DA442_00005 PF00308 Bacterial dnaA protein DA442_00005 PF08299 Bacterial dnaA protein helix-turn-helix DA442_00005 PF11638 DnaA N-terminal domain DA442_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain DA442_00010 PF02767 DNA polymerase III beta subunit, central domain DA442_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain DA442_00015 PF02463 RecF/RecN/SMC N terminal domain DA442_00020 PF00204 DNA gyrase B DA442_00020 PF00986 DNA gyrase B subunit, carboxyl terminus DA442_00020 PF01751 Toprim domain DA442_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_00030 PF01272 Transcription elongation factor, GreA/GreB, C-term DA442_00040 PF00011 Hsp20/alpha crystallin family DA442_00045 PF00155 Aminotransferase class I and II DA442_00050 PF00128 Alpha amylase, catalytic domain DA442_00055 PF02092 DA442_00055 DA442_00055 PF05746 DALR anticodon binding domain DA442_00060 PF02091 Glycyl-tRNA synthetase alpha subunit DA442_00065 PF01169 DA442_00065 DA442_00075 PF01206 Sulfurtransferase TusA DA442_00085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_00085 PF03466 LysR substrate binding domain DA442_00090 PF00107 Zinc-binding dehydrogenase DA442_00090 PF08240 Alcohol dehydrogenase GroES-like domain DA442_00095 PF00108 Thiolase, N-terminal domain DA442_00095 PF02803 Thiolase, C-terminal domain DA442_00100 PF00378 Enoyl-CoA hydratase/isomerase family DA442_00100 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DA442_00100 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DA442_00105 PF01205 Uncharacterized protein family UPF0029 DA442_00105 PF09186 Domain of unknown function (DUF1949) DA442_00110 PF02386 Cation transport protein DA442_00115 PF12724 Flavodoxin domain DA442_00160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_00160 PF03466 LysR substrate binding domain DA442_00165 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DA442_00165 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain DA442_00170 PF04380 DA442_00170 DA442_00180 PF00873 AcrB/AcrD/AcrF family DA442_00185 PF16576 DA442_00185 DA442_00190 PF00440 Bacterial regulatory proteins, tetR family DA442_00190 PF16295 DA442_00190 DA442_00195 PF00580 UvrD/REP helicase N-terminal domain DA442_00195 PF13361 UvrD-like helicase C-terminal domain DA442_00200 PF13442 Cytochrome C oxidase, cbb3-type, subunit III DA442_00235 PF13419 Haloacid dehalogenase-like hydrolase DA442_00250 PF00005 ABC transporter DA442_00250 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DA442_00255 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DA442_00260 PF00528 Binding-protein-dependent transport system inner membrane component DA442_00265 PF00528 Binding-protein-dependent transport system inner membrane component DA442_00265 PF12911 DA442_00265 DA442_00275 PF05036 Sporulation related domain DA442_00290 PF07638 ECF sigma factor DA442_00300 PF00069 Protein kinase domain DA442_00305 PF00356 Bacterial regulatory proteins, lacI family DA442_00305 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DA442_00310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_00310 PF03466 LysR substrate binding domain DA442_00315 PF00893 Small Multidrug Resistance protein DA442_00320 PF00893 Small Multidrug Resistance protein DA442_00325 PF00920 Dehydratase family DA442_00330 PF01202 Shikimate kinase DA442_00335 PF02447 DA442_00335 DA442_00340 PF01081 KDPG and KHG aldolase DA442_00345 PF01048 Phosphorylase superfamily DA442_00350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_00350 PF03466 LysR substrate binding domain DA442_00355 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DA442_00355 PF07992 Pyridine nucleotide-disulphide oxidoreductase DA442_00360 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ DA442_00370 PF01432 Peptidase family M3 DA442_00375 PF01037 AsnC family DA442_00375 PF13404 AsnC-type helix-turn-helix domain DA442_00380 PF00563 EAL domain DA442_00380 PF00990 GGDEF domain DA442_00380 PF04392 ABC transporter substrate binding protein DA442_00380 PF13426 PAS domain DA442_00385 PF04445 Putative SAM-dependent methyltransferase DA442_00395 PF00892 EamA-like transporter family DA442_00400 PF00582 Universal stress protein family DA442_00405 PF00210 Ferritin-like domain DA442_00410 PF10625 DA442_00410 DA442_00415 PF03486 HI0933-like protein DA442_00420 PF00158 Sigma-54 interaction domain DA442_00420 PF02954 Bacterial regulatory protein, Fis family DA442_00425 PF04972 BON domain DA442_00430 PF07043 DA442_00430 DA442_00445 PF00781 Diacylglycerol kinase catalytic domain DA442_00445 PF00782 Dual specificity phosphatase, catalytic domain DA442_00455 PF09537 Domain of unknown function (DUF2383) DA442_00465 PF07332 DA442_00465 DA442_00475 PF01594 DA442_00475 DA442_00480 PF00563 EAL domain DA442_00480 PF00989 PAS fold DA442_00480 PF00990 GGDEF domain DA442_00480 PF08448 PAS fold DA442_00485 PF00892 EamA-like transporter family DA442_00490 PF02646 DA442_00490 DA442_00495 PF01209 ubiE/COQ5 methyltransferase family DA442_00500 PF02036 SCP-2 sterol transfer family DA442_00505 PF03109 DA442_00505 DA442_00510 PF02416 mttA/Hcf106 family DA442_00515 PF02416 mttA/Hcf106 family DA442_00520 PF00902 Sec-independent protein translocase protein (TatC) DA442_00530 PF01026 TatD related DNase DA442_00540 PF00490 Delta-aminolevulinic acid dehydratase DA442_00545 PF00583 Acetyltransferase (GNAT) family DA442_00555 PF00476 DNA polymerase family A DA442_00555 PF01367 5'-3' exonuclease, C-terminal SAM fold DA442_00555 PF01612 3'-5' exonuclease DA442_00555 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DA442_00565 PF01926 50S ribosome-binding GTPase DA442_00570 PF00034 Cytochrome c DA442_00585 PF13489 Methyltransferase domain DA442_00590 PF04220 DA442_00590 DA442_00595 PF10675 DA442_00595 DA442_00600 PF04055 Radical SAM superfamily DA442_00600 PF06969 HemN C-terminal domain DA442_00605 PF00962 Adenosine/AMP deaminase DA442_00610 PF00563 EAL domain DA442_00610 PF00672 HAMP domain DA442_00610 PF00990 GGDEF domain DA442_00610 PF02743 Cache domain DA442_00615 PF00072 Response regulator receiver domain DA442_00615 PF00158 Sigma-54 interaction domain DA442_00615 PF02954 Bacterial regulatory protein, Fis family DA442_00620 PF00512 His Kinase A (phospho-acceptor) domain DA442_00620 PF00989 PAS fold DA442_00620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_00625 PF13511 DA442_00625 DA442_00630 PF00120 Glutamine synthetase, catalytic domain DA442_00630 PF03951 Glutamine synthetase, beta-Grasp domain DA442_00640 PF00009 Elongation factor Tu GTP binding domain DA442_00640 PF00679 Elongation factor G C-terminus DA442_00640 PF03144 Elongation factor Tu domain 2 DA442_00645 PF13521 AAA domain DA442_00650 PF11172 DA442_00650 DA442_00660 PF02580 D-Tyr-tRNA(Tyr) deacylase DA442_00665 PF00583 Acetyltransferase (GNAT) family DA442_00665 PF09500 Putative thioesterase (yiiD_Cterm) DA442_00670 PF05170 DA442_00670 DA442_00675 PF01293 Phosphoenolpyruvate carboxykinase DA442_00680 PF01430 Hsp33 protein DA442_00685 PF01479 S4 domain DA442_00690 PF11356 Type IV pilus biogenesis DA442_00695 PF00263 DA442_00695 DA442_00695 PF03958 Bacterial type II/III secretion system short domain DA442_00700 PF00437 Type II/IV secretion system protein DA442_00705 PF00482 Type II secretion system (T2SS), protein F DA442_00710 PF07963 Prokaryotic N-terminal methylation motif DA442_00710 PF08334 Type II secretion system (T2SS), protein G DA442_00715 PF07963 Prokaryotic N-terminal methylation motif DA442_00715 PF12019 Type II transport protein GspH DA442_00720 PF02501 Type II secretion system (T2SS), protein I DA442_00725 PF07963 Prokaryotic N-terminal methylation motif DA442_00725 PF11612 Type II secretion system (T2SS), protein J DA442_00730 PF03934 Type II secretion system (T2SS), protein K DA442_00735 PF05134 Type II secretion system (T2SS), protein L DA442_00735 PF12693 GspL periplasmic domain DA442_00740 PF04612 Type II secretion system (T2SS), protein M DA442_00745 PF01203 DA442_00745 DA442_00750 PF00459 Inositol monophosphatase family DA442_00755 PF00293 NUDIX domain DA442_00760 PF01106 NifU-like domain DA442_00760 PF01521 Iron-sulphur cluster biosynthesis DA442_00765 PF00156 Phosphoribosyl transferase domain DA442_00770 PF00561 alpha/beta hydrolase fold DA442_00780 PF00575 S1 RNA binding domain DA442_00780 PF09371 Tex-like protein N-terminal domain DA442_00780 PF12836 Helix-hairpin-helix motif DA442_00780 PF16921 DA442_00780 DA442_00785 PF05618 Putative ATP-dependant zinc protease DA442_00790 PF01272 Transcription elongation factor, GreA/GreB, C-term DA442_00790 PF03449 Transcription elongation factor, N-terminal DA442_00795 PF06476 DA442_00795 DA442_00800 PF00072 Response regulator receiver domain DA442_00800 PF00486 Transcriptional regulatory protein, C terminal DA442_00805 PF00512 His Kinase A (phospho-acceptor) domain DA442_00805 PF00672 HAMP domain DA442_00805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_00810 PF00860 Permease family DA442_00820 PF00270 DEAD/DEAH box helicase DA442_00820 PF00271 Helicase conserved C-terminal domain DA442_00820 PF17191 DA442_00820 DA442_00825 PF00588 SpoU rRNA Methylase family DA442_00825 PF12105 SpoU, rRNA methylase, C-terminal DA442_00830 PF02824 TGS domain DA442_00830 PF04607 Region found in RelA / SpoT proteins DA442_00830 PF13291 ACT domain DA442_00830 PF13328 HD domain DA442_00835 PF01192 RNA polymerase Rpb6 DA442_00840 PF00625 Guanylate kinase DA442_00845 PF13181 Tetratricopeptide repeat DA442_00850 PF03544 Gram-negative bacterial TonB protein C-terminal DA442_00855 PF02472 Biopolymer transport protein ExbD/TolR DA442_00860 PF01618 DA442_00860 DA442_00865 PF01618 DA442_00865 DA442_00870 PF11932 DA442_00870 DA442_00875 PF00593 TonB dependent receptor DA442_00875 PF07715 TonB-dependent Receptor Plug Domain DA442_00885 PF00528 Binding-protein-dependent transport system inner membrane component DA442_00890 PF00528 Binding-protein-dependent transport system inner membrane component DA442_00895 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DA442_00900 PF00005 ABC transporter DA442_00900 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DA442_00905 PF00005 ABC transporter DA442_00910 PF06146 DA442_00910 DA442_00920 PF12728 Helix-turn-helix domain DA442_00925 PF06048 DA442_00925 DA442_00950 PF12835 Integrase DA442_00955 PF01935 Domain of unknown function DUF87 DA442_00965 PF02086 D12 class N6 adenine-specific DNA methyltransferase DA442_00975 PF00589 Phage integrase family DA442_00975 PF13356 Domain of unknown function (DUF4102) DA442_00980 PF03755 DA442_00980 DA442_00980 PF08340 DA442_00980 DA442_00985 PF01138 3' exoribonuclease family, domain 1 DA442_00985 PF03725 3' exoribonuclease family, domain 2 DA442_00990 PF00156 Phosphoribosyl transferase domain DA442_00995 PF03279 DA442_00995 DA442_01000 PF00440 Bacterial regulatory proteins, tetR family DA442_01005 PF02441 Flavoprotein DA442_01005 PF04127 DNA / pantothenate metabolism flavoprotein DA442_01015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_01015 PF00672 HAMP domain DA442_01015 PF17200 DA442_01015 DA442_01020 PF04002 RadC-like JAB domain DA442_01025 PF00830 Ribosomal L28 family DA442_01030 PF00471 Ribosomal protein L33 DA442_01035 PF00884 Sulfatase DA442_01045 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DA442_01045 PF06827 Zinc finger found in FPG and IleRS DA442_01045 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DA442_01050 PF01467 Cytidylyltransferase DA442_01055 PF05686 DA442_01055 DA442_01060 PF00535 Glycosyl transferase family 2 DA442_01060 PF02709 N-terminal domain of galactosyltransferase DA442_01065 PF00535 Glycosyl transferase family 2 DA442_01070 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DA442_01075 PF01219 Prokaryotic diacylglycerol kinase DA442_01080 PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family DA442_01085 PF02719 Polysaccharide biosynthesis protein DA442_01090 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DA442_01095 PF02350 UDP-N-acetylglucosamine 2-epimerase DA442_01105 PF00132 Bacterial transferase hexapeptide (six repeats) DA442_01110 PF00483 Nucleotidyl transferase DA442_01110 PF00571 CBS domain DA442_01115 PF02348 Cytidylyltransferase DA442_01120 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DA442_01125 PF00202 Aminotransferase class-III DA442_01130 PF00795 Carbon-nitrogen hydrolase DA442_01135 PF13561 Enoyl-(Acyl carrier protein) reductase DA442_01150 PF01755 DA442_01150 DA442_01155 PF00534 Glycosyl transferases group 1 DA442_01155 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) DA442_01160 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DA442_01165 PF03279 DA442_01165 DA442_01170 PF01370 NAD dependent epimerase/dehydratase family DA442_01175 PF06082 DA442_01175 DA442_01180 PF06251 Capsule biosynthesis GfcC DA442_01185 PF11102 Group 4 capsule polysaccharide formation lipoprotein gfcB DA442_01195 PF13505 Outer membrane protein beta-barrel domain DA442_01200 PF02563 Polysaccharide biosynthesis/export protein DA442_01200 PF06251 Capsule biosynthesis GfcC DA442_01200 PF10531 SLBB domain DA442_01205 PF02706 Chain length determinant protein DA442_01210 PF08282 haloacid dehalogenase-like hydrolase DA442_01235 PF01943 DA442_01235 DA442_01235 PF14667 Polysaccharide biosynthesis C-terminal domain DA442_01250 PF01531 DA442_01250 DA442_01260 PF13524 Glycosyl transferases group 1 DA442_01265 PF00534 Glycosyl transferases group 1 DA442_01270 PF16363 DA442_01270 DA442_01275 PF01370 NAD dependent epimerase/dehydratase family DA442_01280 PF00293 NUDIX domain DA442_01285 PF00483 Nucleotidyl transferase DA442_01285 PF01050 Mannose-6-phosphate isomerase DA442_01290 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DA442_01290 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DA442_01290 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DA442_01290 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DA442_01295 PF01238 Phosphomannose isomerase type I DA442_01305 PF01370 NAD dependent epimerase/dehydratase family DA442_01310 PF02397 DA442_01310 DA442_01315 PF02719 Polysaccharide biosynthesis protein DA442_01315 PF13727 CoA-binding domain DA442_01320 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DA442_01320 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DA442_01320 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DA442_01325 PF16363 DA442_01325 DA442_01330 PF00753 Metallo-beta-lactamase superfamily DA442_01330 PF07521 RNA-metabolising metallo-beta-lactamase DA442_01330 PF10996 Beta-Casp domain DA442_01335 PF00121 Triosephosphate isomerase DA442_01340 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase DA442_01345 PF05656 DA442_01345 DA442_01350 PF11333 DA442_01350 DA442_01355 PF13412 Winged helix-turn-helix DNA-binding DA442_01360 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded DA442_01370 PF06005 Protein of unknown function (DUF904) DA442_01375 PF03737 Demethylmenaquinone methyltransferase DA442_01380 PF01040 UbiA prenyltransferase family DA442_01385 PF00004 ATPase family associated with various cellular activities (AAA) DA442_01385 PF07724 AAA domain (Cdc48 subfamily) DA442_01385 PF10431 C-terminal, D2-small domain, of ClpB protein DA442_01390 PF00227 Proteasome subunit DA442_01395 PF05036 Sporulation related domain DA442_01400 PF00356 Bacterial regulatory proteins, lacI family DA442_01400 PF13377 Periplasmic binding protein-like domain DA442_01405 PF00270 DEAD/DEAH box helicase DA442_01405 PF00271 Helicase conserved C-terminal domain DA442_01415 PF01197 Ribosomal protein L31 DA442_01420 PF00338 Ribosomal protein S10p/S20e DA442_01425 PF00297 Ribosomal protein L3 DA442_01430 PF00573 Ribosomal protein L4/L1 family DA442_01435 PF00276 Ribosomal protein L23 DA442_01440 PF00181 Ribosomal Proteins L2, RNA binding domain DA442_01440 PF03947 Ribosomal Proteins L2, C-terminal domain DA442_01445 PF00203 Ribosomal protein S19 DA442_01450 PF00237 Ribosomal protein L22p/L17e DA442_01455 PF00189 Ribosomal protein S3, C-terminal domain DA442_01455 PF07650 KH domain DA442_01460 PF00252 Ribosomal protein L16p/L10e DA442_01465 PF00831 Ribosomal L29 protein DA442_01470 PF00366 Ribosomal protein S17 DA442_01475 PF00238 Ribosomal protein L14p/L23e DA442_01480 PF00467 KOW motif DA442_01480 PF17136 DA442_01480 DA442_01485 PF00281 Ribosomal protein L5 DA442_01485 PF00673 ribosomal L5P family C-terminus DA442_01490 PF00253 Ribosomal protein S14p/S29e DA442_01495 PF00410 Ribosomal protein S8 DA442_01500 PF00347 Ribosomal protein L6 DA442_01505 PF00861 Ribosomal L18p/L5e family DA442_01510 PF00333 Ribosomal protein S5, N-terminal domain DA442_01510 PF03719 Ribosomal protein S5, C-terminal domain DA442_01515 PF00327 Ribosomal protein L30p/L7e DA442_01520 PF00828 Ribosomal protein L18e/L15 DA442_01525 PF00344 SecY translocase DA442_01530 PF00444 Ribosomal protein L36 DA442_01535 PF00416 Ribosomal protein S13/S18 DA442_01540 PF00411 Ribosomal protein S11 DA442_01545 PF00163 Ribosomal protein S4/S9 N-terminal domain DA442_01545 PF01479 S4 domain DA442_01550 PF01000 RNA polymerase Rpb3/RpoA insert domain DA442_01550 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DA442_01550 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DA442_01555 PF01196 Ribosomal protein L17 DA442_01560 PF11075 DA442_01560 DA442_01565 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DA442_01565 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DA442_01570 PF04225 Opacity-associated protein A LysM-like domain DA442_01570 PF08525 DA442_01570 DA442_01575 PF13673 Acetyltransferase (GNAT) domain DA442_01580 PF00270 DEAD/DEAH box helicase DA442_01580 PF00271 Helicase conserved C-terminal domain DA442_01580 PF03880 DbpA RNA binding domain DA442_01585 PF00027 Cyclic nucleotide-binding domain DA442_01590 PF00149 Calcineurin-like phosphoesterase DA442_01590 PF02872 5'-nucleotidase, C-terminal domain DA442_01595 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DA442_01600 PF01507 Phosphoadenosine phosphosulfate reductase family DA442_01605 PF00009 Elongation factor Tu GTP binding domain DA442_01615 PF02080 TrkA-C domain DA442_01615 PF03600 Citrate transporter DA442_01620 PF01583 Adenylylsulphate kinase DA442_01625 PF10987 DA442_01625 DA442_01630 PF11736 Protein of unknown function (DUF3299) DA442_01635 PF02687 DA442_01635 DA442_01635 PF12704 MacB-like periplasmic core domain DA442_01640 PF00005 ABC transporter DA442_01645 PF10986 DA442_01645 DA442_01650 PF10795 DA442_01650 DA442_01660 PF06526 Protein of unknown function (DUF1107) DA442_01665 PF01625 Peptide methionine sulfoxide reductase DA442_01675 PF04357 DA442_01675 DA442_01680 PF06094 AIG2-like family DA442_01685 PF10973 DA442_01685 DA442_01690 PF00719 Inorganic pyrophosphatase DA442_01695 PF00316 Fructose-1-6-bisphosphatase DA442_01705 PF01225 Mur ligase family, catalytic domain DA442_01705 PF02875 Mur ligase family, glutamate ligase domain DA442_01705 PF08245 Mur ligase middle domain DA442_01710 PF02441 Flavoprotein DA442_01715 PF13343 Bacterial extracellular solute-binding protein DA442_01720 PF00528 Binding-protein-dependent transport system inner membrane component DA442_01725 PF00005 ABC transporter DA442_01730 PF00582 Universal stress protein family DA442_01735 PF06808 DA442_01735 DA442_01735 PF11874 DA442_01735 DA442_01745 PF16868 DA442_01745 DA442_01755 PF01316 Arginine repressor, DNA binding domain DA442_01755 PF02863 Arginine repressor, C-terminal domain DA442_01760 PF00056 lactate/malate dehydrogenase, NAD binding domain DA442_01760 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DA442_01770 PF00348 Polyprenyl synthetase DA442_01775 PF00829 Ribosomal prokaryotic L21 protein DA442_01780 PF01016 Ribosomal L27 protein DA442_01785 PF01018 GTP1/OBG DA442_01785 PF01926 50S ribosome-binding GTPase DA442_01790 PF06738 DA442_01790 DA442_01795 PF12821 DA442_01795 DA442_01800 PF00186 Dihydrofolate reductase DA442_01805 PF00149 Calcineurin-like phosphoesterase DA442_01810 PF04379 Protein of unknown function (DUF525) DA442_01815 PF00398 Ribosomal RNA adenine dimethylase DA442_01820 PF04166 Pyridoxal phosphate biosynthetic protein PdxA DA442_01825 PF09312 SurA N-terminal domain DA442_01825 PF13616 PPIC-type PPIASE domain DA442_01830 PF03968 OstA-like protein DA442_01830 PF04453 Organic solvent tolerance protein DA442_01835 PF00226 DnaJ domain DA442_01835 PF05099 Tellurite resistance protein TerB DA442_01840 PF04784 DA442_01840 DA442_01845 PF00694 Aconitase C-terminal domain DA442_01850 PF00330 Aconitase family (aconitate hydratase) DA442_01855 PF00180 Isocitrate/isopropylmalate dehydrogenase DA442_01860 PF00682 HMGL-like DA442_01860 PF08502 LeuA allosteric (dimerisation) domain DA442_01870 PF08239 Bacterial SH3 domain DA442_01875 PF01569 PAP2 superfamily DA442_01885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_01885 PF03466 LysR substrate binding domain DA442_01890 PF00501 AMP-binding enzyme DA442_01895 PF00205 Thiamine pyrophosphate enzyme, central domain DA442_01895 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DA442_01895 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DA442_01900 PF10369 Small subunit of acetolactate synthase DA442_01900 PF13710 ACT domain DA442_01905 PF00990 GGDEF domain DA442_01905 PF02743 Cache domain DA442_01905 PF13426 PAS domain DA442_01910 PF00392 Bacterial regulatory proteins, gntR family DA442_01910 PF07729 FCD domain DA442_01915 PF00224 Pyruvate kinase, barrel domain DA442_01915 PF02887 Pyruvate kinase, alpha/beta domain DA442_01925 PF00455 DA442_01925 DA442_01925 PF08220 DeoR-like helix-turn-helix domain DA442_01930 PF01380 SIS domain DA442_01930 PF13522 Glutamine amidotransferase domain DA442_01935 PF11777 DA442_01935 DA442_01940 PF00072 Response regulator receiver domain DA442_01940 PF00486 Transcriptional regulatory protein, C terminal DA442_01945 PF00512 His Kinase A (phospho-acceptor) domain DA442_01945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_01950 PF13419 Haloacid dehalogenase-like hydrolase DA442_01955 PF05068 Mannitol repressor DA442_01960 PF01232 Mannitol dehydrogenase Rossmann domain DA442_01960 PF08125 Mannitol dehydrogenase C-terminal domain DA442_01965 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DA442_01965 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DA442_01965 PF02378 Phosphotransferase system, EIIC DA442_01975 PF13444 Acetyltransferase (GNAT) domain DA442_01985 PF04402 Protein of unknown function (DUF541) DA442_01990 PF14321 DA442_01990 DA442_02000 PF12833 Helix-turn-helix domain DA442_02010 PF03180 NLPA lipoprotein DA442_02015 PF00589 Phage integrase family DA442_02015 PF13356 Domain of unknown function (DUF4102) DA442_02040 PF14072 DA442_02040 DA442_02045 PF05930 Prophage CP4-57 regulatory protein (AlpA) DA442_02050 PF05272 DA442_02050 DA442_02055 PF05930 Prophage CP4-57 regulatory protein (AlpA) DA442_02065 PF05638 Protein of unknown function (DUF796) DA442_02075 PF12834 DA442_02075 DA442_02075 PF12835 Integrase DA442_02085 PF00140 Sigma-70 factor, region 1 DA442_02085 PF03979 Sigma-70 factor, region 1 DA442_02085 PF04539 Sigma-70 region 3 DA442_02085 PF04542 Sigma-70 region 2 DA442_02085 PF04545 Sigma-70, region 4 DA442_02085 PF04546 Sigma-70, non-essential region DA442_02090 PF01807 CHC2 zinc finger DA442_02090 PF08275 DNA primase catalytic core, N-terminal domain DA442_02090 PF08278 DNA primase DnaG DnaB-binding DA442_02090 PF10410 DnaB-helicase binding domain of primase DA442_02090 PF13155 Toprim-like DA442_02095 PF09424 Yqey-like protein DA442_02100 PF01165 Ribosomal protein S21 DA442_02105 PF00814 Glycoprotease family DA442_02110 PF00561 alpha/beta hydrolase fold DA442_02115 PF02660 DA442_02115 DA442_02120 PF02152 Dihydroneopterin aldolase DA442_02125 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DA442_02130 PF02673 DA442_02130 DA442_02135 PF01743 Poly A polymerase head domain DA442_02135 PF01966 HD domain DA442_02135 PF12627 Probable RNA and SrmB- binding site of polymerase A DA442_02140 PF01471 Putative peptidoglycan binding domain DA442_02140 PF13401 AAA domain DA442_02145 PF16537 DA442_02145 DA442_02150 PF08239 Bacterial SH3 domain DA442_02155 PF01384 DA442_02155 DA442_02160 PF01865 Protein of unknown function DUF47 DA442_02165 PF01928 CYTH domain DA442_02165 PF05235 CHAD domain DA442_02170 PF07885 Ion channel DA442_02175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_02180 PF03710 Glutamate-ammonia ligase adenylyltransferase DA442_02180 PF08335 GlnD PII-uridylyltransferase DA442_02185 PF00294 pfkB family carbohydrate kinase DA442_02185 PF01467 Cytidylyltransferase DA442_02190 PF02321 Outer membrane efflux protein DA442_02195 PF00293 NUDIX domain DA442_02200 PF06853 DA442_02200 DA442_02205 PF00149 Calcineurin-like phosphoesterase DA442_02210 PF05728 Uncharacterised protein family (UPF0227) DA442_02215 PF00204 DNA gyrase B DA442_02215 PF00986 DNA gyrase B subunit, carboxyl terminus DA442_02215 PF01751 Toprim domain DA442_02215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_02220 PF00521 DNA gyrase/topoisomerase IV, subunit A DA442_02220 PF03989 DNA gyrase C-terminal domain, beta-propeller DA442_02225 PF13180 PDZ domain DA442_02225 PF13365 Trypsin-like peptidase domain DA442_02230 PF00595 PDZ domain (Also known as DHR or GLGF) DA442_02230 PF13180 PDZ domain DA442_02230 PF13365 Trypsin-like peptidase domain DA442_02235 PF06295 DA442_02235 DA442_02245 PF03969 AFG1-like ATPase DA442_02255 PF00572 Ribosomal protein L13 DA442_02260 PF00380 Ribosomal protein S9/S16 DA442_02265 PF00355 Rieske [2Fe-2S] domain DA442_02265 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal DA442_02270 PF00032 Cytochrome b(C-terminal)/b6/petD DA442_02270 PF00033 Cytochrome b(N-terminal)/b6/petB DA442_02275 PF02167 Cytochrome C1 family DA442_02280 PF00043 Glutathione S-transferase, C-terminal domain DA442_02280 PF13417 Glutathione S-transferase, N-terminal domain DA442_02285 PF04386 Stringent starvation protein B DA442_02290 PF04972 BON domain DA442_02295 PF13580 SIS domain DA442_02300 PF02021 Uncharacterised protein family UPF0102 DA442_02305 PF04348 LppC putative lipoprotein DA442_02310 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DA442_02325 PF01795 MraW methylase family DA442_02330 PF04999 DA442_02330 DA442_02335 PF00905 Penicillin binding protein transpeptidase domain DA442_02335 PF03717 Penicillin-binding Protein dimerisation domain DA442_02340 PF01225 Mur ligase family, catalytic domain DA442_02340 PF02875 Mur ligase family, glutamate ligase domain DA442_02340 PF08245 Mur ligase middle domain DA442_02345 PF01225 Mur ligase family, catalytic domain DA442_02345 PF02875 Mur ligase family, glutamate ligase domain DA442_02345 PF08245 Mur ligase middle domain DA442_02350 PF00953 Glycosyl transferase family 4 DA442_02350 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 DA442_02355 PF02875 Mur ligase family, glutamate ligase domain DA442_02355 PF08245 Mur ligase middle domain DA442_02360 PF01098 DA442_02360 DA442_02365 PF03033 Glycosyltransferase family 28 N-terminal domain DA442_02365 PF04101 Glycosyltransferase family 28 C-terminal domain DA442_02370 PF01225 Mur ligase family, catalytic domain DA442_02370 PF02875 Mur ligase family, glutamate ligase domain DA442_02370 PF08245 Mur ligase middle domain DA442_02375 PF03799 Cell division protein FtsQ DA442_02375 PF08478 POTRA domain, FtsQ-type DA442_02380 PF02491 SHS2 domain inserted in FTSA DA442_02380 PF14450 Cell division protein FtsA DA442_02385 PF00091 Tubulin/FtsZ family, GTPase domain DA442_02385 PF12327 FtsZ family, C-terminal domain DA442_02390 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase DA442_02395 PF05258 DA442_02395 DA442_02400 PF01043 SecA preprotein cross-linking domain DA442_02400 PF02810 SEC-C motif DA442_02400 PF07516 SecA Wing and Scaffold domain DA442_02400 PF07517 SecA DEAD-like domain DA442_02405 PF00293 NUDIX domain DA442_02410 PF01113 Dihydrodipicolinate reductase, N-terminus DA442_02410 PF05173 Dihydrodipicolinate reductase, C-terminus DA442_02415 PF00117 Glutamine amidotransferase class-I DA442_02415 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DA442_02420 PF02142 MGS-like domain DA442_02420 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DA442_02420 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DA442_02435 PF01925 DA442_02435 DA442_02440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_02440 PF03466 LysR substrate binding domain DA442_02445 PF03458 DA442_02445 DA442_02450 PF01497 Periplasmic binding protein DA442_02455 PF03186 DA442_02455 DA442_02460 PF01048 Phosphorylase superfamily DA442_02465 PF07386 DA442_02465 DA442_02470 PF07992 Pyridine nucleotide-disulphide oxidoreductase DA442_02470 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DA442_02475 PF00310 Glutamine amidotransferases class-II DA442_02475 PF01493 GXGXG motif DA442_02475 PF01645 Conserved region in glutamate synthase DA442_02475 PF04898 Glutamate synthase central domain DA442_02480 PF07992 Pyridine nucleotide-disulphide oxidoreductase DA442_02480 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DA442_02485 PF00310 Glutamine amidotransferases class-II DA442_02485 PF01493 GXGXG motif DA442_02485 PF01645 Conserved region in glutamate synthase DA442_02485 PF04898 Glutamate synthase central domain DA442_02490 PF04055 Radical SAM superfamily DA442_02490 PF16199 DA442_02490 DA442_02495 PF00990 GGDEF domain DA442_02495 PF08448 PAS fold DA442_02495 PF13188 PAS domain DA442_02500 PF00072 Response regulator receiver domain DA442_02500 PF00512 His Kinase A (phospho-acceptor) domain DA442_02500 PF01627 Hpt domain DA442_02500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_02500 PF08448 PAS fold DA442_02510 PF00072 Response regulator receiver domain DA442_02510 PF00486 Transcriptional regulatory protein, C terminal DA442_02520 PF11697 DA442_02520 DA442_02525 PF03737 Demethylmenaquinone methyltransferase DA442_02535 PF00696 Amino acid kinase family DA442_02535 PF00742 Homoserine dehydrogenase DA442_02535 PF01842 ACT domain DA442_02535 PF03447 Homoserine dehydrogenase, NAD binding domain DA442_02535 PF13840 ACT domain DA442_02540 PF00288 GHMP kinases N terminal domain DA442_02540 PF08544 GHMP kinases C terminal DA442_02545 PF00291 Pyridoxal-phosphate dependent enzyme DA442_02545 PF14821 Threonine synthase N terminus DA442_02550 PF01228 Glycine radical DA442_02555 PF01261 Xylose isomerase-like TIM barrel DA442_02565 PF03167 Uracil DNA glycosylase superfamily DA442_02570 PF01814 Hemerythrin HHE cation binding domain DA442_02575 PF12065 DA442_02575 DA442_02580 PF01235 DA442_02580 DA442_02585 PF03883 DA442_02585 DA442_02590 PF00270 DEAD/DEAH box helicase DA442_02590 PF00271 Helicase conserved C-terminal domain DA442_02595 PF05175 Methyltransferase small domain DA442_02600 PF05525 DA442_02600 DA442_02605 PF00258 Flavodoxin DA442_02610 PF00589 Phage integrase family DA442_02610 PF02899 Phage integrase, N-terminal SAM-like domain DA442_02615 PF10411 Disulfide bond isomerase protein N-terminus DA442_02615 PF13098 Thioredoxin-like domain DA442_02620 PF01368 DHH family DA442_02620 PF02272 DHHA1 domain DA442_02630 PF00152 tRNA synthetases class II (D, K and N) DA442_02630 PF01336 OB-fold nucleic acid binding domain DA442_02635 PF00158 Sigma-54 interaction domain DA442_02635 PF02954 Bacterial regulatory protein, Fis family DA442_02655 PF02976 DNA mismatch repair enzyme MutH DA442_02665 PF00293 NUDIX domain DA442_02680 PF01790 DA442_02680 DA442_02685 PF00303 Thymidylate synthase DA442_02690 PF08014 DA442_02690 DA442_02695 PF02690 DA442_02695 DA442_02700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_02700 PF03466 LysR substrate binding domain DA442_02710 PF01022 Bacterial regulatory protein, arsR family DA442_02720 PF01649 Ribosomal protein S20 DA442_02725 PF03023 DA442_02725 DA442_02730 PF01687 Riboflavin kinase DA442_02730 PF06574 FAD synthetase DA442_02735 PF00133 tRNA synthetases class I (I, L, M and V) DA442_02735 PF06827 Zinc finger found in FPG and IleRS DA442_02735 PF08264 Anticodon-binding domain of tRNA DA442_02740 PF01252 DA442_02740 DA442_02745 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DA442_02750 PF02401 LytB protein DA442_02755 PF00072 Response regulator receiver domain DA442_02755 PF04397 LytTr DNA-binding domain DA442_02760 PF06580 DA442_02760 DA442_02760 PF07694 5TMR of 5TMR-LYT DA442_02765 PF02554 DA442_02765 DA442_02765 PF13722 DA442_02765 DA442_02770 PF10973 DA442_02770 DA442_02780 PF13580 SIS domain DA442_02790 PF00933 Glycosyl hydrolase family 3 N terminal domain DA442_02795 PF00793 DAHP synthetase I family DA442_02800 PF01817 Chorismate mutase type II DA442_02800 PF02153 Prephenate dehydrogenase DA442_02805 PF01551 Peptidase family M23 DA442_02810 PF07238 PilZ domain DA442_02825 PF01464 Transglycosylase SLT domain DA442_02825 PF14718 Soluble lytic murein transglycosylase L domain DA442_02830 PF01371 Trp repressor protein DA442_02835 PF01931 Protein of unknown function DUF84 DA442_02840 PF00800 Prephenate dehydratase DA442_02840 PF01817 Chorismate mutase type II DA442_02845 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DA442_02850 PF00497 Bacterial extracellular solute-binding proteins, family 3 DA442_02850 PF01464 Transglycosylase SLT domain DA442_02855 PF13525 Outer membrane lipoprotein DA442_02860 PF00849 RNA pseudouridylate synthase DA442_02860 PF01479 S4 domain DA442_02865 PF02578 Multi-copper polyphenol oxidoreductase laccase DA442_02870 PF00004 ATPase family associated with various cellular activities (AAA) DA442_02870 PF02861 Clp amino terminal domain DA442_02870 PF07724 AAA domain (Cdc48 subfamily) DA442_02870 PF10431 C-terminal, D2-small domain, of ClpB protein DA442_02915 PF08921 Domain of unknown function (DUF1904) DA442_02920 PF03411 Penicillin-insensitive murein endopeptidase DA442_02930 PF00037 4Fe-4S binding domain DA442_02935 PF01136 DA442_02935 DA442_02935 PF16325 DA442_02935 DA442_02940 PF04381 Putative exonuclease, RdgC DA442_02950 PF00072 Response regulator receiver domain DA442_02950 PF00486 Transcriptional regulatory protein, C terminal DA442_02955 PF00512 His Kinase A (phospho-acceptor) domain DA442_02955 PF00989 PAS fold DA442_02955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_02955 PF11808 DA442_02955 DA442_02960 PF12849 PBP superfamily domain DA442_02965 PF02541 Ppx/GppA phosphatase family DA442_02970 PF02503 Polyphosphate kinase middle domain DA442_02970 PF13089 Polyphosphate kinase N-terminal domain DA442_02970 PF13090 Polyphosphate kinase C-terminal domain DA442_02980 PF00528 Binding-protein-dependent transport system inner membrane component DA442_02985 PF00005 ABC transporter DA442_02990 PF01895 PhoU domain DA442_02995 PF03976 Polyphosphate kinase 2 (PPK2) DA442_03000 PF03932 CutC family DA442_03010 PF00578 AhpC/TSA family DA442_03010 PF10417 C-terminal domain of 1-Cys peroxiredoxin DA442_03015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_03015 PF03466 LysR substrate binding domain DA442_03025 PF01274 Malate synthase DA442_03030 PF00463 Isocitrate lyase family DA442_03035 PF00571 CBS domain DA442_03045 PF00089 Trypsin DA442_03050 PF02547 Queuosine biosynthesis protein DA442_03055 PF01702 Queuine tRNA-ribosyltransferase DA442_03060 PF02699 Preprotein translocase subunit DA442_03065 PF02355 Protein export membrane protein DA442_03065 PF07549 SecD/SecF GG Motif DA442_03065 PF13721 SecD export protein N-terminal TM region DA442_03070 PF02355 Protein export membrane protein DA442_03070 PF07549 SecD/SecF GG Motif DA442_03080 PF00459 Inositol monophosphatase family DA442_03085 PF00588 SpoU rRNA Methylase family DA442_03090 PF02082 Transcriptional regulator DA442_03095 PF00266 Aminotransferase class-V DA442_03100 PF01592 NifU-like N terminal domain DA442_03105 PF01521 Iron-sulphur cluster biosynthesis DA442_03110 PF00226 DnaJ domain DA442_03110 PF07743 HSCB C-terminal oligomerisation domain DA442_03115 PF00012 Hsp70 protein DA442_03120 PF00111 2Fe-2S iron-sulfur cluster binding domain DA442_03125 PF04384 Iron-sulphur cluster assembly DA442_03130 PF00883 Cytosol aminopeptidase family, catalytic domain DA442_03130 PF12404 DA442_03130 DA442_03135 PF00334 Nucleoside diphosphate kinase DA442_03140 PF04055 Radical SAM superfamily DA442_03150 PF13413 Helix-turn-helix domain DA442_03150 PF13464 DA442_03150 DA442_03155 PF04551 GcpE protein DA442_03160 PF03129 Anticodon binding domain DA442_03160 PF13393 Histidyl-tRNA synthetase DA442_03165 PF09976 Tetratricopeptide repeat DA442_03170 PF13360 PQQ-like domain DA442_03175 PF01926 50S ribosome-binding GTPase DA442_03175 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DA442_03185 PF07191 zinc-ribbons DA442_03190 PF02601 DA442_03190 DA442_03190 PF13742 DA442_03190 DA442_03195 PF00478 IMP dehydrogenase / GMP reductase domain DA442_03195 PF00571 CBS domain DA442_03200 PF00117 Glutamine amidotransferase class-I DA442_03200 PF00958 GMP synthase C terminal domain DA442_03200 PF02540 NAD synthase DA442_03205 PF03553 DA442_03205 DA442_03210 PF00182 Chitinase class I DA442_03215 PF01184 DA442_03215 DA442_03220 PF12710 haloacid dehalogenase-like hydrolase DA442_03225 PF01235 DA442_03225 DA442_03230 PF01266 FAD dependent oxidoreductase DA442_03235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_03235 PF03466 LysR substrate binding domain DA442_03245 PF01764 Lipase (class 3) DA442_03255 PF07969 Amidohydrolase family DA442_03260 PF01053 Cys/Met metabolism PLP-dependent enzyme DA442_03265 PF00202 Aminotransferase class-III DA442_03270 PF05853 Prokaryotic protein of unknown function (DUF849) DA442_03275 PF03553 DA442_03275 DA442_03280 PF09335 DA442_03280 DA442_03285 PF00583 Acetyltransferase (GNAT) family DA442_03285 PF00795 Carbon-nitrogen hydrolase DA442_03290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_03290 PF03466 LysR substrate binding domain DA442_03295 PF13505 Outer membrane protein beta-barrel domain DA442_03310 PF01668 SmpB protein DA442_03315 PF03364 Polyketide cyclase / dehydrase and lipid transport DA442_03320 PF03658 RnfH family Ubiquitin DA442_03325 PF04355 SmpA / OmlA family DA442_03330 PF02463 RecF/RecN/SMC N terminal domain DA442_03335 PF11301 DA442_03335 DA442_03340 PF01513 ATP-NAD kinase DA442_03345 PF01025 GrpE DA442_03350 PF00375 Sodium:dicarboxylate symporter family DA442_03355 PF00012 Hsp70 protein DA442_03360 PF00226 DnaJ domain DA442_03360 PF00684 DnaJ central domain DA442_03360 PF01556 DnaJ C terminal domain DA442_03370 PF07963 Prokaryotic N-terminal methylation motif DA442_03370 PF16732 DA442_03370 DA442_03375 PF07963 Prokaryotic N-terminal methylation motif DA442_03375 PF12019 Type II transport protein GspH DA442_03390 PF07963 Prokaryotic N-terminal methylation motif DA442_03400 PF03806 DA442_03400 DA442_03405 PF14437 DA442_03405 DA442_03415 PF00497 Bacterial extracellular solute-binding proteins, family 3 DA442_03415 PF01464 Transglycosylase SLT domain DA442_03420 PF02769 AIR synthase related protein, C-terminal domain DA442_03420 PF13507 CobB/CobQ-like glutamine amidotransferase domain DA442_03425 PF12286 DA442_03425 DA442_03435 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family DA442_03445 PF01546 Peptidase family M20/M25/M40 DA442_03445 PF07687 Peptidase dimerisation domain DA442_03450 PF00860 Permease family DA442_03455 PF00156 Phosphoribosyl transferase domain DA442_03460 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) DA442_03465 PF07417 Transcriptional regulator Crl DA442_03470 PF00696 Amino acid kinase family DA442_03470 PF01472 PUA domain DA442_03475 PF00171 Aldehyde dehydrogenase family DA442_03480 PF03477 ATP cone domain DA442_03485 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DA442_03485 PF01872 RibD C-terminal domain DA442_03490 PF00677 Lumazine binding domain DA442_03495 PF00925 GTP cyclohydrolase II DA442_03495 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DA442_03500 PF00885 6,7-dimethyl-8-ribityllumazine synthase DA442_03505 PF01029 NusB family DA442_03510 PF00586 AIR synthase related protein, N-terminal domain DA442_03510 PF02769 AIR synthase related protein, C-terminal domain DA442_03515 PF04608 Phosphatidylglycerophosphatase A DA442_03520 PF02779 Transketolase, pyrimidine binding domain DA442_03520 PF02780 Transketolase, C-terminal domain DA442_03520 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DA442_03525 PF00348 Polyprenyl synthetase DA442_03530 PF02609 Exonuclease VII small subunit DA442_03535 PF01618 DA442_03535 DA442_03540 PF00691 OmpA family DA442_03540 PF13677 DA442_03540 DA442_03545 PF02568 Thiamine biosynthesis protein (ThiI) DA442_03545 PF02926 THUMP domain DA442_03550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_03550 PF03466 LysR substrate binding domain DA442_03555 PF12697 Alpha/beta hydrolase family DA442_03560 PF04241 DA442_03560 DA442_03565 PF01728 FtsJ-like methyltransferase DA442_03575 PF01367 5'-3' exonuclease, C-terminal SAM fold DA442_03575 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DA442_03580 PF03641 Possible lysine decarboxylase DA442_03580 PF11892 Domain of unknown function (DUF3412) DA442_03580 PF14793 Domain of unknown function (DUF4478) DA442_03585 PF00990 GGDEF domain DA442_03595 PF14489 QueF-like protein DA442_03595 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term DA442_03600 PF07348 Syd protein (SUKH-2) DA442_03605 PF10071 DA442_03605 DA442_03610 PF03180 NLPA lipoprotein DA442_03615 PF00528 Binding-protein-dependent transport system inner membrane component DA442_03620 PF00005 ABC transporter DA442_03620 PF09383 NIL domain DA442_03630 PF13242 HAD-hyrolase-like DA442_03635 PF00356 Bacterial regulatory proteins, lacI family DA442_03635 PF13377 Periplasmic binding protein-like domain DA442_03640 PF00367 phosphotransferase system, EIIB DA442_03640 PF02378 Phosphotransferase system, EIIC DA442_03645 PF00128 Alpha amylase, catalytic domain DA442_03645 PF16657 DA442_03645 DA442_03655 PF00486 Transcriptional regulatory protein, C terminal DA442_03660 PF02588 DA442_03660 DA442_03665 PF00464 Serine hydroxymethyltransferase DA442_03670 PF04055 Radical SAM superfamily DA442_03670 PF16881 DA442_03670 DA442_03675 PF03099 Biotin/lipoate A/B protein ligase family DA442_03680 PF04359 Protein of unknown function (DUF493) DA442_03685 PF00768 D-alanyl-D-alanine carboxypeptidase DA442_03685 PF07943 Penicillin-binding protein 5, C-terminal domain DA442_03690 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel DA442_03690 PF05036 Sporulation related domain DA442_03695 PF01098 DA442_03695 DA442_03700 PF00905 Penicillin binding protein transpeptidase domain DA442_03700 PF03717 Penicillin-binding Protein dimerisation domain DA442_03705 PF02590 Predicted SPOUT methyltransferase DA442_03710 PF02410 Oligomerisation domain DA442_03715 PF06144 DNA polymerase III, delta subunit DA442_03715 PF14840 Processivity clamp loader gamma complex DNA pol III C-term DA442_03720 PF04390 Lipopolysaccharide-assembly DA442_03725 PF00133 tRNA synthetases class I (I, L, M and V) DA442_03725 PF08264 Anticodon-binding domain of tRNA DA442_03725 PF13603 Leucyl-tRNA synthetase, Domain 2 DA442_03730 PF07295 DA442_03730 DA442_03735 PF00795 Carbon-nitrogen hydrolase DA442_03740 PF00571 CBS domain DA442_03740 PF03471 Transporter associated domain DA442_03745 PF02130 Uncharacterized protein family UPF0054 DA442_03750 PF02562 PhoH-like protein DA442_03755 PF00919 Uncharacterized protein family UPF0004 DA442_03755 PF01938 TRAM domain DA442_03755 PF04055 Radical SAM superfamily DA442_03765 PF01494 FAD binding domain DA442_03880 PF01926 50S ribosome-binding GTPase DA442_03880 PF06071 Protein of unknown function (DUF933) DA442_03885 PF01195 Peptidyl-tRNA hydrolase DA442_03890 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DA442_03890 PF14572 Phosphoribosyl synthetase-associated domain DA442_03895 PF00288 GHMP kinases N terminal domain DA442_03895 PF08544 GHMP kinases C terminal DA442_03900 PF03550 Outer membrane lipoprotein LolB DA442_03905 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain DA442_03905 PF01488 Shikimate / quinate 5-dehydrogenase DA442_03905 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain DA442_03910 PF00472 RF-1 domain DA442_03910 PF03462 PCRF domain DA442_03915 PF13847 Methyltransferase domain DA442_03920 PF04247 DA442_03920 DA442_03925 PF13369 DA442_03925 DA442_03925 PF13371 Tetratricopeptide repeat DA442_03930 PF00793 DAHP synthetase I family DA442_03935 PF00149 Calcineurin-like phosphoesterase DA442_03935 PF02872 5'-nucleotidase, C-terminal domain DA442_03940 PF04073 Aminoacyl-tRNA editing domain DA442_03945 PF00849 RNA pseudouridylate synthase DA442_03945 PF01479 S4 domain DA442_03950 PF01713 Smr domain DA442_03955 PF11346 DA442_03955 DA442_03965 PF01963 DA442_03965 DA442_03975 PF00728 Glycosyl hydrolase family 20, catalytic domain DA442_03975 PF02838 Glycosyl hydrolase family 20, domain 2 DA442_03975 PF03173 Putative carbohydrate binding domain DA442_03975 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain DA442_03980 PF06178 Oligogalacturonate-specific porin protein (KdgM) DA442_03985 PF04214 DA442_03985 DA442_03990 PF00122 E1-E2 ATPase DA442_03990 PF00403 Heavy-metal-associated domain DA442_03990 PF00702 haloacid dehalogenase-like hydrolase DA442_04000 PF13609 Gram-negative porin DA442_04005 PF09829 DA442_04005 DA442_04010 PF00749 tRNA synthetases class I (E and Q), catalytic domain DA442_04020 PF00691 OmpA family DA442_04020 PF01389 OmpA-like transmembrane domain DA442_04040 PF16538 DA442_04040 DA442_04040 PF16539 DA442_04040 DA442_04040 PF16548 DA442_04040 DA442_04050 PF02169 LPP20 lipoprotein DA442_04055 PF05130 FlgN protein DA442_04060 PF04316 Anti-sigma-28 factor, FlgM DA442_04065 PF13144 SAF-like DA442_04070 PF00072 Response regulator receiver domain DA442_04070 PF01584 CheW-like domain DA442_04075 PF01739 CheR methyltransferase, SAM binding domain DA442_04075 PF03705 CheR methyltransferase, all-alpha domain DA442_04085 PF00460 Flagella basal body rod protein DA442_04085 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DA442_04090 PF03963 DA442_04090 DA442_04090 PF13860 FlgD Ig-like domain DA442_04090 PF13861 FlgD Tudor-like domain DA442_04095 PF00460 Flagella basal body rod protein DA442_04095 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DA442_04095 PF07559 Flagellar basal body protein FlaE DA442_04105 PF00460 Flagella basal body rod protein DA442_04105 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DA442_04110 PF00460 Flagella basal body rod protein DA442_04110 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DA442_04115 PF02107 DA442_04115 DA442_04120 PF02119 DA442_04120 DA442_04125 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DA442_04125 PF10135 DA442_04125 DA442_04130 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DA442_04135 PF00669 Bacterial flagellin N-terminal helical region DA442_04145 PF00669 Bacterial flagellin N-terminal helical region DA442_04145 PF00700 Bacterial flagellin C-terminal helical region DA442_04145 PF07196 Flagellin hook IN motif DA442_04155 PF00669 Bacterial flagellin N-terminal helical region DA442_04155 PF00700 Bacterial flagellin C-terminal helical region DA442_04155 PF07196 Flagellin hook IN motif DA442_04160 PF00669 Bacterial flagellin N-terminal helical region DA442_04160 PF00700 Bacterial flagellin C-terminal helical region DA442_04160 PF07196 Flagellin hook IN motif DA442_04170 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DA442_04180 PF00381 PTS HPr component phosphorylation site DA442_04190 PF00291 Pyridoxal-phosphate dependent enzyme DA442_04195 PF07264 Etoposide-induced protein 2 DA442_04200 PF04354 ZipA, C-terminal FtsZ-binding domain DA442_04205 PF00533 BRCA1 C Terminus (BRCT) domain DA442_04205 PF01653 NAD-dependent DNA ligase adenylation domain DA442_04205 PF03119 NAD-dependent DNA ligase C4 zinc finger domain DA442_04205 PF03120 NAD-dependent DNA ligase OB-fold domain DA442_04205 PF12826 Helix-hairpin-helix motif DA442_04205 PF14520 Helix-hairpin-helix domain DA442_04230 PF01957 NfeD-like C-terminal, partner-binding DA442_04235 PF01145 SPFH domain / Band 7 family DA442_04235 PF16200 DA442_04235 DA442_04240 PF00085 Thioredoxin DA442_04240 PF14559 Tetratricopeptide repeat DA442_04240 PF14561 Tetratricopeptide repeat DA442_04250 PF00106 short chain dehydrogenase DA442_04255 PF01370 NAD dependent epimerase/dehydratase family DA442_04255 PF08338 Domain of unknown function (DUF1731) DA442_04260 PF07556 DA442_04260 DA442_04265 PF07556 DA442_04265 DA442_04275 PF00571 CBS domain DA442_04285 PF12850 Calcineurin-like phosphoesterase superfamily domain DA442_04290 PF10262 Rdx family DA442_04295 PF01925 DA442_04295 DA442_04300 PF17323 DA442_04300 DA442_04305 PF00486 Transcriptional regulatory protein, C terminal DA442_04310 PF00183 Hsp90 protein DA442_04310 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_04315 PF00406 Adenylate kinase DA442_04315 PF05191 Adenylate kinase, active site lid DA442_04320 PF00762 Ferrochelatase DA442_04325 PF00854 POT family DA442_04330 PF02357 Transcription termination factor nusG DA442_04335 PF00733 Asparagine synthase DA442_04335 PF13537 Glutamine amidotransferase domain DA442_04340 PF00999 Sodium/hydrogen exchanger family DA442_04340 PF02254 TrkA-N domain DA442_04345 PF00480 ROK family DA442_04350 PF01979 Amidohydrolase family DA442_04360 PF00367 phosphotransferase system, EIIB DA442_04360 PF02378 Phosphotransferase system, EIIC DA442_04365 PF00749 tRNA synthetases class I (E and Q), catalytic domain DA442_04365 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain DA442_04370 PF01475 Ferric uptake regulator family DA442_04375 PF14539 Domain of unknown function (DUF4442) DA442_04380 PF00258 Flavodoxin DA442_04385 PF10981 DA442_04385 DA442_04390 PF12697 Alpha/beta hydrolase family DA442_04400 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DA442_04400 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DA442_04400 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DA442_04400 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DA442_04405 PF08907 DA442_04405 DA442_04410 PF01784 NIF3 (NGG1p interacting factor 3) DA442_04415 PF00285 Citrate synthase DA442_04420 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DA442_04425 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DA442_04430 PF00890 FAD binding domain DA442_04430 PF02910 Fumarate reductase flavoprotein C-term DA442_04435 PF13085 2Fe-2S iron-sulfur cluster binding domain DA442_04435 PF13534 4Fe-4S dicluster domain DA442_04440 PF00676 Dehydrogenase E1 component DA442_04440 PF02779 Transketolase, pyrimidine binding domain DA442_04440 PF16078 DA442_04440 DA442_04440 PF16870 DA442_04440 DA442_04445 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DA442_04445 PF00364 Biotin-requiring enzyme DA442_04445 PF02817 e3 binding domain DA442_04450 PF00549 CoA-ligase DA442_04450 PF08442 ATP-grasp domain DA442_04455 PF00549 CoA-ligase DA442_04455 PF02629 CoA binding domain DA442_04460 PF00950 DA442_04460 DA442_04465 PF00005 ABC transporter DA442_04470 PF01297 Periplasmic solute binding protein family DA442_04485 PF04023 FeoA domain DA442_04490 PF02421 Ferrous iron transport protein B DA442_04490 PF07664 DA442_04490 DA442_04490 PF07670 Nucleoside recognition DA442_04495 PF09012 FeoC like transcriptional regulator DA442_04500 PF01230 HIT domain DA442_04505 PF00750 tRNA synthetases class I (R) DA442_04505 PF03485 Arginyl tRNA synthetase N terminal domain DA442_04505 PF05746 DALR anticodon binding domain DA442_04515 PF06185 YecM protein DA442_04520 PF00551 Formyl transferase DA442_04520 PF01842 ACT domain DA442_04525 PF04851 Type III restriction enzyme, res subunit DA442_04525 PF13307 Helicase C-terminal domain DA442_04530 PF00814 Glycoprotease family DA442_04540 PF03843 DA442_04540 DA442_04545 PF00561 alpha/beta hydrolase fold DA442_04550 PF00501 AMP-binding enzyme DA442_04550 PF13193 AMP-binding enzyme C-terminal domain DA442_04555 PF00570 HRDC domain DA442_04555 PF01612 3'-5' exonuclease DA442_04560 PF03776 Septum formation topological specificity factor MinE DA442_04565 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DA442_04570 PF03775 Septum formation inhibitor MinC, C-terminal domain DA442_04570 PF05209 Septum formation inhibitor MinC, N-terminal domain DA442_04575 PF05166 YcgL domain DA442_04580 PF13406 Transglycosylase SLT domain DA442_04585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_04585 PF03466 LysR substrate binding domain DA442_04590 PF01773 Na+ dependent nucleoside transporter N-terminus DA442_04590 PF07662 Na+ dependent nucleoside transporter C-terminus DA442_04590 PF07670 Nucleoside recognition DA442_04595 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DA442_04595 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DA442_04605 PF13395 HNH endonuclease DA442_04605 PF13489 Methyltransferase domain DA442_04610 PF00109 Beta-ketoacyl synthase, N-terminal domain DA442_04610 PF02801 Beta-ketoacyl synthase, C-terminal domain DA442_04615 PF13561 Enoyl-(Acyl carrier protein) reductase DA442_04620 PF07977 FabA-like domain DA442_04625 PF00109 Beta-ketoacyl synthase, N-terminal domain DA442_04625 PF02801 Beta-ketoacyl synthase, C-terminal domain DA442_04630 PF11659 DA442_04630 DA442_04635 PF03176 MMPL family DA442_04640 PF03548 Outer membrane lipoprotein carrier protein LolA DA442_04645 PF13279 Thioesterase-like superfamily DA442_04650 PF00221 Aromatic amino acid lyase DA442_04655 PF00535 Glycosyl transferase family 2 DA442_04655 PF03279 DA442_04655 DA442_04665 PF00501 AMP-binding enzyme DA442_04665 PF13193 AMP-binding enzyme C-terminal domain DA442_04675 PF00550 Phosphopantetheine attachment site DA442_04680 PF00550 Phosphopantetheine attachment site DA442_04685 PF01553 Acyltransferase DA442_04690 PF13723 DA442_04690 DA442_04700 PF00891 O-methyltransferase DA442_04705 PF01494 FAD binding domain DA442_04715 PF01595 DA442_04715 DA442_04715 PF03471 Transporter associated domain DA442_04720 PF00270 DEAD/DEAH box helicase DA442_04720 PF00271 Helicase conserved C-terminal domain DA442_04725 PF02080 TrkA-C domain DA442_04725 PF02254 TrkA-N domain DA442_04730 PF02386 Cation transport protein DA442_04750 PF02696 DA442_04750 DA442_04755 PF03480 Bacterial extracellular solute-binding protein, family 7 DA442_04760 PF04290 DA442_04760 DA442_04765 PF06808 DA442_04765 DA442_04780 PF00512 His Kinase A (phospho-acceptor) domain DA442_04780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_04780 PF02743 Cache domain DA442_04785 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DA442_04785 PF05697 Bacterial trigger factor protein (TF) DA442_04785 PF05698 Bacterial trigger factor protein (TF) C-terminus DA442_04790 PF00574 Clp protease DA442_04795 PF06689 ClpX C4-type zinc finger DA442_04795 PF07724 AAA domain (Cdc48 subfamily) DA442_04795 PF10431 C-terminal, D2-small domain, of ClpB protein DA442_04800 PF00004 ATPase family associated with various cellular activities (AAA) DA442_04800 PF02190 ATP-dependent protease La (LON) domain DA442_04800 PF05362 Lon protease (S16) C-terminal proteolytic domain DA442_04805 PF00216 Bacterial DNA-binding protein DA442_04810 PF13616 PPIC-type PPIASE domain DA442_04810 PF13624 SurA N-terminal domain DA442_04815 PF12836 Helix-hairpin-helix motif DA442_04820 PF01694 Rhomboid family DA442_04825 PF03942 DA442_04825 DA442_04830 PF01966 HD domain DA442_04830 PF13286 Phosphohydrolase-associated domain DA442_04835 PF13023 HD domain DA442_04840 PF00155 Aminotransferase class I and II DA442_04845 PF00425 chorismate binding enzyme DA442_04850 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DA442_04850 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DA442_04850 PF16582 DA442_04850 DA442_04855 PF12697 Alpha/beta hydrolase family DA442_04860 PF00378 Enoyl-CoA hydratase/isomerase family DA442_04865 PF13378 Enolase C-terminal domain-like DA442_04870 PF00501 AMP-binding enzyme DA442_04880 PF03601 DA442_04880 DA442_04885 PF01553 Acyltransferase DA442_04885 PF05977 Transmembrane secretion effector DA442_04890 PF13305 WHG domain DA442_04895 PF04280 Tim44-like domain DA442_04895 PF07466 DA442_04895 DA442_04930 PF16576 DA442_04930 DA442_04935 PF00873 AcrB/AcrD/AcrF family DA442_04950 PF13505 Outer membrane protein beta-barrel domain DA442_04955 PF06844 Protein of unknown function (DUF1244) DA442_04960 PF00291 Pyridoxal-phosphate dependent enzyme DA442_04965 PF01037 AsnC family DA442_04965 PF13412 Winged helix-turn-helix DNA-binding DA442_04975 PF13622 Thioesterase-like superfamily DA442_04980 PF09619 Type III secretion system lipoprotein chaperone (YscW) DA442_04985 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DA442_04995 PF00497 Bacterial extracellular solute-binding proteins, family 3 DA442_04995 PF00990 GGDEF domain DA442_05005 PF00588 SpoU rRNA Methylase family DA442_05010 PF11953 Domain of unknown function (DUF3470) DA442_05010 PF13187 4Fe-4S dicluster domain DA442_05025 PF00571 CBS domain DA442_05030 PF00122 E1-E2 ATPase DA442_05030 PF00403 Heavy-metal-associated domain DA442_05030 PF00702 haloacid dehalogenase-like hydrolase DA442_05035 PF01048 Phosphorylase superfamily DA442_05045 PF09002 Domain of unknown function (DUF1887) DA442_05050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_05055 PF01230 HIT domain DA442_05065 PF07233 Protein of unknown function (DUF1425) DA442_05070 PF13036 Protein of unknown function (DUF3897) DA442_05075 PF01633 Choline/ethanolamine kinase DA442_05080 PF05728 Uncharacterised protein family (UPF0227) DA442_05090 PF07992 Pyridine nucleotide-disulphide oxidoreductase DA442_05095 PF13302 Acetyltransferase (GNAT) domain DA442_05100 PF10972 DA442_05100 DA442_05105 PF00270 DEAD/DEAH box helicase DA442_05105 PF00271 Helicase conserved C-terminal domain DA442_05105 PF02559 CarD-like/TRCF domain DA442_05105 PF03461 TRCF domain DA442_05115 PF02687 DA442_05115 DA442_05115 PF12704 MacB-like periplasmic core domain DA442_05120 PF00005 ABC transporter DA442_05125 PF02687 DA442_05125 DA442_05125 PF12704 MacB-like periplasmic core domain DA442_05130 PF09835 DA442_05130 DA442_05135 PF00753 Metallo-beta-lactamase superfamily DA442_05135 PF03772 DA442_05135 DA442_05140 PF00005 ABC transporter DA442_05140 PF00664 ABC transporter transmembrane region DA442_05145 PF02606 Tetraacyldisaccharide-1-P 4'-kinase DA442_05150 PF03966 Trm112p-like protein DA442_05155 PF02348 Cytidylyltransferase DA442_05160 PF04293 DA442_05160 DA442_05165 PF04285 DA442_05165 DA442_05170 PF06798 DA442_05170 DA442_05170 PF08298 PrkA AAA domain DA442_05180 PF03887 YfbU domain DA442_05185 PF01891 Cobalt uptake substrate-specific transmembrane region DA442_05190 PF04055 Radical SAM superfamily DA442_05190 PF13353 4Fe-4S single cluster domain DA442_05195 PF09982 Uncharacterized protein conserved in bacteria (DUF2219) DA442_05200 PF01228 Glycine radical DA442_05200 PF02901 Pyruvate formate lyase DA442_05220 PF00005 ABC transporter DA442_05225 PF00497 Bacterial extracellular solute-binding proteins, family 3 DA442_05230 PF00528 Binding-protein-dependent transport system inner membrane component DA442_05235 PF00528 Binding-protein-dependent transport system inner membrane component DA442_05240 PF17291 DA442_05240 DA442_05245 PF03372 Endonuclease/Exonuclease/phosphatase family DA442_05250 PF10689 DA442_05250 DA442_05255 PF07445 Primosomal replication protein priB and priC DA442_05260 PF01925 DA442_05260 DA442_05265 PF04851 Type III restriction enzyme, res subunit DA442_05265 PF13307 Helicase C-terminal domain DA442_05270 PF13609 Gram-negative porin DA442_05275 PF09829 DA442_05275 DA442_05280 PF00849 RNA pseudouridylate synthase DA442_05285 PF03971 Monomeric isocitrate dehydrogenase DA442_05290 PF00313 'Cold-shock' DNA-binding domain DA442_05295 PF02617 ATP-dependent Clp protease adaptor protein ClpS DA442_05310 PF01176 Translation initiation factor 1A / IF-1 DA442_05315 PF04376 DA442_05315 DA442_05315 PF04377 DA442_05315 DA442_05320 PF03588 Leucyl/phenylalanyl-tRNA protein transferase DA442_05325 PF05433 DA442_05325 DA442_05335 PF10692 Protein of unknown function (DUF2498) DA442_05340 PF01131 DNA topoisomerase DA442_05340 PF01396 DA442_05340 DA442_05340 PF01751 Toprim domain DA442_05340 PF08272 Topoisomerase I zinc-ribbon-like DA442_05345 PF00483 Nucleotidyl transferase DA442_05350 PF00534 Glycosyl transferases group 1 DA442_05350 PF08323 Starch synthase catalytic domain DA442_05355 PF00561 alpha/beta hydrolase fold DA442_05360 PF09413 Domain of unknown function (DUF2007) DA442_05370 PF04993 TfoX N-terminal domain DA442_05370 PF04994 TfoX C-terminal domain DA442_05375 PF00356 Bacterial regulatory proteins, lacI family DA442_05375 PF13377 Periplasmic binding protein-like domain DA442_05380 PF02613 Nitrate reductase delta subunit DA442_05385 PF00072 Response regulator receiver domain DA442_05385 PF00486 Transcriptional regulatory protein, C terminal DA442_05390 PF02698 DUF218 domain DA442_05395 PF08241 Methyltransferase domain DA442_05400 PF03882 KicB killing factor DA442_05400 PF17192 DA442_05400 DA442_05400 PF17193 DA442_05400 DA442_05405 PF04288 MukE-like family DA442_05410 PF04310 MukB N-terminal DA442_05410 PF13558 Putative exonuclease SbcCD, C subunit DA442_05410 PF16330 DA442_05410 DA442_05420 PF14397 DA442_05420 DA442_05425 PF14400 DA442_05425 DA442_05425 PF14402 DA442_05425 DA442_05430 PF05618 Putative ATP-dependant zinc protease DA442_05440 PF08003 Protein of unknown function (DUF1698) DA442_05445 PF13649 Methyltransferase domain DA442_05450 PF01904 Protein of unknown function DUF72 DA442_05455 PF00152 tRNA synthetases class II (D, K and N) DA442_05455 PF01336 OB-fold nucleic acid binding domain DA442_05455 PF02938 GAD domain DA442_05460 PF02075 Crossover junction endodeoxyribonuclease RuvC DA442_05465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_05470 PF01330 RuvA N terminal domain DA442_05470 PF07499 RuvA, C-terminal domain DA442_05470 PF14520 Helix-hairpin-helix domain DA442_05475 PF05491 Holliday junction DNA helicase ruvB C-terminus DA442_05475 PF05496 Holliday junction DNA helicase ruvB N-terminus DA442_05480 PF01654 DA442_05480 DA442_05485 PF02322 DA442_05485 DA442_05490 PF08173 DA442_05490 DA442_05495 PF09600 DA442_05495 DA442_05500 PF03061 Thioesterase superfamily DA442_05505 PF01618 DA442_05505 DA442_05510 PF02472 Biopolymer transport protein ExbD/TolR DA442_05525 PF00691 OmpA family DA442_05530 PF13174 Tetratricopeptide repeat DA442_05530 PF13432 Tetratricopeptide repeat DA442_05530 PF16331 DA442_05530 DA442_05535 PF02445 Quinolinate synthetase A protein DA442_05540 PF07885 Ion channel DA442_05545 PF03994 DA442_05545 DA442_05550 PF06693 DA442_05550 DA442_05560 PF03695 Uncharacterised protein family (UPF0149) DA442_05570 PF06610 DA442_05570 DA442_05580 PF00589 Phage integrase family DA442_05590 PF00239 Resolvase, N terminal domain DA442_05590 PF02796 Helix-turn-helix domain of resolvase DA442_05600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_05600 PF00672 HAMP domain DA442_05615 PF16576 DA442_05615 DA442_05625 PF01047 MarR family DA442_05630 PF03547 DA442_05630 DA442_05640 PF00579 tRNA synthetases class I (W and Y) DA442_05650 PF03372 Endonuclease/Exonuclease/phosphatase family DA442_05655 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) DA442_05665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_05665 PF03466 LysR substrate binding domain DA442_05670 PF13679 DA442_05670 DA442_05680 PF01037 AsnC family DA442_05680 PF13412 Winged helix-turn-helix DNA-binding DA442_05690 PF03548 Outer membrane lipoprotein carrier protein LolA DA442_05700 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DA442_05700 PF02403 Seryl-tRNA synthetase N-terminal domain DA442_05715 PF01258 Prokaryotic dksA/traR C4-type zinc finger DA442_05720 PF00202 Aminotransferase class-III DA442_05725 PF04055 Radical SAM superfamily DA442_05725 PF06968 Biotin and Thiamin Synthesis associated domain DA442_05730 PF00155 Aminotransferase class I and II DA442_05735 PF08241 Methyltransferase domain DA442_05740 PF13500 AAA domain DA442_05750 PF01435 Peptidase family M48 DA442_05755 PF12680 SnoaL-like domain DA442_05760 PF00106 short chain dehydrogenase DA442_05765 PF01593 Flavin containing amine oxidoreductase DA442_05770 PF07103 DA442_05770 DA442_05775 PF02353 Mycolic acid cyclopropane synthetase DA442_05780 PF11086 DA442_05780 DA442_05785 PF16036 DA442_05785 DA442_05790 PF12915 DA442_05790 DA442_05800 PF00206 Lyase DA442_05800 PF08328 Adenylosuccinate lyase C-terminal DA442_05805 PF04356 Protein of unknown function (DUF489) DA442_05810 PF03054 tRNA methyl transferase DA442_05820 PF00294 pfkB family carbohydrate kinase DA442_05825 PF00816 H-NS histone family DA442_05830 PF03553 DA442_05830 DA442_05840 PF00158 Sigma-54 interaction domain DA442_05840 PF02954 Bacterial regulatory protein, Fis family DA442_05845 PF01634 ATP phosphoribosyltransferase DA442_05845 PF08029 HisG, C-terminal domain DA442_05850 PF00815 Histidinol dehydrogenase DA442_05855 PF00155 Aminotransferase class I and II DA442_05860 PF00475 Imidazoleglycerol-phosphate dehydratase DA442_05860 PF08645 Polynucleotide kinase 3 phosphatase DA442_05865 PF00117 Glutamine amidotransferase class-I DA442_05870 PF00977 Histidine biosynthesis protein DA442_05875 PF00977 Histidine biosynthesis protein DA442_05880 PF01502 Phosphoribosyl-AMP cyclohydrolase DA442_05880 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase DA442_05885 PF02810 SEC-C motif DA442_05895 PF00563 EAL domain DA442_05895 PF08668 HDOD domain DA442_05900 PF12850 Calcineurin-like phosphoesterase superfamily domain DA442_05905 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DA442_05910 PF01406 tRNA synthetases class I (C) catalytic domain DA442_05910 PF09190 DALR domain DA442_05915 PF00265 Thymidine kinase DA442_05920 PF02698 DUF218 domain DA442_05925 PF13460 NADH(P)-binding DA442_05930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_05930 PF03466 LysR substrate binding domain DA442_05935 PF05232 DA442_05935 DA442_05940 PF06146 DA442_05940 DA442_05945 PF01226 Formate/nitrite transporter DA442_05955 PF03649 DA442_05955 DA442_05960 PF06796 DA442_05960 DA442_05965 PF03264 NapC/NirT cytochrome c family, N-terminal region DA442_05970 PF00384 Molybdopterin oxidoreductase DA442_05970 PF01568 Molydopterin dinucleotide binding domain DA442_05975 PF02065 Melibiase DA442_05990 PF11042 DA442_05990 DA442_05995 PF00005 ABC transporter DA442_06000 PF00005 ABC transporter DA442_06000 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DA442_06005 PF00528 Binding-protein-dependent transport system inner membrane component DA442_06005 PF12911 DA442_06005 DA442_06010 PF00528 Binding-protein-dependent transport system inner membrane component DA442_06015 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DA442_06020 PF00158 Sigma-54 interaction domain DA442_06020 PF02954 Bacterial regulatory protein, Fis family DA442_06025 PF04012 DA442_06025 DA442_06030 PF06667 DA442_06030 DA442_06035 PF04024 DA442_06035 DA442_06055 PF03352 Methyladenine glycosylase DA442_06060 PF03280 Proteobacterial lipase chaperone protein DA442_06065 PF00561 alpha/beta hydrolase fold DA442_06070 PF01053 Cys/Met metabolism PLP-dependent enzyme DA442_06075 PF13091 PLD-like domain DA442_06075 PF13396 DA442_06075 DA442_06080 PF00209 Sodium:neurotransmitter symporter family DA442_06085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_06085 PF00672 HAMP domain DA442_06090 PF00849 RNA pseudouridylate synthase DA442_06095 PF10672 S-adenosylmethionine-dependent methyltransferase DA442_06100 PF00111 2Fe-2S iron-sulfur cluster binding domain DA442_06100 PF00175 Oxidoreductase NAD-binding domain DA442_06100 PF00970 Oxidoreductase FAD-binding domain DA442_06105 PF03063 Prismane/CO dehydrogenase family DA442_06110 PF00158 Sigma-54 interaction domain DA442_06110 PF02954 Bacterial regulatory protein, Fis family DA442_06120 PF05433 DA442_06120 DA442_06125 PF01066 CDP-alcohol phosphatidyltransferase DA442_06130 PF00005 ABC transporter DA442_06140 PF13416 Bacterial extracellular solute-binding protein DA442_06145 PF09335 DA442_06145 DA442_06150 PF02754 DA442_06150 DA442_06155 PF07992 Pyridine nucleotide-disulphide oxidoreductase DA442_06155 PF13534 4Fe-4S dicluster domain DA442_06155 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DA442_06160 PF00581 Rhodanese-like domain DA442_06165 PF00512 His Kinase A (phospho-acceptor) domain DA442_06165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_06165 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein DA442_06170 PF00072 Response regulator receiver domain DA442_06170 PF00196 Bacterial regulatory proteins, luxR family DA442_06175 PF03724 META domain DA442_06180 PF06945 DA442_06180 DA442_06195 PF00149 Calcineurin-like phosphoesterase DA442_06195 PF02872 5'-nucleotidase, C-terminal domain DA442_06205 PF00583 Acetyltransferase (GNAT) family DA442_06210 PF01386 Ribosomal L25p family DA442_06215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_06220 PF00072 Response regulator receiver domain DA442_06220 PF00486 Transcriptional regulatory protein, C terminal DA442_06230 PF00271 Helicase conserved C-terminal domain DA442_06230 PF04851 Type III restriction enzyme, res subunit DA442_06235 PF00849 RNA pseudouridylate synthase DA442_06235 PF01479 S4 domain DA442_06240 PF07690 Major Facilitator Superfamily DA442_06245 PF11140 DA442_06245 DA442_06250 PF11854 DA442_06250 DA442_06255 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) DA442_06260 PF14522 Cytochrome c7 DA442_06265 PF13442 Cytochrome C oxidase, cbb3-type, subunit III DA442_06270 PF03264 NapC/NirT cytochrome c family, N-terminal region DA442_06275 PF11066 DA442_06275 DA442_06275 PF13460 NADH(P)-binding DA442_06280 PF01554 MatE DA442_06285 PF00005 ABC transporter DA442_06290 PF02687 DA442_06290 DA442_06290 PF12704 MacB-like periplasmic core domain DA442_06295 PF07143 Hydroxyneurosporene synthase (CrtC) DA442_06295 PF17186 DA442_06295 DA442_06300 PF06965 Na+/H+ antiporter 1 DA442_06305 PF00440 Bacterial regulatory proteins, tetR family DA442_06315 PF07055 Enoyl reductase FAD binding domain DA442_06315 PF12241 Trans-2-enoyl-CoA reductase catalytic region DA442_06315 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase DA442_06320 PF02080 TrkA-C domain DA442_06320 PF06826 DA442_06320 DA442_06325 PF00462 Glutaredoxin DA442_06335 PF00465 Iron-containing alcohol dehydrogenase DA442_06345 PF00282 Pyridoxal-dependent decarboxylase conserved domain DA442_06355 PF03956 DA442_06355 DA442_06360 PF08668 HDOD domain DA442_06375 PF04993 TfoX N-terminal domain DA442_06375 PF04994 TfoX C-terminal domain DA442_06385 PF00072 Response regulator receiver domain DA442_06390 PF00027 Cyclic nucleotide-binding domain DA442_06390 PF00512 His Kinase A (phospho-acceptor) domain DA442_06390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_06395 PF06097 DA442_06395 DA442_06400 PF00266 Aminotransferase class-V DA442_06405 PF00291 Pyridoxal-phosphate dependent enzyme DA442_06420 PF07992 Pyridine nucleotide-disulphide oxidoreductase DA442_06425 PF10014 2OG-Fe dioxygenase DA442_06430 PF00266 Aminotransferase class-V DA442_06440 PF00990 GGDEF domain DA442_06445 PF00939 Sodium:sulfate symporter transmembrane region DA442_06450 PF02698 DUF218 domain DA442_06455 PF00390 Malic enzyme, N-terminal domain DA442_06455 PF03949 Malic enzyme, NAD binding domain DA442_06460 PF00270 DEAD/DEAH box helicase DA442_06460 PF00271 Helicase conserved C-terminal domain DA442_06460 PF04408 Helicase associated domain (HA2) DA442_06465 PF02253 Phospholipase A1 DA442_06475 PF09423 PhoD-like phosphatase DA442_06475 PF16655 DA442_06475 DA442_06480 PF01259 SAICAR synthetase DA442_06485 PF03846 Cell division inhibitor SulA DA442_06500 PF00691 OmpA family DA442_06500 PF13488 DA442_06500 DA442_06505 PF10979 DA442_06505 DA442_06510 PF11813 DA442_06510 DA442_06515 PF01565 FAD binding domain DA442_06515 PF02913 FAD linked oxidases, C-terminal domain DA442_06515 PF13183 4Fe-4S dicluster domain DA442_06520 PF04191 Phospholipid methyltransferase DA442_06525 PF12119 DA442_06525 DA442_06530 PF00221 Aromatic amino acid lyase DA442_06535 PF01175 Urocanase DA442_06535 PF17391 DA442_06535 DA442_06535 PF17392 DA442_06535 DA442_06545 PF01979 Amidohydrolase family DA442_06550 PF00392 Bacterial regulatory proteins, gntR family DA442_06550 PF07702 UTRA domain DA442_06555 PF07070 DA442_06555 DA442_06560 PF11383 DA442_06560 DA442_06565 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DA442_06565 PF02824 TGS domain DA442_06565 PF03129 Anticodon binding domain DA442_06565 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DA442_06570 PF00707 Translation initiation factor IF-3, C-terminal domain DA442_06570 PF05198 Translation initiation factor IF-3, N-terminal domain DA442_06575 PF01632 Ribosomal protein L35 DA442_06580 PF00453 Ribosomal protein L20 DA442_06585 PF01906 Putative heavy-metal-binding DA442_06590 PF13443 Cro/C1-type HTH DNA-binding domain DA442_06595 PF00440 Bacterial regulatory proteins, tetR family DA442_06600 PF03176 MMPL family DA442_06605 PF17131 DA442_06605 DA442_06615 PF00990 GGDEF domain DA442_06615 PF01814 Hemerythrin HHE cation binding domain DA442_06625 PF01588 Putative tRNA binding domain DA442_06625 PF03147 Ferredoxin-fold anticodon binding domain DA442_06625 PF03483 B3/4 domain DA442_06625 PF03484 tRNA synthetase B5 domain DA442_06635 PF03547 DA442_06635 DA442_06640 PF00216 Bacterial DNA-binding protein DA442_06650 PF05724 Thiopurine S-methyltransferase (TPMT) DA442_06655 PF02222 ATP-grasp domain DA442_06660 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DA442_06660 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region DA442_06665 PF04172 DA442_06665 DA442_06670 PF03788 DA442_06670 DA442_06675 PF00929 Exonuclease DA442_06675 PF08411 Exonuclease C-terminal DA442_06680 PF00375 Sodium:dicarboxylate symporter family DA442_06685 PF13460 NADH(P)-binding DA442_06690 PF02277 Phosphoribosyltransferase DA442_06695 PF02654 DA442_06695 DA442_06700 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase DA442_06705 PF00300 Histidine phosphatase superfamily (branch 1) DA442_06710 PF01432 Peptidase family M3 DA442_06710 PF08439 Oligopeptidase F DA442_06720 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family DA442_06725 PF01032 FecCD transport family DA442_06730 PF00005 ABC transporter DA442_06740 PF07209 DA442_06740 DA442_06745 PF07690 Major Facilitator Superfamily DA442_06750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_06750 PF03466 LysR substrate binding domain DA442_06755 PF00462 Glutaredoxin DA442_06770 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DA442_06775 PF01370 NAD dependent epimerase/dehydratase family DA442_06780 PF04991 DA442_06780 DA442_06785 PF01863 Protein of unknown function DUF45 DA442_06790 PF05971 Protein of unknown function (DUF890) DA442_06800 PF03572 Peptidase family S41 DA442_06810 PF00392 Bacterial regulatory proteins, gntR family DA442_06810 PF07729 FCD domain DA442_06815 PF00171 Aldehyde dehydrogenase family DA442_06820 PF05544 Proline racemase DA442_06825 PF01266 FAD dependent oxidoreductase DA442_06830 PF13416 Bacterial extracellular solute-binding protein DA442_06840 PF02423 Ornithine cyclodeaminase/mu-crystallin family DA442_06845 PF00701 Dihydrodipicolinate synthetase family DA442_06850 PF00005 ABC transporter DA442_06850 PF08402 TOBE domain DA442_06855 PF00528 Binding-protein-dependent transport system inner membrane component DA442_06860 PF00528 Binding-protein-dependent transport system inner membrane component DA442_06875 PF00801 PKD domain DA442_06875 PF01752 Collagenase DA442_06875 PF08453 Peptidase family M9 N-terminal DA442_06885 PF00557 Metallopeptidase family M24 DA442_06885 PF01321 Creatinase/Prolidase N-terminal domain DA442_06885 PF16188 DA442_06885 DA442_06885 PF16189 DA442_06885 DA442_06890 PF00005 ABC transporter DA442_06890 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DA442_06895 PF00005 ABC transporter DA442_06895 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DA442_06900 PF00528 Binding-protein-dependent transport system inner membrane component DA442_06900 PF12911 DA442_06900 DA442_06905 PF00528 Binding-protein-dependent transport system inner membrane component DA442_06910 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DA442_06915 PF01546 Peptidase family M20/M25/M40 DA442_06915 PF07687 Peptidase dimerisation domain DA442_06930 PF04209 homogentisate 1,2-dioxygenase DA442_06940 PF00043 Glutathione S-transferase, C-terminal domain DA442_06940 PF13417 Glutathione S-transferase, N-terminal domain DA442_06965 PF00589 Phage integrase family DA442_06975 PF05565 DA442_06975 DA442_06990 PF00717 Peptidase S24-like DA442_06990 PF01381 Helix-turn-helix DA442_07010 PF13730 DA442_07010 DA442_07020 PF07105 DA442_07020 DA442_07030 PF05766 DA442_07030 DA442_07035 PF06530 DA442_07035 DA442_07045 PF00313 'Cold-shock' DNA-binding domain DA442_07075 PF14412 DA442_07075 DA442_07080 PF07411 Domain of unknown function (DUF1508) DA442_07085 PF00182 Chitinase class I DA442_07085 PF01471 Putative peptidoglycan binding domain DA442_07095 PF04466 Phage terminase large subunit DA442_07210 PF02368 Bacterial Ig-like domain (group 2) DA442_07235 PF00486 Transcriptional regulatory protein, C terminal DA442_07240 PF13737 DA442_07240 DA442_07245 PF13505 Outer membrane protein beta-barrel domain DA442_07265 PF03692 DA442_07265 DA442_07270 PF13302 Acetyltransferase (GNAT) domain DA442_07280 PF11665 DA442_07280 DA442_07300 PF13265 DA442_07300 DA442_07305 PF01103 Surface antigen DA442_07315 PF02405 DA442_07315 DA442_07315 PF13466 STAS domain DA442_07320 PF00005 ABC transporter DA442_07325 PF02470 DA442_07325 DA442_07340 PF13505 Outer membrane protein beta-barrel domain DA442_07345 PF04632 DA442_07345 DA442_07355 PF07869 DA442_07355 DA442_07360 PF01545 Cation efflux family DA442_07365 PF13520 Amino acid permease DA442_07370 PF00497 Bacterial extracellular solute-binding proteins, family 3 DA442_07375 PF13520 Amino acid permease DA442_07385 PF01276 Orn/Lys/Arg decarboxylase, major domain DA442_07385 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain DA442_07385 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DA442_07390 PF08543 Phosphomethylpyrimidine kinase DA442_07405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_07405 PF03466 LysR substrate binding domain DA442_07410 PF01546 Peptidase family M20/M25/M40 DA442_07410 PF07687 Peptidase dimerisation domain DA442_07420 PF03992 Antibiotic biosynthesis monooxygenase DA442_07425 PF00300 Histidine phosphatase superfamily (branch 1) DA442_07435 PF13673 Acetyltransferase (GNAT) domain DA442_07450 PF00072 Response regulator receiver domain DA442_07460 PF01966 HD domain DA442_07460 PF11871 DA442_07460 DA442_07465 PF01810 DA442_07465 DA442_07470 PF11230 DA442_07470 DA442_07475 PF04055 Radical SAM superfamily DA442_07475 PF13353 4Fe-4S single cluster domain DA442_07480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_07480 PF03466 LysR substrate binding domain DA442_07485 PF03741 DA442_07485 DA442_07495 PF01551 Peptidase family M23 DA442_07515 PF00691 OmpA family DA442_07520 PF00158 Sigma-54 interaction domain DA442_07520 PF02954 Bacterial regulatory protein, Fis family DA442_07520 PF13185 GAF domain DA442_07525 PF00004 ATPase family associated with various cellular activities (AAA) DA442_07525 PF07724 AAA domain (Cdc48 subfamily) DA442_07525 PF10431 C-terminal, D2-small domain, of ClpB protein DA442_07530 PF05638 Protein of unknown function (DUF796) DA442_07550 PF09937 DA442_07550 DA442_07560 PF00069 Protein kinase domain DA442_07565 PF06812 DA442_07565 DA442_07565 PF16989 DA442_07565 DA442_07570 PF05591 DA442_07570 DA442_07575 PF05943 DA442_07575 DA442_07580 PF04965 Gene 25-like lysozyme DA442_07585 PF05947 DA442_07585 DA442_07590 PF06996 DA442_07590 DA442_07595 PF01037 AsnC family DA442_07595 PF13404 AsnC-type helix-turn-helix domain DA442_07600 PF06744 DA442_07600 DA442_07600 PF06761 DA442_07600 DA442_07600 PF14331 DA442_07600 DA442_07605 PF06812 DA442_07605 DA442_07615 PF00498 FHA domain DA442_07620 PF12790 Type VI secretion lipoprotein DA442_07625 PF05936 DA442_07625 DA442_07630 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) DA442_07635 PF13665 DA442_07635 DA442_07640 PF14412 DA442_07640 DA442_07675 PF13640 2OG-Fe(II) oxygenase superfamily DA442_07680 PF01966 HD domain DA442_07690 PF00465 Iron-containing alcohol dehydrogenase DA442_07695 PF03222 Tryptophan/tyrosine permease family DA442_07700 PF13487 HD domain DA442_07725 PF00005 ABC transporter DA442_07725 PF00664 ABC transporter transmembrane region DA442_07735 PF07963 Prokaryotic N-terminal methylation motif DA442_07740 PF03616 DA442_07740 DA442_07745 PF03352 Methyladenine glycosylase DA442_07755 PF00012 Hsp70 protein DA442_07755 PF12531 DA442_07755 DA442_07760 PF00012 Hsp70 protein DA442_07770 PF00990 GGDEF domain DA442_07770 PF03924 CHASE domain DA442_07775 PF00929 Exonuclease DA442_07780 PF05099 Tellurite resistance protein TerB DA442_07800 PF00384 Molybdopterin oxidoreductase DA442_07800 PF01568 Molydopterin dinucleotide binding domain DA442_07800 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DA442_07805 PF12800 4Fe-4S binding domain DA442_07805 PF13247 4Fe-4S dicluster domain DA442_07810 PF04976 DA442_07810 DA442_07815 PF02613 Nitrate reductase delta subunit DA442_07820 PF12838 4Fe-4S dicluster domain DA442_07825 PF02525 Flavodoxin-like fold DA442_07830 PF00270 DEAD/DEAH box helicase DA442_07830 PF00271 Helicase conserved C-terminal domain DA442_07830 PF04408 Helicase associated domain (HA2) DA442_07830 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold DA442_07830 PF11898 DA442_07830 DA442_07835 PF13505 Outer membrane protein beta-barrel domain DA442_07845 PF02028 BCCT family transporter DA442_07850 PF13671 AAA domain DA442_07855 PF02397 DA442_07855 DA442_07860 PF13641 Glycosyltransferase like family 2 DA442_07865 PF00534 Glycosyl transferases group 1 DA442_07865 PF13439 Glycosyltransferase Family 4 DA442_07880 PF13692 Glycosyl transferases group 1 DA442_07885 PF04932 DA442_07885 DA442_07890 PF01943 DA442_07890 DA442_07895 PF00534 Glycosyl transferases group 1 DA442_07900 PF00534 Glycosyl transferases group 1 DA442_07900 PF13439 Glycosyltransferase Family 4 DA442_07905 PF00534 Glycosyl transferases group 1 DA442_07905 PF13439 Glycosyltransferase Family 4 DA442_07910 PF00072 Response regulator receiver domain DA442_07910 PF00158 Sigma-54 interaction domain DA442_07910 PF02954 Bacterial regulatory protein, Fis family DA442_07920 PF01627 Hpt domain DA442_07930 PF02563 Polysaccharide biosynthesis/export protein DA442_07930 PF10531 SLBB domain DA442_07935 PF00691 OmpA family DA442_07940 PF13466 STAS domain DA442_07945 PF01068 ATP dependent DNA ligase domain DA442_07945 PF14743 DNA ligase OB-like domain DA442_07950 PF11279 DA442_07950 DA442_07955 PF01554 MatE DA442_07960 PF00677 Lumazine binding domain DA442_07965 PF14255 DA442_07965 DA442_07970 PF03881 Fructosamine kinase DA442_07980 PF00990 GGDEF domain DA442_07985 PF12290 DA442_07985 DA442_07990 PF00877 NlpC/P60 family DA442_07995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_08000 PF00293 NUDIX domain DA442_08025 PF04116 DA442_08025 DA442_08035 PF00480 ROK family DA442_08040 PF11173 DA442_08040 DA442_08045 PF00994 Probable molybdopterin binding domain DA442_08045 PF03205 Molybdopterin guanine dinucleotide synthesis protein B DA442_08045 PF03453 MoeA N-terminal region (domain I and II) DA442_08045 PF03454 MoeA C-terminal region (domain IV) DA442_08050 PF12804 MobA-like NTP transferase domain DA442_08055 PF00005 ABC transporter DA442_08075 PF00512 His Kinase A (phospho-acceptor) domain DA442_08075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_08075 PF17202 DA442_08075 DA442_08085 PF00005 ABC transporter DA442_08085 PF12848 ABC transporter DA442_08090 PF02634 FdhD/NarQ family DA442_08105 PF11748 DA442_08105 DA442_08110 PF00037 4Fe-4S binding domain DA442_08110 PF12838 4Fe-4S dicluster domain DA442_08115 PF02613 Nitrate reductase delta subunit DA442_08130 PF13247 4Fe-4S dicluster domain DA442_08135 PF01292 Prokaryotic cytochrome b561 DA442_08145 PF03527 DA442_08145 DA442_08145 PF05593 DA442_08145 DA442_08150 PF15575 DA442_08150 DA442_08165 PF15575 DA442_08165 DA442_08170 PF00909 Ammonium Transporter Family DA442_08180 PF02146 Sir2 family DA442_08185 PF13416 Bacterial extracellular solute-binding protein DA442_08190 PF13416 Bacterial extracellular solute-binding protein DA442_08195 PF00528 Binding-protein-dependent transport system inner membrane component DA442_08200 PF00528 Binding-protein-dependent transport system inner membrane component DA442_08205 PF00005 ABC transporter DA442_08205 PF08402 TOBE domain DA442_08215 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DA442_08220 PF11205 DA442_08220 DA442_08225 PF01171 PP-loop family DA442_08235 PF00582 Universal stress protein family DA442_08240 PF00027 Cyclic nucleotide-binding domain DA442_08240 PF13545 Crp-like helix-turn-helix domain DA442_08245 PF13386 DA442_08245 DA442_08250 PF03597 DA442_08250 DA442_08260 PF05751 DA442_08260 DA442_08265 PF13442 Cytochrome C oxidase, cbb3-type, subunit III DA442_08265 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP DA442_08270 PF05545 DA442_08270 DA442_08275 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO DA442_08290 PF08495 DA442_08290 DA442_08290 PF10442 DA442_08290 DA442_08295 PF00072 Response regulator receiver domain DA442_08295 PF00512 His Kinase A (phospho-acceptor) domain DA442_08295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_08300 PF12472 DA442_08300 DA442_08315 PF06303 Organiser of macrodomain of Terminus of chromosome DA442_08315 PF17414 DA442_08315 DA442_08325 PF07977 FabA-like domain DA442_08330 PF04957 Ribosome modulation factor DA442_08335 PF11949 DA442_08335 DA442_08340 PF00005 ABC transporter DA442_08340 PF12848 ABC transporter DA442_08340 PF16326 DA442_08340 DA442_08345 PF05768 Glutaredoxin-like domain (DUF836) DA442_08350 PF01170 Putative RNA methylase family UPF0020 DA442_08350 PF02926 THUMP domain DA442_08350 PF10672 S-adenosylmethionine-dependent methyltransferase DA442_08360 PF07126 DA442_08360 DA442_08365 PF01180 Dihydroorotate dehydrogenase DA442_08370 PF05088 DA442_08370 DA442_08375 PF11197 DA442_08375 DA442_08380 PF01433 Peptidase family M1 DA442_08380 PF11940 Domain of unknown function (DUF3458) DA442_08380 PF17432 DA442_08380 DA442_08390 PF00595 PDZ domain (Also known as DHR or GLGF) DA442_08390 PF03572 Peptidase family S41 DA442_08390 PF08180 DA442_08390 DA442_08390 PF11818 DA442_08390 DA442_08395 PF04352 ProQ/FINO family DA442_08395 PF17516 DA442_08395 DA442_08400 PF13185 GAF domain DA442_08405 PF00005 ABC transporter DA442_08405 PF00664 ABC transporter transmembrane region DA442_08410 PF04403 DA442_08410 DA442_08415 PF02470 DA442_08415 DA442_08425 PF01189 NOL1/NOP2/sun family DA442_08425 PF13636 pre-rRNA processing and ribosome biogenesis DA442_08425 PF17125 DA442_08425 DA442_08430 PF13509 S1 domain DA442_08440 PF14539 Domain of unknown function (DUF4442) DA442_08445 PF00793 DAHP synthetase I family DA442_08450 PF04461 Protein of unknown function (DUF520) DA442_08460 PF10414 Sirohaem synthase dimerisation region DA442_08460 PF13241 Putative NAD(P)-binding DA442_08460 PF14824 Sirohaem biosynthesis protein central DA442_08470 PF00497 Bacterial extracellular solute-binding proteins, family 3 DA442_08475 PF00528 Binding-protein-dependent transport system inner membrane component DA442_08480 PF00528 Binding-protein-dependent transport system inner membrane component DA442_08485 PF00005 ABC transporter DA442_08490 PF01027 Inhibitor of apoptosis-promoting Bax1 DA442_08500 PF04358 DsrC like protein DA442_08505 PF00708 Acylphosphatase DA442_08510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_08515 PF10672 S-adenosylmethionine-dependent methyltransferase DA442_08520 PF03160 Calx-beta domain DA442_08525 PF02321 Outer membrane efflux protein DA442_08530 PF00691 OmpA family DA442_08555 PF02321 Outer membrane efflux protein DA442_08560 PF00691 OmpA family DA442_08565 PF11042 DA442_08565 DA442_08570 PF00990 GGDEF domain DA442_08570 PF13176 Tetratricopeptide repeat DA442_08570 PF13424 Tetratricopeptide repeat DA442_08575 PF06508 Queuosine biosynthesis protein QueC DA442_08580 PF13394 4Fe-4S single cluster domain DA442_08585 PF08282 haloacid dehalogenase-like hydrolase DA442_08590 PF00293 NUDIX domain DA442_08590 PF01569 PAP2 superfamily DA442_08595 PF00089 Trypsin DA442_08595 PF02839 Carbohydrate binding domain DA442_08600 PF00583 Acetyltransferase (GNAT) family DA442_08605 PF00501 AMP-binding enzyme DA442_08605 PF13193 AMP-binding enzyme C-terminal domain DA442_08605 PF16177 DA442_08605 DA442_08610 PF04303 PrpF protein DA442_08615 PF00330 Aconitase family (aconitate hydratase) DA442_08615 PF00694 Aconitase C-terminal domain DA442_08620 PF00285 Citrate synthase DA442_08630 PF00392 Bacterial regulatory proteins, gntR family DA442_08630 PF07729 FCD domain DA442_08635 PF04828 Glutathione-dependent formaldehyde-activating enzyme DA442_08640 PF03401 Tripartite tricarboxylate transporter family receptor DA442_08645 PF07331 DA442_08645 DA442_08650 PF01970 DA442_08650 DA442_08660 PF16868 DA442_08660 DA442_08670 PF04888 DA442_08670 DA442_08675 PF07720 Tetratricopeptide repeat DA442_08680 PF04792 V antigen (LcrV) protein DA442_08685 PF07216 DA442_08685 DA442_08690 PF09621 DA442_08690 DA442_08695 PF00771 FHIPEP family DA442_08700 PF14559 Tetratricopeptide repeat DA442_08705 PF09474 DA442_08705 DA442_08710 PF05932 Tir chaperone protein (CesT) family DA442_08715 PF09059 TyeA DA442_08720 PF07201 HrpJ-like domain DA442_08725 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DA442_08725 PF02874 ATP synthase alpha/beta family, beta-barrel domain DA442_08730 PF07321 Type III secretion protein YscO DA442_08740 PF01052 Surface presentation of antigens (SPOA) DA442_08745 PF00813 DA442_08745 DA442_08750 PF01313 DA442_08750 DA442_08755 PF01311 DA442_08755 DA442_08760 PF01312 FlhB HrpN YscU SpaS Family DA442_08765 PF00440 Bacterial regulatory proteins, tetR family DA442_08765 PF14246 AefR-like transcriptional repressor, C-terminal region DA442_08775 PF00529 HlyD family secretion protein DA442_08775 PF16576 DA442_08775 DA442_08785 PF05932 Tir chaperone protein (CesT) family DA442_08800 PF05932 Tir chaperone protein (CesT) family DA442_08810 PF02661 Fic/DOC family DA442_08815 PF05932 Tir chaperone protein (CesT) family DA442_08820 PF02108 DA442_08820 DA442_08825 PF06578 DA442_08825 DA442_08830 PF01514 Secretory protein of YscJ/FliF family DA442_08835 PF17001 DA442_08835 DA442_08840 PF09025 YopR Core DA442_08845 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) DA442_08850 PF09392 Type III secretion needle MxiH like DA442_08855 PF08988 Protein of unknown function (DUF1895) DA442_08860 PF16693 DA442_08860 DA442_08860 PF16697 DA442_08860 DA442_08865 PF00263 DA442_08865 DA442_08865 PF03958 Bacterial type II/III secretion system short domain DA442_08870 PF05932 Tir chaperone protein (CesT) family DA442_08875 PF16806 DA442_08875 DA442_08880 PF12833 Helix-turn-helix domain DA442_08885 PF09619 Type III secretion system lipoprotein chaperone (YscW) DA442_08890 PF05932 Tir chaperone protein (CesT) family DA442_08900 PF00171 Aldehyde dehydrogenase family DA442_08905 PF00158 Sigma-54 interaction domain DA442_08905 PF01590 GAF domain DA442_08905 PF02954 Bacterial regulatory protein, Fis family DA442_08925 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DA442_08930 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain DA442_08930 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain DA442_08935 PF00072 Response regulator receiver domain DA442_08935 PF12431 DA442_08935 DA442_08940 PF00989 PAS fold DA442_08940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_08940 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain DA442_08940 PF17203 DA442_08940 DA442_08950 PF02321 Outer membrane efflux protein DA442_08955 PF13437 HlyD family secretion protein DA442_08955 PF13533 Biotin-lipoyl like DA442_08960 PF12698 ABC-2 family transporter protein DA442_08965 PF12698 ABC-2 family transporter protein DA442_08970 PF00034 Cytochrome c DA442_08970 PF03150 Di-haem cytochrome c peroxidase DA442_08975 PF00696 Amino acid kinase family DA442_08980 PF06339 DA442_08980 DA442_08985 PF00202 Aminotransferase class-III DA442_08990 PF00583 Acetyltransferase (GNAT) family DA442_08995 PF02028 BCCT family transporter DA442_09000 PF00929 Exonuclease DA442_09005 PF00027 Cyclic nucleotide-binding domain DA442_09005 PF00571 CBS domain DA442_09005 PF03445 DA442_09005 DA442_09005 PF10335 DA442_09005 DA442_09010 PF00005 ABC transporter DA442_09010 PF00571 CBS domain DA442_09015 PF00528 Binding-protein-dependent transport system inner membrane component DA442_09020 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DA442_09025 PF12261 DA442_09025 DA442_09030 PF00501 AMP-binding enzyme DA442_09035 PF14518 Iron-containing redox enzyme DA442_09040 PF00106 short chain dehydrogenase DA442_09045 PF13181 Tetratricopeptide repeat DA442_09050 PF00072 Response regulator receiver domain DA442_09050 PF00486 Transcriptional regulatory protein, C terminal DA442_09055 PF00512 His Kinase A (phospho-acceptor) domain DA442_09055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_09055 PF08521 DA442_09055 DA442_09060 PF00884 Sulfatase DA442_09085 PF01235 DA442_09085 DA442_09095 PF01810 DA442_09095 DA442_09100 PF02074 Carboxypeptidase Taq (M32) metallopeptidase DA442_09105 PF03279 DA442_09105 DA442_09115 PF13520 Amino acid permease DA442_09130 PF04204 Homoserine O-succinyltransferase DA442_09135 PF13431 Tetratricopeptide repeat DA442_09135 PF14559 Tetratricopeptide repeat DA442_09140 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein DA442_09165 PF12464 Maltose acetyltransferase DA442_09165 PF14602 Hexapeptide repeat of succinyl-transferase DA442_09175 PF01928 CYTH domain DA442_09185 PF04237 YjbR DA442_09190 PF01047 MarR family DA442_09195 PF00892 EamA-like transporter family DA442_09215 PF00563 EAL domain DA442_09225 PF01368 DHH family DA442_09225 PF02833 DHHA2 domain DA442_09230 PF00202 Aminotransferase class-III DA442_09240 PF04371 Porphyromonas-type peptidyl-arginine deiminase DA442_09245 PF00795 Carbon-nitrogen hydrolase DA442_09250 PF01266 FAD dependent oxidoreductase DA442_09255 PF00171 Aldehyde dehydrogenase family DA442_09260 PF01381 Helix-turn-helix DA442_09260 PF07883 Cupin domain DA442_09265 PF07722 Peptidase C26 DA442_09275 PF00120 Glutamine synthetase, catalytic domain DA442_09280 PF03553 DA442_09280 DA442_09290 PF11695 DA442_09290 DA442_09330 PF13333 DA442_09330 DA442_09335 PF00665 Integrase core domain DA442_09335 PF13276 DA442_09335 DA442_09365 PF11665 DA442_09365 DA442_09385 PF11665 DA442_09385 DA442_09405 PF11665 DA442_09405 DA442_09415 PF11665 DA442_09415 DA442_09425 PF11665 DA442_09425 DA442_09435 PF11665 DA442_09435 DA442_09440 PF08239 Bacterial SH3 domain DA442_09450 PF04221 RelB antitoxin DA442_09455 PF05016 Plasmid stabilisation system protein DA442_09460 PF11665 DA442_09460 DA442_09475 PF03981 DA442_09475 DA442_09475 PF13099 DA442_09475 DA442_09480 PF14082 DA442_09480 DA442_09485 PF01337 Barstar (barnase inhibitor) DA442_09500 PF11665 DA442_09500 DA442_09510 PF11665 DA442_09510 DA442_09515 PF01939 Protein of unknown function DUF91 DA442_09530 PF11665 DA442_09530 DA442_09555 PF11665 DA442_09555 DA442_09565 PF11665 DA442_09565 DA442_09575 PF11665 DA442_09575 DA442_09580 PF05016 Plasmid stabilisation system protein DA442_09585 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system DA442_09590 PF11665 DA442_09590 DA442_09600 PF11665 DA442_09600 DA442_09610 PF11665 DA442_09610 DA442_09620 PF13476 AAA domain DA442_09625 PF11665 DA442_09625 DA442_09635 PF11665 DA442_09635 DA442_09655 PF11665 DA442_09655 DA442_09695 PF11665 DA442_09695 DA442_09710 PF11665 DA442_09710 DA442_09715 PF12680 SnoaL-like domain DA442_09720 PF13643 DA442_09720 DA442_09725 PF11665 DA442_09725 DA442_09735 PF11665 DA442_09735 DA442_09755 PF11665 DA442_09755 DA442_09765 PF13527 Acetyltransferase (GNAT) domain DA442_09775 PF11665 DA442_09775 DA442_09780 PF16695 DA442_09780 DA442_09790 PF00293 NUDIX domain DA442_09795 PF11665 DA442_09795 DA442_09800 PF11665 DA442_09800 DA442_09805 PF13527 Acetyltransferase (GNAT) domain DA442_09820 PF11665 DA442_09820 DA442_09830 PF11665 DA442_09830 DA442_09835 PF01844 HNH endonuclease DA442_09840 PF12874 Zinc-finger of C2H2 type DA442_09845 PF11665 DA442_09845 DA442_09860 PF00857 Isochorismatase family DA442_09875 PF11665 DA442_09875 DA442_09895 PF03692 DA442_09895 DA442_09900 PF11665 DA442_09900 DA442_09920 PF11665 DA442_09920 DA442_09935 PF11665 DA442_09935 DA442_09970 PF11665 DA442_09970 DA442_09980 PF11665 DA442_09980 DA442_09995 PF11665 DA442_09995 DA442_10015 PF11665 DA442_10015 DA442_10020 PF04471 Restriction endonuclease DA442_10025 PF11665 DA442_10025 DA442_10040 PF12358 DA442_10040 DA442_10050 PF00583 Acetyltransferase (GNAT) family DA442_10055 PF11665 DA442_10055 DA442_10075 PF02810 SEC-C motif DA442_10095 PF11665 DA442_10095 DA442_10105 PF08818 Domain of unknown function (DU1801) DA442_10135 PF11665 DA442_10135 DA442_10145 PF11665 DA442_10145 DA442_10155 PF11665 DA442_10155 DA442_10160 PF05016 Plasmid stabilisation system protein DA442_10165 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system DA442_10170 PF13673 Acetyltransferase (GNAT) domain DA442_10175 PF11185 DA442_10175 DA442_10180 PF13673 Acetyltransferase (GNAT) domain DA442_10185 PF11665 DA442_10185 DA442_10195 PF11665 DA442_10195 DA442_10205 PF11665 DA442_10205 DA442_10210 PF11665 DA442_10210 DA442_10215 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DA442_10225 PF11665 DA442_10225 DA442_10230 PF11185 DA442_10230 DA442_10245 PF11665 DA442_10245 DA442_10270 PF11665 DA442_10270 DA442_10280 PF11665 DA442_10280 DA442_10285 PF07653 Variant SH3 domain DA442_10290 PF06769 Plasmid encoded toxin Txe DA442_10295 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system DA442_10300 PF11665 DA442_10300 DA442_10305 PF01202 Shikimate kinase DA442_10310 PF11665 DA442_10310 DA442_10315 PF11665 DA442_10315 DA442_10325 PF11665 DA442_10325 DA442_10340 PF05163 DinB family DA442_10350 PF13127 DA442_10350 DA442_10355 PF11665 DA442_10355 DA442_10360 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DA442_10365 PF11665 DA442_10365 DA442_10380 PF13673 Acetyltransferase (GNAT) domain DA442_10395 PF11665 DA442_10395 DA442_10420 PF11665 DA442_10420 DA442_10430 PF02566 OsmC-like protein DA442_10435 PF11665 DA442_10435 DA442_10440 PF05016 Plasmid stabilisation system protein DA442_10445 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system DA442_10465 PF14022 DA442_10465 DA442_10475 PF11196 DA442_10475 DA442_10490 PF11665 DA442_10490 DA442_10500 PF06271 DA442_10500 DA442_10510 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DA442_10525 PF00583 Acetyltransferase (GNAT) family DA442_10530 PF11665 DA442_10530 DA442_10540 PF11665 DA442_10540 DA442_10550 PF11665 DA442_10550 DA442_10580 PF00589 Phage integrase family DA442_10580 PF13495 Phage integrase, N-terminal SAM-like domain DA442_10585 PF11163 DA442_10585 DA442_10590 PF13023 HD domain DA442_10595 PF13302 Acetyltransferase (GNAT) domain DA442_10600 PF00158 Sigma-54 interaction domain DA442_10600 PF00989 PAS fold DA442_10605 PF05128 DA442_10605 DA442_10610 PF04317 DA442_10610 DA442_10620 PF05681 DA442_10620 DA442_10620 PF05683 Fumarase C-terminus DA442_10630 PF00425 chorismate binding enzyme DA442_10630 PF04715 Anthranilate synthase component I, N terminal region DA442_10635 PF00072 Response regulator receiver domain DA442_10635 PF00512 His Kinase A (phospho-acceptor) domain DA442_10635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_10640 PF07700 Heme NO binding DA442_10645 PF00293 NUDIX domain DA442_10650 PF03222 Tryptophan/tyrosine permease family DA442_10655 PF03313 DA442_10655 DA442_10655 PF03315 Serine dehydratase beta chain DA442_10660 PF00563 EAL domain DA442_10665 PF00583 Acetyltransferase (GNAT) family DA442_10670 PF01242 6-pyruvoyl tetrahydropterin synthase DA442_10675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_10680 PF00152 tRNA synthetases class II (D, K and N) DA442_10680 PF01336 OB-fold nucleic acid binding domain DA442_10690 PF00155 Aminotransferase class I and II DA442_10690 PF00392 Bacterial regulatory proteins, gntR family DA442_10715 PF00155 Aminotransferase class I and II DA442_10720 PF13505 Outer membrane protein beta-barrel domain DA442_10725 PF00027 Cyclic nucleotide-binding domain DA442_10725 PF00571 CBS domain DA442_10725 PF03445 DA442_10725 DA442_10725 PF10335 DA442_10725 DA442_10730 PF00929 Exonuclease DA442_10735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_10735 PF00672 HAMP domain DA442_10735 PF02743 Cache domain DA442_10740 PF02028 BCCT family transporter DA442_10745 PF01047 MarR family DA442_10750 PF00072 Response regulator receiver domain DA442_10750 PF00196 Bacterial regulatory proteins, luxR family DA442_10755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_10755 PF07730 Histidine kinase DA442_10755 PF17200 DA442_10755 DA442_10760 PF06808 DA442_10760 DA442_10765 PF04290 DA442_10765 DA442_10770 PF03480 Bacterial extracellular solute-binding protein, family 7 DA442_10780 PF11201 DA442_10780 DA442_10785 PF00753 Metallo-beta-lactamase superfamily DA442_10790 PF05951 DA442_10790 DA442_10795 PF01471 Putative peptidoglycan binding domain DA442_10795 PF03734 L,D-transpeptidase catalytic domain DA442_10800 PF07433 DA442_10800 DA442_10805 PF09375 Imelysin DA442_10810 PF06537 DA442_10810 DA442_10815 PF09375 Imelysin DA442_10820 PF00925 GTP cyclohydrolase II DA442_10830 PF03918 Cytochrome C biogenesis protein DA442_10835 PF08534 Redoxin DA442_10840 PF01578 DA442_10840 DA442_10840 PF16327 DA442_10840 DA442_10845 PF03916 DA442_10845 DA442_10850 PF12800 4Fe-4S binding domain DA442_10850 PF13247 4Fe-4S dicluster domain DA442_10855 PF13435 Cytochrome c554 and c-prime DA442_10860 PF02335 Cytochrome c552 DA442_10875 PF00521 DNA gyrase/topoisomerase IV, subunit A DA442_10875 PF03989 DNA gyrase C-terminal domain, beta-propeller DA442_10880 PF13489 Methyltransferase domain DA442_10885 PF00317 Ribonucleotide reductase, all-alpha domain DA442_10885 PF02867 Ribonucleotide reductase, barrel domain DA442_10885 PF03477 ATP cone domain DA442_10890 PF00268 Ribonucleotide reductase, small chain DA442_10895 PF00111 2Fe-2S iron-sulfur cluster binding domain DA442_10900 PF00994 Probable molybdopterin binding domain DA442_10905 PF13084 DA442_10905 DA442_10910 PF13740 ACT domain DA442_10920 PF03435 Saccharopine dehydrogenase DA442_10920 PF16653 DA442_10920 DA442_10925 PF00202 Aminotransferase class-III DA442_10925 PF00282 Pyridoxal-dependent decarboxylase conserved domain DA442_10950 PF01066 CDP-alcohol phosphatidyltransferase DA442_10955 PF01541 GIY-YIG catalytic domain DA442_10955 PF02151 UvrB/uvrC motif DA442_10955 PF08459 UvrC Helix-hairpin-helix N-terminal DA442_10955 PF14520 Helix-hairpin-helix domain DA442_10960 PF00072 Response regulator receiver domain DA442_10960 PF00196 Bacterial regulatory proteins, luxR family DA442_10965 PF00136 DNA polymerase family B DA442_10965 PF03104 DNA polymerase family B, exonuclease domain DA442_10975 PF01132 Elongation factor P (EF-P) OB domain DA442_10975 PF08207 Elongation factor P (EF-P) KOW-like domain DA442_10975 PF09285 Elongation factor P, C-terminal DA442_10980 PF04269 Protein of unknown function, DUF440 DA442_10990 PF00849 RNA pseudouridylate synthase DA442_10990 PF01479 S4 domain DA442_10995 PF00353 Hemolysin-type calcium-binding repeat (2 copies) DA442_11000 PF01300 Telomere recombination DA442_11005 PF02811 PHP domain DA442_11010 PF08056 DA442_11010 DA442_11015 PF00425 chorismate binding enzyme DA442_11015 PF04715 Anthranilate synthase component I, N terminal region DA442_11020 PF00117 Glutamine amidotransferase class-I DA442_11025 PF00591 Glycosyl transferase family, a/b domain DA442_11025 PF02885 Glycosyl transferase family, helical bundle domain DA442_11030 PF00218 Indole-3-glycerol phosphate synthase DA442_11030 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DA442_11035 PF00291 Pyridoxal-phosphate dependent enzyme DA442_11040 PF00290 Tryptophan synthase alpha chain DA442_11050 PF00027 Cyclic nucleotide-binding domain DA442_11050 PF13545 Crp-like helix-turn-helix domain DA442_11055 PF00501 AMP-binding enzyme DA442_11055 PF13193 AMP-binding enzyme C-terminal domain DA442_11065 PF00375 Sodium:dicarboxylate symporter family DA442_11085 PF04279 DA442_11085 DA442_11090 PF03061 Thioesterase superfamily DA442_11095 PF03795 YCII-related domain DA442_11100 PF16549 DA442_11100 DA442_11105 PF01717 Cobalamin-independent synthase, Catalytic domain DA442_11105 PF08267 Cobalamin-independent synthase, N-terminal domain DA442_11115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_11115 PF03466 LysR substrate binding domain DA442_11120 PF14056 DA442_11120 DA442_11135 PF04055 Radical SAM superfamily DA442_11135 PF08497 DA442_11135 DA442_11135 PF11842 DA442_11135 DA442_11140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_11150 PF00072 Response regulator receiver domain DA442_11150 PF00486 Transcriptional regulatory protein, C terminal DA442_11155 PF00512 His Kinase A (phospho-acceptor) domain DA442_11155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_11160 PF00069 Protein kinase domain DA442_11160 PF13855 Leucine rich repeat DA442_11170 PF00857 Isochorismatase family DA442_11175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_11175 PF03466 LysR substrate binding domain DA442_11180 PF13437 HlyD family secretion protein DA442_11180 PF13533 Biotin-lipoyl like DA442_11185 PF11168 DA442_11185 DA442_11185 PF13515 DA442_11185 DA442_11190 PF01717 Cobalamin-independent synthase, Catalytic domain DA442_11195 PF08908 DA442_11195 DA442_11200 PF01965 DJ-1/PfpI family DA442_11200 PF12833 Helix-turn-helix domain DA442_11205 PF00857 Isochorismatase family DA442_11210 PF00005 ABC transporter DA442_11215 PF02687 DA442_11215 DA442_11215 PF12704 MacB-like periplasmic core domain DA442_11220 PF02687 DA442_11220 DA442_11220 PF12704 MacB-like periplasmic core domain DA442_11225 PF02321 Outer membrane efflux protein DA442_11230 PF16576 DA442_11230 DA442_11235 PF13302 Acetyltransferase (GNAT) domain DA442_11240 PF00583 Acetyltransferase (GNAT) family DA442_11245 PF13649 Methyltransferase domain DA442_11260 PF00085 Thioredoxin DA442_11265 PF11412 Disulphide bond corrector protein DsbC DA442_11265 PF13899 Thioredoxin-like DA442_11275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_11275 PF03466 LysR substrate binding domain DA442_11280 PF00072 Response regulator receiver domain DA442_11280 PF00196 Bacterial regulatory proteins, luxR family DA442_11285 PF00512 His Kinase A (phospho-acceptor) domain DA442_11285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_11285 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein DA442_11290 PF13247 4Fe-4S dicluster domain DA442_11295 PF03916 DA442_11295 DA442_11300 PF00384 Molybdopterin oxidoreductase DA442_11300 PF01568 Molydopterin dinucleotide binding domain DA442_11305 PF00034 Cytochrome c DA442_11310 PF13442 Cytochrome C oxidase, cbb3-type, subunit III DA442_11320 PF02470 DA442_11320 DA442_11325 PF03886 Protein of unknown function (DUF330) DA442_11330 PF13231 DA442_11330 DA442_11335 PF09335 DA442_11335 DA442_11340 PF00535 Glycosyl transferase family 2 DA442_11345 PF16363 DA442_11345 DA442_11355 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DA442_11360 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DA442_11370 PF06305 DA442_11370 DA442_11375 PF00216 Bacterial DNA-binding protein DA442_11380 PF00575 S1 RNA binding domain DA442_11385 PF02224 Cytidylate kinase DA442_11390 PF01343 Peptidase family S49 DA442_11390 PF08496 DA442_11390 DA442_11395 PF00106 short chain dehydrogenase DA442_11400 PF00154 recA bacterial DNA recombination protein DA442_11405 PF00817 impB/mucB/samB family DA442_11410 PF01336 OB-fold nucleic acid binding domain DA442_11410 PF02811 PHP domain DA442_11410 PF07733 Bacterial DNA polymerase III alpha subunit DA442_11410 PF14579 Helix-hairpin-helix motif DA442_11415 PF00072 Response regulator receiver domain DA442_11415 PF01584 CheW-like domain DA442_11420 PF00480 ROK family DA442_11425 PF00224 Pyruvate kinase, barrel domain DA442_11425 PF02887 Pyruvate kinase, alpha/beta domain DA442_11430 PF01734 Patatin-like phospholipase DA442_11440 PF13505 Outer membrane protein beta-barrel domain DA442_11445 PF00209 Sodium:neurotransmitter symporter family DA442_11465 PF00367 phosphotransferase system, EIIB DA442_11465 PF02378 Phosphotransferase system, EIIC DA442_11470 PF01026 TatD related DNase DA442_11475 PF09115 DNA polymerase III, delta subunit, C terminal DA442_11475 PF13177 DNA polymerase III, delta subunit DA442_11480 PF02223 Thymidylate kinase DA442_11485 PF02618 YceG-like family DA442_11490 PF01063 Aminotransferase class IV DA442_11495 PF00109 Beta-ketoacyl synthase, N-terminal domain DA442_11495 PF02801 Beta-ketoacyl synthase, C-terminal domain DA442_11500 PF00550 Phosphopantetheine attachment site DA442_11505 PF13561 Enoyl-(Acyl carrier protein) reductase DA442_11510 PF00698 Acyl transferase domain DA442_11515 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DA442_11515 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DA442_11520 PF02504 Fatty acid synthesis protein DA442_11525 PF01783 Ribosomal L32p protein family DA442_11530 PF02620 DA442_11530 DA442_11535 PF02545 Maf-like protein DA442_11540 PF00849 RNA pseudouridylate synthase DA442_11540 PF01479 S4 domain DA442_11555 PF00575 S1 RNA binding domain DA442_11555 PF10150 Ribonuclease E/G family DA442_11565 PF00916 DA442_11565 DA442_11565 PF01740 STAS domain DA442_11570 PF01451 Low molecular weight phosphotyrosine protein phosphatase DA442_11575 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP DA442_11575 PF12557 Cob(I)alamin adenosyltransferase N terminal DA442_11580 PF05170 DA442_11580 DA442_11585 PF00485 Phosphoribulokinase / Uridine kinase family DA442_11595 PF01588 Putative tRNA binding domain DA442_11595 PF09334 tRNA synthetases class I (M) DA442_11605 PF00392 Bacterial regulatory proteins, gntR family DA442_11605 PF07840 FadR C-terminal domain DA442_11610 PF06450 DA442_11610 DA442_11615 PF02600 Disulfide bond formation protein DsbB DA442_11620 PF02810 SEC-C motif DA442_11620 PF03695 Uncharacterised protein family (UPF0149) DA442_11625 PF01207 Dihydrouridine synthase (Dus) DA442_11630 PF00990 GGDEF domain DA442_11635 PF00128 Alpha amylase, catalytic domain DA442_11635 PF02903 Alpha amylase, N-terminal ig-like domain DA442_11640 PF00005 ABC transporter DA442_11650 PF04392 ABC transporter substrate binding protein DA442_11655 PF04217 DA442_11655 DA442_11660 PF00871 Acetokinase family DA442_11665 PF01515 Phosphate acetyl/butaryl transferase DA442_11665 PF07085 DRTGG domain DA442_11665 PF13500 AAA domain DA442_11670 PF02308 DA442_11670 DA442_11670 PF13194 DA442_11670 DA442_11680 PF13409 Glutathione S-transferase, N-terminal domain DA442_11680 PF13410 Glutathione S-transferase, C-terminal domain DA442_11685 PF00005 ABC transporter DA442_11685 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DA442_11690 PF00005 ABC transporter DA442_11690 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DA442_11695 PF00528 Binding-protein-dependent transport system inner membrane component DA442_11695 PF12911 DA442_11695 DA442_11700 PF00528 Binding-protein-dependent transport system inner membrane component DA442_11705 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DA442_11710 PF02391 MoaE protein DA442_11715 PF02597 ThiS family DA442_11720 PF01967 MoaC family DA442_11725 PF00994 Probable molybdopterin binding domain DA442_11730 PF04055 Radical SAM superfamily DA442_11730 PF06463 Molybdenum Cofactor Synthesis C DA442_11730 PF13353 4Fe-4S single cluster domain DA442_11735 PF01933 Uncharacterised protein family UPF0052 DA442_11740 PF01627 Hpt domain DA442_11750 PF00271 Helicase conserved C-terminal domain DA442_11750 PF02151 UvrB/uvrC motif DA442_11750 PF04851 Type III restriction enzyme, res subunit DA442_11750 PF12344 Ultra-violet resistance protein B DA442_11765 PF02508 DA442_11765 DA442_11770 PF04060 Putative Fe-S cluster DA442_11770 PF14697 4Fe-4S dicluster domain DA442_11775 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DA442_11775 PF10531 SLBB domain DA442_11775 PF12838 4Fe-4S dicluster domain DA442_11775 PF13375 RnfC Barrel sandwich hybrid domain DA442_11780 PF03116 DA442_11780 DA442_11785 PF04205 FMN-binding domain DA442_11790 PF02508 DA442_11790 DA442_11795 PF00633 Helix-hairpin-helix motif DA442_11795 PF00730 HhH-GPD superfamily base excision DNA repair protein DA442_11795 PF10576 Iron-sulfur binding domain of endonuclease III DA442_11800 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DA442_11805 PF10952 DA442_11805 DA442_11810 PF00691 OmpA family DA442_11825 PF00929 Exonuclease DA442_11830 PF03553 DA442_11830 DA442_11830 PF13726 DA442_11830 DA442_11835 PF13743 Thioredoxin DA442_11840 PF00462 Glutaredoxin DA442_11845 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DA442_11845 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DA442_11850 PF11993 DA442_11850 DA442_11855 PF00106 short chain dehydrogenase DA442_11860 PF00171 Aldehyde dehydrogenase family DA442_11860 PF00465 Iron-containing alcohol dehydrogenase DA442_11865 PF01914 DA442_11865 DA442_11870 PF00520 Ion transport protein DA442_11875 PF01118 Semialdehyde dehydrogenase, NAD binding domain DA442_11875 PF02774 Semialdehyde dehydrogenase, dimerisation domain DA442_11880 PF03553 DA442_11880 DA442_11890 PF01627 Hpt domain DA442_11895 PF04245 DA442_11895 DA442_11900 PF07208 Protein of unknown function (DUF1414) DA442_11905 PF00884 Sulfatase DA442_11905 PF11893 DA442_11905 DA442_11915 PF00850 Histone deacetylase domain DA442_11920 PF00106 short chain dehydrogenase DA442_11935 PF01131 DNA topoisomerase DA442_11935 PF01751 Toprim domain DA442_11940 PF00881 Nitroreductase family DA442_11945 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DA442_11945 PF07992 Pyridine nucleotide-disulphide oxidoreductase DA442_11955 PF00710 Asparaginase DA442_11960 PF07023 DA442_11960 DA442_11965 PF11207 DA442_11965 DA442_11970 PF01641 SelR domain DA442_11975 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DA442_11975 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DA442_11980 PF01263 Aldose 1-epimerase DA442_11985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_11985 PF17201 DA442_11985 DA442_11990 PF13847 Methyltransferase domain DA442_11995 PF04187 Protein of unknown function, DUF399 DA442_12010 PF00245 Alkaline phosphatase DA442_12015 PF13467 Ribbon-helix-helix domain DA442_12020 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DA442_12025 PF03992 Antibiotic biosynthesis monooxygenase DA442_12030 PF00924 Mechanosensitive ion channel DA442_12035 PF03692 DA442_12035 DA442_12040 PF04226 DA442_12040 DA442_12045 PF03692 DA442_12045 DA442_12055 PF03313 DA442_12055 DA442_12060 PF01042 Endoribonuclease L-PSP DA442_12070 PF00230 Major intrinsic protein DA442_12075 PF02132 RecR protein DA442_12075 PF13662 Toprim domain DA442_12080 PF02575 YbaB/EbfC DNA-binding family DA442_12085 PF12168 DA442_12085 DA442_12085 PF12169 DNA polymerase III subunits gamma and tau domain III DA442_12085 PF12170 DNA polymerase III tau subunit V interacting with alpha DA442_12085 PF13177 DNA polymerase III, delta subunit DA442_12090 PF00156 Phosphoribosyl transferase domain DA442_12095 PF04304 DA442_12095 DA442_12105 PF00072 Response regulator receiver domain DA442_12110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_12110 PF03466 LysR substrate binding domain DA442_12115 PF00156 Phosphoribosyl transferase domain DA442_12115 PF13522 Glutamine amidotransferase domain DA442_12120 PF02674 DA442_12120 DA442_12125 PF05036 Sporulation related domain DA442_12130 PF02875 Mur ligase family, glutamate ligase domain DA442_12130 PF08245 Mur ligase middle domain DA442_12135 PF01039 Carboxyl transferase domain DA442_12140 PF01416 tRNA pseudouridine synthase DA442_12150 PF01118 Semialdehyde dehydrogenase, NAD binding domain DA442_12150 PF02774 Semialdehyde dehydrogenase, dimerisation domain DA442_12155 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DA442_12155 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DA442_12155 PF11890 Domain of unknown function (DUF3410) DA442_12165 PF00109 Beta-ketoacyl synthase, N-terminal domain DA442_12165 PF02801 Beta-ketoacyl synthase, C-terminal domain DA442_12170 PF01266 FAD dependent oxidoreductase DA442_12170 PF05430 S-adenosyl-L-methionine-dependent methyltransferase DA442_12185 PF08891 DA442_12185 DA442_12190 PF04315 DA442_12190 DA442_12200 PF03458 DA442_12200 DA442_12205 PF01264 Chorismate synthase DA442_12210 PF05175 Methyltransferase small domain DA442_12220 PF00300 Histidine phosphatase superfamily (branch 1) DA442_12235 PF00378 Enoyl-CoA hydratase/isomerase family DA442_12235 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DA442_12235 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DA442_12240 PF00108 Thiolase, N-terminal domain DA442_12240 PF02803 Thiolase, C-terminal domain DA442_12250 PF04542 Sigma-70 region 2 DA442_12250 PF08281 Sigma-70, region 4 DA442_12255 PF11859 DA442_12255 DA442_12260 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) DA442_12265 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) DA442_12270 PF04333 DA442_12270 DA442_12275 PF14559 Tetratricopeptide repeat DA442_12280 PF03918 Cytochrome C biogenesis protein DA442_12285 PF08534 Redoxin DA442_12290 PF01578 DA442_12290 DA442_12290 PF16327 DA442_12290 DA442_12300 PF04995 DA442_12300 DA442_12305 PF01578 DA442_12305 DA442_12310 PF03379 DA442_12310 DA442_12315 PF00005 ABC transporter DA442_12320 PF10975 DA442_12320 DA442_12325 PF01584 CheW-like domain DA442_12330 PF01584 CheW-like domain DA442_12335 PF13614 AAA domain DA442_12340 PF00072 Response regulator receiver domain DA442_12340 PF01339 CheB methylesterase DA442_12345 PF01584 CheW-like domain DA442_12345 PF01627 Hpt domain DA442_12345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_12345 PF02895 Signal transducing histidine kinase, homodimeric domain DA442_12350 PF04344 Chemotaxis phosphatase, CheZ DA442_12355 PF00072 Response regulator receiver domain DA442_12360 PF04539 Sigma-70 region 3 DA442_12360 PF04542 Sigma-70 region 2 DA442_12360 PF04545 Sigma-70, region 4 DA442_12365 PF10609 ParA/MinD ATPase like DA442_12370 PF00448 SRP54-type protein, GTPase domain DA442_12375 PF00771 FHIPEP family DA442_12380 PF01312 FlhB HrpN YscU SpaS Family DA442_12385 PF01311 DA442_12385 DA442_12390 PF01313 DA442_12390 DA442_12395 PF00813 DA442_12395 DA442_12400 PF04347 DA442_12400 DA442_12405 PF01052 Surface presentation of antigens (SPOA) DA442_12410 PF01052 Surface presentation of antigens (SPOA) DA442_12410 PF02154 Flagellar motor switch protein FliM DA442_12415 PF03748 DA442_12415 DA442_12420 PF02120 Flagellar hook-length control protein FliK DA442_12425 PF02050 Flagellar FliJ protein DA442_12430 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DA442_12435 PF02108 DA442_12435 DA442_12440 PF01706 FliG C-terminal domain DA442_12440 PF14841 FliG middle domain DA442_12440 PF14842 FliG N-terminal domain DA442_12445 PF01514 Secretory protein of YscJ/FliF family DA442_12445 PF08345 DA442_12445 DA442_12450 PF02049 DA442_12450 DA442_12455 PF00072 Response regulator receiver domain DA442_12455 PF00158 Sigma-54 interaction domain DA442_12455 PF02954 Bacterial regulatory protein, Fis family DA442_12460 PF00512 His Kinase A (phospho-acceptor) domain DA442_12460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_12460 PF13188 PAS domain DA442_12465 PF00158 Sigma-54 interaction domain DA442_12465 PF02954 Bacterial regulatory protein, Fis family DA442_12465 PF06490 DA442_12465 DA442_12470 PF02561 Flagellar protein FliS DA442_12480 PF02465 DA442_12480 DA442_12480 PF07195 DA442_12480 DA442_12480 PF07196 Flagellin hook IN motif DA442_12485 PF03646 FlaG protein DA442_12495 PF00669 Bacterial flagellin N-terminal helical region DA442_12495 PF00700 Bacterial flagellin C-terminal helical region DA442_12495 PF07196 Flagellin hook IN motif DA442_12505 PF00669 Bacterial flagellin N-terminal helical region DA442_12505 PF00700 Bacterial flagellin C-terminal helical region DA442_12505 PF07196 Flagellin hook IN motif DA442_12510 PF04261 Dyp-type peroxidase family DA442_12515 PF11143 DA442_12515 DA442_12520 PF11169 DA442_12520 DA442_12525 PF13698 DA442_12525 DA442_12530 PF09904 Winged helix-turn helix DA442_12540 PF03960 ArsC family DA442_12545 PF01546 Peptidase family M20/M25/M40 DA442_12545 PF07687 Peptidase dimerisation domain DA442_12550 PF02557 D-alanyl-D-alanine carboxypeptidase DA442_12555 PF11446 DA442_12555 DA442_12560 PF06804 NlpB/DapX lipoprotein DA442_12565 PF00701 Dihydrodipicolinate synthetase family DA442_12570 PF13740 ACT domain DA442_12575 PF00578 AhpC/TSA family DA442_12580 PF01594 DA442_12580 DA442_12585 PF01206 Sulfurtransferase TusA DA442_12590 PF01435 Peptidase family M48 DA442_12590 PF14559 Tetratricopeptide repeat DA442_12595 PF03960 ArsC family DA442_12600 PF03358 NADPH-dependent FMN reductase DA442_12605 PF09842 DA442_12605 DA442_12610 PF09839 DA442_12610 DA442_12615 PF00860 Permease family DA442_12620 PF14681 Uracil phosphoribosyltransferase DA442_12625 PF00586 AIR synthase related protein, N-terminal domain DA442_12625 PF02769 AIR synthase related protein, C-terminal domain DA442_12630 PF00551 Formyl transferase DA442_12635 PF13230 Glutamine amidotransferases class-II DA442_12640 PF13580 SIS domain DA442_12645 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DA442_12645 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DA442_12645 PF09317 DA442_12645 DA442_12650 PF00916 DA442_12650 DA442_12650 PF01740 STAS domain DA442_12655 PF13508 Acetyltransferase (GNAT) domain DA442_12665 PF01909 Nucleotidyltransferase domain DA442_12675 PF00929 Exonuclease DA442_12680 PF00075 RNase H DA442_12685 PF08241 Methyltransferase domain DA442_12690 PF00753 Metallo-beta-lactamase superfamily DA442_12690 PF16123 DA442_12690 DA442_12695 PF01464 Transglycosylase SLT domain DA442_12695 PF01476 LysM domain DA442_12700 PF06930 DA442_12700 DA442_12705 PF03372 Endonuclease/Exonuclease/phosphatase family DA442_12710 PF00543 Nitrogen regulatory protein P-II DA442_12715 PF00034 Cytochrome c DA442_12720 PF01171 PP-loop family DA442_12720 PF09179 TilS substrate binding domain DA442_12720 PF11734 TilS substrate C-terminal domain DA442_12725 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DA442_12730 PF01336 OB-fold nucleic acid binding domain DA442_12730 PF02811 PHP domain DA442_12730 PF07733 Bacterial DNA polymerase III alpha subunit DA442_12730 PF14579 Helix-hairpin-helix motif DA442_12740 PF00132 Bacterial transferase hexapeptide (six repeats) DA442_12740 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DA442_12745 PF07977 FabA-like domain DA442_12750 PF00132 Bacterial transferase hexapeptide (six repeats) DA442_12750 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD DA442_12750 PF14602 Hexapeptide repeat of succinyl-transferase DA442_12755 PF03938 Outer membrane protein (OmpH-like) DA442_12760 PF01103 Surface antigen DA442_12760 PF07244 Surface antigen variable number repeat DA442_12765 PF02163 Peptidase family M50 DA442_12765 PF13180 PDZ domain DA442_12770 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase DA442_12770 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal DA442_12770 PF13288 DXP reductoisomerase C-terminal domain DA442_12775 PF01148 Cytidylyltransferase family DA442_12780 PF01255 Putative undecaprenyl diphosphate synthase DA442_12785 PF01765 Ribosome recycling factor DA442_12790 PF00696 Amino acid kinase family DA442_12795 PF00889 Elongation factor TS DA442_12800 PF00318 Ribosomal protein S2 DA442_12805 PF00557 Metallopeptidase family M24 DA442_12810 PF01842 ACT domain DA442_12810 PF01909 Nucleotidyltransferase domain DA442_12810 PF01966 HD domain DA442_12810 PF08335 GlnD PII-uridylyltransferase DA442_12815 PF11944 DA442_12815 DA442_12820 PF00849 RNA pseudouridylate synthase DA442_12825 PF04287 tRNA pseudouridine synthase C DA442_12830 PF12069 DA442_12830 DA442_12835 PF11743 DA442_12835 DA442_12840 PF13302 Acetyltransferase (GNAT) domain DA442_12850 PF02639 DA442_12850 DA442_12855 PF03806 DA442_12855 DA442_12860 PF00444 Ribosomal protein L36 DA442_12865 PF01197 Ribosomal protein L31 DA442_12870 PF01980 Uncharacterised protein family UPF0066 DA442_12875 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DA442_12875 PF03129 Anticodon binding domain DA442_12875 PF04073 Aminoacyl-tRNA editing domain DA442_12880 PF04391 DA442_12880 DA442_12885 PF06786 DA442_12885 DA442_12890 PF14056 DA442_12890 DA442_12895 PF00209 Sodium:neurotransmitter symporter family DA442_12900 PF00704 Glycosyl hydrolases family 18 DA442_12905 PF11101 DA442_12905 DA442_12910 PF01272 Transcription elongation factor, GreA/GreB, C-term DA442_12915 PF00270 DEAD/DEAH box helicase DA442_12915 PF00271 Helicase conserved C-terminal domain DA442_12915 PF16124 DA442_12915 DA442_12920 PF00817 impB/mucB/samB family DA442_12920 PF11798 IMS family HHH motif DA442_12920 PF11799 impB/mucB/samB family C-terminal domain DA442_12925 PF10982 Protein of unknown function (DUF2789) DA442_12930 PF04400 DA442_12930 DA442_12935 PF02424 ApbE family DA442_12940 PF00111 2Fe-2S iron-sulfur cluster binding domain DA442_12940 PF00175 Oxidoreductase NAD-binding domain DA442_12940 PF00970 Oxidoreductase FAD-binding domain DA442_12945 PF02508 DA442_12945 DA442_12950 PF02508 DA442_12950 DA442_12955 PF04205 FMN-binding domain DA442_12960 PF03116 DA442_12960 DA442_12965 PF05896 DA442_12965 DA442_12965 PF11973 DA442_12965 DA442_12975 PF01722 BolA-like protein DA442_12980 PF05175 Methyltransferase small domain DA442_12980 PF08468 Methyltransferase small domain N-terminal DA442_12985 PF03923 DA442_12985 DA442_12990 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DA442_12995 PF07690 Major Facilitator Superfamily DA442_13000 PF12973 ChrR Cupin-like domain DA442_13005 PF04542 Sigma-70 region 2 DA442_13005 PF04545 Sigma-70, region 4 DA442_13010 PF14344 DA442_13010 DA442_13015 PF02190 ATP-dependent protease La (LON) domain DA442_13025 PF03502 Nucleoside-specific channel-forming protein, Tsx DA442_13030 PF02558 Ketopantoate reductase PanE/ApbA DA442_13030 PF08546 Ketopantoate reductase PanE/ApbA C terminal DA442_13035 PF01965 DJ-1/PfpI family DA442_13040 PF00266 Aminotransferase class-V DA442_13045 PF00990 GGDEF domain DA442_13050 PF02657 Fe-S metabolism associated domain DA442_13055 PF00899 ThiF family DA442_13060 PF03562 MltA specific insert domain DA442_13060 PF06725 3D domain DA442_13070 PF11012 DA442_13070 DA442_13075 PF00583 Acetyltransferase (GNAT) family DA442_13075 PF00696 Amino acid kinase family DA442_13095 PF01476 LysM domain DA442_13100 PF13538 UvrD-like helicase C-terminal domain DA442_13100 PF13604 AAA domain DA442_13105 PF00580 UvrD/REP helicase N-terminal domain DA442_13105 PF12705 PD-(D/E)XK nuclease superfamily DA442_13105 PF13361 UvrD-like helicase C-terminal domain DA442_13115 PF04257 Exodeoxyribonuclease V, gamma subunit DA442_13120 PF00884 Sulfatase DA442_13120 PF11893 DA442_13120 DA442_13125 PF03595 Voltage-dependent anion channel DA442_13130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_13130 PF03466 LysR substrate binding domain DA442_13135 PF07130 YebG protein DA442_13140 PF14602 Hexapeptide repeat of succinyl-transferase DA442_13140 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle DA442_13145 PF03009 Glycerophosphoryl diester phosphodiesterase family DA442_13150 PF07690 Major Facilitator Superfamily DA442_13165 PF00230 Major intrinsic protein DA442_13170 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DA442_13170 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DA442_13175 PF00455 DA442_13175 DA442_13175 PF08220 DeoR-like helix-turn-helix domain DA442_13180 PF01266 FAD dependent oxidoreductase DA442_13180 PF16901 DA442_13180 DA442_13185 PF01544 CorA-like Mg2+ transporter protein DA442_13190 PF05940 DA442_13190 DA442_13195 PF06094 AIG2-like family DA442_13200 PF01588 Putative tRNA binding domain DA442_13205 PF00356 Bacterial regulatory proteins, lacI family DA442_13205 PF13377 Periplasmic binding protein-like domain DA442_13210 PF13347 MFS/sugar transport protein DA442_13215 PF00150 Cellulase (glycosyl hydrolase family 5) DA442_13220 PF00356 Bacterial regulatory proteins, lacI family DA442_13220 PF13377 Periplasmic binding protein-like domain DA442_13225 PF01263 Aldose 1-epimerase DA442_13230 PF00288 GHMP kinases N terminal domain DA442_13230 PF08544 GHMP kinases C terminal DA442_13230 PF10509 Galactokinase galactose-binding signature DA442_13235 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain DA442_13235 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain DA442_13240 PF16363 DA442_13240 DA442_13250 PF00356 Bacterial regulatory proteins, lacI family DA442_13250 PF13377 Periplasmic binding protein-like domain DA442_13255 PF00703 Glycosyl hydrolases family 2 DA442_13255 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DA442_13255 PF02837 Glycosyl hydrolases family 2, sugar binding domain DA442_13255 PF02929 Beta galactosidase small chain DA442_13255 PF16353 DA442_13255 DA442_13260 PF04074 Domain of unknown function (DUF386) DA442_13265 PF13520 Amino acid permease DA442_13270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_13270 PF03466 LysR substrate binding domain DA442_13275 PF02417 DA442_13275 DA442_13280 PF14378 DA442_13280 DA442_13285 PF07719 Tetratricopeptide repeat DA442_13285 PF13181 Tetratricopeptide repeat DA442_13285 PF13432 Tetratricopeptide repeat DA442_13290 PF00482 Type II secretion system (T2SS), protein F DA442_13295 PF00482 Type II secretion system (T2SS), protein F DA442_13300 PF00437 Type II/IV secretion system protein DA442_13305 PF13614 AAA domain DA442_13310 PF07811 DA442_13310 DA442_13315 PF07811 DA442_13315 DA442_13320 PF13400 DA442_13320 DA442_13330 PF00263 DA442_13330 DA442_13330 PF13629 DA442_13330 DA442_13335 PF08666 SAF domain DA442_13335 PF16976 DA442_13335 DA442_13345 PF01478 Type IV leader peptidase family DA442_13355 PF12833 Helix-turn-helix domain DA442_13360 PF00501 AMP-binding enzyme DA442_13365 PF06568 DA442_13365 DA442_13370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_13370 PF03466 LysR substrate binding domain DA442_13375 PF00009 Elongation factor Tu GTP binding domain DA442_13375 PF00679 Elongation factor G C-terminus DA442_13375 PF03144 Elongation factor Tu domain 2 DA442_13375 PF03764 Elongation factor G, domain IV DA442_13375 PF14492 Elongation Factor G, domain II DA442_13380 PF13481 AAA domain DA442_13380 PF13541 Subunit ChlI of Mg-chelatase DA442_13385 PF07238 PilZ domain DA442_13390 PF00702 haloacid dehalogenase-like hydrolase DA442_13395 PF10144 DA442_13395 DA442_13400 PF01048 Phosphorylase superfamily DA442_13405 PF01676 Metalloenzyme superfamily DA442_13410 PF00591 Glycosyl transferase family, a/b domain DA442_13410 PF02885 Glycosyl transferase family, helical bundle domain DA442_13410 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain DA442_13415 PF01791 DeoC/LacD family aldolase DA442_13420 PF01773 Na+ dependent nucleoside transporter N-terminus DA442_13420 PF07662 Na+ dependent nucleoside transporter C-terminus DA442_13420 PF07670 Nucleoside recognition DA442_13425 PF01026 TatD related DNase DA442_13435 PF00009 Elongation factor Tu GTP binding domain DA442_13435 PF03144 Elongation factor Tu domain 2 DA442_13435 PF16658 DA442_13435 DA442_13440 PF00717 Peptidase S24-like DA442_13440 PF01381 Helix-turn-helix DA442_13445 PF15943 DA442_13445 DA442_13460 PF01464 Transglycosylase SLT domain DA442_13465 PF05247 Flagellar transcriptional activator (FlhD) DA442_13470 PF05280 Flagellar transcriptional activator (FlhC) DA442_13480 PF07916 DA442_13480 DA442_13485 PF06122 DA442_13485 DA442_13495 PF13737 DA442_13495 DA442_13500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_13500 PF08447 PAS fold DA442_13525 PF04002 RadC-like JAB domain DA442_13530 PF00092 von Willebrand factor type A domain DA442_13540 PF11348 DA442_13540 DA442_13550 PF07728 AAA domain (dynein-related subfamily) DA442_13550 PF08406 DA442_13550 DA442_13555 PF09588 YqaJ-like viral recombinase domain DA442_13560 PF03837 DA442_13560 DA442_13565 PF00436 Single-strand binding protein family DA442_13580 PF01381 Helix-turn-helix DA442_13585 PF07804 HipA-like C-terminal domain DA442_13585 PF13657 HipA N-terminal domain DA442_13590 PF06986 DA442_13590 DA442_13595 PF06834 DA442_13595 DA442_13600 PF09673 DA442_13600 DA442_13605 PF10502 Signal peptidase, peptidase S26 DA442_13615 PF11130 DA442_13615 DA442_13615 PF12846 AAA-like domain DA442_13620 PF10411 Disulfide bond isomerase protein N-terminus DA442_13620 PF13098 Thioredoxin-like domain DA442_13625 PF07751 DA442_13625 DA442_13635 PF08681 Protein of unknown function (DUF1778) DA442_13640 PF13508 Acetyltransferase (GNAT) domain DA442_13650 PF09676 DA442_13650 DA442_13655 PF03743 Bacterial conjugation TrbI-like protein DA442_13660 PF06586 DA442_13660 DA442_13665 PF05309 DA442_13665 DA442_13670 PF07178 DA442_13670 DA442_13675 PF01381 Helix-turn-helix DA442_13680 PF02661 Fic/DOC family DA442_13680 PF13776 DA442_13680 DA442_13685 PF14348 DA442_13685 DA442_13695 PF10412 Type IV secretion-system coupling protein DNA-binding domain DA442_13695 PF12696 TraM recognition site of TraD and TraG DA442_13700 PF07514 Putative helicase DA442_13705 PF13476 AAA domain DA442_13710 PF05362 Lon protease (S16) C-terminal proteolytic domain DA442_13710 PF13337 DA442_13710 DA442_13715 PF08665 DA442_13715 DA442_13720 PF02384 N-6 DNA Methylase DA442_13730 PF13304 AAA domain DA442_13740 PF08747 Domain of unknown function (DUF1788) DA442_13745 PF08849 Putative inner membrane protein (DUF1819) DA442_13750 PF13280 DA442_13750 DA442_13760 PF00929 Exonuclease DA442_13770 PF00717 Peptidase S24-like DA442_13775 PF00817 impB/mucB/samB family DA442_13775 PF11798 IMS family HHH motif DA442_13775 PF11799 impB/mucB/samB family C-terminal domain DA442_13775 PF13438 DA442_13775 DA442_13795 PF00589 Phage integrase family DA442_13795 PF13356 Domain of unknown function (DUF4102) DA442_13805 PF07804 HipA-like C-terminal domain DA442_13805 PF13657 HipA N-terminal domain DA442_13810 PF01381 Helix-turn-helix DA442_13820 PF00583 Acetyltransferase (GNAT) family DA442_13825 PF03603 DNA polymerase III psi subunit DA442_13835 PF13527 Acetyltransferase (GNAT) domain DA442_13840 PF02036 SCP-2 sterol transfer family DA442_13845 PF00563 EAL domain DA442_13845 PF00990 GGDEF domain DA442_13845 PF08448 PAS fold DA442_13845 PF13188 PAS domain DA442_13850 PF01136 DA442_13850 DA442_13855 PF01136 DA442_13855 DA442_13860 PF01554 MatE DA442_13875 PF00013 KH domain DA442_13875 PF00575 S1 RNA binding domain DA442_13875 PF01138 3' exoribonuclease family, domain 1 DA442_13875 PF03725 3' exoribonuclease family, domain 2 DA442_13875 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DA442_13880 PF00312 Ribosomal protein S15 DA442_13885 PF01509 TruB family pseudouridylate synthase (N terminal domain) DA442_13885 PF09157 Pseudouridine synthase II TruB, C-terminal DA442_13885 PF16198 DA442_13885 DA442_13890 PF02033 Ribosome-binding factor A DA442_13895 PF00009 Elongation factor Tu GTP binding domain DA442_13895 PF04760 Translation initiation factor IF-2, N-terminal region DA442_13895 PF08364 DA442_13895 DA442_13895 PF11987 Translation-initiation factor 2 DA442_13900 PF08529 NusA N-terminal domain DA442_13900 PF13184 NusA-like KH domain DA442_13900 PF14520 Helix-hairpin-helix domain DA442_13905 PF02576 Uncharacterised BCR, YhbC family COG0779 DA442_13905 PF17384 DA442_13905 DA442_13920 PF03840 Preprotein translocase SecG subunit DA442_13930 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DA442_13930 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DA442_13930 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DA442_13930 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DA442_13935 PF00809 Pterin binding enzyme DA442_13940 PF00004 ATPase family associated with various cellular activities (AAA) DA442_13940 PF01434 Peptidase family M41 DA442_13940 PF06480 FtsH Extracellular DA442_13945 PF01728 FtsJ-like methyltransferase DA442_13950 PF01985 CRS1 / YhbY (CRM) domain DA442_13955 PF01272 Transcription elongation factor, GreA/GreB, C-term DA442_13955 PF03449 Transcription elongation factor, N-terminal DA442_13960 PF13609 Gram-negative porin DA442_13965 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family DA442_13970 PF01769 Divalent cation transporter DA442_13975 PF00579 tRNA synthetases class I (W and Y) DA442_13980 PF01551 Peptidase family M23 DA442_13980 PF08525 DA442_13980 DA442_13990 PF16576 DA442_13990 DA442_13995 PF01521 Iron-sulphur cluster biosynthesis DA442_14000 PF00202 Aminotransferase class-III DA442_14010 PF05175 Methyltransferase small domain DA442_14010 PF08468 Methyltransferase small domain N-terminal DA442_14020 PF00072 Response regulator receiver domain DA442_14020 PF00512 His Kinase A (phospho-acceptor) domain DA442_14020 PF00672 HAMP domain DA442_14020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_14020 PF13188 PAS domain DA442_14025 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DA442_14030 PF00528 Binding-protein-dependent transport system inner membrane component DA442_14035 PF00528 Binding-protein-dependent transport system inner membrane component DA442_14040 PF00005 ABC transporter DA442_14040 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DA442_14045 PF00005 ABC transporter DA442_14045 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DA442_14050 PF00759 Glycosyl hydrolase family 9 DA442_14050 PF02927 N-terminal ig-like domain of cellulase DA442_14055 PF01869 BadF/BadG/BcrA/BcrD ATPase family DA442_14060 PF00728 Glycosyl hydrolase family 20, catalytic domain DA442_14060 PF02838 Glycosyl hydrolase family 20, domain 2 DA442_14065 PF06165 Glycosyltransferase family 36 DA442_14065 PF17167 DA442_14065 DA442_14070 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DA442_14070 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DA442_14070 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DA442_14070 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DA442_14075 PF00005 ABC transporter DA442_14075 PF08402 TOBE domain DA442_14080 PF00528 Binding-protein-dependent transport system inner membrane component DA442_14085 PF13343 Bacterial extracellular solute-binding protein DA442_14090 PF00909 Ammonium Transporter Family DA442_14095 PF00543 Nitrogen regulatory protein P-II DA442_14100 PF06062 DA442_14100 DA442_14110 PF01734 Patatin-like phospholipase DA442_14110 PF07244 Surface antigen variable number repeat DA442_14115 PF00905 Penicillin binding protein transpeptidase domain DA442_14115 PF00912 Transglycosylase DA442_14115 PF14814 Bifunctional transglycosylase second domain DA442_14120 PF00270 DEAD/DEAH box helicase DA442_14120 PF00271 Helicase conserved C-terminal domain DA442_14120 PF04408 Helicase associated domain (HA2) DA442_14120 PF08482 DA442_14120 DA442_14125 PF03749 Sugar fermentation stimulation protein DA442_14130 PF01258 Prokaryotic dksA/traR C4-type zinc finger DA442_14140 PF00749 tRNA synthetases class I (E and Q), catalytic domain DA442_14150 PF01743 Poly A polymerase head domain DA442_14150 PF12626 Polymerase A arginine-rich C-terminus DA442_14150 PF12627 Probable RNA and SrmB- binding site of polymerase A DA442_14155 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DA442_14160 PF02548 Ketopantoate hydroxymethyltransferase DA442_14165 PF02569 Pantoate-beta-alanine ligase DA442_14175 PF03279 DA442_14175 DA442_14185 PF01061 DA442_14185 DA442_14190 PF00005 ABC transporter DA442_14200 PF00916 DA442_14200 DA442_14200 PF01740 STAS domain DA442_14205 PF00484 Carbonic anhydrase DA442_14210 PF00156 Phosphoribosyl transferase domain DA442_14215 PF00440 Bacterial regulatory proteins, tetR family DA442_14220 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DA442_14220 PF07992 Pyridine nucleotide-disulphide oxidoreductase DA442_14225 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DA442_14225 PF00364 Biotin-requiring enzyme DA442_14225 PF02817 e3 binding domain DA442_14230 PF00456 Transketolase, thiamine diphosphate binding domain DA442_14235 PF00392 Bacterial regulatory proteins, gntR family DA442_14235 PF07729 FCD domain DA442_14245 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain DA442_14245 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain DA442_14250 PF00114 Pilin (bacterial filament) DA442_14250 PF07963 Prokaryotic N-terminal methylation motif DA442_14255 PF00437 Type II/IV secretion system protein DA442_14255 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DA442_14260 PF00482 Type II secretion system (T2SS), protein F DA442_14265 PF01478 Type IV leader peptidase family DA442_14265 PF06750 DA442_14265 DA442_14270 PF01121 Dephospho-CoA kinase DA442_14275 PF07072 Protein of unknown function (DUF1342) DA442_14280 PF03884 Domain of unknown function (DUF329) DA442_14285 PF01245 Ribosomal protein L19 DA442_14290 PF01746 tRNA (Guanine-1)-methyltransferase DA442_14295 PF01782 RimM N-terminal domain DA442_14295 PF05239 PRC-barrel domain DA442_14300 PF00886 Ribosomal protein S16 DA442_14305 PF00448 SRP54-type protein, GTPase domain DA442_14305 PF02881 SRP54-type protein, helical bundle domain DA442_14305 PF02978 Signal peptide binding domain DA442_14310 PF01578 DA442_14310 DA442_14315 PF00571 CBS domain DA442_14315 PF01595 DA442_14315 DA442_14315 PF03471 Transporter associated domain DA442_14320 PF02664 S-Ribosylhomocysteinase (LuxS) DA442_14330 PF04262 Glutamate-cysteine ligase DA442_14335 PF00675 Insulinase (Peptidase family M16) DA442_14335 PF05193 Peptidase M16 inactive domain DA442_14340 PF09335 DA442_14340 DA442_14345 PF08240 Alcohol dehydrogenase GroES-like domain DA442_14345 PF13602 Zinc-binding dehydrogenase DA442_14350 PF03977 DA442_14350 DA442_14355 PF00364 Biotin-requiring enzyme DA442_14355 PF00682 HMGL-like DA442_14355 PF02436 Conserved carboxylase domain DA442_14360 PF04277 DA442_14360 DA442_14415 PF02599 Global regulator protein family DA442_14420 PF00696 Amino acid kinase family DA442_14425 PF01411 tRNA synthetases class II (A) DA442_14425 PF02272 DHHA1 domain DA442_14425 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DA442_14430 PF02631 RecX family DA442_14440 PF02464 Competence-damaged protein DA442_14445 PF00488 MutS domain V DA442_14445 PF01624 MutS domain I DA442_14445 PF05188 MutS domain II DA442_14445 PF05190 MutS family domain IV DA442_14445 PF05192 MutS domain III DA442_14455 PF01476 LysM domain DA442_14455 PF01551 Peptidase family M23 DA442_14460 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DA442_14465 PF01975 Survival protein SurE DA442_14470 PF01142 tRNA pseudouridine synthase D (TruD) DA442_14475 PF02542 YgbB family DA442_14480 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DA442_14485 PF04977 Septum formation initiator DA442_14490 PF00113 Enolase, C-terminal TIM barrel domain DA442_14490 PF03952 Enolase, N-terminal domain DA442_14495 PF00117 Glutamine amidotransferase class-I DA442_14495 PF06418 CTP synthase N-terminus DA442_14500 PF03819 MazG nucleotide pyrophosphohydrolase domain DA442_14505 PF02824 TGS domain DA442_14505 PF04607 Region found in RelA / SpoT proteins DA442_14505 PF13291 ACT domain DA442_14505 PF13328 HD domain DA442_14515 PF01938 TRAM domain DA442_14515 PF05958 tRNA (Uracil-5-)-methyltransferase DA442_14525 PF00072 Response regulator receiver domain DA442_14525 PF00512 His Kinase A (phospho-acceptor) domain DA442_14525 PF01627 Hpt domain DA442_14525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_14525 PF09984 DA442_14525 DA442_14530 PF01648 4'-phosphopantetheinyl transferase superfamily DA442_14535 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ DA442_14540 PF02565 Recombination protein O C terminal DA442_14540 PF11967 Recombination protein O N terminal DA442_14545 PF01926 50S ribosome-binding GTPase DA442_14545 PF07650 KH domain DA442_14550 PF00035 Double-stranded RNA binding motif DA442_14550 PF14622 Ribonuclease-III-like DA442_14555 PF00717 Peptidase S24-like DA442_14555 PF10502 Signal peptidase, peptidase S26 DA442_14560 PF00009 Elongation factor Tu GTP binding domain DA442_14560 PF00679 Elongation factor G C-terminus DA442_14560 PF03144 Elongation factor Tu domain 2 DA442_14560 PF06421 GTP-binding protein LepA C-terminus DA442_14565 PF04246 DA442_14565 DA442_14570 PF03888 MucB/RseB family DA442_14570 PF17188 DA442_14570 DA442_14575 PF03872 Anti sigma-E protein RseA, N-terminal domain DA442_14575 PF03873 Anti sigma-E protein RseA, C-terminal domain DA442_14580 PF04542 Sigma-70 region 2 DA442_14580 PF08281 Sigma-70, region 4 DA442_14590 PF00890 FAD binding domain DA442_14590 PF02910 Fumarate reductase flavoprotein C-term DA442_14600 PF03937 Flavinator of succinate dehydrogenase DA442_14605 PF01571 Aminomethyltransferase folate-binding domain DA442_14610 PF04073 Aminoacyl-tRNA editing domain DA442_14615 PF06526 Protein of unknown function (DUF1107) DA442_14620 PF01494 FAD binding domain DA442_14625 PF01494 FAD binding domain DA442_14630 PF03695 Uncharacterised protein family (UPF0149) DA442_14640 PF05164 Cell division protein ZapA DA442_14650 PF01812 5-formyltetrahydrofolate cyclo-ligase family DA442_14655 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DA442_14660 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DA442_14660 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DA442_14665 PF04402 Protein of unknown function (DUF541) DA442_14670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_14670 PF03466 LysR substrate binding domain DA442_14675 PF01810 DA442_14675 DA442_14680 PF04073 Aminoacyl-tRNA editing domain DA442_14685 PF00924 Mechanosensitive ion channel DA442_14685 PF05552 Conserved TM helix DA442_14690 PF01116 Fructose-bisphosphate aldolase class-II DA442_14695 PF00162 Phosphoglycerate kinase DA442_14700 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DA442_14700 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DA442_14705 PF00593 TonB dependent receptor DA442_14705 PF07715 TonB-dependent Receptor Plug Domain DA442_14710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_14710 PF03466 LysR substrate binding domain DA442_14715 PF00456 Transketolase, thiamine diphosphate binding domain DA442_14715 PF02779 Transketolase, pyrimidine binding domain DA442_14715 PF02780 Transketolase, C-terminal domain DA442_14725 PF00438 S-adenosylmethionine synthetase, N-terminal domain DA442_14725 PF02772 S-adenosylmethionine synthetase, central domain DA442_14725 PF02773 S-adenosylmethionine synthetase, C-terminal domain DA442_14730 PF09955 DA442_14730 DA442_14735 PF10263 DA442_14735 DA442_14735 PF17283 DA442_14735 DA442_14740 PF04231 Endonuclease I DA442_14745 PF04452 RNA methyltransferase DA442_14750 PF02951 Prokaryotic glutathione synthetase, N-terminal domain DA442_14750 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain DA442_14755 PF02622 Uncharacterized ACR, COG1678 DA442_14760 PF03652 Uncharacterised protein family (UPF0081) DA442_14765 PF00437 Type II/IV secretion system protein DA442_14770 PF00437 Type II/IV secretion system protein DA442_14775 PF01168 Alanine racemase, N-terminal domain DA442_14780 PF03807 NADP oxidoreductase coenzyme F420-dependent DA442_14780 PF14748 Pyrroline-5-carboxylate reductase dimerisation DA442_14785 PF02325 DA442_14785 DA442_14795 PF14467 Domain of unknown function (DUF4426) DA442_14800 PF01725 Ham1 family DA442_14805 PF04055 Radical SAM superfamily DA442_14805 PF06969 HemN C-terminal domain DA442_14810 PF04960 Glutaminase DA442_14820 PF02390 Putative methyltransferase DA442_14825 PF00633 Helix-hairpin-helix motif DA442_14825 PF00730 HhH-GPD superfamily base excision DNA repair protein DA442_14825 PF10576 Iron-sulfur binding domain of endonuclease III DA442_14825 PF14815 NUDIX domain DA442_14830 PF04362 Bacterial Fe(2+) trafficking DA442_14835 PF01464 Transglycosylase SLT domain DA442_14835 PF11873 Domain of unknown function (DUF3393) DA442_14875 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_14875 PF17200 DA442_14875 DA442_14905 PF00171 Aldehyde dehydrogenase family DA442_14955 PF01966 HD domain DA442_14955 PF11871 DA442_14955 DA442_14960 PF00356 Bacterial regulatory proteins, lacI family DA442_14960 PF13377 Periplasmic binding protein-like domain DA442_14965 PF04794 YdjC-like protein DA442_14970 PF02056 Family 4 glycosyl hydrolase DA442_14970 PF11975 Family 4 glycosyl hydrolase C-terminal domain DA442_14975 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit DA442_14980 PF02378 Phosphotransferase system, EIIC DA442_14990 PF01522 Polysaccharide deacetylase DA442_15005 PF00106 short chain dehydrogenase DA442_15010 PF10011 Predicted membrane protein (DUF2254) DA442_15015 PF06271 DA442_15015 DA442_15020 PF03739 DA442_15020 DA442_15025 PF03739 DA442_15025 DA442_15030 PF00883 Cytosol aminopeptidase family, catalytic domain DA442_15030 PF02789 Cytosol aminopeptidase family, N-terminal domain DA442_15035 PF04364 DNA polymerase III chi subunit, HolC DA442_15040 PF00133 tRNA synthetases class I (I, L, M and V) DA442_15040 PF08264 Anticodon-binding domain of tRNA DA442_15040 PF10458 Valyl tRNA synthetase tRNA binding arm DA442_15045 PF09834 DA442_15045 DA442_15050 PF00583 Acetyltransferase (GNAT) family DA442_15050 PF12802 MarR family DA442_15060 PF06877 Regulator of ribonuclease activity B DA442_15070 PF02274 Amidinotransferase DA442_15075 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DA442_15075 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DA442_15085 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DA442_15085 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DA442_15090 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain DA442_15090 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain DA442_15095 PF01042 Endoribonuclease L-PSP DA442_15100 PF01553 Acyltransferase DA442_15105 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DA442_15110 PF01722 BolA-like protein DA442_15115 PF13466 STAS domain DA442_15120 PF05494 Toluene tolerance, Ttg2 DA442_15125 PF02470 DA442_15125 DA442_15130 PF02405 DA442_15130 DA442_15135 PF00005 ABC transporter DA442_15140 PF01699 Sodium/calcium exchanger protein DA442_15145 PF00571 CBS domain DA442_15145 PF01380 SIS domain DA442_15150 PF06835 Lipopolysaccharide-assembly, LptC-related DA442_15155 PF03968 OstA-like protein DA442_15160 PF00005 ABC transporter DA442_15160 PF12399 Branched-chain amino acid ATP-binding cassette transporter DA442_15165 PF00309 DA442_15165 DA442_15165 PF04552 Sigma-54, DNA binding domain DA442_15165 PF04963 Sigma-54 factor, core binding domain DA442_15170 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DA442_15175 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DA442_15180 PF03668 DA442_15180 DA442_15185 PF00381 PTS HPr component phosphorylation site DA442_15190 PF00571 CBS domain DA442_15190 PF01769 Divalent cation transporter DA442_15190 PF03448 MgtE intracellular N domain DA442_15195 PF01523 Putative modulator of DNA gyrase DA442_15200 PF04751 Protein of unknown function (DUF615) DA442_15205 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DA442_15205 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DA442_15210 PF00849 RNA pseudouridylate synthase DA442_15225 PF00176 SNF2 family N-terminal domain DA442_15225 PF00271 Helicase conserved C-terminal domain DA442_15225 PF12137 RNA polymerase recycling family C-terminal DA442_15230 PF02562 PhoH-like protein DA442_15230 PF13638 PIN domain DA442_15235 PF01523 Putative modulator of DNA gyrase DA442_15240 PF00795 Carbon-nitrogen hydrolase DA442_15245 PF13116 DA442_15245 DA442_15245 PF13502 DA442_15245 DA442_15250 PF00575 S1 RNA binding domain DA442_15250 PF10150 Ribonuclease E/G family DA442_15255 PF02545 Maf-like protein DA442_15260 PF04093 DA442_15260 DA442_15265 PF04085 rod shape-determining protein MreC DA442_15270 PF06723 MreB/Mbl protein DA442_15285 PF07963 Prokaryotic N-terminal methylation motif DA442_15290 PF07963 Prokaryotic N-terminal methylation motif DA442_15295 PF07963 Prokaryotic N-terminal methylation motif DA442_15305 PF07963 Prokaryotic N-terminal methylation motif DA442_15315 PF00482 Type II secretion system (T2SS), protein F DA442_15320 PF00437 Type II/IV secretion system protein DA442_15320 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DA442_15330 PF13401 AAA domain DA442_15335 PF00263 DA442_15335 DA442_15335 PF07655 DA442_15335 DA442_15345 PF04612 Type II secretion system (T2SS), protein M DA442_15355 PF00563 EAL domain DA442_15355 PF00990 GGDEF domain DA442_15355 PF17157 DA442_15355 DA442_15360 PF00436 Single-strand binding protein family DA442_15365 PF00196 Bacterial regulatory proteins, luxR family DA442_15370 PF00483 Nucleotidyl transferase DA442_15375 PF00005 ABC transporter DA442_15380 PF04932 DA442_15380 DA442_15380 PF11846 DA442_15380 DA442_15380 PF15864 DA442_15380 DA442_15385 PF00266 Aminotransferase class-V DA442_15400 PF00809 Pterin binding enzyme DA442_15400 PF02310 B12 binding domain DA442_15400 PF02574 Homocysteine S-methyltransferase DA442_15400 PF02607 B12 binding domain DA442_15400 PF02965 Vitamin B12 dependent methionine synthase, activation domain DA442_15405 PF00999 Sodium/hydrogen exchanger family DA442_15415 PF13592 DA442_15415 DA442_15480 PF01507 Phosphoadenosine phosphosulfate reductase family DA442_15485 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DA442_15485 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DA442_15490 PF00175 Oxidoreductase NAD-binding domain DA442_15490 PF00258 Flavodoxin DA442_15490 PF00667 FAD binding domain DA442_15500 PF13505 Outer membrane protein beta-barrel domain DA442_15505 PF09583 DA442_15505 DA442_15515 PF01207 Dihydrouridine synthase (Dus) DA442_15525 PF01475 Ferric uptake regulator family DA442_15530 PF13690 Chemotaxis phosphatase CheX DA442_15535 PF00342 Phosphoglucose isomerase DA442_15540 PF01894 Uncharacterised protein family UPF0047 DA442_15545 PF01103 Surface antigen DA442_15550 PF00842 Alanine racemase, C-terminal domain DA442_15550 PF01168 Alanine racemase, N-terminal domain DA442_15555 PF00772 DnaB-like helicase N terminal domain DA442_15555 PF03796 DnaB-like helicase C terminal domain DA442_15560 PF04338 Protein of unknown function, DUF481 DA442_15565 PF01281 Ribosomal protein L9, N-terminal domain DA442_15565 PF03948 Ribosomal protein L9, C-terminal domain DA442_15570 PF01084 Ribosomal protein S18 DA442_15575 PF00436 Single-strand binding protein family DA442_15580 PF01250 Ribosomal protein S6 DA442_15585 PF00834 Ribulose-phosphate 3 epimerase family DA442_15590 PF02086 D12 class N6 adenine-specific DNA methyltransferase DA442_15595 PF05036 Sporulation related domain DA442_15595 PF13401 AAA domain DA442_15600 PF01761 3-dehydroquinate synthase DA442_15605 PF01202 Shikimate kinase DA442_15610 PF00263 DA442_15610 DA442_15610 PF03958 Bacterial type II/III secretion system short domain DA442_15615 PF04351 Pilus assembly protein, PilP DA442_15620 PF04350 Pilus assembly protein, PilO DA442_15625 PF05137 DA442_15625 DA442_15630 PF11104 Type IV pilus assembly protein PilM; DA442_15635 PF00905 Penicillin binding protein transpeptidase domain DA442_15635 PF00912 Transglycosylase DA442_15635 PF17092 DA442_15635 DA442_15645 PF00462 Glutaredoxin DA442_15645 PF08534 Redoxin DA442_15655 PF12292 DA442_15655 DA442_15660 PF00206 Lyase DA442_15660 PF00583 Acetyltransferase (GNAT) family DA442_15660 PF14698 Argininosuccinate lyase C-terminal DA442_15665 PF00764 Arginosuccinate synthase DA442_15670 PF00696 Amino acid kinase family DA442_15675 PF01118 Semialdehyde dehydrogenase, NAD binding domain DA442_15675 PF02774 Semialdehyde dehydrogenase, dimerisation domain DA442_15680 PF01546 Peptidase family M20/M25/M40 DA442_15680 PF07687 Peptidase dimerisation domain DA442_15685 PF00311 Phosphoenolpyruvate carboxylase DA442_15690 PF03551 Transcriptional regulator PadR-like family DA442_15690 PF10400 Virulence activator alpha C-term DA442_15695 PF02219 Methylenetetrahydrofolate reductase DA442_15700 PF00696 Amino acid kinase family DA442_15700 PF00742 Homoserine dehydrogenase DA442_15700 PF03447 Homoserine dehydrogenase, NAD binding domain DA442_15705 PF01053 Cys/Met metabolism PLP-dependent enzyme DA442_15715 PF00390 Malic enzyme, N-terminal domain DA442_15715 PF03949 Malic enzyme, NAD binding domain DA442_15720 PF00210 Ferritin-like domain DA442_15725 PF04324 BFD-like [2Fe-2S] binding domain DA442_15730 PF00009 Elongation factor Tu GTP binding domain DA442_15730 PF03143 Elongation factor Tu C-terminal domain DA442_15730 PF03144 Elongation factor Tu domain 2 DA442_15735 PF00009 Elongation factor Tu GTP binding domain DA442_15735 PF00679 Elongation factor G C-terminus DA442_15735 PF03144 Elongation factor Tu domain 2 DA442_15735 PF03764 Elongation factor G, domain IV DA442_15735 PF14492 Elongation Factor G, domain II DA442_15740 PF00177 Ribosomal protein S7p/S5e DA442_15745 PF00164 Ribosomal protein S12/S23 DA442_15750 PF04077 DsrH like protein DA442_15755 PF02635 DsrE/DsrF-like family DA442_15760 PF02635 DsrE/DsrF-like family DA442_15765 PF08348 DA442_15765 DA442_15765 PF13309 DA442_15765 DA442_15770 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DA442_15770 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DA442_15775 PF13360 PQQ-like domain DA442_15780 PF04102 SlyX DA442_15785 PF01112 Asparaginase DA442_15795 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DA442_15800 PF09526 DA442_15800 DA442_15805 PF00999 Sodium/hydrogen exchanger family DA442_15805 PF02254 TrkA-N domain DA442_15810 PF02525 Flavodoxin-like fold DA442_15820 PF00005 ABC transporter DA442_15820 PF12848 ABC transporter DA442_15825 PF09523 DA442_15825 DA442_15830 PF00561 alpha/beta hydrolase fold DA442_15840 PF00485 Phosphoribulokinase / Uridine kinase family DA442_15845 PF00027 Cyclic nucleotide-binding domain DA442_15845 PF00325 Bacterial regulatory proteins, crp family DA442_15850 PF07063 Domain of unknown function (DUF1338) DA442_15855 PF00171 Aldehyde dehydrogenase family DA442_15860 PF04958 Arginine N-succinyltransferase beta subunit DA442_15865 PF00202 Aminotransferase class-III DA442_15870 PF00117 Glutamine amidotransferase class-I DA442_15875 PF00932 Lamin Tail Domain DA442_15875 PF03372 Endonuclease/Exonuclease/phosphatase family DA442_15900 PF00579 tRNA synthetases class I (W and Y) DA442_15905 PF13419 Haloacid dehalogenase-like hydrolase DA442_15910 PF00588 SpoU rRNA Methylase family DA442_15910 PF08032 RNA 2'-O ribose methyltransferase substrate binding DA442_15915 PF00575 S1 RNA binding domain DA442_15915 PF00773 RNB domain DA442_15915 PF08206 Ribonuclease B OB domain DA442_15915 PF08461 Ribonuclease R winged-helix domain DA442_15920 PF02082 Transcriptional regulator DA442_15925 PF00042 Globin DA442_15925 PF00175 Oxidoreductase NAD-binding domain DA442_15925 PF00970 Oxidoreductase FAD-binding domain DA442_15930 PF08238 Sel1 repeat DA442_15940 PF00709 Adenylosuccinate synthetase DA442_15945 PF09838 DA442_15945 DA442_15950 PF01145 SPFH domain / Band 7 family DA442_15955 PF01145 SPFH domain / Band 7 family DA442_15955 PF12221 DA442_15955 DA442_15960 PF01926 50S ribosome-binding GTPase DA442_15960 PF13167 DA442_15960 DA442_15960 PF16360 DA442_15960 DA442_15965 PF17209 DA442_15965 DA442_15970 PF01715 IPP transferase DA442_15975 PF01119 DNA mismatch repair protein, C-terminal domain DA442_15975 PF08676 MutL C terminal dimerisation domain DA442_15975 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_15980 PF01476 LysM domain DA442_15980 PF01520 N-acetylmuramoyl-L-alanine amidase DA442_15980 PF11741 AMIN domain DA442_15985 PF02367 Uncharacterised P-loop hydrolase UPF0079 DA442_15990 PF08331 DA442_15990 DA442_15990 PF13484 DA442_15990 DA442_16060 PF00929 Exonuclease DA442_16065 PF03193 Protein of unknown function, DUF258 DA442_16070 PF02666 DA442_16070 DA442_16075 PF00939 Sodium:sulfate symporter transmembrane region DA442_16080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_16080 PF00672 HAMP domain DA442_16080 PF02743 Cache domain DA442_16085 PF00892 EamA-like transporter family DA442_16090 PF01676 Metalloenzyme superfamily DA442_16090 PF06415 BPG-independent PGAM N-terminus (iPGM_N) DA442_16095 PF00581 Rhodanese-like domain DA442_16100 PF02556 Preprotein translocase subunit SecB DA442_16105 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DA442_16105 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DA442_16110 PF00132 Bacterial transferase hexapeptide (six repeats) DA442_16110 PF06426 Serine acetyltransferase, N-terminal DA442_16115 PF01551 Peptidase family M23 DA442_16125 PF00440 Bacterial regulatory proteins, tetR family DA442_16125 PF13972 Bacterial transcriptional repressor DA442_16130 PF04892 DA442_16130 DA442_16135 PF00152 tRNA synthetases class II (D, K and N) DA442_16145 PF00890 FAD binding domain DA442_16145 PF02910 Fumarate reductase flavoprotein C-term DA442_16150 PF13085 2Fe-2S iron-sulfur cluster binding domain DA442_16150 PF13183 4Fe-4S dicluster domain DA442_16155 PF02300 Fumarate reductase subunit C DA442_16160 PF02313 Fumarate reductase subunit D DA442_16165 PF01145 SPFH domain / Band 7 family DA442_16170 PF01132 Elongation factor P (EF-P) OB domain DA442_16170 PF08207 Elongation factor P (EF-P) KOW-like domain DA442_16170 PF09285 Elongation factor P, C-terminal DA442_16175 PF04055 Radical SAM superfamily DA442_16175 PF13353 4Fe-4S single cluster domain DA442_16185 PF00842 Alanine racemase, C-terminal domain DA442_16185 PF01168 Alanine racemase, N-terminal domain DA442_16195 PF02308 DA442_16195 DA442_16205 PF00118 TCP-1/cpn60 chaperonin family DA442_16215 PF01554 MatE DA442_16220 PF00365 Phosphofructokinase DA442_16225 PF01545 Cation efflux family DA442_16225 PF16916 DA442_16225 DA442_16230 PF07813 LTXXQ motif family protein DA442_16240 PF00072 Response regulator receiver domain DA442_16240 PF00486 Transcriptional regulatory protein, C terminal DA442_16245 PF00512 His Kinase A (phospho-acceptor) domain DA442_16245 PF00672 HAMP domain DA442_16245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_16245 PF16527 DA442_16245 DA442_16250 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DA442_16250 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DA442_16255 PF00588 SpoU rRNA Methylase family DA442_16260 PF04186 DA442_16260 DA442_16265 PF00206 Lyase DA442_16265 PF10415 Fumarase C C-terminus DA442_16270 PF03605 DA442_16270 DA442_16275 PF02683 DA442_16275 DA442_16275 PF11412 Disulphide bond corrector protein DsbC DA442_16275 PF13899 Thioredoxin-like DA442_16280 PF00072 Response regulator receiver domain DA442_16280 PF00196 Bacterial regulatory proteins, luxR family DA442_16285 PF00999 Sodium/hydrogen exchanger family DA442_16285 PF02080 TrkA-C domain DA442_16285 PF03471 Transporter associated domain DA442_16290 PF13937 DA442_16290 DA442_16295 PF00474 Sodium:solute symporter family DA442_16315 PF00206 Lyase DA442_16315 PF10415 Fumarase C C-terminus DA442_16320 PF00072 Response regulator receiver domain DA442_16320 PF00512 His Kinase A (phospho-acceptor) domain DA442_16320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_16320 PF12860 DA442_16320 DA442_16325 PF12832 MFS_1 like family DA442_16330 PF00027 Cyclic nucleotide-binding domain DA442_16330 PF03445 DA442_16330 DA442_16330 PF10335 DA442_16330 DA442_16335 PF00929 Exonuclease DA442_16340 PF00501 AMP-binding enzyme DA442_16340 PF13193 AMP-binding enzyme C-terminal domain DA442_16340 PF16177 DA442_16340 DA442_16345 PF01220 Dehydroquinase class II DA442_16350 PF00364 Biotin-requiring enzyme DA442_16355 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain DA442_16355 PF02785 Biotin carboxylase C-terminal domain DA442_16355 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DA442_16365 PF06325 Ribosomal protein L11 methyltransferase (PrmA) DA442_16370 PF01207 Dihydrouridine synthase (Dus) DA442_16375 PF02954 Bacterial regulatory protein, Fis family DA442_16385 PF00005 ABC transporter DA442_16385 PF12848 ABC transporter DA442_16390 PF00990 GGDEF domain DA442_16465 PF01276 Orn/Lys/Arg decarboxylase, major domain DA442_16465 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain DA442_16465 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DA442_16470 PF13520 Amino acid permease DA442_16480 PF00486 Transcriptional regulatory protein, C terminal DA442_16485 PF13411 MerR HTH family regulatory protein DA442_16495 PF01808 AICARFT/IMPCHase bienzyme DA442_16495 PF02142 MGS-like domain DA442_16505 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DA442_16505 PF02843 Phosphoribosylglycinamide synthetase, C domain DA442_16505 PF02844 Phosphoribosylglycinamide synthetase, N domain DA442_16510 PF07356 DA442_16510 DA442_16515 PF00216 Bacterial DNA-binding protein DA442_16520 PF00571 CBS domain DA442_16520 PF01595 DA442_16520 DA442_16525 PF04222 Protein of unknown function (DUF416) DA442_16530 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DA442_16535 PF03167 Uracil DNA glycosylase superfamily DA442_16540 PF01208 Uroporphyrinogen decarboxylase (URO-D) DA442_16555 PF00293 NUDIX domain DA442_16555 PF09297 NADH pyrophosphatase zinc ribbon domain DA442_16560 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ DA442_16565 PF00623 RNA polymerase Rpb1, domain 2 DA442_16565 PF04983 RNA polymerase Rpb1, domain 3 DA442_16565 PF04997 RNA polymerase Rpb1, domain 1 DA442_16565 PF04998 RNA polymerase Rpb1, domain 5 DA442_16565 PF05000 RNA polymerase Rpb1, domain 4 DA442_16570 PF00562 RNA polymerase Rpb2, domain 6 DA442_16570 PF04560 RNA polymerase Rpb2, domain 7 DA442_16570 PF04561 RNA polymerase Rpb2, domain 2 DA442_16570 PF04563 RNA polymerase beta subunit DA442_16570 PF04565 RNA polymerase Rpb2, domain 3 DA442_16570 PF10385 RNA polymerase beta subunit external 1 domain DA442_16575 PF00542 Ribosomal protein L7/L12 C-terminal domain DA442_16575 PF16320 DA442_16575 DA442_16580 PF00466 Ribosomal protein L10 DA442_16585 PF00687 Ribosomal protein L1p/L10e family DA442_16590 PF00298 Ribosomal protein L11, RNA binding domain DA442_16590 PF03946 Ribosomal protein L11, N-terminal domain DA442_16595 PF00467 KOW motif DA442_16595 PF02357 Transcription termination factor nusG DA442_16600 PF00584 SecE/Sec61-gamma subunits of protein translocation complex DA442_16610 PF00009 Elongation factor Tu GTP binding domain DA442_16610 PF03143 Elongation factor Tu C-terminal domain DA442_16610 PF03144 Elongation factor Tu domain 2 DA442_16635 PF00485 Phosphoribulokinase / Uridine kinase family DA442_16640 PF02237 Biotin protein ligase C terminal domain DA442_16640 PF03099 Biotin/lipoate A/B protein ligase family DA442_16640 PF08279 HTH domain DA442_16645 PF01565 FAD binding domain DA442_16645 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DA442_16650 PF13673 Acetyltransferase (GNAT) domain DA442_16655 PF13091 PLD-like domain DA442_16710 PF00076 RNA recognition motif DA442_16715 PF01177 Asp/Glu/Hydantoin racemase DA442_16720 PF01902 ATP-binding region DA442_16725 PF00593 TonB dependent receptor DA442_16725 PF07715 TonB-dependent Receptor Plug Domain DA442_16730 PF05958 tRNA (Uracil-5-)-methyltransferase DA442_16735 PF07226 DA442_16735 DA442_16740 PF00440 Bacterial regulatory proteins, tetR family DA442_16745 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DA442_16745 PF07992 Pyridine nucleotide-disulphide oxidoreductase DA442_16750 PF01554 MatE DA442_16755 PF04072 Leucine carboxyl methyltransferase DA442_16760 PF00717 Peptidase S24-like DA442_16760 PF01726 LexA DNA binding domain DA442_16770 PF01553 Acyltransferase DA442_16775 PF01040 UbiA prenyltransferase family DA442_16780 PF04345 Chorismate lyase DA442_16785 PF03748 DA442_16785 DA442_16790 PF01694 Rhomboid family DA442_16790 PF12122 Protein of unknown function (DUF3582) DA442_16795 PF00581 Rhodanese-like domain DA442_16805 PF00140 Sigma-70 factor, region 1 DA442_16805 PF04542 Sigma-70 region 2 DA442_16805 PF04545 Sigma-70, region 4 DA442_16815 PF00005 ABC transporter DA442_16820 PF00448 SRP54-type protein, GTPase domain DA442_16820 PF02881 SRP54-type protein, helical bundle domain DA442_16825 PF03602 Conserved hypothetical protein 95 DA442_16830 PF06611 DA442_16830 DA442_16835 PF01914 DA442_16835 DA442_16840 PF10678 DA442_16840 DA442_16845 PF07947 DA442_16845 DA442_16865 PF10694 Protein of unknown function (DUF2500) DA442_16870 PF01757 DA442_16870 DA442_16875 PF00031 Cystatin domain DA442_16880 PF07690 Major Facilitator Superfamily DA442_16885 PF05706 Cyclin-dependent kinase inhibitor 3 (CDKN3) DA442_16890 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DA442_16890 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DA442_16895 PF01022 Bacterial regulatory protein, arsR family DA442_16900 PF00563 EAL domain DA442_16900 PF08668 HDOD domain DA442_16905 PF01810 DA442_16905 DA442_16910 PF12146 Putative lysophospholipase DA442_16920 PF08282 haloacid dehalogenase-like hydrolase DA442_16925 PF01878 EVE domain DA442_16935 PF03942 DA442_16935 DA442_16940 PF00563 EAL domain DA442_16940 PF00990 GGDEF domain DA442_16940 PF08495 DA442_16940 DA442_16940 PF10442 DA442_16940 DA442_16945 PF13419 Haloacid dehalogenase-like hydrolase DA442_16950 PF00589 Phage integrase family DA442_16950 PF02899 Phage integrase, N-terminal SAM-like domain DA442_16955 PF04340 Protein of unknown function, DUF484 DA442_16960 PF01678 Diaminopimelate epimerase DA442_16965 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DA442_16965 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DA442_16970 PF13627 DA442_16970 DA442_16975 PF01491 Frataxin-like domain DA442_16980 PF01295 DA442_16980 DA442_16980 PF12633 DA442_16980 DA442_16985 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain DA442_16985 PF03900 Porphobilinogen deaminase, C-terminal domain DA442_16990 PF02602 Uroporphyrinogen-III synthase HemD DA442_16995 PF04375 DA442_16995 DA442_17000 PF07219 DA442_17000 DA442_17050 PF00175 Oxidoreductase NAD-binding domain DA442_17050 PF00970 Oxidoreductase FAD-binding domain DA442_17055 PF00111 2Fe-2S iron-sulfur cluster binding domain DA442_17060 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DA442_17075 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DA442_17075 PF07497 Rho termination factor, RNA-binding domain DA442_17075 PF07498 Rho termination factor, N-terminal domain DA442_17080 PF00085 Thioredoxin DA442_17085 PF00270 DEAD/DEAH box helicase DA442_17085 PF00271 Helicase conserved C-terminal domain DA442_17090 PF02541 Ppx/GppA phosphatase family DA442_17095 PF02592 DA442_17095 DA442_17105 PF12305 DA442_17105 DA442_17110 PF00270 DEAD/DEAH box helicase DA442_17110 PF00271 Helicase conserved C-terminal domain DA442_17110 PF00570 HRDC domain DA442_17110 PF09382 RQC domain DA442_17110 PF16124 DA442_17110 DA442_17115 PF00892 EamA-like transporter family DA442_17120 PF02311 AraC-like ligand binding domain DA442_17120 PF12833 Helix-turn-helix domain DA442_17125 PF01810 DA442_17125 DA442_17130 PF01019 Gamma-glutamyltranspeptidase DA442_17140 PF00580 UvrD/REP helicase N-terminal domain DA442_17140 PF13361 UvrD-like helicase C-terminal domain DA442_17145 PF10048 DA442_17145 DA442_17150 PF05114 Protein of unknown function (DUF692) DA442_17155 PF09836 Uncharacterized protein conserved in bacteria (DUF2063) DA442_17160 PF07681 DA442_17160 DA442_17170 PF07690 Major Facilitator Superfamily DA442_17175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_17175 PF03466 LysR substrate binding domain DA442_17180 PF00557 Metallopeptidase family M24 DA442_17180 PF01321 Creatinase/Prolidase N-terminal domain DA442_17180 PF16188 DA442_17180 DA442_17180 PF16189 DA442_17180 DA442_17185 PF04055 Radical SAM superfamily DA442_17185 PF06968 Biotin and Thiamin Synthesis associated domain DA442_17190 PF05690 Thiazole biosynthesis protein ThiG DA442_17195 PF02597 ThiS family DA442_17200 PF00899 ThiF family DA442_17205 PF02581 Thiamine monophosphate synthase/TENI DA442_17210 PF01964 ThiC family DA442_17210 PF13667 ThiC-associated domain DA442_17215 PF02537 DA442_17215 DA442_17270 PF00132 Bacterial transferase hexapeptide (six repeats) DA442_17275 PF07369 Protein of unknown function (DUF1488) DA442_17280 PF01488 Shikimate / quinate 5-dehydrogenase DA442_17280 PF08501 Shikimate dehydrogenase substrate binding domain DA442_17285 PF01218 Coproporphyrinogen III oxidase DA442_17290 PF01300 Telomere recombination DA442_17295 PF00731 AIR carboxylase DA442_17300 PF02222 ATP-grasp domain DA442_17305 PF01396 DA442_17305 DA442_17310 PF04361 DA442_17310 DA442_17315 PF02481 DNA recombination-mediator protein A DA442_17320 PF01476 LysM domain DA442_17325 PF01327 Polypeptide deformylase DA442_17330 PF00551 Formyl transferase DA442_17330 PF02911 Formyl transferase, C-terminal domain DA442_17335 PF01029 NusB family DA442_17335 PF01189 NOL1/NOP2/sun family DA442_17340 PF02080 TrkA-C domain DA442_17340 PF02254 TrkA-N domain DA442_17345 PF02386 Cation transport protein DA442_17350 PF11355 DA442_17350 DA442_17355 PF03006 DA442_17355 DA442_17360 PF07070 DA442_17360 DA442_17370 PF06288 Protein of unknown function (DUF1040) DA442_17375 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase DA442_17375 PF12801 DA442_17375 DA442_17375 PF13746 4Fe-4S dicluster domain DA442_17380 PF01636 Phosphotransferase enzyme family DA442_17385 PF01323 DSBA-like thioredoxin domain DA442_17390 PF01553 Acyltransferase DA442_17395 PF11059 DA442_17395 DA442_17400 PF01078 Magnesium chelatase, subunit ChlI DA442_17400 PF13335 DA442_17400 DA442_17400 PF13541 Subunit ChlI of Mg-chelatase DA442_17405 PF00205 Thiamine pyrophosphate enzyme, central domain DA442_17405 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DA442_17405 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DA442_17410 PF13710 ACT domain DA442_17415 PF01063 Aminotransferase class IV DA442_17420 PF00920 Dehydratase family DA442_17425 PF00291 Pyridoxal-phosphate dependent enzyme DA442_17425 PF00585 C-terminal regulatory domain of Threonine dehydratase DA442_17430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_17430 PF03466 LysR substrate binding domain DA442_17435 PF07690 Major Facilitator Superfamily DA442_17445 PF00528 Binding-protein-dependent transport system inner membrane component DA442_17450 PF00132 Bacterial transferase hexapeptide (six repeats) DA442_17450 PF12804 MobA-like NTP transferase domain DA442_17455 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain DA442_17455 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DA442_17460 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DA442_17460 PF02874 ATP synthase alpha/beta family, beta-barrel domain DA442_17465 PF00231 ATP synthase DA442_17470 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DA442_17470 PF00306 ATP synthase alpha/beta chain, C terminal domain DA442_17470 PF02874 ATP synthase alpha/beta family, beta-barrel domain DA442_17475 PF00213 ATP synthase delta (OSCP) subunit DA442_17480 PF00430 ATP synthase B/B' CF(0) DA442_17485 PF00137 ATP synthase subunit C DA442_17490 PF00119 ATP synthase A chain DA442_17495 PF03899 DA442_17495 DA442_17500 PF02195 ParB-like nuclease domain DA442_17505 PF13614 AAA domain DA442_17510 PF02527 rRNA small subunit methyltransferase G DA442_17515 PF01134 Glucose inhibited division protein A DA442_17515 PF13932 GidA associated domain 3 DA442_17520 PF00258 Flavodoxin DA442_17535 PF12844 Helix-turn-helix domain DA442_17550 PF02661 Fic/DOC family DA442_17560 PF01420 Type I restriction modification DNA specificity domain DA442_17565 PF02384 N-6 DNA Methylase DA442_17570 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) DA442_17570 PF04851 Type III restriction enzyme, res subunit DA442_17575 PF13443 Cro/C1-type HTH DNA-binding domain DA442_17580 PF05930 Prophage CP4-57 regulatory protein (AlpA) DA442_17585 PF06048 DA442_17585 DA442_17590 PF12728 Helix-turn-helix domain DA442_17595 PF00589 Phage integrase family DA442_17595 PF13102 Phage integrase SAM-like domain DA442_17595 PF17293 DA442_17595 DA442_17600 PF01926 50S ribosome-binding GTPase DA442_17600 PF10396 GTP-binding protein TrmE N-terminus DA442_17600 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE DA442_17605 PF02096 60Kd inner membrane protein DA442_17605 PF14849 YidC periplasmic domain DA442_17610 PF01809 DA442_17610 DA442_17615 PF00825 Ribonuclease P DA442_17620 PF00468 Ribosomal protein L34 DA442_17625 PF00005 ABC transporter DA442_17630 PF00528 Binding-protein-dependent transport system inner membrane component DA442_17635 PF00497 Bacterial extracellular solute-binding proteins, family 3 DA442_17655 PF07152 YaeQ protein DA442_17660 PF00313 'Cold-shock' DNA-binding domain DA442_17665 PF03889 DA442_17665 DA442_17680 PF00497 Bacterial extracellular solute-binding proteins, family 3 DA442_17680 PF00990 GGDEF domain DA442_17685 PF17131 DA442_17685 DA442_17690 PF02687 DA442_17690 DA442_17690 PF12704 MacB-like periplasmic core domain DA442_17695 PF02687 DA442_17695 DA442_17695 PF12704 MacB-like periplasmic core domain DA442_17700 PF00005 ABC transporter DA442_17710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_17710 PF00672 HAMP domain DA442_17710 PF12729 DA442_17710 DA442_17715 PF00210 Ferritin-like domain DA442_17720 PF13419 Haloacid dehalogenase-like hydrolase DA442_17725 PF07995 Glucose / Sorbosone dehydrogenase DA442_17730 PF00465 Iron-containing alcohol dehydrogenase DA442_17745 PF00892 EamA-like transporter family DA442_17755 PF01545 Cation efflux family DA442_17760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_17760 PF03466 LysR substrate binding domain DA442_17765 PF13489 Methyltransferase domain DA442_17770 PF00501 AMP-binding enzyme DA442_17775 PF00351 Biopterin-dependent aromatic amino acid hydroxylase DA442_17780 PF01329 Pterin 4 alpha carbinolamine dehydratase DA442_17795 PF08888 HopJ type III effector protein DA442_17800 PF06945 DA442_17800 DA442_17800 PF14375 DA442_17800 DA442_17805 PF12843 DA442_17805 DA442_17810 PF00270 DEAD/DEAH box helicase DA442_17810 PF00271 Helicase conserved C-terminal domain DA442_17815 PF09905 Uncharacterized conserved protein (DUF2132) DA442_17820 PF00291 Pyridoxal-phosphate dependent enzyme DA442_17830 PF01470 Pyroglutamyl peptidase DA442_17840 PF02492 CobW/HypB/UreG, nucleotide-binding domain DA442_17845 PF00270 DEAD/DEAH box helicase DA442_17845 PF00271 Helicase conserved C-terminal domain DA442_17855 PF00491 Arginase family DA442_17860 PF01614 Bacterial transcriptional regulator DA442_17860 PF08279 HTH domain DA442_17865 PF00563 EAL domain DA442_17865 PF12792 DA442_17865 DA442_17870 PF00005 ABC transporter DA442_17875 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_17875 PF08447 PAS fold DA442_17890 PF01575 MaoC like domain DA442_17895 PF12727 PBP superfamily domain DA442_17900 PF11225 DA442_17900 DA442_17905 PF12833 Helix-turn-helix domain DA442_17910 PF00575 S1 RNA binding domain DA442_17910 PF00773 RNB domain DA442_17910 PF08206 Ribonuclease B OB domain DA442_17915 PF00270 DEAD/DEAH box helicase DA442_17915 PF00271 Helicase conserved C-terminal domain DA442_17915 PF03880 DbpA RNA binding domain DA442_17920 PF00563 EAL domain DA442_17920 PF00990 GGDEF domain DA442_17930 PF00871 Acetokinase family DA442_17940 PF00892 EamA-like transporter family DA442_17950 PF00682 HMGL-like DA442_17955 PF00378 Enoyl-CoA hydratase/isomerase family DA442_17960 PF01039 Carboxyl transferase domain DA442_17965 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DA442_17965 PF02770 Acyl-CoA dehydrogenase, middle domain DA442_17965 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DA442_17970 PF13411 MerR HTH family regulatory protein DA442_17975 PF00108 Thiolase, N-terminal domain DA442_17975 PF02803 Thiolase, C-terminal domain DA442_17980 PF00171 Aldehyde dehydrogenase family DA442_17985 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DA442_17985 PF02770 Acyl-CoA dehydrogenase, middle domain DA442_17985 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DA442_17990 PF00378 Enoyl-CoA hydratase/isomerase family DA442_17995 PF16113 DA442_17995 DA442_18000 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DA442_18000 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DA442_18005 PF13561 Enoyl-(Acyl carrier protein) reductase DA442_18010 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DA442_18010 PF06481 COX Aromatic Rich Motif DA442_18015 PF00115 Cytochrome C and Quinol oxidase polypeptide I DA442_18020 PF00510 Cytochrome c oxidase subunit III DA442_18025 PF03626 DA442_18025 DA442_18030 PF01040 UbiA prenyltransferase family DA442_18035 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DA442_18040 PF01565 FAD binding domain DA442_18040 PF08031 Berberine and berberine like DA442_18045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_18045 PF03466 LysR substrate binding domain DA442_18050 PF06742 Protein of unknown function (DUF1214) DA442_18050 PF06863 Protein of unknown function (DUF1254) DA442_18055 PF06863 Protein of unknown function (DUF1254) DA442_18060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_18060 PF03466 LysR substrate binding domain DA442_18065 PF00005 ABC transporter DA442_18070 PF00497 Bacterial extracellular solute-binding proteins, family 3 DA442_18075 PF00528 Binding-protein-dependent transport system inner membrane component DA442_18080 PF00528 Binding-protein-dependent transport system inner membrane component DA442_18085 PF00775 Dioxygenase DA442_18090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_18090 PF03466 LysR substrate binding domain DA442_18095 PF13417 Glutathione S-transferase, N-terminal domain DA442_18100 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase DA442_18100 PF13450 NAD(P)-binding Rossmann-like domain DA442_18105 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DA442_18105 PF00364 Biotin-requiring enzyme DA442_18105 PF02817 e3 binding domain DA442_18110 PF02779 Transketolase, pyrimidine binding domain DA442_18110 PF02780 Transketolase, C-terminal domain DA442_18115 PF00676 Dehydrogenase E1 component DA442_18120 PF08883 Dopa 4,5-dioxygenase family DA442_18130 PF00012 Hsp70 protein DA442_18135 PF04314 Protein of unknown function (DUF461) DA442_18155 PF00027 Cyclic nucleotide-binding domain DA442_18160 PF01497 Periplasmic binding protein DA442_18165 PF01032 FecCD transport family DA442_18170 PF01032 FecCD transport family DA442_18175 PF00005 ABC transporter DA442_18180 PF13411 MerR HTH family regulatory protein DA442_18190 PF12833 Helix-turn-helix domain DA442_18195 PF00593 TonB dependent receptor DA442_18195 PF07715 TonB-dependent Receptor Plug Domain DA442_18200 PF09981 Uncharacterized protein conserved in bacteria (DUF2218) DA442_18205 PF10688 DA442_18205 DA442_18230 PF12805 DA442_18230 DA442_18230 PF13515 DA442_18230 DA442_18235 PF00580 UvrD/REP helicase N-terminal domain DA442_18235 PF12462 DA442_18235 DA442_18235 PF13361 UvrD-like helicase C-terminal domain DA442_18240 PF02142 MGS-like domain DA442_18245 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DA442_18260 PF06934 DA442_18260 DA442_18265 PF00486 Transcriptional regulatory protein, C terminal DA442_18270 PF00884 Sulfatase DA442_18275 PF00884 Sulfatase DA442_18275 PF14707 C-terminal region of aryl-sulfatase DA442_18280 PF13414 TPR repeat DA442_18280 PF13432 Tetratricopeptide repeat DA442_18280 PF13435 Cytochrome c554 and c-prime DA442_18285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_18285 PF03466 LysR substrate binding domain DA442_18290 PF00884 Sulfatase DA442_18290 PF14707 C-terminal region of aryl-sulfatase DA442_18295 PF04055 Radical SAM superfamily DA442_18295 PF13186 Iron-sulfur cluster-binding domain DA442_18295 PF13353 4Fe-4S single cluster domain DA442_18300 PF07726 ATPase family associated with various cellular activities (AAA) DA442_18305 PF01882 DA442_18305 DA442_18310 PF14316 DA442_18310 DA442_18315 PF00092 von Willebrand factor type A domain DA442_18325 PF13584 DA442_18325 DA442_18330 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DA442_18335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_18335 PF03466 LysR substrate binding domain DA442_18340 PF00781 Diacylglycerol kinase catalytic domain DA442_18345 PF04076 Bacterial OB fold (BOF) protein DA442_18350 PF13505 Outer membrane protein beta-barrel domain DA442_18360 PF12710 haloacid dehalogenase-like hydrolase DA442_18365 PF04055 Radical SAM superfamily DA442_18365 PF13186 Iron-sulfur cluster-binding domain DA442_18370 PF14559 Tetratricopeptide repeat DA442_18375 PF08774 VRR-NUC domain DA442_18380 PF07690 Major Facilitator Superfamily DA442_18395 PF01435 Peptidase family M48 DA442_18400 PF04011 LemA family DA442_18405 PF03606 DA442_18405 DA442_18410 PF00487 DA442_18410 DA442_18415 PF00583 Acetyltransferase (GNAT) family DA442_18420 PF13419 Haloacid dehalogenase-like hydrolase DA442_18425 PF00072 Response regulator receiver domain DA442_18425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_18430 PF00155 Aminotransferase class I and II DA442_18435 PF01926 50S ribosome-binding GTPase DA442_18440 PF00563 EAL domain DA442_18445 PF01752 Collagenase DA442_18445 PF04151 Bacterial pre-peptidase C-terminal domain DA442_18445 PF08453 Peptidase family M9 N-terminal DA442_18450 PF05547 DA442_18450 DA442_18455 PF01965 DJ-1/PfpI family DA442_18455 PF12833 Helix-turn-helix domain DA442_18460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_18465 PF01478 Type IV leader peptidase family DA442_18470 PF04964 DA442_18470 DA442_18480 PF00263 DA442_18480 DA442_18480 PF13629 DA442_18480 DA442_18490 PF13614 AAA domain DA442_18495 PF00437 Type II/IV secretion system protein DA442_18500 PF00482 Type II secretion system (T2SS), protein F DA442_18505 PF00482 Type II secretion system (T2SS), protein F DA442_18510 PF13432 Tetratricopeptide repeat DA442_18515 PF07811 DA442_18515 DA442_18520 PF16964 DA442_18520 DA442_18530 PF00691 OmpA family DA442_18540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_18540 PF03466 LysR substrate binding domain DA442_18545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_18545 PF03466 LysR substrate binding domain DA442_18555 PF00072 Response regulator receiver domain DA442_18555 PF00497 Bacterial extracellular solute-binding proteins, family 3 DA442_18555 PF00512 His Kinase A (phospho-acceptor) domain DA442_18555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_18560 PF00072 Response regulator receiver domain DA442_18560 PF00563 EAL domain DA442_18565 PF00072 Response regulator receiver domain DA442_18565 PF00196 Bacterial regulatory proteins, luxR family DA442_18570 PF00990 GGDEF domain DA442_18575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_18580 PF00072 Response regulator receiver domain DA442_18580 PF00196 Bacterial regulatory proteins, luxR family DA442_18590 PF00072 Response regulator receiver domain DA442_18590 PF14559 Tetratricopeptide repeat DA442_18605 PF00072 Response regulator receiver domain DA442_18605 PF01584 CheW-like domain DA442_18610 PF07963 Prokaryotic N-terminal methylation motif DA442_18620 PF01925 DA442_18620 DA442_18625 PF00892 EamA-like transporter family DA442_18635 PF01124 MAPEG family DA442_18640 PF01569 PAP2 superfamily DA442_18650 PF01447 Thermolysin metallopeptidase, catalytic domain DA442_18650 PF02868 Thermolysin metallopeptidase, alpha-helical domain DA442_18650 PF03413 Peptidase propeptide and YPEB domain DA442_18650 PF04151 Bacterial pre-peptidase C-terminal domain DA442_18650 PF07504 Fungalysin/Thermolysin Propeptide Motif DA442_18655 PF00893 Small Multidrug Resistance protein DA442_18660 PF00892 EamA-like transporter family DA442_18665 PF00293 NUDIX domain DA442_18670 PF00583 Acetyltransferase (GNAT) family DA442_18675 PF13302 Acetyltransferase (GNAT) domain DA442_18680 PF00171 Aldehyde dehydrogenase family DA442_18685 PF00939 Sodium:sulfate symporter transmembrane region DA442_18690 PF14501 GHKL domain DA442_18690 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain DA442_18690 PF17203 DA442_18690 DA442_18695 PF00072 Response regulator receiver domain DA442_18700 PF04073 Aminoacyl-tRNA editing domain DA442_18715 PF00141 Peroxidase DA442_18720 PF09722 DA442_18720 DA442_18725 PF08808 DA442_18725 DA442_18730 PF01757 DA442_18730 DA442_18735 PF03206 DA442_18735 DA442_18745 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DA442_18750 PF03061 Thioesterase superfamily DA442_18755 PF03819 MazG nucleotide pyrophosphohydrolase domain DA442_18760 PF00582 Universal stress protein family DA442_18765 PF01769 Divalent cation transporter DA442_18765 PF03448 MgtE intracellular N domain DA442_18770 PF13521 AAA domain DA442_18780 PF11212 DA442_18780 DA442_18785 PF07119 DA442_18785 DA442_18795 PF01327 Polypeptide deformylase DA442_18805 PF11158 DA442_18805 DA442_18815 PF02253 Phospholipase A1 DA442_18825 PF04307 DA442_18825 DA442_18835 PF00005 ABC transporter DA442_18835 PF00664 ABC transporter transmembrane region DA442_18840 PF00929 Exonuclease DA442_18845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_18845 PF03466 LysR substrate binding domain DA442_18850 PF01039 Carboxyl transferase domain DA442_18855 PF01212 Beta-eliminating lyase DA442_18860 PF16691 DA442_18860 DA442_18865 PF14317 DA442_18865 DA442_18880 PF02347 Glycine cleavage system P-protein DA442_18885 PF01597 Glycine cleavage H-protein DA442_18890 PF00464 Serine hydroxymethyltransferase DA442_18895 PF01381 Helix-turn-helix DA442_18895 PF07883 Cupin domain DA442_18900 PF01571 Aminomethyltransferase folate-binding domain DA442_18900 PF08669 Glycine cleavage T-protein C-terminal barrel domain DA442_18905 PF00440 Bacterial regulatory proteins, tetR family DA442_18910 PF13437 HlyD family secretion protein DA442_18910 PF13533 Biotin-lipoyl like DA442_18920 PF00873 AcrB/AcrD/AcrF family DA442_18925 PF13505 Outer membrane protein beta-barrel domain DA442_18930 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DA442_18935 PF00294 pfkB family carbohydrate kinase DA442_18940 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DA442_18940 PF00381 PTS HPr component phosphorylation site DA442_18945 PF00356 Bacterial regulatory proteins, lacI family DA442_18945 PF13407 Periplasmic binding protein domain DA442_18950 PF03372 Endonuclease/Exonuclease/phosphatase family DA442_18960 PF13275 S4 domain DA442_18965 PF00563 EAL domain DA442_18970 PF00528 Binding-protein-dependent transport system inner membrane component DA442_18975 PF00497 Bacterial extracellular solute-binding proteins, family 3 DA442_18980 PF00528 Binding-protein-dependent transport system inner membrane component DA442_18985 PF00005 ABC transporter DA442_18995 PF07690 Major Facilitator Superfamily DA442_19000 PF13343 Bacterial extracellular solute-binding protein DA442_19005 PF00512 His Kinase A (phospho-acceptor) domain DA442_19005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_19010 PF00072 Response regulator receiver domain DA442_19010 PF02954 Bacterial regulatory protein, Fis family DA442_19010 PF14532 Sigma-54 interaction domain DA442_19015 PF07947 DA442_19015 DA442_19020 PF00465 Iron-containing alcohol dehydrogenase DA442_19035 PF00704 Glycosyl hydrolases family 18 DA442_19035 PF06483 DA442_19035 DA442_19035 PF14600 Cellulose-binding domain DA442_19040 PF00483 Nucleotidyl transferase DA442_19045 PF01268 Formate--tetrahydrofolate ligase DA442_19050 PF00294 pfkB family carbohydrate kinase DA442_19055 PF05981 DA442_19055 DA442_19080 PF13419 Haloacid dehalogenase-like hydrolase DA442_19090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_19100 PF04336 DA442_19100 DA442_19105 PF00270 DEAD/DEAH box helicase DA442_19105 PF00271 Helicase conserved C-terminal domain DA442_19110 PF00563 EAL domain DA442_19120 PF09932 DA442_19120 DA442_19125 PF01292 Prokaryotic cytochrome b561 DA442_19130 PF04264 YceI-like domain DA442_19135 PF00571 CBS domain DA442_19135 PF01226 Formate/nitrite transporter DA442_19140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_19140 PF03466 LysR substrate binding domain DA442_19145 PF06496 DA442_19145 DA442_19150 PF11398 Protein of unknown function (DUF2813) DA442_19155 PF00149 Calcineurin-like phosphoesterase DA442_19155 PF02872 5'-nucleotidase, C-terminal domain DA442_19160 PF03741 DA442_19160 DA442_19170 PF03831 PhnA protein DA442_19170 PF08274 PhnA Zinc-Ribbon DA442_19180 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) DA442_19190 PF01435 Peptidase family M48 DA442_19195 PF03061 Thioesterase superfamily DA442_19200 PF11869 DA442_19200 DA442_19205 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DA442_19205 PF12793 DA442_19205 DA442_19215 PF03091 CutA1 divalent ion tolerance protein DA442_19220 PF09997 DA442_19220 DA442_19225 PF03171 2OG-Fe(II) oxygenase superfamily DA442_19225 PF14226 non-haem dioxygenase in morphine synthesis N-terminal DA442_19230 PF00226 DnaJ domain DA442_19230 PF12339 DA442_19230 DA442_19235 PF09818 Predicted ATPase of the ABC class DA442_19240 PF00563 EAL domain DA442_19240 PF00990 GGDEF domain DA442_19240 PF13185 GAF domain DA442_19245 PF07055 Enoyl reductase FAD binding domain DA442_19245 PF12241 Trans-2-enoyl-CoA reductase catalytic region DA442_19245 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase DA442_19250 PF13472 GDSL-like Lipase/Acylhydrolase family DA442_19255 PF00005 ABC transporter DA442_19270 PF02626 Allophanate hydrolase subunit 2 DA442_19275 PF02682 Allophanate hydrolase subunit 1 DA442_19280 PF03746 LamB/YcsF family DA442_19285 PF00672 HAMP domain DA442_19285 PF00989 PAS fold DA442_19285 PF00990 GGDEF domain DA442_19285 PF13426 PAS domain DA442_19285 PF17152 DA442_19285 DA442_19290 PF16363 DA442_19290 DA442_19300 PF00593 TonB dependent receptor DA442_19300 PF07715 TonB-dependent Receptor Plug Domain DA442_19305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_19305 PF03466 LysR substrate binding domain DA442_19310 PF00583 Acetyltransferase (GNAT) family DA442_19310 PF13380 CoA binding domain DA442_19310 PF13549 ATP-grasp domain DA442_19310 PF13607 Succinyl-CoA ligase like flavodoxin domain DA442_19315 PF05036 Sporulation related domain DA442_19320 PF01820 D-ala D-ala ligase N-terminus DA442_19320 PF07478 D-ala D-ala ligase C-terminus DA442_19325 PF11782 DA442_19325 DA442_19330 PF01253 Translation initiation factor SUI1 DA442_19335 PF12472 DA442_19335 DA442_19350 PF02486 DA442_19350 DA442_19355 PF06950 DA442_19355 DA442_19375 PF10734 DA442_19375 DA442_19380 PF05707 Zonular occludens toxin (Zot) DA442_19405 PF12472 DA442_19405 DA442_19420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_19420 PF03466 LysR substrate binding domain DA442_19435 PF03701 DA442_19435 DA442_19440 PF13729 DA442_19440 DA442_19445 PF11060 DA442_19445 DA442_19455 PF00512 His Kinase A (phospho-acceptor) domain DA442_19455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_19455 PF11884 Domain of unknown function (DUF3404) DA442_19460 PF02233 NAD(P) transhydrogenase beta subunit DA442_19470 PF10115 DA442_19470 DA442_19475 PF10719 DA442_19475 DA442_19480 PF00990 GGDEF domain DA442_19485 PF11557 DA442_19485 DA442_19490 PF00072 Response regulator receiver domain DA442_19490 PF00990 GGDEF domain DA442_19495 PF11269 Protein of unknown function (DUF3069) DA442_19500 PF00005 ABC transporter DA442_19500 PF03459 TOBE domain DA442_19505 PF00528 Binding-protein-dependent transport system inner membrane component DA442_19510 PF13531 Bacterial extracellular solute-binding protein DA442_19515 PF07685 CobB/CobQ-like glutamine amidotransferase domain DA442_19515 PF13500 AAA domain DA442_19520 PF04076 Bacterial OB fold (BOF) protein DA442_19530 PF05618 Putative ATP-dependant zinc protease DA442_19535 PF00155 Aminotransferase class I and II DA442_19540 PF02311 AraC-like ligand binding domain DA442_19540 PF12833 Helix-turn-helix domain DA442_19550 PF01554 MatE DA442_19555 PF13353 4Fe-4S single cluster domain DA442_19560 PF03477 ATP cone domain DA442_19560 PF13597 Anaerobic ribonucleoside-triphosphate reductase DA442_19565 PF03372 Endonuclease/Exonuclease/phosphatase family DA442_19570 PF16576 DA442_19570 DA442_19575 PF00873 AcrB/AcrD/AcrF family DA442_19585 PF04143 DA442_19585 DA442_19590 PF12840 Helix-turn-helix domain DA442_19600 PF00581 Rhodanese-like domain DA442_19600 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DA442_19600 PF07992 Pyridine nucleotide-disulphide oxidoreductase DA442_19605 PF00384 Molybdopterin oxidoreductase DA442_19605 PF01568 Molydopterin dinucleotide binding domain DA442_19615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_19615 PF03466 LysR substrate binding domain DA442_19620 PF02634 FdhD/NarQ family DA442_19625 PF07690 Major Facilitator Superfamily DA442_19630 PF00072 Response regulator receiver domain DA442_19630 PF00196 Bacterial regulatory proteins, luxR family DA442_19635 PF05231 DA442_19635 DA442_19635 PF07730 Histidine kinase DA442_19640 PF07690 Major Facilitator Superfamily DA442_19645 PF01238 Phosphomannose isomerase type I DA442_19650 PF00368 Hydroxymethylglutaryl-coenzyme A reductase DA442_19655 PF08811 DA442_19655 DA442_19665 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DA442_19665 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DA442_19670 PF00085 Thioredoxin DA442_19675 PF07690 Major Facilitator Superfamily DA442_19680 PF12833 Helix-turn-helix domain DA442_19685 PF01554 MatE DA442_19690 PF11756 DA442_19690 DA442_19695 PF13302 Acetyltransferase (GNAT) domain DA442_19700 PF11661 DA442_19700 DA442_19705 PF00593 TonB dependent receptor DA442_19705 PF07715 TonB-dependent Receptor Plug Domain DA442_19710 PF11575 DA442_19710 DA442_19720 PF03605 DA442_19720 DA442_19725 PF01936 NYN domain DA442_19730 PF13778 DA442_19730 DA442_19735 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DA442_19740 PF01226 Formate/nitrite transporter DA442_19745 PF13806 Rieske-like [2Fe-2S] domain DA442_19750 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DA442_19750 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DA442_19750 PF04324 BFD-like [2Fe-2S] binding domain DA442_19750 PF07992 Pyridine nucleotide-disulphide oxidoreductase DA442_19775 PF05548 DA442_19775 DA442_19775 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase DA442_19795 PF05548 DA442_19795 DA442_19795 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase DA442_19800 PF13462 Thioredoxin DA442_19805 PF05235 CHAD domain DA442_19810 PF01764 Lipase (class 3) DA442_19820 PF00128 Alpha amylase, catalytic domain DA442_19835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_19835 PF12729 DA442_19835 DA442_19840 PF00842 Alanine racemase, C-terminal domain DA442_19840 PF01168 Alanine racemase, N-terminal domain DA442_19850 PF03591 DA442_19850 DA442_19855 PF05437 DA442_19855 DA442_19860 PF01565 FAD binding domain DA442_19860 PF09330 D-lactate dehydrogenase, membrane binding DA442_19865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_19865 PF03466 LysR substrate binding domain DA442_19885 PF05762 VWA domain containing CoxE-like protein DA442_19890 PF07728 AAA domain (dynein-related subfamily) DA442_19890 PF12592 Protein of unknown function (DUF3763) DA442_19895 PF00293 NUDIX domain DA442_19900 PF01212 Beta-eliminating lyase DA442_19905 PF00034 Cytochrome c DA442_19915 PF03606 DA442_19915 DA442_19920 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family DA442_19925 PF07690 Major Facilitator Superfamily DA442_19930 PF02311 AraC-like ligand binding domain DA442_19930 PF12833 Helix-turn-helix domain DA442_19935 PF08212 Lipocalin-like domain DA442_19940 PF00300 Histidine phosphatase superfamily (branch 1) DA442_19945 PF13671 AAA domain DA442_19950 PF00031 Cystatin domain DA442_19960 PF00149 Calcineurin-like phosphoesterase DA442_19960 PF12320 Type 5 capsule protein repressor C-terminal domain DA442_19970 PF05488 PAAR motif DA442_19975 PF05954 Phage late control gene D protein (GPD) DA442_19980 PF05638 Protein of unknown function (DUF796) DA442_19985 PF00004 ATPase family associated with various cellular activities (AAA) DA442_19985 PF02861 Clp amino terminal domain DA442_19985 PF07724 AAA domain (Cdc48 subfamily) DA442_19985 PF10431 C-terminal, D2-small domain, of ClpB protein DA442_19990 PF06996 DA442_19990 DA442_19995 PF05947 DA442_19995 DA442_20005 PF07024 ImpE protein DA442_20010 PF05943 DA442_20010 DA442_20015 PF05943 DA442_20015 DA442_20020 PF05591 DA442_20020 DA442_20030 PF13672 Protein phosphatase 2C DA442_20035 PF09867 Uncharacterized protein conserved in bacteria (DUF2094) DA442_20040 PF06744 DA442_20040 DA442_20040 PF06761 DA442_20040 DA442_20040 PF14331 DA442_20040 DA442_20045 PF00691 OmpA family DA442_20045 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) DA442_20050 PF05936 DA442_20050 DA442_20055 PF12790 Type VI secretion lipoprotein DA442_20060 PF00498 FHA domain DA442_20065 PF00069 Protein kinase domain DA442_20085 PF13581 Histidine kinase-like ATPase domain DA442_20090 PF00072 Response regulator receiver domain DA442_20090 PF07228 Stage II sporulation protein E (SpoIIE) DA442_20100 PF00043 Glutathione S-transferase, C-terminal domain DA442_20100 PF13417 Glutathione S-transferase, N-terminal domain DA442_20105 PF00440 Bacterial regulatory proteins, tetR family DA442_20110 PF03479 Domain of unknown function (DUF296) DA442_20115 PF13806 Rieske-like [2Fe-2S] domain DA442_20125 PF00005 ABC transporter DA442_20135 PF13379 NMT1-like family DA442_20145 PF03861 ANTAR domain DA442_20150 PF01738 Dienelactone hydrolase family DA442_20160 PF00591 Glycosyl transferase family, a/b domain DA442_20160 PF02885 Glycosyl transferase family, helical bundle domain DA442_20165 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DA442_20170 PF00384 Molybdopterin oxidoreductase DA442_20170 PF01568 Molydopterin dinucleotide binding domain DA442_20170 PF04324 BFD-like [2Fe-2S] binding domain DA442_20170 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DA442_20175 PF00583 Acetyltransferase (GNAT) family DA442_20180 PF03222 Tryptophan/tyrosine permease family DA442_20190 PF00990 GGDEF domain DA442_20190 PF13424 Tetratricopeptide repeat DA442_20200 PF00082 Subtilase family DA442_20200 PF01483 Proprotein convertase P-domain DA442_20220 PF00512 His Kinase A (phospho-acceptor) domain DA442_20225 PF00072 Response regulator receiver domain DA442_20225 PF00486 Transcriptional regulatory protein, C terminal DA442_20245 PF01048 Phosphorylase superfamily DA442_20260 PF00356 Bacterial regulatory proteins, lacI family DA442_20260 PF13377 Periplasmic binding protein-like domain DA442_20265 PF00294 pfkB family carbohydrate kinase DA442_20270 PF13407 Periplasmic binding protein domain DA442_20280 PF00005 ABC transporter DA442_20285 PF05025 RbsD / FucU transport protein family DA442_20290 PF00563 EAL domain DA442_20290 PF00990 GGDEF domain DA442_20295 PF01048 Phosphorylase superfamily DA442_20305 PF13645 DA442_20305 DA442_20320 PF09335 DA442_20320 DA442_20330 PF13590 Domain of unknown function (DUF4136) DA442_20340 PF04116 DA442_20340 DA442_20345 PF10974 DA442_20345 DA442_20350 PF02566 OsmC-like protein DA442_20355 PF00072 Response regulator receiver domain DA442_20355 PF00512 His Kinase A (phospho-acceptor) domain DA442_20355 PF01627 Hpt domain DA442_20355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_20360 PF00034 Cytochrome c DA442_20360 PF03150 Di-haem cytochrome c peroxidase DA442_20375 PF00563 EAL domain DA442_20375 PF00990 GGDEF domain DA442_20375 PF05228 DA442_20375 DA442_20375 PF13426 PAS domain DA442_20385 PF01957 NfeD-like C-terminal, partner-binding DA442_20390 PF01145 SPFH domain / Band 7 family DA442_20400 PF00881 Nitroreductase family DA442_20405 PF00005 ABC transporter DA442_20410 PF00528 Binding-protein-dependent transport system inner membrane component DA442_20415 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DA442_20420 PF00732 GMC oxidoreductase DA442_20420 PF05199 GMC oxidoreductase DA442_20425 PF00171 Aldehyde dehydrogenase family DA442_20430 PF00440 Bacterial regulatory proteins, tetR family DA442_20430 PF13977 Bacterial transcriptional repressor DA442_20435 PF00990 GGDEF domain DA442_20445 PF13561 Enoyl-(Acyl carrier protein) reductase DA442_20450 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DA442_20450 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DA442_20455 PF16113 DA442_20455 DA442_20460 PF00378 Enoyl-CoA hydratase/isomerase family DA442_20465 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DA442_20465 PF02770 Acyl-CoA dehydrogenase, middle domain DA442_20465 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DA442_20470 PF00171 Aldehyde dehydrogenase family DA442_20475 PF00108 Thiolase, N-terminal domain DA442_20475 PF02803 Thiolase, C-terminal domain DA442_20480 PF00376 MerR family regulatory protein DA442_20480 PF09278 MerR, DNA binding DA442_20485 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DA442_20485 PF02770 Acyl-CoA dehydrogenase, middle domain DA442_20485 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DA442_20495 PF00378 Enoyl-CoA hydratase/isomerase family DA442_20500 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain DA442_20500 PF00364 Biotin-requiring enzyme DA442_20500 PF02785 Biotin carboxylase C-terminal domain DA442_20500 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DA442_20505 PF00682 HMGL-like DA442_20510 PF00072 Response regulator receiver domain DA442_20510 PF00512 His Kinase A (phospho-acceptor) domain DA442_20510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_20510 PF13426 PAS domain DA442_20515 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein DA442_20520 PF08895 DA442_20520 DA442_20525 PF00924 Mechanosensitive ion channel DA442_20535 PF12464 Maltose acetyltransferase DA442_20535 PF14602 Hexapeptide repeat of succinyl-transferase DA442_20540 PF00155 Aminotransferase class I and II DA442_20540 PF00392 Bacterial regulatory proteins, gntR family DA442_20545 PF01654 DA442_20545 DA442_20550 PF02322 DA442_20550 DA442_20555 PF10617 DA442_20555 DA442_20560 PF02567 Phenazine biosynthesis-like protein DA442_20565 PF02627 Carboxymuconolactone decarboxylase family DA442_20570 PF13411 MerR HTH family regulatory protein DA442_20575 PF00174 Oxidoreductase molybdopterin binding domain DA442_20575 PF03404 Mo-co oxidoreductase dimerisation domain DA442_20580 PF00034 Cytochrome c DA442_20585 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DA442_20590 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase DA442_20590 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg DA442_20590 PF17147 DA442_20590 DA442_20595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_20595 PF03466 LysR substrate binding domain DA442_20600 PF05724 Thiopurine S-methyltransferase (TPMT) DA442_20605 PF00501 AMP-binding enzyme DA442_20610 PF00005 ABC transporter DA442_20615 PF13458 Periplasmic binding protein DA442_20620 PF02653 DA442_20620 DA442_20625 PF02653 DA442_20625 DA442_20630 PF00501 AMP-binding enzyme DA442_20635 PF00005 ABC transporter DA442_20635 PF12399 Branched-chain amino acid ATP-binding cassette transporter DA442_20645 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase DA442_20645 PF13450 NAD(P)-binding Rossmann-like domain DA442_20650 PF01012 Electron transfer flavoprotein domain DA442_20655 PF00766 Electron transfer flavoprotein FAD-binding domain DA442_20655 PF01012 Electron transfer flavoprotein domain DA442_20660 PF00501 AMP-binding enzyme DA442_20665 PF00478 IMP dehydrogenase / GMP reductase domain DA442_20670 PF01256 Carbohydrate kinase DA442_20670 PF03853 YjeF-related protein N-terminus DA442_20675 PF00989 PAS fold DA442_20680 PF00072 Response regulator receiver domain DA442_20685 PF00248 Aldo/keto reductase family DA442_20700 PF00654 Voltage gated chloride channel DA442_20705 PF03595 Voltage-dependent anion channel DA442_20710 PF01566 DA442_20710 DA442_20715 PF01227 GTP cyclohydrolase I DA442_20720 PF00994 Probable molybdopterin binding domain DA442_20720 PF03453 MoeA N-terminal region (domain I and II) DA442_20720 PF03454 MoeA C-terminal region (domain IV) DA442_20725 PF00899 ThiF family DA442_20730 PF16130 DA442_20730 DA442_20745 PF00581 Rhodanese-like domain DA442_20750 PF00563 EAL domain DA442_20750 PF00990 GGDEF domain DA442_20750 PF02743 Cache domain DA442_20755 PF00704 Glycosyl hydrolases family 18 DA442_20760 PF04198 Putative sugar-binding domain DA442_20775 PF00923 Transaldolase DA442_20780 PF00456 Transketolase, thiamine diphosphate binding domain DA442_20780 PF02779 Transketolase, pyrimidine binding domain DA442_20780 PF02780 Transketolase, C-terminal domain DA442_20795 PF07690 Major Facilitator Superfamily DA442_20800 PF00793 DAHP synthetase I family DA442_20810 PF00691 OmpA family DA442_20810 PF13505 Outer membrane protein beta-barrel domain DA442_20815 PF13419 Haloacid dehalogenase-like hydrolase DA442_20820 PF00472 RF-1 domain DA442_20825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_20830 PF00873 AcrB/AcrD/AcrF family DA442_20835 PF16576 DA442_20835 DA442_20840 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DA442_20845 PF01546 Peptidase family M20/M25/M40 DA442_20845 PF07687 Peptidase dimerisation domain DA442_20860 PF00072 Response regulator receiver domain DA442_20860 PF00196 Bacterial regulatory proteins, luxR family DA442_20865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_20865 PF07730 Histidine kinase DA442_20865 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term DA442_20870 PF12838 4Fe-4S dicluster domain DA442_20875 PF03927 NapD protein DA442_20880 PF00384 Molybdopterin oxidoreductase DA442_20880 PF01568 Molydopterin dinucleotide binding domain DA442_20880 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DA442_20885 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) DA442_20890 PF03264 NapC/NirT cytochrome c family, N-terminal region DA442_20895 PF09574 DA442_20895 DA442_20900 PF07167 DA442_20900 DA442_20905 PF09361 DA442_20905 DA442_20910 PF00108 Thiolase, N-terminal domain DA442_20910 PF02803 Thiolase, C-terminal domain DA442_20915 PF13561 Enoyl-(Acyl carrier protein) reductase DA442_20920 PF01810 DA442_20920 DA442_20930 PF02355 Protein export membrane protein DA442_20930 PF07549 SecD/SecF GG Motif DA442_20935 PF02355 Protein export membrane protein DA442_20935 PF07549 SecD/SecF GG Motif DA442_20935 PF13721 SecD export protein N-terminal TM region DA442_20945 PF08239 Bacterial SH3 domain DA442_20960 PF13649 Methyltransferase domain DA442_20965 PF01037 AsnC family DA442_20965 PF13412 Winged helix-turn-helix DNA-binding DA442_20970 PF00892 EamA-like transporter family DA442_20975 PF07238 PilZ domain DA442_20975 PF12945 Flagellar protein YcgR DA442_20980 PF11168 DA442_20980 DA442_20985 PF13533 Biotin-lipoyl like DA442_20990 PF01047 MarR family DA442_20995 PF00072 Response regulator receiver domain DA442_20995 PF00512 His Kinase A (phospho-acceptor) domain DA442_20995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_20995 PF09308 LuxQ, periplasmic DA442_21000 PF13407 Periplasmic binding protein domain DA442_21005 PF01541 GIY-YIG catalytic domain DA442_21010 PF04337 Protein of unknown function, DUF480 DA442_21025 PF04363 DA442_21025 DA442_21030 PF01554 MatE DA442_21040 PF00072 Response regulator receiver domain DA442_21040 PF00512 His Kinase A (phospho-acceptor) domain DA442_21040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_21045 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DA442_21045 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DA442_21060 PF01810 DA442_21060 DA442_21065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_21065 PF03466 LysR substrate binding domain DA442_21070 PF01037 AsnC family DA442_21070 PF13404 AsnC-type helix-turn-helix domain DA442_21080 PF13520 Amino acid permease DA442_21085 PF00155 Aminotransferase class I and II DA442_21085 PF00392 Bacterial regulatory proteins, gntR family DA442_21090 PF12900 Pyridoxamine 5'-phosphate oxidase DA442_21095 PF00512 His Kinase A (phospho-acceptor) domain DA442_21095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_21100 PF00072 Response regulator receiver domain DA442_21100 PF00486 Transcriptional regulatory protein, C terminal DA442_21115 PF12625 DA442_21115 DA442_21115 PF12833 Helix-turn-helix domain DA442_21125 PF13533 Biotin-lipoyl like DA442_21130 PF03109 DA442_21130 DA442_21135 PF01769 Divalent cation transporter DA442_21135 PF03448 MgtE intracellular N domain DA442_21145 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin DA442_21150 PF07969 Amidohydrolase family DA442_21160 PF01966 HD domain DA442_21165 PF13443 Cro/C1-type HTH DNA-binding domain DA442_21175 PF01553 Acyltransferase DA442_21175 PF07690 Major Facilitator Superfamily DA442_21185 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DA442_21190 PF00255 Glutathione peroxidase DA442_21195 PF11911 DA442_21195 DA442_21205 PF01323 DSBA-like thioredoxin domain DA442_21215 PF16561 DA442_21215 DA442_21225 PF00106 short chain dehydrogenase DA442_21230 PF00072 Response regulator receiver domain DA442_21230 PF00486 Transcriptional regulatory protein, C terminal DA442_21235 PF00512 His Kinase A (phospho-acceptor) domain DA442_21235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_21245 PF01219 Prokaryotic diacylglycerol kinase DA442_21250 PF00884 Sulfatase DA442_21250 PF08019 DA442_21250 DA442_21255 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DA442_21270 PF03733 DA442_21270 DA442_21280 PF01047 MarR family DA442_21285 PF01545 Cation efflux family DA442_21290 PF01734 Patatin-like phospholipase DA442_21295 PF02678 Pirin DA442_21295 PF05726 Pirin C-terminal cupin domain DA442_21300 PF00313 'Cold-shock' DNA-binding domain DA442_21320 PF00962 Adenosine/AMP deaminase DA442_21325 PF08534 Redoxin DA442_21330 PF00089 Trypsin DA442_21335 PF05036 Sporulation related domain DA442_21345 PF00768 D-alanyl-D-alanine carboxypeptidase DA442_21345 PF07943 Penicillin-binding protein 5, C-terminal domain DA442_21360 PF02798 Glutathione S-transferase, N-terminal domain DA442_21360 PF13410 Glutathione S-transferase, C-terminal domain DA442_21395 PF13561 Enoyl-(Acyl carrier protein) reductase DA442_21405 PF00950 DA442_21405 DA442_21410 PF01297 Periplasmic solute binding protein family DA442_21420 PF12973 ChrR Cupin-like domain DA442_21425 PF03061 Thioesterase superfamily DA442_21435 PF00528 Binding-protein-dependent transport system inner membrane component DA442_21440 PF00528 Binding-protein-dependent transport system inner membrane component DA442_21440 PF14785 Maltose transport system permease protein MalF P2 domain DA442_21445 PF13416 Bacterial extracellular solute-binding protein DA442_21450 PF00005 ABC transporter DA442_21450 PF08402 TOBE domain DA442_21455 PF02397 DA442_21455 DA442_21455 PF13727 CoA-binding domain DA442_21460 PF10082 DA442_21460 DA442_21465 PF02563 Polysaccharide biosynthesis/export protein DA442_21465 PF10531 SLBB domain DA442_21475 PF10364 DA442_21475 DA442_21480 PF00534 Glycosyl transferases group 1 DA442_21480 PF13439 Glycosyltransferase Family 4 DA442_21485 PF04932 DA442_21485 DA442_21490 PF10364 DA442_21490 DA442_21495 PF13579 Glycosyl transferase 4-like domain DA442_21495 PF13692 Glycosyl transferases group 1 DA442_21500 PF01943 DA442_21500 DA442_21500 PF14667 Polysaccharide biosynthesis C-terminal domain DA442_21505 PF04892 DA442_21505 DA442_21510 PF04266 ASCH domain DA442_21515 PF00440 Bacterial regulatory proteins, tetR family DA442_21515 PF16925 DA442_21515 DA442_21520 PF00107 Zinc-binding dehydrogenase DA442_21520 PF16884 DA442_21520 DA442_21525 PF00043 Glutathione S-transferase, C-terminal domain DA442_21525 PF02798 Glutathione S-transferase, N-terminal domain DA442_21530 PF00199 Catalase DA442_21530 PF06628 Catalase-related immune-responsive DA442_21535 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DA442_21535 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DA442_21545 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DA442_21550 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DA442_21555 PF12833 Helix-turn-helix domain DA442_21565 PF01238 Phosphomannose isomerase type I DA442_21575 PF13419 Haloacid dehalogenase-like hydrolase DA442_21580 PF00127 Copper binding proteins, plastocyanin/azurin family DA442_21585 PF00563 EAL domain DA442_21585 PF02378 Phosphotransferase system, EIIC DA442_21590 PF02386 Cation transport protein DA442_21595 PF02254 TrkA-N domain DA442_21600 PF00072 Response regulator receiver domain DA442_21600 PF00486 Transcriptional regulatory protein, C terminal DA442_21605 PF00512 His Kinase A (phospho-acceptor) domain DA442_21605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_21605 PF13493 Domain of unknown function (DUF4118) DA442_21610 PF00005 ABC transporter DA442_21610 PF00664 ABC transporter transmembrane region DA442_21615 PF00593 TonB dependent receptor DA442_21615 PF07715 TonB-dependent Receptor Plug Domain DA442_21620 PF00005 ABC transporter DA442_21630 PF01032 FecCD transport family DA442_21635 PF00924 Mechanosensitive ion channel DA442_21640 PF00691 OmpA family DA442_21655 PF13437 HlyD family secretion protein DA442_21655 PF13533 Biotin-lipoyl like DA442_21660 PF00005 ABC transporter DA442_21665 PF00353 Hemolysin-type calcium-binding repeat (2 copies) DA442_21670 PF00196 Bacterial regulatory proteins, luxR family DA442_21675 PF00196 Bacterial regulatory proteins, luxR family DA442_21685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_21685 PF00672 HAMP domain DA442_21695 PF07726 ATPase family associated with various cellular activities (AAA) DA442_21700 PF01882 DA442_21700 DA442_21705 PF14316 DA442_21705 DA442_21710 PF00092 von Willebrand factor type A domain DA442_21720 PF13584 DA442_21720 DA442_21725 PF00990 GGDEF domain DA442_21730 PF00005 ABC transporter DA442_21735 PF00528 Binding-protein-dependent transport system inner membrane component DA442_21740 PF00528 Binding-protein-dependent transport system inner membrane component DA442_21745 PF12849 PBP superfamily domain DA442_21750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_21750 PF00672 HAMP domain DA442_21755 PF07603 DA442_21755 DA442_21760 PF07603 DA442_21760 DA442_21770 PF00593 TonB dependent receptor DA442_21770 PF07715 TonB-dependent Receptor Plug Domain DA442_21775 PF00326 Prolyl oligopeptidase family DA442_21775 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DA442_21780 PF00270 DEAD/DEAH box helicase DA442_21780 PF00271 Helicase conserved C-terminal domain DA442_21785 PF04728 Lipoprotein leucine-zipper DA442_21790 PF01476 LysM domain DA442_21790 PF03734 L,D-transpeptidase catalytic domain DA442_21795 PF00875 DNA photolyase DA442_21795 PF03441 FAD binding domain of DNA photolyase DA442_21800 PF13411 MerR HTH family regulatory protein DA442_21805 PF04463 DA442_21805 DA442_21805 PF08349 DA442_21805 DA442_21815 PF01048 Phosphorylase superfamily DA442_21830 PF00990 GGDEF domain DA442_21835 PF11742 DA442_21835 DA442_21840 PF13533 Biotin-lipoyl like DA442_21845 PF07155 ECF-type riboflavin transporter, S component DA442_21850 PF00005 ABC transporter DA442_21850 PF12558 DA442_21850 DA442_21855 PF02361 Cobalt transport protein DA442_21860 PF07690 Major Facilitator Superfamily DA442_21865 PF12801 DA442_21865 DA442_21865 PF13187 4Fe-4S dicluster domain DA442_21870 PF12800 4Fe-4S binding domain DA442_21870 PF12838 4Fe-4S dicluster domain DA442_21875 PF00583 Acetyltransferase (GNAT) family DA442_21880 PF02958 Ecdysteroid kinase DA442_21885 PF14542 GCN5-related N-acetyl-transferase DA442_21895 PF07238 PilZ domain DA442_21895 PF12945 Flagellar protein YcgR DA442_21900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_21900 PF00672 HAMP domain DA442_21905 PF05362 Lon protease (S16) C-terminal proteolytic domain DA442_21905 PF13654 AAA domain DA442_21915 PF00005 ABC transporter DA442_21915 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DA442_21920 PF00326 Prolyl oligopeptidase family DA442_21920 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DA442_21925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_21925 PF03466 LysR substrate binding domain DA442_21930 PF02652 DA442_21930 DA442_21935 PF01070 FMN-dependent dehydrogenase DA442_21940 PF13443 Cro/C1-type HTH DNA-binding domain DA442_21945 PF00924 Mechanosensitive ion channel DA442_21950 PF00194 Eukaryotic-type carbonic anhydrase DA442_21955 PF05229 DA442_21955 DA442_21960 PF00577 Outer membrane usher protein DA442_21965 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DA442_21970 PF05229 DA442_21970 DA442_21975 PF05229 DA442_21975 DA442_21985 PF00107 Zinc-binding dehydrogenase DA442_21985 PF08240 Alcohol dehydrogenase GroES-like domain DA442_21990 PF00155 Aminotransferase class I and II DA442_21995 PF00563 EAL domain DA442_21995 PF00990 GGDEF domain DA442_22000 PF00497 Bacterial extracellular solute-binding proteins, family 3 DA442_22005 PF00266 Aminotransferase class-V DA442_22010 PF00080 Copper/zinc superoxide dismutase (SODC) DA442_22015 PF00512 His Kinase A (phospho-acceptor) domain DA442_22020 PF00072 Response regulator receiver domain DA442_22020 PF00486 Transcriptional regulatory protein, C terminal DA442_22030 PF06468 Spondin_N DA442_22035 PF06468 Spondin_N DA442_22050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_22050 PF03466 LysR substrate binding domain DA442_22055 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DA442_22060 PF03929 DA442_22060 DA442_22070 PF07361 Cytochrome b562 DA442_22080 PF08327 Activator of Hsp90 ATPase homolog 1-like protein DA442_22085 PF00892 EamA-like transporter family DA442_22090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_22090 PF03466 LysR substrate binding domain DA442_22095 PF00089 Trypsin DA442_22100 PF02050 Flagellar FliJ protein DA442_22105 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DA442_22110 PF02108 DA442_22110 DA442_22115 PF01706 FliG C-terminal domain DA442_22115 PF14841 FliG middle domain DA442_22115 PF14842 FliG N-terminal domain DA442_22120 PF01514 Secretory protein of YscJ/FliF family DA442_22120 PF08345 DA442_22120 DA442_22125 PF02049 DA442_22125 DA442_22130 PF00158 Sigma-54 interaction domain DA442_22130 PF02954 Bacterial regulatory protein, Fis family DA442_22140 PF01052 Surface presentation of antigens (SPOA) DA442_22145 PF01052 Surface presentation of antigens (SPOA) DA442_22150 PF00813 DA442_22150 DA442_22155 PF01313 DA442_22155 DA442_22165 PF01312 FlhB HrpN YscU SpaS Family DA442_22170 PF00771 FHIPEP family DA442_22175 PF00563 EAL domain DA442_22180 PF00669 Bacterial flagellin N-terminal helical region DA442_22180 PF00700 Bacterial flagellin C-terminal helical region DA442_22190 PF02465 DA442_22190 DA442_22190 PF07195 DA442_22190 DA442_22190 PF07196 Flagellin hook IN motif DA442_22195 PF02561 Flagellar protein FliS DA442_22205 PF02120 Flagellar hook-length control protein FliK DA442_22210 PF03748 DA442_22210 DA442_22215 PF04542 Sigma-70 region 2 DA442_22215 PF04545 Sigma-70, region 4 DA442_22220 PF01618 DA442_22220 DA442_22235 PF08000 Bacterial PH domain DA442_22240 PF09493 DA442_22240 DA442_22245 PF04982 DA442_22245 DA442_22250 PF00440 Bacterial regulatory proteins, tetR family DA442_22255 PF01228 Glycine radical DA442_22255 PF02901 Pyruvate formate lyase DA442_22260 PF04055 Radical SAM superfamily DA442_22260 PF13353 4Fe-4S single cluster domain DA442_22270 PF10973 DA442_22270 DA442_22275 PF00583 Acetyltransferase (GNAT) family DA442_22280 PF00583 Acetyltransferase (GNAT) family DA442_22285 PF07690 Major Facilitator Superfamily DA442_22290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_22290 PF03466 LysR substrate binding domain DA442_22295 PF00892 EamA-like transporter family DA442_22305 PF04632 DA442_22305 DA442_22310 PF02321 Outer membrane efflux protein DA442_22315 PF07869 DA442_22315 DA442_22320 PF16576 DA442_22320 DA442_22325 PF07885 Ion channel DA442_22330 PF01594 DA442_22330 DA442_22335 PF09829 DA442_22335 DA442_22340 PF06271 DA442_22340 DA442_22345 PF00175 Oxidoreductase NAD-binding domain DA442_22345 PF00970 Oxidoreductase FAD-binding domain DA442_22350 PF13279 Thioesterase-like superfamily DA442_22355 PF09905 Uncharacterized conserved protein (DUF2132) DA442_22360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_22360 PF03466 LysR substrate binding domain DA442_22365 PF03992 Antibiotic biosynthesis monooxygenase DA442_22370 PF00881 Nitroreductase family DA442_22375 PF12833 Helix-turn-helix domain DA442_22380 PF00128 Alpha amylase, catalytic domain DA442_22380 PF09985 Domain of unknown function (DUF2223) DA442_22385 PF00768 D-alanyl-D-alanine carboxypeptidase DA442_22385 PF07943 Penicillin-binding protein 5, C-terminal domain DA442_22390 PF00561 alpha/beta hydrolase fold DA442_22395 PF00583 Acetyltransferase (GNAT) family DA442_22400 PF00581 Rhodanese-like domain DA442_22405 PF03067 Chitin binding domain DA442_22410 PF01734 Patatin-like phospholipase DA442_22415 PF01914 DA442_22415 DA442_22420 PF00881 Nitroreductase family DA442_22425 PF02563 Polysaccharide biosynthesis/export protein DA442_22425 PF10531 SLBB domain DA442_22430 PF01451 Low molecular weight phosphotyrosine protein phosphatase DA442_22435 PF02706 Chain length determinant protein DA442_22435 PF13614 AAA domain DA442_22435 PF13807 DA442_22435 DA442_22445 PF08803 Putative mono-oxygenase ydhR DA442_22450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_22450 PF03466 LysR substrate binding domain DA442_22455 PF08874 DA442_22455 DA442_22460 PF00375 Sodium:dicarboxylate symporter family DA442_22465 PF06803 DA442_22465 DA442_22470 PF01546 Peptidase family M20/M25/M40 DA442_22470 PF07687 Peptidase dimerisation domain DA442_22475 PF07670 Nucleoside recognition DA442_22480 PF07670 Nucleoside recognition DA442_22490 PF13462 Thioredoxin DA442_22495 PF00128 Alpha amylase, catalytic domain DA442_22500 PF00912 Transglycosylase DA442_22505 PF00128 Alpha amylase, catalytic domain DA442_22505 PF02806 Alpha amylase, C-terminal all-beta domain DA442_22505 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DA442_22510 PF02446 4-alpha-glucanotransferase DA442_22515 PF00343 Carbohydrate phosphorylase DA442_22530 PF00196 Bacterial regulatory proteins, luxR family DA442_22535 PF04018 DA442_22535 DA442_22545 PF02630 SCO1/SenC DA442_22550 PF04314 Protein of unknown function (DUF461) DA442_22555 PF00367 phosphotransferase system, EIIB DA442_22560 PF03193 Protein of unknown function, DUF258 DA442_22565 PF00375 Sodium:dicarboxylate symporter family DA442_22575 PF08543 Phosphomethylpyrimidine kinase DA442_22580 PF04014 Antidote-toxin recognition MazE DA442_22585 PF13520 Amino acid permease DA442_22590 PF01276 Orn/Lys/Arg decarboxylase, major domain DA442_22590 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain DA442_22590 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DA442_22600 PF08238 Sel1 repeat DA442_22605 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DA442_22605 PF03714 Bacterial pullanase-associated domain DA442_22605 PF11852 Domain of unknown function (DUF3372) DA442_22610 PF02018 Carbohydrate binding domain DA442_22610 PF04231 Endonuclease I DA442_22620 PF00128 Alpha amylase, catalytic domain DA442_22630 PF07148 DA442_22630 DA442_22635 PF02264 LamB porin DA442_22640 PF00128 Alpha amylase, catalytic domain DA442_22645 PF00239 Resolvase, N terminal domain DA442_22650 PF07690 Major Facilitator Superfamily DA442_22660 PF01551 Peptidase family M23 DA442_22665 PF04519 DA442_22665 DA442_22670 PF00675 Insulinase (Peptidase family M16) DA442_22670 PF05193 Peptidase M16 inactive domain DA442_22675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_22675 PF00672 HAMP domain DA442_22675 PF02743 Cache domain DA442_22680 PF00005 ABC transporter DA442_22685 PF01032 FecCD transport family DA442_22690 PF01032 FecCD transport family DA442_22695 PF01497 Periplasmic binding protein DA442_22700 PF00593 TonB dependent receptor DA442_22700 PF07715 TonB-dependent Receptor Plug Domain DA442_22705 PF00593 TonB dependent receptor DA442_22705 PF07715 TonB-dependent Receptor Plug Domain DA442_22715 PF04183 IucA / IucC family DA442_22715 PF06276 Ferric iron reductase FhuF-like transporter DA442_22720 PF07690 Major Facilitator Superfamily DA442_22725 PF04183 IucA / IucC family DA442_22725 PF06276 Ferric iron reductase FhuF-like transporter DA442_22730 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DA442_22730 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DA442_22735 PF13416 Bacterial extracellular solute-binding protein DA442_22740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_22745 PF00072 Response regulator receiver domain DA442_22745 PF00486 Transcriptional regulatory protein, C terminal DA442_22755 PF00367 phosphotransferase system, EIIB DA442_22755 PF02378 Phosphotransferase system, EIIC DA442_22760 PF03625 Domain of unknown function DUF302 DA442_22765 PF01136 DA442_22765 DA442_22770 PF02653 DA442_22770 DA442_22775 PF00005 ABC transporter DA442_22780 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DA442_22790 PF00596 Class II Aldolase and Adducin N-terminal domain DA442_22795 PF02610 L-arabinose isomerase DA442_22795 PF11762 L-arabinose isomerase C-terminal domain DA442_22805 PF02311 AraC-like ligand binding domain DA442_22805 PF12833 Helix-turn-helix domain DA442_22810 PF11730 DA442_22810 DA442_22815 PF02698 DUF218 domain DA442_22820 PF02566 OsmC-like protein DA442_22825 PF01047 MarR family DA442_22830 PF00578 AhpC/TSA family DA442_22830 PF10417 C-terminal domain of 1-Cys peroxiredoxin DA442_22835 PF07992 Pyridine nucleotide-disulphide oxidoreductase DA442_22835 PF13192 Thioredoxin domain DA442_22850 PF14412 DA442_22850 DA442_22855 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DA442_22860 PF00188 Cysteine-rich secretory protein family DA442_22865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_22865 PF03466 LysR substrate binding domain DA442_22875 PF01965 DJ-1/PfpI family DA442_22880 PF04542 Sigma-70 region 2 DA442_22880 PF08281 Sigma-70, region 4 DA442_22895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_22895 PF13682 Chemoreceptor zinc-binding domain DA442_22900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_22900 PF03466 LysR substrate binding domain DA442_22905 PF02056 Family 4 glycosyl hydrolase DA442_22905 PF11975 Family 4 glycosyl hydrolase C-terminal domain DA442_22910 PF08240 Alcohol dehydrogenase GroES-like domain DA442_22910 PF13602 Zinc-binding dehydrogenase DA442_22915 PF12833 Helix-turn-helix domain DA442_22920 PF03473 MOSC domain DA442_22920 PF03475 3-alpha domain DA442_22925 PF00270 DEAD/DEAH box helicase DA442_22925 PF00271 Helicase conserved C-terminal domain DA442_22930 PF03786 D-mannonate dehydratase (UxuA) DA442_22935 PF00392 Bacterial regulatory proteins, gntR family DA442_22935 PF07729 FCD domain DA442_22940 PF03480 Bacterial extracellular solute-binding protein, family 7 DA442_22945 PF04290 DA442_22945 DA442_22950 PF06808 DA442_22950 DA442_22955 PF01232 Mannitol dehydrogenase Rossmann domain DA442_22955 PF08125 Mannitol dehydrogenase C-terminal domain DA442_22960 PF02614 Glucuronate isomerase DA442_22965 PF00294 pfkB family carbohydrate kinase DA442_22970 PF01081 KDPG and KHG aldolase DA442_22975 PF10688 DA442_22975 DA442_22980 PF02627 Carboxymuconolactone decarboxylase family DA442_22990 PF07883 Cupin domain DA442_22995 PF06719 DA442_22995 DA442_22995 PF12833 Helix-turn-helix domain DA442_23000 PF02274 Amidinotransferase DA442_23005 PF00005 ABC transporter DA442_23005 PF00664 ABC transporter transmembrane region DA442_23015 PF01037 AsnC family DA442_23015 PF13412 Winged helix-turn-helix DNA-binding DA442_23030 PF13302 Acetyltransferase (GNAT) domain DA442_23040 PF00076 RNA recognition motif DA442_23045 PF13302 Acetyltransferase (GNAT) domain DA442_23050 PF00474 Sodium:solute symporter family DA442_23060 PF00171 Aldehyde dehydrogenase family DA442_23060 PF01619 Proline dehydrogenase DA442_23060 PF14850 DNA-binding domain of Proline dehydrogenase DA442_23065 PF12833 Helix-turn-helix domain DA442_23075 PF00196 Bacterial regulatory proteins, luxR family DA442_23075 PF08448 PAS fold DA442_23080 PF01243 Pyridoxamine 5'-phosphate oxidase DA442_23080 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region DA442_23085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_23085 PF02743 Cache domain DA442_23090 PF00072 Response regulator receiver domain DA442_23090 PF02954 Bacterial regulatory protein, Fis family DA442_23095 PF13437 HlyD family secretion protein DA442_23095 PF13533 Biotin-lipoyl like DA442_23100 PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP DA442_23105 PF00563 EAL domain DA442_23105 PF00990 GGDEF domain DA442_23105 PF16448 DA442_23105 DA442_23110 PF00005 ABC transporter DA442_23110 PF00664 ABC transporter transmembrane region DA442_23110 PF03412 Peptidase C39 family DA442_23115 PF00924 Mechanosensitive ion channel DA442_23120 PF03358 NADPH-dependent FMN reductase DA442_23125 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DA442_23130 PF00246 Zinc carboxypeptidase DA442_23135 PF01380 SIS domain DA442_23135 PF01418 Helix-turn-helix domain, rpiR family DA442_23145 PF01380 SIS domain DA442_23150 PF00367 phosphotransferase system, EIIB DA442_23150 PF02378 Phosphotransferase system, EIIC DA442_23160 PF03575 Peptidase family S51 DA442_23165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_23165 PF03466 LysR substrate binding domain DA442_23170 PF00132 Bacterial transferase hexapeptide (six repeats) DA442_23175 PF03961 DA442_23175 DA442_23180 PF05127 Helicase DA442_23180 PF08351 Domain of unknown function (DUF1726) DA442_23180 PF13718 GNAT acetyltransferase 2 DA442_23185 PF02195 ParB-like nuclease domain DA442_23190 PF13614 AAA domain DA442_23200 PF11826 DA442_23200 DA442_23210 PF00005 ABC transporter DA442_23210 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DA442_23215 PF00005 ABC transporter DA442_23225 PF00925 GTP cyclohydrolase II DA442_23225 PF08719 Domain of unknown function (DUF1768) DA442_23235 PF00497 Bacterial extracellular solute-binding proteins, family 3 DA442_23240 PF00072 Response regulator receiver domain DA442_23240 PF00512 His Kinase A (phospho-acceptor) domain DA442_23240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_23240 PF17149 DA442_23240 DA442_23245 PF11686 DA442_23245 DA442_23250 PF01709 Transcriptional regulator DA442_23255 PF01098 DA442_23255 DA442_23270 PF00005 ABC transporter DA442_23275 PF02687 DA442_23275 DA442_23275 PF12704 MacB-like periplasmic core domain DA442_23280 PF17131 DA442_23280 DA442_23290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_23290 PF06580 DA442_23290 DA442_23295 PF00072 Response regulator receiver domain DA442_23295 PF04397 LytTr DNA-binding domain DA442_23300 PF10026 DA442_23300 DA442_23305 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DA442_23310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_23310 PF17200 DA442_23310 DA442_23315 PF04134 DA442_23315 DA442_23320 PF14247 DA442_23320 DA442_23325 PF00132 Bacterial transferase hexapeptide (six repeats) DA442_23340 PF03616 DA442_23340 DA442_23350 PF00005 ABC transporter DA442_23355 PF00392 Bacterial regulatory proteins, gntR family DA442_23360 PF03616 DA442_23360 DA442_23375 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DA442_23380 PF11280 DA442_23380 DA442_23385 PF04219 DA442_23385 DA442_23390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_23390 PF03466 LysR substrate binding domain DA442_23395 PF02678 Pirin DA442_23400 PF07681 DA442_23400 DA442_23415 PF00730 HhH-GPD superfamily base excision DNA repair protein DA442_23415 PF02805 Metal binding domain of Ada DA442_23415 PF06029 AlkA N-terminal domain DA442_23415 PF12833 Helix-turn-helix domain DA442_23420 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DA442_23420 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DA442_23430 PF02588 DA442_23430 DA442_23435 PF04828 Glutathione-dependent formaldehyde-activating enzyme DA442_23440 PF03600 Citrate transporter DA442_23445 PF01757 DA442_23445 DA442_23450 PF00440 Bacterial regulatory proteins, tetR family DA442_23455 PF12146 Putative lysophospholipase DA442_23460 PF00704 Glycosyl hydrolases family 18 DA442_23460 PF02010 DA442_23460 DA442_23460 PF02839 Carbohydrate binding domain DA442_23460 PF08329 Chitinase A, N-terminal domain DA442_23465 PF11012 DA442_23465 DA442_23470 PF06865 Protein of unknown function (DUF1255) DA442_23490 PF01554 MatE DA442_23495 PF00849 RNA pseudouridylate synthase DA442_23500 PF01323 DSBA-like thioredoxin domain DA442_23505 PF00753 Metallo-beta-lactamase superfamily DA442_23510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_23510 PF03466 LysR substrate binding domain DA442_23515 PF08282 haloacid dehalogenase-like hydrolase DA442_23525 PF00990 GGDEF domain DA442_23535 PF00756 Putative esterase DA442_23540 PF00107 Zinc-binding dehydrogenase DA442_23540 PF08240 Alcohol dehydrogenase GroES-like domain DA442_23545 PF00797 N-acetyltransferase DA442_23550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_23550 PF03466 LysR substrate binding domain DA442_23555 PF00929 Exonuclease DA442_23560 PF00571 CBS domain DA442_23560 PF03445 DA442_23560 DA442_23560 PF10335 DA442_23560 DA442_23565 PF01614 Bacterial transcriptional regulator DA442_23565 PF09339 IclR helix-turn-helix domain DA442_23570 PF13561 Enoyl-(Acyl carrier protein) reductase DA442_23580 PF07883 Cupin domain DA442_23585 PF02502 Ribose/Galactose Isomerase DA442_23585 PF12408 Ribose-5-phosphate isomerase DA442_23590 PF07859 alpha/beta hydrolase fold DA442_23595 PF00294 pfkB family carbohydrate kinase DA442_23600 PF01081 KDPG and KHG aldolase DA442_23605 PF00474 Sodium:solute symporter family DA442_23610 PF06178 Oligogalacturonate-specific porin protein (KdgM) DA442_23620 PF00474 Sodium:solute symporter family DA442_23625 PF14583 Oligogalacturonate lyase DA442_23630 PF04954 Siderophore-interacting protein DA442_23630 PF08021 Siderophore-interacting FAD-binding domain DA442_23635 PF01810 DA442_23635 DA442_23640 PF01037 AsnC family DA442_23640 PF13412 Winged helix-turn-helix DNA-binding DA442_23645 PF03067 Chitin binding domain DA442_23650 PF12710 haloacid dehalogenase-like hydrolase DA442_23655 PF07883 Cupin domain DA442_23660 PF00805 Pentapeptide repeats (8 copies) DA442_23660 PF13599 Pentapeptide repeats (9 copies) DA442_23665 PF03922 OmpW family DA442_23670 PF16576 DA442_23670 DA442_23675 PF07690 Major Facilitator Superfamily DA442_23680 PF07073 Modulator of Rho-dependent transcription termination (ROF) DA442_23685 PF12706 Beta-lactamase superfamily domain DA442_23700 PF01661 Macro domain DA442_23705 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DA442_23710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_23710 PF03466 LysR substrate binding domain DA442_23715 PF06742 Protein of unknown function (DUF1214) DA442_23715 PF06863 Protein of unknown function (DUF1254) DA442_23720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_23720 PF03466 LysR substrate binding domain DA442_23725 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DA442_23730 PF13642 protein structure with unknown function DA442_23735 PF06041 Bacterial protein of unknown function (DUF924) DA442_23755 PF05651 DA442_23755 DA442_23755 PF13556 PucR C-terminal helix-turn-helix domain DA442_23760 PF02447 DA442_23760 DA442_23765 PF02595 Glycerate kinase family DA442_23775 PF00892 EamA-like transporter family DA442_23785 PF07963 Prokaryotic N-terminal methylation motif DA442_23790 PF00583 Acetyltransferase (GNAT) family DA442_23795 PF13419 Haloacid dehalogenase-like hydrolase DA442_23800 PF00583 Acetyltransferase (GNAT) family DA442_23805 PF13561 Enoyl-(Acyl carrier protein) reductase DA442_23810 PF13302 Acetyltransferase (GNAT) domain DA442_23815 PF03264 NapC/NirT cytochrome c family, N-terminal region DA442_23820 PF00384 Molybdopterin oxidoreductase DA442_23820 PF01568 Molydopterin dinucleotide binding domain DA442_23825 PF01569 PAP2 superfamily DA442_23830 PF02581 Thiamine monophosphate synthase/TENI DA442_23835 PF02110 Hydroxyethylthiazole kinase family DA442_23840 PF03070 TENA/THI-4/PQQC family DA442_23845 PF09084 NMT1/THI5 like DA442_23850 PF00528 Binding-protein-dependent transport system inner membrane component DA442_23855 PF00005 ABC transporter DA442_23860 PF08543 Phosphomethylpyrimidine kinase DA442_23875 PF01523 Putative modulator of DNA gyrase DA442_23880 PF04013 Putative SAM-dependent RNA methyltransferase DA442_23885 PF11286 DA442_23885 DA442_23935 PF10928 Protein of unknown function (DUF2810) DA442_23940 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DA442_23940 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DA442_23945 PF03734 L,D-transpeptidase catalytic domain DA442_23950 PF03009 Glycerophosphoryl diester phosphodiesterase family DA442_23955 PF00056 lactate/malate dehydrogenase, NAD binding domain DA442_23955 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DA442_23960 PF00072 Response regulator receiver domain DA442_23960 PF00486 Transcriptional regulatory protein, C terminal DA442_23965 PF00512 His Kinase A (phospho-acceptor) domain DA442_23965 PF00672 HAMP domain DA442_23965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_23965 PF16750 DA442_23965 DA442_23970 PF00593 TonB dependent receptor DA442_23970 PF07715 TonB-dependent Receptor Plug Domain DA442_23975 PF11932 DA442_23975 DA442_23980 PF01618 DA442_23980 DA442_23985 PF01618 DA442_23985 DA442_23990 PF02472 Biopolymer transport protein ExbD/TolR DA442_23995 PF03544 Gram-negative bacterial TonB protein C-terminal DA442_24000 PF14559 Tetratricopeptide repeat DA442_24005 PF16357 DA442_24005 DA442_24010 PF10029 DA442_24010 DA442_24015 PF10670 DA442_24015 DA442_24030 PF01297 Periplasmic solute binding protein family DA442_24035 PF00005 ABC transporter DA442_24040 PF00950 DA442_24040 DA442_24055 PF00326 Prolyl oligopeptidase family DA442_24055 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DA442_24060 PF07690 Major Facilitator Superfamily DA442_24065 PF00491 Arginase family DA442_24070 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DA442_24075 PF00753 Metallo-beta-lactamase superfamily DA442_24080 PF05618 Putative ATP-dependant zinc protease DA442_24085 PF08443 RimK-like ATP-grasp domain DA442_24095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_24095 PF03466 LysR substrate binding domain DA442_24105 PF02311 AraC-like ligand binding domain DA442_24105 PF12833 Helix-turn-helix domain DA442_24110 PF04320 DA442_24110 DA442_24120 PF00232 Glycosyl hydrolase family 1 DA442_24125 PF13729 DA442_24125 DA442_24130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_24130 PF13426 PAS domain DA442_24135 PF00072 Response regulator receiver domain DA442_24135 PF00158 Sigma-54 interaction domain DA442_24135 PF02954 Bacterial regulatory protein, Fis family DA442_24145 PF05525 DA442_24145 DA442_24160 PF16868 DA442_24160 DA442_24165 PF06808 DA442_24165 DA442_24170 PF01266 FAD dependent oxidoreductase DA442_24175 PF00031 Cystatin domain DA442_24180 PF01212 Beta-eliminating lyase DA442_24185 PF11140 DA442_24185 DA442_24200 PF01773 Na+ dependent nucleoside transporter N-terminus DA442_24200 PF07662 Na+ dependent nucleoside transporter C-terminus DA442_24200 PF07670 Nucleoside recognition DA442_24205 PF12060 DA442_24205 DA442_24210 PF13532 2OG-Fe(II) oxygenase superfamily DA442_24215 PF00990 GGDEF domain DA442_24215 PF03924 CHASE domain DA442_24220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_24220 PF08376 Nitrate and nitrite sensing DA442_24225 PF01381 Helix-turn-helix DA442_24225 PF06114 Domain of unknown function (DUF955) DA442_24225 PF12268 DA442_24225 DA442_24235 PF00990 GGDEF domain DA442_24240 PF00875 DNA photolyase DA442_24240 PF03441 FAD binding domain of DNA photolyase DA442_24245 PF04244 Deoxyribodipyrimidine photo-lyase-related protein DA442_24250 PF00106 short chain dehydrogenase DA442_24255 PF10013 DA442_24255 DA442_24260 PF01625 Peptide methionine sulfoxide reductase DA442_24260 PF01641 SelR domain DA442_24265 PF02566 OsmC-like protein DA442_24270 PF12464 Maltose acetyltransferase DA442_24270 PF14602 Hexapeptide repeat of succinyl-transferase DA442_24285 PF10462 Peptidase M66 DA442_24295 PF08279 HTH domain DA442_24295 PF13280 DA442_24295 DA442_24305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_24305 PF03466 LysR substrate binding domain DA442_24310 PF13419 Haloacid dehalogenase-like hydrolase DA442_24315 PF00293 NUDIX domain DA442_24325 PF09695 DA442_24325 DA442_24330 PF00194 Eukaryotic-type carbonic anhydrase DA442_24335 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) DA442_24340 PF16576 DA442_24340 DA442_24345 PF00005 ABC transporter DA442_24345 PF02687 DA442_24345 DA442_24345 PF12704 MacB-like periplasmic core domain DA442_24350 PF02321 Outer membrane efflux protein DA442_24355 PF00657 GDSL-like Lipase/Acylhydrolase DA442_24360 PF00082 Subtilase family DA442_24360 PF01483 Proprotein convertase P-domain DA442_24360 PF02225 PA domain DA442_24370 PF03611 DA442_24370 DA442_24375 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DA442_24380 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DA442_24385 PF00356 Bacterial regulatory proteins, lacI family DA442_24385 PF13377 Periplasmic binding protein-like domain DA442_24390 PF13419 Haloacid dehalogenase-like hydrolase DA442_24395 PF00202 Aminotransferase class-III DA442_24400 PF00266 Aminotransferase class-V DA442_24405 PF13343 Bacterial extracellular solute-binding protein DA442_24410 PF13673 Acetyltransferase (GNAT) domain DA442_24420 PF00528 Binding-protein-dependent transport system inner membrane component DA442_24425 PF00392 Bacterial regulatory proteins, gntR family DA442_24425 PF07702 UTRA domain DA442_24430 PF00892 EamA-like transporter family DA442_24435 PF13505 Outer membrane protein beta-barrel domain DA442_24440 PF04393 DA442_24440 DA442_24450 PF01266 FAD dependent oxidoreductase DA442_24465 PF00691 OmpA family DA442_24465 PF01389 OmpA-like transmembrane domain DA442_24470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_24470 PF03466 LysR substrate binding domain DA442_24475 PF01636 Phosphotransferase enzyme family DA442_24480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_24480 PF03466 LysR substrate binding domain DA442_24495 PF03313 DA442_24495 DA442_24495 PF03315 Serine dehydratase beta chain DA442_24500 PF02698 DUF218 domain DA442_24510 PF03891 DA442_24510 DA442_24515 PF00293 NUDIX domain DA442_24525 PF01464 Transglycosylase SLT domain DA442_24530 PF05130 FlgN protein DA442_24535 PF04316 Anti-sigma-28 factor, FlgM DA442_24540 PF13144 SAF-like DA442_24545 PF00460 Flagella basal body rod protein DA442_24550 PF00460 Flagella basal body rod protein DA442_24550 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DA442_24555 PF03963 DA442_24555 DA442_24555 PF13860 FlgD Ig-like domain DA442_24555 PF13861 FlgD Tudor-like domain DA442_24560 PF00460 Flagella basal body rod protein DA442_24560 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DA442_24560 PF07559 Flagellar basal body protein FlaE DA442_24565 PF00460 Flagella basal body rod protein DA442_24565 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DA442_24570 PF00460 Flagella basal body rod protein DA442_24570 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DA442_24575 PF02107 DA442_24575 DA442_24580 PF02119 DA442_24580 DA442_24585 PF10135 DA442_24585 DA442_24590 PF00460 Flagella basal body rod protein DA442_24590 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DA442_24595 PF00669 Bacterial flagellin N-terminal helical region DA442_24605 PF10101 DA442_24605 DA442_24610 PF00999 Sodium/hydrogen exchanger family DA442_24610 PF02254 TrkA-N domain DA442_24615 PF01070 FMN-dependent dehydrogenase DA442_24620 PF11216 DA442_24620 DA442_24625 PF04828 Glutathione-dependent formaldehyde-activating enzyme DA442_24630 PF00581 Rhodanese-like domain DA442_24640 PF00118 TCP-1/cpn60 chaperonin family DA442_24650 PF07968 Leukocidin/Hemolysin toxin family DA442_24655 PF01810 DA442_24655 DA442_24660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_24660 PF03466 LysR substrate binding domain DA442_24665 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DA442_24675 PF00440 Bacterial regulatory proteins, tetR family DA442_24685 PF00149 Calcineurin-like phosphoesterase DA442_24685 PF02872 5'-nucleotidase, C-terminal domain DA442_24690 PF03060 Nitronate monooxygenase DA442_24700 PF07971 Glycosyl hydrolase family 92 DA442_24710 PF07971 Glycosyl hydrolase family 92 DA442_24715 PF07971 Glycosyl hydrolase family 92 DA442_24720 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DA442_24725 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DA442_24735 PF01625 Peptide methionine sulfoxide reductase DA442_24740 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DA442_24745 PF00455 DA442_24745 DA442_24745 PF08220 DeoR-like helix-turn-helix domain DA442_24750 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DA442_24755 PF00199 Catalase DA442_24755 PF06628 Catalase-related immune-responsive DA442_24760 PF12796 Ankyrin repeats (3 copies) DA442_24765 PF00857 Isochorismatase family DA442_24770 PF00293 NUDIX domain DA442_24775 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DA442_24790 PF05433 DA442_24790 DA442_24795 PF13489 Methyltransferase domain DA442_24800 PF00892 EamA-like transporter family DA442_24805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_24805 PF03466 LysR substrate binding domain DA442_24810 PF01389 OmpA-like transmembrane domain DA442_24815 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DA442_24815 PF12793 DA442_24815 DA442_24820 PF06629 DA442_24820 DA442_24830 PF04170 NlpE N-terminal domain DA442_24835 PF02001 DA442_24835 DA442_24840 PF02579 Dinitrogenase iron-molybdenum cofactor DA442_24845 PF04400 DA442_24845 DA442_24850 PF01636 Phosphotransferase enzyme family DA442_24860 PF00009 Elongation factor Tu GTP binding domain DA442_24860 PF00679 Elongation factor G C-terminus DA442_24860 PF03764 Elongation factor G, domain IV DA442_24860 PF14492 Elongation Factor G, domain II DA442_24880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_24880 PF03466 LysR substrate binding domain DA442_24890 PF07690 Major Facilitator Superfamily DA442_24900 PF00376 MerR family regulatory protein DA442_24900 PF09278 MerR, DNA binding DA442_24905 PF09622 DA442_24905 DA442_24920 PF04266 ASCH domain DA442_24925 PF13649 Methyltransferase domain DA442_24930 PF13091 PLD-like domain DA442_24940 PF13437 HlyD family secretion protein DA442_24940 PF13533 Biotin-lipoyl like DA442_24945 PF00873 AcrB/AcrD/AcrF family DA442_24955 PF05990 Alpha/beta hydrolase of unknown function (DUF900) DA442_24970 PF12710 haloacid dehalogenase-like hydrolase DA442_24975 PF00005 ABC transporter DA442_24975 PF08402 TOBE domain DA442_24980 PF00528 Binding-protein-dependent transport system inner membrane component DA442_24990 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase DA442_24995 PF13343 Bacterial extracellular solute-binding protein DA442_25000 PF00392 Bacterial regulatory proteins, gntR family DA442_25000 PF07702 UTRA domain DA442_25005 PF02028 BCCT family transporter DA442_25010 PF00703 Glycosyl hydrolases family 2 DA442_25015 PF00196 Bacterial regulatory proteins, luxR family DA442_25020 PF01381 Helix-turn-helix DA442_25025 PF00990 GGDEF domain DA442_25035 PF02321 Outer membrane efflux protein DA442_25040 PF00873 AcrB/AcrD/AcrF family DA442_25045 PF16576 DA442_25045 DA442_25050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_25050 PF03466 LysR substrate binding domain DA442_25060 PF13416 Bacterial extracellular solute-binding protein DA442_25065 PF00579 tRNA synthetases class I (W and Y) DA442_25070 PF00196 Bacterial regulatory proteins, luxR family DA442_25075 PF04366 DA442_25075 DA442_25085 PF00391 PEP-utilising enzyme, mobile domain DA442_25085 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DA442_25085 PF02896 PEP-utilising enzyme, TIM barrel domain DA442_25090 PF03618 DA442_25090 DA442_25095 PF00710 Asparaginase DA442_25100 PF00709 Adenylosuccinate synthetase DA442_25105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_25105 PF03466 LysR substrate binding domain DA442_25110 PF12614 DA442_25110 DA442_25115 PF01810 DA442_25115 DA442_25125 PF09831 DA442_25125 DA442_25135 PF12625 DA442_25135 DA442_25135 PF12833 Helix-turn-helix domain DA442_25140 PF13561 Enoyl-(Acyl carrier protein) reductase DA442_25145 PF12973 ChrR Cupin-like domain DA442_25150 PF00107 Zinc-binding dehydrogenase DA442_25150 PF08240 Alcohol dehydrogenase GroES-like domain DA442_25155 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DA442_25160 PF04399 Glutaredoxin 2, C terminal domain DA442_25160 PF13417 Glutathione S-transferase, N-terminal domain DA442_25165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_25165 PF03466 LysR substrate binding domain DA442_25170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_25170 PF03466 LysR substrate binding domain DA442_25175 PF17389 DA442_25175 DA442_25180 PF00270 DEAD/DEAH box helicase DA442_25180 PF00271 Helicase conserved C-terminal domain DA442_25185 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DA442_25190 PF00990 GGDEF domain DA442_25195 PF13641 Glycosyltransferase like family 2 DA442_25200 PF13437 HlyD family secretion protein DA442_25210 PF13698 DA442_25210 DA442_25225 PF00155 Aminotransferase class I and II DA442_25230 PF06445 GyrI-like small molecule binding domain DA442_25230 PF12833 Helix-turn-helix domain DA442_25235 PF14321 DA442_25235 DA442_25240 PF04325 Protein of unknown function (DUF465) DA442_25245 PF00892 EamA-like transporter family DA442_25250 PF12833 Helix-turn-helix domain DA442_25255 PF00246 Zinc carboxypeptidase DA442_25260 PF05661 DA442_25260 DA442_25265 PF01979 Amidohydrolase family DA442_25275 PF01679 DA442_25275 DA442_25285 PF00111 2Fe-2S iron-sulfur cluster binding domain DA442_25285 PF00175 Oxidoreductase NAD-binding domain DA442_25285 PF00970 Oxidoreductase FAD-binding domain DA442_25285 PF03473 MOSC domain DA442_25285 PF03476 MOSC N-terminal beta barrel domain DA442_25290 PF02540 NAD synthase DA442_25295 PF01467 Cytidylyltransferase DA442_25310 PF01553 Acyltransferase DA442_25320 PF07383 DA442_25320 DA442_25325 PF04175 Protein of unknown function (DUF406) DA442_25330 PF00440 Bacterial regulatory proteins, tetR family DA442_25335 PF00005 ABC transporter DA442_25340 PF01032 FecCD transport family DA442_25350 PF02472 Biopolymer transport protein ExbD/TolR DA442_25355 PF01618 DA442_25355 DA442_25360 PF03544 Gram-negative bacterial TonB protein C-terminal DA442_25365 PF04055 Radical SAM superfamily DA442_25370 PF06228 Haem utilisation ChuX/HutX DA442_25375 PF01243 Pyridoxamine 5'-phosphate oxidase DA442_25380 PF01923 Cobalamin adenosyltransferase DA442_25385 PF00072 Response regulator receiver domain DA442_25385 PF01584 CheW-like domain DA442_25395 PF13616 PPIC-type PPIASE domain DA442_25400 PF11840 DA442_25400 DA442_25410 PF05099 Tellurite resistance protein TerB DA442_25410 PF13208 DA442_25410 DA442_25410 PF15615 DA442_25410 DA442_25415 PF10923 DA442_25415 DA442_25420 PF00270 DEAD/DEAH box helicase DA442_25420 PF00271 Helicase conserved C-terminal domain DA442_25425 PF00082 Subtilase family DA442_25440 PF01292 Prokaryotic cytochrome b561 DA442_25445 PF00141 Peroxidase DA442_25450 PF00210 Ferritin-like domain DA442_25460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_25460 PF03466 LysR substrate binding domain DA442_25475 PF01752 Collagenase DA442_25475 PF04151 Bacterial pre-peptidase C-terminal domain DA442_25475 PF08453 Peptidase family M9 N-terminal DA442_25480 PF09016 Pas factor saposin fold DA442_25485 PF00128 Alpha amylase, catalytic domain DA442_25490 PF12840 Helix-turn-helix domain DA442_25505 PF02525 Flavodoxin-like fold DA442_25510 PF00582 Universal stress protein family DA442_25515 PF00005 ABC transporter DA442_25520 PF00326 Prolyl oligopeptidase family DA442_25520 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DA442_25530 PF13437 HlyD family secretion protein DA442_25530 PF13533 Biotin-lipoyl like DA442_25535 PF00873 AcrB/AcrD/AcrF family DA442_25540 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) DA442_25550 PF13302 Acetyltransferase (GNAT) domain DA442_25560 PF00990 GGDEF domain DA442_25560 PF01590 GAF domain DA442_25565 PF13354 Beta-lactamase enzyme family DA442_25580 PF00873 AcrB/AcrD/AcrF family DA442_25585 PF11604 Copper binding periplasmic protein CusF DA442_25585 PF16576 DA442_25585 DA442_25590 PF02321 Outer membrane efflux protein DA442_25605 PF00037 4Fe-4S binding domain DA442_25605 PF00384 Molybdopterin oxidoreductase DA442_25605 PF01568 Molydopterin dinucleotide binding domain DA442_25605 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DA442_25605 PF07992 Pyridine nucleotide-disulphide oxidoreductase DA442_25605 PF13510 2Fe-2S iron-sulfur cluster binding domain DA442_25605 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DA442_25610 PF03372 Endonuclease/Exonuclease/phosphatase family DA442_25620 PF12698 ABC-2 family transporter protein DA442_25625 PF00005 ABC transporter DA442_25630 PF13437 HlyD family secretion protein DA442_25635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_25635 PF12729 DA442_25635 DA442_25645 PF10282 Lactonase, 7-bladed beta-propeller DA442_25650 PF02567 Phenazine biosynthesis-like protein DA442_25655 PF01161 Phosphatidylethanolamine-binding protein DA442_25660 PF12833 Helix-turn-helix domain DA442_25665 PF01758 Sodium Bile acid symporter family DA442_25670 PF01022 Bacterial regulatory protein, arsR family DA442_25675 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DA442_25675 PF12793 DA442_25675 DA442_25685 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DA442_25690 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DA442_25690 PF02378 Phosphotransferase system, EIIC DA442_25695 PF00107 Zinc-binding dehydrogenase DA442_25695 PF08240 Alcohol dehydrogenase GroES-like domain DA442_25700 PF05068 Mannitol repressor DA442_25705 PF00485 Phosphoribulokinase / Uridine kinase family DA442_25720 PF13560 Helix-turn-helix domain DA442_25730 PF03222 Tryptophan/tyrosine permease family DA442_25740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_25740 PF00672 HAMP domain DA442_25740 PF02743 Cache domain DA442_25745 PF07670 Nucleoside recognition DA442_25755 PF06912 DA442_25755 DA442_25760 PF04828 Glutathione-dependent formaldehyde-activating enzyme DA442_25770 PF01551 Peptidase family M23 DA442_25770 PF04225 Opacity-associated protein A LysM-like domain DA442_25775 PF00563 EAL domain DA442_25775 PF00990 GGDEF domain DA442_25780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_25780 PF03466 LysR substrate binding domain DA442_25785 PF07690 Major Facilitator Superfamily DA442_25805 PF00462 Glutaredoxin DA442_25810 PF00892 EamA-like transporter family DA442_25815 PF13609 Gram-negative porin DA442_25820 PF13609 Gram-negative porin DA442_25825 PF01557 Fumarylacetoacetate (FAA) hydrolase family DA442_25830 PF05437 DA442_25830 DA442_25835 PF03591 DA442_25835 DA442_25840 PF02311 AraC-like ligand binding domain DA442_25840 PF12833 Helix-turn-helix domain DA442_25845 PF01810 DA442_25845 DA442_25850 PF00583 Acetyltransferase (GNAT) family DA442_25860 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DA442_25860 PF02790 Cytochrome C oxidase subunit II, transmembrane domain DA442_25860 PF13442 Cytochrome C oxidase, cbb3-type, subunit III DA442_25865 PF00115 Cytochrome C and Quinol oxidase polypeptide I DA442_25870 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 DA442_25875 PF00510 Cytochrome c oxidase subunit III DA442_25880 PF11137 DA442_25880 DA442_25885 PF02104 DA442_25885 DA442_25895 PF02628 DA442_25895 DA442_25900 PF01040 UbiA prenyltransferase family DA442_25905 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DA442_25905 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DA442_25910 PF13462 Thioredoxin DA442_25920 PF00691 OmpA family DA442_25925 PF00462 Glutaredoxin