locus-tag	class	description
JHS88_00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
JHS88_00010	COG0592	DNA-directed DNA polymerase activity
JHS88_00015	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
JHS88_00020	COG0187	DNA topoisomerase II activity
JHS88_00030	COG0071	Belongs to the small heat shock protein (HSP20) family
JHS88_00035	COG3977	Valine--pyruvate aminotransferase
JHS88_00040	COG0366	Alpha amylase catalytic
JHS88_00045	COG0751	glycine-tRNA ligase activity
JHS88_00050	COG0752	glycyl-tRNA synthetase alpha subunit
JHS88_00055	COG2119	membrane
JHS88_00065	COG0425	Belongs to the sulfur carrier protein TusA family
JHS88_00080	COG0604	alcohol dehydrogenase
JHS88_00085	COG0183	Belongs to the thiolase family
JHS88_00090	COG1250	3-hydroxyacyl-CoA dehydrogenase
JHS88_00090	COG1024	Enoyl-CoA hydratase
JHS88_00095	COG1739	Uncharacterized protein family UPF0029
JHS88_00100	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JHS88_00140	COG0583	DNA-binding transcription factor activity
JHS88_00145	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
JHS88_00150	COG2960	long-chain fatty acid transporting porin activity
JHS88_00155	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JHS88_00160	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JHS88_00210	COG4172	Belongs to the ABC transporter superfamily
JHS88_00215	COG0747	negative chemotaxis
JHS88_00220	COG0601	transmembrane transport
JHS88_00225	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JHS88_00260	COG1609	Transcriptional regulator
JHS88_00265	COG0583	DNA-binding transcription factor activity
JHS88_00280	COG0129	dihydroxy-acid dehydratase activity
JHS88_00285	COG3265	gluconokinase activity
JHS88_00290	COG2610	gluconate transmembrane transporter activity
JHS88_00295	COG0800	Aldolase
JHS88_00300	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
JHS88_00305	COG0583	DNA-binding transcription factor activity
JHS88_00310	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JHS88_00315	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
JHS88_00320	COG0339	signal peptide processing
JHS88_00325	COG1522	sequence-specific DNA binding
JHS88_00330	COG5001	Diguanylate cyclase
JHS88_00330	COG5002	protein histidine kinase activity
JHS88_00335	COG0742	ribosomal rna small subunit methyltransferase
JHS88_00350	COG0589	response to stress
JHS88_00355	COG1528	Iron-storage protein
JHS88_00365	COG2081	HI0933 family
JHS88_00375	COG2823	Periplasmic or secreted lipoprotein
JHS88_00395	COG1597	lipid kinase activity
JHS88_00425	COG0628	permease
JHS88_00440	COG1322	Protein conserved in bacteria
JHS88_00445	COG2226	methyltransferase
JHS88_00450	COG3165	ubiquinone biosynthetic process from chorismate
JHS88_00455	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
JHS88_00460	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
JHS88_00465	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
JHS88_00470	COG0805	protein transport
JHS88_00475	COG0084	hydrolase, TatD family'
JHS88_00495	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JHS88_00495	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JHS88_00500	COG0218	Necessary for normal cell division and for the maintenance of normal septation
JHS88_00530	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
JHS88_00540	COG2204	response regulator
JHS88_00545	COG3852	Histidine kinase
JHS88_00555	COG0174	glutamine synthetase
JHS88_00560	COG1217	gtp-binding protein TYPA
JHS88_00575	COG1295	ribonuclease BN
JHS88_00580	COG1490	D-aminoacyl-tRNA deacylase activity
JHS88_00585	COG0456	acetyltransferase
JHS88_00595	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
JHS88_00600	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
JHS88_00605	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
JHS88_00610	COG3031	protein transport across the cell outer membrane
JHS88_00620	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
JHS88_00625	COG1459	type II secretion system
JHS88_00630	COG2165	general secretion pathway protein
JHS88_00635	COG2165	general secretion pathway protein
JHS88_00640	COG2165	general secretion pathway protein
JHS88_00645	COG4795	General secretion pathway protein
JHS88_00650	COG3156	type II secretion system protein K
JHS88_00655	COG3297	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
JHS88_00660	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
JHS88_00670	COG1218	3'(2'),5'-bisphosphate nucleotidase
JHS88_00675	COG0494	nUDIX hydrolase
JHS88_00680	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
JHS88_00680	COG0316	Belongs to the HesB IscA family
JHS88_00685	COG1040	competence protein
JHS88_00690	COG0596	Alpha beta hydrolase
JHS88_00700	COG2183	response to ionizing radiation
JHS88_00710	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
JHS88_00730	COG2233	PERMEase
JHS88_00735	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
JHS88_00740	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JHS88_00745	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
JHS88_00750	COG1758	RNA polymerase activity
JHS88_00755	COG0194	GDP metabolic process
JHS88_00775	COG0848	biopolymer transport protein
JHS88_00780	COG0811	peptide transport
JHS88_00800	COG4174	ABC transporter (Permease)
JHS88_00810	COG0747	negative chemotaxis
JHS88_00815	COG0444	Belongs to the ABC transporter superfamily
JHS88_00820	COG4608	Belongs to the ABC transporter superfamily
JHS88_00830	COG1561	YicC-like family, N-terminal region
JHS88_00835	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
JHS88_00840	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
JHS88_00845	COG1560	Kdo2-lipid A biosynthetic process
JHS88_00850	COG1309	transcriptional regulator
JHS88_00855	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
JHS88_00860	COG0840	transmembrane signaling receptor activity
JHS88_00865	COG2003	Belongs to the UPF0758 family
JHS88_00870	COG0227	Belongs to the bacterial ribosomal protein bL28 family
JHS88_00880	COG2194	sulfuric ester hydrolase activity
JHS88_00890	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
JHS88_00895	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
JHS88_00910	COG0463	Glycosyl transferase, family 2
JHS88_00915	COG0859	PFAM glycosyl transferase family 9
JHS88_00920	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
JHS88_00925	COG3642	lipopolysaccharide core region biosynthetic process
JHS88_00935	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
JHS88_00940	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
JHS88_00945	COG2089	acid synthase
JHS88_00955	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
JHS88_00970	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
JHS88_00980	COG1028	Short-chain dehydrogenase reductase Sdr
JHS88_01000	COG1519	Transferase
JHS88_01005	COG0859	PFAM glycosyl transferase family 9
JHS88_01010	COG1560	Kdo2-lipid A biosynthetic process
JHS88_01020	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JHS88_01090	COG1442	glycosyl transferase family 8
JHS88_01105	COG0438	transferase activity, transferring glycosyl groups
JHS88_01110	COG0463	Glycosyl transferase, family 2
JHS88_01110	COG1216	Glycosyl transferase, family 2
JHS88_01115	COG0110	maltose O-acetyltransferase activity
JHS88_01135	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
JHS88_01150	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
JHS88_01155	COG0149	triose-phosphate isomerase activity
JHS88_01180	COG1494	fructose-1,6-bisphosphatase
JHS88_01185	COG3074	FtsZ-dependent cytokinesis
JHS88_01190	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
JHS88_01195	COG1575	Belongs to the MenA family. Type 1 subfamily
JHS88_01200	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
JHS88_01205	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
JHS88_01215	COG1609	Transcriptional regulator
JHS88_01220	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
JHS88_01225	COG0254	rRNA binding
JHS88_01235	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
JHS88_01240	COG0088	Forms part of the polypeptide exit tunnel
JHS88_01250	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
JHS88_01255	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
JHS88_01260	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
JHS88_01265	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
JHS88_01275	COG0255	Belongs to the universal ribosomal protein uL29 family
JHS88_01280	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
JHS88_01285	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
JHS88_01290	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
JHS88_01295	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
JHS88_01300	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
JHS88_01305	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
JHS88_01310	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
JHS88_01325	COG1841	ribosomal large subunit assembly
JHS88_01330	COG0200	Binds to the 23S rRNA
JHS88_01335	COG0201	protein transport
JHS88_01340	COG0257	Belongs to the bacterial ribosomal protein bL36 family
JHS88_01345	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
JHS88_01350	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
JHS88_01360	COG0202	RNA polymerase activity
JHS88_01365	COG0203	ribosomal protein L17
JHS88_01375	COG0545	Peptidyl-prolyl cis-trans isomerase
JHS88_01385	COG2153	protein acetylation
JHS88_01390	COG0513	Belongs to the DEAD box helicase family
JHS88_01400	COG0737	Belongs to the 5'-nucleotidase family
JHS88_01405	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
JHS88_01405	COG1648	precorrin-2 dehydrogenase activity
JHS88_01410	COG0175	sulfate reduction
JHS88_01415	COG2895	sulfate adenylyltransferase (ATP) activity
JHS88_01420	COG0471	metal ion transport
JHS88_01420	COG3273	potassium ion transport
JHS88_01425	COG0529	Catalyzes the synthesis of activated sulfate
JHS88_01445	COG4181	ATPase activity
JHS88_01460	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
JHS88_01470	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JHS88_01475	COG0729	surface antigen
JHS88_01485	COG2105	PFAM AIG2 family protein
JHS88_01495	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
JHS88_01500	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
JHS88_01505	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
JHS88_01510	COG0163	prenyltransferase activity
JHS88_01515	COG4143	(ABC) transporter
JHS88_01520	COG1178	ABC-type Fe3 transport system permease component
JHS88_01525	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
JHS88_01540	COG2358	TRAP transporter, solute receptor (TAXI family
JHS88_01550	COG0039	L-malate dehydrogenase activity
JHS88_01560	COG0142	geranyltranstransferase activity
JHS88_01565	COG0261	This protein binds to 23S rRNA in the presence of protein L20
JHS88_01575	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
JHS88_01580	COG2966	Psort location CytoplasmicMembrane, score
JHS88_01595	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
JHS88_01600	COG2967	ApaG domain
JHS88_01605	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
JHS88_01610	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
JHS88_01615	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JHS88_01625	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
JHS88_01635	COG0066	3-isopropylmalate dehydratase activity
JHS88_01670	COG0583	DNA-binding transcription factor activity
JHS88_01675	COG1022	Amp-dependent synthetase and ligase
JHS88_01680	COG0028	Belongs to the TPP enzyme family
JHS88_01685	COG0440	acetolactate synthase activity
JHS88_01700	COG0469	pyruvate kinase activity
JHS88_01705	COG1349	DNA-binding transcription factor activity
JHS88_01710	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
JHS88_01725	COG5002	protein histidine kinase activity
JHS88_01730	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JHS88_01735	COG3722	fumarate hydratase activity
JHS88_01740	COG0246	Mannitol dehydrogenase
JHS88_01745	COG2213	PTS system mannitol-specific
JHS88_01745	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
JHS88_01775	COG1464	Belongs to the NlpA lipoprotein family
JHS88_01815	COG0732	type I restriction modification DNA specificity domain
JHS88_01875	COG3550	peptidyl-serine autophosphorylation
JHS88_01895	COG0358	DNA primase activity
JHS88_01900	COG1610	YqeY-like protein
JHS88_01905	COG0828	Belongs to the bacterial ribosomal protein bS21 family
JHS88_01910	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
JHS88_01915	COG0596	Alpha beta hydrolase
JHS88_01920	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
JHS88_01925	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
JHS88_01930	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
JHS88_01935	COG1968	undecaprenyl-diphosphatase activity
JHS88_01940	COG0617	tRNA 3'-terminal CCA addition
JHS88_01945	COG3267	Type II secretory pathway component ExeA
JHS88_01945	COG3409	Peptidoglycan-binding domain 1 protein
JHS88_01955	COG4991	sh3 domain protein
JHS88_01960	COG0306	phosphate transporter
JHS88_01965	COG1392	Phosphate transport regulator
JHS88_01970	COG3025	triphosphatase activity
JHS88_01985	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
JHS88_01990	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
JHS88_01990	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
JHS88_01995	COG1538	Outer membrane efflux protein
JHS88_02000	COG0494	nUDIX hydrolase
JHS88_02005	COG3151	Protein conserved in bacteria
JHS88_02015	COG3150	esterase
JHS88_02025	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
JHS88_02030	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JHS88_02040	COG3105	Protein conserved in bacteria
JHS88_02045	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
JHS88_02050	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
JHS88_02055	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
JHS88_02060	COG0723	plastoquinol--plastocyanin reductase activity
JHS88_02065	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
JHS88_02070	COG2857	Cytochrome c1
JHS88_02075	COG0625	glutathione transferase activity
JHS88_02080	COG2969	positive regulation of protein catabolic process
JHS88_02085	COG2823	Periplasmic or secreted lipoprotein
JHS88_02090	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
JHS88_02095	COG0792	nuclease activity
JHS88_02105	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
JHS88_02115	COG0275	rRNA processing
JHS88_02120	COG3116	cell division
JHS88_02125	COG0768	penicillin binding
JHS88_02130	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
JHS88_02135	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
JHS88_02140	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
JHS88_02145	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
JHS88_02150	COG0772	Belongs to the SEDS family
JHS88_02155	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
JHS88_02160	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
JHS88_02165	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
JHS88_02170	COG0849	cell division
JHS88_02175	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
JHS88_02180	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
JHS88_02190	COG0653	protein targeting
JHS88_02195	COG0494	nUDIX hydrolase
JHS88_02200	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
JHS88_02205	COG0505	Belongs to the CarA family
JHS88_02210	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
JHS88_02225	COG0730	response to heat
JHS88_02230	COG0583	DNA-binding transcription factor activity
JHS88_02235	COG2860	membrane
JHS88_02240	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JHS88_02250	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
JHS88_02260	COG0493	'glutamate synthase
JHS88_02265	COG0067	glutamate synthase
JHS88_02265	COG0069	glutamate synthase activity
JHS88_02265	COG0070	glutamate synthase
JHS88_02275	COG0067	glutamate synthase
JHS88_02275	COG0069	glutamate synthase activity
JHS88_02275	COG0070	glutamate synthase
JHS88_02280	COG1242	4 iron, 4 sulfur cluster binding
JHS88_02285	COG4251	negative regulation of phosphorylation
JHS88_02285	COG2203	Gaf domain
JHS88_02285	COG5001	Diguanylate cyclase
JHS88_02285	COG3706	GGDEF domain
JHS88_02290	COG5002	protein histidine kinase activity
JHS88_02290	COG2198	Histidine kinase
JHS88_02290	COG0784	Response regulator, receiver
JHS88_02300	COG0745	RESPONSE REGULATOR receiver
JHS88_02310	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
JHS88_02325	COG0083	homoserine kinase activity
JHS88_02330	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
JHS88_02335	COG3445	Acts as a radical domain for damaged PFL and possibly other radical proteins
JHS88_02340	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
JHS88_02345	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
JHS88_02360	COG1115	amino acid carrier protein
JHS88_02365	COG3022	response to hydroperoxide
JHS88_02370	COG0513	Belongs to the DEAD box helicase family
JHS88_02375	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
JHS88_02385	COG0716	FMN binding
JHS88_02390	COG4974	Belongs to the 'phage' integrase family
JHS88_02395	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
JHS88_02400	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
JHS88_02410	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
JHS88_02425	COG0667	Aldo Keto reductase
JHS88_02435	COG3066	DNA modification
JHS88_02440	COG0494	nUDIX hydrolase
JHS88_02445	COG3605	phosphoenolpyruvate-protein phosphotransferase activity
JHS88_02450	COG0730	response to heat
JHS88_02455	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
JHS88_02460	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
JHS88_02470	COG1283	sodium-dependent phosphate transmembrane transporter activity
JHS88_02475	COG0583	DNA-binding transcription factor activity
JHS88_02480	COG0640	Transcriptional regulator
JHS88_02485	COG0268	Binds directly to 16S ribosomal RNA
JHS88_02490	COG0728	peptidoglycan biosynthetic process
JHS88_02495	COG0196	riboflavin kinase activity
JHS88_02500	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
JHS88_02505	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
JHS88_02510	COG1047	Peptidyl-prolyl cis-trans
JHS88_02515	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
JHS88_02520	COG3279	Response regulator of the LytR AlgR family
JHS88_02525	COG3275	phosphorelay sensor kinase activity
JHS88_02530	COG1966	Carbon starvation protein
JHS88_02545	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
JHS88_02550	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
JHS88_02555	COG1472	Belongs to the glycosyl hydrolase 3 family
JHS88_02560	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
JHS88_02565	COG0287	Prephenate dehydrogenase
JHS88_02565	COG1605	Chorismate mutase
JHS88_02570	COG0739	heme binding
JHS88_02580	COG0488	(ABC) transporter
JHS88_02590	COG2973	This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region
JHS88_02595	COG1986	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions
JHS88_02600	COG1605	Chorismate mutase
JHS88_02600	COG0077	Prephenate dehydratase
JHS88_02605	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
JHS88_02610	COG0741	lytic transglycosylase activity
JHS88_02615	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JHS88_02620	COG0564	pseudouridine synthase activity
JHS88_02630	COG0542	response to heat
JHS88_02685	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
JHS88_02690	COG0826	peptidase U32
JHS88_02695	COG2974	May be involved in recombination
JHS88_02700	COG0745	RESPONSE REGULATOR receiver
JHS88_02705	COG5002	protein histidine kinase activity
JHS88_02715	COG0248	Ppx GppA phosphatase
JHS88_02720	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
JHS88_02730	COG0581	inorganic phosphate transmembrane transporter activity
JHS88_02735	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
JHS88_02740	COG0704	Plays a role in the regulation of phosphate uptake
JHS88_02750	COG3142	Participates in the control of copper homeostasis
JHS88_02755	COG0450	alkyl hydroperoxide reductase
JHS88_02760	COG0583	DNA-binding transcription factor activity
JHS88_02765	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
JHS88_02775	COG0517	IMP dehydrogenase activity
JHS88_02785	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
JHS88_02790	COG0343	queuine tRNA-ribosyltransferase activity
JHS88_02795	COG1862	Preprotein translocase
JHS88_02800	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JHS88_02805	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JHS88_02810	COG0483	inositol monophosphate 1-phosphatase activity
JHS88_02820	COG1959	2 iron, 2 sulfur cluster binding
JHS88_02825	COG1104	cysteine desulfurase activity
JHS88_02830	COG0822	iron-sulfur transferase activity
JHS88_02840	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
JHS88_02845	COG0443	Heat shock 70 kDa protein
JHS88_02850	COG0633	Ferredoxin
JHS88_02855	COG2975	iron-sulfur cluster assembly
JHS88_02860	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
JHS88_02865	COG0105	UTP biosynthetic process
JHS88_02870	COG0820	rRNA (adenine-C2-)-methyltransferase activity
JHS88_02880	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
JHS88_02885	COG0124	histidyl-tRNA synthetase
JHS88_02890	COG2976	Protein conserved in bacteria
JHS88_02895	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JHS88_02900	COG1160	GTP binding
JHS88_02915	COG1570	exodeoxyribonuclease VII activity
JHS88_02920	COG0517	IMP dehydrogenase activity
JHS88_02920	COG0516	GMP reductase activity
JHS88_02925	COG0518	GMP synthase (glutamine-hydrolyzing) activity
JHS88_02925	COG0519	Catalyzes the synthesis of GMP from XMP
JHS88_02930	COG1757	Na H antiporter
JHS88_02940	COG1584	GPR1 FUN34 yaaH family protein
JHS88_02950	COG1115	amino acid carrier protein
JHS88_02980	COG2873	o-acetylhomoserine
JHS88_02985	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JHS88_03005	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JHS88_03005	COG3153	acetyltransferase
JHS88_03010	COG0583	DNA-binding transcription factor activity
JHS88_03055	COG0582	viral genome integration into host DNA
JHS88_03065	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
JHS88_03070	COG2867	negative regulation of translational initiation
JHS88_03075	COG2914	Belongs to the UPF0125 (RnfH) family
JHS88_03080	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JHS88_03085	COG0497	DNA recombination
JHS88_03095	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
JHS88_03100	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
JHS88_03110	COG0443	Heat shock 70 kDa protein
JHS88_03115	COG0484	heat shock protein binding
JHS88_03145	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
JHS88_03155	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
JHS88_03160	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
JHS88_03160	COG0047	phosphoribosylformylglycinamidine synthase activity
JHS88_03185	COG2195	Cleaves the N-terminal amino acid of tripeptides
JHS88_03190	COG2252	PERMEase
JHS88_03195	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
JHS88_03200	COG1073	alpha beta
JHS88_03210	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
JHS88_03215	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
JHS88_03220	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
JHS88_03225	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JHS88_03225	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JHS88_03245	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
JHS88_03250	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
JHS88_03255	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
JHS88_03260	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
JHS88_03265	COG0142	geranyltranstransferase activity
JHS88_03270	COG1722	exodeoxyribonuclease VII activity
JHS88_03275	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
JHS88_03280	COG2885	chlorophyll binding
JHS88_03285	COG0301	tRNA thio-modification
JHS88_03285	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JHS88_03290	COG0583	DNA-binding transcription factor activity
JHS88_03300	COG2363	Small membrane protein
JHS88_03305	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
JHS88_03315	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JHS88_03320	COG1611	Belongs to the LOG family
JHS88_03335	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
JHS88_03335	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
JHS88_03345	COG5595	Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310)
JHS88_03350	COG1464	Belongs to the NlpA lipoprotein family
JHS88_03355	COG2011	ABC-type metal ion transport system permease component
JHS88_03360	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
JHS88_03365	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
JHS88_03375	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JHS88_03375	COG1263	PTS System
JHS88_03380	COG0366	Alpha amylase catalytic
JHS88_03395	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JHS88_03400	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
JHS88_03405	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
JHS88_03410	COG0321	lipoyl(octanoyl) transferase activity
JHS88_03415	COG2921	Belongs to the UPF0250 family
JHS88_03420	COG1686	Belongs to the peptidase S11 family
JHS88_03425	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
JHS88_03430	COG0772	Belongs to the SEDS family
JHS88_03435	COG0768	penicillin binding
JHS88_03440	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
JHS88_03445	COG0799	negative regulation of ribosome biogenesis
JHS88_03450	COG1466	dna polymerase III delta subunit
JHS88_03455	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
JHS88_03460	COG0495	leucyl-tRNA aminoacylation
JHS88_03465	COG2888	peptidyl-tyrosine sulfation
JHS88_03470	COG0815	Transfers the fatty acyl group on membrane lipoproteins
JHS88_03475	COG4535	Mg2 and Co2 transporter CorC
JHS88_03480	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
JHS88_03485	COG1702	phosphate starvation-inducible protein PhoH
JHS88_03490	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
JHS88_03495	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JHS88_03610	COG0012	GTP binding
JHS88_03615	COG0193	aminoacyl-tRNA hydrolase activity
JHS88_03620	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
JHS88_03625	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
JHS88_03630	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
JHS88_03635	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
JHS88_03640	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
JHS88_03645	COG2890	protein-(glutamine-N5) methyltransferase activity
JHS88_03650	COG3094	Invasion gene expression up-regulator, SirB
JHS88_03655	COG2912	Transglutaminase-like superfamily
JHS88_03660	COG2877	3-deoxy-8-phosphooctulonate synthase activity
JHS88_03665	COG0737	Belongs to the 5'-nucleotidase family
JHS88_03675	COG1187	pseudouridine synthase activity
JHS88_03680	COG2840	Smr protein MutS2
JHS88_03715	COG2217	Heavy metal translocating P-type atpase
JHS88_03715	COG2608	mercury ion transmembrane transporter activity
JHS88_03725	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
JHS88_03730	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
JHS88_03780	COG0784	Response regulator, receiver
JHS88_03780	COG0835	chemotaxis
JHS88_03785	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
JHS88_03790	COG1815	bacterial-type flagellum-dependent cell motility
JHS88_03795	COG1558	bacterial-type flagellum-dependent cell motility
JHS88_03805	COG1749	Flagellar hook protein flgE
JHS88_03810	COG4787	bacterial-type flagellum-dependent cell motility
JHS88_03820	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
JHS88_03825	COG1706	bacterial-type flagellum-dependent cell motility
JHS88_03830	COG1705	Flagellar rod assembly protein muramidase FlgJ
JHS88_03830	COG3951	Flagellar rod assembly protein muramidase FlgJ
JHS88_03840	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JHS88_03845	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JHS88_03850	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JHS88_03855	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JHS88_03860	COG2190	(PTS) system
JHS88_03865	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
JHS88_03870	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JHS88_03875	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
JHS88_03880	COG2981	High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway
JHS88_03885	COG3115	cell septum assembly
JHS88_03890	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
JHS88_03910	COG0330	HflC and HflK could
JHS88_03915	COG3118	belongs to the thioredoxin family
JHS88_03920	COG0300	oxidoreductase activity
JHS88_03925	COG1090	epimerase
JHS88_03950	COG0622	Phosphoesterase
JHS88_03970	COG3710	Transcriptional regulator
JHS88_03975	COG0326	Molecular chaperone. Has ATPase activity
JHS88_03980	COG0563	adenylate kinase activity
JHS88_03985	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
JHS88_03990	COG3104	oligopeptide transport
JHS88_03995	COG0250	Participates in transcription elongation, termination and antitermination
JHS88_04000	COG0367	asparagine synthase
JHS88_04005	COG4651	solute:proton antiporter activity
JHS88_04005	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
JHS88_04010	COG1940	carbohydrate kinase activity
JHS88_04010	COG1846	Transcriptional regulator
JHS88_04015	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
JHS88_04020	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JHS88_04020	COG1263	PTS System
JHS88_04025	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
JHS88_04030	COG0735	belongs to the Fur family
JHS88_04050	COG0596	Alpha beta hydrolase
JHS88_04055	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
JHS88_04060	COG0033	Phosphoglucomutase
JHS88_04070	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
JHS88_04085	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
JHS88_04090	COG1053	succinate dehydrogenase
JHS88_04095	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
JHS88_04100	COG0567	Dehydrogenase, E1 component
JHS88_04105	COG0508	dehydrogenase complex catalyzes the overall conversion of
JHS88_04110	COG0045	succinate-CoA ligase (ADP-forming) activity
JHS88_04120	COG1108	ABC-type Mn2 Zn2 transport systems permease components
JHS88_04125	COG1121	(ABC) transporter
JHS88_04130	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
JHS88_04135	COG4977	sequence-specific DNA binding
JHS88_04140	COG1918	ferrous iron import across plasma membrane
JHS88_04160	COG0018	arginyl-trna synthetase
JHS88_04165	COG3102	Protein conserved in bacteria
JHS88_04170	COG0788	formyltetrahydrofolate deformylase activity
JHS88_04175	COG1199	ATP-dependent helicase activity
JHS88_04180	COG1214	PFAM Peptidase M22, glycoprotease
JHS88_04195	COG2267	carboxylic ester hydrolase activity
JHS88_04200	COG0318	PFAM AMP-dependent synthetase and ligase
JHS88_04205	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
JHS88_04210	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
JHS88_04215	COG2894	cell division
JHS88_04220	COG0850	regulation of cytokinetic process
JHS88_04225	COG3100	YcgL domain-containing protein
JHS88_04230	COG2951	lytic endotransglycosylase activity
JHS88_04235	COG0583	DNA-binding transcription factor activity
JHS88_04240	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JHS88_04245	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
JHS88_04265	COG1028	Short-chain dehydrogenase reductase Sdr
JHS88_04275	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JHS88_04300	COG2986	histidine ammonia-lyase
JHS88_04305	COG1216	Glycosyl transferase, family 2
JHS88_04310	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
JHS88_04325	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JHS88_04330	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JHS88_04365	COG1253	flavin adenine dinucleotide binding
JHS88_04370	COG0513	Belongs to the DEAD box helicase family
JHS88_04375	COG0569	domain protein
JHS88_04380	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JHS88_04395	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
JHS88_04400	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
JHS88_04405	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
JHS88_04410	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
JHS88_04420	COG2204	response regulator
JHS88_04435	COG0544	peptidyl-prolyl cis-trans isomerase activity
JHS88_04445	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
JHS88_04450	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
JHS88_04455	COG0776	regulation of translation
JHS88_04460	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JHS88_04465	COG1555	photosystem II stabilization
JHS88_04480	COG0232	Belongs to the dGTPase family. Type 2 subfamily
JHS88_04485	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
JHS88_04490	COG0436	Aminotransferase
JHS88_04495	COG1169	isochorismate synthase
JHS88_04500	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
JHS88_04505	COG0596	Alpha beta hydrolase
JHS88_04510	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
JHS88_04530	COG2855	membrane
JHS88_04535	COG0477	Major facilitator Superfamily
JHS88_04580	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JHS88_04585	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JHS88_04610	COG1522	sequence-specific DNA binding
JHS88_04620	COG1946	Acyl-CoA thioesterase
JHS88_04625	COG3126	Type III secretion system lipoprotein chaperone (YscW)
JHS88_04640	COG2199	diguanylate cyclase activity
JHS88_04650	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JHS88_04655	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
JHS88_04660	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
JHS88_04665	COG0516	GMP reductase activity
JHS88_04665	COG0517	IMP dehydrogenase activity
JHS88_04690	COG0537	adenosine 5'-monophosphoramidase activity
JHS88_04715	COG3150	esterase
JHS88_04720	COG1252	NADH dehydrogenase
JHS88_04735	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
JHS88_04745	COG4591	ABC-type transport system involved in lipoprotein release permease component
JHS88_04750	COG1136	(ABC) transporter
JHS88_04755	COG4591	ABC-type transport system involved in lipoprotein release permease component
JHS88_04765	COG0658	competence protein
JHS88_04765	COG2333	competence protein COMEC
JHS88_04770	COG1132	(ABC) transporter
JHS88_04775	COG1663	tetraacyldisaccharide 4'-kinase activity
JHS88_04785	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
JHS88_04790	COG2719	SpoVR family
JHS88_04795	COG2718	Belongs to the UPF0229 family
JHS88_04800	COG2766	serine protein kinase
JHS88_04805	COG3013	Belongs to the UPF0304 family
JHS88_04815	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
JHS88_04825	COG1882	Formate acetyltransferase
JHS88_04865	COG0708	Exodeoxyribonuclease III
JHS88_04875	COG3923	Primosomal replication protein n
JHS88_04880	COG0730	response to heat
JHS88_04885	COG1199	ATP-dependent helicase activity
JHS88_04895	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
JHS88_04900	COG1187	pseudouridine synthase activity
JHS88_04910	COG1278	Cold shock
JHS88_04915	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
JHS88_04920	COG0542	response to heat
JHS88_04930	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
JHS88_04935	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
JHS88_04940	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
JHS88_04950	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
JHS88_04960	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
JHS88_04965	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
JHS88_04970	COG0297	glycogen (starch) synthase activity
JHS88_04990	COG3070	regulator of competence-specific genes
JHS88_04995	COG1609	Transcriptional regulator
JHS88_05000	COG3381	protein complex oligomerization
JHS88_05005	COG0745	RESPONSE REGULATOR receiver
JHS88_05010	COG1434	Gram-negative-bacterium-type cell wall biogenesis
JHS88_05015	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
JHS88_05020	COG3006	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Not required for mini-F plasmid partitioning. Probably acts via its interaction with MukB and MukE. Overexpression results in anucleate cells. It has a calcium binding activity
JHS88_05025	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
JHS88_05030	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
JHS88_05050	COG0189	ligase activity
JHS88_05050	COG4067	protein conserved in archaea
JHS88_05055	COG0500	methyltransferase
JHS88_05060	COG4106	trans-aconitate 2-methyltransferase activity
JHS88_05065	COG1801	Protein of unknown function DUF72
JHS88_05070	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
JHS88_05075	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
JHS88_05080	COG0840	transmembrane signaling receptor activity
JHS88_05085	COG0632	four-way junction helicase activity
JHS88_05090	COG2255	four-way junction helicase activity
JHS88_05095	COG1271	oxidase subunit
JHS88_05100	COG1294	oxidase, subunit
JHS88_05105	COG4890	Cyd operon protein YbgT
JHS88_05115	COG0824	Thioesterase
JHS88_05120	COG0811	peptide transport
JHS88_05135	COG0823	Involved in the tonB-independent uptake of proteins
JHS88_05140	COG2885	chlorophyll binding
JHS88_05145	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
JHS88_05150	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
JHS88_05160	COG3766	membrane
JHS88_05170	COG0754	glutathionylspermidine amidase activity
JHS88_05180	COG5002	protein histidine kinase activity
JHS88_05180	COG0784	Response regulator, receiver
JHS88_05210	COG0556	nucleotide-excision repair
JHS88_05280	COG0840	transmembrane signaling receptor activity
JHS88_05285	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JHS88_05290	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JHS88_05315	COG3568	Endonuclease Exonuclease Phosphatase
JHS88_05330	COG0583	DNA-binding transcription factor activity
JHS88_05340	COG0686	Belongs to the AlaDH PNT family
JHS88_05350	COG1674	ftsk spoiiie
JHS88_05355	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
JHS88_05360	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
JHS88_05365	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
JHS88_05375	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
JHS88_05380	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JHS88_05385	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
JHS88_05390	COG0156	8-amino-7-oxononanoate synthase activity
JHS88_05400	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
JHS88_05410	COG0501	Belongs to the peptidase M48B family
JHS88_05420	COG0300	oxidoreductase activity
JHS88_05435	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
JHS88_05455	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
JHS88_05460	COG2915	High frequency lysogenization protein hflD homolog
JHS88_05465	COG0482	sulfurtransferase activity
JHS88_05475	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JHS88_05485	COG1757	Na H antiporter
JHS88_05500	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
JHS88_05505	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
JHS88_05510	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
JHS88_05515	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
JHS88_05515	COG0131	Imidazoleglycerol-phosphate dehydratase
JHS88_05520	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
JHS88_05525	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
JHS88_05530	COG0107	imidazoleglycerol-phosphate synthase activity
JHS88_05535	COG0140	phosphoribosyl-ATP diphosphatase activity
JHS88_05535	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
JHS88_05540	COG3012	SEC-C Motif Domain Protein
JHS88_05545	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
JHS88_05550	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
JHS88_05555	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
JHS88_05560	COG0215	cysteine-tRNA ligase activity
JHS88_05565	COG1435	thymidine kinase activity
JHS88_05570	COG1434	Gram-negative-bacterium-type cell wall biogenesis
JHS88_05595	COG2116	formate transmembrane transporter activity
JHS88_05605	COG0390	transport system, permease component
JHS88_05610	COG4459	periplasmic nitrate reductase
JHS88_05615	COG3005	denitrification pathway
JHS88_05620	COG0243	molybdopterin cofactor binding
JHS88_05635	COG1227	inorganic diphosphatase activity
JHS88_05645	COG4172	Belongs to the ABC transporter superfamily
JHS88_05655	COG4171	peptide transport system, permease
JHS88_05670	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
JHS88_05675	COG1842	Phage shock protein A
JHS88_05685	COG1983	PspC domain protein
JHS88_05690	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JHS88_05705	COG2818	Glycosylase
JHS88_05710	COG5380	lipid catabolic process
JHS88_05715	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
JHS88_05720	COG0626	cystathionine gamma-synthase activity
JHS88_05730	COG0733	neurotransmitter:sodium symporter activity
JHS88_05740	COG0564	pseudouridine synthase activity
JHS88_05750	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JHS88_05755	COG1151	hydroxylamine reductase activity
JHS88_05760	COG3604	Transcriptional regulator
JHS88_05770	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
JHS88_05775	COG4136	ATPase activity
JHS88_05780	COG4135	transport system, permease component
JHS88_05785	COG4134	Bacterial extracellular solute-binding protein
JHS88_05790	COG0398	Pfam SNARE associated Golgi protein
JHS88_05800	COG0493	'glutamate synthase
JHS88_05825	COG3313	Fe-S protein
JHS88_05850	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
JHS88_05870	COG1061	Type III restriction enzyme res subunit
JHS88_05875	COG1187	pseudouridine synthase activity
JHS88_05880	COG2814	Major facilitator Superfamily
JHS88_05915	COG3005	denitrification pathway
JHS88_05925	COG0534	Mate efflux family protein
JHS88_05930	COG4181	ATPase activity
JHS88_05945	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
JHS88_05960	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
JHS88_05965	COG3273	potassium ion transport
JHS88_05965	COG2985	domain, Protein
JHS88_05970	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
JHS88_05980	COG1737	Transcriptional regulator
JHS88_05985	COG0076	glutamate decarboxylase activity
JHS88_05995	COG2431	L-lysine efflux transmembrane transporter activity
JHS88_06005	COG3070	regulator of competence-specific genes
JHS88_06020	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JHS88_06020	COG4191	Histidine kinase
JHS88_06030	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
JHS88_06035	COG3048	D-serine ammonia-lyase activity
JHS88_06040	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
JHS88_06045	COG4988	ABC transporter
JHS88_06050	COG0492	ferredoxin-NADP+ reductase activity
JHS88_06075	COG0471	metal ion transport
JHS88_06080	COG2949	membrane
JHS88_06085	COG0281	malic enzyme
JHS88_06095	COG2829	1-acyl-2-lysophosphatidylserine acylhydrolase activity
JHS88_06110	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
JHS88_06145	COG0247	lactate metabolic process
JHS88_06145	COG0277	FAD linked oxidase domain protein
JHS88_06160	COG2986	histidine ammonia-lyase
JHS88_06165	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
JHS88_06170	COG0010	Belongs to the arginase family
JHS88_06175	COG1228	amidohydrolase
JHS88_06180	COG2188	Transcriptional regulator
JHS88_06195	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
JHS88_06205	COG0291	Belongs to the bacterial ribosomal protein bL35 family
JHS88_06215	COG0393	Putative heavy-metal-binding
JHS88_06245	COG3706	GGDEF domain
JHS88_06250	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
JHS88_06255	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JHS88_06255	COG0072	phenylalanine-tRNA ligase activity
JHS88_06265	COG0776	regulation of translation
JHS88_06275	COG0500	methyltransferase
JHS88_06280	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
JHS88_06285	COG0295	cytidine deaminase activity
JHS88_06290	COG1346	cytolysis
JHS88_06295	COG1380	Effector of murein hydrolase LrgA
JHS88_06300	COG2925	Exonuclease
JHS88_06305	COG1823	symporter activity
JHS88_06310	COG0702	epimerase
JHS88_06315	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
JHS88_06320	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
JHS88_06330	COG2062	phosphohistidine phosphatase, SixA
JHS88_06340	COG2988	succinylglutamate desuccinylase activity
JHS88_06345	COG4139	cobalamin transport
JHS88_06350	COG4138	Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system
JHS88_06370	COG0583	DNA-binding transcription factor activity
JHS88_06380	COG1451	nucleotide metabolic process
JHS88_06385	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
JHS88_06415	COG3938	Belongs to the proline racemase family
JHS88_06430	COG2423	ornithine cyclodeaminase activity
JHS88_06435	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JHS88_06440	COG3842	ATPase activity
JHS88_06445	COG1176	ABC-type spermidine putrescine transport system, permease component I
JHS88_06450	COG1177	transmembrane transport
JHS88_06460	COG3291	Pkd domain containing protein
JHS88_06475	COG0444	Belongs to the ABC transporter superfamily
JHS88_06480	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JHS88_06485	COG0601	transmembrane transport
JHS88_06495	COG2195	Cleaves the N-terminal amino acid of tripeptides
JHS88_06505	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
JHS88_06515	COG0625	glutathione transferase activity
JHS88_06555	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
JHS88_06560	COG1127	ABC transporter
JHS88_06575	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
JHS88_06575	COG3264	Mechanosensitive ion channel
JHS88_06605	COG0531	amino acid
JHS88_06615	COG0531	amino acid
JHS88_06635	COG0583	DNA-binding transcription factor activity
JHS88_06640	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JHS88_06675	COG0471	metal ion transport
JHS88_06680	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JHS88_06680	COG4191	Histidine kinase
JHS88_06690	COG3300	MHYT domain
JHS88_06690	COG5001	Diguanylate cyclase
JHS88_06700	COG1280	lysine exporter protein (LysE YggA)
JHS88_06705	COG1328	CTP reductase activity
JHS88_06710	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
JHS88_06720	COG0861	Integral membrane protein TerC family
JHS88_06725	COG0739	heme binding
JHS88_06750	COG2204	response regulator
JHS88_06765	COG3501	Rhs element vgr protein
JHS88_06790	COG0515	serine threonine protein kinase
JHS88_06825	COG1522	sequence-specific DNA binding
JHS88_06910	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
JHS88_06920	COG0814	amino acid
JHS88_06940	COG1132	(ABC) transporter
JHS88_06945	COG1132	(ABC) transporter
JHS88_06970	COG0443	Heat shock 70 kDa protein
JHS88_06975	COG0443	Heat shock 70 kDa protein
JHS88_06985	COG3706	GGDEF domain
JHS88_07015	COG0243	molybdopterin cofactor binding
JHS88_07020	COG0437	4 iron, 4 sulfur cluster binding
JHS88_07025	COG3302	dmso reductase anchor subunit
JHS88_07040	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
JHS88_07045	COG1643	Atp-dependent helicase
JHS88_07060	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
JHS88_07070	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
JHS88_07075	COG1215	transferase activity, transferring glycosyl groups
JHS88_07080	COG0438	transferase activity, transferring glycosyl groups
JHS88_07120	COG2204	response regulator
JHS88_07150	COG1793	dna ligase
JHS88_07160	COG0534	Mate efflux family protein
JHS88_07165	COG0307	riboflavin synthase, alpha
JHS88_07175	COG3001	Fructosamine kinase
JHS88_07180	COG2201	protein-glutamate methylesterase activity
JHS88_07185	COG3706	GGDEF domain
JHS88_07195	COG0791	NLP P60 protein
JHS88_07200	COG0840	transmembrane signaling receptor activity
JHS88_07235	COG3148	PFAM DTW domain containing protein
JHS88_07240	COG1940	carbohydrate kinase activity
JHS88_07255	COG0746	molybdenum cofactor guanylyltransferase activity
JHS88_07260	COG3842	ATPase activity
JHS88_07275	COG2204	response regulator
JHS88_07280	COG4191	Histidine kinase
JHS88_07285	COG0488	(ABC) transporter
JHS88_07290	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
JHS88_07310	COG3381	protein complex oligomerization
JHS88_07320	COG3383	formate dehydrogenase (NAD+) activity
JHS88_07320	COG0243	molybdopterin cofactor binding
JHS88_07325	COG0437	4 iron, 4 sulfur cluster binding
JHS88_07360	COG0004	ammonium transporteR
JHS88_07370	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
JHS88_07375	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
JHS88_07385	COG1177	transmembrane transport
JHS88_07395	COG3842	ATPase activity
JHS88_07415	COG0037	tRNA processing
JHS88_07420	COG0589	response to stress
JHS88_07425	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JHS88_07440	COG2217	Heavy metal translocating P-type atpase
JHS88_07450	COG2010	Cytochrome c
JHS88_07465	COG3278	Belongs to the heme-copper respiratory oxidase family
JHS88_07480	COG2205	protein histidine kinase activity
JHS88_07480	COG0784	Response regulator, receiver
JHS88_07550	COG3120	sequence-specific DNA binding
JHS88_07555	COG1067	ATP-dependent peptidase activity
JHS88_07560	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
JHS88_07575	COG0488	(ABC) transporter
JHS88_07585	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
JHS88_07585	COG0116	Belongs to the methyltransferase superfamily
JHS88_07595	COG0167	dihydroorotate dehydrogenase activity
JHS88_07600	COG2902	Dehydrogenase
JHS88_07610	COG0308	aminopeptidase N
JHS88_07625	COG3109	RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities
JHS88_07630	COG1956	GAF domain-containing protein
JHS88_07635	COG1132	(ABC) transporter
JHS88_07640	COG2995	paraquat-inducible protein a
JHS88_07645	COG3008	intermembrane lipid transfer
JHS88_07650	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
JHS88_07650	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
JHS88_07670	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
JHS88_07675	COG1666	GTP binding
JHS88_07685	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JHS88_07690	COG4597	amino acid ABC transporter
JHS88_07695	COG0765	amino acid transport
JHS88_07700	COG1126	abc transporter atp-binding protein
JHS88_07705	COG0670	Belongs to the BI1 family
JHS88_07715	COG2920	part of a sulfur-relay system
JHS88_07720	COG1254	Belongs to the acylphosphatase family
JHS88_07725	COG0840	transmembrane signaling receptor activity
JHS88_07730	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
JHS88_07770	COG3706	GGDEF domain
JHS88_07775	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
JHS88_07780	COG0602	queuosine metabolic process
JHS88_07785	COG0561	phosphatase activity
JHS88_07810	COG2828	Protein conserved in bacteria
JHS88_07820	COG0372	Belongs to the citrate synthase family
JHS88_07825	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
JHS88_07855	COG0730	response to heat
JHS88_07875	COG0457	Tetratricopeptide repeat
JHS88_07945	COG4790	Type iii secretion
JHS88_07950	COG4794	Type iii secretion
JHS88_07955	COG4791	protein targeting
JHS88_07960	COG4792	protein secretion
JHS88_08010	COG3177	Filamentation induced by cAMP protein fic
JHS88_08030	COG4669	(LipO)protein
JHS88_08100	COG1012	belongs to the aldehyde dehydrogenase family
JHS88_08105	COG3284	Transcriptional regulator
JHS88_08130	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
JHS88_08135	COG0363	glucosamine-6-phosphate deaminase activity
JHS88_08140	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
JHS88_08145	COG4565	transcriptional regulatory protein
JHS88_08150	COG3290	protein histidine kinase activity
JHS88_08165	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JHS88_08180	COG1858	cytochrome C peroxidase
JHS88_08185	COG0527	aspartate kinase activity
JHS88_08190	COG0662	Cupin 2, conserved barrel domain protein
JHS88_08195	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
JHS88_08200	COG0456	acetyltransferase
JHS88_08205	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
JHS88_08225	COG4176	ABC-type proline glycine betaine transport system permease component
JHS88_08230	COG2113	Glycine betaine
JHS88_08250	COG1028	Short-chain dehydrogenase reductase Sdr
JHS88_08260	COG0745	RESPONSE REGULATOR receiver
JHS88_08265	COG0642	Histidine kinase
JHS88_08270	COG1368	sulfuric ester hydrolase activity
JHS88_08295	COG1115	amino acid carrier protein
JHS88_08305	COG1280	lysine exporter protein (LysE YggA)
JHS88_08310	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
JHS88_08315	COG1560	Kdo2-lipid A biosynthetic process
JHS88_08320	COG0531	amino acid
JHS88_08330	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
JHS88_08335	COG3063	Type IV pilus biogenesis stability protein PilW
JHS88_08365	COG0110	maltose O-acetyltransferase activity
JHS88_08385	COG2315	Protein conserved in bacteria
JHS88_08390	COG1846	Transcriptional regulator
JHS88_08405	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
JHS88_08415	COG2200	EAL domain
JHS88_08415	COG2771	luxR family
JHS88_08420	COG1227	inorganic diphosphatase activity
JHS88_08425	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
JHS88_08430	COG1012	belongs to the aldehyde dehydrogenase family
JHS88_08435	COG2957	Belongs to the agmatine deiminase family
JHS88_08445	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JHS88_08450	COG1012	belongs to the aldehyde dehydrogenase family
JHS88_08455	COG1917	Cupin 2, conserved barrel domain protein
JHS88_08455	COG1396	sequence-specific DNA binding
JHS88_08460	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
JHS88_08465	COG0174	glutamine synthetase
JHS88_08470	COG1757	Na H antiporter
JHS88_08535	COG4115	mRNA cleavage
JHS88_08540	COG2161	toxin-antitoxin pair type II binding
JHS88_08650	COG4735	regulation of single-species biofilm formation
JHS88_08660	COG2732	(Barnase) inhibitor
JHS88_08695	COG1335	isochorismatase
JHS88_08760	COG0653	protein targeting
JHS88_08860	COG0582	viral genome integration into host DNA
JHS88_08955	COG1683	Conserved Protein
JHS88_09005	COG0189	ligase activity
JHS88_09025	COG1403	HNH endonuclease
JHS88_09195	COG0456	acetyltransferase
JHS88_09240	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JHS88_09250	COG3768	UPF0283 membrane protein
JHS88_09255	COG3106	COG3106 Predicted ATPase
JHS88_09270	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
JHS88_09275	COG0784	Response regulator, receiver
JHS88_09275	COG2205	protein histidine kinase activity
JHS88_09285	COG0494	nUDIX hydrolase
JHS88_09290	COG0814	amino acid
JHS88_09295	COG1760	l-serine dehydratase
JHS88_09300	COG2200	EAL domain
JHS88_09310	COG0720	synthase
JHS88_09315	COG0840	transmembrane signaling receptor activity
JHS88_09320	COG0017	Asparaginyl-tRNA synthetase
JHS88_09330	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JHS88_09345	COG1448	Aminotransferase
JHS88_09365	COG0840	transmembrane signaling receptor activity
JHS88_09370	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
JHS88_09375	COG1846	Transcriptional regulator
JHS88_09400	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
JHS88_09415	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JHS88_09420	COG3108	Peptidase M15
JHS88_09425	COG2989	Protein conserved in bacteria
JHS88_09450	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
JHS88_09460	COG4235	cytochrome complex assembly
JHS88_09460	COG3088	subunit of a heme lyase
JHS88_09470	COG1138	Cytochrome C-type biogenesis protein
JHS88_09475	COG3301	Polysulphide reductase, NrfD
JHS88_09480	COG0437	4 iron, 4 sulfur cluster binding
JHS88_09490	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
JHS88_09510	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
JHS88_09515	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JHS88_09520	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JHS88_09545	COG0019	diaminopimelate decarboxylase activity
JHS88_09585	COG0322	excinuclease ABC activity
JHS88_09590	COG2197	response regulator
JHS88_09595	COG0417	DNA replication proofreading
JHS88_09605	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
JHS88_09610	COG3099	Belongs to the UPF0263 family
JHS88_09615	COG1187	pseudouridine synthase activity
JHS88_09625	COG0009	L-threonylcarbamoyladenylate synthase
JHS88_09630	COG0613	PHP domain protein
JHS88_09640	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
JHS88_09645	COG0512	Glutamine amidotransferase of anthranilate synthase
JHS88_09650	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
JHS88_09655	COG0135	phosphoribosylanthranilate isomerase activity
JHS88_09655	COG0134	indole-3-glycerol-phosphate synthase activity
JHS88_09660	COG0133	tryptophan synthase activity
JHS88_09665	COG0159	tryptophan synthase activity
JHS88_09670	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JHS88_09675	COG0318	PFAM AMP-dependent synthetase and ligase
JHS88_09680	COG1301	dicarboxylic acid transport
JHS88_09700	COG2917	probably involved in intracellular septation
JHS88_09710	COG2350	Protein conserved in bacteria
JHS88_09720	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
JHS88_09725	COG0583	DNA-binding transcription factor activity
JHS88_09740	COG2203	Gaf domain
JHS88_09740	COG3706	GGDEF domain
JHS88_09740	COG4251	negative regulation of phosphorylation
JHS88_09740	COG5001	Diguanylate cyclase
JHS88_09745	COG1032	radical SAM domain protein
JHS88_09750	COG0840	transmembrane signaling receptor activity
JHS88_09755	COG0745	RESPONSE REGULATOR receiver
JHS88_09760	COG3850	Histidine kinase
JHS88_09760	COG5002	protein histidine kinase activity
JHS88_09810	COG1335	isochorismatase
JHS88_09815	COG0577	efflux transmembrane transporter activity
JHS88_09815	COG1136	(ABC) transporter
JHS88_09820	COG1136	(ABC) transporter
JHS88_09820	COG0577	efflux transmembrane transporter activity
JHS88_09825	COG1136	(ABC) transporter
JHS88_09825	COG0577	efflux transmembrane transporter activity
JHS88_09835	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JHS88_09855	COG3118	belongs to the thioredoxin family
JHS88_09860	COG4232	protein-disulfide reductase activity
JHS88_09900	COG2863	cytochrome
JHS88_09905	COG3258	Cytochrome c
JHS88_09910	COG2995	paraquat-inducible protein a
JHS88_09915	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
JHS88_09915	COG3008	intermembrane lipid transfer
JHS88_09925	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
JHS88_09950	COG4166	transmembrane transport
JHS88_09955	COG0284	orotidine-5'-phosphate decarboxylase activity
JHS88_09960	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
JHS88_09965	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
JHS88_09975	COG0539	negative regulation of cytoplasmic translation
JHS88_09980	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
JHS88_09985	COG0616	signal peptide processing
JHS88_09990	COG1028	Short-chain dehydrogenase reductase Sdr
JHS88_10005	COG0587	DNA-directed DNA polymerase activity
JHS88_10010	COG0784	Response regulator, receiver
JHS88_10010	COG0835	chemotaxis
JHS88_10015	COG1940	carbohydrate kinase activity
JHS88_10020	COG0469	pyruvate kinase activity
JHS88_10025	COG4667	esterase of the alpha-beta hydrolase superfamily
JHS88_10040	COG0733	neurotransmitter:sodium symporter activity
JHS88_10055	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JHS88_10055	COG1263	PTS System
JHS88_10060	COG0084	hydrolase, TatD family'
JHS88_10070	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
JHS88_10075	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
JHS88_10105	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JHS88_10110	COG0416	fatty acid biosynthetic process
JHS88_10120	COG1399	metal-binding, possibly nucleic acid-binding protein
JHS88_10125	COG0424	maF-like protein
JHS88_10130	COG0564	pseudouridine synthase activity
JHS88_10135	COG1530	ribonuclease E activity
JHS88_10140	COG0659	secondary active sulfate transmembrane transporter activity
JHS88_10145	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
JHS88_10150	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
JHS88_10160	COG0572	uridine kinase
JHS88_10165	COG0489	protein tyrosine kinase activity
JHS88_10170	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JHS88_10170	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JHS88_10180	COG2186	Transcriptional regulator
JHS88_10185	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
JHS88_10190	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
JHS88_10195	COG0653	protein targeting
JHS88_10200	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JHS88_10210	COG0366	Alpha amylase catalytic
JHS88_10215	COG1122	ATPase activity
JHS88_10220	COG4120	Belongs to the binding-protein-dependent transport system permease family
JHS88_10230	COG3092	negative regulation of chromosome organization
JHS88_10235	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
JHS88_10240	COG0280	phosphate acetyltransferase
JHS88_10240	COG0857	belongs to the CobB CobQ family
JHS88_10245	COG3174	membrane
JHS88_10255	COG0435	Glutathione S-transferase
JHS88_10265	COG0444	Belongs to the ABC transporter superfamily
JHS88_10270	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JHS88_10275	COG0601	transmembrane transport
JHS88_10285	COG0314	molybdopterin synthase activity
JHS88_10290	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
JHS88_10295	COG0315	cyclic pyranopterin monophosphate synthase activity
JHS88_10300	COG0521	Mo-molybdopterin cofactor biosynthetic process
JHS88_10305	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
JHS88_10310	COG0391	Required for morphogenesis under gluconeogenic growth conditions
JHS88_10315	COG2198	Histidine kinase
JHS88_10320	COG2204	response regulator
JHS88_10325	COG0556	nucleotide-excision repair
JHS88_10335	COG4657	Part of a membrane complex involved in electron transport
JHS88_10340	COG2878	Part of a membrane complex involved in electron transport
JHS88_10345	COG4656	Part of a membrane complex involved in electron transport
JHS88_10350	COG4658	electron transport chain
JHS88_10355	COG4659	FMN binding
JHS88_10360	COG4660	Part of a membrane complex involved in electron transport
JHS88_10365	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
JHS88_10370	COG0346	lactoylglutathione lyase activity
JHS88_10380	COG2885	chlorophyll binding
JHS88_10385	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JHS88_10390	COG2056	Na+-H+ antiporter family
JHS88_10410	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
JHS88_10475	COG1403	HNH endonuclease
JHS88_10505	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
JHS88_10525	COG1012	belongs to the aldehyde dehydrogenase family
JHS88_10525	COG1454	alcohol dehydrogenase
JHS88_10530	COG2095	MarC family integral membrane protein
JHS88_10535	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JHS88_10540	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
JHS88_10545	COG1757	Na H antiporter
JHS88_10560	COG3081	Nucleoid-associated protein
JHS88_10565	COG3082	Protein of unknown function (DUF1414)
JHS88_10570	COG3083	sulfuric ester hydrolase activity
JHS88_10580	COG0123	including yeast histone deacetylase and acetoin utilization protein
JHS88_10595	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
JHS88_10600	COG0778	Nitroreductase
JHS88_10605	COG1902	pentaerythritol trinitrate reductase activity
JHS88_10605	COG0446	pyridine nucleotide-disulphide oxidoreductase
JHS88_10610	COG0616	signal peptide processing
JHS88_10615	COG0252	asparaginase activity
JHS88_10620	COG3139	Protein of unknown function (DUF1315)
JHS88_10630	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JHS88_10635	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
JHS88_10650	COG2226	methyltransferase
JHS88_10665	COG1785	Belongs to the alkaline phosphatase family
JHS88_10675	COG0346	lactoylglutathione lyase activity
JHS88_10680	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
JHS88_10685	COG0668	transmembrane transport
JHS88_10690	COG2983	Belongs to the UPF0260 family
JHS88_10695	COG2261	transglycosylase associated protein
JHS88_10710	COG3681	Belongs to the UPF0597 family
JHS88_10715	COG0251	oxidation-reduction process
JHS88_10720	COG0814	amino acid
JHS88_10725	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
JHS88_10730	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
JHS88_10735	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
JHS88_10745	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
JHS88_10750	COG2832	Protein of unknown function (DUF454)
JHS88_10755	COG0745	RESPONSE REGULATOR receiver
JHS88_10760	COG0583	DNA-binding transcription factor activity
JHS88_10765	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
JHS88_10770	COG1286	toxin biosynthetic process
JHS88_10775	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
JHS88_10780	COG0285	dihydrofolate synthase activity
JHS88_10785	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
JHS88_10790	COG0101	tRNA pseudouridine synthase activity
JHS88_10800	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
JHS88_10805	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JHS88_10810	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JHS88_10815	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JHS88_10815	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
JHS88_10820	COG0431	NADPH-dependent FMN reductase
JHS88_10830	COG3101	peptidyl-lysine hydroxylation
JHS88_10835	COG2860	membrane
JHS88_10840	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
JHS88_10845	COG2890	protein-(glutamine-N5) methyltransferase activity
JHS88_10850	COG2840	Smr protein MutS2
JHS88_10855	COG2062	phosphohistidine phosphatase, SixA
JHS88_10870	COG1024	Enoyl-CoA hydratase
JHS88_10870	COG1250	3-hydroxyacyl-CoA dehydrogenase
JHS88_10875	COG0183	Belongs to the thiolase family
JHS88_10895	COG2067	long-chain fatty acid transport protein
JHS88_10900	COG2853	Lipoprotein
JHS88_10915	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JHS88_10920	COG1138	Cytochrome C-type biogenesis protein
JHS88_10925	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
JHS88_10930	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JHS88_10935	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JHS88_10940	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JHS88_10945	COG4133	protoheme IX ABC transporter activity
JHS88_10955	COG0835	chemotaxis
JHS88_10965	COG1192	Involved in chromosome partitioning
JHS88_10970	COG2201	protein-glutamate methylesterase activity
JHS88_10975	COG0784	Response regulator, receiver
JHS88_10975	COG2198	Histidine kinase
JHS88_10975	COG0643	Histidine kinase
JHS88_10980	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
JHS88_11020	COG1987	bacterial-type flagellum assembly
JHS88_11070	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
JHS88_11080	COG1677	Flagellar hook-basal body complex protein FliE
JHS88_11100	COG1516	flagellar protein fliS
JHS88_11110	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
JHS88_11115	COG1334	flagellar protein FlaG
JHS88_11120	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JHS88_11125	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JHS88_11130	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JHS88_11135	COG2837	iron assimilation
JHS88_11160	COG1393	Belongs to the ArsC family
JHS88_11165	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JHS88_11180	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
JHS88_11185	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JHS88_11190	COG2716	regulation of RNA biosynthetic process
JHS88_11195	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
JHS88_11210	COG4783	chaperone-mediated protein folding
JHS88_11215	COG1393	Belongs to the ArsC family
JHS88_11235	COG2233	PERMEase
JHS88_11240	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
JHS88_11245	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
JHS88_11250	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
JHS88_11255	COG0121	glutamine amidotransferase
JHS88_11260	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
JHS88_11265	COG1960	acyl-CoA dehydrogenase activity
JHS88_11275	COG0456	acetyltransferase
JHS88_11295	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JHS88_11300	COG0328	RNA-DNA hybrid ribonuclease activity
JHS88_11305	COG2226	methyltransferase
JHS88_11310	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JHS88_11315	COG0741	lytic transglycosylase activity
JHS88_11315	COG1388	LysM domain
JHS88_11325	COG3021	interspecies interaction between organisms
JHS88_11330	COG0347	Belongs to the P(II) protein family
JHS88_11340	COG0037	tRNA processing
JHS88_11345	COG0825	malonyl-CoA metabolic process
JHS88_11350	COG0587	DNA-directed DNA polymerase activity
JHS88_11355	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
JHS88_11360	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
JHS88_11365	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
JHS88_11370	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
JHS88_11375	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
JHS88_11380	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
JHS88_11390	COG0750	zinc metalloprotease
JHS88_11395	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
JHS88_11400	COG0575	Belongs to the CDS family
JHS88_11405	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
JHS88_11410	COG0233	cytoplasmic translational termination
JHS88_11415	COG0528	UMP kinase activity
JHS88_11420	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
JHS88_11425	COG0052	Belongs to the universal ribosomal protein uS2 family
JHS88_11430	COG0024	Methionine aminopeptidase
JHS88_11435	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
JHS88_11445	COG0564	pseudouridine synthase activity
JHS88_11450	COG3098	single-species biofilm formation
JHS88_11475	COG1671	Belongs to the UPF0178 family
JHS88_11480	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
JHS88_11490	COG0254	rRNA binding
JHS88_11495	COG1720	tRNA m6t6A37 methyltransferase activity
JHS88_11500	COG0442	prolyl-tRNA aminoacylation
JHS88_11520	COG0733	neurotransmitter:sodium symporter activity
JHS88_11535	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
JHS88_11540	COG0514	ATP-dependent DNA helicase (RecQ)
JHS88_11545	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
JHS88_11550	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
JHS88_11570	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
JHS88_11575	COG0210	DNA helicase
JHS88_11635	COG1477	protein flavinylation
JHS88_11640	COG2871	sodium ion transport
JHS88_11645	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
JHS88_11650	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
JHS88_11655	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
JHS88_11660	COG1805	sodium ion transport
JHS88_11665	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
JHS88_11670	COG0271	Belongs to the BolA IbaG family
JHS88_11675	COG2813	Specifically methylates the guanine in position
JHS88_11680	COG3056	Lipoprotein
JHS88_11700	COG1595	DNA-templated transcription, initiation
JHS88_11720	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
JHS88_11725	COG0693	protein deglycase activity
JHS88_11730	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
JHS88_11735	COG3706	GGDEF domain
JHS88_11740	COG2166	iron-sulfur cluster assembly
JHS88_11745	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
JHS88_11750	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
JHS88_11760	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
JHS88_11760	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
JHS88_11770	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
JHS88_11775	COG1074	ATP-dependent DNA helicase activity
JHS88_11780	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
JHS88_11800	COG3141	response to X-ray
JHS88_11805	COG2171	N-acyltransferase activity
JHS88_11810	COG0584	glycerophosphoryl diester phosphodiesterase
JHS88_11815	COG2271	Major facilitator Superfamily
JHS88_11820	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
JHS88_11825	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
JHS88_11830	COG1349	DNA-binding transcription factor activity
JHS88_11835	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
JHS88_11840	COG0598	Magnesium transport protein CorA
JHS88_11855	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JHS88_11860	COG1609	Transcriptional regulator
JHS88_11865	COG2211	Major facilitator Superfamily
JHS88_11880	COG2017	converts alpha-aldose to the beta-anomer
JHS88_11885	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
JHS88_11895	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
JHS88_11900	COG1609	Transcriptional regulator
JHS88_11905	COG3250	beta-galactosidase activity
JHS88_11910	COG2731	YhcH YjgK YiaL family protein
JHS88_11915	COG0531	amino acid
JHS88_11920	COG0583	DNA-binding transcription factor activity
JHS88_11985	COG4964	Belongs to the GSP D family
JHS88_12010	COG2169	Transcriptional regulator
JHS88_12015	COG1022	Amp-dependent synthetase and ligase
JHS88_12025	COG0583	DNA-binding transcription factor activity
JHS88_12030	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
JHS88_12035	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
JHS88_12045	COG0560	Phosphoserine phosphatase
JHS88_12055	COG0813	purine-nucleoside phosphorylase activity
JHS88_12060	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
JHS88_12065	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
JHS88_12070	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
JHS88_12075	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JHS88_12080	COG0084	hydrolase, TatD family'
JHS88_12090	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
JHS88_12110	COG3153	acetyltransferase
JHS88_12115	COG3154	lipid carrier protein
JHS88_12125	COG0826	peptidase U32
JHS88_12130	COG0826	peptidase U32
JHS88_12135	COG0534	Mate efflux family protein
JHS88_12150	COG1185	polyribonucleotide nucleotidyltransferase activity
JHS88_12155	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
JHS88_12160	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
JHS88_12165	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
JHS88_12170	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
JHS88_12175	COG0195	Participates in both transcription termination and antitermination
JHS88_12180	COG0779	Required for maturation of 30S ribosomal subunits
JHS88_12195	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
JHS88_12200	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
JHS88_12205	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
JHS88_12210	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
JHS88_12215	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
JHS88_12220	COG1534	Rna-binding protein
JHS88_12225	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
JHS88_12230	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
JHS88_12235	COG2027	D-alanyl-D-alanine carboxypeptidase
JHS88_12245	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
JHS88_12250	COG0739	heme binding
JHS88_12255	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JHS88_12265	COG0316	Belongs to the HesB IscA family
JHS88_12270	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
JHS88_12275	COG0628	permease
JHS88_12280	COG2813	Specifically methylates the guanine in position
JHS88_12285	COG0784	Response regulator, receiver
JHS88_12285	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JHS88_12285	COG2198	Histidine kinase
JHS88_12285	COG2205	protein histidine kinase activity
JHS88_12290	COG0747	negative chemotaxis
JHS88_12300	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JHS88_12305	COG0444	Belongs to the ABC transporter superfamily
JHS88_12310	COG4608	Belongs to the ABC transporter superfamily
JHS88_12320	COG2971	BadF BadG BcrA BcrD
JHS88_12335	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
JHS88_12340	COG3842	ATPase activity
JHS88_12350	COG1840	ABC-type Fe3 transport system, periplasmic component
JHS88_12355	COG0004	ammonium transporteR
JHS88_12365	COG3112	Uncharacterised protein family (UPF0231)
JHS88_12370	COG1049	propionate catabolic process, 2-methylcitrate cycle
JHS88_12375	COG1752	Esterase of the alpha-beta hydrolase superfamily
JHS88_12380	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JHS88_12385	COG1643	Atp-dependent helicase
JHS88_12390	COG1489	DNA binding
JHS88_12400	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
JHS88_12410	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
JHS88_12415	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
JHS88_12420	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
JHS88_12425	COG1560	Kdo2-lipid A biosynthetic process
JHS88_12430	COG0842	Transport permease protein
JHS88_12435	COG1131	(ABC) transporter
JHS88_12440	COG0659	secondary active sulfate transmembrane transporter activity
JHS88_12445	COG0288	reversible hydration of carbon dioxide
JHS88_12460	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JHS88_12465	COG0508	dehydrogenase complex catalyzes the overall conversion of
JHS88_12470	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
JHS88_12475	COG2186	Transcriptional regulator
JHS88_12485	COG0157	Belongs to the NadC ModD family
JHS88_12495	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
JHS88_12500	COG1459	type II secretion system
JHS88_12510	COG0237	dephospho-CoA kinase activity
JHS88_12515	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
JHS88_12520	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
JHS88_12525	COG0335	large ribosomal subunit rRNA binding
JHS88_12530	COG0336	Belongs to the RNA methyltransferase TrmD family
JHS88_12535	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
JHS88_12540	COG0228	four-way junction DNA binding
JHS88_12545	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
JHS88_12550	COG4137	Cytochrome C assembly protein
JHS88_12555	COG4536	flavin adenine dinucleotide binding
JHS88_12560	COG1854	S-ribosylhomocysteine lyase activity
JHS88_12570	COG2918	glutathione biosynthetic process
JHS88_12575	COG0612	Peptidase, M16
JHS88_12580	COG1238	metal cluster binding
JHS88_12590	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
JHS88_12595	COG5016	pyruvate
JHS88_12595	COG0511	ligase activity, forming carbon-carbon bonds
JHS88_12600	COG3630	sodium ion export across plasma membrane
JHS88_12660	COG0527	aspartate kinase activity
JHS88_12665	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
JHS88_12670	COG2137	regulation of response to DNA damage stimulus
JHS88_12675	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
JHS88_12680	COG1546	Belongs to the CinA family
JHS88_12685	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
JHS88_12690	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
JHS88_12700	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
JHS88_12705	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
JHS88_12710	COG0585	pseudouridine synthase activity
JHS88_12715	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
JHS88_12720	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
JHS88_12725	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
JHS88_12730	COG0148	phosphopyruvate hydratase activity
JHS88_12735	COG0504	CTP synthase activity
JHS88_12740	COG3956	TIGRFAM MazG family protein
JHS88_12745	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
JHS88_12750	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
JHS88_12760	COG0736	holo-[acyl-carrier-protein] synthase activity
JHS88_12765	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
JHS88_12770	COG1381	Involved in DNA repair and RecF pathway recombination
JHS88_12775	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
JHS88_12780	COG0571	ribonuclease III activity
JHS88_12790	COG0481	GTPase activity
JHS88_12795	COG3086	response to oxidative stress
JHS88_12805	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
JHS88_12810	COG1595	DNA-templated transcription, initiation
JHS88_12815	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
JHS88_12820	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
JHS88_12825	COG0354	folic acid binding
JHS88_12840	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JHS88_12845	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JHS88_12850	COG3079	Belongs to the UPF0149 family
JHS88_12855	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
JHS88_12865	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
JHS88_12870	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
JHS88_12875	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JHS88_12885	COG0583	DNA-binding transcription factor activity
JHS88_12895	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
JHS88_12900	COG0668	transmembrane transport
JHS88_12905	COG0191	fructose-bisphosphate aldolase activity
JHS88_12910	COG0126	phosphoglycerate kinase activity
JHS88_12915	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
JHS88_12920	COG4771	TonB-dependent receptor
JHS88_12925	COG0583	DNA-binding transcription factor activity
JHS88_12930	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
JHS88_12935	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
JHS88_12945	COG3091	SprT-like family
JHS88_12950	COG2356	endonuclease I
JHS88_12955	COG1385	rRNA (uridine-N3-)-methyltransferase activity
JHS88_12960	COG0189	ligase activity
JHS88_12965	COG1678	Uncharacterized ACR, COG1678
JHS88_12970	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
JHS88_12985	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
JHS88_12990	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
JHS88_12995	COG0762	integral membrane protein
JHS88_13000	COG1872	DUF167
JHS88_13010	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
JHS88_13015	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JHS88_13020	COG2066	Belongs to the glutaminase family
JHS88_13030	COG0220	tRNA (guanine-N7-)-methyltransferase activity
JHS88_13040	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
JHS88_13045	COG0741	lytic transglycosylase activity
JHS88_13085	COG0840	transmembrane signaling receptor activity
JHS88_13115	COG1012	belongs to the aldehyde dehydrogenase family
JHS88_13160	COG3437	response regulator, receiver
JHS88_13170	COG3394	polysaccharide catabolic process
JHS88_13175	COG1486	melibiose metabolic process
JHS88_13180	COG1447	Phosphotransferase system cellobiose-specific component IIA
JHS88_13185	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JHS88_13190	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JHS88_13195	COG0726	polysaccharide deacetylase
JHS88_13205	COG1028	Short-chain dehydrogenase reductase Sdr
JHS88_13220	COG0795	lipopolysaccharide-transporting ATPase activity
JHS88_13225	COG0795	lipopolysaccharide-transporting ATPase activity
JHS88_13230	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
JHS88_13235	COG2927	DNA polymerase III (CHI subunit)
JHS88_13240	COG0525	valine-tRNA ligase activity
JHS88_13265	COG2235	arginine
JHS88_13270	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
JHS88_13280	COG0540	Belongs to the ATCase OTCase family
JHS88_13285	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
JHS88_13290	COG0251	oxidation-reduction process
JHS88_13295	COG0204	Acyl-transferase
JHS88_13300	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
JHS88_13305	COG5007	Belongs to the BolA IbaG family
JHS88_13315	COG2854	intermembrane phospholipid transfer
JHS88_13320	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
JHS88_13325	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
JHS88_13330	COG1127	ABC transporter
JHS88_13340	COG0517	IMP dehydrogenase activity
JHS88_13340	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
JHS88_13350	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
JHS88_13355	COG1137	ATPase activity
JHS88_13365	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
JHS88_13370	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JHS88_13375	COG1660	Displays ATPase and GTPase activities
JHS88_13380	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JHS88_13385	COG2239	Acts as a magnesium transporter
JHS88_13390	COG0312	modulator of DNA gyrase
JHS88_13395	COG3028	Belongs to the UPF0307 family
JHS88_13400	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JHS88_13405	COG0564	pseudouridine synthase activity
JHS88_13415	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
JHS88_13420	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
JHS88_13425	COG0312	modulator of DNA gyrase
JHS88_13430	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JHS88_13435	COG3164	Protein of unknown function
JHS88_13445	COG0424	maF-like protein
JHS88_13450	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
JHS88_13455	COG1792	Involved in formation and maintenance of cell shape
JHS88_13460	COG1077	Cell shape determining protein MreB Mrl
JHS88_13495	COG2165	general secretion pathway protein
JHS88_13505	COG1459	type II secretion system
JHS88_13510	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
JHS88_13520	COG3267	Type II secretory pathway component ExeA
JHS88_13520	COG3409	Peptidoglycan-binding domain 1 protein
JHS88_13545	COG2199	diguanylate cyclase activity
JHS88_13545	COG2200	EAL domain
JHS88_13550	COG0629	single-stranded DNA binding
JHS88_13565	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
JHS88_13575	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
JHS88_13580	COG0527	aspartate kinase activity
JHS88_13585	COG0646	methionine synthase
JHS88_13585	COG1410	methionine synthase
JHS88_13600	COG3335	DDE superfamily endonuclease
JHS88_13655	COG0175	sulfate reduction
JHS88_13660	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JHS88_13665	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
JHS88_13685	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JHS88_13690	COG0735	belongs to the Fur family
JHS88_13700	COG0166	Belongs to the GPI family
JHS88_13705	COG0432	Pfam Uncharacterised protein family UPF0047
JHS88_13715	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
JHS88_13730	COG0359	binds to the 23S rRNA
JHS88_13740	COG2965	DNA replication, synthesis of RNA primer
JHS88_13745	COG0360	Binds together with S18 to 16S ribosomal RNA
JHS88_13750	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
JHS88_13755	COG0338	D12 class N6 adenine-specific DNA methyltransferase
JHS88_13765	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
JHS88_13770	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
JHS88_13800	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
JHS88_13810	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
JHS88_13810	COG0678	peroxiredoxin activity
JHS88_13820	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
JHS88_13820	COG0165	Argininosuccinate lyase
JHS88_13825	COG0137	argininosuccinate synthase activity
JHS88_13830	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
JHS88_13835	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
JHS88_13840	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JHS88_13845	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
JHS88_13855	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
JHS88_13860	COG0460	homoserine dehydrogenase
JHS88_13860	COG0527	aspartate kinase activity
JHS88_13865	COG0626	cystathionine gamma-synthase activity
JHS88_13875	COG0281	malic enzyme
JHS88_13885	COG2906	2 iron, 2 sulfur cluster binding
JHS88_13890	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
JHS88_13895	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
JHS88_13900	COG0049	tRNA binding
JHS88_13915	COG2923	Belongs to the DsrF TusC family
JHS88_13920	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
JHS88_13925	COG2964	Protein conserved in bacteria
JHS88_13930	COG0545	Peptidyl-prolyl cis-trans isomerase
JHS88_13940	COG2900	Belongs to the SlyX family
JHS88_13945	COG1446	asparaginase
JHS88_13950	COG1047	Peptidyl-prolyl cis-trans
JHS88_13965	COG2249	NAD(P)H dehydrogenase (quinone) activity
JHS88_13970	COG0488	(ABC) transporter
JHS88_13980	COG0429	hydrolase of the alpha beta-hydrolase fold
JHS88_13985	COG3089	Belongs to the UPF0270 family
JHS88_13990	COG3954	Phosphoribulokinase
JHS88_13995	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JHS88_14005	COG1012	belongs to the aldehyde dehydrogenase family
JHS88_14015	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
JHS88_14020	COG0512	Glutamine amidotransferase of anthranilate synthase
JHS88_14035	COG0180	Tryptophanyl-tRNA synthetase
JHS88_14040	COG0546	phosphoglycolate phosphatase activity
JHS88_14045	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JHS88_14050	COG0557	exoribonuclease II activity
JHS88_14055	COG1959	2 iron, 2 sulfur cluster binding
JHS88_14060	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JHS88_14060	COG1017	nitric oxide dioxygenase activity
JHS88_14065	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
JHS88_14070	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
JHS88_14075	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
JHS88_14080	COG0330	HflC and HflK could
JHS88_14085	COG0330	HflC and HflK could
JHS88_14090	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
JHS88_14100	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
JHS88_14105	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
JHS88_14110	COG0860	N-Acetylmuramoyl-L-alanine amidase
JHS88_14115	COG0802	atpase or kinase
JHS88_14120	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
JHS88_14190	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
JHS88_14195	COG1162	GTPase activity
JHS88_14200	COG0688	phosphatidylethanolamine metabolic process
JHS88_14205	COG0471	metal ion transport
JHS88_14255	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
JHS88_14260	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JHS88_14265	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
JHS88_14270	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
JHS88_14275	COG1045	serine acetyltransferase
JHS88_14280	COG4942	peptidase
JHS88_14300	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
JHS88_14305	COG1053	succinate dehydrogenase
JHS88_14310	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
JHS88_14315	COG3029	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
JHS88_14320	COG3080	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
JHS88_14330	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
JHS88_14335	COG1509	lysine 2,3-aminomutase activity
JHS88_14340	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
JHS88_14355	COG0459	protein refolding
JHS88_14365	COG0534	Mate efflux family protein
JHS88_14370	COG0205	6-phosphofructokinase activity
JHS88_14380	COG3678	ATP-independent chaperone mediated protein folding
JHS88_14385	COG0745	RESPONSE REGULATOR receiver
JHS88_14390	COG2205	protein histidine kinase activity
JHS88_14400	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
JHS88_14405	COG3030	protein affecting phage T7 exclusion by the F plasmid
JHS88_14410	COG1027	Aspartate ammonia-lyase
JHS88_14415	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
JHS88_14420	COG4232	protein-disulfide reductase activity
JHS88_14430	COG3263	regulation of cellular component size
JHS88_14440	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JHS88_14465	COG2814	Major facilitator Superfamily
JHS88_14480	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JHS88_14485	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
JHS88_14490	COG0511	ligase activity, forming carbon-carbon bonds
JHS88_14495	COG0439	Biotin carboxylase
JHS88_14500	COG2264	protein methyltransferase activity
JHS88_14505	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JHS88_14510	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
JHS88_14515	COG2814	Major facilitator Superfamily
JHS88_14520	COG0488	(ABC) transporter
JHS88_14525	COG3706	GGDEF domain
JHS88_14595	COG1982	Orn Lys Arg decarboxylase major
JHS88_14600	COG0531	amino acid
JHS88_14605	COG3710	Transcriptional regulator
JHS88_14610	COG0789	Transcriptional regulator
JHS88_14615	COG0138	bifunctional purine biosynthesis protein purh
JHS88_14620	COG0151	Belongs to the GarS family
JHS88_14635	COG1253	flavin adenine dinucleotide binding
JHS88_14645	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JHS88_14650	COG1573	uracil-dna glycosylase
JHS88_14655	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
JHS88_14670	COG2816	NAD+ diphosphatase activity
JHS88_14675	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
JHS88_14680	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
JHS88_14685	COG0085	RNA polymerase activity
JHS88_14690	COG0222	ribosome binding
JHS88_14695	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
JHS88_14700	COG0081	regulation of translation
JHS88_14705	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
JHS88_14710	COG0250	Participates in transcription elongation, termination and antitermination
JHS88_14715	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
JHS88_14720	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
JHS88_14755	COG0812	UDP-N-acetylmuramate dehydrogenase activity
JHS88_14765	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JHS88_14820	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
JHS88_14830	COG4206	TonB-dependent receptor
JHS88_14835	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
JHS88_14850	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JHS88_14855	COG0534	Mate efflux family protein
JHS88_14860	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
JHS88_14865	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
JHS88_14870	COG2937	Belongs to the GPAT DAPAT family
JHS88_14875	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
JHS88_14880	COG3161	chorismate lyase activity
JHS88_14885	COG1580	Controls the rotational direction of flagella during chemotaxis
JHS88_14890	COG0705	Rhomboid family
JHS88_14895	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JHS88_14905	COG2177	Part of the ABC transporter FtsEX involved in
JHS88_14910	COG2884	Cell division ATP-binding protein ftsE
JHS88_14915	COG0552	protein localization to endoplasmic reticulum
JHS88_14920	COG0742	ribosomal rna small subunit methyltransferase
JHS88_14930	COG2095	MarC family integral membrane protein
JHS88_14975	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
JHS88_14980	COG0640	Transcriptional regulator
JHS88_14985	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
JHS88_14990	COG1280	lysine exporter protein (LysE YggA)
JHS88_14995	COG2267	carboxylic ester hydrolase activity
JHS88_15000	COG0561	phosphatase activity
JHS88_15015	COG3148	PFAM DTW domain containing protein
JHS88_15020	COG2199	diguanylate cyclase activity
JHS88_15020	COG2200	EAL domain
JHS88_15020	COG3287	FIST C domain
JHS88_15025	COG1011	Hydrolase
JHS88_15030	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
JHS88_15040	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
JHS88_15045	COG0019	diaminopimelate decarboxylase activity
JHS88_15055	COG1965	Belongs to the frataxin family
JHS88_15060	COG3072	Adenylate cyclase
JHS88_15065	COG0181	hydroxymethylbilane synthase activity
JHS88_15070	COG1587	Uroporphyrinogen-III synthase
JHS88_15075	COG2959	enzyme of heme biosynthesis
JHS88_15080	COG3071	HemY protein
JHS88_15125	COG0633	Ferredoxin
JHS88_15130	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
JHS88_15145	COG3118	belongs to the thioredoxin family
JHS88_15150	COG0513	Belongs to the DEAD box helicase family
JHS88_15155	COG0248	Ppx GppA phosphatase
JHS88_15160	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
JHS88_15170	COG0514	ATP-dependent DNA helicase (RecQ)
JHS88_15235	COG2962	Rard protein
JHS88_15295	COG1280	lysine exporter protein (LysE YggA)
JHS88_15300	COG0405	Gamma-glutamyltransferase
JHS88_15305	COG0210	DNA helicase
JHS88_15315	COG3220	belongs to the UPF0276 family
JHS88_15345	COG0006	proline dipeptidase activity
JHS88_15345	COG0006	proline dipeptidase activity
JHS88_15355	COG2022	thiamine diphosphate biosynthetic process
JHS88_15360	COG2104	thiamine diphosphate biosynthetic process
JHS88_15365	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JHS88_15370	COG0352	thiamine-phosphate diphosphorylase activity
JHS88_15375	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
JHS88_15380	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
JHS88_15435	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
JHS88_15445	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
JHS88_15450	COG0408	coproporphyrinogen oxidase activity
JHS88_15455	COG0009	L-threonylcarbamoyladenylate synthase
JHS88_15460	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
JHS88_15465	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
JHS88_15470	COG0551	DNA topoisomerase type I activity
JHS88_15475	COG2922	Belongs to the Smg family
JHS88_15480	COG0758	DNA mediated transformation
JHS88_15490	COG0242	peptide deformylase activity
JHS88_15495	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
JHS88_15500	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
JHS88_15500	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
JHS88_15505	COG0569	domain protein
JHS88_15510	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JHS88_15520	COG1272	protein, Hemolysin III
JHS88_15525	COG4326	sporulation control protein
JHS88_15535	COG3084	Protein conserved in bacteria
JHS88_15545	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
JHS88_15550	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
JHS88_15555	COG0204	Acyl-transferase
JHS88_15565	COG0606	chelatase, subunit chli
JHS88_15575	COG3978	acetolactate synthase activity
JHS88_15580	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JHS88_15585	COG0129	dihydroxy-acid dehydratase activity
JHS88_15595	COG0583	DNA-binding transcription factor activity
JHS88_15600	COG2814	Major facilitator Superfamily
JHS88_15610	COG0765	amino acid transport
JHS88_15615	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
JHS88_15620	COG0355	proton-transporting ATP synthase activity, rotational mechanism
JHS88_15625	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
JHS88_15630	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
JHS88_15635	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
JHS88_15640	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
JHS88_15655	COG0356	it plays a direct role in the translocation of protons across the membrane
JHS88_15660	COG3312	ion transport
JHS88_15665	COG1475	DNA binding
JHS88_15670	COG1192	Involved in chromosome partitioning
JHS88_15675	COG0357	Ribosomal RNA small subunit methyltransferase G
JHS88_15680	COG0445	tRNA wobble uridine modification
JHS88_15685	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
JHS88_15690	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
JHS88_15695	COG0706	membrane insertase activity
JHS88_15705	COG0594	ribonuclease P activity
JHS88_15715	COG1126	abc transporter atp-binding protein
JHS88_15755	COG1304	FMN binding
JHS88_15765	COG0583	DNA-binding transcription factor activity
JHS88_15775	COG4172	Belongs to the ABC transporter superfamily
JHS88_15785	COG1067	ATP-dependent peptidase activity
JHS88_15810	COG1247	-acetyltransferase
JHS88_15815	COG0437	4 iron, 4 sulfur cluster binding
JHS88_15820	COG0348	domain, Protein
JHS88_15835	COG1122	ATPase activity
JHS88_15840	COG4720	Psort location CytoplasmicMembrane, score
JHS88_15845	COG1566	PFAM secretion protein HlyD family protein
JHS88_15855	COG3706	GGDEF domain
JHS88_15870	COG0813	purine-nucleoside phosphorylase activity
JHS88_15875	COG3272	Protein of unknown function (DUF1722)
JHS88_15880	COG0789	Transcriptional regulator
JHS88_15885	COG0415	Belongs to the DNA photolyase family
JHS88_15890	COG1376	ErfK ybiS ycfS ynhG family protein
JHS88_15890	COG1388	LysM domain
JHS88_15900	COG0513	Belongs to the DEAD box helicase family
JHS88_15905	COG1770	oligopeptidase
JHS88_15910	COG4771	TonB-dependent receptor
JHS88_15940	COG0573	inorganic phosphate transmembrane transporter activity
JHS88_15945	COG0581	inorganic phosphate transmembrane transporter activity
JHS88_15950	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
JHS88_15965	COG2304	oxidoreductase activity
JHS88_15985	COG0714	Associated with various cellular activities
JHS88_15990	COG0840	transmembrane signaling receptor activity
JHS88_16035	COG3423	Transcriptional regulator
JHS88_16090	COG3012	SEC-C Motif Domain Protein
JHS88_16295	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
JHS88_16300	COG1120	ATPase activity
JHS88_16305	COG4774	siderophore transport
JHS88_16310	COG1132	(ABC) transporter
JHS88_16315	COG2205	protein histidine kinase activity
JHS88_16315	COG2205	protein histidine kinase activity
JHS88_16325	COG0569	domain protein
JHS88_16330	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JHS88_16335	COG5001	Diguanylate cyclase
JHS88_16335	COG3300	MHYT domain
JHS88_16340	COG3241	Transfers electrons from cytochrome c551 to cytochrome oxidase
JHS88_16345	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JHS88_16360	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JHS88_16360	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JHS88_16360	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JHS88_16365	COG2207	Transcriptional regulator
JHS88_16375	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JHS88_16380	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JHS88_16385	COG2084	Dehydrogenase
JHS88_16390	COG0753	catalase activity
JHS88_16400	COG2130	NADP-dependent
JHS88_16405	COG1309	transcriptional regulator
JHS88_16410	COG3097	Belongs to the UPF0267 family
JHS88_16470	COG3842	ATPase activity
JHS88_16480	COG1175	transmembrane transport
JHS88_16485	COG3833	ABC-type maltose transport systems, permease component
JHS88_16505	COG3746	phosphate-selective porin O and P
JHS88_16520	COG1028	Short-chain dehydrogenase reductase Sdr
JHS88_16540	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
JHS88_16550	COG0625	glutathione transferase activity
JHS88_16555	COG1686	Belongs to the peptidase S11 family
JHS88_16575	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
JHS88_16590	COG1278	Cold shock
JHS88_16595	COG1741	Belongs to the pirin family
JHS88_16600	COG4667	esterase of the alpha-beta hydrolase superfamily
JHS88_16625	COG2814	Major facilitator Superfamily
JHS88_16635	COG0673	inositol 2-dehydrogenase activity
JHS88_16640	COG2194	sulfuric ester hydrolase activity
JHS88_16645	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
JHS88_16655	COG2205	protein histidine kinase activity
JHS88_16660	COG0745	RESPONSE REGULATOR receiver
JHS88_16665	COG4221	oxidoreductase activity
JHS88_16680	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
JHS88_16700	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
JHS88_16710	COG2814	Major facilitator Superfamily
JHS88_16720	COG1418	mRNA catabolic process
JHS88_16730	COG0402	S-adenosylhomocysteine deaminase activity
JHS88_16735	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
JHS88_16740	COG2239	Acts as a magnesium transporter
JHS88_16745	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
JHS88_16750	COG1566	PFAM secretion protein HlyD family protein
JHS88_16775	COG0745	RESPONSE REGULATOR receiver
JHS88_16780	COG2205	protein histidine kinase activity
JHS88_16795	COG0531	amino acid
JHS88_16800	COG1522	sequence-specific DNA binding
JHS88_16830	COG2205	protein histidine kinase activity
JHS88_16830	COG0784	Response regulator, receiver
JHS88_16830	COG5002	protein histidine kinase activity
JHS88_16835	COG0673	inositol 2-dehydrogenase activity
JHS88_16840	COG0534	Mate efflux family protein
JHS88_16845	COG2926	Belongs to the UPF0265 family
JHS88_16855	COG3132	Protein of unknown function, DUF480
JHS88_16860	COG2827	Endonuclease containing a URI domain
JHS88_16865	COG1879	ABC-type sugar transport system periplasmic component
JHS88_16870	COG2205	protein histidine kinase activity
JHS88_16870	COG0784	Response regulator, receiver
JHS88_16880	COG1566	PFAM secretion protein HlyD family protein
JHS88_16900	COG1522	sequence-specific DNA binding
JHS88_16925	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JHS88_16930	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JHS88_16950	COG0183	Belongs to the thiolase family
JHS88_16970	COG3005	denitrification pathway
JHS88_16980	COG0243	molybdopterin cofactor binding
JHS88_16990	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
JHS88_16995	COG3850	Histidine kinase
JHS88_17000	COG2197	response regulator
JHS88_17015	COG2195	Cleaves the N-terminal amino acid of tripeptides
JHS88_17035	COG0840	transmembrane signaling receptor activity
JHS88_17045	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JHS88_17055	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
JHS88_17060	COG2814	Major facilitator Superfamily
JHS88_17065	COG0840	transmembrane signaling receptor activity
JHS88_17070	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
JHS88_17075	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
JHS88_17095	COG2897	thiosulfate sulfurtransferase activity
JHS88_17110	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JHS88_17120	COG0302	gtp cyclohydrolase
JHS88_17125	COG1914	H( )-stimulated, divalent metal cation uptake system
JHS88_17135	COG0038	chloride channel
JHS88_17150	COG4989	oxidoreductase activity
JHS88_17165	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
JHS88_17165	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
JHS88_17170	COG0516	GMP reductase activity
JHS88_17175	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JHS88_17240	COG0674	pyruvate-flavodoxin oxidoreductase activity
JHS88_17240	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
JHS88_17245	COG1013	pyruvate-flavodoxin oxidoreductase activity
JHS88_17250	COG3474	cytochrome
JHS88_17260	COG0789	Transcriptional regulator
JHS88_17265	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JHS88_17270	COG0384	phenazine biosynthesis protein PhzF
JHS88_17280	COG1294	oxidase, subunit
JHS88_17285	COG1271	oxidase subunit
JHS88_17290	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JHS88_17295	COG0110	maltose O-acetyltransferase activity
JHS88_17300	COG3264	Mechanosensitive ion channel
JHS88_17300	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
JHS88_17315	COG4999	Histidine kinase
JHS88_17315	COG3850	Histidine kinase
JHS88_17315	COG3437	response regulator, receiver
JHS88_17315	COG2205	protein histidine kinase activity
JHS88_17325	COG4770	biotin carboxylase activity
JHS88_17330	COG1024	Enoyl-CoA hydratase
JHS88_17335	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
JHS88_17340	COG1960	acyl-CoA dehydrogenase activity
JHS88_17350	COG0183	Belongs to the thiolase family
JHS88_17360	COG1960	acyl-CoA dehydrogenase activity
JHS88_17365	COG1024	Enoyl-CoA hydratase
JHS88_17380	COG1028	Short-chain dehydrogenase reductase Sdr
JHS88_17385	COG3706	GGDEF domain
JHS88_17390	COG1309	transcriptional regulator
JHS88_17395	COG1012	belongs to the aldehyde dehydrogenase family
JHS88_17410	COG4176	ABC-type proline glycine betaine transport system permease component
JHS88_17415	COG0517	IMP dehydrogenase activity
JHS88_17415	COG4175	Glycine betaine
JHS88_17430	COG0330	HflC and HflK could
JHS88_17440	COG5001	Diguanylate cyclase
JHS88_17440	COG3300	MHYT domain
JHS88_17450	COG0784	Response regulator, receiver
JHS88_17450	COG2205	protein histidine kinase activity
JHS88_17505	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
JHS88_17510	COG5001	Diguanylate cyclase
JHS88_17515	COG1869	D-ribose catabolic process
JHS88_17520	COG1129	ABC transporter
JHS88_17525	COG1172	Belongs to the binding-protein-dependent transport system permease family
JHS88_17530	COG1879	ABC-type sugar transport system periplasmic component
JHS88_17535	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JHS88_17540	COG1609	Transcriptional regulator
JHS88_17555	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
JHS88_17575	COG0745	RESPONSE REGULATOR receiver
JHS88_17590	COG1785	Belongs to the alkaline phosphatase family
JHS88_17615	COG0814	amino acid
JHS88_17625	COG0243	molybdopterin cofactor binding
JHS88_17630	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
JHS88_17630	COG1648	precorrin-2 dehydrogenase activity
JHS88_17645	COG3707	response regulator
JHS88_17650	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JHS88_17655	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JHS88_17660	COG1116	anion transmembrane transporter activity
JHS88_17665	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JHS88_17665	COG2146	nitrite reductase [NAD(P)H] activity
JHS88_17720	COG0515	serine threonine protein kinase
JHS88_17720	COG2815	serine threonine protein kinase
JHS88_17755	COG0631	protein serine/threonine phosphatase activity
JHS88_17825	COG0420	3'-5' exonuclease activity
JHS88_17830	COG0419	ATPase involved in DNA repair
JHS88_17850	COG3040	lipid binding
JHS88_17860	COG2814	Major facilitator Superfamily
JHS88_17870	COG1288	antiporter activity
JHS88_17880	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
JHS88_17895	COG2425	protein containing a von Willebrand factor type A (vWA) domain
JHS88_17910	COG0583	DNA-binding transcription factor activity
JHS88_17915	COG0277	FAD linked oxidase domain protein
JHS88_17935	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
JHS88_17975	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
JHS88_17975	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
JHS88_18010	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
JHS88_18015	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JHS88_18025	COG2116	formate transmembrane transporter activity
JHS88_18045	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
JHS88_18075	COG0534	Mate efflux family protein
JHS88_18080	COG0745	RESPONSE REGULATOR receiver
JHS88_18080	COG2205	protein histidine kinase activity
JHS88_18080	COG3292	Two component regulator propeller
JHS88_18090	COG3118	belongs to the thioredoxin family
JHS88_18095	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JHS88_18120	COG2271	Major facilitator Superfamily
JHS88_18125	COG3851	Histidine kinase
JHS88_18130	COG2197	response regulator
JHS88_18140	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
JHS88_18145	COG0583	DNA-binding transcription factor activity
JHS88_18150	COG0243	molybdopterin cofactor binding
JHS88_18155	COG0446	pyridine nucleotide-disulphide oxidoreductase
JHS88_18180	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JHS88_18195	COG1328	CTP reductase activity
JHS88_18200	COG0602	queuosine metabolic process
JHS88_18205	COG0534	Mate efflux family protein
JHS88_18220	COG0189	ligase activity
JHS88_18220	COG4067	protein conserved in archaea
JHS88_18230	COG3111	PFAM Bacterial OB fold (BOF) protein
JHS88_18235	COG1492	cobalamin metabolic process
JHS88_18240	COG0725	ABC transporter, periplasmic molybdate-binding protein
JHS88_18245	COG4149	molybdate abc transporter
JHS88_18250	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
JHS88_18260	COG2203	Gaf domain
JHS88_18260	COG4251	negative regulation of phosphorylation
JHS88_18260	COG3706	GGDEF domain
JHS88_18260	COG5001	Diguanylate cyclase
JHS88_18285	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
JHS88_18290	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
JHS88_18315	COG3140	Belongs to the UPF0181 family
JHS88_18320	COG0589	response to stress
JHS88_18330	COG0583	DNA-binding transcription factor activity
JHS88_18410	COG0023	Translation Initiation Factor
JHS88_18420	COG1181	Belongs to the D-alanine--D-alanine ligase family
JHS88_18430	COG0045	succinate-CoA ligase (ADP-forming) activity
JHS88_18430	COG1042	CoA-binding domain protein
JHS88_18430	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JHS88_18435	COG0583	DNA-binding transcription factor activity
JHS88_18440	COG1629	transport
JHS88_18440	COG4771	TonB-dependent receptor
JHS88_18445	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
JHS88_18450	COG5002	protein histidine kinase activity
JHS88_18450	COG5001	Diguanylate cyclase
JHS88_18450	COG3447	MASE1 domain protein
JHS88_18455	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
JHS88_18460	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
JHS88_18465	COG1984	allophanate hydrolase subunit 2
JHS88_18475	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
JHS88_18480	COG4181	ATPase activity
JHS88_18490	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
JHS88_18495	COG5001	Diguanylate cyclase
JHS88_18495	COG3300	MHYT domain
JHS88_18505	COG0484	heat shock protein binding
JHS88_18530	COG4533	DNA binding
JHS88_18540	COG2050	protein possibly involved in aromatic compounds catabolism
JHS88_18555	COG2067	long-chain fatty acid transport protein
JHS88_18560	COG2267	carboxylic ester hydrolase activity
JHS88_18575	COG0861	Integral membrane protein TerC family
JHS88_18580	COG0737	Belongs to the 5'-nucleotidase family
JHS88_18585	COG3593	DNA synthesis involved in DNA repair
JHS88_18595	COG0583	DNA-binding transcription factor activity
JHS88_18600	COG2116	formate transmembrane transporter activity
JHS88_18605	COG2353	YceI-like domain
JHS88_18610	COG3038	cytochrome b561
JHS88_18625	COG4943	cyclic-guanylate-specific phosphodiesterase activity
JHS88_18630	COG0513	Belongs to the DEAD box helicase family
JHS88_18635	COG3124	Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP
JHS88_18640	COG0840	transmembrane signaling receptor activity
JHS88_18645	COG0546	phosphoglycolate phosphatase activity
JHS88_18650	COG0784	Response regulator, receiver
JHS88_18650	COG3437	response regulator, receiver
JHS88_18665	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JHS88_18670	COG2759	Belongs to the formate--tetrahydrofolate ligase family
JHS88_18675	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
JHS88_18685	COG2207	Transcriptional regulator
JHS88_18690	COG1979	alcohol dehydrogenase
JHS88_18715	COG2271	Major facilitator Superfamily
JHS88_18720	COG0469	pyruvate kinase activity
JHS88_18725	COG1126	abc transporter atp-binding protein
JHS88_18730	COG0765	amino acid transport
JHS88_18735	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JHS88_18740	COG0765	amino acid transport
JHS88_18745	COG2203	Gaf domain
JHS88_18745	COG2200	EAL domain
JHS88_18745	COG2199	diguanylate cyclase activity
JHS88_18760	COG1609	Transcriptional regulator
JHS88_18765	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JHS88_18765	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
JHS88_18770	COG1105	Belongs to the carbohydrate kinase PfkB family
JHS88_18775	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
JHS88_18775	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JHS88_18775	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JHS88_18795	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JHS88_18815	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
JHS88_18820	COG0509	glycine decarboxylation via glycine cleavage system
JHS88_18825	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
JHS88_18825	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
JHS88_18870	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
JHS88_18875	COG0583	DNA-binding transcription factor activity
JHS88_18880	COG2176	DNA-directed DNA polymerase activity
JHS88_18920	COG0242	peptide deformylase activity
JHS88_18950	COG2239	Acts as a magnesium transporter
JHS88_18970	COG0346	lactoylglutathione lyase activity
JHS88_18975	COG1902	pentaerythritol trinitrate reductase activity
JHS88_18995	COG5642	Protein of unknown function (DUF2384)
JHS88_19000	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
JHS88_19015	COG4565	transcriptional regulatory protein
JHS88_19020	COG3290	protein histidine kinase activity
JHS88_19025	COG0471	metal ion transport
JHS88_19055	COG2076	Multidrug Resistance protein
JHS88_19070	COG0671	phosphoesterase, PA-phosphatase related
JHS88_19080	COG2962	Rard protein
JHS88_19095	COG0784	Response regulator, receiver
JHS88_19095	COG0835	chemotaxis
JHS88_19115	COG2197	response regulator
JHS88_19125	COG3706	GGDEF domain
JHS88_19130	COG2197	response regulator
JHS88_19135	COG5001	Diguanylate cyclase
JHS88_19135	COG3300	MHYT domain
JHS88_19150	COG0583	DNA-binding transcription factor activity
JHS88_19225	COG4964	Belongs to the GSP D family
JHS88_19250	COG2207	Transcriptional regulator
JHS88_19270	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
JHS88_19290	COG0456	acetyltransferase
JHS88_19290	COG1214	PFAM Peptidase M22, glycoprotease
JHS88_19300	COG3069	C4-dicarboxylate transmembrane transporter activity
JHS88_19305	COG1704	LemA family
JHS88_19310	COG0501	Belongs to the peptidase M48B family
JHS88_19335	COG0641	radical SAM
JHS88_19350	COG3111	PFAM Bacterial OB fold (BOF) protein
JHS88_19355	COG1597	lipid kinase activity
JHS88_19360	COG0583	DNA-binding transcription factor activity
JHS88_19365	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JHS88_19365	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JHS88_19395	COG0714	Associated with various cellular activities
JHS88_19400	COG0641	radical SAM
JHS88_19405	COG3119	arylsulfatase activity
JHS88_19420	COG3119	arylsulfatase activity
JHS88_19425	COG3119	arylsulfatase activity
JHS88_19430	COG0745	RESPONSE REGULATOR receiver
JHS88_19445	COG0784	Response regulator, receiver
JHS88_19445	COG2198	Histidine kinase
JHS88_19445	COG2205	protein histidine kinase activity
JHS88_19450	COG1879	ABC-type sugar transport system periplasmic component
JHS88_19455	COG1803	Methylglyoxal synthase
JHS88_19460	COG0210	DNA helicase
JHS88_19465	COG1289	transmembrane transporter activity
JHS88_19495	COG1629	transport
JHS88_19495	COG4771	TonB-dependent receptor
JHS88_19505	COG0789	Transcriptional regulator
JHS88_19510	COG4604	ABC transporter, ATP-binding protein
JHS88_19515	COG4605	iron ion homeostasis
JHS88_19520	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JHS88_19525	COG4607	ABC-type enterochelin transport system periplasmic component
JHS88_19545	COG2847	Copper chaperone PCu(A)C
JHS88_19550	COG0443	Heat shock 70 kDa protein
JHS88_19585	COG0625	glutathione transferase activity
JHS88_19600	COG4160	amino acid transport
JHS88_19605	COG4215	(ABC) transporter
JHS88_19610	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JHS88_19615	COG1126	abc transporter atp-binding protein
JHS88_19645	COG1902	pentaerythritol trinitrate reductase activity
JHS88_19665	COG0109	protoheme IX farnesyltransferase activity
JHS88_19670	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
JHS88_19675	COG1845	cytochrome c oxidase, subunit III
JHS88_19680	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
JHS88_19685	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
JHS88_19690	COG1028	Short-chain dehydrogenase reductase Sdr
JHS88_19700	COG1024	Enoyl-CoA hydratase
JHS88_19705	COG1024	Enoyl-CoA hydratase
JHS88_19720	COG0183	Belongs to the thiolase family
JHS88_19730	COG1960	acyl-CoA dehydrogenase activity
JHS88_19735	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
JHS88_19740	COG1024	Enoyl-CoA hydratase
JHS88_19750	COG5413	integral membrane protein
JHS88_19765	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
JHS88_19770	COG5001	Diguanylate cyclase
JHS88_19775	COG0513	Belongs to the DEAD box helicase family
JHS88_19780	COG4776	Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction
JHS88_19795	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
JHS88_19815	COG0840	transmembrane signaling receptor activity
JHS88_19820	COG1119	ATPase activity
JHS88_19825	COG2200	EAL domain
JHS88_19845	COG0513	Belongs to the DEAD box helicase family
JHS88_19850	COG0523	cobalamin synthesis protein
JHS88_19860	COG2039	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
JHS88_19870	COG0133	tryptophan synthase activity
JHS88_19875	COG4628	conserved protein (DUF2132)
JHS88_19880	COG0513	Belongs to the DEAD box helicase family
JHS88_19885	COG3530	Putative quorum-sensing-regulated virulence factor
JHS88_19905	COG2154	pterin-4-alpha-carbinolamine dehydratase
JHS88_19910	COG3186	Phenylalanine-4-hydroxylase
JHS88_19915	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JHS88_19920	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
JHS88_19955	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
JHS88_19960	COG1454	alcohol dehydrogenase
JHS88_19965	COG2133	pyrroloquinoline quinone binding
JHS88_19975	COG0783	Belongs to the Dps family
JHS88_19980	COG0840	transmembrane signaling receptor activity
JHS88_19990	COG1136	(ABC) transporter
JHS88_19990	COG0577	efflux transmembrane transporter activity
JHS88_20010	COG2199	diguanylate cyclase activity
JHS88_20025	COG1278	Cold shock
JHS88_20055	COG0545	Peptidyl-prolyl cis-trans isomerase
JHS88_20060	COG0109	protoheme IX farnesyltransferase activity
JHS88_20065	COG1612	heme a metabolic process
JHS88_20090	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
JHS88_20105	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
JHS88_20115	COG1280	lysine exporter protein (LysE YggA)
JHS88_20120	COG2207	Transcriptional regulator
JHS88_20145	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
JHS88_20150	COG0697	spore germination
JHS88_20165	COG2814	Major facilitator Superfamily
JHS88_20170	COG0583	DNA-binding transcription factor activity
JHS88_20175	COG5001	Diguanylate cyclase
JHS88_20180	COG0739	heme binding
JHS88_20200	COG3314	Sporulation integral membrane protein YlbJ
JHS88_20215	COG0814	amino acid
JHS88_20235	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
JHS88_20240	COG1072	(Pantothenic acid kinase))
JHS88_20250	COG1063	alcohol dehydrogenase
JHS88_20255	COG2213	PTS system mannitol-specific
JHS88_20260	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JHS88_20275	COG0798	PFAM Bile acid sodium symporter
JHS88_20285	COG1881	PFAM PEBP family protein
JHS88_20295	COG2706	6-phosphogluconolactonase activity
JHS88_20300	COG0840	transmembrane signaling receptor activity
JHS88_20310	COG1131	(ABC) transporter
JHS88_20315	COG0842	Transport permease protein
JHS88_20350	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JHS88_20380	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JHS88_20390	COG2067	long-chain fatty acid transport protein
JHS88_20400	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JHS88_20410	COG1505	serine-type exopeptidase activity
JHS88_20415	COG0488	(ABC) transporter
JHS88_20420	COG0589	response to stress
JHS88_20425	COG2249	NAD(P)H dehydrogenase (quinone) activity
JHS88_20445	COG0366	Alpha amylase catalytic
JHS88_20455	COG4934	collagen metabolic process
JHS88_20470	COG0583	DNA-binding transcription factor activity
JHS88_20475	COG0783	Belongs to the Dps family
JHS88_20480	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
JHS88_20505	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JHS88_20505	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
JHS88_20515	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JHS88_20520	COG0835	chemotaxis
JHS88_20520	COG0784	Response regulator, receiver
JHS88_20530	COG0748	coenzyme F420 binding
JHS88_20535	COG3721	Heme iron utilization protein
JHS88_20545	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
JHS88_20550	COG0811	peptide transport
JHS88_20555	COG0848	biopolymer transport protein
JHS88_20565	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JHS88_20570	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
JHS88_20610	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
JHS88_20615	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
JHS88_20620	COG0633	Ferredoxin
JHS88_20620	COG3217	Mosc domain protein beta barrel domain protein
JHS88_20620	COG3217	Mosc domain protein beta barrel domain protein
JHS88_20620	COG0633	Ferredoxin
JHS88_20625	COG0401	homolog of Blt101
JHS88_20630	COG0418	dihydroorotase activity
JHS88_20635	COG2354	Protein conserved in bacteria
JHS88_20665	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JHS88_20665	COG2207	Transcriptional regulator
JHS88_20670	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JHS88_20710	COG0513	Belongs to the DEAD box helicase family
JHS88_20720	COG0583	DNA-binding transcription factor activity
JHS88_20735	COG1902	pentaerythritol trinitrate reductase activity
JHS88_20740	COG1063	alcohol dehydrogenase
JHS88_20750	COG1028	Short-chain dehydrogenase reductase Sdr
JHS88_20760	COG3122	Protein conserved in bacteria
JHS88_20775	COG0583	DNA-binding transcription factor activity
JHS88_20780	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
JHS88_20785	COG0252	asparaginase activity
JHS88_20790	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
JHS88_20795	COG0574	Belongs to the PEP-utilizing enzyme family
JHS88_20795	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
JHS88_20810	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
JHS88_20830	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JHS88_20850	COG3706	GGDEF domain
JHS88_20870	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
JHS88_20900	COG3842	ATPase activity
JHS88_20940	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JHS88_20975	COG0583	DNA-binding transcription factor activity
JHS88_20985	COG4948	Mandelate Racemase Muconate Lactonizing
JHS88_21015	COG1342	Belongs to the UPF0251 family
JHS88_21020	COG3015	lipoprotein NlpE involved in copper resistance
JHS88_21025	COG3713	MltA-interacting MipA family protein
JHS88_21040	COG0583	DNA-binding transcription factor activity
JHS88_21065	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
JHS88_21075	COG1335	isochorismatase
JHS88_21085	COG0753	catalase activity
JHS88_21095	COG1349	DNA-binding transcription factor activity
JHS88_21100	COG0346	lactoylglutathione lyase activity
JHS88_21130	COG3537	Alpha-1,2-mannosidase
JHS88_21135	COG3537	Alpha-1,2-mannosidase
JHS88_21145	COG3537	Alpha-1,2-mannosidase
JHS88_21150	COG3537	Alpha-1,2-mannosidase
JHS88_21160	COG0737	Belongs to the 5'-nucleotidase family
JHS88_21170	COG1309	transcriptional regulator
JHS88_21190	COG1280	lysine exporter protein (LysE YggA)
JHS88_21205	COG0459	protein refolding
JHS88_21210	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
JHS88_21215	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JHS88_21240	COG1304	FMN binding
JHS88_21260	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JHS88_21275	COG1706	bacterial-type flagellum-dependent cell motility
JHS88_21280	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
JHS88_21285	COG4786	Flagellar basal body rod
JHS88_21290	COG4787	bacterial-type flagellum-dependent cell motility
JHS88_21295	COG1749	Flagellar hook protein flgE
JHS88_21300	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
JHS88_21305	COG1558	bacterial-type flagellum-dependent cell motility
JHS88_21310	COG1815	bacterial-type flagellum-dependent cell motility
JHS88_21330	COG0741	lytic transglycosylase activity
JHS88_21335	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
JHS88_21355	COG1760	l-serine dehydratase
JHS88_21360	COG3104	oligopeptide transport
JHS88_21380	COG0583	DNA-binding transcription factor activity
JHS88_21390	COG2866	Carboxypeptidase
JHS88_21395	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JHS88_21400	COG2990	Protein conserved in bacteria
JHS88_21425	COG3842	ATPase activity
JHS88_21435	COG1840	ABC-type Fe3 transport system, periplasmic component
JHS88_21440	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
JHS88_21445	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
JHS88_21450	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JHS88_21455	COG1609	Transcriptional regulator
JHS88_21485	COG3240	lipase activity
JHS88_21495	COG1136	(ABC) transporter
JHS88_21495	COG0577	efflux transmembrane transporter activity
JHS88_21500	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JHS88_21505	COG2067	long-chain fatty acid transport protein
JHS88_21510	COG3338	carbonate dehydratase activity
JHS88_21515	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
JHS88_21530	COG1011	Hydrolase
JHS88_21570	COG0110	maltose O-acetyltransferase activity
JHS88_21575	COG1765	OsmC-like protein
JHS88_21580	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JHS88_21580	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JHS88_21595	COG3046	protein related to deoxyribodipyrimidine photolyase
JHS88_21600	COG0415	Belongs to the DNA photolyase family
JHS88_21605	COG3706	GGDEF domain
JHS88_21620	COG0840	transmembrane signaling receptor activity
JHS88_21625	COG3706	GGDEF domain
JHS88_21640	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JHS88_21655	COG3033	Beta-eliminating lyase
JHS88_21665	COG0579	oxidoreductase
JHS88_21680	COG1114	Component of the transport system for branched-chain amino acids
JHS88_21685	COG2199	diguanylate cyclase activity
JHS88_21725	COG0583	DNA-binding transcription factor activity
JHS88_21730	COG0189	ligase activity
JHS88_21735	COG4067	protein conserved in archaea
JHS88_21735	COG0189	ligase activity
JHS88_21745	COG1166	arginine decarboxylase activity
JHS88_21750	COG0010	Belongs to the arginase family
JHS88_21755	COG2814	Major facilitator Superfamily
JHS88_21760	COG1770	oligopeptidase
JHS88_21775	COG1108	ABC-type Mn2 Zn2 transport systems permease components
JHS88_21780	COG1121	(ABC) transporter
JHS88_21785	COG0803	Belongs to the bacterial solute-binding protein 9 family
JHS88_21825	COG0848	biopolymer transport protein
JHS88_21830	COG0811	peptide transport
JHS88_21835	COG0811	peptide transport
JHS88_21855	COG0745	RESPONSE REGULATOR receiver
JHS88_21860	COG0039	L-malate dehydrogenase activity
JHS88_21865	COG0584	glycerophosphoryl diester phosphodiesterase
JHS88_21875	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JHS88_21930	COG1901	pseudouridine methyltransferase
JHS88_21935	COG0312	modulator of DNA gyrase
JHS88_21940	COG0312	modulator of DNA gyrase
JHS88_21945	COG0351	phosphomethylpyrimidine kinase
JHS88_21950	COG1116	anion transmembrane transporter activity
JHS88_21955	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JHS88_21960	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JHS88_21965	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
JHS88_21970	COG2145	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
JHS88_21975	COG0352	thiamine-phosphate diphosphorylase activity
JHS88_21985	COG0243	molybdopterin cofactor binding
JHS88_21990	COG3005	denitrification pathway
JHS88_22000	COG1028	Short-chain dehydrogenase reductase Sdr
JHS88_22015	COG0456	acetyltransferase
JHS88_22035	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JHS88_22040	COG1929	Belongs to the glycerate kinase type-1 family
JHS88_22045	COG2610	gluconate transmembrane transporter activity
JHS88_22050	COG3835	regulator
JHS88_22085	COG0583	DNA-binding transcription factor activity
JHS88_22095	COG0583	DNA-binding transcription factor activity
JHS88_22105	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
JHS88_22110	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
JHS88_22110	COG3408	Glycogen debranching enzyme
JHS88_22140	COG3047	cAMP biosynthetic process
JHS88_22145	COG1357	PFAM Pentapeptide repeats (8 copies)
JHS88_22175	COG2375	cellular response to nickel ion
JHS88_22180	COG0823	Involved in the tonB-independent uptake of proteins
JHS88_22185	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JHS88_22205	COG0800	Aldolase
JHS88_22210	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JHS88_22225	COG1917	Cupin 2, conserved barrel domain protein
JHS88_22235	COG1028	Short-chain dehydrogenase reductase Sdr
JHS88_22240	COG1414	Transcriptional regulator
JHS88_22255	COG0583	DNA-binding transcription factor activity
JHS88_22260	COG2162	N-hydroxyarylamine O-acetyltransferase activity
JHS88_22265	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
JHS88_22280	COG2199	diguanylate cyclase activity
JHS88_22290	COG0561	phosphatase activity
JHS88_22295	COG0583	DNA-binding transcription factor activity
JHS88_22310	COG0564	pseudouridine synthase activity
JHS88_22315	COG0534	Mate efflux family protein
JHS88_22320	COG5001	Diguanylate cyclase
JHS88_22330	COG3123	guanosine phosphorylase activity
JHS88_22370	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JHS88_22380	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
JHS88_22385	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
JHS88_22395	COG2259	Doxx family
JHS88_22400	COG1741	Belongs to the pirin family
JHS88_22420	COG0363	glucosamine-6-phosphate deaminase activity
JHS88_22430	COG0786	glutamate:sodium symporter activity
JHS88_22435	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JHS88_22440	COG1131	(ABC) transporter
JHS88_22450	COG0786	glutamate:sodium symporter activity
JHS88_22475	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
JHS88_22485	COG3279	Response regulator of the LytR AlgR family
JHS88_22490	COG3275	phosphorelay sensor kinase activity
JHS88_22520	COG0772	Belongs to the SEDS family
JHS88_22525	COG0217	transcriptional regulatory protein
JHS88_22545	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
JHS88_22545	COG3236	hydrolase activity, hydrolyzing N-glycosyl compounds
JHS88_22555	COG0444	Belongs to the ABC transporter superfamily
JHS88_22560	COG4608	Belongs to the ABC transporter superfamily
JHS88_22585	COG1444	tRNA N-acetyltransferase activity
JHS88_22605	COG3340	Belongs to the peptidase S51 family
JHS88_22610	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
JHS88_22615	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JHS88_22615	COG1263	PTS System
JHS88_22620	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
JHS88_22635	COG4166	transmembrane transport
JHS88_22695	COG0259	pyridoxamine-phosphate oxidase activity
JHS88_22720	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JHS88_22780	COG2842	Transposition protein
JHS88_22830	COG3012	SEC-C Motif Domain Protein
JHS88_23015	COG1132	(ABC) transporter
JHS88_23025	COG2207	Transcriptional regulator
JHS88_23040	COG0513	Belongs to the DEAD box helicase family
JHS88_23045	COG2258	MOSC domain
JHS88_23060	COG1486	melibiose metabolic process
JHS88_23065	COG0583	DNA-binding transcription factor activity
JHS88_23080	COG1595	DNA-templated transcription, initiation
JHS88_23105	COG3634	alkyl hydroperoxide reductase activity
JHS88_23115	COG1846	Transcriptional regulator
JHS88_23120	COG1764	response to oxidative stress
JHS88_23145	COG2160	L-arabinose isomerase activity
JHS88_23155	COG1069	ribulokinase activity
JHS88_23160	COG1879	ABC-type sugar transport system periplasmic component
JHS88_23165	COG1129	ABC transporter
JHS88_23170	COG1172	Belongs to the binding-protein-dependent transport system permease family
JHS88_23175	COG0826	peptidase U32
JHS88_23200	COG1653	transport
JHS88_23205	COG0019	diaminopimelate decarboxylase activity
JHS88_23210	COG4264	IucA IucC family
JHS88_23235	COG4772	TonB-dependent receptor
JHS88_23240	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
JHS88_23245	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JHS88_23250	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JHS88_23255	COG1120	ATPase activity
JHS88_23260	COG0840	transmembrane signaling receptor activity
JHS88_23265	COG0612	Peptidase, M16
JHS88_23275	COG0739	heme binding
JHS88_23300	COG4580	involved in the transport of maltose and maltodextrins
JHS88_23320	COG2356	endonuclease I
JHS88_23340	COG1982	Orn Lys Arg decarboxylase major
JHS88_23345	COG0531	amino acid
JHS88_23355	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
JHS88_23365	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
JHS88_23370	COG1162	GTPase activity
JHS88_23385	COG1999	signal sequence binding
JHS88_23400	COG2909	trisaccharide binding
JHS88_23405	COG0058	SHG alpha-glucan phosphorylase activity
JHS88_23410	COG1640	4-alpha-glucanotransferase
JHS88_23415	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
JHS88_23420	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JHS88_23425	COG0366	Alpha amylase catalytic
JHS88_23440	COG3366	ferrous iron transmembrane transporter activity
JHS88_23445	COG0700	Nucleoside recognition
JHS88_23450	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JHS88_23455	COG3339	Conserved Protein
JHS88_23460	COG1301	dicarboxylic acid transport
JHS88_23470	COG0583	DNA-binding transcription factor activity
JHS88_23485	COG3206	protein involved in exopolysaccharide biosynthesis
JHS88_23485	COG0489	protein tyrosine kinase activity
JHS88_23505	COG2095	MarC family integral membrane protein
JHS88_23510	COG4667	esterase of the alpha-beta hydrolase superfamily
JHS88_23515	COG3397	chitin binding
JHS88_23520	COG1054	Belongs to the UPF0176 family
JHS88_23535	COG1686	Belongs to the peptidase S11 family
JHS88_23560	COG0583	DNA-binding transcription factor activity
JHS88_23565	COG4628	conserved protein (DUF2132)
JHS88_23575	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JHS88_23585	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
JHS88_23590	COG0628	permease
JHS88_23630	COG2814	Major facilitator Superfamily
JHS88_23645	COG0454	-acetyltransferase
JHS88_23655	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
JHS88_23660	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
JHS88_23665	COG1882	Formate acetyltransferase
JHS88_23695	COG1360	Flagellar Motor Protein
JHS88_23700	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
JHS88_23705	COG1191	sigma factor activity
JHS88_23710	COG1580	Controls the rotational direction of flagella during chemotaxis
JHS88_23725	COG1516	flagellar protein fliS
JHS88_23730	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
JHS88_23740	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JHS88_23755	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
JHS88_23765	COG1987	bacterial-type flagellum assembly
JHS88_23845	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
JHS88_23865	COG0346	lactoylglutathione lyase activity
JHS88_23890	COG0745	RESPONSE REGULATOR receiver
JHS88_23910	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JHS88_23920	COG0156	8-amino-7-oxononanoate synthase activity
JHS88_23925	COG1063	alcohol dehydrogenase
JHS88_23965	COG2842	Transposition protein
JHS88_23990	COG3081	Nucleoid-associated protein
JHS88_24015	COG3012	SEC-C Motif Domain Protein
JHS88_24230	COG2885	chlorophyll binding
JHS88_24440	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
JHS88_24550	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
JHS88_24580	COG2948	multi-organism process
JHS88_24590	COG3504	Conjugal transfer protein
JHS88_24610	COG4962	Type ii secretion system protein e
JHS88_24620	COG3451	type IV secretory pathway VirB4
JHS88_24625	COG5268	conjugation
JHS88_24655	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
JHS88_24675	COG1192	Involved in chromosome partitioning
JHS88_24875	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
JHS88_24875	COG2885	chlorophyll binding
JHS88_24880	COG5492	domain, Protein
JHS88_24880	COG4932	domain protein
JHS88_24905	COG3547	Transposase (IS116 IS110 IS902 family)
JHS88_24920	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
JHS88_24925	COG1757	Na H antiporter
JHS88_24930	COG1609	Transcriptional regulator
JHS88_24955	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
JHS88_24985	COG4115	mRNA cleavage
JHS88_24990	COG2161	toxin-antitoxin pair type II binding
JHS88_25060	COG1396	sequence-specific DNA binding
JHS88_25100	COG3504	Conjugal transfer protein
JHS88_25130	COG2207	Transcriptional regulator
JHS88_25145	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JHS88_25155	COG0747	negative chemotaxis
JHS88_25175	COG0804	urea catabolic process
JHS88_25220	COG2161	toxin-antitoxin pair type II binding
JHS88_25225	COG4115	mRNA cleavage
JHS88_25255	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
JHS88_25280	COG1609	Transcriptional regulator
JHS88_25285	COG1757	Na H antiporter
JHS88_25290	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
JHS88_25305	COG3547	Transposase (IS116 IS110 IS902 family)
JHS88_25330	COG4932	domain protein
JHS88_25330	COG5492	domain, Protein
JHS88_25335	COG2885	chlorophyll binding
JHS88_25335	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
JHS88_25485	COG2948	multi-organism process
JHS88_25490	COG3504	Conjugal transfer protein
JHS88_25530	COG1396	sequence-specific DNA binding