locus-tag class description H5404_00035 PF00005 ABC transporter H5404_00040 PF01032 FecCD transport family H5404_00045 PF01032 FecCD transport family H5404_00050 PF01497 Periplasmic binding protein H5404_00055 PF00593 TonB dependent receptor H5404_00055 PF07660 Secretin and TonB N terminus short domain H5404_00055 PF07715 TonB-dependent Receptor Plug Domain H5404_00060 PF07715 TonB-dependent Receptor Plug Domain H5404_00060 PF00593 TonB dependent receptor H5404_00065 PF00206 Lyase H5404_00065 PF02655 ATP-grasp domain H5404_00070 PF04183 IucA / IucC family H5404_00070 PF06276 Ferric iron reductase FhuF-like transporter H5404_00080 PF04183 IucA / IucC family H5404_00080 PF06276 Ferric iron reductase FhuF-like transporter H5404_00085 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain H5404_00085 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain H5404_00090 PF01547 Bacterial extracellular solute-binding protein H5404_00095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_00095 PF08521 Two-component sensor kinase N-terminal H5404_00095 PF00512 His Kinase A (phospho-acceptor) domain H5404_00100 PF00072 Response regulator receiver domain H5404_00100 PF00486 Transcriptional regulatory protein, C terminal H5404_00105 PF02378 Phosphotransferase system, EIIC H5404_00105 PF00367 phosphotransferase system, EIIB H5404_00115 PF01136 Peptidase family U32 H5404_00120 PF02653 Branched-chain amino acid transport system / permease component H5404_00125 PF00005 ABC transporter H5404_00130 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family H5404_00135 PF00370 FGGY family of carbohydrate kinases, N-terminal domain H5404_00135 PF02782 FGGY family of carbohydrate kinases, C-terminal domain H5404_00140 PF00596 Class II Aldolase and Adducin N-terminal domain H5404_00145 PF11762 L-arabinose isomerase C-terminal domain H5404_00145 PF02610 L-arabinose isomerase H5404_00155 PF02311 AraC-like ligand binding domain H5404_00155 PF12833 Helix-turn-helix domain H5404_00170 PF02566 OsmC-like protein H5404_00175 PF01047 MarR family H5404_00180 PF10417 C-terminal domain of 1-Cys peroxiredoxin H5404_00180 PF00578 AhpC/TSA family H5404_00185 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5404_00185 PF13192 Thioredoxin domain H5404_00210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_00210 PF03466 LysR substrate binding domain H5404_00215 PF12833 Helix-turn-helix domain H5404_00215 PF01965 DJ-1/PfpI family H5404_00220 PF08281 Sigma-70, region 4 H5404_00220 PF04542 Sigma-70 region 2 H5404_00230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_00230 PF00672 HAMP domain H5404_00230 PF02743 Cache domain H5404_00235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_00235 PF03466 LysR substrate binding domain H5404_00240 PF11975 Family 4 glycosyl hydrolase C-terminal domain H5404_00240 PF02056 Family 4 glycosyl hydrolase H5404_00255 PF03475 3-alpha domain H5404_00255 PF03473 MOSC domain H5404_00260 PF00271 Helicase conserved C-terminal domain H5404_00260 PF00270 DEAD/DEAH box helicase H5404_00275 PF06719 AraC-type transcriptional regulator N-terminus H5404_00275 PF12833 Helix-turn-helix domain H5404_00285 PF00005 ABC transporter H5404_00285 PF00664 ABC transporter transmembrane region H5404_00295 PF01037 Lrp/AsnC ligand binding domain H5404_00330 PF00474 Sodium:solute symporter family H5404_00340 PF18327 Proline utilization A proline dehydrogenase N-terminal domain H5404_00340 PF01619 Proline dehydrogenase H5404_00340 PF00171 Aldehyde dehydrogenase family H5404_00340 PF14850 DNA-binding domain of Proline dehydrogenase H5404_00345 PF12833 Helix-turn-helix domain H5404_00355 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region H5404_00355 PF01243 Pyridoxamine 5'-phosphate oxidase H5404_00365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_00365 PF02743 Cache domain H5404_00365 PF00512 His Kinase A (phospho-acceptor) domain H5404_00370 PF00158 Sigma-54 interaction domain H5404_00370 PF00072 Response regulator receiver domain H5404_00370 PF02954 Bacterial regulatory protein, Fis family H5404_00375 PF00529 HlyD membrane-fusion protein of T1SS H5404_00390 PF03412 Peptidase C39 family H5404_00390 PF00005 ABC transporter H5404_00390 PF00664 ABC transporter transmembrane region H5404_00400 PF03358 NADPH-dependent FMN reductase H5404_00405 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle H5404_00410 PF00246 Zinc carboxypeptidase H5404_00415 PF01380 SIS domain H5404_00415 PF01418 Helix-turn-helix domain, rpiR family H5404_00420 PF01380 SIS domain H5404_00425 PF00367 phosphotransferase system, EIIB H5404_00425 PF02378 Phosphotransferase system, EIIC H5404_00430 PF00267 Gram-negative porin H5404_00435 PF03575 Peptidase family S51 H5404_00440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_00440 PF03466 LysR substrate binding domain H5404_00445 PF00132 Bacterial transferase hexapeptide (six repeats) H5404_00455 PF05127 Helicase H5404_00455 PF13718 GNAT acetyltransferase 2 H5404_00460 PF02195 ParB-like nuclease domain H5404_00460 PF08775 ParB family H5404_00465 PF13614 AAA domain H5404_00465 PF18607 ParA helix turn helix domain H5404_00480 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H5404_00480 PF00005 ABC transporter H5404_00485 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H5404_00485 PF00005 ABC transporter H5404_00495 PF08719 Domain of unknown function (DUF1768) H5404_00495 PF00925 GTP cyclohydrolase II H5404_00505 PF00512 His Kinase A (phospho-acceptor) domain H5404_00505 PF01627 Hpt domain H5404_00505 PF00072 Response regulator receiver domain H5404_00505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_00505 PF17149 Periplasmic sensor domain found in signal transduction proteins H5404_00505 PF00672 HAMP domain H5404_00515 PF01709 Transcriptional regulator H5404_00520 PF01098 Cell cycle protein H5404_00530 PF00005 ABC transporter H5404_00550 PF06580 Histidine kinase H5404_00550 PF13492 GAF domain H5404_00550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_00550 PF07694 5TMR of 5TMR-LYT H5404_00555 PF00072 Response regulator receiver domain H5404_00555 PF04397 LytTr DNA-binding domain H5404_00565 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD H5404_00570 PF17200 Single Cache domain 2 H5404_00570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_00570 PF00672 HAMP domain H5404_00585 PF00132 Bacterial transferase hexapeptide (six repeats) H5404_00590 PF03616 Sodium/glutamate symporter H5404_00600 PF00005 ABC transporter H5404_00605 PF00392 Bacterial regulatory proteins, gntR family H5404_00605 PF00155 Aminotransferase class I and II H5404_00610 PF03616 Sodium/glutamate symporter H5404_00620 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase H5404_00635 PF03466 LysR substrate binding domain H5404_00635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_00640 PF17954 Quercetinase C-terminal cupin domain H5404_00640 PF02678 Pirin H5404_00645 PF07681 DoxX H5404_00655 PF06029 AlkA N-terminal domain H5404_00655 PF00730 HhH-GPD superfamily base excision DNA repair protein H5404_00660 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain H5404_00660 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain H5404_00670 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 H5404_00680 PF03600 Citrate transporter H5404_00700 PF08329 Chitinase A, N-terminal domain H5404_00700 PF00704 Glycosyl hydrolases family 18 H5404_00710 PF06865 Pyrimidine/purine nucleoside phosphorylase H5404_00720 PF00990 Diguanylate cyclase, GGDEF domain H5404_00720 PF00563 EAL domain H5404_00725 PF01554 MatE H5404_00730 PF00849 RNA pseudouridylate synthase H5404_00745 PF03466 LysR substrate binding domain H5404_00745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_00760 PF00990 Diguanylate cyclase, GGDEF domain H5404_00760 PF17152 Periplasmic sensor domain H5404_00770 PF00756 Putative esterase H5404_00775 PF00107 Zinc-binding dehydrogenase H5404_00775 PF08240 Alcohol dehydrogenase GroES-like domain H5404_00780 PF00797 N-acetyltransferase H5404_00785 PF03466 LysR substrate binding domain H5404_00785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_00800 PF09339 IclR helix-turn-helix domain H5404_00800 PF01614 Bacterial transcriptional regulator H5404_00810 PF10688 Bacterial inner membrane protein H5404_00815 PF07883 Cupin domain H5404_00830 PF00294 pfkB family carbohydrate kinase H5404_00835 PF01081 KDPG and KHG aldolase H5404_00850 PF13229 Right handed beta helix region H5404_00855 PF00474 Sodium:solute symporter family H5404_00860 PF14583 Oligogalacturonate lyase H5404_00865 PF08021 Siderophore-interacting FAD-binding domain H5404_00865 PF04954 Siderophore-interacting protein H5404_00870 PF01810 LysE type translocator H5404_00875 PF01037 Lrp/AsnC ligand binding domain H5404_00880 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading H5404_00880 PF18416 N-acetylglucosamine binding protein domain 2 H5404_00895 PF13599 Pentapeptide repeats (9 copies) H5404_00900 PF03922 OmpW family H5404_00905 PF13533 Biotin-lipoyl like H5404_00910 PF07690 Major Facilitator Superfamily H5404_00920 PF12706 Beta-lactamase superfamily domain H5404_00930 PF01204 Trehalase H5404_00935 PF01661 Macro domain H5404_00940 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H5404_00945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_00945 PF03466 LysR substrate binding domain H5404_00955 PF03466 LysR substrate binding domain H5404_00955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_00970 PF13419 Haloacid dehalogenase-like hydrolase H5404_00995 PF13556 PucR C-terminal helix-turn-helix domain H5404_00995 PF17853 GGDEF-like domain H5404_00995 PF05651 Putative sugar diacid recognition H5404_01000 PF02447 GntP family permease H5404_01005 PF02595 Glycerate kinase family H5404_01010 PF00155 Aminotransferase class I and II H5404_01010 PF00392 Bacterial regulatory proteins, gntR family H5404_01030 PF00583 Acetyltransferase (GNAT) family H5404_01055 PF03264 NapC/NirT cytochrome c family, N-terminal region H5404_01060 PF01568 Molydopterin dinucleotide binding domain H5404_01060 PF00384 Molybdopterin oxidoreductase H5404_01060 PF18364 Molybdopterin oxidoreductase N-terminal domain H5404_01070 PF02581 Thiamine monophosphate synthase H5404_01075 PF02110 Hydroxyethylthiazole kinase family H5404_01080 PF03070 TENA/THI-4/PQQC family H5404_01085 PF09084 NMT1/THI5 like H5404_01090 PF00528 Binding-protein-dependent transport system inner membrane component H5404_01095 PF00005 ABC transporter H5404_01100 PF08543 Phosphomethylpyrimidine kinase H5404_01105 PF01523 Putative modulator of DNA gyrase H5404_01110 PF01523 Putative modulator of DNA gyrase H5404_01115 PF04013 Putative SAM-dependent RNA methyltransferase H5404_01165 PF10928 Protein of unknown function (DUF2810) H5404_01170 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain H5404_01170 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain H5404_01180 PF03009 Glycerophosphoryl diester phosphodiesterase family H5404_01185 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain H5404_01185 PF00056 lactate/malate dehydrogenase, NAD binding domain H5404_01190 PF00072 Response regulator receiver domain H5404_01190 PF00486 Transcriptional regulatory protein, C terminal H5404_01195 PF16750 Sensor domain of 2-component histidine kinase H5404_01195 PF00512 His Kinase A (phospho-acceptor) domain H5404_01195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_01195 PF00672 HAMP domain H5404_01200 PF00593 TonB dependent receptor H5404_01200 PF07715 TonB-dependent Receptor Plug Domain H5404_01210 PF01618 MotA/TolQ/ExbB proton channel family H5404_01215 PF01618 MotA/TolQ/ExbB proton channel family H5404_01220 PF02472 Biopolymer transport protein ExbD/TolR H5404_01260 PF01297 Zinc-uptake complex component A periplasmic H5404_01265 PF00005 ABC transporter H5404_01270 PF00950 ABC 3 transport family H5404_01285 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain H5404_01285 PF00326 Prolyl oligopeptidase family H5404_01290 PF07690 Major Facilitator Superfamily H5404_01295 PF00491 Arginase family H5404_01300 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain H5404_01300 PF17810 Arginine decarboxylase helical bundle domain H5404_01300 PF17944 Arginine decarboxylase C-terminal helical extension H5404_01305 PF00753 Metallo-beta-lactamase superfamily H5404_01310 PF18030 RimK PreATP-grasp domain H5404_01310 PF08443 RimK-like ATP-grasp domain H5404_01315 PF18030 RimK PreATP-grasp domain H5404_01315 PF08443 RimK-like ATP-grasp domain H5404_01325 PF03466 LysR substrate binding domain H5404_01325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_01350 PF00232 Glycosyl hydrolase family 1 H5404_01355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_01355 PF00512 His Kinase A (phospho-acceptor) domain H5404_01355 PF02743 Cache domain H5404_01360 PF00158 Sigma-54 interaction domain H5404_01360 PF00072 Response regulator receiver domain H5404_01360 PF02954 Bacterial regulatory protein, Fis family H5404_01365 PF00990 Diguanylate cyclase, GGDEF domain H5404_01365 PF08448 PAS fold H5404_01370 PF05525 Branched-chain amino acid transport protein H5404_01385 PF01266 FAD dependent oxidoreductase H5404_01395 PF01212 Beta-eliminating lyase H5404_01410 PF07662 Na+ dependent nucleoside transporter C-terminus H5404_01410 PF07670 Nucleoside recognition H5404_01410 PF01773 Na+ dependent nucleoside transporter N-terminus H5404_01420 PF13532 2OG-Fe(II) oxygenase superfamily H5404_01425 PF00990 Diguanylate cyclase, GGDEF domain H5404_01425 PF05230 MASE2 domain H5404_01430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_01430 PF00672 HAMP domain H5404_01430 PF12729 Four helix bundle sensory module for signal transduction H5404_01445 PF00990 Diguanylate cyclase, GGDEF domain H5404_01450 PF03441 FAD binding domain of DNA photolyase H5404_01450 PF00875 DNA photolyase H5404_01455 PF04244 Deoxyribodipyrimidine photo-lyase-related protein H5404_01460 PF00919 Uncharacterized protein family UPF0004 H5404_01460 PF04055 Radical SAM superfamily H5404_01470 PF01625 Peptide methionine sulfoxide reductase H5404_01470 PF01641 SelR domain H5404_01475 PF02566 OsmC-like protein H5404_01505 PF02566 OsmC-like protein H5404_01510 PF14602 Hexapeptide repeat of succinyl-transferase H5404_01510 PF12464 Maltose acetyltransferase H5404_01545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_01545 PF03466 LysR substrate binding domain H5404_01550 PF13419 Haloacid dehalogenase-like hydrolase H5404_01565 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) H5404_01570 PF00194 Eukaryotic-type carbonic anhydrase H5404_01575 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) H5404_01580 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H5404_01585 PF00005 ABC transporter H5404_01585 PF02687 FtsX-like permease family H5404_01585 PF12704 MacB-like periplasmic core domain H5404_01590 PF02321 Outer membrane efflux protein H5404_01595 PF00657 GDSL-like Lipase/Acylhydrolase H5404_01600 PF00082 Subtilase family H5404_01600 PF05922 Peptidase inhibitor I9 H5404_01610 PF03611 PTS system sugar-specific permease component H5404_01620 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 H5404_01625 PF00356 Bacterial regulatory proteins, lacI family H5404_01630 PF13419 Haloacid dehalogenase-like hydrolase H5404_01635 PF00202 Aminotransferase class-III H5404_01640 PF00266 Aminotransferase class-V H5404_01655 PF00005 ABC transporter H5404_01660 PF00528 Binding-protein-dependent transport system inner membrane component H5404_01665 PF00392 Bacterial regulatory proteins, gntR family H5404_01665 PF07702 UTRA domain H5404_01680 PF04393 Protein of unknown function (DUF535) H5404_01685 PF01266 FAD dependent oxidoreductase H5404_01690 PF18027 Cytosolic carboxypeptidase N-terminal domain H5404_01690 PF00246 Zinc carboxypeptidase H5404_01695 PF01389 OmpA-like transmembrane domain H5404_01695 PF00691 OmpA family H5404_01700 PF03466 LysR substrate binding domain H5404_01700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_01710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_01710 PF03466 LysR substrate binding domain H5404_01720 PF00854 POT family H5404_01725 PF03313 Serine dehydratase alpha chain H5404_01725 PF03315 Serine dehydratase beta chain H5404_01745 PF08264 Anticodon-binding domain of tRNA H5404_01745 PF00133 tRNA synthetases class I (I, L, M and V) H5404_01750 PF01464 Transglycosylase SLT domain H5404_01770 PF00460 Flagella basal body rod protein H5404_01775 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H5404_01775 PF00460 Flagella basal body rod protein H5404_01780 PF13860 FlgD Ig-like domain H5404_01780 PF03963 Flagellar hook capping protein - N-terminal region H5404_01780 PF13861 FlgD Tudor-like domain H5404_01785 PF07559 Flagellar basal body protein FlaE H5404_01785 PF00460 Flagella basal body rod protein H5404_01785 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H5404_01790 PF00460 Flagella basal body rod protein H5404_01790 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H5404_01795 PF00460 Flagella basal body rod protein H5404_01795 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H5404_01800 PF02107 Flagellar L-ring protein H5404_01805 PF02119 Flagellar P-ring protein H5404_01810 PF10135 Rod binding protein H5404_01810 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase H5404_01815 PF00460 Flagella basal body rod protein H5404_01815 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H5404_01820 PF00669 Bacterial flagellin N-terminal helical region H5404_01840 PF01070 FMN-dependent dehydrogenase H5404_01865 PF00581 Rhodanese-like domain H5404_01870 PF00166 Chaperonin 10 Kd subunit H5404_01875 PF00118 TCP-1/cpn60 chaperonin family H5404_01890 PF01810 LysE type translocator H5404_01895 PF03466 LysR substrate binding domain H5404_01895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_01910 PF08359 YsiA-like protein, C-terminal region H5404_01910 PF00440 Bacterial regulatory proteins, tetR family H5404_01920 PF02872 5'-nucleotidase, C-terminal domain H5404_01920 PF00149 Calcineurin-like phosphoesterase H5404_01925 PF03060 Nitronate monooxygenase H5404_01940 PF01625 Peptide methionine sulfoxide reductase H5404_01940 PF01641 SelR domain H5404_01945 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H5404_01950 PF08220 DeoR-like helix-turn-helix domain H5404_01950 PF00455 DeoR C terminal sensor domain H5404_01960 PF00199 Catalase H5404_01960 PF06628 Catalase-related immune-responsive H5404_01970 PF00857 Isochorismatase family H5404_01980 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family H5404_01980 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain H5404_02000 PF03466 LysR substrate binding domain H5404_02000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_02005 PF00691 OmpA family H5404_02005 PF01389 OmpA-like transmembrane domain H5404_02015 PF06629 MltA-interacting protein MipA H5404_02020 PF17185 NlpE C-terminal OB domain H5404_02020 PF04170 NlpE N-terminal domain H5404_02025 PF02001 Protein of unknown function DUF134 H5404_02050 PF00679 Elongation factor G C-terminus H5404_02050 PF14492 Elongation Factor G, domain II H5404_02050 PF03144 Elongation factor Tu domain 2 H5404_02050 PF00009 Elongation factor Tu GTP binding domain H5404_02050 PF03764 Elongation factor G, domain IV H5404_02055 PF13378 Enolase C-terminal domain-like H5404_02055 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain H5404_02065 PF03466 LysR substrate binding domain H5404_02065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_02075 PF00376 MerR family regulatory protein H5404_02075 PF09278 MerR, DNA binding H5404_02100 PF13091 PLD-like domain H5404_02105 PF13533 Biotin-lipoyl like H5404_02110 PF00873 AcrB/AcrD/AcrF family H5404_02130 PF00005 ABC transporter H5404_02130 PF08402 TOBE domain H5404_02155 PF00392 Bacterial regulatory proteins, gntR family H5404_02155 PF07702 UTRA domain H5404_02160 PF02028 BCCT, betaine/carnitine/choline family transporter H5404_02165 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 H5404_02165 PF02837 Glycosyl hydrolases family 2, sugar binding domain H5404_02165 PF02836 Glycosyl hydrolases family 2, TIM barrel domain H5404_02165 PF00703 Glycosyl hydrolases family 2 H5404_02170 PF00196 Bacterial regulatory proteins, luxR family H5404_02180 PF07694 5TMR of 5TMR-LYT H5404_02180 PF00990 Diguanylate cyclase, GGDEF domain H5404_02195 PF00873 AcrB/AcrD/AcrF family H5404_02200 PF13533 Biotin-lipoyl like H5404_02205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_02205 PF03466 LysR substrate binding domain H5404_02215 PF13416 Bacterial extracellular solute-binding protein H5404_02220 PF00579 tRNA synthetases class I (W and Y) H5404_02235 PF00391 PEP-utilising enzyme, mobile domain H5404_02235 PF02896 PEP-utilising enzyme, TIM barrel domain H5404_02235 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain H5404_02240 PF03618 Kinase/pyrophosphorylase H5404_02245 PF00710 Asparaginase, N-terminal H5404_02245 PF17763 Glutaminase/Asparaginase C-terminal domain H5404_02250 PF00709 Adenylosuccinate synthetase H5404_02255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_02255 PF03466 LysR substrate binding domain H5404_02270 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) H5404_02275 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term H5404_02275 PF12833 Helix-turn-helix domain H5404_02290 PF00107 Zinc-binding dehydrogenase H5404_02290 PF08240 Alcohol dehydrogenase GroES-like domain H5404_02295 PF00724 NADH:flavin oxidoreductase / NADH oxidase family H5404_02305 PF03466 LysR substrate binding domain H5404_02305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_02310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_02310 PF03466 LysR substrate binding domain H5404_02320 PF00271 Helicase conserved C-terminal domain H5404_02320 PF00270 DEAD/DEAH box helicase H5404_02335 PF00535 Glycosyl transferase family 2 H5404_02360 PF00155 Aminotransferase class I and II H5404_02365 PF01497 Periplasmic binding protein H5404_02365 PF12833 Helix-turn-helix domain H5404_02395 PF05661 Protein of unknown function (DUF808) H5404_02400 PF01979 Amidohydrolase family H5404_02405 PF01679 Proteolipid membrane potential modulator H5404_02410 PF00111 2Fe-2S iron-sulfur cluster binding domain H5404_02410 PF03476 MOSC N-terminal beta barrel domain H5404_02410 PF03473 MOSC domain H5404_02410 PF03476 MOSC N-terminal beta barrel domain H5404_02410 PF00111 2Fe-2S iron-sulfur cluster binding domain H5404_02410 PF03473 MOSC domain H5404_02415 PF02540 NAD synthase H5404_02420 PF01467 Cytidylyltransferase-like H5404_02460 PF00005 ABC transporter H5404_02465 PF01032 FecCD transport family H5404_02475 PF02472 Biopolymer transport protein ExbD/TolR H5404_02480 PF01618 MotA/TolQ/ExbB proton channel family H5404_02485 PF03544 Gram-negative bacterial TonB protein C-terminal H5404_02490 PF04055 Radical SAM superfamily H5404_02495 PF06228 Haem utilisation ChuX/HutX H5404_02500 PF01243 Pyridoxamine 5'-phosphate oxidase H5404_02510 PF00072 Response regulator receiver domain H5404_02510 PF01584 CheW-like domain H5404_02530 PF00239 Resolvase, N terminal domain H5404_02530 PF02796 Helix-turn-helix domain of resolvase H5404_02535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_02535 PF00512 His Kinase A (phospho-acceptor) domain H5404_02550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_02550 PF03466 LysR substrate binding domain H5404_02555 PF07690 Major Facilitator Superfamily H5404_02570 PF00682 HMGL-like H5404_02570 PF08502 LeuA allosteric (dimerisation) domain H5404_02590 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) H5404_02595 PF00082 Subtilase family H5404_02615 PF00141 Peroxidase H5404_02620 PF00210 Ferritin-like domain H5404_02625 PF03466 LysR substrate binding domain H5404_02625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_02635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_02635 PF03466 LysR substrate binding domain H5404_02640 PF00884 Sulfatase H5404_02645 PF04055 Radical SAM superfamily H5404_02645 PF13186 Iron-sulfur cluster-binding domain H5404_02660 PF08453 Peptidase family M9 N-terminal H5404_02660 PF01752 Collagenase H5404_02660 PF04151 Bacterial pre-peptidase C-terminal domain H5404_02670 PF00128 Alpha amylase, catalytic domain H5404_02685 PF02254 TrkA-N domain H5404_02685 PF00999 Sodium/hydrogen exchanger family H5404_02690 PF02525 Flavodoxin-like fold H5404_02695 PF00582 Universal stress protein family H5404_02700 PF12848 ABC transporter H5404_02700 PF00005 ABC transporter H5404_02705 PF00326 Prolyl oligopeptidase family H5404_02705 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain H5404_02715 PF13533 Biotin-lipoyl like H5404_02720 PF00873 AcrB/AcrD/AcrF family H5404_02725 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) H5404_02735 PF13302 Acetyltransferase (GNAT) domain H5404_02745 PF00990 Diguanylate cyclase, GGDEF domain H5404_02765 PF00873 AcrB/AcrD/AcrF family H5404_02785 PF01568 Molydopterin dinucleotide binding domain H5404_02785 PF00384 Molybdopterin oxidoreductase H5404_02785 PF04879 Molybdopterin oxidoreductase Fe4S4 domain H5404_02785 PF12838 4Fe-4S dicluster domain H5404_02785 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region H5404_02805 PF00005 ABC transporter H5404_02815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_02815 PF00672 HAMP domain H5404_02820 PF10282 Lactonase, 7-bladed beta-propeller H5404_02825 PF02567 Phenazine biosynthesis-like protein H5404_02830 PF01161 Phosphatidylethanolamine-binding protein H5404_02840 PF01758 Sodium Bile acid symporter family H5404_02855 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 H5404_02860 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit H5404_02860 PF02378 Phosphotransferase system, EIIC H5404_02865 PF08240 Alcohol dehydrogenase GroES-like domain H5404_02865 PF00107 Zinc-binding dehydrogenase H5404_02905 PF01555 DNA methylase H5404_03120 PF13401 AAA domain H5404_03120 PF09077 Mu B transposition protein, C terminal H5404_03155 PF03222 Tryptophan/tyrosine permease family H5404_03165 PF00672 HAMP domain H5404_03165 PF02743 Cache domain H5404_03165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_03170 PF07670 Nucleoside recognition H5404_03190 PF08525 Opacity-associated protein A N-terminal motif H5404_03190 PF01551 Peptidase family M23 H5404_03190 PF01476 LysM domain H5404_03200 PF03466 LysR substrate binding domain H5404_03200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_03205 PF07690 Major Facilitator Superfamily H5404_03215 PF00462 Glutaredoxin H5404_03220 PF00892 EamA-like transporter family H5404_03225 PF00267 Gram-negative porin H5404_03235 PF01557 Fumarylacetoacetate (FAA) hydrolase family H5404_03250 PF12833 Helix-turn-helix domain H5404_03255 PF01810 LysE type translocator H5404_03265 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I H5404_03265 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III H5404_03265 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II H5404_03265 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain H5404_03270 PF00116 Cytochrome C oxidase subunit II, periplasmic domain H5404_03270 PF02790 Cytochrome C oxidase subunit II, transmembrane domain H5404_03275 PF00115 Cytochrome C and Quinol oxidase polypeptide I H5404_03280 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 H5404_03285 PF00510 Cytochrome c oxidase subunit III H5404_03305 PF02628 Cytochrome oxidase assembly protein H5404_03310 PF01040 UbiA prenyltransferase family H5404_03315 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase H5404_03315 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase H5404_03345 PF00313 'Cold-shock' DNA-binding domain H5404_03350 PF03889 Alternative ribosome-rescue factor A H5404_03355 PF13426 PAS domain H5404_03355 PF08447 PAS fold H5404_03355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_03360 PF00990 Diguanylate cyclase, GGDEF domain H5404_03375 PF00005 ABC transporter H5404_03375 PF02687 FtsX-like permease family H5404_03375 PF12704 MacB-like periplasmic core domain H5404_03380 PF02687 FtsX-like permease family H5404_03380 PF00005 ABC transporter H5404_03380 PF12704 MacB-like periplasmic core domain H5404_03390 PF17200 Single Cache domain 2 H5404_03390 PF00672 HAMP domain H5404_03390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_03395 PF00210 Ferritin-like domain H5404_03405 PF07995 Glucose / Sorbosone dehydrogenase H5404_03410 PF00465 Iron-containing alcohol dehydrogenase H5404_03425 PF00892 EamA-like transporter family H5404_03450 PF03466 LysR substrate binding domain H5404_03450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_03460 PF00501 AMP-binding enzyme H5404_03460 PF13193 AMP-binding enzyme C-terminal domain H5404_03465 PF00351 Biopterin-dependent aromatic amino acid hydroxylase H5404_03470 PF01329 Pterin 4 alpha carbinolamine dehydratase H5404_03490 PF12843 Putative quorum-sensing-regulated virulence factor H5404_03495 PF00271 Helicase conserved C-terminal domain H5404_03495 PF00270 DEAD/DEAH box helicase H5404_03500 PF09905 DNA-binding protein VF530 H5404_03505 PF00291 Pyridoxal-phosphate dependent enzyme H5404_03515 PF01470 Pyroglutamyl peptidase H5404_03525 PF07683 Cobalamin synthesis protein cobW C-terminal domain H5404_03525 PF02492 CobW/HypB/UreG, nucleotide-binding domain H5404_03530 PF00271 Helicase conserved C-terminal domain H5404_03530 PF00270 DEAD/DEAH box helicase H5404_03550 PF12792 CSS motif domain associated with EAL H5404_03550 PF00563 EAL domain H5404_03555 PF00005 ABC transporter H5404_03560 PF00672 HAMP domain H5404_03560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_03560 PF12729 Four helix bundle sensory module for signal transduction H5404_03570 PF03466 LysR substrate binding domain H5404_03570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_03575 PF00884 Sulfatase H5404_03580 PF13186 Iron-sulfur cluster-binding domain H5404_03580 PF04055 Radical SAM superfamily H5404_03585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_03585 PF03466 LysR substrate binding domain H5404_03595 PF01575 MaoC like domain H5404_03600 PF12849 PBP superfamily domain H5404_03610 PF12833 Helix-turn-helix domain H5404_03615 PF00575 S1 RNA binding domain H5404_03615 PF00773 RNB domain H5404_03615 PF08206 Ribonuclease B OB domain H5404_03620 PF00271 Helicase conserved C-terminal domain H5404_03620 PF03880 DbpA RNA binding domain H5404_03620 PF00270 DEAD/DEAH box helicase H5404_03625 PF13426 PAS domain H5404_03625 PF00990 Diguanylate cyclase, GGDEF domain H5404_03625 PF00563 EAL domain H5404_03630 PF00871 Acetokinase family H5404_03635 PF13426 PAS domain H5404_03635 PF08447 PAS fold H5404_03635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_03645 PF10063 Uncharacterized integral membrane protein (DUF2301) H5404_03650 PF00682 HMGL-like H5404_03655 PF00378 Enoyl-CoA hydratase/isomerase H5404_03660 PF01039 Carboxyl transferase domain H5404_03665 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H5404_03665 PF02770 Acyl-CoA dehydrogenase, middle domain H5404_03665 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H5404_03670 PF09278 MerR, DNA binding H5404_03670 PF00376 MerR family regulatory protein H5404_03675 PF00108 Thiolase, N-terminal domain H5404_03675 PF02803 Thiolase, C-terminal domain H5404_03680 PF00171 Aldehyde dehydrogenase family H5404_03685 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H5404_03685 PF02770 Acyl-CoA dehydrogenase, middle domain H5404_03685 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H5404_03690 PF00378 Enoyl-CoA hydratase/isomerase H5404_03695 PF00378 Enoyl-CoA hydratase/isomerase H5404_03700 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase H5404_03700 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase H5404_03710 PF06481 COX Aromatic Rich Motif H5404_03710 PF00116 Cytochrome C oxidase subunit II, periplasmic domain H5404_03715 PF00115 Cytochrome C and Quinol oxidase polypeptide I H5404_03720 PF00510 Cytochrome c oxidase subunit III H5404_03730 PF01040 UbiA prenyltransferase family H5404_03735 PF00724 NADH:flavin oxidoreductase / NADH oxidase family H5404_03740 PF08031 Berberine and berberine like H5404_03740 PF01565 FAD binding domain H5404_03745 PF00005 ABC transporter H5404_03750 PF00497 Bacterial extracellular solute-binding proteins, family 3 H5404_03755 PF00528 Binding-protein-dependent transport system inner membrane component H5404_03760 PF00528 Binding-protein-dependent transport system inner membrane component H5404_03770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_03770 PF03466 LysR substrate binding domain H5404_03775 PF02798 Glutathione S-transferase, N-terminal domain H5404_03775 PF00043 Glutathione S-transferase, C-terminal domain H5404_03785 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) H5404_03785 PF00364 Biotin-requiring enzyme H5404_03785 PF02817 e3 binding domain H5404_03790 PF02779 Transketolase, pyrimidine binding domain H5404_03790 PF02780 Transketolase, C-terminal domain H5404_03795 PF00676 Dehydrogenase E1 component H5404_03810 PF00012 Hsp70 protein H5404_03815 PF04314 Copper chaperone PCu(A)C H5404_03835 PF01497 Periplasmic binding protein H5404_03840 PF01032 FecCD transport family H5404_03845 PF01032 FecCD transport family H5404_03850 PF00005 ABC transporter H5404_03855 PF13411 MerR HTH family regulatory protein H5404_03860 PF12833 Helix-turn-helix domain H5404_03865 PF07715 TonB-dependent Receptor Plug Domain H5404_03865 PF00593 TonB dependent receptor H5404_03895 PF12805 FUSC-like inner membrane protein yccS H5404_03900 PF13361 UvrD-like helicase C-terminal domain H5404_03900 PF00580 UvrD/REP helicase N-terminal domain H5404_03900 PF12462 DNA helicase IV / RNA helicase N terminal H5404_03905 PF02142 MGS-like domain H5404_03910 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family H5404_03915 PF00512 His Kinase A (phospho-acceptor) domain H5404_03915 PF00672 HAMP domain H5404_03915 PF01627 Hpt domain H5404_03915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_03915 PF00072 Response regulator receiver domain H5404_03930 PF00072 Response regulator receiver domain H5404_03930 PF00486 Transcriptional regulatory protein, C terminal H5404_03935 PF16385 Domain of unknown function H5404_03935 PF00884 Sulfatase H5404_03940 PF00884 Sulfatase H5404_03950 PF03466 LysR substrate binding domain H5404_03950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_03955 PF00884 Sulfatase H5404_03960 PF04055 Radical SAM superfamily H5404_03960 PF13186 Iron-sulfur cluster-binding domain H5404_03965 PF07726 ATPase family associated with various cellular activities (AAA) H5404_03965 PF17863 AAA lid domain H5404_03995 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region H5404_04000 PF03466 LysR substrate binding domain H5404_04000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_04005 PF00781 Diacylglycerol kinase catalytic domain H5404_04010 PF04076 Bacterial OB fold (BOF) protein H5404_04025 PF04055 Radical SAM superfamily H5404_04025 PF13186 Iron-sulfur cluster-binding domain H5404_04035 PF08774 VRR-NUC domain H5404_04035 PF18081 Fanconi anemia-associated nuclease SAP domain H5404_04050 PF01435 Peptidase family M48 H5404_04055 PF04011 LemA family H5404_04060 PF03606 C4-dicarboxylate anaerobic carrier H5404_04070 PF00583 Acetyltransferase (GNAT) family H5404_04070 PF00814 Glycoprotease family H5404_04080 PF00072 Response regulator receiver domain H5404_04080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_04085 PF00155 Aminotransferase class I and II H5404_04090 PF01926 50S ribosome-binding GTPase H5404_04100 PF01752 Collagenase H5404_04100 PF08453 Peptidase family M9 N-terminal H5404_04100 PF04151 Bacterial pre-peptidase C-terminal domain H5404_04110 PF12833 Helix-turn-helix domain H5404_04115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_04115 PF03466 LysR substrate binding domain H5404_04135 PF00263 Bacterial type II and III secretion system protein H5404_04135 PF13629 Pilus formation protein N terminal region H5404_04135 PF04972 BON domain H5404_04150 PF00437 Type II/IV secretion system protein H5404_04185 PF00691 OmpA family H5404_04185 PF05736 OprF membrane domain H5404_04195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_04195 PF03466 LysR substrate binding domain H5404_04200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_04200 PF03466 LysR substrate binding domain H5404_04210 PF00072 Response regulator receiver domain H5404_04210 PF09456 RcsC Alpha-Beta-Loop (ABL) H5404_04210 PF00512 His Kinase A (phospho-acceptor) domain H5404_04210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_04215 PF13188 PAS domain H5404_04215 PF03707 Bacterial signalling protein N terminal repeat H5404_04215 PF00990 Diguanylate cyclase, GGDEF domain H5404_04215 PF00563 EAL domain H5404_04220 PF00072 Response regulator receiver domain H5404_04220 PF00196 Bacterial regulatory proteins, luxR family H5404_04225 PF00990 Diguanylate cyclase, GGDEF domain H5404_04235 PF00196 Bacterial regulatory proteins, luxR family H5404_04235 PF00072 Response regulator receiver domain H5404_04255 PF00072 Response regulator receiver domain H5404_04255 PF01584 CheW-like domain H5404_04270 PF00892 EamA-like transporter family H5404_04280 PF01569 PAP2 superfamily H5404_04290 PF03413 Peptidase propeptide and YPEB domain H5404_04290 PF07504 Fungalysin/Thermolysin Propeptide Motif H5404_04290 PF02868 Thermolysin metallopeptidase, alpha-helical domain H5404_04290 PF04151 Bacterial pre-peptidase C-terminal domain H5404_04290 PF01447 Thermolysin metallopeptidase, catalytic domain H5404_04295 PF00893 Small Multidrug Resistance protein H5404_04300 PF00892 EamA-like transporter family H5404_04320 PF00171 Aldehyde dehydrogenase family H5404_04325 PF00939 Sodium:sulfate symporter transmembrane region H5404_04330 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain H5404_04330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_04330 PF00989 PAS fold H5404_04330 PF17203 Single cache domain 3 H5404_04335 PF12431 Transcriptional regulator H5404_04335 PF00072 Response regulator receiver domain H5404_04345 PF13187 4Fe-4S dicluster domain H5404_04345 PF01645 Conserved region in glutamate synthase H5404_04350 PF00141 Peroxidase H5404_04355 PF09722 Protein of unknown function (DUF2384) H5404_04365 PF01757 Acyltransferase family H5404_04375 PF00724 NADH:flavin oxidoreductase / NADH oxidase family H5404_04380 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H5404_04400 PF00571 CBS domain H5404_04400 PF01769 Divalent cation transporter H5404_04400 PF03448 MgtE intracellular N domain H5404_04420 PF01327 Polypeptide deformylase H5404_04425 PF09278 MerR, DNA binding H5404_04425 PF00376 MerR family regulatory protein H5404_04435 PF02253 Phospholipase A1 H5404_04455 PF00005 ABC transporter H5404_04455 PF00664 ABC transporter transmembrane region H5404_04465 PF00929 Exonuclease H5404_04465 PF02811 PHP domain H5404_04465 PF14579 Helix-hairpin-helix motif H5404_04465 PF17657 Bacterial DNA polymerase III alpha subunit finger domain H5404_04465 PF07733 Bacterial DNA polymerase III alpha NTPase domain H5404_04465 PF11490 DNA polymerase III polC-type N-terminus II H5404_04470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_04470 PF03466 LysR substrate binding domain H5404_04475 PF17848 Acetyl-coA carboxylase zinc finger domain H5404_04475 PF01039 Carboxyl transferase domain H5404_04500 PF00350 Dynamin family H5404_04505 PF13990 YjcZ-like protein H5404_04510 PF01734 Patatin-like phospholipase H5404_04515 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) H5404_04520 PF00817 impB/mucB/samB family H5404_04520 PF13438 Domain of unknown function (DUF4113) H5404_04520 PF11799 impB/mucB/samB family C-terminal domain H5404_04525 PF00717 Peptidase S24-like H5404_04560 PF01554 MatE H5404_04565 PF12833 Helix-turn-helix domain H5404_04570 PF00155 Aminotransferase class I and II H5404_04575 PF18030 RimK PreATP-grasp domain H5404_04575 PF08443 RimK-like ATP-grasp domain H5404_04585 PF04076 Bacterial OB fold (BOF) protein H5404_04590 PF07685 CobB/CobQ-like glutamine amidotransferase domain H5404_04600 PF00528 Binding-protein-dependent transport system inner membrane component H5404_04605 PF03459 TOBE domain H5404_04605 PF00005 ABC transporter H5404_04615 PF00990 Diguanylate cyclase, GGDEF domain H5404_04615 PF00563 EAL domain H5404_04615 PF00360 Phytochrome region H5404_04615 PF01590 GAF domain H5404_04625 PF00990 Diguanylate cyclase, GGDEF domain H5404_04640 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch H5404_04640 PF05222 Alanine dehydrogenase/PNT, N-terminal domain H5404_04640 PF01262 Alanine dehydrogenase/PNT, C-terminal domain H5404_04645 PF02233 NAD(P) transhydrogenase beta subunit H5404_04655 PF00072 Response regulator receiver domain H5404_04655 PF00486 Transcriptional regulatory protein, C terminal H5404_04670 PF03701 Uncharacterised protein family (UPF0181) H5404_04675 PF00582 Universal stress protein family H5404_04685 PF03466 LysR substrate binding domain H5404_04685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_04700 PF01253 Translation initiation factor SUI1 H5404_04710 PF01820 D-ala D-ala ligase N-terminus H5404_04710 PF07478 D-ala D-ala ligase C-terminus H5404_04720 PF13380 CoA binding domain H5404_04720 PF00583 Acetyltransferase (GNAT) family H5404_04720 PF13607 Succinyl-CoA ligase like flavodoxin domain H5404_04725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_04725 PF03466 LysR substrate binding domain H5404_04730 PF00593 TonB dependent receptor H5404_04730 PF07715 TonB-dependent Receptor Plug Domain H5404_04735 PF16363 GDP-mannose 4,6 dehydratase H5404_04740 PF08448 PAS fold H5404_04740 PF05231 MASE1 H5404_04740 PF00990 Diguanylate cyclase, GGDEF domain H5404_04740 PF00563 EAL domain H5404_04740 PF13426 PAS domain H5404_04740 PF08447 PAS fold H5404_04745 PF03746 LamB/YcsF family H5404_04750 PF02682 Carboxyltransferase domain, subdomain C and D H5404_04755 PF02626 Carboxyltransferase domain, subdomain A and B H5404_04770 PF00005 ABC transporter H5404_04775 PF13472 GDSL-like Lipase/Acylhydrolase family H5404_04780 PF12241 Trans-2-enoyl-CoA reductase catalytic region H5404_04780 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase H5404_04780 PF07055 Enoyl reductase FAD binding domain H5404_04785 PF00563 EAL domain H5404_04785 PF00990 Diguanylate cyclase, GGDEF domain H5404_04785 PF03707 Bacterial signalling protein N terminal repeat H5404_04785 PF13188 PAS domain H5404_04795 PF00684 DnaJ central domain H5404_04795 PF01556 DnaJ C terminal domain H5404_04795 PF00226 DnaJ domain H5404_04820 PF12793 Sugar transport-related sRNA regulator N-term H5404_04820 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle H5404_04830 PF03061 Thioesterase superfamily H5404_04845 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) H5404_04850 PF12262 Bacterial virulence factor lipase N-terminal H5404_04865 PF03741 Integral membrane protein TerC family H5404_04870 PF02872 5'-nucleotidase, C-terminal domain H5404_04870 PF00149 Calcineurin-like phosphoesterase H5404_04875 PF11398 Protein of unknown function (DUF2813) H5404_04880 PF06496 Protein of unknown function (DUF1097) H5404_04885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_04885 PF03466 LysR substrate binding domain H5404_04890 PF01226 Formate/nitrite transporter H5404_04895 PF04264 YceI-like domain H5404_04900 PF01292 Prokaryotic cytochrome b561 H5404_04915 PF00563 EAL domain H5404_04915 PF12792 CSS motif domain associated with EAL H5404_04920 PF00271 Helicase conserved C-terminal domain H5404_04920 PF00270 DEAD/DEAH box helicase H5404_04925 PF04336 Acyl carrier protein phosphodiesterase H5404_04930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_04935 PF13419 Haloacid dehalogenase-like hydrolase H5404_04940 PF11849 Domain of unknown function (DUF3369) H5404_04955 PF00294 pfkB family carbohydrate kinase H5404_04960 PF01268 Formate--tetrahydrofolate ligase H5404_04965 PF00483 Nucleotidyl transferase H5404_04970 PF00704 Glycosyl hydrolases family 18 H5404_04970 PF06483 Chitinase C H5404_04975 PF06719 AraC-type transcriptional regulator N-terminus H5404_04975 PF12833 Helix-turn-helix domain H5404_04980 PF00465 Iron-containing alcohol dehydrogenase H5404_04990 PF02954 Bacterial regulatory protein, Fis family H5404_04990 PF00072 Response regulator receiver domain H5404_04990 PF14532 Sigma-54 interaction domain H5404_04995 PF00512 His Kinase A (phospho-acceptor) domain H5404_04995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_04995 PF00672 HAMP domain H5404_05005 PF07690 Major Facilitator Superfamily H5404_05010 PF00224 Pyruvate kinase, barrel domain H5404_05010 PF02887 Pyruvate kinase, alpha/beta domain H5404_05015 PF00005 ABC transporter H5404_05020 PF00528 Binding-protein-dependent transport system inner membrane component H5404_05025 PF00497 Bacterial extracellular solute-binding proteins, family 3 H5404_05030 PF00528 Binding-protein-dependent transport system inner membrane component H5404_05035 PF00563 EAL domain H5404_05035 PF00990 Diguanylate cyclase, GGDEF domain H5404_05035 PF00989 PAS fold H5404_05035 PF01590 GAF domain H5404_05050 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family H5404_05050 PF00356 Bacterial regulatory proteins, lacI family H5404_05055 PF00381 PTS HPr component phosphorylation site H5404_05055 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 H5404_05060 PF00294 pfkB family carbohydrate kinase H5404_05065 PF02378 Phosphotransferase system, EIIC H5404_05065 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit H5404_05075 PF00873 AcrB/AcrD/AcrF family H5404_05085 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H5404_05095 PF08669 Glycine cleavage T-protein C-terminal barrel domain H5404_05095 PF01571 Aminomethyltransferase folate-binding domain H5404_05105 PF00464 Serine hydroxymethyltransferase H5404_05110 PF01597 Glycine cleavage H-protein H5404_05115 PF02347 Glycine cleavage system P-protein H5404_05120 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) H5404_05135 PF01381 Helix-turn-helix H5404_05145 PF07804 HipA-like C-terminal domain H5404_05145 PF13657 HipA N-terminal domain H5404_05210 PF03477 ATP cone domain H5404_05210 PF13597 Anaerobic ribonucleoside-triphosphate reductase H5404_05220 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H5404_05225 PF00873 AcrB/AcrD/AcrF family H5404_05235 PF04143 Sulphur transport H5404_05250 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain H5404_05250 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5404_05255 PF00384 Molybdopterin oxidoreductase H5404_05260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_05260 PF03466 LysR substrate binding domain H5404_05265 PF02634 FdhD/NarQ family H5404_05270 PF07690 Major Facilitator Superfamily H5404_05275 PF00196 Bacterial regulatory proteins, luxR family H5404_05275 PF00072 Response regulator receiver domain H5404_05280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_05280 PF07730 Histidine kinase H5404_05280 PF05231 MASE1 H5404_05285 PF07690 Major Facilitator Superfamily H5404_05290 PF01238 Phosphomannose isomerase type I H5404_05310 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal H5404_05310 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III H5404_05315 PF00085 Thioredoxin H5404_05320 PF07690 Major Facilitator Superfamily H5404_05325 PF12833 Helix-turn-helix domain H5404_05325 PF07494 Two component regulator propeller H5404_05325 PF00512 His Kinase A (phospho-acceptor) domain H5404_05325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_05325 PF00072 Response regulator receiver domain H5404_05325 PF07495 Y_Y_Y domain H5404_05330 PF01554 MatE H5404_05335 PF11756 Nitrous oxide-stimulated promoter H5404_05350 PF00593 TonB dependent receptor H5404_05350 PF07715 TonB-dependent Receptor Plug Domain H5404_05360 PF03605 Anaerobic c4-dicarboxylate membrane transporter H5404_05375 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases H5404_05375 PF10414 Sirohaem synthase dimerisation region H5404_05375 PF14824 Sirohaem biosynthesis protein central H5404_05380 PF01226 Formate/nitrite transporter H5404_05385 PF13806 Rieske-like [2Fe-2S] domain H5404_05390 PF18267 Rubredoxin NAD+ reductase C-terminal domain H5404_05390 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5404_05390 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain H5404_05390 PF01077 Nitrite and sulphite reductase 4Fe-4S domain H5404_05390 PF04324 BFD-like [2Fe-2S] binding domain H5404_05395 PF01272 Transcription elongation factor, GreA/GreB, C-term H5404_05395 PF14760 Rnk N-terminus H5404_05430 PF13462 Thioredoxin H5404_05430 PF06965 Na+/H+ antiporter 1 H5404_05450 PF09154 Domain of unknown function (DUF1939) H5404_05450 PF00128 Alpha amylase, catalytic domain H5404_05465 PF00672 HAMP domain H5404_05465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_05470 PF01168 Alanine racemase, N-terminal domain H5404_05470 PF00842 Alanine racemase, C-terminal domain H5404_05485 PF01565 FAD binding domain H5404_05485 PF09330 D-lactate dehydrogenase, membrane binding H5404_05490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_05490 PF03466 LysR substrate binding domain H5404_05505 PF05762 VWA domain containing CoxE-like protein H5404_05510 PF12592 Protein of unknown function (DUF3763) H5404_05510 PF17868 AAA lid domain H5404_05510 PF07728 AAA domain (dynein-related subfamily) H5404_05520 PF01212 Beta-eliminating lyase H5404_05525 PF00034 Cytochrome c H5404_05530 PF03606 C4-dicarboxylate anaerobic carrier H5404_05540 PF07690 Major Facilitator Superfamily H5404_05550 PF08212 Lipocalin-like domain H5404_05570 PF13476 AAA domain H5404_05575 PF12320 Type 5 capsule protein repressor C-terminal domain H5404_05575 PF00149 Calcineurin-like phosphoesterase H5404_05590 PF04717 Type VI secretion system, phage-baseplate injector H5404_05590 PF06715 Gp5 C-terminal repeat (3 copies) H5404_05600 PF00004 ATPase family associated with various cellular activities (AAA) H5404_05600 PF07724 AAA domain (Cdc48 subfamily) H5404_05600 PF17871 AAA lid domain H5404_05600 PF10431 C-terminal, D2-small domain, of ClpB protein H5404_05610 PF05947 Type VI secretion system, TssF H5404_05625 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath H5404_05630 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath H5404_05635 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 H5404_05655 PF06744 Type VI secretion protein IcmF C-terminal H5404_05655 PF14331 ImcF-related N-terminal domain H5404_05655 PF06761 Intracellular multiplication and human macrophage-killing H5404_05660 PF00691 OmpA family H5404_05660 PF13677 Membrane MotB of proton-channel complex MotA/MotB H5404_05665 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE H5404_05680 PF00069 Protein kinase domain H5404_05680 PF03793 PASTA domain H5404_05705 PF00072 Response regulator receiver domain H5404_05705 PF00211 Adenylate and Guanylate cyclase catalytic domain H5404_05720 PF08361 MAATS-type transcriptional repressor, C-terminal region H5404_05720 PF00440 Bacterial regulatory proteins, tetR family H5404_05735 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5404_05735 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain H5404_05735 PF13806 Rieske-like [2Fe-2S] domain H5404_05735 PF04324 BFD-like [2Fe-2S] binding domain H5404_05735 PF01077 Nitrite and sulphite reductase 4Fe-4S domain H5404_05735 PF18267 Rubredoxin NAD+ reductase C-terminal domain H5404_05740 PF00005 ABC transporter H5404_05745 PF00528 Binding-protein-dependent transport system inner membrane component H5404_05755 PF03861 ANTAR domain H5404_05755 PF08376 Nitrate and nitrite sensing H5404_05760 PF01738 Dienelactone hydrolase family H5404_05765 PF00591 Glycosyl transferase family, a/b domain H5404_05765 PF02885 Glycosyl transferase family, helical bundle domain H5404_05770 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases H5404_05770 PF14824 Sirohaem biosynthesis protein central H5404_05770 PF10414 Sirohaem synthase dimerisation region H5404_05775 PF04879 Molybdopterin oxidoreductase Fe4S4 domain H5404_05775 PF01568 Molydopterin dinucleotide binding domain H5404_05775 PF00384 Molybdopterin oxidoreductase H5404_05785 PF03222 Tryptophan/tyrosine permease family H5404_05790 PF00990 Diguanylate cyclase, GGDEF domain H5404_05790 PF00072 Response regulator receiver domain H5404_05800 PF00082 Subtilase family H5404_05800 PF01483 Proprotein convertase P-domain H5404_05810 PF00245 Alkaline phosphatase H5404_05825 PF00486 Transcriptional regulatory protein, C terminal H5404_05825 PF00072 Response regulator receiver domain H5404_05845 PF01048 Phosphorylase superfamily H5404_05850 PF04973 Nicotinamide mononucleotide transporter H5404_05860 PF00356 Bacterial regulatory proteins, lacI family H5404_05865 PF00294 pfkB family carbohydrate kinase H5404_05870 PF13407 Periplasmic binding protein domain H5404_05875 PF02653 Branched-chain amino acid transport system / permease component H5404_05880 PF00005 ABC transporter H5404_05885 PF05025 RbsD / FucU transport protein family H5404_05890 PF00990 Diguanylate cyclase, GGDEF domain H5404_05890 PF00563 EAL domain H5404_05895 PF01048 Phosphorylase superfamily H5404_05935 PF04116 Fatty acid hydroxylase superfamily H5404_05950 PF09308 LuxQ, periplasmic H5404_05950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_05950 PF00072 Response regulator receiver domain H5404_05950 PF00512 His Kinase A (phospho-acceptor) domain H5404_05955 PF03150 Di-haem cytochrome c peroxidase H5404_05955 PF00034 Cytochrome c H5404_05960 PF00990 Diguanylate cyclase, GGDEF domain H5404_05960 PF13188 PAS domain H5404_05960 PF03707 Bacterial signalling protein N terminal repeat H5404_05960 PF00563 EAL domain H5404_05970 PF16200 C-terminal region of band_7 H5404_05970 PF01145 SPFH domain / Band 7 family H5404_05980 PF00881 Nitroreductase family H5404_05985 PF00005 ABC transporter H5404_05985 PF00571 CBS domain H5404_05990 PF00528 Binding-protein-dependent transport system inner membrane component H5404_05995 PF04069 Substrate binding domain of ABC-type glycine betaine transport system H5404_06000 PF00732 GMC oxidoreductase H5404_06000 PF05199 GMC oxidoreductase H5404_06005 PF00171 Aldehyde dehydrogenase family H5404_06010 PF00440 Bacterial regulatory proteins, tetR family H5404_06010 PF13977 BetI-type transcriptional repressor, C-terminal H5404_06015 PF17151 Periplasmic sensor domain H5404_06015 PF00990 Diguanylate cyclase, GGDEF domain H5404_06025 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase H5404_06025 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase H5404_06035 PF00378 Enoyl-CoA hydratase/isomerase H5404_06040 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H5404_06040 PF02770 Acyl-CoA dehydrogenase, middle domain H5404_06040 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H5404_06045 PF00171 Aldehyde dehydrogenase family H5404_06050 PF00108 Thiolase, N-terminal domain H5404_06050 PF02803 Thiolase, C-terminal domain H5404_06055 PF00376 MerR family regulatory protein H5404_06055 PF09278 MerR, DNA binding H5404_06060 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H5404_06060 PF02770 Acyl-CoA dehydrogenase, middle domain H5404_06060 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H5404_06065 PF01039 Carboxyl transferase domain H5404_06070 PF00378 Enoyl-CoA hydratase/isomerase H5404_06075 PF00364 Biotin-requiring enzyme H5404_06075 PF00289 Biotin carboxylase, N-terminal domain H5404_06075 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain H5404_06075 PF02785 Biotin carboxylase C-terminal domain H5404_06080 PF00682 HMGL-like H5404_06085 PF00072 Response regulator receiver domain H5404_06085 PF00672 HAMP domain H5404_06085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_06085 PF00512 His Kinase A (phospho-acceptor) domain H5404_06085 PF01627 Hpt domain H5404_06085 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) H5404_06100 PF12794 Mechanosensitive ion channel inner membrane domain 1 H5404_06100 PF00924 Mechanosensitive ion channel H5404_06100 PF12795 Mechanosensitive ion channel porin domain H5404_06105 PF14602 Hexapeptide repeat of succinyl-transferase H5404_06105 PF12464 Maltose acetyltransferase H5404_06110 PF00155 Aminotransferase class I and II H5404_06110 PF00392 Bacterial regulatory proteins, gntR family H5404_06115 PF01654 Cytochrome bd terminal oxidase subunit I H5404_06120 PF02322 Cytochrome bd terminal oxidase subunit II H5404_06130 PF02567 Phenazine biosynthesis-like protein H5404_06135 PF02627 Carboxymuconolactone decarboxylase family H5404_06140 PF13411 MerR HTH family regulatory protein H5404_06150 PF00034 Cytochrome c H5404_06160 PF05724 Thiopurine S-methyltransferase (TPMT) H5404_06165 PF00501 AMP-binding enzyme H5404_06165 PF14535 AMP-binding enzyme C-terminal domain H5404_06170 PF00005 ABC transporter H5404_06195 PF12399 Branched-chain amino acid ATP-binding cassette transporter H5404_06195 PF00005 ABC transporter H5404_06205 PF01012 Electron transfer flavoprotein domain H5404_06210 PF00766 Electron transfer flavoprotein FAD-binding domain H5404_06210 PF01012 Electron transfer flavoprotein domain H5404_06215 PF13193 AMP-binding enzyme C-terminal domain H5404_06215 PF00501 AMP-binding enzyme H5404_06220 PF00478 IMP dehydrogenase / GMP reductase domain H5404_06225 PF01256 Carbohydrate kinase H5404_06225 PF03853 YjeF-related protein N-terminus H5404_06235 PF00072 Response regulator receiver domain H5404_06240 PF00248 Aldo/keto reductase family H5404_06255 PF00654 Voltage gated chloride channel H5404_06265 PF01566 Natural resistance-associated macrophage protein H5404_06270 PF01227 GTP cyclohydrolase I H5404_06275 PF00994 Probable molybdopterin binding domain H5404_06275 PF03454 MoeA C-terminal region (domain IV) H5404_06275 PF03453 MoeA N-terminal region (domain I and II) H5404_06280 PF00899 ThiF family H5404_06300 PF00581 Rhodanese-like domain H5404_06305 PF00563 EAL domain H5404_06305 PF00990 Diguanylate cyclase, GGDEF domain H5404_06305 PF03707 Bacterial signalling protein N terminal repeat H5404_06310 PF00704 Glycosyl hydrolases family 18 H5404_06310 PF08329 Chitinase A, N-terminal domain H5404_06320 PF00923 Transaldolase/Fructose-6-phosphate aldolase H5404_06325 PF02779 Transketolase, pyrimidine binding domain H5404_06325 PF00456 Transketolase, thiamine diphosphate binding domain H5404_06325 PF02780 Transketolase, C-terminal domain H5404_06330 PF08447 PAS fold H5404_06330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_06335 PF07690 Major Facilitator Superfamily H5404_06340 PF00793 DAHP synthetase I family H5404_06345 PF01389 OmpA-like transmembrane domain H5404_06345 PF00691 OmpA family H5404_06350 PF13419 Haloacid dehalogenase-like hydrolase H5404_06355 PF00472 RF-1 domain H5404_06360 PF12729 Four helix bundle sensory module for signal transduction H5404_06360 PF00672 HAMP domain H5404_06360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_06365 PF00873 AcrB/AcrD/AcrF family H5404_06370 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H5404_06375 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region H5404_06380 PF01546 Peptidase family M20/M25/M40 H5404_06380 PF07687 Peptidase dimerisation domain H5404_06395 PF00196 Bacterial regulatory proteins, luxR family H5404_06395 PF00072 Response regulator receiver domain H5404_06400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_06400 PF00672 HAMP domain H5404_06400 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term H5404_06400 PF07730 Histidine kinase H5404_06405 PF12838 4Fe-4S dicluster domain H5404_06405 PF13187 4Fe-4S dicluster domain H5404_06415 PF00384 Molybdopterin oxidoreductase H5404_06415 PF04879 Molybdopterin oxidoreductase Fe4S4 domain H5404_06415 PF01568 Molydopterin dinucleotide binding domain H5404_06420 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) H5404_06425 PF03264 NapC/NirT cytochrome c family, N-terminal region H5404_06435 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus H5404_06445 PF00108 Thiolase, N-terminal domain H5404_06445 PF02803 Thiolase, C-terminal domain H5404_06450 PF00106 short chain dehydrogenase H5404_06455 PF01810 LysE type translocator H5404_06465 PF07549 SecD/SecF GG Motif H5404_06465 PF02355 Protein export membrane protein H5404_06470 PF02355 Protein export membrane protein H5404_06470 PF13721 SecD export protein N-terminal TM region H5404_06470 PF07549 SecD/SecF GG Motif H5404_06495 PF01037 Lrp/AsnC ligand binding domain H5404_06515 PF00529 HlyD membrane-fusion protein of T1SS H5404_06515 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H5404_06530 PF13407 Periplasmic binding protein domain H5404_06535 PF01541 GIY-YIG catalytic domain H5404_06540 PF04337 Protein of unknown function, DUF480 H5404_06550 PF04363 Protein of unknown function (DUF496) H5404_06555 PF01554 MatE H5404_06560 PF01408 Oxidoreductase family, NAD-binding Rossmann fold H5404_06565 PF00672 HAMP domain H5404_06565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_06565 PF00512 His Kinase A (phospho-acceptor) domain H5404_06565 PF01627 Hpt domain H5404_06565 PF00072 Response regulator receiver domain H5404_06565 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) H5404_06570 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain H5404_06570 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain H5404_06585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_06585 PF03466 LysR substrate binding domain H5404_06590 PF01037 Lrp/AsnC ligand binding domain H5404_06590 PF13404 AsnC-type helix-turn-helix domain H5404_06595 PF13520 Amino acid permease H5404_06600 PF00155 Aminotransferase class I and II H5404_06600 PF00392 Bacterial regulatory proteins, gntR family H5404_06610 PF03109 ABC1 family H5404_06615 PF03448 MgtE intracellular N domain H5404_06615 PF01769 Divalent cation transporter H5404_06615 PF00571 CBS domain H5404_06620 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin H5404_06625 PF07969 Amidohydrolase family H5404_06635 PF01966 HD domain H5404_06645 PF07690 Major Facilitator Superfamily H5404_06655 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase H5404_06660 PF00255 Glutathione peroxidase H5404_06675 PF01323 DSBA-like thioredoxin domain H5404_06690 PF00106 short chain dehydrogenase H5404_06695 PF00486 Transcriptional regulatory protein, C terminal H5404_06695 PF00072 Response regulator receiver domain H5404_06700 PF00512 His Kinase A (phospho-acceptor) domain H5404_06700 PF00672 HAMP domain H5404_06700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_06710 PF01219 Prokaryotic diacylglycerol kinase H5404_06715 PF08019 Phosphoethanolamine transferase EptA/EptB H5404_06715 PF00884 Sulfatase H5404_06720 PF01408 Oxidoreductase family, NAD-binding Rossmann fold H5404_06730 PF07690 Major Facilitator Superfamily H5404_06745 PF01047 MarR family H5404_06755 PF01734 Patatin-like phospholipase H5404_06760 PF05726 Pirin C-terminal cupin domain H5404_06760 PF02678 Pirin H5404_06765 PF00313 'Cold-shock' DNA-binding domain H5404_06780 PF00962 Adenosine/AMP deaminase H5404_06785 PF00462 Glutaredoxin H5404_06785 PF08534 Redoxin H5404_06795 PF00768 D-alanyl-D-alanine carboxypeptidase H5404_06795 PF07943 Penicillin-binding protein 5, C-terminal domain H5404_06800 PF02798 Glutathione S-transferase, N-terminal domain H5404_06805 PF02909 Tetracyclin repressor-like, C-terminal domain H5404_06805 PF00440 Bacterial regulatory proteins, tetR family H5404_06810 PF01872 RibD C-terminal domain H5404_06865 PF00528 Binding-protein-dependent transport system inner membrane component H5404_06870 PF14785 Maltose transport system permease protein MalF P2 domain H5404_06870 PF00528 Binding-protein-dependent transport system inner membrane component H5404_06875 PF01547 Bacterial extracellular solute-binding protein H5404_06880 PF08402 TOBE domain H5404_06880 PF00005 ABC transporter H5404_06885 PF02397 Bacterial sugar transferase H5404_06900 PF13807 G-rich domain on putative tyrosine kinase H5404_06900 PF13614 AAA domain H5404_06900 PF02706 Chain length determinant protein H5404_06910 PF00534 Glycosyl transferases group 1 H5404_06910 PF13439 Glycosyltransferase Family 4 H5404_06940 PF04266 ASCH domain H5404_06945 PF16925 Tetracyclin repressor-like, C-terminal domain H5404_06945 PF00440 Bacterial regulatory proteins, tetR family H5404_06950 PF00107 Zinc-binding dehydrogenase H5404_06950 PF16884 N-terminal domain of oxidoreductase H5404_06955 PF13417 Glutathione S-transferase, N-terminal domain H5404_06960 PF00199 Catalase H5404_06960 PF06628 Catalase-related immune-responsive H5404_06965 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase H5404_06965 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase H5404_06975 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit H5404_06985 PF12833 Helix-turn-helix domain H5404_06990 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit H5404_06990 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 H5404_06995 PF01238 Phosphomannose isomerase type I H5404_07005 PF13419 Haloacid dehalogenase-like hydrolase H5404_07010 PF00127 Copper binding proteins, plastocyanin/azurin family H5404_07015 PF03707 Bacterial signalling protein N terminal repeat H5404_07015 PF00563 EAL domain H5404_07015 PF00990 Diguanylate cyclase, GGDEF domain H5404_07020 PF02386 Cation transport protein H5404_07025 PF02080 TrkA-C domain H5404_07025 PF02254 TrkA-N domain H5404_07030 PF00072 Response regulator receiver domain H5404_07030 PF00486 Transcriptional regulatory protein, C terminal H5404_07035 PF13493 Domain of unknown function (DUF4118) H5404_07035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_07035 PF02702 Osmosensitive K+ channel His kinase sensor domain H5404_07035 PF13493 Domain of unknown function (DUF4118) H5404_07035 PF02702 Osmosensitive K+ channel His kinase sensor domain H5404_07035 PF00512 His Kinase A (phospho-acceptor) domain H5404_07035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_07035 PF00512 His Kinase A (phospho-acceptor) domain H5404_07040 PF00005 ABC transporter H5404_07040 PF00664 ABC transporter transmembrane region H5404_07045 PF00593 TonB dependent receptor H5404_07045 PF07715 TonB-dependent Receptor Plug Domain H5404_07050 PF00005 ABC transporter H5404_07055 PF01497 Periplasmic binding protein H5404_07060 PF01032 FecCD transport family H5404_07070 PF00691 OmpA family H5404_07070 PF01389 OmpA-like transmembrane domain H5404_07085 PF00529 HlyD membrane-fusion protein of T1SS H5404_07090 PF00005 ABC transporter H5404_07090 PF00664 ABC transporter transmembrane region H5404_07100 PF00196 Bacterial regulatory proteins, luxR family H5404_07105 PF00196 Bacterial regulatory proteins, luxR family H5404_07115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_07115 PF02743 Cache domain H5404_07115 PF00672 HAMP domain H5404_07120 PF17863 AAA lid domain H5404_07120 PF07726 ATPase family associated with various cellular activities (AAA) H5404_07125 PF01882 Protein of unknown function DUF58 H5404_07135 PF13519 von Willebrand factor type A domain H5404_07140 PF13519 von Willebrand factor type A domain H5404_07140 PF07584 Aerotolerance regulator N-terminal H5404_07155 PF00005 ABC transporter H5404_07160 PF00528 Binding-protein-dependent transport system inner membrane component H5404_07165 PF00528 Binding-protein-dependent transport system inner membrane component H5404_07170 PF12849 PBP superfamily domain H5404_07175 PF00672 HAMP domain H5404_07175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_07195 PF07715 TonB-dependent Receptor Plug Domain H5404_07195 PF00593 TonB dependent receptor H5404_07200 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain H5404_07200 PF00326 Prolyl oligopeptidase family H5404_07205 PF00271 Helicase conserved C-terminal domain H5404_07205 PF00270 DEAD/DEAH box helicase H5404_07215 PF17969 L,D-transpeptidase C-terminal domain H5404_07215 PF01476 LysM domain H5404_07215 PF03734 L,D-transpeptidase catalytic domain H5404_07220 PF03441 FAD binding domain of DNA photolyase H5404_07220 PF00875 DNA photolyase H5404_07225 PF13411 MerR HTH family regulatory protein H5404_07230 PF08349 Protein of unknown function (DUF1722) H5404_07235 PF01048 Phosphorylase superfamily H5404_07250 PF00990 Diguanylate cyclase, GGDEF domain H5404_07255 PF11742 Protein of unknown function (DUF3302) H5404_07260 PF00529 HlyD membrane-fusion protein of T1SS H5404_07260 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H5404_07265 PF07155 ECF-type riboflavin transporter, S component H5404_07270 PF12558 ATP-binding cassette cobalt transporter H5404_07270 PF00005 ABC transporter H5404_07285 PF12801 4Fe-4S binding domain H5404_07285 PF13237 4Fe-4S dicluster domain H5404_07290 PF12800 4Fe-4S binding domain H5404_07290 PF12838 4Fe-4S dicluster domain H5404_07295 PF00583 Acetyltransferase (GNAT) family H5404_07310 PF12945 Flagellar protein YcgR H5404_07310 PF07238 PilZ domain H5404_07315 PF00672 HAMP domain H5404_07315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_07320 PF13654 AAA domain H5404_07320 PF05362 Lon protease (S16) C-terminal proteolytic domain H5404_07330 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H5404_07330 PF00005 ABC transporter H5404_07335 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain H5404_07335 PF00326 Prolyl oligopeptidase family H5404_07340 PF03466 LysR substrate binding domain H5404_07340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_07345 PF02652 L-lactate permease H5404_07350 PF01070 FMN-dependent dehydrogenase H5404_07360 PF00924 Mechanosensitive ion channel H5404_07365 PF00194 Eukaryotic-type carbonic anhydrase H5404_07395 PF12167 Arm DNA-binding domain H5404_07395 PF00589 Phage integrase family H5404_07415 PF08240 Alcohol dehydrogenase GroES-like domain H5404_07415 PF00107 Zinc-binding dehydrogenase H5404_07420 PF00155 Aminotransferase class I and II H5404_07425 PF00563 EAL domain H5404_07425 PF00990 Diguanylate cyclase, GGDEF domain H5404_07425 PF03707 Bacterial signalling protein N terminal repeat H5404_07430 PF00497 Bacterial extracellular solute-binding proteins, family 3 H5404_07435 PF00266 Aminotransferase class-V H5404_07440 PF00080 Copper/zinc superoxide dismutase (SODC) H5404_07445 PF13426 PAS domain H5404_07445 PF00072 Response regulator receiver domain H5404_07445 PF00512 His Kinase A (phospho-acceptor) domain H5404_07445 PF08448 PAS fold H5404_07445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_07450 PF00072 Response regulator receiver domain H5404_07450 PF00486 Transcriptional regulatory protein, C terminal H5404_07470 PF03466 LysR substrate binding domain H5404_07470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_07475 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H5404_07510 PF03466 LysR substrate binding domain H5404_07510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_07525 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain H5404_07525 PF18269 T3SS EscN ATPase C-terminal domain H5404_07535 PF01706 FliG C-terminal domain H5404_07535 PF14841 FliG middle domain H5404_07535 PF14842 FliG N-terminal domain H5404_07540 PF01514 Secretory protein of YscJ/FliF family H5404_07540 PF08345 Flagellar M-ring protein C-terminal H5404_07545 PF02049 Flagellar hook-basal body complex protein FliE H5404_07550 PF00072 Response regulator receiver domain H5404_07550 PF02954 Bacterial regulatory protein, Fis family H5404_07550 PF00158 Sigma-54 interaction domain H5404_07565 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term H5404_07570 PF00813 FliP family H5404_07575 PF01313 Bacterial export proteins, family 3 H5404_07580 PF01311 Bacterial export proteins, family 1 H5404_07585 PF01312 FlhB HrpN YscU SpaS Family H5404_07590 PF00771 FHIPEP family H5404_07600 PF00700 Bacterial flagellin C-terminal helical region H5404_07600 PF00669 Bacterial flagellin N-terminal helical region H5404_07610 PF07195 Flagellar hook-associated protein 2 C-terminus H5404_07610 PF02465 Flagellar hook-associated protein 2 N-terminus H5404_07610 PF07196 Flagellin hook IN motif H5404_07615 PF02561 Flagellar protein FliS H5404_07630 PF03748 Flagellar basal body-associated protein FliL H5404_07635 PF04542 Sigma-70 region 2 H5404_07635 PF04545 Sigma-70, region 4 H5404_07640 PF01618 MotA/TolQ/ExbB proton channel family H5404_07645 PF13677 Membrane MotB of proton-channel complex MotA/MotB H5404_07645 PF00691 OmpA family H5404_07655 PF08000 Bacterial PH domain H5404_07675 PF02901 Pyruvate formate lyase-like H5404_07675 PF01228 Glycine radical H5404_07680 PF04055 Radical SAM superfamily H5404_07685 PF00923 Transaldolase/Fructose-6-phosphate aldolase H5404_07695 PF00583 Acetyltransferase (GNAT) family H5404_07705 PF07690 Major Facilitator Superfamily H5404_07710 PF03466 LysR substrate binding domain H5404_07710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_07715 PF00892 EamA-like transporter family H5404_07735 PF13533 Biotin-lipoyl like H5404_07745 PF01594 AI-2E family transporter H5404_07750 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) H5404_07760 PF00175 Oxidoreductase NAD-binding domain H5404_07760 PF00970 Oxidoreductase FAD-binding domain H5404_07770 PF09905 DNA-binding protein VF530 H5404_07775 PF03466 LysR substrate binding domain H5404_07775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_07785 PF00881 Nitroreductase family H5404_07790 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term H5404_07790 PF12833 Helix-turn-helix domain H5404_07795 PF00128 Alpha amylase, catalytic domain H5404_07795 PF00686 Starch binding domain H5404_07800 PF07943 Penicillin-binding protein 5, C-terminal domain H5404_07800 PF00768 D-alanyl-D-alanine carboxypeptidase H5404_07805 PF00561 alpha/beta hydrolase fold H5404_07815 PF17773 UPF0176 acylphosphatase like domain H5404_07815 PF00581 Rhodanese-like domain H5404_07820 PF18416 N-acetylglucosamine binding protein domain 2 H5404_07820 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading H5404_07825 PF01734 Patatin-like phospholipase H5404_07830 PF01914 MarC family integral membrane protein H5404_07835 PF00881 Nitroreductase family H5404_07840 PF10531 SLBB domain H5404_07840 PF18412 Outer-membrane lipoprotein Wza C-terminal domain H5404_07840 PF02563 Polysaccharide biosynthesis/export protein H5404_07845 PF01451 Low molecular weight phosphotyrosine protein phosphatase H5404_07850 PF13807 G-rich domain on putative tyrosine kinase H5404_07850 PF13614 AAA domain H5404_07850 PF02706 Chain length determinant protein H5404_07860 PF08803 Putative mono-oxygenase ydhR H5404_07865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_07865 PF03466 LysR substrate binding domain H5404_07875 PF00375 Sodium:dicarboxylate symporter family H5404_07880 PF06803 Protein of unknown function (DUF1232) H5404_07885 PF01546 Peptidase family M20/M25/M40 H5404_07885 PF07687 Peptidase dimerisation domain H5404_07890 PF07670 Nucleoside recognition H5404_07895 PF07670 Nucleoside recognition H5404_07910 PF00128 Alpha amylase, catalytic domain H5404_07915 PF00912 Transglycosylase H5404_07920 PF00128 Alpha amylase, catalytic domain H5404_07920 PF02806 Alpha amylase, C-terminal all-beta domain H5404_07920 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) H5404_07925 PF02446 4-alpha-glucanotransferase H5404_07930 PF00343 Carbohydrate phosphorylase H5404_07935 PF17874 MalT-like TPR region H5404_07935 PF00196 Bacterial regulatory proteins, luxR family H5404_07950 PF02630 SCO1/SenC H5404_07960 PF02378 Phosphotransferase system, EIIC H5404_07960 PF00367 phosphotransferase system, EIIB H5404_07965 PF03193 RsgA GTPase H5404_07970 PF00375 Sodium:dicarboxylate symporter family H5404_07980 PF08543 Phosphomethylpyrimidine kinase H5404_07990 PF13520 Amino acid permease H5404_07995 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain H5404_07995 PF01276 Orn/Lys/Arg decarboxylase, major domain H5404_07995 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain H5404_08010 PF03714 Bacterial pullanase-associated domain H5404_08010 PF18494 Pullulanase Ins domain H5404_08010 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) H5404_08010 PF17967 Pullulanase N2 domain H5404_08010 PF11852 Domain of unknown function (DUF3372) H5404_08015 PF04231 Endonuclease I H5404_08020 PF16657 Maltogenic Amylase, C-terminal domain H5404_08020 PF02903 Alpha amylase, N-terminal ig-like domain H5404_08020 PF00128 Alpha amylase, catalytic domain H5404_08035 PF02264 LamB porin H5404_08040 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) H5404_08040 PF00128 Alpha amylase, catalytic domain H5404_08050 PF00308 Bacterial dnaA protein H5404_08050 PF08299 Bacterial dnaA protein helix-turn-helix H5404_08050 PF11638 DnaA N-terminal domain H5404_08055 PF02767 DNA polymerase III beta subunit, central domain H5404_08055 PF02768 DNA polymerase III beta subunit, C-terminal domain H5404_08055 PF00712 DNA polymerase III beta subunit, N-terminal domain H5404_08060 PF02463 RecF/RecN/SMC N terminal domain H5404_08065 PF00986 DNA gyrase B subunit, carboxyl terminus H5404_08065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_08065 PF18053 DNA gyrase B subunit insert domain H5404_08065 PF01751 Toprim domain H5404_08065 PF00204 DNA gyrase B H5404_08075 PF00011 Hsp20/alpha crystallin family H5404_08080 PF00155 Aminotransferase class I and II H5404_08085 PF00128 Alpha amylase, catalytic domain H5404_08090 PF02092 Glycyl-tRNA synthetase beta subunit H5404_08090 PF05746 DALR anticodon binding domain H5404_08095 PF02091 Glycyl-tRNA synthetase alpha subunit H5404_08100 PF01169 Uncharacterized protein family UPF0016 H5404_08110 PF01206 Sulfurtransferase TusA H5404_08120 PF03466 LysR substrate binding domain H5404_08120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_08125 PF00107 Zinc-binding dehydrogenase H5404_08125 PF08240 Alcohol dehydrogenase GroES-like domain H5404_08130 PF00108 Thiolase, N-terminal domain H5404_08130 PF02803 Thiolase, C-terminal domain H5404_08135 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain H5404_08135 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain H5404_08135 PF00378 Enoyl-CoA hydratase/isomerase H5404_08140 PF01205 Uncharacterized protein family UPF0029 H5404_08140 PF09186 Domain of unknown function (DUF1949) H5404_08145 PF02386 Cation transport protein H5404_08150 PF12724 Flavodoxin domain H5404_08185 PF03466 LysR substrate binding domain H5404_08185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_08190 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain H5404_08190 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain H5404_08195 PF04380 Membrane fusogenic activity H5404_08200 PF00873 AcrB/AcrD/AcrF family H5404_08205 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H5404_08210 PF16295 Tetracyclin repressor-like, C-terminal domain H5404_08210 PF00440 Bacterial regulatory proteins, tetR family H5404_08215 PF13361 UvrD-like helicase C-terminal domain H5404_08215 PF00580 UvrD/REP helicase N-terminal domain H5404_08220 PF13442 Cytochrome C oxidase, cbb3-type, subunit III H5404_08250 PF13419 Haloacid dehalogenase-like hydrolase H5404_08255 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H5404_08255 PF00005 ABC transporter H5404_08260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle H5404_08265 PF00528 Binding-protein-dependent transport system inner membrane component H5404_08270 PF12911 N-terminal TM domain of oligopeptide transport permease C H5404_08270 PF00528 Binding-protein-dependent transport system inner membrane component H5404_08300 PF00069 Protein kinase domain H5404_08305 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family H5404_08305 PF00356 Bacterial regulatory proteins, lacI family H5404_08310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_08310 PF03466 LysR substrate binding domain H5404_08315 PF00893 Small Multidrug Resistance protein H5404_08320 PF00893 Small Multidrug Resistance protein H5404_08325 PF00920 Dehydratase family H5404_08330 PF01202 Shikimate kinase H5404_08335 PF02447 GntP family permease H5404_08340 PF01081 KDPG and KHG aldolase H5404_08345 PF01048 Phosphorylase superfamily H5404_08350 PF03466 LysR substrate binding domain H5404_08350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_08355 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5404_08355 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain H5404_08360 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ H5404_08365 PF01432 Peptidase family M3 H5404_08370 PF01037 Lrp/AsnC ligand binding domain H5404_08375 PF08448 PAS fold H5404_08375 PF00990 Diguanylate cyclase, GGDEF domain H5404_08375 PF00563 EAL domain H5404_08380 PF04445 Putative SAM-dependent methyltransferase H5404_08390 PF00892 EamA-like transporter family H5404_08395 PF00582 Universal stress protein family H5404_08400 PF00210 Ferritin-like domain H5404_08405 PF10625 Universal stress protein B (UspB) H5404_08415 PF00158 Sigma-54 interaction domain H5404_08415 PF02954 Bacterial regulatory protein, Fis family H5404_08415 PF01590 GAF domain H5404_08420 PF04972 BON domain H5404_08470 PF01594 AI-2E family transporter H5404_08475 PF03707 Bacterial signalling protein N terminal repeat H5404_08475 PF00990 Diguanylate cyclase, GGDEF domain H5404_08475 PF00563 EAL domain H5404_08485 PF02646 RmuC family H5404_08490 PF01209 ubiE/COQ5 methyltransferase family H5404_08495 PF02036 SCP-2 sterol transfer family H5404_08500 PF03109 ABC1 family H5404_08505 PF02416 mttA/Hcf106 family H5404_08510 PF02416 mttA/Hcf106 family H5404_08515 PF00902 Sec-independent protein translocase protein (TatC) H5404_08520 PF01026 TatD related DNase H5404_08525 PF00490 Delta-aminolevulinic acid dehydratase H5404_08535 PF00476 DNA polymerase family A H5404_08535 PF01612 3'-5' exonuclease H5404_08535 PF01367 5'-3' exonuclease, C-terminal SAM fold H5404_08535 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain H5404_08540 PF01926 50S ribosome-binding GTPase H5404_08545 PF00034 Cytochrome c H5404_08555 PF04220 Der GTPase activator (YihI) H5404_08560 PF10675 Protein of unknown function (DUF2489) H5404_08565 PF06969 HemN C-terminal domain H5404_08565 PF04055 Radical SAM superfamily H5404_08570 PF00962 Adenosine/AMP deaminase H5404_08575 PF03707 Bacterial signalling protein N terminal repeat H5404_08575 PF00563 EAL domain H5404_08575 PF00990 Diguanylate cyclase, GGDEF domain H5404_08580 PF02954 Bacterial regulatory protein, Fis family H5404_08580 PF00072 Response regulator receiver domain H5404_08580 PF00158 Sigma-54 interaction domain H5404_08585 PF00512 His Kinase A (phospho-acceptor) domain H5404_08585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_08585 PF00989 PAS fold H5404_08595 PF03951 Glutamine synthetase, beta-Grasp domain H5404_08595 PF00120 Glutamine synthetase, catalytic domain H5404_08600 PF00679 Elongation factor G C-terminus H5404_08600 PF03144 Elongation factor Tu domain 2 H5404_08600 PF00009 Elongation factor Tu GTP binding domain H5404_08615 PF03631 Virulence factor BrkB H5404_08620 PF02580 D-Tyr-tRNA(Tyr) deacylase H5404_08625 PF09500 Putative thioesterase (yiiD_Cterm) H5404_08625 PF00583 Acetyltransferase (GNAT) family H5404_08635 PF01293 Phosphoenolpyruvate carboxykinase H5404_08640 PF01430 Hsp33 protein H5404_08645 PF01479 S4 domain H5404_08650 PF11356 Type II secretion system protein C H5404_08655 PF03958 Bacterial type II/III secretion system short domain H5404_08655 PF00263 Bacterial type II and III secretion system protein H5404_08660 PF00437 Type II/IV secretion system protein H5404_08665 PF00482 Type II secretion system (T2SS), protein F H5404_08670 PF08334 Type II secretion system (T2SS), protein G H5404_08670 PF07963 Prokaryotic N-terminal methylation motif H5404_08675 PF12019 Type II transport protein GspH H5404_08680 PF02501 Type II secretion system (T2SS), protein I H5404_08680 PF07963 Prokaryotic N-terminal methylation motif H5404_08685 PF11612 Type II secretion system (T2SS), protein J H5404_08685 PF07963 Prokaryotic N-terminal methylation motif H5404_08690 PF03934 Type II secretion system (T2SS), protein K H5404_08695 PF12693 GspL periplasmic domain H5404_08695 PF05134 Type II secretion system (T2SS), protein L H5404_08700 PF04612 Type II secretion system (T2SS), protein M H5404_08705 PF01203 Type II secretion system (T2SS), protein N H5404_08710 PF00459 Inositol monophosphatase family H5404_08715 PF00293 NUDIX domain H5404_08720 PF01521 Iron-sulphur cluster biosynthesis H5404_08720 PF01106 NifU-like domain H5404_08725 PF00156 Phosphoribosyl transferase domain H5404_08730 PF00561 alpha/beta hydrolase fold H5404_08740 PF17674 HHH domain H5404_08740 PF00575 S1 RNA binding domain H5404_08740 PF09371 Tex-like protein N-terminal domain H5404_08740 PF16921 Tex protein YqgF-like domain H5404_08750 PF01272 Transcription elongation factor, GreA/GreB, C-term H5404_08750 PF03449 Transcription elongation factor, N-terminal H5404_08760 PF00072 Response regulator receiver domain H5404_08760 PF00486 Transcriptional regulatory protein, C terminal H5404_08765 PF00672 HAMP domain H5404_08765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_08765 PF00512 His Kinase A (phospho-acceptor) domain H5404_08770 PF00860 Permease family H5404_08775 PF00271 Helicase conserved C-terminal domain H5404_08775 PF00270 DEAD/DEAH box helicase H5404_08775 PF17191 RecG wedge domain H5404_08780 PF12105 SpoU, rRNA methylase, C-terminal H5404_08780 PF00588 SpoU rRNA Methylase family H5404_08785 PF04607 Region found in RelA / SpoT proteins H5404_08785 PF02824 TGS domain H5404_08785 PF13291 ACT domain H5404_08790 PF01192 RNA polymerase Rpb6 H5404_08795 PF00625 Guanylate kinase H5404_08810 PF02472 Biopolymer transport protein ExbD/TolR H5404_08815 PF01618 MotA/TolQ/ExbB proton channel family H5404_08830 PF00593 TonB dependent receptor H5404_08830 PF07715 TonB-dependent Receptor Plug Domain H5404_08835 PF00528 Binding-protein-dependent transport system inner membrane component H5404_08840 PF12911 N-terminal TM domain of oligopeptide transport permease C H5404_08840 PF00528 Binding-protein-dependent transport system inner membrane component H5404_08845 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle H5404_08850 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H5404_08850 PF00005 ABC transporter H5404_08855 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H5404_08855 PF00005 ABC transporter H5404_08865 PF08340 Domain of unknown function (DUF1732) H5404_08865 PF03755 YicC-like family, N-terminal region H5404_08870 PF01138 3' exoribonuclease family, domain 1 H5404_08870 PF03725 3' exoribonuclease family, domain 2 H5404_08875 PF00156 Phosphoribosyl transferase domain H5404_08880 PF03279 Bacterial lipid A biosynthesis acyltransferase H5404_08885 PF00440 Bacterial regulatory proteins, tetR family H5404_08890 PF04127 DNA / pantothenate metabolism flavoprotein H5404_08890 PF02441 Flavoprotein H5404_08895 PF17200 Single Cache domain 2 H5404_08895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_08895 PF00672 HAMP domain H5404_08900 PF04002 RadC-like JAB domain H5404_08905 PF00830 Ribosomal L28 family H5404_08910 PF00471 Ribosomal protein L33 H5404_08920 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain H5404_08920 PF06827 Zinc finger found in FPG and IleRS H5404_08920 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain H5404_08925 PF01467 Cytidylyltransferase-like H5404_08930 PF05686 Glycosyl transferase family 90 H5404_08935 PF00535 Glycosyl transferase family 2 H5404_08940 PF00535 Glycosyl transferase family 2 H5404_08945 PF01075 Glycosyltransferase family 9 (heptosyltransferase) H5404_08950 PF01219 Prokaryotic diacylglycerol kinase H5404_08960 PF16363 GDP-mannose 4,6 dehydratase H5404_08965 PF00483 Nucleotidyl transferase H5404_08970 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family H5404_08975 PF00501 AMP-binding enzyme H5404_08975 PF00975 Thioesterase domain H5404_08975 PF00550 Phosphopantetheine attachment site H5404_08975 PF00668 Condensation domain H5404_08975 PF13193 AMP-binding enzyme C-terminal domain H5404_08985 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal H5404_08985 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III H5404_09000 PF02911 Formyl transferase, C-terminal domain H5404_09000 PF00551 Formyl transferase H5404_09010 PF00535 Glycosyl transferase family 2 H5404_09025 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) H5404_09030 PF01075 Glycosyltransferase family 9 (heptosyltransferase) H5404_09035 PF03279 Bacterial lipid A biosynthesis acyltransferase H5404_09040 PF01370 NAD dependent epimerase/dehydratase family H5404_09045 PF06082 Exopolysaccharide biosynthesis protein YbjH H5404_09080 PF13439 Glycosyltransferase Family 4 H5404_09080 PF00534 Glycosyl transferases group 1 H5404_09105 PF01757 Acyltransferase family H5404_09115 PF02397 Bacterial sugar transferase H5404_09120 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain H5404_09120 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain H5404_09120 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain H5404_09125 PF01370 NAD dependent epimerase/dehydratase family H5404_09130 PF00483 Nucleotidyl transferase H5404_09135 PF00753 Metallo-beta-lactamase superfamily H5404_09135 PF10996 Beta-Casp domain H5404_09135 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain H5404_09140 PF00121 Triosephosphate isomerase H5404_09160 PF08220 DeoR-like helix-turn-helix domain H5404_09160 PF00455 DeoR C terminal sensor domain H5404_09165 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded H5404_09170 PF06005 Cell division protein ZapB H5404_09175 PF03737 Aldolase/RraA H5404_09180 PF01040 UbiA prenyltransferase family H5404_09185 PF07724 AAA domain (Cdc48 subfamily) H5404_09185 PF00004 ATPase family associated with various cellular activities (AAA) H5404_09190 PF00227 Proteasome subunit H5404_09200 PF00356 Bacterial regulatory proteins, lacI family H5404_09205 PF18074 Primosomal protein N C-terminal domain H5404_09205 PF18319 PriA DNA helicase Cys-rich region (CRR) domain H5404_09205 PF00271 Helicase conserved C-terminal domain H5404_09205 PF00270 DEAD/DEAH box helicase H5404_09205 PF17764 3′ DNA-binding domain (3′BD) H5404_09210 PF01197 Ribosomal protein L31 H5404_09215 PF00338 Ribosomal protein S10p/S20e H5404_09220 PF00297 Ribosomal protein L3 H5404_09225 PF00573 Ribosomal protein L4/L1 family H5404_09230 PF00276 Ribosomal protein L23 H5404_09235 PF00181 Ribosomal Proteins L2, RNA binding domain H5404_09235 PF03947 Ribosomal Proteins L2, C-terminal domain H5404_09240 PF00203 Ribosomal protein S19 H5404_09245 PF00237 Ribosomal protein L22p/L17e H5404_09250 PF07650 KH domain H5404_09250 PF00189 Ribosomal protein S3, C-terminal domain H5404_09255 PF00252 Ribosomal protein L16p/L10e H5404_09260 PF00831 Ribosomal L29 protein H5404_09265 PF00366 Ribosomal protein S17 H5404_09270 PF00238 Ribosomal protein L14p/L23e H5404_09275 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 H5404_09275 PF00467 KOW motif H5404_09280 PF00281 Ribosomal protein L5 H5404_09280 PF00673 ribosomal L5P family C-terminus H5404_09285 PF00253 Ribosomal protein S14p/S29e H5404_09290 PF00410 Ribosomal protein S8 H5404_09295 PF00347 Ribosomal protein L6 H5404_09300 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast H5404_09305 PF00333 Ribosomal protein S5, N-terminal domain H5404_09305 PF03719 Ribosomal protein S5, C-terminal domain H5404_09310 PF00327 Ribosomal protein L30p/L7e H5404_09315 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A H5404_09320 PF00344 SecY translocase H5404_09325 PF00444 Ribosomal protein L36 H5404_09330 PF00416 Ribosomal protein S13/S18 H5404_09335 PF00411 Ribosomal protein S11 H5404_09340 PF01479 S4 domain H5404_09340 PF00163 Ribosomal protein S4/S9 N-terminal domain H5404_09345 PF01000 RNA polymerase Rpb3/RpoA insert domain H5404_09345 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain H5404_09345 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain H5404_09350 PF01196 Ribosomal protein L17 H5404_09360 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase H5404_09360 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase H5404_09370 PF13673 Acetyltransferase (GNAT) domain H5404_09375 PF00271 Helicase conserved C-terminal domain H5404_09375 PF03880 DbpA RNA binding domain H5404_09375 PF00270 DEAD/DEAH box helicase H5404_09385 PF02872 5'-nucleotidase, C-terminal domain H5404_09385 PF00149 Calcineurin-like phosphoesterase H5404_09390 PF10414 Sirohaem synthase dimerisation region H5404_09390 PF14824 Sirohaem biosynthesis protein central H5404_09390 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases H5404_09395 PF01507 Phosphoadenosine phosphosulfate reductase family H5404_09400 PF00009 Elongation factor Tu GTP binding domain H5404_09405 PF03600 Citrate transporter H5404_09405 PF02080 TrkA-C domain H5404_09430 PF00005 ABC transporter H5404_09440 PF10795 Protein of unknown function (DUF2607) H5404_09445 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) H5404_09450 PF06526 Protein of unknown function (DUF1107) H5404_09455 PF01625 Peptide methionine sulfoxide reductase H5404_09460 PF01103 Surface antigen H5404_09460 PF17243 POTRA domain TamA domain 1 H5404_09465 PF04357 TamB, inner membrane protein subunit of TAM complex H5404_09470 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like H5404_09480 PF00719 Inorganic pyrophosphatase H5404_09485 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain H5404_09490 PF02875 Mur ligase family, glutamate ligase domain H5404_09490 PF01225 Mur ligase family, catalytic domain H5404_09490 PF08245 Mur ligase middle domain H5404_09495 PF02441 Flavoprotein H5404_09505 PF00528 Binding-protein-dependent transport system inner membrane component H5404_09510 PF00005 ABC transporter H5404_09525 PF16868 NMT1-like family H5404_09530 PF01316 Arginine repressor, DNA binding domain H5404_09530 PF02863 Arginine repressor, C-terminal domain H5404_09535 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain H5404_09535 PF00056 lactate/malate dehydrogenase, NAD binding domain H5404_09545 PF00348 Polyprenyl synthetase H5404_09550 PF00829 Ribosomal prokaryotic L21 protein H5404_09555 PF01016 Ribosomal L27 protein H5404_09560 PF01018 GTP1/OBG H5404_09560 PF01926 50S ribosome-binding GTPase H5404_09565 PF06738 Putative threonine/serine exporter H5404_09570 PF12821 Threonine/Serine exporter, ThrE H5404_09575 PF00186 Dihydrofolate reductase H5404_09580 PF00149 Calcineurin-like phosphoesterase H5404_09585 PF04379 ApaG domain H5404_09590 PF00398 Ribosomal RNA adenine dimethylase H5404_09595 PF04166 Pyridoxal phosphate biosynthetic protein PdxA H5404_09600 PF09312 SurA N-terminal domain H5404_09605 PF03968 OstA-like protein H5404_09605 PF04453 LPS transport system D H5404_09610 PF00226 DnaJ domain H5404_09610 PF05099 Tellurite resistance protein TerB H5404_09620 PF00694 Aconitase C-terminal domain H5404_09625 PF00330 Aconitase family (aconitate hydratase) H5404_09630 PF00180 Isocitrate/isopropylmalate dehydrogenase H5404_09635 PF08502 LeuA allosteric (dimerisation) domain H5404_09635 PF00682 HMGL-like H5404_09645 PF01569 PAP2 superfamily H5404_09655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_09655 PF03466 LysR substrate binding domain H5404_09660 PF00501 AMP-binding enzyme H5404_09665 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain H5404_09665 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain H5404_09665 PF00205 Thiamine pyrophosphate enzyme, central domain H5404_09670 PF10369 Small subunit of acetolactate synthase H5404_09675 PF00990 Diguanylate cyclase, GGDEF domain H5404_09685 PF02887 Pyruvate kinase, alpha/beta domain H5404_09685 PF00224 Pyruvate kinase, barrel domain H5404_09690 PF08220 DeoR-like helix-turn-helix domain H5404_09690 PF00455 DeoR C terminal sensor domain H5404_09695 PF01380 SIS domain H5404_09705 PF00072 Response regulator receiver domain H5404_09705 PF00486 Transcriptional regulatory protein, C terminal H5404_09710 PF00672 HAMP domain H5404_09710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_09710 PF00512 His Kinase A (phospho-acceptor) domain H5404_09715 PF00465 Iron-containing alcohol dehydrogenase H5404_09720 PF02733 Dak1 domain H5404_09725 PF02734 DAK2 domain H5404_09730 PF02896 PEP-utilising enzyme, TIM barrel domain H5404_09730 PF05524 PEP-utilising enzyme, N-terminal H5404_09730 PF00391 PEP-utilising enzyme, mobile domain H5404_09735 PF00158 Sigma-54 interaction domain H5404_09735 PF00989 PAS fold H5404_09735 PF02954 Bacterial regulatory protein, Fis family H5404_09740 PF05068 Mannitol repressor H5404_09745 PF08125 Mannitol dehydrogenase C-terminal domain H5404_09745 PF01232 Mannitol dehydrogenase Rossmann domain H5404_09750 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit H5404_09750 PF02378 Phosphotransferase system, EIIC H5404_09750 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 H5404_09780 PF03180 NLPA lipoprotein H5404_09815 PF13411 MerR HTH family regulatory protein H5404_09835 PF01420 Type I restriction modification DNA specificity domain H5404_09840 PF02384 N-6 DNA Methylase H5404_09840 PF12161 HsdM N-terminal domain H5404_09860 PF01555 DNA methylase H5404_09865 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) H5404_09865 PF00271 Helicase conserved C-terminal domain H5404_09865 PF08463 EcoEI R protein C-terminal H5404_09865 PF04851 Type III restriction enzyme, res subunit H5404_09880 PF00872 Transposase, Mutator family H5404_09890 PF00529 HlyD membrane-fusion protein of T1SS H5404_09890 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H5404_09920 PF04546 Sigma-70, non-essential region H5404_09920 PF00140 Sigma-70 factor, region 1.2 H5404_09920 PF04542 Sigma-70 region 2 H5404_09920 PF04545 Sigma-70, region 4 H5404_09920 PF04539 Sigma-70 region 3 H5404_09920 PF03979 Sigma-70 factor, region 1.1 H5404_09925 PF01807 CHC2 zinc finger H5404_09925 PF08275 DNA primase catalytic core, N-terminal domain H5404_09925 PF08278 DNA primase DnaG DnaB-binding H5404_09925 PF10410 DnaB-helicase binding domain of primase H5404_09930 PF09424 Yqey-like protein H5404_09935 PF01165 Ribosomal protein S21 H5404_09940 PF00814 Glycoprotease family H5404_09945 PF12697 Alpha/beta hydrolase family H5404_09950 PF02660 Glycerol-3-phosphate acyltransferase H5404_09955 PF02152 Dihydroneopterin aldolase H5404_09960 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) H5404_09965 PF02673 Bacitracin resistance protein BacA H5404_09970 PF01743 Poly A polymerase head domain H5404_09970 PF01966 HD domain H5404_09970 PF12627 Probable RNA and SrmB- binding site of polymerase A H5404_09975 PF01471 Putative peptidoglycan binding domain H5404_09975 PF13401 AAA domain H5404_09985 PF08239 Bacterial SH3 domain H5404_09990 PF01384 Phosphate transporter family H5404_09995 PF01865 Protein of unknown function DUF47 H5404_10000 PF01928 CYTH domain H5404_10010 PF00672 HAMP domain H5404_10010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_10015 PF03710 Glutamate-ammonia ligase adenylyltransferase H5404_10015 PF08335 GlnD PII-uridylyltransferase H5404_10020 PF00294 pfkB family carbohydrate kinase H5404_10020 PF01467 Cytidylyltransferase-like H5404_10025 PF02321 Outer membrane efflux protein H5404_10030 PF00293 NUDIX domain H5404_10035 PF06853 Protein of unknown function (DUF1249) H5404_10040 PF00149 Calcineurin-like phosphoesterase H5404_10045 PF05728 Uncharacterised protein family (UPF0227) H5404_10050 PF01751 Toprim domain H5404_10050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_10050 PF00204 DNA gyrase B H5404_10050 PF00986 DNA gyrase B subunit, carboxyl terminus H5404_10055 PF03989 DNA gyrase C-terminal domain, beta-propeller H5404_10055 PF00521 DNA gyrase/topoisomerase IV, subunit A H5404_10060 PF13180 PDZ domain H5404_10065 PF00595 PDZ domain H5404_10070 PF06295 Protein of unknown function (DUF1043) H5404_10075 PF03969 AFG1-like ATPase H5404_10080 PF00572 Ribosomal protein L13 H5404_10085 PF00380 Ribosomal protein S9/S16 H5404_10090 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal H5404_10090 PF00355 Rieske [2Fe-2S] domain H5404_10095 PF00033 Cytochrome b/b6/petB H5404_10095 PF00032 Cytochrome b(C-terminal)/b6/petD H5404_10100 PF02167 Cytochrome C1 family H5404_10105 PF02798 Glutathione S-transferase, N-terminal domain H5404_10105 PF00043 Glutathione S-transferase, C-terminal domain H5404_10110 PF04386 Stringent starvation protein B H5404_10115 PF04972 BON domain H5404_10120 PF13580 SIS domain H5404_10125 PF02021 Uncharacterised protein family UPF0102 H5404_10130 PF04348 LppC putative lipoprotein H5404_10135 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases H5404_10145 PF01795 MraW methylase family H5404_10150 PF04999 Cell division protein FtsL H5404_10155 PF03717 Penicillin-binding Protein dimerisation domain H5404_10155 PF00905 Penicillin binding protein transpeptidase domain H5404_10160 PF08245 Mur ligase middle domain H5404_10160 PF02875 Mur ligase family, glutamate ligase domain H5404_10160 PF01225 Mur ligase family, catalytic domain H5404_10165 PF08245 Mur ligase middle domain H5404_10165 PF02875 Mur ligase family, glutamate ligase domain H5404_10165 PF01225 Mur ligase family, catalytic domain H5404_10170 PF00953 Glycosyl transferase family 4 H5404_10170 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 H5404_10175 PF02875 Mur ligase family, glutamate ligase domain H5404_10175 PF08245 Mur ligase middle domain H5404_10180 PF01098 Cell cycle protein H5404_10185 PF03033 Glycosyltransferase family 28 N-terminal domain H5404_10185 PF04101 Glycosyltransferase family 28 C-terminal domain H5404_10190 PF02875 Mur ligase family, glutamate ligase domain H5404_10190 PF01225 Mur ligase family, catalytic domain H5404_10190 PF08245 Mur ligase middle domain H5404_10195 PF03799 Cell division protein FtsQ H5404_10195 PF08478 POTRA domain, FtsQ-type H5404_10200 PF02491 SHS2 domain inserted in FTSA H5404_10205 PF00091 Tubulin/FtsZ family, GTPase domain H5404_10205 PF12327 FtsZ family, C-terminal domain H5404_10210 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase H5404_10220 PF02810 SEC-C motif H5404_10220 PF07517 SecA DEAD-like domain H5404_10220 PF07516 SecA Wing and Scaffold domain H5404_10220 PF01043 SecA preprotein cross-linking domain H5404_10225 PF00293 NUDIX domain H5404_10230 PF01113 Dihydrodipicolinate reductase, N-terminus H5404_10230 PF05173 Dihydrodipicolinate reductase, C-terminus H5404_10235 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain H5404_10235 PF00117 Glutamine amidotransferase class-I H5404_10240 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain H5404_10240 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain H5404_10240 PF02142 MGS-like domain H5404_10255 PF01925 Sulfite exporter TauE/SafE H5404_10260 PF03466 LysR substrate binding domain H5404_10260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_10265 PF03458 UPF0126 domain H5404_10270 PF01497 Periplasmic binding protein H5404_10275 PF17113 Regulatory signalling modulator protein AmpE H5404_10275 PF03186 CobD/Cbib protein H5404_10280 PF01048 Phosphorylase superfamily H5404_10290 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5404_10290 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster H5404_10295 PF01493 GXGXG motif H5404_10295 PF01645 Conserved region in glutamate synthase H5404_10295 PF04898 Glutamate synthase central domain H5404_10295 PF00310 Glutamine amidotransferases class-II H5404_10300 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5404_10300 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster H5404_10305 PF01493 GXGXG motif H5404_10305 PF01645 Conserved region in glutamate synthase H5404_10305 PF00310 Glutamine amidotransferases class-II H5404_10305 PF04898 Glutamate synthase central domain H5404_10310 PF16199 Radical_SAM C-terminal domain H5404_10310 PF04055 Radical SAM superfamily H5404_10315 PF01590 GAF domain H5404_10315 PF00990 Diguanylate cyclase, GGDEF domain H5404_10315 PF00360 Phytochrome region H5404_10315 PF00563 EAL domain H5404_10320 PF01627 Hpt domain H5404_10320 PF00989 PAS fold H5404_10320 PF00512 His Kinase A (phospho-acceptor) domain H5404_10320 PF00072 Response regulator receiver domain H5404_10320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_10320 PF18415 Histidine kinase receptor ArcB trans-membrane domain H5404_10330 PF00486 Transcriptional regulatory protein, C terminal H5404_10330 PF00072 Response regulator receiver domain H5404_10340 PF03737 Aldolase/RraA H5404_10350 PF00742 Homoserine dehydrogenase H5404_10350 PF13840 ACT domain H5404_10350 PF01842 ACT domain H5404_10350 PF03447 Homoserine dehydrogenase, NAD binding domain H5404_10350 PF00696 Amino acid kinase family H5404_10355 PF08544 GHMP kinases C terminal H5404_10355 PF00288 GHMP kinases N terminal domain H5404_10360 PF00291 Pyridoxal-phosphate dependent enzyme H5404_10360 PF14821 Threonine synthase N terminus H5404_10365 PF01228 Glycine radical H5404_10370 PF01261 Xylose isomerase-like TIM barrel H5404_10375 PF03167 Uracil DNA glycosylase superfamily H5404_10390 PF01235 Sodium:alanine symporter family H5404_10395 PF03883 Peroxide stress protein YaaA H5404_10400 PF00271 Helicase conserved C-terminal domain H5404_10400 PF00270 DEAD/DEAH box helicase H5404_10405 PF05175 Methyltransferase small domain H5404_10410 PF05525 Branched-chain amino acid transport protein H5404_10415 PF00258 Flavodoxin H5404_10420 PF00589 Phage integrase family H5404_10420 PF02899 Phage integrase, N-terminal SAM-like domain H5404_10425 PF10411 Disulfide bond isomerase protein N-terminus H5404_10425 PF13098 Thioredoxin-like domain H5404_10430 PF17768 RecJ OB domain H5404_10430 PF02272 DHHA1 domain H5404_10430 PF01368 DHH family H5404_10440 PF00152 tRNA synthetases class II (D, K and N) H5404_10440 PF01336 OB-fold nucleic acid binding domain H5404_10445 PF00072 Response regulator receiver domain H5404_10445 PF00158 Sigma-54 interaction domain H5404_10445 PF02954 Bacterial regulatory protein, Fis family H5404_10455 PF00248 Aldo/keto reductase family H5404_10465 PF02976 DNA mismatch repair enzyme MutH H5404_10470 PF00293 NUDIX domain H5404_10475 PF01590 GAF domain H5404_10475 PF05524 PEP-utilising enzyme, N-terminal H5404_10475 PF00391 PEP-utilising enzyme, mobile domain H5404_10475 PF02896 PEP-utilising enzyme, TIM barrel domain H5404_10480 PF01925 Sulfite exporter TauE/SafE H5404_10485 PF01790 Prolipoprotein diacylglyceryl transferase H5404_10495 PF00303 Thymidylate synthase H5404_10510 PF01381 Helix-turn-helix H5404_10520 PF07804 HipA-like C-terminal domain H5404_10520 PF13657 HipA N-terminal domain H5404_10545 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H5404_10545 PF00529 HlyD membrane-fusion protein of T1SS H5404_10555 PF14490 Helix-hairpin-helix containing domain H5404_10555 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain H5404_10555 PF13538 UvrD-like helicase C-terminal domain H5404_10575 PF00589 Phage integrase family H5404_10575 PF02899 Phage integrase, N-terminal SAM-like domain H5404_10590 PF02690 Na+/Pi-cotransporter H5404_10595 PF03466 LysR substrate binding domain H5404_10595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_10600 PF01022 Bacterial regulatory protein, arsR family H5404_10605 PF01649 Ribosomal protein S20 H5404_10610 PF03023 Lipid II flippase MurJ H5404_10615 PF06574 FAD synthetase H5404_10615 PF01687 Riboflavin kinase H5404_10620 PF06827 Zinc finger found in FPG and IleRS H5404_10620 PF00133 tRNA synthetases class I (I, L, M and V) H5404_10620 PF08264 Anticodon-binding domain of tRNA H5404_10625 PF01252 Signal peptidase (SPase) II H5404_10630 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase H5404_10635 PF02401 LytB protein H5404_10640 PF04397 LytTr DNA-binding domain H5404_10640 PF00072 Response regulator receiver domain H5404_10645 PF06580 Histidine kinase H5404_10645 PF07694 5TMR of 5TMR-LYT H5404_10650 PF02554 Carbon starvation protein CstA H5404_10665 PF13580 SIS domain H5404_10670 PF03702 Anhydro-N-acetylmuramic acid kinase H5404_10675 PF00933 Glycosyl hydrolase family 3 N terminal domain H5404_10680 PF00793 DAHP synthetase I family H5404_10685 PF02153 Prephenate dehydrogenase H5404_10685 PF01817 Chorismate mutase type II H5404_10690 PF04225 Opacity-associated protein A LysM-like domain H5404_10690 PF01551 Peptidase family M23 H5404_10695 PF07238 PilZ domain H5404_10700 PF12848 ABC transporter H5404_10700 PF00005 ABC transporter H5404_10705 PF14718 Soluble lytic murein transglycosylase L domain H5404_10705 PF01464 Transglycosylase SLT domain H5404_10710 PF01371 Trp repressor protein H5404_10715 PF01931 Protein of unknown function DUF84 H5404_10720 PF01817 Chorismate mutase type II H5404_10720 PF00800 Prephenate dehydratase H5404_10725 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein H5404_10730 PF01464 Transglycosylase SLT domain H5404_10735 PF13525 Outer membrane lipoprotein H5404_10740 PF00849 RNA pseudouridylate synthase H5404_10740 PF01479 S4 domain H5404_10745 PF02578 Multi-copper polyphenol oxidoreductase laccase H5404_10750 PF17871 AAA lid domain H5404_10750 PF02861 Clp amino terminal domain, pathogenicity island component H5404_10750 PF00004 ATPase family associated with various cellular activities (AAA) H5404_10750 PF10431 C-terminal, D2-small domain, of ClpB protein H5404_10750 PF07724 AAA domain (Cdc48 subfamily) H5404_10795 PF03411 Penicillin-insensitive murein endopeptidase H5404_10805 PF00037 4Fe-4S binding domain H5404_10810 PF16325 Peptidase family U32 C-terminal domain H5404_10810 PF01136 Peptidase family U32 H5404_10815 PF04381 Putative exonuclease, RdgC H5404_10820 PF00072 Response regulator receiver domain H5404_10820 PF00486 Transcriptional regulatory protein, C terminal H5404_10825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_10825 PF00512 His Kinase A (phospho-acceptor) domain H5404_10825 PF11808 Phosphate regulon sensor protein PhoR H5404_10825 PF00989 PAS fold H5404_10830 PF12849 PBP superfamily domain H5404_10835 PF02541 Ppx/GppA phosphatase family H5404_10840 PF13090 Polyphosphate kinase C-terminal domain 2 H5404_10840 PF17941 Polyphosphate kinase C-terminal domain 1 H5404_10840 PF13089 Polyphosphate kinase N-terminal domain H5404_10840 PF02503 Polyphosphate kinase middle domain H5404_10845 PF00528 Binding-protein-dependent transport system inner membrane component H5404_10850 PF00528 Binding-protein-dependent transport system inner membrane component H5404_10855 PF00005 ABC transporter H5404_10860 PF01895 PhoU domain H5404_10865 PF03976 Polyphosphate kinase 2 (PPK2) H5404_10870 PF03932 CutC family H5404_10875 PF00578 AhpC/TSA family H5404_10875 PF10417 C-terminal domain of 1-Cys peroxiredoxin H5404_10880 PF03466 LysR substrate binding domain H5404_10880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_10885 PF01274 Malate synthase H5404_10890 PF00463 Isocitrate lyase family H5404_10895 PF00571 CBS domain H5404_10905 PF02547 Queuosine biosynthesis protein H5404_10910 PF01702 Queuine tRNA-ribosyltransferase H5404_10915 PF02699 Preprotein translocase subunit H5404_10920 PF02355 Protein export membrane protein H5404_10920 PF07549 SecD/SecF GG Motif H5404_10920 PF13721 SecD export protein N-terminal TM region H5404_10925 PF07549 SecD/SecF GG Motif H5404_10925 PF02355 Protein export membrane protein H5404_10930 PF00459 Inositol monophosphatase family H5404_10935 PF00588 SpoU rRNA Methylase family H5404_10940 PF02082 Transcriptional regulator H5404_10945 PF00266 Aminotransferase class-V H5404_10950 PF01592 NifU-like N terminal domain H5404_10955 PF01521 Iron-sulphur cluster biosynthesis H5404_10960 PF07743 HSCB C-terminal oligomerisation domain H5404_10960 PF00226 DnaJ domain H5404_10965 PF00012 Hsp70 protein H5404_10970 PF00111 2Fe-2S iron-sulfur cluster binding domain H5404_10975 PF04384 Iron-sulphur cluster assembly H5404_10980 PF12404 Peptidase H5404_10980 PF00883 Cytosol aminopeptidase family, catalytic domain H5404_10985 PF00334 Nucleoside diphosphate kinase H5404_10990 PF04055 Radical SAM superfamily H5404_10995 PF13464 Domain of unknown function (DUF4115) H5404_11000 PF04551 GcpE protein H5404_11005 PF13393 Histidyl-tRNA synthetase H5404_11005 PF03129 Anticodon binding domain H5404_11010 PF09976 Tetratricopeptide repeat-like domain H5404_11015 PF13360 PQQ-like domain H5404_11020 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal H5404_11020 PF01926 50S ribosome-binding GTPase H5404_11035 PF02601 Exonuclease VII, large subunit H5404_11035 PF13742 OB-fold nucleic acid binding domain H5404_11040 PF00571 CBS domain H5404_11040 PF00478 IMP dehydrogenase / GMP reductase domain H5404_11045 PF00117 Glutamine amidotransferase class-I H5404_11045 PF00958 GMP synthase C terminal domain H5404_11045 PF02540 NAD synthase H5404_11050 PF03553 Na+/H+ antiporter family H5404_11055 PF06483 Chitinase C H5404_11055 PF00704 Glycosyl hydrolases family 18 H5404_11060 PF01184 GPR1/FUN34/yaaH family H5404_11070 PF01235 Sodium:alanine symporter family H5404_11075 PF01266 FAD dependent oxidoreductase H5404_11080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_11080 PF03466 LysR substrate binding domain H5404_11095 PF07969 Amidohydrolase family H5404_11100 PF01053 Cys/Met metabolism PLP-dependent enzyme H5404_11105 PF00202 Aminotransferase class-III H5404_11125 PF00583 Acetyltransferase (GNAT) family H5404_11125 PF00795 Carbon-nitrogen hydrolase H5404_11130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_11130 PF03466 LysR substrate binding domain H5404_11170 PF00145 C-5 cytosine-specific DNA methylase H5404_11255 PF00313 'Cold-shock' DNA-binding domain H5404_11275 PF00313 'Cold-shock' DNA-binding domain H5404_11300 PF00239 Resolvase, N terminal domain H5404_11300 PF02796 Helix-turn-helix domain of resolvase H5404_11305 PF09217 Restriction endonuclease EcoRII, N-terminal H5404_11305 PF09019 EcoRII C terminal H5404_11310 PF00145 C-5 cytosine-specific DNA methylase H5404_11310 PF18284 DNA methylase N-terminal domain H5404_11325 PF00589 Phage integrase family H5404_11325 PF13356 Arm DNA-binding domain H5404_11335 PF01668 SmpB protein H5404_11340 PF03364 Polyketide cyclase / dehydrase and lipid transport H5404_11345 PF03658 RnfH family Ubiquitin H5404_11350 PF04355 SmpA / OmlA family H5404_11355 PF02463 RecF/RecN/SMC N terminal domain H5404_11365 PF01513 ATP-NAD kinase H5404_11370 PF01025 GrpE H5404_11375 PF00375 Sodium:dicarboxylate symporter family H5404_11380 PF00012 Hsp70 protein H5404_11385 PF00226 DnaJ domain H5404_11385 PF01556 DnaJ C terminal domain H5404_11385 PF00684 DnaJ central domain H5404_11390 PF00114 Pilin (bacterial filament) H5404_11390 PF07963 Prokaryotic N-terminal methylation motif H5404_11395 PF00114 Pilin (bacterial filament) H5404_11395 PF07963 Prokaryotic N-terminal methylation motif H5404_11415 PF03806 AbgT putative transporter family H5404_11420 PF14437 MafB19-like deaminase H5404_11425 PF00497 Bacterial extracellular solute-binding proteins, family 3 H5404_11425 PF01464 Transglycosylase SLT domain H5404_11430 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain H5404_11430 PF02769 AIR synthase related protein, C-terminal domain H5404_11430 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal H5404_11455 PF07687 Peptidase dimerisation domain H5404_11455 PF01546 Peptidase family M20/M25/M40 H5404_11460 PF00860 Permease family H5404_11465 PF00156 Phosphoribosyl transferase domain H5404_11470 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) H5404_11475 PF07417 Sigma factor-binding transcriptional regulator Crl H5404_11480 PF01472 PUA domain H5404_11480 PF00696 Amino acid kinase family H5404_11485 PF00171 Aldehyde dehydrogenase family H5404_11490 PF03477 ATP cone domain H5404_11495 PF01872 RibD C-terminal domain H5404_11495 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region H5404_11500 PF00677 Lumazine binding domain H5404_11505 PF00925 GTP cyclohydrolase II H5404_11505 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase H5404_11510 PF00885 6,7-dimethyl-8-ribityllumazine synthase H5404_11515 PF01029 NusB family H5404_11520 PF00586 AIR synthase related protein, N-terminal domain H5404_11520 PF02769 AIR synthase related protein, C-terminal domain H5404_11525 PF04608 Phosphatidylglycerophosphatase A H5404_11530 PF02780 Transketolase, C-terminal domain H5404_11530 PF02779 Transketolase, pyrimidine binding domain H5404_11530 PF13292 1-deoxy-D-xylulose-5-phosphate synthase H5404_11535 PF00348 Polyprenyl synthetase H5404_11540 PF02609 Exonuclease VII small subunit H5404_11545 PF01618 MotA/TolQ/ExbB proton channel family H5404_11550 PF00691 OmpA family H5404_11555 PF02926 THUMP domain H5404_11555 PF02568 Thiamine biosynthesis protein (ThiI) H5404_11560 PF03466 LysR substrate binding domain H5404_11560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_11570 PF04241 Protein of unknown function (DUF423) H5404_11575 PF01728 FtsJ-like methyltransferase H5404_11575 PF18125 RlmM ferredoxin-like domain H5404_11580 PF01223 DNA/RNA non-specific endonuclease H5404_11585 PF01367 5'-3' exonuclease, C-terminal SAM fold H5404_11585 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain H5404_11590 PF11892 Domain of unknown function (DUF3412) H5404_11590 PF03641 Possible lysine decarboxylase H5404_11590 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases H5404_11595 PF00990 Diguanylate cyclase, GGDEF domain H5404_11605 PF14489 QueF-like protein H5404_11605 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term H5404_11610 PF07348 Syd protein (SUKH-2) H5404_11615 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) H5404_11620 PF03180 NLPA lipoprotein H5404_11625 PF00528 Binding-protein-dependent transport system inner membrane component H5404_11630 PF09383 NIL domain H5404_11630 PF00005 ABC transporter H5404_11640 PF00356 Bacterial regulatory proteins, lacI family H5404_11645 PF00367 phosphotransferase system, EIIB H5404_11645 PF02378 Phosphotransferase system, EIIC H5404_11650 PF00128 Alpha amylase, catalytic domain H5404_11650 PF16657 Maltogenic Amylase, C-terminal domain H5404_11665 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) H5404_11665 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 H5404_11670 PF00464 Serine hydroxymethyltransferase H5404_11675 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family H5404_11675 PF04055 Radical SAM superfamily H5404_11680 PF03099 Biotin/lipoate A/B protein ligase family H5404_11685 PF04359 Protein of unknown function (DUF493) H5404_11690 PF00768 D-alanyl-D-alanine carboxypeptidase H5404_11690 PF07943 Penicillin-binding protein 5, C-terminal domain H5404_11695 PF03330 Lytic transglycolase H5404_11695 PF05036 Sporulation related domain H5404_11700 PF01098 Cell cycle protein H5404_11705 PF03717 Penicillin-binding Protein dimerisation domain H5404_11705 PF00905 Penicillin binding protein transpeptidase domain H5404_11710 PF02590 Predicted SPOUT methyltransferase H5404_11720 PF14840 Processivity clamp loader gamma complex DNA pol III C-term H5404_11720 PF06144 DNA polymerase III, delta subunit H5404_11725 PF04390 Lipopolysaccharide-assembly H5404_11730 PF13603 Leucyl-tRNA synthetase, Domain 2 H5404_11730 PF08264 Anticodon-binding domain of tRNA H5404_11730 PF00133 tRNA synthetases class I (I, L, M and V) H5404_11735 PF07295 Zinc-ribbon containing domain H5404_11740 PF00795 Carbon-nitrogen hydrolase H5404_11745 PF00571 CBS domain H5404_11745 PF03471 Transporter associated domain H5404_11750 PF02130 Uncharacterized protein family UPF0054 H5404_11755 PF02562 PhoH-like protein H5404_11760 PF01938 TRAM domain H5404_11760 PF04055 Radical SAM superfamily H5404_11760 PF00919 Uncharacterized protein family UPF0004 H5404_11765 PF01494 FAD binding domain H5404_11880 PF01926 50S ribosome-binding GTPase H5404_11880 PF06071 Protein of unknown function (DUF933) H5404_11885 PF01195 Peptidyl-tRNA hydrolase H5404_11890 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase H5404_11890 PF14572 Phosphoribosyl synthetase-associated domain H5404_11895 PF00288 GHMP kinases N terminal domain H5404_11895 PF08544 GHMP kinases C terminal H5404_11900 PF03550 Outer membrane lipoprotein LolB H5404_11905 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain H5404_11905 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain H5404_11905 PF01488 Shikimate / quinate 5-dehydrogenase H5404_11910 PF00472 RF-1 domain H5404_11910 PF03462 PCRF domain H5404_11915 PF13847 Methyltransferase domain H5404_11915 PF17827 PrmC N-terminal domain H5404_11920 PF04247 Invasion gene expression up-regulator, SirB H5404_11925 PF13369 Transglutaminase-like superfamily H5404_11930 PF00793 DAHP synthetase I family H5404_11935 PF00149 Calcineurin-like phosphoesterase H5404_11935 PF02872 5'-nucleotidase, C-terminal domain H5404_11940 PF04073 Aminoacyl-tRNA editing domain H5404_11945 PF01479 S4 domain H5404_11945 PF00849 RNA pseudouridylate synthase H5404_11950 PF01713 Smr domain H5404_11970 PF03173 Putative carbohydrate binding domain H5404_11970 PF00728 Glycosyl hydrolase family 20, catalytic domain H5404_11970 PF02838 Glycosyl hydrolase family 20, domain 2 H5404_11970 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain H5404_11985 PF00403 Heavy-metal-associated domain H5404_11990 PF13609 Gram-negative porin H5404_11995 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) H5404_12000 PF00749 tRNA synthetases class I (E and Q), catalytic domain H5404_12005 PF01389 OmpA-like transmembrane domain H5404_12005 PF00691 OmpA family H5404_12050 PF00072 Response regulator receiver domain H5404_12050 PF01584 CheW-like domain H5404_12055 PF01739 CheR methyltransferase, SAM binding domain H5404_12055 PF03705 CheR methyltransferase, all-alpha domain H5404_12060 PF00460 Flagella basal body rod protein H5404_12065 PF00460 Flagella basal body rod protein H5404_12065 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H5404_12070 PF13861 FlgD Tudor-like domain H5404_12070 PF03963 Flagellar hook capping protein - N-terminal region H5404_12070 PF13860 FlgD Ig-like domain H5404_12075 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H5404_12075 PF07559 Flagellar basal body protein FlaE H5404_12075 PF00460 Flagella basal body rod protein H5404_12080 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H5404_12080 PF00460 Flagella basal body rod protein H5404_12085 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H5404_12085 PF00460 Flagella basal body rod protein H5404_12090 PF02107 Flagellar L-ring protein H5404_12095 PF02119 Flagellar P-ring protein H5404_12100 PF10135 Rod binding protein H5404_12100 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase H5404_12105 PF07196 Flagellin hook IN motif H5404_12105 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H5404_12110 PF00669 Bacterial flagellin N-terminal helical region H5404_12115 PF00669 Bacterial flagellin N-terminal helical region H5404_12115 PF07196 Flagellin hook IN motif H5404_12115 PF00700 Bacterial flagellin C-terminal helical region H5404_12120 PF00669 Bacterial flagellin N-terminal helical region H5404_12120 PF00700 Bacterial flagellin C-terminal helical region H5404_12120 PF07196 Flagellin hook IN motif H5404_12125 PF00669 Bacterial flagellin N-terminal helical region H5404_12125 PF00700 Bacterial flagellin C-terminal helical region H5404_12125 PF07196 Flagellin hook IN motif H5404_12130 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 H5404_12135 PF05524 PEP-utilising enzyme, N-terminal H5404_12135 PF02896 PEP-utilising enzyme, TIM barrel domain H5404_12135 PF00391 PEP-utilising enzyme, mobile domain H5404_12140 PF00381 PTS HPr component phosphorylation site H5404_12145 PF00291 Pyridoxal-phosphate dependent enzyme H5404_12155 PF04354 ZipA, C-terminal FtsZ-binding domain H5404_12160 PF01653 NAD-dependent DNA ligase adenylation domain H5404_12160 PF03120 NAD-dependent DNA ligase OB-fold domain H5404_12160 PF12826 Helix-hairpin-helix motif H5404_12160 PF03119 NAD-dependent DNA ligase C4 zinc finger domain H5404_12160 PF00533 BRCA1 C Terminus (BRCT) domain H5404_12165 PF03573 outer membrane porin, OprD family H5404_12180 PF16200 C-terminal region of band_7 H5404_12180 PF01145 SPFH domain / Band 7 family H5404_12185 PF00085 Thioredoxin H5404_12190 PF00106 short chain dehydrogenase H5404_12195 PF08338 Domain of unknown function (DUF1731) H5404_12195 PF01370 NAD dependent epimerase/dehydratase family H5404_12200 PF07556 Protein of unknown function (DUF1538) H5404_12205 PF07556 Protein of unknown function (DUF1538) H5404_12220 PF12850 Calcineurin-like phosphoesterase superfamily domain H5404_12235 PF17323 Trans-membrane regulatory protein ToxS H5404_12240 PF00486 Transcriptional regulatory protein, C terminal H5404_12245 PF00183 Hsp90 protein H5404_12245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_12250 PF05191 Adenylate kinase, active site lid H5404_12255 PF00762 Ferrochelatase H5404_12260 PF00854 POT family H5404_12265 PF02357 Transcription termination factor nusG H5404_12270 PF00733 Asparagine synthase H5404_12270 PF13537 Glutamine amidotransferase domain H5404_12275 PF00999 Sodium/hydrogen exchanger family H5404_12275 PF02254 TrkA-N domain H5404_12280 PF01047 MarR family H5404_12280 PF00480 ROK family H5404_12285 PF01979 Amidohydrolase family H5404_12290 PF00367 phosphotransferase system, EIIB H5404_12290 PF02378 Phosphotransferase system, EIIC H5404_12295 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain H5404_12295 PF00749 tRNA synthetases class I (E and Q), catalytic domain H5404_12300 PF01475 Ferric uptake regulator family H5404_12310 PF00258 Flavodoxin H5404_12320 PF12697 Alpha/beta hydrolase family H5404_12325 PF17206 SeqA protein N-terminal domain H5404_12325 PF03925 SeqA protein C-terminal domain H5404_12330 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III H5404_12330 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II H5404_12330 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I H5404_12330 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain H5404_12340 PF01784 NIF3 (NGG1p interacting factor 3) H5404_12345 PF00285 Citrate synthase, C-terminal domain H5404_12350 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit H5404_12355 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit H5404_12360 PF00890 FAD binding domain H5404_12360 PF02910 Fumarate reductase flavoprotein C-term H5404_12365 PF13085 2Fe-2S iron-sulfur cluster binding domain H5404_12370 PF00676 Dehydrogenase E1 component H5404_12370 PF16870 2-oxoglutarate dehydrogenase C-terminal H5404_12370 PF02779 Transketolase, pyrimidine binding domain H5404_12370 PF16078 2-oxoglutarate dehydrogenase N-terminus H5404_12375 PF00364 Biotin-requiring enzyme H5404_12375 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) H5404_12375 PF02817 e3 binding domain H5404_12380 PF00549 CoA-ligase H5404_12380 PF08442 ATP-grasp domain H5404_12385 PF00549 CoA-ligase H5404_12385 PF02629 CoA binding domain H5404_12390 PF00950 ABC 3 transport family H5404_12395 PF00005 ABC transporter H5404_12400 PF01297 Zinc-uptake complex component A periplasmic H5404_12405 PF12833 Helix-turn-helix domain H5404_12405 PF02311 AraC-like ligand binding domain H5404_12410 PF04023 FeoA domain H5404_12415 PF07670 Nucleoside recognition H5404_12415 PF02421 Ferrous iron transport protein B H5404_12415 PF17910 FeoB cytosolic helical domain H5404_12415 PF07664 Ferrous iron transport protein B C terminus H5404_12430 PF00750 tRNA synthetases class I (R) H5404_12430 PF05746 DALR anticodon binding domain H5404_12430 PF03485 Arginyl tRNA synthetase N terminal domain H5404_12435 PF06185 YecM protein H5404_12440 PF01842 ACT domain H5404_12440 PF00551 Formyl transferase H5404_12445 PF04851 Type III restriction enzyme, res subunit H5404_12445 PF13307 Helicase C-terminal domain H5404_12450 PF00814 Glycoprotease family H5404_12465 PF00561 alpha/beta hydrolase fold H5404_12470 PF00501 AMP-binding enzyme H5404_12470 PF13193 AMP-binding enzyme C-terminal domain H5404_12475 PF00570 HRDC domain H5404_12475 PF01612 3'-5' exonuclease H5404_12480 PF03776 Septum formation topological specificity factor MinE H5404_12485 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain H5404_12490 PF03775 Septum formation inhibitor MinC, C-terminal domain H5404_12490 PF05209 Septum formation inhibitor MinC, N-terminal domain H5404_12495 PF05166 YcgL domain H5404_12500 PF13406 Transglycosylase SLT domain H5404_12505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_12505 PF03466 LysR substrate binding domain H5404_12510 PF07670 Nucleoside recognition H5404_12510 PF07662 Na+ dependent nucleoside transporter C-terminus H5404_12510 PF01773 Na+ dependent nucleoside transporter N-terminus H5404_12515 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain H5404_12515 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain H5404_12530 PF00109 Beta-ketoacyl synthase, N-terminal domain H5404_12530 PF02801 Beta-ketoacyl synthase, C-terminal domain H5404_12540 PF07977 FabA-like domain H5404_12545 PF00109 Beta-ketoacyl synthase, N-terminal domain H5404_12545 PF02801 Beta-ketoacyl synthase, C-terminal domain H5404_12570 PF00221 Aromatic amino acid lyase H5404_12575 PF00535 Glycosyl transferase family 2 H5404_12580 PF07977 FabA-like domain H5404_12595 PF00550 Phosphopantetheine attachment site H5404_12600 PF00550 Phosphopantetheine attachment site H5404_12625 PF04820 Tryptophan halogenase H5404_12635 PF01595 Cyclin M transmembrane N-terminal domain H5404_12635 PF03471 Transporter associated domain H5404_12635 PF00571 CBS domain H5404_12640 PF00270 DEAD/DEAH box helicase H5404_12640 PF00271 Helicase conserved C-terminal domain H5404_12645 PF02254 TrkA-N domain H5404_12645 PF02080 TrkA-C domain H5404_12650 PF02386 Cation transport protein H5404_12665 PF02696 Uncharacterized ACR, YdiU/UPF0061 family H5404_12670 PF03480 Bacterial extracellular solute-binding protein, family 7 H5404_12675 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component H5404_12680 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component H5404_12690 PF02954 Bacterial regulatory protein, Fis family H5404_12690 PF00072 Response regulator receiver domain H5404_12690 PF00158 Sigma-54 interaction domain H5404_12695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_12695 PF00512 His Kinase A (phospho-acceptor) domain H5404_12695 PF02743 Cache domain H5404_12705 PF05697 Bacterial trigger factor protein (TF) H5404_12705 PF05698 Bacterial trigger factor protein (TF) C-terminus H5404_12705 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase H5404_12710 PF00574 Clp protease H5404_12715 PF07724 AAA domain (Cdc48 subfamily) H5404_12715 PF10431 C-terminal, D2-small domain, of ClpB protein H5404_12715 PF06689 ClpX C4-type zinc finger H5404_12720 PF02190 ATP-dependent protease La (LON) substrate-binding domain H5404_12720 PF00004 ATPase family associated with various cellular activities (AAA) H5404_12720 PF05362 Lon protease (S16) C-terminal proteolytic domain H5404_12725 PF00216 Bacterial DNA-binding protein H5404_12730 PF13145 PPIC-type PPIASE domain H5404_12750 PF13286 Phosphohydrolase-associated domain H5404_12750 PF01966 HD domain H5404_12760 PF00155 Aminotransferase class I and II H5404_12765 PF00425 chorismate binding enzyme H5404_12770 PF16582 Middle domain of thiamine pyrophosphate H5404_12770 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain H5404_12770 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain H5404_12775 PF12697 Alpha/beta hydrolase family H5404_12780 PF00378 Enoyl-CoA hydratase/isomerase H5404_12785 PF13378 Enolase C-terminal domain-like H5404_12790 PF13193 AMP-binding enzyme C-terminal domain H5404_12790 PF00501 AMP-binding enzyme H5404_12800 PF03601 Conserved hypothetical protein 698 H5404_12805 PF07690 Major Facilitator Superfamily H5404_12850 PF13533 Biotin-lipoyl like H5404_12855 PF00873 AcrB/AcrD/AcrF family H5404_12875 PF00291 Pyridoxal-phosphate dependent enzyme H5404_12880 PF13404 AsnC-type helix-turn-helix domain H5404_12880 PF01037 Lrp/AsnC ligand binding domain H5404_12895 PF09619 Type III secretion system lipoprotein chaperone (YscW) H5404_12900 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain H5404_12910 PF17152 Periplasmic sensor domain H5404_12910 PF00990 Diguanylate cyclase, GGDEF domain H5404_12920 PF00588 SpoU rRNA Methylase family H5404_12920 PF08032 RNA 2'-O ribose methyltransferase substrate binding H5404_12925 PF11953 Domain of unknown function (DUF3470) H5404_12925 PF00037 4Fe-4S binding domain H5404_12935 PF00571 CBS domain H5404_12935 PF00478 IMP dehydrogenase / GMP reductase domain H5404_12940 PF00403 Heavy-metal-associated domain H5404_12945 PF01048 Phosphorylase superfamily H5404_12955 PF00672 HAMP domain H5404_12955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_12960 PF01230 HIT domain H5404_12975 PF08139 Prokaryotic membrane lipoprotein lipid attachment site H5404_12975 PF13036 Peptidoglycan-synthase activator LpoB H5404_12985 PF05728 Uncharacterised protein family (UPF0227) H5404_12990 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5404_13005 PF03461 TRCF domain H5404_13005 PF00270 DEAD/DEAH box helicase H5404_13005 PF02559 CarD-like/TRCF domain H5404_13005 PF17757 UvrB interaction domain H5404_13005 PF00271 Helicase conserved C-terminal domain H5404_13015 PF12704 MacB-like periplasmic core domain H5404_13015 PF02687 FtsX-like permease family H5404_13020 PF00005 ABC transporter H5404_13025 PF02687 FtsX-like permease family H5404_13025 PF12704 MacB-like periplasmic core domain H5404_13035 PF13567 Domain of unknown function (DUF4131) H5404_13035 PF00753 Metallo-beta-lactamase superfamily H5404_13035 PF03772 Competence protein H5404_13040 PF00005 ABC transporter H5404_13040 PF00664 ABC transporter transmembrane region H5404_13045 PF02606 Tetraacyldisaccharide-1-P 4'-kinase H5404_13050 PF03966 Trm112p-like protein H5404_13055 PF02348 Cytidylyltransferase H5404_13060 PF04293 SpoVR like protein H5404_13065 PF04285 Protein of unknown function (DUF444) H5404_13070 PF08298 PrkA AAA domain H5404_13070 PF06798 PrkA serine protein kinase C-terminal domain H5404_13075 PF03887 YfbU domain H5404_13085 PF04055 Radical SAM superfamily H5404_13095 PF01228 Glycine radical H5404_13095 PF02901 Pyruvate formate lyase-like H5404_13110 PF00005 ABC transporter H5404_13115 PF00497 Bacterial extracellular solute-binding proteins, family 3 H5404_13120 PF00528 Binding-protein-dependent transport system inner membrane component H5404_13125 PF00528 Binding-protein-dependent transport system inner membrane component H5404_13135 PF03372 Endonuclease/Exonuclease/phosphatase family H5404_13140 PF10689 Protein of unknown function (DUF2496) H5404_13145 PF07445 Primosomal replication protein priC H5404_13150 PF01925 Sulfite exporter TauE/SafE H5404_13155 PF13307 Helicase C-terminal domain H5404_13155 PF06733 DEAD_2 H5404_13165 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) H5404_13170 PF00849 RNA pseudouridylate synthase H5404_13175 PF03971 Monomeric isocitrate dehydrogenase H5404_13180 PF00313 'Cold-shock' DNA-binding domain H5404_13185 PF02617 ATP-dependent Clp protease adaptor protein ClpS H5404_13190 PF17871 AAA lid domain H5404_13190 PF10431 C-terminal, D2-small domain, of ClpB protein H5404_13190 PF00004 ATPase family associated with various cellular activities (AAA) H5404_13190 PF07724 AAA domain (Cdc48 subfamily) H5404_13190 PF02861 Clp amino terminal domain, pathogenicity island component H5404_13200 PF01176 Translation initiation factor 1A / IF-1 H5404_13205 PF04377 Arginine-tRNA-protein transferase, C terminus H5404_13205 PF04376 Arginine-tRNA-protein transferase, N terminus H5404_13210 PF03588 Leucyl/phenylalanyl-tRNA protein transferase H5404_13220 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) H5404_13225 PF10692 Protein of unknown function (DUF2498) H5404_13230 PF01131 DNA topoisomerase H5404_13230 PF08272 Topoisomerase I zinc-ribbon-like H5404_13230 PF01396 Topoisomerase DNA binding C4 zinc finger H5404_13230 PF01751 Toprim domain H5404_13235 PF00483 Nucleotidyl transferase H5404_13240 PF00534 Glycosyl transferases group 1 H5404_13240 PF08323 Starch synthase catalytic domain H5404_13260 PF04993 TfoX N-terminal domain H5404_13260 PF04994 TfoX C-terminal domain H5404_13265 PF00356 Bacterial regulatory proteins, lacI family H5404_13270 PF02613 Nitrate reductase delta subunit H5404_13275 PF00072 Response regulator receiver domain H5404_13275 PF00486 Transcriptional regulatory protein, C terminal H5404_13280 PF02698 DUF218 domain H5404_13285 PF13847 Methyltransferase domain H5404_13290 PF17192 MukF middle domain H5404_13290 PF17193 MukF C-terminal domain H5404_13290 PF03882 MukF winged-helix domain H5404_13295 PF04288 MukE-like family H5404_13300 PF04310 MukB N-terminal H5404_13300 PF16330 MukB hinge domain H5404_13310 PF18030 RimK PreATP-grasp domain H5404_13310 PF08443 RimK-like ATP-grasp domain H5404_13320 PF18030 RimK PreATP-grasp domain H5404_13320 PF08443 RimK-like ATP-grasp domain H5404_13325 PF08003 Protein of unknown function (DUF1698) H5404_13330 PF13649 Methyltransferase domain H5404_13335 PF01904 Protein of unknown function DUF72 H5404_13340 PF01336 OB-fold nucleic acid binding domain H5404_13340 PF00152 tRNA synthetases class II (D, K and N) H5404_13340 PF02938 GAD domain H5404_13345 PF02075 Crossover junction endodeoxyribonuclease RuvC H5404_13350 PF02203 Tar ligand binding domain homologue H5404_13350 PF00672 HAMP domain H5404_13350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_13355 PF01330 RuvA N terminal domain H5404_13355 PF07499 RuvA, C-terminal domain H5404_13360 PF05496 Holliday junction DNA helicase RuvB P-loop domain H5404_13360 PF05491 RuvB C-terminal winged helix domain H5404_13360 PF17864 RuvB AAA lid domain H5404_13365 PF01654 Cytochrome bd terminal oxidase subunit I H5404_13370 PF02322 Cytochrome bd terminal oxidase subunit II H5404_13375 PF08173 Membrane bound YbgT-like protein H5404_13385 PF03061 Thioesterase superfamily H5404_13390 PF01618 MotA/TolQ/ExbB proton channel family H5404_13395 PF02472 Biopolymer transport protein ExbD/TolR H5404_13405 PF07676 WD40-like Beta Propeller Repeat H5404_13405 PF04052 TolB amino-terminal domain H5404_13410 PF00691 OmpA family H5404_13415 PF13174 Tetratricopeptide repeat H5404_13415 PF16331 TolA binding protein trimerisation H5404_13420 PF02445 Quinolinate synthetase A protein H5404_13430 PF03994 Domain of Unknown Function (DUF350) H5404_13440 PF03738 Glutathionylspermidine synthase preATP-grasp H5404_13450 PF00072 Response regulator receiver domain H5404_13450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_13450 PF09308 LuxQ, periplasmic H5404_13450 PF00512 His Kinase A (phospho-acceptor) domain H5404_13455 PF06610 L-alanine exporter H5404_13465 PF00589 Phage integrase family H5404_13465 PF13356 Arm DNA-binding domain H5404_13500 PF00075 RNase H H5404_13515 PF04002 RadC-like JAB domain H5404_13545 PF01420 Type I restriction modification DNA specificity domain H5404_13560 PF11867 Domain of unknown function (DUF3387) H5404_13560 PF18766 SWI2/SNF2 ATPase H5404_13560 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) H5404_13580 PF12419 SNF2 Helicase protein H5404_13580 PF00271 Helicase conserved C-terminal domain H5404_13580 PF00176 SNF2 family N-terminal domain H5404_13585 PF12729 Four helix bundle sensory module for signal transduction H5404_13585 PF00672 HAMP domain H5404_13585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_13590 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H5404_13590 PF00529 HlyD membrane-fusion protein of T1SS H5404_13595 PF00873 AcrB/AcrD/AcrF family H5404_13610 PF00579 tRNA synthetases class I (W and Y) H5404_13620 PF03372 Endonuclease/Exonuclease/phosphatase family H5404_13625 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) H5404_13635 PF03466 LysR substrate binding domain H5404_13635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_13645 PF01262 Alanine dehydrogenase/PNT, C-terminal domain H5404_13645 PF05222 Alanine dehydrogenase/PNT, N-terminal domain H5404_13650 PF01037 Lrp/AsnC ligand binding domain H5404_13655 PF13491 4TM region of DNA translocase FtsK/SpoIIIE H5404_13655 PF17854 FtsK alpha domain H5404_13655 PF09397 Ftsk gamma domain H5404_13655 PF01580 FtsK/SpoIIIE family H5404_13660 PF03548 Outer membrane lipoprotein carrier protein LolA H5404_13665 PF16193 AAA C-terminal domain H5404_13665 PF00004 ATPase family associated with various cellular activities (AAA) H5404_13665 PF12002 MgsA AAA+ ATPase C terminal H5404_13670 PF02403 Seryl-tRNA synthetase N-terminal domain H5404_13670 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) H5404_13685 PF01258 Prokaryotic dksA/traR C4-type zinc finger H5404_13690 PF00202 Aminotransferase class-III H5404_13695 PF04055 Radical SAM superfamily H5404_13695 PF06968 Biotin and Thiamin Synthesis associated domain H5404_13700 PF00155 Aminotransferase class I and II H5404_13705 PF08241 Methyltransferase domain H5404_13720 PF01435 Peptidase family M48 H5404_13730 PF00106 short chain dehydrogenase H5404_13765 PF08328 Adenylosuccinate lyase C-terminal H5404_13765 PF00206 Lyase H5404_13770 PF04356 Protein of unknown function (DUF489) H5404_13785 PF00294 pfkB family carbohydrate kinase H5404_13790 PF00816 H-NS histone family H5404_13795 PF03553 Na+/H+ antiporter family H5404_13805 PF00072 Response regulator receiver domain H5404_13805 PF02954 Bacterial regulatory protein, Fis family H5404_13805 PF00158 Sigma-54 interaction domain H5404_13810 PF01634 ATP phosphoribosyltransferase H5404_13810 PF08029 HisG, C-terminal domain H5404_13815 PF00815 Histidinol dehydrogenase H5404_13820 PF00155 Aminotransferase class I and II H5404_13825 PF00475 Imidazoleglycerol-phosphate dehydratase H5404_13825 PF08645 Polynucleotide kinase 3 phosphatase H5404_13830 PF00117 Glutamine amidotransferase class-I H5404_13835 PF00977 Histidine biosynthesis protein H5404_13840 PF00977 Histidine biosynthesis protein H5404_13845 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase H5404_13845 PF01502 Phosphoribosyl-AMP cyclohydrolase H5404_13850 PF02810 SEC-C motif H5404_13855 PF00563 EAL domain H5404_13855 PF08668 HDOD domain H5404_13860 PF00149 Calcineurin-like phosphoesterase H5404_13865 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD H5404_13870 PF01406 tRNA synthetases class I (C) catalytic domain H5404_13870 PF09190 DALR domain H5404_13875 PF00265 Thymidine kinase H5404_13880 PF02698 DUF218 domain H5404_13905 PF01226 Formate/nitrite transporter H5404_13915 PF03649 Uncharacterised protein family (UPF0014) H5404_13920 PF06796 Periplasmic nitrate reductase protein NapE H5404_13925 PF03264 NapC/NirT cytochrome c family, N-terminal region H5404_13930 PF00384 Molybdopterin oxidoreductase H5404_13930 PF18364 Molybdopterin oxidoreductase N-terminal domain H5404_13930 PF01568 Molydopterin dinucleotide binding domain H5404_13935 PF16874 Glycosyl hydrolase family 36 C-terminal domain H5404_13935 PF16875 Glycosyl hydrolase family 36 N-terminal domain H5404_13945 PF02833 DHHA2 domain H5404_13945 PF01368 DHH family H5404_13955 PF00005 ABC transporter H5404_13960 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H5404_13960 PF00005 ABC transporter H5404_13965 PF12911 N-terminal TM domain of oligopeptide transport permease C H5404_13965 PF00528 Binding-protein-dependent transport system inner membrane component H5404_13970 PF00528 Binding-protein-dependent transport system inner membrane component H5404_13975 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle H5404_13980 PF00158 Sigma-54 interaction domain H5404_13980 PF02954 Bacterial regulatory protein, Fis family H5404_13985 PF04012 PspA/IM30 family H5404_13990 PF06667 Phage shock protein B H5404_13995 PF04024 PspC domain H5404_14000 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H5404_14005 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H5404_14010 PF00873 AcrB/AcrD/AcrF family H5404_14015 PF03352 Methyladenine glycosylase H5404_14020 PF03280 Proteobacterial lipase chaperone protein H5404_14025 PF00561 alpha/beta hydrolase fold H5404_14030 PF01053 Cys/Met metabolism PLP-dependent enzyme H5404_14035 PF13396 Phospholipase_D-nuclease N-terminal H5404_14035 PF13091 PLD-like domain H5404_14040 PF00209 Sodium:neurotransmitter symporter family H5404_14045 PF12729 Four helix bundle sensory module for signal transduction H5404_14045 PF00672 HAMP domain H5404_14045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_14050 PF00849 RNA pseudouridylate synthase H5404_14060 PF00111 2Fe-2S iron-sulfur cluster binding domain H5404_14060 PF00970 Oxidoreductase FAD-binding domain H5404_14060 PF00175 Oxidoreductase NAD-binding domain H5404_14065 PF03063 Prismane/CO dehydrogenase family H5404_14070 PF00158 Sigma-54 interaction domain H5404_14070 PF01590 GAF domain H5404_14080 PF01066 CDP-alcohol phosphatidyltransferase H5404_14085 PF00005 ABC transporter H5404_14090 PF00528 Binding-protein-dependent transport system inner membrane component H5404_14095 PF13416 Bacterial extracellular solute-binding protein H5404_14100 PF09335 SNARE associated Golgi protein H5404_14110 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5404_14110 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster H5404_14120 PF00512 His Kinase A (phospho-acceptor) domain H5404_14120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_14125 PF00196 Bacterial regulatory proteins, luxR family H5404_14125 PF00072 Response regulator receiver domain H5404_14135 PF06945 Protein of unknown function (DUF1289) H5404_14145 PF02872 5'-nucleotidase, C-terminal domain H5404_14145 PF00149 Calcineurin-like phosphoesterase H5404_14160 PF01386 Ribosomal L25p family H5404_14165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_14170 PF00072 Response regulator receiver domain H5404_14170 PF00486 Transcriptional regulatory protein, C terminal H5404_14180 PF04851 Type III restriction enzyme, res subunit H5404_14180 PF00271 Helicase conserved C-terminal domain H5404_14185 PF01479 S4 domain H5404_14185 PF00849 RNA pseudouridylate synthase H5404_14190 PF07690 Major Facilitator Superfamily H5404_14205 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) H5404_14220 PF03264 NapC/NirT cytochrome c family, N-terminal region H5404_14225 PF13460 NAD(P)H-binding H5404_14225 PF11066 Protein of unknown function (DUF2867) H5404_14230 PF01554 MatE H5404_14235 PF00005 ABC transporter H5404_14250 PF06965 Na+/H+ antiporter 1 H5404_14255 PF16295 Tetracyclin repressor-like, C-terminal domain H5404_14255 PF00440 Bacterial regulatory proteins, tetR family H5404_14260 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H5404_14260 PF09317 Domain of unknown function (DUF1974) H5404_14260 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H5404_14260 PF02770 Acyl-CoA dehydrogenase, middle domain H5404_14265 PF07055 Enoyl reductase FAD binding domain H5404_14265 PF12241 Trans-2-enoyl-CoA reductase catalytic region H5404_14265 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase H5404_14270 PF06826 Predicted Permease Membrane Region H5404_14270 PF02080 TrkA-C domain H5404_14275 PF00462 Glutaredoxin H5404_14280 PF00465 Iron-containing alcohol dehydrogenase H5404_14285 PF01418 Helix-turn-helix domain, rpiR family H5404_14285 PF01380 SIS domain H5404_14290 PF00282 Pyridoxal-dependent decarboxylase conserved domain H5404_14300 PF03956 Lysine exporter LysO H5404_14310 PF04994 TfoX C-terminal domain H5404_14310 PF04993 TfoX N-terminal domain H5404_14325 PF00512 His Kinase A (phospho-acceptor) domain H5404_14325 PF00497 Bacterial extracellular solute-binding proteins, family 3 H5404_14325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_14335 PF00266 Aminotransferase class-V H5404_14340 PF00291 Pyridoxal-phosphate dependent enzyme H5404_14345 PF00664 ABC transporter transmembrane region H5404_14345 PF00005 ABC transporter H5404_14350 PF00664 ABC transporter transmembrane region H5404_14350 PF00005 ABC transporter H5404_14355 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5404_14365 PF00266 Aminotransferase class-V H5404_14375 PF00990 Diguanylate cyclase, GGDEF domain H5404_14375 PF00072 Response regulator receiver domain H5404_14380 PF00939 Sodium:sulfate symporter transmembrane region H5404_14385 PF02698 DUF218 domain H5404_14390 PF03949 Malic enzyme, NAD binding domain H5404_14390 PF00390 Malic enzyme, N-terminal domain H5404_14395 PF04408 Helicase associated domain (HA2) H5404_14395 PF00271 Helicase conserved C-terminal domain H5404_14395 PF00270 DEAD/DEAH box helicase H5404_14395 PF08482 ATP-dependent helicase C-terminal H5404_14400 PF02253 Phospholipase A1 H5404_14410 PF09423 PhoD-like phosphatase H5404_14410 PF16655 PhoD-like phosphatase, N-terminal domain H5404_14415 PF01259 SAICAR synthetase H5404_14435 PF00691 OmpA family H5404_14435 PF05736 OprF membrane domain H5404_14450 PF02913 FAD linked oxidases, C-terminal domain H5404_14450 PF13183 4Fe-4S dicluster domain H5404_14450 PF01565 FAD binding domain H5404_14455 PF04191 Phospholipid methyltransferase H5404_14465 PF00221 Aromatic amino acid lyase H5404_14470 PF17392 Urocanase C-terminal domain H5404_14470 PF17391 Urocanase N-terminal domain H5404_14470 PF01175 Urocanase Rossmann-like domain H5404_14475 PF00491 Arginase family H5404_14480 PF01979 Amidohydrolase family H5404_14485 PF00392 Bacterial regulatory proteins, gntR family H5404_14485 PF07702 UTRA domain H5404_14500 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain H5404_14500 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) H5404_14500 PF03129 Anticodon binding domain H5404_14500 PF02824 TGS domain H5404_14505 PF00707 Translation initiation factor IF-3, C-terminal domain H5404_14505 PF05198 Translation initiation factor IF-3, N-terminal domain H5404_14510 PF01632 Ribosomal protein L35 H5404_14515 PF00453 Ribosomal protein L20 H5404_14520 PF01906 Putative heavy-metal-binding H5404_14550 PF17158 Membrane-associated sensor, integral membrane domain H5404_14550 PF00990 Diguanylate cyclase, GGDEF domain H5404_14555 PF01409 tRNA synthetases class II core domain (F) H5404_14555 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain H5404_14560 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain H5404_14560 PF03147 Ferredoxin-fold anticodon binding domain H5404_14560 PF03484 tRNA synthetase B5 domain H5404_14560 PF03483 B3/4 domain H5404_14560 PF01588 Putative tRNA binding domain H5404_14570 PF00216 Bacterial DNA-binding protein H5404_14580 PF05724 Thiopurine S-methyltransferase (TPMT) H5404_14585 PF02222 ATP-grasp domain H5404_14590 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region H5404_14590 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region H5404_14595 PF04172 LrgB-like family H5404_14600 PF03788 LrgA family H5404_14605 PF08411 Exonuclease C-terminal H5404_14605 PF00929 Exonuclease H5404_14610 PF00375 Sodium:dicarboxylate symporter family H5404_14615 PF13460 NAD(P)H-binding H5404_14620 PF02277 Phosphoribosyltransferase H5404_14625 PF02654 Cobalamin-5-phosphate synthase H5404_14630 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase H5404_14635 PF00300 Histidine phosphatase superfamily (branch 1) H5404_14645 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family H5404_14650 PF01032 FecCD transport family H5404_14655 PF00005 ABC transporter H5404_14675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_14675 PF03466 LysR substrate binding domain H5404_14695 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase H5404_14700 PF16363 GDP-mannose 4,6 dehydratase H5404_14705 PF04991 LicD family H5404_14710 PF01863 Protein of unknown function DUF45 H5404_14715 PF05971 RNA methyltransferase H5404_14735 PF00392 Bacterial regulatory proteins, gntR family H5404_14740 PF00171 Aldehyde dehydrogenase family H5404_14745 PF05544 Proline racemase H5404_14750 PF05430 S-adenosyl-L-methionine-dependent methyltransferase H5404_14750 PF01266 FAD dependent oxidoreductase H5404_14760 PF02423 Ornithine cyclodeaminase/mu-crystallin family H5404_14765 PF00701 Dihydrodipicolinate synthetase family H5404_14770 PF08402 TOBE domain H5404_14770 PF00005 ABC transporter H5404_14775 PF00528 Binding-protein-dependent transport system inner membrane component H5404_14780 PF00528 Binding-protein-dependent transport system inner membrane component H5404_14790 PF08453 Peptidase family M9 N-terminal H5404_14790 PF01752 Collagenase H5404_14800 PF00005 ABC transporter H5404_14800 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H5404_14805 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H5404_14805 PF00005 ABC transporter H5404_14810 PF00528 Binding-protein-dependent transport system inner membrane component H5404_14810 PF12911 N-terminal TM domain of oligopeptide transport permease C H5404_14815 PF00528 Binding-protein-dependent transport system inner membrane component H5404_14820 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle H5404_14825 PF01546 Peptidase family M20/M25/M40 H5404_14825 PF07687 Peptidase dimerisation domain H5404_14830 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H5404_14835 PF04209 homogentisate 1,2-dioxygenase H5404_14845 PF02798 Glutathione S-transferase, N-terminal domain H5404_14845 PF14497 Glutathione S-transferase, C-terminal domain H5404_14890 PF13533 Biotin-lipoyl like H5404_14900 PF02405 Permease MlaE H5404_14905 PF00005 ABC transporter H5404_14920 PF12794 Mechanosensitive ion channel inner membrane domain 1 H5404_14920 PF12795 Mechanosensitive ion channel porin domain H5404_14920 PF00924 Mechanosensitive ion channel H5404_14925 PF07687 Peptidase dimerisation domain H5404_14925 PF01546 Peptidase family M20/M25/M40 H5404_14930 PF08543 Phosphomethylpyrimidine kinase H5404_14935 PF03466 LysR substrate binding domain H5404_14935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_14955 PF00300 Histidine phosphatase superfamily (branch 1) H5404_14970 PF00939 Sodium:sulfate symporter transmembrane region H5404_14975 PF00497 Bacterial extracellular solute-binding proteins, family 3 H5404_14975 PF00512 His Kinase A (phospho-acceptor) domain H5404_14975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_14980 PF00158 Sigma-54 interaction domain H5404_14980 PF00072 Response regulator receiver domain H5404_14980 PF02954 Bacterial regulatory protein, Fis family H5404_14985 PF00990 Diguanylate cyclase, GGDEF domain H5404_14985 PF03707 Bacterial signalling protein N terminal repeat H5404_14985 PF00563 EAL domain H5404_14990 PF11871 Domain of unknown function (DUF3391) H5404_14990 PF01966 HD domain H5404_14995 PF01810 LysE type translocator H5404_15000 PF11230 Protein of unknown function (DUF3029) H5404_15005 PF04055 Radical SAM superfamily H5404_15015 PF03741 Integral membrane protein TerC family H5404_15020 PF01551 Peptidase family M23 H5404_15020 PF01476 LysM domain H5404_15020 PF08525 Opacity-associated protein A N-terminal motif H5404_15050 PF02954 Bacterial regulatory protein, Fis family H5404_15050 PF00072 Response regulator receiver domain H5404_15050 PF00158 Sigma-54 interaction domain H5404_15055 PF10431 C-terminal, D2-small domain, of ClpB protein H5404_15055 PF00004 ATPase family associated with various cellular activities (AAA) H5404_15055 PF17871 AAA lid domain H5404_15055 PF07724 AAA domain (Cdc48 subfamily) H5404_15060 PF05638 Type VI secretion system effector, Hcp H5404_15065 PF04717 Type VI secretion system, phage-baseplate injector H5404_15090 PF00069 Protein kinase domain H5404_15105 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath H5404_15115 PF05947 Type VI secretion system, TssF H5404_15125 PF01037 Lrp/AsnC ligand binding domain H5404_15155 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE H5404_15235 PF01966 HD domain H5404_15240 PF00465 Iron-containing alcohol dehydrogenase H5404_15245 PF03222 Tryptophan/tyrosine permease family H5404_15265 PF00005 ABC transporter H5404_15265 PF00664 ABC transporter transmembrane region H5404_15270 PF00664 ABC transporter transmembrane region H5404_15270 PF00005 ABC transporter H5404_15295 PF00012 Hsp70 protein H5404_15300 PF00012 Hsp70 protein H5404_15310 PF17158 Membrane-associated sensor, integral membrane domain H5404_15310 PF00990 Diguanylate cyclase, GGDEF domain H5404_15340 PF04879 Molybdopterin oxidoreductase Fe4S4 domain H5404_15340 PF01568 Molydopterin dinucleotide binding domain H5404_15340 PF00384 Molybdopterin oxidoreductase H5404_15345 PF12800 4Fe-4S binding domain H5404_15345 PF13247 4Fe-4S dicluster domain H5404_15350 PF04976 DMSO reductase anchor subunit (DmsC) H5404_15355 PF02613 Nitrate reductase delta subunit H5404_15365 PF02525 Flavodoxin-like fold H5404_15370 PF00271 Helicase conserved C-terminal domain H5404_15370 PF04408 Helicase associated domain (HA2) H5404_15370 PF11898 Domain of unknown function (DUF3418) H5404_15370 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold H5404_15370 PF00270 DEAD/DEAH box helicase H5404_15385 PF02028 BCCT, betaine/carnitine/choline family transporter H5404_15395 PF02397 Bacterial sugar transferase H5404_15400 PF00535 Glycosyl transferase family 2 H5404_15405 PF00534 Glycosyl transferases group 1 H5404_15405 PF13439 Glycosyltransferase Family 4 H5404_15435 PF00534 Glycosyl transferases group 1 H5404_15435 PF13439 Glycosyltransferase Family 4 H5404_15440 PF00534 Glycosyl transferases group 1 H5404_15440 PF13439 Glycosyltransferase Family 4 H5404_15445 PF02954 Bacterial regulatory protein, Fis family H5404_15445 PF00158 Sigma-54 interaction domain H5404_15445 PF00072 Response regulator receiver domain H5404_15460 PF02563 Polysaccharide biosynthesis/export protein H5404_15460 PF10531 SLBB domain H5404_15470 PF01740 STAS domain H5404_15475 PF14743 DNA ligase OB-like domain H5404_15475 PF01068 ATP dependent DNA ligase domain H5404_15485 PF01554 MatE H5404_15490 PF00677 Lumazine binding domain H5404_15500 PF03881 Fructosamine kinase H5404_15505 PF00072 Response regulator receiver domain H5404_15505 PF01339 CheB methylesterase H5404_15510 PF05230 MASE2 domain H5404_15510 PF00990 Diguanylate cyclase, GGDEF domain H5404_15520 PF00877 NlpC/P60 family H5404_15525 PF00672 HAMP domain H5404_15525 PF17202 Single cache domain 3 H5404_15525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_15560 PF03942 DTW domain H5404_15565 PF00480 ROK family H5404_15575 PF00994 Probable molybdopterin binding domain H5404_15575 PF03454 MoeA C-terminal region (domain IV) H5404_15575 PF03453 MoeA N-terminal region (domain I and II) H5404_15580 PF12804 MobA-like NTP transferase domain H5404_15585 PF08402 TOBE domain H5404_15585 PF00005 ABC transporter H5404_15590 PF00528 Binding-protein-dependent transport system inner membrane component H5404_15595 PF12849 PBP superfamily domain H5404_15600 PF00158 Sigma-54 interaction domain H5404_15600 PF00072 Response regulator receiver domain H5404_15600 PF02954 Bacterial regulatory protein, Fis family H5404_15605 PF00512 His Kinase A (phospho-acceptor) domain H5404_15605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_15610 PF12848 ABC transporter H5404_15610 PF00005 ABC transporter H5404_15615 PF02634 FdhD/NarQ family H5404_15635 PF02613 Nitrate reductase delta subunit H5404_15645 PF00384 Molybdopterin oxidoreductase H5404_15645 PF04879 Molybdopterin oxidoreductase Fe4S4 domain H5404_15645 PF01568 Molydopterin dinucleotide binding domain H5404_15650 PF13247 4Fe-4S dicluster domain H5404_15665 PF05593 RHS Repeat H5404_15665 PF03527 RHS protein H5404_15675 PF00909 Ammonium Transporter Family H5404_15685 PF02146 Sir2 family H5404_15690 PF13416 Bacterial extracellular solute-binding protein H5404_15695 PF13416 Bacterial extracellular solute-binding protein H5404_15700 PF00528 Binding-protein-dependent transport system inner membrane component H5404_15705 PF00528 Binding-protein-dependent transport system inner membrane component H5404_15710 PF08402 TOBE domain H5404_15710 PF00005 ABC transporter H5404_15730 PF01171 PP-loop family H5404_15735 PF00582 Universal stress protein family H5404_15740 PF13545 Crp-like helix-turn-helix domain H5404_15740 PF00027 Cyclic nucleotide-binding domain H5404_15755 PF00403 Heavy-metal-associated domain H5404_15765 PF13442 Cytochrome C oxidase, cbb3-type, subunit III H5404_15765 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP H5404_15780 PF00115 Cytochrome C and Quinol oxidase polypeptide I H5404_15795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_15795 PF00512 His Kinase A (phospho-acceptor) domain H5404_15795 PF00072 Response regulator receiver domain H5404_15795 PF09308 LuxQ, periplasmic H5404_15815 PF17414 MatP C-terminal ribbon-helix-helix domain H5404_15815 PF06303 MatP N-terminal domain H5404_15820 PF13654 AAA domain H5404_15820 PF05362 Lon protease (S16) C-terminal proteolytic domain H5404_15825 PF07977 FabA-like domain H5404_15830 PF04957 Ribosome modulation factor H5404_15840 PF12848 ABC transporter H5404_15840 PF16326 ABC transporter C-terminal domain H5404_15840 PF00005 ABC transporter H5404_15850 PF01170 Putative RNA methylase family UPF0020 H5404_15850 PF02926 THUMP domain H5404_15850 PF10672 S-adenosylmethionine-dependent methyltransferase H5404_15855 PF07126 Cell-division protein ZapC H5404_15860 PF01180 Dihydroorotate dehydrogenase H5404_15865 PF05088 Bacterial NAD-glutamate dehydrogenase H5404_15875 PF17432 Domain of unknown function (DUF3458_C) ARM repeats H5404_15875 PF01433 Peptidase family M1 domain H5404_15875 PF11940 Domain of unknown function (DUF3458) Ig-like fold H5404_15885 PF11818 C-terminal domain of tail specific protease (DUF3340) H5404_15885 PF03572 Peptidase family S41 H5404_15885 PF17804 Tail specific protease N-terminal domain H5404_15885 PF00595 PDZ domain H5404_15890 PF17516 ProQ C-terminal domain H5404_15890 PF04352 ProQ/FINO family H5404_15895 PF13185 GAF domain H5404_15900 PF00664 ABC transporter transmembrane region H5404_15900 PF00005 ABC transporter H5404_15905 PF04403 Paraquat-inducible protein A H5404_15910 PF02470 MlaD protein H5404_15915 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF H5404_15915 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF H5404_15915 PF01189 16S rRNA methyltransferase RsmB/F H5404_15935 PF00793 DAHP synthetase I family H5404_15940 PF04461 Protein of unknown function (DUF520) H5404_15945 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases H5404_15945 PF10414 Sirohaem synthase dimerisation region H5404_15945 PF14824 Sirohaem biosynthesis protein central H5404_15950 PF00497 Bacterial extracellular solute-binding proteins, family 3 H5404_15955 PF00528 Binding-protein-dependent transport system inner membrane component H5404_15960 PF00528 Binding-protein-dependent transport system inner membrane component H5404_15965 PF00005 ABC transporter H5404_15970 PF01027 Inhibitor of apoptosis-promoting Bax1 H5404_15980 PF04358 DsrC like protein H5404_15985 PF00708 Acylphosphatase H5404_15990 PF00672 HAMP domain H5404_15990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_15990 PF02743 Cache domain H5404_15995 PF10672 S-adenosylmethionine-dependent methyltransferase H5404_15995 PF17785 PUA-like domain H5404_16010 PF05736 OprF membrane domain H5404_16010 PF00691 OmpA family H5404_16025 PF05736 OprF membrane domain H5404_16025 PF00691 OmpA family H5404_16035 PF00990 Diguanylate cyclase, GGDEF domain H5404_16035 PF17158 Membrane-associated sensor, integral membrane domain H5404_16040 PF06508 Queuosine biosynthesis protein QueC H5404_16045 PF04055 Radical SAM superfamily H5404_16060 PF00089 Trypsin H5404_16065 PF00583 Acetyltransferase (GNAT) family H5404_16070 PF00501 AMP-binding enzyme H5404_16070 PF13193 AMP-binding enzyme C-terminal domain H5404_16070 PF16177 Acetyl-coenzyme A synthetase N-terminus H5404_16075 PF04303 PrpF protein H5404_16080 PF00694 Aconitase C-terminal domain H5404_16080 PF00330 Aconitase family (aconitate hydratase) H5404_16085 PF00285 Citrate synthase, C-terminal domain H5404_16115 PF01970 Tripartite tricarboxylate transporter TctA family H5404_16120 PF01925 Sulfite exporter TauE/SafE H5404_16130 PF05844 YopD protein H5404_16140 PF07720 Tetratricopeptide repeat H5404_16145 PF04792 V antigen (LcrV) protein H5404_16150 PF07216 LcrG protein H5404_16155 PF09621 Type III secretion system regulator (LcrR) H5404_16160 PF00771 FHIPEP family H5404_16180 PF09059 TyeA H5404_16185 PF07201 HrpJ-like domain H5404_16190 PF18269 T3SS EscN ATPase C-terminal domain H5404_16190 PF02874 ATP synthase alpha/beta family, beta-barrel domain H5404_16190 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain H5404_16205 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term H5404_16210 PF00813 FliP family H5404_16215 PF01313 Bacterial export proteins, family 3 H5404_16220 PF01311 Bacterial export proteins, family 1 H5404_16225 PF01312 FlhB HrpN YscU SpaS Family H5404_16230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_16230 PF03466 LysR substrate binding domain H5404_16235 PF12146 Serine aminopeptidase, S33 H5404_16240 PF12146 Serine aminopeptidase, S33 H5404_16270 PF02661 Fic/DOC family H5404_16280 PF02108 Flagellar assembly protein FliH H5404_16290 PF01514 Secretory protein of YscJ/FliF family H5404_16295 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI H5404_16305 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) H5404_16310 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF H5404_16320 PF16693 Inner membrane component of T3SS, periplasmic domain H5404_16320 PF16697 Inner membrane component of T3SS, cytoplasmic domain H5404_16325 PF00263 Bacterial type II and III secretion system protein H5404_16325 PF03958 Bacterial type II/III secretion system short domain H5404_16340 PF12833 Helix-turn-helix domain H5404_16360 PF00171 Aldehyde dehydrogenase family H5404_16365 PF01590 GAF domain H5404_16365 PF02954 Bacterial regulatory protein, Fis family H5404_16365 PF00158 Sigma-54 interaction domain H5404_16380 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase H5404_16380 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain H5404_16385 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase H5404_16390 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain H5404_16390 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain H5404_16395 PF12431 Transcriptional regulator H5404_16395 PF00072 Response regulator receiver domain H5404_16400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_16400 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain H5404_16400 PF17203 Single cache domain 3 H5404_16400 PF00989 PAS fold H5404_16415 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H5404_16430 PF03150 Di-haem cytochrome c peroxidase H5404_16430 PF00034 Cytochrome c H5404_16435 PF13840 ACT domain H5404_16435 PF00696 Amino acid kinase family H5404_16440 PF06339 Ectoine synthase H5404_16445 PF00202 Aminotransferase class-III H5404_16450 PF00583 Acetyltransferase (GNAT) family H5404_16455 PF02028 BCCT, betaine/carnitine/choline family transporter H5404_16470 PF00571 CBS domain H5404_16470 PF00005 ABC transporter H5404_16475 PF00528 Binding-protein-dependent transport system inner membrane component H5404_16480 PF04069 Substrate binding domain of ABC-type glycine betaine transport system H5404_16490 PF00501 AMP-binding enzyme H5404_16510 PF00072 Response regulator receiver domain H5404_16510 PF00486 Transcriptional regulatory protein, C terminal H5404_16515 PF00512 His Kinase A (phospho-acceptor) domain H5404_16515 PF08521 Two-component sensor kinase N-terminal H5404_16515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_16520 PF00884 Sulfatase H5404_16545 PF01235 Sodium:alanine symporter family H5404_16555 PF01810 LysE type translocator H5404_16560 PF02074 Carboxypeptidase Taq (M32) metallopeptidase H5404_16565 PF13657 HipA N-terminal domain H5404_16565 PF07804 HipA-like C-terminal domain H5404_16570 PF02463 RecF/RecN/SMC N terminal domain H5404_16580 PF00872 Transposase, Mutator family H5404_16615 PF08544 GHMP kinases C terminal H5404_16615 PF00288 GHMP kinases N terminal domain H5404_16615 PF10509 Galactokinase galactose-binding signature H5404_16620 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain H5404_16620 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain H5404_16625 PF16363 GDP-mannose 4,6 dehydratase H5404_16630 PF12729 Four helix bundle sensory module for signal transduction H5404_16630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_16630 PF00672 HAMP domain H5404_16635 PF02264 LamB porin H5404_16640 PF02449 Beta-galactosidase H5404_16640 PF08533 Beta-galactosidase C-terminal domain H5404_16640 PF08532 Beta-galactosidase trimerisation domain H5404_16645 PF07745 Glycosyl hydrolase family 53 H5404_16650 PF00528 Binding-protein-dependent transport system inner membrane component H5404_16655 PF00528 Binding-protein-dependent transport system inner membrane component H5404_16660 PF13416 Bacterial extracellular solute-binding protein H5404_16665 PF17912 MalK OB fold domain H5404_16665 PF00005 ABC transporter H5404_16670 PF00356 Bacterial regulatory proteins, lacI family H5404_16675 PF07745 Glycosyl hydrolase family 53 H5404_16685 PF00872 Transposase, Mutator family H5404_16730 PF00872 Transposase, Mutator family H5404_16750 PF00239 Resolvase, N terminal domain H5404_16750 PF07508 Recombinase H5404_16750 PF13408 Recombinase zinc beta ribbon domain H5404_16765 PF13286 Phosphohydrolase-associated domain H5404_16765 PF01966 HD domain H5404_16780 PF03279 Bacterial lipid A biosynthesis acyltransferase H5404_16785 PF13520 Amino acid permease H5404_16795 PF04204 Homoserine O-succinyltransferase H5404_16810 PF03707 Bacterial signalling protein N terminal repeat H5404_16810 PF00990 Diguanylate cyclase, GGDEF domain H5404_16810 PF00563 EAL domain H5404_16815 PF00072 Response regulator receiver domain H5404_16815 PF01627 Hpt domain H5404_16815 PF00512 His Kinase A (phospho-acceptor) domain H5404_16815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_16815 PF00672 HAMP domain H5404_16815 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) H5404_16830 PF00132 Bacterial transferase hexapeptide (six repeats) H5404_16830 PF12464 Maltose acetyltransferase H5404_16840 PF01928 CYTH domain H5404_16850 PF04237 YjbR H5404_16855 PF01047 MarR family H5404_16865 PF12833 Helix-turn-helix domain H5404_16870 PF01411 tRNA synthetases class II (A) H5404_16870 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain H5404_16870 PF02272 DHHA1 domain H5404_16880 PF00563 EAL domain H5404_16880 PF00196 Bacterial regulatory proteins, luxR family H5404_16885 PF01368 DHH family H5404_16885 PF02833 DHHA2 domain H5404_16890 PF00202 Aminotransferase class-III H5404_16895 PF00171 Aldehyde dehydrogenase family H5404_16900 PF04371 Porphyromonas-type peptidyl-arginine deiminase H5404_16905 PF00795 Carbon-nitrogen hydrolase H5404_16910 PF01266 FAD dependent oxidoreductase H5404_16915 PF00171 Aldehyde dehydrogenase family H5404_16920 PF07883 Cupin domain H5404_16920 PF01381 Helix-turn-helix H5404_16925 PF07722 Peptidase C26 H5404_16930 PF00120 Glutamine synthetase, catalytic domain H5404_16935 PF03553 Na+/H+ antiporter family H5404_16955 PF13302 Acetyltransferase (GNAT) domain H5404_16960 PF01810 LysE type translocator H5404_17010 PF13333 Integrase core domain H5404_17010 PF00665 Integrase core domain H5404_17010 PF13276 HTH-like domain H5404_17060 PF00583 Acetyltransferase (GNAT) family H5404_17125 PF13276 HTH-like domain H5404_17125 PF00665 Integrase core domain H5404_17125 PF13333 Integrase core domain H5404_17160 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H5404_17165 PF13276 HTH-like domain H5404_17165 PF00665 Integrase core domain H5404_17165 PF13333 Integrase core domain H5404_17255 PF01810 LysE type translocator H5404_17435 PF13495 Phage integrase, N-terminal SAM-like domain H5404_17435 PF00589 Phage integrase family H5404_17450 PF13302 Acetyltransferase (GNAT) domain H5404_17455 PF18024 Helix-turn-helix domain H5404_17455 PF00158 Sigma-54 interaction domain H5404_17460 PF05128 Domain of unknown function (DUF697) H5404_17465 PF04317 YcjX-like family, DUF463 H5404_17480 PF00425 chorismate binding enzyme H5404_17480 PF04715 Anthranilate synthase component I, N terminal region H5404_17485 PF09308 LuxQ, periplasmic H5404_17485 PF00072 Response regulator receiver domain H5404_17485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_17485 PF00512 His Kinase A (phospho-acceptor) domain H5404_17495 PF00293 NUDIX domain H5404_17500 PF03222 Tryptophan/tyrosine permease family H5404_17505 PF03315 Serine dehydratase beta chain H5404_17505 PF03313 Serine dehydratase alpha chain H5404_17510 PF00563 EAL domain H5404_17510 PF04940 Sensors of blue-light using FAD H5404_17520 PF01242 6-pyruvoyl tetrahydropterin synthase H5404_17525 PF12729 Four helix bundle sensory module for signal transduction H5404_17525 PF00672 HAMP domain H5404_17525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_17530 PF01336 OB-fold nucleic acid binding domain H5404_17530 PF00152 tRNA synthetases class II (D, K and N) H5404_17540 PF00392 Bacterial regulatory proteins, gntR family H5404_17540 PF00155 Aminotransferase class I and II H5404_17555 PF00155 Aminotransferase class I and II H5404_17575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_17575 PF00672 HAMP domain H5404_17580 PF02028 BCCT, betaine/carnitine/choline family transporter H5404_17585 PF01047 MarR family H5404_17590 PF00196 Bacterial regulatory proteins, luxR family H5404_17590 PF00072 Response regulator receiver domain H5404_17595 PF17200 Single Cache domain 2 H5404_17595 PF07730 Histidine kinase H5404_17600 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component H5404_17610 PF03480 Bacterial extracellular solute-binding protein, family 7 H5404_17625 PF00753 Metallo-beta-lactamase superfamily H5404_17630 PF05951 Bacterial protein of unknown function (DUF882) H5404_17635 PF03734 L,D-transpeptidase catalytic domain H5404_17635 PF01471 Putative peptidoglycan binding domain H5404_17660 PF00925 GTP cyclohydrolase II H5404_17670 PF03918 Cytochrome C biogenesis protein H5404_17675 PF08534 Redoxin H5404_17680 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal H5404_17680 PF01578 Cytochrome C assembly protein H5404_17685 PF03916 Polysulphide reductase, NrfD H5404_17690 PF13247 4Fe-4S dicluster domain H5404_17700 PF02335 Cytochrome c552 H5404_17715 PF00521 DNA gyrase/topoisomerase IV, subunit A H5404_17715 PF03989 DNA gyrase C-terminal domain, beta-propeller H5404_17725 PF02867 Ribonucleotide reductase, barrel domain H5404_17725 PF00317 Ribonucleotide reductase, all-alpha domain H5404_17725 PF03477 ATP cone domain H5404_17730 PF00268 Ribonucleotide reductase, small chain H5404_17740 PF00994 Probable molybdopterin binding domain H5404_17755 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain H5404_17760 PF16653 Saccharopine dehydrogenase C-terminal domain H5404_17760 PF03435 Saccharopine dehydrogenase NADP binding domain H5404_17765 PF00202 Aminotransferase class-III H5404_17790 PF01066 CDP-alcohol phosphatidyltransferase H5404_17795 PF08459 UvrC Helix-hairpin-helix N-terminal H5404_17795 PF02151 UvrB/uvrC motif H5404_17795 PF01541 GIY-YIG catalytic domain H5404_17800 PF00196 Bacterial regulatory proteins, luxR family H5404_17800 PF00072 Response regulator receiver domain H5404_17805 PF03104 DNA polymerase family B, exonuclease domain H5404_17805 PF00136 DNA polymerase family B H5404_17815 PF01132 Elongation factor P (EF-P) OB domain H5404_17815 PF08207 Elongation factor P (EF-P) KOW-like domain H5404_17815 PF09285 Elongation factor P, C-terminal H5404_17820 PF04269 Protein of unknown function, DUF440 H5404_17825 PF00849 RNA pseudouridylate synthase H5404_17825 PF01479 S4 domain H5404_17835 PF01300 Telomere recombination H5404_17840 PF02811 PHP domain H5404_17845 PF08056 Tryptophan operon leader peptide H5404_17850 PF00425 chorismate binding enzyme H5404_17850 PF04715 Anthranilate synthase component I, N terminal region H5404_17855 PF00117 Glutamine amidotransferase class-I H5404_17860 PF02885 Glycosyl transferase family, helical bundle domain H5404_17860 PF00591 Glycosyl transferase family, a/b domain H5404_17865 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase H5404_17865 PF00218 Indole-3-glycerol phosphate synthase H5404_17870 PF00291 Pyridoxal-phosphate dependent enzyme H5404_17875 PF00290 Tryptophan synthase alpha chain H5404_17880 PF13545 Crp-like helix-turn-helix domain H5404_17880 PF00027 Cyclic nucleotide-binding domain H5404_17885 PF00501 AMP-binding enzyme H5404_17885 PF13193 AMP-binding enzyme C-terminal domain H5404_17895 PF00375 Sodium:dicarboxylate symporter family H5404_18020 PF00717 Peptidase S24-like H5404_18025 PF11799 impB/mucB/samB family C-terminal domain H5404_18025 PF13438 Domain of unknown function (DUF4113) H5404_18025 PF00817 impB/mucB/samB family H5404_18060 PF07669 Eco57I restriction-modification methylase H5404_18065 PF06616 BsuBI/PstI restriction endonuclease domain H5404_18065 PF17728 BsuBI/PstI restriction endonuclease HTH domain H5404_18230 PF17327 Acyl homoserine lactone synthase H5404_18235 PF00072 Response regulator receiver domain H5404_18235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_18245 PF04279 Intracellular septation protein A H5404_18250 PF03061 Thioesterase superfamily H5404_18255 PF03795 YCII-related domain H5404_18280 PF13401 AAA domain H5404_18280 PF09077 Mu B transposition protein, C terminal H5404_18330 PF02810 SEC-C motif H5404_18505 PF01555 DNA methylase H5404_18530 PF08267 Cobalamin-independent synthase, N-terminal domain H5404_18530 PF01717 Cobalamin-independent synthase, Catalytic domain H5404_18535 PF03466 LysR substrate binding domain H5404_18535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_18550 PF00563 EAL domain H5404_18550 PF00360 Phytochrome region H5404_18550 PF01590 GAF domain H5404_18550 PF00990 Diguanylate cyclase, GGDEF domain H5404_18555 PF04055 Radical SAM superfamily H5404_18555 PF11842 Domain of unknown function (DUF3362) H5404_18555 PF08497 Radical SAM N-terminal H5404_18560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_18560 PF00672 HAMP domain H5404_18565 PF00486 Transcriptional regulatory protein, C terminal H5404_18565 PF00072 Response regulator receiver domain H5404_18570 PF00672 HAMP domain H5404_18570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_18570 PF00512 His Kinase A (phospho-acceptor) domain H5404_18590 PF03466 LysR substrate binding domain H5404_18590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_18595 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H5404_18595 PF00529 HlyD membrane-fusion protein of T1SS H5404_18605 PF01717 Cobalamin-independent synthase, Catalytic domain H5404_18605 PF08267 Cobalamin-independent synthase, N-terminal domain H5404_18615 PF12833 Helix-turn-helix domain H5404_18615 PF02311 AraC-like ligand binding domain H5404_18620 PF00857 Isochorismatase family H5404_18625 PF02687 FtsX-like permease family H5404_18625 PF12704 MacB-like periplasmic core domain H5404_18625 PF00005 ABC transporter H5404_18630 PF02687 FtsX-like permease family H5404_18630 PF12704 MacB-like periplasmic core domain H5404_18630 PF00005 ABC transporter H5404_18635 PF02687 FtsX-like permease family H5404_18635 PF12704 MacB-like periplasmic core domain H5404_18635 PF00005 ABC transporter H5404_18645 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H5404_18660 PF05958 tRNA (Uracil-5-)-methyltransferase H5404_18675 PF00085 Thioredoxin H5404_18680 PF11412 Disulphide bond corrector protein DsbC H5404_18680 PF02683 Cytochrome C biogenesis protein transmembrane region H5404_18690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_18690 PF03466 LysR substrate binding domain H5404_18695 PF00072 Response regulator receiver domain H5404_18695 PF00196 Bacterial regulatory proteins, luxR family H5404_18700 PF00512 His Kinase A (phospho-acceptor) domain H5404_18700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_18705 PF13247 4Fe-4S dicluster domain H5404_18710 PF03916 Polysulphide reductase, NrfD H5404_18715 PF04879 Molybdopterin oxidoreductase Fe4S4 domain H5404_18715 PF00384 Molybdopterin oxidoreductase H5404_18715 PF01568 Molydopterin dinucleotide binding domain H5404_18720 PF00034 Cytochrome c H5404_18725 PF13442 Cytochrome C oxidase, cbb3-type, subunit III H5404_18730 PF04403 Paraquat-inducible protein A H5404_18735 PF02470 MlaD protein H5404_18745 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase H5404_18755 PF00535 Glycosyl transferase family 2 H5404_18760 PF01370 NAD dependent epimerase/dehydratase family H5404_18770 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle H5404_18775 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family H5404_18780 PF18073 Rubredoxin metal binding domain H5404_18785 PF06305 Lipopolysaccharide assembly protein A domain H5404_18790 PF00216 Bacterial DNA-binding protein H5404_18795 PF00575 S1 RNA binding domain H5404_18800 PF02224 Cytidylate kinase H5404_18805 PF01343 Peptidase family S49 H5404_18805 PF08496 Peptidase family S49 N-terminal H5404_18810 PF00106 short chain dehydrogenase H5404_18825 PF02811 PHP domain H5404_18825 PF07733 Bacterial DNA polymerase III alpha NTPase domain H5404_18825 PF17657 Bacterial DNA polymerase III alpha subunit finger domain H5404_18825 PF01336 OB-fold nucleic acid binding domain H5404_18825 PF14579 Helix-hairpin-helix motif H5404_18830 PF00072 Response regulator receiver domain H5404_18830 PF01584 CheW-like domain H5404_18835 PF00480 ROK family H5404_18840 PF00224 Pyruvate kinase, barrel domain H5404_18840 PF02887 Pyruvate kinase, alpha/beta domain H5404_18845 PF01734 Patatin-like phospholipase H5404_18860 PF00209 Sodium:neurotransmitter symporter family H5404_18875 PF02378 Phosphotransferase system, EIIC H5404_18875 PF00367 phosphotransferase system, EIIB H5404_18880 PF01026 TatD related DNase H5404_18885 PF09115 DNA polymerase III, delta subunit, C terminal H5404_18890 PF02223 Thymidylate kinase H5404_18895 PF02618 YceG-like family H5404_18900 PF01063 Amino-transferase class IV H5404_18905 PF02801 Beta-ketoacyl synthase, C-terminal domain H5404_18905 PF00109 Beta-ketoacyl synthase, N-terminal domain H5404_18910 PF00550 Phosphopantetheine attachment site H5404_18920 PF00698 Acyl transferase domain H5404_18925 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal H5404_18925 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III H5404_18930 PF02504 Fatty acid synthesis protein H5404_18935 PF01783 Ribosomal L32p protein family H5404_18940 PF02620 Large ribosomal RNA subunit accumulation protein YceD H5404_18945 PF02545 Maf-like protein H5404_18950 PF00849 RNA pseudouridylate synthase H5404_18950 PF01479 S4 domain H5404_18955 PF10150 Ribonuclease E/G family H5404_18955 PF00575 S1 RNA binding domain H5404_18955 PF12111 Polyribonucleotide phosphorylase C terminal H5404_18960 PF00916 Sulfate permease family H5404_18960 PF01740 STAS domain H5404_18965 PF01451 Low molecular weight phosphotyrosine protein phosphatase H5404_18970 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP H5404_18970 PF12557 Cob(I)alamin adenosyltransferase N terminal H5404_18980 PF00485 Phosphoribulokinase / Uridine kinase family H5404_18985 PF10609 NUBPL iron-transfer P-loop NTPase H5404_18990 PF01588 Putative tRNA binding domain H5404_18990 PF09334 tRNA synthetases class I (M) H5404_19000 PF00392 Bacterial regulatory proteins, gntR family H5404_19000 PF07840 FadR C-terminal domain H5404_19005 PF06450 Bacterial Na+/H+ antiporter B (NhaB) H5404_19010 PF02600 Disulfide bond formation protein DsbB H5404_19015 PF02810 SEC-C motif H5404_19015 PF03695 Uncharacterised protein family (UPF0149) H5404_19020 PF01207 Dihydrouridine synthase (Dus) H5404_19025 PF00990 Diguanylate cyclase, GGDEF domain H5404_19025 PF00072 Response regulator receiver domain H5404_19030 PF00128 Alpha amylase, catalytic domain H5404_19030 PF02903 Alpha amylase, N-terminal ig-like domain H5404_19035 PF00005 ABC transporter H5404_19040 PF02653 Branched-chain amino acid transport system / permease component H5404_19050 PF04217 Protein of unknown function, DUF412 H5404_19055 PF00871 Acetokinase family H5404_19060 PF01515 Phosphate acetyl/butaryl transferase H5404_19060 PF07085 DRTGG domain H5404_19065 PF13194 Domain of unknown function (DUF4010) H5404_19075 PF13409 Glutathione S-transferase, N-terminal domain H5404_19080 PF00005 ABC transporter H5404_19080 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H5404_19085 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H5404_19085 PF00005 ABC transporter H5404_19090 PF12911 N-terminal TM domain of oligopeptide transport permease C H5404_19090 PF00528 Binding-protein-dependent transport system inner membrane component H5404_19095 PF00528 Binding-protein-dependent transport system inner membrane component H5404_19100 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle H5404_19105 PF02391 MoaE protein H5404_19110 PF02597 ThiS family H5404_19115 PF01967 MoaC family H5404_19120 PF00994 Probable molybdopterin binding domain H5404_19125 PF06463 Molybdenum Cofactor Synthesis C H5404_19125 PF04055 Radical SAM superfamily H5404_19130 PF01933 Uncharacterised protein family UPF0052 H5404_19135 PF01627 Hpt domain H5404_19140 PF00158 Sigma-54 interaction domain H5404_19140 PF00072 Response regulator receiver domain H5404_19140 PF02954 Bacterial regulatory protein, Fis family H5404_19145 PF17757 UvrB interaction domain H5404_19145 PF12344 Ultra-violet resistance protein B H5404_19145 PF02151 UvrB/uvrC motif H5404_19145 PF04851 Type III restriction enzyme, res subunit H5404_19145 PF00271 Helicase conserved C-terminal domain H5404_19155 PF02508 Rnf-Nqr subunit, membrane protein H5404_19160 PF04060 Putative Fe-S cluster H5404_19165 PF10531 SLBB domain H5404_19165 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit H5404_19165 PF13375 RnfC Barrel sandwich hybrid domain H5404_19165 PF12838 4Fe-4S dicluster domain H5404_19170 PF03116 NQR2, RnfD, RnfE family H5404_19175 PF04205 FMN-binding domain H5404_19180 PF02508 Rnf-Nqr subunit, membrane protein H5404_19185 PF10576 Iron-sulfur binding domain of endonuclease III H5404_19185 PF00633 Helix-hairpin-helix motif H5404_19185 PF00730 HhH-GPD superfamily base excision DNA repair protein H5404_19190 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H5404_19195 PF10952 Protein of unknown function (DUF2753) H5404_19200 PF00691 OmpA family H5404_19200 PF18393 MotY N-terminal domain H5404_19205 PF00929 Exonuclease H5404_19210 PF03553 Na+/H+ antiporter family H5404_19210 PF13726 Na+-H+ antiporter family H5404_19220 PF00462 Glutaredoxin H5404_19225 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain H5404_19225 PF02777 Iron/manganese superoxide dismutases, C-terminal domain H5404_19240 PF00171 Aldehyde dehydrogenase family H5404_19240 PF00465 Iron-containing alcohol dehydrogenase H5404_19245 PF01914 MarC family integral membrane protein H5404_19250 PF00520 Ion transport protein H5404_19250 PF00027 Cyclic nucleotide-binding domain H5404_19255 PF01118 Semialdehyde dehydrogenase, NAD binding domain H5404_19255 PF02774 Semialdehyde dehydrogenase, dimerisation domain H5404_19260 PF03553 Na+/H+ antiporter family H5404_19275 PF04245 37-kD nucleoid-associated bacterial protein H5404_19280 PF07208 Protein of unknown function (DUF1414) H5404_19285 PF00884 Sulfatase H5404_19285 PF11893 Domain of unknown function (DUF3413) H5404_19295 PF00850 Histone deacetylase domain H5404_19300 PF00106 short chain dehydrogenase H5404_19310 PF01751 Toprim domain H5404_19310 PF01131 DNA topoisomerase H5404_19315 PF00881 Nitroreductase family H5404_19320 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5404_19320 PF00724 NADH:flavin oxidoreductase / NADH oxidase family H5404_19325 PF01343 Peptidase family S49 H5404_19330 PF17763 Glutaminase/Asparaginase C-terminal domain H5404_19330 PF00710 Asparaginase, N-terminal H5404_19335 PF07023 Protein of unknown function (DUF1315) H5404_19345 PF01641 SelR domain H5404_19350 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain H5404_19350 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain H5404_19360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_19360 PF00672 HAMP domain H5404_19360 PF02743 Cache domain H5404_19365 PF13847 Methyltransferase domain H5404_19380 PF00245 Alkaline phosphatase H5404_19390 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H5404_19395 PF03992 Antibiotic biosynthesis monooxygenase H5404_19400 PF00924 Mechanosensitive ion channel H5404_19400 PF05552 Conserved TM helix H5404_19405 PF03692 Putative zinc- or iron-chelating domain H5404_19410 PF04226 Transglycosylase associated protein H5404_19415 PF03692 Putative zinc- or iron-chelating domain H5404_19425 PF03313 Serine dehydratase alpha chain H5404_19430 PF01042 Endoribonuclease L-PSP H5404_19440 PF00230 Major intrinsic protein H5404_19445 PF02132 RecR protein H5404_19445 PF13662 Toprim domain H5404_19450 PF02575 YbaB/EbfC DNA-binding family H5404_19455 PF12170 DNA polymerase III tau subunit V interacting with alpha H5404_19455 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding H5404_19455 PF12169 DNA polymerase III subunits gamma and tau domain III H5404_19460 PF00156 Phosphoribosyl transferase domain H5404_19465 PF04304 Protein of unknown function (DUF454) H5404_19470 PF00072 Response regulator receiver domain H5404_19475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_19475 PF03466 LysR substrate binding domain H5404_19480 PF00156 Phosphoribosyl transferase domain H5404_19485 PF02674 Colicin V production protein H5404_19490 PF05036 Sporulation related domain H5404_19495 PF08245 Mur ligase middle domain H5404_19495 PF02875 Mur ligase family, glutamate ligase domain H5404_19500 PF01039 Carboxyl transferase domain H5404_19500 PF17848 Acetyl-coA carboxylase zinc finger domain H5404_19505 PF01416 tRNA pseudouridine synthase H5404_19515 PF02774 Semialdehyde dehydrogenase, dimerisation domain H5404_19515 PF01118 Semialdehyde dehydrogenase, NAD binding domain H5404_19520 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain H5404_19520 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain H5404_19520 PF11890 Domain of unknown function (DUF3410) H5404_19525 PF02801 Beta-ketoacyl synthase, C-terminal domain H5404_19525 PF00109 Beta-ketoacyl synthase, N-terminal domain H5404_19530 PF05430 S-adenosyl-L-methionine-dependent methyltransferase H5404_19530 PF01266 FAD dependent oxidoreductase H5404_19535 PF03358 NADPH-dependent FMN reductase H5404_19540 PF08891 YfcL protein H5404_19545 PF04315 Elongation factor P hydroxylase H5404_19550 PF03458 UPF0126 domain H5404_19555 PF01264 Chorismate synthase H5404_19560 PF05175 Methyltransferase small domain H5404_19565 PF01713 Smr domain H5404_19570 PF00300 Histidine phosphatase superfamily (branch 1) H5404_19575 PF16187 Middle or third domain of peptidase_M16 H5404_19575 PF05193 Peptidase M16 inactive domain H5404_19575 PF00675 Insulinase (Peptidase family M16) H5404_19585 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain H5404_19585 PF00378 Enoyl-CoA hydratase/isomerase H5404_19585 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain H5404_19590 PF00108 Thiolase, N-terminal domain H5404_19590 PF02803 Thiolase, C-terminal domain H5404_19595 PF08281 Sigma-70, region 4 H5404_19595 PF04542 Sigma-70 region 2 H5404_19605 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) H5404_19610 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) H5404_19615 PF04333 MlaA lipoprotein H5404_19625 PF03918 Cytochrome C biogenesis protein H5404_19630 PF08534 Redoxin H5404_19635 PF01578 Cytochrome C assembly protein H5404_19635 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal H5404_19640 PF03100 CcmE H5404_19645 PF04995 Heme exporter protein D (CcmD) H5404_19650 PF01578 Cytochrome C assembly protein H5404_19655 PF03379 CcmB protein H5404_19660 PF00005 ABC transporter H5404_19670 PF01584 CheW-like domain H5404_19680 PF13614 AAA domain H5404_19685 PF01339 CheB methylesterase H5404_19685 PF00072 Response regulator receiver domain H5404_19690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_19690 PF00072 Response regulator receiver domain H5404_19690 PF01627 Hpt domain H5404_19690 PF02895 Signal transducing histidine kinase, homodimeric domain H5404_19690 PF01584 CheW-like domain H5404_19695 PF04344 Chemotaxis phosphatase, CheZ H5404_19700 PF00072 Response regulator receiver domain H5404_19705 PF04539 Sigma-70 region 3 H5404_19705 PF04542 Sigma-70 region 2 H5404_19705 PF04545 Sigma-70, region 4 H5404_19710 PF10609 NUBPL iron-transfer P-loop NTPase H5404_19715 PF00448 SRP54-type protein, GTPase domain H5404_19720 PF00771 FHIPEP family H5404_19725 PF01312 FlhB HrpN YscU SpaS Family H5404_19730 PF01311 Bacterial export proteins, family 1 H5404_19735 PF01313 Bacterial export proteins, family 3 H5404_19740 PF00813 FliP family H5404_19745 PF04347 Flagellar biosynthesis protein, FliO H5404_19750 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term H5404_19755 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term H5404_19755 PF02154 Flagellar motor switch protein FliM H5404_19775 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain H5404_19775 PF18269 T3SS EscN ATPase C-terminal domain H5404_19785 PF14842 FliG N-terminal domain H5404_19785 PF01706 FliG C-terminal domain H5404_19785 PF14841 FliG middle domain H5404_19790 PF01514 Secretory protein of YscJ/FliF family H5404_19790 PF08345 Flagellar M-ring protein C-terminal H5404_19795 PF02049 Flagellar hook-basal body complex protein FliE H5404_19800 PF00158 Sigma-54 interaction domain H5404_19800 PF00072 Response regulator receiver domain H5404_19800 PF02954 Bacterial regulatory protein, Fis family H5404_19805 PF13188 PAS domain H5404_19805 PF00512 His Kinase A (phospho-acceptor) domain H5404_19805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_19810 PF02954 Bacterial regulatory protein, Fis family H5404_19810 PF00158 Sigma-54 interaction domain H5404_19810 PF06490 Flagellar regulatory protein FleQ H5404_19815 PF02561 Flagellar protein FliS H5404_19825 PF02465 Flagellar hook-associated protein 2 N-terminus H5404_19825 PF07196 Flagellin hook IN motif H5404_19825 PF07195 Flagellar hook-associated protein 2 C-terminus H5404_19830 PF03646 FlaG protein H5404_19835 PF07196 Flagellin hook IN motif H5404_19835 PF00700 Bacterial flagellin C-terminal helical region H5404_19835 PF00669 Bacterial flagellin N-terminal helical region H5404_19840 PF00700 Bacterial flagellin C-terminal helical region H5404_19840 PF07196 Flagellin hook IN motif H5404_19840 PF00669 Bacterial flagellin N-terminal helical region H5404_19845 PF00669 Bacterial flagellin N-terminal helical region H5404_19845 PF00700 Bacterial flagellin C-terminal helical region H5404_19845 PF07196 Flagellin hook IN motif H5404_19850 PF14706 Transposase DNA-binding H5404_19850 PF02281 Transposase Tn5 dimerisation domain H5404_19850 PF01609 Transposase DDE domain H5404_19855 PF04261 Dyp-type peroxidase family H5404_19860 PF11143 Protein of unknown function (DUF2919) H5404_19880 PF03960 ArsC family H5404_19885 PF07687 Peptidase dimerisation domain H5404_19885 PF01546 Peptidase family M20/M25/M40 H5404_19900 PF06804 NlpB/DapX lipoprotein H5404_19905 PF00701 Dihydrodipicolinate synthetase family H5404_19910 PF01842 ACT domain H5404_19915 PF00578 AhpC/TSA family H5404_19920 PF01594 AI-2E family transporter H5404_19930 PF01435 Peptidase family M48 H5404_19930 PF13181 Tetratricopeptide repeat H5404_19935 PF03960 ArsC family H5404_19940 PF03358 NADPH-dependent FMN reductase H5404_19955 PF00860 Permease family H5404_19965 PF00586 AIR synthase related protein, N-terminal domain H5404_19965 PF02769 AIR synthase related protein, C-terminal domain H5404_19970 PF00551 Formyl transferase H5404_19975 PF13230 Glutamine amidotransferases class-II H5404_19980 PF13580 SIS domain H5404_19985 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H5404_19985 PF02770 Acyl-CoA dehydrogenase, middle domain H5404_19985 PF09317 Domain of unknown function (DUF1974) H5404_19985 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H5404_19990 PF01740 STAS domain H5404_19990 PF00916 Sulfate permease family H5404_19995 PF00583 Acetyltransferase (GNAT) family H5404_20015 PF00929 Exonuclease H5404_20020 PF00075 RNase H H5404_20025 PF08241 Methyltransferase domain H5404_20030 PF00753 Metallo-beta-lactamase superfamily H5404_20030 PF16123 Hydroxyacylglutathione hydrolase C-terminus H5404_20035 PF01476 LysM domain H5404_20035 PF01464 Transglycosylase SLT domain H5404_20045 PF03372 Endonuclease/Exonuclease/phosphatase family H5404_20050 PF00543 Nitrogen regulatory protein P-II H5404_20055 PF00034 Cytochrome c H5404_20060 PF09179 TilS substrate binding domain H5404_20060 PF01171 PP-loop family H5404_20060 PF11734 TilS substrate C-terminal domain H5404_20065 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit H5404_20070 PF14579 Helix-hairpin-helix motif H5404_20070 PF07733 Bacterial DNA polymerase III alpha NTPase domain H5404_20070 PF17657 Bacterial DNA polymerase III alpha subunit finger domain H5404_20070 PF01336 OB-fold nucleic acid binding domain H5404_20070 PF02811 PHP domain H5404_20075 PF01351 Ribonuclease HII H5404_20080 PF02684 Lipid-A-disaccharide synthetase H5404_20085 PF00132 Bacterial transferase hexapeptide (six repeats) H5404_20085 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 H5404_20090 PF07977 FabA-like domain H5404_20095 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD H5404_20095 PF00132 Bacterial transferase hexapeptide (six repeats) H5404_20100 PF03938 Outer membrane protein (OmpH-like) H5404_20105 PF07244 Surface antigen variable number repeat H5404_20105 PF01103 Surface antigen H5404_20110 PF02163 Peptidase family M50 H5404_20110 PF17820 PDZ domain H5404_20115 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain H5404_20115 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase H5404_20115 PF13288 DXP reductoisomerase C-terminal domain H5404_20125 PF01255 Putative undecaprenyl diphosphate synthase H5404_20130 PF01765 Ribosome recycling factor H5404_20135 PF00696 Amino acid kinase family H5404_20140 PF00889 Elongation factor TS H5404_20145 PF00318 Ribosomal protein S2 H5404_20150 PF00557 Metallopeptidase family M24 H5404_20155 PF01966 HD domain H5404_20155 PF01909 Nucleotidyltransferase domain H5404_20155 PF01842 ACT domain H5404_20155 PF08335 GlnD PII-uridylyltransferase H5404_20160 PF11944 Protein of unknown function (DUF3461) H5404_20165 PF00849 RNA pseudouridylate synthase H5404_20170 PF04287 tRNA pseudouridine synthase C H5404_20195 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 H5404_20200 PF03806 AbgT putative transporter family H5404_20205 PF00444 Ribosomal protein L36 H5404_20210 PF01197 Ribosomal protein L31 H5404_20215 PF01980 tRNA-methyltransferase O H5404_20215 PF18389 TrmO C-terminal domain H5404_20220 PF04073 Aminoacyl-tRNA editing domain H5404_20220 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) H5404_20220 PF03129 Anticodon binding domain H5404_20230 PF06786 Uncharacterised protein family (UPF0253) H5404_20240 PF00209 Sodium:neurotransmitter symporter family H5404_20255 PF01272 Transcription elongation factor, GreA/GreB, C-term H5404_20255 PF03449 Transcription elongation factor, N-terminal H5404_20260 PF09382 RQC domain H5404_20260 PF16124 RecQ zinc-binding H5404_20260 PF00570 HRDC domain H5404_20260 PF00271 Helicase conserved C-terminal domain H5404_20260 PF00270 DEAD/DEAH box helicase H5404_20265 PF11798 IMS family HHH motif H5404_20265 PF11799 impB/mucB/samB family C-terminal domain H5404_20265 PF00817 impB/mucB/samB family H5404_20280 PF02424 ApbE family H5404_20285 PF00175 Oxidoreductase NAD-binding domain H5404_20285 PF00111 2Fe-2S iron-sulfur cluster binding domain H5404_20285 PF00970 Oxidoreductase FAD-binding domain H5404_20290 PF02508 Rnf-Nqr subunit, membrane protein H5404_20295 PF02508 Rnf-Nqr subunit, membrane protein H5404_20300 PF04205 FMN-binding domain H5404_20305 PF03116 NQR2, RnfD, RnfE family H5404_20310 PF11973 NQRA C-terminal domain H5404_20310 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) H5404_20315 PF01722 BolA-like protein H5404_20320 PF05175 Methyltransferase small domain H5404_20325 PF08139 Prokaryotic membrane lipoprotein lipid attachment site H5404_20325 PF03923 Uncharacterized lipoprotein H5404_20330 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD H5404_20335 PF07690 Major Facilitator Superfamily H5404_20345 PF04542 Sigma-70 region 2 H5404_20345 PF04545 Sigma-70, region 4 H5404_20360 PF03502 Nucleoside-specific channel-forming protein, Tsx H5404_20365 PF08546 Ketopantoate reductase PanE/ApbA C terminal H5404_20365 PF02558 Ketopantoate reductase PanE/ApbA H5404_20370 PF01965 DJ-1/PfpI family H5404_20375 PF00266 Aminotransferase class-V H5404_20380 PF17158 Membrane-associated sensor, integral membrane domain H5404_20380 PF00990 Diguanylate cyclase, GGDEF domain H5404_20385 PF02657 Fe-S metabolism associated domain H5404_20390 PF00899 ThiF family H5404_20395 PF03562 MltA specific insert domain H5404_20395 PF06725 3D domain H5404_20405 PF00583 Acetyltransferase (GNAT) family H5404_20405 PF00696 Amino acid kinase family H5404_20415 PF13538 UvrD-like helicase C-terminal domain H5404_20420 PF13361 UvrD-like helicase C-terminal domain H5404_20420 PF12705 PD-(D/E)XK nuclease superfamily H5404_20420 PF00580 UvrD/REP helicase N-terminal domain H5404_20425 PF17946 RecC C-terminal domain H5404_20430 PF00884 Sulfatase H5404_20430 PF11893 Domain of unknown function (DUF3413) H5404_20440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_20440 PF03466 LysR substrate binding domain H5404_20445 PF07130 YebG protein H5404_20450 PF14602 Hexapeptide repeat of succinyl-transferase H5404_20450 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle H5404_20455 PF03009 Glycerophosphoryl diester phosphodiesterase family H5404_20460 PF07690 Major Facilitator Superfamily H5404_20465 PF00230 Major intrinsic protein H5404_20470 PF00370 FGGY family of carbohydrate kinases, N-terminal domain H5404_20470 PF02782 FGGY family of carbohydrate kinases, C-terminal domain H5404_20475 PF08220 DeoR-like helix-turn-helix domain H5404_20475 PF00455 DeoR C terminal sensor domain H5404_20480 PF01266 FAD dependent oxidoreductase H5404_20480 PF16901 C-terminal domain of alpha-glycerophosphate oxidase H5404_20485 PF01544 CorA-like Mg2+ transporter protein H5404_20505 PF01588 Putative tRNA binding domain H5404_20510 PF00356 Bacterial regulatory proteins, lacI family H5404_20515 PF17657 Bacterial DNA polymerase III alpha subunit finger domain H5404_20515 PF14579 Helix-hairpin-helix motif H5404_20515 PF02811 PHP domain H5404_20515 PF00929 Exonuclease H5404_20515 PF07733 Bacterial DNA polymerase III alpha NTPase domain H5404_20525 PF00474 Sodium:solute symporter family H5404_20530 PF01263 Aldose 1-epimerase H5404_20535 PF00288 GHMP kinases N terminal domain H5404_20535 PF08544 GHMP kinases C terminal H5404_20535 PF10509 Galactokinase galactose-binding signature H5404_20540 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain H5404_20540 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain H5404_20545 PF16363 GDP-mannose 4,6 dehydratase H5404_20550 PF00356 Bacterial regulatory proteins, lacI family H5404_20555 PF02837 Glycosyl hydrolases family 2, sugar binding domain H5404_20555 PF16353 Domain of unknown function(DUF4981) H5404_20555 PF00703 Glycosyl hydrolases family 2 H5404_20555 PF02836 Glycosyl hydrolases family 2, TIM barrel domain H5404_20555 PF02929 Beta galactosidase small chain H5404_20560 PF04074 YhcH/YjgK/YiaL H5404_20565 PF13520 Amino acid permease H5404_20570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_20570 PF03466 LysR substrate binding domain H5404_20600 PF00437 Type II/IV secretion system protein H5404_20630 PF04972 BON domain H5404_20630 PF00263 Bacterial type II and III secretion system protein H5404_20630 PF13629 Pilus formation protein N terminal region H5404_20655 PF02805 Metal binding domain of Ada H5404_20655 PF12833 Helix-turn-helix domain H5404_20660 PF00501 AMP-binding enzyme H5404_20670 PF03466 LysR substrate binding domain H5404_20670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_20675 PF00679 Elongation factor G C-terminus H5404_20675 PF14492 Elongation Factor G, domain II H5404_20675 PF03764 Elongation factor G, domain IV H5404_20675 PF00009 Elongation factor Tu GTP binding domain H5404_20675 PF03144 Elongation factor Tu domain 2 H5404_20680 PF18073 Rubredoxin metal binding domain H5404_20690 PF18429 Domain of unknown function (DUF5609) H5404_20700 PF01048 Phosphorylase superfamily H5404_20705 PF01676 Metalloenzyme superfamily H5404_20710 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain H5404_20710 PF02885 Glycosyl transferase family, helical bundle domain H5404_20710 PF00591 Glycosyl transferase family, a/b domain H5404_20715 PF01791 DeoC/LacD family aldolase H5404_20720 PF01773 Na+ dependent nucleoside transporter N-terminus H5404_20720 PF07662 Na+ dependent nucleoside transporter C-terminus H5404_20720 PF07670 Nucleoside recognition H5404_20725 PF01026 TatD related DNase H5404_20735 PF00009 Elongation factor Tu GTP binding domain H5404_20735 PF03144 Elongation factor Tu domain 2 H5404_20735 PF16658 Class II release factor RF3, C-terminal domain H5404_20755 PF13508 Acetyltransferase (GNAT) domain H5404_20760 PF02036 SCP-2 sterol transfer family H5404_20765 PF00990 Diguanylate cyclase, GGDEF domain H5404_20765 PF00563 EAL domain H5404_20765 PF03707 Bacterial signalling protein N terminal repeat H5404_20770 PF01136 Peptidase family U32 H5404_20775 PF01136 Peptidase family U32 H5404_20780 PF01554 MatE H5404_20790 PF13181 Tetratricopeptide repeat H5404_20790 PF07719 Tetratricopeptide repeat H5404_20795 PF01138 3' exoribonuclease family, domain 1 H5404_20795 PF00575 S1 RNA binding domain H5404_20795 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain H5404_20795 PF00013 KH domain H5404_20795 PF03725 3' exoribonuclease family, domain 2 H5404_20800 PF00312 Ribosomal protein S15 H5404_20805 PF01509 TruB family pseudouridylate synthase (N terminal domain) H5404_20805 PF16198 tRNA pseudouridylate synthase B C-terminal domain H5404_20805 PF09157 Pseudouridine synthase II TruB, C-terminal H5404_20810 PF02033 Ribosome-binding factor A H5404_20815 PF00009 Elongation factor Tu GTP binding domain H5404_20815 PF11987 Translation-initiation factor 2 H5404_20815 PF08364 Bacterial translation initiation factor IF-2 associated region H5404_20815 PF04760 Translation initiation factor IF-2, N-terminal region H5404_20820 PF13184 NusA-like KH domain H5404_20820 PF00575 S1 RNA binding domain H5404_20820 PF08529 NusA N-terminal domain H5404_20825 PF02576 RimP N-terminal domain H5404_20825 PF17384 RimP C-terminal SH3 domain H5404_20840 PF03840 Preprotein translocase SecG subunit H5404_20845 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain H5404_20845 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III H5404_20845 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I H5404_20845 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II H5404_20850 PF00809 Pterin binding enzyme H5404_20855 PF17862 AAA+ lid domain H5404_20855 PF06480 FtsH Extracellular H5404_20855 PF00004 ATPase family associated with various cellular activities (AAA) H5404_20855 PF01434 Peptidase family M41 H5404_20860 PF01728 FtsJ-like methyltransferase H5404_20865 PF01985 CRS1 / YhbY (CRM) domain H5404_20870 PF03449 Transcription elongation factor, N-terminal H5404_20870 PF01272 Transcription elongation factor, GreA/GreB, C-term H5404_20875 PF13609 Gram-negative porin H5404_20880 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family H5404_20890 PF00579 tRNA synthetases class I (W and Y) H5404_20895 PF08525 Opacity-associated protein A N-terminal motif H5404_20895 PF01551 Peptidase family M23 H5404_20895 PF01476 LysM domain H5404_20900 PF00873 AcrB/AcrD/AcrF family H5404_20910 PF01521 Iron-sulphur cluster biosynthesis H5404_20915 PF00202 Aminotransferase class-III H5404_20920 PF01594 AI-2E family transporter H5404_20925 PF08468 Methyltransferase small domain N-terminal H5404_20925 PF05175 Methyltransferase small domain H5404_20930 PF00497 Bacterial extracellular solute-binding proteins, family 3 H5404_20930 PF00072 Response regulator receiver domain H5404_20930 PF00512 His Kinase A (phospho-acceptor) domain H5404_20930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_20935 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle H5404_20940 PF00528 Binding-protein-dependent transport system inner membrane component H5404_20945 PF12911 N-terminal TM domain of oligopeptide transport permease C H5404_20945 PF00528 Binding-protein-dependent transport system inner membrane component H5404_20950 PF00005 ABC transporter H5404_20950 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H5404_20955 PF00005 ABC transporter H5404_20955 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H5404_20965 PF01869 BadF/BadG/BcrA/BcrD ATPase family H5404_20970 PF00728 Glycosyl hydrolase family 20, catalytic domain H5404_20970 PF02838 Glycosyl hydrolase family 20, domain 2 H5404_20975 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain H5404_20975 PF06165 Glycosyltransferase family 36 H5404_20980 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I H5404_20980 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II H5404_20980 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III H5404_20980 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain H5404_20985 PF00005 ABC transporter H5404_20985 PF08402 TOBE domain H5404_20995 PF13416 Bacterial extracellular solute-binding protein H5404_21000 PF00909 Ammonium Transporter Family H5404_21005 PF00543 Nitrogen regulatory protein P-II H5404_21010 PF06062 Uncharacterised protein family (UPF0231) H5404_21015 PF11791 Aconitate B N-terminal domain H5404_21015 PF06434 Aconitate hydratase 2 N-terminus H5404_21015 PF00330 Aconitase family (aconitate hydratase) H5404_21020 PF01734 Patatin-like phospholipase H5404_21025 PF00912 Transglycosylase H5404_21025 PF14814 Bifunctional transglycosylase second domain H5404_21025 PF00905 Penicillin binding protein transpeptidase domain H5404_21030 PF04408 Helicase associated domain (HA2) H5404_21030 PF00270 DEAD/DEAH box helicase H5404_21030 PF08482 ATP-dependent helicase C-terminal H5404_21030 PF00271 Helicase conserved C-terminal domain H5404_21035 PF03749 Sugar fermentation stimulation protein RE domain H5404_21035 PF17746 SfsA N-terminal OB domain H5404_21040 PF01258 Prokaryotic dksA/traR C4-type zinc finger H5404_21045 PF00749 tRNA synthetases class I (E and Q), catalytic domain H5404_21050 PF12627 Probable RNA and SrmB- binding site of polymerase A H5404_21050 PF12626 Polymerase A arginine-rich C-terminus H5404_21050 PF01743 Poly A polymerase head domain H5404_21055 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) H5404_21060 PF02548 Ketopantoate hydroxymethyltransferase H5404_21065 PF02569 Pantoate-beta-alanine ligase H5404_21070 PF03279 Bacterial lipid A biosynthesis acyltransferase H5404_21075 PF01061 ABC-2 type transporter H5404_21080 PF00005 ABC transporter H5404_21085 PF00916 Sulfate permease family H5404_21085 PF01740 STAS domain H5404_21090 PF00484 Carbonic anhydrase H5404_21095 PF00156 Phosphoribosyl transferase domain H5404_21100 PF00440 Bacterial regulatory proteins, tetR family H5404_21105 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5404_21105 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain H5404_21110 PF02817 e3 binding domain H5404_21110 PF00364 Biotin-requiring enzyme H5404_21110 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) H5404_21115 PF00456 Transketolase, thiamine diphosphate binding domain H5404_21115 PF17831 Pyruvate dehydrogenase E1 component middle domain H5404_21120 PF07729 FCD domain H5404_21120 PF00392 Bacterial regulatory proteins, gntR family H5404_21125 PF01510 N-acetylmuramoyl-L-alanine amidase H5404_21130 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain H5404_21130 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain H5404_21140 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain H5404_21140 PF00437 Type II/IV secretion system protein H5404_21145 PF00482 Type II secretion system (T2SS), protein F H5404_21150 PF06750 Bacterial Peptidase A24 N-terminal domain H5404_21150 PF01478 Type IV leader peptidase family H5404_21155 PF01121 Dephospho-CoA kinase H5404_21160 PF07072 Cell division protein H5404_21165 PF03884 DNA gyrase inhibitor YacG H5404_21170 PF01245 Ribosomal protein L19 H5404_21175 PF01746 tRNA (Guanine-1)-methyltransferase H5404_21180 PF01782 RimM N-terminal domain H5404_21180 PF05239 PRC-barrel domain H5404_21185 PF00886 Ribosomal protein S16 H5404_21190 PF00448 SRP54-type protein, GTPase domain H5404_21190 PF02881 SRP54-type protein, helical bundle domain H5404_21190 PF02978 Signal peptide binding domain H5404_21195 PF01578 Cytochrome C assembly protein H5404_21200 PF03471 Transporter associated domain H5404_21200 PF01595 Cyclin M transmembrane N-terminal domain H5404_21200 PF00571 CBS domain H5404_21205 PF02664 S-Ribosylhomocysteinase (LuxS) H5404_21215 PF04262 Glutamate-cysteine ligase H5404_21220 PF05193 Peptidase M16 inactive domain H5404_21220 PF00675 Insulinase (Peptidase family M16) H5404_21225 PF09335 SNARE associated Golgi protein H5404_21230 PF00107 Zinc-binding dehydrogenase H5404_21230 PF08240 Alcohol dehydrogenase GroES-like domain H5404_21235 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit H5404_21240 PF02436 Conserved carboxylase domain H5404_21240 PF00364 Biotin-requiring enzyme H5404_21240 PF00682 HMGL-like H5404_21245 PF04277 Oxaloacetate decarboxylase, gamma chain H5404_21300 PF02599 Global regulator protein family H5404_21305 PF13840 ACT domain H5404_21305 PF01842 ACT domain H5404_21305 PF00696 Amino acid kinase family H5404_21310 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain H5404_21310 PF02272 DHHA1 domain H5404_21310 PF01411 tRNA synthetases class II (A) H5404_21315 PF02631 RecX family H5404_21320 PF00154 recA bacterial DNA recombination protein H5404_21325 PF02464 Competence-damaged protein H5404_21330 PF01624 MutS domain I H5404_21330 PF05192 MutS domain III H5404_21330 PF05190 MutS family domain IV H5404_21330 PF05188 MutS domain II H5404_21330 PF00488 MutS domain V H5404_21335 PF04545 Sigma-70, region 4 H5404_21335 PF00140 Sigma-70 factor, region 1.2 H5404_21335 PF04542 Sigma-70 region 2 H5404_21335 PF04539 Sigma-70 region 3 H5404_21340 PF01476 LysM domain H5404_21340 PF01551 Peptidase family M23 H5404_21350 PF01975 Survival protein SurE H5404_21355 PF01142 tRNA pseudouridine synthase D (TruD) H5404_21360 PF02542 YgbB family H5404_21365 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase H5404_21370 PF04977 Septum formation initiator H5404_21375 PF00113 Enolase, C-terminal TIM barrel domain H5404_21375 PF03952 Enolase, N-terminal domain H5404_21380 PF00117 Glutamine amidotransferase class-I H5404_21380 PF06418 CTP synthase N-terminus H5404_21385 PF03819 MazG nucleotide pyrophosphohydrolase domain H5404_21390 PF04607 Region found in RelA / SpoT proteins H5404_21390 PF13291 ACT domain H5404_21390 PF02824 TGS domain H5404_21395 PF01938 TRAM domain H5404_21395 PF05958 tRNA (Uracil-5-)-methyltransferase H5404_21400 PF00512 His Kinase A (phospho-acceptor) domain H5404_21400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_21400 PF00672 HAMP domain H5404_21400 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) H5404_21400 PF01627 Hpt domain H5404_21400 PF00072 Response regulator receiver domain H5404_21405 PF01648 4'-phosphopantetheinyl transferase superfamily H5404_21410 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ H5404_21415 PF02565 Recombination protein O C terminal H5404_21415 PF11967 Recombination protein O N terminal H5404_21420 PF01926 50S ribosome-binding GTPase H5404_21420 PF07650 KH domain H5404_21425 PF00035 Double-stranded RNA binding motif H5404_21425 PF14622 Ribonuclease-III-like H5404_21430 PF10502 Signal peptidase, peptidase S26 H5404_21435 PF03144 Elongation factor Tu domain 2 H5404_21435 PF00009 Elongation factor Tu GTP binding domain H5404_21435 PF00679 Elongation factor G C-terminus H5404_21435 PF06421 GTP-binding protein LepA C-terminus H5404_21445 PF03888 MucB/RseB N-terminal domain H5404_21445 PF17188 MucB/RseB C-terminal domain H5404_21450 PF03872 Anti sigma-E protein RseA, N-terminal domain H5404_21450 PF03873 Anti sigma-E protein RseA, C-terminal domain H5404_21455 PF08281 Sigma-70, region 4 H5404_21455 PF04542 Sigma-70 region 2 H5404_21460 PF00890 FAD binding domain H5404_21460 PF02910 Fumarate reductase flavoprotein C-term H5404_21465 PF03937 Flavinator of succinate dehydrogenase H5404_21470 PF01571 Aminomethyltransferase folate-binding domain H5404_21485 PF01494 FAD binding domain H5404_21490 PF01494 FAD binding domain H5404_21495 PF03695 Uncharacterised protein family (UPF0149) H5404_21500 PF05164 Cell division protein ZapA H5404_21510 PF01812 5-formyltetrahydrofolate cyclo-ligase family H5404_21515 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) H5404_21520 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain H5404_21520 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain H5404_21520 PF01842 ACT domain H5404_21525 PF04402 Protein of unknown function (DUF541) H5404_21530 PF03466 LysR substrate binding domain H5404_21530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_21535 PF01810 LysE type translocator H5404_21540 PF04073 Aminoacyl-tRNA editing domain H5404_21545 PF05552 Conserved TM helix H5404_21545 PF00924 Mechanosensitive ion channel H5404_21550 PF01116 Fructose-bisphosphate aldolase class-II H5404_21555 PF00162 Phosphoglycerate kinase H5404_21560 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain H5404_21560 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain H5404_21565 PF07715 TonB-dependent Receptor Plug Domain H5404_21565 PF00593 TonB dependent receptor H5404_21570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_21570 PF03466 LysR substrate binding domain H5404_21575 PF02780 Transketolase, C-terminal domain H5404_21575 PF00456 Transketolase, thiamine diphosphate binding domain H5404_21575 PF02779 Transketolase, pyrimidine binding domain H5404_21580 PF02773 S-adenosylmethionine synthetase, C-terminal domain H5404_21580 PF02772 S-adenosylmethionine synthetase, central domain H5404_21580 PF00438 S-adenosylmethionine synthetase, N-terminal domain H5404_21590 PF17283 SprT-like zinc ribbon domain H5404_21590 PF10263 SprT-like family H5404_21595 PF04231 Endonuclease I H5404_21600 PF04452 RNA methyltransferase H5404_21605 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain H5404_21605 PF02951 Prokaryotic glutathione synthetase, N-terminal domain H5404_21610 PF02622 Uncharacterized ACR, COG1678 H5404_21615 PF03652 Holliday junction resolvase H5404_21620 PF00437 Type II/IV secretion system protein H5404_21625 PF00437 Type II/IV secretion system protein H5404_21630 PF01168 Alanine racemase, N-terminal domain H5404_21635 PF03807 NADP oxidoreductase coenzyme F420-dependent H5404_21635 PF14748 Pyrroline-5-carboxylate reductase dimerisation H5404_21640 PF02325 YGGT family H5404_21645 PF02594 Uncharacterised ACR, YggU family COG1872 H5404_21655 PF01725 Ham1 family H5404_21660 PF06969 HemN C-terminal domain H5404_21660 PF04055 Radical SAM superfamily H5404_21665 PF04960 Glutaminase H5404_21670 PF02086 D12 class N6 adenine-specific DNA methyltransferase H5404_21675 PF02390 Putative methyltransferase H5404_21680 PF00633 Helix-hairpin-helix motif H5404_21680 PF00730 HhH-GPD superfamily base excision DNA repair protein H5404_21680 PF14815 NUDIX domain H5404_21685 PF04362 Bacterial Fe(2+) trafficking H5404_21690 PF01464 Transglycosylase SLT domain H5404_21690 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain H5404_21730 PF17200 Single Cache domain 2 H5404_21730 PF00672 HAMP domain H5404_21730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_21760 PF00171 Aldehyde dehydrogenase family H5404_21805 PF00072 Response regulator receiver domain H5404_21810 PF00356 Bacterial regulatory proteins, lacI family H5404_21810 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family H5404_21815 PF04794 YdjC-like protein H5404_21820 PF02056 Family 4 glycosyl hydrolase H5404_21820 PF11975 Family 4 glycosyl hydrolase C-terminal domain H5404_21825 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit H5404_21830 PF02378 Phosphotransferase system, EIIC H5404_21835 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit H5404_21840 PF01522 Polysaccharide deacetylase H5404_21850 PF00106 short chain dehydrogenase H5404_21855 PF10011 Predicted membrane protein (DUF2254) H5404_21865 PF03739 Lipopolysaccharide export system permease LptF/LptG H5404_21870 PF03739 Lipopolysaccharide export system permease LptF/LptG H5404_21875 PF02789 Cytosol aminopeptidase family, N-terminal domain H5404_21875 PF00883 Cytosol aminopeptidase family, catalytic domain H5404_21880 PF04364 DNA polymerase III chi subunit, HolC H5404_21885 PF08264 Anticodon-binding domain of tRNA H5404_21885 PF10458 Valyl tRNA synthetase tRNA binding arm H5404_21885 PF00133 tRNA synthetases class I (I, L, M and V) H5404_21895 PF00583 Acetyltransferase (GNAT) family H5404_21905 PF06877 Regulator of ribonuclease activity B H5404_21915 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain H5404_21915 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain H5404_21925 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain H5404_21925 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain H5404_21930 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain H5404_21930 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain H5404_21935 PF01042 Endoribonuclease L-PSP H5404_21940 PF01553 Acyltransferase H5404_21945 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) H5404_21950 PF01722 BolA-like protein H5404_21960 PF05494 MlaC protein H5404_21965 PF02470 MlaD protein H5404_21970 PF02405 Permease MlaE H5404_21975 PF00005 ABC transporter H5404_21980 PF01699 Sodium/calcium exchanger protein H5404_21985 PF00571 CBS domain H5404_21985 PF01380 SIS domain H5404_21995 PF03968 OstA-like protein H5404_22000 PF12399 Branched-chain amino acid ATP-binding cassette transporter H5404_22000 PF00005 ABC transporter H5404_22005 PF00309 Sigma-54 factor, Activator interacting domain (AID) H5404_22005 PF04552 Sigma-54, DNA binding domain H5404_22005 PF04963 Sigma-54 factor, core binding domain H5404_22010 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein H5404_22015 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 H5404_22020 PF03668 P-loop ATPase protein family H5404_22025 PF00381 PTS HPr component phosphorylation site H5404_22030 PF00571 CBS domain H5404_22030 PF03448 MgtE intracellular N domain H5404_22030 PF01769 Divalent cation transporter H5404_22035 PF01523 Putative modulator of DNA gyrase H5404_22040 PF04751 Protein of unknown function (DUF615) H5404_22045 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain H5404_22045 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain H5404_22050 PF00849 RNA pseudouridylate synthase H5404_22060 PF12137 RNA polymerase recycling family C-terminal H5404_22060 PF18337 RapA N-terminal Tudor like domain H5404_22060 PF00271 Helicase conserved C-terminal domain H5404_22060 PF00176 SNF2 family N-terminal domain H5404_22060 PF18339 RapA N-terminal Tudor like domain 1 H5404_22065 PF13638 PIN domain H5404_22065 PF02562 PhoH-like protein H5404_22070 PF01523 Putative modulator of DNA gyrase H5404_22075 PF00795 Carbon-nitrogen hydrolase H5404_22080 PF13502 AsmA-like C-terminal region H5404_22080 PF13116 Protein of unknown function H5404_22085 PF10150 Ribonuclease E/G family H5404_22085 PF00575 S1 RNA binding domain H5404_22090 PF02545 Maf-like protein H5404_22095 PF04093 rod shape-determining protein MreD H5404_22100 PF04085 rod shape-determining protein MreC H5404_22140 PF07963 Prokaryotic N-terminal methylation motif H5404_22150 PF00482 Type II secretion system (T2SS), protein F H5404_22155 PF00437 Type II/IV secretion system protein H5404_22155 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain H5404_22165 PF13401 AAA domain H5404_22165 PF01471 Putative peptidoglycan binding domain H5404_22170 PF00263 Bacterial type II and III secretion system protein H5404_22170 PF03958 Bacterial type II/III secretion system short domain H5404_22170 PF07660 Secretin and TonB N terminus short domain H5404_22170 PF11741 AMIN domain H5404_22190 PF00990 Diguanylate cyclase, GGDEF domain H5404_22190 PF17157 Gammaproteobacterial periplasmic sensor domain H5404_22190 PF00563 EAL domain H5404_22195 PF00436 Single-strand binding protein family H5404_22200 PF00196 Bacterial regulatory proteins, luxR family H5404_22205 PF00483 Nucleotidyl transferase H5404_22210 PF00005 ABC transporter H5404_22210 PF17755 UvrA DNA-binding domain H5404_22210 PF17760 UvrA interaction domain H5404_22220 PF00266 Aminotransferase class-V H5404_22225 PF01842 ACT domain H5404_22225 PF00696 Amino acid kinase family H5404_22230 PF02574 Homocysteine S-methyltransferase H5404_22230 PF00809 Pterin binding enzyme H5404_22230 PF02965 Vitamin B12 dependent methionine synthase, activation domain H5404_22230 PF02607 B12 binding domain H5404_22230 PF02310 B12 binding domain H5404_22235 PF00999 Sodium/hydrogen exchanger family H5404_22245 PF13358 DDE superfamily endonuclease H5404_22330 PF01507 Phosphoadenosine phosphosulfate reductase family H5404_22335 PF01077 Nitrite and sulphite reductase 4Fe-4S domain H5404_22335 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain H5404_22340 PF00175 Oxidoreductase NAD-binding domain H5404_22340 PF00258 Flavodoxin H5404_22340 PF00667 FAD binding domain H5404_22360 PF01207 Dihydrouridine synthase (Dus) H5404_22470 PF13958 Toxin ToxN, type III toxin-antitoxin system H5404_22475 PF01475 Ferric uptake regulator family H5404_22485 PF00342 Phosphoglucose isomerase H5404_22490 PF01894 Uncharacterised protein family UPF0047 H5404_22500 PF00842 Alanine racemase, C-terminal domain H5404_22500 PF01168 Alanine racemase, N-terminal domain H5404_22505 PF03796 DnaB-like helicase C terminal domain H5404_22505 PF00772 DnaB-like helicase N terminal domain H5404_22515 PF03948 Ribosomal protein L9, C-terminal domain H5404_22515 PF01281 Ribosomal protein L9, N-terminal domain H5404_22520 PF01084 Ribosomal protein S18 H5404_22525 PF00436 Single-strand binding protein family H5404_22530 PF01250 Ribosomal protein S6 H5404_22535 PF00834 Ribulose-phosphate 3 epimerase family H5404_22540 PF02086 D12 class N6 adenine-specific DNA methyltransferase H5404_22550 PF01761 3-dehydroquinate synthase H5404_22555 PF01202 Shikimate kinase H5404_22560 PF00263 Bacterial type II and III secretion system protein H5404_22560 PF03958 Bacterial type II/III secretion system short domain H5404_22560 PF07660 Secretin and TonB N terminus short domain H5404_22560 PF11741 AMIN domain H5404_22565 PF04351 Pilus assembly protein, PilP H5404_22575 PF05137 Fimbrial assembly protein (PilN) H5404_22585 PF00912 Transglycosylase H5404_22585 PF00905 Penicillin binding protein transpeptidase domain H5404_22585 PF17092 Penicillin-binding protein OB-like domain H5404_22590 PF03466 LysR substrate binding domain H5404_22590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_22595 PF00462 Glutaredoxin H5404_22595 PF08534 Redoxin H5404_22605 PF14698 Argininosuccinate lyase C-terminal H5404_22605 PF00206 Lyase H5404_22605 PF00583 Acetyltransferase (GNAT) family H5404_22610 PF00764 Arginosuccinate synthase H5404_22615 PF00696 Amino acid kinase family H5404_22620 PF01118 Semialdehyde dehydrogenase, NAD binding domain H5404_22620 PF02774 Semialdehyde dehydrogenase, dimerisation domain H5404_22625 PF07687 Peptidase dimerisation domain H5404_22625 PF01546 Peptidase family M20/M25/M40 H5404_22630 PF00311 Phosphoenolpyruvate carboxylase H5404_22640 PF02219 Methylenetetrahydrofolate reductase H5404_22645 PF00696 Amino acid kinase family H5404_22645 PF00742 Homoserine dehydrogenase H5404_22645 PF03447 Homoserine dehydrogenase, NAD binding domain H5404_22650 PF01053 Cys/Met metabolism PLP-dependent enzyme H5404_22655 PF01340 Met Apo-repressor, MetJ H5404_22660 PF00390 Malic enzyme, N-terminal domain H5404_22660 PF03949 Malic enzyme, NAD binding domain H5404_22665 PF00210 Ferritin-like domain H5404_22670 PF04324 BFD-like [2Fe-2S] binding domain H5404_22675 PF00009 Elongation factor Tu GTP binding domain H5404_22675 PF03144 Elongation factor Tu domain 2 H5404_22675 PF03143 Elongation factor Tu C-terminal domain H5404_22680 PF03144 Elongation factor Tu domain 2 H5404_22680 PF14492 Elongation Factor G, domain II H5404_22680 PF00679 Elongation factor G C-terminus H5404_22680 PF03764 Elongation factor G, domain IV H5404_22680 PF00009 Elongation factor Tu GTP binding domain H5404_22685 PF00177 Ribosomal protein S7p/S5e H5404_22690 PF00164 Ribosomal protein S12/S23 H5404_22695 PF04077 DsrH like protein H5404_22700 PF02635 DsrE/DsrF-like family H5404_22705 PF02635 DsrE/DsrF-like family H5404_22710 PF13309 HTH domain H5404_22710 PF08348 YheO-like PAS domain H5404_22715 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase H5404_22715 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase H5404_22725 PF04102 SlyX H5404_22730 PF01112 Asparaginase H5404_22735 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase H5404_22745 PF00999 Sodium/hydrogen exchanger family H5404_22745 PF02254 TrkA-N domain H5404_22750 PF02525 Flavodoxin-like fold H5404_22755 PF00005 ABC transporter H5404_22755 PF12848 ABC transporter H5404_22765 PF00561 alpha/beta hydrolase fold H5404_22770 PF06794 Uncharacterised protein family (UPF0270) H5404_22775 PF00485 Phosphoribulokinase / Uridine kinase family H5404_22780 PF13545 Crp-like helix-turn-helix domain H5404_22780 PF00027 Cyclic nucleotide-binding domain H5404_22790 PF00171 Aldehyde dehydrogenase family H5404_22795 PF04958 Arginine N-succinyltransferase beta subunit H5404_22800 PF00202 Aminotransferase class-III H5404_22805 PF00117 Glutamine amidotransferase class-I H5404_22820 PF00579 tRNA synthetases class I (W and Y) H5404_22825 PF13419 Haloacid dehalogenase-like hydrolase H5404_22830 PF08032 RNA 2'-O ribose methyltransferase substrate binding H5404_22830 PF00588 SpoU rRNA Methylase family H5404_22835 PF17876 Cold shock domain H5404_22835 PF08206 Ribonuclease B OB domain H5404_22835 PF00773 RNB domain H5404_22835 PF08461 Ribonuclease R winged-helix domain H5404_22835 PF00575 S1 RNA binding domain H5404_22840 PF02082 Transcriptional regulator H5404_22845 PF00970 Oxidoreductase FAD-binding domain H5404_22845 PF00042 Globin H5404_22845 PF00175 Oxidoreductase NAD-binding domain H5404_22850 PF08238 Sel1 repeat H5404_22855 PF00709 Adenylosuccinate synthetase H5404_22860 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) H5404_22865 PF01145 SPFH domain / Band 7 family H5404_22870 PF12221 Bacterial membrane protein N terminal H5404_22870 PF01145 SPFH domain / Band 7 family H5404_22875 PF01926 50S ribosome-binding GTPase H5404_22875 PF16360 GTP-binding GTPase Middle Region H5404_22875 PF13167 GTP-binding GTPase N-terminal H5404_22880 PF17209 Hfq protein H5404_22890 PF01119 DNA mismatch repair protein, C-terminal domain H5404_22890 PF08676 MutL C terminal dimerisation domain H5404_22895 PF01520 N-acetylmuramoyl-L-alanine amidase H5404_22900 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE H5404_22905 PF08331 Domain of unknown function (DUF1730) H5404_22975 PF00929 Exonuclease H5404_22980 PF03193 RsgA GTPase H5404_22985 PF02666 Phosphatidylserine decarboxylase H5404_22990 PF00939 Sodium:sulfate symporter transmembrane region H5404_22995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_22995 PF00672 HAMP domain H5404_23005 PF06415 BPG-independent PGAM N-terminus (iPGM_N) H5404_23005 PF01676 Metalloenzyme superfamily H5404_23010 PF00581 Rhodanese-like domain H5404_23015 PF02556 Preprotein translocase subunit SecB H5404_23020 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus H5404_23020 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus H5404_23025 PF06426 Serine acetyltransferase, N-terminal H5404_23025 PF00132 Bacterial transferase hexapeptide (six repeats) H5404_23030 PF01551 Peptidase family M23 H5404_23040 PF00440 Bacterial regulatory proteins, tetR family H5404_23040 PF08360 QacR-like protein, C-terminal region H5404_23050 PF00152 tRNA synthetases class II (D, K and N) H5404_23055 PF00890 FAD binding domain H5404_23055 PF02910 Fumarate reductase flavoprotein C-term H5404_23060 PF13085 2Fe-2S iron-sulfur cluster binding domain H5404_23060 PF13183 4Fe-4S dicluster domain H5404_23065 PF02300 Fumarate reductase subunit C H5404_23070 PF02313 Fumarate reductase subunit D H5404_23080 PF09285 Elongation factor P, C-terminal H5404_23080 PF08207 Elongation factor P (EF-P) KOW-like domain H5404_23080 PF01132 Elongation factor P (EF-P) OB domain H5404_23085 PF04055 Radical SAM superfamily H5404_23090 PF00842 Alanine racemase, C-terminal domain H5404_23090 PF01168 Alanine racemase, N-terminal domain H5404_23095 PF02308 MgtC family H5404_23105 PF00118 TCP-1/cpn60 chaperonin family H5404_23110 PF00166 Chaperonin 10 Kd subunit H5404_23115 PF01554 MatE H5404_23120 PF00365 Phosphofructokinase H5404_23125 PF16916 Dimerisation domain of Zinc Transporter H5404_23125 PF01545 Cation efflux family H5404_23130 PF07813 LTXXQ motif family protein H5404_23135 PF00486 Transcriptional regulatory protein, C terminal H5404_23135 PF00072 Response regulator receiver domain H5404_23140 PF00512 His Kinase A (phospho-acceptor) domain H5404_23140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_23140 PF00672 HAMP domain H5404_23140 PF16527 Two-component sensor protein CpxA, periplasmic domain H5404_23145 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain H5404_23145 PF02777 Iron/manganese superoxide dismutases, C-terminal domain H5404_23150 PF00588 SpoU rRNA Methylase family H5404_23155 PF04186 FxsA cytoplasmic membrane protein H5404_23160 PF10415 Fumarase C C-terminus H5404_23160 PF00206 Lyase H5404_23165 PF03605 Anaerobic c4-dicarboxylate membrane transporter H5404_23170 PF11412 Disulphide bond corrector protein DsbC H5404_23170 PF02683 Cytochrome C biogenesis protein transmembrane region H5404_23175 PF00196 Bacterial regulatory proteins, luxR family H5404_23175 PF00072 Response regulator receiver domain H5404_23180 PF02080 TrkA-C domain H5404_23180 PF00999 Sodium/hydrogen exchanger family H5404_23180 PF03471 Transporter associated domain H5404_23190 PF00474 Sodium:solute symporter family H5404_23205 PF00206 Lyase H5404_23205 PF10415 Fumarase C C-terminus H5404_23210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_23210 PF00512 His Kinase A (phospho-acceptor) domain H5404_23210 PF01627 Hpt domain H5404_23210 PF00672 HAMP domain H5404_23210 PF00072 Response regulator receiver domain H5404_23215 PF12832 MFS_1 like family H5404_23230 PF00501 AMP-binding enzyme H5404_23230 PF16177 Acetyl-coenzyme A synthetase N-terminus H5404_23230 PF13193 AMP-binding enzyme C-terminal domain H5404_23235 PF01220 Dehydroquinase class II H5404_23240 PF00364 Biotin-requiring enzyme H5404_23245 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain H5404_23245 PF00289 Biotin carboxylase, N-terminal domain H5404_23245 PF02785 Biotin carboxylase C-terminal domain H5404_23255 PF01207 Dihydrouridine synthase (Dus) H5404_23260 PF02954 Bacterial regulatory protein, Fis family H5404_23265 PF07690 Major Facilitator Superfamily H5404_23275 PF00990 Diguanylate cyclase, GGDEF domain H5404_23275 PF05230 MASE2 domain H5404_23280 PF13358 DDE superfamily endonuclease H5404_23340 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain H5404_23340 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain H5404_23340 PF01276 Orn/Lys/Arg decarboxylase, major domain H5404_23345 PF13520 Amino acid permease H5404_23350 PF18500 CadC C-terminal domain 1 H5404_23350 PF00486 Transcriptional regulatory protein, C terminal H5404_23355 PF13411 MerR HTH family regulatory protein H5404_23360 PF01808 AICARFT/IMPCHase bienzyme H5404_23360 PF02142 MGS-like domain H5404_23365 PF02843 Phosphoribosylglycinamide synthetase, C domain H5404_23365 PF02844 Phosphoribosylglycinamide synthetase, N domain H5404_23365 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain H5404_23375 PF00216 Bacterial DNA-binding protein H5404_23380 PF01595 Cyclin M transmembrane N-terminal domain H5404_23380 PF00571 CBS domain H5404_23385 PF04222 Protein of unknown function (DUF416) H5404_23390 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain H5404_23395 PF03167 Uracil DNA glycosylase superfamily H5404_23400 PF01208 Uroporphyrinogen decarboxylase (URO-D) H5404_23415 PF00293 NUDIX domain H5404_23415 PF09297 NADH pyrophosphatase zinc ribbon domain H5404_23420 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ H5404_23425 PF04997 RNA polymerase Rpb1, domain 1 H5404_23425 PF04998 RNA polymerase Rpb1, domain 5 H5404_23425 PF00623 RNA polymerase Rpb1, domain 2 H5404_23425 PF05000 RNA polymerase Rpb1, domain 4 H5404_23425 PF04983 RNA polymerase Rpb1, domain 3 H5404_23430 PF04560 RNA polymerase Rpb2, domain 7 H5404_23430 PF04561 RNA polymerase Rpb2, domain 2 H5404_23430 PF00562 RNA polymerase Rpb2, domain 6 H5404_23430 PF04563 RNA polymerase beta subunit H5404_23430 PF04565 RNA polymerase Rpb2, domain 3 H5404_23430 PF10385 RNA polymerase beta subunit external 1 domain H5404_23435 PF16320 Ribosomal protein L7/L12 dimerisation domain H5404_23435 PF00542 Ribosomal protein L7/L12 C-terminal domain H5404_23440 PF00466 Ribosomal protein L10 H5404_23445 PF00687 Ribosomal protein L1p/L10e family H5404_23450 PF00298 Ribosomal protein L11, RNA binding domain H5404_23450 PF03946 Ribosomal protein L11, N-terminal domain H5404_23455 PF00467 KOW motif H5404_23455 PF02357 Transcription termination factor nusG H5404_23460 PF00584 SecE/Sec61-gamma subunits of protein translocation complex H5404_23465 PF00009 Elongation factor Tu GTP binding domain H5404_23465 PF03143 Elongation factor Tu C-terminal domain H5404_23465 PF03144 Elongation factor Tu domain 2 H5404_23490 PF00485 Phosphoribulokinase / Uridine kinase family H5404_23495 PF08279 HTH domain H5404_23495 PF03099 Biotin/lipoate A/B protein ligase family H5404_23495 PF02237 Biotin protein ligase C terminal domain H5404_23500 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain H5404_23500 PF01565 FAD binding domain H5404_23510 PF13091 PLD-like domain H5404_23545 PF01177 Asp/Glu/Hydantoin racemase H5404_23555 PF00593 TonB dependent receptor H5404_23555 PF07715 TonB-dependent Receptor Plug Domain H5404_23560 PF05958 tRNA (Uracil-5-)-methyltransferase H5404_23570 PF00440 Bacterial regulatory proteins, tetR family H5404_23575 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain H5404_23575 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5404_23580 PF01554 MatE H5404_23585 PF04072 Leucine carboxyl methyltransferase H5404_23590 PF01726 LexA DNA binding domain H5404_23590 PF00717 Peptidase S24-like H5404_23595 PF01553 Acyltransferase H5404_23600 PF01040 UbiA prenyltransferase family H5404_23605 PF04345 Chorismate lyase H5404_23610 PF03748 Flagellar basal body-associated protein FliL H5404_23615 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease H5404_23615 PF01694 Rhomboid family H5404_23620 PF00581 Rhodanese-like domain H5404_23625 PF00140 Sigma-70 factor, region 1.2 H5404_23625 PF04542 Sigma-70 region 2 H5404_23625 PF04545 Sigma-70, region 4 H5404_23630 PF18075 FtsX extracellular domain H5404_23635 PF00005 ABC transporter H5404_23640 PF00448 SRP54-type protein, GTPase domain H5404_23640 PF02881 SRP54-type protein, helical bundle domain H5404_23655 PF01914 MarC family integral membrane protein H5404_23705 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain H5404_23705 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain H5404_23710 PF01022 Bacterial regulatory protein, arsR family H5404_23715 PF00563 EAL domain H5404_23715 PF08668 HDOD domain H5404_23720 PF01810 LysE type translocator H5404_23725 PF12146 Serine aminopeptidase, S33 H5404_23745 PF03942 DTW domain H5404_23750 PF00563 EAL domain H5404_23750 PF10442 FIST C domain H5404_23750 PF00990 Diguanylate cyclase, GGDEF domain H5404_23750 PF08495 FIST N domain H5404_23755 PF13419 Haloacid dehalogenase-like hydrolase H5404_23760 PF00589 Phage integrase family H5404_23760 PF02899 Phage integrase, N-terminal SAM-like domain H5404_23770 PF01678 Diaminopimelate epimerase H5404_23775 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain H5404_23775 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain H5404_23785 PF01491 Frataxin-like domain H5404_23790 PF01295 Adenylate cyclase, class-I H5404_23790 PF12633 Adenylate cyclase NT domain H5404_23795 PF03900 Porphobilinogen deaminase, C-terminal domain H5404_23795 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain H5404_23800 PF02602 Uroporphyrinogen-III synthase HemD H5404_23805 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase H5404_23810 PF07219 HemY protein N-terminus H5404_23850 PF00175 Oxidoreductase NAD-binding domain H5404_23855 PF00111 2Fe-2S iron-sulfur cluster binding domain H5404_23860 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase H5404_23870 PF07497 Rho termination factor, RNA-binding domain H5404_23870 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain H5404_23870 PF07498 Rho termination factor, N-terminal domain H5404_23875 PF00085 Thioredoxin H5404_23880 PF00270 DEAD/DEAH box helicase H5404_23880 PF00271 Helicase conserved C-terminal domain H5404_23885 PF02541 Ppx/GppA phosphatase family H5404_23890 PF02592 Putative vitamin uptake transporter H5404_23900 PF00271 Helicase conserved C-terminal domain H5404_23900 PF00570 HRDC domain H5404_23900 PF09382 RQC domain H5404_23900 PF00270 DEAD/DEAH box helicase H5404_23900 PF16124 RecQ zinc-binding H5404_23905 PF00892 EamA-like transporter family H5404_23915 PF01810 LysE type translocator H5404_23925 PF00580 UvrD/REP helicase N-terminal domain H5404_23925 PF13361 UvrD-like helicase C-terminal domain H5404_23935 PF05114 Protein of unknown function (DUF692) H5404_23955 PF07690 Major Facilitator Superfamily H5404_23960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_23960 PF03466 LysR substrate binding domain H5404_23965 PF01321 Creatinase/Prolidase N-terminal domain H5404_23965 PF00557 Metallopeptidase family M24 H5404_23965 PF01321 Creatinase/Prolidase N-terminal domain H5404_23965 PF00557 Metallopeptidase family M24 H5404_23970 PF04055 Radical SAM superfamily H5404_23970 PF06968 Biotin and Thiamin Synthesis associated domain H5404_23975 PF05690 Thiazole biosynthesis protein ThiG H5404_23980 PF02597 ThiS family H5404_23985 PF00899 ThiF family H5404_23990 PF02581 Thiamine monophosphate synthase H5404_23995 PF13667 ThiC-associated domain H5404_23995 PF01964 Radical SAM ThiC family H5404_24000 PF02537 CrcB-like protein, Camphor Resistance (CrcB) H5404_24015 PF13358 DDE superfamily endonuclease H5404_24055 PF00132 Bacterial transferase hexapeptide (six repeats) H5404_24060 PF07369 Protein of unknown function (DUF1488) H5404_24065 PF08501 Shikimate dehydrogenase substrate binding domain H5404_24065 PF18317 Shikimate 5'-dehydrogenase C-terminal domain H5404_24065 PF01488 Shikimate / quinate 5-dehydrogenase H5404_24070 PF01218 Coproporphyrinogen III oxidase H5404_24075 PF01300 Telomere recombination H5404_24080 PF00731 AIR carboxylase H5404_24085 PF02222 ATP-grasp domain H5404_24085 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain H5404_24090 PF01396 Topoisomerase DNA binding C4 zinc finger H5404_24095 PF04361 Protein of unknown function (DUF494) H5404_24100 PF02481 DNA recombination-mediator protein A H5404_24100 PF17782 DprA winged helix domain H5404_24110 PF01327 Polypeptide deformylase H5404_24115 PF00551 Formyl transferase H5404_24115 PF02911 Formyl transferase, C-terminal domain H5404_24120 PF01029 NusB family H5404_24120 PF01189 16S rRNA methyltransferase RsmB/F H5404_24125 PF02254 TrkA-N domain H5404_24125 PF02080 TrkA-C domain H5404_24130 PF02386 Cation transport protein H5404_24140 PF03006 Haemolysin-III related H5404_24145 PF07070 SpoOM protein H5404_24155 PF06288 Protein of unknown function (DUF1040) H5404_24160 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase H5404_24160 PF13746 4Fe-4S dicluster domain H5404_24160 PF12801 4Fe-4S binding domain H5404_24165 PF01636 Phosphotransferase enzyme family H5404_24170 PF01323 DSBA-like thioredoxin domain H5404_24175 PF01553 Acyltransferase H5404_24215 PF03781 Sulfatase-modifying factor enzyme 1 H5404_24230 PF04717 Type VI secretion system, phage-baseplate injector H5404_24245 PF02954 Bacterial regulatory protein, Fis family H5404_24250 PF13289 SIR2-like domain H5404_24255 PF00589 Phage integrase family H5404_24255 PF02899 Phage integrase, N-terminal SAM-like domain H5404_24305 PF00239 Resolvase, N terminal domain H5404_24305 PF02796 Helix-turn-helix domain of resolvase H5404_24310 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain H5404_24310 PF00205 Thiamine pyrophosphate enzyme, central domain H5404_24310 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain H5404_24320 PF01063 Amino-transferase class IV H5404_24325 PF00920 Dehydratase family H5404_24330 PF00585 C-terminal regulatory domain of Threonine dehydratase H5404_24330 PF00291 Pyridoxal-phosphate dependent enzyme H5404_24335 PF03466 LysR substrate binding domain H5404_24335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_24340 PF07690 Major Facilitator Superfamily H5404_24345 PF00497 Bacterial extracellular solute-binding proteins, family 3 H5404_24350 PF00528 Binding-protein-dependent transport system inner membrane component H5404_24355 PF00132 Bacterial transferase hexapeptide (six repeats) H5404_24355 PF12804 MobA-like NTP transferase domain H5404_24360 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain H5404_24360 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain H5404_24365 PF02874 ATP synthase alpha/beta family, beta-barrel domain H5404_24365 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain H5404_24370 PF00231 ATP synthase H5404_24375 PF02874 ATP synthase alpha/beta family, beta-barrel domain H5404_24375 PF00306 ATP synthase alpha/beta chain, C terminal domain H5404_24375 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain H5404_24380 PF00213 ATP synthase delta (OSCP) subunit H5404_24385 PF00430 ATP synthase B/B' CF(0) H5404_24390 PF00137 ATP synthase subunit C H5404_24395 PF00119 ATP synthase A chain H5404_24400 PF03899 ATP synthase I chain H5404_24405 PF02195 ParB-like nuclease domain H5404_24405 PF17762 HTH domain found in ParB protein H5404_24410 PF13614 AAA domain H5404_24415 PF02527 rRNA small subunit methyltransferase G H5404_24420 PF01134 Glucose inhibited division protein A H5404_24420 PF13932 GidA associated domain H5404_24425 PF00258 Flavodoxin H5404_24430 PF10396 GTP-binding protein TrmE N-terminus H5404_24430 PF12631 MnmE helical domain H5404_24430 PF01926 50S ribosome-binding GTPase H5404_24435 PF02096 60Kd inner membrane protein H5404_24435 PF14849 YidC periplasmic domain H5404_24440 PF01809 Putative membrane protein insertion efficiency factor H5404_24445 PF00825 Ribonuclease P H5404_24450 PF00468 Ribosomal protein L34 H5404_24455 PF00005 ABC transporter H5404_24460 PF00528 Binding-protein-dependent transport system inner membrane component H5404_24465 PF00497 Bacterial extracellular solute-binding proteins, family 3 H5404_24510 PF01381 Helix-turn-helix H5404_24515 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB H5404_24520 PF17358 Family of unknown function (DUF5384) H5404_24535 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) H5404_24545 PF00194 Eukaryotic-type carbonic anhydrase H5404_24590 PF04002 RadC-like JAB domain H5404_24690 PF04245 37-kD nucleoid-associated bacterial protein H5404_24705 PF02954 Bacterial regulatory protein, Fis family H5404_24715 PF00239 Resolvase, N terminal domain H5404_24715 PF02796 Helix-turn-helix domain of resolvase H5404_24725 PF02796 Helix-turn-helix domain of resolvase H5404_24725 PF00239 Resolvase, N terminal domain H5404_24745 PF13610 DDE domain H5404_24755 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system H5404_24760 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system H5404_24775 PF01389 OmpA-like transmembrane domain H5404_24775 PF00691 OmpA family H5404_24780 PF11999 Protein of unknown function (DUF3494) H5404_24780 PF02368 Bacterial Ig-like domain (group 2) H5404_24785 PF00239 Resolvase, N terminal domain H5404_24785 PF02796 Helix-turn-helix domain of resolvase H5404_24795 PF01555 DNA methylase H5404_24815 PF02796 Helix-turn-helix domain of resolvase H5404_24815 PF00239 Resolvase, N terminal domain H5404_24840 PF13700 Domain of unknown function (DUF4158) H5404_24840 PF01526 Tn3 transposase DDE domain H5404_24845 PF00239 Resolvase, N terminal domain H5404_24845 PF02796 Helix-turn-helix domain of resolvase H5404_24855 PF02796 Helix-turn-helix domain of resolvase H5404_24855 PF00239 Resolvase, N terminal domain H5404_24860 PF00816 H-NS histone family H5404_24865 PF11570 Coiled-coil receptor-binding R-domain of colicin E2 H5404_24865 PF03515 Colicin-like bacteriocin tRNase domain H5404_24870 PF01320 Colicin immunity protein / pyocin immunity protein H5404_24895 PF01848 Hok/gef family H5404_24925 PF01131 DNA topoisomerase H5404_24925 PF01751 Toprim domain H5404_24955 PF10881 Protein of unknown function (DUF2726) H5404_25025 PF00437 Type II/IV secretion system protein H5404_25065 PF00216 Bacterial DNA-binding protein H5404_25230 PF00574 Clp protease H5404_25235 PF04860 Phage portal protein H5404_25240 PF03354 Phage Terminase H5404_25365 PF13614 AAA domain H5404_25425 PF13614 AAA domain H5404_25445 PF01526 Tn3 transposase DDE domain H5404_25445 PF13700 Domain of unknown function (DUF4158) H5404_25450 PF00239 Resolvase, N terminal domain H5404_25450 PF02796 Helix-turn-helix domain of resolvase H5404_25495 PF00691 OmpA family H5404_25535 PF01797 Transposase IS200 like H5404_25550 PF14706 Transposase DNA-binding H5404_25550 PF01609 Transposase DDE domain H5404_25550 PF02281 Transposase Tn5 dimerisation domain H5404_25575 PF02796 Helix-turn-helix domain of resolvase H5404_25575 PF00239 Resolvase, N terminal domain H5404_25605 PF13362 Toprim domain H5404_25605 PF18818 Metallopeptidase superfamily domain H5404_25605 PF08401 Domain of unknown function (DUF1738) H5404_25615 PF03230 Antirestriction protein H5404_25635 PF01751 Toprim domain H5404_25635 PF01131 DNA topoisomerase H5404_25685 PF01464 Transglycosylase SLT domain H5404_25710 PF01848 Hok/gef family H5404_25750 PF00437 Type II/IV secretion system protein H5404_25775 PF03743 Bacterial conjugation TrbI-like protein H5404_25785 PF03524 Conjugal transfer protein H5404_25805 PF00437 Type II/IV secretion system protein H5404_25815 PF03135 CagE, TrbE, VirB family, component of type IV transporter system H5404_25820 PF05101 Type IV secretory pathway, VirB3-like protein H5404_25825 PF04956 TrbC/VIRB2 family