VPUCM_0006 SM00382 ATPases associated with a variety of cellular activities VPUCM_0008 SM00062 Bacterial periplasmic substrate-binding proteins VPUCM_0008 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. VPUCM_0009 SM00382 ATPases associated with a variety of cellular activities VPUCM_0009 SM00760 Bacterial dnaA protein helix-turn-helix domain VPUCM_0010 SM00480 DNA polymerase III beta subunit VPUCM_0012 SM00387 Histidine kinase-like ATPases VPUCM_0012 SM00433 TopoisomeraseII VPUCM_0018 SM00642 Alpha-amylase domain VPUCM_0027 SM00829 Enoylreductase VPUCM_0045 SM00382 ATPases associated with a variety of cellular activities VPUCM_0054 SM00220 Serine/Threonine protein kinases, catalytic domain VPUCM_0055 SM00354 helix_turn _helix lactose operon repressor VPUCM_0068 SM00344 helix_turn_helix ASNC type VPUCM_0076 SM00382 ATPases associated with a variety of cellular activities VPUCM_0077 SM00749 bacterial OsmY and nodulation domain VPUCM_0081 SM00046 Diacylglycerol kinase catalytic domain (presumed) VPUCM_0081 SM00195 Dual specificity phosphatase, catalytic domain VPUCM_0081 SM00404 Protein tyrosine phosphatase, catalytic domain motif VPUCM_0088 SM00052 Putative diguanylate phosphodiesterase VPUCM_0088 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VPUCM_0088 SM00091 PAS domain VPUCM_0088 SM00267 diguanylate cyclase VPUCM_0099 SM01004 Delta-aminolevulinic acid dehydratase VPUCM_0101 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs VPUCM_0101 SM00474 3'-5' exonuclease VPUCM_0101 SM00475 5'-3' exonuclease VPUCM_0101 SM00482 DNA polymerase A domain VPUCM_0109 SM00729 Elongator protein 3, MiaB family, Radical SAM VPUCM_0111 SM00052 Putative diguanylate phosphodiesterase VPUCM_0111 SM00267 diguanylate cyclase VPUCM_0111 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VPUCM_0112 SM00382 ATPases associated with a variety of cellular activities VPUCM_0112 SM00448 cheY-homologous receiver domain VPUCM_0113 SM00387 Histidine kinase-like ATPases VPUCM_0113 SM00388 His Kinase A (phosphoacceptor) domain VPUCM_0115 SM01230 VPUCM_0115 VPUCM_0129 SM00382 ATPases associated with a variety of cellular activities VPUCM_0145 SM00316 Ribosomal protein S1-like RNA-binding domain VPUCM_0145 SM00732 Likely ribonuclease with RNase H fold. VPUCM_0149 SM00448 cheY-homologous receiver domain VPUCM_0149 SM00862 Transcriptional regulatory protein, C terminal VPUCM_0150 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VPUCM_0150 SM00387 Histidine kinase-like ATPases VPUCM_0150 SM00388 His Kinase A (phosphoacceptor) domain VPUCM_0153 SM00487 DEAD-like helicases superfamily VPUCM_0153 SM00490 helicase superfamily c-terminal domain VPUCM_0155 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VPUCM_0155 SM00954 Region found in RelA / SpoT proteins VPUCM_0156 SM01409 VPUCM_0156 VPUCM_0157 SM00072 Guanylate kinase homologues. VPUCM_0158 SM00028 Tetratricopeptide repeats VPUCM_0168 SM00382 ATPases associated with a variety of cellular activities VPUCM_0169 SM00382 ATPases associated with a variety of cellular activities VPUCM_0184 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VPUCM_0184 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VPUCM_0184 SM01049 VPUCM_0184 VPUCM_0189 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain VPUCM_0189 SM01232 VPUCM_0189 VPUCM_0205 SM00116 Domain in cystathionine beta-synthase and other proteins. VPUCM_0223 SM00382 ATPases associated with a variety of cellular activities VPUCM_0238 SM00382 ATPases associated with a variety of cellular activities VPUCM_0246 SM00028 Tetratricopeptide repeats VPUCM_0262 SM00984 UDP binding domain VPUCM_0275 SM00382 ATPases associated with a variety of cellular activities VPUCM_0275 SM01086 C-terminal, D2-small domain, of ClpB protein VPUCM_0278 SM00354 helix_turn _helix lactose operon repressor VPUCM_0279 SM00487 DEAD-like helicases superfamily VPUCM_0279 SM00490 helicase superfamily c-terminal domain VPUCM_0281 SM01403 VPUCM_0281 VPUCM_0285 SM01382 VPUCM_0285 VPUCM_0285 SM01383 VPUCM_0285 VPUCM_0288 SM00322 K homology RNA-binding domain VPUCM_0292 SM01374 VPUCM_0292 VPUCM_0293 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. VPUCM_0306 SM00363 S4 RNA-binding domain VPUCM_0306 SM01390 VPUCM_0306 VPUCM_0307 SM00662 RNA polymerases D VPUCM_0314 SM00487 DEAD-like helicases superfamily VPUCM_0314 SM00490 helicase superfamily c-terminal domain VPUCM_0325 SM00382 ATPases associated with a variety of cellular activities VPUCM_0341 SM00382 ATPases associated with a variety of cellular activities VPUCM_0358 SM00650 Ribosomal RNA adenine dimethylases VPUCM_0362 SM00271 DnaJ molecular chaperone homology domain VPUCM_0366 SM01329 VPUCM_0366 VPUCM_0367 SM00917 LeuA allosteric (dimerisation) domain VPUCM_0369 SM00014 Acid phosphatase homologues VPUCM_0375 SM00267 diguanylate cyclase VPUCM_0376 SM00345 helix_turn_helix gluconate operon transcriptional repressor VPUCM_0378 SM00420 helix_turn_helix, Deoxyribose operon repressor VPUCM_0378 SM01134 VPUCM_0378 VPUCM_0381 SM00448 cheY-homologous receiver domain VPUCM_0381 SM00862 Transcriptional regulatory protein, C terminal VPUCM_0382 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VPUCM_0382 SM00387 Histidine kinase-like ATPases VPUCM_0382 SM00388 His Kinase A (phosphoacceptor) domain VPUCM_0385 SM01120 VPUCM_0385 VPUCM_0392 SM00563 Phosphate acyltransferases VPUCM_0399 SM00400 zinc finger VPUCM_0399 SM00493 VPUCM_0399 VPUCM_0399 SM00766 DNA primase DnaG DnaB-binding VPUCM_0404 SM01207 VPUCM_0404 VPUCM_0405 SM00905 Dihydroneopterin aldolase VPUCM_0409 SM00382 ATPases associated with a variety of cellular activities VPUCM_0411 SM00287 Bacterial SH3 domain homologues VPUCM_0414 SM00880 VPUCM_0414 VPUCM_0414 SM01118 VPUCM_0414 VPUCM_0416 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VPUCM_0425 SM00387 Histidine kinase-like ATPases VPUCM_0425 SM00433 TopoisomeraseII VPUCM_0426 SM00434 DNA Topoisomerase IV VPUCM_0427 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VPUCM_0428 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VPUCM_0438 SM00749 bacterial OsmY and nodulation domain VPUCM_0454 SM00842 Cell division protein FtsA VPUCM_0455 SM00864 Tubulin/FtsZ family, GTPase domain VPUCM_0455 SM00865 Tubulin/FtsZ family, C-terminal domain VPUCM_0458 SM00957 SecA DEAD-like domain VPUCM_0458 SM00958 SecA preprotein cross-linking domain VPUCM_0461 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain VPUCM_0462 SM00851 MGS-like domain VPUCM_0462 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VPUCM_0477 SM00729 Elongator protein 3, MiaB family, Radical SAM VPUCM_0478 SM00091 PAS domain VPUCM_0478 SM00267 diguanylate cyclase VPUCM_0479 SM00073 Histidine Phosphotransfer domain VPUCM_0479 SM00091 PAS domain VPUCM_0479 SM00387 Histidine kinase-like ATPases VPUCM_0479 SM00388 His Kinase A (phosphoacceptor) domain VPUCM_0479 SM00448 cheY-homologous receiver domain VPUCM_0481 SM00448 cheY-homologous receiver domain VPUCM_0481 SM00862 Transcriptional regulatory protein, C terminal VPUCM_0489 SM00518 AP endonuclease family 2 VPUCM_0491 SM00986 Uracil DNA glycosylase superfamily VPUCM_0491 SM00987 UreE urease accessory protein, C-terminal domain VPUCM_0496 SM00487 DEAD-like helicases superfamily VPUCM_0496 SM00490 helicase superfamily c-terminal domain VPUCM_0503 SM00937 VPUCM_0503 VPUCM_0505 SM00382 ATPases associated with a variety of cellular activities VPUCM_0509 SM00927 DNA mismatch repair enzyme MutH VPUCM_0511 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VPUCM_0515 SM01154 VPUCM_0515 VPUCM_0518 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VPUCM_0521 SM00904 Riboflavin kinase VPUCM_0526 SM00448 cheY-homologous receiver domain VPUCM_0526 SM00850 LytTr DNA-binding domain VPUCM_0535 SM00830 Chorismate mutase type II VPUCM_0538 SM00382 ATPases associated with a variety of cellular activities VPUCM_0542 SM00830 Chorismate mutase type II VPUCM_0544 SM00062 Bacterial periplasmic substrate-binding proteins VPUCM_0546 SM00363 S4 RNA-binding domain VPUCM_0548 SM00382 ATPases associated with a variety of cellular activities VPUCM_0548 SM01086 C-terminal, D2-small domain, of ClpB protein VPUCM_0556 SM00448 cheY-homologous receiver domain VPUCM_0556 SM00862 Transcriptional regulatory protein, C terminal VPUCM_0557 SM00091 PAS domain VPUCM_0557 SM00387 Histidine kinase-like ATPases VPUCM_0557 SM00388 His Kinase A (phosphoacceptor) domain VPUCM_0563 SM00382 ATPases associated with a variety of cellular activities VPUCM_0571 SM00116 Domain in cystathionine beta-synthase and other proteins. VPUCM_0572 SM00020 Trypsin-like serine protease VPUCM_0575 SM01323 VPUCM_0575 VPUCM_0584 SM00271 DnaJ molecular chaperone homology domain VPUCM_0589 SM00562 VPUCM_0589 VPUCM_0591 SM00530 Helix-turn-helix XRE-family like proteins VPUCM_0595 SM00564 beta-propeller repeat VPUCM_0596 SM00382 ATPases associated with a variety of cellular activities VPUCM_0600 SM00116 Domain in cystathionine beta-synthase and other proteins. VPUCM_0600 SM01240 VPUCM_0600 VPUCM_0603 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VPUCM_0613 SM00487 DEAD-like helicases superfamily VPUCM_0613 SM00490 helicase superfamily c-terminal domain VPUCM_0620 SM00495 Chitin-binding domain type 3 VPUCM_0659 SM00271 DnaJ molecular chaperone homology domain VPUCM_0672 SM01103 VPUCM_0672 VPUCM_0674 SM00382 ATPases associated with a variety of cellular activities VPUCM_0679 SM00316 Ribosomal protein S1-like RNA-binding domain VPUCM_0683 SM01387 VPUCM_0683 VPUCM_0684 SM00316 Ribosomal protein S1-like RNA-binding domain VPUCM_0684 SM00322 K homology RNA-binding domain VPUCM_0685 SM00028 Tetratricopeptide repeats VPUCM_0686 SM00347 helix_turn_helix multiple antibiotic resistance protein VPUCM_0690 SM00052 Putative diguanylate phosphodiesterase VPUCM_0690 SM00091 PAS domain VPUCM_0690 SM00267 diguanylate cyclase VPUCM_0714 SM00382 ATPases associated with a variety of cellular activities VPUCM_0714 SM01086 C-terminal, D2-small domain, of ClpB protein VPUCM_0715 SM00052 Putative diguanylate phosphodiesterase VPUCM_0715 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VPUCM_0715 SM00091 PAS domain VPUCM_0715 SM00267 diguanylate cyclase VPUCM_0718 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VPUCM_0720 SM00479 VPUCM_0720 VPUCM_0724 SM00487 DEAD-like helicases superfamily VPUCM_0728 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VPUCM_0733 SM00530 Helix-turn-helix XRE-family like proteins VPUCM_0750 SM00954 Region found in RelA / SpoT proteins VPUCM_0758 SM00382 ATPases associated with a variety of cellular activities VPUCM_0762 SM00327 von Willebrand factor (vWF) type A domain VPUCM_0765 SM00778 Zinc-binding domain of primase-helicase VPUCM_0770 SM00382 ATPases associated with a variety of cellular activities VPUCM_0770 SM00448 cheY-homologous receiver domain VPUCM_0781 SM00382 ATPases associated with a variety of cellular activities VPUCM_0781 SM01086 C-terminal, D2-small domain, of ClpB protein VPUCM_0782 SM00271 DnaJ molecular chaperone homology domain VPUCM_0789 SM00267 diguanylate cyclase VPUCM_0802 SM00530 Helix-turn-helix XRE-family like proteins VPUCM_0807 SM01133 VPUCM_0807 VPUCM_0808 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain VPUCM_0814 SM00382 ATPases associated with a variety of cellular activities VPUCM_0815 SM00838 Elongation factor G C-terminus VPUCM_0815 SM00889 Elongation factor G, domain IV VPUCM_0819 SM00342 helix_turn_helix, arabinose operon control protein VPUCM_0821 SM00382 ATPases associated with a variety of cellular activities VPUCM_0822 SM00858 VPUCM_0822 VPUCM_0832 SM00028 Tetratricopeptide repeats VPUCM_0838 SM01038 Beta galactosidase small chain VPUCM_0839 SM00354 helix_turn _helix lactose operon repressor VPUCM_0845 SM00116 Domain in cystathionine beta-synthase and other proteins. VPUCM_0846 SM00479 VPUCM_0846 VPUCM_0847 SM00354 helix_turn _helix lactose operon repressor VPUCM_0853 SM00420 helix_turn_helix, Deoxyribose operon repressor VPUCM_0853 SM01134 VPUCM_0853 VPUCM_0870 SM00925 MltA specific insert domain VPUCM_0873 SM00267 diguanylate cyclase VPUCM_0878 SM00464 Found in ATP-dependent protease La (LON) VPUCM_0889 SM00900 VPUCM_0889 VPUCM_0897 SM00487 DEAD-like helicases superfamily VPUCM_0897 SM00490 helicase superfamily c-terminal domain VPUCM_0900 SM00495 Chitin-binding domain type 3 VPUCM_0900 SM00636 VPUCM_0900 VPUCM_0917 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VPUCM_0926 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VPUCM_0928 SM00935 Outer membrane protein (OmpH-like) VPUCM_0934 SM00481 DNA polymerase alpha chain like domain VPUCM_0936 SM00977 TilS substrate C-terminal domain VPUCM_0938 SM00938 Nitrogen regulatory protein P-II VPUCM_0941 SM00257 Lysin motif VPUCM_0942 SM00849 Metallo-beta-lactamase superfamily VPUCM_0945 SM00479 VPUCM_0945 VPUCM_0955 SM00382 ATPases associated with a variety of cellular activities VPUCM_0957 SM00342 helix_turn_helix, arabinose operon control protein VPUCM_0959 SM00899 VPUCM_0959 VPUCM_0963 SM00836 DALR anticodon binding domain VPUCM_0963 SM01016 Arginyl tRNA synthetase N terminal dom VPUCM_0966 SM00487 DEAD-like helicases superfamily VPUCM_0966 SM00491 VPUCM_0966 VPUCM_0972 SM00474 3'-5' exonuclease VPUCM_0982 SM00825 Beta-ketoacyl synthase VPUCM_0983 SM00822 VPUCM_0983 VPUCM_0985 SM00825 Beta-ketoacyl synthase VPUCM_0997 SM00563 Phosphate acyltransferases VPUCM_1004 SM01091 Transporter associated domain VPUCM_1005 SM00487 DEAD-like helicases superfamily VPUCM_1005 SM00490 helicase superfamily c-terminal domain VPUCM_1008 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins VPUCM_1015 SM00382 ATPases associated with a variety of cellular activities VPUCM_1015 SM00448 cheY-homologous receiver domain VPUCM_1016 SM00387 Histidine kinase-like ATPases VPUCM_1016 SM00388 His Kinase A (phosphoacceptor) domain VPUCM_1019 SM00382 ATPases associated with a variety of cellular activities VPUCM_1019 SM00994 ClpX C4-type zinc finger VPUCM_1019 SM01086 C-terminal, D2-small domain, of ClpB protein VPUCM_1020 SM00382 ATPases associated with a variety of cellular activities VPUCM_1020 SM00464 Found in ATP-dependent protease La (LON) VPUCM_1021 SM00411 bacterial (prokaryotic) histone like domain VPUCM_1023 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VPUCM_1025 SM01144 VPUCM_1025 VPUCM_1026 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VPUCM_1027 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VPUCM_1033 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain VPUCM_1037 SM00563 Phosphate acyltransferases VPUCM_1040 SM00978 VPUCM_1040 VPUCM_1047 SM00344 helix_turn_helix ASNC type VPUCM_1054 SM00062 Bacterial periplasmic substrate-binding proteins VPUCM_1054 SM00267 diguanylate cyclase VPUCM_1058 SM00530 Helix-turn-helix XRE-family like proteins VPUCM_1068 SM00028 Tetratricopeptide repeats VPUCM_1073 SM00116 Domain in cystathionine beta-synthase and other proteins. VPUCM_1077 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VPUCM_1077 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VPUCM_1088 SM00487 DEAD-like helicases superfamily VPUCM_1088 SM00490 helicase superfamily c-terminal domain VPUCM_1088 SM00982 VPUCM_1088 VPUCM_1088 SM01058 CarD-like/TRCF domain VPUCM_1091 SM00382 ATPases associated with a variety of cellular activities VPUCM_1094 SM00849 Metallo-beta-lactamase superfamily VPUCM_1095 SM00382 ATPases associated with a variety of cellular activities VPUCM_1101 SM00763 PrkA AAA domain VPUCM_1109 SM00382 ATPases associated with a variety of cellular activities VPUCM_1110 SM00062 Bacterial periplasmic substrate-binding proteins VPUCM_1110 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. VPUCM_1113 SM01276 VPUCM_1113 VPUCM_1116 SM00487 DEAD-like helicases superfamily VPUCM_1116 SM00490 helicase superfamily c-terminal domain VPUCM_1117 SM00382 ATPases associated with a variety of cellular activities VPUCM_1117 SM00448 cheY-homologous receiver domain VPUCM_1120 SM00729 Elongator protein 3, MiaB family, Radical SAM VPUCM_1121 SM00852 Probable molybdopterin binding domain VPUCM_1128 SM00382 ATPases associated with a variety of cellular activities VPUCM_1129 SM00382 ATPases associated with a variety of cellular activities VPUCM_1138 SM00382 ATPases associated with a variety of cellular activities VPUCM_1139 SM00642 Alpha-amylase domain VPUCM_1140 SM00267 diguanylate cyclase VPUCM_1147 SM00387 Histidine kinase-like ATPases VPUCM_1147 SM00388 His Kinase A (phosphoacceptor) domain VPUCM_1147 SM00448 cheY-homologous receiver domain VPUCM_1155 SM00507 HNH nucleases VPUCM_1159 SM00487 DEAD-like helicases superfamily VPUCM_1159 SM00490 helicase superfamily c-terminal domain VPUCM_1165 SM00220 Serine/Threonine protein kinases, catalytic domain VPUCM_1168 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VPUCM_1168 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VPUCM_1171 SM00347 helix_turn_helix multiple antibiotic resistance protein VPUCM_1181 SM01002 Alanine dehydrogenase/PNT, C-terminal domain VPUCM_1181 SM01003 Alanine dehydrogenase/PNT, N-terminal domain VPUCM_1182 SM00344 helix_turn_helix ASNC type VPUCM_1183 SM00843 VPUCM_1183 VPUCM_1185 SM00382 ATPases associated with a variety of cellular activities VPUCM_1191 SM00729 Elongator protein 3, MiaB family, Radical SAM VPUCM_1191 SM00876 Biotin and Thiamin Synthesis associated domain VPUCM_1210 SM00528 Domain in histone-like proteins of HNS family VPUCM_1214 SM00382 ATPases associated with a variety of cellular activities VPUCM_1224 SM00052 Putative diguanylate phosphodiesterase VPUCM_1227 SM00840 VPUCM_1227 VPUCM_1237 SM00220 Serine/Threonine protein kinases, catalytic domain VPUCM_1237 SM00364 Leucine-rich repeats, bacterial type VPUCM_1237 SM00369 Leucine-rich repeats, typical (most populated) subfamily VPUCM_1238 SM00387 Histidine kinase-like ATPases VPUCM_1238 SM00388 His Kinase A (phosphoacceptor) domain VPUCM_1239 SM00448 cheY-homologous receiver domain VPUCM_1239 SM00862 Transcriptional regulatory protein, C terminal VPUCM_1240 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VPUCM_1240 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VPUCM_1241 SM00729 Elongator protein 3, MiaB family, Radical SAM VPUCM_1242 SM00052 Putative diguanylate phosphodiesterase VPUCM_1242 SM00091 PAS domain VPUCM_1252 SM00387 Histidine kinase-like ATPases VPUCM_1252 SM00388 His Kinase A (phosphoacceptor) domain VPUCM_1252 SM00448 cheY-homologous receiver domain VPUCM_1256 SM00100 Cyclic nucleotide-monophosphate binding domain VPUCM_1256 SM00419 helix_turn_helix, cAMP Regulatory protein VPUCM_1264 SM00481 DNA polymerase alpha chain like domain VPUCM_1267 SM00363 S4 RNA-binding domain VPUCM_1269 SM00841 Elongation factor P, C-terminal VPUCM_1269 SM01185 VPUCM_1269 VPUCM_1271 SM00486 DNA polymerase type-B family VPUCM_1272 SM00421 helix_turn_helix, Lux Regulon VPUCM_1272 SM00448 cheY-homologous receiver domain VPUCM_1273 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VPUCM_1273 SM00465 GIY-YIG type nucleases (URI domain) VPUCM_1281 SM00852 Probable molybdopterin binding domain VPUCM_1286 SM00434 DNA Topoisomerase IV VPUCM_1304 SM00849 Metallo-beta-lactamase superfamily VPUCM_1310 SM00387 Histidine kinase-like ATPases VPUCM_1310 SM01049 VPUCM_1310 VPUCM_1311 SM00421 helix_turn_helix, Lux Regulon VPUCM_1311 SM00448 cheY-homologous receiver domain VPUCM_1312 SM00347 helix_turn_helix multiple antibiotic resistance protein VPUCM_1314 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VPUCM_1314 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VPUCM_1315 SM00479 VPUCM_1315 VPUCM_1316 SM00100 Cyclic nucleotide-monophosphate binding domain VPUCM_1316 SM00116 Domain in cystathionine beta-synthase and other proteins. VPUCM_1321 SM00345 helix_turn_helix gluconate operon transcriptional repressor VPUCM_1324 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VPUCM_1324 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VPUCM_1328 SM00052 Putative diguanylate phosphodiesterase VPUCM_1333 SM00387 Histidine kinase-like ATPases VPUCM_1333 SM00388 His Kinase A (phosphoacceptor) domain VPUCM_1333 SM00448 cheY-homologous receiver domain VPUCM_1339 SM00091 PAS domain VPUCM_1339 SM00382 ATPases associated with a variety of cellular activities VPUCM_1398 SM00357 Cold shock protein domain VPUCM_1428 SM00357 Cold shock protein domain VPUCM_1514 SM00382 ATPases associated with a variety of cellular activities VPUCM_1514 SM00448 cheY-homologous receiver domain VPUCM_1526 SM00448 cheY-homologous receiver domain VPUCM_1527 SM00267 diguanylate cyclase VPUCM_1530 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VPUCM_1536 SM01144 VPUCM_1536 VPUCM_1540 SM00855 Phosphoglycerate mutase family VPUCM_1545 SM00100 Cyclic nucleotide-monophosphate binding domain VPUCM_1545 SM00387 Histidine kinase-like ATPases VPUCM_1546 SM00448 cheY-homologous receiver domain VPUCM_1547 SM00052 Putative diguanylate phosphodiesterase VPUCM_1547 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VPUCM_1547 SM00091 PAS domain VPUCM_1547 SM00267 diguanylate cyclase VPUCM_1548 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VPUCM_1555 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. VPUCM_1556 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VPUCM_1563 SM00382 ATPases associated with a variety of cellular activities VPUCM_1564 SM00382 ATPases associated with a variety of cellular activities VPUCM_1572 SM00267 diguanylate cyclase VPUCM_1572 SM01079 VPUCM_1572 VPUCM_1573 SM00479 VPUCM_1573 VPUCM_1578 SM00926 Molybdopterin oxidoreductase Fe4S4 domain VPUCM_1584 SM00382 ATPases associated with a variety of cellular activities VPUCM_1584 SM00487 DEAD-like helicases superfamily VPUCM_1584 SM00490 helicase superfamily c-terminal domain VPUCM_1584 SM00847 Helicase associated domain (HA2) Add an annotation VPUCM_1593 SM00852 Probable molybdopterin binding domain VPUCM_1595 SM00382 ATPases associated with a variety of cellular activities VPUCM_1598 SM00382 ATPases associated with a variety of cellular activities VPUCM_1598 SM00448 cheY-homologous receiver domain VPUCM_1599 SM00387 Histidine kinase-like ATPases VPUCM_1599 SM00388 His Kinase A (phosphoacceptor) domain VPUCM_1600 SM00382 ATPases associated with a variety of cellular activities VPUCM_1607 SM00926 Molybdopterin oxidoreductase Fe4S4 domain VPUCM_1618 SM00248 ankyrin repeats VPUCM_1631 SM00382 ATPases associated with a variety of cellular activities VPUCM_1637 SM00100 Cyclic nucleotide-monophosphate binding domain VPUCM_1637 SM00419 helix_turn_helix, cAMP Regulatory protein VPUCM_1647 SM00897 FIST N domain VPUCM_1647 SM01204 VPUCM_1647 VPUCM_1648 SM00387 Histidine kinase-like ATPases VPUCM_1648 SM00388 His Kinase A (phosphoacceptor) domain VPUCM_1648 SM00448 cheY-homologous receiver domain VPUCM_1675 SM00382 ATPases associated with a variety of cellular activities VPUCM_1677 SM00981 VPUCM_1677 VPUCM_1683 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VPUCM_1683 SM00245 tail specific protease VPUCM_1684 SM00945 ProQ/FINO family VPUCM_1686 SM00382 ATPases associated with a variety of cellular activities VPUCM_1690 SM00316 Ribosomal protein S1-like RNA-binding domain VPUCM_1696 SM00062 Bacterial periplasmic substrate-binding proteins VPUCM_1699 SM00382 ATPases associated with a variety of cellular activities VPUCM_1704 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VPUCM_1706 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase VPUCM_1712 SM00327 von Willebrand factor (vWF) type A domain VPUCM_1712 SM00736 Dystroglycan-type cadherin-like domains. VPUCM_1716 SM00028 Tetratricopeptide repeats VPUCM_1716 SM00267 diguanylate cyclase VPUCM_1721 SM00020 Trypsin-like serine protease VPUCM_1721 SM00495 Chitin-binding domain type 3 VPUCM_1729 SM00345 helix_turn_helix gluconate operon transcriptional repressor VPUCM_1729 SM00895 VPUCM_1729 VPUCM_1749 SM00382 ATPases associated with a variety of cellular activities VPUCM_1779 SM00342 helix_turn_helix, arabinose operon control protein VPUCM_1784 SM00382 ATPases associated with a variety of cellular activities VPUCM_1788 SM01350 VPUCM_1788 VPUCM_1791 SM00448 cheY-homologous receiver domain VPUCM_1792 SM00091 PAS domain VPUCM_1792 SM00387 Histidine kinase-like ATPases VPUCM_1798 SM00671 Sel1-like repeats. VPUCM_1805 SM00479 VPUCM_1805 VPUCM_1806 SM00100 Cyclic nucleotide-monophosphate binding domain VPUCM_1806 SM00116 Domain in cystathionine beta-synthase and other proteins. VPUCM_1807 SM00382 ATPases associated with a variety of cellular activities VPUCM_1812 SM01236 VPUCM_1812 VPUCM_1813 SM00822 VPUCM_1813 VPUCM_1815 SM00448 cheY-homologous receiver domain VPUCM_1815 SM00862 Transcriptional regulatory protein, C terminal VPUCM_1816 SM00387 Histidine kinase-like ATPases VPUCM_1816 SM00388 His Kinase A (phosphoacceptor) domain VPUCM_1831 SM00028 Tetratricopeptide repeats VPUCM_1834 SM00052 Putative diguanylate phosphodiesterase VPUCM_1834 SM00267 diguanylate cyclase VPUCM_1834 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VPUCM_1835 SM00387 Histidine kinase-like ATPases VPUCM_1835 SM00388 His Kinase A (phosphoacceptor) domain VPUCM_1835 SM00448 cheY-homologous receiver domain VPUCM_1838 SM01266 VPUCM_1838 VPUCM_1841 SM01118 VPUCM_1841 VPUCM_1844 SM00347 helix_turn_helix multiple antibiotic resistance protein VPUCM_1846 SM00342 helix_turn_helix, arabinose operon control protein VPUCM_1847 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain VPUCM_1848 SM00635 Bacterial Ig-like domain 2 VPUCM_1850 SM00052 Putative diguanylate phosphodiesterase VPUCM_1851 SM01131 VPUCM_1851 VPUCM_1858 SM00530 Helix-turn-helix XRE-family like proteins VPUCM_1860 SM01230 VPUCM_1860 VPUCM_1881 SM00382 ATPases associated with a variety of cellular activities VPUCM_1882 SM00382 ATPases associated with a variety of cellular activities VPUCM_1884 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins VPUCM_1888 SM00382 ATPases associated with a variety of cellular activities VPUCM_1889 SM01130 VPUCM_1889 VPUCM_1895 SM00345 helix_turn_helix gluconate operon transcriptional repressor VPUCM_1895 SM00895 VPUCM_1895 VPUCM_1897 SM00245 tail specific protease VPUCM_1906 SM00382 ATPases associated with a variety of cellular activities VPUCM_1910 SM00855 Phosphoglycerate mutase family VPUCM_1917 SM00479 VPUCM_1917 VPUCM_1924 SM00411 bacterial (prokaryotic) histone like domain VPUCM_1926 SM00873 B3/4 domain VPUCM_1926 SM00874 tRNA synthetase B5 domain VPUCM_1926 SM00896 Ferredoxin-fold anticodon binding domain VPUCM_1928 SM00267 diguanylate cyclase VPUCM_1933 SM00530 Helix-turn-helix XRE-family like proteins VPUCM_1938 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain VPUCM_1941 SM00345 helix_turn_helix gluconate operon transcriptional repressor VPUCM_1941 SM00866 VPUCM_1941 VPUCM_1959 SM00487 DEAD-like helicases superfamily VPUCM_1959 SM00490 helicase superfamily c-terminal domain VPUCM_1959 SM00847 Helicase associated domain (HA2) Add an annotation VPUCM_1960 SM00919 Malic enzyme, NAD binding domain VPUCM_1960 SM01274 VPUCM_1960 VPUCM_1963 SM00267 diguanylate cyclase VPUCM_1968 SM00382 ATPases associated with a variety of cellular activities VPUCM_1969 SM00382 ATPases associated with a variety of cellular activities VPUCM_1973 SM00100 Cyclic nucleotide-monophosphate binding domain VPUCM_1973 SM00387 Histidine kinase-like ATPases VPUCM_1974 SM00448 cheY-homologous receiver domain VPUCM_1992 SM00382 ATPases associated with a variety of cellular activities VPUCM_20003 SM00382 ATPases associated with a variety of cellular activities VPUCM_20004 SM00382 ATPases associated with a variety of cellular activities VPUCM_20008 SM00387 Histidine kinase-like ATPases VPUCM_20008 SM00388 His Kinase A (phosphoacceptor) domain VPUCM_20008 SM00448 cheY-homologous receiver domain VPUCM_20014 SM00382 ATPases associated with a variety of cellular activities VPUCM_20018 SM00387 Histidine kinase-like ATPases VPUCM_20019 SM00448 cheY-homologous receiver domain VPUCM_20019 SM00850 LytTr DNA-binding domain VPUCM_2002 SM00363 S4 RNA-binding domain VPUCM_20022 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VPUCM_20022 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VPUCM_20022 SM01049 VPUCM_20022 VPUCM_20028 SM00382 ATPases associated with a variety of cellular activities VPUCM_20029 SM00345 helix_turn_helix gluconate operon transcriptional repressor VPUCM_2003 SM00487 DEAD-like helicases superfamily VPUCM_2003 SM00490 helicase superfamily c-terminal domain VPUCM_20039 SM00342 helix_turn_helix, arabinose operon control protein VPUCM_20039 SM01009 AlkA N-terminal domain VPUCM_20049 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins VPUCM_20049 SM00495 Chitin-binding domain type 3 VPUCM_20049 SM00636 VPUCM_20049 VPUCM_2005 SM00448 cheY-homologous receiver domain VPUCM_2005 SM00862 Transcriptional regulatory protein, C terminal VPUCM_20053 SM00267 diguanylate cyclase VPUCM_20058 SM00849 Metallo-beta-lactamase superfamily VPUCM_2006 SM00387 Histidine kinase-like ATPases VPUCM_20062 SM00267 diguanylate cyclase VPUCM_20065 SM00829 Enoylreductase VPUCM_20068 SM00479 VPUCM_20068 VPUCM_20069 SM00116 Domain in cystathionine beta-synthase and other proteins. VPUCM_20070 SM00346 helix_turn_helix isocitrate lyase regulation VPUCM_20085 SM00344 helix_turn_helix ASNC type VPUCM_20086 SM00495 Chitin-binding domain type 3 VPUCM_20097 SM00506 Appr-1"-p processing enzyme VPUCM_20113 SM00345 helix_turn_helix gluconate operon transcriptional repressor VPUCM_20120 SM00822 VPUCM_20120 VPUCM_20124 SM00014 Acid phosphatase homologues VPUCM_20130 SM00382 ATPases associated with a variety of cellular activities VPUCM_2014 SM00421 helix_turn_helix, Lux Regulon VPUCM_2014 SM00448 cheY-homologous receiver domain VPUCM_20141 SM00448 cheY-homologous receiver domain VPUCM_20141 SM00862 Transcriptional regulatory protein, C terminal VPUCM_20142 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VPUCM_20142 SM00387 Histidine kinase-like ATPases VPUCM_20142 SM00388 His Kinase A (phosphoacceptor) domain VPUCM_20149 SM00028 Tetratricopeptide repeats VPUCM_2015 SM00387 Histidine kinase-like ATPases VPUCM_2015 SM00388 His Kinase A (phosphoacceptor) domain VPUCM_20157 SM00382 ATPases associated with a variety of cellular activities VPUCM_2016 SM00450 Rhodanese Homology Domain VPUCM_20166 SM00849 Metallo-beta-lactamase superfamily VPUCM_20172 SM00342 helix_turn_helix, arabinose operon control protein VPUCM_20177 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VPUCM_20177 SM00387 Histidine kinase-like ATPases VPUCM_20178 SM00382 ATPases associated with a variety of cellular activities VPUCM_20178 SM00448 cheY-homologous receiver domain VPUCM_20179 SM00267 diguanylate cyclase VPUCM_20191 SM00267 diguanylate cyclase VPUCM_20191 SM01079 VPUCM_20191 VPUCM_20192 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VPUCM_20193 SM00530 Helix-turn-helix XRE-family like proteins VPUCM_20195 SM00267 diguanylate cyclase VPUCM_20202 SM01266 VPUCM_20202 VPUCM_20214 SM01057 Eukaryotic-type carbonic anhydrase VPUCM_20217 SM00382 ATPases associated with a variety of cellular activities VPUCM_2022 SM00382 ATPases associated with a variety of cellular activities VPUCM_20225 SM00354 helix_turn _helix lactose operon repressor VPUCM_20231 SM00382 ATPases associated with a variety of cellular activities VPUCM_20233 SM00345 helix_turn_helix gluconate operon transcriptional repressor VPUCM_20233 SM00866 VPUCM_20233 VPUCM_20238 SM00631 VPUCM_20238 VPUCM_2025 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VPUCM_2025 SM00382 ATPases associated with a variety of cellular activities VPUCM_20254 SM00858 VPUCM_20254 VPUCM_20269 SM01240 VPUCM_20269 VPUCM_20273 SM00450 Rhodanese Homology Domain VPUCM_20274 SM00883 Chaperonin 10 Kd subunit VPUCM_20290 SM00420 helix_turn_helix, Deoxyribose operon repressor VPUCM_20290 SM01134 VPUCM_20290 VPUCM_20292 SM01060 VPUCM_20292 VPUCM_20293 SM00248 ankyrin repeats VPUCM_2030 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VPUCM_2030 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VPUCM_20312 SM00838 Elongation factor G C-terminus VPUCM_20312 SM00889 Elongation factor G, domain IV VPUCM_20313 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain VPUCM_20318 SM00422 helix_turn_helix, mercury resistance VPUCM_2032 SM00155 Phospholipase D. Active site motifs. VPUCM_20320 SM00028 Tetratricopeptide repeats VPUCM_20322 SM01022 VPUCM_20322 VPUCM_20324 SM00155 Phospholipase D. Active site motifs. VPUCM_20334 SM00382 ATPases associated with a variety of cellular activities VPUCM_20339 SM00345 helix_turn_helix gluconate operon transcriptional repressor VPUCM_20339 SM00866 VPUCM_20339 VPUCM_20342 SM00421 helix_turn_helix, Lux Regulon VPUCM_20343 SM00530 Helix-turn-helix XRE-family like proteins VPUCM_20344 SM00267 diguanylate cyclase VPUCM_20353 SM00421 helix_turn_helix, Lux Regulon VPUCM_20358 SM00870 VPUCM_20358 VPUCM_20359 SM00788 Adenylosuccinate synthetase VPUCM_20365 SM00342 helix_turn_helix, arabinose operon control protein VPUCM_20368 SM00829 Enoylreductase VPUCM_20374 SM00487 DEAD-like helicases superfamily VPUCM_20374 SM00490 helicase superfamily c-terminal domain VPUCM_20380 SM00342 helix_turn_helix, arabinose operon control protein VPUCM_20380 SM00871 Bacterial transcription activator, effector binding domain VPUCM_20387 SM00822 VPUCM_20387 VPUCM_20398 SM00936 Penicillin-binding protein 5, C-terminal domain VPUCM_20404 SM00357 Cold shock protein domain VPUCM_20408 SM00347 helix_turn_helix multiple antibiotic resistance protein VPUCM_20419 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VPUCM_20419 SM00387 Histidine kinase-like ATPases VPUCM_20419 SM00388 His Kinase A (phosphoacceptor) domain VPUCM_20420 SM00448 cheY-homologous receiver domain VPUCM_20420 SM00862 Transcriptional regulatory protein, C terminal VPUCM_20422 SM01065 Starch binding domain VPUCM_2043 SM00382 ATPases associated with a variety of cellular activities VPUCM_20430 SM00563 Phosphate acyltransferases VPUCM_20431 SM00530 Helix-turn-helix XRE-family like proteins VPUCM_20432 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VPUCM_20437 SM00924 MgtE intracellular N domain VPUCM_20440 SM00345 helix_turn_helix gluconate operon transcriptional repressor VPUCM_20442 SM00344 helix_turn_helix ASNC type VPUCM_20446 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VPUCM_20447 SM00387 Histidine kinase-like ATPases VPUCM_20447 SM00388 His Kinase A (phosphoacceptor) domain VPUCM_20447 SM00448 cheY-homologous receiver domain VPUCM_20454 SM00465 GIY-YIG type nucleases (URI domain) VPUCM_20456 SM00387 Histidine kinase-like ATPases VPUCM_20456 SM00388 His Kinase A (phosphoacceptor) domain VPUCM_20456 SM00448 cheY-homologous receiver domain VPUCM_20457 SM00347 helix_turn_helix multiple antibiotic resistance protein VPUCM_20462 SM00344 helix_turn_helix ASNC type VPUCM_2047 SM00382 ATPases associated with a variety of cellular activities VPUCM_20471 SM00822 VPUCM_20471 VPUCM_20478 SM00926 Molybdopterin oxidoreductase Fe4S4 domain VPUCM_2048 SM00382 ATPases associated with a variety of cellular activities VPUCM_20481 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VPUCM_20481 SM00387 Histidine kinase-like ATPases VPUCM_20482 SM00421 helix_turn_helix, Lux Regulon VPUCM_20482 SM00448 cheY-homologous receiver domain VPUCM_20489 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VPUCM_20495 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VPUCM_20496 SM00861 Transketolase, pyrimidine binding domain VPUCM_2050 SM01131 VPUCM_2050 VPUCM_20501 SM00636 VPUCM_20501 VPUCM_20502 SM00052 Putative diguanylate phosphodiesterase VPUCM_20502 SM00267 diguanylate cyclase VPUCM_20503 SM00450 Rhodanese Homology Domain VPUCM_20507 SM00852 Probable molybdopterin binding domain VPUCM_20516 SM00448 cheY-homologous receiver domain VPUCM_20517 SM00091 PAS domain VPUCM_20519 SM01240 VPUCM_20519 VPUCM_20521 SM00893 Electron transfer flavoprotein domain VPUCM_20522 SM00893 Electron transfer flavoprotein domain VPUCM_20525 SM00382 ATPases associated with a variety of cellular activities VPUCM_20530 SM00382 ATPases associated with a variety of cellular activities VPUCM_20536 SM00422 helix_turn_helix, mercury resistance VPUCM_20542 SM00345 helix_turn_helix gluconate operon transcriptional repressor VPUCM_20543 SM01266 VPUCM_20543 VPUCM_20548 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VPUCM_20548 SM00091 PAS domain VPUCM_20548 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VPUCM_20548 SM00387 Histidine kinase-like ATPases VPUCM_20548 SM00388 His Kinase A (phosphoacceptor) domain VPUCM_20548 SM00448 cheY-homologous receiver domain VPUCM_20550 SM00878 Biotin carboxylase C-terminal domain VPUCM_20554 SM00422 helix_turn_helix, mercury resistance VPUCM_20561 SM00822 VPUCM_20561 VPUCM_20562 SM00028 Tetratricopeptide repeats VPUCM_20562 SM00267 diguanylate cyclase VPUCM_20568 SM00382 ATPases associated with a variety of cellular activities VPUCM_20571 SM00244 prohibitin homologues VPUCM_20574 SM00052 Putative diguanylate phosphodiesterase VPUCM_20574 SM00091 PAS domain VPUCM_20574 SM00267 diguanylate cyclase VPUCM_20576 SM00387 Histidine kinase-like ATPases VPUCM_20576 SM00388 His Kinase A (phosphoacceptor) domain VPUCM_20576 SM00448 cheY-homologous receiver domain VPUCM_20589 SM00052 Putative diguanylate phosphodiesterase VPUCM_20589 SM00267 diguanylate cyclase VPUCM_20591 SM00382 ATPases associated with a variety of cellular activities VPUCM_20595 SM00354 helix_turn _helix lactose operon repressor VPUCM_20606 SM00382 ATPases associated with a variety of cellular activities VPUCM_20607 SM00422 helix_turn_helix, mercury resistance VPUCM_20609 SM00342 helix_turn_helix, arabinose operon control protein VPUCM_20619 SM00851 MGS-like domain VPUCM_20621 SM00387 Histidine kinase-like ATPases VPUCM_20621 SM00388 His Kinase A (phosphoacceptor) domain VPUCM_20621 SM00448 cheY-homologous receiver domain VPUCM_20624 SM00862 Transcriptional regulatory protein, C terminal VPUCM_20627 SM00028 Tetratricopeptide repeats VPUCM_20634 SM00327 von Willebrand factor (vWF) type A domain VPUCM_20635 SM00327 von Willebrand factor (vWF) type A domain VPUCM_20639 SM00046 Diacylglycerol kinase catalytic domain (presumed) VPUCM_20644 SM00028 Tetratricopeptide repeats VPUCM_20645 SM00990 VPUCM_20645 VPUCM_2066 SM00342 helix_turn_helix, arabinose operon control protein VPUCM_20663 SM00387 Histidine kinase-like ATPases VPUCM_20664 SM00448 cheY-homologous receiver domain VPUCM_20666 SM00704 CDGSH-type zinc finger. Function unknown. VPUCM_20671 SM00953 VPUCM_20671 VPUCM_20679 SM00924 MgtE intracellular N domain VPUCM_2068 SM00382 ATPases associated with a variety of cellular activities VPUCM_20686 SM00422 helix_turn_helix, mercury resistance VPUCM_20693 SM00382 ATPases associated with a variety of cellular activities VPUCM_20695 SM00479 VPUCM_20695 VPUCM_20702 SM00382 ATPases associated with a variety of cellular activities VPUCM_20707 SM00530 Helix-turn-helix XRE-family like proteins VPUCM_20717 SM00354 helix_turn _helix lactose operon repressor VPUCM_20721 SM00052 Putative diguanylate phosphodiesterase VPUCM_20723 SM00062 Bacterial periplasmic substrate-binding proteins VPUCM_20723 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. VPUCM_20725 SM00382 ATPases associated with a variety of cellular activities VPUCM_20729 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VPUCM_20729 SM00387 Histidine kinase-like ATPases VPUCM_20729 SM00388 His Kinase A (phosphoacceptor) domain VPUCM_20730 SM00448 cheY-homologous receiver domain VPUCM_20733 SM00342 helix_turn_helix, arabinose operon control protein VPUCM_20734 SM00495 Chitin-binding domain type 3 VPUCM_20734 SM00636 VPUCM_20734 VPUCM_20740 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VPUCM_20743 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VPUCM_20746 SM00487 DEAD-like helicases superfamily VPUCM_20746 SM00490 helicase superfamily c-terminal domain VPUCM_20747 SM00052 Putative diguanylate phosphodiesterase VPUCM_20751 SM00867 YceI-like domain VPUCM_20752 SM00116 Domain in cystathionine beta-synthase and other proteins. VPUCM_20760 SM00782 PhnA Zinc-Ribbon VPUCM_20773 SM00271 DnaJ molecular chaperone homology domain VPUCM_20775 SM00052 Putative diguanylate phosphodiesterase VPUCM_20775 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VPUCM_20775 SM00267 diguanylate cyclase VPUCM_20778 SM00382 ATPases associated with a variety of cellular activities VPUCM_20781 SM00797 Allophanate hydrolase subunit 2 VPUCM_20782 SM00796 Allophanate hydrolase subunit 1 VPUCM_20784 SM00091 PAS domain VPUCM_20784 SM00267 diguanylate cyclase VPUCM_20784 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VPUCM_20789 SM00881 CoA binding domain VPUCM_20812 SM00448 cheY-homologous receiver domain VPUCM_20812 SM00862 Transcriptional regulatory protein, C terminal VPUCM_20813 SM00387 Histidine kinase-like ATPases VPUCM_20813 SM00388 His Kinase A (phosphoacceptor) domain VPUCM_20815 SM01002 Alanine dehydrogenase/PNT, C-terminal domain VPUCM_20815 SM01003 Alanine dehydrogenase/PNT, N-terminal domain VPUCM_20818 SM00267 diguanylate cyclase VPUCM_2082 SM00421 helix_turn_helix, Lux Regulon VPUCM_2082 SM00448 cheY-homologous receiver domain VPUCM_20820 SM00267 diguanylate cyclase VPUCM_20820 SM00448 cheY-homologous receiver domain VPUCM_20822 SM00382 ATPases associated with a variety of cellular activities VPUCM_2083 SM00387 Histidine kinase-like ATPases VPUCM_2083 SM00388 His Kinase A (phosphoacceptor) domain VPUCM_20831 SM00342 helix_turn_helix, arabinose operon control protein VPUCM_20842 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VPUCM_20844 SM00450 Rhodanese Homology Domain VPUCM_20849 SM00421 helix_turn_helix, Lux Regulon VPUCM_20849 SM00448 cheY-homologous receiver domain VPUCM_20850 SM00387 Histidine kinase-like ATPases VPUCM_20859 SM00342 helix_turn_helix, arabinose operon control protein VPUCM_2086 SM00926 Molybdopterin oxidoreductase Fe4S4 domain VPUCM_20877 SM00974 VPUCM_20877 VPUCM_20881 SM00880 VPUCM_20881 VPUCM_20884 SM00642 Alpha-amylase domain VPUCM_20885 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VPUCM_20885 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VPUCM_20886 SM01005 Alanine racemase, C-terminal domain VPUCM_20893 SM00382 ATPases associated with a variety of cellular activities VPUCM_20899 SM00014 Acid phosphatase homologues VPUCM_20905 SM00260 Two component signalling adaptor domain VPUCM_20905 SM00448 cheY-homologous receiver domain VPUCM_20907 SM00448 cheY-homologous receiver domain VPUCM_20909 SM00421 helix_turn_helix, Lux Regulon VPUCM_20909 SM00448 cheY-homologous receiver domain VPUCM_20911 SM00267 diguanylate cyclase VPUCM_20912 SM00421 helix_turn_helix, Lux Regulon VPUCM_20912 SM00448 cheY-homologous receiver domain VPUCM_20913 SM00052 Putative diguanylate phosphodiesterase VPUCM_20913 SM00448 cheY-homologous receiver domain VPUCM_20914 SM00062 Bacterial periplasmic substrate-binding proteins VPUCM_20914 SM00387 Histidine kinase-like ATPases VPUCM_20914 SM00388 His Kinase A (phosphoacceptor) domain VPUCM_20914 SM00448 cheY-homologous receiver domain VPUCM_20920 SM00387 Histidine kinase-like ATPases VPUCM_20920 SM00448 cheY-homologous receiver domain VPUCM_20925 SM00342 helix_turn_helix, arabinose operon control protein VPUCM_20935 SM00382 ATPases associated with a variety of cellular activities VPUCM_20935 SM01086 C-terminal, D2-small domain, of ClpB protein VPUCM_20944 SM00331 Sigma factor PP2C-like phosphatases VPUCM_20944 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain VPUCM_20950 SM00240 Forkhead associated domain VPUCM_20951 SM00220 Serine/Threonine protein kinases, catalytic domain VPUCM_20952 SM00448 cheY-homologous receiver domain VPUCM_20956 SM00331 Sigma factor PP2C-like phosphatases VPUCM_20956 SM00448 cheY-homologous receiver domain VPUCM_20963 SM00382 ATPases associated with a variety of cellular activities VPUCM_20967 SM01012 VPUCM_20967 VPUCM_20975 SM00028 Tetratricopeptide repeats VPUCM_20975 SM00267 diguanylate cyclase VPUCM_20979 SM00098 Alkaline phosphatase homologues VPUCM_20980 SM00871 Bacterial transcription activator, effector binding domain VPUCM_20981 SM00388 His Kinase A (phosphoacceptor) domain VPUCM_20982 SM00448 cheY-homologous receiver domain VPUCM_20982 SM00862 Transcriptional regulatory protein, C terminal VPUCM_2099 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family VPUCM_20992 SM00861 Transketolase, pyrimidine binding domain VPUCM_2100 SM00028 Tetratricopeptide repeats VPUCM_21001 SM00062 Bacterial periplasmic substrate-binding proteins VPUCM_21001 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. VPUCM_21002 SM00382 ATPases associated with a variety of cellular activities VPUCM_21016 SM00822 VPUCM_21016 VPUCM_2102 SM00411 bacterial (prokaryotic) histone like domain VPUCM_21023 SM00422 helix_turn_helix, mercury resistance VPUCM_2103 SM00316 Ribosomal protein S1-like RNA-binding domain VPUCM_21031 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VPUCM_21031 SM00091 PAS domain VPUCM_21031 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VPUCM_21034 SM00052 Putative diguanylate phosphodiesterase VPUCM_21034 SM00267 diguanylate cyclase VPUCM_21035 SM00487 DEAD-like helicases superfamily VPUCM_21035 SM00490 helicase superfamily c-terminal domain VPUCM_21036 SM00357 Cold shock protein domain VPUCM_21036 SM00955 VPUCM_21036 VPUCM_21037 SM00342 helix_turn_helix, arabinose operon control protein VPUCM_21047 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VPUCM_21048 SM00382 ATPases associated with a variety of cellular activities VPUCM_21049 SM00052 Putative diguanylate phosphodiesterase VPUCM_21053 SM00487 DEAD-like helicases superfamily VPUCM_21053 SM00490 helicase superfamily c-terminal domain VPUCM_21054 SM00833 Cobalamin synthesis protein cobW C-terminal domain VPUCM_2106 SM00822 VPUCM_2106 VPUCM_21060 SM00487 DEAD-like helicases superfamily VPUCM_21060 SM00490 helicase superfamily c-terminal domain VPUCM_21081 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VPUCM_21081 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VPUCM_21084 SM00382 ATPases associated with a variety of cellular activities VPUCM_21088 SM00062 Bacterial periplasmic substrate-binding proteins VPUCM_21088 SM00267 diguanylate cyclase VPUCM_21089 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VPUCM_21089 SM00091 PAS domain VPUCM_21089 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VPUCM_2109 SM00481 DNA polymerase alpha chain like domain VPUCM_21090 SM00357 Cold shock protein domain VPUCM_21091 SM01322 VPUCM_21091 VPUCM_2110 SM00260 Two component signalling adaptor domain VPUCM_2110 SM00448 cheY-homologous receiver domain VPUCM_21110 SM00342 helix_turn_helix, arabinose operon control protein VPUCM_21122 SM00052 Putative diguanylate phosphodiesterase VPUCM_21122 SM00267 diguanylate cyclase VPUCM_21128 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VPUCM_21128 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VPUCM_21132 SM00530 Helix-turn-helix XRE-family like proteins VPUCM_21134 SM00481 DNA polymerase alpha chain like domain VPUCM_21141 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VPUCM_21143 SM00342 helix_turn_helix, arabinose operon control protein VPUCM_21148 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VPUCM_21148 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VPUCM_21151 SM00382 ATPases associated with a variety of cellular activities VPUCM_21155 SM00926 Molybdopterin oxidoreductase Fe4S4 domain VPUCM_21163 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VPUCM_21163 SM00267 diguanylate cyclase VPUCM_21172 SM00382 ATPases associated with a variety of cellular activities VPUCM_21177 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VPUCM_21178 SM00642 Alpha-amylase domain VPUCM_21190 SM00128 Inositol polyphosphate phosphatase, catalytic domain homologues VPUCM_21195 SM00917 LeuA allosteric (dimerisation) domain VPUCM_21196 SM00342 helix_turn_helix, arabinose operon control protein VPUCM_21202 SM00260 Two component signalling adaptor domain VPUCM_21202 SM00448 cheY-homologous receiver domain VPUCM_21207 SM00729 Elongator protein 3, MiaB family, Radical SAM VPUCM_21213 SM00382 ATPases associated with a variety of cellular activities VPUCM_21229 SM00342 helix_turn_helix, arabinose operon control protein VPUCM_2123 SM00825 Beta-ketoacyl synthase VPUCM_21236 SM00382 ATPases associated with a variety of cellular activities VPUCM_21248 SM01022 VPUCM_21248 VPUCM_2125 SM00822 VPUCM_2125 VPUCM_21250 SM00829 Enoylreductase VPUCM_21252 SM01060 VPUCM_21252 VPUCM_21257 SM00342 helix_turn_helix, arabinose operon control protein VPUCM_2126 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. VPUCM_21263 SM00052 Putative diguanylate phosphodiesterase VPUCM_21266 SM00448 cheY-homologous receiver domain VPUCM_21266 SM00862 Transcriptional regulatory protein, C terminal VPUCM_21267 SM00387 Histidine kinase-like ATPases VPUCM_21267 SM00388 His Kinase A (phosphoacceptor) domain VPUCM_21268 SM00382 ATPases associated with a variety of cellular activities VPUCM_21270 SM00382 ATPases associated with a variety of cellular activities VPUCM_21275 SM00382 ATPases associated with a variety of cellular activities VPUCM_21277 SM00421 helix_turn_helix, Lux Regulon VPUCM_21278 SM00421 helix_turn_helix, Lux Regulon VPUCM_21280 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VPUCM_21280 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VPUCM_21285 SM00327 von Willebrand factor (vWF) type A domain VPUCM_21286 SM00327 von Willebrand factor (vWF) type A domain VPUCM_21288 SM00267 diguanylate cyclase VPUCM_21289 SM00382 ATPases associated with a variety of cellular activities VPUCM_21293 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VPUCM_21293 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VPUCM_21299 SM00487 DEAD-like helicases superfamily VPUCM_21299 SM00490 helicase superfamily c-terminal domain VPUCM_21302 SM00257 Lysin motif VPUCM_21304 SM00422 helix_turn_helix, mercury resistance VPUCM_21308 SM00028 Tetratricopeptide repeats VPUCM_21309 SM00267 diguanylate cyclase VPUCM_21313 SM00382 ATPases associated with a variety of cellular activities VPUCM_21319 SM00587 ZnF_C4 abd HLH domain containing kinases domain VPUCM_2132 SM00363 S4 RNA-binding domain VPUCM_21322 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VPUCM_21322 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VPUCM_21325 SM00382 ATPases associated with a variety of cellular activities VPUCM_21332 SM01057 Eukaryotic-type carbonic anhydrase VPUCM_21333 SM00972 Spore Coat Protein U domain VPUCM_21337 SM00972 Spore Coat Protein U domain VPUCM_21338 SM00829 Enoylreductase VPUCM_2134 SM00316 Ribosomal protein S1-like RNA-binding domain VPUCM_21340 SM00052 Putative diguanylate phosphodiesterase VPUCM_21340 SM00267 diguanylate cyclase VPUCM_21341 SM00062 Bacterial periplasmic substrate-binding proteins VPUCM_21344 SM00388 His Kinase A (phosphoacceptor) domain VPUCM_21345 SM00448 cheY-homologous receiver domain VPUCM_21345 SM00862 Transcriptional regulatory protein, C terminal VPUCM_21355 SM00481 DNA polymerase alpha chain like domain VPUCM_21359 SM00020 Trypsin-like serine protease VPUCM_2136 SM00226 Low molecular weight phosphatase family VPUCM_21361 SM00382 ATPases associated with a variety of cellular activities VPUCM_21366 SM00382 ATPases associated with a variety of cellular activities VPUCM_21416 SM00342 helix_turn_helix, arabinose operon control protein VPUCM_21417 SM00642 Alpha-amylase domain VPUCM_21418 SM00936 Penicillin-binding protein 5, C-terminal domain VPUCM_21421 SM00450 Rhodanese Homology Domain VPUCM_2143 SM00345 helix_turn_helix gluconate operon transcriptional repressor VPUCM_21438 SM00642 Alpha-amylase domain VPUCM_21440 SM00642 Alpha-amylase domain VPUCM_21444 SM00421 helix_turn_helix, Lux Regulon VPUCM_21455 SM00966 SpoVT / AbrB like domain VPUCM_21459 SM00671 Sel1-like repeats. VPUCM_21460 SM00642 Alpha-amylase domain VPUCM_21462 SM00642 Alpha-amylase domain VPUCM_21466 SM00642 Alpha-amylase domain VPUCM_21467 SM00857 Resolvase, N terminal domain VPUCM_21473 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VPUCM_21473 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VPUCM_21474 SM00382 ATPases associated with a variety of cellular activities VPUCM_21486 SM00387 Histidine kinase-like ATPases VPUCM_21487 SM00448 cheY-homologous receiver domain VPUCM_21487 SM00862 Transcriptional regulatory protein, C terminal VPUCM_2149 SM00028 Tetratricopeptide repeats VPUCM_21498 SM00347 helix_turn_helix multiple antibiotic resistance protein VPUCM_21508 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VPUCM_21511 SM00829 Enoylreductase VPUCM_21512 SM00342 helix_turn_helix, arabinose operon control protein VPUCM_21514 SM00487 DEAD-like helicases superfamily VPUCM_21514 SM00490 helicase superfamily c-terminal domain VPUCM_21518 SM00342 helix_turn_helix, arabinose operon control protein VPUCM_21520 SM00382 ATPases associated with a variety of cellular activities VPUCM_21522 SM00344 helix_turn_helix ASNC type VPUCM_21527 SM00360 RNA recognition motif VPUCM_21532 SM00342 helix_turn_helix, arabinose operon control protein VPUCM_21533 SM00421 helix_turn_helix, Lux Regulon VPUCM_21535 SM00387 Histidine kinase-like ATPases VPUCM_21535 SM00388 His Kinase A (phosphoacceptor) domain VPUCM_21536 SM00448 cheY-homologous receiver domain VPUCM_21539 SM00052 Putative diguanylate phosphodiesterase VPUCM_21539 SM00267 diguanylate cyclase VPUCM_21540 SM00382 ATPases associated with a variety of cellular activities VPUCM_21555 SM00470 ParB-like nuclease domain VPUCM_2159 SM00382 ATPases associated with a variety of cellular activities VPUCM_2160 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VPUCM_2161 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VPUCM_2177 SM00448 cheY-homologous receiver domain VPUCM_2177 SM00862 Transcriptional regulatory protein, C terminal VPUCM_2179 SM00354 helix_turn _helix lactose operon repressor VPUCM_2186 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain VPUCM_2186 SM00437 Bacterial DNA topoisomerase I DNA-binding domain VPUCM_2186 SM00493 VPUCM_2186 VPUCM_2192 SM00316 Ribosomal protein S1-like RNA-binding domain VPUCM_2194 SM00382 ATPases associated with a variety of cellular activities VPUCM_2194 SM01086 C-terminal, D2-small domain, of ClpB protein VPUCM_2196 SM00357 Cold shock protein domain VPUCM_2201 SM00491 VPUCM_2201 VPUCM_2211 SM00900 VPUCM_2211 VPUCM_2213 SM00478 endonuclease III VPUCM_2213 SM00525 VPUCM_2213 VPUCM_2217 SM00479 VPUCM_2217 VPUCM_2227 SM00859 Semialdehyde dehydrogenase, NAD binding domain VPUCM_2237 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain VPUCM_2237 SM00437 Bacterial DNA topoisomerase I DNA-binding domain VPUCM_2237 SM00493 VPUCM_2237 VPUCM_2241 SM00870 VPUCM_2241 VPUCM_2245 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VPUCM_2247 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VPUCM_2251 SM00098 Alkaline phosphatase homologues VPUCM_2264 SM00493 VPUCM_2264 VPUCM_2266 SM00382 ATPases associated with a variety of cellular activities VPUCM_2270 SM00448 cheY-homologous receiver domain VPUCM_2281 SM00859 Semialdehyde dehydrogenase, NAD binding domain VPUCM_2283 SM00825 Beta-ketoacyl synthase VPUCM_2292 SM00463 Small MutS-related domain VPUCM_2293 SM00855 Phosphoglycerate mutase family VPUCM_2311 SM00382 ATPases associated with a variety of cellular activities VPUCM_2313 SM00260 Two component signalling adaptor domain VPUCM_2314 SM00260 Two component signalling adaptor domain VPUCM_2316 SM00448 cheY-homologous receiver domain VPUCM_2317 SM00073 Histidine Phosphotransfer domain VPUCM_2317 SM00260 Two component signalling adaptor domain VPUCM_2317 SM00387 Histidine kinase-like ATPases VPUCM_2317 SM01231 VPUCM_2317 VPUCM_2319 SM00448 cheY-homologous receiver domain VPUCM_2322 SM00382 ATPases associated with a variety of cellular activities VPUCM_2322 SM00962 SRP54-type protein, GTPase domain VPUCM_2334 SM00382 ATPases associated with a variety of cellular activities VPUCM_2339 SM00382 ATPases associated with a variety of cellular activities VPUCM_2339 SM00448 cheY-homologous receiver domain VPUCM_2340 SM00387 Histidine kinase-like ATPases VPUCM_2340 SM00388 His Kinase A (phosphoacceptor) domain VPUCM_2341 SM00382 ATPases associated with a variety of cellular activities VPUCM_2359 SM01130 VPUCM_2359 VPUCM_2364 SM00028 Tetratricopeptide repeats VPUCM_2374 SM00881 CoA binding domain VPUCM_2377 SM00861 Transketolase, pyrimidine binding domain VPUCM_2398 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. VPUCM_2402 SM00387 Histidine kinase-like ATPases VPUCM_2403 SM00862 Transcriptional regulatory protein, C terminal VPUCM_2408 SM00116 Domain in cystathionine beta-synthase and other proteins. VPUCM_2409 SM00938 Nitrogen regulatory protein P-II VPUCM_2415 SM00028 Tetratricopeptide repeats VPUCM_2425 SM00244 prohibitin homologues VPUCM_2428 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VPUCM_2428 SM00292 breast cancer carboxy-terminal domain VPUCM_2428 SM00532 Ligase N family VPUCM_2429 SM00771 ZipA, C-terminal domain (FtsZ-binding) VPUCM_2441 SM00047 Lysozyme subfamily 2 VPUCM_2451 SM00138 Methyltransferase, chemotaxis proteins VPUCM_2452 SM00260 Two component signalling adaptor domain VPUCM_2452 SM00448 cheY-homologous receiver domain VPUCM_2453 SM00858 VPUCM_2453 VPUCM_2469 SM01081 Putative carbohydrate binding domain VPUCM_2472 SM00463 Small MutS-related domain VPUCM_2473 SM00363 S4 RNA-binding domain VPUCM_2480 SM00937 VPUCM_2480 VPUCM_2484 SM01400 VPUCM_2484 VPUCM_2489 SM00729 Elongator protein 3, MiaB family, Radical SAM VPUCM_2492 SM00116 Domain in cystathionine beta-synthase and other proteins. VPUCM_2492 SM01091 Transporter associated domain VPUCM_2503 SM00936 Penicillin-binding protein 5, C-terminal domain VPUCM_2506 SM00729 Elongator protein 3, MiaB family, Radical SAM VPUCM_2509 SM00862 Transcriptional regulatory protein, C terminal VPUCM_2511 SM00642 Alpha-amylase domain VPUCM_2513 SM00354 helix_turn _helix lactose operon repressor VPUCM_2516 SM00382 ATPases associated with a variety of cellular activities VPUCM_2516 SM00930 VPUCM_2516 VPUCM_2522 SM00028 Tetratricopeptide repeats VPUCM_2523 SM00267 diguanylate cyclase VPUCM_2525 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs VPUCM_2525 SM00475 5'-3' exonuclease VPUCM_2526 SM00477 DNA/RNA non-specific endonuclease VPUCM_2526 SM00892 DNA/RNA non-specific endonuclease VPUCM_2531 SM00981 VPUCM_2531 VPUCM_2536 SM00861 Transketolase, pyrimidine binding domain VPUCM_2546 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase VPUCM_2556 SM01211 VPUCM_2556 VPUCM_2557 SM00062 Bacterial periplasmic substrate-binding proteins VPUCM_2568 SM00091 PAS domain VPUCM_2568 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VPUCM_2568 SM00387 Histidine kinase-like ATPases VPUCM_2568 SM00388 His Kinase A (phosphoacceptor) domain VPUCM_2568 SM00448 cheY-homologous receiver domain VPUCM_2572 SM00382 ATPases associated with a variety of cellular activities VPUCM_2573 SM00382 ATPases associated with a variety of cellular activities VPUCM_2577 SM01068 Putative carbohydrate binding domain VPUCM_2579 SM00382 ATPases associated with a variety of cellular activities VPUCM_2583 SM00938 Nitrogen regulatory protein P-II VPUCM_2588 SM00487 DEAD-like helicases superfamily VPUCM_2588 SM00490 helicase superfamily c-terminal domain VPUCM_2588 SM00847 Helicase associated domain (HA2) Add an annotation VPUCM_2598 SM00382 ATPases associated with a variety of cellular activities VPUCM_2600 SM00947 Carbonic anhydrase VPUCM_2606 SM00345 helix_turn_helix gluconate operon transcriptional repressor VPUCM_2606 SM00895 VPUCM_2606 VPUCM_2607 SM00644 VPUCM_2607 VPUCM_2620 SM00382 ATPases associated with a variety of cellular activities VPUCM_2620 SM00962 SRP54-type protein, GTPase domain VPUCM_2620 SM00963 SRP54-type protein, helical bundle domain VPUCM_2622 SM01091 Transporter associated domain VPUCM_2628 SM00829 Enoylreductase VPUCM_2635 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain VPUCM_2637 SM00382 ATPases associated with a variety of cellular activities VPUCM_2639 SM00533 DNA-binding domain of DNA mismatch repair MUTS family VPUCM_2639 SM00534 ATPase domain of DNA mismatch repair MUTS family VPUCM_2641 SM00257 Lysin motif VPUCM_2648 SM01192 VPUCM_2648 VPUCM_2648 SM01193 VPUCM_2648 VPUCM_2651 SM00954 Region found in RelA / SpoT proteins VPUCM_2653 SM00073 Histidine Phosphotransfer domain VPUCM_2653 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VPUCM_2653 SM00387 Histidine kinase-like ATPases VPUCM_2653 SM00388 His Kinase A (phosphoacceptor) domain VPUCM_2653 SM00448 cheY-homologous receiver domain VPUCM_2658 SM00358 Double-stranded RNA binding motif VPUCM_2658 SM00535 Ribonuclease III family VPUCM_2660 SM00838 Elongation factor G C-terminus VPUCM_2684 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VPUCM_2687 SM00861 Transketolase, pyrimidine binding domain VPUCM_2690 SM00731 SprT homologues. VPUCM_2695 SM00732 Likely ribonuclease with RNase H fold. VPUCM_2701 SM01152 VPUCM_2701 VPUCM_2704 SM00729 Elongator protein 3, MiaB family, Radical SAM VPUCM_2708 SM00478 endonuclease III VPUCM_2708 SM00525 VPUCM_2708 VPUCM_2711 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VPUCM_2711 SM01049 VPUCM_2711 VPUCM_2715 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VPUCM_2716 SM00354 helix_turn _helix lactose operon repressor VPUCM_2722 SM00495 Chitin-binding domain type 3 VPUCM_2740 SM00347 helix_turn_helix multiple antibiotic resistance protein VPUCM_2757 SM00563 Phosphate acyltransferases VPUCM_2764 SM00382 ATPases associated with a variety of cellular activities VPUCM_2766 SM00116 Domain in cystathionine beta-synthase and other proteins. VPUCM_2769 SM00382 ATPases associated with a variety of cellular activities VPUCM_2775 SM00116 Domain in cystathionine beta-synthase and other proteins. VPUCM_2775 SM00924 MgtE intracellular N domain VPUCM_2782 SM00487 DEAD-like helicases superfamily VPUCM_2782 SM00490 helicase superfamily c-terminal domain VPUCM_2788 SM00316 Ribosomal protein S1-like RNA-binding domain VPUCM_2803 SM00382 ATPases associated with a variety of cellular activities VPUCM_2804 SM00028 Tetratricopeptide repeats VPUCM_2807 SM00965 Secretin and TonB N terminus short domain VPUCM_2811 SM00052 Putative diguanylate phosphodiesterase VPUCM_2811 SM00267 diguanylate cyclase VPUCM_2813 SM00421 helix_turn_helix, Lux Regulon VPUCM_2821 SM01018 B12 binding domain VPUCM_2837 SM01005 Alanine racemase, C-terminal domain VPUCM_2849 SM00965 Secretin and TonB N terminus short domain VPUCM_2861 SM00859 Semialdehyde dehydrogenase, NAD binding domain VPUCM_2869 SM00919 Malic enzyme, NAD binding domain VPUCM_2869 SM01274 VPUCM_2869 VPUCM_2872 SM00838 Elongation factor G C-terminus VPUCM_2872 SM00889 Elongation factor G, domain IV VPUCM_2880 SM00320 WD40 repeats VPUCM_2887 SM00382 ATPases associated with a variety of cellular activities VPUCM_2892 SM00100 Cyclic nucleotide-monophosphate binding domain VPUCM_2892 SM00419 helix_turn_helix, cAMP Regulatory protein VPUCM_2893 SM01150 VPUCM_2893 VPUCM_2903 SM00967 RNA 2'-O ribose methyltransferase substrate binding VPUCM_2904 SM00316 Ribosomal protein S1-like RNA-binding domain VPUCM_2904 SM00357 Cold shock protein domain VPUCM_2904 SM00955 VPUCM_2904 VPUCM_2907 SM00671 Sel1-like repeats. VPUCM_2908 SM00788 Adenylosuccinate synthetase VPUCM_2910 SM00244 prohibitin homologues VPUCM_2911 SM00244 prohibitin homologues VPUCM_2915 SM00853 MutL C terminal dimerisation domain VPUCM_2915 SM01340 VPUCM_2915 VPUCM_2916 SM00257 Lysin motif VPUCM_2916 SM00646 VPUCM_2916 VPUCM_2919 SM00479 VPUCM_2919 VPUCM_2924 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VPUCM_2924 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VPUCM_2928 SM00450 Rhodanese Homology Domain VPUCM_2931 SM00971 Serine acetyltransferase, N-terminal VPUCM_2943 SM00841 Elongation factor P, C-terminal VPUCM_2943 SM01185 VPUCM_2943 VPUCM_2947 SM01005 Alanine racemase, C-terminal domain VPUCM_2951 SM00883 Chaperonin 10 Kd subunit VPUCM_2956 SM00448 cheY-homologous receiver domain VPUCM_2956 SM00862 Transcriptional regulatory protein, C terminal VPUCM_2957 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VPUCM_2957 SM00387 Histidine kinase-like ATPases VPUCM_2957 SM00388 His Kinase A (phosphoacceptor) domain VPUCM_2964 SM00421 helix_turn_helix, Lux Regulon VPUCM_2964 SM00448 cheY-homologous receiver domain VPUCM_2965 SM01091 Transporter associated domain VPUCM_2972 SM00387 Histidine kinase-like ATPases VPUCM_2972 SM00388 His Kinase A (phosphoacceptor) domain VPUCM_2972 SM00448 cheY-homologous receiver domain VPUCM_2975 SM00479 VPUCM_2975 VPUCM_2979 SM00878 Biotin carboxylase C-terminal domain VPUCM_2984 SM00382 ATPases associated with a variety of cellular activities VPUCM_2985 SM00267 diguanylate cyclase VPUCM_2989 SM00862 Transcriptional regulatory protein, C terminal VPUCM_2991 SM00422 helix_turn_helix, mercury resistance VPUCM_2993 SM00798 AICARFT/IMPCHase bienzyme VPUCM_2993 SM00851 MGS-like domain VPUCM_2994 SM01209 VPUCM_2994 VPUCM_2994 SM01210 VPUCM_2994 VPUCM_2996 SM00411 bacterial (prokaryotic) histone like domain VPUCM_3000 SM00986 Uracil DNA glycosylase superfamily VPUCM_3000 SM00987 UreE urease accessory protein, C-terminal domain VPUCM_3006 SM00663 RNA polymerase I subunit A N-terminus VPUCM_3011 SM00649 Ribosomal protein L11/L12 VPUCM_3012 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. VPUCM_3012 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. VPUCM_3019 SM00155 Phospholipase D. Active site motifs. VPUCM_3021 SM00360 RNA recognition motif VPUCM_3032 SM00563 Phosphate acyltransferases VPUCM_3037 SM00450 Rhodanese Homology Domain VPUCM_3040 SM00382 ATPases associated with a variety of cellular activities VPUCM_3041 SM00382 ATPases associated with a variety of cellular activities VPUCM_3041 SM00962 SRP54-type protein, GTPase domain VPUCM_3041 SM00963 SRP54-type protein, helical bundle domain VPUCM_3054 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VPUCM_3055 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VPUCM_3056 SM00052 Putative diguanylate phosphodiesterase VPUCM_3062 SM01144 VPUCM_3062 VPUCM_3063 SM00052 Putative diguanylate phosphodiesterase VPUCM_3063 SM00897 FIST N domain VPUCM_3063 SM01204 VPUCM_3063 VPUCM_3070 SM01219 VPUCM_3070 VPUCM_3075 SM00028 Tetratricopeptide repeats VPUCM_3081 SM00357 Cold shock protein domain VPUCM_3081 SM00382 ATPases associated with a variety of cellular activities VPUCM_3081 SM00959 Rho termination factor, N-terminal domain VPUCM_3083 SM00487 DEAD-like helicases superfamily VPUCM_3083 SM00490 helicase superfamily c-terminal domain VPUCM_3087 SM00341 Helicase and RNase D C-terminal VPUCM_3087 SM00487 DEAD-like helicases superfamily VPUCM_3087 SM00490 helicase superfamily c-terminal domain VPUCM_3087 SM00956 VPUCM_3087 VPUCM_3089 SM00342 helix_turn_helix, arabinose operon control protein VPUCM_3101 SM00876 Biotin and Thiamin Synthesis associated domain VPUCM_3116 SM01001 AIR carboxylase VPUCM_3122 SM00257 Lysin motif VPUCM_3137 SM00563 Phosphate acyltransferases VPUCM_3139 SM00382 ATPases associated with a variety of cellular activities VPUCM_3147 SM00062 Bacterial periplasmic substrate-binding proteins VPUCM_3151 SM00382 ATPases associated with a variety of cellular activities VPUCM_3159 SM00470 ParB-like nuclease domain VPUCM_3162 SM01228 VPUCM_3162 VPUCM_p0009 SM00966 SpoVT / AbrB like domain VPUCM_p0050 SM00052 Putative diguanylate phosphodiesterase VPUCM_p0053 SM00470 ParB-like nuclease domain VPUCM_p0057 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain VPUCM_p0057 SM00437 Bacterial DNA topoisomerase I DNA-binding domain VPUCM_p0057 SM00493 VPUCM_p0057