locus-tag class description VPUCM_0001 PF00258 Flavodoxin VPUCM_0002 PF10396 GTP-binding protein TrmE N-terminus VPUCM_0002 PF01926 50S ribosome-binding GTPase VPUCM_0002 PF12631 MnmE helical domain VPUCM_0003 PF14849 YidC periplasmic domain VPUCM_0003 PF02096 60Kd inner membrane protein VPUCM_0004 PF00825 Ribonuclease P VPUCM_0005 PF00468 Ribosomal protein L34 VPUCM_0006 PF00005 ABC transporter VPUCM_0007 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_0008 PF00497 Bacterial extracellular solute-binding proteins, family 3 VPUCM_0009 PF11638 DnaA N-terminal domain VPUCM_0009 PF08299 Bacterial dnaA protein helix-turn-helix VPUCM_0009 PF00308 Bacterial dnaA protein VPUCM_0010 PF02767 DNA polymerase III beta subunit, central domain VPUCM_0010 PF02768 DNA polymerase III beta subunit, C-terminal domain VPUCM_0010 PF00712 DNA polymerase III beta subunit, N-terminal domain VPUCM_0011 PF02463 RecF/RecN/SMC N terminal domain VPUCM_0012 PF00204 DNA gyrase B VPUCM_0012 PF01751 Toprim domain VPUCM_0012 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_0012 PF00986 DNA gyrase B subunit, carboxyl terminus VPUCM_0012 PF18053 DNA gyrase B subunit insert domain VPUCM_0016 PF00011 Hsp20/alpha crystallin family VPUCM_0017 PF00155 Aminotransferase class I and II VPUCM_0018 PF00128 Alpha amylase, catalytic domain VPUCM_0019 PF02092 Glycyl-tRNA synthetase beta subunit VPUCM_0019 PF05746 DALR anticodon binding domain VPUCM_0020 PF02091 Glycyl-tRNA synthetase alpha subunit VPUCM_0022 PF01169 Uncharacterized protein family UPF0016 VPUCM_0024 PF01206 Sulfurtransferase TusA VPUCM_0026 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_0026 PF03466 LysR substrate binding domain VPUCM_0027 PF08240 Alcohol dehydrogenase GroES-like domain VPUCM_0027 PF00107 Zinc-binding dehydrogenase VPUCM_0028 PF00108 Thiolase, N-terminal domain VPUCM_0028 PF02803 Thiolase, C-terminal domain VPUCM_0029 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VPUCM_0029 PF00378 Enoyl-CoA hydratase/isomerase VPUCM_0029 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VPUCM_0030 PF09186 Domain of unknown function (DUF1949) VPUCM_0030 PF01205 Uncharacterized protein family UPF0029 VPUCM_0031 PF02386 Cation transport protein VPUCM_0032 PF12724 Flavodoxin domain VPUCM_0034 PF03466 LysR substrate binding domain VPUCM_0034 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_0036 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain VPUCM_0036 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain VPUCM_0037 PF04380 Membrane fusogenic activity VPUCM_0038 PF00873 AcrB/AcrD/AcrF family VPUCM_0039 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VPUCM_0040 PF16295 Tetracyclin repressor-like, C-terminal domain VPUCM_0040 PF00440 Bacterial regulatory proteins, tetR family VPUCM_0041 PF13361 UvrD-like helicase C-terminal domain VPUCM_0041 PF00580 UvrD/REP helicase N-terminal domain VPUCM_0042 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VPUCM_0044 PF13419 Haloacid dehalogenase-like hydrolase VPUCM_0045 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VPUCM_0045 PF00005 ABC transporter VPUCM_0046 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VPUCM_0048 PF12911 N-terminal TM domain of oligopeptide transport permease C VPUCM_0048 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_0054 PF00069 Protein kinase domain VPUCM_0055 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VPUCM_0055 PF00356 Bacterial regulatory proteins, lacI family VPUCM_0056 PF03466 LysR substrate binding domain VPUCM_0056 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_0057 PF00893 Small Multidrug Resistance protein VPUCM_0058 PF00893 Small Multidrug Resistance protein VPUCM_0059 PF00920 Dehydratase family VPUCM_0060 PF01202 Shikimate kinase VPUCM_0061 PF02447 GntP family permease VPUCM_0062 PF01081 KDPG and KHG aldolase VPUCM_0063 PF01048 Phosphorylase superfamily VPUCM_0064 PF03466 LysR substrate binding domain VPUCM_0064 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_0065 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VPUCM_0065 PF07992 Pyridine nucleotide-disulphide oxidoreductase VPUCM_0066 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ VPUCM_0067 PF01432 Peptidase family M3 VPUCM_0068 PF01037 Lrp/AsnC ligand binding domain VPUCM_0069 PF04445 Putative SAM-dependent methyltransferase VPUCM_0071 PF00892 EamA-like transporter family VPUCM_0072 PF00582 Universal stress protein family VPUCM_0073 PF00210 Ferritin-like domain VPUCM_0074 PF10625 Universal stress protein B (UspB) VPUCM_0076 PF01590 GAF domain VPUCM_0076 PF02954 Bacterial regulatory protein, Fis family VPUCM_0076 PF00158 Sigma-54 interaction domain VPUCM_0077 PF04972 BON domain VPUCM_0081 PF00781 Diacylglycerol kinase catalytic domain VPUCM_0087 PF01594 AI-2E family transporter VPUCM_0088 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_0088 PF00563 EAL domain VPUCM_0088 PF03707 Bacterial signalling protein N terminal repeat VPUCM_0090 PF02646 RmuC family VPUCM_0091 PF01209 ubiE/COQ5 methyltransferase family VPUCM_0092 PF02036 SCP-2 sterol transfer family VPUCM_0093 PF03109 ABC1 family VPUCM_0094 PF02416 mttA/Hcf106 family VPUCM_0095 PF02416 mttA/Hcf106 family VPUCM_0096 PF00902 Sec-independent protein translocase protein (TatC) VPUCM_0098 PF01026 TatD related DNase VPUCM_0099 PF00490 Delta-aminolevulinic acid dehydratase VPUCM_0101 PF01367 5'-3' exonuclease, C-terminal SAM fold VPUCM_0101 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VPUCM_0101 PF00476 DNA polymerase family A VPUCM_0101 PF01612 3'-5' exonuclease VPUCM_0102 PF01926 50S ribosome-binding GTPase VPUCM_0103 PF00034 Cytochrome c VPUCM_0107 PF04220 Der GTPase activator (YihI) VPUCM_0108 PF10675 Protein of unknown function (DUF2489) VPUCM_0109 PF04055 Radical SAM superfamily VPUCM_0109 PF06969 HemN C-terminal domain VPUCM_0110 PF00962 Adenosine/AMP deaminase VPUCM_0111 PF03707 Bacterial signalling protein N terminal repeat VPUCM_0111 PF00563 EAL domain VPUCM_0111 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_0112 PF02954 Bacterial regulatory protein, Fis family VPUCM_0112 PF00158 Sigma-54 interaction domain VPUCM_0112 PF00072 Response regulator receiver domain VPUCM_0113 PF00989 PAS fold VPUCM_0113 PF00512 His Kinase A (phospho-acceptor) domain VPUCM_0113 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_0115 PF00120 Glutamine synthetase, catalytic domain VPUCM_0115 PF03951 Glutamine synthetase, beta-Grasp domain VPUCM_0120 PF03631 Virulence factor BrkB VPUCM_0121 PF02580 D-Tyr-tRNA(Tyr) deacylase VPUCM_0122 PF00583 Acetyltransferase (GNAT) family VPUCM_0122 PF09500 Putative thioesterase (yiiD_Cterm) VPUCM_0124 PF01293 Phosphoenolpyruvate carboxykinase VPUCM_0125 PF01430 Hsp33 protein VPUCM_0126 PF01479 S4 domain VPUCM_0127 PF11356 Type II secretion system protein C VPUCM_0128 PF00263 Bacterial type II and III secretion system protein VPUCM_0128 PF03958 Bacterial type II/III secretion system short domain VPUCM_0129 PF00437 Type II/IV secretion system protein VPUCM_0130 PF00482 Type II secretion system (T2SS), protein F VPUCM_0131 PF08334 Type II secretion system (T2SS), protein G VPUCM_0131 PF07963 Prokaryotic N-terminal methylation motif VPUCM_0132 PF12019 Type II transport protein GspH VPUCM_0133 PF07963 Prokaryotic N-terminal methylation motif VPUCM_0133 PF02501 Type II secretion system (T2SS), protein I VPUCM_0134 PF07963 Prokaryotic N-terminal methylation motif VPUCM_0134 PF11612 Type II secretion system (T2SS), protein J VPUCM_0135 PF03934 Type II secretion system (T2SS), protein K VPUCM_0136 PF05134 Type II secretion system (T2SS), protein L VPUCM_0136 PF12693 GspL periplasmic domain VPUCM_0137 PF04612 Type II secretion system (T2SS), protein M VPUCM_0138 PF01203 Type II secretion system (T2SS), protein N VPUCM_0139 PF00459 Inositol monophosphatase family VPUCM_0140 PF00293 NUDIX domain VPUCM_0141 PF01521 Iron-sulphur cluster biosynthesis VPUCM_0141 PF01106 NifU-like domain VPUCM_0142 PF00156 Phosphoribosyl transferase domain VPUCM_0143 PF00561 alpha/beta hydrolase fold VPUCM_0145 PF17674 HHH domain VPUCM_0145 PF09371 Tex-like protein N-terminal domain VPUCM_0145 PF16921 Tex protein YqgF-like domain VPUCM_0145 PF00575 S1 RNA binding domain VPUCM_0147 PF01272 Transcription elongation factor, GreA/GreB, C-term VPUCM_0147 PF03449 Transcription elongation factor, N-terminal VPUCM_0149 PF00072 Response regulator receiver domain VPUCM_0149 PF00486 Transcriptional regulatory protein, C terminal VPUCM_0150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_0150 PF00512 His Kinase A (phospho-acceptor) domain VPUCM_0150 PF00672 HAMP domain VPUCM_0151 PF00860 Permease family VPUCM_0153 PF00270 DEAD/DEAH box helicase VPUCM_0153 PF17191 RecG wedge domain VPUCM_0153 PF00271 Helicase conserved C-terminal domain VPUCM_0154 PF00588 SpoU rRNA Methylase family VPUCM_0154 PF12105 SpoU, rRNA methylase, C-terminal VPUCM_0155 PF13291 ACT domain VPUCM_0155 PF02824 TGS domain VPUCM_0155 PF04607 Region found in RelA / SpoT proteins VPUCM_0156 PF01192 RNA polymerase Rpb6 VPUCM_0157 PF00625 Guanylate kinase VPUCM_0160 PF02472 Biopolymer transport protein ExbD/TolR VPUCM_0161 PF01618 MotA/TolQ/ExbB proton channel family VPUCM_0164 PF07715 TonB-dependent Receptor Plug Domain VPUCM_0164 PF00593 TonB dependent receptor VPUCM_0165 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_0166 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_0166 PF12911 N-terminal TM domain of oligopeptide transport permease C VPUCM_0167 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VPUCM_0168 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VPUCM_0168 PF00005 ABC transporter VPUCM_0169 PF00005 ABC transporter VPUCM_0169 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VPUCM_0176 PF00700 Bacterial flagellin C-terminal helical region VPUCM_0176 PF00669 Bacterial flagellin N-terminal helical region VPUCM_0176 PF07196 Flagellin hook IN motif VPUCM_0178 PF08340 Domain of unknown function (DUF1732) VPUCM_0178 PF03755 YicC-like family, N-terminal region VPUCM_0179 PF03725 3' exoribonuclease family, domain 2 VPUCM_0179 PF01138 3' exoribonuclease family, domain 1 VPUCM_0180 PF00156 Phosphoribosyl transferase domain VPUCM_0181 PF03279 Bacterial lipid A biosynthesis acyltransferase VPUCM_0182 PF00440 Bacterial regulatory proteins, tetR family VPUCM_0183 PF02441 Flavoprotein VPUCM_0183 PF04127 DNA / pantothenate metabolism flavoprotein VPUCM_0184 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPUCM_0184 PF17200 Single Cache domain 2 VPUCM_0184 PF00672 HAMP domain VPUCM_0185 PF04002 RadC-like JAB domain VPUCM_0186 PF00830 Ribosomal L28 family VPUCM_0187 PF00471 Ribosomal protein L33 VPUCM_0189 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain VPUCM_0189 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain VPUCM_0189 PF06827 Zinc finger found in FPG and IleRS VPUCM_0191 PF01467 Cytidylyltransferase-like VPUCM_0192 PF00534 Glycosyl transferases group 1 VPUCM_0193 PF00535 Glycosyl transferase family 2 VPUCM_0194 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VPUCM_0195 PF01219 Prokaryotic diacylglycerol kinase VPUCM_0197 PF00884 Sulfatase VPUCM_0197 PF11893 Domain of unknown function (DUF3413) VPUCM_0200 PF02719 Polysaccharide biosynthesis protein VPUCM_0201 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VPUCM_0202 PF02350 UDP-N-acetylglucosamine 2-epimerase VPUCM_0203 PF08666 SAF domain VPUCM_0203 PF03102 NeuB family VPUCM_0205 PF00483 Nucleotidyl transferase VPUCM_0206 PF02348 Cytidylyltransferase VPUCM_0208 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VPUCM_0209 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VPUCM_0210 PF03279 Bacterial lipid A biosynthesis acyltransferase VPUCM_0211 PF01370 NAD dependent epimerase/dehydratase family VPUCM_0212 PF06082 Exopolysaccharide biosynthesis protein YbjH VPUCM_0214 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF VPUCM_0216 PF00953 Glycosyl transferase family 4 VPUCM_0217 PF00009 Elongation factor Tu GTP binding domain VPUCM_0220 PF01507 Phosphoadenosine phosphosulfate reductase family VPUCM_0222 PF07963 Prokaryotic N-terminal methylation motif VPUCM_0222 PF08334 Type II secretion system (T2SS), protein G VPUCM_0223 PF00437 Type II/IV secretion system protein VPUCM_0223 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VPUCM_0224 PF00482 Type II secretion system (T2SS), protein F VPUCM_0228 PF03934 Type II secretion system (T2SS), protein K VPUCM_0232 PF03958 Bacterial type II/III secretion system short domain VPUCM_0232 PF00263 Bacterial type II and III secretion system protein VPUCM_0234 PF00953 Glycosyl transferase family 4 VPUCM_0236 PF10531 SLBB domain VPUCM_0236 PF02563 Polysaccharide biosynthesis/export protein VPUCM_0237 PF01061 ABC-2 type transporter VPUCM_0238 PF00005 ABC transporter VPUCM_0240 PF00483 Nucleotidyl transferase VPUCM_0241 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase VPUCM_0242 PF04321 RmlD substrate binding domain VPUCM_0243 PF16363 GDP-mannose 4,6 dehydratase VPUCM_0248 PF00793 DAHP synthetase I family VPUCM_0249 PF02348 Cytidylyltransferase VPUCM_0250 PF01380 SIS domain VPUCM_0250 PF00571 CBS domain VPUCM_0251 PF00535 Glycosyl transferase family 2 VPUCM_0257 PF02080 TrkA-C domain VPUCM_0257 PF03600 Citrate transporter VPUCM_0259 PF00535 Glycosyl transferase family 2 VPUCM_0262 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VPUCM_0262 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VPUCM_0262 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VPUCM_0263 PF00483 Nucleotidyl transferase VPUCM_0264 PF00121 Triosephosphate isomerase VPUCM_0269 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded VPUCM_0272 PF06005 Cell division protein ZapB VPUCM_0273 PF03737 Aldolase/RraA VPUCM_0274 PF01040 UbiA prenyltransferase family VPUCM_0275 PF00004 ATPase family associated with various cellular activities (AAA) VPUCM_0275 PF07724 AAA domain (Cdc48 subfamily) VPUCM_0276 PF00227 Proteasome subunit VPUCM_0278 PF00356 Bacterial regulatory proteins, lacI family VPUCM_0279 PF00271 Helicase conserved C-terminal domain VPUCM_0279 PF18074 Primosomal protein N C-terminal domain VPUCM_0279 PF18319 PriA DNA helicase Cys-rich region (CRR) domain VPUCM_0279 PF17764 3′ DNA-binding domain (3′BD) VPUCM_0279 PF00270 DEAD/DEAH box helicase VPUCM_0280 PF01197 Ribosomal protein L31 VPUCM_0281 PF00338 Ribosomal protein S10p/S20e VPUCM_0282 PF00297 Ribosomal protein L3 VPUCM_0283 PF00573 Ribosomal protein L4/L1 family VPUCM_0284 PF00276 Ribosomal protein L23 VPUCM_0285 PF03947 Ribosomal Proteins L2, C-terminal domain VPUCM_0285 PF00181 Ribosomal Proteins L2, RNA binding domain VPUCM_0286 PF00203 Ribosomal protein S19 VPUCM_0287 PF00237 Ribosomal protein L22p/L17e VPUCM_0288 PF00189 Ribosomal protein S3, C-terminal domain VPUCM_0288 PF07650 KH domain VPUCM_0289 PF00252 Ribosomal protein L16p/L10e VPUCM_0290 PF00831 Ribosomal L29 protein VPUCM_0291 PF00366 Ribosomal protein S17 VPUCM_0292 PF00238 Ribosomal protein L14p/L23e VPUCM_0293 PF00467 KOW motif VPUCM_0293 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 VPUCM_0294 PF00673 ribosomal L5P family C-terminus VPUCM_0294 PF00281 Ribosomal protein L5 VPUCM_0295 PF00253 Ribosomal protein S14p/S29e VPUCM_0296 PF00410 Ribosomal protein S8 VPUCM_0297 PF00347 Ribosomal protein L6 VPUCM_0298 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast VPUCM_0299 PF00333 Ribosomal protein S5, N-terminal domain VPUCM_0299 PF03719 Ribosomal protein S5, C-terminal domain VPUCM_0300 PF00327 Ribosomal protein L30p/L7e VPUCM_0301 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A VPUCM_0302 PF00344 SecY translocase VPUCM_0303 PF00444 Ribosomal protein L36 VPUCM_0304 PF00416 Ribosomal protein S13/S18 VPUCM_0305 PF00411 Ribosomal protein S11 VPUCM_0306 PF01479 S4 domain VPUCM_0306 PF00163 Ribosomal protein S4/S9 N-terminal domain VPUCM_0307 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain VPUCM_0307 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain VPUCM_0307 PF01000 RNA polymerase Rpb3/RpoA insert domain VPUCM_0308 PF01196 Ribosomal protein L17 VPUCM_0310 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VPUCM_0310 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VPUCM_0313 PF13673 Acetyltransferase (GNAT) domain VPUCM_0314 PF00270 DEAD/DEAH box helicase VPUCM_0314 PF03880 DbpA RNA binding domain VPUCM_0314 PF00271 Helicase conserved C-terminal domain VPUCM_0316 PF02872 5'-nucleotidase, C-terminal domain VPUCM_0316 PF00149 Calcineurin-like phosphoesterase VPUCM_0317 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VPUCM_0317 PF14824 Sirohaem biosynthesis protein central VPUCM_0317 PF10414 Sirohaem synthase dimerisation region VPUCM_0318 PF01507 Phosphoadenosine phosphosulfate reductase family VPUCM_0319 PF00009 Elongation factor Tu GTP binding domain VPUCM_0320 PF02080 TrkA-C domain VPUCM_0320 PF03600 Citrate transporter VPUCM_0325 PF00005 ABC transporter VPUCM_0328 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VPUCM_0329 PF06526 Protein of unknown function (DUF1107) VPUCM_0330 PF01625 Peptide methionine sulfoxide reductase VPUCM_0331 PF17243 POTRA domain TamA domain 1 VPUCM_0331 PF01103 Surface antigen VPUCM_0332 PF04357 TamB, inner membrane protein subunit of TAM complex VPUCM_0333 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like VPUCM_0335 PF00719 Inorganic pyrophosphatase VPUCM_0336 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain VPUCM_0337 PF08245 Mur ligase middle domain VPUCM_0337 PF02875 Mur ligase family, glutamate ligase domain VPUCM_0337 PF01225 Mur ligase family, catalytic domain VPUCM_0338 PF02441 Flavoprotein VPUCM_0340 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_0341 PF00005 ABC transporter VPUCM_0345 PF16868 NMT1-like family VPUCM_0346 PF01316 Arginine repressor, DNA binding domain VPUCM_0346 PF02863 Arginine repressor, C-terminal domain VPUCM_0347 PF00056 lactate/malate dehydrogenase, NAD binding domain VPUCM_0347 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VPUCM_0349 PF00348 Polyprenyl synthetase VPUCM_0350 PF00829 Ribosomal prokaryotic L21 protein VPUCM_0351 PF01016 Ribosomal L27 protein VPUCM_0352 PF01018 GTP1/OBG VPUCM_0352 PF01926 50S ribosome-binding GTPase VPUCM_0353 PF06738 Putative threonine/serine exporter VPUCM_0354 PF12821 Threonine/Serine exporter, ThrE VPUCM_0355 PF00186 Dihydrofolate reductase VPUCM_0356 PF00149 Calcineurin-like phosphoesterase VPUCM_0357 PF04379 ApaG domain VPUCM_0358 PF00398 Ribosomal RNA adenine dimethylase VPUCM_0359 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VPUCM_0360 PF09312 SurA N-terminal domain VPUCM_0361 PF04453 LPS transport system D VPUCM_0361 PF03968 OstA-like protein VPUCM_0362 PF00226 DnaJ domain VPUCM_0362 PF05099 Tellurite resistance protein TerB VPUCM_0364 PF00694 Aconitase C-terminal domain VPUCM_0365 PF00330 Aconitase family (aconitate hydratase) VPUCM_0366 PF00180 Isocitrate/isopropylmalate dehydrogenase VPUCM_0367 PF08502 LeuA allosteric (dimerisation) domain VPUCM_0367 PF00682 HMGL-like VPUCM_0369 PF01569 PAP2 superfamily VPUCM_0371 PF03466 LysR substrate binding domain VPUCM_0371 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_0372 PF00501 AMP-binding enzyme VPUCM_0373 PF00205 Thiamine pyrophosphate enzyme, central domain VPUCM_0373 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VPUCM_0373 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VPUCM_0374 PF10369 Small subunit of acetolactate synthase VPUCM_0375 PF07694 5TMR of 5TMR-LYT VPUCM_0375 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_0377 PF02887 Pyruvate kinase, alpha/beta domain VPUCM_0377 PF00224 Pyruvate kinase, barrel domain VPUCM_0378 PF00455 DeoR C terminal sensor domain VPUCM_0378 PF08220 DeoR-like helix-turn-helix domain VPUCM_0379 PF01380 SIS domain VPUCM_0381 PF00486 Transcriptional regulatory protein, C terminal VPUCM_0381 PF00072 Response regulator receiver domain VPUCM_0382 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_0382 PF00672 HAMP domain VPUCM_0382 PF00512 His Kinase A (phospho-acceptor) domain VPUCM_0383 PF00465 Iron-containing alcohol dehydrogenase VPUCM_0384 PF02733 Dak1 domain VPUCM_0385 PF02734 DAK2 domain VPUCM_0386 PF05524 PEP-utilising enzyme, N-terminal VPUCM_0386 PF02896 PEP-utilising enzyme, TIM barrel domain VPUCM_0386 PF00391 PEP-utilising enzyme, mobile domain VPUCM_0387 PF02954 Bacterial regulatory protein, Fis family VPUCM_0387 PF00158 Sigma-54 interaction domain VPUCM_0387 PF00989 PAS fold VPUCM_0388 PF05068 Mannitol repressor VPUCM_0389 PF01232 Mannitol dehydrogenase Rossmann domain VPUCM_0389 PF08125 Mannitol dehydrogenase C-terminal domain VPUCM_0390 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VPUCM_0390 PF02378 Phosphotransferase system, EIIC VPUCM_0390 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VPUCM_0397 PF03180 NLPA lipoprotein VPUCM_0398 PF04539 Sigma-70 region 3 VPUCM_0398 PF04542 Sigma-70 region 2 VPUCM_0398 PF00140 Sigma-70 factor, region 1.2 VPUCM_0398 PF04546 Sigma-70, non-essential region VPUCM_0398 PF03979 Sigma-70 factor, region 1.1 VPUCM_0398 PF04545 Sigma-70, region 4 VPUCM_0399 PF08275 DNA primase catalytic core, N-terminal domain VPUCM_0399 PF08278 DNA primase DnaG DnaB-binding VPUCM_0399 PF01807 CHC2 zinc finger VPUCM_0399 PF10410 DnaB-helicase binding domain of primase VPUCM_0400 PF09424 Yqey-like protein VPUCM_0401 PF01165 Ribosomal protein S21 VPUCM_0402 PF00814 Glycoprotease family VPUCM_0403 PF12697 Alpha/beta hydrolase family VPUCM_0404 PF02660 Glycerol-3-phosphate acyltransferase VPUCM_0405 PF02152 Dihydroneopterin aldolase VPUCM_0406 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VPUCM_0407 PF02673 Bacitracin resistance protein BacA VPUCM_0408 PF01743 Poly A polymerase head domain VPUCM_0408 PF01966 HD domain VPUCM_0408 PF12627 Probable RNA and SrmB- binding site of polymerase A VPUCM_0409 PF01471 Putative peptidoglycan binding domain VPUCM_0409 PF13401 AAA domain VPUCM_0411 PF08239 Bacterial SH3 domain VPUCM_0412 PF01384 Phosphate transporter family VPUCM_0413 PF01865 Protein of unknown function DUF47 VPUCM_0414 PF01928 CYTH domain VPUCM_0416 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPUCM_0416 PF00672 HAMP domain VPUCM_0417 PF08335 GlnD PII-uridylyltransferase VPUCM_0417 PF03710 Glutamate-ammonia ligase adenylyltransferase VPUCM_0418 PF01467 Cytidylyltransferase-like VPUCM_0418 PF00294 pfkB family carbohydrate kinase VPUCM_0420 PF02321 Outer membrane efflux protein VPUCM_0421 PF00293 NUDIX domain VPUCM_0422 PF06853 Protein of unknown function (DUF1249) VPUCM_0423 PF00149 Calcineurin-like phosphoesterase VPUCM_0424 PF05728 Uncharacterised protein family (UPF0227) VPUCM_0425 PF00986 DNA gyrase B subunit, carboxyl terminus VPUCM_0425 PF01751 Toprim domain VPUCM_0425 PF00204 DNA gyrase B VPUCM_0425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_0426 PF03989 DNA gyrase C-terminal domain, beta-propeller VPUCM_0426 PF00521 DNA gyrase/topoisomerase IV, subunit A VPUCM_0427 PF13180 PDZ domain VPUCM_0428 PF00595 PDZ domain VPUCM_0429 PF06295 Protein of unknown function (DUF1043) VPUCM_0430 PF03969 AFG1-like ATPase VPUCM_0431 PF00572 Ribosomal protein L13 VPUCM_0432 PF00380 Ribosomal protein S9/S16 VPUCM_0433 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal VPUCM_0433 PF00355 Rieske [2Fe-2S] domain VPUCM_0434 PF00032 Cytochrome b(C-terminal)/b6/petD VPUCM_0434 PF00033 Cytochrome b/b6/petB VPUCM_0435 PF02167 Cytochrome C1 family VPUCM_0436 PF02798 Glutathione S-transferase, N-terminal domain VPUCM_0436 PF00043 Glutathione S-transferase, C-terminal domain VPUCM_0437 PF04386 Stringent starvation protein B VPUCM_0438 PF04972 BON domain VPUCM_0439 PF13580 SIS domain VPUCM_0440 PF02021 Uncharacterised protein family UPF0102 VPUCM_0441 PF04348 LppC putative lipoprotein VPUCM_0442 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VPUCM_0443 PF01795 MraW methylase family VPUCM_0444 PF04999 Cell division protein FtsL VPUCM_0445 PF03717 Penicillin-binding Protein dimerisation domain VPUCM_0445 PF00905 Penicillin binding protein transpeptidase domain VPUCM_0446 PF01225 Mur ligase family, catalytic domain VPUCM_0446 PF02875 Mur ligase family, glutamate ligase domain VPUCM_0446 PF08245 Mur ligase middle domain VPUCM_0447 PF01225 Mur ligase family, catalytic domain VPUCM_0447 PF02875 Mur ligase family, glutamate ligase domain VPUCM_0447 PF08245 Mur ligase middle domain VPUCM_0448 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 VPUCM_0448 PF00953 Glycosyl transferase family 4 VPUCM_0449 PF02875 Mur ligase family, glutamate ligase domain VPUCM_0449 PF08245 Mur ligase middle domain VPUCM_0450 PF01098 Cell cycle protein VPUCM_0451 PF04101 Glycosyltransferase family 28 C-terminal domain VPUCM_0451 PF03033 Glycosyltransferase family 28 N-terminal domain VPUCM_0452 PF08245 Mur ligase middle domain VPUCM_0452 PF01225 Mur ligase family, catalytic domain VPUCM_0452 PF02875 Mur ligase family, glutamate ligase domain VPUCM_0453 PF03799 Cell division protein FtsQ VPUCM_0453 PF08478 POTRA domain, FtsQ-type VPUCM_0454 PF02491 SHS2 domain inserted in FTSA VPUCM_0455 PF12327 FtsZ family, C-terminal domain VPUCM_0455 PF00091 Tubulin/FtsZ family, GTPase domain VPUCM_0456 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase VPUCM_0458 PF02810 SEC-C motif VPUCM_0458 PF07517 SecA DEAD-like domain VPUCM_0458 PF07516 SecA Wing and Scaffold domain VPUCM_0458 PF01043 SecA preprotein cross-linking domain VPUCM_0459 PF00293 NUDIX domain VPUCM_0460 PF01113 Dihydrodipicolinate reductase, N-terminus VPUCM_0460 PF05173 Dihydrodipicolinate reductase, C-terminus VPUCM_0461 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VPUCM_0461 PF00117 Glutamine amidotransferase class-I VPUCM_0462 PF02142 MGS-like domain VPUCM_0462 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VPUCM_0462 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VPUCM_0464 PF01925 Sulfite exporter TauE/SafE VPUCM_0467 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_0467 PF03466 LysR substrate binding domain VPUCM_0468 PF03458 UPF0126 domain VPUCM_0469 PF01497 Periplasmic binding protein VPUCM_0470 PF17113 Regulatory signalling modulator protein AmpE VPUCM_0470 PF03186 CobD/Cbib protein VPUCM_0471 PF01048 Phosphorylase superfamily VPUCM_0473 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VPUCM_0473 PF07992 Pyridine nucleotide-disulphide oxidoreductase VPUCM_0474 PF04898 Glutamate synthase central domain VPUCM_0474 PF00310 Glutamine amidotransferases class-II VPUCM_0474 PF01645 Conserved region in glutamate synthase VPUCM_0474 PF01493 GXGXG motif VPUCM_0475 PF07992 Pyridine nucleotide-disulphide oxidoreductase VPUCM_0475 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VPUCM_0476 PF00310 Glutamine amidotransferases class-II VPUCM_0476 PF04898 Glutamate synthase central domain VPUCM_0476 PF01645 Conserved region in glutamate synthase VPUCM_0476 PF01493 GXGXG motif VPUCM_0477 PF04055 Radical SAM superfamily VPUCM_0477 PF16199 Radical_SAM C-terminal domain VPUCM_0478 PF01590 GAF domain VPUCM_0478 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_0478 PF00360 Phytochrome region VPUCM_0478 PF00563 EAL domain VPUCM_0479 PF00512 His Kinase A (phospho-acceptor) domain VPUCM_0479 PF00072 Response regulator receiver domain VPUCM_0479 PF00989 PAS fold VPUCM_0479 PF01627 Hpt domain VPUCM_0479 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_0479 PF18415 Histidine kinase receptor ArcB trans-membrane domain VPUCM_0481 PF00486 Transcriptional regulatory protein, C terminal VPUCM_0481 PF00072 Response regulator receiver domain VPUCM_0483 PF03737 Aldolase/RraA VPUCM_0485 PF00696 Amino acid kinase family VPUCM_0485 PF03447 Homoserine dehydrogenase, NAD binding domain VPUCM_0485 PF00742 Homoserine dehydrogenase VPUCM_0485 PF13840 ACT domain VPUCM_0485 PF01842 ACT domain VPUCM_0486 PF08544 GHMP kinases C terminal VPUCM_0486 PF00288 GHMP kinases N terminal domain VPUCM_0487 PF14821 Threonine synthase N terminus VPUCM_0487 PF00291 Pyridoxal-phosphate dependent enzyme VPUCM_0488 PF01228 Glycine radical VPUCM_0489 PF01261 Xylose isomerase-like TIM barrel VPUCM_0491 PF03167 Uracil DNA glycosylase superfamily VPUCM_0494 PF01235 Sodium:alanine symporter family VPUCM_0495 PF03883 Peroxide stress protein YaaA VPUCM_0496 PF00271 Helicase conserved C-terminal domain VPUCM_0496 PF00270 DEAD/DEAH box helicase VPUCM_0497 PF05175 Methyltransferase small domain VPUCM_0498 PF05525 Branched-chain amino acid transport protein VPUCM_0499 PF00258 Flavodoxin VPUCM_0500 PF00589 Phage integrase family VPUCM_0500 PF02899 Phage integrase, N-terminal SAM-like domain VPUCM_0501 PF13098 Thioredoxin-like domain VPUCM_0501 PF10411 Disulfide bond isomerase protein N-terminus VPUCM_0502 PF02272 DHHA1 domain VPUCM_0502 PF17768 RecJ OB domain VPUCM_0502 PF01368 DHH family VPUCM_0503 PF00472 RF-1 domain VPUCM_0503 PF03462 PCRF domain VPUCM_0504 PF00152 tRNA synthetases class II (D, K and N) VPUCM_0504 PF01336 OB-fold nucleic acid binding domain VPUCM_0505 PF00158 Sigma-54 interaction domain VPUCM_0505 PF00072 Response regulator receiver domain VPUCM_0505 PF02954 Bacterial regulatory protein, Fis family VPUCM_0507 PF00248 Aldo/keto reductase family VPUCM_0509 PF02976 DNA mismatch repair enzyme MutH VPUCM_0510 PF00293 NUDIX domain VPUCM_0511 PF02896 PEP-utilising enzyme, TIM barrel domain VPUCM_0511 PF01590 GAF domain VPUCM_0511 PF05524 PEP-utilising enzyme, N-terminal VPUCM_0511 PF00391 PEP-utilising enzyme, mobile domain VPUCM_0512 PF01925 Sulfite exporter TauE/SafE VPUCM_0513 PF01790 Prolipoprotein diacylglyceryl transferase VPUCM_0514 PF00303 Thymidylate synthase VPUCM_0516 PF02690 Na+/Pi-cotransporter VPUCM_0517 PF03466 LysR substrate binding domain VPUCM_0517 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_0518 PF01022 Bacterial regulatory protein, arsR family VPUCM_0519 PF01649 Ribosomal protein S20 VPUCM_0520 PF03023 Lipid II flippase MurJ VPUCM_0521 PF06574 FAD synthetase VPUCM_0521 PF01687 Riboflavin kinase VPUCM_0522 PF06827 Zinc finger found in FPG and IleRS VPUCM_0522 PF00133 tRNA synthetases class I (I, L, M and V) VPUCM_0522 PF08264 Anticodon-binding domain of tRNA VPUCM_0523 PF01252 Signal peptidase (SPase) II VPUCM_0524 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VPUCM_0525 PF02401 LytB protein VPUCM_0526 PF00072 Response regulator receiver domain VPUCM_0526 PF04397 LytTr DNA-binding domain VPUCM_0527 PF06580 Histidine kinase VPUCM_0527 PF07694 5TMR of 5TMR-LYT VPUCM_0528 PF02554 Carbon starvation protein CstA VPUCM_0531 PF13580 SIS domain VPUCM_0532 PF03702 Anhydro-N-acetylmuramic acid kinase VPUCM_0533 PF00933 Glycosyl hydrolase family 3 N terminal domain VPUCM_0534 PF00793 DAHP synthetase I family VPUCM_0535 PF01817 Chorismate mutase type II VPUCM_0535 PF02153 Prephenate dehydrogenase VPUCM_0536 PF04225 Opacity-associated protein A LysM-like domain VPUCM_0536 PF01551 Peptidase family M23 VPUCM_0537 PF07238 PilZ domain VPUCM_0538 PF12848 ABC transporter VPUCM_0538 PF00005 ABC transporter VPUCM_0539 PF01464 Transglycosylase SLT domain VPUCM_0539 PF14718 Soluble lytic murein transglycosylase L domain VPUCM_0540 PF01371 Trp repressor protein VPUCM_0541 PF01931 Protein of unknown function DUF84 VPUCM_0542 PF00800 Prephenate dehydratase VPUCM_0542 PF01817 Chorismate mutase type II VPUCM_0543 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VPUCM_0544 PF01464 Transglycosylase SLT domain VPUCM_0545 PF13525 Outer membrane lipoprotein VPUCM_0546 PF01479 S4 domain VPUCM_0546 PF00849 RNA pseudouridylate synthase VPUCM_0548 PF02861 Clp amino terminal domain, pathogenicity island component VPUCM_0548 PF07724 AAA domain (Cdc48 subfamily) VPUCM_0548 PF00004 ATPase family associated with various cellular activities (AAA) VPUCM_0548 PF17871 AAA lid domain VPUCM_0548 PF10431 C-terminal, D2-small domain, of ClpB protein VPUCM_0551 PF03411 Penicillin-insensitive murein endopeptidase VPUCM_0553 PF00037 4Fe-4S binding domain VPUCM_0555 PF04381 Putative exonuclease, RdgC VPUCM_0556 PF00486 Transcriptional regulatory protein, C terminal VPUCM_0556 PF00072 Response regulator receiver domain VPUCM_0557 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_0557 PF00512 His Kinase A (phospho-acceptor) domain VPUCM_0557 PF00989 PAS fold VPUCM_0557 PF11808 Phosphate regulon sensor protein PhoR VPUCM_0558 PF12849 PBP superfamily domain VPUCM_0559 PF02541 Ppx/GppA phosphatase family VPUCM_0560 PF13089 Polyphosphate kinase N-terminal domain VPUCM_0560 PF13090 Polyphosphate kinase C-terminal domain 2 VPUCM_0560 PF02503 Polyphosphate kinase middle domain VPUCM_0560 PF17941 Polyphosphate kinase C-terminal domain 1 VPUCM_0561 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_0562 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_0563 PF00005 ABC transporter VPUCM_0564 PF01895 PhoU domain VPUCM_0565 PF03976 Polyphosphate kinase 2 (PPK2) VPUCM_0566 PF03932 CutC family VPUCM_0567 PF00578 AhpC/TSA family VPUCM_0567 PF10417 C-terminal domain of 1-Cys peroxiredoxin VPUCM_0568 PF03466 LysR substrate binding domain VPUCM_0568 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_0569 PF01274 Malate synthase VPUCM_0570 PF00463 Isocitrate lyase family VPUCM_0571 PF00571 CBS domain VPUCM_0573 PF02547 Queuosine biosynthesis protein VPUCM_0574 PF01702 Queuine tRNA-ribosyltransferase VPUCM_0575 PF02699 Preprotein translocase subunit VPUCM_0576 PF07549 SecD/SecF GG Motif VPUCM_0576 PF13721 SecD export protein N-terminal TM region VPUCM_0576 PF02355 Protein export membrane protein VPUCM_0577 PF07549 SecD/SecF GG Motif VPUCM_0577 PF02355 Protein export membrane protein VPUCM_0578 PF00459 Inositol monophosphatase family VPUCM_0579 PF00588 SpoU rRNA Methylase family VPUCM_0580 PF02082 Transcriptional regulator VPUCM_0581 PF00266 Aminotransferase class-V VPUCM_0582 PF01592 NifU-like N terminal domain VPUCM_0583 PF01521 Iron-sulphur cluster biosynthesis VPUCM_0584 PF07743 HSCB C-terminal oligomerisation domain VPUCM_0584 PF00226 DnaJ domain VPUCM_0585 PF00012 Hsp70 protein VPUCM_0586 PF00111 2Fe-2S iron-sulfur cluster binding domain VPUCM_0587 PF04384 Iron-sulphur cluster assembly VPUCM_0588 PF00883 Cytosol aminopeptidase family, catalytic domain VPUCM_0588 PF12404 Peptidase VPUCM_0589 PF00334 Nucleoside diphosphate kinase VPUCM_0590 PF04055 Radical SAM superfamily VPUCM_0591 PF13464 Domain of unknown function (DUF4115) VPUCM_0592 PF04551 GcpE protein VPUCM_0593 PF03129 Anticodon binding domain VPUCM_0593 PF13393 Histidyl-tRNA synthetase VPUCM_0594 PF09976 Tetratricopeptide repeat-like domain VPUCM_0595 PF13360 PQQ-like domain VPUCM_0596 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VPUCM_0596 PF01926 50S ribosome-binding GTPase VPUCM_0599 PF02601 Exonuclease VII, large subunit VPUCM_0599 PF13742 OB-fold nucleic acid binding domain VPUCM_0600 PF00571 CBS domain VPUCM_0600 PF00478 IMP dehydrogenase / GMP reductase domain VPUCM_0601 PF00117 Glutamine amidotransferase class-I VPUCM_0601 PF02540 NAD synthase VPUCM_0601 PF00958 GMP synthase C terminal domain VPUCM_0602 PF13356 Arm DNA-binding domain VPUCM_0602 PF00589 Phage integrase family VPUCM_0603 PF01966 HD domain VPUCM_0603 PF13286 Phosphohydrolase-associated domain VPUCM_0619 PF03553 Na+/H+ antiporter family VPUCM_0620 PF06483 Chitinase C VPUCM_0620 PF00704 Glycosyl hydrolases family 18 VPUCM_0621 PF01184 GPR1/FUN34/yaaH family VPUCM_0623 PF01235 Sodium:alanine symporter family VPUCM_0624 PF01266 FAD dependent oxidoreductase VPUCM_0625 PF03466 LysR substrate binding domain VPUCM_0625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_0629 PF07969 Amidohydrolase family VPUCM_0631 PF01053 Cys/Met metabolism PLP-dependent enzyme VPUCM_0632 PF00202 Aminotransferase class-III VPUCM_0636 PF00583 Acetyltransferase (GNAT) family VPUCM_0636 PF00795 Carbon-nitrogen hydrolase VPUCM_0637 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_0637 PF03466 LysR substrate binding domain VPUCM_0641 PF13737 Transposase DDE domain VPUCM_0642 PF12102 Domain of unknown function (DUF3578) VPUCM_0642 PF07728 AAA domain (dynein-related subfamily) VPUCM_0644 PF00589 Phage integrase family VPUCM_0644 PF13356 Arm DNA-binding domain VPUCM_0645 PF00589 Phage integrase family VPUCM_0645 PF13356 Arm DNA-binding domain VPUCM_0646 PF13276 HTH-like domain VPUCM_0646 PF00665 Integrase core domain VPUCM_0646 PF13333 Integrase core domain VPUCM_0647 PF00589 Phage integrase family VPUCM_0647 PF13356 Arm DNA-binding domain VPUCM_0648 PF01668 SmpB protein VPUCM_0649 PF03364 Polyketide cyclase / dehydrase and lipid transport VPUCM_0650 PF03658 RnfH family Ubiquitin VPUCM_0651 PF04355 SmpA / OmlA family VPUCM_0652 PF02463 RecF/RecN/SMC N terminal domain VPUCM_0654 PF01513 ATP-NAD kinase VPUCM_0655 PF01025 GrpE VPUCM_0656 PF00375 Sodium:dicarboxylate symporter family VPUCM_0658 PF00012 Hsp70 protein VPUCM_0659 PF01556 DnaJ C terminal domain VPUCM_0659 PF00226 DnaJ domain VPUCM_0659 PF00684 DnaJ central domain VPUCM_0660 PF07963 Prokaryotic N-terminal methylation motif VPUCM_0660 PF00114 Pilin (bacterial filament) VPUCM_0665 PF03806 AbgT putative transporter family VPUCM_0666 PF14437 MafB19-like deaminase VPUCM_0669 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family VPUCM_0670 PF13609 Gram-negative porin VPUCM_0671 PF01272 Transcription elongation factor, GreA/GreB, C-term VPUCM_0671 PF03449 Transcription elongation factor, N-terminal VPUCM_0672 PF01985 CRS1 / YhbY (CRM) domain VPUCM_0673 PF01728 FtsJ-like methyltransferase VPUCM_0674 PF06480 FtsH Extracellular VPUCM_0674 PF17862 AAA+ lid domain VPUCM_0674 PF01434 Peptidase family M41 VPUCM_0674 PF00004 ATPase family associated with various cellular activities (AAA) VPUCM_0675 PF00809 Pterin binding enzyme VPUCM_0676 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VPUCM_0676 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VPUCM_0676 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VPUCM_0676 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VPUCM_0677 PF03840 Preprotein translocase SecG subunit VPUCM_0678 PF17384 RimP C-terminal SH3 domain VPUCM_0678 PF02576 RimP N-terminal domain VPUCM_0679 PF00575 S1 RNA binding domain VPUCM_0679 PF08529 NusA N-terminal domain VPUCM_0679 PF13184 NusA-like KH domain VPUCM_0680 PF04760 Translation initiation factor IF-2, N-terminal region VPUCM_0680 PF11987 Translation-initiation factor 2 VPUCM_0680 PF00009 Elongation factor Tu GTP binding domain VPUCM_0680 PF08364 Bacterial translation initiation factor IF-2 associated region VPUCM_0681 PF02033 Ribosome-binding factor A VPUCM_0682 PF01509 TruB family pseudouridylate synthase (N terminal domain) VPUCM_0682 PF09157 Pseudouridine synthase II TruB, C-terminal VPUCM_0682 PF16198 tRNA pseudouridylate synthase B C-terminal domain VPUCM_0683 PF00312 Ribosomal protein S15 VPUCM_0684 PF00575 S1 RNA binding domain VPUCM_0684 PF00013 KH domain VPUCM_0684 PF03725 3' exoribonuclease family, domain 2 VPUCM_0684 PF01138 3' exoribonuclease family, domain 1 VPUCM_0684 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain VPUCM_0685 PF13181 Tetratricopeptide repeat VPUCM_0685 PF07719 Tetratricopeptide repeat VPUCM_0687 PF01554 MatE VPUCM_0690 PF03707 Bacterial signalling protein N terminal repeat VPUCM_0690 PF00563 EAL domain VPUCM_0690 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_0692 PF13508 Acetyltransferase (GNAT) domain VPUCM_0703 PF11799 impB/mucB/samB family C-terminal domain VPUCM_0703 PF13438 Domain of unknown function (DUF4113) VPUCM_0703 PF00817 impB/mucB/samB family VPUCM_0704 PF00717 Peptidase S24-like VPUCM_0711 PF13340 Putative transposase of IS4/5 family (DUF4096) VPUCM_0713 PF00011 Hsp20/alpha crystallin family VPUCM_0714 PF17871 AAA lid domain VPUCM_0714 PF10431 C-terminal, D2-small domain, of ClpB protein VPUCM_0714 PF07724 AAA domain (Cdc48 subfamily) VPUCM_0714 PF00004 ATPase family associated with various cellular activities (AAA) VPUCM_0714 PF02861 Clp amino terminal domain, pathogenicity island component VPUCM_0715 PF00563 EAL domain VPUCM_0715 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_0715 PF03707 Bacterial signalling protein N terminal repeat VPUCM_0717 PF01435 Peptidase family M48 VPUCM_0718 PF00595 PDZ domain VPUCM_0720 PF00929 Exonuclease VPUCM_0720 PF11490 DNA polymerase III polC-type N-terminus II VPUCM_0720 PF14579 Helix-hairpin-helix motif VPUCM_0720 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VPUCM_0720 PF14480 DNA polymerase III polC-type N-terminus I VPUCM_0720 PF02811 PHP domain VPUCM_0720 PF07733 Bacterial DNA polymerase III alpha NTPase domain VPUCM_0722 PF12161 HsdM N-terminal domain VPUCM_0722 PF02384 N-6 DNA Methylase VPUCM_0724 PF12008 Type I restriction and modification enzyme - subunit R C terminal VPUCM_0724 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VPUCM_0724 PF18766 SWI2/SNF2 ATPase VPUCM_0742 PF10411 Disulfide bond isomerase protein N-terminus VPUCM_0742 PF13098 Thioredoxin-like domain VPUCM_0745 PF10502 Signal peptidase, peptidase S26 VPUCM_0747 PF06834 TraU protein VPUCM_0748 PF06986 Type-1V conjugative transfer system mating pair stabilisation VPUCM_0751 PF04231 Endonuclease I VPUCM_0754 PF00436 Single-strand binding protein family VPUCM_0758 PF07728 AAA domain (dynein-related subfamily) VPUCM_0758 PF08406 CbbQ/NirQ/NorQ C-terminal VPUCM_0762 PF00092 von Willebrand factor type A domain VPUCM_0763 PF04002 RadC-like JAB domain VPUCM_0770 PF02954 Bacterial regulatory protein, Fis family VPUCM_0770 PF00072 Response regulator receiver domain VPUCM_0770 PF00158 Sigma-54 interaction domain VPUCM_0772 PF00011 Hsp20/alpha crystallin family VPUCM_0773 PF00011 Hsp20/alpha crystallin family VPUCM_0774 PF00999 Sodium/hydrogen exchanger family VPUCM_0774 PF02080 TrkA-C domain VPUCM_0774 PF02254 TrkA-N domain VPUCM_0776 PF01025 GrpE VPUCM_0777 PF00012 Hsp70 protein VPUCM_0781 PF10431 C-terminal, D2-small domain, of ClpB protein VPUCM_0781 PF00004 ATPase family associated with various cellular activities (AAA) VPUCM_0781 PF02861 Clp amino terminal domain, pathogenicity island component VPUCM_0781 PF17871 AAA lid domain VPUCM_0781 PF07724 AAA domain (Cdc48 subfamily) VPUCM_0782 PF01556 DnaJ C terminal domain VPUCM_0782 PF00226 DnaJ domain VPUCM_0784 PF01435 Peptidase family M48 VPUCM_0785 PF13340 Putative transposase of IS4/5 family (DUF4096) VPUCM_0787 PF01116 Fructose-bisphosphate aldolase class-II VPUCM_0789 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_0789 PF00072 Response regulator receiver domain VPUCM_0793 PF06122 Conjugative relaxosome accessory transposon protein VPUCM_0802 PF01381 Helix-turn-helix VPUCM_0802 PF00717 Peptidase S24-like VPUCM_0803 PF03144 Elongation factor Tu domain 2 VPUCM_0803 PF16658 Class II release factor RF3, C-terminal domain VPUCM_0803 PF00009 Elongation factor Tu GTP binding domain VPUCM_0805 PF01026 TatD related DNase VPUCM_0806 PF07662 Na+ dependent nucleoside transporter C-terminus VPUCM_0806 PF07670 Nucleoside recognition VPUCM_0806 PF01773 Na+ dependent nucleoside transporter N-terminus VPUCM_0807 PF01791 DeoC/LacD family aldolase VPUCM_0808 PF02885 Glycosyl transferase family, helical bundle domain VPUCM_0808 PF00591 Glycosyl transferase family, a/b domain VPUCM_0808 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain VPUCM_0809 PF01676 Metalloenzyme superfamily VPUCM_0810 PF01048 Phosphorylase superfamily VPUCM_0812 PF18429 Domain of unknown function (DUF5609) VPUCM_0814 PF18073 Rubredoxin metal binding domain VPUCM_0815 PF03144 Elongation factor Tu domain 2 VPUCM_0815 PF00679 Elongation factor G C-terminus VPUCM_0815 PF03764 Elongation factor G, domain IV VPUCM_0815 PF14492 Elongation Factor G, domain II VPUCM_0815 PF00009 Elongation factor Tu GTP binding domain VPUCM_0816 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_0816 PF03466 LysR substrate binding domain VPUCM_0818 PF00501 AMP-binding enzyme VPUCM_0819 PF02805 Metal binding domain of Ada VPUCM_0819 PF12833 Helix-turn-helix domain VPUCM_0823 PF13629 Pilus formation protein N terminal region VPUCM_0823 PF04972 BON domain VPUCM_0823 PF00263 Bacterial type II and III secretion system protein VPUCM_0829 PF00437 Type II/IV secretion system protein VPUCM_0835 PF03466 LysR substrate binding domain VPUCM_0835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_0836 PF13520 Amino acid permease VPUCM_0837 PF04074 YhcH/YjgK/YiaL VPUCM_0838 PF02929 Beta galactosidase small chain VPUCM_0838 PF00703 Glycosyl hydrolases family 2 VPUCM_0838 PF02837 Glycosyl hydrolases family 2, sugar binding domain VPUCM_0838 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VPUCM_0838 PF16353 Domain of unknown function(DUF4981) VPUCM_0839 PF00356 Bacterial regulatory proteins, lacI family VPUCM_0840 PF16363 GDP-mannose 4,6 dehydratase VPUCM_0841 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VPUCM_0841 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VPUCM_0842 PF08544 GHMP kinases C terminal VPUCM_0842 PF00288 GHMP kinases N terminal domain VPUCM_0842 PF10509 Galactokinase galactose-binding signature VPUCM_0843 PF01263 Aldose 1-epimerase VPUCM_0844 PF00474 Sodium:solute symporter family VPUCM_0846 PF00929 Exonuclease VPUCM_0846 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VPUCM_0846 PF07733 Bacterial DNA polymerase III alpha NTPase domain VPUCM_0846 PF14579 Helix-hairpin-helix motif VPUCM_0846 PF02811 PHP domain VPUCM_0847 PF00356 Bacterial regulatory proteins, lacI family VPUCM_0848 PF01588 Putative tRNA binding domain VPUCM_0851 PF01544 CorA-like Mg2+ transporter protein VPUCM_0852 PF01266 FAD dependent oxidoreductase VPUCM_0852 PF16901 C-terminal domain of alpha-glycerophosphate oxidase VPUCM_0853 PF00455 DeoR C terminal sensor domain VPUCM_0853 PF08220 DeoR-like helix-turn-helix domain VPUCM_0854 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VPUCM_0854 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VPUCM_0855 PF00230 Major intrinsic protein VPUCM_0857 PF07690 Major Facilitator Superfamily VPUCM_0858 PF03009 Glycerophosphoryl diester phosphodiesterase family VPUCM_0859 PF14602 Hexapeptide repeat of succinyl-transferase VPUCM_0859 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle VPUCM_0860 PF07130 YebG protein VPUCM_0861 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_0861 PF03466 LysR substrate binding domain VPUCM_0863 PF00884 Sulfatase VPUCM_0863 PF11893 Domain of unknown function (DUF3413) VPUCM_0864 PF17946 RecC C-terminal domain VPUCM_0865 PF13361 UvrD-like helicase C-terminal domain VPUCM_0865 PF00580 UvrD/REP helicase N-terminal domain VPUCM_0865 PF12705 PD-(D/E)XK nuclease superfamily VPUCM_0866 PF13538 UvrD-like helicase C-terminal domain VPUCM_0868 PF00696 Amino acid kinase family VPUCM_0868 PF00583 Acetyltransferase (GNAT) family VPUCM_0870 PF03562 MltA specific insert domain VPUCM_0870 PF06725 3D domain VPUCM_0871 PF00899 ThiF family VPUCM_0872 PF02657 Fe-S metabolism associated domain VPUCM_0873 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_0873 PF17158 Membrane-associated sensor, integral membrane domain VPUCM_0874 PF00266 Aminotransferase class-V VPUCM_0875 PF01965 DJ-1/PfpI family VPUCM_0876 PF08546 Ketopantoate reductase PanE/ApbA C terminal VPUCM_0876 PF02558 Ketopantoate reductase PanE/ApbA VPUCM_0877 PF03502 Nucleoside-specific channel-forming protein, Tsx VPUCM_0880 PF04542 Sigma-70 region 2 VPUCM_0880 PF04545 Sigma-70, region 4 VPUCM_0882 PF07690 Major Facilitator Superfamily VPUCM_0883 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VPUCM_0884 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VPUCM_0884 PF03923 Uncharacterized lipoprotein VPUCM_0885 PF05175 Methyltransferase small domain VPUCM_0886 PF01722 BolA-like protein VPUCM_0887 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) VPUCM_0887 PF11973 NQRA C-terminal domain VPUCM_0888 PF03116 NQR2, RnfD, RnfE family VPUCM_0889 PF04205 FMN-binding domain VPUCM_0890 PF02508 Rnf-Nqr subunit, membrane protein VPUCM_0891 PF02508 Rnf-Nqr subunit, membrane protein VPUCM_0892 PF00970 Oxidoreductase FAD-binding domain VPUCM_0892 PF00175 Oxidoreductase NAD-binding domain VPUCM_0892 PF00111 2Fe-2S iron-sulfur cluster binding domain VPUCM_0893 PF02424 ApbE family VPUCM_0896 PF11798 IMS family HHH motif VPUCM_0896 PF00817 impB/mucB/samB family VPUCM_0896 PF11799 impB/mucB/samB family C-terminal domain VPUCM_0897 PF00270 DEAD/DEAH box helicase VPUCM_0897 PF00271 Helicase conserved C-terminal domain VPUCM_0897 PF16124 RecQ zinc-binding VPUCM_0897 PF09382 RQC domain VPUCM_0897 PF00570 HRDC domain VPUCM_0898 PF01272 Transcription elongation factor, GreA/GreB, C-term VPUCM_0898 PF03449 Transcription elongation factor, N-terminal VPUCM_0901 PF00209 Sodium:neurotransmitter symporter family VPUCM_0903 PF06786 Uncharacterised protein family (UPF0253) VPUCM_0905 PF04073 Aminoacyl-tRNA editing domain VPUCM_0905 PF03129 Anticodon binding domain VPUCM_0905 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VPUCM_0906 PF18389 TrmO C-terminal domain VPUCM_0906 PF01980 tRNA-methyltransferase O VPUCM_0907 PF01197 Ribosomal protein L31 VPUCM_0909 PF03806 AbgT putative transporter family VPUCM_0910 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 VPUCM_0914 PF00849 RNA pseudouridylate synthase VPUCM_0914 PF04287 tRNA pseudouridine synthase C VPUCM_0915 PF00849 RNA pseudouridylate synthase VPUCM_0916 PF11944 Protein of unknown function (DUF3461) VPUCM_0917 PF01966 HD domain VPUCM_0917 PF01909 Nucleotidyltransferase domain VPUCM_0917 PF08335 GlnD PII-uridylyltransferase VPUCM_0917 PF01842 ACT domain VPUCM_0918 PF00557 Metallopeptidase family M24 VPUCM_0919 PF00318 Ribosomal protein S2 VPUCM_0920 PF00889 Elongation factor TS VPUCM_0921 PF00696 Amino acid kinase family VPUCM_0922 PF01765 Ribosome recycling factor VPUCM_0923 PF01255 Putative undecaprenyl diphosphate synthase VPUCM_0925 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain VPUCM_0925 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase VPUCM_0925 PF13288 DXP reductoisomerase C-terminal domain VPUCM_0926 PF17820 PDZ domain VPUCM_0926 PF02163 Peptidase family M50 VPUCM_0927 PF01103 Surface antigen VPUCM_0927 PF07244 Surface antigen variable number repeat VPUCM_0928 PF03938 Outer membrane protein (OmpH-like) VPUCM_0929 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VPUCM_0929 PF00132 Bacterial transferase hexapeptide (six repeats) VPUCM_0930 PF07977 FabA-like domain VPUCM_0931 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 VPUCM_0931 PF00132 Bacterial transferase hexapeptide (six repeats) VPUCM_0932 PF02684 Lipid-A-disaccharide synthetase VPUCM_0933 PF01351 Ribonuclease HII VPUCM_0934 PF01336 OB-fold nucleic acid binding domain VPUCM_0934 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VPUCM_0934 PF14579 Helix-hairpin-helix motif VPUCM_0934 PF02811 PHP domain VPUCM_0934 PF07733 Bacterial DNA polymerase III alpha NTPase domain VPUCM_0935 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit VPUCM_0936 PF01171 PP-loop family VPUCM_0936 PF09179 TilS substrate binding domain VPUCM_0936 PF11734 TilS substrate C-terminal domain VPUCM_0937 PF00034 Cytochrome c VPUCM_0938 PF00543 Nitrogen regulatory protein P-II VPUCM_0939 PF03372 Endonuclease/Exonuclease/phosphatase family VPUCM_0941 PF01476 LysM domain VPUCM_0941 PF01464 Transglycosylase SLT domain VPUCM_0942 PF00753 Metallo-beta-lactamase superfamily VPUCM_0942 PF16123 Hydroxyacylglutathione hydrolase C-terminus VPUCM_0943 PF08241 Methyltransferase domain VPUCM_0944 PF00075 RNase H VPUCM_0945 PF00929 Exonuclease VPUCM_0949 PF00583 Acetyltransferase (GNAT) family VPUCM_0950 PF01740 STAS domain VPUCM_0950 PF00916 Sulfate permease family VPUCM_0951 PF09317 Domain of unknown function (DUF1974) VPUCM_0951 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VPUCM_0951 PF02770 Acyl-CoA dehydrogenase, middle domain VPUCM_0951 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VPUCM_0952 PF13580 SIS domain VPUCM_0953 PF13230 Glutamine amidotransferases class-II VPUCM_0954 PF00950 ABC 3 transport family VPUCM_0955 PF00005 ABC transporter VPUCM_0956 PF01297 Zinc-uptake complex component A periplasmic VPUCM_0957 PF02311 AraC-like ligand binding domain VPUCM_0957 PF12833 Helix-turn-helix domain VPUCM_0959 PF04023 FeoA domain VPUCM_0960 PF02421 Ferrous iron transport protein B VPUCM_0960 PF17910 FeoB cytosolic helical domain VPUCM_0960 PF07670 Nucleoside recognition VPUCM_0960 PF07664 Ferrous iron transport protein B C terminus VPUCM_0963 PF00750 tRNA synthetases class I (R) VPUCM_0963 PF05746 DALR anticodon binding domain VPUCM_0963 PF03485 Arginyl tRNA synthetase N terminal domain VPUCM_0964 PF06185 YecM protein VPUCM_0965 PF01842 ACT domain VPUCM_0965 PF00551 Formyl transferase VPUCM_0966 PF04851 Type III restriction enzyme, res subunit VPUCM_0966 PF13307 Helicase C-terminal domain VPUCM_0967 PF00814 Glycoprotease family VPUCM_0970 PF00561 alpha/beta hydrolase fold VPUCM_0971 PF00501 AMP-binding enzyme VPUCM_0971 PF13193 AMP-binding enzyme C-terminal domain VPUCM_0972 PF00570 HRDC domain VPUCM_0972 PF01612 3'-5' exonuclease VPUCM_0973 PF03776 Septum formation topological specificity factor MinE VPUCM_0974 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VPUCM_0975 PF03775 Septum formation inhibitor MinC, C-terminal domain VPUCM_0975 PF05209 Septum formation inhibitor MinC, N-terminal domain VPUCM_0976 PF05166 YcgL domain VPUCM_0977 PF13406 Transglycosylase SLT domain VPUCM_0978 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_0978 PF03466 LysR substrate binding domain VPUCM_0979 PF07670 Nucleoside recognition VPUCM_0979 PF01773 Na+ dependent nucleoside transporter N-terminus VPUCM_0979 PF07662 Na+ dependent nucleoside transporter C-terminus VPUCM_0980 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain VPUCM_0980 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain VPUCM_0982 PF00109 Beta-ketoacyl synthase, N-terminal domain VPUCM_0982 PF02801 Beta-ketoacyl synthase, C-terminal domain VPUCM_0984 PF07977 FabA-like domain VPUCM_0985 PF00109 Beta-ketoacyl synthase, N-terminal domain VPUCM_0985 PF02801 Beta-ketoacyl synthase, C-terminal domain VPUCM_0990 PF00221 Aromatic amino acid lyase VPUCM_0991 PF00535 Glycosyl transferase family 2 VPUCM_0992 PF07977 FabA-like domain VPUCM_0995 PF00550 Phosphopantetheine attachment site VPUCM_0996 PF00550 Phosphopantetheine attachment site VPUCM_1001 PF04820 Tryptophan halogenase VPUCM_1004 PF01595 Cyclin M transmembrane N-terminal domain VPUCM_1004 PF03471 Transporter associated domain VPUCM_1004 PF00571 CBS domain VPUCM_1005 PF00271 Helicase conserved C-terminal domain VPUCM_1005 PF00270 DEAD/DEAH box helicase VPUCM_1006 PF02080 TrkA-C domain VPUCM_1006 PF02254 TrkA-N domain VPUCM_1007 PF02386 Cation transport protein VPUCM_1010 PF02696 Uncharacterized ACR, YdiU/UPF0061 family VPUCM_1011 PF03480 Bacterial extracellular solute-binding protein, family 7 VPUCM_1012 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VPUCM_1013 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VPUCM_1015 PF00072 Response regulator receiver domain VPUCM_1015 PF02954 Bacterial regulatory protein, Fis family VPUCM_1015 PF00158 Sigma-54 interaction domain VPUCM_1016 PF02743 Cache domain VPUCM_1016 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_1016 PF00512 His Kinase A (phospho-acceptor) domain VPUCM_1017 PF05698 Bacterial trigger factor protein (TF) C-terminus VPUCM_1017 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VPUCM_1017 PF05697 Bacterial trigger factor protein (TF) VPUCM_1018 PF00574 Clp protease VPUCM_1019 PF06689 ClpX C4-type zinc finger VPUCM_1019 PF10431 C-terminal, D2-small domain, of ClpB protein VPUCM_1019 PF07724 AAA domain (Cdc48 subfamily) VPUCM_1020 PF02190 ATP-dependent protease La (LON) substrate-binding domain VPUCM_1020 PF05362 Lon protease (S16) C-terminal proteolytic domain VPUCM_1020 PF00004 ATPase family associated with various cellular activities (AAA) VPUCM_1021 PF00216 Bacterial DNA-binding protein VPUCM_1022 PF13145 PPIC-type PPIASE domain VPUCM_1026 PF01966 HD domain VPUCM_1026 PF13286 Phosphohydrolase-associated domain VPUCM_1028 PF00155 Aminotransferase class I and II VPUCM_1029 PF00425 chorismate binding enzyme VPUCM_1030 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VPUCM_1030 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VPUCM_1030 PF16582 Middle domain of thiamine pyrophosphate VPUCM_1031 PF12697 Alpha/beta hydrolase family VPUCM_1032 PF00378 Enoyl-CoA hydratase/isomerase VPUCM_1033 PF13378 Enolase C-terminal domain-like VPUCM_1034 PF00501 AMP-binding enzyme VPUCM_1034 PF13193 AMP-binding enzyme C-terminal domain VPUCM_1036 PF03601 Conserved hypothetical protein 698 VPUCM_1037 PF07690 Major Facilitator Superfamily VPUCM_1041 PF13533 Biotin-lipoyl like VPUCM_1042 PF00873 AcrB/AcrD/AcrF family VPUCM_1046 PF00291 Pyridoxal-phosphate dependent enzyme VPUCM_1047 PF13404 AsnC-type helix-turn-helix domain VPUCM_1047 PF01037 Lrp/AsnC ligand binding domain VPUCM_1050 PF09619 Type III secretion system lipoprotein chaperone (YscW) VPUCM_1051 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VPUCM_1054 PF17152 Periplasmic sensor domain VPUCM_1054 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_1067 PF07693 KAP family P-loop domain VPUCM_1070 PF08032 RNA 2'-O ribose methyltransferase substrate binding VPUCM_1070 PF00588 SpoU rRNA Methylase family VPUCM_1071 PF00037 4Fe-4S binding domain VPUCM_1071 PF11953 Domain of unknown function (DUF3470) VPUCM_1073 PF00478 IMP dehydrogenase / GMP reductase domain VPUCM_1073 PF00571 CBS domain VPUCM_1074 PF00403 Heavy-metal-associated domain VPUCM_1075 PF01048 Phosphorylase superfamily VPUCM_1077 PF00672 HAMP domain VPUCM_1077 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPUCM_1078 PF01230 HIT domain VPUCM_1082 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VPUCM_1082 PF13036 Peptidoglycan-synthase activator LpoB VPUCM_1084 PF05728 Uncharacterised protein family (UPF0227) VPUCM_1085 PF07992 Pyridine nucleotide-disulphide oxidoreductase VPUCM_1088 PF17757 UvrB interaction domain VPUCM_1088 PF03461 TRCF domain VPUCM_1088 PF00271 Helicase conserved C-terminal domain VPUCM_1088 PF00270 DEAD/DEAH box helicase VPUCM_1088 PF02559 CarD-like/TRCF domain VPUCM_1090 PF02687 FtsX-like permease family VPUCM_1090 PF12704 MacB-like periplasmic core domain VPUCM_1091 PF00005 ABC transporter VPUCM_1092 PF02687 FtsX-like permease family VPUCM_1092 PF12704 MacB-like periplasmic core domain VPUCM_1094 PF03772 Competence protein VPUCM_1094 PF00753 Metallo-beta-lactamase superfamily VPUCM_1094 PF13567 Domain of unknown function (DUF4131) VPUCM_1095 PF00664 ABC transporter transmembrane region VPUCM_1095 PF00005 ABC transporter VPUCM_1096 PF02606 Tetraacyldisaccharide-1-P 4'-kinase VPUCM_1097 PF03966 Trm112p-like protein VPUCM_1098 PF02348 Cytidylyltransferase VPUCM_1099 PF04293 SpoVR like protein VPUCM_1100 PF04285 Protein of unknown function (DUF444) VPUCM_1101 PF08298 PrkA AAA domain VPUCM_1101 PF06798 PrkA serine protein kinase C-terminal domain VPUCM_1102 PF03887 YfbU domain VPUCM_1104 PF04055 Radical SAM superfamily VPUCM_1106 PF01228 Glycine radical VPUCM_1106 PF02901 Pyruvate formate lyase-like VPUCM_1109 PF00005 ABC transporter VPUCM_1110 PF00497 Bacterial extracellular solute-binding proteins, family 3 VPUCM_1111 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_1112 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_1116 PF17757 UvrB interaction domain VPUCM_1116 PF12344 Ultra-violet resistance protein B VPUCM_1116 PF02151 UvrB/uvrC motif VPUCM_1116 PF04851 Type III restriction enzyme, res subunit VPUCM_1116 PF00271 Helicase conserved C-terminal domain VPUCM_1117 PF00072 Response regulator receiver domain VPUCM_1117 PF00158 Sigma-54 interaction domain VPUCM_1117 PF02954 Bacterial regulatory protein, Fis family VPUCM_1118 PF01627 Hpt domain VPUCM_1119 PF01933 Uncharacterised protein family UPF0052 VPUCM_1120 PF04055 Radical SAM superfamily VPUCM_1120 PF06463 Molybdenum Cofactor Synthesis C VPUCM_1121 PF00994 Probable molybdopterin binding domain VPUCM_1122 PF01967 MoaC family VPUCM_1123 PF02597 ThiS family VPUCM_1124 PF02391 MoaE protein VPUCM_1125 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VPUCM_1126 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_1127 PF12911 N-terminal TM domain of oligopeptide transport permease C VPUCM_1127 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_1128 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VPUCM_1128 PF00005 ABC transporter VPUCM_1129 PF00005 ABC transporter VPUCM_1129 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VPUCM_1130 PF13409 Glutathione S-transferase, N-terminal domain VPUCM_1132 PF13194 Domain of unknown function (DUF4010) VPUCM_1133 PF01515 Phosphate acetyl/butaryl transferase VPUCM_1133 PF07085 DRTGG domain VPUCM_1134 PF00871 Acetokinase family VPUCM_1135 PF04217 Protein of unknown function, DUF412 VPUCM_1137 PF02653 Branched-chain amino acid transport system / permease component VPUCM_1138 PF00005 ABC transporter VPUCM_1139 PF00128 Alpha amylase, catalytic domain VPUCM_1139 PF02903 Alpha amylase, N-terminal ig-like domain VPUCM_1140 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_1140 PF00072 Response regulator receiver domain VPUCM_1141 PF02445 Quinolinate synthetase A protein VPUCM_1143 PF03994 Domain of Unknown Function (DUF350) VPUCM_1145 PF03738 Glutathionylspermidine synthase preATP-grasp VPUCM_1147 PF00072 Response regulator receiver domain VPUCM_1147 PF00512 His Kinase A (phospho-acceptor) domain VPUCM_1147 PF09308 LuxQ, periplasmic VPUCM_1147 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_1148 PF06610 L-alanine exporter VPUCM_1150 PF13276 HTH-like domain VPUCM_1150 PF13333 Integrase core domain VPUCM_1150 PF00665 Integrase core domain VPUCM_1152 PF07728 AAA domain (dynein-related subfamily) VPUCM_1152 PF12102 Domain of unknown function (DUF3578) VPUCM_1159 PF00271 Helicase conserved C-terminal domain VPUCM_1159 PF00176 SNF2 family N-terminal domain VPUCM_1161 PF12161 HsdM N-terminal domain VPUCM_1161 PF02384 N-6 DNA Methylase VPUCM_1165 PF03793 PASTA domain VPUCM_1165 PF00069 Protein kinase domain VPUCM_1168 PF00672 HAMP domain VPUCM_1168 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPUCM_1168 PF12729 Four helix bundle sensory module for signal transduction VPUCM_1169 PF00529 HlyD membrane-fusion protein of T1SS VPUCM_1169 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VPUCM_1170 PF00873 AcrB/AcrD/AcrF family VPUCM_1174 PF00579 tRNA synthetases class I (W and Y) VPUCM_1176 PF03372 Endonuclease/Exonuclease/phosphatase family VPUCM_1177 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) VPUCM_1179 PF03466 LysR substrate binding domain VPUCM_1179 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_1181 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VPUCM_1181 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VPUCM_1182 PF01037 Lrp/AsnC ligand binding domain VPUCM_1183 PF01580 FtsK/SpoIIIE family VPUCM_1183 PF17854 FtsK alpha domain VPUCM_1183 PF09397 Ftsk gamma domain VPUCM_1183 PF13491 4TM region of DNA translocase FtsK/SpoIIIE VPUCM_1184 PF03548 Outer membrane lipoprotein carrier protein LolA VPUCM_1185 PF00004 ATPase family associated with various cellular activities (AAA) VPUCM_1185 PF16193 AAA C-terminal domain VPUCM_1185 PF12002 MgsA AAA+ ATPase C terminal VPUCM_1186 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VPUCM_1186 PF02403 Seryl-tRNA synthetase N-terminal domain VPUCM_1189 PF01258 Prokaryotic dksA/traR C4-type zinc finger VPUCM_1190 PF00202 Aminotransferase class-III VPUCM_1191 PF06968 Biotin and Thiamin Synthesis associated domain VPUCM_1191 PF04055 Radical SAM superfamily VPUCM_1192 PF00155 Aminotransferase class I and II VPUCM_1193 PF08241 Methyltransferase domain VPUCM_1196 PF01435 Peptidase family M48 VPUCM_1205 PF08328 Adenylosuccinate lyase C-terminal VPUCM_1205 PF00206 Lyase VPUCM_1206 PF04356 Protein of unknown function (DUF489) VPUCM_1209 PF00294 pfkB family carbohydrate kinase VPUCM_1210 PF00816 H-NS histone family VPUCM_1211 PF03553 Na+/H+ antiporter family VPUCM_1214 PF02954 Bacterial regulatory protein, Fis family VPUCM_1214 PF00072 Response regulator receiver domain VPUCM_1214 PF00158 Sigma-54 interaction domain VPUCM_1215 PF08029 HisG, C-terminal domain VPUCM_1215 PF01634 ATP phosphoribosyltransferase VPUCM_1216 PF00815 Histidinol dehydrogenase VPUCM_1217 PF00155 Aminotransferase class I and II VPUCM_1218 PF00475 Imidazoleglycerol-phosphate dehydratase VPUCM_1218 PF08645 Polynucleotide kinase 3 phosphatase VPUCM_1219 PF00117 Glutamine amidotransferase class-I VPUCM_1220 PF00977 Histidine biosynthesis protein VPUCM_1221 PF00977 Histidine biosynthesis protein VPUCM_1222 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VPUCM_1222 PF01502 Phosphoribosyl-AMP cyclohydrolase VPUCM_1223 PF02810 SEC-C motif VPUCM_1224 PF08668 HDOD domain VPUCM_1224 PF00563 EAL domain VPUCM_1225 PF00149 Calcineurin-like phosphoesterase VPUCM_1226 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VPUCM_1227 PF09190 DALR domain VPUCM_1227 PF01406 tRNA synthetases class I (C) catalytic domain VPUCM_1228 PF00265 Thymidine kinase VPUCM_1233 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VPUCM_1233 PF00529 HlyD membrane-fusion protein of T1SS VPUCM_1234 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_1234 PF03466 LysR substrate binding domain VPUCM_1238 PF00672 HAMP domain VPUCM_1238 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_1238 PF00512 His Kinase A (phospho-acceptor) domain VPUCM_1239 PF00072 Response regulator receiver domain VPUCM_1239 PF00486 Transcriptional regulatory protein, C terminal VPUCM_1240 PF00672 HAMP domain VPUCM_1240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPUCM_1241 PF11842 Domain of unknown function (DUF3362) VPUCM_1241 PF08497 Radical SAM N-terminal VPUCM_1241 PF04055 Radical SAM superfamily VPUCM_1242 PF00563 EAL domain VPUCM_1242 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_1242 PF01590 GAF domain VPUCM_1242 PF00360 Phytochrome region VPUCM_1245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_1245 PF03466 LysR substrate binding domain VPUCM_1246 PF01717 Cobalamin-independent synthase, Catalytic domain VPUCM_1246 PF08267 Cobalamin-independent synthase, N-terminal domain VPUCM_1248 PF03795 YCII-related domain VPUCM_1249 PF03061 Thioesterase superfamily VPUCM_1250 PF04279 Intracellular septation protein A VPUCM_1252 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_1252 PF00072 Response regulator receiver domain VPUCM_1253 PF17327 Acyl homoserine lactone synthase VPUCM_1254 PF00375 Sodium:dicarboxylate symporter family VPUCM_1255 PF00501 AMP-binding enzyme VPUCM_1255 PF13193 AMP-binding enzyme C-terminal domain VPUCM_1256 PF13545 Crp-like helix-turn-helix domain VPUCM_1256 PF00027 Cyclic nucleotide-binding domain VPUCM_1257 PF00290 Tryptophan synthase alpha chain VPUCM_1258 PF00291 Pyridoxal-phosphate dependent enzyme VPUCM_1259 PF00218 Indole-3-glycerol phosphate synthase VPUCM_1259 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VPUCM_1260 PF00591 Glycosyl transferase family, a/b domain VPUCM_1260 PF02885 Glycosyl transferase family, helical bundle domain VPUCM_1261 PF00117 Glutamine amidotransferase class-I VPUCM_1262 PF00425 chorismate binding enzyme VPUCM_1262 PF04715 Anthranilate synthase component I, N terminal region VPUCM_1263 PF08056 Tryptophan operon leader peptide VPUCM_1264 PF02811 PHP domain VPUCM_1265 PF01300 Telomere recombination VPUCM_1267 PF01479 S4 domain VPUCM_1267 PF00849 RNA pseudouridylate synthase VPUCM_1268 PF04269 Protein of unknown function, DUF440 VPUCM_1269 PF08207 Elongation factor P (EF-P) KOW-like domain VPUCM_1269 PF09285 Elongation factor P, C-terminal VPUCM_1269 PF01132 Elongation factor P (EF-P) OB domain VPUCM_1271 PF03104 DNA polymerase family B, exonuclease domain VPUCM_1271 PF00136 DNA polymerase family B VPUCM_1272 PF00196 Bacterial regulatory proteins, luxR family VPUCM_1272 PF00072 Response regulator receiver domain VPUCM_1273 PF08459 UvrC Helix-hairpin-helix N-terminal VPUCM_1273 PF02151 UvrB/uvrC motif VPUCM_1273 PF01541 GIY-YIG catalytic domain VPUCM_1274 PF01066 CDP-alcohol phosphatidyltransferase VPUCM_1276 PF00202 Aminotransferase class-III VPUCM_1277 PF03435 Saccharopine dehydrogenase NADP binding domain VPUCM_1277 PF16653 Saccharopine dehydrogenase C-terminal domain VPUCM_1278 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VPUCM_1281 PF00994 Probable molybdopterin binding domain VPUCM_1283 PF00268 Ribonucleotide reductase, small chain VPUCM_1284 PF02867 Ribonucleotide reductase, barrel domain VPUCM_1284 PF00317 Ribonucleotide reductase, all-alpha domain VPUCM_1284 PF03477 ATP cone domain VPUCM_1286 PF00521 DNA gyrase/topoisomerase IV, subunit A VPUCM_1286 PF03989 DNA gyrase C-terminal domain, beta-propeller VPUCM_1289 PF02335 Cytochrome c552 VPUCM_1291 PF13247 4Fe-4S dicluster domain VPUCM_1292 PF03916 Polysulphide reductase, NrfD VPUCM_1293 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VPUCM_1293 PF01578 Cytochrome C assembly protein VPUCM_1294 PF08534 Redoxin VPUCM_1295 PF03918 Cytochrome C biogenesis protein VPUCM_1297 PF00925 GTP cyclohydrolase II VPUCM_1302 PF03734 L,D-transpeptidase catalytic domain VPUCM_1302 PF01471 Putative peptidoglycan binding domain VPUCM_1303 PF05951 Bacterial protein of unknown function (DUF882) VPUCM_1304 PF00753 Metallo-beta-lactamase superfamily VPUCM_1307 PF03480 Bacterial extracellular solute-binding protein, family 7 VPUCM_1309 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VPUCM_1310 PF07730 Histidine kinase VPUCM_1310 PF17200 Single Cache domain 2 VPUCM_1311 PF00072 Response regulator receiver domain VPUCM_1311 PF00196 Bacterial regulatory proteins, luxR family VPUCM_1312 PF01047 MarR family VPUCM_1313 PF02028 BCCT, betaine/carnitine/choline family transporter VPUCM_1314 PF00672 HAMP domain VPUCM_1314 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPUCM_1318 PF00155 Aminotransferase class I and II VPUCM_1321 PF00155 Aminotransferase class I and II VPUCM_1321 PF00392 Bacterial regulatory proteins, gntR family VPUCM_1323 PF00152 tRNA synthetases class II (D, K and N) VPUCM_1323 PF01336 OB-fold nucleic acid binding domain VPUCM_1324 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPUCM_1324 PF02743 Cache domain VPUCM_1324 PF00672 HAMP domain VPUCM_1326 PF01242 6-pyruvoyl tetrahydropterin synthase VPUCM_1328 PF04940 Sensors of blue-light using FAD VPUCM_1328 PF00563 EAL domain VPUCM_1329 PF03313 Serine dehydratase alpha chain VPUCM_1329 PF03315 Serine dehydratase beta chain VPUCM_1330 PF03222 Tryptophan/tyrosine permease family VPUCM_1331 PF00293 NUDIX domain VPUCM_1333 PF00072 Response regulator receiver domain VPUCM_1333 PF00512 His Kinase A (phospho-acceptor) domain VPUCM_1333 PF09308 LuxQ, periplasmic VPUCM_1333 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_1334 PF00425 chorismate binding enzyme VPUCM_1334 PF04715 Anthranilate synthase component I, N terminal region VPUCM_1337 PF04317 YcjX-like family, DUF463 VPUCM_1338 PF05128 Domain of unknown function (DUF697) VPUCM_1339 PF00158 Sigma-54 interaction domain VPUCM_1339 PF18024 Helix-turn-helix domain VPUCM_1340 PF13302 Acetyltransferase (GNAT) domain VPUCM_1343 PF13495 Phage integrase, N-terminal SAM-like domain VPUCM_1343 PF00589 Phage integrase family VPUCM_1356 PF00857 Isochorismatase family VPUCM_1386 PF01810 LysE type translocator VPUCM_1390 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VPUCM_1401 PF12441 CopG antitoxin of type II toxin-antitoxin system VPUCM_1417 PF00583 Acetyltransferase (GNAT) family VPUCM_1426 PF13276 HTH-like domain VPUCM_1426 PF00665 Integrase core domain VPUCM_1426 PF13333 Integrase core domain VPUCM_1474 PF13737 Transposase DDE domain VPUCM_1483 PF13737 Transposase DDE domain VPUCM_1499 PF13737 Transposase DDE domain VPUCM_1505 PF13333 Integrase core domain VPUCM_1505 PF13276 HTH-like domain VPUCM_1505 PF00665 Integrase core domain VPUCM_1512 PF13439 Glycosyltransferase Family 4 VPUCM_1512 PF00534 Glycosyl transferases group 1 VPUCM_1513 PF00534 Glycosyl transferases group 1 VPUCM_1513 PF13439 Glycosyltransferase Family 4 VPUCM_1514 PF00158 Sigma-54 interaction domain VPUCM_1514 PF02954 Bacterial regulatory protein, Fis family VPUCM_1514 PF00072 Response regulator receiver domain VPUCM_1517 PF10531 SLBB domain VPUCM_1517 PF02563 Polysaccharide biosynthesis/export protein VPUCM_1519 PF01740 STAS domain VPUCM_1520 PF01068 ATP dependent DNA ligase domain VPUCM_1520 PF14743 DNA ligase OB-like domain VPUCM_1522 PF01554 MatE VPUCM_1523 PF00677 Lumazine binding domain VPUCM_1526 PF01339 CheB methylesterase VPUCM_1526 PF00072 Response regulator receiver domain VPUCM_1527 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_1527 PF05230 MASE2 domain VPUCM_1529 PF00877 NlpC/P60 family VPUCM_1530 PF17202 Single cache domain 3 VPUCM_1530 PF00672 HAMP domain VPUCM_1530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPUCM_1537 PF00480 ROK family VPUCM_1540 PF00300 Histidine phosphatase superfamily (branch 1) VPUCM_1544 PF00939 Sodium:sulfate symporter transmembrane region VPUCM_1545 PF00512 His Kinase A (phospho-acceptor) domain VPUCM_1545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_1545 PF00497 Bacterial extracellular solute-binding proteins, family 3 VPUCM_1546 PF00158 Sigma-54 interaction domain VPUCM_1546 PF02954 Bacterial regulatory protein, Fis family VPUCM_1546 PF00072 Response regulator receiver domain VPUCM_1547 PF00563 EAL domain VPUCM_1547 PF03707 Bacterial signalling protein N terminal repeat VPUCM_1547 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_1548 PF01966 HD domain VPUCM_1548 PF11871 Domain of unknown function (DUF3391) VPUCM_1549 PF01810 LysE type translocator VPUCM_1550 PF11230 Protein of unknown function (DUF3029) VPUCM_1551 PF04055 Radical SAM superfamily VPUCM_1553 PF03741 Integral membrane protein TerC family VPUCM_1556 PF01966 HD domain VPUCM_1558 PF00465 Iron-containing alcohol dehydrogenase VPUCM_1559 PF03222 Tryptophan/tyrosine permease family VPUCM_1563 PF00664 ABC transporter transmembrane region VPUCM_1563 PF00005 ABC transporter VPUCM_1564 PF00664 ABC transporter transmembrane region VPUCM_1564 PF00005 ABC transporter VPUCM_1569 PF00012 Hsp70 protein VPUCM_1570 PF00012 Hsp70 protein VPUCM_1572 PF17151 Periplasmic sensor domain VPUCM_1572 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_1578 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VPUCM_1578 PF01568 Molydopterin dinucleotide binding domain VPUCM_1578 PF00384 Molybdopterin oxidoreductase VPUCM_1579 PF13247 4Fe-4S dicluster domain VPUCM_1579 PF12800 4Fe-4S binding domain VPUCM_1580 PF04976 DMSO reductase anchor subunit (DmsC) VPUCM_1581 PF02613 Nitrate reductase delta subunit VPUCM_1583 PF02525 Flavodoxin-like fold VPUCM_1584 PF04408 Helicase associated domain (HA2) VPUCM_1584 PF00271 Helicase conserved C-terminal domain VPUCM_1584 PF11898 Domain of unknown function (DUF3418) VPUCM_1584 PF00270 DEAD/DEAH box helicase VPUCM_1584 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VPUCM_1587 PF02028 BCCT, betaine/carnitine/choline family transporter VPUCM_1589 PF02397 Bacterial sugar transferase VPUCM_1590 PF00535 Glycosyl transferase family 2 VPUCM_1591 PF13439 Glycosyltransferase Family 4 VPUCM_1591 PF00534 Glycosyl transferases group 1 VPUCM_1593 PF03453 MoeA N-terminal region (domain I and II) VPUCM_1593 PF03454 MoeA C-terminal region (domain IV) VPUCM_1593 PF00994 Probable molybdopterin binding domain VPUCM_1594 PF12804 MobA-like NTP transferase domain VPUCM_1595 PF00005 ABC transporter VPUCM_1595 PF08402 TOBE domain VPUCM_1596 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_1597 PF12849 PBP superfamily domain VPUCM_1598 PF02954 Bacterial regulatory protein, Fis family VPUCM_1598 PF00072 Response regulator receiver domain VPUCM_1598 PF00158 Sigma-54 interaction domain VPUCM_1599 PF00512 His Kinase A (phospho-acceptor) domain VPUCM_1599 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_1600 PF12848 ABC transporter VPUCM_1600 PF00005 ABC transporter VPUCM_1601 PF02634 FdhD/NarQ family VPUCM_1605 PF02613 Nitrate reductase delta subunit VPUCM_1607 PF01568 Molydopterin dinucleotide binding domain VPUCM_1607 PF00384 Molybdopterin oxidoreductase VPUCM_1607 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VPUCM_1608 PF13247 4Fe-4S dicluster domain VPUCM_1611 PF05593 RHS Repeat VPUCM_1611 PF03527 RHS protein VPUCM_1624 PF00909 Ammonium Transporter Family VPUCM_1626 PF02146 Sir2 family VPUCM_1627 PF13416 Bacterial extracellular solute-binding protein VPUCM_1628 PF13416 Bacterial extracellular solute-binding protein VPUCM_1629 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_1630 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_1631 PF08402 TOBE domain VPUCM_1631 PF00005 ABC transporter VPUCM_1635 PF01171 PP-loop family VPUCM_1636 PF00582 Universal stress protein family VPUCM_1637 PF13545 Crp-like helix-turn-helix domain VPUCM_1637 PF00027 Cyclic nucleotide-binding domain VPUCM_1640 PF00403 Heavy-metal-associated domain VPUCM_1642 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VPUCM_1642 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP VPUCM_1645 PF00115 Cytochrome C and Quinol oxidase polypeptide I VPUCM_1648 PF00072 Response regulator receiver domain VPUCM_1648 PF09308 LuxQ, periplasmic VPUCM_1648 PF00512 His Kinase A (phospho-acceptor) domain VPUCM_1648 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_1671 PF06303 MatP N-terminal domain VPUCM_1671 PF17414 MatP C-terminal ribbon-helix-helix domain VPUCM_1672 PF13654 AAA domain VPUCM_1672 PF05362 Lon protease (S16) C-terminal proteolytic domain VPUCM_1673 PF07977 FabA-like domain VPUCM_1677 PF10672 S-adenosylmethionine-dependent methyltransferase VPUCM_1677 PF02926 THUMP domain VPUCM_1677 PF01170 Putative RNA methylase family UPF0020 VPUCM_1678 PF07126 Cell-division protein ZapC VPUCM_1679 PF01180 Dihydroorotate dehydrogenase VPUCM_1680 PF05088 Bacterial NAD-glutamate dehydrogenase VPUCM_1681 PF01433 Peptidase family M1 domain VPUCM_1681 PF17432 Domain of unknown function (DUF3458_C) ARM repeats VPUCM_1681 PF11940 Domain of unknown function (DUF3458) Ig-like fold VPUCM_1683 PF17804 Tail specific protease N-terminal domain VPUCM_1683 PF00595 PDZ domain VPUCM_1683 PF03572 Peptidase family S41 VPUCM_1683 PF11818 C-terminal domain of tail specific protease (DUF3340) VPUCM_1684 PF04352 ProQ/FINO family VPUCM_1684 PF17516 ProQ C-terminal domain VPUCM_1685 PF13185 GAF domain VPUCM_1686 PF00664 ABC transporter transmembrane region VPUCM_1686 PF00005 ABC transporter VPUCM_1687 PF04403 Paraquat-inducible protein A VPUCM_1688 PF02470 MlaD protein VPUCM_1689 PF01189 16S rRNA methyltransferase RsmB/F VPUCM_1689 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF VPUCM_1689 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF VPUCM_1693 PF00793 DAHP synthetase I family VPUCM_1694 PF04461 Protein of unknown function (DUF520) VPUCM_1695 PF10414 Sirohaem synthase dimerisation region VPUCM_1695 PF14824 Sirohaem biosynthesis protein central VPUCM_1695 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VPUCM_1696 PF00497 Bacterial extracellular solute-binding proteins, family 3 VPUCM_1697 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_1698 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_1699 PF00005 ABC transporter VPUCM_1700 PF01027 Inhibitor of apoptosis-promoting Bax1 VPUCM_1702 PF04358 DsrC like protein VPUCM_1703 PF00708 Acylphosphatase VPUCM_1704 PF02743 Cache domain VPUCM_1704 PF00672 HAMP domain VPUCM_1704 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPUCM_1706 PF10672 S-adenosylmethionine-dependent methyltransferase VPUCM_1706 PF17785 PUA-like domain VPUCM_1711 PF05736 OprF membrane domain VPUCM_1711 PF00691 OmpA family VPUCM_1714 PF05736 OprF membrane domain VPUCM_1714 PF00691 OmpA family VPUCM_1716 PF17158 Membrane-associated sensor, integral membrane domain VPUCM_1716 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_1717 PF06508 Queuosine biosynthesis protein QueC VPUCM_1718 PF04055 Radical SAM superfamily VPUCM_1721 PF00089 Trypsin VPUCM_1722 PF00583 Acetyltransferase (GNAT) family VPUCM_1723 PF13193 AMP-binding enzyme C-terminal domain VPUCM_1723 PF00501 AMP-binding enzyme VPUCM_1723 PF16177 Acetyl-coenzyme A synthetase N-terminus VPUCM_1724 PF04303 PrpF protein VPUCM_1725 PF00330 Aconitase family (aconitate hydratase) VPUCM_1725 PF00694 Aconitase C-terminal domain VPUCM_1727 PF00285 Citrate synthase, C-terminal domain VPUCM_1734 PF01970 Tripartite tricarboxylate transporter TctA family VPUCM_1735 PF01925 Sulfite exporter TauE/SafE VPUCM_1737 PF05844 YopD protein VPUCM_1739 PF07720 Tetratricopeptide repeat VPUCM_1740 PF04792 V antigen (LcrV) protein VPUCM_1741 PF07216 LcrG protein VPUCM_1742 PF09621 Type III secretion system regulator (LcrR) VPUCM_1743 PF00771 FHIPEP family VPUCM_1747 PF09059 TyeA VPUCM_1748 PF07201 HrpJ-like domain VPUCM_1749 PF02874 ATP synthase alpha/beta family, beta-barrel domain VPUCM_1749 PF18269 T3SS EscN ATPase C-terminal domain VPUCM_1749 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VPUCM_1752 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VPUCM_1753 PF00813 FliP family VPUCM_1754 PF01313 Bacterial export proteins, family 3 VPUCM_1755 PF01311 Bacterial export proteins, family 1 VPUCM_1756 PF01312 FlhB HrpN YscU SpaS Family VPUCM_1757 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_1757 PF03466 LysR substrate binding domain VPUCM_1758 PF12146 Serine aminopeptidase, S33 VPUCM_1759 PF12146 Serine aminopeptidase, S33 VPUCM_1765 PF02661 Fic/DOC family VPUCM_1767 PF02108 Flagellar assembly protein FliH VPUCM_1769 PF01514 Secretory protein of YscJ/FliF family VPUCM_1770 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI VPUCM_1772 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) VPUCM_1773 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF VPUCM_1775 PF16697 Inner membrane component of T3SS, cytoplasmic domain VPUCM_1775 PF16693 Inner membrane component of T3SS, periplasmic domain VPUCM_1779 PF12833 Helix-turn-helix domain VPUCM_1783 PF00171 Aldehyde dehydrogenase family VPUCM_1784 PF00158 Sigma-54 interaction domain VPUCM_1784 PF01590 GAF domain VPUCM_1784 PF02954 Bacterial regulatory protein, Fis family VPUCM_1788 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain VPUCM_1788 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VPUCM_1789 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VPUCM_1790 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain VPUCM_1790 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain VPUCM_1791 PF00072 Response regulator receiver domain VPUCM_1791 PF12431 Transcriptional regulator VPUCM_1792 PF00989 PAS fold VPUCM_1792 PF17203 Single cache domain 3 VPUCM_1792 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_1792 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VPUCM_1794 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VPUCM_1797 PF03150 Di-haem cytochrome c peroxidase VPUCM_1797 PF00034 Cytochrome c VPUCM_1800 PF13840 ACT domain VPUCM_1800 PF00696 Amino acid kinase family VPUCM_1801 PF06339 Ectoine synthase VPUCM_1802 PF00202 Aminotransferase class-III VPUCM_1803 PF00583 Acetyltransferase (GNAT) family VPUCM_1804 PF02028 BCCT, betaine/carnitine/choline family transporter VPUCM_1807 PF00571 CBS domain VPUCM_1807 PF00005 ABC transporter VPUCM_1808 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_1809 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VPUCM_1811 PF00501 AMP-binding enzyme VPUCM_1815 PF00486 Transcriptional regulatory protein, C terminal VPUCM_1815 PF00072 Response regulator receiver domain VPUCM_1816 PF00512 His Kinase A (phospho-acceptor) domain VPUCM_1816 PF08521 Two-component sensor kinase N-terminal VPUCM_1816 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_1817 PF00884 Sulfatase VPUCM_1822 PF01235 Sodium:alanine symporter family VPUCM_1824 PF01810 LysE type translocator VPUCM_1825 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VPUCM_1826 PF03279 Bacterial lipid A biosynthesis acyltransferase VPUCM_1828 PF13520 Amino acid permease VPUCM_1830 PF04204 Homoserine O-succinyltransferase VPUCM_1834 PF03707 Bacterial signalling protein N terminal repeat VPUCM_1834 PF00563 EAL domain VPUCM_1834 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_1835 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VPUCM_1835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_1835 PF00072 Response regulator receiver domain VPUCM_1835 PF00512 His Kinase A (phospho-acceptor) domain VPUCM_1835 PF01627 Hpt domain VPUCM_1835 PF00672 HAMP domain VPUCM_1838 PF00132 Bacterial transferase hexapeptide (six repeats) VPUCM_1838 PF12464 Maltose acetyltransferase VPUCM_1841 PF01928 CYTH domain VPUCM_1843 PF04237 YjbR VPUCM_1844 PF01047 MarR family VPUCM_1846 PF12833 Helix-turn-helix domain VPUCM_1847 PF02272 DHHA1 domain VPUCM_1847 PF01411 tRNA synthetases class II (A) VPUCM_1847 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VPUCM_1850 PF00563 EAL domain VPUCM_1850 PF00196 Bacterial regulatory proteins, luxR family VPUCM_1851 PF01368 DHH family VPUCM_1851 PF02833 DHHA2 domain VPUCM_1852 PF00202 Aminotransferase class-III VPUCM_1853 PF00171 Aldehyde dehydrogenase family VPUCM_1854 PF04371 Porphyromonas-type peptidyl-arginine deiminase VPUCM_1855 PF00795 Carbon-nitrogen hydrolase VPUCM_1856 PF01266 FAD dependent oxidoreductase VPUCM_1857 PF00171 Aldehyde dehydrogenase family VPUCM_1858 PF01381 Helix-turn-helix VPUCM_1858 PF07883 Cupin domain VPUCM_1859 PF07722 Peptidase C26 VPUCM_1860 PF00120 Glutamine synthetase, catalytic domain VPUCM_1861 PF03553 Na+/H+ antiporter family VPUCM_1865 PF13302 Acetyltransferase (GNAT) domain VPUCM_1866 PF01810 LysE type translocator VPUCM_1872 PF14497 Glutathione S-transferase, C-terminal domain VPUCM_1872 PF02798 Glutathione S-transferase, N-terminal domain VPUCM_1874 PF04209 homogentisate 1,2-dioxygenase VPUCM_1875 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VPUCM_1877 PF01546 Peptidase family M20/M25/M40 VPUCM_1877 PF07687 Peptidase dimerisation domain VPUCM_1878 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VPUCM_1879 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_1880 PF12911 N-terminal TM domain of oligopeptide transport permease C VPUCM_1880 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_1881 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VPUCM_1881 PF00005 ABC transporter VPUCM_1882 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VPUCM_1882 PF00005 ABC transporter VPUCM_1884 PF01752 Collagenase VPUCM_1884 PF08453 Peptidase family M9 N-terminal VPUCM_1886 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_1887 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_1888 PF08402 TOBE domain VPUCM_1888 PF00005 ABC transporter VPUCM_1889 PF00701 Dihydrodipicolinate synthetase family VPUCM_1890 PF02423 Ornithine cyclodeaminase/mu-crystallin family VPUCM_1893 PF05544 Proline racemase VPUCM_1894 PF00171 Aldehyde dehydrogenase family VPUCM_1895 PF00392 Bacterial regulatory proteins, gntR family VPUCM_1899 PF05971 RNA methyltransferase VPUCM_1900 PF01863 Protein of unknown function DUF45 VPUCM_1902 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_1902 PF03466 LysR substrate binding domain VPUCM_1906 PF00005 ABC transporter VPUCM_1907 PF01032 FecCD transport family VPUCM_1908 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VPUCM_1910 PF00300 Histidine phosphatase superfamily (branch 1) VPUCM_1911 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase VPUCM_1912 PF02654 Cobalamin-5-phosphate synthase VPUCM_1913 PF02277 Phosphoribosyltransferase VPUCM_1915 PF13460 NAD(P)H-binding VPUCM_1917 PF00929 Exonuclease VPUCM_1917 PF08411 Exonuclease C-terminal VPUCM_1918 PF03788 LrgA family VPUCM_1919 PF04172 LrgB-like family VPUCM_1920 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VPUCM_1920 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region VPUCM_1921 PF02222 ATP-grasp domain VPUCM_1922 PF05724 Thiopurine S-methyltransferase (TPMT) VPUCM_1924 PF00216 Bacterial DNA-binding protein VPUCM_1926 PF01588 Putative tRNA binding domain VPUCM_1926 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain VPUCM_1926 PF03147 Ferredoxin-fold anticodon binding domain VPUCM_1926 PF03483 B3/4 domain VPUCM_1926 PF03484 tRNA synthetase B5 domain VPUCM_1927 PF01409 tRNA synthetases class II core domain (F) VPUCM_1927 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VPUCM_1928 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_1928 PF17158 Membrane-associated sensor, integral membrane domain VPUCM_1934 PF01906 Putative heavy-metal-binding VPUCM_1935 PF00453 Ribosomal protein L20 VPUCM_1936 PF01632 Ribosomal protein L35 VPUCM_1937 PF05198 Translation initiation factor IF-3, N-terminal domain VPUCM_1937 PF00707 Translation initiation factor IF-3, C-terminal domain VPUCM_1938 PF02824 TGS domain VPUCM_1938 PF03129 Anticodon binding domain VPUCM_1938 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VPUCM_1938 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VPUCM_1941 PF07702 UTRA domain VPUCM_1941 PF00392 Bacterial regulatory proteins, gntR family VPUCM_1942 PF01979 Amidohydrolase family VPUCM_1943 PF00491 Arginase family VPUCM_1944 PF01175 Urocanase Rossmann-like domain VPUCM_1944 PF17392 Urocanase C-terminal domain VPUCM_1944 PF17391 Urocanase N-terminal domain VPUCM_1945 PF00221 Aromatic amino acid lyase VPUCM_1947 PF04191 Phospholipid methyltransferase VPUCM_1948 PF02913 FAD linked oxidases, C-terminal domain VPUCM_1948 PF13183 4Fe-4S dicluster domain VPUCM_1948 PF01565 FAD binding domain VPUCM_1951 PF05736 OprF membrane domain VPUCM_1951 PF00691 OmpA family VPUCM_1955 PF01259 SAICAR synthetase VPUCM_1956 PF09423 PhoD-like phosphatase VPUCM_1956 PF16655 PhoD-like phosphatase, N-terminal domain VPUCM_1958 PF02253 Phospholipase A1 VPUCM_1959 PF00270 DEAD/DEAH box helicase VPUCM_1959 PF04408 Helicase associated domain (HA2) VPUCM_1959 PF00271 Helicase conserved C-terminal domain VPUCM_1959 PF08482 ATP-dependent helicase C-terminal VPUCM_1960 PF03949 Malic enzyme, NAD binding domain VPUCM_1960 PF00390 Malic enzyme, N-terminal domain VPUCM_1961 PF02698 DUF218 domain VPUCM_1962 PF00939 Sodium:sulfate symporter transmembrane region VPUCM_1963 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_1963 PF00072 Response regulator receiver domain VPUCM_1965 PF00266 Aminotransferase class-V VPUCM_1967 PF07992 Pyridine nucleotide-disulphide oxidoreductase VPUCM_1968 PF00005 ABC transporter VPUCM_1968 PF00664 ABC transporter transmembrane region VPUCM_1969 PF00005 ABC transporter VPUCM_1969 PF00664 ABC transporter transmembrane region VPUCM_1970 PF00291 Pyridoxal-phosphate dependent enzyme VPUCM_1971 PF00266 Aminotransferase class-V VPUCM_1973 PF00512 His Kinase A (phospho-acceptor) domain VPUCM_1973 PF00497 Bacterial extracellular solute-binding proteins, family 3 VPUCM_1973 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_1976 PF04994 TfoX C-terminal domain VPUCM_1976 PF04993 TfoX N-terminal domain VPUCM_1979 PF03956 Lysine exporter LysO VPUCM_1981 PF00282 Pyridoxal-dependent decarboxylase conserved domain VPUCM_1982 PF01380 SIS domain VPUCM_1982 PF01418 Helix-turn-helix domain, rpiR family VPUCM_1983 PF00465 Iron-containing alcohol dehydrogenase VPUCM_1984 PF00462 Glutaredoxin VPUCM_1985 PF02080 TrkA-C domain VPUCM_1985 PF06826 Predicted Permease Membrane Region VPUCM_1986 PF07055 Enoyl reductase FAD binding domain VPUCM_1986 PF12241 Trans-2-enoyl-CoA reductase catalytic region VPUCM_1986 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VPUCM_1987 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VPUCM_1987 PF09317 Domain of unknown function (DUF1974) VPUCM_1987 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VPUCM_1987 PF02770 Acyl-CoA dehydrogenase, middle domain VPUCM_1988 PF00440 Bacterial regulatory proteins, tetR family VPUCM_1988 PF16295 Tetracyclin repressor-like, C-terminal domain VPUCM_1989 PF06965 Na+/H+ antiporter 1 VPUCM_1992 PF00005 ABC transporter VPUCM_1993 PF01554 MatE VPUCM_1994 PF13460 NAD(P)H-binding VPUCM_1994 PF11066 Protein of unknown function (DUF2867) VPUCM_1995 PF03264 NapC/NirT cytochrome c family, N-terminal region VPUCM_1998 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) VPUCM_20003 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VPUCM_20003 PF00005 ABC transporter VPUCM_20004 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VPUCM_20004 PF00005 ABC transporter VPUCM_20006 PF00925 GTP cyclohydrolase II VPUCM_20006 PF08719 Domain of unknown function (DUF1768) VPUCM_20008 PF00512 His Kinase A (phospho-acceptor) domain VPUCM_20008 PF01627 Hpt domain VPUCM_20008 PF00072 Response regulator receiver domain VPUCM_20008 PF00672 HAMP domain VPUCM_20008 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_20008 PF17149 Periplasmic sensor domain found in signal transduction proteins VPUCM_2001 PF07690 Major Facilitator Superfamily VPUCM_20010 PF01709 Transcriptional regulator VPUCM_20011 PF01098 Cell cycle protein VPUCM_20014 PF00005 ABC transporter VPUCM_20018 PF13492 GAF domain VPUCM_20018 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_20018 PF06580 Histidine kinase VPUCM_20018 PF07694 5TMR of 5TMR-LYT VPUCM_20019 PF00072 Response regulator receiver domain VPUCM_20019 PF04397 LytTr DNA-binding domain VPUCM_2002 PF01479 S4 domain VPUCM_2002 PF00849 RNA pseudouridylate synthase VPUCM_20021 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VPUCM_20022 PF17200 Single Cache domain 2 VPUCM_20022 PF00672 HAMP domain VPUCM_20022 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPUCM_20025 PF00132 Bacterial transferase hexapeptide (six repeats) VPUCM_20026 PF03616 Sodium/glutamate symporter VPUCM_20028 PF00005 ABC transporter VPUCM_20029 PF00392 Bacterial regulatory proteins, gntR family VPUCM_20029 PF00155 Aminotransferase class I and II VPUCM_2003 PF04851 Type III restriction enzyme, res subunit VPUCM_2003 PF00271 Helicase conserved C-terminal domain VPUCM_20030 PF03616 Sodium/glutamate symporter VPUCM_20032 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VPUCM_20035 PF03466 LysR substrate binding domain VPUCM_20035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_20036 PF02678 Pirin VPUCM_20036 PF17954 Quercetinase C-terminal cupin domain VPUCM_20037 PF07681 DoxX VPUCM_20039 PF06029 AlkA N-terminal domain VPUCM_20039 PF00730 HhH-GPD superfamily base excision DNA repair protein VPUCM_20040 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VPUCM_20040 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain VPUCM_20042 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 VPUCM_20044 PF03600 Citrate transporter VPUCM_20049 PF08329 Chitinase A, N-terminal domain VPUCM_20049 PF00704 Glycosyl hydrolases family 18 VPUCM_2005 PF00072 Response regulator receiver domain VPUCM_2005 PF00486 Transcriptional regulatory protein, C terminal VPUCM_20051 PF06865 Pyrimidine/purine nucleoside phosphorylase VPUCM_20053 PF03707 Bacterial signalling protein N terminal repeat VPUCM_20053 PF00563 EAL domain VPUCM_20053 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_20055 PF01554 MatE VPUCM_20056 PF00849 RNA pseudouridylate synthase VPUCM_20059 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_20059 PF03466 LysR substrate binding domain VPUCM_2006 PF00512 His Kinase A (phospho-acceptor) domain VPUCM_2006 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_2006 PF00672 HAMP domain VPUCM_20062 PF17152 Periplasmic sensor domain VPUCM_20062 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_20064 PF00756 Putative esterase VPUCM_20065 PF00107 Zinc-binding dehydrogenase VPUCM_20065 PF08240 Alcohol dehydrogenase GroES-like domain VPUCM_20066 PF00797 N-acetyltransferase VPUCM_20067 PF03466 LysR substrate binding domain VPUCM_20067 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_2007 PF01386 Ribosomal L25p family VPUCM_20070 PF09339 IclR helix-turn-helix domain VPUCM_20070 PF01614 Bacterial transcriptional regulator VPUCM_20072 PF10688 Bacterial inner membrane protein VPUCM_20073 PF07883 Cupin domain VPUCM_20076 PF00294 pfkB family carbohydrate kinase VPUCM_20077 PF01081 KDPG and KHG aldolase VPUCM_20080 PF13229 Right handed beta helix region VPUCM_20081 PF00474 Sodium:solute symporter family VPUCM_20082 PF14583 Oligogalacturonate lyase VPUCM_20083 PF04954 Siderophore-interacting protein VPUCM_20083 PF08021 Siderophore-interacting FAD-binding domain VPUCM_20084 PF01810 LysE type translocator VPUCM_20085 PF01037 Lrp/AsnC ligand binding domain VPUCM_20086 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading VPUCM_20086 PF18416 N-acetylglucosamine binding protein domain 2 VPUCM_20089 PF13599 Pentapeptide repeats (9 copies) VPUCM_20090 PF03922 OmpW family VPUCM_20091 PF13533 Biotin-lipoyl like VPUCM_20092 PF07690 Major Facilitator Superfamily VPUCM_20094 PF12706 Beta-lactamase superfamily domain VPUCM_20096 PF01204 Trehalase VPUCM_20097 PF01661 Macro domain VPUCM_20098 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VPUCM_20099 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_20099 PF03466 LysR substrate binding domain VPUCM_2010 PF02872 5'-nucleotidase, C-terminal domain VPUCM_2010 PF00149 Calcineurin-like phosphoesterase VPUCM_20101 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_20101 PF03466 LysR substrate binding domain VPUCM_20104 PF13419 Haloacid dehalogenase-like hydrolase VPUCM_20110 PF05651 Putative sugar diacid recognition VPUCM_20110 PF13556 PucR C-terminal helix-turn-helix domain VPUCM_20110 PF17853 GGDEF-like domain VPUCM_20111 PF02447 GntP family permease VPUCM_20112 PF02595 Glycerate kinase family VPUCM_20113 PF00155 Aminotransferase class I and II VPUCM_20113 PF00392 Bacterial regulatory proteins, gntR family VPUCM_20117 PF00583 Acetyltransferase (GNAT) family VPUCM_2012 PF13333 Integrase core domain VPUCM_2012 PF00665 Integrase core domain VPUCM_2012 PF13276 HTH-like domain VPUCM_20122 PF03264 NapC/NirT cytochrome c family, N-terminal region VPUCM_20123 PF18364 Molybdopterin oxidoreductase N-terminal domain VPUCM_20123 PF01568 Molydopterin dinucleotide binding domain VPUCM_20123 PF00384 Molybdopterin oxidoreductase VPUCM_20125 PF02581 Thiamine monophosphate synthase VPUCM_20126 PF02110 Hydroxyethylthiazole kinase family VPUCM_20127 PF03070 TENA/THI-4/PQQC family VPUCM_20128 PF09084 NMT1/THI5 like VPUCM_20129 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_20130 PF00005 ABC transporter VPUCM_20131 PF08543 Phosphomethylpyrimidine kinase VPUCM_20132 PF01523 Putative modulator of DNA gyrase VPUCM_20133 PF01523 Putative modulator of DNA gyrase VPUCM_20134 PF04013 Putative SAM-dependent RNA methyltransferase VPUCM_20136 PF10928 Protein of unknown function (DUF2810) VPUCM_20137 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VPUCM_20137 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VPUCM_20139 PF03009 Glycerophosphoryl diester phosphodiesterase family VPUCM_2014 PF00072 Response regulator receiver domain VPUCM_2014 PF00196 Bacterial regulatory proteins, luxR family VPUCM_20141 PF00486 Transcriptional regulatory protein, C terminal VPUCM_20141 PF00072 Response regulator receiver domain VPUCM_20142 PF00672 HAMP domain VPUCM_20142 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_20142 PF00512 His Kinase A (phospho-acceptor) domain VPUCM_20142 PF16750 Sensor domain of 2-component histidine kinase VPUCM_20143 PF07715 TonB-dependent Receptor Plug Domain VPUCM_20143 PF00593 TonB dependent receptor VPUCM_20145 PF01618 MotA/TolQ/ExbB proton channel family VPUCM_20146 PF01618 MotA/TolQ/ExbB proton channel family VPUCM_20147 PF02472 Biopolymer transport protein ExbD/TolR VPUCM_2015 PF00512 His Kinase A (phospho-acceptor) domain VPUCM_2015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_20156 PF01297 Zinc-uptake complex component A periplasmic VPUCM_20157 PF00005 ABC transporter VPUCM_20158 PF00950 ABC 3 transport family VPUCM_20161 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VPUCM_20161 PF00326 Prolyl oligopeptidase family VPUCM_20163 PF07690 Major Facilitator Superfamily VPUCM_20164 PF00491 Arginase family VPUCM_20165 PF17810 Arginine decarboxylase helical bundle domain VPUCM_20165 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VPUCM_20165 PF17944 Arginine decarboxylase C-terminal helical extension VPUCM_20166 PF00753 Metallo-beta-lactamase superfamily VPUCM_20167 PF18030 RimK PreATP-grasp domain VPUCM_20167 PF08443 RimK-like ATP-grasp domain VPUCM_20168 PF18030 RimK PreATP-grasp domain VPUCM_20168 PF08443 RimK-like ATP-grasp domain VPUCM_2017 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VPUCM_2017 PF07992 Pyridine nucleotide-disulphide oxidoreductase VPUCM_20170 PF03466 LysR substrate binding domain VPUCM_20170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_20175 PF00232 Glycosyl hydrolase family 1 VPUCM_20177 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_20177 PF02743 Cache domain VPUCM_20177 PF00512 His Kinase A (phospho-acceptor) domain VPUCM_20178 PF00158 Sigma-54 interaction domain VPUCM_20178 PF00072 Response regulator receiver domain VPUCM_20178 PF02954 Bacterial regulatory protein, Fis family VPUCM_20179 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_20179 PF05230 MASE2 domain VPUCM_20180 PF05525 Branched-chain amino acid transport protein VPUCM_20183 PF01266 FAD dependent oxidoreductase VPUCM_20185 PF01212 Beta-eliminating lyase VPUCM_20188 PF01773 Na+ dependent nucleoside transporter N-terminus VPUCM_20188 PF07670 Nucleoside recognition VPUCM_20188 PF07662 Na+ dependent nucleoside transporter C-terminus VPUCM_2019 PF09335 SNARE associated Golgi protein VPUCM_20190 PF13532 2OG-Fe(II) oxygenase superfamily VPUCM_20191 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_20191 PF05230 MASE2 domain VPUCM_20192 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPUCM_20192 PF12729 Four helix bundle sensory module for signal transduction VPUCM_20192 PF00672 HAMP domain VPUCM_20195 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_20196 PF00875 DNA photolyase VPUCM_20196 PF03441 FAD binding domain of DNA photolyase VPUCM_20197 PF04244 Deoxyribodipyrimidine photo-lyase-related protein VPUCM_2020 PF13416 Bacterial extracellular solute-binding protein VPUCM_20200 PF01625 Peptide methionine sulfoxide reductase VPUCM_20200 PF01641 SelR domain VPUCM_20201 PF02566 OsmC-like protein VPUCM_20202 PF14602 Hexapeptide repeat of succinyl-transferase VPUCM_20202 PF12464 Maltose acetyltransferase VPUCM_20209 PF03466 LysR substrate binding domain VPUCM_20209 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_2021 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_20210 PF13419 Haloacid dehalogenase-like hydrolase VPUCM_20213 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VPUCM_20214 PF00194 Eukaryotic-type carbonic anhydrase VPUCM_20215 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VPUCM_20216 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VPUCM_20217 PF02687 FtsX-like permease family VPUCM_20217 PF00005 ABC transporter VPUCM_20217 PF12704 MacB-like periplasmic core domain VPUCM_20218 PF02321 Outer membrane efflux protein VPUCM_20219 PF00657 GDSL-like Lipase/Acylhydrolase VPUCM_2022 PF00005 ABC transporter VPUCM_20222 PF03611 PTS system sugar-specific permease component VPUCM_20224 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VPUCM_20225 PF00356 Bacterial regulatory proteins, lacI family VPUCM_20226 PF13419 Haloacid dehalogenase-like hydrolase VPUCM_20228 PF00266 Aminotransferase class-V VPUCM_2023 PF01066 CDP-alcohol phosphatidyltransferase VPUCM_20231 PF00005 ABC transporter VPUCM_20232 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_20233 PF07702 UTRA domain VPUCM_20233 PF00392 Bacterial regulatory proteins, gntR family VPUCM_20236 PF04393 Protein of unknown function (DUF535) VPUCM_20237 PF01266 FAD dependent oxidoreductase VPUCM_20238 PF18027 Cytosolic carboxypeptidase N-terminal domain VPUCM_20238 PF00246 Zinc carboxypeptidase VPUCM_20239 PF01389 OmpA-like transmembrane domain VPUCM_20239 PF00691 OmpA family VPUCM_20240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_20240 PF03466 LysR substrate binding domain VPUCM_20242 PF03466 LysR substrate binding domain VPUCM_20242 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_20244 PF00854 POT family VPUCM_20246 PF03313 Serine dehydratase alpha chain VPUCM_20246 PF03315 Serine dehydratase beta chain VPUCM_2025 PF00158 Sigma-54 interaction domain VPUCM_2025 PF01590 GAF domain VPUCM_20250 PF00133 tRNA synthetases class I (I, L, M and V) VPUCM_20250 PF08264 Anticodon-binding domain of tRNA VPUCM_20251 PF01464 Transglycosylase SLT domain VPUCM_20255 PF00460 Flagella basal body rod protein VPUCM_20256 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VPUCM_20256 PF00460 Flagella basal body rod protein VPUCM_20257 PF13861 FlgD Tudor-like domain VPUCM_20257 PF13860 FlgD Ig-like domain VPUCM_20257 PF03963 Flagellar hook capping protein - N-terminal region VPUCM_20258 PF07559 Flagellar basal body protein FlaE VPUCM_20258 PF00460 Flagella basal body rod protein VPUCM_20258 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VPUCM_20259 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VPUCM_20259 PF00460 Flagella basal body rod protein VPUCM_2026 PF03063 Prismane/CO dehydrogenase family VPUCM_20260 PF00460 Flagella basal body rod protein VPUCM_20260 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VPUCM_20261 PF02107 Flagellar L-ring protein VPUCM_20262 PF02119 Flagellar P-ring protein VPUCM_20263 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VPUCM_20263 PF10135 Rod binding protein VPUCM_20264 PF00460 Flagella basal body rod protein VPUCM_20264 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VPUCM_20269 PF01070 FMN-dependent dehydrogenase VPUCM_2027 PF00970 Oxidoreductase FAD-binding domain VPUCM_2027 PF00175 Oxidoreductase NAD-binding domain VPUCM_2027 PF00111 2Fe-2S iron-sulfur cluster binding domain VPUCM_20273 PF00581 Rhodanese-like domain VPUCM_20274 PF00166 Chaperonin 10 Kd subunit VPUCM_20275 PF00118 TCP-1/cpn60 chaperonin family VPUCM_20277 PF01810 LysE type translocator VPUCM_20278 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_20278 PF03466 LysR substrate binding domain VPUCM_20281 PF08359 YsiA-like protein, C-terminal region VPUCM_20281 PF00440 Bacterial regulatory proteins, tetR family VPUCM_20284 PF00149 Calcineurin-like phosphoesterase VPUCM_20284 PF02872 5'-nucleotidase, C-terminal domain VPUCM_20285 PF03060 Nitronate monooxygenase VPUCM_20288 PF01641 SelR domain VPUCM_20288 PF01625 Peptide methionine sulfoxide reductase VPUCM_20289 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VPUCM_2029 PF00849 RNA pseudouridylate synthase VPUCM_20290 PF00455 DeoR C terminal sensor domain VPUCM_20290 PF08220 DeoR-like helix-turn-helix domain VPUCM_20292 PF06628 Catalase-related immune-responsive VPUCM_20292 PF00199 Catalase VPUCM_20294 PF00857 Isochorismatase family VPUCM_20297 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family VPUCM_20297 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain VPUCM_2030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPUCM_2030 PF00672 HAMP domain VPUCM_2030 PF12729 Four helix bundle sensory module for signal transduction VPUCM_20301 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_20301 PF03466 LysR substrate binding domain VPUCM_20303 PF01389 OmpA-like transmembrane domain VPUCM_20303 PF00691 OmpA family VPUCM_20305 PF06629 MltA-interacting protein MipA VPUCM_20306 PF17185 NlpE C-terminal OB domain VPUCM_20306 PF04170 NlpE N-terminal domain VPUCM_20307 PF02001 Protein of unknown function DUF134 VPUCM_2031 PF00209 Sodium:neurotransmitter symporter family VPUCM_20312 PF03764 Elongation factor G, domain IV VPUCM_20312 PF14492 Elongation Factor G, domain II VPUCM_20312 PF03144 Elongation factor Tu domain 2 VPUCM_20312 PF00009 Elongation factor Tu GTP binding domain VPUCM_20312 PF00679 Elongation factor G C-terminus VPUCM_20313 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain VPUCM_20313 PF13378 Enolase C-terminal domain-like VPUCM_20315 PF03466 LysR substrate binding domain VPUCM_20315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_20318 PF00376 MerR family regulatory protein VPUCM_20318 PF09278 MerR, DNA binding VPUCM_2032 PF13396 Phospholipase_D-nuclease N-terminal VPUCM_2032 PF13091 PLD-like domain VPUCM_20324 PF13091 PLD-like domain VPUCM_20325 PF13533 Biotin-lipoyl like VPUCM_20326 PF00873 AcrB/AcrD/AcrF family VPUCM_2033 PF01053 Cys/Met metabolism PLP-dependent enzyme VPUCM_20334 PF08402 TOBE domain VPUCM_20334 PF00005 ABC transporter VPUCM_20339 PF00392 Bacterial regulatory proteins, gntR family VPUCM_20339 PF07702 UTRA domain VPUCM_2034 PF00561 alpha/beta hydrolase fold VPUCM_20340 PF02028 BCCT, betaine/carnitine/choline family transporter VPUCM_20341 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 VPUCM_20341 PF00703 Glycosyl hydrolases family 2 VPUCM_20341 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VPUCM_20341 PF02837 Glycosyl hydrolases family 2, sugar binding domain VPUCM_20342 PF00196 Bacterial regulatory proteins, luxR family VPUCM_20344 PF07694 5TMR of 5TMR-LYT VPUCM_20344 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_20347 PF00873 AcrB/AcrD/AcrF family VPUCM_20348 PF13533 Biotin-lipoyl like VPUCM_20349 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_20349 PF03466 LysR substrate binding domain VPUCM_2035 PF03280 Proteobacterial lipase chaperone protein VPUCM_20351 PF13416 Bacterial extracellular solute-binding protein VPUCM_20352 PF00579 tRNA synthetases class I (W and Y) VPUCM_20356 PF02896 PEP-utilising enzyme, TIM barrel domain VPUCM_20356 PF00391 PEP-utilising enzyme, mobile domain VPUCM_20356 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain VPUCM_20357 PF03618 Kinase/pyrophosphorylase VPUCM_20358 PF17763 Glutaminase/Asparaginase C-terminal domain VPUCM_20358 PF00710 Asparaginase, N-terminal VPUCM_2036 PF03352 Methyladenine glycosylase VPUCM_20360 PF03466 LysR substrate binding domain VPUCM_20360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_20363 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) VPUCM_20365 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term VPUCM_20365 PF12833 Helix-turn-helix domain VPUCM_20368 PF08240 Alcohol dehydrogenase GroES-like domain VPUCM_20368 PF00107 Zinc-binding dehydrogenase VPUCM_20369 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VPUCM_2037 PF00873 AcrB/AcrD/AcrF family VPUCM_20371 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_20371 PF03466 LysR substrate binding domain VPUCM_20372 PF03466 LysR substrate binding domain VPUCM_20372 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_20374 PF00271 Helicase conserved C-terminal domain VPUCM_20374 PF00270 DEAD/DEAH box helicase VPUCM_20379 PF00155 Aminotransferase class I and II VPUCM_2038 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VPUCM_20380 PF01497 Periplasmic binding protein VPUCM_20380 PF12833 Helix-turn-helix domain VPUCM_2039 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VPUCM_20394 PF01872 RibD C-terminal domain VPUCM_20395 PF02909 Tetracyclin repressor-like, C-terminal domain VPUCM_20395 PF00440 Bacterial regulatory proteins, tetR family VPUCM_20396 PF02798 Glutathione S-transferase, N-terminal domain VPUCM_20398 PF07943 Penicillin-binding protein 5, C-terminal domain VPUCM_20398 PF00768 D-alanyl-D-alanine carboxypeptidase VPUCM_2040 PF04024 PspC domain VPUCM_20401 PF08534 Redoxin VPUCM_20401 PF00462 Glutaredoxin VPUCM_20402 PF00962 Adenosine/AMP deaminase VPUCM_20404 PF00313 'Cold-shock' DNA-binding domain VPUCM_20405 PF02678 Pirin VPUCM_20405 PF05726 Pirin C-terminal cupin domain VPUCM_20406 PF01734 Patatin-like phospholipase VPUCM_20408 PF01047 MarR family VPUCM_2041 PF06667 Phage shock protein B VPUCM_20416 PF08019 Phosphoethanolamine transferase EptA/EptB VPUCM_20416 PF00884 Sulfatase VPUCM_20417 PF01219 Prokaryotic diacylglycerol kinase VPUCM_20419 PF00672 HAMP domain VPUCM_20419 PF00512 His Kinase A (phospho-acceptor) domain VPUCM_20419 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_2042 PF04012 PspA/IM30 family VPUCM_20420 PF00486 Transcriptional regulatory protein, C terminal VPUCM_20420 PF00072 Response regulator receiver domain VPUCM_20421 PF00106 short chain dehydrogenase VPUCM_20424 PF01323 DSBA-like thioredoxin domain VPUCM_20427 PF00255 Glutathione peroxidase VPUCM_20428 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VPUCM_2043 PF00158 Sigma-54 interaction domain VPUCM_2043 PF02954 Bacterial regulatory protein, Fis family VPUCM_20430 PF07690 Major Facilitator Superfamily VPUCM_20432 PF01966 HD domain VPUCM_20434 PF07969 Amidohydrolase family VPUCM_20435 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin VPUCM_20437 PF00571 CBS domain VPUCM_20437 PF01769 Divalent cation transporter VPUCM_20437 PF03448 MgtE intracellular N domain VPUCM_20438 PF03109 ABC1 family VPUCM_2044 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VPUCM_20440 PF00155 Aminotransferase class I and II VPUCM_20440 PF00392 Bacterial regulatory proteins, gntR family VPUCM_20441 PF13520 Amino acid permease VPUCM_20442 PF13404 AsnC-type helix-turn-helix domain VPUCM_20442 PF01037 Lrp/AsnC ligand binding domain VPUCM_20443 PF03466 LysR substrate binding domain VPUCM_20443 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_20446 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VPUCM_20446 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VPUCM_20447 PF01627 Hpt domain VPUCM_20447 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VPUCM_20447 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_20447 PF00672 HAMP domain VPUCM_20447 PF00512 His Kinase A (phospho-acceptor) domain VPUCM_20447 PF00072 Response regulator receiver domain VPUCM_20448 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VPUCM_20449 PF01554 MatE VPUCM_2045 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_20450 PF04363 Protein of unknown function (DUF496) VPUCM_20453 PF04337 Protein of unknown function, DUF480 VPUCM_20454 PF01541 GIY-YIG catalytic domain VPUCM_20455 PF13407 Periplasmic binding protein domain VPUCM_20456 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_20456 PF00512 His Kinase A (phospho-acceptor) domain VPUCM_20456 PF09308 LuxQ, periplasmic VPUCM_20456 PF00072 Response regulator receiver domain VPUCM_20458 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VPUCM_20458 PF00529 HlyD membrane-fusion protein of T1SS VPUCM_2046 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_2046 PF12911 N-terminal TM domain of oligopeptide transport permease C VPUCM_20462 PF01037 Lrp/AsnC ligand binding domain VPUCM_20467 PF02355 Protein export membrane protein VPUCM_20467 PF13721 SecD export protein N-terminal TM region VPUCM_20467 PF07549 SecD/SecF GG Motif VPUCM_20468 PF07549 SecD/SecF GG Motif VPUCM_20468 PF02355 Protein export membrane protein VPUCM_2047 PF00005 ABC transporter VPUCM_2047 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VPUCM_20470 PF01810 LysE type translocator VPUCM_20471 PF00106 short chain dehydrogenase VPUCM_20472 PF02803 Thiolase, C-terminal domain VPUCM_20472 PF00108 Thiolase, N-terminal domain VPUCM_20474 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus VPUCM_20474 PF00561 alpha/beta hydrolase fold VPUCM_20476 PF03264 NapC/NirT cytochrome c family, N-terminal region VPUCM_20477 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) VPUCM_20478 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VPUCM_20478 PF00384 Molybdopterin oxidoreductase VPUCM_20478 PF01568 Molydopterin dinucleotide binding domain VPUCM_2048 PF00005 ABC transporter VPUCM_20480 PF12838 4Fe-4S dicluster domain VPUCM_20480 PF13187 4Fe-4S dicluster domain VPUCM_20481 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term VPUCM_20481 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_20481 PF07730 Histidine kinase VPUCM_20481 PF00672 HAMP domain VPUCM_20482 PF00196 Bacterial regulatory proteins, luxR family VPUCM_20482 PF00072 Response regulator receiver domain VPUCM_20485 PF01546 Peptidase family M20/M25/M40 VPUCM_20485 PF07687 Peptidase dimerisation domain VPUCM_20486 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VPUCM_20487 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VPUCM_20488 PF00873 AcrB/AcrD/AcrF family VPUCM_20489 PF00672 HAMP domain VPUCM_20489 PF12729 Four helix bundle sensory module for signal transduction VPUCM_20489 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPUCM_20490 PF00472 RF-1 domain VPUCM_20491 PF13419 Haloacid dehalogenase-like hydrolase VPUCM_20492 PF01389 OmpA-like transmembrane domain VPUCM_20492 PF00691 OmpA family VPUCM_20493 PF00793 DAHP synthetase I family VPUCM_20494 PF07690 Major Facilitator Superfamily VPUCM_20495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPUCM_20495 PF08447 PAS fold VPUCM_20496 PF00456 Transketolase, thiamine diphosphate binding domain VPUCM_20496 PF02780 Transketolase, C-terminal domain VPUCM_20496 PF02779 Transketolase, pyrimidine binding domain VPUCM_20497 PF00923 Transaldolase/Fructose-6-phosphate aldolase VPUCM_2050 PF01368 DHH family VPUCM_2050 PF02833 DHHA2 domain VPUCM_20501 PF08329 Chitinase A, N-terminal domain VPUCM_20501 PF00704 Glycosyl hydrolases family 18 VPUCM_20502 PF00563 EAL domain VPUCM_20502 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_20502 PF03707 Bacterial signalling protein N terminal repeat VPUCM_20503 PF00581 Rhodanese-like domain VPUCM_20506 PF00899 ThiF family VPUCM_20507 PF00994 Probable molybdopterin binding domain VPUCM_20507 PF03453 MoeA N-terminal region (domain I and II) VPUCM_20507 PF03454 MoeA C-terminal region (domain IV) VPUCM_20508 PF01227 GTP cyclohydrolase I VPUCM_20509 PF01566 Natural resistance-associated macrophage protein VPUCM_20512 PF00654 Voltage gated chloride channel VPUCM_20515 PF00248 Aldo/keto reductase family VPUCM_20516 PF00072 Response regulator receiver domain VPUCM_20518 PF01256 Carbohydrate kinase VPUCM_20518 PF03853 YjeF-related protein N-terminus VPUCM_20519 PF00478 IMP dehydrogenase / GMP reductase domain VPUCM_20520 PF13193 AMP-binding enzyme C-terminal domain VPUCM_20520 PF00501 AMP-binding enzyme VPUCM_20521 PF01012 Electron transfer flavoprotein domain VPUCM_20521 PF00766 Electron transfer flavoprotein FAD-binding domain VPUCM_20522 PF01012 Electron transfer flavoprotein domain VPUCM_20525 PF12399 Branched-chain amino acid ATP-binding cassette transporter VPUCM_20525 PF00005 ABC transporter VPUCM_2053 PF01568 Molydopterin dinucleotide binding domain VPUCM_2053 PF00384 Molybdopterin oxidoreductase VPUCM_2053 PF18364 Molybdopterin oxidoreductase N-terminal domain VPUCM_20530 PF00005 ABC transporter VPUCM_20531 PF14535 AMP-binding enzyme C-terminal domain VPUCM_20531 PF00501 AMP-binding enzyme VPUCM_20532 PF05724 Thiopurine S-methyltransferase (TPMT) VPUCM_20534 PF00034 Cytochrome c VPUCM_20536 PF13411 MerR HTH family regulatory protein VPUCM_20537 PF02627 Carboxymuconolactone decarboxylase family VPUCM_20538 PF02567 Phenazine biosynthesis-like protein VPUCM_2054 PF03264 NapC/NirT cytochrome c family, N-terminal region VPUCM_20540 PF02322 Cytochrome bd terminal oxidase subunit II VPUCM_20541 PF01654 Cytochrome bd terminal oxidase subunit I VPUCM_20542 PF00155 Aminotransferase class I and II VPUCM_20542 PF00392 Bacterial regulatory proteins, gntR family VPUCM_20543 PF14602 Hexapeptide repeat of succinyl-transferase VPUCM_20543 PF12464 Maltose acetyltransferase VPUCM_20545 PF00924 Mechanosensitive ion channel VPUCM_20545 PF12795 Mechanosensitive ion channel porin domain VPUCM_20545 PF12794 Mechanosensitive ion channel inner membrane domain 1 VPUCM_20548 PF00672 HAMP domain VPUCM_20548 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_20548 PF00512 His Kinase A (phospho-acceptor) domain VPUCM_20548 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VPUCM_20548 PF00072 Response regulator receiver domain VPUCM_20548 PF01627 Hpt domain VPUCM_20549 PF00682 HMGL-like VPUCM_2055 PF06796 Periplasmic nitrate reductase protein NapE VPUCM_20550 PF00364 Biotin-requiring enzyme VPUCM_20550 PF00289 Biotin carboxylase, N-terminal domain VPUCM_20550 PF02785 Biotin carboxylase C-terminal domain VPUCM_20550 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VPUCM_20551 PF00378 Enoyl-CoA hydratase/isomerase VPUCM_20552 PF01039 Carboxyl transferase domain VPUCM_20553 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VPUCM_20553 PF02770 Acyl-CoA dehydrogenase, middle domain VPUCM_20553 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VPUCM_20554 PF00376 MerR family regulatory protein VPUCM_20554 PF09278 MerR, DNA binding VPUCM_20555 PF02803 Thiolase, C-terminal domain VPUCM_20555 PF00108 Thiolase, N-terminal domain VPUCM_20556 PF00171 Aldehyde dehydrogenase family VPUCM_20557 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VPUCM_20557 PF02770 Acyl-CoA dehydrogenase, middle domain VPUCM_20557 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VPUCM_20558 PF00378 Enoyl-CoA hydratase/isomerase VPUCM_2056 PF03649 Uncharacterised protein family (UPF0014) VPUCM_20560 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VPUCM_20560 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VPUCM_20562 PF17151 Periplasmic sensor domain VPUCM_20562 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_20563 PF13977 BetI-type transcriptional repressor, C-terminal VPUCM_20563 PF00440 Bacterial regulatory proteins, tetR family VPUCM_20564 PF00171 Aldehyde dehydrogenase family VPUCM_20565 PF00732 GMC oxidoreductase VPUCM_20565 PF05199 GMC oxidoreductase VPUCM_20566 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VPUCM_20567 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_20568 PF00005 ABC transporter VPUCM_20568 PF00571 CBS domain VPUCM_20569 PF00881 Nitroreductase family VPUCM_20571 PF16200 C-terminal region of band_7 VPUCM_20571 PF01145 SPFH domain / Band 7 family VPUCM_20574 PF03707 Bacterial signalling protein N terminal repeat VPUCM_20574 PF13188 PAS domain VPUCM_20574 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_20574 PF00563 EAL domain VPUCM_20575 PF03150 Di-haem cytochrome c peroxidase VPUCM_20575 PF00034 Cytochrome c VPUCM_20576 PF00512 His Kinase A (phospho-acceptor) domain VPUCM_20576 PF09308 LuxQ, periplasmic VPUCM_20576 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_20576 PF00072 Response regulator receiver domain VPUCM_20579 PF04116 Fatty acid hydroxylase superfamily VPUCM_2058 PF01226 Formate/nitrite transporter VPUCM_20588 PF01048 Phosphorylase superfamily VPUCM_20589 PF00563 EAL domain VPUCM_20589 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_20590 PF05025 RbsD / FucU transport protein family VPUCM_20591 PF00005 ABC transporter VPUCM_20592 PF02653 Branched-chain amino acid transport system / permease component VPUCM_20593 PF13407 Periplasmic binding protein domain VPUCM_20594 PF00294 pfkB family carbohydrate kinase VPUCM_20595 PF00356 Bacterial regulatory proteins, lacI family VPUCM_20599 PF04973 Nicotinamide mononucleotide transporter VPUCM_20600 PF01048 Phosphorylase superfamily VPUCM_20603 PF01497 Periplasmic binding protein VPUCM_20604 PF01032 FecCD transport family VPUCM_20605 PF01032 FecCD transport family VPUCM_20606 PF00005 ABC transporter VPUCM_20607 PF13411 MerR HTH family regulatory protein VPUCM_20610 PF00593 TonB dependent receptor VPUCM_20610 PF07715 TonB-dependent Receptor Plug Domain VPUCM_20617 PF12805 FUSC-like inner membrane protein yccS VPUCM_20618 PF13361 UvrD-like helicase C-terminal domain VPUCM_20618 PF00580 UvrD/REP helicase N-terminal domain VPUCM_20618 PF12462 DNA helicase IV / RNA helicase N terminal VPUCM_20619 PF02142 MGS-like domain VPUCM_20620 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VPUCM_20621 PF01627 Hpt domain VPUCM_20621 PF00072 Response regulator receiver domain VPUCM_20621 PF00672 HAMP domain VPUCM_20621 PF00512 His Kinase A (phospho-acceptor) domain VPUCM_20621 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_20624 PF00486 Transcriptional regulatory protein, C terminal VPUCM_20624 PF00072 Response regulator receiver domain VPUCM_20625 PF00884 Sulfatase VPUCM_20626 PF00884 Sulfatase VPUCM_20628 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_20628 PF03466 LysR substrate binding domain VPUCM_20629 PF00884 Sulfatase VPUCM_2063 PF02698 DUF218 domain VPUCM_20630 PF04055 Radical SAM superfamily VPUCM_20630 PF13186 Iron-sulfur cluster-binding domain VPUCM_20631 PF07726 ATPase family associated with various cellular activities (AAA) VPUCM_20631 PF17863 AAA lid domain VPUCM_20634 PF00092 von Willebrand factor type A domain VPUCM_20637 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VPUCM_20638 PF03466 LysR substrate binding domain VPUCM_20638 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_20639 PF00781 Diacylglycerol kinase catalytic domain VPUCM_2064 PF08267 Cobalamin-independent synthase, N-terminal domain VPUCM_2064 PF01717 Cobalamin-independent synthase, Catalytic domain VPUCM_20640 PF04076 Bacterial OB fold (BOF) protein VPUCM_20643 PF04055 Radical SAM superfamily VPUCM_20643 PF13186 Iron-sulfur cluster-binding domain VPUCM_20645 PF08774 VRR-NUC domain VPUCM_20645 PF18081 Fanconi anemia-associated nuclease SAP domain VPUCM_20648 PF01435 Peptidase family M48 VPUCM_20649 PF04011 LemA family VPUCM_20650 PF03606 C4-dicarboxylate anaerobic carrier VPUCM_20654 PF03413 Peptidase propeptide and YPEB domain VPUCM_20654 PF07504 Fungalysin/Thermolysin Propeptide Motif VPUCM_20654 PF02868 Thermolysin metallopeptidase, alpha-helical domain VPUCM_20654 PF04151 Bacterial pre-peptidase C-terminal domain VPUCM_20654 PF01447 Thermolysin metallopeptidase, catalytic domain VPUCM_20655 PF00893 Small Multidrug Resistance protein VPUCM_20656 PF00892 EamA-like transporter family VPUCM_2066 PF12833 Helix-turn-helix domain VPUCM_2066 PF02311 AraC-like ligand binding domain VPUCM_20660 PF00171 Aldehyde dehydrogenase family VPUCM_20661 PF00939 Sodium:sulfate symporter transmembrane region VPUCM_20663 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VPUCM_20663 PF17203 Single cache domain 3 VPUCM_20663 PF00989 PAS fold VPUCM_20663 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_20664 PF00072 Response regulator receiver domain VPUCM_20664 PF12431 Transcriptional regulator VPUCM_20666 PF13187 4Fe-4S dicluster domain VPUCM_20666 PF01645 Conserved region in glutamate synthase VPUCM_20668 PF00141 Peroxidase VPUCM_2067 PF00857 Isochorismatase family VPUCM_20672 PF01757 Acyltransferase family VPUCM_20674 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VPUCM_20675 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VPUCM_20679 PF01769 Divalent cation transporter VPUCM_20679 PF03448 MgtE intracellular N domain VPUCM_20679 PF00571 CBS domain VPUCM_2068 PF12704 MacB-like periplasmic core domain VPUCM_2068 PF00005 ABC transporter VPUCM_2068 PF02687 FtsX-like permease family VPUCM_20685 PF01327 Polypeptide deformylase VPUCM_20686 PF09278 MerR, DNA binding VPUCM_20686 PF00376 MerR family regulatory protein VPUCM_20689 PF02253 Phospholipase A1 VPUCM_2069 PF00005 ABC transporter VPUCM_2069 PF12704 MacB-like periplasmic core domain VPUCM_2069 PF02687 FtsX-like permease family VPUCM_20693 PF00664 ABC transporter transmembrane region VPUCM_20693 PF00005 ABC transporter VPUCM_20695 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VPUCM_20695 PF11490 DNA polymerase III polC-type N-terminus II VPUCM_20695 PF02811 PHP domain VPUCM_20695 PF14579 Helix-hairpin-helix motif VPUCM_20695 PF07733 Bacterial DNA polymerase III alpha NTPase domain VPUCM_20695 PF00929 Exonuclease VPUCM_20696 PF03466 LysR substrate binding domain VPUCM_20696 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_20697 PF17848 Acetyl-coA carboxylase zinc finger domain VPUCM_20697 PF01039 Carboxyl transferase domain VPUCM_2070 PF02687 FtsX-like permease family VPUCM_2070 PF12704 MacB-like periplasmic core domain VPUCM_2070 PF00005 ABC transporter VPUCM_20704 PF02347 Glycine cleavage system P-protein VPUCM_20705 PF01597 Glycine cleavage H-protein VPUCM_20706 PF00464 Serine hydroxymethyltransferase VPUCM_20708 PF08669 Glycine cleavage T-protein C-terminal barrel domain VPUCM_20708 PF01571 Aminomethyltransferase folate-binding domain VPUCM_20710 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VPUCM_20712 PF00873 AcrB/AcrD/AcrF family VPUCM_20714 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VPUCM_20714 PF02378 Phosphotransferase system, EIIC VPUCM_20715 PF00294 pfkB family carbohydrate kinase VPUCM_20716 PF00381 PTS HPr component phosphorylation site VPUCM_20716 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VPUCM_20717 PF00356 Bacterial regulatory proteins, lacI family VPUCM_20717 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VPUCM_2072 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VPUCM_20721 PF00989 PAS fold VPUCM_20721 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_20721 PF00563 EAL domain VPUCM_20721 PF01590 GAF domain VPUCM_20722 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_20723 PF00497 Bacterial extracellular solute-binding proteins, family 3 VPUCM_20724 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_20725 PF00005 ABC transporter VPUCM_20726 PF00224 Pyruvate kinase, barrel domain VPUCM_20726 PF02887 Pyruvate kinase, alpha/beta domain VPUCM_20727 PF07690 Major Facilitator Superfamily VPUCM_20729 PF00512 His Kinase A (phospho-acceptor) domain VPUCM_20729 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_20729 PF00672 HAMP domain VPUCM_20730 PF02954 Bacterial regulatory protein, Fis family VPUCM_20730 PF14532 Sigma-54 interaction domain VPUCM_20730 PF00072 Response regulator receiver domain VPUCM_20732 PF00465 Iron-containing alcohol dehydrogenase VPUCM_20733 PF12833 Helix-turn-helix domain VPUCM_20733 PF06719 AraC-type transcriptional regulator N-terminus VPUCM_20734 PF00704 Glycosyl hydrolases family 18 VPUCM_20734 PF06483 Chitinase C VPUCM_20735 PF00483 Nucleotidyl transferase VPUCM_20736 PF01268 Formate--tetrahydrofolate ligase VPUCM_20737 PF00294 pfkB family carbohydrate kinase VPUCM_20740 PF11849 Domain of unknown function (DUF3369) VPUCM_20741 PF13419 Haloacid dehalogenase-like hydrolase VPUCM_20743 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPUCM_20745 PF04336 Acyl carrier protein phosphodiesterase VPUCM_20746 PF00271 Helicase conserved C-terminal domain VPUCM_20746 PF00270 DEAD/DEAH box helicase VPUCM_20747 PF00563 EAL domain VPUCM_20747 PF12792 CSS motif domain associated with EAL VPUCM_2075 PF05958 tRNA (Uracil-5-)-methyltransferase VPUCM_2075 PF01938 TRAM domain VPUCM_20750 PF01292 Prokaryotic cytochrome b561 VPUCM_20751 PF04264 YceI-like domain VPUCM_20752 PF01226 Formate/nitrite transporter VPUCM_20753 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_20753 PF03466 LysR substrate binding domain VPUCM_20754 PF06496 Protein of unknown function (DUF1097) VPUCM_20755 PF11398 Protein of unknown function (DUF2813) VPUCM_20756 PF00149 Calcineurin-like phosphoesterase VPUCM_20756 PF02872 5'-nucleotidase, C-terminal domain VPUCM_20758 PF03741 Integral membrane protein TerC family VPUCM_20761 PF12262 Bacterial virulence factor lipase N-terminal VPUCM_20762 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VPUCM_20765 PF03061 Thioesterase superfamily VPUCM_20767 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VPUCM_20767 PF12793 Sugar transport-related sRNA regulator N-term VPUCM_20773 PF00226 DnaJ domain VPUCM_20773 PF01556 DnaJ C terminal domain VPUCM_20773 PF00684 DnaJ central domain VPUCM_20775 PF00563 EAL domain VPUCM_20775 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_20775 PF03707 Bacterial signalling protein N terminal repeat VPUCM_20775 PF13188 PAS domain VPUCM_20776 PF07055 Enoyl reductase FAD binding domain VPUCM_20776 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VPUCM_20776 PF12241 Trans-2-enoyl-CoA reductase catalytic region VPUCM_20777 PF13472 GDSL-like Lipase/Acylhydrolase family VPUCM_20778 PF00005 ABC transporter VPUCM_2078 PF00085 Thioredoxin VPUCM_20781 PF02626 Carboxyltransferase domain, subdomain A and B VPUCM_20782 PF02682 Carboxyltransferase domain, subdomain C and D VPUCM_20783 PF03746 LamB/YcsF family VPUCM_20784 PF08448 PAS fold VPUCM_20784 PF13426 PAS domain VPUCM_20784 PF08447 PAS fold VPUCM_20784 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_20784 PF00563 EAL domain VPUCM_20784 PF05231 MASE1 VPUCM_20785 PF16363 GDP-mannose 4,6 dehydratase VPUCM_20787 PF00593 TonB dependent receptor VPUCM_20787 PF04886 PT repeat VPUCM_20787 PF07715 TonB-dependent Receptor Plug Domain VPUCM_20788 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_20788 PF03466 LysR substrate binding domain VPUCM_20789 PF00583 Acetyltransferase (GNAT) family VPUCM_20789 PF13380 CoA binding domain VPUCM_20789 PF13607 Succinyl-CoA ligase like flavodoxin domain VPUCM_2079 PF11412 Disulphide bond corrector protein DsbC VPUCM_2079 PF02683 Cytochrome C biogenesis protein transmembrane region VPUCM_20791 PF07478 D-ala D-ala ligase C-terminus VPUCM_20791 PF01820 D-ala D-ala ligase N-terminus VPUCM_20793 PF01253 Translation initiation factor SUI1 VPUCM_20795 PF05840 Bacteriophage replication gene A protein (GPA) VPUCM_20803 PF00263 Bacterial type II and III secretion system protein VPUCM_20803 PF03958 Bacterial type II/III secretion system short domain VPUCM_20806 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_20806 PF03466 LysR substrate binding domain VPUCM_20808 PF00582 Universal stress protein family VPUCM_20809 PF03701 Uncharacterised protein family (UPF0181) VPUCM_2081 PF03466 LysR substrate binding domain VPUCM_2081 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_20812 PF00486 Transcriptional regulatory protein, C terminal VPUCM_20812 PF00072 Response regulator receiver domain VPUCM_20814 PF02233 NAD(P) transhydrogenase beta subunit VPUCM_20815 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch VPUCM_20815 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VPUCM_20815 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VPUCM_20818 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_20818 PF00072 Response regulator receiver domain VPUCM_2082 PF00196 Bacterial regulatory proteins, luxR family VPUCM_2082 PF00072 Response regulator receiver domain VPUCM_20820 PF01590 GAF domain VPUCM_20820 PF00563 EAL domain VPUCM_20820 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_20820 PF00360 Phytochrome region VPUCM_20822 PF03459 TOBE domain VPUCM_20822 PF00005 ABC transporter VPUCM_20823 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_20825 PF07685 CobB/CobQ-like glutamine amidotransferase domain VPUCM_20826 PF04076 Bacterial OB fold (BOF) protein VPUCM_20829 PF18030 RimK PreATP-grasp domain VPUCM_20829 PF08443 RimK-like ATP-grasp domain VPUCM_2083 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_2083 PF00512 His Kinase A (phospho-acceptor) domain VPUCM_20830 PF00155 Aminotransferase class I and II VPUCM_20831 PF12833 Helix-turn-helix domain VPUCM_20833 PF01554 MatE VPUCM_20835 PF03477 ATP cone domain VPUCM_20835 PF13597 Anaerobic ribonucleoside-triphosphate reductase VPUCM_20838 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VPUCM_20839 PF00873 AcrB/AcrD/AcrF family VPUCM_2084 PF13247 4Fe-4S dicluster domain VPUCM_20841 PF04143 Sulphur transport VPUCM_20844 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VPUCM_20844 PF07992 Pyridine nucleotide-disulphide oxidoreductase VPUCM_20845 PF00384 Molybdopterin oxidoreductase VPUCM_20846 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_20846 PF03466 LysR substrate binding domain VPUCM_20847 PF02634 FdhD/NarQ family VPUCM_20848 PF07690 Major Facilitator Superfamily VPUCM_20849 PF00196 Bacterial regulatory proteins, luxR family VPUCM_20849 PF00072 Response regulator receiver domain VPUCM_2085 PF03916 Polysulphide reductase, NrfD VPUCM_20850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_20850 PF07730 Histidine kinase VPUCM_20850 PF05231 MASE1 VPUCM_20851 PF07690 Major Facilitator Superfamily VPUCM_20852 PF01238 Phosphomannose isomerase type I VPUCM_20856 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VPUCM_20856 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VPUCM_20857 PF00085 Thioredoxin VPUCM_20858 PF07690 Major Facilitator Superfamily VPUCM_2086 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VPUCM_2086 PF01568 Molydopterin dinucleotide binding domain VPUCM_2086 PF00384 Molybdopterin oxidoreductase VPUCM_20860 PF01554 MatE VPUCM_20861 PF11756 Nitrous oxide-stimulated promoter VPUCM_20864 PF07715 TonB-dependent Receptor Plug Domain VPUCM_20864 PF00593 TonB dependent receptor VPUCM_20866 PF03605 Anaerobic c4-dicarboxylate membrane transporter VPUCM_20869 PF10414 Sirohaem synthase dimerisation region VPUCM_20869 PF14824 Sirohaem biosynthesis protein central VPUCM_20869 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VPUCM_20870 PF01226 Formate/nitrite transporter VPUCM_20871 PF13806 Rieske-like [2Fe-2S] domain VPUCM_20872 PF18267 Rubredoxin NAD+ reductase C-terminal domain VPUCM_20872 PF04324 BFD-like [2Fe-2S] binding domain VPUCM_20872 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VPUCM_20872 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VPUCM_20872 PF07992 Pyridine nucleotide-disulphide oxidoreductase VPUCM_20873 PF01272 Transcription elongation factor, GreA/GreB, C-term VPUCM_20873 PF14760 Rnk N-terminus VPUCM_2088 PF00034 Cytochrome c VPUCM_20880 PF06965 Na+/H+ antiporter 1 VPUCM_20880 PF13462 Thioredoxin VPUCM_20884 PF09154 Domain of unknown function (DUF1939) VPUCM_20884 PF00128 Alpha amylase, catalytic domain VPUCM_20885 PF00672 HAMP domain VPUCM_20885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPUCM_20886 PF01168 Alanine racemase, N-terminal domain VPUCM_20886 PF00842 Alanine racemase, C-terminal domain VPUCM_2089 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VPUCM_20890 PF09330 D-lactate dehydrogenase, membrane binding VPUCM_20890 PF01565 FAD binding domain VPUCM_20891 PF03466 LysR substrate binding domain VPUCM_20891 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_20892 PF05762 VWA domain containing CoxE-like protein VPUCM_20893 PF17868 AAA lid domain VPUCM_20893 PF07728 AAA domain (dynein-related subfamily) VPUCM_20893 PF12592 Protein of unknown function (DUF3763) VPUCM_20895 PF01212 Beta-eliminating lyase VPUCM_20897 PF03606 C4-dicarboxylate anaerobic carrier VPUCM_20899 PF01569 PAP2 superfamily VPUCM_2090 PF04403 Paraquat-inducible protein A VPUCM_20902 PF00892 EamA-like transporter family VPUCM_20905 PF01584 CheW-like domain VPUCM_20905 PF00072 Response regulator receiver domain VPUCM_20909 PF00196 Bacterial regulatory proteins, luxR family VPUCM_20909 PF00072 Response regulator receiver domain VPUCM_2091 PF02470 MlaD protein VPUCM_20911 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_20912 PF00196 Bacterial regulatory proteins, luxR family VPUCM_20912 PF00072 Response regulator receiver domain VPUCM_20913 PF03707 Bacterial signalling protein N terminal repeat VPUCM_20913 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_20913 PF00563 EAL domain VPUCM_20913 PF13188 PAS domain VPUCM_20914 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_20914 PF00072 Response regulator receiver domain VPUCM_20914 PF00512 His Kinase A (phospho-acceptor) domain VPUCM_20914 PF09456 RcsC Alpha-Beta-Loop (ABL) VPUCM_20916 PF03466 LysR substrate binding domain VPUCM_20916 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_20917 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_20917 PF03466 LysR substrate binding domain VPUCM_20918 PF01926 50S ribosome-binding GTPase VPUCM_20919 PF00155 Aminotransferase class I and II VPUCM_20920 PF00072 Response regulator receiver domain VPUCM_20920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_20924 PF07690 Major Facilitator Superfamily VPUCM_20926 PF08212 Lipocalin-like domain VPUCM_2093 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase VPUCM_20930 PF13476 AAA domain VPUCM_20931 PF12320 Type 5 capsule protein repressor C-terminal domain VPUCM_20931 PF00149 Calcineurin-like phosphoesterase VPUCM_20933 PF16671 Actin cross-linking domain VPUCM_20933 PF04717 Type VI secretion system, phage-baseplate injector VPUCM_20935 PF07724 AAA domain (Cdc48 subfamily) VPUCM_20935 PF10431 C-terminal, D2-small domain, of ClpB protein VPUCM_20935 PF00004 ATPase family associated with various cellular activities (AAA) VPUCM_20935 PF17871 AAA lid domain VPUCM_20947 PF00691 OmpA family VPUCM_20947 PF13677 Membrane MotB of proton-channel complex MotA/MotB VPUCM_2095 PF00535 Glycosyl transferase family 2 VPUCM_20951 PF03793 PASTA domain VPUCM_20951 PF00069 Protein kinase domain VPUCM_20956 PF00211 Adenylate and Guanylate cyclase catalytic domain VPUCM_20956 PF00072 Response regulator receiver domain VPUCM_20959 PF00440 Bacterial regulatory proteins, tetR family VPUCM_20959 PF08361 MAATS-type transcriptional repressor, C-terminal region VPUCM_2096 PF01370 NAD dependent epimerase/dehydratase family VPUCM_20962 PF07992 Pyridine nucleotide-disulphide oxidoreductase VPUCM_20962 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VPUCM_20962 PF13806 Rieske-like [2Fe-2S] domain VPUCM_20962 PF18267 Rubredoxin NAD+ reductase C-terminal domain VPUCM_20962 PF04324 BFD-like [2Fe-2S] binding domain VPUCM_20962 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VPUCM_20963 PF00005 ABC transporter VPUCM_20964 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_20967 PF08376 Nitrate and nitrite sensing VPUCM_20967 PF03861 ANTAR domain VPUCM_20968 PF01738 Dienelactone hydrolase family VPUCM_20969 PF02885 Glycosyl transferase family, helical bundle domain VPUCM_20969 PF00591 Glycosyl transferase family, a/b domain VPUCM_20970 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VPUCM_20970 PF14824 Sirohaem biosynthesis protein central VPUCM_20970 PF10414 Sirohaem synthase dimerisation region VPUCM_20971 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VPUCM_20971 PF00384 Molybdopterin oxidoreductase VPUCM_20971 PF01568 Molydopterin dinucleotide binding domain VPUCM_20972 PF00583 Acetyltransferase (GNAT) family VPUCM_20974 PF03222 Tryptophan/tyrosine permease family VPUCM_20975 PF00072 Response regulator receiver domain VPUCM_20975 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_20977 PF01483 Proprotein convertase P-domain VPUCM_20977 PF00082 Subtilase family VPUCM_20979 PF00245 Alkaline phosphatase VPUCM_2098 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VPUCM_20982 PF00486 Transcriptional regulatory protein, C terminal VPUCM_20982 PF00072 Response regulator receiver domain VPUCM_20987 PF04314 Copper chaperone PCu(A)C VPUCM_20988 PF00012 Hsp70 protein VPUCM_2099 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VPUCM_20991 PF00676 Dehydrogenase E1 component VPUCM_20992 PF02780 Transketolase, C-terminal domain VPUCM_20992 PF02779 Transketolase, pyrimidine binding domain VPUCM_20993 PF02817 e3 binding domain VPUCM_20993 PF00364 Biotin-requiring enzyme VPUCM_20993 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VPUCM_20995 PF00043 Glutathione S-transferase, C-terminal domain VPUCM_20995 PF02798 Glutathione S-transferase, N-terminal domain VPUCM_20996 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_20996 PF03466 LysR substrate binding domain VPUCM_20999 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_2100 PF18073 Rubredoxin metal binding domain VPUCM_21000 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_21001 PF00497 Bacterial extracellular solute-binding proteins, family 3 VPUCM_21002 PF00005 ABC transporter VPUCM_21004 PF03466 LysR substrate binding domain VPUCM_21004 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_21007 PF03466 LysR substrate binding domain VPUCM_21007 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_21008 PF08031 Berberine and berberine like VPUCM_21008 PF01565 FAD binding domain VPUCM_2101 PF06305 Lipopolysaccharide assembly protein A domain VPUCM_21010 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VPUCM_21011 PF01040 UbiA prenyltransferase family VPUCM_21013 PF00510 Cytochrome c oxidase subunit III VPUCM_21014 PF00115 Cytochrome C and Quinol oxidase polypeptide I VPUCM_21015 PF00116 Cytochrome C oxidase subunit II, periplasmic domain VPUCM_21015 PF06481 COX Aromatic Rich Motif VPUCM_21017 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VPUCM_21017 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VPUCM_21018 PF00378 Enoyl-CoA hydratase/isomerase VPUCM_21019 PF00378 Enoyl-CoA hydratase/isomerase VPUCM_2102 PF00216 Bacterial DNA-binding protein VPUCM_21021 PF00171 Aldehyde dehydrogenase family VPUCM_21022 PF00108 Thiolase, N-terminal domain VPUCM_21022 PF02803 Thiolase, C-terminal domain VPUCM_21023 PF09278 MerR, DNA binding VPUCM_21023 PF00376 MerR family regulatory protein VPUCM_21024 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VPUCM_21024 PF02770 Acyl-CoA dehydrogenase, middle domain VPUCM_21024 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VPUCM_21026 PF01039 Carboxyl transferase domain VPUCM_21027 PF00378 Enoyl-CoA hydratase/isomerase VPUCM_21028 PF00682 HMGL-like VPUCM_21029 PF10063 Uncharacterized integral membrane protein (DUF2301) VPUCM_2103 PF00575 S1 RNA binding domain VPUCM_21031 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPUCM_21031 PF08447 PAS fold VPUCM_21031 PF13426 PAS domain VPUCM_21032 PF00871 Acetokinase family VPUCM_21034 PF13426 PAS domain VPUCM_21034 PF00563 EAL domain VPUCM_21034 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_21035 PF00271 Helicase conserved C-terminal domain VPUCM_21035 PF03880 DbpA RNA binding domain VPUCM_21035 PF00270 DEAD/DEAH box helicase VPUCM_21036 PF08206 Ribonuclease B OB domain VPUCM_21036 PF00575 S1 RNA binding domain VPUCM_21036 PF00773 RNB domain VPUCM_21037 PF12833 Helix-turn-helix domain VPUCM_2104 PF02224 Cytidylate kinase VPUCM_21040 PF12849 PBP superfamily domain VPUCM_21042 PF03466 LysR substrate binding domain VPUCM_21042 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_21043 PF04055 Radical SAM superfamily VPUCM_21043 PF13186 Iron-sulfur cluster-binding domain VPUCM_21044 PF00884 Sulfatase VPUCM_21045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_21045 PF03466 LysR substrate binding domain VPUCM_21047 PF12729 Four helix bundle sensory module for signal transduction VPUCM_21047 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPUCM_21047 PF00672 HAMP domain VPUCM_21048 PF00005 ABC transporter VPUCM_21049 PF00563 EAL domain VPUCM_21049 PF12792 CSS motif domain associated with EAL VPUCM_2105 PF01343 Peptidase family S49 VPUCM_2105 PF08496 Peptidase family S49 N-terminal VPUCM_21053 PF00271 Helicase conserved C-terminal domain VPUCM_21053 PF00270 DEAD/DEAH box helicase VPUCM_21054 PF07683 Cobalamin synthesis protein cobW C-terminal domain VPUCM_21054 PF02492 CobW/HypB/UreG, nucleotide-binding domain VPUCM_21056 PF01470 Pyroglutamyl peptidase VPUCM_21058 PF00291 Pyridoxal-phosphate dependent enzyme VPUCM_21059 PF09905 DNA-binding protein VF530 VPUCM_2106 PF00106 short chain dehydrogenase VPUCM_21060 PF00271 Helicase conserved C-terminal domain VPUCM_21060 PF00270 DEAD/DEAH box helicase VPUCM_21061 PF12843 Putative quorum-sensing-regulated virulence factor VPUCM_21065 PF01329 Pterin 4 alpha carbinolamine dehydratase VPUCM_21066 PF00351 Biopterin-dependent aromatic amino acid hydroxylase VPUCM_21067 PF00501 AMP-binding enzyme VPUCM_21067 PF13193 AMP-binding enzyme C-terminal domain VPUCM_21069 PF03466 LysR substrate binding domain VPUCM_21069 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_21074 PF00892 EamA-like transporter family VPUCM_21077 PF00465 Iron-containing alcohol dehydrogenase VPUCM_21078 PF07995 Glucose / Sorbosone dehydrogenase VPUCM_21080 PF00210 Ferritin-like domain VPUCM_21081 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPUCM_21081 PF00672 HAMP domain VPUCM_21081 PF17200 Single Cache domain 2 VPUCM_21084 PF02687 FtsX-like permease family VPUCM_21084 PF12704 MacB-like periplasmic core domain VPUCM_21084 PF00005 ABC transporter VPUCM_21085 PF00005 ABC transporter VPUCM_21085 PF02687 FtsX-like permease family VPUCM_21085 PF12704 MacB-like periplasmic core domain VPUCM_21088 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_21089 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPUCM_21089 PF13426 PAS domain VPUCM_21089 PF08447 PAS fold VPUCM_2109 PF07733 Bacterial DNA polymerase III alpha NTPase domain VPUCM_2109 PF01336 OB-fold nucleic acid binding domain VPUCM_2109 PF02811 PHP domain VPUCM_2109 PF14579 Helix-hairpin-helix motif VPUCM_2109 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VPUCM_21090 PF00313 'Cold-shock' DNA-binding domain VPUCM_21096 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VPUCM_21096 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VPUCM_21097 PF01040 UbiA prenyltransferase family VPUCM_21098 PF02628 Cytochrome oxidase assembly protein VPUCM_2110 PF00072 Response regulator receiver domain VPUCM_2110 PF01584 CheW-like domain VPUCM_21103 PF00510 Cytochrome c oxidase subunit III VPUCM_21104 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 VPUCM_21105 PF00115 Cytochrome C and Quinol oxidase polypeptide I VPUCM_21106 PF00116 Cytochrome C oxidase subunit II, periplasmic domain VPUCM_21106 PF02790 Cytochrome C oxidase subunit II, transmembrane domain VPUCM_21107 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VPUCM_21107 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VPUCM_21107 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VPUCM_21107 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VPUCM_21109 PF01810 LysE type translocator VPUCM_2111 PF00480 ROK family VPUCM_21110 PF12833 Helix-turn-helix domain VPUCM_21113 PF01557 Fumarylacetoacetate (FAA) hydrolase family VPUCM_21115 PF00267 Gram-negative porin VPUCM_21116 PF00892 EamA-like transporter family VPUCM_21117 PF00462 Glutaredoxin VPUCM_2112 PF02887 Pyruvate kinase, alpha/beta domain VPUCM_2112 PF00224 Pyruvate kinase, barrel domain VPUCM_21120 PF07690 Major Facilitator Superfamily VPUCM_21121 PF03466 LysR substrate binding domain VPUCM_21121 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_21122 PF00563 EAL domain VPUCM_21122 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_21122 PF08447 PAS fold VPUCM_21122 PF08448 PAS fold VPUCM_21123 PF01551 Peptidase family M23 VPUCM_21123 PF01476 LysM domain VPUCM_21123 PF08525 Opacity-associated protein A N-terminal motif VPUCM_21128 PF00672 HAMP domain VPUCM_21128 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPUCM_21128 PF02743 Cache domain VPUCM_2113 PF01734 Patatin-like phospholipase VPUCM_21130 PF03222 Tryptophan/tyrosine permease family VPUCM_21137 PF00107 Zinc-binding dehydrogenase VPUCM_21137 PF08240 Alcohol dehydrogenase GroES-like domain VPUCM_21138 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VPUCM_21138 PF02378 Phosphotransferase system, EIIC VPUCM_21139 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VPUCM_21142 PF01758 Sodium Bile acid symporter family VPUCM_21144 PF01161 Phosphatidylethanolamine-binding protein VPUCM_21145 PF02567 Phenazine biosynthesis-like protein VPUCM_21146 PF10282 Lactonase, 7-bladed beta-propeller VPUCM_21148 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPUCM_21148 PF00672 HAMP domain VPUCM_2115 PF00209 Sodium:neurotransmitter symporter family VPUCM_21151 PF00005 ABC transporter VPUCM_21155 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VPUCM_21155 PF12838 4Fe-4S dicluster domain VPUCM_21155 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region VPUCM_21155 PF01568 Molydopterin dinucleotide binding domain VPUCM_21155 PF00384 Molybdopterin oxidoreductase VPUCM_21159 PF00873 AcrB/AcrD/AcrF family VPUCM_21163 PF13185 GAF domain VPUCM_21163 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_21165 PF13302 Acetyltransferase (GNAT) domain VPUCM_21167 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VPUCM_21168 PF00873 AcrB/AcrD/AcrF family VPUCM_21169 PF13533 Biotin-lipoyl like VPUCM_2117 PF00367 phosphotransferase system, EIIB VPUCM_2117 PF02378 Phosphotransferase system, EIIC VPUCM_21171 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VPUCM_21171 PF00326 Prolyl oligopeptidase family VPUCM_21173 PF00582 Universal stress protein family VPUCM_21174 PF02525 Flavodoxin-like fold VPUCM_21175 PF00999 Sodium/hydrogen exchanger family VPUCM_21175 PF02254 TrkA-N domain VPUCM_21178 PF00128 Alpha amylase, catalytic domain VPUCM_2118 PF01026 TatD related DNase VPUCM_21180 PF04151 Bacterial pre-peptidase C-terminal domain VPUCM_21180 PF01752 Collagenase VPUCM_21180 PF08453 Peptidase family M9 N-terminal VPUCM_21184 PF03466 LysR substrate binding domain VPUCM_21184 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_21186 PF00210 Ferritin-like domain VPUCM_21187 PF00141 Peroxidase VPUCM_2119 PF09115 DNA polymerase III, delta subunit, C terminal VPUCM_21191 PF00082 Subtilase family VPUCM_21195 PF08502 LeuA allosteric (dimerisation) domain VPUCM_21195 PF00682 HMGL-like VPUCM_21197 PF07690 Major Facilitator Superfamily VPUCM_21198 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_21198 PF03466 LysR substrate binding domain VPUCM_2120 PF02223 Thymidylate kinase VPUCM_21202 PF01584 CheW-like domain VPUCM_21202 PF00072 Response regulator receiver domain VPUCM_21205 PF01243 Pyridoxamine 5'-phosphate oxidase VPUCM_21206 PF06228 Haem utilisation ChuX/HutX VPUCM_21207 PF04055 Radical SAM superfamily VPUCM_21208 PF03544 Gram-negative bacterial TonB protein C-terminal VPUCM_21209 PF01618 MotA/TolQ/ExbB proton channel family VPUCM_2121 PF02618 YceG-like family VPUCM_21210 PF02472 Biopolymer transport protein ExbD/TolR VPUCM_21212 PF01032 FecCD transport family VPUCM_21213 PF00005 ABC transporter VPUCM_2122 PF01063 Amino-transferase class IV VPUCM_21222 PF01467 Cytidylyltransferase-like VPUCM_21223 PF02540 NAD synthase VPUCM_21224 PF03476 MOSC N-terminal beta barrel domain VPUCM_21224 PF00111 2Fe-2S iron-sulfur cluster binding domain VPUCM_21224 PF00111 2Fe-2S iron-sulfur cluster binding domain VPUCM_21224 PF03473 MOSC domain VPUCM_21224 PF03473 MOSC domain VPUCM_21224 PF03476 MOSC N-terminal beta barrel domain VPUCM_21225 PF01679 Proteolipid membrane potential modulator VPUCM_21226 PF01979 Amidohydrolase family VPUCM_21227 PF05661 Protein of unknown function (DUF808) VPUCM_21229 PF00072 Response regulator receiver domain VPUCM_21229 PF12833 Helix-turn-helix domain VPUCM_2123 PF00109 Beta-ketoacyl synthase, N-terminal domain VPUCM_2123 PF02801 Beta-ketoacyl synthase, C-terminal domain VPUCM_21233 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_21234 PF14785 Maltose transport system permease protein MalF P2 domain VPUCM_21234 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_21235 PF01547 Bacterial extracellular solute-binding protein VPUCM_21236 PF00005 ABC transporter VPUCM_21236 PF08402 TOBE domain VPUCM_21237 PF02397 Bacterial sugar transferase VPUCM_2124 PF00550 Phosphopantetheine attachment site VPUCM_21240 PF13614 AAA domain VPUCM_21240 PF02706 Chain length determinant protein VPUCM_21240 PF13807 G-rich domain on putative tyrosine kinase VPUCM_21242 PF13439 Glycosyltransferase Family 4 VPUCM_21242 PF00534 Glycosyl transferases group 1 VPUCM_21249 PF00440 Bacterial regulatory proteins, tetR family VPUCM_21249 PF16925 Tetracyclin repressor-like, C-terminal domain VPUCM_21250 PF16884 N-terminal domain of oxidoreductase VPUCM_21250 PF00107 Zinc-binding dehydrogenase VPUCM_21251 PF13417 Glutathione S-transferase, N-terminal domain VPUCM_21252 PF06628 Catalase-related immune-responsive VPUCM_21252 PF00199 Catalase VPUCM_21253 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VPUCM_21253 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VPUCM_21255 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VPUCM_21257 PF12833 Helix-turn-helix domain VPUCM_21258 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VPUCM_21258 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VPUCM_21259 PF01238 Phosphomannose isomerase type I VPUCM_2126 PF00698 Acyl transferase domain VPUCM_21261 PF13419 Haloacid dehalogenase-like hydrolase VPUCM_21262 PF00127 Copper binding proteins, plastocyanin/azurin family VPUCM_21263 PF00563 EAL domain VPUCM_21263 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_21263 PF03707 Bacterial signalling protein N terminal repeat VPUCM_21264 PF02386 Cation transport protein VPUCM_21265 PF02254 TrkA-N domain VPUCM_21265 PF02080 TrkA-C domain VPUCM_21266 PF00486 Transcriptional regulatory protein, C terminal VPUCM_21266 PF00072 Response regulator receiver domain VPUCM_21267 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_21267 PF00512 His Kinase A (phospho-acceptor) domain VPUCM_21267 PF00989 PAS fold VPUCM_21267 PF16736 Single Cache-like VPUCM_21268 PF00005 ABC transporter VPUCM_21268 PF00664 ABC transporter transmembrane region VPUCM_21269 PF00593 TonB dependent receptor VPUCM_21269 PF07715 TonB-dependent Receptor Plug Domain VPUCM_2127 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VPUCM_2127 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VPUCM_21270 PF00005 ABC transporter VPUCM_21271 PF01497 Periplasmic binding protein VPUCM_21272 PF01032 FecCD transport family VPUCM_21274 PF00529 HlyD membrane-fusion protein of T1SS VPUCM_21275 PF00664 ABC transporter transmembrane region VPUCM_21275 PF00005 ABC transporter VPUCM_21277 PF00196 Bacterial regulatory proteins, luxR family VPUCM_21278 PF00196 Bacterial regulatory proteins, luxR family VPUCM_2128 PF02504 Fatty acid synthesis protein VPUCM_21280 PF00672 HAMP domain VPUCM_21280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPUCM_21280 PF02743 Cache domain VPUCM_21282 PF17863 AAA lid domain VPUCM_21282 PF07726 ATPase family associated with various cellular activities (AAA) VPUCM_21283 PF01882 Protein of unknown function DUF58 VPUCM_21285 PF13519 von Willebrand factor type A domain VPUCM_21286 PF07584 Aerotolerance regulator N-terminal VPUCM_21286 PF13519 von Willebrand factor type A domain VPUCM_21289 PF00005 ABC transporter VPUCM_2129 PF01783 Ribosomal L32p protein family VPUCM_21290 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_21291 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_21292 PF12849 PBP superfamily domain VPUCM_21293 PF00672 HAMP domain VPUCM_21293 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPUCM_21297 PF07715 TonB-dependent Receptor Plug Domain VPUCM_21297 PF00593 TonB dependent receptor VPUCM_21298 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VPUCM_21298 PF00326 Prolyl oligopeptidase family VPUCM_21299 PF00271 Helicase conserved C-terminal domain VPUCM_21299 PF00270 DEAD/DEAH box helicase VPUCM_2130 PF02620 Large ribosomal RNA subunit accumulation protein YceD VPUCM_21301 PF00132 Bacterial transferase hexapeptide (six repeats) VPUCM_21302 PF03734 L,D-transpeptidase catalytic domain VPUCM_21302 PF01476 LysM domain VPUCM_21302 PF17969 L,D-transpeptidase C-terminal domain VPUCM_21303 PF03441 FAD binding domain of DNA photolyase VPUCM_21303 PF00875 DNA photolyase VPUCM_21304 PF13411 MerR HTH family regulatory protein VPUCM_21305 PF08349 Protein of unknown function (DUF1722) VPUCM_21306 PF01048 Phosphorylase superfamily VPUCM_21309 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_2131 PF02545 Maf-like protein VPUCM_21310 PF11742 Protein of unknown function (DUF3302) VPUCM_21311 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VPUCM_21311 PF00529 HlyD membrane-fusion protein of T1SS VPUCM_21312 PF07155 ECF-type riboflavin transporter, S component VPUCM_21313 PF00005 ABC transporter VPUCM_21313 PF12558 ATP-binding cassette cobalt transporter VPUCM_21316 PF12801 4Fe-4S binding domain VPUCM_21316 PF13237 4Fe-4S dicluster domain VPUCM_21317 PF12838 4Fe-4S dicluster domain VPUCM_21317 PF12800 4Fe-4S binding domain VPUCM_21318 PF00583 Acetyltransferase (GNAT) family VPUCM_2132 PF00849 RNA pseudouridylate synthase VPUCM_2132 PF01479 S4 domain VPUCM_21321 PF07238 PilZ domain VPUCM_21321 PF12945 Flagellar protein YcgR VPUCM_21322 PF00672 HAMP domain VPUCM_21322 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPUCM_21323 PF13654 AAA domain VPUCM_21323 PF05362 Lon protease (S16) C-terminal proteolytic domain VPUCM_21325 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VPUCM_21325 PF00005 ABC transporter VPUCM_21326 PF00326 Prolyl oligopeptidase family VPUCM_21326 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VPUCM_21327 PF03466 LysR substrate binding domain VPUCM_21327 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_21328 PF02652 L-lactate permease VPUCM_21329 PF01070 FMN-dependent dehydrogenase VPUCM_21331 PF00924 Mechanosensitive ion channel VPUCM_21332 PF00194 Eukaryotic-type carbonic anhydrase VPUCM_21338 PF08240 Alcohol dehydrogenase GroES-like domain VPUCM_21338 PF00107 Zinc-binding dehydrogenase VPUCM_21339 PF00155 Aminotransferase class I and II VPUCM_2134 PF10150 Ribonuclease E/G family VPUCM_2134 PF00575 S1 RNA binding domain VPUCM_2134 PF12111 Polyribonucleotide phosphorylase C terminal VPUCM_21340 PF00563 EAL domain VPUCM_21340 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_21340 PF03707 Bacterial signalling protein N terminal repeat VPUCM_21341 PF00497 Bacterial extracellular solute-binding proteins, family 3 VPUCM_21342 PF00266 Aminotransferase class-V VPUCM_21343 PF00080 Copper/zinc superoxide dismutase (SODC) VPUCM_21344 PF00512 His Kinase A (phospho-acceptor) domain VPUCM_21344 PF08448 PAS fold VPUCM_21344 PF00072 Response regulator receiver domain VPUCM_21344 PF13426 PAS domain VPUCM_21344 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_21345 PF00486 Transcriptional regulatory protein, C terminal VPUCM_21345 PF00072 Response regulator receiver domain VPUCM_2135 PF01740 STAS domain VPUCM_2135 PF00916 Sulfate permease family VPUCM_21350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_21350 PF03466 LysR substrate binding domain VPUCM_21351 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VPUCM_21358 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_21358 PF03466 LysR substrate binding domain VPUCM_2136 PF01451 Low molecular weight phosphotyrosine protein phosphatase VPUCM_21361 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VPUCM_21361 PF18269 T3SS EscN ATPase C-terminal domain VPUCM_21363 PF14842 FliG N-terminal domain VPUCM_21363 PF14841 FliG middle domain VPUCM_21363 PF01706 FliG C-terminal domain VPUCM_21364 PF01514 Secretory protein of YscJ/FliF family VPUCM_21364 PF08345 Flagellar M-ring protein C-terminal VPUCM_21365 PF02049 Flagellar hook-basal body complex protein FliE VPUCM_21366 PF00158 Sigma-54 interaction domain VPUCM_21366 PF02954 Bacterial regulatory protein, Fis family VPUCM_21366 PF00072 Response regulator receiver domain VPUCM_21369 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VPUCM_2137 PF12557 Cob(I)alamin adenosyltransferase N terminal VPUCM_2137 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP VPUCM_21370 PF00813 FliP family VPUCM_21371 PF01313 Bacterial export proteins, family 3 VPUCM_21372 PF01311 Bacterial export proteins, family 1 VPUCM_21373 PF01312 FlhB HrpN YscU SpaS Family VPUCM_21374 PF00771 FHIPEP family VPUCM_21376 PF00669 Bacterial flagellin N-terminal helical region VPUCM_21376 PF00700 Bacterial flagellin C-terminal helical region VPUCM_21378 PF07196 Flagellin hook IN motif VPUCM_21378 PF07195 Flagellar hook-associated protein 2 C-terminus VPUCM_21378 PF02465 Flagellar hook-associated protein 2 N-terminus VPUCM_21379 PF02561 Flagellar protein FliS VPUCM_21382 PF03748 Flagellar basal body-associated protein FliL VPUCM_21383 PF04542 Sigma-70 region 2 VPUCM_21383 PF04545 Sigma-70, region 4 VPUCM_21384 PF01618 MotA/TolQ/ExbB proton channel family VPUCM_21385 PF13677 Membrane MotB of proton-channel complex MotA/MotB VPUCM_21385 PF00691 OmpA family VPUCM_21387 PF08000 Bacterial PH domain VPUCM_2139 PF00485 Phosphoribulokinase / Uridine kinase family VPUCM_21393 PF04055 Radical SAM superfamily VPUCM_21394 PF00923 Transaldolase/Fructose-6-phosphate aldolase VPUCM_21396 PF00583 Acetyltransferase (GNAT) family VPUCM_21398 PF07690 Major Facilitator Superfamily VPUCM_21399 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_21399 PF03466 LysR substrate binding domain VPUCM_2140 PF10609 NUBPL iron-transfer P-loop NTPase VPUCM_21400 PF00892 EamA-like transporter family VPUCM_21405 PF13533 Biotin-lipoyl like VPUCM_21407 PF01594 AI-2E family transporter VPUCM_21408 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VPUCM_2141 PF09334 tRNA synthetases class I (M) VPUCM_2141 PF01588 Putative tRNA binding domain VPUCM_21410 PF00970 Oxidoreductase FAD-binding domain VPUCM_21410 PF00175 Oxidoreductase NAD-binding domain VPUCM_21412 PF09905 DNA-binding protein VF530 VPUCM_21413 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_21413 PF03466 LysR substrate binding domain VPUCM_21415 PF00881 Nitroreductase family VPUCM_21416 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term VPUCM_21416 PF12833 Helix-turn-helix domain VPUCM_21417 PF00128 Alpha amylase, catalytic domain VPUCM_21417 PF00686 Starch binding domain VPUCM_21418 PF00768 D-alanyl-D-alanine carboxypeptidase VPUCM_21418 PF07943 Penicillin-binding protein 5, C-terminal domain VPUCM_21419 PF00561 alpha/beta hydrolase fold VPUCM_21422 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading VPUCM_21422 PF18416 N-acetylglucosamine binding protein domain 2 VPUCM_21423 PF01734 Patatin-like phospholipase VPUCM_21424 PF01914 MarC family integral membrane protein VPUCM_21425 PF00881 Nitroreductase family VPUCM_21428 PF08803 Putative mono-oxygenase ydhR VPUCM_21429 PF03466 LysR substrate binding domain VPUCM_21429 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_2143 PF07840 FadR C-terminal domain VPUCM_2143 PF00392 Bacterial regulatory proteins, gntR family VPUCM_21431 PF00375 Sodium:dicarboxylate symporter family VPUCM_21432 PF06803 Protein of unknown function (DUF1232) VPUCM_21433 PF01546 Peptidase family M20/M25/M40 VPUCM_21433 PF07687 Peptidase dimerisation domain VPUCM_21434 PF07670 Nucleoside recognition VPUCM_21435 PF07670 Nucleoside recognition VPUCM_21438 PF00128 Alpha amylase, catalytic domain VPUCM_21439 PF00912 Transglycosylase VPUCM_2144 PF06450 Bacterial Na+/H+ antiporter B (NhaB) VPUCM_21440 PF02806 Alpha amylase, C-terminal all-beta domain VPUCM_21440 PF00128 Alpha amylase, catalytic domain VPUCM_21440 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VPUCM_21441 PF02446 4-alpha-glucanotransferase VPUCM_21442 PF00343 Carbohydrate phosphorylase VPUCM_21444 PF00196 Bacterial regulatory proteins, luxR family VPUCM_21444 PF17874 MalT-like TPR region VPUCM_21448 PF02630 SCO1/SenC VPUCM_21450 PF02378 Phosphotransferase system, EIIC VPUCM_21450 PF00367 phosphotransferase system, EIIB VPUCM_21451 PF03193 RsgA GTPase VPUCM_21452 PF00375 Sodium:dicarboxylate symporter family VPUCM_21454 PF08543 Phosphomethylpyrimidine kinase VPUCM_21456 PF13520 Amino acid permease VPUCM_21457 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VPUCM_21457 PF01276 Orn/Lys/Arg decarboxylase, major domain VPUCM_21457 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VPUCM_2146 PF02600 Disulfide bond formation protein DsbB VPUCM_21460 PF11852 Domain of unknown function (DUF3372) VPUCM_21460 PF03714 Bacterial pullanase-associated domain VPUCM_21460 PF17967 Pullulanase N2 domain VPUCM_21460 PF18494 Pullulanase Ins domain VPUCM_21460 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VPUCM_21461 PF04231 Endonuclease I VPUCM_21462 PF00128 Alpha amylase, catalytic domain VPUCM_21462 PF16657 Maltogenic Amylase, C-terminal domain VPUCM_21462 PF02903 Alpha amylase, N-terminal ig-like domain VPUCM_21465 PF02264 LamB porin VPUCM_21466 PF00128 Alpha amylase, catalytic domain VPUCM_21466 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VPUCM_21468 PF07690 Major Facilitator Superfamily VPUCM_2147 PF03695 Uncharacterised protein family (UPF0149) VPUCM_2147 PF02810 SEC-C motif VPUCM_21470 PF01551 Peptidase family M23 VPUCM_21470 PF04225 Opacity-associated protein A LysM-like domain VPUCM_21472 PF05193 Peptidase M16 inactive domain VPUCM_21472 PF00675 Insulinase (Peptidase family M16) VPUCM_21473 PF00672 HAMP domain VPUCM_21473 PF17200 Single Cache domain 2 VPUCM_21473 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPUCM_21474 PF00005 ABC transporter VPUCM_21475 PF01032 FecCD transport family VPUCM_21476 PF01032 FecCD transport family VPUCM_21477 PF01497 Periplasmic binding protein VPUCM_21478 PF00593 TonB dependent receptor VPUCM_21478 PF07660 Secretin and TonB N terminus short domain VPUCM_21478 PF07715 TonB-dependent Receptor Plug Domain VPUCM_21479 PF00593 TonB dependent receptor VPUCM_21479 PF07715 TonB-dependent Receptor Plug Domain VPUCM_2148 PF01207 Dihydrouridine synthase (Dus) VPUCM_21480 PF02655 ATP-grasp domain VPUCM_21480 PF00206 Lyase VPUCM_21481 PF06276 Ferric iron reductase FhuF-like transporter VPUCM_21481 PF04183 IucA / IucC family VPUCM_21482 PF07690 Major Facilitator Superfamily VPUCM_21483 PF06276 Ferric iron reductase FhuF-like transporter VPUCM_21483 PF04183 IucA / IucC family VPUCM_21484 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VPUCM_21484 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VPUCM_21485 PF01547 Bacterial extracellular solute-binding protein VPUCM_21486 PF00512 His Kinase A (phospho-acceptor) domain VPUCM_21486 PF08521 Two-component sensor kinase N-terminal VPUCM_21486 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_21487 PF00486 Transcriptional regulatory protein, C terminal VPUCM_21487 PF00072 Response regulator receiver domain VPUCM_21488 PF02378 Phosphotransferase system, EIIC VPUCM_21488 PF00367 phosphotransferase system, EIIB VPUCM_2149 PF16331 TolA binding protein trimerisation VPUCM_2149 PF13174 Tetratricopeptide repeat VPUCM_21493 PF00535 Glycosyl transferase family 2 VPUCM_21497 PF02566 OsmC-like protein VPUCM_21498 PF01047 MarR family VPUCM_21499 PF00578 AhpC/TSA family VPUCM_21499 PF10417 C-terminal domain of 1-Cys peroxiredoxin VPUCM_2150 PF00691 OmpA family VPUCM_21500 PF13192 Thioredoxin domain VPUCM_21500 PF07992 Pyridine nucleotide-disulphide oxidoreductase VPUCM_21503 PF03466 LysR substrate binding domain VPUCM_21503 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_21504 PF12833 Helix-turn-helix domain VPUCM_21504 PF01965 DJ-1/PfpI family VPUCM_21505 PF08281 Sigma-70, region 4 VPUCM_21505 PF04542 Sigma-70 region 2 VPUCM_21508 PF00672 HAMP domain VPUCM_21508 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPUCM_21508 PF02743 Cache domain VPUCM_21509 PF03466 LysR substrate binding domain VPUCM_21509 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_2151 PF04052 TolB amino-terminal domain VPUCM_2151 PF07676 WD40-like Beta Propeller Repeat VPUCM_21510 PF11975 Family 4 glycosyl hydrolase C-terminal domain VPUCM_21510 PF02056 Family 4 glycosyl hydrolase VPUCM_21513 PF03475 3-alpha domain VPUCM_21513 PF03473 MOSC domain VPUCM_21514 PF00270 DEAD/DEAH box helicase VPUCM_21514 PF00271 Helicase conserved C-terminal domain VPUCM_21518 PF06719 AraC-type transcriptional regulator N-terminus VPUCM_21518 PF12833 Helix-turn-helix domain VPUCM_21520 PF00005 ABC transporter VPUCM_21520 PF00664 ABC transporter transmembrane region VPUCM_21522 PF01037 Lrp/AsnC ligand binding domain VPUCM_21529 PF00474 Sodium:solute symporter family VPUCM_2153 PF02472 Biopolymer transport protein ExbD/TolR VPUCM_21531 PF18327 Proline utilization A proline dehydrogenase N-terminal domain VPUCM_21531 PF14850 DNA-binding domain of Proline dehydrogenase VPUCM_21531 PF01619 Proline dehydrogenase VPUCM_21531 PF00171 Aldehyde dehydrogenase family VPUCM_21532 PF12833 Helix-turn-helix domain VPUCM_21534 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region VPUCM_21534 PF01243 Pyridoxamine 5'-phosphate oxidase VPUCM_21535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_21535 PF00512 His Kinase A (phospho-acceptor) domain VPUCM_21535 PF02743 Cache domain VPUCM_21536 PF00158 Sigma-54 interaction domain VPUCM_21536 PF00072 Response regulator receiver domain VPUCM_21536 PF02954 Bacterial regulatory protein, Fis family VPUCM_21537 PF00529 HlyD membrane-fusion protein of T1SS VPUCM_2154 PF01618 MotA/TolQ/ExbB proton channel family VPUCM_21540 PF00664 ABC transporter transmembrane region VPUCM_21540 PF00005 ABC transporter VPUCM_21540 PF03412 Peptidase C39 family VPUCM_21543 PF03358 NADPH-dependent FMN reductase VPUCM_21544 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VPUCM_21545 PF00246 Zinc carboxypeptidase VPUCM_21546 PF01380 SIS domain VPUCM_21546 PF01418 Helix-turn-helix domain, rpiR family VPUCM_21547 PF01380 SIS domain VPUCM_21548 PF02378 Phosphotransferase system, EIIC VPUCM_21548 PF00367 phosphotransferase system, EIIB VPUCM_21549 PF00267 Gram-negative porin VPUCM_2155 PF03061 Thioesterase superfamily VPUCM_21550 PF03575 Peptidase family S51 VPUCM_21551 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_21551 PF03466 LysR substrate binding domain VPUCM_21552 PF00132 Bacterial transferase hexapeptide (six repeats) VPUCM_21554 PF05127 Helicase VPUCM_21554 PF13718 GNAT acetyltransferase 2 VPUCM_21555 PF02195 ParB-like nuclease domain VPUCM_21555 PF08775 ParB family VPUCM_21556 PF18607 ParA helix turn helix domain VPUCM_21556 PF13614 AAA domain VPUCM_2157 PF02322 Cytochrome bd terminal oxidase subunit II VPUCM_2158 PF01654 Cytochrome bd terminal oxidase subunit I VPUCM_2159 PF05491 RuvB C-terminal winged helix domain VPUCM_2159 PF17864 RuvB AAA lid domain VPUCM_2159 PF05496 Holliday junction DNA helicase RuvB P-loop domain VPUCM_2160 PF01330 RuvA N terminal domain VPUCM_2160 PF07499 RuvA, C-terminal domain VPUCM_2161 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPUCM_2161 PF00672 HAMP domain VPUCM_2161 PF02203 Tar ligand binding domain homologue VPUCM_2162 PF02075 Crossover junction endodeoxyribonuclease RuvC VPUCM_2163 PF01336 OB-fold nucleic acid binding domain VPUCM_2163 PF00152 tRNA synthetases class II (D, K and N) VPUCM_2163 PF02938 GAD domain VPUCM_2165 PF01904 Protein of unknown function DUF72 VPUCM_2166 PF13649 Methyltransferase domain VPUCM_2167 PF08003 Protein of unknown function (DUF1698) VPUCM_2168 PF18030 RimK PreATP-grasp domain VPUCM_2168 PF08443 RimK-like ATP-grasp domain VPUCM_2170 PF18030 RimK PreATP-grasp domain VPUCM_2170 PF08443 RimK-like ATP-grasp domain VPUCM_2172 PF16330 MukB hinge domain VPUCM_2172 PF04310 MukB N-terminal VPUCM_2173 PF04288 MukE-like family VPUCM_2174 PF17193 MukF C-terminal domain VPUCM_2174 PF03882 MukF winged-helix domain VPUCM_2174 PF17192 MukF middle domain VPUCM_2176 PF02698 DUF218 domain VPUCM_2177 PF00486 Transcriptional regulatory protein, C terminal VPUCM_2177 PF00072 Response regulator receiver domain VPUCM_2178 PF02613 Nitrate reductase delta subunit VPUCM_2179 PF00356 Bacterial regulatory proteins, lacI family VPUCM_2180 PF04993 TfoX N-terminal domain VPUCM_2180 PF04994 TfoX C-terminal domain VPUCM_2184 PF00534 Glycosyl transferases group 1 VPUCM_2184 PF08323 Starch synthase catalytic domain VPUCM_2185 PF00483 Nucleotidyl transferase VPUCM_2186 PF01396 Topoisomerase DNA binding C4 zinc finger VPUCM_2186 PF01751 Toprim domain VPUCM_2186 PF08272 Topoisomerase I zinc-ribbon-like VPUCM_2186 PF01131 DNA topoisomerase VPUCM_2187 PF10692 Protein of unknown function (DUF2498) VPUCM_2188 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VPUCM_2190 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VPUCM_2191 PF04377 Arginine-tRNA-protein transferase, C terminus VPUCM_2191 PF04376 Arginine-tRNA-protein transferase, N terminus VPUCM_2192 PF01176 Translation initiation factor 1A / IF-1 VPUCM_2194 PF17871 AAA lid domain VPUCM_2194 PF02861 Clp amino terminal domain, pathogenicity island component VPUCM_2194 PF10431 C-terminal, D2-small domain, of ClpB protein VPUCM_2194 PF07724 AAA domain (Cdc48 subfamily) VPUCM_2194 PF00004 ATPase family associated with various cellular activities (AAA) VPUCM_2195 PF02617 ATP-dependent Clp protease adaptor protein ClpS VPUCM_2196 PF00313 'Cold-shock' DNA-binding domain VPUCM_2197 PF03971 Monomeric isocitrate dehydrogenase VPUCM_2198 PF00849 RNA pseudouridylate synthase VPUCM_2199 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VPUCM_2201 PF13307 Helicase C-terminal domain VPUCM_2201 PF06733 DEAD_2 VPUCM_2202 PF01925 Sulfite exporter TauE/SafE VPUCM_2203 PF07445 Primosomal replication protein priC VPUCM_2204 PF10689 Protein of unknown function (DUF2496) VPUCM_2205 PF03372 Endonuclease/Exonuclease/phosphatase family VPUCM_2207 PF02508 Rnf-Nqr subunit, membrane protein VPUCM_2208 PF04060 Putative Fe-S cluster VPUCM_2209 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VPUCM_2209 PF13375 RnfC Barrel sandwich hybrid domain VPUCM_2209 PF12838 4Fe-4S dicluster domain VPUCM_2209 PF10531 SLBB domain VPUCM_2210 PF03116 NQR2, RnfD, RnfE family VPUCM_2211 PF04205 FMN-binding domain VPUCM_2212 PF02508 Rnf-Nqr subunit, membrane protein VPUCM_2213 PF00730 HhH-GPD superfamily base excision DNA repair protein VPUCM_2213 PF00633 Helix-hairpin-helix motif VPUCM_2213 PF10576 Iron-sulfur binding domain of endonuclease III VPUCM_2214 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VPUCM_2215 PF10952 Protein of unknown function (DUF2753) VPUCM_2216 PF00691 OmpA family VPUCM_2216 PF18393 MotY N-terminal domain VPUCM_2217 PF00929 Exonuclease VPUCM_2218 PF13726 Na+-H+ antiporter family VPUCM_2218 PF03553 Na+/H+ antiporter family VPUCM_2220 PF00462 Glutaredoxin VPUCM_2221 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VPUCM_2221 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VPUCM_2224 PF00465 Iron-containing alcohol dehydrogenase VPUCM_2224 PF00171 Aldehyde dehydrogenase family VPUCM_2225 PF01914 MarC family integral membrane protein VPUCM_2226 PF00027 Cyclic nucleotide-binding domain VPUCM_2226 PF00520 Ion transport protein VPUCM_2227 PF01118 Semialdehyde dehydrogenase, NAD binding domain VPUCM_2227 PF02774 Semialdehyde dehydrogenase, dimerisation domain VPUCM_2228 PF03553 Na+/H+ antiporter family VPUCM_2231 PF04245 37-kD nucleoid-associated bacterial protein VPUCM_2232 PF07208 Protein of unknown function (DUF1414) VPUCM_2233 PF00884 Sulfatase VPUCM_2233 PF11893 Domain of unknown function (DUF3413) VPUCM_2234 PF00850 Histone deacetylase domain VPUCM_2235 PF00106 short chain dehydrogenase VPUCM_2237 PF01751 Toprim domain VPUCM_2237 PF01131 DNA topoisomerase VPUCM_2238 PF00881 Nitroreductase family VPUCM_2239 PF07992 Pyridine nucleotide-disulphide oxidoreductase VPUCM_2239 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VPUCM_2240 PF01343 Peptidase family S49 VPUCM_2241 PF17763 Glutaminase/Asparaginase C-terminal domain VPUCM_2241 PF00710 Asparaginase, N-terminal VPUCM_2242 PF07023 Protein of unknown function (DUF1315) VPUCM_2244 PF01641 SelR domain VPUCM_2245 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VPUCM_2245 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VPUCM_2246 PF01263 Aldose 1-epimerase VPUCM_2247 PF00672 HAMP domain VPUCM_2247 PF02743 Cache domain VPUCM_2247 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPUCM_2248 PF13847 Methyltransferase domain VPUCM_2251 PF00245 Alkaline phosphatase VPUCM_2253 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VPUCM_2254 PF03992 Antibiotic biosynthesis monooxygenase VPUCM_2255 PF00924 Mechanosensitive ion channel VPUCM_2255 PF05552 Conserved TM helix VPUCM_2256 PF04226 Transglycosylase associated protein VPUCM_2257 PF03692 Putative zinc- or iron-chelating domain VPUCM_2259 PF03313 Serine dehydratase alpha chain VPUCM_2260 PF01042 Endoribonuclease L-PSP VPUCM_2263 PF00230 Major intrinsic protein VPUCM_2264 PF13662 Toprim domain VPUCM_2264 PF02132 RecR protein VPUCM_2265 PF02575 YbaB/EbfC DNA-binding family VPUCM_2266 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding VPUCM_2266 PF12170 DNA polymerase III tau subunit V interacting with alpha VPUCM_2266 PF12169 DNA polymerase III subunits gamma and tau domain III VPUCM_2267 PF00156 Phosphoribosyl transferase domain VPUCM_2268 PF04304 Protein of unknown function (DUF454) VPUCM_2270 PF00072 Response regulator receiver domain VPUCM_2271 PF03466 LysR substrate binding domain VPUCM_2271 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_2272 PF13340 Putative transposase of IS4/5 family (DUF4096) VPUCM_2274 PF00156 Phosphoribosyl transferase domain VPUCM_2275 PF02674 Colicin V production protein VPUCM_2276 PF05036 Sporulation related domain VPUCM_2277 PF08245 Mur ligase middle domain VPUCM_2277 PF02875 Mur ligase family, glutamate ligase domain VPUCM_2278 PF17848 Acetyl-coA carboxylase zinc finger domain VPUCM_2278 PF01039 Carboxyl transferase domain VPUCM_2279 PF01416 tRNA pseudouridine synthase VPUCM_2281 PF01118 Semialdehyde dehydrogenase, NAD binding domain VPUCM_2281 PF02774 Semialdehyde dehydrogenase, dimerisation domain VPUCM_2282 PF11890 Domain of unknown function (DUF3410) VPUCM_2282 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VPUCM_2282 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VPUCM_2283 PF00109 Beta-ketoacyl synthase, N-terminal domain VPUCM_2283 PF02801 Beta-ketoacyl synthase, C-terminal domain VPUCM_2284 PF01266 FAD dependent oxidoreductase VPUCM_2284 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VPUCM_2285 PF03358 NADPH-dependent FMN reductase VPUCM_2286 PF08891 YfcL protein VPUCM_2287 PF04315 Elongation factor P hydroxylase VPUCM_2289 PF03458 UPF0126 domain VPUCM_2290 PF01264 Chorismate synthase VPUCM_2291 PF05175 Methyltransferase small domain VPUCM_2292 PF01713 Smr domain VPUCM_2293 PF00300 Histidine phosphatase superfamily (branch 1) VPUCM_2294 PF05193 Peptidase M16 inactive domain VPUCM_2294 PF00675 Insulinase (Peptidase family M16) VPUCM_2294 PF16187 Middle or third domain of peptidase_M16 VPUCM_2296 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VPUCM_2296 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VPUCM_2296 PF00378 Enoyl-CoA hydratase/isomerase VPUCM_2297 PF02803 Thiolase, C-terminal domain VPUCM_2297 PF00108 Thiolase, N-terminal domain VPUCM_2298 PF08281 Sigma-70, region 4 VPUCM_2298 PF04542 Sigma-70 region 2 VPUCM_2300 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VPUCM_2301 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VPUCM_2302 PF04333 MlaA lipoprotein VPUCM_2304 PF03918 Cytochrome C biogenesis protein VPUCM_2305 PF08534 Redoxin VPUCM_2306 PF01578 Cytochrome C assembly protein VPUCM_2306 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VPUCM_2307 PF03100 CcmE VPUCM_2308 PF04995 Heme exporter protein D (CcmD) VPUCM_2309 PF01578 Cytochrome C assembly protein VPUCM_2310 PF03379 CcmB protein VPUCM_2311 PF00005 ABC transporter VPUCM_2313 PF01584 CheW-like domain VPUCM_2315 PF13614 AAA domain VPUCM_2316 PF01339 CheB methylesterase VPUCM_2316 PF00072 Response regulator receiver domain VPUCM_2317 PF07194 P2 response regulator binding domain VPUCM_2317 PF01627 Hpt domain VPUCM_2317 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_2317 PF01584 CheW-like domain VPUCM_2317 PF02895 Signal transducing histidine kinase, homodimeric domain VPUCM_2318 PF04344 Chemotaxis phosphatase, CheZ VPUCM_2319 PF00072 Response regulator receiver domain VPUCM_2320 PF04539 Sigma-70 region 3 VPUCM_2320 PF04542 Sigma-70 region 2 VPUCM_2320 PF04545 Sigma-70, region 4 VPUCM_2321 PF10609 NUBPL iron-transfer P-loop NTPase VPUCM_2322 PF00448 SRP54-type protein, GTPase domain VPUCM_2323 PF00771 FHIPEP family VPUCM_2324 PF01312 FlhB HrpN YscU SpaS Family VPUCM_2325 PF01311 Bacterial export proteins, family 1 VPUCM_2326 PF01313 Bacterial export proteins, family 3 VPUCM_2327 PF00813 FliP family VPUCM_2328 PF04347 Flagellar biosynthesis protein, FliO VPUCM_2329 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VPUCM_2330 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VPUCM_2330 PF02154 Flagellar motor switch protein FliM VPUCM_2334 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VPUCM_2334 PF18269 T3SS EscN ATPase C-terminal domain VPUCM_2336 PF14842 FliG N-terminal domain VPUCM_2336 PF01706 FliG C-terminal domain VPUCM_2336 PF14841 FliG middle domain VPUCM_2337 PF01514 Secretory protein of YscJ/FliF family VPUCM_2337 PF08345 Flagellar M-ring protein C-terminal VPUCM_2338 PF02049 Flagellar hook-basal body complex protein FliE VPUCM_2339 PF02954 Bacterial regulatory protein, Fis family VPUCM_2339 PF00072 Response regulator receiver domain VPUCM_2339 PF00158 Sigma-54 interaction domain VPUCM_2340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_2340 PF00512 His Kinase A (phospho-acceptor) domain VPUCM_2341 PF02954 Bacterial regulatory protein, Fis family VPUCM_2341 PF01590 GAF domain VPUCM_2341 PF00158 Sigma-54 interaction domain VPUCM_2342 PF02561 Flagellar protein FliS VPUCM_2344 PF07196 Flagellin hook IN motif VPUCM_2344 PF07195 Flagellar hook-associated protein 2 C-terminus VPUCM_2344 PF02465 Flagellar hook-associated protein 2 N-terminus VPUCM_2345 PF03646 FlaG protein VPUCM_2346 PF00669 Bacterial flagellin N-terminal helical region VPUCM_2346 PF00700 Bacterial flagellin C-terminal helical region VPUCM_2346 PF07196 Flagellin hook IN motif VPUCM_2347 PF00669 Bacterial flagellin N-terminal helical region VPUCM_2347 PF07196 Flagellin hook IN motif VPUCM_2347 PF00700 Bacterial flagellin C-terminal helical region VPUCM_2348 PF07196 Flagellin hook IN motif VPUCM_2348 PF00700 Bacterial flagellin C-terminal helical region VPUCM_2348 PF00669 Bacterial flagellin N-terminal helical region VPUCM_2349 PF04261 Dyp-type peroxidase family VPUCM_2350 PF11143 Protein of unknown function (DUF2919) VPUCM_2354 PF03960 ArsC family VPUCM_2355 PF07687 Peptidase dimerisation domain VPUCM_2355 PF01546 Peptidase family M20/M25/M40 VPUCM_2359 PF00701 Dihydrodipicolinate synthetase family VPUCM_2360 PF01842 ACT domain VPUCM_2361 PF00578 AhpC/TSA family VPUCM_2362 PF01594 AI-2E family transporter VPUCM_2364 PF13181 Tetratricopeptide repeat VPUCM_2364 PF01435 Peptidase family M48 VPUCM_2365 PF03960 ArsC family VPUCM_2366 PF03358 NADPH-dependent FMN reductase VPUCM_2370 PF00860 Permease family VPUCM_2372 PF02769 AIR synthase related protein, C-terminal domain VPUCM_2372 PF00586 AIR synthase related protein, N-terminal domain VPUCM_2373 PF00551 Formyl transferase VPUCM_2374 PF00549 CoA-ligase VPUCM_2374 PF02629 CoA binding domain VPUCM_2375 PF00549 CoA-ligase VPUCM_2375 PF08442 ATP-grasp domain VPUCM_2376 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VPUCM_2376 PF00364 Biotin-requiring enzyme VPUCM_2376 PF02817 e3 binding domain VPUCM_2377 PF02779 Transketolase, pyrimidine binding domain VPUCM_2377 PF16870 2-oxoglutarate dehydrogenase C-terminal VPUCM_2377 PF00676 Dehydrogenase E1 component VPUCM_2377 PF16078 2-oxoglutarate dehydrogenase N-terminus VPUCM_2378 PF13085 2Fe-2S iron-sulfur cluster binding domain VPUCM_2379 PF02910 Fumarate reductase flavoprotein C-term VPUCM_2379 PF00890 FAD binding domain VPUCM_2380 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VPUCM_2381 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VPUCM_2382 PF00285 Citrate synthase, C-terminal domain VPUCM_2383 PF01784 NIF3 (NGG1p interacting factor 3) VPUCM_2385 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VPUCM_2385 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VPUCM_2385 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VPUCM_2385 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VPUCM_2386 PF03925 SeqA protein C-terminal domain VPUCM_2386 PF17206 SeqA protein N-terminal domain VPUCM_2387 PF12697 Alpha/beta hydrolase family VPUCM_2389 PF00258 Flavodoxin VPUCM_2390 PF01118 Semialdehyde dehydrogenase, NAD binding domain VPUCM_2390 PF02774 Semialdehyde dehydrogenase, dimerisation domain VPUCM_2391 PF01475 Ferric uptake regulator family VPUCM_2392 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain VPUCM_2392 PF00749 tRNA synthetases class I (E and Q), catalytic domain VPUCM_2393 PF02378 Phosphotransferase system, EIIC VPUCM_2393 PF00367 phosphotransferase system, EIIB VPUCM_2394 PF01979 Amidohydrolase family VPUCM_2395 PF00480 ROK family VPUCM_2395 PF01047 MarR family VPUCM_2396 PF00999 Sodium/hydrogen exchanger family VPUCM_2396 PF02254 TrkA-N domain VPUCM_2397 PF13537 Glutamine amidotransferase domain VPUCM_2397 PF00733 Asparagine synthase VPUCM_2398 PF02357 Transcription termination factor nusG VPUCM_2399 PF00854 POT family VPUCM_2400 PF00762 Ferrochelatase VPUCM_2401 PF05191 Adenylate kinase, active site lid VPUCM_2402 PF00183 Hsp90 protein VPUCM_2402 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_2403 PF00486 Transcriptional regulatory protein, C terminal VPUCM_2404 PF17323 Trans-membrane regulatory protein ToxS VPUCM_2407 PF12850 Calcineurin-like phosphoesterase superfamily domain VPUCM_2410 PF07556 Protein of unknown function (DUF1538) VPUCM_2411 PF07556 Protein of unknown function (DUF1538) VPUCM_2412 PF01370 NAD dependent epimerase/dehydratase family VPUCM_2412 PF08338 Domain of unknown function (DUF1731) VPUCM_2413 PF00106 short chain dehydrogenase VPUCM_2414 PF00085 Thioredoxin VPUCM_2415 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) VPUCM_2416 PF01270 Glycosyl hydrolases family 8 VPUCM_2417 PF03170 Bacterial cellulose synthase subunit VPUCM_2418 PF00535 Glycosyl transferase family 2 VPUCM_2418 PF03552 Cellulose synthase VPUCM_2418 PF07238 PilZ domain VPUCM_2420 PF06564 Cellulose biosynthesis protein BcsQ VPUCM_2422 PF10995 Cellulose biosynthesis GIL VPUCM_2424 PF11658 Cellulose biosynthesis protein BcsG VPUCM_2425 PF01145 SPFH domain / Band 7 family VPUCM_2425 PF16200 C-terminal region of band_7 VPUCM_2427 PF03573 outer membrane porin, OprD family VPUCM_2428 PF12826 Helix-hairpin-helix motif VPUCM_2428 PF03119 NAD-dependent DNA ligase C4 zinc finger domain VPUCM_2428 PF03120 NAD-dependent DNA ligase OB-fold domain VPUCM_2428 PF01653 NAD-dependent DNA ligase adenylation domain VPUCM_2428 PF00533 BRCA1 C Terminus (BRCT) domain VPUCM_2429 PF04354 ZipA, C-terminal FtsZ-binding domain VPUCM_2431 PF00291 Pyridoxal-phosphate dependent enzyme VPUCM_2432 PF00381 PTS HPr component phosphorylation site VPUCM_2433 PF05524 PEP-utilising enzyme, N-terminal VPUCM_2433 PF00391 PEP-utilising enzyme, mobile domain VPUCM_2433 PF02896 PEP-utilising enzyme, TIM barrel domain VPUCM_2434 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VPUCM_2435 PF00669 Bacterial flagellin N-terminal helical region VPUCM_2435 PF07196 Flagellin hook IN motif VPUCM_2435 PF00700 Bacterial flagellin C-terminal helical region VPUCM_2436 PF00700 Bacterial flagellin C-terminal helical region VPUCM_2436 PF07196 Flagellin hook IN motif VPUCM_2436 PF00669 Bacterial flagellin N-terminal helical region VPUCM_2437 PF00669 Bacterial flagellin N-terminal helical region VPUCM_2437 PF07196 Flagellin hook IN motif VPUCM_2437 PF00700 Bacterial flagellin C-terminal helical region VPUCM_2439 PF00669 Bacterial flagellin N-terminal helical region VPUCM_2440 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VPUCM_2440 PF07196 Flagellin hook IN motif VPUCM_2441 PF10135 Rod binding protein VPUCM_2441 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VPUCM_2442 PF02119 Flagellar P-ring protein VPUCM_2443 PF02107 Flagellar L-ring protein VPUCM_2444 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VPUCM_2444 PF00460 Flagella basal body rod protein VPUCM_2445 PF00460 Flagella basal body rod protein VPUCM_2445 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VPUCM_2447 PF07559 Flagellar basal body protein FlaE VPUCM_2447 PF00460 Flagella basal body rod protein VPUCM_2447 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VPUCM_2448 PF13861 FlgD Tudor-like domain VPUCM_2448 PF03963 Flagellar hook capping protein - N-terminal region VPUCM_2448 PF13860 FlgD Ig-like domain VPUCM_2449 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VPUCM_2449 PF00460 Flagella basal body rod protein VPUCM_2450 PF00460 Flagella basal body rod protein VPUCM_2451 PF03705 CheR methyltransferase, all-alpha domain VPUCM_2451 PF01739 CheR methyltransferase, SAM binding domain VPUCM_2452 PF00072 Response regulator receiver domain VPUCM_2452 PF01584 CheW-like domain VPUCM_2461 PF01389 OmpA-like transmembrane domain VPUCM_2461 PF00691 OmpA family VPUCM_2462 PF00749 tRNA synthetases class I (E and Q), catalytic domain VPUCM_2463 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VPUCM_2464 PF13609 Gram-negative porin VPUCM_2466 PF00403 Heavy-metal-associated domain VPUCM_2469 PF02838 Glycosyl hydrolase family 20, domain 2 VPUCM_2469 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VPUCM_2469 PF03173 Putative carbohydrate binding domain VPUCM_2469 PF00728 Glycosyl hydrolase family 20, catalytic domain VPUCM_2472 PF01713 Smr domain VPUCM_2473 PF00849 RNA pseudouridylate synthase VPUCM_2473 PF01479 S4 domain VPUCM_2474 PF04073 Aminoacyl-tRNA editing domain VPUCM_2475 PF02872 5'-nucleotidase, C-terminal domain VPUCM_2475 PF00149 Calcineurin-like phosphoesterase VPUCM_2476 PF00793 DAHP synthetase I family VPUCM_2477 PF13369 Transglutaminase-like superfamily VPUCM_2478 PF04247 Invasion gene expression up-regulator, SirB VPUCM_2479 PF17827 PrmC N-terminal domain VPUCM_2479 PF13847 Methyltransferase domain VPUCM_2480 PF03462 PCRF domain VPUCM_2480 PF00472 RF-1 domain VPUCM_2481 PF01488 Shikimate / quinate 5-dehydrogenase VPUCM_2481 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain VPUCM_2481 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain VPUCM_2482 PF03550 Outer membrane lipoprotein LolB VPUCM_2483 PF00288 GHMP kinases N terminal domain VPUCM_2483 PF08544 GHMP kinases C terminal VPUCM_2484 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VPUCM_2484 PF14572 Phosphoribosyl synthetase-associated domain VPUCM_2485 PF01195 Peptidyl-tRNA hydrolase VPUCM_2486 PF01926 50S ribosome-binding GTPase VPUCM_2486 PF06071 Protein of unknown function (DUF933) VPUCM_2488 PF01494 FAD binding domain VPUCM_2489 PF01938 TRAM domain VPUCM_2489 PF00919 Uncharacterized protein family UPF0004 VPUCM_2489 PF04055 Radical SAM superfamily VPUCM_2490 PF02562 PhoH-like protein VPUCM_2491 PF02130 Uncharacterized protein family UPF0054 VPUCM_2492 PF03471 Transporter associated domain VPUCM_2492 PF00571 CBS domain VPUCM_2493 PF00795 Carbon-nitrogen hydrolase VPUCM_2494 PF07295 Zinc-ribbon containing domain VPUCM_2495 PF00133 tRNA synthetases class I (I, L, M and V) VPUCM_2495 PF13603 Leucyl-tRNA synthetase, Domain 2 VPUCM_2495 PF08264 Anticodon-binding domain of tRNA VPUCM_2496 PF04390 Lipopolysaccharide-assembly VPUCM_2497 PF14840 Processivity clamp loader gamma complex DNA pol III C-term VPUCM_2497 PF06144 DNA polymerase III, delta subunit VPUCM_2499 PF02590 Predicted SPOUT methyltransferase VPUCM_2500 PF03717 Penicillin-binding Protein dimerisation domain VPUCM_2500 PF00905 Penicillin binding protein transpeptidase domain VPUCM_2501 PF01098 Cell cycle protein VPUCM_2502 PF03330 Lytic transglycolase VPUCM_2502 PF05036 Sporulation related domain VPUCM_2503 PF07943 Penicillin-binding protein 5, C-terminal domain VPUCM_2503 PF00768 D-alanyl-D-alanine carboxypeptidase VPUCM_2504 PF04359 Protein of unknown function (DUF493) VPUCM_2505 PF03099 Biotin/lipoate A/B protein ligase family VPUCM_2506 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family VPUCM_2506 PF04055 Radical SAM superfamily VPUCM_2507 PF00464 Serine hydroxymethyltransferase VPUCM_2508 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) VPUCM_2508 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 VPUCM_2511 PF16657 Maltogenic Amylase, C-terminal domain VPUCM_2511 PF00128 Alpha amylase, catalytic domain VPUCM_2512 PF00367 phosphotransferase system, EIIB VPUCM_2512 PF02378 Phosphotransferase system, EIIC VPUCM_2513 PF00356 Bacterial regulatory proteins, lacI family VPUCM_2516 PF00005 ABC transporter VPUCM_2516 PF09383 NIL domain VPUCM_2517 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_2518 PF03180 NLPA lipoprotein VPUCM_2519 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) VPUCM_2520 PF07348 Syd protein (SUKH-2) VPUCM_2521 PF14489 QueF-like protein VPUCM_2521 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term VPUCM_2523 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_2523 PF00072 Response regulator receiver domain VPUCM_2524 PF11892 Domain of unknown function (DUF3412) VPUCM_2524 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases VPUCM_2524 PF03641 Possible lysine decarboxylase VPUCM_2525 PF01367 5'-3' exonuclease, C-terminal SAM fold VPUCM_2525 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VPUCM_2526 PF01223 DNA/RNA non-specific endonuclease VPUCM_2527 PF18125 RlmM ferredoxin-like domain VPUCM_2527 PF01728 FtsJ-like methyltransferase VPUCM_2528 PF04241 Protein of unknown function (DUF423) VPUCM_2530 PF03466 LysR substrate binding domain VPUCM_2530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_2531 PF02926 THUMP domain VPUCM_2531 PF02568 Thiamine biosynthesis protein (ThiI) VPUCM_2532 PF00691 OmpA family VPUCM_2533 PF01618 MotA/TolQ/ExbB proton channel family VPUCM_2534 PF02609 Exonuclease VII small subunit VPUCM_2535 PF00348 Polyprenyl synthetase VPUCM_2536 PF02779 Transketolase, pyrimidine binding domain VPUCM_2536 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VPUCM_2536 PF02780 Transketolase, C-terminal domain VPUCM_2537 PF04608 Phosphatidylglycerophosphatase A VPUCM_2538 PF00586 AIR synthase related protein, N-terminal domain VPUCM_2538 PF02769 AIR synthase related protein, C-terminal domain VPUCM_2539 PF01029 NusB family VPUCM_2540 PF00885 6,7-dimethyl-8-ribityllumazine synthase VPUCM_2541 PF00925 GTP cyclohydrolase II VPUCM_2541 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VPUCM_2542 PF00677 Lumazine binding domain VPUCM_2543 PF01872 RibD C-terminal domain VPUCM_2543 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VPUCM_2544 PF03477 ATP cone domain VPUCM_2545 PF00171 Aldehyde dehydrogenase family VPUCM_2546 PF00696 Amino acid kinase family VPUCM_2546 PF01472 PUA domain VPUCM_2547 PF07417 Sigma factor-binding transcriptional regulator Crl VPUCM_2549 PF00156 Phosphoribosyl transferase domain VPUCM_2550 PF00860 Permease family VPUCM_2551 PF01546 Peptidase family M20/M25/M40 VPUCM_2551 PF07687 Peptidase dimerisation domain VPUCM_2556 PF02769 AIR synthase related protein, C-terminal domain VPUCM_2556 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain VPUCM_2556 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal VPUCM_2557 PF01464 Transglycosylase SLT domain VPUCM_2557 PF00497 Bacterial extracellular solute-binding proteins, family 3 VPUCM_2558 PF00579 tRNA synthetases class I (W and Y) VPUCM_2559 PF08525 Opacity-associated protein A N-terminal motif VPUCM_2559 PF01551 Peptidase family M23 VPUCM_2559 PF01476 LysM domain VPUCM_2560 PF00873 AcrB/AcrD/AcrF family VPUCM_2562 PF01521 Iron-sulphur cluster biosynthesis VPUCM_2563 PF00202 Aminotransferase class-III VPUCM_2566 PF01594 AI-2E family transporter VPUCM_2567 PF08468 Methyltransferase small domain N-terminal VPUCM_2567 PF05175 Methyltransferase small domain VPUCM_2568 PF00497 Bacterial extracellular solute-binding proteins, family 3 VPUCM_2568 PF00072 Response regulator receiver domain VPUCM_2568 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_2568 PF00512 His Kinase A (phospho-acceptor) domain VPUCM_2569 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VPUCM_2570 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_2571 PF12911 N-terminal TM domain of oligopeptide transport permease C VPUCM_2571 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_2572 PF00005 ABC transporter VPUCM_2572 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VPUCM_2573 PF00005 ABC transporter VPUCM_2573 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VPUCM_2575 PF01869 BadF/BadG/BcrA/BcrD ATPase family VPUCM_2576 PF02838 Glycosyl hydrolase family 20, domain 2 VPUCM_2576 PF00728 Glycosyl hydrolase family 20, catalytic domain VPUCM_2577 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain VPUCM_2577 PF06165 Glycosyltransferase family 36 VPUCM_2578 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VPUCM_2578 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VPUCM_2578 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VPUCM_2579 PF08402 TOBE domain VPUCM_2579 PF00005 ABC transporter VPUCM_2581 PF13416 Bacterial extracellular solute-binding protein VPUCM_2582 PF00909 Ammonium Transporter Family VPUCM_2583 PF00543 Nitrogen regulatory protein P-II VPUCM_2584 PF06062 Uncharacterised protein family (UPF0231) VPUCM_2585 PF11791 Aconitate B N-terminal domain VPUCM_2585 PF00330 Aconitase family (aconitate hydratase) VPUCM_2585 PF06434 Aconitate hydratase 2 N-terminus VPUCM_2586 PF01734 Patatin-like phospholipase VPUCM_2587 PF00905 Penicillin binding protein transpeptidase domain VPUCM_2587 PF00912 Transglycosylase VPUCM_2587 PF14814 Bifunctional transglycosylase second domain VPUCM_2588 PF08482 ATP-dependent helicase C-terminal VPUCM_2588 PF04408 Helicase associated domain (HA2) VPUCM_2588 PF00270 DEAD/DEAH box helicase VPUCM_2588 PF00271 Helicase conserved C-terminal domain VPUCM_2589 PF03749 Sugar fermentation stimulation protein RE domain VPUCM_2589 PF17746 SfsA N-terminal OB domain VPUCM_2590 PF01258 Prokaryotic dksA/traR C4-type zinc finger VPUCM_2591 PF00749 tRNA synthetases class I (E and Q), catalytic domain VPUCM_2592 PF01743 Poly A polymerase head domain VPUCM_2592 PF12626 Polymerase A arginine-rich C-terminus VPUCM_2592 PF12627 Probable RNA and SrmB- binding site of polymerase A VPUCM_2593 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VPUCM_2594 PF02548 Ketopantoate hydroxymethyltransferase VPUCM_2595 PF02569 Pantoate-beta-alanine ligase VPUCM_2596 PF03279 Bacterial lipid A biosynthesis acyltransferase VPUCM_2597 PF01061 ABC-2 type transporter VPUCM_2598 PF00005 ABC transporter VPUCM_2599 PF01740 STAS domain VPUCM_2599 PF00916 Sulfate permease family VPUCM_2600 PF00484 Carbonic anhydrase VPUCM_2601 PF00156 Phosphoribosyl transferase domain VPUCM_2602 PF00440 Bacterial regulatory proteins, tetR family VPUCM_2603 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VPUCM_2603 PF07992 Pyridine nucleotide-disulphide oxidoreductase VPUCM_2604 PF02817 e3 binding domain VPUCM_2604 PF00364 Biotin-requiring enzyme VPUCM_2604 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VPUCM_2605 PF17831 Pyruvate dehydrogenase E1 component middle domain VPUCM_2605 PF00456 Transketolase, thiamine diphosphate binding domain VPUCM_2606 PF00392 Bacterial regulatory proteins, gntR family VPUCM_2606 PF07729 FCD domain VPUCM_2607 PF01510 N-acetylmuramoyl-L-alanine amidase VPUCM_2608 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain VPUCM_2608 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain VPUCM_2609 PF00114 Pilin (bacterial filament) VPUCM_2609 PF07963 Prokaryotic N-terminal methylation motif VPUCM_2610 PF00437 Type II/IV secretion system protein VPUCM_2610 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VPUCM_2611 PF00482 Type II secretion system (T2SS), protein F VPUCM_2612 PF01478 Type IV leader peptidase family VPUCM_2612 PF06750 Bacterial Peptidase A24 N-terminal domain VPUCM_2613 PF01121 Dephospho-CoA kinase VPUCM_2614 PF07072 Cell division protein VPUCM_2615 PF03884 DNA gyrase inhibitor YacG VPUCM_2616 PF01245 Ribosomal protein L19 VPUCM_2617 PF01746 tRNA (Guanine-1)-methyltransferase VPUCM_2618 PF05239 PRC-barrel domain VPUCM_2618 PF01782 RimM N-terminal domain VPUCM_2619 PF00886 Ribosomal protein S16 VPUCM_2620 PF00448 SRP54-type protein, GTPase domain VPUCM_2620 PF02881 SRP54-type protein, helical bundle domain VPUCM_2620 PF02978 Signal peptide binding domain VPUCM_2621 PF01578 Cytochrome C assembly protein VPUCM_2622 PF00571 CBS domain VPUCM_2622 PF01595 Cyclin M transmembrane N-terminal domain VPUCM_2622 PF03471 Transporter associated domain VPUCM_2623 PF02664 S-Ribosylhomocysteinase (LuxS) VPUCM_2625 PF04262 Glutamate-cysteine ligase VPUCM_2626 PF00675 Insulinase (Peptidase family M16) VPUCM_2626 PF05193 Peptidase M16 inactive domain VPUCM_2627 PF09335 SNARE associated Golgi protein VPUCM_2628 PF00107 Zinc-binding dehydrogenase VPUCM_2628 PF08240 Alcohol dehydrogenase GroES-like domain VPUCM_2629 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VPUCM_2630 PF00682 HMGL-like VPUCM_2630 PF00364 Biotin-requiring enzyme VPUCM_2630 PF02436 Conserved carboxylase domain VPUCM_2633 PF02599 Global regulator protein family VPUCM_2634 PF01842 ACT domain VPUCM_2634 PF00696 Amino acid kinase family VPUCM_2634 PF13840 ACT domain VPUCM_2635 PF01411 tRNA synthetases class II (A) VPUCM_2635 PF02272 DHHA1 domain VPUCM_2635 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VPUCM_2636 PF02631 RecX family VPUCM_2637 PF00154 recA bacterial DNA recombination protein VPUCM_2638 PF02464 Competence-damaged protein VPUCM_2639 PF01624 MutS domain I VPUCM_2639 PF05188 MutS domain II VPUCM_2639 PF05192 MutS domain III VPUCM_2639 PF05190 MutS family domain IV VPUCM_2639 PF00488 MutS domain V VPUCM_2640 PF04539 Sigma-70 region 3 VPUCM_2640 PF00140 Sigma-70 factor, region 1.2 VPUCM_2640 PF04542 Sigma-70 region 2 VPUCM_2640 PF04545 Sigma-70, region 4 VPUCM_2641 PF01476 LysM domain VPUCM_2641 PF01551 Peptidase family M23 VPUCM_2643 PF01975 Survival protein SurE VPUCM_2644 PF01142 tRNA pseudouridine synthase D (TruD) VPUCM_2645 PF02542 YgbB family VPUCM_2646 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VPUCM_2647 PF04977 Septum formation initiator VPUCM_2648 PF03952 Enolase, N-terminal domain VPUCM_2648 PF00113 Enolase, C-terminal TIM barrel domain VPUCM_2649 PF00117 Glutamine amidotransferase class-I VPUCM_2649 PF06418 CTP synthase N-terminus VPUCM_2650 PF03819 MazG nucleotide pyrophosphohydrolase domain VPUCM_2651 PF02824 TGS domain VPUCM_2651 PF04607 Region found in RelA / SpoT proteins VPUCM_2651 PF13291 ACT domain VPUCM_2652 PF05958 tRNA (Uracil-5-)-methyltransferase VPUCM_2652 PF01938 TRAM domain VPUCM_2653 PF00072 Response regulator receiver domain VPUCM_2653 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VPUCM_2653 PF01627 Hpt domain VPUCM_2653 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_2653 PF00512 His Kinase A (phospho-acceptor) domain VPUCM_2653 PF00672 HAMP domain VPUCM_2654 PF01648 4'-phosphopantetheinyl transferase superfamily VPUCM_2655 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ VPUCM_2656 PF02565 Recombination protein O C terminal VPUCM_2656 PF11967 Recombination protein O N terminal VPUCM_2657 PF01926 50S ribosome-binding GTPase VPUCM_2657 PF07650 KH domain VPUCM_2658 PF00035 Double-stranded RNA binding motif VPUCM_2658 PF14622 Ribonuclease-III-like VPUCM_2659 PF10502 Signal peptidase, peptidase S26 VPUCM_2660 PF06421 GTP-binding protein LepA C-terminus VPUCM_2660 PF03144 Elongation factor Tu domain 2 VPUCM_2660 PF00009 Elongation factor Tu GTP binding domain VPUCM_2660 PF00679 Elongation factor G C-terminus VPUCM_2662 PF03888 MucB/RseB N-terminal domain VPUCM_2662 PF17188 MucB/RseB C-terminal domain VPUCM_2663 PF03872 Anti sigma-E protein RseA, N-terminal domain VPUCM_2663 PF03873 Anti sigma-E protein RseA, C-terminal domain VPUCM_2664 PF08281 Sigma-70, region 4 VPUCM_2664 PF04542 Sigma-70 region 2 VPUCM_2665 PF02910 Fumarate reductase flavoprotein C-term VPUCM_2665 PF00890 FAD binding domain VPUCM_2666 PF03937 Flavinator of succinate dehydrogenase VPUCM_2667 PF01571 Aminomethyltransferase folate-binding domain VPUCM_2669 PF01494 FAD binding domain VPUCM_2670 PF01494 FAD binding domain VPUCM_2671 PF03695 Uncharacterised protein family (UPF0149) VPUCM_2672 PF05164 Cell division protein ZapA VPUCM_2673 PF01812 5-formyltetrahydrofolate cyclo-ligase family VPUCM_2674 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VPUCM_2675 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VPUCM_2675 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VPUCM_2675 PF01842 ACT domain VPUCM_2676 PF04402 Protein of unknown function (DUF541) VPUCM_2677 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_2677 PF03466 LysR substrate binding domain VPUCM_2678 PF01810 LysE type translocator VPUCM_2679 PF04073 Aminoacyl-tRNA editing domain VPUCM_2680 PF05552 Conserved TM helix VPUCM_2680 PF00924 Mechanosensitive ion channel VPUCM_2681 PF01116 Fructose-bisphosphate aldolase class-II VPUCM_2682 PF00162 Phosphoglycerate kinase VPUCM_2684 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VPUCM_2684 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VPUCM_2685 PF07715 TonB-dependent Receptor Plug Domain VPUCM_2685 PF00593 TonB dependent receptor VPUCM_2686 PF03466 LysR substrate binding domain VPUCM_2686 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_2687 PF02779 Transketolase, pyrimidine binding domain VPUCM_2687 PF00456 Transketolase, thiamine diphosphate binding domain VPUCM_2687 PF02780 Transketolase, C-terminal domain VPUCM_2688 PF02773 S-adenosylmethionine synthetase, C-terminal domain VPUCM_2688 PF02772 S-adenosylmethionine synthetase, central domain VPUCM_2688 PF00438 S-adenosylmethionine synthetase, N-terminal domain VPUCM_2690 PF17283 SprT-like zinc ribbon domain VPUCM_2690 PF10263 SprT-like family VPUCM_2691 PF04231 Endonuclease I VPUCM_2692 PF04452 RNA methyltransferase VPUCM_2693 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VPUCM_2693 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VPUCM_2694 PF02622 Uncharacterized ACR, COG1678 VPUCM_2695 PF03652 Holliday junction resolvase VPUCM_2696 PF00437 Type II/IV secretion system protein VPUCM_2697 PF00437 Type II/IV secretion system protein VPUCM_2698 PF01168 Alanine racemase, N-terminal domain VPUCM_2699 PF03807 NADP oxidoreductase coenzyme F420-dependent VPUCM_2699 PF14748 Pyrroline-5-carboxylate reductase dimerisation VPUCM_2700 PF02325 YGGT family VPUCM_2701 PF02594 Uncharacterised ACR, YggU family COG1872 VPUCM_2703 PF01725 Ham1 family VPUCM_2704 PF06969 HemN C-terminal domain VPUCM_2704 PF04055 Radical SAM superfamily VPUCM_2705 PF04960 Glutaminase VPUCM_2706 PF02086 D12 class N6 adenine-specific DNA methyltransferase VPUCM_2707 PF02390 Putative methyltransferase VPUCM_2708 PF00633 Helix-hairpin-helix motif VPUCM_2708 PF14815 NUDIX domain VPUCM_2708 PF00730 HhH-GPD superfamily base excision DNA repair protein VPUCM_2709 PF04362 Bacterial Fe(2+) trafficking VPUCM_2710 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VPUCM_2710 PF01464 Transglycosylase SLT domain VPUCM_2711 PF00672 HAMP domain VPUCM_2711 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPUCM_2711 PF17200 Single Cache domain 2 VPUCM_2712 PF00171 Aldehyde dehydrogenase family VPUCM_2715 PF00072 Response regulator receiver domain VPUCM_2716 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VPUCM_2716 PF00356 Bacterial regulatory proteins, lacI family VPUCM_2717 PF04794 YdjC-like protein VPUCM_2718 PF02056 Family 4 glycosyl hydrolase VPUCM_2718 PF11975 Family 4 glycosyl hydrolase C-terminal domain VPUCM_2719 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit VPUCM_2720 PF02378 Phosphotransferase system, EIIC VPUCM_2722 PF01522 Polysaccharide deacetylase VPUCM_2724 PF00872 Transposase, Mutator family VPUCM_2726 PF13737 Transposase DDE domain VPUCM_2727 PF13737 Transposase DDE domain VPUCM_2730 PF00106 short chain dehydrogenase VPUCM_2731 PF10011 Predicted membrane protein (DUF2254) VPUCM_2733 PF03739 Lipopolysaccharide export system permease LptF/LptG VPUCM_2734 PF03739 Lipopolysaccharide export system permease LptF/LptG VPUCM_2735 PF00883 Cytosol aminopeptidase family, catalytic domain VPUCM_2735 PF02789 Cytosol aminopeptidase family, N-terminal domain VPUCM_2736 PF04364 DNA polymerase III chi subunit, HolC VPUCM_2737 PF08264 Anticodon-binding domain of tRNA VPUCM_2737 PF00133 tRNA synthetases class I (I, L, M and V) VPUCM_2737 PF10458 Valyl tRNA synthetase tRNA binding arm VPUCM_2740 PF00583 Acetyltransferase (GNAT) family VPUCM_2750 PF06877 Regulator of ribonuclease activity B VPUCM_2752 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VPUCM_2752 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VPUCM_2753 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VPUCM_2753 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VPUCM_2754 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VPUCM_2754 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VPUCM_2756 PF01042 Endoribonuclease L-PSP VPUCM_2757 PF01553 Acyltransferase VPUCM_2758 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VPUCM_2759 PF01722 BolA-like protein VPUCM_2761 PF05494 MlaC protein VPUCM_2762 PF02470 MlaD protein VPUCM_2763 PF02405 Permease MlaE VPUCM_2764 PF00005 ABC transporter VPUCM_2765 PF01699 Sodium/calcium exchanger protein VPUCM_2766 PF00571 CBS domain VPUCM_2766 PF01380 SIS domain VPUCM_2768 PF03968 OstA-like protein VPUCM_2769 PF12399 Branched-chain amino acid ATP-binding cassette transporter VPUCM_2769 PF00005 ABC transporter VPUCM_2770 PF04552 Sigma-54, DNA binding domain VPUCM_2770 PF04963 Sigma-54 factor, core binding domain VPUCM_2770 PF00309 Sigma-54 factor, Activator interacting domain (AID) VPUCM_2771 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VPUCM_2772 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VPUCM_2773 PF03668 P-loop ATPase protein family VPUCM_2774 PF00381 PTS HPr component phosphorylation site VPUCM_2775 PF03448 MgtE intracellular N domain VPUCM_2775 PF00571 CBS domain VPUCM_2775 PF01769 Divalent cation transporter VPUCM_2776 PF01523 Putative modulator of DNA gyrase VPUCM_2777 PF04751 Protein of unknown function (DUF615) VPUCM_2778 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VPUCM_2778 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VPUCM_2779 PF00849 RNA pseudouridylate synthase VPUCM_2782 PF00271 Helicase conserved C-terminal domain VPUCM_2782 PF12137 RNA polymerase recycling family C-terminal VPUCM_2782 PF18339 RapA N-terminal Tudor like domain 1 VPUCM_2782 PF18337 RapA N-terminal Tudor like domain VPUCM_2782 PF00176 SNF2 family N-terminal domain VPUCM_2784 PF02562 PhoH-like protein VPUCM_2784 PF13638 PIN domain VPUCM_2785 PF01523 Putative modulator of DNA gyrase VPUCM_2786 PF00795 Carbon-nitrogen hydrolase VPUCM_2787 PF13116 Protein of unknown function VPUCM_2787 PF13502 AsmA-like C-terminal region VPUCM_2788 PF00575 S1 RNA binding domain VPUCM_2788 PF10150 Ribonuclease E/G family VPUCM_2789 PF02545 Maf-like protein VPUCM_2790 PF04093 rod shape-determining protein MreD VPUCM_2791 PF04085 rod shape-determining protein MreC VPUCM_2799 PF07963 Prokaryotic N-terminal methylation motif VPUCM_2799 PF00114 Pilin (bacterial filament) VPUCM_2802 PF00482 Type II secretion system (T2SS), protein F VPUCM_2803 PF00437 Type II/IV secretion system protein VPUCM_2803 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VPUCM_2805 PF13401 AAA domain VPUCM_2805 PF01471 Putative peptidoglycan binding domain VPUCM_2806 PF00263 Bacterial type II and III secretion system protein VPUCM_2806 PF03958 Bacterial type II/III secretion system short domain VPUCM_2806 PF07660 Secretin and TonB N terminus short domain VPUCM_2806 PF11741 AMIN domain VPUCM_2811 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_2811 PF17157 Gammaproteobacterial periplasmic sensor domain VPUCM_2811 PF00563 EAL domain VPUCM_2812 PF00436 Single-strand binding protein family VPUCM_2813 PF00196 Bacterial regulatory proteins, luxR family VPUCM_2814 PF00483 Nucleotidyl transferase VPUCM_2815 PF17760 UvrA interaction domain VPUCM_2815 PF17755 UvrA DNA-binding domain VPUCM_2815 PF00005 ABC transporter VPUCM_2817 PF00266 Aminotransferase class-V VPUCM_2820 PF01842 ACT domain VPUCM_2820 PF00696 Amino acid kinase family VPUCM_2821 PF02965 Vitamin B12 dependent methionine synthase, activation domain VPUCM_2821 PF02574 Homocysteine S-methyltransferase VPUCM_2821 PF00809 Pterin binding enzyme VPUCM_2821 PF02607 B12 binding domain VPUCM_2821 PF02310 B12 binding domain VPUCM_2822 PF00999 Sodium/hydrogen exchanger family VPUCM_2825 PF01507 Phosphoadenosine phosphosulfate reductase family VPUCM_2826 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VPUCM_2826 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VPUCM_2827 PF00175 Oxidoreductase NAD-binding domain VPUCM_2827 PF00258 Flavodoxin VPUCM_2827 PF00667 FAD binding domain VPUCM_2831 PF01207 Dihydrouridine synthase (Dus) VPUCM_2832 PF01475 Ferric uptake regulator family VPUCM_2834 PF00342 Phosphoglucose isomerase VPUCM_2835 PF01894 Uncharacterised protein family UPF0047 VPUCM_2837 PF01168 Alanine racemase, N-terminal domain VPUCM_2837 PF00842 Alanine racemase, C-terminal domain VPUCM_2838 PF00772 DnaB-like helicase N terminal domain VPUCM_2838 PF03796 DnaB-like helicase C terminal domain VPUCM_2840 PF03948 Ribosomal protein L9, C-terminal domain VPUCM_2840 PF01281 Ribosomal protein L9, N-terminal domain VPUCM_2841 PF01084 Ribosomal protein S18 VPUCM_2842 PF00436 Single-strand binding protein family VPUCM_2843 PF01250 Ribosomal protein S6 VPUCM_2844 PF00834 Ribulose-phosphate 3 epimerase family VPUCM_2845 PF02086 D12 class N6 adenine-specific DNA methyltransferase VPUCM_2847 PF01761 3-dehydroquinate synthase VPUCM_2848 PF01202 Shikimate kinase VPUCM_2849 PF00263 Bacterial type II and III secretion system protein VPUCM_2849 PF07660 Secretin and TonB N terminus short domain VPUCM_2849 PF11741 AMIN domain VPUCM_2849 PF03958 Bacterial type II/III secretion system short domain VPUCM_2854 PF00912 Transglycosylase VPUCM_2854 PF00905 Penicillin binding protein transpeptidase domain VPUCM_2854 PF17092 Penicillin-binding protein OB-like domain VPUCM_2855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_2855 PF03466 LysR substrate binding domain VPUCM_2856 PF08534 Redoxin VPUCM_2856 PF00462 Glutaredoxin VPUCM_2858 PF14698 Argininosuccinate lyase C-terminal VPUCM_2858 PF00583 Acetyltransferase (GNAT) family VPUCM_2858 PF00206 Lyase VPUCM_2859 PF00764 Arginosuccinate synthase VPUCM_2860 PF00696 Amino acid kinase family VPUCM_2861 PF02774 Semialdehyde dehydrogenase, dimerisation domain VPUCM_2861 PF01118 Semialdehyde dehydrogenase, NAD binding domain VPUCM_2862 PF07687 Peptidase dimerisation domain VPUCM_2862 PF01546 Peptidase family M20/M25/M40 VPUCM_2863 PF00311 Phosphoenolpyruvate carboxylase VPUCM_2865 PF02219 Methylenetetrahydrofolate reductase VPUCM_2866 PF00696 Amino acid kinase family VPUCM_2866 PF03447 Homoserine dehydrogenase, NAD binding domain VPUCM_2866 PF00742 Homoserine dehydrogenase VPUCM_2867 PF01053 Cys/Met metabolism PLP-dependent enzyme VPUCM_2868 PF01340 Met Apo-repressor, MetJ VPUCM_2869 PF03949 Malic enzyme, NAD binding domain VPUCM_2869 PF00390 Malic enzyme, N-terminal domain VPUCM_2870 PF00210 Ferritin-like domain VPUCM_2871 PF03143 Elongation factor Tu C-terminal domain VPUCM_2871 PF03144 Elongation factor Tu domain 2 VPUCM_2871 PF00009 Elongation factor Tu GTP binding domain VPUCM_2872 PF03764 Elongation factor G, domain IV VPUCM_2872 PF14492 Elongation Factor G, domain II VPUCM_2872 PF00009 Elongation factor Tu GTP binding domain VPUCM_2872 PF03144 Elongation factor Tu domain 2 VPUCM_2872 PF00679 Elongation factor G C-terminus VPUCM_2873 PF00177 Ribosomal protein S7p/S5e VPUCM_2874 PF00164 Ribosomal protein S12/S23 VPUCM_2875 PF04077 DsrH like protein VPUCM_2876 PF02635 DsrE/DsrF-like family VPUCM_2877 PF02635 DsrE/DsrF-like family VPUCM_2878 PF08348 YheO-like PAS domain VPUCM_2878 PF13309 HTH domain VPUCM_2879 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VPUCM_2879 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VPUCM_2881 PF04102 SlyX VPUCM_2882 PF01112 Asparaginase VPUCM_2883 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VPUCM_2885 PF00999 Sodium/hydrogen exchanger family VPUCM_2885 PF02254 TrkA-N domain VPUCM_2886 PF02525 Flavodoxin-like fold VPUCM_2887 PF00005 ABC transporter VPUCM_2887 PF12848 ABC transporter VPUCM_2889 PF00561 alpha/beta hydrolase fold VPUCM_2890 PF06794 Uncharacterised protein family (UPF0270) VPUCM_2891 PF00485 Phosphoribulokinase / Uridine kinase family VPUCM_2892 PF13545 Crp-like helix-turn-helix domain VPUCM_2892 PF00027 Cyclic nucleotide-binding domain VPUCM_2894 PF00171 Aldehyde dehydrogenase family VPUCM_2895 PF04958 Arginine N-succinyltransferase beta subunit VPUCM_2896 PF00202 Aminotransferase class-III VPUCM_2898 PF00117 Glutamine amidotransferase class-I VPUCM_2901 PF00579 tRNA synthetases class I (W and Y) VPUCM_2902 PF13419 Haloacid dehalogenase-like hydrolase VPUCM_2903 PF00588 SpoU rRNA Methylase family VPUCM_2903 PF08032 RNA 2'-O ribose methyltransferase substrate binding VPUCM_2904 PF08206 Ribonuclease B OB domain VPUCM_2904 PF08461 Ribonuclease R winged-helix domain VPUCM_2904 PF00773 RNB domain VPUCM_2904 PF00575 S1 RNA binding domain VPUCM_2904 PF17876 Cold shock domain VPUCM_2905 PF02082 Transcriptional regulator VPUCM_2906 PF00175 Oxidoreductase NAD-binding domain VPUCM_2906 PF00970 Oxidoreductase FAD-binding domain VPUCM_2906 PF00042 Globin VPUCM_2907 PF08238 Sel1 repeat VPUCM_2908 PF00709 Adenylosuccinate synthetase VPUCM_2909 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) VPUCM_2910 PF01145 SPFH domain / Band 7 family VPUCM_2911 PF12221 Bacterial membrane protein N terminal VPUCM_2911 PF01145 SPFH domain / Band 7 family VPUCM_2912 PF13167 GTP-binding GTPase N-terminal VPUCM_2912 PF16360 GTP-binding GTPase Middle Region VPUCM_2912 PF01926 50S ribosome-binding GTPase VPUCM_2913 PF17209 Hfq protein VPUCM_2915 PF01119 DNA mismatch repair protein, C-terminal domain VPUCM_2915 PF08676 MutL C terminal dimerisation domain VPUCM_2916 PF01520 N-acetylmuramoyl-L-alanine amidase VPUCM_2917 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE VPUCM_2918 PF08331 Domain of unknown function (DUF1730) VPUCM_2919 PF00929 Exonuclease VPUCM_2920 PF03193 RsgA GTPase VPUCM_2921 PF02666 Phosphatidylserine decarboxylase VPUCM_2922 PF00939 Sodium:sulfate symporter transmembrane region VPUCM_2924 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPUCM_2924 PF00672 HAMP domain VPUCM_2926 PF06415 BPG-independent PGAM N-terminus (iPGM_N) VPUCM_2926 PF01676 Metalloenzyme superfamily VPUCM_2928 PF00581 Rhodanese-like domain VPUCM_2929 PF02556 Preprotein translocase subunit SecB VPUCM_2930 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VPUCM_2930 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VPUCM_2931 PF00132 Bacterial transferase hexapeptide (six repeats) VPUCM_2931 PF06426 Serine acetyltransferase, N-terminal VPUCM_2932 PF01551 Peptidase family M23 VPUCM_2934 PF08360 QacR-like protein, C-terminal region VPUCM_2934 PF00440 Bacterial regulatory proteins, tetR family VPUCM_2936 PF00152 tRNA synthetases class II (D, K and N) VPUCM_2938 PF00890 FAD binding domain VPUCM_2938 PF02910 Fumarate reductase flavoprotein C-term VPUCM_2939 PF13085 2Fe-2S iron-sulfur cluster binding domain VPUCM_2939 PF13183 4Fe-4S dicluster domain VPUCM_2940 PF02300 Fumarate reductase subunit C VPUCM_2941 PF02313 Fumarate reductase subunit D VPUCM_2943 PF01132 Elongation factor P (EF-P) OB domain VPUCM_2943 PF09285 Elongation factor P, C-terminal VPUCM_2943 PF08207 Elongation factor P (EF-P) KOW-like domain VPUCM_2944 PF04055 Radical SAM superfamily VPUCM_2947 PF01168 Alanine racemase, N-terminal domain VPUCM_2947 PF00842 Alanine racemase, C-terminal domain VPUCM_2948 PF02308 MgtC family VPUCM_2950 PF00118 TCP-1/cpn60 chaperonin family VPUCM_2951 PF00166 Chaperonin 10 Kd subunit VPUCM_2952 PF01554 MatE VPUCM_2953 PF00365 Phosphofructokinase VPUCM_2954 PF16916 Dimerisation domain of Zinc Transporter VPUCM_2954 PF01545 Cation efflux family VPUCM_2955 PF07813 LTXXQ motif family protein VPUCM_2956 PF00486 Transcriptional regulatory protein, C terminal VPUCM_2956 PF00072 Response regulator receiver domain VPUCM_2957 PF00512 His Kinase A (phospho-acceptor) domain VPUCM_2957 PF00672 HAMP domain VPUCM_2957 PF16527 Two-component sensor protein CpxA, periplasmic domain VPUCM_2957 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_2958 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VPUCM_2958 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VPUCM_2959 PF00588 SpoU rRNA Methylase family VPUCM_2960 PF04186 FxsA cytoplasmic membrane protein VPUCM_2961 PF00206 Lyase VPUCM_2961 PF10415 Fumarase C C-terminus VPUCM_2962 PF03605 Anaerobic c4-dicarboxylate membrane transporter VPUCM_2963 PF02683 Cytochrome C biogenesis protein transmembrane region VPUCM_2963 PF11412 Disulphide bond corrector protein DsbC VPUCM_2964 PF00072 Response regulator receiver domain VPUCM_2964 PF00196 Bacterial regulatory proteins, luxR family VPUCM_2965 PF03471 Transporter associated domain VPUCM_2965 PF00999 Sodium/hydrogen exchanger family VPUCM_2965 PF02080 TrkA-C domain VPUCM_2968 PF00474 Sodium:solute symporter family VPUCM_2971 PF00206 Lyase VPUCM_2971 PF10415 Fumarase C C-terminus VPUCM_2972 PF00512 His Kinase A (phospho-acceptor) domain VPUCM_2972 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPUCM_2972 PF09308 LuxQ, periplasmic VPUCM_2972 PF00072 Response regulator receiver domain VPUCM_2973 PF12832 MFS_1 like family VPUCM_2976 PF13193 AMP-binding enzyme C-terminal domain VPUCM_2976 PF16177 Acetyl-coenzyme A synthetase N-terminus VPUCM_2976 PF00501 AMP-binding enzyme VPUCM_2977 PF01220 Dehydroquinase class II VPUCM_2978 PF00364 Biotin-requiring enzyme VPUCM_2979 PF00289 Biotin carboxylase, N-terminal domain VPUCM_2979 PF02785 Biotin carboxylase C-terminal domain VPUCM_2979 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VPUCM_2981 PF01207 Dihydrouridine synthase (Dus) VPUCM_2982 PF02954 Bacterial regulatory protein, Fis family VPUCM_2983 PF07690 Major Facilitator Superfamily VPUCM_2984 PF12848 ABC transporter VPUCM_2984 PF00005 ABC transporter VPUCM_2985 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_2985 PF05230 MASE2 domain VPUCM_2987 PF01276 Orn/Lys/Arg decarboxylase, major domain VPUCM_2987 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VPUCM_2987 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VPUCM_2988 PF13520 Amino acid permease VPUCM_2989 PF00486 Transcriptional regulatory protein, C terminal VPUCM_2989 PF18500 CadC C-terminal domain 1 VPUCM_2991 PF13411 MerR HTH family regulatory protein VPUCM_2993 PF01808 AICARFT/IMPCHase bienzyme VPUCM_2993 PF02142 MGS-like domain VPUCM_2994 PF02843 Phosphoribosylglycinamide synthetase, C domain VPUCM_2994 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VPUCM_2994 PF02844 Phosphoribosylglycinamide synthetase, N domain VPUCM_2996 PF00216 Bacterial DNA-binding protein VPUCM_2997 PF01595 Cyclin M transmembrane N-terminal domain VPUCM_2997 PF00571 CBS domain VPUCM_2998 PF04222 Protein of unknown function (DUF416) VPUCM_2999 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VPUCM_3000 PF03167 Uracil DNA glycosylase superfamily VPUCM_3001 PF01208 Uroporphyrinogen decarboxylase (URO-D) VPUCM_3004 PF09297 NADH pyrophosphatase zinc ribbon domain VPUCM_3004 PF00293 NUDIX domain VPUCM_3005 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ VPUCM_3006 PF04983 RNA polymerase Rpb1, domain 3 VPUCM_3006 PF05000 RNA polymerase Rpb1, domain 4 VPUCM_3006 PF04998 RNA polymerase Rpb1, domain 5 VPUCM_3006 PF04997 RNA polymerase Rpb1, domain 1 VPUCM_3006 PF00623 RNA polymerase Rpb1, domain 2 VPUCM_3007 PF00562 RNA polymerase Rpb2, domain 6 VPUCM_3007 PF04563 RNA polymerase beta subunit VPUCM_3007 PF04561 RNA polymerase Rpb2, domain 2 VPUCM_3007 PF04565 RNA polymerase Rpb2, domain 3 VPUCM_3007 PF04560 RNA polymerase Rpb2, domain 7 VPUCM_3007 PF10385 RNA polymerase beta subunit external 1 domain VPUCM_3008 PF00542 Ribosomal protein L7/L12 C-terminal domain VPUCM_3008 PF16320 Ribosomal protein L7/L12 dimerisation domain VPUCM_3009 PF00466 Ribosomal protein L10 VPUCM_3010 PF00687 Ribosomal protein L1p/L10e family VPUCM_3011 PF00298 Ribosomal protein L11, RNA binding domain VPUCM_3011 PF03946 Ribosomal protein L11, N-terminal domain VPUCM_3012 PF00467 KOW motif VPUCM_3012 PF02357 Transcription termination factor nusG VPUCM_3013 PF00584 SecE/Sec61-gamma subunits of protein translocation complex VPUCM_3014 PF03144 Elongation factor Tu domain 2 VPUCM_3014 PF00009 Elongation factor Tu GTP binding domain VPUCM_3014 PF03143 Elongation factor Tu C-terminal domain VPUCM_3015 PF00485 Phosphoribulokinase / Uridine kinase family VPUCM_3016 PF08279 HTH domain VPUCM_3016 PF03099 Biotin/lipoate A/B protein ligase family VPUCM_3016 PF02237 Biotin protein ligase C terminal domain VPUCM_3017 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VPUCM_3017 PF01565 FAD binding domain VPUCM_3019 PF13091 PLD-like domain VPUCM_3022 PF01177 Asp/Glu/Hydantoin racemase VPUCM_3024 PF07715 TonB-dependent Receptor Plug Domain VPUCM_3024 PF00593 TonB dependent receptor VPUCM_3025 PF05958 tRNA (Uracil-5-)-methyltransferase VPUCM_3027 PF00440 Bacterial regulatory proteins, tetR family VPUCM_3028 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VPUCM_3028 PF07992 Pyridine nucleotide-disulphide oxidoreductase VPUCM_3029 PF01554 MatE VPUCM_3030 PF04072 Leucine carboxyl methyltransferase VPUCM_3031 PF01726 LexA DNA binding domain VPUCM_3031 PF00717 Peptidase S24-like VPUCM_3032 PF01553 Acyltransferase VPUCM_3033 PF01040 UbiA prenyltransferase family VPUCM_3034 PF04345 Chorismate lyase VPUCM_3035 PF03748 Flagellar basal body-associated protein FliL VPUCM_3036 PF01694 Rhomboid family VPUCM_3036 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease VPUCM_3037 PF00581 Rhodanese-like domain VPUCM_3038 PF04545 Sigma-70, region 4 VPUCM_3038 PF00140 Sigma-70 factor, region 1.2 VPUCM_3038 PF04542 Sigma-70 region 2 VPUCM_3039 PF18075 FtsX extracellular domain VPUCM_3040 PF00005 ABC transporter VPUCM_3041 PF02881 SRP54-type protein, helical bundle domain VPUCM_3041 PF00448 SRP54-type protein, GTPase domain VPUCM_3044 PF01914 MarC family integral membrane protein VPUCM_3054 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VPUCM_3054 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VPUCM_3055 PF01022 Bacterial regulatory protein, arsR family VPUCM_3056 PF08668 HDOD domain VPUCM_3056 PF00563 EAL domain VPUCM_3057 PF01810 LysE type translocator VPUCM_3058 PF12146 Serine aminopeptidase, S33 VPUCM_3063 PF10442 FIST C domain VPUCM_3063 PF00990 Diguanylate cyclase, GGDEF domain VPUCM_3063 PF00563 EAL domain VPUCM_3063 PF08495 FIST N domain VPUCM_3064 PF13419 Haloacid dehalogenase-like hydrolase VPUCM_3065 PF00589 Phage integrase family VPUCM_3065 PF02899 Phage integrase, N-terminal SAM-like domain VPUCM_3067 PF01678 Diaminopimelate epimerase VPUCM_3068 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VPUCM_3068 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VPUCM_3070 PF01491 Frataxin-like domain VPUCM_3071 PF01295 Adenylate cyclase, class-I VPUCM_3071 PF12633 Adenylate cyclase NT domain VPUCM_3072 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain VPUCM_3072 PF03900 Porphobilinogen deaminase, C-terminal domain VPUCM_3073 PF02602 Uroporphyrinogen-III synthase HemD VPUCM_3074 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase VPUCM_3075 PF07219 HemY protein N-terminus VPUCM_3077 PF00175 Oxidoreductase NAD-binding domain VPUCM_3078 PF00111 2Fe-2S iron-sulfur cluster binding domain VPUCM_3079 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VPUCM_3081 PF07497 Rho termination factor, RNA-binding domain VPUCM_3081 PF07498 Rho termination factor, N-terminal domain VPUCM_3081 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VPUCM_3082 PF00085 Thioredoxin VPUCM_3083 PF00271 Helicase conserved C-terminal domain VPUCM_3083 PF00270 DEAD/DEAH box helicase VPUCM_3084 PF02541 Ppx/GppA phosphatase family VPUCM_3085 PF02592 Putative vitamin uptake transporter VPUCM_3087 PF09382 RQC domain VPUCM_3087 PF00570 HRDC domain VPUCM_3087 PF00271 Helicase conserved C-terminal domain VPUCM_3087 PF00270 DEAD/DEAH box helicase VPUCM_3087 PF16124 RecQ zinc-binding VPUCM_3088 PF00892 EamA-like transporter family VPUCM_3090 PF01810 LysE type translocator VPUCM_3092 PF13361 UvrD-like helicase C-terminal domain VPUCM_3092 PF00580 UvrD/REP helicase N-terminal domain VPUCM_3094 PF05114 Protein of unknown function (DUF692) VPUCM_3098 PF07690 Major Facilitator Superfamily VPUCM_3099 PF03466 LysR substrate binding domain VPUCM_3099 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_3100 PF00557 Metallopeptidase family M24 VPUCM_3100 PF00557 Metallopeptidase family M24 VPUCM_3100 PF01321 Creatinase/Prolidase N-terminal domain VPUCM_3100 PF01321 Creatinase/Prolidase N-terminal domain VPUCM_3101 PF04055 Radical SAM superfamily VPUCM_3101 PF06968 Biotin and Thiamin Synthesis associated domain VPUCM_3102 PF05690 Thiazole biosynthesis protein ThiG VPUCM_3103 PF02597 ThiS family VPUCM_3104 PF00899 ThiF family VPUCM_3105 PF02581 Thiamine monophosphate synthase VPUCM_3106 PF01964 Radical SAM ThiC family VPUCM_3106 PF13667 ThiC-associated domain VPUCM_3107 PF02537 CrcB-like protein, Camphor Resistance (CrcB) VPUCM_3111 PF00132 Bacterial transferase hexapeptide (six repeats) VPUCM_3112 PF07369 Protein of unknown function (DUF1488) VPUCM_3113 PF18317 Shikimate 5'-dehydrogenase C-terminal domain VPUCM_3113 PF01488 Shikimate / quinate 5-dehydrogenase VPUCM_3113 PF08501 Shikimate dehydrogenase substrate binding domain VPUCM_3114 PF01218 Coproporphyrinogen III oxidase VPUCM_3115 PF01300 Telomere recombination VPUCM_3116 PF00731 AIR carboxylase VPUCM_3117 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain VPUCM_3117 PF02222 ATP-grasp domain VPUCM_3118 PF01396 Topoisomerase DNA binding C4 zinc finger VPUCM_3120 PF04361 Protein of unknown function (DUF494) VPUCM_3121 PF17782 DprA winged helix domain VPUCM_3121 PF02481 DNA recombination-mediator protein A VPUCM_3123 PF01327 Polypeptide deformylase VPUCM_3124 PF02911 Formyl transferase, C-terminal domain VPUCM_3124 PF00551 Formyl transferase VPUCM_3125 PF01029 NusB family VPUCM_3125 PF01189 16S rRNA methyltransferase RsmB/F VPUCM_3126 PF02254 TrkA-N domain VPUCM_3126 PF02080 TrkA-C domain VPUCM_3127 PF02386 Cation transport protein VPUCM_3129 PF03006 Haemolysin-III related VPUCM_3130 PF07070 SpoOM protein VPUCM_3133 PF06288 Protein of unknown function (DUF1040) VPUCM_3134 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase VPUCM_3134 PF13746 4Fe-4S dicluster domain VPUCM_3134 PF12801 4Fe-4S binding domain VPUCM_3135 PF01636 Phosphotransferase enzyme family VPUCM_3136 PF01323 DSBA-like thioredoxin domain VPUCM_3137 PF01553 Acyltransferase VPUCM_3139 PF13335 Magnesium chelatase, subunit ChlI C-terminal VPUCM_3139 PF01078 Magnesium chelatase, subunit ChlI VPUCM_3140 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VPUCM_3140 PF00205 Thiamine pyrophosphate enzyme, central domain VPUCM_3140 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VPUCM_3142 PF01063 Amino-transferase class IV VPUCM_3143 PF00920 Dehydratase family VPUCM_3144 PF00585 C-terminal regulatory domain of Threonine dehydratase VPUCM_3144 PF00291 Pyridoxal-phosphate dependent enzyme VPUCM_3145 PF03466 LysR substrate binding domain VPUCM_3145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPUCM_3146 PF07690 Major Facilitator Superfamily VPUCM_3147 PF00497 Bacterial extracellular solute-binding proteins, family 3 VPUCM_3148 PF00528 Binding-protein-dependent transport system inner membrane component VPUCM_3149 PF00132 Bacterial transferase hexapeptide (six repeats) VPUCM_3149 PF12804 MobA-like NTP transferase domain VPUCM_3150 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VPUCM_3150 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VPUCM_3151 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VPUCM_3151 PF02874 ATP synthase alpha/beta family, beta-barrel domain VPUCM_3152 PF00231 ATP synthase VPUCM_3153 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VPUCM_3153 PF00306 ATP synthase alpha/beta chain, C terminal domain VPUCM_3153 PF02874 ATP synthase alpha/beta family, beta-barrel domain VPUCM_3154 PF00213 ATP synthase delta (OSCP) subunit VPUCM_3155 PF00430 ATP synthase B/B' CF(0) VPUCM_3156 PF00137 ATP synthase subunit C VPUCM_3157 PF00119 ATP synthase A chain VPUCM_3158 PF03899 ATP synthase I chain VPUCM_3159 PF17762 HTH domain found in ParB protein VPUCM_3159 PF02195 ParB-like nuclease domain VPUCM_3160 PF13614 AAA domain VPUCM_3161 PF02527 rRNA small subunit methyltransferase G VPUCM_3162 PF13932 GidA associated domain VPUCM_3162 PF01134 Glucose inhibited division protein A VPUCM_p0013 PF00717 Peptidase S24-like VPUCM_p0014 PF11799 impB/mucB/samB family C-terminal domain VPUCM_p0014 PF00817 impB/mucB/samB family VPUCM_p0014 PF13438 Domain of unknown function (DUF4113) VPUCM_p0038 PF02899 Phage integrase, N-terminal SAM-like domain VPUCM_p0038 PF00589 Phage integrase family VPUCM_p0052 PF13614 AAA domain VPUCM_p0053 PF02195 ParB-like nuclease domain VPUCM_p0053 PF17762 HTH domain found in ParB protein VPUCM_p0057 PF01751 Toprim domain VPUCM_p0057 PF01131 DNA topoisomerase VPUCM_p0106 PF00437 Type II/IV secretion system protein