020843 Polyketide synthase, enoylreductase domain IPR013785 Aldolase-type TIM barrel IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal IPR013785 Aldolase-type TIM barrel IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal IPR026463 Chitooligosaccharide synthase NodC IPR001173 Glycosyltransferase 2-like IPR029044 Nucleotide-diphospho-sugar transferases IPR004839 Aminotransferase, class I/classII IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR002491 ABC transporter periplasmic binding domain IPR009057 Homeobox-like domain superfamily IPR018060 DNA binding HTH domain, AraC-type IPR018062 HTH domain AraC-type, conserved site IPR020449 Transcription regulator HTH, AraC- type IPR008526 Inner membrane protein YedI IPR006680 Amidohydrolase-related IPR004721 Dihydroorotase homodimeric type IPR002195 Dihydroorotase, conserved site IPR032466 Metal-dependent hydrolase IPR000612 Proteolipid membrane potential modulator IPR036010 2Fe-2S ferredoxin-like superfamily IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site IPR012675 Beta-grasp domain superfamily IPR005302 Molybdenum cofactor sulfurase, C-terminal IPR005303 MOSC, N-terminal beta barrel IPR011037 Pyruvate kinase-like, insert domain superfamily IPR036010 2Fe-2S ferredoxin-like superfamily IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site IPR012675 Beta-grasp domain superfamily IPR005302 Molybdenum cofactor sulfurase, C-terminal IPR005303 MOSC, N-terminal beta barrel IPR011037 Pyruvate kinase-like, insert domain superfamily IPR022310 NAD/GMP synthase IPR003694 NAD(+) synthetase IPR022926 NH(3)-dependent NAD(+) synthetase IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR004821 Cytidyltransferase-like domain IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR015863 ABC transporter, hemin import, HmuV IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR037294 ABC transporter, BtuC-like IPR000522 ABC transporter, permease protein, BtuC-like IPR003400 Biopolymer transport protein ExbD/TolR IPR002898 MotA/TolQ/ExbB proton channel IPR003538 Gram-negative bacterial TonB protein IPR006260 TonB/TolA, C-terminal IPR037682 TonB, C-terminal IPR034505 Anaerobic coproporphyrinogen-III oxidase IPR006638 Elp3/MiaB/NifB IPR026332 Anaerobilin synthase HutW IPR007197 Radical SAM IPR023404 Radical SAM, alpha/beta horseshoe IPR010413 Intracellular heme transport protein HutX-like IPR014419 Heme utilization protein HutZ IPR011576 Pyridoxamine 5'-phosphate oxidase, putative IPR012349 FMN-binding split barrel IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site IPR038109 DNA-binding recombinase domain superfamily IPR011109 DNA-binding recombinase domain IPR006119 Resolvase, N-terminal catalytic domain IPR036162 Resolvase-like, N-terminal catalytic domain superfamily IPR025827 Recombinase zinc beta ribbon domain IPR000209 Peptidase S8/S53 domain IPR036852 Peptidase S8/S53 domain superfamily IPR023827 Peptidase S8, subtilisin, Asp-active site IPR022398 Peptidase S8, subtilisin, His-active site IPR023828 Peptidase S8, subtilisin, Ser-active site IPR015500 Peptidase S8, subtilisin-related IPR034084 Thermitase-like, domain IPR000763 Catalase-peroxidase haem IPR002016 Haem peroxidase IPR010255 Haem peroxidase superfamily IPR019794 Peroxidase, active site IPR002177 DNA-binding protein Dps IPR023188 DNA-binding protein Dps, conserved site IPR012347 Ferritin-like IPR009078 Ferritin-like superfamily IPR008331 Ferritin/DPS protein domain IPR007280 Peptidase, C-terminal, archaeal/bacterial IPR013661 Peptidase M9, collagenase, N-terminal domain IPR002169 Peptidase M9A/M9B, collagenase, bacterial IPR006046 Alpha amylase IPR006047 Glycosyl hydrolase, family 13, catalytic domain IPR017853 Glycoside hydrolase superfamily IPR006153 Cation/H+ exchanger IPR004771 K+/H+ exchanger IPR023941 Glutathione-regulated potassium-efflux system protein KefC IPR006036 Potassium uptake protein TrkA IPR038770 Sodium/solute symporter superfamily IPR036291 NAD(P)-binding domain superfamily IPR003148 Regulator of K+ conductance, N-terminal IPR003680 Flavodoxin-like fold IPR029039 Flavoprotein-like superfamily IPR003593 AAA+ ATPase domain IPR032524 ABC transporter Uup, C-terminal IPR032781 ABC-transporter extension domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily IPR029058 Alpha/Beta hydrolase fold IPR002471 Peptidase S9, serine active site IPR023302 Peptidase S9A, N-terminal domain IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain IPR002470 Peptidase S9A, prolyl oligopeptidase IPR029058 Alpha/Beta hydrolase fold IPR002471 Peptidase S9, serine active site IPR023302 Peptidase S9A, N-terminal domain IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain IPR002470 Peptidase S9A, prolyl oligopeptidase IPR039562 Membrane fusion protein, biotin-lipoyl like domain IPR022824 Multidrug resistance protein MdtA IPR006143 RND efflux pump, membrane fusion protein IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains IPR001036 Acriflavin resistance protein IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 IPR016181 Acyl-CoA N-acyltransferase IPR000182 GNAT domain IPR000160 GGDEF domain IPR029787 Nucleotide cyclase IPR012338 Beta-lactamase/transpeptidase-like IPR000871 Beta-lactamase, class-A IPR023650 Beta-lactamase, class-A active site IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains IPR001036 Acriflavin resistance protein IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA IPR036010 2Fe-2S ferredoxin-like superfamily IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site IPR009010 Aspartate decarboxylase-like domain superfamily IPR041924 Formate dehydrogenase H, N-terminal IPR006478 Formate dehydrogenase, alpha subunit IPR006657 Molybdopterin dinucleotide-binding domain IPR006656 Molybdopterin oxidoreductase IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding IPR000412 ABC-2 transporter IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily IPR019405 Lactonase, 7-bladed beta propeller IPR015943 WD40/YVTN repeat-like-containing domain superfamily IPR003719 Phenazine biosynthesis PhzF protein IPR008914 Phosphatidylethanolamine-binding protein IPR036610 PEBP-like superfamily IPR005247 YbhB/YbcL IPR004706 Arsenical-resistance protein Acr3 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 IPR038770 Sodium/solute symporter superfamily IPR016152 Phosphotransferase/anion transporter IPR002178 PTS EIIA type-2 domain IPR036095 PTS system IIB component-like superfamily IPR013011 Phosphotransferase system, EIIB component, type 2 IPR003501 Phosphotransferase system, EIIB component, type 2/3 IPR029503 Phosphotransferase system EIIB component, mannitol-specific IPR003352 Phosphotransferase system, EIIC IPR013014 Phosphotransferase system, EIIC component, type 2 IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC IPR013149 Alcohol dehydrogenase, C-terminal IPR013154 Alcohol dehydrogenase, N-terminal IPR011032 GroES-like superfamily IPR036291 NAD(P)-binding domain superfamily IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR023710 Probable phosphatase YcdX IPR003141 Polymerase/histidinol phosphatase, N-terminal IPR016195 Polymerase/histidinol phosphatase-like IPR018227 Amino acid/polyamine transporter 2 IPR013059 Tryptophan/tyrosine transporter IPR004090 Chemotaxis methyl-accepting receptor IPR033479 Double Cache domain 1 IPR003660 HAMP domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR029151 Periplasmic sensor-like domain superfamily IPR000727 Target SNARE coiled-coil homology domain IPR004090 Chemotaxis methyl-accepting receptor IPR033479 Double Cache domain 1 IPR003660 HAMP domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR029151 Periplasmic sensor-like domain superfamily IPR000727 Target SNARE coiled-coil homology domain IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain IPR001633 EAL domain IPR035919 EAL domain superfamily IPR000160 GGDEF domain IPR029787 Nucleotide cyclase IPR001610 PAC motif IPR000014 PAS domain IPR000700 PAS-associated, C-terminal IPR035965 PAS domain superfamily IPR013656 PAS fold-4 IPR013655 PAS fold-3 IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR000620 EamA domain IPR033900 Porin domain, Gram-negative type IPR023614 Porin domain superfamily IPR001897 Porin, gammaproteobacterial IPR001702 Porin, Gram-negative type IPR013793 Porin, Gram-negative type, conserved site IPR011234 Fumarylacetoacetase-like, C-terminal IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily IPR009057 Homeobox-like domain superfamily IPR018060 DNA binding HTH domain, AraC-type IPR020449 Transcription regulator HTH, AraC- type IPR002429 Cytochrome c oxidase subunit II-like C-terminal IPR034210 Cytochrome c oxidase subunit 2, C-terminal IPR001505 Copper centre Cu(A) IPR008972 Cupredoxin IPR014222 Cytochrome c oxidase, subunit II IPR011759 Cytochrome C oxidase subunit II, transmembrane domain IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily IPR023616 Cytochrome c oxidase-like, subunit I domain IPR036927 Cytochrome c oxidase-like, subunit I superfamily IPR000883 Cytochrome c oxidase subunit I IPR023615 Cytochrome c oxidase, subunit I, copper-binding site IPR033944 Cytochrome c oxidase subunit I domain IPR014241 Cytochrome c oxidase, subunit I bacterial type IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain superfamily IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 IPR024791 Cytochrome c oxidase subunit III IPR033945 Cytochrome c oxidase subunit III domain IPR000298 Cytochrome c oxidase subunit III-like IPR035973 Cytochrome c oxidase subunit III-like superfamily IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle IPR003780 COX15/CtaA family IPR023754 Heme A synthase, type 2 IPR006369 Protohaem IX farnesyltransferase IPR000537 UbiA prenyltransferase family IPR030470 UbiA prenyltransferase conserved site IPR012156 Cold shock, CspA IPR011129 Cold shock domain IPR019844 Cold-shock (CSD) domain IPR002059 Cold-shock protein, DNA-binding IPR012340 Nucleic acid-binding, OB-fold IPR005589 Alternative ribosome-rescue factor A IPR004090 Chemotaxis methyl-accepting receptor IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR001610 PAC motif IPR000014 PAS domain IPR000700 PAS-associated, C-terminal IPR035965 PAS domain superfamily IPR013655 PAS fold-3 IPR004090 Chemotaxis methyl-accepting receptor IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR001610 PAC motif IPR000014 PAS domain IPR000700 PAS-associated, C-terminal IPR035965 PAS domain superfamily IPR013655 PAS fold-3 IPR000160 GGDEF domain IPR029787 Nucleotide cyclase IPR003593 AAA+ ATPase domain IPR003838 ABC transporter permease protein domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR017911 ABC transporter, macrolide export, ATP-binding domain IPR025857 MacB-like periplasmic core domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR003593 AAA+ ATPase domain IPR003838 ABC transporter permease protein domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR017911 ABC transporter, macrolide export, ATP-binding domain IPR025857 MacB-like periplasmic core domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR004090 Chemotaxis methyl-accepting receptor IPR003660 HAMP domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR033480 Single Cache domain 2 IPR002177 DNA-binding protein Dps IPR023188 DNA-binding protein Dps, conserved site IPR012347 Ferritin-like IPR009078 Ferritin-like superfamily IPR008331 Ferritin/DPS protein domain IPR011042 Six-bladed beta-propeller, TolB-like IPR012938 Glucose/Sorbosone dehydrogenase IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA IPR018211 Alcohol dehydrogenase, iron-type, conserved site IPR039697 Iron-type alcohol dehydrogenase-like IPR029062 Class I glutamine amidotransferase-like IPR026041 Glyoxalase ElbB IPR000620 EamA domain IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR010233 Ubiquinone biosynthesis O-methyltransferase IPR005914 Acetoacetyl-CoA synthase IPR025110 AMP-binding enzyme, C-terminal domain IPR020845 AMP-binding, conserved site IPR000873 AMP-dependent synthetase/ligase IPR042099 AMP-dependent synthetase-like superfamily IPR005914 Acetoacetyl-CoA synthase IPR025110 AMP-binding enzyme, C-terminal domain IPR020845 AMP-binding, conserved site IPR000873 AMP-dependent synthetase/ligase IPR042099 AMP-dependent synthetase-like superfamily IPR001273 Aromatic amino acid hydroxylase IPR018301 Aromatic amino acid hydroxylase, iron/copper binding site IPR036951 Aromatic amino acid hydroxylase superfamily IPR036329 Aromatic amino acid monoxygenase, C-terminal domain superfamily IPR019774 Aromatic amino acid hydroxylase, C-terminal IPR005960 Phenylalanine-4-hydroxylase, monomeric form IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily IPR001533 Pterin 4 alpha carbinolamine dehydratase IPR024530 Putative quorum-sensing-regulated virulence factor IPR018668 DNA-binding protein VF530-like IPR036361 SAP domain superfamily IPR018668 DNA-binding protein VF530-like IPR036361 SAP domain superfamily IPR001926 Pyridoxal-phosphate dependent enzyme IPR006653 Tryptophan synthase, beta chain, conserved site IPR006654 Tryptophan synthase, beta chain IPR023026 Tryptophan synthase beta chain/beta chain-like IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme IPR000816 Peptidase C15, pyroglutamyl peptidase I IPR016125 Peptidase C15, pyroglutamyl peptidase I-like IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily IPR029762 Pyroglutamyl peptidase I, bacterial-type IPR033694 Pyroglutamyl peptidase I, Cys active site IPR033693 Pyroglutamyl peptidase I, Glu active site IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal IPR003495 CobW/HypB/UreG, nucleotide-binding domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain IPR001633 EAL domain IPR035919 EAL domain superfamily IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR017850 Alkaline-phosphatase-like, core domain superfamily IPR024607 Sulfatase, conserved site IPR000917 Sulfatase, N-terminal IPR023885 4Fe4S-binding SPASM domain IPR013785 Aldolase-type TIM barrel IPR034491 Anaerobic Ser-type sulfatase-maturating enzyme IPR007197 Radical SAM IPR029069 HotDog domain superfamily IPR002539 MaoC-like dehydratase domain IPR039375 Nodulation protein N-like IPR024370 PBP domain IPR011129 Cold shock domain IPR012340 Nucleic acid-binding, OB-fold IPR013223 Ribonuclease B, N-terminal OB domain IPR011804 Ribonuclease II IPR001900 Ribonuclease II/R IPR022966 Ribonuclease II/R, conserved site IPR004476 Ribonuclease II/ribonuclease R IPR003029 S1 domain IPR034415 CsdA, RNA recognition motif IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain IPR011545 DEAD/DEAH box helicase domain IPR028618 ATP-dependent RNA helicase DeaD IPR014001 Helicase superfamily 1/2, ATP-binding domain IPR001650 Helicase, C-terminal IPR012677 Nucleotide-binding alpha-beta plait domain superfamily IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site IPR014014 RNA helicase, DEAD-box type, Q motif IPR001633 EAL domain IPR035919 EAL domain superfamily IPR000160 GGDEF domain IPR029787 Nucleotide cyclase IPR000014 PAS domain IPR035965 PAS domain superfamily IPR004372 Acetate/propionate kinase IPR000890 Aliphatic acid kinase, short-chain IPR023865 Aliphatic acid kinase, short-chain, conserved site IPR019275 Protein of unknown function DUF2301 IPR013785 Aldolase-type TIM barrel IPR000138 Hydroxymethylglutaryl-CoA lyase, active site IPR000891 Pyruvate carboxyltransferase IPR013785 Aldolase-type TIM barrel IPR000138 Hydroxymethylglutaryl-CoA lyase, active site IPR000891 Pyruvate carboxyltransferase IPR029045 ClpP/crotonase-like domain superfamily IPR018376 Enoyl-CoA hydratase/isomerase, conserved site IPR001753 Enoyl-CoA hydratase/isomerase IPR014748 Enoyl-CoA hydratase, C-terminal IPR034733 Acetyl-CoA carboxylase IPR029045 ClpP/crotonase-like domain superfamily IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal IPR034733 Acetyl-CoA carboxylase IPR029045 ClpP/crotonase-like domain superfamily IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal IPR006089 Acyl-CoA dehydrogenase, conserved site IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain IPR036250 Acyl-CoA dehydrogenase-like, C-terminal IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily IPR006089 Acyl-CoA dehydrogenase, conserved site IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain IPR036250 Acyl-CoA dehydrogenase-like, C-terminal IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily IPR011789 Cu(I)-responsive transcriptional regulator IPR009061 Putative DNA-binding domain superfamily IPR000551 MerR-type HTH domain IPR015358 Transcription regulator MerR, DNA binding IPR011789 Cu(I)-responsive transcriptional regulator IPR009061 Putative DNA-binding domain superfamily IPR000551 MerR-type HTH domain IPR015358 Transcription regulator MerR, DNA binding IPR011789 Cu(I)-responsive transcriptional regulator IPR009061 Putative DNA-binding domain superfamily IPR000551 MerR-type HTH domain IPR015358 Transcription regulator MerR, DNA binding IPR002155 Thiolase IPR016039 Thiolase-like IPR020615 Thiolase, acyl-enzyme intermediate active site IPR020610 Thiolase, active site IPR020617 Thiolase, C-terminal IPR020613 Thiolase, conserved site IPR020616 Thiolase, N-terminal IPR002155 Thiolase IPR016039 Thiolase-like IPR020615 Thiolase, acyl-enzyme intermediate active site IPR020610 Thiolase, active site IPR020617 Thiolase, C-terminal IPR020613 Thiolase, conserved site IPR020616 Thiolase, N-terminal IPR016161 Aldehyde/histidinol dehydrogenase IPR016163 Aldehyde dehydrogenase, C-terminal IPR016160 Aldehyde dehydrogenase, cysteine active site IPR016162 Aldehyde dehydrogenase, N-terminal IPR015590 Aldehyde dehydrogenase domain IPR010061 Methylmalonate-semialdehyde dehydrogenase IPR016161 Aldehyde/histidinol dehydrogenase IPR016163 Aldehyde dehydrogenase, C-terminal IPR016160 Aldehyde dehydrogenase, cysteine active site IPR016162 Aldehyde dehydrogenase, N-terminal IPR015590 Aldehyde dehydrogenase domain IPR010061 Methylmalonate-semialdehyde dehydrogenase IPR006089 Acyl-CoA dehydrogenase, conserved site IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain IPR036250 Acyl-CoA dehydrogenase-like, C-terminal IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily IPR029045 ClpP/crotonase-like domain superfamily IPR018376 Enoyl-CoA hydratase/isomerase, conserved site IPR001753 Enoyl-CoA hydratase/isomerase IPR014748 Enoyl-CoA hydratase, C-terminal IPR029045 ClpP/crotonase-like domain superfamily IPR018376 Enoyl-CoA hydratase/isomerase, conserved site IPR001753 Enoyl-CoA hydratase/isomerase IPR014748 Enoyl-CoA hydratase, C-terminal IPR029045 ClpP/crotonase-like domain superfamily IPR018376 Enoyl-CoA hydratase/isomerase, conserved site IPR001753 Enoyl-CoA hydratase/isomerase IPR014748 Enoyl-CoA hydratase, C-terminal IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily IPR013328 6-phosphogluconate dehydrogenase, domain 2 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding IPR011548 3-hydroxyisobutyrate dehydrogenase IPR015815 3-hydroxyisobutyrate dehydrogenase-related IPR036291 NAD(P)-binding domain superfamily IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily IPR013328 6-phosphogluconate dehydrogenase, domain 2 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding IPR011548 3-hydroxyisobutyrate dehydrogenase IPR015815 3-hydroxyisobutyrate dehydrogenase-related IPR036291 NAD(P)-binding domain superfamily IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase IPR036291 NAD(P)-binding domain superfamily IPR020904 Short-chain dehydrogenase/reductase, conserved site IPR002347 Short-chain dehydrogenase/reductase SDR IPR002429 Cytochrome c oxidase subunit II-like C-terminal IPR010514 COX aromatic rich motif IPR008972 Cupredoxin IPR034227 Ubiquinol oxidase subunit 2, cupredoxin domain IPR011759 Cytochrome C oxidase subunit II, transmembrane domain IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily IPR006333 Cytochrome o ubiquinol oxidase subunit II IPR023616 Cytochrome c oxidase-like, subunit I domain IPR036927 Cytochrome c oxidase-like, subunit I superfamily IPR000883 Cytochrome c oxidase subunit I IPR023615 Cytochrome c oxidase, subunit I, copper-binding site IPR014207 Cytochrome o ubiquinol oxidase, subunit I IPR024791 Cytochrome c oxidase subunit III IPR000298 Cytochrome c oxidase subunit III-like IPR035973 Cytochrome c oxidase subunit III-like superfamily IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle IPR014206 Cytochrome o ubiquinol oxidase, subunit III IPR033946 Ubiquinol oxidase subunit III domain IPR006369 Protohaem IX farnesyltransferase IPR000537 UbiA prenyltransferase family IPR030470 UbiA prenyltransferase conserved site IPR013785 Aldolase-type TIM barrel IPR023663 NADPH dehydrogenase IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal IPR012951 Berberine/berberine-like IPR016166 FAD-binding domain, PCMH-type IPR036318 FAD-binding, type PCMH-like superfamily IPR016167 FAD-binding, type PCMH, subdomain 1 IPR016169 FAD-binding, type PCMH, subdomain 2 IPR016164 FAD-linked oxidase-like, C-terminal IPR006094 FAD linked oxidase, N-terminal IPR006093 Oxygen oxidoreductase covalent FAD-binding site IPR003593 AAA+ ATPase domain IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR001320 Ionotropic glutamate receptor IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter IPR018313 Solute-binding protein family 3, conserved site IPR001638 Solute-binding protein family 3/N-terminal domain of MltF IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain IPR040156 Electron transfer flavoprotein-ubiquinone oxidoreductase IPR036188 FAD/NAD(P)-binding domain superfamily IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain IPR040156 Electron transfer flavoprotein-ubiquinone oxidoreductase IPR036188 FAD/NAD(P)-binding domain superfamily IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain IPR040156 Electron transfer flavoprotein-ubiquinone oxidoreductase IPR036188 FAD/NAD(P)-binding domain superfamily IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain IPR000089 Biotin/lipoyl attachment IPR023213 Chloramphenicol acetyltransferase-like domain superfamily IPR036625 E3-binding domain superfamily IPR004167 Peripheral subunit-binding domain IPR011053 Single hybrid motif IPR029061 Thiamin diphosphate-binding fold IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II IPR005475 Transketolase-like, pyrimidine-binding domain IPR033248 Transketolase, C-terminal domain IPR001017 Dehydrogenase, E1 component IPR017596 Pyruvate dehydrogenase E1 component subunit alpha/BCKADH E1-alpha IPR029061 Thiamin diphosphate-binding fold IPR018181 Heat shock protein 70, conserved site IPR013126 Heat shock protein 70 family IPR042054 YegD-like IPR007410 Copper chaperone PCuAC IPR036182 Copper chaperone PCuAC superfamily IPR002491 ABC transporter periplasmic binding domain IPR033870 FatB domain IPR037294 ABC transporter, BtuC-like IPR000522 ABC transporter, permease protein, BtuC-like IPR037294 ABC transporter, BtuC-like IPR000522 ABC transporter, permease protein, BtuC-like IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR011789 Cu(I)-responsive transcriptional regulator IPR009061 Putative DNA-binding domain superfamily IPR000551 MerR-type HTH domain IPR039426 Vitamin B12 transporter BtuB-like IPR012910 TonB-dependent receptor, plug domain IPR037066 TonB-dependent receptor, plug domain superfamily IPR000531 TonB-dependent receptor-like, beta-barrel IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily IPR039426 Vitamin B12 transporter BtuB-like IPR012910 TonB-dependent receptor, plug domain IPR037066 TonB-dependent receptor, plug domain superfamily IPR000531 TonB-dependent receptor-like, beta-barrel IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily IPR010019 Integral membrane protein, YccS IPR010020 Integral membrane protein, YccS/YhfK IPR032692 Integral membrane protein YccS, N-terminal IPR014017 UvrD-like DNA helicase, C-terminal IPR000212 DNA helicase, UvrD/REP type IPR022161 DNA helicase IV, N-terminal domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR014016 UvrD-like helicase, ATP-binding domain IPR034739 UvrD/AddA helicase, N-terminal IPR004363 Methylglyoxal synthase IPR018148 Methylglyoxal synthase, active site IPR011607 Methylglyoxal synthase-like domain IPR036914 Methylglyoxal synthase-like domain superfamily IPR001761 Periplasmic binding protein/LacI sugar binding domain IPR028082 Periplasmic binding protein-like I IPR014301 TMAO reductase system, periplasmic protein TorT IPR011006 CheY-like superfamily IPR003660 HAMP domain IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR036641 HPT domain superfamily IPR037952 Sensor histidine kinase TorS, sensor domain IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain IPR001789 Signal transduction response regulator, receiver domain IPR038188 TorS, sensor domain superfamily IPR017850 Alkaline-phosphatase-like, core domain superfamily IPR032158 Domain of unknown function DUF4994 IPR024607 Sulfatase, conserved site IPR000917 Sulfatase, N-terminal IPR017850 Alkaline-phosphatase-like, core domain superfamily IPR024607 Sulfatase, conserved site IPR000917 Sulfatase, N-terminal IPR017850 Alkaline-phosphatase-like, core domain superfamily IPR024607 Sulfatase, conserved site IPR000917 Sulfatase, N-terminal IPR023885 4Fe4S-binding SPASM domain IPR013785 Aldolase-type TIM barrel IPR034491 Anaerobic Ser-type sulfatase-maturating enzyme IPR007197 Radical SAM IPR023885 4Fe4S-binding SPASM domain IPR013785 Aldolase-type TIM barrel IPR034491 Anaerobic Ser-type sulfatase-maturating enzyme IPR007197 Radical SAM IPR011703 ATPase, AAA-3 IPR041628 ChlI/MoxR, AAA lid domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR011703 ATPase, AAA-3 IPR041628 ChlI/MoxR, AAA lid domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR033881 von Willebrand factor domain BatA-type IPR002035 von Willebrand factor, type A IPR036465 von Willebrand factor A-like domain superfamily IPR016192 APOBEC/CMP deaminase, zinc-binding IPR002125 Cytidine and deoxycytidylate deaminase domain IPR016193 Cytidine deaminase-like IPR024072 Dihydrofolate reductase-like domain superfamily IPR004794 Riboflavin biosynthesis protein RibD IPR011549 Riboflavin-specific deaminase, C-terminal IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal IPR005218 Diacylglycerol/lipid kinase IPR001206 Diacylglycerol kinase, catalytic domain IPR022433 Lipid kinase YegS IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily IPR036700 Bacterial OB-fold superfamily IPR005220 Bacterial OB-fold IPR016052 Bacteriophage 933W, L0136 IPR033315 Fanconi-associated nuclease 1-like IPR040603 Fanconi-associated nuclease 1, SAP domain IPR011856 tRNA endonuclease-like domain superfamily IPR014883 VRR-NUC domain IPR022919 Peptidase M48, protease HtpX, putative IPR001915 Peptidase M48 IPR023353 LemA-like domain superfamily IPR007156 LemA IPR004669 C4-dicarboxylate anaerobic carrier IPR018385 C4-dicarboxylate anaerobic carrier-like IPR006464 N-acetyltransferase RimI/Ard1 IPR016181 Acyl-CoA N-acyltransferase IPR000905 Gcp-like domain IPR000182 GNAT domain IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB IPR011006 CheY-like superfamily IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR001789 Signal transduction response regulator, receiver domain IPR004839 Aminotransferase, class I/classII IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain IPR023179 GTP-binding protein, orthogonal bundle domain superfamily IPR019991 GTP-binding protein, ribosome biogenesis IPR006073 GTP binding domain IPR016478 GTPase, MTG1 IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR007280 Peptidase, C-terminal, archaeal/bacterial IPR013661 Peptidase M9, collagenase, N-terminal domain IPR002169 Peptidase M9A/M9B, collagenase, bacterial IPR009057 Homeobox-like domain superfamily IPR018060 DNA binding HTH domain, AraC-type IPR018062 HTH domain AraC-type, conserved site IPR020449 Transcription regulator HTH, AraC- type IPR009057 Homeobox-like domain superfamily IPR018060 DNA binding HTH domain, AraC-type IPR018062 HTH domain AraC-type, conserved site IPR020449 Transcription regulator HTH, AraC- type IPR005119 LysR, substrate-binding IPR020890 Transcription regulator HTH, HdfR IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR011006 CheY-like superfamily IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR030856 Sensor histidine kinase RcsC IPR038388 RcsC, C-terminal domain superfamily IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR019017 Signal transduction histidine kinase RcsC, alpha-beta loop, C-terminal IPR001789 Signal transduction response regulator, receiver domain IPR001633 EAL domain IPR035919 EAL domain superfamily IPR000160 GGDEF domain IPR005330 MHYT domain IPR029787 Nucleotide cyclase IPR000014 PAS domain IPR035965 PAS domain superfamily IPR001633 EAL domain IPR035919 EAL domain superfamily IPR000160 GGDEF domain IPR005330 MHYT domain IPR029787 Nucleotide cyclase IPR000014 PAS domain IPR035965 PAS domain superfamily IPR001633 EAL domain IPR035919 EAL domain superfamily IPR000160 GGDEF domain IPR005330 MHYT domain IPR029787 Nucleotide cyclase IPR000014 PAS domain IPR035965 PAS domain superfamily IPR011006 CheY-like superfamily IPR016032 Signal transduction response regulator, C-terminal effector IPR001789 Signal transduction response regulator, receiver domain IPR000792 Transcription regulator LuxR, C-terminal IPR036388 Winged helix-like DNA-binding domain superfamily IPR039435 Diguanylate cyclase DosC, globin sensor domain IPR000160 GGDEF domain IPR009050 Globin-like superfamily IPR012292 Globin/Protoglobin IPR029787 Nucleotide cyclase IPR011006 CheY-like superfamily IPR001789 Signal transduction response regulator, receiver domain IPR000792 Transcription regulator LuxR, C-terminal IPR000620 EamA domain IPR004626 RarD protein IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase IPR011096 FTP domain IPR025711 PepSY domain IPR007280 Peptidase, C-terminal, archaeal/bacterial IPR023612 Peptidase M4 IPR027268 Peptidase M4/M1, CTD superfamily IPR001570 Peptidase M4, C-terminal IPR013856 Peptidase M4 domain IPR000390 Small multidrug resistance protein family IPR000620 EamA domain IPR016161 Aldehyde/histidinol dehydrogenase IPR016163 Aldehyde dehydrogenase, C-terminal IPR029510 Aldehyde dehydrogenase, glutamic acid active site IPR016162 Aldehyde dehydrogenase, N-terminal IPR015590 Aldehyde dehydrogenase domain IPR012394 Aldehyde dehydrogenase NAD(P)-dependent IPR030676 Citrate carrier CitT-related IPR001898 Solute carrier family 13 IPR011006 CheY-like superfamily IPR024187 Signal transduction response regulator, citrate/malate metabolism IPR001789 Signal transduction response regulator, receiver domain IPR028141 Transcriptional regulator IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site IPR013785 Aldolase-type TIM barrel IPR024188 Glutamate synthase large subunit-like protein IPR002932 Glutamate synthase domain IPR000763 Catalase-peroxidase haem IPR002016 Haem peroxidase IPR010255 Haem peroxidase superfamily IPR019794 Peroxidase, active site IPR011979 Conserved hypothetical protein CHP02293 IPR024467 Domain of unknown function DUF2384 IPR002656 Acyltransferase 3 IPR036514 SGNH hydrolase superfamily IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain IPR004361 Glyoxalase I IPR018146 Glyoxalase I, conserved site IPR037523 Vicinal oxygen chelate (VOC) domain IPR000644 CBS domain IPR006668 Magnesium transporter, MgtE intracellular domain IPR038076 MgtE, N-terminal domain superfamily IPR038048 Magnesium transporter MgtE, transmembrane domain IPR006669 Magnesium transporter MgtE IPR006667 SLC41 divalent cation transporters, integral membrane domain IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily IPR023635 Peptide deformylase IPR036821 Peptide deformylase superfamily IPR003187 Phospholipase A1 IPR036541 Phospholipase A1 superfamily IPR003593 AAA+ ATPase domain IPR011527 ABC transporter type 1, transmembrane domain IPR036640 ABC transporter type 1, transmembrane domain superfamily IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain IPR040982 DNA polymerase III alpha subunit finger domain IPR024754 DNA polymerase III polC-like, N-terminal domain II IPR029460 DNA polymerase, helix-hairpin-helix motif IPR006054 DNA polymerase III epsilon subunit, exonuclease domain IPR013520 Exonuclease, RNase T/DNA polymerase III IPR012340 Nucleic acid-binding, OB-fold IPR004013 PHP domain IPR003141 Polymerase/histidinol phosphatase, N-terminal IPR006308 DNA polymerase III, alpha subunit, Gram-positive type IPR012337 Ribonuclease H-like superfamily IPR036397 Ribonuclease H superfamily IPR034733 Acetyl-CoA carboxylase IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit IPR029045 ClpP/crotonase-like domain superfamily IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal IPR041010 Acetyl-coA carboxylase zinc finger domain IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR023603 Threonine aldolase IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR023603 Threonine aldolase IPR003437 Glycine dehydrogenase (decarboxylating) IPR020581 Glycine cleavage system P protein IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR000089 Biotin/lipoyl attachment IPR002930 Glycine cleavage system H-protein IPR033753 Glycine cleavage system H-protein/Simiate IPR017453 Glycine cleavage system H-protein, subgroup IPR011053 Single hybrid motif IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR001085 Serine hydroxymethyltransferase IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site IPR039429 Serine hydroxymethyltransferase-like domain IPR006223 Glycine cleavage system T protein IPR022903 Glycine cleavage system T protein, bacteria IPR028896 Aminomethyltransferase-like IPR013977 Glycine cleavage T-protein, C-terminal barrel domain IPR006222 Aminomethyltransferase, folate-binding domain IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 IPR036095 PTS system IIB component-like superfamily IPR013011 Phosphotransferase system, EIIB component, type 2 IPR003501 Phosphotransferase system, EIIB component, type 2/3 IPR003352 Phosphotransferase system, EIIC IPR013014 Phosphotransferase system, EIIC component, type 2 IPR003353 Phosphotransferase system, fructose-specific IIB subunit IPR006327 Phosphotransferase system, fructose IIC component IPR022463 Fructose 1-phosphate kinase IPR002173 Carbohydrate/puine kinase, PfkB, conserved site IPR011611 Carbohydrate kinase PfkB IPR029056 Ribokinase-like IPR017583 Tagatose/fructose phosphokinase IPR000032 Phosphocarrier protein HPr-like IPR035895 HPr-like superfamily IPR016152 Phosphotransferase/anion transporter IPR002178 PTS EIIA type-2 domain IPR001020 Phosphotransferase system, HPr histidine phosphorylation site IPR002114 Phosphotransferase system, HPr serine phosphorylation site IPR012781 D-fructose-responsive transcription factor IPR000843 LacI-type HTH domain IPR010982 Lambda repressor-like, DNA-binding domain superfamily IPR001761 Periplasmic binding protein/LacI sugar binding domain IPR028082 Periplasmic binding protein-like I IPR001633 EAL domain IPR035919 EAL domain superfamily IPR003018 GAF domain IPR029016 GAF-like domain superfamily IPR000160 GGDEF domain IPR029787 Nucleotide cyclase IPR001610 PAC motif IPR000014 PAS domain IPR000700 PAS-associated, C-terminal IPR035965 PAS domain superfamily IPR013767 PAS fold IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR001320 Ionotropic glutamate receptor IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter IPR018313 Solute-binding protein family 3, conserved site IPR001638 Solute-binding protein family 3/N-terminal domain of MltF IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR011701 Major facilitator superfamily IPR020846 Major facilitator superfamily domain IPR036259 MFS transporter superfamily IPR021159 Glycerate/sugar phosphate transporter, conserved site IPR000849 Sugar phosphate transporter IPR003660 HAMP domain IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR017116 Signal transduction histidine kinase, PgtB IPR011006 CheY-like superfamily IPR009057 Homeobox-like domain superfamily IPR002197 DNA binding HTH domain, Fis-type IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR001789 Signal transduction response regulator, receiver domain IPR002078 RNA polymerase sigma factor 54 interaction domain IPR025944 Sigma-54 interaction domain, conserved site IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA IPR018211 Alcohol dehydrogenase, iron-type, conserved site IPR009057 Homeobox-like domain superfamily IPR018060 DNA binding HTH domain, AraC-type IPR009594 Transcription regulator HTH, AraC, N-terminal IPR009057 Homeobox-like domain superfamily IPR018060 DNA binding HTH domain, AraC-type IPR009594 Transcription regulator HTH, AraC, N-terminal IPR011831 Glucose-1-phosphate adenylyltransferase IPR005836 ADP-glucose pyrophosphorylase, conserved site IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial IPR005835 Nucleotidyl transferase domain IPR029044 Nucleotide-diphospho-sugar transferases IPR011004 Trimeric LpxA-like superfamily IPR000559 Formate-tetrahydrofolate ligase, FTHFS IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR011006 CheY-like superfamily IPR021800 Domain of unknown function DUF3369 IPR003607 HD/PDEase domain IPR037522 HD-GYP domain IPR001789 Signal transduction response regulator, receiver domain IPR036412 HAD-like superfamily IPR006439 HAD hydrolase, subfamily IA IPR041492 Haloacid dehalogenase-like hydrolase IPR023214 HAD superfamily IPR023198 Phosphoglycolate phosphatase-like, domain 2 IPR037512 Phosphoglycolate phosphatase, prokaryotic IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR029151 Periplasmic sensor-like domain superfamily IPR007431 Acyl carrier protein phosphodiesterase IPR023491 Acyl carrier protein phosphodiesterase, gammaproteobacteria IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain IPR001633 EAL domain IPR035919 EAL domain superfamily IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase IPR016174 Di-haem cytochrome, transmembrane IPR007372 Lipid/polyisoprenoid-binding, YceI-like IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily IPR023480 Uncharacterised protein family UPF0312/YceI IPR009476 Protein of unknown function DUF1097 IPR022602 Protein of unknown function DUF2813 IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR006171 TOPRIM domain IPR034139 OLD protein-like, TOPRIM domain IPR008334 5'-Nucleotidase, C-terminal IPR036907 5'-Nucleotidase, C-terminal domain superfamily IPR006146 5'-Nucleotidase, conserved site IPR006179 5'-Nucleotidase/apyrase IPR004843 Calcineurin-like phosphoesterase domain, ApaH type IPR029052 Metallo-dependent phosphatase-like IPR006420 NAD pyrophosphatase/5-nucleotidase NadN IPR005496 Integral membrane protein TerC IPR022369 Integral membrane protein TerC, riboswitch-linked IPR029058 Alpha/Beta hydrolase fold IPR020009 Extracellular lipase, Pla-1/cef family IPR025920 Bacterial virulence factor lipase, N-terminal domain IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) IPR042117 OMPP1/FadL/TodX superfamily IPR029069 HotDog domain superfamily IPR003736 Phenylacetic acid degradation-related domain IPR006683 Thioesterase domain IPR039424 Solute-binding protein family 5 IPR000914 Solute-binding protein family 5 domain IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain IPR023767 Transcriptional regulator SgrR IPR012724 Chaperone DnaJ IPR002939 Chaperone DnaJ, C-terminal IPR001623 DnaJ domain IPR018253 DnaJ domain, conserved site IPR008971 HSP40/DnaJ peptide-binding IPR001305 Heat shock protein DnaJ, cysteine-rich domain IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily IPR036869 Chaperone J-domain superfamily IPR024906 Enoyl reductase FAD binding domain IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative IPR036291 NAD(P)-binding domain superfamily IPR010758 Trans-2-enoyl-CoA reductase IPR008265 Lipase, GDSL, active site IPR013830 SGNH hydrolase-type esterase domain IPR036514 SGNH hydrolase superfamily IPR038766 Membrane component of ABC transporter, predicted IPR006076 FAD dependent oxidoreductase IPR036188 FAD/NAD(P)-binding domain superfamily IPR008471 MnmC-like methyltransferase IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal IPR003778 Carboxyltransferase domain, subdomain A and B IPR029000 Cyclophilin-like domain superfamily IPR003833 Carboxyltransferase domain, subdomain C and D IPR029000 Cyclophilin-like domain superfamily IPR010016 KipI family IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel IPR005501 LamB/YcsF/PxpA-like IPR001633 EAL domain IPR035919 EAL domain superfamily IPR000160 GGDEF domain IPR007895 MASE1 IPR029787 Nucleotide cyclase IPR001610 PAC motif IPR000014 PAS domain IPR000700 PAS-associated, C-terminal IPR035965 PAS domain superfamily IPR013656 PAS fold-4 IPR013655 PAS fold-3 IPR016040 NAD(P)-binding domain IPR036291 NAD(P)-binding domain superfamily IPR005886 UDP-glucose 4-epimerase IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR016181 Acyl-CoA N-acyltransferase IPR011761 ATP-grasp fold IPR013815 ATP-grasp fold, subdomain 1 IPR003781 CoA-binding IPR000182 GNAT domain IPR036291 NAD(P)-binding domain superfamily IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain IPR016102 Succinyl-CoA synthetase-like IPR011761 ATP-grasp fold IPR013815 ATP-grasp fold, subdomain 1 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site IPR005905 D-alanine--D-alanine ligase IPR011095 D-alanine--D-alanine ligase, C-terminal IPR011127 D-alanine--D-alanine ligase, N-terminal domain IPR016185 Pre-ATP-grasp domain superfamily IPR001950 SUI1 domain IPR005872 Archaeal/bacterial translation initiation factor SUI1 IPR036877 SUI1 domain superfamily IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR006015 Universal stress protein A family IPR006016 UspA IPR005371 Uncharacterised protein family UPF0181 IPR011006 CheY-like superfamily IPR001867 OmpR/PhoB-type DNA-binding domain IPR001789 Signal transduction response regulator, receiver domain IPR039420 Transcriptional regulatory protein WalR-like IPR036388 Winged helix-like DNA-binding domain superfamily IPR029035 DHS-like NAD/FAD-binding domain superfamily IPR012136 NADP transhydrogenase, beta subunit IPR034300 NADP transhydrogenase beta-like domain IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain IPR036291 NAD(P)-binding domain superfamily IPR026255 NAD(P) transhydrogenase, alpha subunit IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR015852 ABC transporter, molybdenum import, ModC IPR008995 Molybdate/tungstate binding, C-terminal IPR011868 Molybdate ABC transporter, ATP-binding protein IPR004606 Molybdenum-pterin binding IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR005116 Transport-associated OB, type 1 IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR011867 Molybdate ABC transporter, permease protein IPR005950 Molybdate ABC transporter, substrate-binding protein IPR029062 Class I glutamine amidotransferase-like IPR017929 CobB/CobQ glutamine amidotransferase IPR033949 Cobyric acid synthase, glutamine amidotransferase type 1 IPR004459 Cobyric acid synthase CobQ IPR011698 CobB/CobQ-like glutamine amidotransferase IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR036700 Bacterial OB-fold superfamily IPR005220 Bacterial OB-fold IPR016052 Bacteriophage 933W, L0136 IPR004839 Aminotransferase, class I/classII IPR000796 Aspartate/other aminotransferase IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR029062 Class I glutamine amidotransferase-like IPR009057 Homeobox-like domain superfamily IPR018060 DNA binding HTH domain, AraC-type IPR018062 HTH domain AraC-type, conserved site IPR020449 Transcription regulator HTH, AraC- type IPR002528 Multi antimicrobial extrusion protein IPR013785 Aldolase-type TIM barrel IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic IPR034457 Organic radical-activating enzymes IPR001989 Radical-activating enzyme, conserved site IPR007197 Radical SAM IPR005144 ATP-cone domain IPR019777 Formate C-acetyltransferase glycine radical, conserved site IPR001150 Glycine radical domain IPR012833 Ribonucleoside-triphosphate reductase, anaerobic IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain IPR006143 RND efflux pump, membrane fusion protein IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains IPR001036 Acriflavin resistance protein IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 IPR007272 Sulphur transport domain IPR017758 Coenzyme A disulphide reductase IPR023536 Coenzyme A disulphide reductase, staphyolococci IPR036188 FAD/NAD(P)-binding domain superfamily IPR023753 FAD/NAD(P)-binding domain IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel IPR006664 Outer membrane protein, bacterial IPR002368 Outer membrane protein, OmpA IPR006665 OmpA-like domain IPR006690 Outer membrane protein, OmpA-like, conserved site IPR036737 OmpA-like domain superfamily IPR000498 Outer membrane protein OmpA-like, transmembrane domain IPR001763 Rhodanese-like domain IPR036873 Rhodanese-like domain superfamily IPR009010 Aspartate decarboxylase-like domain superfamily IPR037951 YdeP-like, MopB domain IPR006656 Molybdopterin oxidoreductase IPR010046 Oxidoreductase alpha (molybdopterin) subunit IPR041953 YdeP, molybdopterin-binding oxidoreductase-like domain IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR016193 Cytidine deaminase-like IPR003786 Sulfur carrier protein FdhD IPR011701 Major facilitator superfamily IPR020846 Major facilitator superfamily domain IPR036259 MFS transporter superfamily IPR021159 Glycerate/sugar phosphate transporter, conserved site IPR000849 Sugar phosphate transporter IPR011006 CheY-like superfamily IPR016032 Signal transduction response regulator, C-terminal effector IPR001789 Signal transduction response regulator, receiver domain IPR000792 Transcription regulator LuxR, C-terminal IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR007895 MASE1 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain IPR011701 Major facilitator superfamily IPR020846 Major facilitator superfamily domain IPR036259 MFS transporter superfamily IPR021159 Glycerate/sugar phosphate transporter, conserved site IPR000849 Sugar phosphate transporter IPR001250 Mannose-6-phosphate isomerase, type I IPR016305 Mannose-6-phosphate isomerase IPR018050 Phosphomannose isomerase, type I, conserved site IPR014710 RmlC-like jelly roll fold IPR011051 RmlC-like cupin domain superfamily IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 IPR016039 Thiolase-like IPR005746 Thioredoxin IPR036249 Thioredoxin-like superfamily IPR017937 Thioredoxin, conserved site IPR013766 Thioredoxin domain IPR011701 Major facilitator superfamily IPR020846 Major facilitator superfamily domain IPR036259 MFS transporter superfamily IPR023745 MSF-type transporter, YcaD IPR011006 CheY-like superfamily IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR009057 Homeobox-like domain superfamily IPR018060 DNA binding HTH domain, AraC-type IPR018062 HTH domain AraC-type, conserved site IPR013783 Immunoglobulin-like fold IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily IPR011110 Two component regulator propeller IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR001789 Signal transduction response regulator, receiver domain IPR015943 WD40/YVTN repeat-like-containing domain superfamily IPR011123 Two component regulator three Y IPR002528 Multi antimicrobial extrusion protein IPR020483 Uncharacterised protein family YgbA IPR039426 Vitamin B12 transporter BtuB-like IPR012910 TonB-dependent receptor, plug domain IPR037066 TonB-dependent receptor, plug domain superfamily IPR000531 TonB-dependent receptor-like, beta-barrel IPR010916 TonB box, conserved site IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily IPR010917 TonB-dependent receptor, conserved site IPR010105 TonB-dependent siderophore receptor IPR004668 Anaerobic c4-dicarboxylate membrane transporter IPR000878 Tetrapyrrole methylase IPR035996 Tetrapyrrole methylase superfamily IPR014777 Tetrapyrrole methylase, subdomain 1 IPR014776 Tetrapyrrole methylase, subdomain 2 IPR006366 Uroporphyrin-III C-methyltransferase IPR036291 NAD(P)-binding domain superfamily IPR037115 Sirohaem synthase, dimerisation domain superfamily IPR012409 Sirohaem synthase IPR028281 Siroheme synthase, central domain IPR019478 Sirohaem synthase, dimerisation domain IPR006367 Sirohaem synthase, N-terminal IPR003043 Uroporphiryn-III C-methyltransferase, conserved site IPR017881 Nitrite reductase (NADH) small subunit IPR012748 Rieske-like [2Fe-2S] domain, NirD-type IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily IPR007419 BFD-like [2Fe-2S]-binding domain IPR041854 BFD-like [2Fe-2S]-binding domain superfamily IPR036188 FAD/NAD(P)-binding domain superfamily IPR023753 FAD/NAD(P)-binding domain IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB IPR017121 Nitrite reductase [NAD(P)H], large subunit IPR006067 Nitrite/sulphite reductase 4Fe-4S domain IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site IPR041575 NADH-rubredoxin oxidoreductase, C-terminal IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily IPR028625 Regulator of nucleoside diphosphate kinase IPR029462 Regulator of nucleoside diphosphate kinase, N-terminal domain IPR001437 Transcription elongation factor, GreA/GreB, C-terminal IPR023459 Transcription elongation factor GreA/GreB family IPR023171 Na/H antiporter domain superfamily IPR004670 Na+/H+ antiporter NhaA IPR012336 Thioredoxin-like fold IPR036249 Thioredoxin-like superfamily IPR013766 Thioredoxin domain IPR013776 Alpha-amylase, thermostable IPR015237 Alpha-amylase C-terminal, prokaryotic IPR006047 Glycosyl hydrolase, family 13, catalytic domain IPR013780 Glycosyl hydrolase, all-beta IPR017853 Glycoside hydrolase superfamily IPR000821 Alanine racemase IPR009006 Alanine racemase/group IV decarboxylase, C-terminal IPR011079 Alanine racemase, C-terminal IPR001608 Alanine racemase, N-terminal IPR020622 Alanine racemase, pyridoxal-phosphate attachment site IPR029066 PLP-binding barrel IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 IPR016173 D-lactate dehydrogenase, C-terminal subdomain 2 IPR012256 D-lactate dehydrogenase IPR016166 FAD-binding domain, PCMH-type IPR036318 FAD-binding, type PCMH-like superfamily IPR016167 FAD-binding, type PCMH, subdomain 1 IPR016169 FAD-binding, type PCMH, subdomain 2 IPR016164 FAD-linked oxidase-like, C-terminal IPR015409 D-lactate dehydrogenase, membrane binding, C-terminal IPR006094 FAD linked oxidase, N-terminal IPR008912 Uncharacterised protein family CoxE-like IPR023481 Uncharacterised protein family ViaA IPR002035 von Willebrand factor, type A IPR036465 von Willebrand factor A-like domain superfamily IPR003593 AAA+ ATPase domain IPR011704 ATPase, dynein-related, AAA domain IPR023671 ATPase RavA IPR022547 ATPase, RavA, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR041538 ATPase RavA-like, AAA lid domain IPR009056 Cytochrome c-like domain IPR036909 Cytochrome c-like domain superfamily IPR024167 Cytochrome c4-like IPR018385 C4-dicarboxylate anaerobic carrier-like IPR004812 Drug resistance transporter Bcr/CmlA subfamily IPR011701 Major facilitator superfamily IPR020846 Major facilitator superfamily domain IPR036259 MFS transporter superfamily IPR005829 Sugar transporter, conserved site IPR012674 Calycin IPR022271 Lipocalin, ApoD type IPR002446 Lipocalin, bacterial IPR022272 Lipocalin family conserved site IPR000566 Lipocalin/cytosolic fatty-acid binding domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR038729 Rad50/SbcC-type AAA domain IPR004843 Calcineurin-like phosphoesterase domain, ApaH type IPR029052 Metallo-dependent phosphatase-like IPR041796 Mre11 nuclease, N-terminal metallophosphatase domain IPR004593 Nuclease SbcCD subunit D IPR026843 Nuclease SbcCD subunit D, C-terminal domain IPR006531 Gp5 N-terminal IPR010609 Gp5, C-terminal IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset IPR006533 Type VI secretion system, RhsGE-associated Vgr protein IPR037026 Vgr protein, OB-fold domain superfamily IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 IPR015655 Protein phosphatase 2C family IPR036457 PPM-type phosphatase domain superfamily IPR001932 PPM-type phosphatase domain IPR009612 IcmF-related IPR025743 IcmF-related, N-terminal domain IPR010623 Type VI secretion system IcmF, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR017731 Type VI secretion system, IcmF IPR025713 Motility protein B, N-terminal domain IPR006665 OmpA-like domain IPR036737 OmpA-like domain superfamily IPR011009 Protein kinase-like domain superfamily IPR005543 PASTA domain IPR000719 Protein kinase domain IPR017441 Protein kinase, ATP binding site IPR008271 Serine/threonine-protein kinase, active site IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase IPR011006 CheY-like superfamily IPR029787 Nucleotide cyclase IPR001789 Signal transduction response regulator, receiver domain IPR023772 DNA-binding HTH domain, TetR-type, conserved site IPR009057 Homeobox-like domain superfamily IPR001647 DNA-binding HTH domain, TetR-type IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily IPR013572 Transcription regulator MAATS, C-terminal IPR007419 BFD-like [2Fe-2S]-binding domain IPR041854 BFD-like [2Fe-2S]-binding domain superfamily IPR036188 FAD/NAD(P)-binding domain superfamily IPR023753 FAD/NAD(P)-binding domain IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB IPR006067 Nitrite/sulphite reductase 4Fe-4S domain IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site IPR012748 Rieske-like [2Fe-2S] domain, NirD-type IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily IPR041575 NADH-rubredoxin oxidoreductase, C-terminal IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR005890 Nitrate transport ATP-binding subunit C/D IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR005889 Nitrate transport permease IPR029070 Chitinase insertion domain superfamily IPR006311 Twin-arginine translocation pathway, signal sequence IPR005561 ANTAR domain IPR011006 CheY-like superfamily IPR013587 Nitrate/nitrite sensing protein IPR010910 Nitrate/nitrite sensing protein, bacterial IPR036388 Winged helix-like DNA-binding domain superfamily IPR029058 Alpha/Beta hydrolase fold IPR002925 Dienelactone hydrolase IPR005940 Anthranilate phosphoribosyl transferase IPR000312 Glycosyl transferase, family 3 IPR017459 Glycosyl transferase family 3, N-terminal domain IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily IPR000878 Tetrapyrrole methylase IPR035996 Tetrapyrrole methylase superfamily IPR014777 Tetrapyrrole methylase, subdomain 1 IPR014776 Tetrapyrrole methylase, subdomain 2 IPR006366 Uroporphyrin-III C-methyltransferase IPR036291 NAD(P)-binding domain superfamily IPR037115 Sirohaem synthase, dimerisation domain superfamily IPR012409 Sirohaem synthase IPR028281 Siroheme synthase, central domain IPR019478 Sirohaem synthase, dimerisation domain IPR006367 Sirohaem synthase, N-terminal IPR003043 Uroporphiryn-III C-methyltransferase, conserved site IPR009010 Aspartate decarboxylase-like domain superfamily IPR006657 Molybdopterin dinucleotide-binding domain IPR006656 Molybdopterin oxidoreductase IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site IPR008979 Galactose-binding-like domain superfamily IPR002884 P domain IPR000209 Peptidase S8/S53 domain IPR036852 Peptidase S8/S53 domain superfamily IPR023827 Peptidase S8, subtilisin, Asp-active site IPR023828 Peptidase S8, subtilisin, Ser-active site IPR015500 Peptidase S8, subtilisin-related IPR011006 CheY-like superfamily IPR001867 OmpR/PhoB-type DNA-binding domain IPR001789 Signal transduction response regulator, receiver domain IPR039420 Transcriptional regulatory protein WalR-like IPR036388 Winged helix-like DNA-binding domain superfamily IPR018016 Nucleoside phosphorylase, conserved site IPR000845 Nucleoside phosphorylase domain IPR035994 Nucleoside phosphorylase superfamily IPR010058 Uridine phosphorylase IPR006419 Nicotinamide mononucleotide transporter PnuC IPR000843 LacI-type HTH domain IPR010982 Lambda repressor-like, DNA-binding domain superfamily IPR028082 Periplasmic binding protein-like I IPR002173 Carbohydrate/puine kinase, PfkB, conserved site IPR011877 Ribokinase IPR011611 Carbohydrate kinase PfkB IPR002139 Ribokinase/fructokinase IPR029056 Ribokinase-like IPR028082 Periplasmic binding protein-like I IPR025997 Periplasmic binding protein IPR001851 ABC transporter, permease IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR015861 ABC transporter, ribose import, RbsA IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR023064 D-ribose pyranase IPR023750 RbsD-like superfamily IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU IPR010049 MTA/SAH nucleosidase IPR000845 Nucleoside phosphorylase domain IPR035994 Nucleoside phosphorylase superfamily IPR006694 Fatty acid hydroxylase IPR009056 Cytochrome c-like domain IPR036909 Cytochrome c-like domain superfamily IPR004852 Di-haem cytochrome c peroxidase IPR026259 Di-c-type haem protein, MauG/cytochrome c peroxidase IPR033878 Nitroreductase NfsB-like IPR029479 Nitroreductase IPR000415 Nitroreductase-like IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR000644 CBS domain IPR005892 Glycine betaine transport ATP-binding subunit IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR007210 ABC-type glycine betaine transport system, substrate-binding domain IPR011533 Oxygen-dependent choline dehydrogenase IPR036188 FAD/NAD(P)-binding domain superfamily IPR027424 Glucose Oxidase, domain 2 IPR012132 Glucose-methanol-choline oxidoreductase IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal IPR016161 Aldehyde/histidinol dehydrogenase IPR016163 Aldehyde dehydrogenase, C-terminal IPR016160 Aldehyde dehydrogenase, cysteine active site IPR029510 Aldehyde dehydrogenase, glutamic acid active site IPR016162 Aldehyde dehydrogenase, N-terminal IPR015590 Aldehyde dehydrogenase domain IPR011264 Betaine aldehyde dehydrogenase IPR039538 BetI-type transcriptional repressor, C-terminal IPR023772 DNA-binding HTH domain, TetR-type, conserved site IPR009057 Homeobox-like domain superfamily IPR001647 DNA-binding HTH domain, TetR-type IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily IPR017757 Transcriptional repressor BetI IPR033416 Periplasmic sensor domain CHASE7 IPR000160 GGDEF domain IPR029787 Nucleotide cyclase IPR006089 Acyl-CoA dehydrogenase, conserved site IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain IPR036250 Acyl-CoA dehydrogenase-like, C-terminal IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily IPR029045 ClpP/crotonase-like domain superfamily IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB IPR018376 Enoyl-CoA hydratase/isomerase, conserved site IPR001753 Enoyl-CoA hydratase/isomerase IPR014748 Enoyl-CoA hydratase, C-terminal IPR011761 ATP-grasp fold IPR005481 Biotin carboxylase-like, N-terminal domain IPR001882 Biotin-binding site IPR011764 Biotin carboxylation domain IPR005482 Biotin carboxylase, C-terminal IPR000089 Biotin/lipoyl attachment IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain IPR016185 Pre-ATP-grasp domain superfamily IPR011054 Rudiment single hybrid motif IPR011053 Single hybrid motif IPR011006 CheY-like superfamily IPR003660 HAMP domain IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR019247 Histidine kinase BarA, N-terminal IPR036641 HPT domain superfamily IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain IPR001789 Signal transduction response regulator, receiver domain IPR010920 LSM domain superfamily IPR006685 Mechanosensitive ion channel MscS IPR011066 Mechanosensitive ion channel MscS, C-terminal IPR006686 Mechanosensitive ion channel MscS, conserved site IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 IPR023408 Mechanosensitive ion channel MscS domain superfamily IPR025692 Mechanosensitive ion channel inner membrane domain 1 IPR024393 Mechanosensitive ion channel MscS, porin domain IPR002585 Cytochrome ubiquinol oxidase subunit 1 IPR003719 Phenazine biosynthesis PhzF protein IPR029032 AhpD-like IPR003779 Carboxymuconolactone decarboxylase-like IPR012788 4-carboxymuconolactone decarboxylase IPR009061 Putative DNA-binding domain superfamily IPR000551 MerR-type HTH domain IPR009056 Cytochrome c-like domain IPR036909 Cytochrome c-like domain superfamily IPR002327 Cytochrome c, class IA/ IB IPR029063 S-adenosyl-L-methionine-dependent methyltransferase IPR022474 Thiopurine S-methyltransferase, Se/Te detoxification IPR025835 Thiopurine S-methyltransferase IPR008854 TPMT family IPR028154 AMP-dependent ligase, C-terminal IPR000873 AMP-dependent synthetase/ligase IPR042099 AMP-dependent synthetase-like superfamily IPR011880 Phenylacetate-CoA ligase IPR003593 AAA+ ATPase domain IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal IPR012255 Electron transfer flavoprotein, beta subunit IPR033948 Electron transfer flavoprotein, beta subunit, N-terminal IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR029035 DHS-like NAD/FAD-binding domain superfamily IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal IPR001308 Electron transfer flavoprotein alpha subunit/FixB IPR033947 Electron transfer flavoprotein, alpha subunit, N-terminal IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal IPR018206 Electron transfer flavoprotein subunit alpha, conserved site IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR013785 Aldolase-type TIM barrel IPR005993 GMP reductase IPR015875 IMP dehydrogenase / GMP reductase, conserved site IPR001093 IMP dehydrogenase/GMP reductase IPR017953 Carbohydrate kinase, predicted, conserved site IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr IPR029056 Ribokinase-like IPR004443 YjeF N-terminal domain IPR036652 YjeF N-terminal domain superfamily IPR011006 CheY-like superfamily IPR001789 Signal transduction response regulator, receiver domain IPR020471 Aldo/keto reductase IPR023210 NADP-dependent oxidoreductase domain IPR036812 NADP-dependent oxidoreductase domain superfamily IPR023861 Chloride channel, ClcA IPR014743 Chloride channel, core IPR001807 Chloride channel, voltage gated IPR001046 NRAMP family IPR001474 GTP cyclohydrolase I IPR018234 GTP cyclohydrolase I, conserved site IPR020602 GTP cyclohydrolase I domain IPR036425 MoaB/Mog-like domain superfamily IPR001453 MoaB/Mog domain IPR008284 Molybdenum cofactor biosynthesis, conserved site IPR038987 Molybdopterin biosynthesis protein MoeA-like IPR005111 MoeA, C-terminal, domain IV IPR036688 MoeA, C-terminal, domain IV superfamily IPR005110 MoeA, N-terminal and linker domain IPR036135 MoeA, N-terminal and linker domain superfamily IPR012730 Molybdopterin synthase sulfurylase MoeB IPR000594 THIF-type NAD/FAD binding fold IPR035985 Ubiquitin-activating enzyme IPR001763 Rhodanese-like domain IPR036873 Rhodanese-like domain superfamily IPR001307 Thiosulphate sulfurtransferase, conserved site IPR013785 Aldolase-type TIM barrel IPR001585 Transaldolase/Fructose-6-phosphate aldolase IPR004730 Transaldolase type 1 IPR018225 Transaldolase, active site IPR029061 Thiamin diphosphate-binding fold IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II IPR005475 Transketolase-like, pyrimidine-binding domain IPR005478 Transketolase, bacterial-like IPR020826 Transketolase binding site IPR033248 Transketolase, C-terminal domain IPR033247 Transketolase family IPR005474 Transketolase, N-terminal IPR004090 Chemotaxis methyl-accepting receptor IPR003660 HAMP domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR001610 PAC motif IPR000014 PAS domain IPR035965 PAS domain superfamily IPR013655 PAS fold-3 IPR011701 Major facilitator superfamily IPR020846 Major facilitator superfamily domain IPR036259 MFS transporter superfamily IPR013785 Aldolase-type TIM barrel IPR006218 DAHP synthetase I/KDSA IPR006219 DHAP synthase, class 1 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel IPR006664 Outer membrane protein, bacterial IPR002368 Outer membrane protein, OmpA IPR006665 OmpA-like domain IPR006690 Outer membrane protein, OmpA-like, conserved site IPR036737 OmpA-like domain superfamily IPR000498 Outer membrane protein OmpA-like, transmembrane domain IPR010976 Beta-phosphoglucomutase hydrolase IPR036412 HAD-like superfamily IPR006439 HAD hydrolase, subfamily IA IPR041492 Haloacid dehalogenase-like hydrolase IPR023214 HAD superfamily IPR023198 Phosphoglycolate phosphatase-like, domain 2 IPR000352 Peptide chain release factor class I IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains IPR001036 Acriflavin resistance protein IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain IPR006143 RND efflux pump, membrane fusion protein IPR016192 APOBEC/CMP deaminase, zinc-binding IPR002125 Cytidine and deoxycytidylate deaminase domain IPR016193 Cytidine deaminase-like IPR016473 Deoxycytidylate deaminase IPR015517 Deoxycytidylate deaminase-related IPR035105 Deoxycytidylate deaminase domain IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site IPR036264 Bacterial exopeptidase dimerisation domain IPR002933 Peptidase M20 IPR011650 Peptidase M20, dimerisation domain IPR010161 Peptidase M20B, tripeptide aminopeptidase IPR011006 CheY-like superfamily IPR016032 Signal transduction response regulator, C-terminal effector IPR001789 Signal transduction response regulator, receiver domain IPR000792 Transcription regulator LuxR, C-terminal IPR003660 HAMP domain IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR029095 NarX-like, N-terminal IPR042295 NarX-like, N-terminal domain superfamily IPR016380 Signal transduction histidine kinase, nitrate/nitrite-sensing IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site IPR004496 Ferredoxin-type protein NapF IPR009010 Aspartate decarboxylase-like domain superfamily IPR041957 Nitrate reductase NapA-like, molybdopterin-binding domain IPR006657 Molybdopterin dinucleotide-binding domain IPR006656 Molybdopterin oxidoreductase IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site IPR010051 Periplasmic nitrate reductase, large subunit IPR006311 Twin-arginine translocation pathway, signal sequence IPR011031 Multihaem cytochrome IPR036280 Multiheme cytochrome superfamily IPR005591 Nitrate reductase cytochrome c-type subunit NapB IPR011031 Multihaem cytochrome IPR036280 Multiheme cytochrome superfamily IPR024717 Denitrification system component NapC/NirT/NrfH IPR005126 NapC/NirT cytochrome c, N-terminal IPR038266 NapC/NirT cytochrome c superfamily IPR011885 Periplasmic nitrate reductase c-type cytochrome, NapC/NirT IPR029058 Alpha/Beta hydrolase fold IPR000073 Alpha/beta hydrolase fold-1 IPR010963 Poly(R)-hydroxyalkanoic acid synthase, class I IPR010941 Poly-beta-hydroxybutyrate polymerase, N-terminal domain IPR002155 Thiolase IPR016039 Thiolase-like IPR020615 Thiolase, acyl-enzyme intermediate active site IPR020610 Thiolase, active site IPR020617 Thiolase, C-terminal IPR020613 Thiolase, conserved site IPR020616 Thiolase, N-terminal IPR011283 Acetoacetyl-CoA reductase IPR036291 NAD(P)-binding domain superfamily IPR020904 Short-chain dehydrogenase/reductase, conserved site IPR002347 Short-chain dehydrogenase/reductase SDR IPR011991 ArsR-like helix-turn-helix domain IPR000485 AsnC-type HTH domain IPR011008 Dimeric alpha-beta barrel IPR019888 Transcription regulator AsnC-type IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain IPR019885 Transcription regulator HTH, AsnC-type, conserved site IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain IPR028082 Periplasmic binding protein-like I IPR025997 Periplasmic binding protein IPR000305 GIY-YIG endonuclease IPR035901 GIY-YIG endonuclease superfamily IPR007432 Protein of unknown function DUF480 IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR007458 Protein of unknown function DUF496 IPR002528 Multi antimicrobial extrusion protein IPR036291 NAD(P)-binding domain superfamily IPR000683 Oxidoreductase, N-terminal IPR011006 CheY-like superfamily IPR003660 HAMP domain IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR019247 Histidine kinase BarA, N-terminal IPR036641 HPT domain superfamily IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain IPR001789 Signal transduction response regulator, receiver domain IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I IPR036291 NAD(P)-binding domain superfamily IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR002293 Amino acid/polyamine transporter I IPR004839 Aminotransferase, class I/classII IPR015424 Pyridoxal phosphate-dependent transferase IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR000524 Transcription regulator HTH, GntR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR011009 Protein kinase-like domain superfamily IPR000719 Protein kinase domain IPR010232 Probable protein kinase UbiB IPR004147 UbiB domain IPR030191 Cytosine permease IPR001248 Purine-cytosine permease IPR038271 Purine-cytosine permease superfamily IPR013108 Amidohydrolase 3 IPR011059 Metal-dependent hydrolase, composite domain superfamily IPR032466 Metal-dependent hydrolase IPR003607 HD/PDEase domain IPR006674 HD domain IPR023727 Lysophospholipid transporter LplT IPR011701 Major facilitator superfamily IPR036259 MFS transporter superfamily IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB IPR000889 Glutathione peroxidase IPR029759 Glutathione peroxidase active site IPR036249 Thioredoxin-like superfamily IPR003346 Transposase, IS116/IS110/IS902 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal IPR037146 Colicin/pyocin, DNase domain superfamily IPR003615 HNH nuclease IPR003060 Pyocin S killer protein IPR016128 Pyosin/cloacin translocation domain IPR036302 Pyosin/cloacin translocation domain superfamily IPR037146 Colicin/pyocin, DNase domain superfamily IPR003615 HNH nuclease IPR003593 AAA+ ATPase domain IPR006345 RecD-like DNA helicase IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR029493 RecD helicase-like helix-hairpin-helix domain IPR041451 RecD-like DNA helicase, SH3 domain IPR027785 UvrD-like helicase C-terminal domain IPR036291 NAD(P)-binding domain superfamily IPR020904 Short-chain dehydrogenase/reductase, conserved site IPR002347 Short-chain dehydrogenase/reductase SDR IPR011006 CheY-like superfamily IPR001867 OmpR/PhoB-type DNA-binding domain IPR016032 Signal transduction response regulator, C-terminal effector IPR001789 Signal transduction response regulator, receiver domain IPR039420 Transcriptional regulatory protein WalR-like IPR036388 Winged helix-like DNA-binding domain superfamily IPR003660 HAMP domain IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR017850 Alkaline-phosphatase-like, core domain superfamily IPR012549 Phosphoethanolamine transferase, N-terminal IPR040423 Phosphoethanolamine transferase IPR000917 Sulfatase, N-terminal IPR036291 NAD(P)-binding domain superfamily IPR000683 Oxidoreductase, N-terminal IPR011701 Major facilitator superfamily IPR020846 Major facilitator superfamily domain IPR036259 MFS transporter superfamily IPR004734 Multidrug resistance protein IPR005829 Sugar transporter, conserved site IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG IPR000835 MarR-type HTH domain IPR023187 Transcriptional regulator MarR-type, conserved site IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR001365 Adenosine/AMP deaminase domain IPR028892 Adenine deaminase type 2 IPR006330 Adenosine/adenine deaminase IPR032466 Metal-dependent hydrolase IPR011767 Glutaredoxin active site IPR002109 Glutaredoxin IPR037944 Peroxiredoxin-5-like IPR013740 Redoxin IPR036249 Thioredoxin-like superfamily IPR013766 Thioredoxin domain IPR010987 Glutathione S-transferase, C-terminal-like IPR036282 Glutathione S-transferase, C-terminal domain superfamily IPR040079 Glutathione Transferase family IPR004045 Glutathione S-transferase, N-terminal IPR036249 Thioredoxin-like superfamily IPR023772 DNA-binding HTH domain, TetR-type, conserved site IPR009057 Homeobox-like domain superfamily IPR001647 DNA-binding HTH domain, TetR-type IPR004111 Tetracycline repressor TetR, C-terminal IPR003012 Tetracycline transcriptional regulator, TetR IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily IPR024072 Dihydrofolate reductase-like domain superfamily IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal IPR038689 Thermostable direct haemolysin superfamily IPR005015 Thermostable direct haemolysin, vibrio IPR025668 Transposase DDE domain IPR009057 Homeobox-like domain superfamily IPR001584 Integrase, catalytic core IPR012337 Ribonuclease H-like superfamily IPR036397 Ribonuclease H superfamily IPR001598 Transposase, IS30, conserved site IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain IPR001633 EAL domain IPR035919 EAL domain superfamily IPR003593 AAA+ ATPase domain IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain IPR032463 ATPase, type III secretion system, FliI IPR005714 ATPase, type III secretion system, FliI/YscN IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR040627 T3SS EscN ATPase, C-terminal IPR005644 NolW-like IPR038591 NolW-like superfamily IPR004846 Type II/III secretion system IPR004845 Type II secretion system GspD, conserved site IPR003522 Type III secretion system outer membrane pore YscC/HrcC IPR005838 Type III secretion system inner membrane P protein IPR005773 Yop virulence translocation protein R IPR005083 Serine/Threonine acetyltransferase, YopJ IPR001867 OmpR/PhoB-type DNA-binding domain IPR016032 Signal transduction response regulator, C-terminal effector IPR039420 Transcriptional regulatory protein WalR-like IPR036388 Winged helix-like DNA-binding domain superfamily IPR006664 Outer membrane protein, bacterial IPR006665 OmpA-like domain IPR006690 Outer membrane protein, OmpA-like, conserved site IPR036737 OmpA-like domain superfamily IPR042194 FHIPEP, domain 1 IPR042193 FHIPEP, domain 3 IPR042196 FHIPEP, domain 4 IPR025505 FHIPEP conserved site IPR001712 Type III secretion system FHIPEP IPR006302 Type III secretion protein HrcV IPR009057 Homeobox-like domain superfamily IPR038965 Transposase InsF-like IPR025385 Domain of unknown function DUF4092 IPR035423 M60-like domain, N-terminal IPR042279 Peptidase M60, enhancin-like domain 3 IPR031161 Peptidase family M60 domain IPR038689 Thermostable direct haemolysin superfamily IPR005015 Thermostable direct haemolysin, vibrio IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR030156 Maltose/maltodextrin transport system permease protein MalF-like IPR035277 MalF, N-terminal IPR029345 Maltose transport system permease protein MalF, P2 domain IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein IPR006059 Bacterial extracellular solute-binding protein IPR006061 Solute-binding family 1, conserved site IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR015855 ABC transporter, maltose/maltodextrin import, MalK IPR008995 Molybdate/tungstate binding, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR013611 Transport-associated OB, type 2 IPR003362 Bacterial sugar transferase IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase IPR017473 Undecaprenyl-phosphate glucose phosphotransferase, WcaJ IPR001296 Glycosyl transferase, family 1 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain IPR008314 Uncharacterised conserved protein UCP029143 IPR007374 ASCH domain IPR015947 PUA-like superfamily IPR009057 Homeobox-like domain superfamily IPR001647 DNA-binding HTH domain, TetR-type IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily IPR011075 Tetracyclin repressor-like, C-terminal domain IPR013149 Alcohol dehydrogenase, C-terminal IPR041694 Oxidoreductase, N-terminal domain IPR011032 GroES-like superfamily IPR036291 NAD(P)-binding domain superfamily IPR020843 Polyketide synthase, enoylreductase domain IPR010987 Glutathione S-transferase, C-terminal-like IPR036282 Glutathione S-transferase, C-terminal domain superfamily IPR040079 Glutathione Transferase family IPR004045 Glutathione S-transferase, N-terminal IPR005955 Glutathione S-transferases, class Zeta IPR034330 Glutathione S-transferases, class Zeta , C-terminal IPR034333 Glutathione S-transferases, class Zeta , N-terminal IPR036249 Thioredoxin-like superfamily IPR018028 Catalase, mono-functional, haem-containing IPR040333 Catalase, clade 3 IPR024708 Catalase active site IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 IPR011614 Catalase core domain IPR037060 Catalase core domain superfamily IPR002226 Catalase haem-binding site IPR010582 Catalase immune-responsive domain IPR020835 Catalase superfamily IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily IPR013328 6-phosphogluconate dehydrogenase, domain 2 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding IPR015815 3-hydroxyisobutyrate dehydrogenase-related IPR036291 NAD(P)-binding domain superfamily IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain IPR036095 PTS system IIB component-like superfamily IPR013011 Phosphotransferase system, EIIB component, type 2 IPR003501 Phosphotransferase system, EIIB component, type 2/3 IPR003353 Phosphotransferase system, fructose-specific IIB subunit IPR016152 Phosphotransferase/anion transporter IPR002178 PTS EIIA type-2 domain IPR036095 PTS system IIB component-like superfamily IPR013011 Phosphotransferase system, EIIB component, type 2 IPR003501 Phosphotransferase system, EIIB component, type 2/3 IPR013014 Phosphotransferase system, EIIC component, type 2 IPR004715 Phosphotransferase system, IIA component fructose subfamily IPR003353 Phosphotransferase system, fructose-specific IIB subunit IPR006327 Phosphotransferase system, fructose IIC component IPR001250 Mannose-6-phosphate isomerase, type I IPR016305 Mannose-6-phosphate isomerase IPR018050 Phosphomannose isomerase, type I, conserved site IPR014710 RmlC-like jelly roll fold IPR011051 RmlC-like cupin domain superfamily IPR036412 HAD-like superfamily IPR006439 HAD hydrolase, subfamily IA IPR041492 Haloacid dehalogenase-like hydrolase IPR023214 HAD superfamily IPR023198 Phosphoglycolate phosphatase-like, domain 2 IPR014068 Azurin IPR000923 Blue (type 1) copper domain IPR028871 Blue (type 1) copper protein, binding site IPR008972 Cupredoxin IPR001633 EAL domain IPR035919 EAL domain superfamily IPR000160 GGDEF domain IPR005330 MHYT domain IPR029787 Nucleotide cyclase IPR001633 EAL domain IPR035919 EAL domain superfamily IPR000160 GGDEF domain IPR005330 MHYT domain IPR029787 Nucleotide cyclase IPR003445 Cation transporter IPR004772 TrkH potassium transport family IPR036291 NAD(P)-binding domain superfamily IPR006037 Regulator of K+ conductance, C-terminal IPR036721 Regulator of K+ conductance, C-terminal domain superfamily IPR003148 Regulator of K+ conductance, N-terminal IPR011006 CheY-like superfamily IPR001867 OmpR/PhoB-type DNA-binding domain IPR001789 Signal transduction response regulator, receiver domain IPR039420 Transcriptional regulatory protein WalR-like IPR036388 Winged helix-like DNA-binding domain superfamily IPR029016 GAF-like domain superfamily IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR038318 KdpD, transmembrane domain superfamily IPR025201 Sensor protein KdpD, transmembrane domain IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal IPR003593 AAA+ ATPase domain IPR011527 ABC transporter type 1, transmembrane domain IPR036640 ABC transporter type 1, transmembrane domain superfamily IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR039421 Type I protein exporter IPR003593 AAA+ ATPase domain IPR011527 ABC transporter type 1, transmembrane domain IPR036640 ABC transporter type 1, transmembrane domain superfamily IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR039421 Type I protein exporter IPR012910 TonB-dependent receptor, plug domain IPR037066 TonB-dependent receptor, plug domain superfamily IPR039423 TonB-dependent receptor-like IPR000531 TonB-dependent receptor-like, beta-barrel IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily IPR010917 TonB-dependent receptor, conserved site IPR010105 TonB-dependent siderophore receptor IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR002491 ABC transporter periplasmic binding domain IPR037294 ABC transporter, BtuC-like IPR000522 ABC transporter, permease protein, BtuC-like IPR006664 Outer membrane protein, bacterial IPR006665 OmpA-like domain IPR006690 Outer membrane protein, OmpA-like, conserved site IPR036737 OmpA-like domain superfamily IPR039001 Peptidoglycan-associated lipoprotein IPR014169 Peptidoglycan-associated lipoprotein, C-terminal IPR006144 Secretion protein HlyD, conserved site IPR010129 Type I secretion membrane fusion protein, HlyD family IPR003593 AAA+ ATPase domain IPR011527 ABC transporter type 1, transmembrane domain IPR036640 ABC transporter type 1, transmembrane domain superfamily IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR010128 ATPase, type I secretion system, PrtD IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR016032 Signal transduction response regulator, C-terminal effector IPR000792 Transcription regulator LuxR, C-terminal IPR036388 Winged helix-like DNA-binding domain superfamily IPR033479 Double Cache domain 1 IPR003660 HAMP domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR002881 Domain of unknown function DUF58 IPR036465 von Willebrand factor A-like domain superfamily IPR022933 Uncharacterised protein family UPF0353 IPR002035 von Willebrand factor, type A IPR036465 von Willebrand factor A-like domain superfamily IPR024163 Aerotolerance regulator, N-terminal IPR022933 Uncharacterised protein family UPF0353 IPR002035 von Willebrand factor, type A IPR036465 von Willebrand factor A-like domain superfamily IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR015850 ABC transporter, phosphate import, PstB IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR005670 Phosphate transport system permease protein 1 IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR005672 Phosphate transport system permease protein PstA IPR000515 ABC transporter type 1, transmembrane domain MetI-like IPR035906 MetI-like superfamily IPR011864 Phosphate ABC transporter, permease protein PstC IPR024370 PBP domain IPR039426 Vitamin B12 transporter BtuB-like IPR012910 TonB-dependent receptor, plug domain IPR037066 TonB-dependent receptor, plug domain superfamily IPR000531 TonB-dependent receptor-like, beta-barrel IPR010916 TonB box, conserved site IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily IPR010917 TonB-dependent receptor, conserved site IPR005490 L,D-transpeptidase catalytic domain IPR041597 L,D-transpeptidase C-terminal domain IPR018392 LysM domain IPR038063 L,D-transpeptidase catalytic domain-like IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain IPR002081 Cryptochrome/DNA photolyase class 1 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal IPR006050 DNA photolyase, N-terminal IPR014729 Rossmann-like alpha/beta/alpha sandwich fold IPR009061 Putative DNA-binding domain superfamily IPR000551 MerR-type HTH domain IPR013560 Domain of unknown function DUF1722 IPR004402 Purine nucleoside phosphorylase DeoD-type IPR000845 Nucleoside phosphorylase domain IPR035994 Nucleoside phosphorylase superfamily IPR011223 Uncharacterised conserved protein UCP028770 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain IPR009825 ECF transporter, substrate-specific component-like IPR022914 Protein of unknown function UPF0397 IPR003593 AAA+ ATPase domain IPR022216 Putative ABC cobalt transporter IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site IPR011886 Ferredoxin-type protein, NapH/MauN family IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site IPR004494 MauM/NapG ferredoxin-type protein IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal IPR016181 Acyl-CoA N-acyltransferase IPR000182 GNAT domain IPR009875 PilZ domain IPR012349 FMN-binding split barrel IPR009926 Type III secretion system flagellar brake protein YcgR, N-terminal IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR003804 L-lactate permease IPR013785 Aldolase-type TIM barrel IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent IPR000262 FMN-dependent dehydrogenase IPR037396 FMN hydroxy acid dehydrogenase domain IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site IPR020920 L-lactate dehydrogenase, bacterial IPR010920 LSM domain superfamily IPR006685 Mechanosensitive ion channel MscS IPR011066 Mechanosensitive ion channel MscS, C-terminal IPR006686 Mechanosensitive ion channel MscS, conserved site IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 IPR023408 Mechanosensitive ion channel MscS domain superfamily IPR041891 Carbonic anhydrase, prokaryotic-like IPR001148 Alpha carbonic anhydrase domain IPR036398 Alpha carbonic anhydrase domain superfamily IPR023561 Carbonic anhydrase, alpha-class IPR018338 Carbonic anhydrase, alpha-class, conserved site IPR013149 Alcohol dehydrogenase, C-terminal IPR013154 Alcohol dehydrogenase, N-terminal IPR002328 Alcohol dehydrogenase, zinc-type, conserved site IPR011032 GroES-like superfamily IPR004627 L-threonine 3-dehydrogenase IPR036291 NAD(P)-binding domain superfamily IPR020843 Polyketide synthase, enoylreductase domain IPR011282 2-amino-3-ketobutyrate coenzyme A ligase IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site IPR004839 Aminotransferase, class I/classII IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR001320 Ionotropic glutamate receptor IPR018313 Solute-binding protein family 3, conserved site IPR001638 Solute-binding protein family 3/N-terminal domain of MltF IPR000192 Aminotransferase class V domain IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily IPR024134 Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone IPR018152 Superoxide dismutase, copper/zinc, binding site IPR001424 Superoxide dismutase, copper/zinc binding domain IPR011006 CheY-like superfamily IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR001610 PAC motif IPR000014 PAS domain IPR000700 PAS-associated, C-terminal IPR035965 PAS domain superfamily IPR013656 PAS fold-4 IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR001789 Signal transduction response regulator, receiver domain IPR011006 CheY-like superfamily IPR001867 OmpR/PhoB-type DNA-binding domain IPR016032 Signal transduction response regulator, C-terminal effector IPR001789 Signal transduction response regulator, receiver domain IPR039420 Transcriptional regulatory protein WalR-like IPR036388 Winged helix-like DNA-binding domain superfamily IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain IPR037523 Vicinal oxygen chelate (VOC) domain IPR037478 YwkD-like domain IPR023710 Probable phosphatase YcdX IPR003141 Polymerase/histidinol phosphatase, N-terminal IPR016195 Polymerase/histidinol phosphatase-like IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR000090 Flagellar motor switch protein FliG IPR023087 Flagellar motor switch protein FliG, C-terminal IPR011002 Flagellar motor switch protein FliG, alpha-helical IPR032779 Flagellar motor switch protein FliG, middle domain IPR028263 Flagellar motor switch protein FliG, N-terminal domain IPR001624 Flagellar hook-basal body complex protein FliE IPR006303 Flagellar biosynthesis protein FliR IPR002010 Type III secretion system inner membrane R protein IPR006136 Flagellar biosynthetic protein FlhB IPR006135 Type III secretion system substrate exporter IPR029025 Type III secretion system substrate exporter, C-terminal IPR042194 FHIPEP, domain 1 IPR042193 FHIPEP, domain 3 IPR042196 FHIPEP, domain 4 IPR025505 FHIPEP conserved site IPR006301 Flagellar biosynthesis protein FlhA IPR001712 Type III secretion system FHIPEP IPR001492 Flagellin IPR042187 Flagellin, C-terminal domain, subdomain 2 IPR001029 Flagellin, D0/D1 domain IPR010810 Flagellin hook, IN motif IPR040026 Flagellar hook-associated protein 2 IPR010809 Flagellar hook-associated protein 2, C-terminal IPR003481 Flagellar hook-associated protein 2, N-terminal IPR005503 Flagellar basal body-associated protein FliL IPR014284 RNA polymerase sigma-70 like domain IPR000943 RNA polymerase sigma-70 IPR007627 RNA polymerase sigma-70 region 2 IPR007630 RNA polymerase sigma-70 region 4 IPR012845 RNA polymerase sigma factor, FliA/WhiG IPR013325 RNA polymerase sigma factor, region 2 IPR013324 RNA polymerase sigma factor, region 3/4-like IPR000540 Flagellar motor protein MotA, conserved site IPR022522 Flagellar motor stator, MotA IPR002898 MotA/TolQ/ExbB proton channel IPR025713 Motility protein B, N-terminal domain IPR006665 OmpA-like domain IPR036737 OmpA-like domain superfamily IPR012544 Bacterial Pleckstrin homology domain IPR037063 Bacterial Pleckstrin homology domain superfamily IPR019777 Formate C-acetyltransferase glycine radical, conserved site IPR001150 Glycine radical domain IPR010098 Glycyl radical enzyme, PFL2/glycerol dehydratase family IPR004184 Pyruvate formate lyase domain IPR013785 Aldolase-type TIM barrel IPR034457 Organic radical-activating enzymes IPR012839 Organic radical enzyme activase IPR034465 Pyruvate formate-lyase activase IPR001989 Radical-activating enzyme, conserved site IPR007197 Radical SAM IPR013785 Aldolase-type TIM barrel IPR023001 Fructose-6-phosphate aldolase IPR001585 Transaldolase/Fructose-6-phosphate aldolase IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase IPR018225 Transaldolase, active site IPR033919 Transaldolase/Fructose-6-phosphate aldolase, archaeal/bacterial IPR016181 Acyl-CoA N-acyltransferase IPR000182 GNAT domain IPR011701 Major facilitator superfamily IPR020846 Major facilitator superfamily domain IPR036259 MFS transporter superfamily IPR023697 Multidrug resistance protein MdtL IPR005829 Sugar transporter, conserved site IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR023746 Transcription regulator HTH, YidZ IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR037402 HTH-type transcriptional regulator YidZ, PBP2 domain IPR000620 EamA domain IPR018635 Uncharacterised protein family UPF0319 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain IPR017927 FAD-binding domain, ferredoxin reductase-type IPR033892 Ferredoxin--NADP reductase, bacteria IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain IPR001433 Oxidoreductase FAD/NAD(P)-binding IPR017938 Riboflavin synthase-like beta-barrel IPR033878 Nitroreductase NfsB-like IPR029479 Nitroreductase IPR000415 Nitroreductase-like IPR031319 Alpha-amylase, C-terminal domain IPR013784 Carbohydrate-binding-like fold IPR002044 Carbohydrate binding module family 20 IPR006047 Glycosyl hydrolase, family 13, catalytic domain IPR013780 Glycosyl hydrolase, all-beta IPR017853 Glycoside hydrolase superfamily IPR013783 Immunoglobulin-like fold IPR012338 Beta-lactamase/transpeptidase-like IPR015956 Penicillin-binding protein, C-terminal domain superfamily IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal IPR029058 Alpha/Beta hydrolase fold IPR000073 Alpha/beta hydrolase fold-1 IPR002410 Peptidase S33 IPR001763 Rhodanese-like domain IPR036873 Rhodanese-like domain superfamily IPR020936 Uncharacterised protein family UPF0176 IPR040503 UPF0176, acylphosphatase-like domain IPR004302 Cellulose/chitin-binding protein, N-terminal IPR041029 N-acetylglucosamine binding protein A domain 2 IPR020879 N-acetylglucosamine-binding protein A IPR014756 Immunoglobulin E-set IPR002771 Multiple antibiotic resistance (MarC)-related IPR016446 Flavin oxidoreductase Frp family IPR029479 Nitroreductase IPR000415 Nitroreductase-like IPR003715 Polysaccharide export protein IPR019554 Soluble ligand binding domain IPR040716 Outer-membrane lipoprotein Wza, C-terminal domain IPR023485 Phosphotyrosine protein phosphatase I IPR036196 Phosphotyrosine protein phosphatase I superfamily IPR017867 Protein-tyrosine phosphatase, low molecular weight IPR025669 AAA domain IPR005702 Exopolysaccharide synthesis protein IPR032807 Tyrosine kinase, G-rich domain IPR003856 Polysaccharide chain length determinant N-terminal domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR011008 Dimeric alpha-beta barrel IPR014910 Putative monooxygenase YdhR IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR034703 Proton/glutamate-aspartate symporter GltP IPR033380 Glutamate-aspartate symport protein GltP/GltT IPR001991 Sodium:dicarboxylate symporter IPR018107 Sodium:dicarboxylate symporter, conserved site IPR036458 Sodium:dicarboxylate symporter superfamily IPR010652 Domain of unknown function DUF1232 IPR036264 Bacterial exopeptidase dimerisation domain IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria IPR002933 Peptidase M20 IPR011650 Peptidase M20, dimerisation domain IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain IPR001264 Glycosyl transferase, family 51 IPR023346 Lysozyme-like domain superfamily IPR036950 Penicillin binding protein transglycosylase domain IPR011812 Biosynthetic peptidoglycan transglycosylase IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta IPR037439 1,4-alpha-glucan-branching enzyme IPR006407 1,4-alpha-glucan-branching enzyme, GlgB IPR006047 Glycosyl hydrolase, family 13, catalytic domain IPR004193 Glycoside hydrolase, family 13, N-terminal IPR013780 Glycosyl hydrolase, all-beta IPR017853 Glycoside hydrolase superfamily IPR013783 Immunoglobulin-like fold IPR014756 Immunoglobulin E-set IPR003385 Glycoside hydrolase, family 77 IPR017853 Glycoside hydrolase superfamily IPR011833 Glycogen/starch/alpha-glucan phosphorylase IPR000811 Glycosyl transferase, family 35 IPR035090 Phosphorylase pyridoxal-phosphate attachment site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR016032 Signal transduction response regulator, C-terminal effector IPR011990 Tetratricopeptide-like helical domain superfamily IPR041617 MalT-like TPR region IPR023768 Transcriptional regulator HTH-type, MalT IPR000792 Transcription regulator LuxR, C-terminal IPR036388 Winged helix-like DNA-binding domain superfamily IPR003782 Copper chaperone SCO1/SenC IPR036249 Thioredoxin-like superfamily IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR004881 Ribosome biogenesis GTPase RsgA IPR010914 RsgA GTPase domain IPR001991 Sodium:dicarboxylate symporter IPR036458 Sodium:dicarboxylate symporter superfamily IPR023025 Serine/threonine transporter SstT IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase IPR004625 Pyridoxine kinase IPR023685 Pyridoxal kinase PdxY IPR029056 Ribokinase-like IPR002293 Amino acid/polyamine transporter I IPR004754 Amino acid antiporter IPR027566 Putrescine transporter PotE IPR011006 CheY-like superfamily IPR027568 Ornithine decarboxylase SpeF IPR005308 Orn/Lys/Arg decarboxylase, N-terminal IPR011193 Ornithine/lysine/arginine decarboxylase IPR000310 Orn/Lys/Arg decarboxylase, major domain IPR027464 Ornithine decarboxylase, N-terminal IPR008286 Orn/Lys/Arg decarboxylase, C-terminal IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily IPR015424 Pyridoxal phosphate-dependent transferase IPR015422 Pyridoxal phosphate-dependent transferase domain 1 IPR015421 Pyridoxal phosphate-dependent transferase, major domain IPR013784 Carbohydrate-binding-like fold IPR005323 Pullulanase, carbohydrate-binding module 41 IPR006047 Glycosyl hydrolase, family 13, catalytic domain IPR004193 Glycoside hydrolase, family 13, N-terminal IPR013780 Glycosyl hydrolase, all-beta IPR017853 Glycoside hydrolase superfamily IPR013783 Immunoglobulin-like fold IPR014756 Immunoglobulin E-set IPR011839 Alpha-1,6-glucosidases, pullulanase-type IPR024561 Alpha-1,6-glucosidases, pullulanase-type, C-terminal IPR041111 Pullulanase, Ins domain IPR040671 Pullulanase, N2 domain IPR007346 Endonuclease I IPR006047 Glycosyl hydrolase, family 13, catalytic domain IPR004185 Glycoside hydrolase, family 13, N-terminal Ig-like domain IPR013780 Glycosyl hydrolase, all-beta IPR017853 Glycoside hydrolase superfamily IPR013783 Immunoglobulin-like fold IPR032091 Maltogenic Amylase, C-terminal IPR023738 Maltoporin IPR003192 Porin, LamB-type IPR036998 Porin, LamB-type superfamily IPR006047 Glycosyl hydrolase, family 13, catalytic domain IPR004193 Glycoside hydrolase, family 13, N-terminal IPR013780 Glycosyl hydrolase, all-beta IPR011837 Glycogen debranching enzyme, GlgX type IPR017853 Glycoside hydrolase superfamily IPR013783 Immunoglobulin-like fold IPR014756 Immunoglobulin E-set IPR011701 Major facilitator superfamily IPR020846 Major facilitator superfamily domain IPR036259 MFS transporter superfamily IPR023697 Multidrug resistance protein MdtL IPR011249 Metalloenzyme, LuxS/M16 peptidase-like IPR011765 Peptidase M16, N-terminal IPR001431 Peptidase M16, zinc-binding site IPR007863 Peptidase M16, C-terminal IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR037294 ABC transporter, BtuC-like IPR000522 ABC transporter, permease protein, BtuC-like IPR037294 ABC transporter, BtuC-like IPR000522 ABC transporter, permease protein, BtuC-like IPR002491 ABC transporter periplasmic binding domain IPR012910 TonB-dependent receptor, plug domain IPR037066 TonB-dependent receptor, plug domain superfamily IPR011662 Secretin/TonB, short N-terminal domain IPR000531 TonB-dependent receptor-like, beta-barrel IPR010916 TonB box, conserved site IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily IPR010917 TonB-dependent receptor, conserved site IPR010105 TonB-dependent siderophore receptor IPR012910 TonB-dependent receptor, plug domain IPR037066 TonB-dependent receptor, plug domain superfamily IPR039423 TonB-dependent receptor-like IPR000531 TonB-dependent receptor-like, beta-barrel IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily IPR010105 TonB-dependent siderophore receptor IPR009049 Argininosuccinate lyase IPR011761 ATP-grasp fold IPR003806 ATP-grasp fold, PylC-type IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain IPR024083 Fumarase/histidase, N-terminal IPR000362 Fumarate lyase family IPR022761 Fumarate lyase, N-terminal IPR008948 L-Aspartase-like IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal IPR022770 Ferric iron reductase FhuF domain IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal IPR022770 Ferric iron reductase FhuF domain IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like IPR009006 Alanine racemase/group IV decarboxylase, C-terminal IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal IPR022272 Lipocalin family conserved site IPR000183 Ornithine/DAP/Arg decarboxylase IPR002433 Ornithine decarboxylase IPR029066 PLP-binding barrel IPR006059 Bacterial extracellular solute-binding protein IPR013727 Two-component sensor kinase, N-terminal IPR003660 HAMP domain IPR003594 Histidine kinase/HSP90-like ATPase IPR036890 Histidine kinase/HSP90-like ATPase superfamily IPR005467 Histidine kinase domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily IPR004358 Signal transduction histidine kinase-related protein, C-terminal IPR036878 Glucose permease domain IIB IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site IPR003352 Phosphotransferase system, EIIC IPR013013 Phosphotransferase system, EIIC component, type 1 IPR001996 Phosphotransferase system, IIB component, type 1 IPR011299 PTS system glucose-specific IIBC component IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component IPR001539 Peptidase U32 IPR009000 Translation protein, beta-barrel domain superfamily IPR001851 ABC transporter, permease IPR003593 AAA+ ATPase domain IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR017917 ABC transporter, arabinose import, ATP-binding protein, AraG IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR026266 L-arabinose-binding periplasmic protein IPR001761 Periplasmic binding protein/LacI sugar binding domain IPR028082 Periplasmic binding protein-like I IPR000577 Carbohydrate kinase, FGGY IPR018485 Carbohydrate kinase, FGGY, C-terminal IPR018484 Carbohydrate kinase, FGGY, N-terminal IPR005929 Ribulokinase IPR001303 Class II aldolase/adducin N-terminal IPR036409 Class II aldolase/adducin N-terminal domain superfamily IPR023499 L-ribulose-5-phosphate 4-epimerase UlaF IPR024664 L-arabinose isomerase, C-terminal IPR038583 L-arabinose isomerase, N-terminal domain superfamily IPR004216 L-fucose/L-arabinose isomerase, C-terminal IPR009015 L-fucose isomerase, N-terminal/central domain superfamily IPR003762 L-arabinose isomerase IPR003313 AraC-type arabinose-binding/dimerisation domain IPR009057 Homeobox-like domain superfamily IPR037923 Transcription regulator HTH-like IPR018060 DNA binding HTH domain, AraC-type IPR018062 HTH domain AraC-type, conserved site IPR020449 Transcription regulator HTH, AraC- type IPR015946 K homology domain-like, alpha/beta IPR019953 Organic hydroperoxide resistance protein famiy IPR003718 OsmC/Ohr family IPR036102 OsmC/Ohr superfamily IPR000835 MarR-type HTH domain IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR017559 Alkyl hydroperoxide reductase subunit C IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant IPR024706 Peroxiredoxin, AhpC-type IPR019479 Peroxiredoxin, C-terminal IPR036249 Thioredoxin-like superfamily IPR013766 Thioredoxin domain IPR012081 Alkyl hydroperoxide reductase subunit F IPR036188 FAD/NAD(P)-binding domain superfamily IPR023753 FAD/NAD(P)-binding domain IPR002109 Glutaredoxin IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site IPR012336 Thioredoxin-like fold IPR036249 Thioredoxin-like superfamily IPR029062 Class I glutamine amidotransferase-like IPR002818 DJ-1/PfpI IPR009057 Homeobox-like domain superfamily IPR018060 DNA binding HTH domain, AraC-type IPR018062 HTH domain AraC-type, conserved site IPR039425 RNA polymerase sigma-70 like IPR014284 RNA polymerase sigma-70 like domain IPR007627 RNA polymerase sigma-70 region 2 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 IPR013325 RNA polymerase sigma factor, region 2 IPR013324 RNA polymerase sigma factor, region 3/4-like IPR036388 Winged helix-like DNA-binding domain superfamily IPR011781 D-serine deaminase transcriptional activator IPR005119 LysR, substrate-binding IPR000847 Transcription regulator HTH, LysR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR005163 3-alpha domain IPR005302 Molybdenum cofactor sulfurase, C-terminal IPR011037 Pyruvate kinase-like, insert domain superfamily IPR004628 Mannonate dehydratase IPR036237 Xylose isomerase-like superfamily IPR011711 GntR, C-terminal IPR008920 Transcription regulator FadR/GntR, C-terminal IPR000524 Transcription regulator HTH, GntR IPR036388 Winged helix-like DNA-binding domain superfamily IPR036390 Winged helix DNA-binding domain superfamily IPR004682 TRAP transporter solute receptor, DctP family IPR018389 TRAP transporter solute receptor DctP/TeaA IPR038404 TRAP transporter solute receptor DctP superfamily IPR007387 TRAP transporter, small membrane protein DctQ IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit IPR004681 TRAP transporter large membrane protein DctM IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily IPR013328 6-phosphogluconate dehydrogenase, domain 2 IPR000669 Mannitol dehydrogenase IPR013118 Mannitol dehydrogenase, C-terminal IPR023027 Mannitol dehydrogenase, conserved site IPR013131 Mannitol dehydrogenase, N-terminal IPR036291 NAD(P)-binding domain superfamily IPR032466 Metal-dependent hydrolase IPR003766 Uronate isomerase IPR002173 Carbohydrate/puine kinase, PfkB, conserved site IPR011611 Carbohydrate kinase PfkB IPR029056 Ribokinase-like IPR038377 Sodium/glucose symporter superfamily IPR011851 Sodium/proline symporter IPR001734 Sodium/solute symporter IPR018212 Sodium/solute symporter, conserved site IPR016161 Aldehyde/histidinol dehydrogenase IPR016163 Aldehyde dehydrogenase, C-terminal IPR016160 Aldehyde dehydrogenase, cysteine active site IPR029510 Aldehyde dehydrogenase, glutamic acid active site IPR016162 Aldehyde dehydrogenase, N-terminal IPR015590 Aldehyde dehydrogenase domain IPR013321 Arc-type ribbon-helix-helix IPR025703 Bifunctional protein PutA IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 IPR029041 FAD-linked oxidoreductase-like IPR041349 Proline utilization A proline dehydrogenase N-terminal domain IPR024090 Proline dehydrogenase PutA, domain I IPR024089 Proline dehydrogenase PutA, domain I/II IPR024082 Proline dehydrogenase PutA, domain II IPR002872 Proline dehydrogenase domain IPR010985 Ribbon-helix-helix IPR009057 Homeobox-like domain superfamily IPR018060 DNA binding HTH domain, AraC-type IPR018062 HTH domain AraC-type, conserved site IPR014710 RmlC-like jelly roll fold IPR011051 RmlC-like cupin domain superfamily IPR020449 Transcription regulator HTH, AraC- type IPR000659 Pyridoxamine 5'-phosphate oxidase IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site IPR011576 Pyridoxamine 5'-phosphate oxidase, putative IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal IPR012349 FMN-binding split barrel IPR006144 Secretion protein HlyD, conserved site IPR010129 Type I secretion membrane fusion protein, HlyD family IPR003593 AAA+ ATPase domain IPR011527 ABC transporter type 1, transmembrane domain IPR036640 ABC transporter type 1, transmembrane domain superfamily IPR003439 ABC transporter-like IPR017871 ABC transporter, conserved site IPR010132 ATPase, type I secretion system, HlyB IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR005074 Peptidase C39, bacteriocin processing IPR039395 Peptidase C39-like A IPR039421 Type I protein exporter IPR008254 Flavodoxin/nitric oxide synthase IPR029039 Flavoprotein-like superfamily IPR010089 Flavoprotein WrbA-like IPR005025 NADPH-dependent FMN reductase-like IPR037513 NAD(P)H dehydrogenase (quinone), prokaryotic IPR030678 Peptide/nickel binding protein, MppA-type IPR039424 Solute-binding protein family 5 IPR023765 Solute-binding protein family 5, conserved site IPR000914 Solute-binding protein family 5 domain IPR000834 Peptidase M14, carboxypeptidase A IPR009057 Homeobox-like domain superfamily IPR000281 Helix-turn-helix protein RpiR IPR035472 RpiR-like, SIS domain IPR001347 Sugar isomerase (SIS) IPR022821 Transcription regulator HTH, MurR IPR036388 Winged helix-like DNA-binding domain superfamily IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ IPR005486 Glucokinase regulatory protein, conserved site IPR040190 N-acetylmuramic acid 6-phosphate etherase/glucokinase regulatory protein IPR001347 Sugar isomerase (SIS) IPR036878 Glucose permease domain IIB IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site IPR003352 Phosphotransferase system, EIIC IPR013013 Phosphotransferase system, EIIC component, type 1 IPR001996 Phosphotransferase system, IIB component, type 1 IPR033900 Porin domain, Gram-negative type IPR023614 Porin domain superfamily IPR001897 Porin, gammaproteobacterial IPR001702 Porin, Gram-negative type IPR029062 Class I glutamine amidotransferase-like IPR005320 Peptidase S51 IPR001451 Hexapeptide repeat IPR018357 Hexapeptide transferase, conserved site IPR011004 Trimeric LpxA-like superfamily IPR016181 Acyl-CoA N-acyltransferase IPR000182 GNAT domain IPR007807 Helicase domain IPR027417 P-loop containing nucleoside triphosphate hydrolase IPR032672 TmcA/NAT10/Kre33 IPR024914 tRNA(Met) cytidine acetyltransferase TmcA IPR004437 ParB/RepB/Spo0J partition protein IPR003115 ParB/Sulfiredoxin IPR036086 ParB/Sulfiredoxin superfamily IPR014884 ParB protein family, C-terminal IPR025669 AAA domain IPR041250 ParA helix turn helix domain IPR027417 P-loop containing nucleoside triphosphate hydrolase