locus-tag class description JHS88_00005 PF00308 Bacterial dnaA protein JHS88_00005 PF08299 Bacterial dnaA protein helix-turn-helix JHS88_00005 PF11638 DnaA N-terminal domain JHS88_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain JHS88_00010 PF02767 DNA polymerase III beta subunit, central domain JHS88_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain JHS88_00015 PF02463 RecF/RecN/SMC N terminal domain JHS88_00020 PF00204 DNA gyrase B JHS88_00020 PF00986 DNA gyrase B subunit, carboxyl terminus JHS88_00020 PF18053 DNA gyrase B subunit insert domain JHS88_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_00020 PF01751 Toprim domain JHS88_00030 PF00011 Hsp20/alpha crystallin family JHS88_00035 PF00155 Aminotransferase class I and II JHS88_00040 PF00128 Alpha amylase, catalytic domain JHS88_00045 PF05746 DALR anticodon binding domain JHS88_00045 PF02092 Glycyl-tRNA synthetase beta subunit JHS88_00050 PF02091 Glycyl-tRNA synthetase alpha subunit JHS88_00055 PF01169 Uncharacterized protein family UPF0016 JHS88_00065 PF01206 Sulfurtransferase TusA JHS88_00075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_00075 PF03466 LysR substrate binding domain JHS88_00080 PF00107 Zinc-binding dehydrogenase JHS88_00080 PF08240 Alcohol dehydrogenase GroES-like domain JHS88_00085 PF02803 Thiolase, C-terminal domain JHS88_00085 PF00108 Thiolase, N-terminal domain JHS88_00090 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JHS88_00090 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JHS88_00090 PF00378 Enoyl-CoA hydratase/isomerase JHS88_00095 PF09186 Domain of unknown function (DUF1949) JHS88_00095 PF01205 Uncharacterized protein family UPF0029 JHS88_00100 PF02386 Cation transport protein JHS88_00105 PF12724 Flavodoxin domain JHS88_00140 PF03466 LysR substrate binding domain JHS88_00140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_00145 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain JHS88_00145 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain JHS88_00150 PF04380 Membrane fusogenic activity JHS88_00155 PF00873 AcrB/AcrD/AcrF family JHS88_00160 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS88_00165 PF16295 Tetracyclin repressor-like, C-terminal domain JHS88_00165 PF00440 Bacterial regulatory proteins, tetR family JHS88_00170 PF13361 UvrD-like helicase C-terminal domain JHS88_00170 PF00580 UvrD/REP helicase N-terminal domain JHS88_00175 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JHS88_00205 PF13419 Haloacid dehalogenase-like hydrolase JHS88_00210 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS88_00210 PF00005 ABC transporter JHS88_00215 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JHS88_00220 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_00225 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_00225 PF12911 N-terminal TM domain of oligopeptide transport permease C JHS88_00255 PF00069 Protein kinase domain JHS88_00260 PF00356 Bacterial regulatory proteins, lacI family JHS88_00260 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JHS88_00265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_00265 PF03466 LysR substrate binding domain JHS88_00270 PF00893 Small Multidrug Resistance protein JHS88_00275 PF00893 Small Multidrug Resistance protein JHS88_00280 PF00920 Dehydratase family JHS88_00285 PF01202 Shikimate kinase JHS88_00290 PF02447 GntP family permease JHS88_00295 PF01081 KDPG and KHG aldolase JHS88_00300 PF01048 Phosphorylase superfamily JHS88_00305 PF03466 LysR substrate binding domain JHS88_00305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_00310 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS88_00310 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JHS88_00315 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ JHS88_00320 PF01432 Peptidase family M3 JHS88_00325 PF01037 Lrp/AsnC ligand binding domain JHS88_00330 PF00563 EAL domain JHS88_00330 PF00990 Diguanylate cyclase, GGDEF domain JHS88_00330 PF08448 PAS fold JHS88_00335 PF04445 Putative SAM-dependent methyltransferase JHS88_00345 PF00892 EamA-like transporter family JHS88_00350 PF00582 Universal stress protein family JHS88_00355 PF00210 Ferritin-like domain JHS88_00360 PF10625 Universal stress protein B (UspB) JHS88_00370 PF01590 GAF domain JHS88_00370 PF02954 Bacterial regulatory protein, Fis family JHS88_00370 PF00158 Sigma-54 interaction domain JHS88_00375 PF04972 BON domain JHS88_00395 PF00781 Diacylglycerol kinase catalytic domain JHS88_00425 PF01594 AI-2E family transporter JHS88_00430 PF00990 Diguanylate cyclase, GGDEF domain JHS88_00430 PF03707 Bacterial signalling protein N terminal repeat JHS88_00430 PF00563 EAL domain JHS88_00440 PF02646 RmuC family JHS88_00445 PF01209 ubiE/COQ5 methyltransferase family JHS88_00450 PF02036 SCP-2 sterol transfer family JHS88_00455 PF03109 ABC1 family JHS88_00460 PF02416 mttA/Hcf106 family JHS88_00465 PF02416 mttA/Hcf106 family JHS88_00470 PF00902 Sec-independent protein translocase protein (TatC) JHS88_00475 PF01026 TatD related DNase JHS88_00480 PF00490 Delta-aminolevulinic acid dehydratase JHS88_00495 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JHS88_00495 PF00476 DNA polymerase family A JHS88_00495 PF01612 3'-5' exonuclease JHS88_00495 PF01367 5'-3' exonuclease, C-terminal SAM fold JHS88_00500 PF01926 50S ribosome-binding GTPase JHS88_00505 PF00034 Cytochrome c JHS88_00515 PF04220 Der GTPase activator (YihI) JHS88_00520 PF10675 Protein of unknown function (DUF2489) JHS88_00525 PF06969 HemN C-terminal domain JHS88_00525 PF04055 Radical SAM superfamily JHS88_00530 PF00962 Adenosine/AMP deaminase JHS88_00535 PF00990 Diguanylate cyclase, GGDEF domain JHS88_00535 PF03707 Bacterial signalling protein N terminal repeat JHS88_00535 PF00563 EAL domain JHS88_00540 PF02954 Bacterial regulatory protein, Fis family JHS88_00540 PF00158 Sigma-54 interaction domain JHS88_00540 PF00072 Response regulator receiver domain JHS88_00545 PF00989 PAS fold JHS88_00545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_00545 PF00512 His Kinase A (phospho-acceptor) domain JHS88_00555 PF00120 Glutamine synthetase, catalytic domain JHS88_00555 PF03951 Glutamine synthetase, beta-Grasp domain JHS88_00560 PF00679 Elongation factor G C-terminus JHS88_00560 PF00009 Elongation factor Tu GTP binding domain JHS88_00560 PF03144 Elongation factor Tu domain 2 JHS88_00575 PF03631 Virulence factor BrkB JHS88_00580 PF02580 D-Tyr-tRNA(Tyr) deacylase JHS88_00585 PF00583 Acetyltransferase (GNAT) family JHS88_00585 PF09500 Putative thioesterase (yiiD_Cterm) JHS88_00595 PF01293 Phosphoenolpyruvate carboxykinase JHS88_00600 PF01430 Hsp33 protein JHS88_00605 PF01479 S4 domain JHS88_00610 PF11356 Type II secretion system protein C JHS88_00615 PF03958 Bacterial type II/III secretion system short domain JHS88_00615 PF00263 Bacterial type II and III secretion system protein JHS88_00620 PF00437 Type II/IV secretion system protein JHS88_00625 PF00482 Type II secretion system (T2SS), protein F JHS88_00630 PF07963 Prokaryotic N-terminal methylation motif JHS88_00630 PF08334 Type II secretion system (T2SS), protein G JHS88_00635 PF12019 Type II transport protein GspH JHS88_00640 PF07963 Prokaryotic N-terminal methylation motif JHS88_00640 PF02501 Type II secretion system (T2SS), protein I JHS88_00645 PF07963 Prokaryotic N-terminal methylation motif JHS88_00645 PF11612 Type II secretion system (T2SS), protein J JHS88_00650 PF03934 Type II secretion system (T2SS), protein K JHS88_00655 PF05134 Type II secretion system (T2SS), protein L JHS88_00655 PF12693 GspL periplasmic domain JHS88_00660 PF04612 Type II secretion system (T2SS), protein M JHS88_00665 PF01203 Type II secretion system (T2SS), protein N JHS88_00670 PF00459 Inositol monophosphatase family JHS88_00675 PF00293 NUDIX domain JHS88_00680 PF01106 NifU-like domain JHS88_00680 PF01521 Iron-sulphur cluster biosynthesis JHS88_00685 PF00156 Phosphoribosyl transferase domain JHS88_00690 PF00561 alpha/beta hydrolase fold JHS88_00700 PF00575 S1 RNA binding domain JHS88_00700 PF09371 Tex-like protein N-terminal domain JHS88_00700 PF16921 Tex protein YqgF-like domain JHS88_00700 PF17674 HHH domain JHS88_00710 PF01272 Transcription elongation factor, GreA/GreB, C-term JHS88_00710 PF03449 Transcription elongation factor, N-terminal JHS88_00720 PF00486 Transcriptional regulatory protein, C terminal JHS88_00720 PF00072 Response regulator receiver domain JHS88_00725 PF00512 His Kinase A (phospho-acceptor) domain JHS88_00725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_00725 PF00672 HAMP domain JHS88_00730 PF00860 Permease family JHS88_00735 PF17191 RecG wedge domain JHS88_00735 PF00271 Helicase conserved C-terminal domain JHS88_00735 PF00270 DEAD/DEAH box helicase JHS88_00740 PF00588 SpoU rRNA Methylase family JHS88_00740 PF12105 SpoU, rRNA methylase, C-terminal JHS88_00745 PF13291 ACT domain JHS88_00745 PF04607 Region found in RelA / SpoT proteins JHS88_00745 PF02824 TGS domain JHS88_00750 PF01192 RNA polymerase Rpb6 JHS88_00755 PF00625 Guanylate kinase JHS88_00775 PF02472 Biopolymer transport protein ExbD/TolR JHS88_00780 PF01618 MotA/TolQ/ExbB proton channel family JHS88_00795 PF07715 TonB-dependent Receptor Plug Domain JHS88_00795 PF00593 TonB dependent receptor JHS88_00800 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_00810 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JHS88_00815 PF00005 ABC transporter JHS88_00815 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS88_00820 PF00005 ABC transporter JHS88_00820 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS88_00830 PF08340 Domain of unknown function (DUF1732) JHS88_00830 PF03755 YicC-like family, N-terminal region JHS88_00835 PF03725 3' exoribonuclease family, domain 2 JHS88_00835 PF01138 3' exoribonuclease family, domain 1 JHS88_00840 PF00156 Phosphoribosyl transferase domain JHS88_00845 PF03279 Bacterial lipid A biosynthesis acyltransferase JHS88_00850 PF00440 Bacterial regulatory proteins, tetR family JHS88_00855 PF02441 Flavoprotein JHS88_00855 PF04127 DNA / pantothenate metabolism flavoprotein JHS88_00860 PF00672 HAMP domain JHS88_00860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS88_00860 PF17200 Single Cache domain 2 JHS88_00865 PF04002 RadC-like JAB domain JHS88_00870 PF00830 Ribosomal L28 family JHS88_00875 PF00471 Ribosomal protein L33 JHS88_00880 PF00884 Sulfatase JHS88_00890 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JHS88_00890 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JHS88_00890 PF06827 Zinc finger found in FPG and IleRS JHS88_00895 PF01467 Cytidylyltransferase-like JHS88_00900 PF05686 Glycosyl transferase family 90 JHS88_00905 PF00535 Glycosyl transferase family 2 JHS88_00910 PF00535 Glycosyl transferase family 2 JHS88_00915 PF01075 Glycosyltransferase family 9 (heptosyltransferase) JHS88_00920 PF01219 Prokaryotic diacylglycerol kinase JHS88_00930 PF02719 Polysaccharide biosynthesis protein JHS88_00935 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JHS88_00940 PF02350 UDP-N-acetylglucosamine 2-epimerase JHS88_00945 PF03102 NeuB family JHS88_00945 PF08666 SAF domain JHS88_00955 PF00483 Nucleotidyl transferase JHS88_00960 PF02348 Cytidylyltransferase JHS88_00960 PF13472 GDSL-like Lipase/Acylhydrolase family JHS88_00970 PF00202 Aminotransferase class-III JHS88_00975 PF00795 Carbon-nitrogen hydrolase JHS88_01000 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) JHS88_01005 PF01075 Glycosyltransferase family 9 (heptosyltransferase) JHS88_01010 PF03279 Bacterial lipid A biosynthesis acyltransferase JHS88_01015 PF01370 NAD dependent epimerase/dehydratase family JHS88_01020 PF06082 Exopolysaccharide biosynthesis protein YbjH JHS88_01055 PF16363 GDP-mannose 4,6 dehydratase JHS88_01060 PF00483 Nucleotidyl transferase JHS88_01065 PF04321 RmlD substrate binding domain JHS88_01070 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase JHS88_01075 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JHS88_01075 PF01565 FAD binding domain JHS88_01090 PF01501 Glycosyl transferase family 8 JHS88_01100 PF00535 Glycosyl transferase family 2 JHS88_01100 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 JHS88_01105 PF00534 Glycosyl transferases group 1 JHS88_01105 PF09318 Glycosyl transferase 1 domain A JHS88_01110 PF00535 Glycosyl transferase family 2 JHS88_01115 PF00132 Bacterial transferase hexapeptide (six repeats) JHS88_01135 PF00953 Glycosyl transferase family 4 JHS88_01140 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JHS88_01140 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JHS88_01140 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JHS88_01145 PF00483 Nucleotidyl transferase JHS88_01150 PF00753 Metallo-beta-lactamase superfamily JHS88_01150 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain JHS88_01150 PF10996 Beta-Casp domain JHS88_01155 PF00121 Triosephosphate isomerase JHS88_01175 PF00455 DeoR C terminal sensor domain JHS88_01175 PF08220 DeoR-like helix-turn-helix domain JHS88_01180 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded JHS88_01185 PF06005 Cell division protein ZapB JHS88_01190 PF03737 Aldolase/RraA JHS88_01195 PF01040 UbiA prenyltransferase family JHS88_01200 PF00004 ATPase family associated with various cellular activities (AAA) JHS88_01200 PF07724 AAA domain (Cdc48 subfamily) JHS88_01205 PF00227 Proteasome subunit JHS88_01215 PF00356 Bacterial regulatory proteins, lacI family JHS88_01220 PF18319 PriA DNA helicase Cys-rich region (CRR) domain JHS88_01220 PF18074 Primosomal protein N C-terminal domain JHS88_01220 PF00270 DEAD/DEAH box helicase JHS88_01220 PF00271 Helicase conserved C-terminal domain JHS88_01220 PF17764 3′ DNA-binding domain (3′BD) JHS88_01225 PF01197 Ribosomal protein L31 JHS88_01230 PF00338 Ribosomal protein S10p/S20e JHS88_01235 PF00297 Ribosomal protein L3 JHS88_01240 PF00573 Ribosomal protein L4/L1 family JHS88_01245 PF00276 Ribosomal protein L23 JHS88_01250 PF00181 Ribosomal Proteins L2, RNA binding domain JHS88_01250 PF03947 Ribosomal Proteins L2, C-terminal domain JHS88_01255 PF00203 Ribosomal protein S19 JHS88_01260 PF00237 Ribosomal protein L22p/L17e JHS88_01265 PF00189 Ribosomal protein S3, C-terminal domain JHS88_01265 PF07650 KH domain JHS88_01270 PF00252 Ribosomal protein L16p/L10e JHS88_01275 PF00831 Ribosomal L29 protein JHS88_01280 PF00366 Ribosomal protein S17 JHS88_01285 PF00238 Ribosomal protein L14p/L23e JHS88_01290 PF00467 KOW motif JHS88_01290 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JHS88_01295 PF00281 Ribosomal protein L5 JHS88_01295 PF00673 ribosomal L5P family C-terminus JHS88_01300 PF00253 Ribosomal protein S14p/S29e JHS88_01305 PF00410 Ribosomal protein S8 JHS88_01310 PF00347 Ribosomal protein L6 JHS88_01315 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JHS88_01320 PF00333 Ribosomal protein S5, N-terminal domain JHS88_01320 PF03719 Ribosomal protein S5, C-terminal domain JHS88_01325 PF00327 Ribosomal protein L30p/L7e JHS88_01330 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A JHS88_01335 PF00344 SecY translocase JHS88_01340 PF00444 Ribosomal protein L36 JHS88_01345 PF00416 Ribosomal protein S13/S18 JHS88_01350 PF00411 Ribosomal protein S11 JHS88_01355 PF00163 Ribosomal protein S4/S9 N-terminal domain JHS88_01355 PF01479 S4 domain JHS88_01360 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain JHS88_01360 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain JHS88_01360 PF01000 RNA polymerase Rpb3/RpoA insert domain JHS88_01365 PF01196 Ribosomal protein L17 JHS88_01375 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JHS88_01375 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JHS88_01385 PF13673 Acetyltransferase (GNAT) domain JHS88_01390 PF03880 DbpA RNA binding domain JHS88_01390 PF00270 DEAD/DEAH box helicase JHS88_01390 PF00271 Helicase conserved C-terminal domain JHS88_01400 PF02872 5'-nucleotidase, C-terminal domain JHS88_01400 PF00149 Calcineurin-like phosphoesterase JHS88_01405 PF10414 Sirohaem synthase dimerisation region JHS88_01405 PF14824 Sirohaem biosynthesis protein central JHS88_01405 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JHS88_01410 PF01507 Phosphoadenosine phosphosulfate reductase family JHS88_01415 PF00009 Elongation factor Tu GTP binding domain JHS88_01420 PF02080 TrkA-C domain JHS88_01420 PF03600 Citrate transporter JHS88_01445 PF00005 ABC transporter JHS88_01455 PF10795 Protein of unknown function (DUF2607) JHS88_01460 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) JHS88_01465 PF06526 Protein of unknown function (DUF1107) JHS88_01470 PF01625 Peptide methionine sulfoxide reductase JHS88_01475 PF01103 Surface antigen JHS88_01475 PF17243 POTRA domain TamA domain 1 JHS88_01480 PF04357 TamB, inner membrane protein subunit of TAM complex JHS88_01485 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like JHS88_01495 PF00719 Inorganic pyrophosphatase JHS88_01500 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain JHS88_01505 PF01225 Mur ligase family, catalytic domain JHS88_01505 PF02875 Mur ligase family, glutamate ligase domain JHS88_01505 PF08245 Mur ligase middle domain JHS88_01510 PF02441 Flavoprotein JHS88_01520 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_01525 PF00005 ABC transporter JHS88_01540 PF16868 NMT1-like family JHS88_01545 PF01316 Arginine repressor, DNA binding domain JHS88_01545 PF02863 Arginine repressor, C-terminal domain JHS88_01550 PF00056 lactate/malate dehydrogenase, NAD binding domain JHS88_01550 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JHS88_01560 PF00348 Polyprenyl synthetase JHS88_01565 PF00829 Ribosomal prokaryotic L21 protein JHS88_01570 PF01016 Ribosomal L27 protein JHS88_01575 PF01018 GTP1/OBG JHS88_01575 PF01926 50S ribosome-binding GTPase JHS88_01580 PF06738 Putative threonine/serine exporter JHS88_01585 PF12821 Threonine/Serine exporter, ThrE JHS88_01590 PF00186 Dihydrofolate reductase JHS88_01595 PF00149 Calcineurin-like phosphoesterase JHS88_01600 PF04379 ApaG domain JHS88_01605 PF00398 Ribosomal RNA adenine dimethylase JHS88_01610 PF04166 Pyridoxal phosphate biosynthetic protein PdxA JHS88_01615 PF09312 SurA N-terminal domain JHS88_01625 PF00226 DnaJ domain JHS88_01625 PF05099 Tellurite resistance protein TerB JHS88_01635 PF00694 Aconitase C-terminal domain JHS88_01660 PF01569 PAP2 superfamily JHS88_01670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_01670 PF03466 LysR substrate binding domain JHS88_01675 PF00501 AMP-binding enzyme JHS88_01680 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JHS88_01680 PF00205 Thiamine pyrophosphate enzyme, central domain JHS88_01680 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JHS88_01685 PF10369 Small subunit of acetolactate synthase JHS88_01690 PF00990 Diguanylate cyclase, GGDEF domain JHS88_01700 PF02887 Pyruvate kinase, alpha/beta domain JHS88_01700 PF00224 Pyruvate kinase, barrel domain JHS88_01705 PF08220 DeoR-like helix-turn-helix domain JHS88_01705 PF00455 DeoR C terminal sensor domain JHS88_01710 PF01380 SIS domain JHS88_01720 PF00486 Transcriptional regulatory protein, C terminal JHS88_01720 PF00072 Response regulator receiver domain JHS88_01725 PF00672 HAMP domain JHS88_01725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_01725 PF00512 His Kinase A (phospho-acceptor) domain JHS88_01730 PF13419 Haloacid dehalogenase-like hydrolase JHS88_01735 PF05068 Mannitol repressor JHS88_01740 PF01232 Mannitol dehydrogenase Rossmann domain JHS88_01740 PF08125 Mannitol dehydrogenase C-terminal domain JHS88_01745 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JHS88_01745 PF02378 Phosphotransferase system, EIIC JHS88_01745 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JHS88_01775 PF03180 NLPA lipoprotein JHS88_01815 PF01420 Type I restriction modification DNA specificity domain JHS88_01820 PF12161 HsdM N-terminal domain JHS88_01820 PF02384 N-6 DNA Methylase JHS88_01840 PF01555 DNA methylase JHS88_01845 PF08463 EcoEI R protein C-terminal JHS88_01845 PF00271 Helicase conserved C-terminal domain JHS88_01845 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) JHS88_01845 PF04851 Type III restriction enzyme, res subunit JHS88_01875 PF13657 HipA N-terminal domain JHS88_01875 PF07804 HipA-like C-terminal domain JHS88_01890 PF04545 Sigma-70, region 4 JHS88_01890 PF04542 Sigma-70 region 2 JHS88_01890 PF00140 Sigma-70 factor, region 1.2 JHS88_01890 PF03979 Sigma-70 factor, region 1.1 JHS88_01890 PF04539 Sigma-70 region 3 JHS88_01890 PF04546 Sigma-70, non-essential region JHS88_01895 PF01807 CHC2 zinc finger JHS88_01895 PF08278 DNA primase DnaG DnaB-binding JHS88_01895 PF10410 DnaB-helicase binding domain of primase JHS88_01895 PF08275 DNA primase catalytic core, N-terminal domain JHS88_01900 PF09424 Yqey-like protein JHS88_01905 PF01165 Ribosomal protein S21 JHS88_01910 PF00814 Glycoprotease family JHS88_01915 PF12697 Alpha/beta hydrolase family JHS88_01920 PF02660 Glycerol-3-phosphate acyltransferase JHS88_01925 PF02152 Dihydroneopterin aldolase JHS88_01930 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JHS88_01935 PF02673 Bacitracin resistance protein BacA JHS88_01940 PF12627 Probable RNA and SrmB- binding site of polymerase A JHS88_01940 PF01743 Poly A polymerase head domain JHS88_01940 PF01966 HD domain JHS88_01945 PF13401 AAA domain JHS88_01945 PF01471 Putative peptidoglycan binding domain JHS88_01955 PF08239 Bacterial SH3 domain JHS88_01960 PF01384 Phosphate transporter family JHS88_01965 PF01865 Protein of unknown function DUF47 JHS88_01970 PF01928 CYTH domain JHS88_01980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS88_01980 PF00672 HAMP domain JHS88_01985 PF08335 GlnD PII-uridylyltransferase JHS88_01985 PF03710 Glutamate-ammonia ligase adenylyltransferase JHS88_01990 PF01467 Cytidylyltransferase-like JHS88_01990 PF00294 pfkB family carbohydrate kinase JHS88_01995 PF02321 Outer membrane efflux protein JHS88_02000 PF00293 NUDIX domain JHS88_02005 PF06853 Protein of unknown function (DUF1249) JHS88_02010 PF00149 Calcineurin-like phosphoesterase JHS88_02015 PF05728 Uncharacterised protein family (UPF0227) JHS88_02020 PF01751 Toprim domain JHS88_02020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_02020 PF00204 DNA gyrase B JHS88_02020 PF00986 DNA gyrase B subunit, carboxyl terminus JHS88_02025 PF03989 DNA gyrase C-terminal domain, beta-propeller JHS88_02025 PF00521 DNA gyrase/topoisomerase IV, subunit A JHS88_02030 PF13180 PDZ domain JHS88_02035 PF00595 PDZ domain JHS88_02040 PF06295 Protein of unknown function (DUF1043) JHS88_02045 PF03969 AFG1-like ATPase JHS88_02050 PF00572 Ribosomal protein L13 JHS88_02055 PF00380 Ribosomal protein S9/S16 JHS88_02060 PF00355 Rieske [2Fe-2S] domain JHS88_02060 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal JHS88_02065 PF00032 Cytochrome b(C-terminal)/b6/petD JHS88_02065 PF00033 Cytochrome b/b6/petB JHS88_02070 PF02167 Cytochrome C1 family JHS88_02075 PF00043 Glutathione S-transferase, C-terminal domain JHS88_02075 PF02798 Glutathione S-transferase, N-terminal domain JHS88_02080 PF04386 Stringent starvation protein B JHS88_02085 PF04972 BON domain JHS88_02090 PF13580 SIS domain JHS88_02095 PF02021 Uncharacterised protein family UPF0102 JHS88_02100 PF04348 LppC putative lipoprotein JHS88_02105 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JHS88_02115 PF01795 MraW methylase family JHS88_02120 PF04999 Cell division protein FtsL JHS88_02125 PF03717 Penicillin-binding Protein dimerisation domain JHS88_02125 PF00905 Penicillin binding protein transpeptidase domain JHS88_02130 PF08245 Mur ligase middle domain JHS88_02130 PF01225 Mur ligase family, catalytic domain JHS88_02130 PF02875 Mur ligase family, glutamate ligase domain JHS88_02135 PF01225 Mur ligase family, catalytic domain JHS88_02135 PF08245 Mur ligase middle domain JHS88_02135 PF02875 Mur ligase family, glutamate ligase domain JHS88_02140 PF00953 Glycosyl transferase family 4 JHS88_02140 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 JHS88_02145 PF08245 Mur ligase middle domain JHS88_02145 PF02875 Mur ligase family, glutamate ligase domain JHS88_02150 PF01098 Cell cycle protein JHS88_02155 PF03033 Glycosyltransferase family 28 N-terminal domain JHS88_02155 PF04101 Glycosyltransferase family 28 C-terminal domain JHS88_02160 PF08245 Mur ligase middle domain JHS88_02160 PF02875 Mur ligase family, glutamate ligase domain JHS88_02160 PF01225 Mur ligase family, catalytic domain JHS88_02165 PF08478 POTRA domain, FtsQ-type JHS88_02165 PF03799 Cell division protein FtsQ JHS88_02170 PF02491 SHS2 domain inserted in FTSA JHS88_02175 PF00091 Tubulin/FtsZ family, GTPase domain JHS88_02175 PF12327 FtsZ family, C-terminal domain JHS88_02180 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase JHS88_02190 PF02810 SEC-C motif JHS88_02190 PF07517 SecA DEAD-like domain JHS88_02190 PF01043 SecA preprotein cross-linking domain JHS88_02190 PF07516 SecA Wing and Scaffold domain JHS88_02195 PF00293 NUDIX domain JHS88_02200 PF05173 Dihydrodipicolinate reductase, C-terminus JHS88_02200 PF01113 Dihydrodipicolinate reductase, N-terminus JHS88_02205 PF00117 Glutamine amidotransferase class-I JHS88_02205 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain JHS88_02210 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JHS88_02210 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain JHS88_02210 PF02142 MGS-like domain JHS88_02225 PF01925 Sulfite exporter TauE/SafE JHS88_02230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_02230 PF03466 LysR substrate binding domain JHS88_02235 PF03458 UPF0126 domain JHS88_02240 PF01497 Periplasmic binding protein JHS88_02245 PF17113 Regulatory signalling modulator protein AmpE JHS88_02245 PF03186 CobD/Cbib protein JHS88_02250 PF01048 Phosphorylase superfamily JHS88_02260 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS88_02260 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JHS88_02265 PF01645 Conserved region in glutamate synthase JHS88_02265 PF01493 GXGXG motif JHS88_02265 PF04898 Glutamate synthase central domain JHS88_02265 PF00310 Glutamine amidotransferases class-II JHS88_02270 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JHS88_02270 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS88_02275 PF01645 Conserved region in glutamate synthase JHS88_02275 PF04898 Glutamate synthase central domain JHS88_02275 PF01493 GXGXG motif JHS88_02275 PF00310 Glutamine amidotransferases class-II JHS88_02280 PF04055 Radical SAM superfamily JHS88_02280 PF16199 Radical_SAM C-terminal domain JHS88_02285 PF00360 Phytochrome region JHS88_02285 PF01590 GAF domain JHS88_02285 PF00563 EAL domain JHS88_02285 PF00990 Diguanylate cyclase, GGDEF domain JHS88_02290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_02290 PF18415 Histidine kinase receptor ArcB trans-membrane domain JHS88_02290 PF01627 Hpt domain JHS88_02290 PF00989 PAS fold JHS88_02290 PF00072 Response regulator receiver domain JHS88_02290 PF00512 His Kinase A (phospho-acceptor) domain JHS88_02300 PF00072 Response regulator receiver domain JHS88_02300 PF00486 Transcriptional regulatory protein, C terminal JHS88_02310 PF03737 Aldolase/RraA JHS88_02320 PF03447 Homoserine dehydrogenase, NAD binding domain JHS88_02320 PF00742 Homoserine dehydrogenase JHS88_02320 PF00696 Amino acid kinase family JHS88_02320 PF13840 ACT domain JHS88_02320 PF01842 ACT domain JHS88_02325 PF08544 GHMP kinases C terminal JHS88_02325 PF00288 GHMP kinases N terminal domain JHS88_02330 PF00291 Pyridoxal-phosphate dependent enzyme JHS88_02330 PF14821 Threonine synthase N terminus JHS88_02335 PF01228 Glycine radical JHS88_02340 PF01261 Xylose isomerase-like TIM barrel JHS88_02345 PF03167 Uracil DNA glycosylase superfamily JHS88_02360 PF01235 Sodium:alanine symporter family JHS88_02365 PF03883 Peroxide stress protein YaaA JHS88_02370 PF00271 Helicase conserved C-terminal domain JHS88_02370 PF00270 DEAD/DEAH box helicase JHS88_02375 PF05175 Methyltransferase small domain JHS88_02380 PF05525 Branched-chain amino acid transport protein JHS88_02385 PF00258 Flavodoxin JHS88_02390 PF02899 Phage integrase, N-terminal SAM-like domain JHS88_02390 PF00589 Phage integrase family JHS88_02395 PF13098 Thioredoxin-like domain JHS88_02395 PF10411 Disulfide bond isomerase protein N-terminus JHS88_02400 PF01368 DHH family JHS88_02400 PF02272 DHHA1 domain JHS88_02400 PF17768 RecJ OB domain JHS88_02410 PF00152 tRNA synthetases class II (D, K and N) JHS88_02410 PF01336 OB-fold nucleic acid binding domain JHS88_02415 PF02954 Bacterial regulatory protein, Fis family JHS88_02415 PF00072 Response regulator receiver domain JHS88_02415 PF00158 Sigma-54 interaction domain JHS88_02425 PF00248 Aldo/keto reductase family JHS88_02435 PF02976 DNA mismatch repair enzyme MutH JHS88_02440 PF00293 NUDIX domain JHS88_02445 PF02896 PEP-utilising enzyme, TIM barrel domain JHS88_02445 PF00391 PEP-utilising enzyme, mobile domain JHS88_02445 PF05524 PEP-utilising enzyme, N-terminal JHS88_02445 PF01590 GAF domain JHS88_02450 PF01925 Sulfite exporter TauE/SafE JHS88_02455 PF01790 Prolipoprotein diacylglyceryl transferase JHS88_02460 PF00303 Thymidylate synthase JHS88_02470 PF02690 Na+/Pi-cotransporter JHS88_02475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_02475 PF03466 LysR substrate binding domain JHS88_02480 PF01022 Bacterial regulatory protein, arsR family JHS88_02485 PF01649 Ribosomal protein S20 JHS88_02490 PF03023 Lipid II flippase MurJ JHS88_02495 PF06574 FAD synthetase JHS88_02495 PF01687 Riboflavin kinase JHS88_02500 PF06827 Zinc finger found in FPG and IleRS JHS88_02500 PF08264 Anticodon-binding domain of tRNA JHS88_02500 PF00133 tRNA synthetases class I (I, L, M and V) JHS88_02505 PF01252 Signal peptidase (SPase) II JHS88_02510 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JHS88_02515 PF02401 LytB protein JHS88_02520 PF00072 Response regulator receiver domain JHS88_02520 PF04397 LytTr DNA-binding domain JHS88_02525 PF06580 Histidine kinase JHS88_02525 PF07694 5TMR of 5TMR-LYT JHS88_02530 PF02554 Carbon starvation protein CstA JHS88_02545 PF13580 SIS domain JHS88_02550 PF03702 Anhydro-N-acetylmuramic acid kinase JHS88_02555 PF00933 Glycosyl hydrolase family 3 N terminal domain JHS88_02560 PF00793 DAHP synthetase I family JHS88_02565 PF02153 Prephenate dehydrogenase JHS88_02565 PF01817 Chorismate mutase type II JHS88_02570 PF04225 Opacity-associated protein A LysM-like domain JHS88_02570 PF01551 Peptidase family M23 JHS88_02575 PF07238 PilZ domain JHS88_02580 PF00005 ABC transporter JHS88_02580 PF12848 ABC transporter JHS88_02585 PF01464 Transglycosylase SLT domain JHS88_02585 PF14718 Soluble lytic murein transglycosylase L domain JHS88_02590 PF01371 Trp repressor protein JHS88_02595 PF01931 Protein of unknown function DUF84 JHS88_02600 PF01817 Chorismate mutase type II JHS88_02600 PF00800 Prephenate dehydratase JHS88_02605 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JHS88_02610 PF01464 Transglycosylase SLT domain JHS88_02615 PF13525 Outer membrane lipoprotein JHS88_02620 PF00849 RNA pseudouridylate synthase JHS88_02620 PF01479 S4 domain JHS88_02625 PF02578 Multi-copper polyphenol oxidoreductase laccase JHS88_02630 PF10431 C-terminal, D2-small domain, of ClpB protein JHS88_02630 PF00004 ATPase family associated with various cellular activities (AAA) JHS88_02630 PF07724 AAA domain (Cdc48 subfamily) JHS88_02630 PF17871 AAA lid domain JHS88_02630 PF02861 Clp amino terminal domain, pathogenicity island component JHS88_02675 PF03411 Penicillin-insensitive murein endopeptidase JHS88_02685 PF00037 4Fe-4S binding domain JHS88_02690 PF16325 Peptidase family U32 C-terminal domain JHS88_02690 PF01136 Peptidase family U32 JHS88_02695 PF04381 Putative exonuclease, RdgC JHS88_02700 PF00072 Response regulator receiver domain JHS88_02700 PF00486 Transcriptional regulatory protein, C terminal JHS88_02705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_02705 PF00512 His Kinase A (phospho-acceptor) domain JHS88_02705 PF00989 PAS fold JHS88_02705 PF11808 Phosphate regulon sensor protein PhoR JHS88_02710 PF12849 PBP superfamily domain JHS88_02715 PF02541 Ppx/GppA phosphatase family JHS88_02720 PF13089 Polyphosphate kinase N-terminal domain JHS88_02720 PF13090 Polyphosphate kinase C-terminal domain 2 JHS88_02720 PF17941 Polyphosphate kinase C-terminal domain 1 JHS88_02720 PF02503 Polyphosphate kinase middle domain JHS88_02725 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_02730 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_02735 PF00005 ABC transporter JHS88_02740 PF01895 PhoU domain JHS88_02745 PF03976 Polyphosphate kinase 2 (PPK2) JHS88_02750 PF03932 CutC family JHS88_02755 PF10417 C-terminal domain of 1-Cys peroxiredoxin JHS88_02755 PF00578 AhpC/TSA family JHS88_02760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_02760 PF03466 LysR substrate binding domain JHS88_02765 PF01274 Malate synthase JHS88_02770 PF00463 Isocitrate lyase family JHS88_02775 PF00571 CBS domain JHS88_02785 PF02547 Queuosine biosynthesis protein JHS88_02790 PF01702 Queuine tRNA-ribosyltransferase JHS88_02795 PF02699 Preprotein translocase subunit JHS88_02800 PF07549 SecD/SecF GG Motif JHS88_02800 PF13721 SecD export protein N-terminal TM region JHS88_02800 PF02355 Protein export membrane protein JHS88_02805 PF07549 SecD/SecF GG Motif JHS88_02805 PF02355 Protein export membrane protein JHS88_02810 PF00459 Inositol monophosphatase family JHS88_02815 PF00588 SpoU rRNA Methylase family JHS88_02820 PF02082 Transcriptional regulator JHS88_02825 PF00266 Aminotransferase class-V JHS88_02830 PF01592 NifU-like N terminal domain JHS88_02835 PF01521 Iron-sulphur cluster biosynthesis JHS88_02840 PF00226 DnaJ domain JHS88_02840 PF07743 HSCB C-terminal oligomerisation domain JHS88_02845 PF00012 Hsp70 protein JHS88_02850 PF00111 2Fe-2S iron-sulfur cluster binding domain JHS88_02855 PF04384 Iron-sulphur cluster assembly JHS88_02860 PF12404 Peptidase JHS88_02860 PF00883 Cytosol aminopeptidase family, catalytic domain JHS88_02865 PF00334 Nucleoside diphosphate kinase JHS88_02870 PF04055 Radical SAM superfamily JHS88_02875 PF13464 Domain of unknown function (DUF4115) JHS88_02880 PF04551 GcpE protein JHS88_02885 PF03129 Anticodon binding domain JHS88_02885 PF13393 Histidyl-tRNA synthetase JHS88_02890 PF09976 Tetratricopeptide repeat-like domain JHS88_02895 PF13360 PQQ-like domain JHS88_02900 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JHS88_02900 PF01926 50S ribosome-binding GTPase JHS88_02915 PF13742 OB-fold nucleic acid binding domain JHS88_02915 PF02601 Exonuclease VII, large subunit JHS88_02920 PF00478 IMP dehydrogenase / GMP reductase domain JHS88_02920 PF00571 CBS domain JHS88_02925 PF00117 Glutamine amidotransferase class-I JHS88_02925 PF00958 GMP synthase C terminal domain JHS88_02925 PF02540 NAD synthase JHS88_02930 PF03553 Na+/H+ antiporter family JHS88_02935 PF06483 Chitinase C JHS88_02935 PF00704 Glycosyl hydrolases family 18 JHS88_02940 PF01184 GPR1/FUN34/yaaH family JHS88_02950 PF01235 Sodium:alanine symporter family JHS88_02955 PF01266 FAD dependent oxidoreductase JHS88_02960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_02960 PF03466 LysR substrate binding domain JHS88_02975 PF07969 Amidohydrolase family JHS88_02980 PF01053 Cys/Met metabolism PLP-dependent enzyme JHS88_02985 PF00202 Aminotransferase class-III JHS88_03005 PF00795 Carbon-nitrogen hydrolase JHS88_03005 PF00583 Acetyltransferase (GNAT) family JHS88_03010 PF03466 LysR substrate binding domain JHS88_03010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_03055 PF14659 Phage integrase, N-terminal SAM-like domain JHS88_03055 PF00589 Phage integrase family JHS88_03065 PF01668 SmpB protein JHS88_03070 PF03364 Polyketide cyclase / dehydrase and lipid transport JHS88_03075 PF03658 RnfH family Ubiquitin JHS88_03080 PF04355 SmpA / OmlA family JHS88_03085 PF02463 RecF/RecN/SMC N terminal domain JHS88_03095 PF01513 ATP-NAD kinase JHS88_03100 PF01025 GrpE JHS88_03105 PF00375 Sodium:dicarboxylate symporter family JHS88_03110 PF00012 Hsp70 protein JHS88_03115 PF01556 DnaJ C terminal domain JHS88_03115 PF00684 DnaJ central domain JHS88_03115 PF00226 DnaJ domain JHS88_03120 PF07963 Prokaryotic N-terminal methylation motif JHS88_03120 PF00114 Pilin (bacterial filament) JHS88_03125 PF07963 Prokaryotic N-terminal methylation motif JHS88_03125 PF00114 Pilin (bacterial filament) JHS88_03145 PF03806 AbgT putative transporter family JHS88_03150 PF14437 MafB19-like deaminase JHS88_03155 PF01464 Transglycosylase SLT domain JHS88_03155 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS88_03160 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain JHS88_03160 PF02769 AIR synthase related protein, C-terminal domain JHS88_03160 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal JHS88_03185 PF01546 Peptidase family M20/M25/M40 JHS88_03185 PF07687 Peptidase dimerisation domain JHS88_03190 PF00860 Permease family JHS88_03195 PF00156 Phosphoribosyl transferase domain JHS88_03200 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) JHS88_03205 PF07417 Sigma factor-binding transcriptional regulator Crl JHS88_03210 PF01472 PUA domain JHS88_03210 PF00696 Amino acid kinase family JHS88_03215 PF00171 Aldehyde dehydrogenase family JHS88_03220 PF03477 ATP cone domain JHS88_03225 PF01872 RibD C-terminal domain JHS88_03225 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JHS88_03230 PF00677 Lumazine binding domain JHS88_03235 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JHS88_03235 PF00925 GTP cyclohydrolase II JHS88_03240 PF00885 6,7-dimethyl-8-ribityllumazine synthase JHS88_03245 PF01029 NusB family JHS88_03250 PF00586 AIR synthase related protein, N-terminal domain JHS88_03250 PF02769 AIR synthase related protein, C-terminal domain JHS88_03255 PF04608 Phosphatidylglycerophosphatase A JHS88_03260 PF13292 1-deoxy-D-xylulose-5-phosphate synthase JHS88_03260 PF02779 Transketolase, pyrimidine binding domain JHS88_03260 PF02780 Transketolase, C-terminal domain JHS88_03265 PF00348 Polyprenyl synthetase JHS88_03270 PF02609 Exonuclease VII small subunit JHS88_03275 PF01618 MotA/TolQ/ExbB proton channel family JHS88_03280 PF00691 OmpA family JHS88_03285 PF02926 THUMP domain JHS88_03285 PF02568 Thiamine biosynthesis protein (ThiI) JHS88_03290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_03290 PF03466 LysR substrate binding domain JHS88_03300 PF04241 Protein of unknown function (DUF423) JHS88_03305 PF01728 FtsJ-like methyltransferase JHS88_03305 PF18125 RlmM ferredoxin-like domain JHS88_03310 PF01223 DNA/RNA non-specific endonuclease JHS88_03315 PF01367 5'-3' exonuclease, C-terminal SAM fold JHS88_03315 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JHS88_03320 PF11892 Domain of unknown function (DUF3412) JHS88_03320 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases JHS88_03320 PF03641 Possible lysine decarboxylase JHS88_03325 PF00990 Diguanylate cyclase, GGDEF domain JHS88_03335 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term JHS88_03335 PF14489 QueF-like protein JHS88_03340 PF07348 Syd protein (SUKH-2) JHS88_03345 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) JHS88_03350 PF03180 NLPA lipoprotein JHS88_03355 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_03360 PF00005 ABC transporter JHS88_03360 PF09383 NIL domain JHS88_03370 PF00356 Bacterial regulatory proteins, lacI family JHS88_03375 PF00367 phosphotransferase system, EIIB JHS88_03375 PF02378 Phosphotransferase system, EIIC JHS88_03380 PF00128 Alpha amylase, catalytic domain JHS88_03380 PF16657 Maltogenic Amylase, C-terminal domain JHS88_03395 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JHS88_03395 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JHS88_03400 PF00464 Serine hydroxymethyltransferase JHS88_03405 PF04055 Radical SAM superfamily JHS88_03405 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family JHS88_03410 PF03099 Biotin/lipoate A/B protein ligase family JHS88_03415 PF04359 Protein of unknown function (DUF493) JHS88_03420 PF00768 D-alanyl-D-alanine carboxypeptidase JHS88_03420 PF07943 Penicillin-binding protein 5, C-terminal domain JHS88_03425 PF03330 Lytic transglycolase JHS88_03425 PF05036 Sporulation related domain JHS88_03430 PF01098 Cell cycle protein JHS88_03435 PF03717 Penicillin-binding Protein dimerisation domain JHS88_03435 PF00905 Penicillin binding protein transpeptidase domain JHS88_03440 PF02590 Predicted SPOUT methyltransferase JHS88_03450 PF14840 Processivity clamp loader gamma complex DNA pol III C-term JHS88_03450 PF06144 DNA polymerase III, delta subunit JHS88_03455 PF04390 Lipopolysaccharide-assembly JHS88_03460 PF08264 Anticodon-binding domain of tRNA JHS88_03460 PF00133 tRNA synthetases class I (I, L, M and V) JHS88_03460 PF13603 Leucyl-tRNA synthetase, Domain 2 JHS88_03465 PF07295 Zinc-ribbon containing domain JHS88_03470 PF00795 Carbon-nitrogen hydrolase JHS88_03475 PF00571 CBS domain JHS88_03475 PF03471 Transporter associated domain JHS88_03480 PF02130 Uncharacterized protein family UPF0054 JHS88_03485 PF02562 PhoH-like protein JHS88_03490 PF01938 TRAM domain JHS88_03490 PF00919 Uncharacterized protein family UPF0004 JHS88_03490 PF04055 Radical SAM superfamily JHS88_03495 PF01494 FAD binding domain JHS88_03610 PF01926 50S ribosome-binding GTPase JHS88_03610 PF06071 Protein of unknown function (DUF933) JHS88_03615 PF01195 Peptidyl-tRNA hydrolase JHS88_03620 PF14572 Phosphoribosyl synthetase-associated domain JHS88_03620 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JHS88_03625 PF08544 GHMP kinases C terminal JHS88_03625 PF00288 GHMP kinases N terminal domain JHS88_03630 PF03550 Outer membrane lipoprotein LolB JHS88_03635 PF01488 Shikimate / quinate 5-dehydrogenase JHS88_03635 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain JHS88_03635 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain JHS88_03640 PF00472 RF-1 domain JHS88_03640 PF03462 PCRF domain JHS88_03645 PF13847 Methyltransferase domain JHS88_03645 PF17827 PrmC N-terminal domain JHS88_03650 PF04247 Invasion gene expression up-regulator, SirB JHS88_03655 PF13369 Transglutaminase-like superfamily JHS88_03660 PF00793 DAHP synthetase I family JHS88_03665 PF02872 5'-nucleotidase, C-terminal domain JHS88_03665 PF00149 Calcineurin-like phosphoesterase JHS88_03670 PF04073 Aminoacyl-tRNA editing domain JHS88_03675 PF01479 S4 domain JHS88_03675 PF00849 RNA pseudouridylate synthase JHS88_03680 PF01713 Smr domain JHS88_03700 PF03173 Putative carbohydrate binding domain JHS88_03700 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain JHS88_03700 PF00728 Glycosyl hydrolase family 20, catalytic domain JHS88_03700 PF02838 Glycosyl hydrolase family 20, domain 2 JHS88_03715 PF00403 Heavy-metal-associated domain JHS88_03720 PF13609 Gram-negative porin JHS88_03725 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) JHS88_03730 PF00749 tRNA synthetases class I (E and Q), catalytic domain JHS88_03735 PF01389 OmpA-like transmembrane domain JHS88_03735 PF00691 OmpA family JHS88_03780 PF00072 Response regulator receiver domain JHS88_03780 PF01584 CheW-like domain JHS88_03785 PF03705 CheR methyltransferase, all-alpha domain JHS88_03785 PF01739 CheR methyltransferase, SAM binding domain JHS88_03790 PF00460 Flagella basal body rod protein JHS88_03795 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JHS88_03795 PF00460 Flagella basal body rod protein JHS88_03800 PF13861 FlgD Tudor-like domain JHS88_03800 PF13860 FlgD Ig-like domain JHS88_03800 PF03963 Flagellar hook capping protein - N-terminal region JHS88_03805 PF00460 Flagella basal body rod protein JHS88_03805 PF07559 Flagellar basal body protein FlaE JHS88_03805 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JHS88_03810 PF00460 Flagella basal body rod protein JHS88_03810 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JHS88_03815 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JHS88_03815 PF00460 Flagella basal body rod protein JHS88_03820 PF02107 Flagellar L-ring protein JHS88_03825 PF02119 Flagellar P-ring protein JHS88_03830 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JHS88_03830 PF10135 Rod binding protein JHS88_03835 PF07196 Flagellin hook IN motif JHS88_03835 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JHS88_03840 PF00669 Bacterial flagellin N-terminal helical region JHS88_03845 PF07196 Flagellin hook IN motif JHS88_03845 PF00700 Bacterial flagellin C-terminal helical region JHS88_03845 PF00669 Bacterial flagellin N-terminal helical region JHS88_03850 PF00700 Bacterial flagellin C-terminal helical region JHS88_03850 PF07196 Flagellin hook IN motif JHS88_03850 PF00669 Bacterial flagellin N-terminal helical region JHS88_03855 PF07196 Flagellin hook IN motif JHS88_03855 PF00700 Bacterial flagellin C-terminal helical region JHS88_03855 PF00669 Bacterial flagellin N-terminal helical region JHS88_03860 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JHS88_03865 PF02896 PEP-utilising enzyme, TIM barrel domain JHS88_03865 PF00391 PEP-utilising enzyme, mobile domain JHS88_03865 PF05524 PEP-utilising enzyme, N-terminal JHS88_03870 PF00381 PTS HPr component phosphorylation site JHS88_03875 PF00291 Pyridoxal-phosphate dependent enzyme JHS88_03885 PF04354 ZipA, C-terminal FtsZ-binding domain JHS88_03890 PF00533 BRCA1 C Terminus (BRCT) domain JHS88_03890 PF03120 NAD-dependent DNA ligase OB-fold domain JHS88_03890 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JHS88_03890 PF12826 Helix-hairpin-helix motif JHS88_03890 PF01653 NAD-dependent DNA ligase adenylation domain JHS88_03895 PF03573 outer membrane porin, OprD family JHS88_03910 PF16200 C-terminal region of band_7 JHS88_03910 PF01145 SPFH domain / Band 7 family JHS88_03915 PF00085 Thioredoxin JHS88_03920 PF00106 short chain dehydrogenase JHS88_03925 PF01370 NAD dependent epimerase/dehydratase family JHS88_03925 PF08338 Domain of unknown function (DUF1731) JHS88_03930 PF07556 Protein of unknown function (DUF1538) JHS88_03935 PF07556 Protein of unknown function (DUF1538) JHS88_03950 PF12850 Calcineurin-like phosphoesterase superfamily domain JHS88_03965 PF17323 Trans-membrane regulatory protein ToxS JHS88_03970 PF00486 Transcriptional regulatory protein, C terminal JHS88_03975 PF00183 Hsp90 protein JHS88_03975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_03980 PF05191 Adenylate kinase, active site lid JHS88_03985 PF00762 Ferrochelatase JHS88_03990 PF00854 POT family JHS88_03995 PF02357 Transcription termination factor nusG JHS88_04000 PF13537 Glutamine amidotransferase domain JHS88_04000 PF00733 Asparagine synthase JHS88_04005 PF02254 TrkA-N domain JHS88_04005 PF00999 Sodium/hydrogen exchanger family JHS88_04010 PF01047 MarR family JHS88_04010 PF00480 ROK family JHS88_04015 PF01979 Amidohydrolase family JHS88_04020 PF00367 phosphotransferase system, EIIB JHS88_04020 PF02378 Phosphotransferase system, EIIC JHS88_04025 PF00749 tRNA synthetases class I (E and Q), catalytic domain JHS88_04025 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain JHS88_04030 PF01475 Ferric uptake regulator family JHS88_04040 PF00258 Flavodoxin JHS88_04050 PF12697 Alpha/beta hydrolase family JHS88_04055 PF03925 SeqA protein C-terminal domain JHS88_04055 PF17206 SeqA protein N-terminal domain JHS88_04060 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JHS88_04060 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JHS88_04060 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JHS88_04060 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JHS88_04070 PF01784 NIF3 (NGG1p interacting factor 3) JHS88_04075 PF00285 Citrate synthase, C-terminal domain JHS88_04080 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JHS88_04085 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JHS88_04090 PF00890 FAD binding domain JHS88_04090 PF02910 Fumarate reductase flavoprotein C-term JHS88_04095 PF13085 2Fe-2S iron-sulfur cluster binding domain JHS88_04100 PF00676 Dehydrogenase E1 component JHS88_04100 PF16078 2-oxoglutarate dehydrogenase N-terminus JHS88_04100 PF16870 2-oxoglutarate dehydrogenase C-terminal JHS88_04100 PF02779 Transketolase, pyrimidine binding domain JHS88_04105 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JHS88_04105 PF00364 Biotin-requiring enzyme JHS88_04105 PF02817 e3 binding domain JHS88_04110 PF08442 ATP-grasp domain JHS88_04110 PF00549 CoA-ligase JHS88_04115 PF02629 CoA binding domain JHS88_04115 PF00549 CoA-ligase JHS88_04120 PF00950 ABC 3 transport family JHS88_04125 PF00005 ABC transporter JHS88_04130 PF01297 Zinc-uptake complex component A periplasmic JHS88_04135 PF02311 AraC-like ligand binding domain JHS88_04135 PF12833 Helix-turn-helix domain JHS88_04140 PF04023 FeoA domain JHS88_04145 PF07664 Ferrous iron transport protein B C terminus JHS88_04145 PF17910 FeoB cytosolic helical domain JHS88_04145 PF02421 Ferrous iron transport protein B JHS88_04145 PF07670 Nucleoside recognition JHS88_04160 PF03485 Arginyl tRNA synthetase N terminal domain JHS88_04160 PF05746 DALR anticodon binding domain JHS88_04160 PF00750 tRNA synthetases class I (R) JHS88_04165 PF06185 YecM protein JHS88_04170 PF00551 Formyl transferase JHS88_04170 PF01842 ACT domain JHS88_04175 PF13307 Helicase C-terminal domain JHS88_04175 PF04851 Type III restriction enzyme, res subunit JHS88_04180 PF00814 Glycoprotease family JHS88_04195 PF00561 alpha/beta hydrolase fold JHS88_04200 PF00501 AMP-binding enzyme JHS88_04200 PF13193 AMP-binding enzyme C-terminal domain JHS88_04205 PF00570 HRDC domain JHS88_04205 PF01612 3'-5' exonuclease JHS88_04210 PF03776 Septum formation topological specificity factor MinE JHS88_04215 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JHS88_04220 PF03775 Septum formation inhibitor MinC, C-terminal domain JHS88_04220 PF05209 Septum formation inhibitor MinC, N-terminal domain JHS88_04225 PF05166 YcgL domain JHS88_04230 PF13406 Transglycosylase SLT domain JHS88_04235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_04235 PF03466 LysR substrate binding domain JHS88_04240 PF07670 Nucleoside recognition JHS88_04240 PF07662 Na+ dependent nucleoside transporter C-terminus JHS88_04240 PF01773 Na+ dependent nucleoside transporter N-terminus JHS88_04245 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JHS88_04245 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JHS88_04260 PF00109 Beta-ketoacyl synthase, N-terminal domain JHS88_04260 PF02801 Beta-ketoacyl synthase, C-terminal domain JHS88_04270 PF07977 FabA-like domain JHS88_04275 PF00109 Beta-ketoacyl synthase, N-terminal domain JHS88_04275 PF02801 Beta-ketoacyl synthase, C-terminal domain JHS88_04300 PF00221 Aromatic amino acid lyase JHS88_04305 PF00535 Glycosyl transferase family 2 JHS88_04310 PF07977 FabA-like domain JHS88_04325 PF00550 Phosphopantetheine attachment site JHS88_04330 PF00550 Phosphopantetheine attachment site JHS88_04355 PF04820 Tryptophan halogenase JHS88_04365 PF00571 CBS domain JHS88_04365 PF03471 Transporter associated domain JHS88_04365 PF01595 Cyclin M transmembrane N-terminal domain JHS88_04370 PF00270 DEAD/DEAH box helicase JHS88_04370 PF00271 Helicase conserved C-terminal domain JHS88_04375 PF02254 TrkA-N domain JHS88_04375 PF02080 TrkA-C domain JHS88_04380 PF02386 Cation transport protein JHS88_04395 PF02696 Uncharacterized ACR, YdiU/UPF0061 family JHS88_04400 PF03480 Bacterial extracellular solute-binding protein, family 7 JHS88_04405 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component JHS88_04410 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JHS88_04420 PF00158 Sigma-54 interaction domain JHS88_04420 PF00072 Response regulator receiver domain JHS88_04420 PF02954 Bacterial regulatory protein, Fis family JHS88_04425 PF00512 His Kinase A (phospho-acceptor) domain JHS88_04425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_04425 PF02743 Cache domain JHS88_04435 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JHS88_04435 PF05698 Bacterial trigger factor protein (TF) C-terminus JHS88_04435 PF05697 Bacterial trigger factor protein (TF) JHS88_04440 PF00574 Clp protease JHS88_04445 PF10431 C-terminal, D2-small domain, of ClpB protein JHS88_04445 PF07724 AAA domain (Cdc48 subfamily) JHS88_04445 PF06689 ClpX C4-type zinc finger JHS88_04450 PF00004 ATPase family associated with various cellular activities (AAA) JHS88_04450 PF05362 Lon protease (S16) C-terminal proteolytic domain JHS88_04450 PF02190 ATP-dependent protease La (LON) substrate-binding domain JHS88_04455 PF00216 Bacterial DNA-binding protein JHS88_04460 PF13145 PPIC-type PPIASE domain JHS88_04480 PF01966 HD domain JHS88_04480 PF13286 Phosphohydrolase-associated domain JHS88_04490 PF00155 Aminotransferase class I and II JHS88_04495 PF00425 chorismate binding enzyme JHS88_04500 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JHS88_04500 PF16582 Middle domain of thiamine pyrophosphate JHS88_04500 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JHS88_04505 PF12697 Alpha/beta hydrolase family JHS88_04510 PF00378 Enoyl-CoA hydratase/isomerase JHS88_04515 PF13378 Enolase C-terminal domain-like JHS88_04520 PF00501 AMP-binding enzyme JHS88_04520 PF13193 AMP-binding enzyme C-terminal domain JHS88_04530 PF03601 Conserved hypothetical protein 698 JHS88_04535 PF07690 Major Facilitator Superfamily JHS88_04580 PF13533 Biotin-lipoyl like JHS88_04585 PF00873 AcrB/AcrD/AcrF family JHS88_04605 PF00291 Pyridoxal-phosphate dependent enzyme JHS88_04610 PF01037 Lrp/AsnC ligand binding domain JHS88_04610 PF13404 AsnC-type helix-turn-helix domain JHS88_04625 PF09619 Type III secretion system lipoprotein chaperone (YscW) JHS88_04630 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JHS88_04640 PF00990 Diguanylate cyclase, GGDEF domain JHS88_04640 PF17152 Periplasmic sensor domain JHS88_04650 PF00588 SpoU rRNA Methylase family JHS88_04650 PF08032 RNA 2'-O ribose methyltransferase substrate binding JHS88_04655 PF11953 Domain of unknown function (DUF3470) JHS88_04655 PF00037 4Fe-4S binding domain JHS88_04665 PF00571 CBS domain JHS88_04665 PF00478 IMP dehydrogenase / GMP reductase domain JHS88_04670 PF00403 Heavy-metal-associated domain JHS88_04675 PF01048 Phosphorylase superfamily JHS88_04685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS88_04685 PF00672 HAMP domain JHS88_04690 PF01230 HIT domain JHS88_04705 PF08139 Prokaryotic membrane lipoprotein lipid attachment site JHS88_04705 PF13036 Peptidoglycan-synthase activator LpoB JHS88_04715 PF05728 Uncharacterised protein family (UPF0227) JHS88_04720 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS88_04735 PF02559 CarD-like/TRCF domain JHS88_04735 PF00270 DEAD/DEAH box helicase JHS88_04735 PF00271 Helicase conserved C-terminal domain JHS88_04735 PF03461 TRCF domain JHS88_04735 PF17757 UvrB interaction domain JHS88_04745 PF02687 FtsX-like permease family JHS88_04745 PF12704 MacB-like periplasmic core domain JHS88_04750 PF00005 ABC transporter JHS88_04755 PF02687 FtsX-like permease family JHS88_04755 PF12704 MacB-like periplasmic core domain JHS88_04765 PF00753 Metallo-beta-lactamase superfamily JHS88_04765 PF13567 Domain of unknown function (DUF4131) JHS88_04765 PF03772 Competence protein JHS88_04770 PF00005 ABC transporter JHS88_04770 PF00664 ABC transporter transmembrane region JHS88_04775 PF02606 Tetraacyldisaccharide-1-P 4'-kinase JHS88_04780 PF03966 Trm112p-like protein JHS88_04785 PF02348 Cytidylyltransferase JHS88_04790 PF04293 SpoVR like protein JHS88_04795 PF04285 Protein of unknown function (DUF444) JHS88_04800 PF08298 PrkA AAA domain JHS88_04800 PF06798 PrkA serine protein kinase C-terminal domain JHS88_04805 PF03887 YfbU domain JHS88_04815 PF04055 Radical SAM superfamily JHS88_04825 PF02901 Pyruvate formate lyase-like JHS88_04825 PF01228 Glycine radical JHS88_04840 PF00005 ABC transporter JHS88_04845 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS88_04850 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_04855 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_04865 PF03372 Endonuclease/Exonuclease/phosphatase family JHS88_04870 PF10689 Protein of unknown function (DUF2496) JHS88_04875 PF07445 Primosomal replication protein priC JHS88_04880 PF01925 Sulfite exporter TauE/SafE JHS88_04885 PF13307 Helicase C-terminal domain JHS88_04885 PF06733 DEAD_2 JHS88_04895 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) JHS88_04900 PF00849 RNA pseudouridylate synthase JHS88_04905 PF03971 Monomeric isocitrate dehydrogenase JHS88_04910 PF00313 'Cold-shock' DNA-binding domain JHS88_04915 PF02617 ATP-dependent Clp protease adaptor protein ClpS JHS88_04920 PF00004 ATPase family associated with various cellular activities (AAA) JHS88_04920 PF07724 AAA domain (Cdc48 subfamily) JHS88_04920 PF17871 AAA lid domain JHS88_04920 PF02861 Clp amino terminal domain, pathogenicity island component JHS88_04920 PF10431 C-terminal, D2-small domain, of ClpB protein JHS88_04930 PF01176 Translation initiation factor 1A / IF-1 JHS88_04935 PF04376 Arginine-tRNA-protein transferase, N terminus JHS88_04935 PF04377 Arginine-tRNA-protein transferase, C terminus JHS88_04940 PF03588 Leucyl/phenylalanyl-tRNA protein transferase JHS88_04950 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JHS88_04955 PF10692 Protein of unknown function (DUF2498) JHS88_04960 PF01396 Topoisomerase DNA binding C4 zinc finger JHS88_04960 PF01131 DNA topoisomerase JHS88_04960 PF08272 Topoisomerase I zinc-ribbon-like JHS88_04960 PF01751 Toprim domain JHS88_04965 PF00483 Nucleotidyl transferase JHS88_04970 PF08323 Starch synthase catalytic domain JHS88_04970 PF00534 Glycosyl transferases group 1 JHS88_04990 PF04993 TfoX N-terminal domain JHS88_04990 PF04994 TfoX C-terminal domain JHS88_04995 PF00356 Bacterial regulatory proteins, lacI family JHS88_05000 PF02613 Nitrate reductase delta subunit JHS88_05005 PF00072 Response regulator receiver domain JHS88_05005 PF00486 Transcriptional regulatory protein, C terminal JHS88_05010 PF02698 DUF218 domain JHS88_05015 PF13847 Methyltransferase domain JHS88_05020 PF17192 MukF middle domain JHS88_05020 PF17193 MukF C-terminal domain JHS88_05020 PF03882 MukF winged-helix domain JHS88_05025 PF04288 MukE-like family JHS88_05030 PF04310 MukB N-terminal JHS88_05030 PF16330 MukB hinge domain JHS88_05040 PF08443 RimK-like ATP-grasp domain JHS88_05040 PF18030 RimK PreATP-grasp domain JHS88_05050 PF08443 RimK-like ATP-grasp domain JHS88_05050 PF18030 RimK PreATP-grasp domain JHS88_05055 PF08003 Protein of unknown function (DUF1698) JHS88_05060 PF13649 Methyltransferase domain JHS88_05065 PF01904 Protein of unknown function DUF72 JHS88_05070 PF02938 GAD domain JHS88_05070 PF00152 tRNA synthetases class II (D, K and N) JHS88_05070 PF01336 OB-fold nucleic acid binding domain JHS88_05075 PF02075 Crossover junction endodeoxyribonuclease RuvC JHS88_05080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS88_05080 PF02203 Tar ligand binding domain homologue JHS88_05080 PF00672 HAMP domain JHS88_05085 PF01330 RuvA N terminal domain JHS88_05085 PF07499 RuvA, C-terminal domain JHS88_05090 PF05496 Holliday junction DNA helicase RuvB P-loop domain JHS88_05090 PF17864 RuvB AAA lid domain JHS88_05090 PF05491 RuvB C-terminal winged helix domain JHS88_05095 PF01654 Cytochrome bd terminal oxidase subunit I JHS88_05100 PF02322 Cytochrome bd terminal oxidase subunit II JHS88_05105 PF08173 Membrane bound YbgT-like protein JHS88_05115 PF03061 Thioesterase superfamily JHS88_05120 PF01618 MotA/TolQ/ExbB proton channel family JHS88_05125 PF02472 Biopolymer transport protein ExbD/TolR JHS88_05135 PF07676 WD40-like Beta Propeller Repeat JHS88_05135 PF04052 TolB amino-terminal domain JHS88_05140 PF00691 OmpA family JHS88_05145 PF16331 TolA binding protein trimerisation JHS88_05145 PF13174 Tetratricopeptide repeat JHS88_05150 PF02445 Quinolinate synthetase A protein JHS88_05160 PF03994 Domain of Unknown Function (DUF350) JHS88_05170 PF03738 Glutathionylspermidine synthase preATP-grasp JHS88_05180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_05180 PF00512 His Kinase A (phospho-acceptor) domain JHS88_05180 PF09308 LuxQ, periplasmic JHS88_05180 PF00072 Response regulator receiver domain JHS88_05185 PF06610 L-alanine exporter JHS88_05210 PF12344 Ultra-violet resistance protein B JHS88_05210 PF02151 UvrB/uvrC motif JHS88_05210 PF04851 Type III restriction enzyme, res subunit JHS88_05210 PF00271 Helicase conserved C-terminal domain JHS88_05210 PF17757 UvrB interaction domain JHS88_05270 PF02796 Helix-turn-helix domain of resolvase JHS88_05270 PF00239 Resolvase, N terminal domain JHS88_05280 PF00672 HAMP domain JHS88_05280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS88_05280 PF12729 Four helix bundle sensory module for signal transduction JHS88_05285 PF00529 HlyD membrane-fusion protein of T1SS JHS88_05285 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS88_05290 PF00873 AcrB/AcrD/AcrF family JHS88_05305 PF00579 tRNA synthetases class I (W and Y) JHS88_05315 PF03372 Endonuclease/Exonuclease/phosphatase family JHS88_05320 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) JHS88_05330 PF03466 LysR substrate binding domain JHS88_05330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_05340 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JHS88_05340 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JHS88_05345 PF01037 Lrp/AsnC ligand binding domain JHS88_05350 PF01580 FtsK/SpoIIIE family JHS88_05350 PF09397 Ftsk gamma domain JHS88_05350 PF17854 FtsK alpha domain JHS88_05350 PF13491 4TM region of DNA translocase FtsK/SpoIIIE JHS88_05355 PF03548 Outer membrane lipoprotein carrier protein LolA JHS88_05360 PF12002 MgsA AAA+ ATPase C terminal JHS88_05360 PF16193 AAA C-terminal domain JHS88_05360 PF00004 ATPase family associated with various cellular activities (AAA) JHS88_05365 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JHS88_05365 PF02403 Seryl-tRNA synthetase N-terminal domain JHS88_05375 PF01258 Prokaryotic dksA/traR C4-type zinc finger JHS88_05380 PF00202 Aminotransferase class-III JHS88_05385 PF04055 Radical SAM superfamily JHS88_05385 PF06968 Biotin and Thiamin Synthesis associated domain JHS88_05390 PF00155 Aminotransferase class I and II JHS88_05395 PF08241 Methyltransferase domain JHS88_05410 PF01435 Peptidase family M48 JHS88_05420 PF00106 short chain dehydrogenase JHS88_05455 PF00206 Lyase JHS88_05455 PF08328 Adenylosuccinate lyase C-terminal JHS88_05460 PF04356 Protein of unknown function (DUF489) JHS88_05475 PF00294 pfkB family carbohydrate kinase JHS88_05480 PF00816 H-NS histone family JHS88_05485 PF03553 Na+/H+ antiporter family JHS88_05495 PF02954 Bacterial regulatory protein, Fis family JHS88_05495 PF00158 Sigma-54 interaction domain JHS88_05495 PF00072 Response regulator receiver domain JHS88_05500 PF08029 HisG, C-terminal domain JHS88_05500 PF01634 ATP phosphoribosyltransferase JHS88_05505 PF00815 Histidinol dehydrogenase JHS88_05510 PF00155 Aminotransferase class I and II JHS88_05515 PF08645 Polynucleotide kinase 3 phosphatase JHS88_05515 PF00475 Imidazoleglycerol-phosphate dehydratase JHS88_05520 PF00117 Glutamine amidotransferase class-I JHS88_05525 PF00977 Histidine biosynthesis protein JHS88_05530 PF00977 Histidine biosynthesis protein JHS88_05535 PF01502 Phosphoribosyl-AMP cyclohydrolase JHS88_05535 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase JHS88_05540 PF02810 SEC-C motif JHS88_05545 PF08668 HDOD domain JHS88_05545 PF00563 EAL domain JHS88_05550 PF00149 Calcineurin-like phosphoesterase JHS88_05555 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JHS88_05560 PF01406 tRNA synthetases class I (C) catalytic domain JHS88_05560 PF09190 DALR domain JHS88_05565 PF00265 Thymidine kinase JHS88_05570 PF02698 DUF218 domain JHS88_05595 PF01226 Formate/nitrite transporter JHS88_05605 PF03649 Uncharacterised protein family (UPF0014) JHS88_05610 PF06796 Periplasmic nitrate reductase protein NapE JHS88_05615 PF03264 NapC/NirT cytochrome c family, N-terminal region JHS88_05620 PF18364 Molybdopterin oxidoreductase N-terminal domain JHS88_05620 PF00384 Molybdopterin oxidoreductase JHS88_05620 PF01568 Molydopterin dinucleotide binding domain JHS88_05625 PF16874 Glycosyl hydrolase family 36 C-terminal domain JHS88_05625 PF16875 Glycosyl hydrolase family 36 N-terminal domain JHS88_05635 PF01368 DHH family JHS88_05635 PF02833 DHHA2 domain JHS88_05645 PF00005 ABC transporter JHS88_05650 PF00005 ABC transporter JHS88_05650 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS88_05655 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_05655 PF12911 N-terminal TM domain of oligopeptide transport permease C JHS88_05660 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_05665 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JHS88_05670 PF02954 Bacterial regulatory protein, Fis family JHS88_05670 PF00158 Sigma-54 interaction domain JHS88_05675 PF04012 PspA/IM30 family JHS88_05680 PF06667 Phage shock protein B JHS88_05685 PF04024 PspC domain JHS88_05690 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS88_05695 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS88_05700 PF00873 AcrB/AcrD/AcrF family JHS88_05705 PF03352 Methyladenine glycosylase JHS88_05710 PF03280 Proteobacterial lipase chaperone protein JHS88_05715 PF00561 alpha/beta hydrolase fold JHS88_05720 PF01053 Cys/Met metabolism PLP-dependent enzyme JHS88_05725 PF13091 PLD-like domain JHS88_05725 PF13396 Phospholipase_D-nuclease N-terminal JHS88_05730 PF00209 Sodium:neurotransmitter symporter family JHS88_05735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS88_05735 PF12729 Four helix bundle sensory module for signal transduction JHS88_05735 PF00672 HAMP domain JHS88_05740 PF00849 RNA pseudouridylate synthase JHS88_05750 PF00175 Oxidoreductase NAD-binding domain JHS88_05750 PF00111 2Fe-2S iron-sulfur cluster binding domain JHS88_05750 PF00970 Oxidoreductase FAD-binding domain JHS88_05755 PF03063 Prismane/CO dehydrogenase family JHS88_05760 PF00158 Sigma-54 interaction domain JHS88_05760 PF01590 GAF domain JHS88_05770 PF01066 CDP-alcohol phosphatidyltransferase JHS88_05775 PF00005 ABC transporter JHS88_05780 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_05785 PF13416 Bacterial extracellular solute-binding protein JHS88_05790 PF09335 SNARE associated Golgi protein JHS88_05800 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JHS88_05800 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS88_05810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_05810 PF00512 His Kinase A (phospho-acceptor) domain JHS88_05815 PF00196 Bacterial regulatory proteins, luxR family JHS88_05815 PF00072 Response regulator receiver domain JHS88_05825 PF06945 Protein of unknown function (DUF1289) JHS88_05835 PF00149 Calcineurin-like phosphoesterase JHS88_05835 PF02872 5'-nucleotidase, C-terminal domain JHS88_05850 PF01386 Ribosomal L25p family JHS88_05855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_05860 PF00072 Response regulator receiver domain JHS88_05860 PF00486 Transcriptional regulatory protein, C terminal JHS88_05870 PF00271 Helicase conserved C-terminal domain JHS88_05870 PF04851 Type III restriction enzyme, res subunit JHS88_05875 PF00849 RNA pseudouridylate synthase JHS88_05875 PF01479 S4 domain JHS88_05880 PF07690 Major Facilitator Superfamily JHS88_05895 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) JHS88_05905 PF13737 Transposase DDE domain JHS88_05915 PF03264 NapC/NirT cytochrome c family, N-terminal region JHS88_05925 PF01554 MatE JHS88_05930 PF00005 ABC transporter JHS88_05945 PF06965 Na+/H+ antiporter 1 JHS88_05950 PF00440 Bacterial regulatory proteins, tetR family JHS88_05950 PF16295 Tetracyclin repressor-like, C-terminal domain JHS88_05955 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JHS88_05955 PF02770 Acyl-CoA dehydrogenase, middle domain JHS88_05955 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JHS88_05955 PF09317 Domain of unknown function (DUF1974) JHS88_05960 PF07055 Enoyl reductase FAD binding domain JHS88_05960 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase JHS88_05960 PF12241 Trans-2-enoyl-CoA reductase catalytic region JHS88_05965 PF06826 Predicted Permease Membrane Region JHS88_05965 PF02080 TrkA-C domain JHS88_05970 PF00462 Glutaredoxin JHS88_05975 PF00465 Iron-containing alcohol dehydrogenase JHS88_05980 PF01418 Helix-turn-helix domain, rpiR family JHS88_05980 PF01380 SIS domain JHS88_05985 PF00282 Pyridoxal-dependent decarboxylase conserved domain JHS88_05995 PF03956 Lysine exporter LysO JHS88_06005 PF04993 TfoX N-terminal domain JHS88_06005 PF04994 TfoX C-terminal domain JHS88_06020 PF00512 His Kinase A (phospho-acceptor) domain JHS88_06020 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS88_06020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_06030 PF00266 Aminotransferase class-V JHS88_06035 PF00291 Pyridoxal-phosphate dependent enzyme JHS88_06040 PF00664 ABC transporter transmembrane region JHS88_06040 PF00005 ABC transporter JHS88_06045 PF00664 ABC transporter transmembrane region JHS88_06045 PF00005 ABC transporter JHS88_06050 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS88_06060 PF00266 Aminotransferase class-V JHS88_06070 PF00990 Diguanylate cyclase, GGDEF domain JHS88_06070 PF00072 Response regulator receiver domain JHS88_06075 PF00939 Sodium:sulfate symporter transmembrane region JHS88_06080 PF02698 DUF218 domain JHS88_06085 PF03949 Malic enzyme, NAD binding domain JHS88_06085 PF00390 Malic enzyme, N-terminal domain JHS88_06090 PF00270 DEAD/DEAH box helicase JHS88_06090 PF04408 Helicase associated domain (HA2) JHS88_06090 PF00271 Helicase conserved C-terminal domain JHS88_06090 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold JHS88_06095 PF02253 Phospholipase A1 JHS88_06105 PF09423 PhoD-like phosphatase JHS88_06105 PF16655 PhoD-like phosphatase, N-terminal domain JHS88_06110 PF01259 SAICAR synthetase JHS88_06130 PF05736 OprF membrane domain JHS88_06130 PF00691 OmpA family JHS88_06145 PF02913 FAD linked oxidases, C-terminal domain JHS88_06145 PF13183 4Fe-4S dicluster domain JHS88_06145 PF01565 FAD binding domain JHS88_06150 PF04191 Phospholipid methyltransferase JHS88_06160 PF00221 Aromatic amino acid lyase JHS88_06165 PF01175 Urocanase Rossmann-like domain JHS88_06165 PF17392 Urocanase C-terminal domain JHS88_06165 PF17391 Urocanase N-terminal domain JHS88_06170 PF00491 Arginase family JHS88_06175 PF01979 Amidohydrolase family JHS88_06180 PF00392 Bacterial regulatory proteins, gntR family JHS88_06180 PF07702 UTRA domain JHS88_06195 PF03129 Anticodon binding domain JHS88_06195 PF02824 TGS domain JHS88_06195 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JHS88_06195 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JHS88_06200 PF05198 Translation initiation factor IF-3, N-terminal domain JHS88_06200 PF00707 Translation initiation factor IF-3, C-terminal domain JHS88_06205 PF01632 Ribosomal protein L35 JHS88_06210 PF00453 Ribosomal protein L20 JHS88_06215 PF01906 Putative heavy-metal-binding JHS88_06245 PF00990 Diguanylate cyclase, GGDEF domain JHS88_06245 PF17158 Membrane-associated sensor, integral membrane domain JHS88_06250 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JHS88_06250 PF01409 tRNA synthetases class II core domain (F) JHS88_06255 PF03483 B3/4 domain JHS88_06255 PF03484 tRNA synthetase B5 domain JHS88_06255 PF03147 Ferredoxin-fold anticodon binding domain JHS88_06255 PF01588 Putative tRNA binding domain JHS88_06255 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JHS88_06265 PF00216 Bacterial DNA-binding protein JHS88_06275 PF05724 Thiopurine S-methyltransferase (TPMT) JHS88_06280 PF02222 ATP-grasp domain JHS88_06285 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JHS88_06285 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region JHS88_06290 PF04172 LrgB-like family JHS88_06295 PF03788 LrgA family JHS88_06300 PF08411 Exonuclease C-terminal JHS88_06300 PF00929 Exonuclease JHS88_06305 PF00375 Sodium:dicarboxylate symporter family JHS88_06310 PF13460 NAD(P)H-binding JHS88_06315 PF02277 Phosphoribosyltransferase JHS88_06320 PF02654 Cobalamin-5-phosphate synthase JHS88_06325 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase JHS88_06330 PF00300 Histidine phosphatase superfamily (branch 1) JHS88_06340 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family JHS88_06345 PF01032 FecCD transport family JHS88_06350 PF00005 ABC transporter JHS88_06370 PF03466 LysR substrate binding domain JHS88_06370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_06380 PF01863 Protein of unknown function DUF45 JHS88_06385 PF05971 RNA methyltransferase JHS88_06405 PF00392 Bacterial regulatory proteins, gntR family JHS88_06410 PF00171 Aldehyde dehydrogenase family JHS88_06415 PF05544 Proline racemase JHS88_06430 PF02423 Ornithine cyclodeaminase/mu-crystallin family JHS88_06435 PF00701 Dihydrodipicolinate synthetase family JHS88_06440 PF08402 TOBE domain JHS88_06440 PF00005 ABC transporter JHS88_06445 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_06450 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_06460 PF01752 Collagenase JHS88_06460 PF08453 Peptidase family M9 N-terminal JHS88_06470 PF00005 ABC transporter JHS88_06470 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS88_06475 PF00005 ABC transporter JHS88_06475 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS88_06480 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_06480 PF12911 N-terminal TM domain of oligopeptide transport permease C JHS88_06485 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_06490 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JHS88_06495 PF07687 Peptidase dimerisation domain JHS88_06495 PF01546 Peptidase family M20/M25/M40 JHS88_06500 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JHS88_06505 PF04209 homogentisate 1,2-dioxygenase JHS88_06515 PF14497 Glutathione S-transferase, C-terminal domain JHS88_06515 PF02798 Glutathione S-transferase, N-terminal domain JHS88_06555 PF02405 Permease MlaE JHS88_06560 PF00005 ABC transporter JHS88_06575 PF12794 Mechanosensitive ion channel inner membrane domain 1 JHS88_06575 PF00924 Mechanosensitive ion channel JHS88_06575 PF12795 Mechanosensitive ion channel porin domain JHS88_06590 PF13533 Biotin-lipoyl like JHS88_06605 PF13520 Amino acid permease JHS88_06615 PF13520 Amino acid permease JHS88_06625 PF13737 Transposase DDE domain JHS88_06635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_06635 PF03466 LysR substrate binding domain JHS88_06640 PF01546 Peptidase family M20/M25/M40 JHS88_06640 PF07687 Peptidase dimerisation domain JHS88_06660 PF00300 Histidine phosphatase superfamily (branch 1) JHS88_06675 PF00939 Sodium:sulfate symporter transmembrane region JHS88_06680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_06680 PF00512 His Kinase A (phospho-acceptor) domain JHS88_06680 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS88_06685 PF02954 Bacterial regulatory protein, Fis family JHS88_06685 PF00072 Response regulator receiver domain JHS88_06685 PF00158 Sigma-54 interaction domain JHS88_06690 PF00563 EAL domain JHS88_06690 PF00990 Diguanylate cyclase, GGDEF domain JHS88_06690 PF03707 Bacterial signalling protein N terminal repeat JHS88_06695 PF11871 Domain of unknown function (DUF3391) JHS88_06695 PF01966 HD domain JHS88_06700 PF01810 LysE type translocator JHS88_06705 PF11230 Protein of unknown function (DUF3029) JHS88_06710 PF04055 Radical SAM superfamily JHS88_06720 PF03741 Integral membrane protein TerC family JHS88_06725 PF01551 Peptidase family M23 JHS88_06725 PF08525 Opacity-associated protein A N-terminal motif JHS88_06725 PF01476 LysM domain JHS88_06750 PF02954 Bacterial regulatory protein, Fis family JHS88_06750 PF00158 Sigma-54 interaction domain JHS88_06755 PF00004 ATPase family associated with various cellular activities (AAA) JHS88_06755 PF07724 AAA domain (Cdc48 subfamily) JHS88_06755 PF17871 AAA lid domain JHS88_06755 PF10431 C-terminal, D2-small domain, of ClpB protein JHS88_06760 PF05638 Type VI secretion system effector, Hcp JHS88_06765 PF04717 Type VI secretion system, phage-baseplate injector JHS88_06790 PF00069 Protein kinase domain JHS88_06805 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath JHS88_06815 PF05947 Type VI secretion system, TssF JHS88_06825 PF01037 Lrp/AsnC ligand binding domain JHS88_06855 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE JHS88_06910 PF01966 HD domain JHS88_06915 PF00465 Iron-containing alcohol dehydrogenase JHS88_06920 PF03222 Tryptophan/tyrosine permease family JHS88_06940 PF00664 ABC transporter transmembrane region JHS88_06940 PF00005 ABC transporter JHS88_06945 PF00664 ABC transporter transmembrane region JHS88_06945 PF00005 ABC transporter JHS88_06970 PF00012 Hsp70 protein JHS88_06975 PF00012 Hsp70 protein JHS88_06985 PF00990 Diguanylate cyclase, GGDEF domain JHS88_06985 PF17158 Membrane-associated sensor, integral membrane domain JHS88_07015 PF01568 Molydopterin dinucleotide binding domain JHS88_07015 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JHS88_07015 PF00384 Molybdopterin oxidoreductase JHS88_07020 PF13247 4Fe-4S dicluster domain JHS88_07020 PF12800 4Fe-4S binding domain JHS88_07025 PF04976 DMSO reductase anchor subunit (DmsC) JHS88_07030 PF02613 Nitrate reductase delta subunit JHS88_07040 PF02525 Flavodoxin-like fold JHS88_07045 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold JHS88_07045 PF00270 DEAD/DEAH box helicase JHS88_07045 PF04408 Helicase associated domain (HA2) JHS88_07045 PF11898 Domain of unknown function (DUF3418) JHS88_07045 PF00271 Helicase conserved C-terminal domain JHS88_07060 PF02028 BCCT, betaine/carnitine/choline family transporter JHS88_07070 PF02397 Bacterial sugar transferase JHS88_07075 PF00535 Glycosyl transferase family 2 JHS88_07080 PF13439 Glycosyltransferase Family 4 JHS88_07080 PF00534 Glycosyl transferases group 1 JHS88_07110 PF13439 Glycosyltransferase Family 4 JHS88_07110 PF00534 Glycosyl transferases group 1 JHS88_07115 PF13439 Glycosyltransferase Family 4 JHS88_07115 PF00534 Glycosyl transferases group 1 JHS88_07120 PF02954 Bacterial regulatory protein, Fis family JHS88_07120 PF00072 Response regulator receiver domain JHS88_07120 PF00158 Sigma-54 interaction domain JHS88_07135 PF10531 SLBB domain JHS88_07135 PF02563 Polysaccharide biosynthesis/export protein JHS88_07145 PF01740 STAS domain JHS88_07150 PF01068 ATP dependent DNA ligase domain JHS88_07150 PF14743 DNA ligase OB-like domain JHS88_07160 PF01554 MatE JHS88_07165 PF00677 Lumazine binding domain JHS88_07175 PF03881 Fructosamine kinase JHS88_07180 PF01339 CheB methylesterase JHS88_07180 PF00072 Response regulator receiver domain JHS88_07185 PF00990 Diguanylate cyclase, GGDEF domain JHS88_07185 PF05230 MASE2 domain JHS88_07195 PF00877 NlpC/P60 family JHS88_07200 PF12729 Four helix bundle sensory module for signal transduction JHS88_07200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS88_07200 PF00672 HAMP domain JHS88_07235 PF03942 DTW domain JHS88_07240 PF00480 ROK family JHS88_07250 PF00994 Probable molybdopterin binding domain JHS88_07250 PF03454 MoeA C-terminal region (domain IV) JHS88_07250 PF03453 MoeA N-terminal region (domain I and II) JHS88_07255 PF12804 MobA-like NTP transferase domain JHS88_07260 PF00005 ABC transporter JHS88_07260 PF08402 TOBE domain JHS88_07265 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_07270 PF12849 PBP superfamily domain JHS88_07275 PF00158 Sigma-54 interaction domain JHS88_07275 PF00072 Response regulator receiver domain JHS88_07275 PF02954 Bacterial regulatory protein, Fis family JHS88_07280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_07280 PF00512 His Kinase A (phospho-acceptor) domain JHS88_07285 PF00005 ABC transporter JHS88_07285 PF12848 ABC transporter JHS88_07290 PF02634 FdhD/NarQ family JHS88_07310 PF02613 Nitrate reductase delta subunit JHS88_07320 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JHS88_07320 PF00384 Molybdopterin oxidoreductase JHS88_07320 PF01568 Molydopterin dinucleotide binding domain JHS88_07325 PF13247 4Fe-4S dicluster domain JHS88_07340 PF03527 RHS protein JHS88_07340 PF05593 RHS Repeat JHS88_07360 PF00909 Ammonium Transporter Family JHS88_07370 PF02146 Sir2 family JHS88_07375 PF13416 Bacterial extracellular solute-binding protein JHS88_07380 PF13416 Bacterial extracellular solute-binding protein JHS88_07385 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_07390 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_07395 PF00005 ABC transporter JHS88_07395 PF08402 TOBE domain JHS88_07415 PF01171 PP-loop family JHS88_07420 PF00582 Universal stress protein family JHS88_07425 PF00027 Cyclic nucleotide-binding domain JHS88_07425 PF13545 Crp-like helix-turn-helix domain JHS88_07440 PF00403 Heavy-metal-associated domain JHS88_07450 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JHS88_07450 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP JHS88_07465 PF00115 Cytochrome C and Quinol oxidase polypeptide I JHS88_07480 PF00072 Response regulator receiver domain JHS88_07480 PF09308 LuxQ, periplasmic JHS88_07480 PF00512 His Kinase A (phospho-acceptor) domain JHS88_07480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_07550 PF17414 MatP C-terminal ribbon-helix-helix domain JHS88_07550 PF06303 MatP N-terminal domain JHS88_07555 PF13654 AAA domain JHS88_07555 PF05362 Lon protease (S16) C-terminal proteolytic domain JHS88_07560 PF07977 FabA-like domain JHS88_07565 PF04957 Ribosome modulation factor JHS88_07575 PF12848 ABC transporter JHS88_07575 PF16326 ABC transporter C-terminal domain JHS88_07575 PF00005 ABC transporter JHS88_07585 PF01170 Putative RNA methylase family UPF0020 JHS88_07585 PF02926 THUMP domain JHS88_07585 PF10672 S-adenosylmethionine-dependent methyltransferase JHS88_07590 PF07126 Cell-division protein ZapC JHS88_07595 PF01180 Dihydroorotate dehydrogenase JHS88_07600 PF05088 Bacterial NAD-glutamate dehydrogenase JHS88_07610 PF01433 Peptidase family M1 domain JHS88_07610 PF17432 Domain of unknown function (DUF3458_C) ARM repeats JHS88_07610 PF11940 Domain of unknown function (DUF3458) Ig-like fold JHS88_07620 PF11818 C-terminal domain of tail specific protease (DUF3340) JHS88_07620 PF17804 Tail specific protease N-terminal domain JHS88_07620 PF00595 PDZ domain JHS88_07620 PF03572 Peptidase family S41 JHS88_07625 PF17516 ProQ C-terminal domain JHS88_07625 PF04352 ProQ/FINO family JHS88_07630 PF13185 GAF domain JHS88_07635 PF00664 ABC transporter transmembrane region JHS88_07635 PF00005 ABC transporter JHS88_07640 PF04403 Paraquat-inducible protein A JHS88_07645 PF02470 MlaD protein JHS88_07650 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF JHS88_07650 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF JHS88_07650 PF01189 16S rRNA methyltransferase RsmB/F JHS88_07670 PF00793 DAHP synthetase I family JHS88_07675 PF04461 Protein of unknown function (DUF520) JHS88_07680 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JHS88_07680 PF14824 Sirohaem biosynthesis protein central JHS88_07680 PF10414 Sirohaem synthase dimerisation region JHS88_07685 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS88_07690 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_07695 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_07700 PF00005 ABC transporter JHS88_07705 PF01027 Inhibitor of apoptosis-promoting Bax1 JHS88_07715 PF04358 DsrC like protein JHS88_07720 PF00708 Acylphosphatase JHS88_07725 PF02743 Cache domain JHS88_07725 PF00672 HAMP domain JHS88_07725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS88_07730 PF17785 PUA-like domain JHS88_07730 PF10672 S-adenosylmethionine-dependent methyltransferase JHS88_07745 PF00691 OmpA family JHS88_07745 PF05736 OprF membrane domain JHS88_07760 PF05736 OprF membrane domain JHS88_07760 PF00691 OmpA family JHS88_07770 PF17158 Membrane-associated sensor, integral membrane domain JHS88_07770 PF00990 Diguanylate cyclase, GGDEF domain JHS88_07775 PF06508 Queuosine biosynthesis protein QueC JHS88_07780 PF04055 Radical SAM superfamily JHS88_07795 PF00089 Trypsin JHS88_07800 PF00583 Acetyltransferase (GNAT) family JHS88_07805 PF13193 AMP-binding enzyme C-terminal domain JHS88_07805 PF16177 Acetyl-coenzyme A synthetase N-terminus JHS88_07805 PF00501 AMP-binding enzyme JHS88_07810 PF04303 PrpF protein JHS88_07815 PF00694 Aconitase C-terminal domain JHS88_07815 PF00330 Aconitase family (aconitate hydratase) JHS88_07820 PF00285 Citrate synthase, C-terminal domain JHS88_07850 PF01970 Tripartite tricarboxylate transporter TctA family JHS88_07855 PF01925 Sulfite exporter TauE/SafE JHS88_07865 PF05844 YopD protein JHS88_07875 PF07720 Tetratricopeptide repeat JHS88_07880 PF04792 V antigen (LcrV) protein JHS88_07885 PF07216 LcrG protein JHS88_07890 PF09621 Type III secretion system regulator (LcrR) JHS88_07895 PF00771 FHIPEP family JHS88_07915 PF09059 TyeA JHS88_07920 PF07201 HrpJ-like domain JHS88_07925 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JHS88_07925 PF02874 ATP synthase alpha/beta family, beta-barrel domain JHS88_07925 PF18269 T3SS EscN ATPase C-terminal domain JHS88_07940 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JHS88_07945 PF00813 FliP family JHS88_07950 PF01313 Bacterial export proteins, family 3 JHS88_07955 PF01311 Bacterial export proteins, family 1 JHS88_07960 PF01312 FlhB HrpN YscU SpaS Family JHS88_07965 PF00440 Bacterial regulatory proteins, tetR family JHS88_07965 PF08360 QacR-like protein, C-terminal region JHS88_07980 PF13737 Transposase DDE domain JHS88_08010 PF02661 Fic/DOC family JHS88_08020 PF02108 Flagellar assembly protein FliH JHS88_08030 PF01514 Secretory protein of YscJ/FliF family JHS88_08035 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI JHS88_08045 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) JHS88_08050 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF JHS88_08060 PF16697 Inner membrane component of T3SS, cytoplasmic domain JHS88_08060 PF16693 Inner membrane component of T3SS, periplasmic domain JHS88_08065 PF00263 Bacterial type II and III secretion system protein JHS88_08065 PF03958 Bacterial type II/III secretion system short domain JHS88_08080 PF12833 Helix-turn-helix domain JHS88_08100 PF00171 Aldehyde dehydrogenase family JHS88_08105 PF00158 Sigma-54 interaction domain JHS88_08105 PF02954 Bacterial regulatory protein, Fis family JHS88_08105 PF01590 GAF domain JHS88_08130 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JHS88_08130 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain JHS88_08135 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JHS88_08140 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain JHS88_08140 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain JHS88_08145 PF12431 Transcriptional regulator JHS88_08145 PF00072 Response regulator receiver domain JHS88_08150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_08150 PF00989 PAS fold JHS88_08150 PF17203 Single cache domain 3 JHS88_08150 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain JHS88_08165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS88_08180 PF03150 Di-haem cytochrome c peroxidase JHS88_08180 PF00034 Cytochrome c JHS88_08185 PF00696 Amino acid kinase family JHS88_08185 PF13840 ACT domain JHS88_08190 PF06339 Ectoine synthase JHS88_08195 PF00202 Aminotransferase class-III JHS88_08200 PF00583 Acetyltransferase (GNAT) family JHS88_08205 PF02028 BCCT, betaine/carnitine/choline family transporter JHS88_08220 PF00005 ABC transporter JHS88_08220 PF00571 CBS domain JHS88_08225 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_08230 PF04069 Substrate binding domain of ABC-type glycine betaine transport system JHS88_08240 PF00501 AMP-binding enzyme JHS88_08260 PF00072 Response regulator receiver domain JHS88_08260 PF00486 Transcriptional regulatory protein, C terminal JHS88_08265 PF08521 Two-component sensor kinase N-terminal JHS88_08265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_08265 PF00512 His Kinase A (phospho-acceptor) domain JHS88_08270 PF00884 Sulfatase JHS88_08295 PF01235 Sodium:alanine symporter family JHS88_08305 PF01810 LysE type translocator JHS88_08310 PF02074 Carboxypeptidase Taq (M32) metallopeptidase JHS88_08315 PF03279 Bacterial lipid A biosynthesis acyltransferase JHS88_08320 PF13520 Amino acid permease JHS88_08330 PF04204 Homoserine O-succinyltransferase JHS88_08345 PF00990 Diguanylate cyclase, GGDEF domain JHS88_08345 PF03707 Bacterial signalling protein N terminal repeat JHS88_08345 PF00563 EAL domain JHS88_08350 PF00512 His Kinase A (phospho-acceptor) domain JHS88_08350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_08350 PF00072 Response regulator receiver domain JHS88_08350 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JHS88_08350 PF01627 Hpt domain JHS88_08350 PF00672 HAMP domain JHS88_08365 PF00132 Bacterial transferase hexapeptide (six repeats) JHS88_08365 PF12464 Maltose acetyltransferase JHS88_08375 PF01928 CYTH domain JHS88_08385 PF04237 YjbR JHS88_08390 PF01047 MarR family JHS88_08400 PF12833 Helix-turn-helix domain JHS88_08405 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JHS88_08405 PF01411 tRNA synthetases class II (A) JHS88_08405 PF02272 DHHA1 domain JHS88_08415 PF00563 EAL domain JHS88_08415 PF00196 Bacterial regulatory proteins, luxR family JHS88_08420 PF01368 DHH family JHS88_08420 PF02833 DHHA2 domain JHS88_08425 PF00202 Aminotransferase class-III JHS88_08430 PF00171 Aldehyde dehydrogenase family JHS88_08435 PF04371 Porphyromonas-type peptidyl-arginine deiminase JHS88_08440 PF00795 Carbon-nitrogen hydrolase JHS88_08445 PF01266 FAD dependent oxidoreductase JHS88_08450 PF00171 Aldehyde dehydrogenase family JHS88_08455 PF07883 Cupin domain JHS88_08455 PF01381 Helix-turn-helix JHS88_08460 PF07722 Peptidase C26 JHS88_08465 PF00120 Glutamine synthetase, catalytic domain JHS88_08470 PF03553 Na+/H+ antiporter family JHS88_08525 PF13276 HTH-like domain JHS88_08525 PF00665 Integrase core domain JHS88_08525 PF13333 Integrase core domain JHS88_08535 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system JHS88_08540 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system JHS88_08650 PF13099 Domain of unknown function (DUF3944) JHS88_08650 PF03981 Ubiquinol-cytochrome C chaperone JHS88_08660 PF01337 Barstar (barnase inhibitor) JHS88_08695 PF00857 Isochorismatase family JHS88_08760 PF07516 SecA Wing and Scaffold domain JHS88_08760 PF01043 SecA preprotein cross-linking domain JHS88_08760 PF07517 SecA DEAD-like domain JHS88_08760 PF02810 SEC-C motif JHS88_08815 PF13737 Transposase DDE domain JHS88_08860 PF00589 Phage integrase family JHS88_08955 PF04463 Protein of unknown function (DUF523) JHS88_09005 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain JHS88_09005 PF02951 Prokaryotic glutathione synthetase, N-terminal domain JHS88_09025 PF01844 HNH endonuclease JHS88_09080 PF13737 Transposase DDE domain JHS88_09195 PF00583 Acetyltransferase (GNAT) family JHS88_09225 PF00589 Phage integrase family JHS88_09225 PF13495 Phage integrase, N-terminal SAM-like domain JHS88_09240 PF13302 Acetyltransferase (GNAT) domain JHS88_09245 PF18024 Helix-turn-helix domain JHS88_09245 PF00158 Sigma-54 interaction domain JHS88_09250 PF05128 Domain of unknown function (DUF697) JHS88_09255 PF04317 YcjX-like family, DUF463 JHS88_09270 PF04715 Anthranilate synthase component I, N terminal region JHS88_09270 PF00425 chorismate binding enzyme JHS88_09275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_09275 PF00512 His Kinase A (phospho-acceptor) domain JHS88_09275 PF09308 LuxQ, periplasmic JHS88_09275 PF00072 Response regulator receiver domain JHS88_09285 PF00293 NUDIX domain JHS88_09290 PF03222 Tryptophan/tyrosine permease family JHS88_09295 PF03313 Serine dehydratase alpha chain JHS88_09295 PF03315 Serine dehydratase beta chain JHS88_09300 PF00563 EAL domain JHS88_09300 PF04940 Sensors of blue-light using FAD JHS88_09310 PF01242 6-pyruvoyl tetrahydropterin synthase JHS88_09315 PF12729 Four helix bundle sensory module for signal transduction JHS88_09315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS88_09315 PF00672 HAMP domain JHS88_09320 PF01336 OB-fold nucleic acid binding domain JHS88_09320 PF00152 tRNA synthetases class II (D, K and N) JHS88_09330 PF00155 Aminotransferase class I and II JHS88_09330 PF00392 Bacterial regulatory proteins, gntR family JHS88_09345 PF00155 Aminotransferase class I and II JHS88_09365 PF00672 HAMP domain JHS88_09365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS88_09370 PF02028 BCCT, betaine/carnitine/choline family transporter JHS88_09375 PF01047 MarR family JHS88_09380 PF00072 Response regulator receiver domain JHS88_09380 PF00196 Bacterial regulatory proteins, luxR family JHS88_09385 PF07730 Histidine kinase JHS88_09385 PF17200 Single Cache domain 2 JHS88_09390 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JHS88_09400 PF03480 Bacterial extracellular solute-binding protein, family 7 JHS88_09415 PF00753 Metallo-beta-lactamase superfamily JHS88_09420 PF05951 Bacterial protein of unknown function (DUF882) JHS88_09425 PF01471 Putative peptidoglycan binding domain JHS88_09425 PF03734 L,D-transpeptidase catalytic domain JHS88_09450 PF00925 GTP cyclohydrolase II JHS88_09460 PF03918 Cytochrome C biogenesis protein JHS88_09465 PF08534 Redoxin JHS88_09470 PF01578 Cytochrome C assembly protein JHS88_09470 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal JHS88_09475 PF03916 Polysulphide reductase, NrfD JHS88_09480 PF13247 4Fe-4S dicluster domain JHS88_09490 PF02335 Cytochrome c552 JHS88_09505 PF03989 DNA gyrase C-terminal domain, beta-propeller JHS88_09505 PF00521 DNA gyrase/topoisomerase IV, subunit A JHS88_09515 PF03477 ATP cone domain JHS88_09515 PF02867 Ribonucleotide reductase, barrel domain JHS88_09515 PF00317 Ribonucleotide reductase, all-alpha domain JHS88_09520 PF00268 Ribonucleotide reductase, small chain JHS88_09530 PF00994 Probable molybdopterin binding domain JHS88_09545 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JHS88_09550 PF16653 Saccharopine dehydrogenase C-terminal domain JHS88_09550 PF03435 Saccharopine dehydrogenase NADP binding domain JHS88_09555 PF00202 Aminotransferase class-III JHS88_09580 PF01066 CDP-alcohol phosphatidyltransferase JHS88_09585 PF02151 UvrB/uvrC motif JHS88_09585 PF01541 GIY-YIG catalytic domain JHS88_09585 PF08459 UvrC Helix-hairpin-helix N-terminal JHS88_09590 PF00196 Bacterial regulatory proteins, luxR family JHS88_09590 PF00072 Response regulator receiver domain JHS88_09595 PF00136 DNA polymerase family B JHS88_09595 PF03104 DNA polymerase family B, exonuclease domain JHS88_09605 PF01132 Elongation factor P (EF-P) OB domain JHS88_09605 PF08207 Elongation factor P (EF-P) KOW-like domain JHS88_09605 PF09285 Elongation factor P, C-terminal JHS88_09610 PF04269 Protein of unknown function, DUF440 JHS88_09615 PF00849 RNA pseudouridylate synthase JHS88_09615 PF01479 S4 domain JHS88_09625 PF01300 Telomere recombination JHS88_09630 PF02811 PHP domain JHS88_09635 PF08056 Tryptophan operon leader peptide JHS88_09640 PF04715 Anthranilate synthase component I, N terminal region JHS88_09640 PF00425 chorismate binding enzyme JHS88_09645 PF00117 Glutamine amidotransferase class-I JHS88_09650 PF02885 Glycosyl transferase family, helical bundle domain JHS88_09650 PF00591 Glycosyl transferase family, a/b domain JHS88_09655 PF00218 Indole-3-glycerol phosphate synthase JHS88_09655 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase JHS88_09660 PF00291 Pyridoxal-phosphate dependent enzyme JHS88_09665 PF00290 Tryptophan synthase alpha chain JHS88_09670 PF00027 Cyclic nucleotide-binding domain JHS88_09670 PF13545 Crp-like helix-turn-helix domain JHS88_09675 PF00501 AMP-binding enzyme JHS88_09675 PF13193 AMP-binding enzyme C-terminal domain JHS88_09680 PF00375 Sodium:dicarboxylate symporter family JHS88_09685 PF17327 Acyl homoserine lactone synthase JHS88_09690 PF00072 Response regulator receiver domain JHS88_09690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_09700 PF04279 Intracellular septation protein A JHS88_09705 PF03061 Thioesterase superfamily JHS88_09710 PF03795 YCII-related domain JHS88_09720 PF01717 Cobalamin-independent synthase, Catalytic domain JHS88_09720 PF08267 Cobalamin-independent synthase, N-terminal domain JHS88_09725 PF03466 LysR substrate binding domain JHS88_09725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_09740 PF00990 Diguanylate cyclase, GGDEF domain JHS88_09740 PF00360 Phytochrome region JHS88_09740 PF01590 GAF domain JHS88_09740 PF00563 EAL domain JHS88_09745 PF04055 Radical SAM superfamily JHS88_09745 PF11842 Domain of unknown function (DUF3362) JHS88_09745 PF08497 Radical SAM N-terminal JHS88_09750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS88_09750 PF00672 HAMP domain JHS88_09755 PF00072 Response regulator receiver domain JHS88_09755 PF00486 Transcriptional regulatory protein, C terminal JHS88_09760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_09760 PF00672 HAMP domain JHS88_09760 PF00512 His Kinase A (phospho-acceptor) domain JHS88_09780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_09780 PF03466 LysR substrate binding domain JHS88_09785 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS88_09785 PF00529 HlyD membrane-fusion protein of T1SS JHS88_09795 PF08267 Cobalamin-independent synthase, N-terminal domain JHS88_09795 PF01717 Cobalamin-independent synthase, Catalytic domain JHS88_09805 PF02311 AraC-like ligand binding domain JHS88_09805 PF12833 Helix-turn-helix domain JHS88_09810 PF00857 Isochorismatase family JHS88_09815 PF00005 ABC transporter JHS88_09815 PF02687 FtsX-like permease family JHS88_09815 PF12704 MacB-like periplasmic core domain JHS88_09820 PF00005 ABC transporter JHS88_09820 PF02687 FtsX-like permease family JHS88_09820 PF12704 MacB-like periplasmic core domain JHS88_09825 PF00005 ABC transporter JHS88_09825 PF12704 MacB-like periplasmic core domain JHS88_09825 PF02687 FtsX-like permease family JHS88_09835 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS88_09855 PF00085 Thioredoxin JHS88_09860 PF02683 Cytochrome C biogenesis protein transmembrane region JHS88_09860 PF11412 Disulphide bond corrector protein DsbC JHS88_09870 PF03466 LysR substrate binding domain JHS88_09870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_09875 PF00072 Response regulator receiver domain JHS88_09875 PF00196 Bacterial regulatory proteins, luxR family JHS88_09880 PF00512 His Kinase A (phospho-acceptor) domain JHS88_09880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_09885 PF13247 4Fe-4S dicluster domain JHS88_09890 PF03916 Polysulphide reductase, NrfD JHS88_09895 PF01568 Molydopterin dinucleotide binding domain JHS88_09895 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JHS88_09895 PF00384 Molybdopterin oxidoreductase JHS88_09900 PF00034 Cytochrome c JHS88_09905 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JHS88_09910 PF04403 Paraquat-inducible protein A JHS88_09915 PF02470 MlaD protein JHS88_09925 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase JHS88_09935 PF00535 Glycosyl transferase family 2 JHS88_09940 PF01370 NAD dependent epimerase/dehydratase family JHS88_09950 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JHS88_09955 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JHS88_09960 PF18073 Rubredoxin metal binding domain JHS88_09965 PF06305 Lipopolysaccharide assembly protein A domain JHS88_09970 PF00216 Bacterial DNA-binding protein JHS88_09975 PF00575 S1 RNA binding domain JHS88_09980 PF02224 Cytidylate kinase JHS88_09985 PF01343 Peptidase family S49 JHS88_09985 PF08496 Peptidase family S49 N-terminal JHS88_09990 PF00106 short chain dehydrogenase JHS88_10005 PF01336 OB-fold nucleic acid binding domain JHS88_10005 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JHS88_10005 PF14579 Helix-hairpin-helix motif JHS88_10005 PF02811 PHP domain JHS88_10005 PF07733 Bacterial DNA polymerase III alpha NTPase domain JHS88_10010 PF01584 CheW-like domain JHS88_10010 PF00072 Response regulator receiver domain JHS88_10015 PF00480 ROK family JHS88_10020 PF00224 Pyruvate kinase, barrel domain JHS88_10020 PF02887 Pyruvate kinase, alpha/beta domain JHS88_10025 PF01734 Patatin-like phospholipase JHS88_10040 PF00209 Sodium:neurotransmitter symporter family JHS88_10055 PF02378 Phosphotransferase system, EIIC JHS88_10055 PF00367 phosphotransferase system, EIIB JHS88_10060 PF01026 TatD related DNase JHS88_10065 PF09115 DNA polymerase III, delta subunit, C terminal JHS88_10070 PF02223 Thymidylate kinase JHS88_10075 PF02618 YceG-like family JHS88_10080 PF01063 Amino-transferase class IV JHS88_10085 PF02801 Beta-ketoacyl synthase, C-terminal domain JHS88_10085 PF00109 Beta-ketoacyl synthase, N-terminal domain JHS88_10090 PF00550 Phosphopantetheine attachment site JHS88_10100 PF00698 Acyl transferase domain JHS88_10105 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JHS88_10105 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JHS88_10110 PF02504 Fatty acid synthesis protein JHS88_10115 PF01783 Ribosomal L32p protein family JHS88_10120 PF02620 Large ribosomal RNA subunit accumulation protein YceD JHS88_10125 PF02545 Maf-like protein JHS88_10130 PF01479 S4 domain JHS88_10130 PF00849 RNA pseudouridylate synthase JHS88_10135 PF12111 Polyribonucleotide phosphorylase C terminal JHS88_10135 PF10150 Ribonuclease E/G family JHS88_10135 PF00575 S1 RNA binding domain JHS88_10140 PF01740 STAS domain JHS88_10140 PF00916 Sulfate permease family JHS88_10145 PF01451 Low molecular weight phosphotyrosine protein phosphatase JHS88_10150 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP JHS88_10150 PF12557 Cob(I)alamin adenosyltransferase N terminal JHS88_10160 PF00485 Phosphoribulokinase / Uridine kinase family JHS88_10165 PF10609 NUBPL iron-transfer P-loop NTPase JHS88_10170 PF09334 tRNA synthetases class I (M) JHS88_10170 PF01588 Putative tRNA binding domain JHS88_10180 PF07840 FadR C-terminal domain JHS88_10180 PF00392 Bacterial regulatory proteins, gntR family JHS88_10185 PF06450 Bacterial Na+/H+ antiporter B (NhaB) JHS88_10190 PF02600 Disulfide bond formation protein DsbB JHS88_10195 PF01043 SecA preprotein cross-linking domain JHS88_10195 PF07516 SecA Wing and Scaffold domain JHS88_10195 PF07517 SecA DEAD-like domain JHS88_10195 PF02810 SEC-C motif JHS88_10200 PF01207 Dihydrouridine synthase (Dus) JHS88_10205 PF00990 Diguanylate cyclase, GGDEF domain JHS88_10205 PF00072 Response regulator receiver domain JHS88_10210 PF02903 Alpha amylase, N-terminal ig-like domain JHS88_10210 PF00128 Alpha amylase, catalytic domain JHS88_10215 PF00005 ABC transporter JHS88_10220 PF02653 Branched-chain amino acid transport system / permease component JHS88_10230 PF04217 Protein of unknown function, DUF412 JHS88_10235 PF00871 Acetokinase family JHS88_10240 PF01515 Phosphate acetyl/butaryl transferase JHS88_10240 PF07085 DRTGG domain JHS88_10245 PF13194 Domain of unknown function (DUF4010) JHS88_10255 PF13409 Glutathione S-transferase, N-terminal domain JHS88_10260 PF00005 ABC transporter JHS88_10260 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS88_10265 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS88_10265 PF00005 ABC transporter JHS88_10270 PF12911 N-terminal TM domain of oligopeptide transport permease C JHS88_10270 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_10275 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_10280 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JHS88_10285 PF02391 MoaE protein JHS88_10290 PF02597 ThiS family JHS88_10295 PF01967 MoaC family JHS88_10300 PF00994 Probable molybdopterin binding domain JHS88_10305 PF04055 Radical SAM superfamily JHS88_10305 PF06463 Molybdenum Cofactor Synthesis C JHS88_10310 PF01933 Uncharacterised protein family UPF0052 JHS88_10315 PF01627 Hpt domain JHS88_10320 PF00072 Response regulator receiver domain JHS88_10320 PF00158 Sigma-54 interaction domain JHS88_10320 PF02954 Bacterial regulatory protein, Fis family JHS88_10325 PF12344 Ultra-violet resistance protein B JHS88_10325 PF00271 Helicase conserved C-terminal domain JHS88_10325 PF04851 Type III restriction enzyme, res subunit JHS88_10325 PF02151 UvrB/uvrC motif JHS88_10325 PF17757 UvrB interaction domain JHS88_10335 PF02508 Rnf-Nqr subunit, membrane protein JHS88_10340 PF04060 Putative Fe-S cluster JHS88_10345 PF13375 RnfC Barrel sandwich hybrid domain JHS88_10345 PF10531 SLBB domain JHS88_10345 PF12838 4Fe-4S dicluster domain JHS88_10345 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JHS88_10350 PF03116 NQR2, RnfD, RnfE family JHS88_10355 PF04205 FMN-binding domain JHS88_10360 PF02508 Rnf-Nqr subunit, membrane protein JHS88_10365 PF10576 Iron-sulfur binding domain of endonuclease III JHS88_10365 PF00633 Helix-hairpin-helix motif JHS88_10365 PF00730 HhH-GPD superfamily base excision DNA repair protein JHS88_10370 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JHS88_10375 PF10952 Protein of unknown function (DUF2753) JHS88_10380 PF00691 OmpA family JHS88_10380 PF18393 MotY N-terminal domain JHS88_10385 PF00929 Exonuclease JHS88_10390 PF13726 Na+-H+ antiporter family JHS88_10390 PF03553 Na+/H+ antiporter family JHS88_10410 PF02556 Preprotein translocase subunit SecB JHS88_10430 PF05840 Bacteriophage replication gene A protein (GPA) JHS88_10455 PF06892 Phage regulatory protein CII (CP76) JHS88_10475 PF01844 HNH endonuclease JHS88_10495 PF00145 C-5 cytosine-specific DNA methylase JHS88_10505 PF00462 Glutaredoxin JHS88_10510 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JHS88_10510 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JHS88_10525 PF00465 Iron-containing alcohol dehydrogenase JHS88_10525 PF00171 Aldehyde dehydrogenase family JHS88_10530 PF01914 MarC family integral membrane protein JHS88_10535 PF00520 Ion transport protein JHS88_10535 PF00027 Cyclic nucleotide-binding domain JHS88_10540 PF01118 Semialdehyde dehydrogenase, NAD binding domain JHS88_10540 PF02774 Semialdehyde dehydrogenase, dimerisation domain JHS88_10545 PF03553 Na+/H+ antiporter family JHS88_10560 PF04245 37-kD nucleoid-associated bacterial protein JHS88_10565 PF07208 Protein of unknown function (DUF1414) JHS88_10570 PF00884 Sulfatase JHS88_10570 PF11893 Domain of unknown function (DUF3413) JHS88_10580 PF00850 Histone deacetylase domain JHS88_10585 PF00106 short chain dehydrogenase JHS88_10595 PF01131 DNA topoisomerase JHS88_10595 PF01751 Toprim domain JHS88_10600 PF00881 Nitroreductase family JHS88_10605 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JHS88_10605 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS88_10610 PF01343 Peptidase family S49 JHS88_10615 PF00710 Asparaginase, N-terminal JHS88_10615 PF17763 Glutaminase/Asparaginase C-terminal domain JHS88_10620 PF07023 Protein of unknown function (DUF1315) JHS88_10630 PF01641 SelR domain JHS88_10635 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JHS88_10635 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JHS88_10640 PF01263 Aldose 1-epimerase JHS88_10645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS88_10645 PF00672 HAMP domain JHS88_10645 PF02743 Cache domain JHS88_10650 PF13847 Methyltransferase domain JHS88_10665 PF00245 Alkaline phosphatase JHS88_10675 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JHS88_10680 PF03992 Antibiotic biosynthesis monooxygenase JHS88_10685 PF00924 Mechanosensitive ion channel JHS88_10685 PF05552 Conserved TM helix JHS88_10690 PF03692 Putative zinc- or iron-chelating domain JHS88_10695 PF04226 Transglycosylase associated protein JHS88_10700 PF03692 Putative zinc- or iron-chelating domain JHS88_10710 PF03313 Serine dehydratase alpha chain JHS88_10715 PF01042 Endoribonuclease L-PSP JHS88_10725 PF00230 Major intrinsic protein JHS88_10730 PF13662 Toprim domain JHS88_10730 PF02132 RecR protein JHS88_10735 PF02575 YbaB/EbfC DNA-binding family JHS88_10740 PF12169 DNA polymerase III subunits gamma and tau domain III JHS88_10740 PF12170 DNA polymerase III tau subunit V interacting with alpha JHS88_10740 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding JHS88_10745 PF00156 Phosphoribosyl transferase domain JHS88_10750 PF04304 Protein of unknown function (DUF454) JHS88_10755 PF00072 Response regulator receiver domain JHS88_10760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_10760 PF03466 LysR substrate binding domain JHS88_10765 PF00156 Phosphoribosyl transferase domain JHS88_10770 PF02674 Colicin V production protein JHS88_10775 PF05036 Sporulation related domain JHS88_10780 PF02875 Mur ligase family, glutamate ligase domain JHS88_10780 PF08245 Mur ligase middle domain JHS88_10785 PF01039 Carboxyl transferase domain JHS88_10785 PF17848 Acetyl-coA carboxylase zinc finger domain JHS88_10790 PF01416 tRNA pseudouridine synthase JHS88_10800 PF02774 Semialdehyde dehydrogenase, dimerisation domain JHS88_10800 PF01118 Semialdehyde dehydrogenase, NAD binding domain JHS88_10805 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JHS88_10805 PF11890 Domain of unknown function (DUF3410) JHS88_10805 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JHS88_10810 PF00109 Beta-ketoacyl synthase, N-terminal domain JHS88_10810 PF02801 Beta-ketoacyl synthase, C-terminal domain JHS88_10815 PF01266 FAD dependent oxidoreductase JHS88_10815 PF05430 S-adenosyl-L-methionine-dependent methyltransferase JHS88_10820 PF03358 NADPH-dependent FMN reductase JHS88_10825 PF08891 YfcL protein JHS88_10830 PF04315 Elongation factor P hydroxylase JHS88_10835 PF03458 UPF0126 domain JHS88_10840 PF01264 Chorismate synthase JHS88_10845 PF05175 Methyltransferase small domain JHS88_10850 PF01713 Smr domain JHS88_10855 PF00300 Histidine phosphatase superfamily (branch 1) JHS88_10860 PF00675 Insulinase (Peptidase family M16) JHS88_10860 PF16187 Middle or third domain of peptidase_M16 JHS88_10860 PF05193 Peptidase M16 inactive domain JHS88_10870 PF00378 Enoyl-CoA hydratase/isomerase JHS88_10870 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JHS88_10870 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JHS88_10875 PF02803 Thiolase, C-terminal domain JHS88_10875 PF00108 Thiolase, N-terminal domain JHS88_10880 PF04542 Sigma-70 region 2 JHS88_10880 PF08281 Sigma-70, region 4 JHS88_10895 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JHS88_10900 PF04333 MlaA lipoprotein JHS88_10910 PF03918 Cytochrome C biogenesis protein JHS88_10915 PF08534 Redoxin JHS88_10920 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal JHS88_10920 PF01578 Cytochrome C assembly protein JHS88_10925 PF03100 CcmE JHS88_10930 PF04995 Heme exporter protein D (CcmD) JHS88_10935 PF01578 Cytochrome C assembly protein JHS88_10940 PF03379 CcmB protein JHS88_10945 PF00005 ABC transporter JHS88_10955 PF01584 CheW-like domain JHS88_10965 PF13614 AAA domain JHS88_10970 PF00072 Response regulator receiver domain JHS88_10970 PF01339 CheB methylesterase JHS88_10975 PF01584 CheW-like domain JHS88_10975 PF02895 Signal transducing histidine kinase, homodimeric domain JHS88_10975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_10975 PF01627 Hpt domain JHS88_10975 PF00072 Response regulator receiver domain JHS88_10980 PF04344 Chemotaxis phosphatase, CheZ JHS88_10985 PF00072 Response regulator receiver domain JHS88_10990 PF04545 Sigma-70, region 4 JHS88_10990 PF04539 Sigma-70 region 3 JHS88_10990 PF04542 Sigma-70 region 2 JHS88_10995 PF10609 NUBPL iron-transfer P-loop NTPase JHS88_11000 PF00448 SRP54-type protein, GTPase domain JHS88_11005 PF00771 FHIPEP family JHS88_11010 PF01312 FlhB HrpN YscU SpaS Family JHS88_11015 PF01311 Bacterial export proteins, family 1 JHS88_11020 PF01313 Bacterial export proteins, family 3 JHS88_11025 PF00813 FliP family JHS88_11030 PF04347 Flagellar biosynthesis protein, FliO JHS88_11035 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JHS88_11040 PF02154 Flagellar motor switch protein FliM JHS88_11040 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JHS88_11060 PF18269 T3SS EscN ATPase C-terminal domain JHS88_11060 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JHS88_11070 PF14842 FliG N-terminal domain JHS88_11070 PF14841 FliG middle domain JHS88_11070 PF01706 FliG C-terminal domain JHS88_11075 PF08345 Flagellar M-ring protein C-terminal JHS88_11075 PF01514 Secretory protein of YscJ/FliF family JHS88_11080 PF02049 Flagellar hook-basal body complex protein FliE JHS88_11085 PF00158 Sigma-54 interaction domain JHS88_11085 PF02954 Bacterial regulatory protein, Fis family JHS88_11085 PF00072 Response regulator receiver domain JHS88_11090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_11090 PF13188 PAS domain JHS88_11090 PF00512 His Kinase A (phospho-acceptor) domain JHS88_11095 PF06490 Flagellar regulatory protein FleQ JHS88_11095 PF00158 Sigma-54 interaction domain JHS88_11095 PF02954 Bacterial regulatory protein, Fis family JHS88_11100 PF02561 Flagellar protein FliS JHS88_11110 PF07196 Flagellin hook IN motif JHS88_11110 PF07195 Flagellar hook-associated protein 2 C-terminus JHS88_11110 PF02465 Flagellar hook-associated protein 2 N-terminus JHS88_11115 PF03646 FlaG protein JHS88_11120 PF00700 Bacterial flagellin C-terminal helical region JHS88_11120 PF07196 Flagellin hook IN motif JHS88_11120 PF00669 Bacterial flagellin N-terminal helical region JHS88_11125 PF00669 Bacterial flagellin N-terminal helical region JHS88_11125 PF07196 Flagellin hook IN motif JHS88_11125 PF00700 Bacterial flagellin C-terminal helical region JHS88_11130 PF00700 Bacterial flagellin C-terminal helical region JHS88_11130 PF07196 Flagellin hook IN motif JHS88_11130 PF00669 Bacterial flagellin N-terminal helical region JHS88_11135 PF04261 Dyp-type peroxidase family JHS88_11140 PF11143 Protein of unknown function (DUF2919) JHS88_11160 PF03960 ArsC family JHS88_11165 PF07687 Peptidase dimerisation domain JHS88_11165 PF01546 Peptidase family M20/M25/M40 JHS88_11180 PF06804 NlpB/DapX lipoprotein JHS88_11185 PF00701 Dihydrodipicolinate synthetase family JHS88_11190 PF01842 ACT domain JHS88_11195 PF00578 AhpC/TSA family JHS88_11200 PF01594 AI-2E family transporter JHS88_11210 PF01435 Peptidase family M48 JHS88_11210 PF13181 Tetratricopeptide repeat JHS88_11215 PF03960 ArsC family JHS88_11220 PF03358 NADPH-dependent FMN reductase JHS88_11235 PF00860 Permease family JHS88_11245 PF00586 AIR synthase related protein, N-terminal domain JHS88_11245 PF02769 AIR synthase related protein, C-terminal domain JHS88_11250 PF00551 Formyl transferase JHS88_11255 PF13230 Glutamine amidotransferases class-II JHS88_11260 PF13580 SIS domain JHS88_11265 PF09317 Domain of unknown function (DUF1974) JHS88_11265 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JHS88_11265 PF02770 Acyl-CoA dehydrogenase, middle domain JHS88_11265 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JHS88_11275 PF00583 Acetyltransferase (GNAT) family JHS88_11295 PF00929 Exonuclease JHS88_11300 PF00075 RNase H JHS88_11305 PF08241 Methyltransferase domain JHS88_11310 PF16123 Hydroxyacylglutathione hydrolase C-terminus JHS88_11310 PF00753 Metallo-beta-lactamase superfamily JHS88_11315 PF01464 Transglycosylase SLT domain JHS88_11315 PF01476 LysM domain JHS88_11325 PF03372 Endonuclease/Exonuclease/phosphatase family JHS88_11330 PF00543 Nitrogen regulatory protein P-II JHS88_11335 PF00034 Cytochrome c JHS88_11340 PF11734 TilS substrate C-terminal domain JHS88_11340 PF09179 TilS substrate binding domain JHS88_11340 PF01171 PP-loop family JHS88_11345 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit JHS88_11350 PF01336 OB-fold nucleic acid binding domain JHS88_11350 PF02811 PHP domain JHS88_11350 PF14579 Helix-hairpin-helix motif JHS88_11350 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JHS88_11350 PF07733 Bacterial DNA polymerase III alpha NTPase domain JHS88_11355 PF01351 Ribonuclease HII JHS88_11360 PF02684 Lipid-A-disaccharide synthetase JHS88_11365 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 JHS88_11365 PF00132 Bacterial transferase hexapeptide (six repeats) JHS88_11370 PF07977 FabA-like domain JHS88_11375 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD JHS88_11375 PF00132 Bacterial transferase hexapeptide (six repeats) JHS88_11380 PF03938 Outer membrane protein (OmpH-like) JHS88_11385 PF01103 Surface antigen JHS88_11385 PF07244 Surface antigen variable number repeat JHS88_11390 PF17820 PDZ domain JHS88_11390 PF02163 Peptidase family M50 JHS88_11395 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain JHS88_11395 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase JHS88_11395 PF13288 DXP reductoisomerase C-terminal domain JHS88_11405 PF01255 Putative undecaprenyl diphosphate synthase JHS88_11410 PF01765 Ribosome recycling factor JHS88_11415 PF00696 Amino acid kinase family JHS88_11420 PF00889 Elongation factor TS JHS88_11425 PF00318 Ribosomal protein S2 JHS88_11430 PF00557 Metallopeptidase family M24 JHS88_11435 PF01842 ACT domain JHS88_11435 PF01909 Nucleotidyltransferase domain JHS88_11435 PF08335 GlnD PII-uridylyltransferase JHS88_11435 PF01966 HD domain JHS88_11440 PF11944 Protein of unknown function (DUF3461) JHS88_11445 PF00849 RNA pseudouridylate synthase JHS88_11450 PF04287 tRNA pseudouridine synthase C JHS88_11475 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 JHS88_11480 PF03806 AbgT putative transporter family JHS88_11485 PF00444 Ribosomal protein L36 JHS88_11490 PF01197 Ribosomal protein L31 JHS88_11495 PF18389 TrmO C-terminal domain JHS88_11495 PF01980 tRNA-methyltransferase O JHS88_11500 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JHS88_11500 PF03129 Anticodon binding domain JHS88_11500 PF04073 Aminoacyl-tRNA editing domain JHS88_11510 PF06786 Uncharacterised protein family (UPF0253) JHS88_11520 PF00209 Sodium:neurotransmitter symporter family JHS88_11535 PF01272 Transcription elongation factor, GreA/GreB, C-term JHS88_11535 PF03449 Transcription elongation factor, N-terminal JHS88_11540 PF00270 DEAD/DEAH box helicase JHS88_11540 PF00271 Helicase conserved C-terminal domain JHS88_11540 PF00570 HRDC domain JHS88_11540 PF16124 RecQ zinc-binding JHS88_11540 PF09382 RQC domain JHS88_11545 PF00817 impB/mucB/samB family JHS88_11545 PF11799 impB/mucB/samB family C-terminal domain JHS88_11545 PF11798 IMS family HHH motif JHS88_11550 PF00817 impB/mucB/samB family JHS88_11550 PF11799 impB/mucB/samB family C-terminal domain JHS88_11550 PF11798 IMS family HHH motif JHS88_11570 PF02463 RecF/RecN/SMC N terminal domain JHS88_11575 PF00580 UvrD/REP helicase N-terminal domain JHS88_11575 PF13361 UvrD-like helicase C-terminal domain JHS88_11635 PF02424 ApbE family JHS88_11640 PF00970 Oxidoreductase FAD-binding domain JHS88_11640 PF00111 2Fe-2S iron-sulfur cluster binding domain JHS88_11640 PF00175 Oxidoreductase NAD-binding domain JHS88_11645 PF02508 Rnf-Nqr subunit, membrane protein JHS88_11650 PF02508 Rnf-Nqr subunit, membrane protein JHS88_11655 PF04205 FMN-binding domain JHS88_11660 PF03116 NQR2, RnfD, RnfE family JHS88_11665 PF11973 NQRA C-terminal domain JHS88_11665 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) JHS88_11670 PF01722 BolA-like protein JHS88_11675 PF05175 Methyltransferase small domain JHS88_11680 PF03923 Uncharacterized lipoprotein JHS88_11680 PF08139 Prokaryotic membrane lipoprotein lipid attachment site JHS88_11685 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JHS88_11690 PF07690 Major Facilitator Superfamily JHS88_11700 PF04542 Sigma-70 region 2 JHS88_11700 PF04545 Sigma-70, region 4 JHS88_11715 PF03502 Nucleoside-specific channel-forming protein, Tsx JHS88_11720 PF08546 Ketopantoate reductase PanE/ApbA C terminal JHS88_11720 PF02558 Ketopantoate reductase PanE/ApbA JHS88_11725 PF01965 DJ-1/PfpI family JHS88_11730 PF00266 Aminotransferase class-V JHS88_11735 PF17158 Membrane-associated sensor, integral membrane domain JHS88_11735 PF00990 Diguanylate cyclase, GGDEF domain JHS88_11740 PF02657 Fe-S metabolism associated domain JHS88_11745 PF00899 ThiF family JHS88_11750 PF06725 3D domain JHS88_11750 PF03562 MltA specific insert domain JHS88_11760 PF00583 Acetyltransferase (GNAT) family JHS88_11760 PF00696 Amino acid kinase family JHS88_11770 PF13538 UvrD-like helicase C-terminal domain JHS88_11775 PF12705 PD-(D/E)XK nuclease superfamily JHS88_11775 PF00580 UvrD/REP helicase N-terminal domain JHS88_11775 PF13361 UvrD-like helicase C-terminal domain JHS88_11780 PF17946 RecC C-terminal domain JHS88_11785 PF00884 Sulfatase JHS88_11785 PF11893 Domain of unknown function (DUF3413) JHS88_11795 PF03466 LysR substrate binding domain JHS88_11795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_11800 PF07130 YebG protein JHS88_11805 PF14602 Hexapeptide repeat of succinyl-transferase JHS88_11805 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle JHS88_11810 PF03009 Glycerophosphoryl diester phosphodiesterase family JHS88_11815 PF07690 Major Facilitator Superfamily JHS88_11820 PF00230 Major intrinsic protein JHS88_11825 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JHS88_11825 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JHS88_11830 PF00455 DeoR C terminal sensor domain JHS88_11830 PF08220 DeoR-like helix-turn-helix domain JHS88_11835 PF01266 FAD dependent oxidoreductase JHS88_11835 PF16901 C-terminal domain of alpha-glycerophosphate oxidase JHS88_11840 PF01544 CorA-like Mg2+ transporter protein JHS88_11855 PF01588 Putative tRNA binding domain JHS88_11860 PF00356 Bacterial regulatory proteins, lacI family JHS88_11875 PF00356 Bacterial regulatory proteins, lacI family JHS88_11880 PF01263 Aldose 1-epimerase JHS88_11885 PF00288 GHMP kinases N terminal domain JHS88_11885 PF08544 GHMP kinases C terminal JHS88_11885 PF10509 Galactokinase galactose-binding signature JHS88_11890 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain JHS88_11890 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain JHS88_11895 PF16363 GDP-mannose 4,6 dehydratase JHS88_11900 PF00356 Bacterial regulatory proteins, lacI family JHS88_11905 PF16353 Domain of unknown function(DUF4981) JHS88_11905 PF02837 Glycosyl hydrolases family 2, sugar binding domain JHS88_11905 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JHS88_11905 PF00703 Glycosyl hydrolases family 2 JHS88_11905 PF02929 Beta galactosidase small chain JHS88_11910 PF04074 YhcH/YjgK/YiaL JHS88_11915 PF13520 Amino acid permease JHS88_11920 PF03466 LysR substrate binding domain JHS88_11920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_11955 PF00437 Type II/IV secretion system protein JHS88_11985 PF00263 Bacterial type II and III secretion system protein JHS88_11985 PF04972 BON domain JHS88_11985 PF13629 Pilus formation protein N terminal region JHS88_12010 PF02805 Metal binding domain of Ada JHS88_12010 PF12833 Helix-turn-helix domain JHS88_12015 PF00501 AMP-binding enzyme JHS88_12025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_12025 PF03466 LysR substrate binding domain JHS88_12030 PF03144 Elongation factor Tu domain 2 JHS88_12030 PF00009 Elongation factor Tu GTP binding domain JHS88_12030 PF03764 Elongation factor G, domain IV JHS88_12030 PF00679 Elongation factor G C-terminus JHS88_12030 PF14492 Elongation Factor G, domain II JHS88_12035 PF18073 Rubredoxin metal binding domain JHS88_12045 PF18429 Domain of unknown function (DUF5609) JHS88_12055 PF01048 Phosphorylase superfamily JHS88_12060 PF01676 Metalloenzyme superfamily JHS88_12065 PF00591 Glycosyl transferase family, a/b domain JHS88_12065 PF02885 Glycosyl transferase family, helical bundle domain JHS88_12065 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain JHS88_12070 PF01791 DeoC/LacD family aldolase JHS88_12075 PF07670 Nucleoside recognition JHS88_12075 PF07662 Na+ dependent nucleoside transporter C-terminus JHS88_12075 PF01773 Na+ dependent nucleoside transporter N-terminus JHS88_12080 PF01026 TatD related DNase JHS88_12090 PF00009 Elongation factor Tu GTP binding domain JHS88_12090 PF16658 Class II release factor RF3, C-terminal domain JHS88_12090 PF03144 Elongation factor Tu domain 2 JHS88_12110 PF13508 Acetyltransferase (GNAT) domain JHS88_12115 PF02036 SCP-2 sterol transfer family JHS88_12120 PF00990 Diguanylate cyclase, GGDEF domain JHS88_12120 PF00563 EAL domain JHS88_12120 PF03707 Bacterial signalling protein N terminal repeat JHS88_12125 PF01136 Peptidase family U32 JHS88_12130 PF01136 Peptidase family U32 JHS88_12135 PF01554 MatE JHS88_12145 PF07719 Tetratricopeptide repeat JHS88_12145 PF13181 Tetratricopeptide repeat JHS88_12150 PF03725 3' exoribonuclease family, domain 2 JHS88_12150 PF00575 S1 RNA binding domain JHS88_12150 PF01138 3' exoribonuclease family, domain 1 JHS88_12150 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JHS88_12150 PF00013 KH domain JHS88_12155 PF00312 Ribosomal protein S15 JHS88_12160 PF09157 Pseudouridine synthase II TruB, C-terminal JHS88_12160 PF16198 tRNA pseudouridylate synthase B C-terminal domain JHS88_12160 PF01509 TruB family pseudouridylate synthase (N terminal domain) JHS88_12165 PF02033 Ribosome-binding factor A JHS88_12170 PF08364 Bacterial translation initiation factor IF-2 associated region JHS88_12170 PF11987 Translation-initiation factor 2 JHS88_12170 PF04760 Translation initiation factor IF-2, N-terminal region JHS88_12170 PF00009 Elongation factor Tu GTP binding domain JHS88_12175 PF00575 S1 RNA binding domain JHS88_12175 PF13184 NusA-like KH domain JHS88_12175 PF08529 NusA N-terminal domain JHS88_12180 PF02576 RimP N-terminal domain JHS88_12180 PF17384 RimP C-terminal SH3 domain JHS88_12195 PF03840 Preprotein translocase SecG subunit JHS88_12200 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JHS88_12200 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JHS88_12200 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JHS88_12200 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JHS88_12205 PF00809 Pterin binding enzyme JHS88_12210 PF00004 ATPase family associated with various cellular activities (AAA) JHS88_12210 PF17862 AAA+ lid domain JHS88_12210 PF06480 FtsH Extracellular JHS88_12210 PF01434 Peptidase family M41 JHS88_12215 PF01728 FtsJ-like methyltransferase JHS88_12220 PF01985 CRS1 / YhbY (CRM) domain JHS88_12225 PF03449 Transcription elongation factor, N-terminal JHS88_12225 PF01272 Transcription elongation factor, GreA/GreB, C-term JHS88_12230 PF13609 Gram-negative porin JHS88_12235 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family JHS88_12245 PF00579 tRNA synthetases class I (W and Y) JHS88_12250 PF08525 Opacity-associated protein A N-terminal motif JHS88_12250 PF01476 LysM domain JHS88_12250 PF01551 Peptidase family M23 JHS88_12255 PF00873 AcrB/AcrD/AcrF family JHS88_12265 PF01521 Iron-sulphur cluster biosynthesis JHS88_12270 PF00202 Aminotransferase class-III JHS88_12275 PF01594 AI-2E family transporter JHS88_12280 PF05175 Methyltransferase small domain JHS88_12280 PF08468 Methyltransferase small domain N-terminal JHS88_12285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_12285 PF00512 His Kinase A (phospho-acceptor) domain JHS88_12285 PF00072 Response regulator receiver domain JHS88_12285 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS88_12290 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JHS88_12295 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_12300 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_12300 PF12911 N-terminal TM domain of oligopeptide transport permease C JHS88_12305 PF00005 ABC transporter JHS88_12305 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS88_12310 PF00005 ABC transporter JHS88_12310 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS88_12320 PF01869 BadF/BadG/BcrA/BcrD ATPase family JHS88_12325 PF02838 Glycosyl hydrolase family 20, domain 2 JHS88_12325 PF00728 Glycosyl hydrolase family 20, catalytic domain JHS88_12330 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain JHS88_12330 PF06165 Glycosyltransferase family 36 JHS88_12335 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JHS88_12335 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JHS88_12335 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JHS88_12335 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JHS88_12340 PF00005 ABC transporter JHS88_12340 PF08402 TOBE domain JHS88_12350 PF13416 Bacterial extracellular solute-binding protein JHS88_12355 PF00909 Ammonium Transporter Family JHS88_12360 PF00543 Nitrogen regulatory protein P-II JHS88_12365 PF06062 Uncharacterised protein family (UPF0231) JHS88_12370 PF00330 Aconitase family (aconitate hydratase) JHS88_12370 PF06434 Aconitate hydratase 2 N-terminus JHS88_12370 PF11791 Aconitate B N-terminal domain JHS88_12375 PF01734 Patatin-like phospholipase JHS88_12380 PF00912 Transglycosylase JHS88_12380 PF00905 Penicillin binding protein transpeptidase domain JHS88_12380 PF14814 Bifunctional transglycosylase second domain JHS88_12385 PF08482 ATP-dependent helicase C-terminal JHS88_12385 PF04408 Helicase associated domain (HA2) JHS88_12385 PF00271 Helicase conserved C-terminal domain JHS88_12385 PF00270 DEAD/DEAH box helicase JHS88_12390 PF03749 Sugar fermentation stimulation protein RE domain JHS88_12390 PF17746 SfsA N-terminal OB domain JHS88_12395 PF01258 Prokaryotic dksA/traR C4-type zinc finger JHS88_12400 PF00749 tRNA synthetases class I (E and Q), catalytic domain JHS88_12405 PF01743 Poly A polymerase head domain JHS88_12405 PF12626 Polymerase A arginine-rich C-terminus JHS88_12405 PF12627 Probable RNA and SrmB- binding site of polymerase A JHS88_12410 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JHS88_12415 PF02548 Ketopantoate hydroxymethyltransferase JHS88_12420 PF02569 Pantoate-beta-alanine ligase JHS88_12425 PF03279 Bacterial lipid A biosynthesis acyltransferase JHS88_12430 PF01061 ABC-2 type transporter JHS88_12435 PF00005 ABC transporter JHS88_12440 PF00916 Sulfate permease family JHS88_12440 PF01740 STAS domain JHS88_12445 PF00484 Carbonic anhydrase JHS88_12450 PF00156 Phosphoribosyl transferase domain JHS88_12455 PF00440 Bacterial regulatory proteins, tetR family JHS88_12460 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS88_12460 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JHS88_12465 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JHS88_12465 PF00364 Biotin-requiring enzyme JHS88_12465 PF02817 e3 binding domain JHS88_12470 PF17831 Pyruvate dehydrogenase E1 component middle domain JHS88_12470 PF00456 Transketolase, thiamine diphosphate binding domain JHS88_12475 PF07729 FCD domain JHS88_12475 PF00392 Bacterial regulatory proteins, gntR family JHS88_12480 PF01510 N-acetylmuramoyl-L-alanine amidase JHS88_12485 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain JHS88_12485 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain JHS88_12490 PF07963 Prokaryotic N-terminal methylation motif JHS88_12490 PF00114 Pilin (bacterial filament) JHS88_12495 PF00437 Type II/IV secretion system protein JHS88_12495 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JHS88_12500 PF00482 Type II secretion system (T2SS), protein F JHS88_12505 PF01478 Type IV leader peptidase family JHS88_12505 PF06750 Bacterial Peptidase A24 N-terminal domain JHS88_12510 PF01121 Dephospho-CoA kinase JHS88_12515 PF07072 Cell division protein JHS88_12520 PF03884 DNA gyrase inhibitor YacG JHS88_12525 PF01245 Ribosomal protein L19 JHS88_12530 PF01746 tRNA (Guanine-1)-methyltransferase JHS88_12535 PF05239 PRC-barrel domain JHS88_12535 PF01782 RimM N-terminal domain JHS88_12540 PF00886 Ribosomal protein S16 JHS88_12545 PF00448 SRP54-type protein, GTPase domain JHS88_12545 PF02881 SRP54-type protein, helical bundle domain JHS88_12545 PF02978 Signal peptide binding domain JHS88_12550 PF01578 Cytochrome C assembly protein JHS88_12555 PF00571 CBS domain JHS88_12555 PF03471 Transporter associated domain JHS88_12555 PF01595 Cyclin M transmembrane N-terminal domain JHS88_12560 PF02664 S-Ribosylhomocysteinase (LuxS) JHS88_12570 PF04262 Glutamate-cysteine ligase JHS88_12575 PF05193 Peptidase M16 inactive domain JHS88_12575 PF00675 Insulinase (Peptidase family M16) JHS88_12580 PF09335 SNARE associated Golgi protein JHS88_12585 PF08240 Alcohol dehydrogenase GroES-like domain JHS88_12585 PF00107 Zinc-binding dehydrogenase JHS88_12590 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit JHS88_12595 PF00364 Biotin-requiring enzyme JHS88_12595 PF00682 HMGL-like JHS88_12595 PF02436 Conserved carboxylase domain JHS88_12600 PF04277 Oxaloacetate decarboxylase, gamma chain JHS88_12655 PF02599 Global regulator protein family JHS88_12660 PF13840 ACT domain JHS88_12660 PF00696 Amino acid kinase family JHS88_12660 PF01842 ACT domain JHS88_12665 PF01411 tRNA synthetases class II (A) JHS88_12665 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JHS88_12665 PF02272 DHHA1 domain JHS88_12670 PF02631 RecX family JHS88_12675 PF00154 recA bacterial DNA recombination protein JHS88_12680 PF02464 Competence-damaged protein JHS88_12685 PF00488 MutS domain V JHS88_12685 PF01624 MutS domain I JHS88_12685 PF05188 MutS domain II JHS88_12685 PF05192 MutS domain III JHS88_12685 PF05190 MutS family domain IV JHS88_12690 PF04539 Sigma-70 region 3 JHS88_12690 PF04545 Sigma-70, region 4 JHS88_12690 PF00140 Sigma-70 factor, region 1.2 JHS88_12690 PF04542 Sigma-70 region 2 JHS88_12695 PF01476 LysM domain JHS88_12695 PF01551 Peptidase family M23 JHS88_12705 PF01975 Survival protein SurE JHS88_12710 PF01142 tRNA pseudouridine synthase D (TruD) JHS88_12715 PF02542 YgbB family JHS88_12720 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase JHS88_12725 PF04977 Septum formation initiator JHS88_12730 PF00113 Enolase, C-terminal TIM barrel domain JHS88_12730 PF03952 Enolase, N-terminal domain JHS88_12735 PF06418 CTP synthase N-terminus JHS88_12735 PF00117 Glutamine amidotransferase class-I JHS88_12740 PF03819 MazG nucleotide pyrophosphohydrolase domain JHS88_12745 PF04607 Region found in RelA / SpoT proteins JHS88_12745 PF02824 TGS domain JHS88_12745 PF13291 ACT domain JHS88_12750 PF01938 TRAM domain JHS88_12750 PF05958 tRNA (Uracil-5-)-methyltransferase JHS88_12755 PF00672 HAMP domain JHS88_12755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_12755 PF00512 His Kinase A (phospho-acceptor) domain JHS88_12755 PF01627 Hpt domain JHS88_12755 PF00072 Response regulator receiver domain JHS88_12755 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JHS88_12760 PF01648 4'-phosphopantetheinyl transferase superfamily JHS88_12765 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ JHS88_12770 PF02565 Recombination protein O C terminal JHS88_12770 PF11967 Recombination protein O N terminal JHS88_12775 PF01926 50S ribosome-binding GTPase JHS88_12775 PF07650 KH domain JHS88_12780 PF14622 Ribonuclease-III-like JHS88_12780 PF00035 Double-stranded RNA binding motif JHS88_12785 PF10502 Signal peptidase, peptidase S26 JHS88_12790 PF00679 Elongation factor G C-terminus JHS88_12790 PF00009 Elongation factor Tu GTP binding domain JHS88_12790 PF03144 Elongation factor Tu domain 2 JHS88_12790 PF06421 GTP-binding protein LepA C-terminus JHS88_12800 PF03888 MucB/RseB N-terminal domain JHS88_12800 PF17188 MucB/RseB C-terminal domain JHS88_12805 PF03873 Anti sigma-E protein RseA, C-terminal domain JHS88_12805 PF03872 Anti sigma-E protein RseA, N-terminal domain JHS88_12810 PF04542 Sigma-70 region 2 JHS88_12810 PF08281 Sigma-70, region 4 JHS88_12815 PF00890 FAD binding domain JHS88_12815 PF02910 Fumarate reductase flavoprotein C-term JHS88_12820 PF03937 Flavinator of succinate dehydrogenase JHS88_12825 PF01571 Aminomethyltransferase folate-binding domain JHS88_12840 PF01494 FAD binding domain JHS88_12845 PF01494 FAD binding domain JHS88_12850 PF03695 Uncharacterised protein family (UPF0149) JHS88_12855 PF05164 Cell division protein ZapA JHS88_12865 PF01812 5-formyltetrahydrofolate cyclo-ligase family JHS88_12870 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) JHS88_12875 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JHS88_12875 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JHS88_12875 PF01842 ACT domain JHS88_12880 PF04402 Protein of unknown function (DUF541) JHS88_12885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_12885 PF03466 LysR substrate binding domain JHS88_12890 PF01810 LysE type translocator JHS88_12895 PF04073 Aminoacyl-tRNA editing domain JHS88_12900 PF05552 Conserved TM helix JHS88_12900 PF00924 Mechanosensitive ion channel JHS88_12905 PF01116 Fructose-bisphosphate aldolase class-II JHS88_12910 PF00162 Phosphoglycerate kinase JHS88_12915 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JHS88_12915 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JHS88_12920 PF07715 TonB-dependent Receptor Plug Domain JHS88_12920 PF00593 TonB dependent receptor JHS88_12925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_12925 PF03466 LysR substrate binding domain JHS88_12930 PF02779 Transketolase, pyrimidine binding domain JHS88_12930 PF02780 Transketolase, C-terminal domain JHS88_12930 PF00456 Transketolase, thiamine diphosphate binding domain JHS88_12935 PF00438 S-adenosylmethionine synthetase, N-terminal domain JHS88_12935 PF02772 S-adenosylmethionine synthetase, central domain JHS88_12935 PF02773 S-adenosylmethionine synthetase, C-terminal domain JHS88_12945 PF10263 SprT-like family JHS88_12945 PF17283 SprT-like zinc ribbon domain JHS88_12950 PF04231 Endonuclease I JHS88_12955 PF04452 RNA methyltransferase JHS88_12960 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain JHS88_12960 PF02951 Prokaryotic glutathione synthetase, N-terminal domain JHS88_12965 PF02622 Uncharacterized ACR, COG1678 JHS88_12970 PF03652 Holliday junction resolvase JHS88_12975 PF00437 Type II/IV secretion system protein JHS88_12980 PF00437 Type II/IV secretion system protein JHS88_12985 PF01168 Alanine racemase, N-terminal domain JHS88_12990 PF14748 Pyrroline-5-carboxylate reductase dimerisation JHS88_12990 PF03807 NADP oxidoreductase coenzyme F420-dependent JHS88_12995 PF02325 YGGT family JHS88_13000 PF02594 Uncharacterised ACR, YggU family COG1872 JHS88_13010 PF01725 Ham1 family JHS88_13015 PF06969 HemN C-terminal domain JHS88_13015 PF04055 Radical SAM superfamily JHS88_13020 PF04960 Glutaminase JHS88_13025 PF02086 D12 class N6 adenine-specific DNA methyltransferase JHS88_13030 PF02390 Putative methyltransferase JHS88_13035 PF14815 NUDIX domain JHS88_13035 PF00633 Helix-hairpin-helix motif JHS88_13035 PF00730 HhH-GPD superfamily base excision DNA repair protein JHS88_13040 PF04362 Bacterial Fe(2+) trafficking JHS88_13045 PF01464 Transglycosylase SLT domain JHS88_13045 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain JHS88_13085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS88_13085 PF00672 HAMP domain JHS88_13085 PF17200 Single Cache domain 2 JHS88_13115 PF00171 Aldehyde dehydrogenase family JHS88_13160 PF00072 Response regulator receiver domain JHS88_13165 PF00356 Bacterial regulatory proteins, lacI family JHS88_13165 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JHS88_13170 PF04794 YdjC-like protein JHS88_13175 PF11975 Family 4 glycosyl hydrolase C-terminal domain JHS88_13175 PF02056 Family 4 glycosyl hydrolase JHS88_13180 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit JHS88_13185 PF02378 Phosphotransferase system, EIIC JHS88_13190 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JHS88_13195 PF01522 Polysaccharide deacetylase JHS88_13205 PF00106 short chain dehydrogenase JHS88_13210 PF10011 Predicted membrane protein (DUF2254) JHS88_13220 PF03739 Lipopolysaccharide export system permease LptF/LptG JHS88_13225 PF03739 Lipopolysaccharide export system permease LptF/LptG JHS88_13230 PF02789 Cytosol aminopeptidase family, N-terminal domain JHS88_13230 PF00883 Cytosol aminopeptidase family, catalytic domain JHS88_13235 PF04364 DNA polymerase III chi subunit, HolC JHS88_13240 PF08264 Anticodon-binding domain of tRNA JHS88_13240 PF00133 tRNA synthetases class I (I, L, M and V) JHS88_13240 PF10458 Valyl tRNA synthetase tRNA binding arm JHS88_13250 PF00583 Acetyltransferase (GNAT) family JHS88_13260 PF06877 Regulator of ribonuclease activity B JHS88_13270 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JHS88_13270 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JHS88_13280 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JHS88_13280 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JHS88_13285 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain JHS88_13285 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain JHS88_13290 PF01042 Endoribonuclease L-PSP JHS88_13295 PF01553 Acyltransferase JHS88_13300 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JHS88_13305 PF01722 BolA-like protein JHS88_13315 PF05494 MlaC protein JHS88_13320 PF02470 MlaD protein JHS88_13325 PF02405 Permease MlaE JHS88_13330 PF00005 ABC transporter JHS88_13335 PF01699 Sodium/calcium exchanger protein JHS88_13340 PF00571 CBS domain JHS88_13340 PF01380 SIS domain JHS88_13350 PF03968 OstA-like protein JHS88_13355 PF00005 ABC transporter JHS88_13355 PF12399 Branched-chain amino acid ATP-binding cassette transporter JHS88_13360 PF00309 Sigma-54 factor, Activator interacting domain (AID) JHS88_13360 PF04963 Sigma-54 factor, core binding domain JHS88_13360 PF04552 Sigma-54, DNA binding domain JHS88_13365 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JHS88_13370 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JHS88_13375 PF03668 P-loop ATPase protein family JHS88_13380 PF00381 PTS HPr component phosphorylation site JHS88_13385 PF00571 CBS domain JHS88_13385 PF01769 Divalent cation transporter JHS88_13385 PF03448 MgtE intracellular N domain JHS88_13390 PF01523 Putative modulator of DNA gyrase JHS88_13395 PF04751 Protein of unknown function (DUF615) JHS88_13400 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JHS88_13400 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JHS88_13405 PF00849 RNA pseudouridylate synthase JHS88_13415 PF00271 Helicase conserved C-terminal domain JHS88_13415 PF12137 RNA polymerase recycling family C-terminal JHS88_13415 PF00176 SNF2 family N-terminal domain JHS88_13415 PF18339 RapA N-terminal Tudor like domain 1 JHS88_13415 PF18337 RapA N-terminal Tudor like domain JHS88_13420 PF02562 PhoH-like protein JHS88_13420 PF13638 PIN domain JHS88_13425 PF01523 Putative modulator of DNA gyrase JHS88_13430 PF00795 Carbon-nitrogen hydrolase JHS88_13435 PF13502 AsmA-like C-terminal region JHS88_13435 PF13116 Protein of unknown function JHS88_13440 PF10150 Ribonuclease E/G family JHS88_13440 PF00575 S1 RNA binding domain JHS88_13445 PF02545 Maf-like protein JHS88_13450 PF04093 rod shape-determining protein MreD JHS88_13455 PF04085 rod shape-determining protein MreC JHS88_13495 PF07963 Prokaryotic N-terminal methylation motif JHS88_13505 PF00482 Type II secretion system (T2SS), protein F JHS88_13510 PF00437 Type II/IV secretion system protein JHS88_13510 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JHS88_13520 PF13401 AAA domain JHS88_13520 PF01471 Putative peptidoglycan binding domain JHS88_13525 PF07660 Secretin and TonB N terminus short domain JHS88_13525 PF00263 Bacterial type II and III secretion system protein JHS88_13525 PF03958 Bacterial type II/III secretion system short domain JHS88_13525 PF11741 AMIN domain JHS88_13545 PF00563 EAL domain JHS88_13545 PF17157 Gammaproteobacterial periplasmic sensor domain JHS88_13545 PF00990 Diguanylate cyclase, GGDEF domain JHS88_13550 PF00436 Single-strand binding protein family JHS88_13555 PF00196 Bacterial regulatory proteins, luxR family JHS88_13560 PF00483 Nucleotidyl transferase JHS88_13565 PF17755 UvrA DNA-binding domain JHS88_13565 PF00005 ABC transporter JHS88_13565 PF17760 UvrA interaction domain JHS88_13575 PF00266 Aminotransferase class-V JHS88_13580 PF00696 Amino acid kinase family JHS88_13580 PF01842 ACT domain JHS88_13585 PF02607 B12 binding domain JHS88_13585 PF02965 Vitamin B12 dependent methionine synthase, activation domain JHS88_13585 PF02310 B12 binding domain JHS88_13585 PF02574 Homocysteine S-methyltransferase JHS88_13585 PF00809 Pterin binding enzyme JHS88_13590 PF00999 Sodium/hydrogen exchanger family JHS88_13600 PF13358 DDE superfamily endonuclease JHS88_13655 PF01507 Phosphoadenosine phosphosulfate reductase family JHS88_13660 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JHS88_13660 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JHS88_13665 PF00258 Flavodoxin JHS88_13665 PF00175 Oxidoreductase NAD-binding domain JHS88_13665 PF00667 FAD binding domain JHS88_13685 PF01207 Dihydrouridine synthase (Dus) JHS88_13690 PF01475 Ferric uptake regulator family JHS88_13700 PF00342 Phosphoglucose isomerase JHS88_13705 PF01894 Uncharacterised protein family UPF0047 JHS88_13715 PF00842 Alanine racemase, C-terminal domain JHS88_13715 PF01168 Alanine racemase, N-terminal domain JHS88_13720 PF00772 DnaB-like helicase N terminal domain JHS88_13720 PF03796 DnaB-like helicase C terminal domain JHS88_13730 PF03948 Ribosomal protein L9, C-terminal domain JHS88_13730 PF01281 Ribosomal protein L9, N-terminal domain JHS88_13735 PF01084 Ribosomal protein S18 JHS88_13740 PF00436 Single-strand binding protein family JHS88_13745 PF01250 Ribosomal protein S6 JHS88_13750 PF00834 Ribulose-phosphate 3 epimerase family JHS88_13755 PF02086 D12 class N6 adenine-specific DNA methyltransferase JHS88_13765 PF01761 3-dehydroquinate synthase JHS88_13770 PF01202 Shikimate kinase JHS88_13775 PF11741 AMIN domain JHS88_13775 PF03958 Bacterial type II/III secretion system short domain JHS88_13775 PF07660 Secretin and TonB N terminus short domain JHS88_13775 PF00263 Bacterial type II and III secretion system protein JHS88_13780 PF04351 Pilus assembly protein, PilP JHS88_13790 PF05137 Fimbrial assembly protein (PilN) JHS88_13800 PF00905 Penicillin binding protein transpeptidase domain JHS88_13800 PF17092 Penicillin-binding protein OB-like domain JHS88_13800 PF00912 Transglycosylase JHS88_13805 PF03466 LysR substrate binding domain JHS88_13805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_13810 PF00462 Glutaredoxin JHS88_13810 PF08534 Redoxin JHS88_13820 PF00583 Acetyltransferase (GNAT) family JHS88_13820 PF14698 Argininosuccinate lyase C-terminal JHS88_13820 PF00206 Lyase JHS88_13825 PF00764 Arginosuccinate synthase JHS88_13830 PF00696 Amino acid kinase family JHS88_13835 PF01118 Semialdehyde dehydrogenase, NAD binding domain JHS88_13835 PF02774 Semialdehyde dehydrogenase, dimerisation domain JHS88_13840 PF07687 Peptidase dimerisation domain JHS88_13840 PF01546 Peptidase family M20/M25/M40 JHS88_13845 PF00311 Phosphoenolpyruvate carboxylase JHS88_13855 PF02219 Methylenetetrahydrofolate reductase JHS88_13860 PF00696 Amino acid kinase family JHS88_13860 PF00742 Homoserine dehydrogenase JHS88_13860 PF03447 Homoserine dehydrogenase, NAD binding domain JHS88_13865 PF01053 Cys/Met metabolism PLP-dependent enzyme JHS88_13870 PF01340 Met Apo-repressor, MetJ JHS88_13875 PF03949 Malic enzyme, NAD binding domain JHS88_13875 PF00390 Malic enzyme, N-terminal domain JHS88_13880 PF00210 Ferritin-like domain JHS88_13885 PF04324 BFD-like [2Fe-2S] binding domain JHS88_13890 PF00009 Elongation factor Tu GTP binding domain JHS88_13890 PF03144 Elongation factor Tu domain 2 JHS88_13890 PF03143 Elongation factor Tu C-terminal domain JHS88_13895 PF03144 Elongation factor Tu domain 2 JHS88_13895 PF00009 Elongation factor Tu GTP binding domain JHS88_13895 PF03764 Elongation factor G, domain IV JHS88_13895 PF00679 Elongation factor G C-terminus JHS88_13895 PF14492 Elongation Factor G, domain II JHS88_13900 PF00177 Ribosomal protein S7p/S5e JHS88_13905 PF00164 Ribosomal protein S12/S23 JHS88_13910 PF04077 DsrH like protein JHS88_13915 PF02635 DsrE/DsrF-like family JHS88_13920 PF02635 DsrE/DsrF-like family JHS88_13925 PF08348 YheO-like PAS domain JHS88_13925 PF13309 HTH domain JHS88_13930 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JHS88_13930 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JHS88_13940 PF04102 SlyX JHS88_13945 PF01112 Asparaginase JHS88_13950 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JHS88_13960 PF00999 Sodium/hydrogen exchanger family JHS88_13960 PF02254 TrkA-N domain JHS88_13965 PF02525 Flavodoxin-like fold JHS88_13970 PF00005 ABC transporter JHS88_13970 PF12848 ABC transporter JHS88_13980 PF00561 alpha/beta hydrolase fold JHS88_13985 PF06794 Uncharacterised protein family (UPF0270) JHS88_13990 PF00485 Phosphoribulokinase / Uridine kinase family JHS88_13995 PF00027 Cyclic nucleotide-binding domain JHS88_13995 PF13545 Crp-like helix-turn-helix domain JHS88_14005 PF00171 Aldehyde dehydrogenase family JHS88_14010 PF04958 Arginine N-succinyltransferase beta subunit JHS88_14015 PF00202 Aminotransferase class-III JHS88_14020 PF00117 Glutamine amidotransferase class-I JHS88_14035 PF00579 tRNA synthetases class I (W and Y) JHS88_14040 PF13419 Haloacid dehalogenase-like hydrolase JHS88_14045 PF00588 SpoU rRNA Methylase family JHS88_14045 PF08032 RNA 2'-O ribose methyltransferase substrate binding JHS88_14050 PF00575 S1 RNA binding domain JHS88_14050 PF00773 RNB domain JHS88_14050 PF08206 Ribonuclease B OB domain JHS88_14050 PF08461 Ribonuclease R winged-helix domain JHS88_14050 PF17876 Cold shock domain JHS88_14055 PF02082 Transcriptional regulator JHS88_14060 PF00042 Globin JHS88_14060 PF00175 Oxidoreductase NAD-binding domain JHS88_14060 PF00970 Oxidoreductase FAD-binding domain JHS88_14065 PF08238 Sel1 repeat JHS88_14070 PF00709 Adenylosuccinate synthetase JHS88_14075 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) JHS88_14080 PF01145 SPFH domain / Band 7 family JHS88_14085 PF01145 SPFH domain / Band 7 family JHS88_14085 PF12221 Bacterial membrane protein N terminal JHS88_14090 PF01926 50S ribosome-binding GTPase JHS88_14090 PF13167 GTP-binding GTPase N-terminal JHS88_14090 PF16360 GTP-binding GTPase Middle Region JHS88_14095 PF17209 Hfq protein JHS88_14105 PF01119 DNA mismatch repair protein, C-terminal domain JHS88_14105 PF08676 MutL C terminal dimerisation domain JHS88_14110 PF01520 N-acetylmuramoyl-L-alanine amidase JHS88_14115 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE JHS88_14120 PF08331 Domain of unknown function (DUF1730) JHS88_14190 PF00929 Exonuclease JHS88_14195 PF03193 RsgA GTPase JHS88_14200 PF02666 Phosphatidylserine decarboxylase JHS88_14205 PF00939 Sodium:sulfate symporter transmembrane region JHS88_14210 PF00239 Resolvase, N terminal domain JHS88_14210 PF02796 Helix-turn-helix domain of resolvase JHS88_14255 PF06415 BPG-independent PGAM N-terminus (iPGM_N) JHS88_14255 PF01676 Metalloenzyme superfamily JHS88_14260 PF00581 Rhodanese-like domain JHS88_14265 PF02556 Preprotein translocase subunit SecB JHS88_14270 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JHS88_14270 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JHS88_14275 PF00132 Bacterial transferase hexapeptide (six repeats) JHS88_14275 PF06426 Serine acetyltransferase, N-terminal JHS88_14280 PF01551 Peptidase family M23 JHS88_14290 PF08360 QacR-like protein, C-terminal region JHS88_14290 PF00440 Bacterial regulatory proteins, tetR family JHS88_14300 PF00152 tRNA synthetases class II (D, K and N) JHS88_14305 PF00890 FAD binding domain JHS88_14305 PF02910 Fumarate reductase flavoprotein C-term JHS88_14310 PF13085 2Fe-2S iron-sulfur cluster binding domain JHS88_14310 PF13183 4Fe-4S dicluster domain JHS88_14315 PF02300 Fumarate reductase subunit C JHS88_14320 PF02313 Fumarate reductase subunit D JHS88_14330 PF08207 Elongation factor P (EF-P) KOW-like domain JHS88_14330 PF01132 Elongation factor P (EF-P) OB domain JHS88_14330 PF09285 Elongation factor P, C-terminal JHS88_14335 PF04055 Radical SAM superfamily JHS88_14340 PF00842 Alanine racemase, C-terminal domain JHS88_14340 PF01168 Alanine racemase, N-terminal domain JHS88_14345 PF02308 MgtC family JHS88_14355 PF00118 TCP-1/cpn60 chaperonin family JHS88_14360 PF00166 Chaperonin 10 Kd subunit JHS88_14365 PF01554 MatE JHS88_14370 PF00365 Phosphofructokinase JHS88_14375 PF16916 Dimerisation domain of Zinc Transporter JHS88_14375 PF01545 Cation efflux family JHS88_14380 PF07813 LTXXQ motif family protein JHS88_14385 PF00486 Transcriptional regulatory protein, C terminal JHS88_14385 PF00072 Response regulator receiver domain JHS88_14390 PF16527 Two-component sensor protein CpxA, periplasmic domain JHS88_14390 PF00672 HAMP domain JHS88_14390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_14390 PF00512 His Kinase A (phospho-acceptor) domain JHS88_14395 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JHS88_14395 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JHS88_14400 PF00588 SpoU rRNA Methylase family JHS88_14405 PF04186 FxsA cytoplasmic membrane protein JHS88_14410 PF00206 Lyase JHS88_14410 PF10415 Fumarase C C-terminus JHS88_14415 PF03605 Anaerobic c4-dicarboxylate membrane transporter JHS88_14420 PF02683 Cytochrome C biogenesis protein transmembrane region JHS88_14420 PF11412 Disulphide bond corrector protein DsbC JHS88_14425 PF00072 Response regulator receiver domain JHS88_14425 PF00196 Bacterial regulatory proteins, luxR family JHS88_14430 PF00999 Sodium/hydrogen exchanger family JHS88_14430 PF03471 Transporter associated domain JHS88_14430 PF02080 TrkA-C domain JHS88_14440 PF00474 Sodium:solute symporter family JHS88_14455 PF00206 Lyase JHS88_14455 PF10415 Fumarase C C-terminus JHS88_14460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_14460 PF00512 His Kinase A (phospho-acceptor) domain JHS88_14460 PF09308 LuxQ, periplasmic JHS88_14460 PF00072 Response regulator receiver domain JHS88_14465 PF12832 MFS_1 like family JHS88_14480 PF00501 AMP-binding enzyme JHS88_14480 PF16177 Acetyl-coenzyme A synthetase N-terminus JHS88_14480 PF13193 AMP-binding enzyme C-terminal domain JHS88_14485 PF01220 Dehydroquinase class II JHS88_14490 PF00364 Biotin-requiring enzyme JHS88_14495 PF02785 Biotin carboxylase C-terminal domain JHS88_14495 PF00289 Biotin carboxylase, N-terminal domain JHS88_14495 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JHS88_14505 PF01207 Dihydrouridine synthase (Dus) JHS88_14510 PF02954 Bacterial regulatory protein, Fis family JHS88_14515 PF07690 Major Facilitator Superfamily JHS88_14520 PF12848 ABC transporter JHS88_14520 PF00005 ABC transporter JHS88_14525 PF00990 Diguanylate cyclase, GGDEF domain JHS88_14525 PF05230 MASE2 domain JHS88_14595 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain JHS88_14595 PF01276 Orn/Lys/Arg decarboxylase, major domain JHS88_14595 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain JHS88_14600 PF13520 Amino acid permease JHS88_14605 PF18500 CadC C-terminal domain 1 JHS88_14605 PF00486 Transcriptional regulatory protein, C terminal JHS88_14610 PF13411 MerR HTH family regulatory protein JHS88_14615 PF02142 MGS-like domain JHS88_14615 PF01808 AICARFT/IMPCHase bienzyme JHS88_14620 PF02844 Phosphoribosylglycinamide synthetase, N domain JHS88_14620 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain JHS88_14620 PF02843 Phosphoribosylglycinamide synthetase, C domain JHS88_14630 PF00216 Bacterial DNA-binding protein JHS88_14635 PF00571 CBS domain JHS88_14635 PF01595 Cyclin M transmembrane N-terminal domain JHS88_14640 PF04222 Protein of unknown function (DUF416) JHS88_14645 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JHS88_14650 PF03167 Uracil DNA glycosylase superfamily JHS88_14655 PF01208 Uroporphyrinogen decarboxylase (URO-D) JHS88_14670 PF00293 NUDIX domain JHS88_14670 PF09297 NADH pyrophosphatase zinc ribbon domain JHS88_14675 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ JHS88_14680 PF04997 RNA polymerase Rpb1, domain 1 JHS88_14680 PF00623 RNA polymerase Rpb1, domain 2 JHS88_14680 PF04983 RNA polymerase Rpb1, domain 3 JHS88_14680 PF05000 RNA polymerase Rpb1, domain 4 JHS88_14680 PF04998 RNA polymerase Rpb1, domain 5 JHS88_14685 PF00562 RNA polymerase Rpb2, domain 6 JHS88_14685 PF10385 RNA polymerase beta subunit external 1 domain JHS88_14685 PF04560 RNA polymerase Rpb2, domain 7 JHS88_14685 PF04561 RNA polymerase Rpb2, domain 2 JHS88_14685 PF04563 RNA polymerase beta subunit JHS88_14685 PF04565 RNA polymerase Rpb2, domain 3 JHS88_14690 PF00542 Ribosomal protein L7/L12 C-terminal domain JHS88_14690 PF16320 Ribosomal protein L7/L12 dimerisation domain JHS88_14695 PF00466 Ribosomal protein L10 JHS88_14700 PF00687 Ribosomal protein L1p/L10e family JHS88_14705 PF00298 Ribosomal protein L11, RNA binding domain JHS88_14705 PF03946 Ribosomal protein L11, N-terminal domain JHS88_14710 PF00467 KOW motif JHS88_14710 PF02357 Transcription termination factor nusG JHS88_14715 PF00584 SecE/Sec61-gamma subunits of protein translocation complex JHS88_14720 PF03143 Elongation factor Tu C-terminal domain JHS88_14720 PF03144 Elongation factor Tu domain 2 JHS88_14720 PF00009 Elongation factor Tu GTP binding domain JHS88_14745 PF00485 Phosphoribulokinase / Uridine kinase family JHS88_14750 PF08279 HTH domain JHS88_14750 PF02237 Biotin protein ligase C terminal domain JHS88_14750 PF03099 Biotin/lipoate A/B protein ligase family JHS88_14755 PF01565 FAD binding domain JHS88_14755 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JHS88_14765 PF13091 PLD-like domain JHS88_14820 PF01177 Asp/Glu/Hydantoin racemase JHS88_14830 PF00593 TonB dependent receptor JHS88_14830 PF07715 TonB-dependent Receptor Plug Domain JHS88_14835 PF05958 tRNA (Uracil-5-)-methyltransferase JHS88_14845 PF00440 Bacterial regulatory proteins, tetR family JHS88_14850 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JHS88_14850 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS88_14855 PF01554 MatE JHS88_14860 PF04072 Leucine carboxyl methyltransferase JHS88_14865 PF00717 Peptidase S24-like JHS88_14865 PF01726 LexA DNA binding domain JHS88_14870 PF01553 Acyltransferase JHS88_14875 PF01040 UbiA prenyltransferase family JHS88_14880 PF04345 Chorismate lyase JHS88_14885 PF03748 Flagellar basal body-associated protein FliL JHS88_14890 PF01694 Rhomboid family JHS88_14890 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease JHS88_14895 PF00581 Rhodanese-like domain JHS88_14900 PF00140 Sigma-70 factor, region 1.2 JHS88_14900 PF04542 Sigma-70 region 2 JHS88_14900 PF04545 Sigma-70, region 4 JHS88_14905 PF18075 FtsX extracellular domain JHS88_14910 PF00005 ABC transporter JHS88_14915 PF00448 SRP54-type protein, GTPase domain JHS88_14915 PF02881 SRP54-type protein, helical bundle domain JHS88_14930 PF01914 MarC family integral membrane protein JHS88_14975 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JHS88_14975 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JHS88_14980 PF01022 Bacterial regulatory protein, arsR family JHS88_14985 PF08668 HDOD domain JHS88_14985 PF00563 EAL domain JHS88_14990 PF01810 LysE type translocator JHS88_14995 PF12146 Serine aminopeptidase, S33 JHS88_15015 PF03942 DTW domain JHS88_15020 PF10442 FIST C domain JHS88_15020 PF00990 Diguanylate cyclase, GGDEF domain JHS88_15020 PF00563 EAL domain JHS88_15020 PF08495 FIST N domain JHS88_15025 PF13419 Haloacid dehalogenase-like hydrolase JHS88_15030 PF02899 Phage integrase, N-terminal SAM-like domain JHS88_15030 PF00589 Phage integrase family JHS88_15040 PF01678 Diaminopimelate epimerase JHS88_15045 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JHS88_15045 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JHS88_15055 PF01491 Frataxin-like domain JHS88_15060 PF12633 Adenylate cyclase NT domain JHS88_15060 PF01295 Adenylate cyclase, class-I JHS88_15065 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain JHS88_15065 PF03900 Porphobilinogen deaminase, C-terminal domain JHS88_15070 PF02602 Uroporphyrinogen-III synthase HemD JHS88_15075 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase JHS88_15080 PF07219 HemY protein N-terminus JHS88_15120 PF00175 Oxidoreductase NAD-binding domain JHS88_15125 PF00111 2Fe-2S iron-sulfur cluster binding domain JHS88_15130 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase JHS88_15140 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JHS88_15140 PF07498 Rho termination factor, N-terminal domain JHS88_15140 PF07497 Rho termination factor, RNA-binding domain JHS88_15145 PF00085 Thioredoxin JHS88_15150 PF00270 DEAD/DEAH box helicase JHS88_15150 PF00271 Helicase conserved C-terminal domain JHS88_15155 PF02541 Ppx/GppA phosphatase family JHS88_15160 PF02592 Putative vitamin uptake transporter JHS88_15170 PF09382 RQC domain JHS88_15170 PF16124 RecQ zinc-binding JHS88_15170 PF00271 Helicase conserved C-terminal domain JHS88_15170 PF00270 DEAD/DEAH box helicase JHS88_15170 PF00570 HRDC domain JHS88_15205 PF18766 SWI2/SNF2 ATPase JHS88_15205 PF12008 Type I restriction and modification enzyme - subunit R C terminal JHS88_15205 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) JHS88_15215 PF01420 Type I restriction modification DNA specificity domain JHS88_15220 PF12161 HsdM N-terminal domain JHS88_15220 PF02384 N-6 DNA Methylase JHS88_15235 PF00892 EamA-like transporter family JHS88_15270 PF13737 Transposase DDE domain JHS88_15295 PF01810 LysE type translocator JHS88_15305 PF00580 UvrD/REP helicase N-terminal domain JHS88_15305 PF13361 UvrD-like helicase C-terminal domain JHS88_15315 PF05114 Protein of unknown function (DUF692) JHS88_15335 PF07690 Major Facilitator Superfamily JHS88_15340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_15340 PF03466 LysR substrate binding domain JHS88_15345 PF01321 Creatinase/Prolidase N-terminal domain JHS88_15345 PF00557 Metallopeptidase family M24 JHS88_15345 PF00557 Metallopeptidase family M24 JHS88_15345 PF01321 Creatinase/Prolidase N-terminal domain JHS88_15350 PF06968 Biotin and Thiamin Synthesis associated domain JHS88_15350 PF04055 Radical SAM superfamily JHS88_15355 PF05690 Thiazole biosynthesis protein ThiG JHS88_15360 PF02597 ThiS family JHS88_15365 PF00899 ThiF family JHS88_15370 PF02581 Thiamine monophosphate synthase JHS88_15375 PF01964 Radical SAM ThiC family JHS88_15375 PF13667 ThiC-associated domain JHS88_15380 PF02537 CrcB-like protein, Camphor Resistance (CrcB) JHS88_15435 PF00132 Bacterial transferase hexapeptide (six repeats) JHS88_15440 PF07369 Protein of unknown function (DUF1488) JHS88_15445 PF18317 Shikimate 5'-dehydrogenase C-terminal domain JHS88_15445 PF01488 Shikimate / quinate 5-dehydrogenase JHS88_15445 PF08501 Shikimate dehydrogenase substrate binding domain JHS88_15450 PF01218 Coproporphyrinogen III oxidase JHS88_15455 PF01300 Telomere recombination JHS88_15460 PF00731 AIR carboxylase JHS88_15465 PF02222 ATP-grasp domain JHS88_15465 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain JHS88_15470 PF01396 Topoisomerase DNA binding C4 zinc finger JHS88_15475 PF04361 Protein of unknown function (DUF494) JHS88_15480 PF17782 DprA winged helix domain JHS88_15480 PF02481 DNA recombination-mediator protein A JHS88_15490 PF01327 Polypeptide deformylase JHS88_15495 PF02911 Formyl transferase, C-terminal domain JHS88_15495 PF00551 Formyl transferase JHS88_15500 PF01189 16S rRNA methyltransferase RsmB/F JHS88_15500 PF01029 NusB family JHS88_15505 PF02080 TrkA-C domain JHS88_15505 PF02254 TrkA-N domain JHS88_15510 PF02386 Cation transport protein JHS88_15520 PF03006 Haemolysin-III related JHS88_15525 PF07070 SpoOM protein JHS88_15535 PF06288 Protein of unknown function (DUF1040) JHS88_15540 PF12801 4Fe-4S binding domain JHS88_15540 PF13746 4Fe-4S dicluster domain JHS88_15540 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase JHS88_15545 PF01636 Phosphotransferase enzyme family JHS88_15550 PF01323 DSBA-like thioredoxin domain JHS88_15555 PF01553 Acyltransferase JHS88_15565 PF01078 Magnesium chelatase, subunit ChlI JHS88_15565 PF13335 Magnesium chelatase, subunit ChlI C-terminal JHS88_15570 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JHS88_15570 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JHS88_15570 PF00205 Thiamine pyrophosphate enzyme, central domain JHS88_15580 PF01063 Amino-transferase class IV JHS88_15585 PF00920 Dehydratase family JHS88_15590 PF00291 Pyridoxal-phosphate dependent enzyme JHS88_15590 PF00585 C-terminal regulatory domain of Threonine dehydratase JHS88_15595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_15595 PF03466 LysR substrate binding domain JHS88_15600 PF07690 Major Facilitator Superfamily JHS88_15610 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_15615 PF12804 MobA-like NTP transferase domain JHS88_15615 PF00132 Bacterial transferase hexapeptide (six repeats) JHS88_15620 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain JHS88_15620 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain JHS88_15625 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JHS88_15625 PF02874 ATP synthase alpha/beta family, beta-barrel domain JHS88_15630 PF00231 ATP synthase JHS88_15635 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JHS88_15635 PF00306 ATP synthase alpha/beta chain, C terminal domain JHS88_15635 PF02874 ATP synthase alpha/beta family, beta-barrel domain JHS88_15640 PF00213 ATP synthase delta (OSCP) subunit JHS88_15645 PF00430 ATP synthase B/B' CF(0) JHS88_15650 PF00137 ATP synthase subunit C JHS88_15655 PF00119 ATP synthase A chain JHS88_15660 PF03899 ATP synthase I chain JHS88_15665 PF17762 HTH domain found in ParB protein JHS88_15665 PF02195 ParB-like nuclease domain JHS88_15670 PF13614 AAA domain JHS88_15675 PF02527 rRNA small subunit methyltransferase G JHS88_15680 PF01134 Glucose inhibited division protein A JHS88_15680 PF13932 GidA associated domain JHS88_15685 PF00258 Flavodoxin JHS88_15690 PF12631 MnmE helical domain JHS88_15690 PF10396 GTP-binding protein TrmE N-terminus JHS88_15690 PF01926 50S ribosome-binding GTPase JHS88_15695 PF02096 60Kd inner membrane protein JHS88_15695 PF14849 YidC periplasmic domain JHS88_15700 PF01809 Putative membrane protein insertion efficiency factor JHS88_15705 PF00825 Ribonuclease P JHS88_15710 PF00468 Ribosomal protein L34 JHS88_15715 PF00005 ABC transporter JHS88_15720 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_15725 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS88_15755 PF01070 FMN-dependent dehydrogenase JHS88_15765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_15765 PF03466 LysR substrate binding domain JHS88_15775 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS88_15775 PF00005 ABC transporter JHS88_15785 PF05362 Lon protease (S16) C-terminal proteolytic domain JHS88_15785 PF13654 AAA domain JHS88_15790 PF00672 HAMP domain JHS88_15790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS88_15795 PF12945 Flagellar protein YcgR JHS88_15795 PF07238 PilZ domain JHS88_15810 PF00583 Acetyltransferase (GNAT) family JHS88_15815 PF12800 4Fe-4S binding domain JHS88_15815 PF12838 4Fe-4S dicluster domain JHS88_15820 PF12801 4Fe-4S binding domain JHS88_15820 PF13237 4Fe-4S dicluster domain JHS88_15835 PF00005 ABC transporter JHS88_15835 PF12558 ATP-binding cassette cobalt transporter JHS88_15840 PF07155 ECF-type riboflavin transporter, S component JHS88_15845 PF00529 HlyD membrane-fusion protein of T1SS JHS88_15845 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS88_15850 PF11742 Protein of unknown function (DUF3302) JHS88_15855 PF00990 Diguanylate cyclase, GGDEF domain JHS88_15870 PF01048 Phosphorylase superfamily JHS88_15875 PF08349 Protein of unknown function (DUF1722) JHS88_15880 PF13411 MerR HTH family regulatory protein JHS88_15885 PF00875 DNA photolyase JHS88_15885 PF03441 FAD binding domain of DNA photolyase JHS88_15890 PF01476 LysM domain JHS88_15890 PF03734 L,D-transpeptidase catalytic domain JHS88_15890 PF17969 L,D-transpeptidase C-terminal domain JHS88_15900 PF00270 DEAD/DEAH box helicase JHS88_15900 PF00271 Helicase conserved C-terminal domain JHS88_15905 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JHS88_15905 PF00326 Prolyl oligopeptidase family JHS88_15910 PF07715 TonB-dependent Receptor Plug Domain JHS88_15910 PF00593 TonB dependent receptor JHS88_15930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS88_15930 PF00672 HAMP domain JHS88_15935 PF12849 PBP superfamily domain JHS88_15940 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_15945 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_15950 PF00005 ABC transporter JHS88_15965 PF13519 von Willebrand factor type A domain JHS88_15970 PF13519 von Willebrand factor type A domain JHS88_15980 PF01882 Protein of unknown function DUF58 JHS88_15985 PF17863 AAA lid domain JHS88_15985 PF07726 ATPase family associated with various cellular activities (AAA) JHS88_15990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS88_15990 PF02743 Cache domain JHS88_15990 PF00672 HAMP domain JHS88_16000 PF00196 Bacterial regulatory proteins, luxR family JHS88_16005 PF00196 Bacterial regulatory proteins, luxR family JHS88_16015 PF00664 ABC transporter transmembrane region JHS88_16015 PF00005 ABC transporter JHS88_16020 PF00529 HlyD membrane-fusion protein of T1SS JHS88_16035 PF13693 Winged helix-turn-helix DNA-binding JHS88_16090 PF02810 SEC-C motif JHS88_16250 PF01555 DNA methylase JHS88_16280 PF01389 OmpA-like transmembrane domain JHS88_16280 PF00691 OmpA family JHS88_16290 PF01032 FecCD transport family JHS88_16295 PF01497 Periplasmic binding protein JHS88_16300 PF00005 ABC transporter JHS88_16305 PF07715 TonB-dependent Receptor Plug Domain JHS88_16305 PF00593 TonB dependent receptor JHS88_16310 PF00664 ABC transporter transmembrane region JHS88_16310 PF00005 ABC transporter JHS88_16315 PF00512 His Kinase A (phospho-acceptor) domain JHS88_16315 PF13493 Domain of unknown function (DUF4118) JHS88_16315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_16315 PF02702 Osmosensitive K+ channel His kinase sensor domain JHS88_16315 PF13493 Domain of unknown function (DUF4118) JHS88_16315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_16315 PF00512 His Kinase A (phospho-acceptor) domain JHS88_16315 PF02702 Osmosensitive K+ channel His kinase sensor domain JHS88_16320 PF00072 Response regulator receiver domain JHS88_16320 PF00486 Transcriptional regulatory protein, C terminal JHS88_16325 PF02080 TrkA-C domain JHS88_16325 PF02254 TrkA-N domain JHS88_16330 PF02386 Cation transport protein JHS88_16335 PF03707 Bacterial signalling protein N terminal repeat JHS88_16335 PF00990 Diguanylate cyclase, GGDEF domain JHS88_16335 PF00563 EAL domain JHS88_16340 PF00127 Copper binding proteins, plastocyanin/azurin family JHS88_16345 PF13419 Haloacid dehalogenase-like hydrolase JHS88_16355 PF01238 Phosphomannose isomerase type I JHS88_16360 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JHS88_16360 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JHS88_16365 PF12833 Helix-turn-helix domain JHS88_16375 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JHS88_16385 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JHS88_16385 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JHS88_16390 PF06628 Catalase-related immune-responsive JHS88_16390 PF00199 Catalase JHS88_16395 PF13417 Glutathione S-transferase, N-terminal domain JHS88_16400 PF16884 N-terminal domain of oxidoreductase JHS88_16400 PF00107 Zinc-binding dehydrogenase JHS88_16405 PF00440 Bacterial regulatory proteins, tetR family JHS88_16405 PF16925 Tetracyclin repressor-like, C-terminal domain JHS88_16410 PF04266 ASCH domain JHS88_16440 PF13439 Glycosyltransferase Family 4 JHS88_16440 PF00534 Glycosyl transferases group 1 JHS88_16450 PF13614 AAA domain JHS88_16450 PF13807 G-rich domain on putative tyrosine kinase JHS88_16450 PF02706 Chain length determinant protein JHS88_16465 PF02397 Bacterial sugar transferase JHS88_16470 PF00005 ABC transporter JHS88_16470 PF08402 TOBE domain JHS88_16475 PF01547 Bacterial extracellular solute-binding protein JHS88_16480 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_16480 PF14785 Maltose transport system permease protein MalF P2 domain JHS88_16485 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_16540 PF01872 RibD C-terminal domain JHS88_16545 PF00440 Bacterial regulatory proteins, tetR family JHS88_16545 PF02909 Tetracyclin repressor-like, C-terminal domain JHS88_16550 PF02798 Glutathione S-transferase, N-terminal domain JHS88_16555 PF00768 D-alanyl-D-alanine carboxypeptidase JHS88_16555 PF07943 Penicillin-binding protein 5, C-terminal domain JHS88_16570 PF00462 Glutaredoxin JHS88_16570 PF08534 Redoxin JHS88_16575 PF00962 Adenosine/AMP deaminase JHS88_16590 PF00313 'Cold-shock' DNA-binding domain JHS88_16595 PF02678 Pirin JHS88_16595 PF05726 Pirin C-terminal cupin domain JHS88_16600 PF01734 Patatin-like phospholipase JHS88_16610 PF01047 MarR family JHS88_16625 PF07690 Major Facilitator Superfamily JHS88_16635 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JHS88_16640 PF08019 Phosphoethanolamine transferase EptA/EptB JHS88_16640 PF00884 Sulfatase JHS88_16645 PF01219 Prokaryotic diacylglycerol kinase JHS88_16655 PF00672 HAMP domain JHS88_16655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_16655 PF00512 His Kinase A (phospho-acceptor) domain JHS88_16660 PF00072 Response regulator receiver domain JHS88_16660 PF00486 Transcriptional regulatory protein, C terminal JHS88_16665 PF00106 short chain dehydrogenase JHS88_16680 PF01323 DSBA-like thioredoxin domain JHS88_16695 PF00255 Glutathione peroxidase JHS88_16700 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JHS88_16710 PF07690 Major Facilitator Superfamily JHS88_16720 PF01966 HD domain JHS88_16730 PF07969 Amidohydrolase family JHS88_16735 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin JHS88_16740 PF03448 MgtE intracellular N domain JHS88_16740 PF01769 Divalent cation transporter JHS88_16740 PF00571 CBS domain JHS88_16745 PF03109 ABC1 family JHS88_16750 PF00529 HlyD membrane-fusion protein of T1SS JHS88_16750 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS88_16760 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JHS88_16760 PF12833 Helix-turn-helix domain JHS88_16775 PF00486 Transcriptional regulatory protein, C terminal JHS88_16775 PF00072 Response regulator receiver domain JHS88_16780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_16780 PF00512 His Kinase A (phospho-acceptor) domain JHS88_16780 PF00672 HAMP domain JHS88_16780 PF16527 Two-component sensor protein CpxA, periplasmic domain JHS88_16790 PF00155 Aminotransferase class I and II JHS88_16790 PF00392 Bacterial regulatory proteins, gntR family JHS88_16795 PF13520 Amino acid permease JHS88_16800 PF13404 AsnC-type helix-turn-helix domain JHS88_16800 PF01037 Lrp/AsnC ligand binding domain JHS88_16805 PF03466 LysR substrate binding domain JHS88_16805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_16825 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JHS88_16825 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JHS88_16830 PF00672 HAMP domain JHS88_16830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_16830 PF00512 His Kinase A (phospho-acceptor) domain JHS88_16830 PF01627 Hpt domain JHS88_16830 PF00072 Response regulator receiver domain JHS88_16830 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JHS88_16835 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JHS88_16840 PF01554 MatE JHS88_16845 PF04363 Protein of unknown function (DUF496) JHS88_16855 PF04337 Protein of unknown function, DUF480 JHS88_16860 PF01541 GIY-YIG catalytic domain JHS88_16865 PF13407 Periplasmic binding protein domain JHS88_16870 PF00072 Response regulator receiver domain JHS88_16870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_16870 PF00512 His Kinase A (phospho-acceptor) domain JHS88_16870 PF09308 LuxQ, periplasmic JHS88_16880 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS88_16880 PF00529 HlyD membrane-fusion protein of T1SS JHS88_16900 PF01037 Lrp/AsnC ligand binding domain JHS88_16925 PF07549 SecD/SecF GG Motif JHS88_16925 PF13721 SecD export protein N-terminal TM region JHS88_16925 PF02355 Protein export membrane protein JHS88_16930 PF07549 SecD/SecF GG Motif JHS88_16930 PF02355 Protein export membrane protein JHS88_16945 PF00106 short chain dehydrogenase JHS88_16950 PF00108 Thiolase, N-terminal domain JHS88_16950 PF02803 Thiolase, C-terminal domain JHS88_16960 PF00561 alpha/beta hydrolase fold JHS88_16960 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus JHS88_16970 PF03264 NapC/NirT cytochrome c family, N-terminal region JHS88_16975 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) JHS88_16980 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JHS88_16980 PF00384 Molybdopterin oxidoreductase JHS88_16980 PF01568 Molydopterin dinucleotide binding domain JHS88_16990 PF13187 4Fe-4S dicluster domain JHS88_16990 PF12838 4Fe-4S dicluster domain JHS88_16995 PF00672 HAMP domain JHS88_16995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_16995 PF07730 Histidine kinase JHS88_16995 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term JHS88_17000 PF00196 Bacterial regulatory proteins, luxR family JHS88_17000 PF00072 Response regulator receiver domain JHS88_17015 PF01546 Peptidase family M20/M25/M40 JHS88_17015 PF07687 Peptidase dimerisation domain JHS88_17020 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JHS88_17025 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS88_17030 PF00873 AcrB/AcrD/AcrF family JHS88_17035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS88_17035 PF00672 HAMP domain JHS88_17035 PF12729 Four helix bundle sensory module for signal transduction JHS88_17040 PF00472 RF-1 domain JHS88_17045 PF13419 Haloacid dehalogenase-like hydrolase JHS88_17050 PF00691 OmpA family JHS88_17050 PF01389 OmpA-like transmembrane domain JHS88_17055 PF00793 DAHP synthetase I family JHS88_17060 PF07690 Major Facilitator Superfamily JHS88_17065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS88_17065 PF08447 PAS fold JHS88_17070 PF02780 Transketolase, C-terminal domain JHS88_17070 PF02779 Transketolase, pyrimidine binding domain JHS88_17070 PF00456 Transketolase, thiamine diphosphate binding domain JHS88_17075 PF00923 Transaldolase/Fructose-6-phosphate aldolase JHS88_17085 PF08329 Chitinase A, N-terminal domain JHS88_17085 PF00704 Glycosyl hydrolases family 18 JHS88_17090 PF00563 EAL domain JHS88_17090 PF00990 Diguanylate cyclase, GGDEF domain JHS88_17090 PF03707 Bacterial signalling protein N terminal repeat JHS88_17095 PF00581 Rhodanese-like domain JHS88_17110 PF00899 ThiF family JHS88_17115 PF00994 Probable molybdopterin binding domain JHS88_17115 PF03454 MoeA C-terminal region (domain IV) JHS88_17115 PF03453 MoeA N-terminal region (domain I and II) JHS88_17120 PF01227 GTP cyclohydrolase I JHS88_17125 PF01566 Natural resistance-associated macrophage protein JHS88_17135 PF00654 Voltage gated chloride channel JHS88_17150 PF00248 Aldo/keto reductase family JHS88_17155 PF00072 Response regulator receiver domain JHS88_17165 PF01256 Carbohydrate kinase JHS88_17165 PF03853 YjeF-related protein N-terminus JHS88_17170 PF00478 IMP dehydrogenase / GMP reductase domain JHS88_17175 PF13193 AMP-binding enzyme C-terminal domain JHS88_17175 PF00501 AMP-binding enzyme JHS88_17180 PF01012 Electron transfer flavoprotein domain JHS88_17180 PF00766 Electron transfer flavoprotein FAD-binding domain JHS88_17185 PF01012 Electron transfer flavoprotein domain JHS88_17195 PF12399 Branched-chain amino acid ATP-binding cassette transporter JHS88_17195 PF00005 ABC transporter JHS88_17220 PF00005 ABC transporter JHS88_17225 PF00501 AMP-binding enzyme JHS88_17225 PF14535 AMP-binding enzyme C-terminal domain JHS88_17230 PF05724 Thiopurine S-methyltransferase (TPMT) JHS88_17235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_17235 PF03466 LysR substrate binding domain JHS88_17240 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II JHS88_17240 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase JHS88_17240 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg JHS88_17245 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JHS88_17250 PF00034 Cytochrome c JHS88_17260 PF13411 MerR HTH family regulatory protein JHS88_17265 PF02627 Carboxymuconolactone decarboxylase family JHS88_17270 PF02567 Phenazine biosynthesis-like protein JHS88_17280 PF02322 Cytochrome bd terminal oxidase subunit II JHS88_17285 PF01654 Cytochrome bd terminal oxidase subunit I JHS88_17290 PF00155 Aminotransferase class I and II JHS88_17290 PF00392 Bacterial regulatory proteins, gntR family JHS88_17295 PF12464 Maltose acetyltransferase JHS88_17295 PF14602 Hexapeptide repeat of succinyl-transferase JHS88_17300 PF00924 Mechanosensitive ion channel JHS88_17300 PF12795 Mechanosensitive ion channel porin domain JHS88_17300 PF12794 Mechanosensitive ion channel inner membrane domain 1 JHS88_17315 PF00672 HAMP domain JHS88_17315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_17315 PF00512 His Kinase A (phospho-acceptor) domain JHS88_17315 PF01627 Hpt domain JHS88_17315 PF00072 Response regulator receiver domain JHS88_17315 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JHS88_17320 PF00682 HMGL-like JHS88_17325 PF18140 Propionyl-coenzyme A carboxylase BT domain JHS88_17325 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JHS88_17325 PF00364 Biotin-requiring enzyme JHS88_17325 PF00289 Biotin carboxylase, N-terminal domain JHS88_17325 PF02785 Biotin carboxylase C-terminal domain JHS88_17330 PF00378 Enoyl-CoA hydratase/isomerase JHS88_17335 PF01039 Carboxyl transferase domain JHS88_17340 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JHS88_17340 PF02770 Acyl-CoA dehydrogenase, middle domain JHS88_17340 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JHS88_17345 PF00376 MerR family regulatory protein JHS88_17345 PF09278 MerR, DNA binding JHS88_17350 PF00108 Thiolase, N-terminal domain JHS88_17350 PF02803 Thiolase, C-terminal domain JHS88_17355 PF00171 Aldehyde dehydrogenase family JHS88_17360 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JHS88_17360 PF02770 Acyl-CoA dehydrogenase, middle domain JHS88_17360 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JHS88_17365 PF00378 Enoyl-CoA hydratase/isomerase JHS88_17375 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JHS88_17375 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JHS88_17385 PF17151 Periplasmic sensor domain JHS88_17385 PF00990 Diguanylate cyclase, GGDEF domain JHS88_17390 PF00440 Bacterial regulatory proteins, tetR family JHS88_17390 PF13977 BetI-type transcriptional repressor, C-terminal JHS88_17395 PF00171 Aldehyde dehydrogenase family JHS88_17400 PF05199 GMC oxidoreductase JHS88_17400 PF00732 GMC oxidoreductase JHS88_17405 PF04069 Substrate binding domain of ABC-type glycine betaine transport system JHS88_17410 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_17415 PF00005 ABC transporter JHS88_17415 PF00571 CBS domain JHS88_17420 PF00881 Nitroreductase family JHS88_17430 PF16200 C-terminal region of band_7 JHS88_17430 PF01145 SPFH domain / Band 7 family JHS88_17440 PF13188 PAS domain JHS88_17440 PF00563 EAL domain JHS88_17440 PF03707 Bacterial signalling protein N terminal repeat JHS88_17440 PF00990 Diguanylate cyclase, GGDEF domain JHS88_17445 PF03150 Di-haem cytochrome c peroxidase JHS88_17445 PF00034 Cytochrome c JHS88_17450 PF09308 LuxQ, periplasmic JHS88_17450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_17450 PF00512 His Kinase A (phospho-acceptor) domain JHS88_17450 PF00072 Response regulator receiver domain JHS88_17465 PF04116 Fatty acid hydroxylase superfamily JHS88_17505 PF01048 Phosphorylase superfamily JHS88_17510 PF00563 EAL domain JHS88_17510 PF00990 Diguanylate cyclase, GGDEF domain JHS88_17515 PF05025 RbsD / FucU transport protein family JHS88_17520 PF00005 ABC transporter JHS88_17525 PF02653 Branched-chain amino acid transport system / permease component JHS88_17530 PF13407 Periplasmic binding protein domain JHS88_17535 PF00294 pfkB family carbohydrate kinase JHS88_17540 PF00356 Bacterial regulatory proteins, lacI family JHS88_17550 PF04973 Nicotinamide mononucleotide transporter JHS88_17555 PF01048 Phosphorylase superfamily JHS88_17575 PF00072 Response regulator receiver domain JHS88_17575 PF00486 Transcriptional regulatory protein, C terminal JHS88_17590 PF00245 Alkaline phosphatase JHS88_17600 PF01483 Proprotein convertase P-domain JHS88_17600 PF00082 Subtilase family JHS88_17610 PF00072 Response regulator receiver domain JHS88_17610 PF00990 Diguanylate cyclase, GGDEF domain JHS88_17615 PF03222 Tryptophan/tyrosine permease family JHS88_17620 PF00583 Acetyltransferase (GNAT) family JHS88_17625 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JHS88_17625 PF00384 Molybdopterin oxidoreductase JHS88_17625 PF01568 Molydopterin dinucleotide binding domain JHS88_17630 PF10414 Sirohaem synthase dimerisation region JHS88_17630 PF14824 Sirohaem biosynthesis protein central JHS88_17630 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JHS88_17635 PF02885 Glycosyl transferase family, helical bundle domain JHS88_17635 PF00591 Glycosyl transferase family, a/b domain JHS88_17640 PF01738 Dienelactone hydrolase family JHS88_17645 PF08376 Nitrate and nitrite sensing JHS88_17645 PF03861 ANTAR domain JHS88_17655 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_17660 PF00005 ABC transporter JHS88_17665 PF18267 Rubredoxin NAD+ reductase C-terminal domain JHS88_17665 PF13806 Rieske-like [2Fe-2S] domain JHS88_17665 PF04324 BFD-like [2Fe-2S] binding domain JHS88_17665 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JHS88_17665 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JHS88_17665 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS88_17680 PF00440 Bacterial regulatory proteins, tetR family JHS88_17680 PF08361 MAATS-type transcriptional repressor, C-terminal region JHS88_17695 PF00211 Adenylate and Guanylate cyclase catalytic domain JHS88_17695 PF00072 Response regulator receiver domain JHS88_17720 PF00069 Protein kinase domain JHS88_17720 PF03793 PASTA domain JHS88_17735 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE JHS88_17740 PF13677 Membrane MotB of proton-channel complex MotA/MotB JHS88_17740 PF00691 OmpA family JHS88_17745 PF06744 Type VI secretion protein IcmF C-terminal JHS88_17745 PF14331 ImcF-related N-terminal domain JHS88_17745 PF06761 Intracellular multiplication and human macrophage-killing JHS88_17765 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 JHS88_17770 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath JHS88_17775 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath JHS88_17790 PF05947 Type VI secretion system, TssF JHS88_17800 PF00004 ATPase family associated with various cellular activities (AAA) JHS88_17800 PF07724 AAA domain (Cdc48 subfamily) JHS88_17800 PF10431 C-terminal, D2-small domain, of ClpB protein JHS88_17800 PF17871 AAA lid domain JHS88_17810 PF04717 Type VI secretion system, phage-baseplate injector JHS88_17810 PF06715 Gp5 C-terminal repeat (3 copies) JHS88_17825 PF12320 Type 5 capsule protein repressor C-terminal domain JHS88_17825 PF00149 Calcineurin-like phosphoesterase JHS88_17830 PF13476 AAA domain JHS88_17850 PF08212 Lipocalin-like domain JHS88_17860 PF07690 Major Facilitator Superfamily JHS88_17870 PF03606 C4-dicarboxylate anaerobic carrier JHS88_17875 PF00034 Cytochrome c JHS88_17880 PF01212 Beta-eliminating lyase JHS88_17890 PF12592 Protein of unknown function (DUF3763) JHS88_17890 PF17868 AAA lid domain JHS88_17890 PF07728 AAA domain (dynein-related subfamily) JHS88_17895 PF05762 VWA domain containing CoxE-like protein JHS88_17910 PF03466 LysR substrate binding domain JHS88_17910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_17915 PF01565 FAD binding domain JHS88_17915 PF09330 D-lactate dehydrogenase, membrane binding JHS88_17935 PF00842 Alanine racemase, C-terminal domain JHS88_17935 PF01168 Alanine racemase, N-terminal domain JHS88_17955 PF00128 Alpha amylase, catalytic domain JHS88_17955 PF09154 Domain of unknown function (DUF1939) JHS88_17975 PF13462 Thioredoxin JHS88_17975 PF06965 Na+/H+ antiporter 1 JHS88_18010 PF01272 Transcription elongation factor, GreA/GreB, C-term JHS88_18010 PF14760 Rnk N-terminus JHS88_18015 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JHS88_18015 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JHS88_18015 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS88_18015 PF04324 BFD-like [2Fe-2S] binding domain JHS88_18015 PF18267 Rubredoxin NAD+ reductase C-terminal domain JHS88_18020 PF13806 Rieske-like [2Fe-2S] domain JHS88_18025 PF01226 Formate/nitrite transporter JHS88_18030 PF10414 Sirohaem synthase dimerisation region JHS88_18030 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JHS88_18030 PF14824 Sirohaem biosynthesis protein central JHS88_18045 PF03605 Anaerobic c4-dicarboxylate membrane transporter JHS88_18055 PF07715 TonB-dependent Receptor Plug Domain JHS88_18055 PF00593 TonB dependent receptor JHS88_18070 PF11756 Nitrous oxide-stimulated promoter JHS88_18075 PF01554 MatE JHS88_18080 PF00512 His Kinase A (phospho-acceptor) domain JHS88_18080 PF07494 Two component regulator propeller JHS88_18080 PF07495 Y_Y_Y domain JHS88_18080 PF00072 Response regulator receiver domain JHS88_18080 PF12833 Helix-turn-helix domain JHS88_18080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_18085 PF07690 Major Facilitator Superfamily JHS88_18090 PF00085 Thioredoxin JHS88_18095 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JHS88_18095 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JHS88_18115 PF01238 Phosphomannose isomerase type I JHS88_18120 PF07690 Major Facilitator Superfamily JHS88_18125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_18125 PF07730 Histidine kinase JHS88_18125 PF05231 MASE1 JHS88_18130 PF00072 Response regulator receiver domain JHS88_18130 PF00196 Bacterial regulatory proteins, luxR family JHS88_18135 PF07690 Major Facilitator Superfamily JHS88_18140 PF02634 FdhD/NarQ family JHS88_18145 PF03466 LysR substrate binding domain JHS88_18145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_18150 PF00384 Molybdopterin oxidoreductase JHS88_18155 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JHS88_18155 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS88_18170 PF04143 Sulphur transport JHS88_18180 PF00873 AcrB/AcrD/AcrF family JHS88_18185 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS88_18195 PF13597 Anaerobic ribonucleoside-triphosphate reductase JHS88_18195 PF03477 ATP cone domain JHS88_18205 PF01554 MatE JHS88_18210 PF12833 Helix-turn-helix domain JHS88_18215 PF00155 Aminotransferase class I and II JHS88_18220 PF08443 RimK-like ATP-grasp domain JHS88_18220 PF18030 RimK PreATP-grasp domain JHS88_18230 PF04076 Bacterial OB fold (BOF) protein JHS88_18235 PF07685 CobB/CobQ-like glutamine amidotransferase domain JHS88_18245 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_18250 PF00005 ABC transporter JHS88_18250 PF03459 TOBE domain JHS88_18260 PF01590 GAF domain JHS88_18260 PF00990 Diguanylate cyclase, GGDEF domain JHS88_18260 PF00563 EAL domain JHS88_18260 PF00360 Phytochrome region JHS88_18270 PF00990 Diguanylate cyclase, GGDEF domain JHS88_18285 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch JHS88_18285 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JHS88_18285 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JHS88_18290 PF02233 NAD(P) transhydrogenase beta subunit JHS88_18300 PF00072 Response regulator receiver domain JHS88_18300 PF00486 Transcriptional regulatory protein, C terminal JHS88_18315 PF03701 Uncharacterised protein family (UPF0181) JHS88_18320 PF00582 Universal stress protein family JHS88_18330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_18330 PF03466 LysR substrate binding domain JHS88_18410 PF01253 Translation initiation factor SUI1 JHS88_18420 PF01820 D-ala D-ala ligase N-terminus JHS88_18420 PF07478 D-ala D-ala ligase C-terminus JHS88_18430 PF00583 Acetyltransferase (GNAT) family JHS88_18430 PF13380 CoA binding domain JHS88_18430 PF13607 Succinyl-CoA ligase like flavodoxin domain JHS88_18435 PF03466 LysR substrate binding domain JHS88_18435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_18440 PF07715 TonB-dependent Receptor Plug Domain JHS88_18440 PF00593 TonB dependent receptor JHS88_18445 PF16363 GDP-mannose 4,6 dehydratase JHS88_18450 PF05231 MASE1 JHS88_18450 PF00563 EAL domain JHS88_18450 PF13426 PAS domain JHS88_18450 PF08447 PAS fold JHS88_18450 PF08448 PAS fold JHS88_18450 PF00990 Diguanylate cyclase, GGDEF domain JHS88_18455 PF03746 LamB/YcsF family JHS88_18460 PF02682 Carboxyltransferase domain, subdomain C and D JHS88_18465 PF02626 Carboxyltransferase domain, subdomain A and B JHS88_18480 PF00005 ABC transporter JHS88_18485 PF13472 GDSL-like Lipase/Acylhydrolase family JHS88_18490 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase JHS88_18490 PF07055 Enoyl reductase FAD binding domain JHS88_18490 PF12241 Trans-2-enoyl-CoA reductase catalytic region JHS88_18495 PF13188 PAS domain JHS88_18495 PF00990 Diguanylate cyclase, GGDEF domain JHS88_18495 PF03707 Bacterial signalling protein N terminal repeat JHS88_18495 PF00563 EAL domain JHS88_18505 PF00684 DnaJ central domain JHS88_18505 PF01556 DnaJ C terminal domain JHS88_18505 PF00226 DnaJ domain JHS88_18530 PF12793 Sugar transport-related sRNA regulator N-term JHS88_18530 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JHS88_18540 PF03061 Thioesterase superfamily JHS88_18555 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JHS88_18560 PF12262 Bacterial virulence factor lipase N-terminal JHS88_18575 PF03741 Integral membrane protein TerC family JHS88_18580 PF02872 5'-nucleotidase, C-terminal domain JHS88_18580 PF00149 Calcineurin-like phosphoesterase JHS88_18585 PF11398 Protein of unknown function (DUF2813) JHS88_18590 PF06496 Protein of unknown function (DUF1097) JHS88_18595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_18595 PF03466 LysR substrate binding domain JHS88_18600 PF01226 Formate/nitrite transporter JHS88_18605 PF04264 YceI-like domain JHS88_18610 PF01292 Prokaryotic cytochrome b561 JHS88_18625 PF12792 CSS motif domain associated with EAL JHS88_18625 PF00563 EAL domain JHS88_18630 PF00271 Helicase conserved C-terminal domain JHS88_18630 PF00270 DEAD/DEAH box helicase JHS88_18635 PF04336 Acyl carrier protein phosphodiesterase JHS88_18640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS88_18645 PF13419 Haloacid dehalogenase-like hydrolase JHS88_18650 PF11849 Domain of unknown function (DUF3369) JHS88_18665 PF00294 pfkB family carbohydrate kinase JHS88_18670 PF01268 Formate--tetrahydrofolate ligase JHS88_18675 PF00483 Nucleotidyl transferase JHS88_18680 PF06483 Chitinase C JHS88_18680 PF00704 Glycosyl hydrolases family 18 JHS88_18685 PF06719 AraC-type transcriptional regulator N-terminus JHS88_18685 PF12833 Helix-turn-helix domain JHS88_18690 PF00465 Iron-containing alcohol dehydrogenase JHS88_18700 PF02954 Bacterial regulatory protein, Fis family JHS88_18700 PF00072 Response regulator receiver domain JHS88_18700 PF14532 Sigma-54 interaction domain JHS88_18705 PF00512 His Kinase A (phospho-acceptor) domain JHS88_18705 PF00672 HAMP domain JHS88_18705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_18715 PF07690 Major Facilitator Superfamily JHS88_18720 PF00224 Pyruvate kinase, barrel domain JHS88_18720 PF02887 Pyruvate kinase, alpha/beta domain JHS88_18725 PF00005 ABC transporter JHS88_18730 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_18735 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS88_18740 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_18745 PF00990 Diguanylate cyclase, GGDEF domain JHS88_18745 PF01590 GAF domain JHS88_18745 PF00989 PAS fold JHS88_18745 PF00563 EAL domain JHS88_18760 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JHS88_18760 PF00356 Bacterial regulatory proteins, lacI family JHS88_18765 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JHS88_18765 PF00381 PTS HPr component phosphorylation site JHS88_18770 PF00294 pfkB family carbohydrate kinase JHS88_18775 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JHS88_18775 PF02378 Phosphotransferase system, EIIC JHS88_18785 PF00873 AcrB/AcrD/AcrF family JHS88_18795 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS88_18805 PF08669 Glycine cleavage T-protein C-terminal barrel domain JHS88_18805 PF01571 Aminomethyltransferase folate-binding domain JHS88_18815 PF00464 Serine hydroxymethyltransferase JHS88_18820 PF01597 Glycine cleavage H-protein JHS88_18825 PF02347 Glycine cleavage system P-protein JHS88_18870 PF17848 Acetyl-coA carboxylase zinc finger domain JHS88_18870 PF01039 Carboxyl transferase domain JHS88_18875 PF03466 LysR substrate binding domain JHS88_18875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_18880 PF07733 Bacterial DNA polymerase III alpha NTPase domain JHS88_18880 PF14579 Helix-hairpin-helix motif JHS88_18880 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JHS88_18880 PF00929 Exonuclease JHS88_18880 PF11490 DNA polymerase III polC-type N-terminus II JHS88_18880 PF02811 PHP domain JHS88_18905 PF02253 Phospholipase A1 JHS88_18915 PF00376 MerR family regulatory protein JHS88_18915 PF09278 MerR, DNA binding JHS88_18920 PF01327 Polypeptide deformylase JHS88_18950 PF03448 MgtE intracellular N domain JHS88_18950 PF01769 Divalent cation transporter JHS88_18950 PF00571 CBS domain JHS88_18970 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JHS88_18975 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JHS88_18985 PF01757 Acyltransferase family JHS88_18995 PF09722 Protein of unknown function (DUF2384) JHS88_19000 PF00141 Peroxidase JHS88_19005 PF01645 Conserved region in glutamate synthase JHS88_19005 PF13187 4Fe-4S dicluster domain JHS88_19015 PF00072 Response regulator receiver domain JHS88_19015 PF12431 Transcriptional regulator JHS88_19020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_19020 PF00989 PAS fold JHS88_19020 PF17203 Single cache domain 3 JHS88_19020 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain JHS88_19025 PF00939 Sodium:sulfate symporter transmembrane region JHS88_19030 PF00171 Aldehyde dehydrogenase family JHS88_19050 PF00892 EamA-like transporter family JHS88_19055 PF00893 Small Multidrug Resistance protein JHS88_19060 PF07504 Fungalysin/Thermolysin Propeptide Motif JHS88_19060 PF03413 Peptidase propeptide and YPEB domain JHS88_19060 PF01447 Thermolysin metallopeptidase, catalytic domain JHS88_19060 PF02868 Thermolysin metallopeptidase, alpha-helical domain JHS88_19060 PF04151 Bacterial pre-peptidase C-terminal domain JHS88_19070 PF01569 PAP2 superfamily JHS88_19080 PF00892 EamA-like transporter family JHS88_19095 PF01584 CheW-like domain JHS88_19095 PF00072 Response regulator receiver domain JHS88_19115 PF00196 Bacterial regulatory proteins, luxR family JHS88_19115 PF00072 Response regulator receiver domain JHS88_19125 PF00990 Diguanylate cyclase, GGDEF domain JHS88_19130 PF00072 Response regulator receiver domain JHS88_19130 PF00196 Bacterial regulatory proteins, luxR family JHS88_19135 PF00563 EAL domain JHS88_19135 PF00990 Diguanylate cyclase, GGDEF domain JHS88_19135 PF03707 Bacterial signalling protein N terminal repeat JHS88_19135 PF13188 PAS domain JHS88_19140 PF09456 RcsC Alpha-Beta-Loop (ABL) JHS88_19140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_19140 PF00512 His Kinase A (phospho-acceptor) domain JHS88_19140 PF00072 Response regulator receiver domain JHS88_19150 PF03466 LysR substrate binding domain JHS88_19150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_19165 PF05736 OprF membrane domain JHS88_19165 PF00691 OmpA family JHS88_19200 PF13737 Transposase DDE domain JHS88_19210 PF00437 Type II/IV secretion system protein JHS88_19225 PF13629 Pilus formation protein N terminal region JHS88_19225 PF04972 BON domain JHS88_19225 PF00263 Bacterial type II and III secretion system protein JHS88_19245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_19245 PF03466 LysR substrate binding domain JHS88_19250 PF12833 Helix-turn-helix domain JHS88_19260 PF04151 Bacterial pre-peptidase C-terminal domain JHS88_19260 PF08453 Peptidase family M9 N-terminal JHS88_19260 PF01752 Collagenase JHS88_19270 PF01926 50S ribosome-binding GTPase JHS88_19275 PF00155 Aminotransferase class I and II JHS88_19280 PF00072 Response regulator receiver domain JHS88_19280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_19290 PF00814 Glycoprotease family JHS88_19290 PF00583 Acetyltransferase (GNAT) family JHS88_19300 PF03606 C4-dicarboxylate anaerobic carrier JHS88_19305 PF04011 LemA family JHS88_19310 PF01435 Peptidase family M48 JHS88_19325 PF08774 VRR-NUC domain JHS88_19325 PF18081 Fanconi anemia-associated nuclease SAP domain JHS88_19335 PF13186 Iron-sulfur cluster-binding domain JHS88_19335 PF04055 Radical SAM superfamily JHS88_19350 PF04076 Bacterial OB fold (BOF) protein JHS88_19355 PF00781 Diacylglycerol kinase catalytic domain JHS88_19360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_19360 PF03466 LysR substrate binding domain JHS88_19365 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JHS88_19365 PF01872 RibD C-terminal domain JHS88_19380 PF00092 von Willebrand factor type A domain JHS88_19395 PF17863 AAA lid domain JHS88_19395 PF07726 ATPase family associated with various cellular activities (AAA) JHS88_19400 PF04055 Radical SAM superfamily JHS88_19400 PF13186 Iron-sulfur cluster-binding domain JHS88_19405 PF00884 Sulfatase JHS88_19410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_19410 PF03466 LysR substrate binding domain JHS88_19420 PF00884 Sulfatase JHS88_19425 PF16385 Domain of unknown function JHS88_19425 PF00884 Sulfatase JHS88_19430 PF00072 Response regulator receiver domain JHS88_19430 PF00486 Transcriptional regulatory protein, C terminal JHS88_19445 PF00072 Response regulator receiver domain JHS88_19445 PF00512 His Kinase A (phospho-acceptor) domain JHS88_19445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_19445 PF00672 HAMP domain JHS88_19445 PF01627 Hpt domain JHS88_19450 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JHS88_19455 PF02142 MGS-like domain JHS88_19460 PF12462 DNA helicase IV / RNA helicase N terminal JHS88_19460 PF00580 UvrD/REP helicase N-terminal domain JHS88_19460 PF13361 UvrD-like helicase C-terminal domain JHS88_19465 PF12805 FUSC-like inner membrane protein yccS JHS88_19495 PF07715 TonB-dependent Receptor Plug Domain JHS88_19495 PF00593 TonB dependent receptor JHS88_19505 PF13411 MerR HTH family regulatory protein JHS88_19510 PF00005 ABC transporter JHS88_19515 PF01032 FecCD transport family JHS88_19520 PF01032 FecCD transport family JHS88_19525 PF01497 Periplasmic binding protein JHS88_19545 PF04314 Copper chaperone PCu(A)C JHS88_19550 PF00012 Hsp70 protein JHS88_19565 PF00676 Dehydrogenase E1 component JHS88_19570 PF02779 Transketolase, pyrimidine binding domain JHS88_19570 PF02780 Transketolase, C-terminal domain JHS88_19575 PF00364 Biotin-requiring enzyme JHS88_19575 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JHS88_19575 PF02817 e3 binding domain JHS88_19585 PF00043 Glutathione S-transferase, C-terminal domain JHS88_19585 PF02798 Glutathione S-transferase, N-terminal domain JHS88_19590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_19590 PF03466 LysR substrate binding domain JHS88_19600 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_19605 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_19610 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS88_19615 PF00005 ABC transporter JHS88_19620 PF03466 LysR substrate binding domain JHS88_19620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_19635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_19635 PF03466 LysR substrate binding domain JHS88_19640 PF01565 FAD binding domain JHS88_19640 PF08031 Berberine and berberine like JHS88_19645 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JHS88_19660 PF13737 Transposase DDE domain JHS88_19665 PF01040 UbiA prenyltransferase family JHS88_19675 PF00510 Cytochrome c oxidase subunit III JHS88_19680 PF00115 Cytochrome C and Quinol oxidase polypeptide I JHS88_19685 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JHS88_19685 PF06481 COX Aromatic Rich Motif JHS88_19695 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JHS88_19695 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JHS88_19700 PF00378 Enoyl-CoA hydratase/isomerase JHS88_19705 PF00378 Enoyl-CoA hydratase/isomerase JHS88_19710 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JHS88_19710 PF02770 Acyl-CoA dehydrogenase, middle domain JHS88_19710 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JHS88_19715 PF00171 Aldehyde dehydrogenase family JHS88_19720 PF02803 Thiolase, C-terminal domain JHS88_19720 PF00108 Thiolase, N-terminal domain JHS88_19725 PF00376 MerR family regulatory protein JHS88_19725 PF09278 MerR, DNA binding JHS88_19730 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JHS88_19730 PF02770 Acyl-CoA dehydrogenase, middle domain JHS88_19730 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JHS88_19735 PF01039 Carboxyl transferase domain JHS88_19740 PF00378 Enoyl-CoA hydratase/isomerase JHS88_19745 PF00682 HMGL-like JHS88_19750 PF10063 Uncharacterized integral membrane protein (DUF2301) JHS88_19760 PF13426 PAS domain JHS88_19760 PF08447 PAS fold JHS88_19760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS88_19765 PF00871 Acetokinase family JHS88_19770 PF00990 Diguanylate cyclase, GGDEF domain JHS88_19770 PF13426 PAS domain JHS88_19770 PF00563 EAL domain JHS88_19775 PF03880 DbpA RNA binding domain JHS88_19775 PF00270 DEAD/DEAH box helicase JHS88_19775 PF00271 Helicase conserved C-terminal domain JHS88_19780 PF00575 S1 RNA binding domain JHS88_19780 PF08206 Ribonuclease B OB domain JHS88_19780 PF00773 RNB domain JHS88_19785 PF12833 Helix-turn-helix domain JHS88_19795 PF12849 PBP superfamily domain JHS88_19800 PF01575 MaoC like domain JHS88_19815 PF12729 Four helix bundle sensory module for signal transduction JHS88_19815 PF00672 HAMP domain JHS88_19815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS88_19820 PF00005 ABC transporter JHS88_19825 PF12792 CSS motif domain associated with EAL JHS88_19825 PF00563 EAL domain JHS88_19845 PF00270 DEAD/DEAH box helicase JHS88_19845 PF00271 Helicase conserved C-terminal domain JHS88_19850 PF07683 Cobalamin synthesis protein cobW C-terminal domain JHS88_19850 PF02492 CobW/HypB/UreG, nucleotide-binding domain JHS88_19860 PF01470 Pyroglutamyl peptidase JHS88_19870 PF00291 Pyridoxal-phosphate dependent enzyme JHS88_19875 PF09905 DNA-binding protein VF530 JHS88_19880 PF00271 Helicase conserved C-terminal domain JHS88_19880 PF00270 DEAD/DEAH box helicase JHS88_19885 PF12843 Putative quorum-sensing-regulated virulence factor JHS88_19905 PF01329 Pterin 4 alpha carbinolamine dehydratase JHS88_19910 PF00351 Biopterin-dependent aromatic amino acid hydroxylase JHS88_19915 PF00501 AMP-binding enzyme JHS88_19915 PF13193 AMP-binding enzyme C-terminal domain JHS88_19925 PF03466 LysR substrate binding domain JHS88_19925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_19945 PF00892 EamA-like transporter family JHS88_19960 PF00465 Iron-containing alcohol dehydrogenase JHS88_19965 PF07995 Glucose / Sorbosone dehydrogenase JHS88_19975 PF00210 Ferritin-like domain JHS88_19980 PF00672 HAMP domain JHS88_19980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS88_19980 PF17200 Single Cache domain 2 JHS88_19990 PF00005 ABC transporter JHS88_19990 PF02687 FtsX-like permease family JHS88_19990 PF12704 MacB-like periplasmic core domain JHS88_19995 PF02687 FtsX-like permease family JHS88_19995 PF00005 ABC transporter JHS88_19995 PF12704 MacB-like periplasmic core domain JHS88_20010 PF00990 Diguanylate cyclase, GGDEF domain JHS88_20015 PF13426 PAS domain JHS88_20015 PF08447 PAS fold JHS88_20015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS88_20025 PF00313 'Cold-shock' DNA-binding domain JHS88_20055 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JHS88_20055 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JHS88_20060 PF01040 UbiA prenyltransferase family JHS88_20065 PF02628 Cytochrome oxidase assembly protein JHS88_20085 PF00510 Cytochrome c oxidase subunit III JHS88_20090 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 JHS88_20095 PF00115 Cytochrome C and Quinol oxidase polypeptide I JHS88_20100 PF02790 Cytochrome C oxidase subunit II, transmembrane domain JHS88_20100 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JHS88_20105 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JHS88_20105 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JHS88_20105 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JHS88_20105 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JHS88_20115 PF01810 LysE type translocator JHS88_20120 PF12833 Helix-turn-helix domain JHS88_20135 PF01557 Fumarylacetoacetate (FAA) hydrolase family JHS88_20145 PF00267 Gram-negative porin JHS88_20150 PF00892 EamA-like transporter family JHS88_20155 PF00462 Glutaredoxin JHS88_20165 PF07690 Major Facilitator Superfamily JHS88_20170 PF03466 LysR substrate binding domain JHS88_20170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_20175 PF00563 EAL domain JHS88_20175 PF00990 Diguanylate cyclase, GGDEF domain JHS88_20175 PF08447 PAS fold JHS88_20175 PF08448 PAS fold JHS88_20180 PF01551 Peptidase family M23 JHS88_20180 PF08525 Opacity-associated protein A N-terminal motif JHS88_20180 PF01476 LysM domain JHS88_20200 PF07670 Nucleoside recognition JHS88_20205 PF02743 Cache domain JHS88_20205 PF00672 HAMP domain JHS88_20205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS88_20215 PF03222 Tryptophan/tyrosine permease family JHS88_20250 PF08240 Alcohol dehydrogenase GroES-like domain JHS88_20250 PF00107 Zinc-binding dehydrogenase JHS88_20255 PF02378 Phosphotransferase system, EIIC JHS88_20255 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JHS88_20260 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JHS88_20275 PF01758 Sodium Bile acid symporter family JHS88_20285 PF01161 Phosphatidylethanolamine-binding protein JHS88_20290 PF02567 Phenazine biosynthesis-like protein JHS88_20295 PF10282 Lactonase, 7-bladed beta-propeller JHS88_20300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS88_20300 PF00672 HAMP domain JHS88_20300 PF17200 Single Cache domain 2 JHS88_20310 PF00005 ABC transporter JHS88_20350 PF00873 AcrB/AcrD/AcrF family JHS88_20370 PF00990 Diguanylate cyclase, GGDEF domain JHS88_20380 PF13302 Acetyltransferase (GNAT) domain JHS88_20390 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JHS88_20395 PF00873 AcrB/AcrD/AcrF family JHS88_20400 PF13533 Biotin-lipoyl like JHS88_20410 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JHS88_20410 PF00326 Prolyl oligopeptidase family JHS88_20415 PF12848 ABC transporter JHS88_20415 PF00005 ABC transporter JHS88_20420 PF00582 Universal stress protein family JHS88_20425 PF02525 Flavodoxin-like fold JHS88_20430 PF00999 Sodium/hydrogen exchanger family JHS88_20430 PF02254 TrkA-N domain JHS88_20445 PF00128 Alpha amylase, catalytic domain JHS88_20455 PF01752 Collagenase JHS88_20455 PF08453 Peptidase family M9 N-terminal JHS88_20455 PF04151 Bacterial pre-peptidase C-terminal domain JHS88_20470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_20470 PF03466 LysR substrate binding domain JHS88_20475 PF00210 Ferritin-like domain JHS88_20480 PF00141 Peroxidase JHS88_20505 PF13087 AAA domain JHS88_20505 PF13091 PLD-like domain JHS88_20520 PF00072 Response regulator receiver domain JHS88_20520 PF01584 CheW-like domain JHS88_20530 PF01243 Pyridoxamine 5'-phosphate oxidase JHS88_20535 PF06228 Haem utilisation ChuX/HutX JHS88_20540 PF04055 Radical SAM superfamily JHS88_20545 PF03544 Gram-negative bacterial TonB protein C-terminal JHS88_20550 PF01618 MotA/TolQ/ExbB proton channel family JHS88_20555 PF02472 Biopolymer transport protein ExbD/TolR JHS88_20565 PF01032 FecCD transport family JHS88_20570 PF00005 ABC transporter JHS88_20610 PF01467 Cytidylyltransferase-like JHS88_20615 PF02540 NAD synthase JHS88_20620 PF00111 2Fe-2S iron-sulfur cluster binding domain JHS88_20620 PF03473 MOSC domain JHS88_20620 PF03476 MOSC N-terminal beta barrel domain JHS88_20620 PF03473 MOSC domain JHS88_20620 PF03476 MOSC N-terminal beta barrel domain JHS88_20620 PF00111 2Fe-2S iron-sulfur cluster binding domain JHS88_20625 PF01679 Proteolipid membrane potential modulator JHS88_20630 PF01979 Amidohydrolase family JHS88_20635 PF05661 Protein of unknown function (DUF808) JHS88_20665 PF12833 Helix-turn-helix domain JHS88_20665 PF01497 Periplasmic binding protein JHS88_20670 PF00155 Aminotransferase class I and II JHS88_20695 PF00535 Glycosyl transferase family 2 JHS88_20710 PF00270 DEAD/DEAH box helicase JHS88_20710 PF00271 Helicase conserved C-terminal domain JHS88_20720 PF03466 LysR substrate binding domain JHS88_20720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_20725 PF03466 LysR substrate binding domain JHS88_20725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_20735 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JHS88_20740 PF08240 Alcohol dehydrogenase GroES-like domain JHS88_20740 PF00107 Zinc-binding dehydrogenase JHS88_20755 PF12833 Helix-turn-helix domain JHS88_20755 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JHS88_20760 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) JHS88_20775 PF03466 LysR substrate binding domain JHS88_20775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_20780 PF00709 Adenylosuccinate synthetase JHS88_20785 PF00710 Asparaginase, N-terminal JHS88_20785 PF17763 Glutaminase/Asparaginase C-terminal domain JHS88_20790 PF03618 Kinase/pyrophosphorylase JHS88_20795 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JHS88_20795 PF00391 PEP-utilising enzyme, mobile domain JHS88_20795 PF02896 PEP-utilising enzyme, TIM barrel domain JHS88_20810 PF00579 tRNA synthetases class I (W and Y) JHS88_20815 PF13416 Bacterial extracellular solute-binding protein JHS88_20825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_20825 PF03466 LysR substrate binding domain JHS88_20830 PF13533 Biotin-lipoyl like JHS88_20835 PF00873 AcrB/AcrD/AcrF family JHS88_20850 PF07694 5TMR of 5TMR-LYT JHS88_20850 PF00990 Diguanylate cyclase, GGDEF domain JHS88_20860 PF00196 Bacterial regulatory proteins, luxR family JHS88_20865 PF00703 Glycosyl hydrolases family 2 JHS88_20865 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JHS88_20865 PF02837 Glycosyl hydrolases family 2, sugar binding domain JHS88_20865 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 JHS88_20870 PF02028 BCCT, betaine/carnitine/choline family transporter JHS88_20875 PF00392 Bacterial regulatory proteins, gntR family JHS88_20875 PF07702 UTRA domain JHS88_20900 PF00005 ABC transporter JHS88_20900 PF08402 TOBE domain JHS88_20930 PF00873 AcrB/AcrD/AcrF family JHS88_20935 PF13533 Biotin-lipoyl like JHS88_20940 PF13091 PLD-like domain JHS88_20965 PF00376 MerR family regulatory protein JHS88_20965 PF09278 MerR, DNA binding JHS88_20975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_20975 PF03466 LysR substrate binding domain JHS88_20985 PF13378 Enolase C-terminal domain-like JHS88_20985 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JHS88_20990 PF00679 Elongation factor G C-terminus JHS88_20990 PF14492 Elongation Factor G, domain II JHS88_20990 PF03764 Elongation factor G, domain IV JHS88_20990 PF00009 Elongation factor Tu GTP binding domain JHS88_20990 PF03144 Elongation factor Tu domain 2 JHS88_21015 PF02001 Protein of unknown function DUF134 JHS88_21020 PF17185 NlpE C-terminal OB domain JHS88_21020 PF04170 NlpE N-terminal domain JHS88_21025 PF06629 MltA-interacting protein MipA JHS88_21035 PF00691 OmpA family JHS88_21035 PF01389 OmpA-like transmembrane domain JHS88_21040 PF03466 LysR substrate binding domain JHS88_21040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_21065 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain JHS88_21065 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family JHS88_21075 PF00857 Isochorismatase family JHS88_21085 PF06628 Catalase-related immune-responsive JHS88_21085 PF00199 Catalase JHS88_21095 PF00455 DeoR C terminal sensor domain JHS88_21095 PF08220 DeoR-like helix-turn-helix domain JHS88_21100 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JHS88_21105 PF01625 Peptide methionine sulfoxide reductase JHS88_21105 PF01641 SelR domain JHS88_21120 PF13737 Transposase DDE domain JHS88_21130 PF17678 Glycosyl hydrolase family 92 N-terminal domain JHS88_21130 PF07971 Glycosyl hydrolase family 92 JHS88_21135 PF17678 Glycosyl hydrolase family 92 N-terminal domain JHS88_21135 PF07971 Glycosyl hydrolase family 92 JHS88_21145 PF17678 Glycosyl hydrolase family 92 N-terminal domain JHS88_21145 PF07971 Glycosyl hydrolase family 92 JHS88_21150 PF17678 Glycosyl hydrolase family 92 N-terminal domain JHS88_21150 PF07971 Glycosyl hydrolase family 92 JHS88_21155 PF03060 Nitronate monooxygenase JHS88_21160 PF02872 5'-nucleotidase, C-terminal domain JHS88_21160 PF00149 Calcineurin-like phosphoesterase JHS88_21170 PF08359 YsiA-like protein, C-terminal region JHS88_21170 PF00440 Bacterial regulatory proteins, tetR family JHS88_21185 PF03466 LysR substrate binding domain JHS88_21185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_21190 PF01810 LysE type translocator JHS88_21205 PF00118 TCP-1/cpn60 chaperonin family JHS88_21210 PF00166 Chaperonin 10 Kd subunit JHS88_21215 PF00581 Rhodanese-like domain JHS88_21240 PF01070 FMN-dependent dehydrogenase JHS88_21260 PF00669 Bacterial flagellin N-terminal helical region JHS88_21270 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JHS88_21270 PF10135 Rod binding protein JHS88_21275 PF02119 Flagellar P-ring protein JHS88_21280 PF02107 Flagellar L-ring protein JHS88_21285 PF00460 Flagella basal body rod protein JHS88_21285 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JHS88_21290 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JHS88_21290 PF00460 Flagella basal body rod protein JHS88_21295 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JHS88_21295 PF00460 Flagella basal body rod protein JHS88_21295 PF07559 Flagellar basal body protein FlaE JHS88_21300 PF03963 Flagellar hook capping protein - N-terminal region JHS88_21300 PF13860 FlgD Ig-like domain JHS88_21300 PF13861 FlgD Tudor-like domain JHS88_21305 PF00460 Flagella basal body rod protein JHS88_21305 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JHS88_21310 PF00460 Flagella basal body rod protein JHS88_21330 PF01464 Transglycosylase SLT domain JHS88_21335 PF08264 Anticodon-binding domain of tRNA JHS88_21335 PF00133 tRNA synthetases class I (I, L, M and V) JHS88_21355 PF03313 Serine dehydratase alpha chain JHS88_21355 PF03315 Serine dehydratase beta chain JHS88_21360 PF00854 POT family JHS88_21370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_21370 PF03466 LysR substrate binding domain JHS88_21380 PF03466 LysR substrate binding domain JHS88_21380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_21385 PF01389 OmpA-like transmembrane domain JHS88_21385 PF00691 OmpA family JHS88_21390 PF18027 Cytosolic carboxypeptidase N-terminal domain JHS88_21390 PF00246 Zinc carboxypeptidase JHS88_21395 PF01266 FAD dependent oxidoreductase JHS88_21400 PF04393 Protein of unknown function (DUF535) JHS88_21415 PF07702 UTRA domain JHS88_21415 PF00392 Bacterial regulatory proteins, gntR family JHS88_21420 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_21425 PF00005 ABC transporter JHS88_21440 PF00266 Aminotransferase class-V JHS88_21445 PF00202 Aminotransferase class-III JHS88_21450 PF13419 Haloacid dehalogenase-like hydrolase JHS88_21455 PF00356 Bacterial regulatory proteins, lacI family JHS88_21460 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JHS88_21470 PF03611 PTS system sugar-specific permease component JHS88_21480 PF00082 Subtilase family JHS88_21480 PF05922 Peptidase inhibitor I9 JHS88_21485 PF00657 GDSL-like Lipase/Acylhydrolase JHS88_21490 PF02321 Outer membrane efflux protein JHS88_21495 PF12704 MacB-like periplasmic core domain JHS88_21495 PF00005 ABC transporter JHS88_21495 PF02687 FtsX-like permease family JHS88_21500 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS88_21505 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JHS88_21510 PF00194 Eukaryotic-type carbonic anhydrase JHS88_21515 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) JHS88_21530 PF13419 Haloacid dehalogenase-like hydrolase JHS88_21535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_21535 PF03466 LysR substrate binding domain JHS88_21570 PF12464 Maltose acetyltransferase JHS88_21570 PF14602 Hexapeptide repeat of succinyl-transferase JHS88_21575 PF02566 OsmC-like protein JHS88_21580 PF01625 Peptide methionine sulfoxide reductase JHS88_21580 PF01641 SelR domain JHS88_21595 PF04244 Deoxyribodipyrimidine photo-lyase-related protein JHS88_21600 PF00875 DNA photolyase JHS88_21600 PF03441 FAD binding domain of DNA photolyase JHS88_21605 PF00990 Diguanylate cyclase, GGDEF domain JHS88_21620 PF00672 HAMP domain JHS88_21620 PF12729 Four helix bundle sensory module for signal transduction JHS88_21620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS88_21625 PF00990 Diguanylate cyclase, GGDEF domain JHS88_21625 PF05230 MASE2 domain JHS88_21630 PF13532 2OG-Fe(II) oxygenase superfamily JHS88_21640 PF07670 Nucleoside recognition JHS88_21640 PF01773 Na+ dependent nucleoside transporter N-terminus JHS88_21640 PF07662 Na+ dependent nucleoside transporter C-terminus JHS88_21655 PF01212 Beta-eliminating lyase JHS88_21665 PF01266 FAD dependent oxidoreductase JHS88_21680 PF05525 Branched-chain amino acid transport protein JHS88_21685 PF00990 Diguanylate cyclase, GGDEF domain JHS88_21685 PF08448 PAS fold JHS88_21690 PF00072 Response regulator receiver domain JHS88_21690 PF00158 Sigma-54 interaction domain JHS88_21690 PF02954 Bacterial regulatory protein, Fis family JHS88_21695 PF02743 Cache domain JHS88_21695 PF00512 His Kinase A (phospho-acceptor) domain JHS88_21695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_21700 PF00232 Glycosyl hydrolase family 1 JHS88_21725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_21725 PF03466 LysR substrate binding domain JHS88_21730 PF08443 RimK-like ATP-grasp domain JHS88_21730 PF18030 RimK PreATP-grasp domain JHS88_21735 PF08443 RimK-like ATP-grasp domain JHS88_21735 PF18030 RimK PreATP-grasp domain JHS88_21740 PF00753 Metallo-beta-lactamase superfamily JHS88_21745 PF17810 Arginine decarboxylase helical bundle domain JHS88_21745 PF17944 Arginine decarboxylase C-terminal helical extension JHS88_21745 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JHS88_21750 PF00491 Arginase family JHS88_21755 PF07690 Major Facilitator Superfamily JHS88_21760 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JHS88_21760 PF00326 Prolyl oligopeptidase family JHS88_21775 PF00950 ABC 3 transport family JHS88_21780 PF00005 ABC transporter JHS88_21785 PF01297 Zinc-uptake complex component A periplasmic JHS88_21825 PF02472 Biopolymer transport protein ExbD/TolR JHS88_21830 PF01618 MotA/TolQ/ExbB proton channel family JHS88_21835 PF01618 MotA/TolQ/ExbB proton channel family JHS88_21845 PF00593 TonB dependent receptor JHS88_21845 PF07715 TonB-dependent Receptor Plug Domain JHS88_21850 PF00672 HAMP domain JHS88_21850 PF00512 His Kinase A (phospho-acceptor) domain JHS88_21850 PF16750 Sensor domain of 2-component histidine kinase JHS88_21850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_21855 PF00072 Response regulator receiver domain JHS88_21855 PF00486 Transcriptional regulatory protein, C terminal JHS88_21860 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JHS88_21860 PF00056 lactate/malate dehydrogenase, NAD binding domain JHS88_21865 PF03009 Glycerophosphoryl diester phosphodiesterase family JHS88_21875 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JHS88_21875 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JHS88_21880 PF10928 Protein of unknown function (DUF2810) JHS88_21930 PF04013 Putative SAM-dependent RNA methyltransferase JHS88_21935 PF01523 Putative modulator of DNA gyrase JHS88_21940 PF01523 Putative modulator of DNA gyrase JHS88_21945 PF08543 Phosphomethylpyrimidine kinase JHS88_21950 PF00005 ABC transporter JHS88_21955 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_21960 PF09084 NMT1/THI5 like JHS88_21965 PF03070 TENA/THI-4/PQQC family JHS88_21970 PF02110 Hydroxyethylthiazole kinase family JHS88_21975 PF02581 Thiamine monophosphate synthase JHS88_21985 PF18364 Molybdopterin oxidoreductase N-terminal domain JHS88_21985 PF00384 Molybdopterin oxidoreductase JHS88_21985 PF01568 Molydopterin dinucleotide binding domain JHS88_21990 PF03264 NapC/NirT cytochrome c family, N-terminal region JHS88_22015 PF00583 Acetyltransferase (GNAT) family JHS88_22035 PF00392 Bacterial regulatory proteins, gntR family JHS88_22035 PF00155 Aminotransferase class I and II JHS88_22040 PF02595 Glycerate kinase family JHS88_22045 PF02447 GntP family permease JHS88_22050 PF13556 PucR C-terminal helix-turn-helix domain JHS88_22050 PF17853 GGDEF-like domain JHS88_22050 PF05651 Putative sugar diacid recognition JHS88_22085 PF03466 LysR substrate binding domain JHS88_22085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_22095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_22095 PF03466 LysR substrate binding domain JHS88_22100 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JHS88_22105 PF01661 Macro domain JHS88_22110 PF01204 Trehalase JHS88_22120 PF12706 Beta-lactamase superfamily domain JHS88_22130 PF07690 Major Facilitator Superfamily JHS88_22135 PF13533 Biotin-lipoyl like JHS88_22140 PF03922 OmpW family JHS88_22145 PF13599 Pentapeptide repeats (9 copies) JHS88_22160 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading JHS88_22160 PF18416 N-acetylglucosamine binding protein domain 2 JHS88_22165 PF01037 Lrp/AsnC ligand binding domain JHS88_22170 PF01810 LysE type translocator JHS88_22175 PF08021 Siderophore-interacting FAD-binding domain JHS88_22175 PF04954 Siderophore-interacting protein JHS88_22180 PF14583 Oligogalacturonate lyase JHS88_22185 PF00474 Sodium:solute symporter family JHS88_22190 PF13229 Right handed beta helix region JHS88_22205 PF01081 KDPG and KHG aldolase JHS88_22210 PF00294 pfkB family carbohydrate kinase JHS88_22225 PF07883 Cupin domain JHS88_22230 PF10688 Bacterial inner membrane protein JHS88_22240 PF01614 Bacterial transcriptional regulator JHS88_22240 PF09339 IclR helix-turn-helix domain JHS88_22255 PF03466 LysR substrate binding domain JHS88_22255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_22260 PF00797 N-acetyltransferase JHS88_22265 PF00107 Zinc-binding dehydrogenase JHS88_22265 PF08240 Alcohol dehydrogenase GroES-like domain JHS88_22270 PF00756 Putative esterase JHS88_22280 PF00990 Diguanylate cyclase, GGDEF domain JHS88_22280 PF17152 Periplasmic sensor domain JHS88_22295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_22295 PF03466 LysR substrate binding domain JHS88_22310 PF00849 RNA pseudouridylate synthase JHS88_22315 PF01554 MatE JHS88_22320 PF00990 Diguanylate cyclase, GGDEF domain JHS88_22320 PF00563 EAL domain JHS88_22330 PF06865 Pyrimidine/purine nucleoside phosphorylase JHS88_22340 PF08329 Chitinase A, N-terminal domain JHS88_22340 PF00704 Glycosyl hydrolases family 18 JHS88_22360 PF03600 Citrate transporter JHS88_22370 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JHS88_22380 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JHS88_22380 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JHS88_22385 PF06029 AlkA N-terminal domain JHS88_22385 PF00730 HhH-GPD superfamily base excision DNA repair protein JHS88_22395 PF07681 DoxX JHS88_22400 PF02678 Pirin JHS88_22400 PF17954 Quercetinase C-terminal cupin domain JHS88_22405 PF03466 LysR substrate binding domain JHS88_22405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_22420 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JHS88_22430 PF03616 Sodium/glutamate symporter JHS88_22435 PF00392 Bacterial regulatory proteins, gntR family JHS88_22435 PF00155 Aminotransferase class I and II JHS88_22440 PF00005 ABC transporter JHS88_22450 PF03616 Sodium/glutamate symporter JHS88_22455 PF00132 Bacterial transferase hexapeptide (six repeats) JHS88_22470 PF00672 HAMP domain JHS88_22470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS88_22470 PF17200 Single Cache domain 2 JHS88_22475 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JHS88_22485 PF04397 LytTr DNA-binding domain JHS88_22485 PF00072 Response regulator receiver domain JHS88_22490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_22490 PF06580 Histidine kinase JHS88_22490 PF07694 5TMR of 5TMR-LYT JHS88_22490 PF13492 GAF domain JHS88_22510 PF00005 ABC transporter JHS88_22520 PF01098 Cell cycle protein JHS88_22525 PF01709 Transcriptional regulator JHS88_22535 PF17149 Periplasmic sensor domain found in signal transduction proteins JHS88_22535 PF00672 HAMP domain JHS88_22535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_22535 PF00512 His Kinase A (phospho-acceptor) domain JHS88_22535 PF01627 Hpt domain JHS88_22535 PF00072 Response regulator receiver domain JHS88_22545 PF00925 GTP cyclohydrolase II JHS88_22545 PF08719 Domain of unknown function (DUF1768) JHS88_22555 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS88_22555 PF00005 ABC transporter JHS88_22560 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS88_22560 PF00005 ABC transporter JHS88_22575 PF13614 AAA domain JHS88_22575 PF18607 ParA helix turn helix domain JHS88_22580 PF08775 ParB family JHS88_22580 PF02195 ParB-like nuclease domain JHS88_22585 PF13718 GNAT acetyltransferase 2 JHS88_22585 PF05127 Helicase JHS88_22595 PF00132 Bacterial transferase hexapeptide (six repeats) JHS88_22605 PF03575 Peptidase family S51 JHS88_22610 PF00267 Gram-negative porin JHS88_22615 PF00367 phosphotransferase system, EIIB JHS88_22615 PF02378 Phosphotransferase system, EIIC JHS88_22620 PF01380 SIS domain JHS88_22625 PF01418 Helix-turn-helix domain, rpiR family JHS88_22625 PF01380 SIS domain JHS88_22630 PF00246 Zinc carboxypeptidase JHS88_22635 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JHS88_22640 PF03358 NADPH-dependent FMN reductase JHS88_22660 PF00664 ABC transporter transmembrane region JHS88_22660 PF00005 ABC transporter JHS88_22660 PF03412 Peptidase C39 family JHS88_22675 PF00529 HlyD membrane-fusion protein of T1SS JHS88_22680 PF00072 Response regulator receiver domain JHS88_22680 PF02954 Bacterial regulatory protein, Fis family JHS88_22680 PF00158 Sigma-54 interaction domain JHS88_22685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_22685 PF02743 Cache domain JHS88_22685 PF00512 His Kinase A (phospho-acceptor) domain JHS88_22695 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region JHS88_22695 PF01243 Pyridoxamine 5'-phosphate oxidase JHS88_22705 PF12833 Helix-turn-helix domain JHS88_22710 PF14850 DNA-binding domain of Proline dehydrogenase JHS88_22710 PF18327 Proline utilization A proline dehydrogenase N-terminal domain JHS88_22710 PF00171 Aldehyde dehydrogenase family JHS88_22710 PF01619 Proline dehydrogenase JHS88_22720 PF00474 Sodium:solute symporter family JHS88_22755 PF01037 Lrp/AsnC ligand binding domain JHS88_22780 PF13401 AAA domain JHS88_22780 PF09077 Mu B transposition protein, C terminal JHS88_22830 PF02810 SEC-C motif JHS88_22990 PF01555 DNA methylase JHS88_23015 PF00664 ABC transporter transmembrane region JHS88_23015 PF00005 ABC transporter JHS88_23025 PF12833 Helix-turn-helix domain JHS88_23025 PF06719 AraC-type transcriptional regulator N-terminus JHS88_23040 PF00270 DEAD/DEAH box helicase JHS88_23040 PF00271 Helicase conserved C-terminal domain JHS88_23045 PF03475 3-alpha domain JHS88_23045 PF03473 MOSC domain JHS88_23060 PF11975 Family 4 glycosyl hydrolase C-terminal domain JHS88_23060 PF02056 Family 4 glycosyl hydrolase JHS88_23065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_23065 PF03466 LysR substrate binding domain JHS88_23070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS88_23070 PF00672 HAMP domain JHS88_23070 PF02743 Cache domain JHS88_23080 PF04542 Sigma-70 region 2 JHS88_23080 PF08281 Sigma-70, region 4 JHS88_23085 PF01965 DJ-1/PfpI family JHS88_23085 PF12833 Helix-turn-helix domain JHS88_23090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_23090 PF03466 LysR substrate binding domain JHS88_23105 PF13192 Thioredoxin domain JHS88_23105 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS88_23110 PF00578 AhpC/TSA family JHS88_23110 PF10417 C-terminal domain of 1-Cys peroxiredoxin JHS88_23115 PF01047 MarR family JHS88_23120 PF02566 OsmC-like protein JHS88_23135 PF02311 AraC-like ligand binding domain JHS88_23135 PF12833 Helix-turn-helix domain JHS88_23145 PF11762 L-arabinose isomerase C-terminal domain JHS88_23145 PF02610 L-arabinose isomerase JHS88_23150 PF00596 Class II Aldolase and Adducin N-terminal domain JHS88_23155 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JHS88_23155 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JHS88_23160 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JHS88_23165 PF00005 ABC transporter JHS88_23170 PF02653 Branched-chain amino acid transport system / permease component JHS88_23175 PF01136 Peptidase family U32 JHS88_23185 PF00367 phosphotransferase system, EIIB JHS88_23185 PF02378 Phosphotransferase system, EIIC JHS88_23190 PF00486 Transcriptional regulatory protein, C terminal JHS88_23190 PF00072 Response regulator receiver domain JHS88_23195 PF08521 Two-component sensor kinase N-terminal JHS88_23195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_23195 PF00512 His Kinase A (phospho-acceptor) domain JHS88_23200 PF01547 Bacterial extracellular solute-binding protein JHS88_23205 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JHS88_23205 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JHS88_23210 PF04183 IucA / IucC family JHS88_23210 PF06276 Ferric iron reductase FhuF-like transporter JHS88_23220 PF04183 IucA / IucC family JHS88_23220 PF06276 Ferric iron reductase FhuF-like transporter JHS88_23230 PF07715 TonB-dependent Receptor Plug Domain JHS88_23230 PF00593 TonB dependent receptor JHS88_23235 PF07660 Secretin and TonB N terminus short domain JHS88_23235 PF00593 TonB dependent receptor JHS88_23235 PF07715 TonB-dependent Receptor Plug Domain JHS88_23240 PF01497 Periplasmic binding protein JHS88_23245 PF01032 FecCD transport family JHS88_23250 PF01032 FecCD transport family JHS88_23255 PF00005 ABC transporter JHS88_23260 PF00672 HAMP domain JHS88_23260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS88_23260 PF17200 Single Cache domain 2 JHS88_23265 PF00675 Insulinase (Peptidase family M16) JHS88_23265 PF05193 Peptidase M16 inactive domain JHS88_23275 PF01551 Peptidase family M23 JHS88_23275 PF04225 Opacity-associated protein A LysM-like domain JHS88_23285 PF07690 Major Facilitator Superfamily JHS88_23295 PF00128 Alpha amylase, catalytic domain JHS88_23295 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JHS88_23300 PF02264 LamB porin JHS88_23315 PF00128 Alpha amylase, catalytic domain JHS88_23315 PF02903 Alpha amylase, N-terminal ig-like domain JHS88_23315 PF16657 Maltogenic Amylase, C-terminal domain JHS88_23320 PF04231 Endonuclease I JHS88_23325 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JHS88_23325 PF03714 Bacterial pullanase-associated domain JHS88_23325 PF18494 Pullulanase Ins domain JHS88_23325 PF17967 Pullulanase N2 domain JHS88_23325 PF11852 Domain of unknown function (DUF3372) JHS88_23340 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain JHS88_23340 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain JHS88_23340 PF01276 Orn/Lys/Arg decarboxylase, major domain JHS88_23345 PF13520 Amino acid permease JHS88_23355 PF08543 Phosphomethylpyrimidine kinase JHS88_23365 PF00375 Sodium:dicarboxylate symporter family JHS88_23370 PF03193 RsgA GTPase JHS88_23375 PF00367 phosphotransferase system, EIIB JHS88_23375 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JHS88_23375 PF02378 Phosphotransferase system, EIIC JHS88_23385 PF02630 SCO1/SenC JHS88_23400 PF00196 Bacterial regulatory proteins, luxR family JHS88_23400 PF17874 MalT-like TPR region JHS88_23405 PF00343 Carbohydrate phosphorylase JHS88_23410 PF02446 4-alpha-glucanotransferase JHS88_23415 PF02806 Alpha amylase, C-terminal all-beta domain JHS88_23415 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JHS88_23415 PF00128 Alpha amylase, catalytic domain JHS88_23420 PF00912 Transglycosylase JHS88_23425 PF00128 Alpha amylase, catalytic domain JHS88_23440 PF07670 Nucleoside recognition JHS88_23445 PF07670 Nucleoside recognition JHS88_23450 PF01546 Peptidase family M20/M25/M40 JHS88_23450 PF07687 Peptidase dimerisation domain JHS88_23455 PF06803 Protein of unknown function (DUF1232) JHS88_23460 PF00375 Sodium:dicarboxylate symporter family JHS88_23470 PF03466 LysR substrate binding domain JHS88_23470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_23475 PF08803 Putative mono-oxygenase ydhR JHS88_23485 PF13807 G-rich domain on putative tyrosine kinase JHS88_23485 PF13614 AAA domain JHS88_23485 PF02706 Chain length determinant protein JHS88_23490 PF01451 Low molecular weight phosphotyrosine protein phosphatase JHS88_23495 PF02563 Polysaccharide biosynthesis/export protein JHS88_23495 PF10531 SLBB domain JHS88_23495 PF18412 Outer-membrane lipoprotein Wza C-terminal domain JHS88_23500 PF00881 Nitroreductase family JHS88_23505 PF01914 MarC family integral membrane protein JHS88_23510 PF01734 Patatin-like phospholipase JHS88_23515 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading JHS88_23515 PF18416 N-acetylglucosamine binding protein domain 2 JHS88_23520 PF17773 UPF0176 acylphosphatase like domain JHS88_23520 PF00581 Rhodanese-like domain JHS88_23530 PF00561 alpha/beta hydrolase fold JHS88_23535 PF00768 D-alanyl-D-alanine carboxypeptidase JHS88_23535 PF07943 Penicillin-binding protein 5, C-terminal domain JHS88_23540 PF00128 Alpha amylase, catalytic domain JHS88_23540 PF00686 Starch binding domain JHS88_23545 PF12833 Helix-turn-helix domain JHS88_23545 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JHS88_23550 PF00881 Nitroreductase family JHS88_23560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_23560 PF03466 LysR substrate binding domain JHS88_23565 PF09905 DNA-binding protein VF530 JHS88_23575 PF00175 Oxidoreductase NAD-binding domain JHS88_23575 PF00970 Oxidoreductase FAD-binding domain JHS88_23585 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) JHS88_23590 PF01594 AI-2E family transporter JHS88_23600 PF13533 Biotin-lipoyl like JHS88_23620 PF00892 EamA-like transporter family JHS88_23625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_23625 PF03466 LysR substrate binding domain JHS88_23630 PF07690 Major Facilitator Superfamily JHS88_23645 PF00583 Acetyltransferase (GNAT) family JHS88_23655 PF00923 Transaldolase/Fructose-6-phosphate aldolase JHS88_23660 PF04055 Radical SAM superfamily JHS88_23665 PF01228 Glycine radical JHS88_23665 PF02901 Pyruvate formate lyase-like JHS88_23685 PF08000 Bacterial PH domain JHS88_23695 PF00691 OmpA family JHS88_23695 PF13677 Membrane MotB of proton-channel complex MotA/MotB JHS88_23700 PF01618 MotA/TolQ/ExbB proton channel family JHS88_23705 PF04542 Sigma-70 region 2 JHS88_23705 PF04545 Sigma-70, region 4 JHS88_23710 PF03748 Flagellar basal body-associated protein FliL JHS88_23725 PF02561 Flagellar protein FliS JHS88_23730 PF07195 Flagellar hook-associated protein 2 C-terminus JHS88_23730 PF02465 Flagellar hook-associated protein 2 N-terminus JHS88_23730 PF07196 Flagellin hook IN motif JHS88_23740 PF00700 Bacterial flagellin C-terminal helical region JHS88_23740 PF00669 Bacterial flagellin N-terminal helical region JHS88_23750 PF00771 FHIPEP family JHS88_23755 PF01312 FlhB HrpN YscU SpaS Family JHS88_23760 PF01311 Bacterial export proteins, family 1 JHS88_23765 PF01313 Bacterial export proteins, family 3 JHS88_23770 PF00813 FliP family JHS88_23775 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JHS88_23790 PF00072 Response regulator receiver domain JHS88_23790 PF02954 Bacterial regulatory protein, Fis family JHS88_23790 PF00158 Sigma-54 interaction domain JHS88_23795 PF02049 Flagellar hook-basal body complex protein FliE JHS88_23800 PF01514 Secretory protein of YscJ/FliF family JHS88_23800 PF08345 Flagellar M-ring protein C-terminal JHS88_23805 PF01706 FliG C-terminal domain JHS88_23805 PF14842 FliG N-terminal domain JHS88_23805 PF14841 FliG middle domain JHS88_23815 PF18269 T3SS EscN ATPase C-terminal domain JHS88_23815 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JHS88_23830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_23830 PF03466 LysR substrate binding domain JHS88_23865 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JHS88_23870 PF03466 LysR substrate binding domain JHS88_23870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS88_23890 PF00072 Response regulator receiver domain JHS88_23890 PF00486 Transcriptional regulatory protein, C terminal JHS88_23895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS88_23895 PF08448 PAS fold JHS88_23895 PF00512 His Kinase A (phospho-acceptor) domain JHS88_23895 PF13426 PAS domain JHS88_23895 PF00072 Response regulator receiver domain JHS88_23900 PF00080 Copper/zinc superoxide dismutase (SODC) JHS88_23905 PF00266 Aminotransferase class-V JHS88_23910 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS88_23915 PF03707 Bacterial signalling protein N terminal repeat JHS88_23915 PF00990 Diguanylate cyclase, GGDEF domain JHS88_23915 PF00563 EAL domain JHS88_23920 PF00155 Aminotransferase class I and II JHS88_23925 PF00107 Zinc-binding dehydrogenase JHS88_23925 PF08240 Alcohol dehydrogenase GroES-like domain JHS88_23965 PF13401 AAA domain JHS88_23965 PF09077 Mu B transposition protein, C terminal JHS88_23990 PF04245 37-kD nucleoid-associated bacterial protein JHS88_24015 PF02810 SEC-C motif JHS88_24185 PF01555 DNA methylase JHS88_24230 PF00691 OmpA family JHS88_24280 PF01797 Transposase IS200 like JHS88_24295 PF14706 Transposase DNA-binding JHS88_24295 PF02281 Transposase Tn5 dimerisation domain JHS88_24295 PF01609 Transposase DDE domain JHS88_24380 PF00239 Resolvase, N terminal domain JHS88_24380 PF02796 Helix-turn-helix domain of resolvase JHS88_24410 PF13362 Toprim domain JHS88_24410 PF18818 Metallopeptidase superfamily domain JHS88_24410 PF08401 Domain of unknown function (DUF1738) JHS88_24420 PF03230 Antirestriction protein JHS88_24440 PF01131 DNA topoisomerase JHS88_24440 PF01751 Toprim domain JHS88_24490 PF01464 Transglycosylase SLT domain JHS88_24510 PF01848 Hok/gef family JHS88_24550 PF00437 Type II/IV secretion system protein JHS88_24580 PF03743 Bacterial conjugation TrbI-like protein JHS88_24590 PF03524 Conjugal transfer protein JHS88_24610 PF00437 Type II/IV secretion system protein JHS88_24620 PF03135 CagE, TrbE, VirB family, component of type IV transporter system JHS88_24625 PF05101 Type IV secretory pathway, VirB3-like protein JHS88_24630 PF04956 TrbC/VIRB2 family JHS88_24670 PF04754 Putative transposase, YhgA-like JHS88_24675 PF13614 AAA domain JHS88_24690 PF02796 Helix-turn-helix domain of resolvase JHS88_24690 PF00239 Resolvase, N terminal domain JHS88_24750 PF01751 Toprim domain JHS88_24750 PF01131 DNA topoisomerase JHS88_24790 PF07996 Type IV secretion system proteins JHS88_24795 PF04610 TrbL/VirB6 plasmid conjugal transfer protein JHS88_24875 PF01389 OmpA-like transmembrane domain JHS88_24875 PF00691 OmpA family JHS88_24880 PF11999 Protein of unknown function (DUF3494) JHS88_24880 PF02368 Bacterial Ig-like domain (group 2) JHS88_24905 PF01548 Transposase JHS88_24905 PF02371 Transposase IS116/IS110/IS902 family JHS88_24920 PF00155 Aminotransferase class I and II JHS88_24925 PF03553 Na+/H+ antiporter family JHS88_24930 PF00356 Bacterial regulatory proteins, lacI family JHS88_24945 PF02796 Helix-turn-helix domain of resolvase JHS88_24945 PF00239 Resolvase, N terminal domain JHS88_24955 PF02796 Helix-turn-helix domain of resolvase JHS88_24955 PF00239 Resolvase, N terminal domain JHS88_24975 PF13610 DDE domain JHS88_24985 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system JHS88_24990 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system JHS88_25000 PF01526 Tn3 transposase DDE domain JHS88_25000 PF13700 Domain of unknown function (DUF4158) JHS88_25005 PF00239 Resolvase, N terminal domain JHS88_25005 PF02796 Helix-turn-helix domain of resolvase JHS88_25060 PF01381 Helix-turn-helix JHS88_25080 PF04956 TrbC/VIRB2 family JHS88_25085 PF05101 Type IV secretory pathway, VirB3-like protein JHS88_25090 PF03135 CagE, TrbE, VirB family, component of type IV transporter system JHS88_25095 PF04335 VirB8 protein JHS88_25100 PF03524 Conjugal transfer protein JHS88_25115 PF13737 Transposase DDE domain JHS88_25120 PF13737 Transposase DDE domain JHS88_25125 PF03347 Vibrio thermostable direct hemolysin JHS88_25130 PF12833 Helix-turn-helix domain JHS88_25135 PF00005 ABC transporter JHS88_25140 PF00005 ABC transporter JHS88_25140 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS88_25145 PF12911 N-terminal TM domain of oligopeptide transport permease C JHS88_25145 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_25150 PF00528 Binding-protein-dependent transport system inner membrane component JHS88_25155 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JHS88_25160 PF01774 UreD urease accessory protein JHS88_25165 PF00547 Urease, gamma subunit JHS88_25170 PF00699 Urease beta subunit JHS88_25175 PF00449 Urease alpha-subunit, N-terminal domain JHS88_25175 PF01979 Amidohydrolase family JHS88_25180 PF02814 UreE urease accessory protein, N-terminal domain JHS88_25180 PF05194 UreE urease accessory protein, C-terminal domain JHS88_25185 PF01730 UreF JHS88_25190 PF02492 CobW/HypB/UreG, nucleotide-binding domain JHS88_25205 PF00239 Resolvase, N terminal domain JHS88_25205 PF02796 Helix-turn-helix domain of resolvase JHS88_25210 PF13700 Domain of unknown function (DUF4158) JHS88_25210 PF01526 Tn3 transposase DDE domain JHS88_25220 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system JHS88_25225 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system JHS88_25235 PF13610 DDE domain JHS88_25255 PF00239 Resolvase, N terminal domain JHS88_25255 PF02796 Helix-turn-helix domain of resolvase JHS88_25265 PF00239 Resolvase, N terminal domain JHS88_25265 PF02796 Helix-turn-helix domain of resolvase JHS88_25280 PF00356 Bacterial regulatory proteins, lacI family JHS88_25285 PF03553 Na+/H+ antiporter family JHS88_25290 PF00155 Aminotransferase class I and II JHS88_25305 PF02371 Transposase IS116/IS110/IS902 family JHS88_25305 PF01548 Transposase JHS88_25330 PF11999 Protein of unknown function (DUF3494) JHS88_25330 PF02368 Bacterial Ig-like domain (group 2) JHS88_25335 PF00691 OmpA family JHS88_25335 PF01389 OmpA-like transmembrane domain JHS88_25415 PF04610 TrbL/VirB6 plasmid conjugal transfer protein JHS88_25420 PF07996 Type IV secretion system proteins JHS88_25460 PF01131 DNA topoisomerase JHS88_25460 PF01751 Toprim domain JHS88_25470 PF02534 Type IV secretory system Conjugative DNA transfer JHS88_25480 PF00437 Type II/IV secretion system protein JHS88_25485 PF03743 Bacterial conjugation TrbI-like protein JHS88_25490 PF03524 Conjugal transfer protein JHS88_25495 PF04335 VirB8 protein JHS88_25500 PF03135 CagE, TrbE, VirB family, component of type IV transporter system JHS88_25505 PF05101 Type IV secretory pathway, VirB3-like protein JHS88_25510 PF04956 TrbC/VIRB2 family JHS88_25530 PF01381 Helix-turn-helix