locus-tag class description JHS79_00005 PF00308 Bacterial dnaA protein JHS79_00005 PF08299 Bacterial dnaA protein helix-turn-helix JHS79_00005 PF11638 DnaA N-terminal domain JHS79_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain JHS79_00010 PF02767 DNA polymerase III beta subunit, central domain JHS79_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain JHS79_00015 PF02463 RecF/RecN/SMC N terminal domain JHS79_00020 PF01751 Toprim domain JHS79_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_00020 PF00986 DNA gyrase B subunit, carboxyl terminus JHS79_00020 PF00204 DNA gyrase B JHS79_00020 PF18053 DNA gyrase B subunit insert domain JHS79_00030 PF00011 Hsp20/alpha crystallin family JHS79_00035 PF00155 Aminotransferase class I and II JHS79_00040 PF00128 Alpha amylase, catalytic domain JHS79_00045 PF05746 DALR anticodon binding domain JHS79_00045 PF02092 Glycyl-tRNA synthetase beta subunit JHS79_00050 PF02091 Glycyl-tRNA synthetase alpha subunit JHS79_00055 PF01169 Uncharacterized protein family UPF0016 JHS79_00065 PF01206 Sulfurtransferase TusA JHS79_00075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_00075 PF03466 LysR substrate binding domain JHS79_00080 PF08240 Alcohol dehydrogenase GroES-like domain JHS79_00080 PF00107 Zinc-binding dehydrogenase JHS79_00085 PF02803 Thiolase, C-terminal domain JHS79_00085 PF00108 Thiolase, N-terminal domain JHS79_00090 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JHS79_00090 PF00378 Enoyl-CoA hydratase/isomerase JHS79_00090 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JHS79_00095 PF09186 Domain of unknown function (DUF1949) JHS79_00095 PF01205 Uncharacterized protein family UPF0029 JHS79_00100 PF02386 Cation transport protein JHS79_00105 PF12724 Flavodoxin domain JHS79_00140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_00140 PF03466 LysR substrate binding domain JHS79_00145 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain JHS79_00145 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain JHS79_00150 PF04380 Membrane fusogenic activity JHS79_00155 PF00873 AcrB/AcrD/AcrF family JHS79_00160 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS79_00165 PF16295 Tetracyclin repressor-like, C-terminal domain JHS79_00165 PF00440 Bacterial regulatory proteins, tetR family JHS79_00170 PF00580 UvrD/REP helicase N-terminal domain JHS79_00170 PF13361 UvrD-like helicase C-terminal domain JHS79_00175 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JHS79_00205 PF13419 Haloacid dehalogenase-like hydrolase JHS79_00210 PF00005 ABC transporter JHS79_00210 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS79_00215 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JHS79_00220 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_00225 PF12911 N-terminal TM domain of oligopeptide transport permease C JHS79_00225 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_00255 PF00069 Protein kinase domain JHS79_00260 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JHS79_00260 PF00356 Bacterial regulatory proteins, lacI family JHS79_00265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_00265 PF03466 LysR substrate binding domain JHS79_00270 PF00893 Small Multidrug Resistance protein JHS79_00275 PF00893 Small Multidrug Resistance protein JHS79_00280 PF00920 Dehydratase family JHS79_00285 PF01202 Shikimate kinase JHS79_00290 PF02447 GntP family permease JHS79_00295 PF01081 KDPG and KHG aldolase JHS79_00300 PF01048 Phosphorylase superfamily JHS79_00305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_00305 PF03466 LysR substrate binding domain JHS79_00310 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS79_00310 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JHS79_00315 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ JHS79_00320 PF01432 Peptidase family M3 JHS79_00325 PF01037 Lrp/AsnC ligand binding domain JHS79_00330 PF08448 PAS fold JHS79_00330 PF00990 Diguanylate cyclase, GGDEF domain JHS79_00330 PF00563 EAL domain JHS79_00335 PF04445 Putative SAM-dependent methyltransferase JHS79_00345 PF00892 EamA-like transporter family JHS79_00350 PF00582 Universal stress protein family JHS79_00355 PF00210 Ferritin-like domain JHS79_00360 PF10625 Universal stress protein B (UspB) JHS79_00370 PF01590 GAF domain JHS79_00370 PF02954 Bacterial regulatory protein, Fis family JHS79_00370 PF00158 Sigma-54 interaction domain JHS79_00375 PF04972 BON domain JHS79_00425 PF01594 AI-2E family transporter JHS79_00430 PF00563 EAL domain JHS79_00430 PF00990 Diguanylate cyclase, GGDEF domain JHS79_00430 PF03707 Bacterial signalling protein N terminal repeat JHS79_00440 PF02646 RmuC family JHS79_00445 PF01209 ubiE/COQ5 methyltransferase family JHS79_00450 PF02036 SCP-2 sterol transfer family JHS79_00455 PF03109 ABC1 family JHS79_00460 PF02416 mttA/Hcf106 family JHS79_00465 PF02416 mttA/Hcf106 family JHS79_00470 PF00902 Sec-independent protein translocase protein (TatC) JHS79_00475 PF01026 TatD related DNase JHS79_00480 PF00490 Delta-aminolevulinic acid dehydratase JHS79_00495 PF01612 3'-5' exonuclease JHS79_00495 PF01367 5'-3' exonuclease, C-terminal SAM fold JHS79_00495 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JHS79_00495 PF00476 DNA polymerase family A JHS79_00500 PF01926 50S ribosome-binding GTPase JHS79_00505 PF00034 Cytochrome c JHS79_00520 PF04220 Der GTPase activator (YihI) JHS79_00525 PF10675 Protein of unknown function (DUF2489) JHS79_00530 PF06969 HemN C-terminal domain JHS79_00530 PF04055 Radical SAM superfamily JHS79_00535 PF00962 Adenosine/AMP deaminase JHS79_00540 PF03707 Bacterial signalling protein N terminal repeat JHS79_00540 PF00990 Diguanylate cyclase, GGDEF domain JHS79_00540 PF00563 EAL domain JHS79_00545 PF02954 Bacterial regulatory protein, Fis family JHS79_00545 PF00072 Response regulator receiver domain JHS79_00545 PF00158 Sigma-54 interaction domain JHS79_00550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_00550 PF00512 His Kinase A (phospho-acceptor) domain JHS79_00550 PF00989 PAS fold JHS79_00560 PF03951 Glutamine synthetase, beta-Grasp domain JHS79_00560 PF00120 Glutamine synthetase, catalytic domain JHS79_00565 PF03144 Elongation factor Tu domain 2 JHS79_00565 PF00009 Elongation factor Tu GTP binding domain JHS79_00565 PF00679 Elongation factor G C-terminus JHS79_00580 PF03631 Virulence factor BrkB JHS79_00585 PF02580 D-Tyr-tRNA(Tyr) deacylase JHS79_00590 PF00583 Acetyltransferase (GNAT) family JHS79_00590 PF09500 Putative thioesterase (yiiD_Cterm) JHS79_00600 PF01293 Phosphoenolpyruvate carboxykinase JHS79_00605 PF01430 Hsp33 protein JHS79_00610 PF01479 S4 domain JHS79_00615 PF11356 Type II secretion system protein C JHS79_00620 PF00263 Bacterial type II and III secretion system protein JHS79_00620 PF03958 Bacterial type II/III secretion system short domain JHS79_00625 PF00437 Type II/IV secretion system protein JHS79_00630 PF00482 Type II secretion system (T2SS), protein F JHS79_00635 PF07963 Prokaryotic N-terminal methylation motif JHS79_00635 PF08334 Type II secretion system (T2SS), protein G JHS79_00640 PF12019 Type II transport protein GspH JHS79_00645 PF07963 Prokaryotic N-terminal methylation motif JHS79_00645 PF02501 Type II secretion system (T2SS), protein I JHS79_00650 PF07963 Prokaryotic N-terminal methylation motif JHS79_00650 PF11612 Type II secretion system (T2SS), protein J JHS79_00655 PF03934 Type II secretion system (T2SS), protein K JHS79_00660 PF12693 GspL periplasmic domain JHS79_00660 PF05134 Type II secretion system (T2SS), protein L JHS79_00665 PF04612 Type II secretion system (T2SS), protein M JHS79_00670 PF01203 Type II secretion system (T2SS), protein N JHS79_00675 PF00459 Inositol monophosphatase family JHS79_00680 PF00293 NUDIX domain JHS79_00685 PF01106 NifU-like domain JHS79_00685 PF01521 Iron-sulphur cluster biosynthesis JHS79_00690 PF00156 Phosphoribosyl transferase domain JHS79_00695 PF00561 alpha/beta hydrolase fold JHS79_00705 PF16921 Tex protein YqgF-like domain JHS79_00705 PF17674 HHH domain JHS79_00705 PF00575 S1 RNA binding domain JHS79_00705 PF09371 Tex-like protein N-terminal domain JHS79_00715 PF01272 Transcription elongation factor, GreA/GreB, C-term JHS79_00715 PF03449 Transcription elongation factor, N-terminal JHS79_00725 PF00072 Response regulator receiver domain JHS79_00725 PF00486 Transcriptional regulatory protein, C terminal JHS79_00730 PF00672 HAMP domain JHS79_00730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_00730 PF00512 His Kinase A (phospho-acceptor) domain JHS79_00735 PF00860 Permease family JHS79_00740 PF17191 RecG wedge domain JHS79_00740 PF00271 Helicase conserved C-terminal domain JHS79_00740 PF00270 DEAD/DEAH box helicase JHS79_00745 PF12105 SpoU, rRNA methylase, C-terminal JHS79_00745 PF00588 SpoU rRNA Methylase family JHS79_00750 PF02824 TGS domain JHS79_00750 PF04607 Region found in RelA / SpoT proteins JHS79_00750 PF13291 ACT domain JHS79_00755 PF01192 RNA polymerase Rpb6 JHS79_00760 PF00625 Guanylate kinase JHS79_00775 PF02472 Biopolymer transport protein ExbD/TolR JHS79_00780 PF01618 MotA/TolQ/ExbB proton channel family JHS79_00795 PF07715 TonB-dependent Receptor Plug Domain JHS79_00795 PF00593 TonB dependent receptor JHS79_00800 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_00805 PF12911 N-terminal TM domain of oligopeptide transport permease C JHS79_00805 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_00810 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JHS79_00815 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS79_00815 PF00005 ABC transporter JHS79_00820 PF00005 ABC transporter JHS79_00820 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS79_00830 PF03755 YicC-like family, N-terminal region JHS79_00830 PF08340 Domain of unknown function (DUF1732) JHS79_00835 PF03725 3' exoribonuclease family, domain 2 JHS79_00835 PF01138 3' exoribonuclease family, domain 1 JHS79_00840 PF00156 Phosphoribosyl transferase domain JHS79_00845 PF03279 Bacterial lipid A biosynthesis acyltransferase JHS79_00850 PF00440 Bacterial regulatory proteins, tetR family JHS79_00855 PF02441 Flavoprotein JHS79_00855 PF04127 DNA / pantothenate metabolism flavoprotein JHS79_00860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS79_00860 PF17200 Single Cache domain 2 JHS79_00860 PF00672 HAMP domain JHS79_00865 PF04002 RadC-like JAB domain JHS79_00870 PF00830 Ribosomal L28 family JHS79_00875 PF00471 Ribosomal protein L33 JHS79_00885 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JHS79_00885 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JHS79_00885 PF06827 Zinc finger found in FPG and IleRS JHS79_00895 PF01467 Cytidylyltransferase-like JHS79_00900 PF00534 Glycosyl transferases group 1 JHS79_00905 PF00535 Glycosyl transferase family 2 JHS79_00910 PF01075 Glycosyltransferase family 9 (heptosyltransferase) JHS79_00915 PF01219 Prokaryotic diacylglycerol kinase JHS79_00925 PF11893 Domain of unknown function (DUF3413) JHS79_00925 PF00884 Sulfatase JHS79_00940 PF00132 Bacterial transferase hexapeptide (six repeats) JHS79_00945 PF02719 Polysaccharide biosynthesis protein JHS79_00950 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JHS79_00955 PF02350 UDP-N-acetylglucosamine 2-epimerase JHS79_00960 PF03102 NeuB family JHS79_00960 PF08666 SAF domain JHS79_00970 PF00483 Nucleotidyl transferase JHS79_00975 PF02348 Cytidylyltransferase JHS79_00985 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) JHS79_00990 PF01075 Glycosyltransferase family 9 (heptosyltransferase) JHS79_00995 PF03279 Bacterial lipid A biosynthesis acyltransferase JHS79_01000 PF01370 NAD dependent epimerase/dehydratase family JHS79_01005 PF06082 Exopolysaccharide biosynthesis protein YbjH JHS79_01015 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF JHS79_01025 PF00953 Glycosyl transferase family 4 JHS79_01030 PF00009 Elongation factor Tu GTP binding domain JHS79_01045 PF01507 Phosphoadenosine phosphosulfate reductase family JHS79_01055 PF08334 Type II secretion system (T2SS), protein G JHS79_01055 PF07963 Prokaryotic N-terminal methylation motif JHS79_01060 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JHS79_01060 PF00437 Type II/IV secretion system protein JHS79_01065 PF00482 Type II secretion system (T2SS), protein F JHS79_01070 PF08334 Type II secretion system (T2SS), protein G JHS79_01070 PF07963 Prokaryotic N-terminal methylation motif JHS79_01085 PF03934 Type II secretion system (T2SS), protein K JHS79_01105 PF00263 Bacterial type II and III secretion system protein JHS79_01105 PF03958 Bacterial type II/III secretion system short domain JHS79_01115 PF00953 Glycosyl transferase family 4 JHS79_01125 PF02563 Polysaccharide biosynthesis/export protein JHS79_01125 PF10531 SLBB domain JHS79_01130 PF01061 ABC-2 type transporter JHS79_01135 PF00005 ABC transporter JHS79_01145 PF00483 Nucleotidyl transferase JHS79_01150 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase JHS79_01155 PF04321 RmlD substrate binding domain JHS79_01160 PF16363 GDP-mannose 4,6 dehydratase JHS79_01185 PF00793 DAHP synthetase I family JHS79_01190 PF02348 Cytidylyltransferase JHS79_01195 PF01380 SIS domain JHS79_01195 PF00571 CBS domain JHS79_01200 PF00535 Glycosyl transferase family 2 JHS79_01230 PF02080 TrkA-C domain JHS79_01230 PF03600 Citrate transporter JHS79_01240 PF00535 Glycosyl transferase family 2 JHS79_01255 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JHS79_01255 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JHS79_01255 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JHS79_01260 PF00483 Nucleotidyl transferase JHS79_01265 PF00121 Triosephosphate isomerase JHS79_01285 PF00455 DeoR C terminal sensor domain JHS79_01285 PF08220 DeoR-like helix-turn-helix domain JHS79_01290 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded JHS79_01295 PF06005 Cell division protein ZapB JHS79_01300 PF03737 Aldolase/RraA JHS79_01305 PF01040 UbiA prenyltransferase family JHS79_01310 PF00004 ATPase family associated with various cellular activities (AAA) JHS79_01310 PF07724 AAA domain (Cdc48 subfamily) JHS79_01315 PF00227 Proteasome subunit JHS79_01325 PF00356 Bacterial regulatory proteins, lacI family JHS79_01330 PF17764 3′ DNA-binding domain (3′BD) JHS79_01330 PF00270 DEAD/DEAH box helicase JHS79_01330 PF18319 PriA DNA helicase Cys-rich region (CRR) domain JHS79_01330 PF18074 Primosomal protein N C-terminal domain JHS79_01330 PF00271 Helicase conserved C-terminal domain JHS79_01335 PF01197 Ribosomal protein L31 JHS79_01340 PF00338 Ribosomal protein S10p/S20e JHS79_01345 PF00297 Ribosomal protein L3 JHS79_01350 PF00573 Ribosomal protein L4/L1 family JHS79_01355 PF00276 Ribosomal protein L23 JHS79_01360 PF00181 Ribosomal Proteins L2, RNA binding domain JHS79_01360 PF03947 Ribosomal Proteins L2, C-terminal domain JHS79_01365 PF00203 Ribosomal protein S19 JHS79_01370 PF00237 Ribosomal protein L22p/L17e JHS79_01375 PF00189 Ribosomal protein S3, C-terminal domain JHS79_01375 PF07650 KH domain JHS79_01380 PF00252 Ribosomal protein L16p/L10e JHS79_01385 PF00831 Ribosomal L29 protein JHS79_01390 PF00366 Ribosomal protein S17 JHS79_01395 PF00238 Ribosomal protein L14p/L23e JHS79_01400 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JHS79_01400 PF00467 KOW motif JHS79_01405 PF00281 Ribosomal protein L5 JHS79_01405 PF00673 ribosomal L5P family C-terminus JHS79_01410 PF00253 Ribosomal protein S14p/S29e JHS79_01415 PF00410 Ribosomal protein S8 JHS79_01420 PF00347 Ribosomal protein L6 JHS79_01425 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JHS79_01430 PF00333 Ribosomal protein S5, N-terminal domain JHS79_01430 PF03719 Ribosomal protein S5, C-terminal domain JHS79_01435 PF00327 Ribosomal protein L30p/L7e JHS79_01440 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A JHS79_01445 PF00344 SecY translocase JHS79_01450 PF00444 Ribosomal protein L36 JHS79_01455 PF00416 Ribosomal protein S13/S18 JHS79_01460 PF00411 Ribosomal protein S11 JHS79_01465 PF01479 S4 domain JHS79_01465 PF00163 Ribosomal protein S4/S9 N-terminal domain JHS79_01470 PF01000 RNA polymerase Rpb3/RpoA insert domain JHS79_01470 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain JHS79_01470 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain JHS79_01475 PF01196 Ribosomal protein L17 JHS79_01485 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JHS79_01485 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JHS79_01495 PF13673 Acetyltransferase (GNAT) domain JHS79_01500 PF00270 DEAD/DEAH box helicase JHS79_01500 PF00271 Helicase conserved C-terminal domain JHS79_01500 PF03880 DbpA RNA binding domain JHS79_01510 PF02872 5'-nucleotidase, C-terminal domain JHS79_01510 PF00149 Calcineurin-like phosphoesterase JHS79_01515 PF10414 Sirohaem synthase dimerisation region JHS79_01515 PF14824 Sirohaem biosynthesis protein central JHS79_01515 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JHS79_01520 PF01507 Phosphoadenosine phosphosulfate reductase family JHS79_01525 PF00009 Elongation factor Tu GTP binding domain JHS79_01530 PF02080 TrkA-C domain JHS79_01530 PF03600 Citrate transporter JHS79_01555 PF00005 ABC transporter JHS79_01565 PF10795 Protein of unknown function (DUF2607) JHS79_01570 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) JHS79_01575 PF06526 Protein of unknown function (DUF1107) JHS79_01580 PF01625 Peptide methionine sulfoxide reductase JHS79_01585 PF01103 Surface antigen JHS79_01585 PF17243 POTRA domain TamA domain 1 JHS79_01590 PF04357 TamB, inner membrane protein subunit of TAM complex JHS79_01595 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like JHS79_01605 PF00719 Inorganic pyrophosphatase JHS79_01610 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain JHS79_01615 PF08245 Mur ligase middle domain JHS79_01615 PF01225 Mur ligase family, catalytic domain JHS79_01615 PF02875 Mur ligase family, glutamate ligase domain JHS79_01620 PF02441 Flavoprotein JHS79_01630 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_01635 PF00005 ABC transporter JHS79_01650 PF16868 NMT1-like family JHS79_01655 PF01316 Arginine repressor, DNA binding domain JHS79_01655 PF02863 Arginine repressor, C-terminal domain JHS79_01660 PF00056 lactate/malate dehydrogenase, NAD binding domain JHS79_01660 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JHS79_01670 PF00348 Polyprenyl synthetase JHS79_01675 PF00829 Ribosomal prokaryotic L21 protein JHS79_01680 PF01016 Ribosomal L27 protein JHS79_01685 PF01926 50S ribosome-binding GTPase JHS79_01685 PF01018 GTP1/OBG JHS79_01690 PF06738 Putative threonine/serine exporter JHS79_01695 PF12821 Threonine/Serine exporter, ThrE JHS79_01700 PF00186 Dihydrofolate reductase JHS79_01705 PF00149 Calcineurin-like phosphoesterase JHS79_01710 PF04379 ApaG domain JHS79_01715 PF00398 Ribosomal RNA adenine dimethylase JHS79_01720 PF04166 Pyridoxal phosphate biosynthetic protein PdxA JHS79_01725 PF09312 SurA N-terminal domain JHS79_01730 PF03968 OstA-like protein JHS79_01730 PF04453 LPS transport system D JHS79_01735 PF05099 Tellurite resistance protein TerB JHS79_01735 PF00226 DnaJ domain JHS79_01745 PF00694 Aconitase C-terminal domain JHS79_01750 PF00330 Aconitase family (aconitate hydratase) JHS79_01755 PF00180 Isocitrate/isopropylmalate dehydrogenase JHS79_01760 PF08502 LeuA allosteric (dimerisation) domain JHS79_01760 PF00682 HMGL-like JHS79_01770 PF01569 PAP2 superfamily JHS79_01780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_01780 PF03466 LysR substrate binding domain JHS79_01785 PF00501 AMP-binding enzyme JHS79_01790 PF00205 Thiamine pyrophosphate enzyme, central domain JHS79_01790 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JHS79_01790 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JHS79_01795 PF10369 Small subunit of acetolactate synthase JHS79_01800 PF00990 Diguanylate cyclase, GGDEF domain JHS79_01810 PF02887 Pyruvate kinase, alpha/beta domain JHS79_01810 PF00224 Pyruvate kinase, barrel domain JHS79_01815 PF00455 DeoR C terminal sensor domain JHS79_01815 PF08220 DeoR-like helix-turn-helix domain JHS79_01820 PF01380 SIS domain JHS79_01830 PF00072 Response regulator receiver domain JHS79_01830 PF00486 Transcriptional regulatory protein, C terminal JHS79_01835 PF00672 HAMP domain JHS79_01835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_01835 PF00512 His Kinase A (phospho-acceptor) domain JHS79_01840 PF13419 Haloacid dehalogenase-like hydrolase JHS79_01845 PF05068 Mannitol repressor JHS79_01850 PF08125 Mannitol dehydrogenase C-terminal domain JHS79_01850 PF01232 Mannitol dehydrogenase Rossmann domain JHS79_01855 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JHS79_01855 PF02378 Phosphotransferase system, EIIC JHS79_01855 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JHS79_01885 PF03180 NLPA lipoprotein JHS79_01960 PF18821 Large polyvalent protein-associated domain 7 JHS79_01960 PF03432 Relaxase/Mobilisation nuclease domain JHS79_02005 PF00589 Phage integrase family JHS79_02015 PF04539 Sigma-70 region 3 JHS79_02015 PF04545 Sigma-70, region 4 JHS79_02015 PF04542 Sigma-70 region 2 JHS79_02015 PF00140 Sigma-70 factor, region 1.2 JHS79_02015 PF04546 Sigma-70, non-essential region JHS79_02015 PF03979 Sigma-70 factor, region 1.1 JHS79_02020 PF08278 DNA primase DnaG DnaB-binding JHS79_02020 PF08275 DNA primase catalytic core, N-terminal domain JHS79_02020 PF01807 CHC2 zinc finger JHS79_02020 PF10410 DnaB-helicase binding domain of primase JHS79_02025 PF09424 Yqey-like protein JHS79_02030 PF01165 Ribosomal protein S21 JHS79_02035 PF00814 Glycoprotease family JHS79_02040 PF12697 Alpha/beta hydrolase family JHS79_02045 PF02660 Glycerol-3-phosphate acyltransferase JHS79_02050 PF02152 Dihydroneopterin aldolase JHS79_02055 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JHS79_02060 PF02673 Bacitracin resistance protein BacA JHS79_02065 PF01966 HD domain JHS79_02065 PF01743 Poly A polymerase head domain JHS79_02065 PF12627 Probable RNA and SrmB- binding site of polymerase A JHS79_02070 PF01471 Putative peptidoglycan binding domain JHS79_02070 PF13401 AAA domain JHS79_02080 PF08239 Bacterial SH3 domain JHS79_02085 PF01384 Phosphate transporter family JHS79_02090 PF01865 Protein of unknown function DUF47 JHS79_02095 PF01928 CYTH domain JHS79_02105 PF00672 HAMP domain JHS79_02105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS79_02110 PF08335 GlnD PII-uridylyltransferase JHS79_02110 PF03710 Glutamate-ammonia ligase adenylyltransferase JHS79_02115 PF01467 Cytidylyltransferase-like JHS79_02115 PF00294 pfkB family carbohydrate kinase JHS79_02120 PF02321 Outer membrane efflux protein JHS79_02125 PF00293 NUDIX domain JHS79_02130 PF06853 Protein of unknown function (DUF1249) JHS79_02135 PF00149 Calcineurin-like phosphoesterase JHS79_02140 PF05728 Uncharacterised protein family (UPF0227) JHS79_02145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_02145 PF01751 Toprim domain JHS79_02145 PF00986 DNA gyrase B subunit, carboxyl terminus JHS79_02145 PF00204 DNA gyrase B JHS79_02150 PF00521 DNA gyrase/topoisomerase IV, subunit A JHS79_02150 PF03989 DNA gyrase C-terminal domain, beta-propeller JHS79_02155 PF13180 PDZ domain JHS79_02160 PF00595 PDZ domain JHS79_02165 PF06295 Protein of unknown function (DUF1043) JHS79_02170 PF03969 AFG1-like ATPase JHS79_02175 PF00572 Ribosomal protein L13 JHS79_02180 PF00380 Ribosomal protein S9/S16 JHS79_02185 PF00355 Rieske [2Fe-2S] domain JHS79_02185 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal JHS79_02190 PF00032 Cytochrome b(C-terminal)/b6/petD JHS79_02190 PF00033 Cytochrome b/b6/petB JHS79_02195 PF02167 Cytochrome C1 family JHS79_02200 PF00043 Glutathione S-transferase, C-terminal domain JHS79_02200 PF02798 Glutathione S-transferase, N-terminal domain JHS79_02205 PF04386 Stringent starvation protein B JHS79_02210 PF04972 BON domain JHS79_02215 PF13580 SIS domain JHS79_02220 PF02021 Uncharacterised protein family UPF0102 JHS79_02225 PF04348 LppC putative lipoprotein JHS79_02230 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JHS79_02240 PF01795 MraW methylase family JHS79_02245 PF04999 Cell division protein FtsL JHS79_02250 PF03717 Penicillin-binding Protein dimerisation domain JHS79_02250 PF00905 Penicillin binding protein transpeptidase domain JHS79_02255 PF02875 Mur ligase family, glutamate ligase domain JHS79_02255 PF08245 Mur ligase middle domain JHS79_02255 PF01225 Mur ligase family, catalytic domain JHS79_02260 PF01225 Mur ligase family, catalytic domain JHS79_02260 PF02875 Mur ligase family, glutamate ligase domain JHS79_02260 PF08245 Mur ligase middle domain JHS79_02265 PF00953 Glycosyl transferase family 4 JHS79_02265 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 JHS79_02270 PF02875 Mur ligase family, glutamate ligase domain JHS79_02270 PF08245 Mur ligase middle domain JHS79_02275 PF01098 Cell cycle protein JHS79_02280 PF04101 Glycosyltransferase family 28 C-terminal domain JHS79_02280 PF03033 Glycosyltransferase family 28 N-terminal domain JHS79_02285 PF01225 Mur ligase family, catalytic domain JHS79_02285 PF08245 Mur ligase middle domain JHS79_02285 PF02875 Mur ligase family, glutamate ligase domain JHS79_02290 PF08478 POTRA domain, FtsQ-type JHS79_02290 PF03799 Cell division protein FtsQ JHS79_02295 PF02491 SHS2 domain inserted in FTSA JHS79_02300 PF12327 FtsZ family, C-terminal domain JHS79_02300 PF00091 Tubulin/FtsZ family, GTPase domain JHS79_02305 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase JHS79_02315 PF02810 SEC-C motif JHS79_02315 PF07517 SecA DEAD-like domain JHS79_02315 PF01043 SecA preprotein cross-linking domain JHS79_02315 PF07516 SecA Wing and Scaffold domain JHS79_02320 PF00293 NUDIX domain JHS79_02325 PF01113 Dihydrodipicolinate reductase, N-terminus JHS79_02325 PF05173 Dihydrodipicolinate reductase, C-terminus JHS79_02330 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain JHS79_02330 PF00117 Glutamine amidotransferase class-I JHS79_02335 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain JHS79_02335 PF02142 MGS-like domain JHS79_02335 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JHS79_02350 PF01925 Sulfite exporter TauE/SafE JHS79_02365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_02365 PF03466 LysR substrate binding domain JHS79_02370 PF03458 UPF0126 domain JHS79_02375 PF01497 Periplasmic binding protein JHS79_02380 PF17113 Regulatory signalling modulator protein AmpE JHS79_02380 PF03186 CobD/Cbib protein JHS79_02385 PF01048 Phosphorylase superfamily JHS79_02395 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JHS79_02395 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS79_02400 PF01493 GXGXG motif JHS79_02400 PF04898 Glutamate synthase central domain JHS79_02400 PF00310 Glutamine amidotransferases class-II JHS79_02400 PF01645 Conserved region in glutamate synthase JHS79_02405 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JHS79_02405 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS79_02410 PF04898 Glutamate synthase central domain JHS79_02410 PF01645 Conserved region in glutamate synthase JHS79_02410 PF00310 Glutamine amidotransferases class-II JHS79_02410 PF01493 GXGXG motif JHS79_02415 PF04055 Radical SAM superfamily JHS79_02415 PF16199 Radical_SAM C-terminal domain JHS79_02420 PF01590 GAF domain JHS79_02420 PF00990 Diguanylate cyclase, GGDEF domain JHS79_02420 PF00360 Phytochrome region JHS79_02420 PF00563 EAL domain JHS79_02425 PF00989 PAS fold JHS79_02425 PF01627 Hpt domain JHS79_02425 PF00072 Response regulator receiver domain JHS79_02425 PF18415 Histidine kinase receptor ArcB trans-membrane domain JHS79_02425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_02425 PF00512 His Kinase A (phospho-acceptor) domain JHS79_02435 PF00072 Response regulator receiver domain JHS79_02435 PF00486 Transcriptional regulatory protein, C terminal JHS79_02445 PF03737 Aldolase/RraA JHS79_02455 PF03447 Homoserine dehydrogenase, NAD binding domain JHS79_02455 PF00696 Amino acid kinase family JHS79_02455 PF13840 ACT domain JHS79_02455 PF01842 ACT domain JHS79_02455 PF00742 Homoserine dehydrogenase JHS79_02460 PF08544 GHMP kinases C terminal JHS79_02460 PF00288 GHMP kinases N terminal domain JHS79_02465 PF00291 Pyridoxal-phosphate dependent enzyme JHS79_02465 PF14821 Threonine synthase N terminus JHS79_02470 PF01228 Glycine radical JHS79_02475 PF01261 Xylose isomerase-like TIM barrel JHS79_02480 PF03167 Uracil DNA glycosylase superfamily JHS79_02495 PF01235 Sodium:alanine symporter family JHS79_02500 PF03883 Peroxide stress protein YaaA JHS79_02505 PF00271 Helicase conserved C-terminal domain JHS79_02505 PF00270 DEAD/DEAH box helicase JHS79_02510 PF05175 Methyltransferase small domain JHS79_02515 PF05525 Branched-chain amino acid transport protein JHS79_02520 PF00258 Flavodoxin JHS79_02525 PF02899 Phage integrase, N-terminal SAM-like domain JHS79_02525 PF00589 Phage integrase family JHS79_02530 PF10411 Disulfide bond isomerase protein N-terminus JHS79_02530 PF13098 Thioredoxin-like domain JHS79_02535 PF01368 DHH family JHS79_02535 PF02272 DHHA1 domain JHS79_02535 PF17768 RecJ OB domain JHS79_02545 PF01336 OB-fold nucleic acid binding domain JHS79_02545 PF00152 tRNA synthetases class II (D, K and N) JHS79_02550 PF00072 Response regulator receiver domain JHS79_02550 PF00158 Sigma-54 interaction domain JHS79_02550 PF02954 Bacterial regulatory protein, Fis family JHS79_02560 PF00248 Aldo/keto reductase family JHS79_02570 PF02976 DNA mismatch repair enzyme MutH JHS79_02575 PF00293 NUDIX domain JHS79_02580 PF02896 PEP-utilising enzyme, TIM barrel domain JHS79_02580 PF01590 GAF domain JHS79_02580 PF05524 PEP-utilising enzyme, N-terminal JHS79_02580 PF00391 PEP-utilising enzyme, mobile domain JHS79_02585 PF01925 Sulfite exporter TauE/SafE JHS79_02590 PF01790 Prolipoprotein diacylglyceryl transferase JHS79_02595 PF00303 Thymidylate synthase JHS79_02605 PF02690 Na+/Pi-cotransporter JHS79_02610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_02610 PF03466 LysR substrate binding domain JHS79_02615 PF01022 Bacterial regulatory protein, arsR family JHS79_02620 PF01649 Ribosomal protein S20 JHS79_02625 PF03023 Lipid II flippase MurJ JHS79_02630 PF01687 Riboflavin kinase JHS79_02630 PF06574 FAD synthetase JHS79_02635 PF08264 Anticodon-binding domain of tRNA JHS79_02635 PF00133 tRNA synthetases class I (I, L, M and V) JHS79_02635 PF06827 Zinc finger found in FPG and IleRS JHS79_02640 PF01252 Signal peptidase (SPase) II JHS79_02645 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JHS79_02650 PF02401 LytB protein JHS79_02655 PF04397 LytTr DNA-binding domain JHS79_02655 PF00072 Response regulator receiver domain JHS79_02660 PF07694 5TMR of 5TMR-LYT JHS79_02660 PF06580 Histidine kinase JHS79_02665 PF02554 Carbon starvation protein CstA JHS79_02680 PF13580 SIS domain JHS79_02685 PF03702 Anhydro-N-acetylmuramic acid kinase JHS79_02690 PF00933 Glycosyl hydrolase family 3 N terminal domain JHS79_02695 PF00793 DAHP synthetase I family JHS79_02700 PF01817 Chorismate mutase type II JHS79_02700 PF02153 Prephenate dehydrogenase JHS79_02705 PF04225 Opacity-associated protein A LysM-like domain JHS79_02705 PF01551 Peptidase family M23 JHS79_02710 PF07238 PilZ domain JHS79_02715 PF00005 ABC transporter JHS79_02715 PF12848 ABC transporter JHS79_02720 PF01464 Transglycosylase SLT domain JHS79_02720 PF14718 Soluble lytic murein transglycosylase L domain JHS79_02725 PF01371 Trp repressor protein JHS79_02730 PF01931 Protein of unknown function DUF84 JHS79_02735 PF01817 Chorismate mutase type II JHS79_02735 PF00800 Prephenate dehydratase JHS79_02740 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JHS79_02745 PF01464 Transglycosylase SLT domain JHS79_02750 PF13525 Outer membrane lipoprotein JHS79_02755 PF00849 RNA pseudouridylate synthase JHS79_02755 PF01479 S4 domain JHS79_02760 PF02578 Multi-copper polyphenol oxidoreductase laccase JHS79_02765 PF07724 AAA domain (Cdc48 subfamily) JHS79_02765 PF17871 AAA lid domain JHS79_02765 PF02861 Clp amino terminal domain, pathogenicity island component JHS79_02765 PF10431 C-terminal, D2-small domain, of ClpB protein JHS79_02765 PF00004 ATPase family associated with various cellular activities (AAA) JHS79_02810 PF03411 Penicillin-insensitive murein endopeptidase JHS79_02820 PF00037 4Fe-4S binding domain JHS79_02825 PF01136 Peptidase family U32 JHS79_02825 PF16325 Peptidase family U32 C-terminal domain JHS79_02830 PF04381 Putative exonuclease, RdgC JHS79_02835 PF00072 Response regulator receiver domain JHS79_02835 PF00486 Transcriptional regulatory protein, C terminal JHS79_02840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_02840 PF00512 His Kinase A (phospho-acceptor) domain JHS79_02840 PF00989 PAS fold JHS79_02840 PF11808 Phosphate regulon sensor protein PhoR JHS79_02845 PF12849 PBP superfamily domain JHS79_02850 PF02541 Ppx/GppA phosphatase family JHS79_02855 PF13089 Polyphosphate kinase N-terminal domain JHS79_02855 PF13090 Polyphosphate kinase C-terminal domain 2 JHS79_02855 PF02503 Polyphosphate kinase middle domain JHS79_02855 PF17941 Polyphosphate kinase C-terminal domain 1 JHS79_02860 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_02865 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_02870 PF00005 ABC transporter JHS79_02875 PF01895 PhoU domain JHS79_02880 PF03976 Polyphosphate kinase 2 (PPK2) JHS79_02885 PF03932 CutC family JHS79_02890 PF10417 C-terminal domain of 1-Cys peroxiredoxin JHS79_02890 PF00578 AhpC/TSA family JHS79_02895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_02895 PF03466 LysR substrate binding domain JHS79_02900 PF01274 Malate synthase JHS79_02905 PF00463 Isocitrate lyase family JHS79_02910 PF00571 CBS domain JHS79_02920 PF02547 Queuosine biosynthesis protein JHS79_02925 PF01702 Queuine tRNA-ribosyltransferase JHS79_02930 PF02699 Preprotein translocase subunit JHS79_02935 PF07549 SecD/SecF GG Motif JHS79_02935 PF13721 SecD export protein N-terminal TM region JHS79_02935 PF02355 Protein export membrane protein JHS79_02940 PF07549 SecD/SecF GG Motif JHS79_02940 PF02355 Protein export membrane protein JHS79_02945 PF00459 Inositol monophosphatase family JHS79_02950 PF00588 SpoU rRNA Methylase family JHS79_02955 PF02082 Transcriptional regulator JHS79_02960 PF00266 Aminotransferase class-V JHS79_02965 PF01592 NifU-like N terminal domain JHS79_02970 PF01521 Iron-sulphur cluster biosynthesis JHS79_02975 PF00226 DnaJ domain JHS79_02975 PF07743 HSCB C-terminal oligomerisation domain JHS79_02980 PF00012 Hsp70 protein JHS79_02985 PF00111 2Fe-2S iron-sulfur cluster binding domain JHS79_02990 PF04384 Iron-sulphur cluster assembly JHS79_02995 PF12404 Peptidase JHS79_02995 PF00883 Cytosol aminopeptidase family, catalytic domain JHS79_03000 PF00334 Nucleoside diphosphate kinase JHS79_03005 PF04055 Radical SAM superfamily JHS79_03010 PF13464 Domain of unknown function (DUF4115) JHS79_03015 PF04551 GcpE protein JHS79_03020 PF03129 Anticodon binding domain JHS79_03020 PF13393 Histidyl-tRNA synthetase JHS79_03025 PF09976 Tetratricopeptide repeat-like domain JHS79_03030 PF13360 PQQ-like domain JHS79_03035 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JHS79_03035 PF01926 50S ribosome-binding GTPase JHS79_03050 PF02601 Exonuclease VII, large subunit JHS79_03050 PF13742 OB-fold nucleic acid binding domain JHS79_03055 PF00478 IMP dehydrogenase / GMP reductase domain JHS79_03055 PF00571 CBS domain JHS79_03060 PF00958 GMP synthase C terminal domain JHS79_03060 PF00117 Glutamine amidotransferase class-I JHS79_03060 PF02540 NAD synthase JHS79_03065 PF13356 Arm DNA-binding domain JHS79_03065 PF00589 Phage integrase family JHS79_03105 PF03432 Relaxase/Mobilisation nuclease domain JHS79_03105 PF18821 Large polyvalent protein-associated domain 7 JHS79_03150 PF07690 Major Facilitator Superfamily JHS79_03155 PF02909 Tetracyclin repressor-like, C-terminal domain JHS79_03155 PF00440 Bacterial regulatory proteins, tetR family JHS79_03160 PF13737 Transposase DDE domain JHS79_03165 PF00809 Pterin binding enzyme JHS79_03170 PF03553 Na+/H+ antiporter family JHS79_03175 PF06483 Chitinase C JHS79_03175 PF00704 Glycosyl hydrolases family 18 JHS79_03180 PF01184 GPR1/FUN34/yaaH family JHS79_03190 PF01235 Sodium:alanine symporter family JHS79_03195 PF01266 FAD dependent oxidoreductase JHS79_03200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_03200 PF03466 LysR substrate binding domain JHS79_03215 PF07969 Amidohydrolase family JHS79_03220 PF01053 Cys/Met metabolism PLP-dependent enzyme JHS79_03225 PF00202 Aminotransferase class-III JHS79_03245 PF00583 Acetyltransferase (GNAT) family JHS79_03245 PF00795 Carbon-nitrogen hydrolase JHS79_03250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_03250 PF03466 LysR substrate binding domain JHS79_03270 PF13737 Transposase DDE domain JHS79_03335 PF00239 Resolvase, N terminal domain JHS79_03335 PF02796 Helix-turn-helix domain of resolvase JHS79_03355 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) JHS79_03355 PF11867 Domain of unknown function (DUF3387) JHS79_03355 PF18766 SWI2/SNF2 ATPase JHS79_03365 PF02384 N-6 DNA Methylase JHS79_03365 PF12161 HsdM N-terminal domain JHS79_03385 PF00589 Phage integrase family JHS79_03385 PF13356 Arm DNA-binding domain JHS79_03395 PF01668 SmpB protein JHS79_03400 PF03364 Polyketide cyclase / dehydrase and lipid transport JHS79_03405 PF03658 RnfH family Ubiquitin JHS79_03410 PF04355 SmpA / OmlA family JHS79_03415 PF02463 RecF/RecN/SMC N terminal domain JHS79_03425 PF01513 ATP-NAD kinase JHS79_03430 PF01025 GrpE JHS79_03435 PF00375 Sodium:dicarboxylate symporter family JHS79_03440 PF00012 Hsp70 protein JHS79_03445 PF00226 DnaJ domain JHS79_03445 PF01556 DnaJ C terminal domain JHS79_03445 PF00684 DnaJ central domain JHS79_03450 PF07963 Prokaryotic N-terminal methylation motif JHS79_03450 PF00114 Pilin (bacterial filament) JHS79_03475 PF03806 AbgT putative transporter family JHS79_03480 PF14437 MafB19-like deaminase JHS79_03490 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family JHS79_03495 PF13609 Gram-negative porin JHS79_03500 PF01272 Transcription elongation factor, GreA/GreB, C-term JHS79_03500 PF03449 Transcription elongation factor, N-terminal JHS79_03505 PF01985 CRS1 / YhbY (CRM) domain JHS79_03510 PF01728 FtsJ-like methyltransferase JHS79_03515 PF00004 ATPase family associated with various cellular activities (AAA) JHS79_03515 PF17862 AAA+ lid domain JHS79_03515 PF06480 FtsH Extracellular JHS79_03515 PF01434 Peptidase family M41 JHS79_03520 PF00809 Pterin binding enzyme JHS79_03525 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JHS79_03525 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JHS79_03525 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JHS79_03525 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JHS79_03530 PF03840 Preprotein translocase SecG subunit JHS79_03545 PF02576 RimP N-terminal domain JHS79_03545 PF17384 RimP C-terminal SH3 domain JHS79_03550 PF13184 NusA-like KH domain JHS79_03550 PF00575 S1 RNA binding domain JHS79_03550 PF08529 NusA N-terminal domain JHS79_03555 PF04760 Translation initiation factor IF-2, N-terminal region JHS79_03555 PF08364 Bacterial translation initiation factor IF-2 associated region JHS79_03555 PF00009 Elongation factor Tu GTP binding domain JHS79_03555 PF11987 Translation-initiation factor 2 JHS79_03560 PF02033 Ribosome-binding factor A JHS79_03565 PF01509 TruB family pseudouridylate synthase (N terminal domain) JHS79_03565 PF16198 tRNA pseudouridylate synthase B C-terminal domain JHS79_03565 PF09157 Pseudouridine synthase II TruB, C-terminal JHS79_03570 PF00312 Ribosomal protein S15 JHS79_03575 PF00575 S1 RNA binding domain JHS79_03575 PF00013 KH domain JHS79_03575 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JHS79_03575 PF01138 3' exoribonuclease family, domain 1 JHS79_03575 PF03725 3' exoribonuclease family, domain 2 JHS79_03580 PF07719 Tetratricopeptide repeat JHS79_03580 PF13181 Tetratricopeptide repeat JHS79_03590 PF01554 MatE JHS79_03595 PF01136 Peptidase family U32 JHS79_03600 PF01136 Peptidase family U32 JHS79_03605 PF03707 Bacterial signalling protein N terminal repeat JHS79_03605 PF00563 EAL domain JHS79_03605 PF00990 Diguanylate cyclase, GGDEF domain JHS79_03610 PF02036 SCP-2 sterol transfer family JHS79_03615 PF13508 Acetyltransferase (GNAT) domain JHS79_03635 PF03144 Elongation factor Tu domain 2 JHS79_03635 PF00009 Elongation factor Tu GTP binding domain JHS79_03635 PF16658 Class II release factor RF3, C-terminal domain JHS79_03645 PF01026 TatD related DNase JHS79_03650 PF07662 Na+ dependent nucleoside transporter C-terminus JHS79_03650 PF01773 Na+ dependent nucleoside transporter N-terminus JHS79_03650 PF07670 Nucleoside recognition JHS79_03655 PF01791 DeoC/LacD family aldolase JHS79_03660 PF00591 Glycosyl transferase family, a/b domain JHS79_03660 PF02885 Glycosyl transferase family, helical bundle domain JHS79_03660 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain JHS79_03665 PF01676 Metalloenzyme superfamily JHS79_03670 PF01048 Phosphorylase superfamily JHS79_03680 PF18429 Domain of unknown function (DUF5609) JHS79_03690 PF18073 Rubredoxin metal binding domain JHS79_03695 PF00679 Elongation factor G C-terminus JHS79_03695 PF14492 Elongation Factor G, domain II JHS79_03695 PF03764 Elongation factor G, domain IV JHS79_03695 PF00009 Elongation factor Tu GTP binding domain JHS79_03695 PF03144 Elongation factor Tu domain 2 JHS79_03700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_03700 PF03466 LysR substrate binding domain JHS79_03710 PF00501 AMP-binding enzyme JHS79_03715 PF12833 Helix-turn-helix domain JHS79_03715 PF02805 Metal binding domain of Ada JHS79_03740 PF13629 Pilus formation protein N terminal region JHS79_03740 PF00263 Bacterial type II and III secretion system protein JHS79_03740 PF04972 BON domain JHS79_03770 PF00437 Type II/IV secretion system protein JHS79_03800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_03800 PF03466 LysR substrate binding domain JHS79_03805 PF13520 Amino acid permease JHS79_03810 PF04074 YhcH/YjgK/YiaL JHS79_03815 PF02837 Glycosyl hydrolases family 2, sugar binding domain JHS79_03815 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JHS79_03815 PF00703 Glycosyl hydrolases family 2 JHS79_03815 PF16353 Domain of unknown function(DUF4981) JHS79_03815 PF02929 Beta galactosidase small chain JHS79_03820 PF00356 Bacterial regulatory proteins, lacI family JHS79_03825 PF16363 GDP-mannose 4,6 dehydratase JHS79_03830 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain JHS79_03830 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain JHS79_03835 PF00288 GHMP kinases N terminal domain JHS79_03835 PF10509 Galactokinase galactose-binding signature JHS79_03835 PF08544 GHMP kinases C terminal JHS79_03840 PF01263 Aldose 1-epimerase JHS79_03845 PF00356 Bacterial regulatory proteins, lacI family JHS79_03860 PF00356 Bacterial regulatory proteins, lacI family JHS79_03865 PF01588 Putative tRNA binding domain JHS79_03880 PF01544 CorA-like Mg2+ transporter protein JHS79_03885 PF01266 FAD dependent oxidoreductase JHS79_03885 PF16901 C-terminal domain of alpha-glycerophosphate oxidase JHS79_03890 PF00455 DeoR C terminal sensor domain JHS79_03890 PF08220 DeoR-like helix-turn-helix domain JHS79_03895 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JHS79_03895 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JHS79_03900 PF00230 Major intrinsic protein JHS79_03905 PF07690 Major Facilitator Superfamily JHS79_03910 PF03009 Glycerophosphoryl diester phosphodiesterase family JHS79_03915 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle JHS79_03915 PF14602 Hexapeptide repeat of succinyl-transferase JHS79_03930 PF07130 YebG protein JHS79_03935 PF03466 LysR substrate binding domain JHS79_03935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_03945 PF11893 Domain of unknown function (DUF3413) JHS79_03945 PF00884 Sulfatase JHS79_03950 PF17946 RecC C-terminal domain JHS79_03955 PF00580 UvrD/REP helicase N-terminal domain JHS79_03955 PF13361 UvrD-like helicase C-terminal domain JHS79_03955 PF12705 PD-(D/E)XK nuclease superfamily JHS79_03960 PF13538 UvrD-like helicase C-terminal domain JHS79_03980 PF00696 Amino acid kinase family JHS79_03980 PF00583 Acetyltransferase (GNAT) family JHS79_03990 PF06725 3D domain JHS79_03990 PF03562 MltA specific insert domain JHS79_03995 PF00899 ThiF family JHS79_04000 PF02657 Fe-S metabolism associated domain JHS79_04005 PF17158 Membrane-associated sensor, integral membrane domain JHS79_04005 PF00990 Diguanylate cyclase, GGDEF domain JHS79_04010 PF00266 Aminotransferase class-V JHS79_04015 PF01965 DJ-1/PfpI family JHS79_04020 PF08546 Ketopantoate reductase PanE/ApbA C terminal JHS79_04020 PF02558 Ketopantoate reductase PanE/ApbA JHS79_04025 PF03502 Nucleoside-specific channel-forming protein, Tsx JHS79_04045 PF04542 Sigma-70 region 2 JHS79_04045 PF04545 Sigma-70, region 4 JHS79_04055 PF07690 Major Facilitator Superfamily JHS79_04060 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JHS79_04065 PF08139 Prokaryotic membrane lipoprotein lipid attachment site JHS79_04065 PF03923 Uncharacterized lipoprotein JHS79_04070 PF05175 Methyltransferase small domain JHS79_04075 PF01722 BolA-like protein JHS79_04080 PF11973 NQRA C-terminal domain JHS79_04080 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) JHS79_04085 PF03116 NQR2, RnfD, RnfE family JHS79_04090 PF04205 FMN-binding domain JHS79_04095 PF02508 Rnf-Nqr subunit, membrane protein JHS79_04100 PF02508 Rnf-Nqr subunit, membrane protein JHS79_04105 PF00175 Oxidoreductase NAD-binding domain JHS79_04105 PF00111 2Fe-2S iron-sulfur cluster binding domain JHS79_04105 PF00970 Oxidoreductase FAD-binding domain JHS79_04110 PF02424 ApbE family JHS79_04125 PF11798 IMS family HHH motif JHS79_04125 PF00817 impB/mucB/samB family JHS79_04125 PF11799 impB/mucB/samB family C-terminal domain JHS79_04130 PF00270 DEAD/DEAH box helicase JHS79_04130 PF00271 Helicase conserved C-terminal domain JHS79_04130 PF00570 HRDC domain JHS79_04130 PF16124 RecQ zinc-binding JHS79_04130 PF09382 RQC domain JHS79_04135 PF03449 Transcription elongation factor, N-terminal JHS79_04135 PF01272 Transcription elongation factor, GreA/GreB, C-term JHS79_04150 PF00209 Sodium:neurotransmitter symporter family JHS79_04160 PF06786 Uncharacterised protein family (UPF0253) JHS79_04170 PF04073 Aminoacyl-tRNA editing domain JHS79_04170 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JHS79_04170 PF03129 Anticodon binding domain JHS79_04175 PF01980 tRNA-methyltransferase O JHS79_04175 PF18389 TrmO C-terminal domain JHS79_04180 PF01197 Ribosomal protein L31 JHS79_04185 PF00444 Ribosomal protein L36 JHS79_04190 PF03806 AbgT putative transporter family JHS79_04195 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 JHS79_04220 PF04287 tRNA pseudouridine synthase C JHS79_04225 PF00849 RNA pseudouridylate synthase JHS79_04230 PF11944 Protein of unknown function (DUF3461) JHS79_04235 PF01909 Nucleotidyltransferase domain JHS79_04235 PF01966 HD domain JHS79_04235 PF08335 GlnD PII-uridylyltransferase JHS79_04235 PF01842 ACT domain JHS79_04240 PF00557 Metallopeptidase family M24 JHS79_04245 PF00318 Ribosomal protein S2 JHS79_04250 PF00889 Elongation factor TS JHS79_04255 PF00696 Amino acid kinase family JHS79_04260 PF01765 Ribosome recycling factor JHS79_04265 PF01255 Putative undecaprenyl diphosphate synthase JHS79_04275 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain JHS79_04275 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase JHS79_04275 PF13288 DXP reductoisomerase C-terminal domain JHS79_04280 PF17820 PDZ domain JHS79_04280 PF02163 Peptidase family M50 JHS79_04285 PF07244 Surface antigen variable number repeat JHS79_04285 PF01103 Surface antigen JHS79_04290 PF03938 Outer membrane protein (OmpH-like) JHS79_04295 PF00132 Bacterial transferase hexapeptide (six repeats) JHS79_04295 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD JHS79_04300 PF07977 FabA-like domain JHS79_04305 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 JHS79_04305 PF00132 Bacterial transferase hexapeptide (six repeats) JHS79_04310 PF02684 Lipid-A-disaccharide synthetase JHS79_04315 PF01351 Ribonuclease HII JHS79_04320 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JHS79_04320 PF14579 Helix-hairpin-helix motif JHS79_04320 PF02811 PHP domain JHS79_04320 PF01336 OB-fold nucleic acid binding domain JHS79_04320 PF07733 Bacterial DNA polymerase III alpha NTPase domain JHS79_04325 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit JHS79_04330 PF01171 PP-loop family JHS79_04330 PF09179 TilS substrate binding domain JHS79_04330 PF11734 TilS substrate C-terminal domain JHS79_04335 PF00034 Cytochrome c JHS79_04340 PF00543 Nitrogen regulatory protein P-II JHS79_04345 PF03372 Endonuclease/Exonuclease/phosphatase family JHS79_04355 PF01464 Transglycosylase SLT domain JHS79_04355 PF01476 LysM domain JHS79_04360 PF16123 Hydroxyacylglutathione hydrolase C-terminus JHS79_04360 PF00753 Metallo-beta-lactamase superfamily JHS79_04365 PF08241 Methyltransferase domain JHS79_04370 PF00075 RNase H JHS79_04375 PF00929 Exonuclease JHS79_04395 PF00916 Sulfate permease family JHS79_04395 PF01740 STAS domain JHS79_04400 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JHS79_04400 PF09317 Domain of unknown function (DUF1974) JHS79_04400 PF02770 Acyl-CoA dehydrogenase, middle domain JHS79_04400 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JHS79_04405 PF13580 SIS domain JHS79_04410 PF13230 Glutamine amidotransferases class-II JHS79_04415 PF00950 ABC 3 transport family JHS79_04420 PF00005 ABC transporter JHS79_04425 PF01297 Zinc-uptake complex component A periplasmic JHS79_04430 PF02311 AraC-like ligand binding domain JHS79_04430 PF12833 Helix-turn-helix domain JHS79_04435 PF04023 FeoA domain JHS79_04440 PF17910 FeoB cytosolic helical domain JHS79_04440 PF02421 Ferrous iron transport protein B JHS79_04440 PF07670 Nucleoside recognition JHS79_04440 PF07664 Ferrous iron transport protein B C terminus JHS79_04455 PF03485 Arginyl tRNA synthetase N terminal domain JHS79_04455 PF05746 DALR anticodon binding domain JHS79_04455 PF00750 tRNA synthetases class I (R) JHS79_04460 PF06185 YecM protein JHS79_04465 PF01842 ACT domain JHS79_04465 PF00551 Formyl transferase JHS79_04470 PF13307 Helicase C-terminal domain JHS79_04470 PF04851 Type III restriction enzyme, res subunit JHS79_04475 PF00814 Glycoprotease family JHS79_04490 PF00561 alpha/beta hydrolase fold JHS79_04495 PF13193 AMP-binding enzyme C-terminal domain JHS79_04495 PF00501 AMP-binding enzyme JHS79_04500 PF01612 3'-5' exonuclease JHS79_04500 PF00570 HRDC domain JHS79_04505 PF03776 Septum formation topological specificity factor MinE JHS79_04510 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JHS79_04515 PF05209 Septum formation inhibitor MinC, N-terminal domain JHS79_04515 PF03775 Septum formation inhibitor MinC, C-terminal domain JHS79_04520 PF05166 YcgL domain JHS79_04525 PF13406 Transglycosylase SLT domain JHS79_04530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_04530 PF03466 LysR substrate binding domain JHS79_04535 PF07662 Na+ dependent nucleoside transporter C-terminus JHS79_04535 PF01773 Na+ dependent nucleoside transporter N-terminus JHS79_04535 PF07670 Nucleoside recognition JHS79_04540 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JHS79_04540 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JHS79_04555 PF02801 Beta-ketoacyl synthase, C-terminal domain JHS79_04555 PF00109 Beta-ketoacyl synthase, N-terminal domain JHS79_04565 PF07977 FabA-like domain JHS79_04570 PF00109 Beta-ketoacyl synthase, N-terminal domain JHS79_04570 PF02801 Beta-ketoacyl synthase, C-terminal domain JHS79_04595 PF00221 Aromatic amino acid lyase JHS79_04600 PF00535 Glycosyl transferase family 2 JHS79_04605 PF07977 FabA-like domain JHS79_04620 PF00550 Phosphopantetheine attachment site JHS79_04625 PF00550 Phosphopantetheine attachment site JHS79_04650 PF04820 Tryptophan halogenase JHS79_04660 PF00571 CBS domain JHS79_04660 PF03471 Transporter associated domain JHS79_04660 PF01595 Cyclin M transmembrane N-terminal domain JHS79_04665 PF00270 DEAD/DEAH box helicase JHS79_04665 PF00271 Helicase conserved C-terminal domain JHS79_04670 PF02080 TrkA-C domain JHS79_04670 PF02254 TrkA-N domain JHS79_04675 PF02386 Cation transport protein JHS79_04690 PF02696 Uncharacterized ACR, YdiU/UPF0061 family JHS79_04695 PF03480 Bacterial extracellular solute-binding protein, family 7 JHS79_04700 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component JHS79_04705 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JHS79_04715 PF02954 Bacterial regulatory protein, Fis family JHS79_04715 PF00072 Response regulator receiver domain JHS79_04715 PF00158 Sigma-54 interaction domain JHS79_04720 PF02743 Cache domain JHS79_04720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_04720 PF00512 His Kinase A (phospho-acceptor) domain JHS79_04730 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JHS79_04730 PF05698 Bacterial trigger factor protein (TF) C-terminus JHS79_04730 PF05697 Bacterial trigger factor protein (TF) JHS79_04735 PF00574 Clp protease JHS79_04740 PF07724 AAA domain (Cdc48 subfamily) JHS79_04740 PF06689 ClpX C4-type zinc finger JHS79_04740 PF10431 C-terminal, D2-small domain, of ClpB protein JHS79_04745 PF00004 ATPase family associated with various cellular activities (AAA) JHS79_04745 PF05362 Lon protease (S16) C-terminal proteolytic domain JHS79_04745 PF02190 ATP-dependent protease La (LON) substrate-binding domain JHS79_04750 PF00216 Bacterial DNA-binding protein JHS79_04755 PF13145 PPIC-type PPIASE domain JHS79_04775 PF01966 HD domain JHS79_04775 PF13286 Phosphohydrolase-associated domain JHS79_04785 PF00155 Aminotransferase class I and II JHS79_04790 PF00425 chorismate binding enzyme JHS79_04795 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JHS79_04795 PF16582 Middle domain of thiamine pyrophosphate JHS79_04795 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JHS79_04800 PF12697 Alpha/beta hydrolase family JHS79_04805 PF00378 Enoyl-CoA hydratase/isomerase JHS79_04810 PF13378 Enolase C-terminal domain-like JHS79_04815 PF00501 AMP-binding enzyme JHS79_04815 PF13193 AMP-binding enzyme C-terminal domain JHS79_04825 PF03601 Conserved hypothetical protein 698 JHS79_04830 PF07690 Major Facilitator Superfamily JHS79_04875 PF13533 Biotin-lipoyl like JHS79_04880 PF00873 AcrB/AcrD/AcrF family JHS79_04900 PF00291 Pyridoxal-phosphate dependent enzyme JHS79_04905 PF01037 Lrp/AsnC ligand binding domain JHS79_04905 PF13404 AsnC-type helix-turn-helix domain JHS79_04920 PF09619 Type III secretion system lipoprotein chaperone (YscW) JHS79_04925 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JHS79_04935 PF00990 Diguanylate cyclase, GGDEF domain JHS79_04975 PF00005 ABC transporter JHS79_05035 PF00588 SpoU rRNA Methylase family JHS79_05035 PF08032 RNA 2'-O ribose methyltransferase substrate binding JHS79_05040 PF00037 4Fe-4S binding domain JHS79_05040 PF11953 Domain of unknown function (DUF3470) JHS79_05050 PF00571 CBS domain JHS79_05050 PF00478 IMP dehydrogenase / GMP reductase domain JHS79_05055 PF00403 Heavy-metal-associated domain JHS79_05060 PF01048 Phosphorylase superfamily JHS79_05070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS79_05070 PF00672 HAMP domain JHS79_05075 PF01230 HIT domain JHS79_05090 PF13036 Peptidoglycan-synthase activator LpoB JHS79_05090 PF08139 Prokaryotic membrane lipoprotein lipid attachment site JHS79_05100 PF05728 Uncharacterised protein family (UPF0227) JHS79_05105 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS79_05120 PF17757 UvrB interaction domain JHS79_05120 PF00271 Helicase conserved C-terminal domain JHS79_05120 PF00270 DEAD/DEAH box helicase JHS79_05120 PF02559 CarD-like/TRCF domain JHS79_05120 PF03461 TRCF domain JHS79_05130 PF12704 MacB-like periplasmic core domain JHS79_05130 PF02687 FtsX-like permease family JHS79_05135 PF00005 ABC transporter JHS79_05140 PF12704 MacB-like periplasmic core domain JHS79_05140 PF02687 FtsX-like permease family JHS79_05150 PF00753 Metallo-beta-lactamase superfamily JHS79_05150 PF13567 Domain of unknown function (DUF4131) JHS79_05150 PF03772 Competence protein JHS79_05155 PF00005 ABC transporter JHS79_05155 PF00664 ABC transporter transmembrane region JHS79_05160 PF02606 Tetraacyldisaccharide-1-P 4'-kinase JHS79_05165 PF03966 Trm112p-like protein JHS79_05170 PF02348 Cytidylyltransferase JHS79_05175 PF04293 SpoVR like protein JHS79_05180 PF04285 Protein of unknown function (DUF444) JHS79_05185 PF08298 PrkA AAA domain JHS79_05185 PF06798 PrkA serine protein kinase C-terminal domain JHS79_05190 PF03887 YfbU domain JHS79_05200 PF04055 Radical SAM superfamily JHS79_05210 PF01228 Glycine radical JHS79_05210 PF02901 Pyruvate formate lyase-like JHS79_05225 PF00005 ABC transporter JHS79_05230 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS79_05235 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_05240 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_05255 PF17757 UvrB interaction domain JHS79_05255 PF12344 Ultra-violet resistance protein B JHS79_05255 PF02151 UvrB/uvrC motif JHS79_05255 PF04851 Type III restriction enzyme, res subunit JHS79_05255 PF00271 Helicase conserved C-terminal domain JHS79_05260 PF00072 Response regulator receiver domain JHS79_05260 PF02954 Bacterial regulatory protein, Fis family JHS79_05260 PF00158 Sigma-54 interaction domain JHS79_05265 PF01627 Hpt domain JHS79_05270 PF01933 Uncharacterised protein family UPF0052 JHS79_05275 PF06463 Molybdenum Cofactor Synthesis C JHS79_05275 PF04055 Radical SAM superfamily JHS79_05280 PF00994 Probable molybdopterin binding domain JHS79_05285 PF01967 MoaC family JHS79_05290 PF02597 ThiS family JHS79_05295 PF02391 MoaE protein JHS79_05300 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JHS79_05305 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_05310 PF12911 N-terminal TM domain of oligopeptide transport permease C JHS79_05310 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_05315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS79_05315 PF00005 ABC transporter JHS79_05320 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS79_05320 PF00005 ABC transporter JHS79_05325 PF13409 Glutathione S-transferase, N-terminal domain JHS79_05335 PF13194 Domain of unknown function (DUF4010) JHS79_05340 PF01515 Phosphate acetyl/butaryl transferase JHS79_05340 PF07085 DRTGG domain JHS79_05345 PF00871 Acetokinase family JHS79_05350 PF04217 Protein of unknown function, DUF412 JHS79_05360 PF02653 Branched-chain amino acid transport system / permease component JHS79_05365 PF00005 ABC transporter JHS79_05370 PF02903 Alpha amylase, N-terminal ig-like domain JHS79_05370 PF00128 Alpha amylase, catalytic domain JHS79_05375 PF00072 Response regulator receiver domain JHS79_05375 PF00990 Diguanylate cyclase, GGDEF domain JHS79_05380 PF02445 Quinolinate synthetase A protein JHS79_05390 PF03994 Domain of Unknown Function (DUF350) JHS79_05400 PF03738 Glutathionylspermidine synthase preATP-grasp JHS79_05410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_05410 PF00512 His Kinase A (phospho-acceptor) domain JHS79_05410 PF09308 LuxQ, periplasmic JHS79_05410 PF00072 Response regulator receiver domain JHS79_05415 PF06610 L-alanine exporter JHS79_05425 PF00672 HAMP domain JHS79_05425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS79_05425 PF12729 Four helix bundle sensory module for signal transduction JHS79_05430 PF00529 HlyD membrane-fusion protein of T1SS JHS79_05430 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS79_05435 PF00873 AcrB/AcrD/AcrF family JHS79_05450 PF00579 tRNA synthetases class I (W and Y) JHS79_05460 PF03372 Endonuclease/Exonuclease/phosphatase family JHS79_05465 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) JHS79_05475 PF03466 LysR substrate binding domain JHS79_05475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_05485 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JHS79_05485 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JHS79_05490 PF01037 Lrp/AsnC ligand binding domain JHS79_05495 PF13491 4TM region of DNA translocase FtsK/SpoIIIE JHS79_05495 PF17854 FtsK alpha domain JHS79_05495 PF09397 Ftsk gamma domain JHS79_05495 PF01580 FtsK/SpoIIIE family JHS79_05500 PF03548 Outer membrane lipoprotein carrier protein LolA JHS79_05505 PF00004 ATPase family associated with various cellular activities (AAA) JHS79_05505 PF16193 AAA C-terminal domain JHS79_05505 PF12002 MgsA AAA+ ATPase C terminal JHS79_05510 PF02403 Seryl-tRNA synthetase N-terminal domain JHS79_05510 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JHS79_05525 PF01258 Prokaryotic dksA/traR C4-type zinc finger JHS79_05530 PF00202 Aminotransferase class-III JHS79_05535 PF04055 Radical SAM superfamily JHS79_05535 PF06968 Biotin and Thiamin Synthesis associated domain JHS79_05540 PF00155 Aminotransferase class I and II JHS79_05545 PF08241 Methyltransferase domain JHS79_05560 PF01435 Peptidase family M48 JHS79_05570 PF00106 short chain dehydrogenase JHS79_05605 PF08328 Adenylosuccinate lyase C-terminal JHS79_05605 PF00206 Lyase JHS79_05610 PF04356 Protein of unknown function (DUF489) JHS79_05625 PF00294 pfkB family carbohydrate kinase JHS79_05630 PF00816 H-NS histone family JHS79_05635 PF03553 Na+/H+ antiporter family JHS79_05645 PF00158 Sigma-54 interaction domain JHS79_05645 PF00072 Response regulator receiver domain JHS79_05645 PF02954 Bacterial regulatory protein, Fis family JHS79_05650 PF01634 ATP phosphoribosyltransferase JHS79_05650 PF08029 HisG, C-terminal domain JHS79_05655 PF00815 Histidinol dehydrogenase JHS79_05660 PF00155 Aminotransferase class I and II JHS79_05665 PF00475 Imidazoleglycerol-phosphate dehydratase JHS79_05665 PF08645 Polynucleotide kinase 3 phosphatase JHS79_05670 PF00117 Glutamine amidotransferase class-I JHS79_05675 PF00977 Histidine biosynthesis protein JHS79_05680 PF00977 Histidine biosynthesis protein JHS79_05685 PF01502 Phosphoribosyl-AMP cyclohydrolase JHS79_05685 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase JHS79_05690 PF02810 SEC-C motif JHS79_05695 PF08668 HDOD domain JHS79_05695 PF00563 EAL domain JHS79_05700 PF00149 Calcineurin-like phosphoesterase JHS79_05705 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JHS79_05710 PF01406 tRNA synthetases class I (C) catalytic domain JHS79_05710 PF09190 DALR domain JHS79_05715 PF00265 Thymidine kinase JHS79_05720 PF01797 Transposase IS200 like JHS79_05740 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS79_05740 PF00529 HlyD membrane-fusion protein of T1SS JHS79_05745 PF03466 LysR substrate binding domain JHS79_05745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_05765 PF00672 HAMP domain JHS79_05765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_05765 PF00512 His Kinase A (phospho-acceptor) domain JHS79_05770 PF00486 Transcriptional regulatory protein, C terminal JHS79_05770 PF00072 Response regulator receiver domain JHS79_05775 PF00672 HAMP domain JHS79_05775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS79_05780 PF08497 Radical SAM N-terminal JHS79_05780 PF04055 Radical SAM superfamily JHS79_05780 PF11842 Domain of unknown function (DUF3362) JHS79_05785 PF01590 GAF domain JHS79_05785 PF00563 EAL domain JHS79_05785 PF00360 Phytochrome region JHS79_05785 PF00990 Diguanylate cyclase, GGDEF domain JHS79_05800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_05800 PF03466 LysR substrate binding domain JHS79_05805 PF08267 Cobalamin-independent synthase, N-terminal domain JHS79_05805 PF01717 Cobalamin-independent synthase, Catalytic domain JHS79_05815 PF03795 YCII-related domain JHS79_05820 PF03061 Thioesterase superfamily JHS79_05825 PF04279 Intracellular septation protein A JHS79_05835 PF00072 Response regulator receiver domain JHS79_05835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_05840 PF17327 Acyl homoserine lactone synthase JHS79_05845 PF00375 Sodium:dicarboxylate symporter family JHS79_05850 PF00501 AMP-binding enzyme JHS79_05850 PF13193 AMP-binding enzyme C-terminal domain JHS79_05855 PF00027 Cyclic nucleotide-binding domain JHS79_05855 PF13545 Crp-like helix-turn-helix domain JHS79_05860 PF00290 Tryptophan synthase alpha chain JHS79_05865 PF00291 Pyridoxal-phosphate dependent enzyme JHS79_05870 PF00218 Indole-3-glycerol phosphate synthase JHS79_05870 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase JHS79_05875 PF02885 Glycosyl transferase family, helical bundle domain JHS79_05875 PF00591 Glycosyl transferase family, a/b domain JHS79_05880 PF00117 Glutamine amidotransferase class-I JHS79_05885 PF04715 Anthranilate synthase component I, N terminal region JHS79_05885 PF00425 chorismate binding enzyme JHS79_05890 PF08056 Tryptophan operon leader peptide JHS79_05895 PF02811 PHP domain JHS79_05900 PF01300 Telomere recombination JHS79_05910 PF01479 S4 domain JHS79_05910 PF00849 RNA pseudouridylate synthase JHS79_05915 PF04269 Protein of unknown function, DUF440 JHS79_05920 PF01132 Elongation factor P (EF-P) OB domain JHS79_05920 PF08207 Elongation factor P (EF-P) KOW-like domain JHS79_05920 PF09285 Elongation factor P, C-terminal JHS79_05930 PF03104 DNA polymerase family B, exonuclease domain JHS79_05930 PF00136 DNA polymerase family B JHS79_05935 PF00072 Response regulator receiver domain JHS79_05935 PF00196 Bacterial regulatory proteins, luxR family JHS79_05940 PF08459 UvrC Helix-hairpin-helix N-terminal JHS79_05940 PF02151 UvrB/uvrC motif JHS79_05940 PF01541 GIY-YIG catalytic domain JHS79_05945 PF01066 CDP-alcohol phosphatidyltransferase JHS79_05970 PF00202 Aminotransferase class-III JHS79_05975 PF16653 Saccharopine dehydrogenase C-terminal domain JHS79_05975 PF03435 Saccharopine dehydrogenase NADP binding domain JHS79_05980 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JHS79_05995 PF00994 Probable molybdopterin binding domain JHS79_06005 PF00268 Ribonucleotide reductase, small chain JHS79_06010 PF00317 Ribonucleotide reductase, all-alpha domain JHS79_06010 PF03477 ATP cone domain JHS79_06010 PF02867 Ribonucleotide reductase, barrel domain JHS79_06020 PF03989 DNA gyrase C-terminal domain, beta-propeller JHS79_06020 PF00521 DNA gyrase/topoisomerase IV, subunit A JHS79_06035 PF02335 Cytochrome c552 JHS79_06045 PF13247 4Fe-4S dicluster domain JHS79_06050 PF03916 Polysulphide reductase, NrfD JHS79_06055 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal JHS79_06055 PF01578 Cytochrome C assembly protein JHS79_06060 PF08534 Redoxin JHS79_06065 PF03918 Cytochrome C biogenesis protein JHS79_06075 PF00925 GTP cyclohydrolase II JHS79_06100 PF01471 Putative peptidoglycan binding domain JHS79_06100 PF03734 L,D-transpeptidase catalytic domain JHS79_06105 PF05951 Bacterial protein of unknown function (DUF882) JHS79_06110 PF00753 Metallo-beta-lactamase superfamily JHS79_06125 PF03480 Bacterial extracellular solute-binding protein, family 7 JHS79_06135 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JHS79_06140 PF17200 Single Cache domain 2 JHS79_06140 PF07730 Histidine kinase JHS79_06145 PF00072 Response regulator receiver domain JHS79_06145 PF00196 Bacterial regulatory proteins, luxR family JHS79_06150 PF01047 MarR family JHS79_06155 PF02028 BCCT, betaine/carnitine/choline family transporter JHS79_06160 PF00672 HAMP domain JHS79_06160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS79_06180 PF00155 Aminotransferase class I and II JHS79_06195 PF00155 Aminotransferase class I and II JHS79_06195 PF00392 Bacterial regulatory proteins, gntR family JHS79_06205 PF01336 OB-fold nucleic acid binding domain JHS79_06205 PF00152 tRNA synthetases class II (D, K and N) JHS79_06210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS79_06210 PF00672 HAMP domain JHS79_06210 PF12729 Four helix bundle sensory module for signal transduction JHS79_06215 PF01242 6-pyruvoyl tetrahydropterin synthase JHS79_06225 PF04940 Sensors of blue-light using FAD JHS79_06225 PF00563 EAL domain JHS79_06230 PF03315 Serine dehydratase beta chain JHS79_06230 PF03313 Serine dehydratase alpha chain JHS79_06235 PF03222 Tryptophan/tyrosine permease family JHS79_06240 PF00293 NUDIX domain JHS79_06250 PF09308 LuxQ, periplasmic JHS79_06250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_06250 PF00512 His Kinase A (phospho-acceptor) domain JHS79_06250 PF00072 Response regulator receiver domain JHS79_06255 PF04715 Anthranilate synthase component I, N terminal region JHS79_06255 PF00425 chorismate binding enzyme JHS79_06270 PF04317 YcjX-like family, DUF463 JHS79_06275 PF05128 Domain of unknown function (DUF697) JHS79_06280 PF00158 Sigma-54 interaction domain JHS79_06280 PF18024 Helix-turn-helix domain JHS79_06285 PF13302 Acetyltransferase (GNAT) domain JHS79_06305 PF13099 Domain of unknown function (DUF3944) JHS79_06305 PF03981 Ubiquinol-cytochrome C chaperone JHS79_06320 PF12167 Arm DNA-binding domain JHS79_06320 PF00589 Phage integrase family JHS79_06340 PF10065 Uncharacterized conserved protein (DUF2303) JHS79_06355 PF00717 Peptidase S24-like JHS79_06355 PF01381 Helix-turn-helix JHS79_06385 PF03354 Phage Terminase JHS79_06405 PF06147 Protein of unknown function (DUF968) JHS79_06450 PF00959 Phage lysozyme JHS79_06480 PF01957 NfeD-like C-terminal, partner-binding JHS79_06480 PF01972 Serine dehydrogenase proteinase JHS79_06490 PF03864 Phage major capsid protein E JHS79_06595 PF00589 Phage integrase family JHS79_06595 PF13495 Phage integrase, N-terminal SAM-like domain JHS79_06610 PF01209 ubiE/COQ5 methyltransferase family JHS79_06775 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JHS79_06790 PF13344 Haloacid dehalogenase-like hydrolase JHS79_06790 PF00293 NUDIX domain JHS79_06875 PF01809 Putative membrane protein insertion efficiency factor JHS79_06955 PF04463 Protein of unknown function (DUF523) JHS79_07255 PF08351 Domain of unknown function (DUF1726) JHS79_07255 PF13718 GNAT acetyltransferase 2 JHS79_07255 PF05127 Helicase JHS79_07255 PF17176 tRNA-binding domain JHS79_07410 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JHS79_07465 PF13676 TIR domain JHS79_07640 PF00583 Acetyltransferase (GNAT) family JHS79_07660 PF01809 Putative membrane protein insertion efficiency factor JHS79_07770 PF00583 Acetyltransferase (GNAT) family JHS79_07875 PF04229 GrpB protein JHS79_07875 PF13673 Acetyltransferase (GNAT) domain JHS79_07950 PF04463 Protein of unknown function (DUF523) JHS79_08130 PF13737 Transposase DDE domain JHS79_08300 PF13439 Glycosyltransferase Family 4 JHS79_08300 PF00534 Glycosyl transferases group 1 JHS79_08310 PF00158 Sigma-54 interaction domain JHS79_08310 PF02954 Bacterial regulatory protein, Fis family JHS79_08310 PF00072 Response regulator receiver domain JHS79_08325 PF10531 SLBB domain JHS79_08325 PF02563 Polysaccharide biosynthesis/export protein JHS79_08335 PF01740 STAS domain JHS79_08340 PF01068 ATP dependent DNA ligase domain JHS79_08340 PF14743 DNA ligase OB-like domain JHS79_08350 PF01554 MatE JHS79_08355 PF00677 Lumazine binding domain JHS79_08365 PF03881 Fructosamine kinase JHS79_08370 PF01339 CheB methylesterase JHS79_08370 PF00072 Response regulator receiver domain JHS79_08375 PF00990 Diguanylate cyclase, GGDEF domain JHS79_08375 PF05230 MASE2 domain JHS79_08385 PF00877 NlpC/P60 family JHS79_08390 PF00672 HAMP domain JHS79_08390 PF17202 Single cache domain 3 JHS79_08390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS79_08425 PF03942 DTW domain JHS79_08430 PF00480 ROK family JHS79_08445 PF00300 Histidine phosphatase superfamily (branch 1) JHS79_08460 PF00939 Sodium:sulfate symporter transmembrane region JHS79_08465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_08465 PF00512 His Kinase A (phospho-acceptor) domain JHS79_08465 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS79_08470 PF02954 Bacterial regulatory protein, Fis family JHS79_08470 PF00072 Response regulator receiver domain JHS79_08470 PF00158 Sigma-54 interaction domain JHS79_08475 PF00563 EAL domain JHS79_08475 PF00990 Diguanylate cyclase, GGDEF domain JHS79_08475 PF03707 Bacterial signalling protein N terminal repeat JHS79_08480 PF11871 Domain of unknown function (DUF3391) JHS79_08480 PF01966 HD domain JHS79_08485 PF01810 LysE type translocator JHS79_08490 PF11230 Protein of unknown function (DUF3029) JHS79_08495 PF04055 Radical SAM superfamily JHS79_08505 PF03741 Integral membrane protein TerC family JHS79_08515 PF01966 HD domain JHS79_08520 PF00465 Iron-containing alcohol dehydrogenase JHS79_08525 PF03222 Tryptophan/tyrosine permease family JHS79_08545 PF00005 ABC transporter JHS79_08545 PF00664 ABC transporter transmembrane region JHS79_08550 PF00664 ABC transporter transmembrane region JHS79_08550 PF00005 ABC transporter JHS79_08575 PF00012 Hsp70 protein JHS79_08580 PF00012 Hsp70 protein JHS79_08590 PF00990 Diguanylate cyclase, GGDEF domain JHS79_08590 PF17158 Membrane-associated sensor, integral membrane domain JHS79_08620 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JHS79_08620 PF00384 Molybdopterin oxidoreductase JHS79_08620 PF01568 Molydopterin dinucleotide binding domain JHS79_08625 PF13247 4Fe-4S dicluster domain JHS79_08625 PF12800 4Fe-4S binding domain JHS79_08630 PF04976 DMSO reductase anchor subunit (DmsC) JHS79_08635 PF02613 Nitrate reductase delta subunit JHS79_08645 PF02525 Flavodoxin-like fold JHS79_08650 PF00271 Helicase conserved C-terminal domain JHS79_08650 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold JHS79_08650 PF11898 Domain of unknown function (DUF3418) JHS79_08650 PF04408 Helicase associated domain (HA2) JHS79_08650 PF00270 DEAD/DEAH box helicase JHS79_08665 PF02028 BCCT, betaine/carnitine/choline family transporter JHS79_08675 PF02397 Bacterial sugar transferase JHS79_08680 PF00535 Glycosyl transferase family 2 JHS79_08685 PF13439 Glycosyltransferase Family 4 JHS79_08685 PF00534 Glycosyl transferases group 1 JHS79_08695 PF00994 Probable molybdopterin binding domain JHS79_08695 PF03454 MoeA C-terminal region (domain IV) JHS79_08695 PF03453 MoeA N-terminal region (domain I and II) JHS79_08700 PF12804 MobA-like NTP transferase domain JHS79_08705 PF00005 ABC transporter JHS79_08705 PF08402 TOBE domain JHS79_08710 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_08715 PF12849 PBP superfamily domain JHS79_08720 PF02954 Bacterial regulatory protein, Fis family JHS79_08720 PF00072 Response regulator receiver domain JHS79_08720 PF00158 Sigma-54 interaction domain JHS79_08725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_08725 PF00512 His Kinase A (phospho-acceptor) domain JHS79_08730 PF00005 ABC transporter JHS79_08730 PF12848 ABC transporter JHS79_08735 PF02634 FdhD/NarQ family JHS79_08755 PF02613 Nitrate reductase delta subunit JHS79_08765 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JHS79_08765 PF01568 Molydopterin dinucleotide binding domain JHS79_08765 PF00384 Molybdopterin oxidoreductase JHS79_08770 PF13247 4Fe-4S dicluster domain JHS79_08785 PF03527 RHS protein JHS79_08785 PF05593 RHS Repeat JHS79_08845 PF00909 Ammonium Transporter Family JHS79_08855 PF02146 Sir2 family JHS79_08860 PF13416 Bacterial extracellular solute-binding protein JHS79_08865 PF13416 Bacterial extracellular solute-binding protein JHS79_08870 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_08875 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_08880 PF08402 TOBE domain JHS79_08880 PF00005 ABC transporter JHS79_08900 PF01171 PP-loop family JHS79_08905 PF00582 Universal stress protein family JHS79_08910 PF00027 Cyclic nucleotide-binding domain JHS79_08910 PF13545 Crp-like helix-turn-helix domain JHS79_08925 PF00403 Heavy-metal-associated domain JHS79_08935 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP JHS79_08935 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JHS79_08950 PF00115 Cytochrome C and Quinol oxidase polypeptide I JHS79_08965 PF00512 His Kinase A (phospho-acceptor) domain JHS79_08965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_08965 PF00072 Response regulator receiver domain JHS79_08965 PF09308 LuxQ, periplasmic JHS79_09015 PF05707 Zonular occludens toxin (Zot) JHS79_09020 PF08681 Protein of unknown function (DUF1778) JHS79_09090 PF06303 MatP N-terminal domain JHS79_09090 PF17414 MatP C-terminal ribbon-helix-helix domain JHS79_09095 PF13654 AAA domain JHS79_09095 PF05362 Lon protease (S16) C-terminal proteolytic domain JHS79_09100 PF07977 FabA-like domain JHS79_09105 PF04957 Ribosome modulation factor JHS79_09115 PF12848 ABC transporter JHS79_09115 PF00005 ABC transporter JHS79_09115 PF16326 ABC transporter C-terminal domain JHS79_09125 PF01170 Putative RNA methylase family UPF0020 JHS79_09125 PF10672 S-adenosylmethionine-dependent methyltransferase JHS79_09125 PF02926 THUMP domain JHS79_09130 PF07126 Cell-division protein ZapC JHS79_09135 PF01180 Dihydroorotate dehydrogenase JHS79_09140 PF05088 Bacterial NAD-glutamate dehydrogenase JHS79_09150 PF11940 Domain of unknown function (DUF3458) Ig-like fold JHS79_09150 PF01433 Peptidase family M1 domain JHS79_09150 PF17432 Domain of unknown function (DUF3458_C) ARM repeats JHS79_09160 PF11818 C-terminal domain of tail specific protease (DUF3340) JHS79_09160 PF00595 PDZ domain JHS79_09160 PF03572 Peptidase family S41 JHS79_09160 PF17804 Tail specific protease N-terminal domain JHS79_09165 PF04352 ProQ/FINO family JHS79_09165 PF17516 ProQ C-terminal domain JHS79_09170 PF13185 GAF domain JHS79_09175 PF00664 ABC transporter transmembrane region JHS79_09175 PF00005 ABC transporter JHS79_09180 PF04403 Paraquat-inducible protein A JHS79_09185 PF02470 MlaD protein JHS79_09190 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF JHS79_09190 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF JHS79_09190 PF01189 16S rRNA methyltransferase RsmB/F JHS79_09210 PF00793 DAHP synthetase I family JHS79_09215 PF04461 Protein of unknown function (DUF520) JHS79_09220 PF14824 Sirohaem biosynthesis protein central JHS79_09220 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JHS79_09220 PF10414 Sirohaem synthase dimerisation region JHS79_09225 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS79_09230 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_09235 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_09240 PF00005 ABC transporter JHS79_09245 PF01027 Inhibitor of apoptosis-promoting Bax1 JHS79_09255 PF04358 DsrC like protein JHS79_09260 PF00708 Acylphosphatase JHS79_09265 PF02743 Cache domain JHS79_09265 PF00672 HAMP domain JHS79_09265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS79_09270 PF10672 S-adenosylmethionine-dependent methyltransferase JHS79_09270 PF17785 PUA-like domain JHS79_09285 PF00691 OmpA family JHS79_09285 PF05736 OprF membrane domain JHS79_09300 PF00691 OmpA family JHS79_09300 PF05736 OprF membrane domain JHS79_09310 PF00990 Diguanylate cyclase, GGDEF domain JHS79_09310 PF17158 Membrane-associated sensor, integral membrane domain JHS79_09315 PF06508 Queuosine biosynthesis protein QueC JHS79_09320 PF04055 Radical SAM superfamily JHS79_09335 PF00089 Trypsin JHS79_09340 PF00583 Acetyltransferase (GNAT) family JHS79_09345 PF16177 Acetyl-coenzyme A synthetase N-terminus JHS79_09345 PF00501 AMP-binding enzyme JHS79_09345 PF13193 AMP-binding enzyme C-terminal domain JHS79_09350 PF04303 PrpF protein JHS79_09355 PF00330 Aconitase family (aconitate hydratase) JHS79_09355 PF00694 Aconitase C-terminal domain JHS79_09360 PF00285 Citrate synthase, C-terminal domain JHS79_09390 PF01970 Tripartite tricarboxylate transporter TctA family JHS79_09395 PF01925 Sulfite exporter TauE/SafE JHS79_09405 PF05844 YopD protein JHS79_09415 PF07720 Tetratricopeptide repeat JHS79_09420 PF04792 V antigen (LcrV) protein JHS79_09425 PF07216 LcrG protein JHS79_09430 PF09621 Type III secretion system regulator (LcrR) JHS79_09435 PF00771 FHIPEP family JHS79_09455 PF09059 TyeA JHS79_09460 PF07201 HrpJ-like domain JHS79_09465 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JHS79_09465 PF02874 ATP synthase alpha/beta family, beta-barrel domain JHS79_09465 PF18269 T3SS EscN ATPase C-terminal domain JHS79_09480 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JHS79_09485 PF00813 FliP family JHS79_09490 PF01313 Bacterial export proteins, family 3 JHS79_09495 PF01311 Bacterial export proteins, family 1 JHS79_09500 PF01312 FlhB HrpN YscU SpaS Family JHS79_09505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_09505 PF03466 LysR substrate binding domain JHS79_09510 PF12146 Serine aminopeptidase, S33 JHS79_09515 PF12146 Serine aminopeptidase, S33 JHS79_09545 PF02661 Fic/DOC family JHS79_09555 PF02108 Flagellar assembly protein FliH JHS79_09565 PF01514 Secretory protein of YscJ/FliF family JHS79_09570 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI JHS79_09580 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) JHS79_09585 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF JHS79_09595 PF16697 Inner membrane component of T3SS, cytoplasmic domain JHS79_09595 PF16693 Inner membrane component of T3SS, periplasmic domain JHS79_09600 PF00263 Bacterial type II and III secretion system protein JHS79_09600 PF03958 Bacterial type II/III secretion system short domain JHS79_09615 PF12833 Helix-turn-helix domain JHS79_09635 PF00171 Aldehyde dehydrogenase family JHS79_09640 PF00158 Sigma-54 interaction domain JHS79_09640 PF01590 GAF domain JHS79_09640 PF02954 Bacterial regulatory protein, Fis family JHS79_09670 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JHS79_09670 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain JHS79_09675 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JHS79_09680 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain JHS79_09680 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain JHS79_09685 PF12431 Transcriptional regulator JHS79_09685 PF00072 Response regulator receiver domain JHS79_09690 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain JHS79_09690 PF17203 Single cache domain 3 JHS79_09690 PF00989 PAS fold JHS79_09690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_09705 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS79_09720 PF03150 Di-haem cytochrome c peroxidase JHS79_09720 PF00034 Cytochrome c JHS79_09740 PF00696 Amino acid kinase family JHS79_09740 PF13840 ACT domain JHS79_09745 PF06339 Ectoine synthase JHS79_09750 PF00202 Aminotransferase class-III JHS79_09755 PF00583 Acetyltransferase (GNAT) family JHS79_09760 PF02028 BCCT, betaine/carnitine/choline family transporter JHS79_09775 PF00005 ABC transporter JHS79_09775 PF00571 CBS domain JHS79_09780 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_09785 PF04069 Substrate binding domain of ABC-type glycine betaine transport system JHS79_09795 PF00501 AMP-binding enzyme JHS79_09815 PF00072 Response regulator receiver domain JHS79_09815 PF00486 Transcriptional regulatory protein, C terminal JHS79_09820 PF08521 Two-component sensor kinase N-terminal JHS79_09820 PF00512 His Kinase A (phospho-acceptor) domain JHS79_09820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_09825 PF00884 Sulfatase JHS79_09850 PF01235 Sodium:alanine symporter family JHS79_09860 PF01810 LysE type translocator JHS79_09865 PF02074 Carboxypeptidase Taq (M32) metallopeptidase JHS79_09870 PF03279 Bacterial lipid A biosynthesis acyltransferase JHS79_09875 PF13520 Amino acid permease JHS79_09885 PF04204 Homoserine O-succinyltransferase JHS79_09900 PF00563 EAL domain JHS79_09900 PF00990 Diguanylate cyclase, GGDEF domain JHS79_09900 PF03707 Bacterial signalling protein N terminal repeat JHS79_09905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_09905 PF00512 His Kinase A (phospho-acceptor) domain JHS79_09905 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JHS79_09905 PF00072 Response regulator receiver domain JHS79_09905 PF00672 HAMP domain JHS79_09905 PF01627 Hpt domain JHS79_09920 PF00132 Bacterial transferase hexapeptide (six repeats) JHS79_09920 PF12464 Maltose acetyltransferase JHS79_09930 PF01928 CYTH domain JHS79_09940 PF04237 YjbR JHS79_09945 PF01047 MarR family JHS79_09955 PF12833 Helix-turn-helix domain JHS79_09960 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JHS79_09960 PF01411 tRNA synthetases class II (A) JHS79_09960 PF02272 DHHA1 domain JHS79_09970 PF00563 EAL domain JHS79_09970 PF12792 CSS motif domain associated with EAL JHS79_09975 PF01368 DHH family JHS79_09975 PF02833 DHHA2 domain JHS79_09980 PF00202 Aminotransferase class-III JHS79_09985 PF00171 Aldehyde dehydrogenase family JHS79_09990 PF04371 Porphyromonas-type peptidyl-arginine deiminase JHS79_09995 PF00795 Carbon-nitrogen hydrolase JHS79_10000 PF01266 FAD dependent oxidoreductase JHS79_10005 PF00171 Aldehyde dehydrogenase family JHS79_10010 PF07883 Cupin domain JHS79_10010 PF01381 Helix-turn-helix JHS79_10015 PF07722 Peptidase C26 JHS79_10020 PF00120 Glutamine synthetase, catalytic domain JHS79_10025 PF03553 Na+/H+ antiporter family JHS79_10045 PF13302 Acetyltransferase (GNAT) domain JHS79_10050 PF01810 LysE type translocator JHS79_10100 PF02223 Thymidylate kinase JHS79_10235 PF04466 Phage terminase large subunit JHS79_10235 PF17288 Terminase RNAseH like domain JHS79_10255 PF07411 Domain of unknown function (DUF1508) JHS79_10285 PF08206 Ribonuclease B OB domain JHS79_10285 PF00773 RNB domain JHS79_10285 PF17876 Cold shock domain JHS79_10285 PF08461 Ribonuclease R winged-helix domain JHS79_10285 PF00575 S1 RNA binding domain JHS79_10290 PF00313 'Cold-shock' DNA-binding domain JHS79_10345 PF00717 Peptidase S24-like JHS79_10345 PF01381 Helix-turn-helix JHS79_10395 PF02798 Glutathione S-transferase, N-terminal domain JHS79_10395 PF14497 Glutathione S-transferase, C-terminal domain JHS79_10405 PF04209 homogentisate 1,2-dioxygenase JHS79_10410 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JHS79_10415 PF07687 Peptidase dimerisation domain JHS79_10415 PF01546 Peptidase family M20/M25/M40 JHS79_10420 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JHS79_10425 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_10430 PF12911 N-terminal TM domain of oligopeptide transport permease C JHS79_10430 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_10435 PF00005 ABC transporter JHS79_10435 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS79_10440 PF00005 ABC transporter JHS79_10440 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS79_10450 PF01752 Collagenase JHS79_10450 PF08453 Peptidase family M9 N-terminal JHS79_10460 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_10465 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_10470 PF00005 ABC transporter JHS79_10470 PF08402 TOBE domain JHS79_10475 PF00701 Dihydrodipicolinate synthetase family JHS79_10495 PF05544 Proline racemase JHS79_10500 PF00171 Aldehyde dehydrogenase family JHS79_10505 PF00392 Bacterial regulatory proteins, gntR family JHS79_10525 PF05971 RNA methyltransferase JHS79_10530 PF01863 Protein of unknown function DUF45 JHS79_10545 PF17746 SfsA N-terminal OB domain JHS79_10545 PF03749 Sugar fermentation stimulation protein RE domain JHS79_10565 PF00239 Resolvase, N terminal domain JHS79_10565 PF02796 Helix-turn-helix domain of resolvase JHS79_10675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_10675 PF03466 LysR substrate binding domain JHS79_10695 PF00005 ABC transporter JHS79_10700 PF01032 FecCD transport family JHS79_10705 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family JHS79_10720 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase JHS79_10725 PF02654 Cobalamin-5-phosphate synthase JHS79_10735 PF13460 NAD(P)H-binding JHS79_10740 PF00375 Sodium:dicarboxylate symporter family JHS79_10745 PF08411 Exonuclease C-terminal JHS79_10745 PF00929 Exonuclease JHS79_10750 PF03788 LrgA family JHS79_10755 PF04172 LrgB-like family JHS79_10760 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JHS79_10760 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region JHS79_10765 PF02222 ATP-grasp domain JHS79_10770 PF05724 Thiopurine S-methyltransferase (TPMT) JHS79_10780 PF00216 Bacterial DNA-binding protein JHS79_10790 PF03483 B3/4 domain JHS79_10790 PF03484 tRNA synthetase B5 domain JHS79_10790 PF03147 Ferredoxin-fold anticodon binding domain JHS79_10790 PF01588 Putative tRNA binding domain JHS79_10790 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JHS79_10795 PF01409 tRNA synthetases class II core domain (F) JHS79_10795 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JHS79_10800 PF00990 Diguanylate cyclase, GGDEF domain JHS79_10800 PF17158 Membrane-associated sensor, integral membrane domain JHS79_10830 PF01906 Putative heavy-metal-binding JHS79_10835 PF00453 Ribosomal protein L20 JHS79_10840 PF01632 Ribosomal protein L35 JHS79_10845 PF05198 Translation initiation factor IF-3, N-terminal domain JHS79_10845 PF00707 Translation initiation factor IF-3, C-terminal domain JHS79_10850 PF02824 TGS domain JHS79_10850 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JHS79_10850 PF03129 Anticodon binding domain JHS79_10850 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JHS79_10865 PF00392 Bacterial regulatory proteins, gntR family JHS79_10865 PF07702 UTRA domain JHS79_10870 PF01979 Amidohydrolase family JHS79_10875 PF00491 Arginase family JHS79_10880 PF17392 Urocanase C-terminal domain JHS79_10880 PF17391 Urocanase N-terminal domain JHS79_10880 PF01175 Urocanase Rossmann-like domain JHS79_10885 PF00221 Aromatic amino acid lyase JHS79_10895 PF04191 Phospholipid methyltransferase JHS79_10900 PF13183 4Fe-4S dicluster domain JHS79_10900 PF02913 FAD linked oxidases, C-terminal domain JHS79_10900 PF01565 FAD binding domain JHS79_10915 PF05736 OprF membrane domain JHS79_10915 PF00691 OmpA family JHS79_10935 PF01259 SAICAR synthetase JHS79_10940 PF16655 PhoD-like phosphatase, N-terminal domain JHS79_10940 PF09423 PhoD-like phosphatase JHS79_10950 PF02253 Phospholipase A1 JHS79_10955 PF00270 DEAD/DEAH box helicase JHS79_10955 PF04408 Helicase associated domain (HA2) JHS79_10955 PF00271 Helicase conserved C-terminal domain JHS79_10955 PF08482 ATP-dependent helicase C-terminal JHS79_10960 PF03949 Malic enzyme, NAD binding domain JHS79_10960 PF00390 Malic enzyme, N-terminal domain JHS79_10965 PF02698 DUF218 domain JHS79_10970 PF00939 Sodium:sulfate symporter transmembrane region JHS79_10975 PF00990 Diguanylate cyclase, GGDEF domain JHS79_10975 PF00072 Response regulator receiver domain JHS79_10985 PF00266 Aminotransferase class-V JHS79_10995 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS79_11000 PF00664 ABC transporter transmembrane region JHS79_11000 PF00005 ABC transporter JHS79_11005 PF00005 ABC transporter JHS79_11005 PF00664 ABC transporter transmembrane region JHS79_11010 PF00291 Pyridoxal-phosphate dependent enzyme JHS79_11015 PF00266 Aminotransferase class-V JHS79_11025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_11025 PF00512 His Kinase A (phospho-acceptor) domain JHS79_11025 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS79_11040 PF04993 TfoX N-terminal domain JHS79_11040 PF04994 TfoX C-terminal domain JHS79_11050 PF03956 Lysine exporter LysO JHS79_11060 PF00282 Pyridoxal-dependent decarboxylase conserved domain JHS79_11065 PF01418 Helix-turn-helix domain, rpiR family JHS79_11065 PF01380 SIS domain JHS79_11070 PF00465 Iron-containing alcohol dehydrogenase JHS79_11075 PF00462 Glutaredoxin JHS79_11080 PF06826 Predicted Permease Membrane Region JHS79_11080 PF02080 TrkA-C domain JHS79_11085 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase JHS79_11085 PF07055 Enoyl reductase FAD binding domain JHS79_11085 PF12241 Trans-2-enoyl-CoA reductase catalytic region JHS79_11090 PF02770 Acyl-CoA dehydrogenase, middle domain JHS79_11090 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JHS79_11090 PF09317 Domain of unknown function (DUF1974) JHS79_11090 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JHS79_11095 PF00440 Bacterial regulatory proteins, tetR family JHS79_11095 PF16295 Tetracyclin repressor-like, C-terminal domain JHS79_11100 PF06965 Na+/H+ antiporter 1 JHS79_11115 PF00005 ABC transporter JHS79_11120 PF01554 MatE JHS79_11125 PF13460 NAD(P)H-binding JHS79_11125 PF11066 Protein of unknown function (DUF2867) JHS79_11130 PF03264 NapC/NirT cytochrome c family, N-terminal region JHS79_11145 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) JHS79_11160 PF07690 Major Facilitator Superfamily JHS79_11165 PF00849 RNA pseudouridylate synthase JHS79_11165 PF01479 S4 domain JHS79_11170 PF00271 Helicase conserved C-terminal domain JHS79_11170 PF04851 Type III restriction enzyme, res subunit JHS79_11180 PF00486 Transcriptional regulatory protein, C terminal JHS79_11180 PF00072 Response regulator receiver domain JHS79_11185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_11190 PF01386 Ribosomal L25p family JHS79_11205 PF02872 5'-nucleotidase, C-terminal domain JHS79_11205 PF00149 Calcineurin-like phosphoesterase JHS79_11215 PF06945 Protein of unknown function (DUF1289) JHS79_11225 PF00072 Response regulator receiver domain JHS79_11225 PF00196 Bacterial regulatory proteins, luxR family JHS79_11230 PF00512 His Kinase A (phospho-acceptor) domain JHS79_11230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_11240 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JHS79_11240 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS79_11250 PF09335 SNARE associated Golgi protein JHS79_11255 PF13416 Bacterial extracellular solute-binding protein JHS79_11260 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_11265 PF00005 ABC transporter JHS79_11270 PF01066 CDP-alcohol phosphatidyltransferase JHS79_11280 PF01590 GAF domain JHS79_11280 PF00158 Sigma-54 interaction domain JHS79_11285 PF03063 Prismane/CO dehydrogenase family JHS79_11290 PF00970 Oxidoreductase FAD-binding domain JHS79_11290 PF00111 2Fe-2S iron-sulfur cluster binding domain JHS79_11290 PF00175 Oxidoreductase NAD-binding domain JHS79_11300 PF00849 RNA pseudouridylate synthase JHS79_11305 PF12729 Four helix bundle sensory module for signal transduction JHS79_11305 PF00672 HAMP domain JHS79_11305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS79_11310 PF00209 Sodium:neurotransmitter symporter family JHS79_11315 PF13091 PLD-like domain JHS79_11315 PF13396 Phospholipase_D-nuclease N-terminal JHS79_11320 PF01053 Cys/Met metabolism PLP-dependent enzyme JHS79_11325 PF00561 alpha/beta hydrolase fold JHS79_11330 PF03280 Proteobacterial lipase chaperone protein JHS79_11335 PF00958 GMP synthase C terminal domain JHS79_11335 PF03352 Methyladenine glycosylase JHS79_11335 PF00117 Glutamine amidotransferase class-I JHS79_11335 PF13673 Acetyltransferase (GNAT) domain JHS79_11335 PF13302 Acetyltransferase (GNAT) domain JHS79_11340 PF00873 AcrB/AcrD/AcrF family JHS79_11345 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS79_11350 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS79_11355 PF04024 PspC domain JHS79_11360 PF06667 Phage shock protein B JHS79_11365 PF04012 PspA/IM30 family JHS79_11370 PF00158 Sigma-54 interaction domain JHS79_11370 PF02954 Bacterial regulatory protein, Fis family JHS79_11375 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JHS79_11380 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_11385 PF12911 N-terminal TM domain of oligopeptide transport permease C JHS79_11385 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_11390 PF00005 ABC transporter JHS79_11390 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS79_11395 PF00005 ABC transporter JHS79_11405 PF02833 DHHA2 domain JHS79_11405 PF01368 DHH family JHS79_11415 PF16875 Glycosyl hydrolase family 36 N-terminal domain JHS79_11415 PF16874 Glycosyl hydrolase family 36 C-terminal domain JHS79_11420 PF01568 Molydopterin dinucleotide binding domain JHS79_11420 PF00384 Molybdopterin oxidoreductase JHS79_11420 PF18364 Molybdopterin oxidoreductase N-terminal domain JHS79_11425 PF03264 NapC/NirT cytochrome c family, N-terminal region JHS79_11430 PF06796 Periplasmic nitrate reductase protein NapE JHS79_11435 PF03649 Uncharacterised protein family (UPF0014) JHS79_11445 PF01226 Formate/nitrite transporter JHS79_11470 PF02698 DUF218 domain JHS79_11475 PF08267 Cobalamin-independent synthase, N-terminal domain JHS79_11475 PF01717 Cobalamin-independent synthase, Catalytic domain JHS79_11485 PF12833 Helix-turn-helix domain JHS79_11485 PF02311 AraC-like ligand binding domain JHS79_11490 PF00857 Isochorismatase family JHS79_11495 PF00005 ABC transporter JHS79_11495 PF02687 FtsX-like permease family JHS79_11495 PF12704 MacB-like periplasmic core domain JHS79_11500 PF02687 FtsX-like permease family JHS79_11500 PF12704 MacB-like periplasmic core domain JHS79_11500 PF00005 ABC transporter JHS79_11505 PF02687 FtsX-like permease family JHS79_11505 PF12704 MacB-like periplasmic core domain JHS79_11505 PF00005 ABC transporter JHS79_11515 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS79_11530 PF01938 TRAM domain JHS79_11530 PF05958 tRNA (Uracil-5-)-methyltransferase JHS79_11545 PF00085 Thioredoxin JHS79_11550 PF11412 Disulphide bond corrector protein DsbC JHS79_11550 PF02683 Cytochrome C biogenesis protein transmembrane region JHS79_11560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_11560 PF03466 LysR substrate binding domain JHS79_11565 PF00072 Response regulator receiver domain JHS79_11565 PF00196 Bacterial regulatory proteins, luxR family JHS79_11570 PF00512 His Kinase A (phospho-acceptor) domain JHS79_11570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_11575 PF13247 4Fe-4S dicluster domain JHS79_11580 PF03916 Polysulphide reductase, NrfD JHS79_11585 PF00384 Molybdopterin oxidoreductase JHS79_11585 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JHS79_11585 PF01568 Molydopterin dinucleotide binding domain JHS79_11590 PF00034 Cytochrome c JHS79_11595 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JHS79_11600 PF04403 Paraquat-inducible protein A JHS79_11605 PF02470 MlaD protein JHS79_11615 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase JHS79_11625 PF00535 Glycosyl transferase family 2 JHS79_11630 PF01370 NAD dependent epimerase/dehydratase family JHS79_11640 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JHS79_11645 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JHS79_11650 PF18073 Rubredoxin metal binding domain JHS79_11655 PF06305 Lipopolysaccharide assembly protein A domain JHS79_11660 PF00216 Bacterial DNA-binding protein JHS79_11665 PF00575 S1 RNA binding domain JHS79_11670 PF02224 Cytidylate kinase JHS79_11675 PF01343 Peptidase family S49 JHS79_11675 PF08496 Peptidase family S49 N-terminal JHS79_11680 PF00106 short chain dehydrogenase JHS79_11695 PF07733 Bacterial DNA polymerase III alpha NTPase domain JHS79_11695 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JHS79_11695 PF14579 Helix-hairpin-helix motif JHS79_11695 PF02811 PHP domain JHS79_11695 PF01336 OB-fold nucleic acid binding domain JHS79_11700 PF01584 CheW-like domain JHS79_11700 PF00072 Response regulator receiver domain JHS79_11705 PF00480 ROK family JHS79_11710 PF00224 Pyruvate kinase, barrel domain JHS79_11710 PF02887 Pyruvate kinase, alpha/beta domain JHS79_11715 PF01734 Patatin-like phospholipase JHS79_11730 PF00209 Sodium:neurotransmitter symporter family JHS79_11745 PF00367 phosphotransferase system, EIIB JHS79_11745 PF02378 Phosphotransferase system, EIIC JHS79_11750 PF01026 TatD related DNase JHS79_11755 PF09115 DNA polymerase III, delta subunit, C terminal JHS79_11760 PF02223 Thymidylate kinase JHS79_11765 PF02618 YceG-like family JHS79_11770 PF01063 Amino-transferase class IV JHS79_11775 PF02801 Beta-ketoacyl synthase, C-terminal domain JHS79_11775 PF00109 Beta-ketoacyl synthase, N-terminal domain JHS79_11780 PF00550 Phosphopantetheine attachment site JHS79_11790 PF00698 Acyl transferase domain JHS79_11795 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JHS79_11795 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JHS79_11800 PF02504 Fatty acid synthesis protein JHS79_11805 PF01783 Ribosomal L32p protein family JHS79_11810 PF02620 Large ribosomal RNA subunit accumulation protein YceD JHS79_11815 PF02545 Maf-like protein JHS79_11820 PF00849 RNA pseudouridylate synthase JHS79_11820 PF01479 S4 domain JHS79_11825 PF12111 Polyribonucleotide phosphorylase C terminal JHS79_11825 PF10150 Ribonuclease E/G family JHS79_11825 PF00575 S1 RNA binding domain JHS79_11830 PF00916 Sulfate permease family JHS79_11830 PF01740 STAS domain JHS79_11835 PF01451 Low molecular weight phosphotyrosine protein phosphatase JHS79_11840 PF12557 Cob(I)alamin adenosyltransferase N terminal JHS79_11840 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP JHS79_11850 PF00485 Phosphoribulokinase / Uridine kinase family JHS79_11855 PF10609 NUBPL iron-transfer P-loop NTPase JHS79_11860 PF01588 Putative tRNA binding domain JHS79_11860 PF09334 tRNA synthetases class I (M) JHS79_11870 PF00392 Bacterial regulatory proteins, gntR family JHS79_11870 PF07840 FadR C-terminal domain JHS79_11875 PF06450 Bacterial Na+/H+ antiporter B (NhaB) JHS79_11880 PF02600 Disulfide bond formation protein DsbB JHS79_11885 PF03695 Uncharacterised protein family (UPF0149) JHS79_11885 PF02810 SEC-C motif JHS79_11890 PF01207 Dihydrouridine synthase (Dus) JHS79_11895 PF16331 TolA binding protein trimerisation JHS79_11895 PF13174 Tetratricopeptide repeat JHS79_11900 PF00691 OmpA family JHS79_11905 PF07676 WD40-like Beta Propeller Repeat JHS79_11905 PF04052 TolB amino-terminal domain JHS79_11915 PF02472 Biopolymer transport protein ExbD/TolR JHS79_11920 PF01618 MotA/TolQ/ExbB proton channel family JHS79_11925 PF03061 Thioesterase superfamily JHS79_11935 PF08173 Membrane bound YbgT-like protein JHS79_11940 PF02322 Cytochrome bd terminal oxidase subunit II JHS79_11945 PF01654 Cytochrome bd terminal oxidase subunit I JHS79_11950 PF05496 Holliday junction DNA helicase RuvB P-loop domain JHS79_11950 PF05491 RuvB C-terminal winged helix domain JHS79_11950 PF17864 RuvB AAA lid domain JHS79_11955 PF01330 RuvA N terminal domain JHS79_11955 PF07499 RuvA, C-terminal domain JHS79_11960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS79_11960 PF00672 HAMP domain JHS79_11960 PF02203 Tar ligand binding domain homologue JHS79_11965 PF02075 Crossover junction endodeoxyribonuclease RuvC JHS79_11970 PF00152 tRNA synthetases class II (D, K and N) JHS79_11970 PF02938 GAD domain JHS79_11970 PF01336 OB-fold nucleic acid binding domain JHS79_11975 PF01904 Protein of unknown function DUF72 JHS79_11980 PF13649 Methyltransferase domain JHS79_11985 PF08003 Protein of unknown function (DUF1698) JHS79_11990 PF18030 RimK PreATP-grasp domain JHS79_11990 PF08443 RimK-like ATP-grasp domain JHS79_12000 PF18030 RimK PreATP-grasp domain JHS79_12000 PF08443 RimK-like ATP-grasp domain JHS79_12010 PF16330 MukB hinge domain JHS79_12010 PF04310 MukB N-terminal JHS79_12015 PF04288 MukE-like family JHS79_12020 PF03882 MukF winged-helix domain JHS79_12020 PF17192 MukF middle domain JHS79_12020 PF17193 MukF C-terminal domain JHS79_12025 PF13847 Methyltransferase domain JHS79_12030 PF02698 DUF218 domain JHS79_12035 PF00486 Transcriptional regulatory protein, C terminal JHS79_12035 PF00072 Response regulator receiver domain JHS79_12040 PF02613 Nitrate reductase delta subunit JHS79_12045 PF00356 Bacterial regulatory proteins, lacI family JHS79_12050 PF04993 TfoX N-terminal domain JHS79_12050 PF04994 TfoX C-terminal domain JHS79_12070 PF00534 Glycosyl transferases group 1 JHS79_12070 PF08323 Starch synthase catalytic domain JHS79_12075 PF00483 Nucleotidyl transferase JHS79_12080 PF01396 Topoisomerase DNA binding C4 zinc finger JHS79_12080 PF01751 Toprim domain JHS79_12080 PF01131 DNA topoisomerase JHS79_12080 PF08272 Topoisomerase I zinc-ribbon-like JHS79_12085 PF10692 Protein of unknown function (DUF2498) JHS79_12090 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JHS79_12100 PF03588 Leucyl/phenylalanyl-tRNA protein transferase JHS79_12105 PF04376 Arginine-tRNA-protein transferase, N terminus JHS79_12105 PF04377 Arginine-tRNA-protein transferase, C terminus JHS79_12110 PF01176 Translation initiation factor 1A / IF-1 JHS79_12120 PF02861 Clp amino terminal domain, pathogenicity island component JHS79_12120 PF00004 ATPase family associated with various cellular activities (AAA) JHS79_12120 PF07724 AAA domain (Cdc48 subfamily) JHS79_12120 PF17871 AAA lid domain JHS79_12120 PF10431 C-terminal, D2-small domain, of ClpB protein JHS79_12125 PF02617 ATP-dependent Clp protease adaptor protein ClpS JHS79_12130 PF00313 'Cold-shock' DNA-binding domain JHS79_12135 PF03971 Monomeric isocitrate dehydrogenase JHS79_12140 PF00849 RNA pseudouridylate synthase JHS79_12145 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) JHS79_12155 PF13307 Helicase C-terminal domain JHS79_12155 PF06733 DEAD_2 JHS79_12160 PF01925 Sulfite exporter TauE/SafE JHS79_12165 PF07445 Primosomal replication protein priC JHS79_12170 PF10689 Protein of unknown function (DUF2496) JHS79_12175 PF03372 Endonuclease/Exonuclease/phosphatase family JHS79_12190 PF02508 Rnf-Nqr subunit, membrane protein JHS79_12195 PF04060 Putative Fe-S cluster JHS79_12200 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JHS79_12200 PF10531 SLBB domain JHS79_12200 PF13375 RnfC Barrel sandwich hybrid domain JHS79_12200 PF12838 4Fe-4S dicluster domain JHS79_12205 PF03116 NQR2, RnfD, RnfE family JHS79_12210 PF04205 FMN-binding domain JHS79_12215 PF02508 Rnf-Nqr subunit, membrane protein JHS79_12220 PF00730 HhH-GPD superfamily base excision DNA repair protein JHS79_12220 PF10576 Iron-sulfur binding domain of endonuclease III JHS79_12220 PF00633 Helix-hairpin-helix motif JHS79_12225 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JHS79_12230 PF10952 Protein of unknown function (DUF2753) JHS79_12235 PF00691 OmpA family JHS79_12235 PF18393 MotY N-terminal domain JHS79_12240 PF00929 Exonuclease JHS79_12245 PF03553 Na+/H+ antiporter family JHS79_12245 PF13726 Na+-H+ antiporter family JHS79_12255 PF00462 Glutaredoxin JHS79_12260 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JHS79_12260 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JHS79_12275 PF00465 Iron-containing alcohol dehydrogenase JHS79_12275 PF00171 Aldehyde dehydrogenase family JHS79_12280 PF01914 MarC family integral membrane protein JHS79_12285 PF00027 Cyclic nucleotide-binding domain JHS79_12285 PF00520 Ion transport protein JHS79_12290 PF02774 Semialdehyde dehydrogenase, dimerisation domain JHS79_12290 PF01118 Semialdehyde dehydrogenase, NAD binding domain JHS79_12295 PF03553 Na+/H+ antiporter family JHS79_12310 PF04245 37-kD nucleoid-associated bacterial protein JHS79_12315 PF07208 Protein of unknown function (DUF1414) JHS79_12320 PF00884 Sulfatase JHS79_12320 PF11893 Domain of unknown function (DUF3413) JHS79_12330 PF00850 Histone deacetylase domain JHS79_12335 PF00106 short chain dehydrogenase JHS79_12345 PF01131 DNA topoisomerase JHS79_12345 PF01751 Toprim domain JHS79_12350 PF00881 Nitroreductase family JHS79_12355 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JHS79_12355 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS79_12360 PF01343 Peptidase family S49 JHS79_12365 PF00710 Asparaginase, N-terminal JHS79_12365 PF17763 Glutaminase/Asparaginase C-terminal domain JHS79_12370 PF07023 Protein of unknown function (DUF1315) JHS79_12380 PF01641 SelR domain JHS79_12385 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JHS79_12385 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JHS79_12390 PF01263 Aldose 1-epimerase JHS79_12395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS79_12395 PF00672 HAMP domain JHS79_12395 PF02743 Cache domain JHS79_12400 PF13847 Methyltransferase domain JHS79_12415 PF00245 Alkaline phosphatase JHS79_12425 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JHS79_12430 PF03992 Antibiotic biosynthesis monooxygenase JHS79_12435 PF00924 Mechanosensitive ion channel JHS79_12435 PF05552 Conserved TM helix JHS79_12440 PF03692 Putative zinc- or iron-chelating domain JHS79_12445 PF04226 Transglycosylase associated protein JHS79_12450 PF03692 Putative zinc- or iron-chelating domain JHS79_12460 PF03313 Serine dehydratase alpha chain JHS79_12465 PF01042 Endoribonuclease L-PSP JHS79_12475 PF00230 Major intrinsic protein JHS79_12480 PF02132 RecR protein JHS79_12480 PF13662 Toprim domain JHS79_12485 PF02575 YbaB/EbfC DNA-binding family JHS79_12490 PF12170 DNA polymerase III tau subunit V interacting with alpha JHS79_12490 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding JHS79_12490 PF12169 DNA polymerase III subunits gamma and tau domain III JHS79_12495 PF00156 Phosphoribosyl transferase domain JHS79_12500 PF04304 Protein of unknown function (DUF454) JHS79_12505 PF00072 Response regulator receiver domain JHS79_12510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_12510 PF03466 LysR substrate binding domain JHS79_12515 PF00156 Phosphoribosyl transferase domain JHS79_12520 PF02674 Colicin V production protein JHS79_12525 PF05036 Sporulation related domain JHS79_12530 PF02875 Mur ligase family, glutamate ligase domain JHS79_12530 PF08245 Mur ligase middle domain JHS79_12535 PF01039 Carboxyl transferase domain JHS79_12535 PF17848 Acetyl-coA carboxylase zinc finger domain JHS79_12540 PF01416 tRNA pseudouridine synthase JHS79_12550 PF01118 Semialdehyde dehydrogenase, NAD binding domain JHS79_12550 PF02774 Semialdehyde dehydrogenase, dimerisation domain JHS79_12555 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JHS79_12555 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JHS79_12555 PF11890 Domain of unknown function (DUF3410) JHS79_12560 PF00109 Beta-ketoacyl synthase, N-terminal domain JHS79_12560 PF02801 Beta-ketoacyl synthase, C-terminal domain JHS79_12565 PF01266 FAD dependent oxidoreductase JHS79_12565 PF05430 S-adenosyl-L-methionine-dependent methyltransferase JHS79_12570 PF03358 NADPH-dependent FMN reductase JHS79_12575 PF08891 YfcL protein JHS79_12580 PF04315 Elongation factor P hydroxylase JHS79_12585 PF03458 UPF0126 domain JHS79_12590 PF01264 Chorismate synthase JHS79_12595 PF05175 Methyltransferase small domain JHS79_12600 PF01713 Smr domain JHS79_12605 PF00300 Histidine phosphatase superfamily (branch 1) JHS79_12610 PF00675 Insulinase (Peptidase family M16) JHS79_12610 PF05193 Peptidase M16 inactive domain JHS79_12610 PF16187 Middle or third domain of peptidase_M16 JHS79_12620 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JHS79_12620 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JHS79_12620 PF00378 Enoyl-CoA hydratase/isomerase JHS79_12625 PF00108 Thiolase, N-terminal domain JHS79_12625 PF02803 Thiolase, C-terminal domain JHS79_12630 PF08281 Sigma-70, region 4 JHS79_12630 PF04542 Sigma-70 region 2 JHS79_12640 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JHS79_12645 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JHS79_12650 PF04333 MlaA lipoprotein JHS79_12660 PF03918 Cytochrome C biogenesis protein JHS79_12665 PF08534 Redoxin JHS79_12670 PF01578 Cytochrome C assembly protein JHS79_12670 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal JHS79_12675 PF03100 CcmE JHS79_12680 PF04995 Heme exporter protein D (CcmD) JHS79_12685 PF01578 Cytochrome C assembly protein JHS79_12690 PF03379 CcmB protein JHS79_12695 PF00005 ABC transporter JHS79_12705 PF01584 CheW-like domain JHS79_12715 PF13614 AAA domain JHS79_12720 PF01339 CheB methylesterase JHS79_12720 PF00072 Response regulator receiver domain JHS79_12725 PF01584 CheW-like domain JHS79_12725 PF02895 Signal transducing histidine kinase, homodimeric domain JHS79_12725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_12725 PF01627 Hpt domain JHS79_12725 PF00072 Response regulator receiver domain JHS79_12730 PF04344 Chemotaxis phosphatase, CheZ JHS79_12735 PF00072 Response regulator receiver domain JHS79_12740 PF04542 Sigma-70 region 2 JHS79_12740 PF04539 Sigma-70 region 3 JHS79_12740 PF04545 Sigma-70, region 4 JHS79_12745 PF10609 NUBPL iron-transfer P-loop NTPase JHS79_12750 PF00448 SRP54-type protein, GTPase domain JHS79_12755 PF00771 FHIPEP family JHS79_12760 PF01312 FlhB HrpN YscU SpaS Family JHS79_12765 PF01311 Bacterial export proteins, family 1 JHS79_12770 PF01313 Bacterial export proteins, family 3 JHS79_12775 PF00813 FliP family JHS79_12780 PF04347 Flagellar biosynthesis protein, FliO JHS79_12785 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JHS79_12790 PF02154 Flagellar motor switch protein FliM JHS79_12790 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JHS79_12810 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JHS79_12810 PF18269 T3SS EscN ATPase C-terminal domain JHS79_12820 PF01706 FliG C-terminal domain JHS79_12820 PF14841 FliG middle domain JHS79_12820 PF14842 FliG N-terminal domain JHS79_12825 PF01514 Secretory protein of YscJ/FliF family JHS79_12825 PF08345 Flagellar M-ring protein C-terminal JHS79_12830 PF02049 Flagellar hook-basal body complex protein FliE JHS79_12835 PF02954 Bacterial regulatory protein, Fis family JHS79_12835 PF00072 Response regulator receiver domain JHS79_12835 PF00158 Sigma-54 interaction domain JHS79_12840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_12840 PF00512 His Kinase A (phospho-acceptor) domain JHS79_12840 PF13188 PAS domain JHS79_12845 PF00158 Sigma-54 interaction domain JHS79_12845 PF02954 Bacterial regulatory protein, Fis family JHS79_12845 PF06490 Flagellar regulatory protein FleQ JHS79_12850 PF02561 Flagellar protein FliS JHS79_12860 PF02465 Flagellar hook-associated protein 2 N-terminus JHS79_12860 PF07195 Flagellar hook-associated protein 2 C-terminus JHS79_12860 PF07196 Flagellin hook IN motif JHS79_12865 PF03646 FlaG protein JHS79_12870 PF00700 Bacterial flagellin C-terminal helical region JHS79_12870 PF07196 Flagellin hook IN motif JHS79_12870 PF00669 Bacterial flagellin N-terminal helical region JHS79_12875 PF00700 Bacterial flagellin C-terminal helical region JHS79_12875 PF07196 Flagellin hook IN motif JHS79_12875 PF00669 Bacterial flagellin N-terminal helical region JHS79_12880 PF00700 Bacterial flagellin C-terminal helical region JHS79_12880 PF07196 Flagellin hook IN motif JHS79_12880 PF00669 Bacterial flagellin N-terminal helical region JHS79_12885 PF04261 Dyp-type peroxidase family JHS79_12890 PF11143 Protein of unknown function (DUF2919) JHS79_12910 PF03960 ArsC family JHS79_12915 PF07687 Peptidase dimerisation domain JHS79_12915 PF01546 Peptidase family M20/M25/M40 JHS79_12930 PF06804 NlpB/DapX lipoprotein JHS79_12935 PF00701 Dihydrodipicolinate synthetase family JHS79_12940 PF01842 ACT domain JHS79_12945 PF00578 AhpC/TSA family JHS79_12950 PF01594 AI-2E family transporter JHS79_12960 PF01435 Peptidase family M48 JHS79_12960 PF13181 Tetratricopeptide repeat JHS79_12965 PF03960 ArsC family JHS79_12970 PF03358 NADPH-dependent FMN reductase JHS79_12985 PF00860 Permease family JHS79_12995 PF00586 AIR synthase related protein, N-terminal domain JHS79_12995 PF02769 AIR synthase related protein, C-terminal domain JHS79_13000 PF00551 Formyl transferase JHS79_13005 PF02629 CoA binding domain JHS79_13005 PF00549 CoA-ligase JHS79_13010 PF08442 ATP-grasp domain JHS79_13010 PF00549 CoA-ligase JHS79_13015 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JHS79_13015 PF00364 Biotin-requiring enzyme JHS79_13015 PF02817 e3 binding domain JHS79_13020 PF00676 Dehydrogenase E1 component JHS79_13020 PF02779 Transketolase, pyrimidine binding domain JHS79_13020 PF16870 2-oxoglutarate dehydrogenase C-terminal JHS79_13020 PF16078 2-oxoglutarate dehydrogenase N-terminus JHS79_13025 PF13085 2Fe-2S iron-sulfur cluster binding domain JHS79_13030 PF00890 FAD binding domain JHS79_13030 PF02910 Fumarate reductase flavoprotein C-term JHS79_13035 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JHS79_13040 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JHS79_13045 PF00285 Citrate synthase, C-terminal domain JHS79_13050 PF01784 NIF3 (NGG1p interacting factor 3) JHS79_13060 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JHS79_13060 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JHS79_13060 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JHS79_13060 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JHS79_13065 PF17206 SeqA protein N-terminal domain JHS79_13065 PF03925 SeqA protein C-terminal domain JHS79_13070 PF12697 Alpha/beta hydrolase family JHS79_13080 PF00258 Flavodoxin JHS79_13090 PF01475 Ferric uptake regulator family JHS79_13095 PF00749 tRNA synthetases class I (E and Q), catalytic domain JHS79_13095 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain JHS79_13100 PF00367 phosphotransferase system, EIIB JHS79_13100 PF02378 Phosphotransferase system, EIIC JHS79_13105 PF01979 Amidohydrolase family JHS79_13110 PF01047 MarR family JHS79_13110 PF00480 ROK family JHS79_13115 PF00999 Sodium/hydrogen exchanger family JHS79_13115 PF02254 TrkA-N domain JHS79_13120 PF00733 Asparagine synthase JHS79_13120 PF13537 Glutamine amidotransferase domain JHS79_13125 PF02357 Transcription termination factor nusG JHS79_13130 PF00854 POT family JHS79_13135 PF00762 Ferrochelatase JHS79_13140 PF05191 Adenylate kinase, active site lid JHS79_13145 PF00183 Hsp90 protein JHS79_13145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_13150 PF00486 Transcriptional regulatory protein, C terminal JHS79_13155 PF17323 Trans-membrane regulatory protein ToxS JHS79_13170 PF12850 Calcineurin-like phosphoesterase superfamily domain JHS79_13185 PF07556 Protein of unknown function (DUF1538) JHS79_13190 PF07556 Protein of unknown function (DUF1538) JHS79_13195 PF08338 Domain of unknown function (DUF1731) JHS79_13195 PF01370 NAD dependent epimerase/dehydratase family JHS79_13200 PF00106 short chain dehydrogenase JHS79_13205 PF00085 Thioredoxin JHS79_13210 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) JHS79_13215 PF01270 Glycosyl hydrolases family 8 JHS79_13220 PF03170 Bacterial cellulose synthase subunit JHS79_13225 PF03552 Cellulose synthase JHS79_13225 PF00535 Glycosyl transferase family 2 JHS79_13225 PF07238 PilZ domain JHS79_13230 PF06564 Cellulose biosynthesis protein BcsQ JHS79_13240 PF10995 Cellulose biosynthesis GIL JHS79_13250 PF11658 Cellulose biosynthesis protein BcsG JHS79_13255 PF01145 SPFH domain / Band 7 family JHS79_13255 PF16200 C-terminal region of band_7 JHS79_13270 PF03573 outer membrane porin, OprD family JHS79_13275 PF01653 NAD-dependent DNA ligase adenylation domain JHS79_13275 PF12826 Helix-hairpin-helix motif JHS79_13275 PF03120 NAD-dependent DNA ligase OB-fold domain JHS79_13275 PF00533 BRCA1 C Terminus (BRCT) domain JHS79_13275 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JHS79_13280 PF04354 ZipA, C-terminal FtsZ-binding domain JHS79_13290 PF00291 Pyridoxal-phosphate dependent enzyme JHS79_13295 PF00381 PTS HPr component phosphorylation site JHS79_13300 PF05524 PEP-utilising enzyme, N-terminal JHS79_13300 PF00391 PEP-utilising enzyme, mobile domain JHS79_13300 PF02896 PEP-utilising enzyme, TIM barrel domain JHS79_13305 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JHS79_13310 PF00700 Bacterial flagellin C-terminal helical region JHS79_13310 PF07196 Flagellin hook IN motif JHS79_13310 PF00669 Bacterial flagellin N-terminal helical region JHS79_13315 PF07196 Flagellin hook IN motif JHS79_13315 PF00669 Bacterial flagellin N-terminal helical region JHS79_13315 PF00700 Bacterial flagellin C-terminal helical region JHS79_13320 PF07196 Flagellin hook IN motif JHS79_13320 PF00669 Bacterial flagellin N-terminal helical region JHS79_13320 PF00700 Bacterial flagellin C-terminal helical region JHS79_13325 PF00669 Bacterial flagellin N-terminal helical region JHS79_13330 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JHS79_13330 PF07196 Flagellin hook IN motif JHS79_13335 PF10135 Rod binding protein JHS79_13335 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JHS79_13340 PF02119 Flagellar P-ring protein JHS79_13345 PF02107 Flagellar L-ring protein JHS79_13350 PF00460 Flagella basal body rod protein JHS79_13350 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JHS79_13355 PF00460 Flagella basal body rod protein JHS79_13355 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JHS79_13360 PF07559 Flagellar basal body protein FlaE JHS79_13360 PF00460 Flagella basal body rod protein JHS79_13360 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JHS79_13365 PF03963 Flagellar hook capping protein - N-terminal region JHS79_13365 PF13860 FlgD Ig-like domain JHS79_13365 PF13861 FlgD Tudor-like domain JHS79_13370 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JHS79_13370 PF00460 Flagella basal body rod protein JHS79_13375 PF00460 Flagella basal body rod protein JHS79_13380 PF01739 CheR methyltransferase, SAM binding domain JHS79_13380 PF03705 CheR methyltransferase, all-alpha domain JHS79_13385 PF01584 CheW-like domain JHS79_13385 PF00072 Response regulator receiver domain JHS79_13430 PF00691 OmpA family JHS79_13430 PF01389 OmpA-like transmembrane domain JHS79_13435 PF00749 tRNA synthetases class I (E and Q), catalytic domain JHS79_13440 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) JHS79_13445 PF13609 Gram-negative porin JHS79_13450 PF00403 Heavy-metal-associated domain JHS79_13465 PF02838 Glycosyl hydrolase family 20, domain 2 JHS79_13465 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain JHS79_13465 PF00728 Glycosyl hydrolase family 20, catalytic domain JHS79_13465 PF03173 Putative carbohydrate binding domain JHS79_13485 PF01713 Smr domain JHS79_13490 PF00849 RNA pseudouridylate synthase JHS79_13490 PF01479 S4 domain JHS79_13495 PF04073 Aminoacyl-tRNA editing domain JHS79_13500 PF02872 5'-nucleotidase, C-terminal domain JHS79_13500 PF00149 Calcineurin-like phosphoesterase JHS79_13505 PF00793 DAHP synthetase I family JHS79_13510 PF13369 Transglutaminase-like superfamily JHS79_13515 PF04247 Invasion gene expression up-regulator, SirB JHS79_13520 PF17827 PrmC N-terminal domain JHS79_13520 PF13847 Methyltransferase domain JHS79_13525 PF00472 RF-1 domain JHS79_13525 PF03462 PCRF domain JHS79_13530 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain JHS79_13530 PF01488 Shikimate / quinate 5-dehydrogenase JHS79_13530 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain JHS79_13535 PF03550 Outer membrane lipoprotein LolB JHS79_13540 PF08544 GHMP kinases C terminal JHS79_13540 PF00288 GHMP kinases N terminal domain JHS79_13545 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JHS79_13545 PF14572 Phosphoribosyl synthetase-associated domain JHS79_13550 PF01195 Peptidyl-tRNA hydrolase JHS79_13555 PF01926 50S ribosome-binding GTPase JHS79_13555 PF06071 Protein of unknown function (DUF933) JHS79_13670 PF01494 FAD binding domain JHS79_13675 PF04055 Radical SAM superfamily JHS79_13675 PF01938 TRAM domain JHS79_13675 PF00919 Uncharacterized protein family UPF0004 JHS79_13680 PF02562 PhoH-like protein JHS79_13685 PF02130 Uncharacterized protein family UPF0054 JHS79_13690 PF00571 CBS domain JHS79_13690 PF03471 Transporter associated domain JHS79_13695 PF00795 Carbon-nitrogen hydrolase JHS79_13700 PF07295 Zinc-ribbon containing domain JHS79_13705 PF00133 tRNA synthetases class I (I, L, M and V) JHS79_13705 PF13603 Leucyl-tRNA synthetase, Domain 2 JHS79_13705 PF08264 Anticodon-binding domain of tRNA JHS79_13710 PF04390 Lipopolysaccharide-assembly JHS79_13715 PF14840 Processivity clamp loader gamma complex DNA pol III C-term JHS79_13715 PF06144 DNA polymerase III, delta subunit JHS79_13725 PF02590 Predicted SPOUT methyltransferase JHS79_13730 PF03717 Penicillin-binding Protein dimerisation domain JHS79_13730 PF00905 Penicillin binding protein transpeptidase domain JHS79_13735 PF01098 Cell cycle protein JHS79_13740 PF03330 Lytic transglycolase JHS79_13740 PF05036 Sporulation related domain JHS79_13745 PF07943 Penicillin-binding protein 5, C-terminal domain JHS79_13745 PF00768 D-alanyl-D-alanine carboxypeptidase JHS79_13750 PF04359 Protein of unknown function (DUF493) JHS79_13755 PF03099 Biotin/lipoate A/B protein ligase family JHS79_13760 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family JHS79_13760 PF04055 Radical SAM superfamily JHS79_13765 PF00464 Serine hydroxymethyltransferase JHS79_13770 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JHS79_13770 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JHS79_13785 PF16657 Maltogenic Amylase, C-terminal domain JHS79_13785 PF00128 Alpha amylase, catalytic domain JHS79_13790 PF00367 phosphotransferase system, EIIB JHS79_13790 PF02378 Phosphotransferase system, EIIC JHS79_13795 PF00356 Bacterial regulatory proteins, lacI family JHS79_13805 PF09383 NIL domain JHS79_13805 PF00005 ABC transporter JHS79_13810 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_13815 PF03180 NLPA lipoprotein JHS79_13820 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) JHS79_13825 PF07348 Syd protein (SUKH-2) JHS79_13830 PF14489 QueF-like protein JHS79_13830 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term JHS79_13840 PF00990 Diguanylate cyclase, GGDEF domain JHS79_13845 PF03641 Possible lysine decarboxylase JHS79_13845 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases JHS79_13845 PF11892 Domain of unknown function (DUF3412) JHS79_13850 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JHS79_13850 PF01367 5'-3' exonuclease, C-terminal SAM fold JHS79_13855 PF01223 DNA/RNA non-specific endonuclease JHS79_13860 PF18125 RlmM ferredoxin-like domain JHS79_13860 PF01728 FtsJ-like methyltransferase JHS79_13865 PF04241 Protein of unknown function (DUF423) JHS79_13875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_13875 PF03466 LysR substrate binding domain JHS79_13880 PF02568 Thiamine biosynthesis protein (ThiI) JHS79_13880 PF02926 THUMP domain JHS79_13885 PF00691 OmpA family JHS79_13890 PF01618 MotA/TolQ/ExbB proton channel family JHS79_13895 PF02609 Exonuclease VII small subunit JHS79_13900 PF00348 Polyprenyl synthetase JHS79_13905 PF13292 1-deoxy-D-xylulose-5-phosphate synthase JHS79_13905 PF02780 Transketolase, C-terminal domain JHS79_13905 PF02779 Transketolase, pyrimidine binding domain JHS79_13910 PF04608 Phosphatidylglycerophosphatase A JHS79_13915 PF02769 AIR synthase related protein, C-terminal domain JHS79_13915 PF00586 AIR synthase related protein, N-terminal domain JHS79_13920 PF01029 NusB family JHS79_13925 PF00885 6,7-dimethyl-8-ribityllumazine synthase JHS79_13930 PF00925 GTP cyclohydrolase II JHS79_13930 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JHS79_13935 PF00677 Lumazine binding domain JHS79_13940 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JHS79_13940 PF01872 RibD C-terminal domain JHS79_13945 PF03477 ATP cone domain JHS79_13950 PF00171 Aldehyde dehydrogenase family JHS79_13955 PF00696 Amino acid kinase family JHS79_13955 PF01472 PUA domain JHS79_13960 PF07417 Sigma factor-binding transcriptional regulator Crl JHS79_13965 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) JHS79_13970 PF00156 Phosphoribosyl transferase domain JHS79_13975 PF00860 Permease family JHS79_13980 PF07687 Peptidase dimerisation domain JHS79_13980 PF01546 Peptidase family M20/M25/M40 JHS79_14005 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain JHS79_14005 PF02769 AIR synthase related protein, C-terminal domain JHS79_14005 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal JHS79_14010 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS79_14010 PF01464 Transglycosylase SLT domain JHS79_14015 PF00579 tRNA synthetases class I (W and Y) JHS79_14020 PF08525 Opacity-associated protein A N-terminal motif JHS79_14020 PF01476 LysM domain JHS79_14020 PF01551 Peptidase family M23 JHS79_14025 PF00873 AcrB/AcrD/AcrF family JHS79_14035 PF01521 Iron-sulphur cluster biosynthesis JHS79_14040 PF00202 Aminotransferase class-III JHS79_14045 PF01594 AI-2E family transporter JHS79_14050 PF08468 Methyltransferase small domain N-terminal JHS79_14050 PF05175 Methyltransferase small domain JHS79_14055 PF00072 Response regulator receiver domain JHS79_14055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_14055 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS79_14055 PF00512 His Kinase A (phospho-acceptor) domain JHS79_14060 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JHS79_14065 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_14070 PF12911 N-terminal TM domain of oligopeptide transport permease C JHS79_14070 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_14075 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS79_14075 PF00005 ABC transporter JHS79_14080 PF00005 ABC transporter JHS79_14080 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS79_14090 PF01869 BadF/BadG/BcrA/BcrD ATPase family JHS79_14095 PF00728 Glycosyl hydrolase family 20, catalytic domain JHS79_14095 PF02838 Glycosyl hydrolase family 20, domain 2 JHS79_14100 PF06165 Glycosyltransferase family 36 JHS79_14100 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain JHS79_14105 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JHS79_14105 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JHS79_14105 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JHS79_14105 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JHS79_14110 PF08402 TOBE domain JHS79_14110 PF00005 ABC transporter JHS79_14120 PF13416 Bacterial extracellular solute-binding protein JHS79_14125 PF00909 Ammonium Transporter Family JHS79_14130 PF00543 Nitrogen regulatory protein P-II JHS79_14135 PF06062 Uncharacterised protein family (UPF0231) JHS79_14140 PF11791 Aconitate B N-terminal domain JHS79_14140 PF00330 Aconitase family (aconitate hydratase) JHS79_14140 PF06434 Aconitate hydratase 2 N-terminus JHS79_14145 PF01734 Patatin-like phospholipase JHS79_14150 PF00912 Transglycosylase JHS79_14150 PF00905 Penicillin binding protein transpeptidase domain JHS79_14150 PF14814 Bifunctional transglycosylase second domain JHS79_14155 PF00270 DEAD/DEAH box helicase JHS79_14155 PF04408 Helicase associated domain (HA2) JHS79_14155 PF00271 Helicase conserved C-terminal domain JHS79_14155 PF08482 ATP-dependent helicase C-terminal JHS79_14160 PF17746 SfsA N-terminal OB domain JHS79_14160 PF03749 Sugar fermentation stimulation protein RE domain JHS79_14165 PF01258 Prokaryotic dksA/traR C4-type zinc finger JHS79_14170 PF00749 tRNA synthetases class I (E and Q), catalytic domain JHS79_14175 PF12627 Probable RNA and SrmB- binding site of polymerase A JHS79_14175 PF12626 Polymerase A arginine-rich C-terminus JHS79_14175 PF01743 Poly A polymerase head domain JHS79_14180 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JHS79_14185 PF02548 Ketopantoate hydroxymethyltransferase JHS79_14190 PF02569 Pantoate-beta-alanine ligase JHS79_14195 PF03279 Bacterial lipid A biosynthesis acyltransferase JHS79_14200 PF01061 ABC-2 type transporter JHS79_14205 PF00005 ABC transporter JHS79_14210 PF01740 STAS domain JHS79_14210 PF00916 Sulfate permease family JHS79_14215 PF00484 Carbonic anhydrase JHS79_14220 PF00156 Phosphoribosyl transferase domain JHS79_14225 PF00440 Bacterial regulatory proteins, tetR family JHS79_14230 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JHS79_14230 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS79_14235 PF02817 e3 binding domain JHS79_14235 PF00364 Biotin-requiring enzyme JHS79_14235 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JHS79_14240 PF00456 Transketolase, thiamine diphosphate binding domain JHS79_14240 PF17831 Pyruvate dehydrogenase E1 component middle domain JHS79_14245 PF07729 FCD domain JHS79_14245 PF00392 Bacterial regulatory proteins, gntR family JHS79_14250 PF01510 N-acetylmuramoyl-L-alanine amidase JHS79_14255 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain JHS79_14255 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain JHS79_14260 PF00114 Pilin (bacterial filament) JHS79_14260 PF07963 Prokaryotic N-terminal methylation motif JHS79_14265 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JHS79_14265 PF00437 Type II/IV secretion system protein JHS79_14270 PF00482 Type II secretion system (T2SS), protein F JHS79_14275 PF01478 Type IV leader peptidase family JHS79_14275 PF06750 Bacterial Peptidase A24 N-terminal domain JHS79_14280 PF01121 Dephospho-CoA kinase JHS79_14285 PF07072 Cell division protein JHS79_14290 PF03884 DNA gyrase inhibitor YacG JHS79_14295 PF01245 Ribosomal protein L19 JHS79_14300 PF01746 tRNA (Guanine-1)-methyltransferase JHS79_14305 PF01782 RimM N-terminal domain JHS79_14305 PF05239 PRC-barrel domain JHS79_14310 PF00886 Ribosomal protein S16 JHS79_14315 PF00448 SRP54-type protein, GTPase domain JHS79_14315 PF02881 SRP54-type protein, helical bundle domain JHS79_14315 PF02978 Signal peptide binding domain JHS79_14320 PF01578 Cytochrome C assembly protein JHS79_14325 PF01595 Cyclin M transmembrane N-terminal domain JHS79_14325 PF03471 Transporter associated domain JHS79_14325 PF00571 CBS domain JHS79_14330 PF02664 S-Ribosylhomocysteinase (LuxS) JHS79_14340 PF04262 Glutamate-cysteine ligase JHS79_14345 PF00675 Insulinase (Peptidase family M16) JHS79_14345 PF05193 Peptidase M16 inactive domain JHS79_14350 PF09335 SNARE associated Golgi protein JHS79_14355 PF08240 Alcohol dehydrogenase GroES-like domain JHS79_14355 PF00107 Zinc-binding dehydrogenase JHS79_14360 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit JHS79_14365 PF02436 Conserved carboxylase domain JHS79_14365 PF00682 HMGL-like JHS79_14365 PF00364 Biotin-requiring enzyme JHS79_14370 PF04277 Oxaloacetate decarboxylase, gamma chain JHS79_14425 PF02599 Global regulator protein family JHS79_14430 PF00696 Amino acid kinase family JHS79_14430 PF13840 ACT domain JHS79_14430 PF01842 ACT domain JHS79_14435 PF01411 tRNA synthetases class II (A) JHS79_14435 PF02272 DHHA1 domain JHS79_14435 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JHS79_14440 PF02631 RecX family JHS79_14445 PF00154 recA bacterial DNA recombination protein JHS79_14450 PF02464 Competence-damaged protein JHS79_14455 PF01624 MutS domain I JHS79_14455 PF00488 MutS domain V JHS79_14455 PF05188 MutS domain II JHS79_14455 PF05192 MutS domain III JHS79_14455 PF05190 MutS family domain IV JHS79_14460 PF00140 Sigma-70 factor, region 1.2 JHS79_14460 PF04539 Sigma-70 region 3 JHS79_14460 PF04545 Sigma-70, region 4 JHS79_14460 PF04542 Sigma-70 region 2 JHS79_14465 PF01551 Peptidase family M23 JHS79_14465 PF01476 LysM domain JHS79_14475 PF01975 Survival protein SurE JHS79_14480 PF01142 tRNA pseudouridine synthase D (TruD) JHS79_14485 PF02542 YgbB family JHS79_14490 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase JHS79_14495 PF04977 Septum formation initiator JHS79_14500 PF00113 Enolase, C-terminal TIM barrel domain JHS79_14500 PF03952 Enolase, N-terminal domain JHS79_14505 PF06418 CTP synthase N-terminus JHS79_14505 PF00117 Glutamine amidotransferase class-I JHS79_14510 PF03819 MazG nucleotide pyrophosphohydrolase domain JHS79_14515 PF02824 TGS domain JHS79_14515 PF04607 Region found in RelA / SpoT proteins JHS79_14515 PF13291 ACT domain JHS79_14520 PF01938 TRAM domain JHS79_14520 PF05958 tRNA (Uracil-5-)-methyltransferase JHS79_14525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_14525 PF00072 Response regulator receiver domain JHS79_14525 PF01627 Hpt domain JHS79_14525 PF00512 His Kinase A (phospho-acceptor) domain JHS79_14525 PF00672 HAMP domain JHS79_14525 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JHS79_14530 PF01648 4'-phosphopantetheinyl transferase superfamily JHS79_14535 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ JHS79_14540 PF11967 Recombination protein O N terminal JHS79_14540 PF02565 Recombination protein O C terminal JHS79_14545 PF07650 KH domain JHS79_14545 PF01926 50S ribosome-binding GTPase JHS79_14550 PF00035 Double-stranded RNA binding motif JHS79_14550 PF14622 Ribonuclease-III-like JHS79_14555 PF10502 Signal peptidase, peptidase S26 JHS79_14560 PF00679 Elongation factor G C-terminus JHS79_14560 PF03144 Elongation factor Tu domain 2 JHS79_14560 PF06421 GTP-binding protein LepA C-terminus JHS79_14560 PF00009 Elongation factor Tu GTP binding domain JHS79_14570 PF03888 MucB/RseB N-terminal domain JHS79_14570 PF17188 MucB/RseB C-terminal domain JHS79_14575 PF03873 Anti sigma-E protein RseA, C-terminal domain JHS79_14575 PF03872 Anti sigma-E protein RseA, N-terminal domain JHS79_14580 PF04542 Sigma-70 region 2 JHS79_14580 PF08281 Sigma-70, region 4 JHS79_14585 PF00890 FAD binding domain JHS79_14585 PF02910 Fumarate reductase flavoprotein C-term JHS79_14590 PF03937 Flavinator of succinate dehydrogenase JHS79_14595 PF01571 Aminomethyltransferase folate-binding domain JHS79_14610 PF01494 FAD binding domain JHS79_14615 PF01494 FAD binding domain JHS79_14620 PF03695 Uncharacterised protein family (UPF0149) JHS79_14625 PF05164 Cell division protein ZapA JHS79_14635 PF01812 5-formyltetrahydrofolate cyclo-ligase family JHS79_14640 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) JHS79_14645 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JHS79_14645 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JHS79_14645 PF01842 ACT domain JHS79_14650 PF04402 Protein of unknown function (DUF541) JHS79_14655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_14655 PF03466 LysR substrate binding domain JHS79_14660 PF01810 LysE type translocator JHS79_14665 PF04073 Aminoacyl-tRNA editing domain JHS79_14670 PF00924 Mechanosensitive ion channel JHS79_14670 PF05552 Conserved TM helix JHS79_14675 PF01116 Fructose-bisphosphate aldolase class-II JHS79_14680 PF00162 Phosphoglycerate kinase JHS79_14685 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JHS79_14685 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JHS79_14690 PF00593 TonB dependent receptor JHS79_14690 PF07715 TonB-dependent Receptor Plug Domain JHS79_14695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_14695 PF03466 LysR substrate binding domain JHS79_14700 PF02779 Transketolase, pyrimidine binding domain JHS79_14700 PF02780 Transketolase, C-terminal domain JHS79_14700 PF00456 Transketolase, thiamine diphosphate binding domain JHS79_14705 PF02773 S-adenosylmethionine synthetase, C-terminal domain JHS79_14705 PF02772 S-adenosylmethionine synthetase, central domain JHS79_14705 PF00438 S-adenosylmethionine synthetase, N-terminal domain JHS79_14715 PF10263 SprT-like family JHS79_14715 PF17283 SprT-like zinc ribbon domain JHS79_14720 PF04231 Endonuclease I JHS79_14725 PF04452 RNA methyltransferase JHS79_14730 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain JHS79_14730 PF02951 Prokaryotic glutathione synthetase, N-terminal domain JHS79_14735 PF02622 Uncharacterized ACR, COG1678 JHS79_14740 PF03652 Holliday junction resolvase JHS79_14745 PF00437 Type II/IV secretion system protein JHS79_14750 PF00437 Type II/IV secretion system protein JHS79_14755 PF01168 Alanine racemase, N-terminal domain JHS79_14760 PF03807 NADP oxidoreductase coenzyme F420-dependent JHS79_14760 PF14748 Pyrroline-5-carboxylate reductase dimerisation JHS79_14765 PF02325 YGGT family JHS79_14770 PF02594 Uncharacterised ACR, YggU family COG1872 JHS79_14780 PF01725 Ham1 family JHS79_14785 PF04055 Radical SAM superfamily JHS79_14785 PF06969 HemN C-terminal domain JHS79_14790 PF04960 Glutaminase JHS79_14795 PF02086 D12 class N6 adenine-specific DNA methyltransferase JHS79_14800 PF02390 Putative methyltransferase JHS79_14805 PF00633 Helix-hairpin-helix motif JHS79_14805 PF14815 NUDIX domain JHS79_14805 PF00730 HhH-GPD superfamily base excision DNA repair protein JHS79_14810 PF04362 Bacterial Fe(2+) trafficking JHS79_14815 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain JHS79_14815 PF01464 Transglycosylase SLT domain JHS79_14855 PF00672 HAMP domain JHS79_14855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS79_14855 PF17200 Single Cache domain 2 JHS79_14885 PF00171 Aldehyde dehydrogenase family JHS79_14930 PF00072 Response regulator receiver domain JHS79_14935 PF00356 Bacterial regulatory proteins, lacI family JHS79_14935 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JHS79_14940 PF04794 YdjC-like protein JHS79_14945 PF11975 Family 4 glycosyl hydrolase C-terminal domain JHS79_14945 PF02056 Family 4 glycosyl hydrolase JHS79_14950 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit JHS79_14955 PF02378 Phosphotransferase system, EIIC JHS79_14960 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JHS79_14965 PF01522 Polysaccharide deacetylase JHS79_15005 PF00106 short chain dehydrogenase JHS79_15010 PF10011 Predicted membrane protein (DUF2254) JHS79_15020 PF03739 Lipopolysaccharide export system permease LptF/LptG JHS79_15025 PF03739 Lipopolysaccharide export system permease LptF/LptG JHS79_15030 PF00883 Cytosol aminopeptidase family, catalytic domain JHS79_15030 PF02789 Cytosol aminopeptidase family, N-terminal domain JHS79_15035 PF04364 DNA polymerase III chi subunit, HolC JHS79_15040 PF10458 Valyl tRNA synthetase tRNA binding arm JHS79_15040 PF08264 Anticodon-binding domain of tRNA JHS79_15040 PF00133 tRNA synthetases class I (I, L, M and V) JHS79_15050 PF00583 Acetyltransferase (GNAT) family JHS79_15060 PF06877 Regulator of ribonuclease activity B JHS79_15070 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JHS79_15070 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JHS79_15080 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JHS79_15080 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JHS79_15085 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain JHS79_15085 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain JHS79_15090 PF01042 Endoribonuclease L-PSP JHS79_15095 PF01553 Acyltransferase JHS79_15100 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JHS79_15105 PF01722 BolA-like protein JHS79_15115 PF05494 MlaC protein JHS79_15120 PF02470 MlaD protein JHS79_15125 PF02405 Permease MlaE JHS79_15130 PF00005 ABC transporter JHS79_15135 PF01699 Sodium/calcium exchanger protein JHS79_15140 PF00571 CBS domain JHS79_15140 PF01380 SIS domain JHS79_15150 PF03968 OstA-like protein JHS79_15155 PF00005 ABC transporter JHS79_15155 PF12399 Branched-chain amino acid ATP-binding cassette transporter JHS79_15160 PF00309 Sigma-54 factor, Activator interacting domain (AID) JHS79_15160 PF04963 Sigma-54 factor, core binding domain JHS79_15160 PF04552 Sigma-54, DNA binding domain JHS79_15165 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JHS79_15170 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JHS79_15175 PF03668 P-loop ATPase protein family JHS79_15180 PF00381 PTS HPr component phosphorylation site JHS79_15185 PF01769 Divalent cation transporter JHS79_15185 PF00571 CBS domain JHS79_15185 PF03448 MgtE intracellular N domain JHS79_15190 PF01523 Putative modulator of DNA gyrase JHS79_15195 PF04751 Protein of unknown function (DUF615) JHS79_15200 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JHS79_15200 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JHS79_15205 PF00849 RNA pseudouridylate synthase JHS79_15215 PF18337 RapA N-terminal Tudor like domain JHS79_15215 PF00176 SNF2 family N-terminal domain JHS79_15215 PF12137 RNA polymerase recycling family C-terminal JHS79_15215 PF18339 RapA N-terminal Tudor like domain 1 JHS79_15215 PF00271 Helicase conserved C-terminal domain JHS79_15220 PF02562 PhoH-like protein JHS79_15220 PF13638 PIN domain JHS79_15225 PF01523 Putative modulator of DNA gyrase JHS79_15230 PF00795 Carbon-nitrogen hydrolase JHS79_15235 PF13502 AsmA-like C-terminal region JHS79_15235 PF13116 Protein of unknown function JHS79_15240 PF10150 Ribonuclease E/G family JHS79_15240 PF00575 S1 RNA binding domain JHS79_15245 PF02545 Maf-like protein JHS79_15250 PF04093 rod shape-determining protein MreD JHS79_15255 PF04085 rod shape-determining protein MreC JHS79_15295 PF07963 Prokaryotic N-terminal methylation motif JHS79_15305 PF00482 Type II secretion system (T2SS), protein F JHS79_15310 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JHS79_15310 PF00437 Type II/IV secretion system protein JHS79_15320 PF01471 Putative peptidoglycan binding domain JHS79_15320 PF13401 AAA domain JHS79_15325 PF11741 AMIN domain JHS79_15325 PF00263 Bacterial type II and III secretion system protein JHS79_15325 PF03958 Bacterial type II/III secretion system short domain JHS79_15325 PF07660 Secretin and TonB N terminus short domain JHS79_15345 PF00563 EAL domain JHS79_15345 PF17157 Gammaproteobacterial periplasmic sensor domain JHS79_15345 PF00990 Diguanylate cyclase, GGDEF domain JHS79_15350 PF00436 Single-strand binding protein family JHS79_15355 PF00196 Bacterial regulatory proteins, luxR family JHS79_15360 PF00483 Nucleotidyl transferase JHS79_15365 PF00005 ABC transporter JHS79_15365 PF17755 UvrA DNA-binding domain JHS79_15365 PF17760 UvrA interaction domain JHS79_15375 PF00266 Aminotransferase class-V JHS79_15380 PF00696 Amino acid kinase family JHS79_15380 PF01842 ACT domain JHS79_15385 PF02310 B12 binding domain JHS79_15385 PF02607 B12 binding domain JHS79_15385 PF02965 Vitamin B12 dependent methionine synthase, activation domain JHS79_15385 PF00809 Pterin binding enzyme JHS79_15385 PF02574 Homocysteine S-methyltransferase JHS79_15390 PF00999 Sodium/hydrogen exchanger family JHS79_15405 PF13358 DDE superfamily endonuclease JHS79_15460 PF01507 Phosphoadenosine phosphosulfate reductase family JHS79_15465 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JHS79_15465 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JHS79_15470 PF00667 FAD binding domain JHS79_15470 PF00175 Oxidoreductase NAD-binding domain JHS79_15470 PF00258 Flavodoxin JHS79_15490 PF01207 Dihydrouridine synthase (Dus) JHS79_15495 PF01475 Ferric uptake regulator family JHS79_15505 PF00342 Phosphoglucose isomerase JHS79_15510 PF01894 Uncharacterised protein family UPF0047 JHS79_15520 PF00842 Alanine racemase, C-terminal domain JHS79_15520 PF01168 Alanine racemase, N-terminal domain JHS79_15525 PF00772 DnaB-like helicase N terminal domain JHS79_15525 PF03796 DnaB-like helicase C terminal domain JHS79_15535 PF03948 Ribosomal protein L9, C-terminal domain JHS79_15535 PF01281 Ribosomal protein L9, N-terminal domain JHS79_15540 PF01084 Ribosomal protein S18 JHS79_15545 PF00436 Single-strand binding protein family JHS79_15550 PF01250 Ribosomal protein S6 JHS79_15555 PF00834 Ribulose-phosphate 3 epimerase family JHS79_15560 PF02086 D12 class N6 adenine-specific DNA methyltransferase JHS79_15570 PF01761 3-dehydroquinate synthase JHS79_15575 PF01202 Shikimate kinase JHS79_15580 PF07660 Secretin and TonB N terminus short domain JHS79_15580 PF03958 Bacterial type II/III secretion system short domain JHS79_15580 PF00263 Bacterial type II and III secretion system protein JHS79_15580 PF11741 AMIN domain JHS79_15585 PF04351 Pilus assembly protein, PilP JHS79_15595 PF05137 Fimbrial assembly protein (PilN) JHS79_15605 PF17092 Penicillin-binding protein OB-like domain JHS79_15605 PF00912 Transglycosylase JHS79_15605 PF00905 Penicillin binding protein transpeptidase domain JHS79_15610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_15610 PF03466 LysR substrate binding domain JHS79_15615 PF00462 Glutaredoxin JHS79_15615 PF08534 Redoxin JHS79_15625 PF00583 Acetyltransferase (GNAT) family JHS79_15625 PF14698 Argininosuccinate lyase C-terminal JHS79_15625 PF00206 Lyase JHS79_15630 PF00764 Arginosuccinate synthase JHS79_15635 PF00696 Amino acid kinase family JHS79_15640 PF01118 Semialdehyde dehydrogenase, NAD binding domain JHS79_15640 PF02774 Semialdehyde dehydrogenase, dimerisation domain JHS79_15645 PF07687 Peptidase dimerisation domain JHS79_15645 PF01546 Peptidase family M20/M25/M40 JHS79_15650 PF00311 Phosphoenolpyruvate carboxylase JHS79_15660 PF02219 Methylenetetrahydrofolate reductase JHS79_15665 PF03447 Homoserine dehydrogenase, NAD binding domain JHS79_15665 PF00696 Amino acid kinase family JHS79_15665 PF00742 Homoserine dehydrogenase JHS79_15670 PF01053 Cys/Met metabolism PLP-dependent enzyme JHS79_15675 PF01340 Met Apo-repressor, MetJ JHS79_15680 PF00390 Malic enzyme, N-terminal domain JHS79_15680 PF03949 Malic enzyme, NAD binding domain JHS79_15685 PF00210 Ferritin-like domain JHS79_15690 PF04324 BFD-like [2Fe-2S] binding domain JHS79_15695 PF00009 Elongation factor Tu GTP binding domain JHS79_15695 PF03144 Elongation factor Tu domain 2 JHS79_15695 PF03143 Elongation factor Tu C-terminal domain JHS79_15700 PF03764 Elongation factor G, domain IV JHS79_15700 PF14492 Elongation Factor G, domain II JHS79_15700 PF00679 Elongation factor G C-terminus JHS79_15700 PF00009 Elongation factor Tu GTP binding domain JHS79_15700 PF03144 Elongation factor Tu domain 2 JHS79_15705 PF00177 Ribosomal protein S7p/S5e JHS79_15710 PF00164 Ribosomal protein S12/S23 JHS79_15715 PF04077 DsrH like protein JHS79_15720 PF02635 DsrE/DsrF-like family JHS79_15725 PF02635 DsrE/DsrF-like family JHS79_15730 PF13309 HTH domain JHS79_15730 PF08348 YheO-like PAS domain JHS79_15735 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JHS79_15735 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JHS79_15745 PF04102 SlyX JHS79_15750 PF01112 Asparaginase JHS79_15755 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JHS79_15765 PF00999 Sodium/hydrogen exchanger family JHS79_15765 PF02254 TrkA-N domain JHS79_15770 PF02525 Flavodoxin-like fold JHS79_15775 PF12848 ABC transporter JHS79_15775 PF00005 ABC transporter JHS79_15785 PF00561 alpha/beta hydrolase fold JHS79_15790 PF06794 Uncharacterised protein family (UPF0270) JHS79_15795 PF00485 Phosphoribulokinase / Uridine kinase family JHS79_15800 PF13545 Crp-like helix-turn-helix domain JHS79_15800 PF00027 Cyclic nucleotide-binding domain JHS79_15810 PF00171 Aldehyde dehydrogenase family JHS79_15815 PF04958 Arginine N-succinyltransferase beta subunit JHS79_15820 PF00202 Aminotransferase class-III JHS79_15825 PF00117 Glutamine amidotransferase class-I JHS79_15840 PF00579 tRNA synthetases class I (W and Y) JHS79_15845 PF13419 Haloacid dehalogenase-like hydrolase JHS79_15850 PF00588 SpoU rRNA Methylase family JHS79_15850 PF08032 RNA 2'-O ribose methyltransferase substrate binding JHS79_15855 PF17876 Cold shock domain JHS79_15855 PF08461 Ribonuclease R winged-helix domain JHS79_15855 PF08206 Ribonuclease B OB domain JHS79_15855 PF00773 RNB domain JHS79_15855 PF00575 S1 RNA binding domain JHS79_15860 PF02082 Transcriptional regulator JHS79_15865 PF00042 Globin JHS79_15865 PF00175 Oxidoreductase NAD-binding domain JHS79_15865 PF00970 Oxidoreductase FAD-binding domain JHS79_15870 PF08238 Sel1 repeat JHS79_15875 PF00709 Adenylosuccinate synthetase JHS79_15880 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) JHS79_15885 PF01145 SPFH domain / Band 7 family JHS79_15890 PF12221 Bacterial membrane protein N terminal JHS79_15890 PF01145 SPFH domain / Band 7 family JHS79_15895 PF01926 50S ribosome-binding GTPase JHS79_15895 PF13167 GTP-binding GTPase N-terminal JHS79_15895 PF16360 GTP-binding GTPase Middle Region JHS79_15900 PF17209 Hfq protein JHS79_15910 PF01119 DNA mismatch repair protein, C-terminal domain JHS79_15910 PF08676 MutL C terminal dimerisation domain JHS79_15915 PF01520 N-acetylmuramoyl-L-alanine amidase JHS79_15920 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE JHS79_15925 PF08331 Domain of unknown function (DUF1730) JHS79_15995 PF00929 Exonuclease JHS79_16000 PF03193 RsgA GTPase JHS79_16005 PF02666 Phosphatidylserine decarboxylase JHS79_16010 PF00939 Sodium:sulfate symporter transmembrane region JHS79_16015 PF00672 HAMP domain JHS79_16015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS79_16025 PF06415 BPG-independent PGAM N-terminus (iPGM_N) JHS79_16025 PF01676 Metalloenzyme superfamily JHS79_16030 PF00581 Rhodanese-like domain JHS79_16035 PF02556 Preprotein translocase subunit SecB JHS79_16040 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JHS79_16040 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JHS79_16045 PF00132 Bacterial transferase hexapeptide (six repeats) JHS79_16045 PF06426 Serine acetyltransferase, N-terminal JHS79_16050 PF01551 Peptidase family M23 JHS79_16060 PF08360 QacR-like protein, C-terminal region JHS79_16060 PF00440 Bacterial regulatory proteins, tetR family JHS79_16070 PF00152 tRNA synthetases class II (D, K and N) JHS79_16075 PF00890 FAD binding domain JHS79_16075 PF02910 Fumarate reductase flavoprotein C-term JHS79_16080 PF13183 4Fe-4S dicluster domain JHS79_16080 PF13085 2Fe-2S iron-sulfur cluster binding domain JHS79_16085 PF02300 Fumarate reductase subunit C JHS79_16090 PF02313 Fumarate reductase subunit D JHS79_16100 PF01132 Elongation factor P (EF-P) OB domain JHS79_16100 PF08207 Elongation factor P (EF-P) KOW-like domain JHS79_16100 PF09285 Elongation factor P, C-terminal JHS79_16105 PF04055 Radical SAM superfamily JHS79_16110 PF00842 Alanine racemase, C-terminal domain JHS79_16110 PF01168 Alanine racemase, N-terminal domain JHS79_16115 PF02308 MgtC family JHS79_16125 PF00118 TCP-1/cpn60 chaperonin family JHS79_16130 PF00166 Chaperonin 10 Kd subunit JHS79_16135 PF01554 MatE JHS79_16140 PF00365 Phosphofructokinase JHS79_16145 PF16916 Dimerisation domain of Zinc Transporter JHS79_16145 PF01545 Cation efflux family JHS79_16150 PF07813 LTXXQ motif family protein JHS79_16155 PF00486 Transcriptional regulatory protein, C terminal JHS79_16155 PF00072 Response regulator receiver domain JHS79_16160 PF00672 HAMP domain JHS79_16160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_16160 PF00512 His Kinase A (phospho-acceptor) domain JHS79_16160 PF16527 Two-component sensor protein CpxA, periplasmic domain JHS79_16165 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JHS79_16165 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JHS79_16170 PF00588 SpoU rRNA Methylase family JHS79_16175 PF04186 FxsA cytoplasmic membrane protein JHS79_16180 PF10415 Fumarase C C-terminus JHS79_16180 PF00206 Lyase JHS79_16185 PF03605 Anaerobic c4-dicarboxylate membrane transporter JHS79_16190 PF11412 Disulphide bond corrector protein DsbC JHS79_16190 PF02683 Cytochrome C biogenesis protein transmembrane region JHS79_16195 PF00196 Bacterial regulatory proteins, luxR family JHS79_16195 PF00072 Response regulator receiver domain JHS79_16200 PF03471 Transporter associated domain JHS79_16200 PF02080 TrkA-C domain JHS79_16200 PF00999 Sodium/hydrogen exchanger family JHS79_16210 PF00474 Sodium:solute symporter family JHS79_16225 PF10415 Fumarase C C-terminus JHS79_16225 PF00206 Lyase JHS79_16230 PF00072 Response regulator receiver domain JHS79_16230 PF00672 HAMP domain JHS79_16230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_16230 PF00512 His Kinase A (phospho-acceptor) domain JHS79_16230 PF01627 Hpt domain JHS79_16235 PF12832 MFS_1 like family JHS79_16250 PF16177 Acetyl-coenzyme A synthetase N-terminus JHS79_16250 PF13193 AMP-binding enzyme C-terminal domain JHS79_16250 PF00501 AMP-binding enzyme JHS79_16255 PF01220 Dehydroquinase class II JHS79_16260 PF00364 Biotin-requiring enzyme JHS79_16265 PF00289 Biotin carboxylase, N-terminal domain JHS79_16265 PF02785 Biotin carboxylase C-terminal domain JHS79_16265 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JHS79_16275 PF01207 Dihydrouridine synthase (Dus) JHS79_16280 PF02954 Bacterial regulatory protein, Fis family JHS79_16285 PF07690 Major Facilitator Superfamily JHS79_16290 PF00005 ABC transporter JHS79_16290 PF12848 ABC transporter JHS79_16295 PF05230 MASE2 domain JHS79_16295 PF00990 Diguanylate cyclase, GGDEF domain JHS79_16390 PF01276 Orn/Lys/Arg decarboxylase, major domain JHS79_16390 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain JHS79_16390 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain JHS79_16395 PF13520 Amino acid permease JHS79_16400 PF18500 CadC C-terminal domain 1 JHS79_16400 PF00486 Transcriptional regulatory protein, C terminal JHS79_16405 PF13411 MerR HTH family regulatory protein JHS79_16410 PF01808 AICARFT/IMPCHase bienzyme JHS79_16410 PF02142 MGS-like domain JHS79_16415 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain JHS79_16415 PF02843 Phosphoribosylglycinamide synthetase, C domain JHS79_16415 PF02844 Phosphoribosylglycinamide synthetase, N domain JHS79_16425 PF00216 Bacterial DNA-binding protein JHS79_16430 PF00571 CBS domain JHS79_16430 PF01595 Cyclin M transmembrane N-terminal domain JHS79_16435 PF04222 Protein of unknown function (DUF416) JHS79_16440 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JHS79_16445 PF03167 Uracil DNA glycosylase superfamily JHS79_16450 PF01208 Uroporphyrinogen decarboxylase (URO-D) JHS79_16465 PF09297 NADH pyrophosphatase zinc ribbon domain JHS79_16465 PF00293 NUDIX domain JHS79_16470 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ JHS79_16475 PF04997 RNA polymerase Rpb1, domain 1 JHS79_16475 PF00623 RNA polymerase Rpb1, domain 2 JHS79_16475 PF04983 RNA polymerase Rpb1, domain 3 JHS79_16475 PF05000 RNA polymerase Rpb1, domain 4 JHS79_16475 PF04998 RNA polymerase Rpb1, domain 5 JHS79_16480 PF04563 RNA polymerase beta subunit JHS79_16480 PF00562 RNA polymerase Rpb2, domain 6 JHS79_16480 PF04560 RNA polymerase Rpb2, domain 7 JHS79_16480 PF10385 RNA polymerase beta subunit external 1 domain JHS79_16480 PF04561 RNA polymerase Rpb2, domain 2 JHS79_16480 PF04565 RNA polymerase Rpb2, domain 3 JHS79_16485 PF00542 Ribosomal protein L7/L12 C-terminal domain JHS79_16485 PF16320 Ribosomal protein L7/L12 dimerisation domain JHS79_16490 PF00466 Ribosomal protein L10 JHS79_16495 PF00687 Ribosomal protein L1p/L10e family JHS79_16500 PF03946 Ribosomal protein L11, N-terminal domain JHS79_16500 PF00298 Ribosomal protein L11, RNA binding domain JHS79_16505 PF02357 Transcription termination factor nusG JHS79_16505 PF00467 KOW motif JHS79_16510 PF00584 SecE/Sec61-gamma subunits of protein translocation complex JHS79_16515 PF03143 Elongation factor Tu C-terminal domain JHS79_16515 PF03144 Elongation factor Tu domain 2 JHS79_16515 PF00009 Elongation factor Tu GTP binding domain JHS79_16540 PF00485 Phosphoribulokinase / Uridine kinase family JHS79_16545 PF08279 HTH domain JHS79_16545 PF02237 Biotin protein ligase C terminal domain JHS79_16545 PF03099 Biotin/lipoate A/B protein ligase family JHS79_16550 PF01565 FAD binding domain JHS79_16550 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JHS79_16560 PF13091 PLD-like domain JHS79_16590 PF01177 Asp/Glu/Hydantoin racemase JHS79_16600 PF07715 TonB-dependent Receptor Plug Domain JHS79_16600 PF00593 TonB dependent receptor JHS79_16605 PF05958 tRNA (Uracil-5-)-methyltransferase JHS79_16615 PF00440 Bacterial regulatory proteins, tetR family JHS79_16620 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JHS79_16620 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS79_16625 PF01554 MatE JHS79_16630 PF04072 Leucine carboxyl methyltransferase JHS79_16635 PF01726 LexA DNA binding domain JHS79_16635 PF00717 Peptidase S24-like JHS79_16640 PF01553 Acyltransferase JHS79_16645 PF01040 UbiA prenyltransferase family JHS79_16650 PF04345 Chorismate lyase JHS79_16655 PF03748 Flagellar basal body-associated protein FliL JHS79_16660 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease JHS79_16660 PF01694 Rhomboid family JHS79_16665 PF00581 Rhodanese-like domain JHS79_16670 PF04545 Sigma-70, region 4 JHS79_16670 PF04542 Sigma-70 region 2 JHS79_16670 PF00140 Sigma-70 factor, region 1.2 JHS79_16675 PF18075 FtsX extracellular domain JHS79_16680 PF00005 ABC transporter JHS79_16685 PF00448 SRP54-type protein, GTPase domain JHS79_16685 PF02881 SRP54-type protein, helical bundle domain JHS79_16700 PF01914 MarC family integral membrane protein JHS79_16750 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JHS79_16750 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JHS79_16755 PF01022 Bacterial regulatory protein, arsR family JHS79_16760 PF00563 EAL domain JHS79_16760 PF08668 HDOD domain JHS79_16765 PF01810 LysE type translocator JHS79_16770 PF12146 Serine aminopeptidase, S33 JHS79_16790 PF03942 DTW domain JHS79_16795 PF00990 Diguanylate cyclase, GGDEF domain JHS79_16795 PF00563 EAL domain JHS79_16795 PF08495 FIST N domain JHS79_16795 PF10442 FIST C domain JHS79_16800 PF13419 Haloacid dehalogenase-like hydrolase JHS79_16805 PF02899 Phage integrase, N-terminal SAM-like domain JHS79_16805 PF00589 Phage integrase family JHS79_16815 PF01678 Diaminopimelate epimerase JHS79_16820 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JHS79_16820 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JHS79_16830 PF01491 Frataxin-like domain JHS79_16835 PF12633 Adenylate cyclase NT domain JHS79_16835 PF01295 Adenylate cyclase, class-I JHS79_16840 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain JHS79_16840 PF03900 Porphobilinogen deaminase, C-terminal domain JHS79_16845 PF02602 Uroporphyrinogen-III synthase HemD JHS79_16850 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase JHS79_16855 PF07219 HemY protein N-terminus JHS79_16895 PF00175 Oxidoreductase NAD-binding domain JHS79_16900 PF00111 2Fe-2S iron-sulfur cluster binding domain JHS79_16905 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase JHS79_16915 PF07497 Rho termination factor, RNA-binding domain JHS79_16915 PF07498 Rho termination factor, N-terminal domain JHS79_16915 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JHS79_16920 PF00085 Thioredoxin JHS79_16925 PF00270 DEAD/DEAH box helicase JHS79_16925 PF00271 Helicase conserved C-terminal domain JHS79_16930 PF02541 Ppx/GppA phosphatase family JHS79_16935 PF02592 Putative vitamin uptake transporter JHS79_16945 PF16124 RecQ zinc-binding JHS79_16945 PF00270 DEAD/DEAH box helicase JHS79_16945 PF00271 Helicase conserved C-terminal domain JHS79_16945 PF00570 HRDC domain JHS79_16945 PF09382 RQC domain JHS79_16950 PF00892 EamA-like transporter family JHS79_16960 PF01810 LysE type translocator JHS79_16970 PF00580 UvrD/REP helicase N-terminal domain JHS79_16970 PF13361 UvrD-like helicase C-terminal domain JHS79_16980 PF05114 Protein of unknown function (DUF692) JHS79_17000 PF07690 Major Facilitator Superfamily JHS79_17005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_17005 PF03466 LysR substrate binding domain JHS79_17010 PF01321 Creatinase/Prolidase N-terminal domain JHS79_17010 PF01321 Creatinase/Prolidase N-terminal domain JHS79_17010 PF00557 Metallopeptidase family M24 JHS79_17010 PF00557 Metallopeptidase family M24 JHS79_17015 PF06968 Biotin and Thiamin Synthesis associated domain JHS79_17015 PF04055 Radical SAM superfamily JHS79_17020 PF05690 Thiazole biosynthesis protein ThiG JHS79_17030 PF00899 ThiF family JHS79_17035 PF02581 Thiamine monophosphate synthase JHS79_17040 PF01964 Radical SAM ThiC family JHS79_17040 PF13667 ThiC-associated domain JHS79_17045 PF02537 CrcB-like protein, Camphor Resistance (CrcB) JHS79_17060 PF13358 DDE superfamily endonuclease JHS79_17100 PF00132 Bacterial transferase hexapeptide (six repeats) JHS79_17105 PF07369 Protein of unknown function (DUF1488) JHS79_17110 PF01488 Shikimate / quinate 5-dehydrogenase JHS79_17110 PF08501 Shikimate dehydrogenase substrate binding domain JHS79_17110 PF18317 Shikimate 5'-dehydrogenase C-terminal domain JHS79_17115 PF01218 Coproporphyrinogen III oxidase JHS79_17120 PF01300 Telomere recombination JHS79_17125 PF00731 AIR carboxylase JHS79_17130 PF02222 ATP-grasp domain JHS79_17130 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain JHS79_17135 PF01396 Topoisomerase DNA binding C4 zinc finger JHS79_17140 PF04361 Protein of unknown function (DUF494) JHS79_17145 PF02481 DNA recombination-mediator protein A JHS79_17145 PF17782 DprA winged helix domain JHS79_17155 PF01327 Polypeptide deformylase JHS79_17160 PF00551 Formyl transferase JHS79_17160 PF02911 Formyl transferase, C-terminal domain JHS79_17165 PF01029 NusB family JHS79_17165 PF01189 16S rRNA methyltransferase RsmB/F JHS79_17170 PF02254 TrkA-N domain JHS79_17170 PF02080 TrkA-C domain JHS79_17175 PF02386 Cation transport protein JHS79_17185 PF03006 Haemolysin-III related JHS79_17190 PF07070 SpoOM protein JHS79_17200 PF06288 Protein of unknown function (DUF1040) JHS79_17205 PF13746 4Fe-4S dicluster domain JHS79_17205 PF12801 4Fe-4S binding domain JHS79_17205 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase JHS79_17210 PF01636 Phosphotransferase enzyme family JHS79_17215 PF01323 DSBA-like thioredoxin domain JHS79_17220 PF01553 Acyltransferase JHS79_17230 PF01078 Magnesium chelatase, subunit ChlI JHS79_17230 PF13335 Magnesium chelatase, subunit ChlI C-terminal JHS79_17235 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JHS79_17235 PF00205 Thiamine pyrophosphate enzyme, central domain JHS79_17235 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JHS79_17245 PF01063 Amino-transferase class IV JHS79_17250 PF00920 Dehydratase family JHS79_17255 PF00291 Pyridoxal-phosphate dependent enzyme JHS79_17255 PF00585 C-terminal regulatory domain of Threonine dehydratase JHS79_17260 PF03466 LysR substrate binding domain JHS79_17260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_17265 PF07690 Major Facilitator Superfamily JHS79_17270 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS79_17275 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_17280 PF12804 MobA-like NTP transferase domain JHS79_17280 PF00132 Bacterial transferase hexapeptide (six repeats) JHS79_17285 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain JHS79_17285 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain JHS79_17290 PF02874 ATP synthase alpha/beta family, beta-barrel domain JHS79_17290 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JHS79_17295 PF00231 ATP synthase JHS79_17300 PF00306 ATP synthase alpha/beta chain, C terminal domain JHS79_17300 PF02874 ATP synthase alpha/beta family, beta-barrel domain JHS79_17300 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JHS79_17305 PF00213 ATP synthase delta (OSCP) subunit JHS79_17310 PF00430 ATP synthase B/B' CF(0) JHS79_17315 PF00137 ATP synthase subunit C JHS79_17320 PF00119 ATP synthase A chain JHS79_17325 PF03899 ATP synthase I chain JHS79_17330 PF17762 HTH domain found in ParB protein JHS79_17330 PF02195 ParB-like nuclease domain JHS79_17335 PF13614 AAA domain JHS79_17340 PF02527 rRNA small subunit methyltransferase G JHS79_17345 PF01134 Glucose inhibited division protein A JHS79_17345 PF13932 GidA associated domain JHS79_17350 PF00258 Flavodoxin JHS79_17355 PF01926 50S ribosome-binding GTPase JHS79_17355 PF12631 MnmE helical domain JHS79_17355 PF10396 GTP-binding protein TrmE N-terminus JHS79_17360 PF02096 60Kd inner membrane protein JHS79_17360 PF14849 YidC periplasmic domain JHS79_17365 PF01809 Putative membrane protein insertion efficiency factor JHS79_17370 PF00825 Ribonuclease P JHS79_17375 PF00468 Ribosomal protein L34 JHS79_17380 PF00005 ABC transporter JHS79_17385 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_17390 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS79_17405 PF00005 ABC transporter JHS79_17405 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS79_17410 PF00005 ABC transporter JHS79_17410 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS79_17420 PF08719 Domain of unknown function (DUF1768) JHS79_17420 PF00925 GTP cyclohydrolase II JHS79_17430 PF00512 His Kinase A (phospho-acceptor) domain JHS79_17430 PF17149 Periplasmic sensor domain found in signal transduction proteins JHS79_17430 PF00072 Response regulator receiver domain JHS79_17430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_17430 PF01627 Hpt domain JHS79_17430 PF00672 HAMP domain JHS79_17440 PF01709 Transcriptional regulator JHS79_17445 PF01098 Cell cycle protein JHS79_17455 PF00005 ABC transporter JHS79_17475 PF06580 Histidine kinase JHS79_17475 PF07694 5TMR of 5TMR-LYT JHS79_17475 PF13492 GAF domain JHS79_17475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_17480 PF00072 Response regulator receiver domain JHS79_17480 PF04397 LytTr DNA-binding domain JHS79_17490 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JHS79_17495 PF00672 HAMP domain JHS79_17495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS79_17495 PF17200 Single Cache domain 2 JHS79_17510 PF00132 Bacterial transferase hexapeptide (six repeats) JHS79_17515 PF03616 Sodium/glutamate symporter JHS79_17525 PF00005 ABC transporter JHS79_17530 PF00155 Aminotransferase class I and II JHS79_17530 PF00392 Bacterial regulatory proteins, gntR family JHS79_17535 PF03616 Sodium/glutamate symporter JHS79_17545 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JHS79_17560 PF03466 LysR substrate binding domain JHS79_17560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_17565 PF02678 Pirin JHS79_17565 PF17954 Quercetinase C-terminal cupin domain JHS79_17570 PF07681 DoxX JHS79_17580 PF06029 AlkA N-terminal domain JHS79_17580 PF00730 HhH-GPD superfamily base excision DNA repair protein JHS79_17585 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JHS79_17585 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JHS79_17595 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JHS79_17605 PF03600 Citrate transporter JHS79_17625 PF08329 Chitinase A, N-terminal domain JHS79_17625 PF00704 Glycosyl hydrolases family 18 JHS79_17635 PF06865 Pyrimidine/purine nucleoside phosphorylase JHS79_17645 PF00563 EAL domain JHS79_17645 PF00990 Diguanylate cyclase, GGDEF domain JHS79_17650 PF01554 MatE JHS79_17655 PF00849 RNA pseudouridylate synthase JHS79_17670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_17670 PF03466 LysR substrate binding domain JHS79_17685 PF17152 Periplasmic sensor domain JHS79_17685 PF00990 Diguanylate cyclase, GGDEF domain JHS79_17695 PF00756 Putative esterase JHS79_17700 PF00107 Zinc-binding dehydrogenase JHS79_17700 PF08240 Alcohol dehydrogenase GroES-like domain JHS79_17705 PF00797 N-acetyltransferase JHS79_17710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_17710 PF03466 LysR substrate binding domain JHS79_17725 PF09339 IclR helix-turn-helix domain JHS79_17725 PF01614 Bacterial transcriptional regulator JHS79_17735 PF10688 Bacterial inner membrane protein JHS79_17740 PF07883 Cupin domain JHS79_17755 PF00294 pfkB family carbohydrate kinase JHS79_17760 PF01081 KDPG and KHG aldolase JHS79_17775 PF13229 Right handed beta helix region JHS79_17780 PF00474 Sodium:solute symporter family JHS79_17785 PF14583 Oligogalacturonate lyase JHS79_17790 PF04954 Siderophore-interacting protein JHS79_17790 PF08021 Siderophore-interacting FAD-binding domain JHS79_17795 PF01810 LysE type translocator JHS79_17800 PF01037 Lrp/AsnC ligand binding domain JHS79_17805 PF18416 N-acetylglucosamine binding protein domain 2 JHS79_17805 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading JHS79_17820 PF13599 Pentapeptide repeats (9 copies) JHS79_17825 PF03922 OmpW family JHS79_17830 PF13533 Biotin-lipoyl like JHS79_17835 PF07690 Major Facilitator Superfamily JHS79_17845 PF12706 Beta-lactamase superfamily domain JHS79_17855 PF01204 Trehalase JHS79_17860 PF01661 Macro domain JHS79_17865 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JHS79_17870 PF03466 LysR substrate binding domain JHS79_17870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_17880 PF03466 LysR substrate binding domain JHS79_17880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_17895 PF13419 Haloacid dehalogenase-like hydrolase JHS79_17920 PF05651 Putative sugar diacid recognition JHS79_17920 PF17853 GGDEF-like domain JHS79_17920 PF13556 PucR C-terminal helix-turn-helix domain JHS79_17925 PF02447 GntP family permease JHS79_17930 PF02595 Glycerate kinase family JHS79_17935 PF00392 Bacterial regulatory proteins, gntR family JHS79_17935 PF00155 Aminotransferase class I and II JHS79_17955 PF00583 Acetyltransferase (GNAT) family JHS79_17980 PF03264 NapC/NirT cytochrome c family, N-terminal region JHS79_17995 PF02581 Thiamine monophosphate synthase JHS79_18000 PF02110 Hydroxyethylthiazole kinase family JHS79_18005 PF03070 TENA/THI-4/PQQC family JHS79_18010 PF09084 NMT1/THI5 like JHS79_18015 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_18020 PF00005 ABC transporter JHS79_18025 PF08543 Phosphomethylpyrimidine kinase JHS79_18030 PF01523 Putative modulator of DNA gyrase JHS79_18035 PF01523 Putative modulator of DNA gyrase JHS79_18040 PF04013 Putative SAM-dependent RNA methyltransferase JHS79_18100 PF00589 Phage integrase family JHS79_18100 PF12167 Arm DNA-binding domain JHS79_18130 PF10928 Protein of unknown function (DUF2810) JHS79_18135 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JHS79_18135 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JHS79_18145 PF03009 Glycerophosphoryl diester phosphodiesterase family JHS79_18150 PF00056 lactate/malate dehydrogenase, NAD binding domain JHS79_18150 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JHS79_18155 PF00072 Response regulator receiver domain JHS79_18155 PF00486 Transcriptional regulatory protein, C terminal JHS79_18160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_18160 PF00672 HAMP domain JHS79_18160 PF16750 Sensor domain of 2-component histidine kinase JHS79_18160 PF00512 His Kinase A (phospho-acceptor) domain JHS79_18165 PF00593 TonB dependent receptor JHS79_18165 PF07715 TonB-dependent Receptor Plug Domain JHS79_18175 PF01618 MotA/TolQ/ExbB proton channel family JHS79_18180 PF01618 MotA/TolQ/ExbB proton channel family JHS79_18185 PF02472 Biopolymer transport protein ExbD/TolR JHS79_18230 PF01297 Zinc-uptake complex component A periplasmic JHS79_18235 PF00005 ABC transporter JHS79_18240 PF00950 ABC 3 transport family JHS79_18255 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JHS79_18255 PF00326 Prolyl oligopeptidase family JHS79_18260 PF07690 Major Facilitator Superfamily JHS79_18265 PF00491 Arginase family JHS79_18270 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JHS79_18270 PF17944 Arginine decarboxylase C-terminal helical extension JHS79_18270 PF17810 Arginine decarboxylase helical bundle domain JHS79_18275 PF00753 Metallo-beta-lactamase superfamily JHS79_18280 PF08443 RimK-like ATP-grasp domain JHS79_18280 PF18030 RimK PreATP-grasp domain JHS79_18285 PF08443 RimK-like ATP-grasp domain JHS79_18285 PF18030 RimK PreATP-grasp domain JHS79_18290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_18290 PF03466 LysR substrate binding domain JHS79_18315 PF00232 Glycosyl hydrolase family 1 JHS79_18320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_18320 PF00512 His Kinase A (phospho-acceptor) domain JHS79_18325 PF02954 Bacterial regulatory protein, Fis family JHS79_18325 PF00072 Response regulator receiver domain JHS79_18325 PF00158 Sigma-54 interaction domain JHS79_18330 PF08448 PAS fold JHS79_18330 PF00990 Diguanylate cyclase, GGDEF domain JHS79_18335 PF05525 Branched-chain amino acid transport protein JHS79_18350 PF01266 FAD dependent oxidoreductase JHS79_18360 PF01212 Beta-eliminating lyase JHS79_18375 PF07670 Nucleoside recognition JHS79_18375 PF01773 Na+ dependent nucleoside transporter N-terminus JHS79_18375 PF07662 Na+ dependent nucleoside transporter C-terminus JHS79_18385 PF13532 2OG-Fe(II) oxygenase superfamily JHS79_18390 PF05230 MASE2 domain JHS79_18390 PF00990 Diguanylate cyclase, GGDEF domain JHS79_18395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS79_18395 PF00672 HAMP domain JHS79_18395 PF12729 Four helix bundle sensory module for signal transduction JHS79_18410 PF00990 Diguanylate cyclase, GGDEF domain JHS79_18415 PF00875 DNA photolyase JHS79_18415 PF03441 FAD binding domain of DNA photolyase JHS79_18420 PF04244 Deoxyribodipyrimidine photo-lyase-related protein JHS79_18425 PF00919 Uncharacterized protein family UPF0004 JHS79_18425 PF04055 Radical SAM superfamily JHS79_18435 PF01625 Peptide methionine sulfoxide reductase JHS79_18435 PF01641 SelR domain JHS79_18440 PF02566 OsmC-like protein JHS79_18445 PF12464 Maltose acetyltransferase JHS79_18445 PF14602 Hexapeptide repeat of succinyl-transferase JHS79_18480 PF03466 LysR substrate binding domain JHS79_18480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_18485 PF13419 Haloacid dehalogenase-like hydrolase JHS79_18500 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) JHS79_18505 PF00194 Eukaryotic-type carbonic anhydrase JHS79_18510 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JHS79_18515 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS79_18520 PF12704 MacB-like periplasmic core domain JHS79_18520 PF02687 FtsX-like permease family JHS79_18520 PF00005 ABC transporter JHS79_18525 PF02321 Outer membrane efflux protein JHS79_18530 PF00657 GDSL-like Lipase/Acylhydrolase JHS79_18535 PF00082 Subtilase family JHS79_18535 PF05922 Peptidase inhibitor I9 JHS79_18545 PF03611 PTS system sugar-specific permease component JHS79_18555 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JHS79_18560 PF00356 Bacterial regulatory proteins, lacI family JHS79_18565 PF13419 Haloacid dehalogenase-like hydrolase JHS79_18570 PF00202 Aminotransferase class-III JHS79_18575 PF00266 Aminotransferase class-V JHS79_18585 PF00005 ABC transporter JHS79_18590 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_18595 PF07702 UTRA domain JHS79_18595 PF00392 Bacterial regulatory proteins, gntR family JHS79_18610 PF04393 Protein of unknown function (DUF535) JHS79_18615 PF01266 FAD dependent oxidoreductase JHS79_18620 PF00246 Zinc carboxypeptidase JHS79_18620 PF18027 Cytosolic carboxypeptidase N-terminal domain JHS79_18625 PF01389 OmpA-like transmembrane domain JHS79_18625 PF00691 OmpA family JHS79_18630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_18630 PF03466 LysR substrate binding domain JHS79_18640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_18640 PF03466 LysR substrate binding domain JHS79_18650 PF00854 POT family JHS79_18655 PF03315 Serine dehydratase beta chain JHS79_18655 PF03313 Serine dehydratase alpha chain JHS79_18675 PF00133 tRNA synthetases class I (I, L, M and V) JHS79_18675 PF08264 Anticodon-binding domain of tRNA JHS79_18680 PF01464 Transglycosylase SLT domain JHS79_18700 PF00460 Flagella basal body rod protein JHS79_18705 PF00460 Flagella basal body rod protein JHS79_18705 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JHS79_18710 PF13861 FlgD Tudor-like domain JHS79_18710 PF13860 FlgD Ig-like domain JHS79_18710 PF03963 Flagellar hook capping protein - N-terminal region JHS79_18715 PF00460 Flagella basal body rod protein JHS79_18715 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JHS79_18715 PF07559 Flagellar basal body protein FlaE JHS79_18720 PF00460 Flagella basal body rod protein JHS79_18720 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JHS79_18725 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JHS79_18725 PF00460 Flagella basal body rod protein JHS79_18730 PF02107 Flagellar L-ring protein JHS79_18735 PF02119 Flagellar P-ring protein JHS79_18740 PF10135 Rod binding protein JHS79_18740 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JHS79_18745 PF00460 Flagella basal body rod protein JHS79_18745 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JHS79_18770 PF01070 FMN-dependent dehydrogenase JHS79_18785 PF00581 Rhodanese-like domain JHS79_18790 PF00166 Chaperonin 10 Kd subunit JHS79_18795 PF00118 TCP-1/cpn60 chaperonin family JHS79_18810 PF01810 LysE type translocator JHS79_18815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_18815 PF03466 LysR substrate binding domain JHS79_18830 PF00440 Bacterial regulatory proteins, tetR family JHS79_18830 PF08359 YsiA-like protein, C-terminal region JHS79_18840 PF00149 Calcineurin-like phosphoesterase JHS79_18840 PF02872 5'-nucleotidase, C-terminal domain JHS79_18845 PF03060 Nitronate monooxygenase JHS79_18850 PF07971 Glycosyl hydrolase family 92 JHS79_18850 PF17678 Glycosyl hydrolase family 92 N-terminal domain JHS79_18855 PF07971 Glycosyl hydrolase family 92 JHS79_18855 PF17678 Glycosyl hydrolase family 92 N-terminal domain JHS79_18865 PF07971 Glycosyl hydrolase family 92 JHS79_18865 PF17678 Glycosyl hydrolase family 92 N-terminal domain JHS79_18870 PF17678 Glycosyl hydrolase family 92 N-terminal domain JHS79_18870 PF07971 Glycosyl hydrolase family 92 JHS79_18885 PF01641 SelR domain JHS79_18885 PF01625 Peptide methionine sulfoxide reductase JHS79_18890 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JHS79_18895 PF00455 DeoR C terminal sensor domain JHS79_18895 PF08220 DeoR-like helix-turn-helix domain JHS79_18905 PF06628 Catalase-related immune-responsive JHS79_18905 PF00199 Catalase JHS79_18915 PF00857 Isochorismatase family JHS79_18925 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family JHS79_18925 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain JHS79_18950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_18950 PF03466 LysR substrate binding domain JHS79_18955 PF01389 OmpA-like transmembrane domain JHS79_18955 PF00691 OmpA family JHS79_18965 PF06629 MltA-interacting protein MipA JHS79_18970 PF17185 NlpE C-terminal OB domain JHS79_18970 PF04170 NlpE N-terminal domain JHS79_18975 PF02001 Protein of unknown function DUF134 JHS79_19000 PF14492 Elongation Factor G, domain II JHS79_19000 PF00679 Elongation factor G C-terminus JHS79_19000 PF03764 Elongation factor G, domain IV JHS79_19000 PF00009 Elongation factor Tu GTP binding domain JHS79_19000 PF03144 Elongation factor Tu domain 2 JHS79_19005 PF13378 Enolase C-terminal domain-like JHS79_19005 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JHS79_19015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_19015 PF03466 LysR substrate binding domain JHS79_19025 PF09278 MerR, DNA binding JHS79_19025 PF00376 MerR family regulatory protein JHS79_19050 PF13091 PLD-like domain JHS79_19055 PF13533 Biotin-lipoyl like JHS79_19060 PF00873 AcrB/AcrD/AcrF family JHS79_19095 PF00005 ABC transporter JHS79_19095 PF08402 TOBE domain JHS79_19120 PF07702 UTRA domain JHS79_19120 PF00392 Bacterial regulatory proteins, gntR family JHS79_19125 PF02028 BCCT, betaine/carnitine/choline family transporter JHS79_19130 PF02837 Glycosyl hydrolases family 2, sugar binding domain JHS79_19130 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JHS79_19130 PF00703 Glycosyl hydrolases family 2 JHS79_19130 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 JHS79_19135 PF00196 Bacterial regulatory proteins, luxR family JHS79_19145 PF00990 Diguanylate cyclase, GGDEF domain JHS79_19145 PF07694 5TMR of 5TMR-LYT JHS79_19160 PF00873 AcrB/AcrD/AcrF family JHS79_19165 PF13533 Biotin-lipoyl like JHS79_19170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_19170 PF03466 LysR substrate binding domain JHS79_19180 PF13416 Bacterial extracellular solute-binding protein JHS79_19185 PF00579 tRNA synthetases class I (W and Y) JHS79_19200 PF00391 PEP-utilising enzyme, mobile domain JHS79_19200 PF02896 PEP-utilising enzyme, TIM barrel domain JHS79_19200 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JHS79_19205 PF03618 Kinase/pyrophosphorylase JHS79_19210 PF00710 Asparaginase, N-terminal JHS79_19210 PF17763 Glutaminase/Asparaginase C-terminal domain JHS79_19215 PF00709 Adenylosuccinate synthetase JHS79_19220 PF03466 LysR substrate binding domain JHS79_19220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_19235 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) JHS79_19240 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JHS79_19240 PF12833 Helix-turn-helix domain JHS79_19255 PF08240 Alcohol dehydrogenase GroES-like domain JHS79_19255 PF00107 Zinc-binding dehydrogenase JHS79_19260 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JHS79_19270 PF03466 LysR substrate binding domain JHS79_19270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_19275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_19275 PF03466 LysR substrate binding domain JHS79_19285 PF00271 Helicase conserved C-terminal domain JHS79_19285 PF00270 DEAD/DEAH box helicase JHS79_19310 PF00155 Aminotransferase class I and II JHS79_19315 PF12833 Helix-turn-helix domain JHS79_19315 PF01497 Periplasmic binding protein JHS79_19360 PF01872 RibD C-terminal domain JHS79_19365 PF02909 Tetracyclin repressor-like, C-terminal domain JHS79_19365 PF00440 Bacterial regulatory proteins, tetR family JHS79_19370 PF02798 Glutathione S-transferase, N-terminal domain JHS79_19375 PF00768 D-alanyl-D-alanine carboxypeptidase JHS79_19375 PF07943 Penicillin-binding protein 5, C-terminal domain JHS79_19385 PF00462 Glutaredoxin JHS79_19385 PF08534 Redoxin JHS79_19390 PF00962 Adenosine/AMP deaminase JHS79_19405 PF00313 'Cold-shock' DNA-binding domain JHS79_19410 PF02678 Pirin JHS79_19410 PF05726 Pirin C-terminal cupin domain JHS79_19415 PF01734 Patatin-like phospholipase JHS79_19425 PF01047 MarR family JHS79_19440 PF07690 Major Facilitator Superfamily JHS79_19450 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JHS79_19455 PF08019 Phosphoethanolamine transferase EptA/EptB JHS79_19455 PF00884 Sulfatase JHS79_19460 PF01219 Prokaryotic diacylglycerol kinase JHS79_19470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_19470 PF00672 HAMP domain JHS79_19470 PF00512 His Kinase A (phospho-acceptor) domain JHS79_19475 PF00072 Response regulator receiver domain JHS79_19475 PF00486 Transcriptional regulatory protein, C terminal JHS79_19480 PF00106 short chain dehydrogenase JHS79_19495 PF01323 DSBA-like thioredoxin domain JHS79_19510 PF00255 Glutathione peroxidase JHS79_19515 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JHS79_19525 PF07690 Major Facilitator Superfamily JHS79_19535 PF01966 HD domain JHS79_19545 PF07969 Amidohydrolase family JHS79_19550 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin JHS79_19555 PF03448 MgtE intracellular N domain JHS79_19555 PF01769 Divalent cation transporter JHS79_19555 PF00571 CBS domain JHS79_19560 PF03109 ABC1 family JHS79_19570 PF00155 Aminotransferase class I and II JHS79_19570 PF00392 Bacterial regulatory proteins, gntR family JHS79_19575 PF13520 Amino acid permease JHS79_19580 PF01037 Lrp/AsnC ligand binding domain JHS79_19580 PF13404 AsnC-type helix-turn-helix domain JHS79_19585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_19585 PF03466 LysR substrate binding domain JHS79_19600 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JHS79_19600 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JHS79_19610 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JHS79_19615 PF01554 MatE JHS79_19620 PF04363 Protein of unknown function (DUF496) JHS79_19630 PF04337 Protein of unknown function, DUF480 JHS79_19635 PF01541 GIY-YIG catalytic domain JHS79_19640 PF13407 Periplasmic binding protein domain JHS79_19645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_19645 PF00512 His Kinase A (phospho-acceptor) domain JHS79_19645 PF00072 Response regulator receiver domain JHS79_19645 PF09308 LuxQ, periplasmic JHS79_19655 PF00529 HlyD membrane-fusion protein of T1SS JHS79_19655 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS79_19675 PF01037 Lrp/AsnC ligand binding domain JHS79_19700 PF07549 SecD/SecF GG Motif JHS79_19700 PF13721 SecD export protein N-terminal TM region JHS79_19700 PF02355 Protein export membrane protein JHS79_19705 PF02355 Protein export membrane protein JHS79_19705 PF07549 SecD/SecF GG Motif JHS79_19715 PF01810 LysE type translocator JHS79_19725 PF02803 Thiolase, C-terminal domain JHS79_19725 PF00108 Thiolase, N-terminal domain JHS79_19735 PF00561 alpha/beta hydrolase fold JHS79_19735 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus JHS79_19745 PF03264 NapC/NirT cytochrome c family, N-terminal region JHS79_19750 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) JHS79_19755 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JHS79_19755 PF00384 Molybdopterin oxidoreductase JHS79_19755 PF01568 Molydopterin dinucleotide binding domain JHS79_19765 PF12838 4Fe-4S dicluster domain JHS79_19765 PF13187 4Fe-4S dicluster domain JHS79_19770 PF00672 HAMP domain JHS79_19770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_19770 PF07730 Histidine kinase JHS79_19770 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term JHS79_19775 PF00196 Bacterial regulatory proteins, luxR family JHS79_19775 PF00072 Response regulator receiver domain JHS79_19790 PF01546 Peptidase family M20/M25/M40 JHS79_19790 PF07687 Peptidase dimerisation domain JHS79_19795 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JHS79_19800 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS79_19805 PF00873 AcrB/AcrD/AcrF family JHS79_19810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS79_19810 PF00672 HAMP domain JHS79_19810 PF12729 Four helix bundle sensory module for signal transduction JHS79_19815 PF00472 RF-1 domain JHS79_19820 PF13419 Haloacid dehalogenase-like hydrolase JHS79_19825 PF00691 OmpA family JHS79_19825 PF01389 OmpA-like transmembrane domain JHS79_19830 PF00793 DAHP synthetase I family JHS79_19835 PF07690 Major Facilitator Superfamily JHS79_19840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS79_19840 PF08447 PAS fold JHS79_19845 PF02779 Transketolase, pyrimidine binding domain JHS79_19845 PF02780 Transketolase, C-terminal domain JHS79_19845 PF00456 Transketolase, thiamine diphosphate binding domain JHS79_19850 PF00923 Transaldolase/Fructose-6-phosphate aldolase JHS79_19860 PF00704 Glycosyl hydrolases family 18 JHS79_19860 PF08329 Chitinase A, N-terminal domain JHS79_19865 PF03707 Bacterial signalling protein N terminal repeat JHS79_19865 PF00563 EAL domain JHS79_19865 PF00990 Diguanylate cyclase, GGDEF domain JHS79_19870 PF00581 Rhodanese-like domain JHS79_19890 PF00899 ThiF family JHS79_19895 PF03453 MoeA N-terminal region (domain I and II) JHS79_19895 PF03454 MoeA C-terminal region (domain IV) JHS79_19895 PF00994 Probable molybdopterin binding domain JHS79_19900 PF01227 GTP cyclohydrolase I JHS79_19905 PF01566 Natural resistance-associated macrophage protein JHS79_19915 PF00654 Voltage gated chloride channel JHS79_19930 PF00248 Aldo/keto reductase family JHS79_19935 PF00072 Response regulator receiver domain JHS79_19945 PF01256 Carbohydrate kinase JHS79_19945 PF03853 YjeF-related protein N-terminus JHS79_19950 PF00478 IMP dehydrogenase / GMP reductase domain JHS79_19955 PF13193 AMP-binding enzyme C-terminal domain JHS79_19955 PF00501 AMP-binding enzyme JHS79_19960 PF01012 Electron transfer flavoprotein domain JHS79_19960 PF00766 Electron transfer flavoprotein FAD-binding domain JHS79_19965 PF01012 Electron transfer flavoprotein domain JHS79_19975 PF12399 Branched-chain amino acid ATP-binding cassette transporter JHS79_19975 PF00005 ABC transporter JHS79_20000 PF00005 ABC transporter JHS79_20005 PF14535 AMP-binding enzyme C-terminal domain JHS79_20005 PF00501 AMP-binding enzyme JHS79_20020 PF00034 Cytochrome c JHS79_20030 PF13411 MerR HTH family regulatory protein JHS79_20035 PF02627 Carboxymuconolactone decarboxylase family JHS79_20040 PF02567 Phenazine biosynthesis-like protein JHS79_20050 PF02322 Cytochrome bd terminal oxidase subunit II JHS79_20055 PF01654 Cytochrome bd terminal oxidase subunit I JHS79_20060 PF00392 Bacterial regulatory proteins, gntR family JHS79_20060 PF00155 Aminotransferase class I and II JHS79_20065 PF14602 Hexapeptide repeat of succinyl-transferase JHS79_20065 PF12464 Maltose acetyltransferase JHS79_20070 PF12794 Mechanosensitive ion channel inner membrane domain 1 JHS79_20070 PF12795 Mechanosensitive ion channel porin domain JHS79_20070 PF00924 Mechanosensitive ion channel JHS79_20085 PF00672 HAMP domain JHS79_20085 PF00512 His Kinase A (phospho-acceptor) domain JHS79_20085 PF01627 Hpt domain JHS79_20085 PF00072 Response regulator receiver domain JHS79_20085 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JHS79_20085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_20090 PF00682 HMGL-like JHS79_20095 PF18140 Propionyl-coenzyme A carboxylase BT domain JHS79_20095 PF00364 Biotin-requiring enzyme JHS79_20095 PF02785 Biotin carboxylase C-terminal domain JHS79_20095 PF00289 Biotin carboxylase, N-terminal domain JHS79_20095 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JHS79_20100 PF00378 Enoyl-CoA hydratase/isomerase JHS79_20105 PF01039 Carboxyl transferase domain JHS79_20110 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JHS79_20110 PF02770 Acyl-CoA dehydrogenase, middle domain JHS79_20110 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JHS79_20115 PF09278 MerR, DNA binding JHS79_20115 PF00376 MerR family regulatory protein JHS79_20120 PF02803 Thiolase, C-terminal domain JHS79_20120 PF00108 Thiolase, N-terminal domain JHS79_20125 PF00171 Aldehyde dehydrogenase family JHS79_20130 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JHS79_20130 PF02770 Acyl-CoA dehydrogenase, middle domain JHS79_20130 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JHS79_20135 PF00378 Enoyl-CoA hydratase/isomerase JHS79_20145 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JHS79_20145 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JHS79_20155 PF17151 Periplasmic sensor domain JHS79_20155 PF00990 Diguanylate cyclase, GGDEF domain JHS79_20160 PF13977 BetI-type transcriptional repressor, C-terminal JHS79_20160 PF00440 Bacterial regulatory proteins, tetR family JHS79_20165 PF00171 Aldehyde dehydrogenase family JHS79_20170 PF00732 GMC oxidoreductase JHS79_20170 PF05199 GMC oxidoreductase JHS79_20175 PF04069 Substrate binding domain of ABC-type glycine betaine transport system JHS79_20180 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_20185 PF00571 CBS domain JHS79_20185 PF00005 ABC transporter JHS79_20190 PF00881 Nitroreductase family JHS79_20200 PF01145 SPFH domain / Band 7 family JHS79_20200 PF16200 C-terminal region of band_7 JHS79_20210 PF00563 EAL domain JHS79_20210 PF00990 Diguanylate cyclase, GGDEF domain JHS79_20210 PF03707 Bacterial signalling protein N terminal repeat JHS79_20210 PF13188 PAS domain JHS79_20215 PF03150 Di-haem cytochrome c peroxidase JHS79_20215 PF00034 Cytochrome c JHS79_20220 PF00072 Response regulator receiver domain JHS79_20220 PF09308 LuxQ, periplasmic JHS79_20220 PF00512 His Kinase A (phospho-acceptor) domain JHS79_20220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_20235 PF04116 Fatty acid hydroxylase superfamily JHS79_20275 PF01048 Phosphorylase superfamily JHS79_20280 PF00563 EAL domain JHS79_20280 PF00990 Diguanylate cyclase, GGDEF domain JHS79_20285 PF05025 RbsD / FucU transport protein family JHS79_20290 PF00005 ABC transporter JHS79_20295 PF02653 Branched-chain amino acid transport system / permease component JHS79_20300 PF13407 Periplasmic binding protein domain JHS79_20305 PF00294 pfkB family carbohydrate kinase JHS79_20310 PF00356 Bacterial regulatory proteins, lacI family JHS79_20320 PF04973 Nicotinamide mononucleotide transporter JHS79_20325 PF01048 Phosphorylase superfamily JHS79_20335 PF01497 Periplasmic binding protein JHS79_20340 PF01032 FecCD transport family JHS79_20345 PF01032 FecCD transport family JHS79_20350 PF00005 ABC transporter JHS79_20355 PF13411 MerR HTH family regulatory protein JHS79_20365 PF00593 TonB dependent receptor JHS79_20365 PF07715 TonB-dependent Receptor Plug Domain JHS79_20395 PF12805 FUSC-like inner membrane protein yccS JHS79_20400 PF00580 UvrD/REP helicase N-terminal domain JHS79_20400 PF13361 UvrD-like helicase C-terminal domain JHS79_20400 PF12462 DNA helicase IV / RNA helicase N terminal JHS79_20405 PF02142 MGS-like domain JHS79_20410 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JHS79_20415 PF00072 Response regulator receiver domain JHS79_20415 PF01627 Hpt domain JHS79_20415 PF00512 His Kinase A (phospho-acceptor) domain JHS79_20415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_20415 PF00672 HAMP domain JHS79_20430 PF00072 Response regulator receiver domain JHS79_20430 PF00486 Transcriptional regulatory protein, C terminal JHS79_20435 PF16385 Domain of unknown function JHS79_20435 PF00884 Sulfatase JHS79_20440 PF00884 Sulfatase JHS79_20450 PF03466 LysR substrate binding domain JHS79_20450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_20455 PF00884 Sulfatase JHS79_20460 PF04055 Radical SAM superfamily JHS79_20460 PF13186 Iron-sulfur cluster-binding domain JHS79_20465 PF07726 ATPase family associated with various cellular activities (AAA) JHS79_20465 PF17863 AAA lid domain JHS79_20480 PF00092 von Willebrand factor type A domain JHS79_20495 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JHS79_20495 PF01872 RibD C-terminal domain JHS79_20500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_20500 PF03466 LysR substrate binding domain JHS79_20505 PF00781 Diacylglycerol kinase catalytic domain JHS79_20510 PF04076 Bacterial OB fold (BOF) protein JHS79_20525 PF04055 Radical SAM superfamily JHS79_20525 PF13186 Iron-sulfur cluster-binding domain JHS79_20535 PF18081 Fanconi anemia-associated nuclease SAP domain JHS79_20535 PF08774 VRR-NUC domain JHS79_20550 PF01435 Peptidase family M48 JHS79_20555 PF04011 LemA family JHS79_20560 PF03606 C4-dicarboxylate anaerobic carrier JHS79_20570 PF00583 Acetyltransferase (GNAT) family JHS79_20570 PF00814 Glycoprotease family JHS79_20585 PF04151 Bacterial pre-peptidase C-terminal domain JHS79_20585 PF03413 Peptidase propeptide and YPEB domain JHS79_20585 PF01447 Thermolysin metallopeptidase, catalytic domain JHS79_20585 PF07504 Fungalysin/Thermolysin Propeptide Motif JHS79_20585 PF02868 Thermolysin metallopeptidase, alpha-helical domain JHS79_20590 PF00893 Small Multidrug Resistance protein JHS79_20595 PF00892 EamA-like transporter family JHS79_20615 PF00171 Aldehyde dehydrogenase family JHS79_20620 PF00939 Sodium:sulfate symporter transmembrane region JHS79_20625 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain JHS79_20625 PF17203 Single cache domain 3 JHS79_20625 PF00989 PAS fold JHS79_20625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_20630 PF12431 Transcriptional regulator JHS79_20630 PF00072 Response regulator receiver domain JHS79_20640 PF13187 4Fe-4S dicluster domain JHS79_20640 PF01645 Conserved region in glutamate synthase JHS79_20645 PF00141 Peroxidase JHS79_20650 PF09722 Protein of unknown function (DUF2384) JHS79_20660 PF01757 Acyltransferase family JHS79_20670 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JHS79_20675 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JHS79_20695 PF01769 Divalent cation transporter JHS79_20695 PF03448 MgtE intracellular N domain JHS79_20695 PF00571 CBS domain JHS79_20725 PF01327 Polypeptide deformylase JHS79_20730 PF00376 MerR family regulatory protein JHS79_20730 PF09278 MerR, DNA binding JHS79_20740 PF02253 Phospholipase A1 JHS79_20760 PF00664 ABC transporter transmembrane region JHS79_20760 PF00005 ABC transporter JHS79_20770 PF11490 DNA polymerase III polC-type N-terminus II JHS79_20770 PF07733 Bacterial DNA polymerase III alpha NTPase domain JHS79_20770 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JHS79_20770 PF14579 Helix-hairpin-helix motif JHS79_20770 PF02811 PHP domain JHS79_20770 PF00929 Exonuclease JHS79_20775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_20775 PF03466 LysR substrate binding domain JHS79_20780 PF01039 Carboxyl transferase domain JHS79_20780 PF17848 Acetyl-coA carboxylase zinc finger domain JHS79_20815 PF02311 AraC-like ligand binding domain JHS79_20815 PF12833 Helix-turn-helix domain JHS79_20830 PF02347 Glycine cleavage system P-protein JHS79_20835 PF01597 Glycine cleavage H-protein JHS79_20840 PF00464 Serine hydroxymethyltransferase JHS79_20850 PF08669 Glycine cleavage T-protein C-terminal barrel domain JHS79_20850 PF01571 Aminomethyltransferase folate-binding domain JHS79_20870 PF00873 AcrB/AcrD/AcrF family JHS79_20880 PF02378 Phosphotransferase system, EIIC JHS79_20880 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JHS79_20885 PF00294 pfkB family carbohydrate kinase JHS79_20890 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JHS79_20890 PF00381 PTS HPr component phosphorylation site JHS79_20895 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JHS79_20895 PF00356 Bacterial regulatory proteins, lacI family JHS79_20910 PF00990 Diguanylate cyclase, GGDEF domain JHS79_20910 PF00989 PAS fold JHS79_20910 PF00563 EAL domain JHS79_20910 PF01590 GAF domain JHS79_20915 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_20920 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS79_20925 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_20930 PF00005 ABC transporter JHS79_20935 PF00224 Pyruvate kinase, barrel domain JHS79_20935 PF02887 Pyruvate kinase, alpha/beta domain JHS79_20940 PF07690 Major Facilitator Superfamily JHS79_20950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_20950 PF00512 His Kinase A (phospho-acceptor) domain JHS79_20950 PF00672 HAMP domain JHS79_20955 PF14532 Sigma-54 interaction domain JHS79_20955 PF02954 Bacterial regulatory protein, Fis family JHS79_20955 PF00072 Response regulator receiver domain JHS79_20965 PF00465 Iron-containing alcohol dehydrogenase JHS79_20970 PF06719 AraC-type transcriptional regulator N-terminus JHS79_20970 PF12833 Helix-turn-helix domain JHS79_20975 PF06483 Chitinase C JHS79_20975 PF00704 Glycosyl hydrolases family 18 JHS79_20980 PF00483 Nucleotidyl transferase JHS79_20985 PF01268 Formate--tetrahydrofolate ligase JHS79_20990 PF00294 pfkB family carbohydrate kinase JHS79_21005 PF11849 Domain of unknown function (DUF3369) JHS79_21010 PF13419 Haloacid dehalogenase-like hydrolase JHS79_21015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS79_21015 PF00672 HAMP domain JHS79_21020 PF04336 Acyl carrier protein phosphodiesterase JHS79_21025 PF00271 Helicase conserved C-terminal domain JHS79_21025 PF00270 DEAD/DEAH box helicase JHS79_21030 PF12792 CSS motif domain associated with EAL JHS79_21030 PF00563 EAL domain JHS79_21045 PF01292 Prokaryotic cytochrome b561 JHS79_21050 PF04264 YceI-like domain JHS79_21055 PF01226 Formate/nitrite transporter JHS79_21060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_21060 PF03466 LysR substrate binding domain JHS79_21065 PF06496 Protein of unknown function (DUF1097) JHS79_21070 PF11398 Protein of unknown function (DUF2813) JHS79_21075 PF02872 5'-nucleotidase, C-terminal domain JHS79_21075 PF00149 Calcineurin-like phosphoesterase JHS79_21080 PF03741 Integral membrane protein TerC family JHS79_21095 PF12262 Bacterial virulence factor lipase N-terminal JHS79_21100 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JHS79_21115 PF03061 Thioesterase superfamily JHS79_21125 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JHS79_21125 PF12793 Sugar transport-related sRNA regulator N-term JHS79_21150 PF01556 DnaJ C terminal domain JHS79_21150 PF00226 DnaJ domain JHS79_21150 PF00684 DnaJ central domain JHS79_21160 PF00990 Diguanylate cyclase, GGDEF domain JHS79_21160 PF03707 Bacterial signalling protein N terminal repeat JHS79_21160 PF13188 PAS domain JHS79_21160 PF00563 EAL domain JHS79_21165 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase JHS79_21165 PF07055 Enoyl reductase FAD binding domain JHS79_21165 PF12241 Trans-2-enoyl-CoA reductase catalytic region JHS79_21170 PF13472 GDSL-like Lipase/Acylhydrolase family JHS79_21175 PF00005 ABC transporter JHS79_21190 PF02626 Carboxyltransferase domain, subdomain A and B JHS79_21195 PF02682 Carboxyltransferase domain, subdomain C and D JHS79_21200 PF03746 LamB/YcsF family JHS79_21205 PF08448 PAS fold JHS79_21205 PF13426 PAS domain JHS79_21205 PF00563 EAL domain JHS79_21205 PF00990 Diguanylate cyclase, GGDEF domain JHS79_21205 PF08447 PAS fold JHS79_21205 PF05231 MASE1 JHS79_21210 PF16363 GDP-mannose 4,6 dehydratase JHS79_21215 PF00593 TonB dependent receptor JHS79_21215 PF07715 TonB-dependent Receptor Plug Domain JHS79_21220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_21220 PF03466 LysR substrate binding domain JHS79_21225 PF00583 Acetyltransferase (GNAT) family JHS79_21225 PF13380 CoA binding domain JHS79_21225 PF13607 Succinyl-CoA ligase like flavodoxin domain JHS79_21235 PF01820 D-ala D-ala ligase N-terminus JHS79_21235 PF07478 D-ala D-ala ligase C-terminus JHS79_21245 PF01253 Translation initiation factor SUI1 JHS79_21560 PF03466 LysR substrate binding domain JHS79_21560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_21570 PF00582 Universal stress protein family JHS79_21575 PF03701 Uncharacterised protein family (UPF0181) JHS79_21590 PF00486 Transcriptional regulatory protein, C terminal JHS79_21590 PF00072 Response regulator receiver domain JHS79_21600 PF02233 NAD(P) transhydrogenase beta subunit JHS79_21605 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JHS79_21605 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JHS79_21605 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch JHS79_21620 PF00990 Diguanylate cyclase, GGDEF domain JHS79_21630 PF00360 Phytochrome region JHS79_21630 PF00990 Diguanylate cyclase, GGDEF domain JHS79_21630 PF01590 GAF domain JHS79_21630 PF00563 EAL domain JHS79_21640 PF00005 ABC transporter JHS79_21640 PF03459 TOBE domain JHS79_21645 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_21655 PF07685 CobB/CobQ-like glutamine amidotransferase domain JHS79_21660 PF04076 Bacterial OB fold (BOF) protein JHS79_21670 PF08443 RimK-like ATP-grasp domain JHS79_21670 PF18030 RimK PreATP-grasp domain JHS79_21675 PF00155 Aminotransferase class I and II JHS79_21680 PF12833 Helix-turn-helix domain JHS79_21685 PF01554 MatE JHS79_21695 PF13597 Anaerobic ribonucleoside-triphosphate reductase JHS79_21695 PF03477 ATP cone domain JHS79_21705 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS79_21710 PF00873 AcrB/AcrD/AcrF family JHS79_21720 PF04143 Sulphur transport JHS79_21735 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS79_21735 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JHS79_21740 PF00384 Molybdopterin oxidoreductase JHS79_21745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_21745 PF03466 LysR substrate binding domain JHS79_21750 PF02634 FdhD/NarQ family JHS79_21755 PF07690 Major Facilitator Superfamily JHS79_21760 PF00072 Response regulator receiver domain JHS79_21760 PF00196 Bacterial regulatory proteins, luxR family JHS79_21765 PF05231 MASE1 JHS79_21765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_21765 PF07730 Histidine kinase JHS79_21770 PF07690 Major Facilitator Superfamily JHS79_21775 PF01238 Phosphomannose isomerase type I JHS79_21795 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JHS79_21795 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JHS79_21800 PF00085 Thioredoxin JHS79_21805 PF07690 Major Facilitator Superfamily JHS79_21810 PF00512 His Kinase A (phospho-acceptor) domain JHS79_21810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_21810 PF12833 Helix-turn-helix domain JHS79_21810 PF00072 Response regulator receiver domain JHS79_21810 PF07495 Y_Y_Y domain JHS79_21810 PF07494 Two component regulator propeller JHS79_21815 PF01554 MatE JHS79_21820 PF11756 Nitrous oxide-stimulated promoter JHS79_21835 PF00593 TonB dependent receptor JHS79_21835 PF07715 TonB-dependent Receptor Plug Domain JHS79_21845 PF03605 Anaerobic c4-dicarboxylate membrane transporter JHS79_21860 PF10414 Sirohaem synthase dimerisation region JHS79_21860 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JHS79_21860 PF14824 Sirohaem biosynthesis protein central JHS79_21865 PF01226 Formate/nitrite transporter JHS79_21870 PF13806 Rieske-like [2Fe-2S] domain JHS79_21875 PF18267 Rubredoxin NAD+ reductase C-terminal domain JHS79_21875 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS79_21875 PF04324 BFD-like [2Fe-2S] binding domain JHS79_21875 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JHS79_21875 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JHS79_21880 PF01272 Transcription elongation factor, GreA/GreB, C-term JHS79_21880 PF14760 Rnk N-terminus JHS79_21915 PF06965 Na+/H+ antiporter 1 JHS79_21915 PF13462 Thioredoxin JHS79_21950 PF00672 HAMP domain JHS79_21950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS79_21955 PF00842 Alanine racemase, C-terminal domain JHS79_21955 PF01168 Alanine racemase, N-terminal domain JHS79_21970 PF09330 D-lactate dehydrogenase, membrane binding JHS79_21970 PF01565 FAD binding domain JHS79_21975 PF03466 LysR substrate binding domain JHS79_21975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_21990 PF05762 VWA domain containing CoxE-like protein JHS79_21995 PF07728 AAA domain (dynein-related subfamily) JHS79_21995 PF17868 AAA lid domain JHS79_21995 PF12592 Protein of unknown function (DUF3763) JHS79_22005 PF01212 Beta-eliminating lyase JHS79_22010 PF00034 Cytochrome c JHS79_22015 PF03606 C4-dicarboxylate anaerobic carrier JHS79_22025 PF01569 PAP2 superfamily JHS79_22035 PF00892 EamA-like transporter family JHS79_22050 PF00072 Response regulator receiver domain JHS79_22050 PF01584 CheW-like domain JHS79_22070 PF00196 Bacterial regulatory proteins, luxR family JHS79_22070 PF00072 Response regulator receiver domain JHS79_22080 PF00990 Diguanylate cyclase, GGDEF domain JHS79_22085 PF00196 Bacterial regulatory proteins, luxR family JHS79_22085 PF00072 Response regulator receiver domain JHS79_22090 PF13188 PAS domain JHS79_22090 PF03707 Bacterial signalling protein N terminal repeat JHS79_22090 PF00990 Diguanylate cyclase, GGDEF domain JHS79_22090 PF00563 EAL domain JHS79_22095 PF00072 Response regulator receiver domain JHS79_22095 PF09456 RcsC Alpha-Beta-Loop (ABL) JHS79_22095 PF00512 His Kinase A (phospho-acceptor) domain JHS79_22095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_22105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_22105 PF03466 LysR substrate binding domain JHS79_22120 PF01926 50S ribosome-binding GTPase JHS79_22125 PF00155 Aminotransferase class I and II JHS79_22130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_22130 PF00072 Response regulator receiver domain JHS79_22145 PF07690 Major Facilitator Superfamily JHS79_22155 PF08212 Lipocalin-like domain JHS79_22175 PF13476 AAA domain JHS79_22180 PF00149 Calcineurin-like phosphoesterase JHS79_22180 PF12320 Type 5 capsule protein repressor C-terminal domain JHS79_22195 PF04717 Type VI secretion system, phage-baseplate injector JHS79_22195 PF06715 Gp5 C-terminal repeat (3 copies) JHS79_22205 PF17871 AAA lid domain JHS79_22205 PF10431 C-terminal, D2-small domain, of ClpB protein JHS79_22205 PF07724 AAA domain (Cdc48 subfamily) JHS79_22205 PF00004 ATPase family associated with various cellular activities (AAA) JHS79_22215 PF05947 Type VI secretion system, TssF JHS79_22230 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath JHS79_22235 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath JHS79_22240 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 JHS79_22260 PF06761 Intracellular multiplication and human macrophage-killing JHS79_22260 PF14331 ImcF-related N-terminal domain JHS79_22260 PF06744 Type VI secretion protein IcmF C-terminal JHS79_22265 PF13677 Membrane MotB of proton-channel complex MotA/MotB JHS79_22265 PF00691 OmpA family JHS79_22270 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE JHS79_22285 PF03793 PASTA domain JHS79_22285 PF00069 Protein kinase domain JHS79_22310 PF00072 Response regulator receiver domain JHS79_22310 PF00211 Adenylate and Guanylate cyclase catalytic domain JHS79_22325 PF00440 Bacterial regulatory proteins, tetR family JHS79_22325 PF08361 MAATS-type transcriptional repressor, C-terminal region JHS79_22340 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JHS79_22340 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS79_22340 PF13806 Rieske-like [2Fe-2S] domain JHS79_22340 PF18267 Rubredoxin NAD+ reductase C-terminal domain JHS79_22340 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JHS79_22340 PF04324 BFD-like [2Fe-2S] binding domain JHS79_22345 PF00005 ABC transporter JHS79_22350 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_22360 PF08376 Nitrate and nitrite sensing JHS79_22360 PF03861 ANTAR domain JHS79_22365 PF01738 Dienelactone hydrolase family JHS79_22370 PF00591 Glycosyl transferase family, a/b domain JHS79_22370 PF02885 Glycosyl transferase family, helical bundle domain JHS79_22375 PF10414 Sirohaem synthase dimerisation region JHS79_22375 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JHS79_22375 PF14824 Sirohaem biosynthesis protein central JHS79_22380 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JHS79_22380 PF00384 Molybdopterin oxidoreductase JHS79_22380 PF01568 Molydopterin dinucleotide binding domain JHS79_22385 PF00583 Acetyltransferase (GNAT) family JHS79_22390 PF03222 Tryptophan/tyrosine permease family JHS79_22395 PF00990 Diguanylate cyclase, GGDEF domain JHS79_22395 PF00072 Response regulator receiver domain JHS79_22405 PF01483 Proprotein convertase P-domain JHS79_22405 PF00082 Subtilase family JHS79_22415 PF00245 Alkaline phosphatase JHS79_22430 PF00486 Transcriptional regulatory protein, C terminal JHS79_22430 PF00072 Response regulator receiver domain JHS79_22455 PF04314 Copper chaperone PCu(A)C JHS79_22460 PF00012 Hsp70 protein JHS79_22475 PF00676 Dehydrogenase E1 component JHS79_22480 PF02779 Transketolase, pyrimidine binding domain JHS79_22480 PF02780 Transketolase, C-terminal domain JHS79_22485 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JHS79_22485 PF00364 Biotin-requiring enzyme JHS79_22485 PF02817 e3 binding domain JHS79_22495 PF00043 Glutathione S-transferase, C-terminal domain JHS79_22495 PF02798 Glutathione S-transferase, N-terminal domain JHS79_22500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_22500 PF03466 LysR substrate binding domain JHS79_22510 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_22515 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_22520 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS79_22525 PF00005 ABC transporter JHS79_22530 PF01565 FAD binding domain JHS79_22530 PF08031 Berberine and berberine like JHS79_22535 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JHS79_22545 PF01040 UbiA prenyltransferase family JHS79_22555 PF00510 Cytochrome c oxidase subunit III JHS79_22560 PF00115 Cytochrome C and Quinol oxidase polypeptide I JHS79_22565 PF06481 COX Aromatic Rich Motif JHS79_22565 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JHS79_22575 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JHS79_22575 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JHS79_22580 PF00378 Enoyl-CoA hydratase/isomerase JHS79_22585 PF00378 Enoyl-CoA hydratase/isomerase JHS79_22590 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JHS79_22590 PF02770 Acyl-CoA dehydrogenase, middle domain JHS79_22590 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JHS79_22595 PF00171 Aldehyde dehydrogenase family JHS79_22600 PF00108 Thiolase, N-terminal domain JHS79_22600 PF02803 Thiolase, C-terminal domain JHS79_22605 PF00376 MerR family regulatory protein JHS79_22605 PF09278 MerR, DNA binding JHS79_22610 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JHS79_22610 PF02770 Acyl-CoA dehydrogenase, middle domain JHS79_22610 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JHS79_22615 PF01039 Carboxyl transferase domain JHS79_22620 PF00378 Enoyl-CoA hydratase/isomerase JHS79_22625 PF00682 HMGL-like JHS79_22630 PF10063 Uncharacterized integral membrane protein (DUF2301) JHS79_22640 PF13426 PAS domain JHS79_22640 PF08447 PAS fold JHS79_22640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS79_22645 PF00871 Acetokinase family JHS79_22650 PF13426 PAS domain JHS79_22650 PF00563 EAL domain JHS79_22650 PF00990 Diguanylate cyclase, GGDEF domain JHS79_22655 PF00270 DEAD/DEAH box helicase JHS79_22655 PF00271 Helicase conserved C-terminal domain JHS79_22655 PF03880 DbpA RNA binding domain JHS79_22660 PF08206 Ribonuclease B OB domain JHS79_22660 PF00575 S1 RNA binding domain JHS79_22660 PF00773 RNB domain JHS79_22665 PF12833 Helix-turn-helix domain JHS79_22675 PF12849 PBP superfamily domain JHS79_22680 PF01575 MaoC like domain JHS79_22690 PF03466 LysR substrate binding domain JHS79_22690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_22695 PF13186 Iron-sulfur cluster-binding domain JHS79_22695 PF04055 Radical SAM superfamily JHS79_22700 PF00884 Sulfatase JHS79_22705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_22705 PF03466 LysR substrate binding domain JHS79_22715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS79_22715 PF00672 HAMP domain JHS79_22715 PF12729 Four helix bundle sensory module for signal transduction JHS79_22720 PF00005 ABC transporter JHS79_22725 PF00563 EAL domain JHS79_22725 PF12792 CSS motif domain associated with EAL JHS79_22745 PF00271 Helicase conserved C-terminal domain JHS79_22745 PF00270 DEAD/DEAH box helicase JHS79_22750 PF07683 Cobalamin synthesis protein cobW C-terminal domain JHS79_22750 PF02492 CobW/HypB/UreG, nucleotide-binding domain JHS79_22760 PF01470 Pyroglutamyl peptidase JHS79_22770 PF00291 Pyridoxal-phosphate dependent enzyme JHS79_22775 PF09905 DNA-binding protein VF530 JHS79_22780 PF00270 DEAD/DEAH box helicase JHS79_22780 PF00271 Helicase conserved C-terminal domain JHS79_22785 PF12843 Putative quorum-sensing-regulated virulence factor JHS79_22805 PF01329 Pterin 4 alpha carbinolamine dehydratase JHS79_22810 PF00351 Biopterin-dependent aromatic amino acid hydroxylase JHS79_22815 PF00501 AMP-binding enzyme JHS79_22815 PF13193 AMP-binding enzyme C-terminal domain JHS79_22825 PF03466 LysR substrate binding domain JHS79_22825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_22850 PF00892 EamA-like transporter family JHS79_22865 PF00465 Iron-containing alcohol dehydrogenase JHS79_22870 PF07995 Glucose / Sorbosone dehydrogenase JHS79_22880 PF00210 Ferritin-like domain JHS79_22885 PF00672 HAMP domain JHS79_22885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS79_22885 PF17200 Single Cache domain 2 JHS79_22895 PF00005 ABC transporter JHS79_22895 PF02687 FtsX-like permease family JHS79_22895 PF12704 MacB-like periplasmic core domain JHS79_22900 PF02687 FtsX-like permease family JHS79_22900 PF00005 ABC transporter JHS79_22900 PF12704 MacB-like periplasmic core domain JHS79_22915 PF00990 Diguanylate cyclase, GGDEF domain JHS79_22920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS79_22920 PF08447 PAS fold JHS79_22920 PF13426 PAS domain JHS79_22925 PF03889 Alternative ribosome-rescue factor A JHS79_22930 PF00313 'Cold-shock' DNA-binding domain JHS79_22960 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JHS79_22960 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JHS79_22965 PF01040 UbiA prenyltransferase family JHS79_22970 PF02628 Cytochrome oxidase assembly protein JHS79_22990 PF00510 Cytochrome c oxidase subunit III JHS79_22995 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 JHS79_23000 PF00115 Cytochrome C and Quinol oxidase polypeptide I JHS79_23005 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JHS79_23005 PF02790 Cytochrome C oxidase subunit II, transmembrane domain JHS79_23010 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JHS79_23010 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JHS79_23010 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JHS79_23010 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JHS79_23020 PF01810 LysE type translocator JHS79_23025 PF12833 Helix-turn-helix domain JHS79_23040 PF01557 Fumarylacetoacetate (FAA) hydrolase family JHS79_23050 PF00267 Gram-negative porin JHS79_23055 PF00892 EamA-like transporter family JHS79_23060 PF00462 Glutaredoxin JHS79_23070 PF07690 Major Facilitator Superfamily JHS79_23075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_23075 PF03466 LysR substrate binding domain JHS79_23080 PF00563 EAL domain JHS79_23080 PF08448 PAS fold JHS79_23080 PF00990 Diguanylate cyclase, GGDEF domain JHS79_23080 PF08447 PAS fold JHS79_23085 PF08525 Opacity-associated protein A N-terminal motif JHS79_23085 PF01551 Peptidase family M23 JHS79_23085 PF01476 LysM domain JHS79_23105 PF07670 Nucleoside recognition JHS79_23110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS79_23110 PF00672 HAMP domain JHS79_23110 PF02743 Cache domain JHS79_23120 PF03222 Tryptophan/tyrosine permease family JHS79_23155 PF08240 Alcohol dehydrogenase GroES-like domain JHS79_23155 PF00107 Zinc-binding dehydrogenase JHS79_23160 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JHS79_23160 PF02378 Phosphotransferase system, EIIC JHS79_23165 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JHS79_23170 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JHS79_23180 PF01758 Sodium Bile acid symporter family JHS79_23190 PF01161 Phosphatidylethanolamine-binding protein JHS79_23195 PF02567 Phenazine biosynthesis-like protein JHS79_23200 PF10282 Lactonase, 7-bladed beta-propeller JHS79_23205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS79_23205 PF00672 HAMP domain JHS79_23215 PF00005 ABC transporter JHS79_23235 PF12838 4Fe-4S dicluster domain JHS79_23235 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JHS79_23235 PF01568 Molydopterin dinucleotide binding domain JHS79_23235 PF00384 Molybdopterin oxidoreductase JHS79_23235 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JHS79_23255 PF00873 AcrB/AcrD/AcrF family JHS79_23275 PF00990 Diguanylate cyclase, GGDEF domain JHS79_23285 PF13302 Acetyltransferase (GNAT) domain JHS79_23295 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JHS79_23300 PF00873 AcrB/AcrD/AcrF family JHS79_23305 PF13533 Biotin-lipoyl like JHS79_23315 PF00326 Prolyl oligopeptidase family JHS79_23315 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JHS79_23320 PF00005 ABC transporter JHS79_23320 PF16326 ABC transporter C-terminal domain JHS79_23320 PF12848 ABC transporter JHS79_23325 PF00582 Universal stress protein family JHS79_23330 PF02525 Flavodoxin-like fold JHS79_23335 PF02254 TrkA-N domain JHS79_23335 PF00999 Sodium/hydrogen exchanger family JHS79_23350 PF00128 Alpha amylase, catalytic domain JHS79_23360 PF01752 Collagenase JHS79_23360 PF08453 Peptidase family M9 N-terminal JHS79_23360 PF04151 Bacterial pre-peptidase C-terminal domain JHS79_23375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_23375 PF03466 LysR substrate binding domain JHS79_23380 PF00210 Ferritin-like domain JHS79_23385 PF00141 Peroxidase JHS79_23405 PF00082 Subtilase family JHS79_23440 PF07690 Major Facilitator Superfamily JHS79_23445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_23445 PF03466 LysR substrate binding domain JHS79_23475 PF00239 Resolvase, N terminal domain JHS79_23475 PF02796 Helix-turn-helix domain of resolvase JHS79_23495 PF00072 Response regulator receiver domain JHS79_23495 PF01584 CheW-like domain JHS79_23505 PF01243 Pyridoxamine 5'-phosphate oxidase JHS79_23510 PF06228 Haem utilisation ChuX/HutX JHS79_23515 PF04055 Radical SAM superfamily JHS79_23520 PF03544 Gram-negative bacterial TonB protein C-terminal JHS79_23525 PF01618 MotA/TolQ/ExbB proton channel family JHS79_23530 PF02472 Biopolymer transport protein ExbD/TolR JHS79_23540 PF01032 FecCD transport family JHS79_23545 PF00005 ABC transporter JHS79_23585 PF01467 Cytidylyltransferase-like JHS79_23590 PF02540 NAD synthase JHS79_23595 PF03473 MOSC domain JHS79_23595 PF03476 MOSC N-terminal beta barrel domain JHS79_23595 PF03473 MOSC domain JHS79_23595 PF00111 2Fe-2S iron-sulfur cluster binding domain JHS79_23595 PF03476 MOSC N-terminal beta barrel domain JHS79_23595 PF00111 2Fe-2S iron-sulfur cluster binding domain JHS79_23600 PF01679 Proteolipid membrane potential modulator JHS79_23605 PF01979 Amidohydrolase family JHS79_23610 PF05661 Protein of unknown function (DUF808) JHS79_23640 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_23645 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_23645 PF14785 Maltose transport system permease protein MalF P2 domain JHS79_23650 PF01547 Bacterial extracellular solute-binding protein JHS79_23655 PF00005 ABC transporter JHS79_23655 PF08402 TOBE domain JHS79_23660 PF02397 Bacterial sugar transferase JHS79_23675 PF13614 AAA domain JHS79_23675 PF13807 G-rich domain on putative tyrosine kinase JHS79_23675 PF02706 Chain length determinant protein JHS79_23685 PF00534 Glycosyl transferases group 1 JHS79_23685 PF13439 Glycosyltransferase Family 4 JHS79_23715 PF04266 ASCH domain JHS79_23720 PF16925 Tetracyclin repressor-like, C-terminal domain JHS79_23720 PF00440 Bacterial regulatory proteins, tetR family JHS79_23725 PF16884 N-terminal domain of oxidoreductase JHS79_23725 PF00107 Zinc-binding dehydrogenase JHS79_23730 PF13417 Glutathione S-transferase, N-terminal domain JHS79_23735 PF00199 Catalase JHS79_23735 PF06628 Catalase-related immune-responsive JHS79_23740 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JHS79_23740 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JHS79_23750 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JHS79_23760 PF12833 Helix-turn-helix domain JHS79_23765 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JHS79_23765 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JHS79_23770 PF01238 Phosphomannose isomerase type I JHS79_23780 PF13419 Haloacid dehalogenase-like hydrolase JHS79_23785 PF00127 Copper binding proteins, plastocyanin/azurin family JHS79_23790 PF03707 Bacterial signalling protein N terminal repeat JHS79_23790 PF00990 Diguanylate cyclase, GGDEF domain JHS79_23790 PF00563 EAL domain JHS79_23795 PF02386 Cation transport protein JHS79_23800 PF02080 TrkA-C domain JHS79_23800 PF02254 TrkA-N domain JHS79_23805 PF00072 Response regulator receiver domain JHS79_23805 PF00486 Transcriptional regulatory protein, C terminal JHS79_23810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_23810 PF00512 His Kinase A (phospho-acceptor) domain JHS79_23810 PF02702 Osmosensitive K+ channel His kinase sensor domain JHS79_23810 PF13493 Domain of unknown function (DUF4118) JHS79_23810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_23810 PF00512 His Kinase A (phospho-acceptor) domain JHS79_23810 PF13493 Domain of unknown function (DUF4118) JHS79_23810 PF02702 Osmosensitive K+ channel His kinase sensor domain JHS79_23815 PF00664 ABC transporter transmembrane region JHS79_23815 PF00005 ABC transporter JHS79_23820 PF00593 TonB dependent receptor JHS79_23820 PF07715 TonB-dependent Receptor Plug Domain JHS79_23825 PF00005 ABC transporter JHS79_23830 PF01497 Periplasmic binding protein JHS79_23835 PF01032 FecCD transport family JHS79_23845 PF00529 HlyD membrane-fusion protein of T1SS JHS79_23850 PF00664 ABC transporter transmembrane region JHS79_23850 PF00005 ABC transporter JHS79_23860 PF00196 Bacterial regulatory proteins, luxR family JHS79_23865 PF00196 Bacterial regulatory proteins, luxR family JHS79_23875 PF02743 Cache domain JHS79_23875 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS79_23875 PF00672 HAMP domain JHS79_23880 PF07726 ATPase family associated with various cellular activities (AAA) JHS79_23880 PF17863 AAA lid domain JHS79_23885 PF01882 Protein of unknown function DUF58 JHS79_23895 PF13519 von Willebrand factor type A domain JHS79_23900 PF07584 Aerotolerance regulator N-terminal JHS79_23900 PF13519 von Willebrand factor type A domain JHS79_23915 PF00005 ABC transporter JHS79_23920 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_23925 PF00528 Binding-protein-dependent transport system inner membrane component JHS79_23930 PF12849 PBP superfamily domain JHS79_23935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS79_23935 PF00672 HAMP domain JHS79_23955 PF00593 TonB dependent receptor JHS79_23955 PF07715 TonB-dependent Receptor Plug Domain JHS79_23960 PF00326 Prolyl oligopeptidase family JHS79_23960 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JHS79_23965 PF00271 Helicase conserved C-terminal domain JHS79_23965 PF00270 DEAD/DEAH box helicase JHS79_23975 PF03734 L,D-transpeptidase catalytic domain JHS79_23975 PF01476 LysM domain JHS79_23975 PF17969 L,D-transpeptidase C-terminal domain JHS79_23980 PF00875 DNA photolyase JHS79_23980 PF03441 FAD binding domain of DNA photolyase JHS79_23985 PF13411 MerR HTH family regulatory protein JHS79_23990 PF08349 Protein of unknown function (DUF1722) JHS79_23995 PF01048 Phosphorylase superfamily JHS79_24010 PF00990 Diguanylate cyclase, GGDEF domain JHS79_24015 PF11742 Protein of unknown function (DUF3302) JHS79_24020 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JHS79_24020 PF00529 HlyD membrane-fusion protein of T1SS JHS79_24025 PF07155 ECF-type riboflavin transporter, S component JHS79_24030 PF00005 ABC transporter JHS79_24030 PF12558 ATP-binding cassette cobalt transporter JHS79_24045 PF13237 4Fe-4S dicluster domain JHS79_24045 PF12801 4Fe-4S binding domain JHS79_24050 PF12800 4Fe-4S binding domain JHS79_24050 PF12838 4Fe-4S dicluster domain JHS79_24055 PF00583 Acetyltransferase (GNAT) family JHS79_24070 PF07238 PilZ domain JHS79_24070 PF12945 Flagellar protein YcgR JHS79_24075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS79_24075 PF00672 HAMP domain JHS79_24080 PF13654 AAA domain JHS79_24080 PF05362 Lon protease (S16) C-terminal proteolytic domain JHS79_24090 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JHS79_24090 PF00005 ABC transporter JHS79_24095 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JHS79_24095 PF00326 Prolyl oligopeptidase family JHS79_24100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_24100 PF03466 LysR substrate binding domain JHS79_24105 PF02652 L-lactate permease JHS79_24110 PF01070 FMN-dependent dehydrogenase JHS79_24120 PF00924 Mechanosensitive ion channel JHS79_24125 PF00194 Eukaryotic-type carbonic anhydrase JHS79_24155 PF08240 Alcohol dehydrogenase GroES-like domain JHS79_24155 PF00107 Zinc-binding dehydrogenase JHS79_24160 PF00155 Aminotransferase class I and II JHS79_24165 PF03707 Bacterial signalling protein N terminal repeat JHS79_24165 PF00563 EAL domain JHS79_24165 PF00990 Diguanylate cyclase, GGDEF domain JHS79_24170 PF00497 Bacterial extracellular solute-binding proteins, family 3 JHS79_24175 PF00266 Aminotransferase class-V JHS79_24180 PF00080 Copper/zinc superoxide dismutase (SODC) JHS79_24185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_24185 PF00512 His Kinase A (phospho-acceptor) domain JHS79_24185 PF08448 PAS fold JHS79_24185 PF13426 PAS domain JHS79_24185 PF00072 Response regulator receiver domain JHS79_24190 PF00072 Response regulator receiver domain JHS79_24190 PF00486 Transcriptional regulatory protein, C terminal JHS79_24210 PF03466 LysR substrate binding domain JHS79_24210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_24215 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JHS79_24250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_24250 PF03466 LysR substrate binding domain JHS79_24265 PF18269 T3SS EscN ATPase C-terminal domain JHS79_24265 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JHS79_24275 PF14841 FliG middle domain JHS79_24275 PF14842 FliG N-terminal domain JHS79_24275 PF01706 FliG C-terminal domain JHS79_24280 PF08345 Flagellar M-ring protein C-terminal JHS79_24280 PF01514 Secretory protein of YscJ/FliF family JHS79_24285 PF02049 Flagellar hook-basal body complex protein FliE JHS79_24290 PF02954 Bacterial regulatory protein, Fis family JHS79_24290 PF00072 Response regulator receiver domain JHS79_24290 PF00158 Sigma-54 interaction domain JHS79_24305 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JHS79_24310 PF00813 FliP family JHS79_24315 PF01313 Bacterial export proteins, family 3 JHS79_24320 PF01311 Bacterial export proteins, family 1 JHS79_24325 PF01312 FlhB HrpN YscU SpaS Family JHS79_24330 PF00771 FHIPEP family JHS79_24340 PF00700 Bacterial flagellin C-terminal helical region JHS79_24340 PF00669 Bacterial flagellin N-terminal helical region JHS79_24355 PF07196 Flagellin hook IN motif JHS79_24355 PF07195 Flagellar hook-associated protein 2 C-terminus JHS79_24355 PF02465 Flagellar hook-associated protein 2 N-terminus JHS79_24360 PF02561 Flagellar protein FliS JHS79_24375 PF03748 Flagellar basal body-associated protein FliL JHS79_24380 PF04542 Sigma-70 region 2 JHS79_24380 PF04545 Sigma-70, region 4 JHS79_24385 PF01618 MotA/TolQ/ExbB proton channel family JHS79_24390 PF13677 Membrane MotB of proton-channel complex MotA/MotB JHS79_24390 PF00691 OmpA family JHS79_24400 PF08000 Bacterial PH domain JHS79_24435 PF01228 Glycine radical JHS79_24435 PF02901 Pyruvate formate lyase-like JHS79_24440 PF04055 Radical SAM superfamily JHS79_24445 PF00923 Transaldolase/Fructose-6-phosphate aldolase JHS79_24455 PF00583 Acetyltransferase (GNAT) family JHS79_24470 PF07690 Major Facilitator Superfamily JHS79_24475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_24475 PF03466 LysR substrate binding domain JHS79_24480 PF00892 EamA-like transporter family JHS79_24500 PF13533 Biotin-lipoyl like JHS79_24510 PF01594 AI-2E family transporter JHS79_24525 PF00175 Oxidoreductase NAD-binding domain JHS79_24525 PF00970 Oxidoreductase FAD-binding domain JHS79_24535 PF09905 DNA-binding protein VF530 JHS79_24540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_24540 PF03466 LysR substrate binding domain JHS79_24550 PF00881 Nitroreductase family JHS79_24560 PF00128 Alpha amylase, catalytic domain JHS79_24560 PF00686 Starch binding domain JHS79_24565 PF07943 Penicillin-binding protein 5, C-terminal domain JHS79_24565 PF00768 D-alanyl-D-alanine carboxypeptidase JHS79_24570 PF00561 alpha/beta hydrolase fold JHS79_24580 PF00581 Rhodanese-like domain JHS79_24580 PF17773 UPF0176 acylphosphatase like domain JHS79_24585 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading JHS79_24585 PF18416 N-acetylglucosamine binding protein domain 2 JHS79_24590 PF01734 Patatin-like phospholipase JHS79_24595 PF01914 MarC family integral membrane protein JHS79_24600 PF00881 Nitroreductase family JHS79_24615 PF08803 Putative mono-oxygenase ydhR JHS79_24620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_24620 PF03466 LysR substrate binding domain JHS79_24630 PF00375 Sodium:dicarboxylate symporter family JHS79_24635 PF06803 Protein of unknown function (DUF1232) JHS79_24640 PF07687 Peptidase dimerisation domain JHS79_24640 PF01546 Peptidase family M20/M25/M40 JHS79_24645 PF07670 Nucleoside recognition JHS79_24650 PF07670 Nucleoside recognition JHS79_24665 PF00128 Alpha amylase, catalytic domain JHS79_24670 PF00912 Transglycosylase JHS79_24675 PF00128 Alpha amylase, catalytic domain JHS79_24675 PF02806 Alpha amylase, C-terminal all-beta domain JHS79_24675 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JHS79_24680 PF02446 4-alpha-glucanotransferase JHS79_24685 PF00343 Carbohydrate phosphorylase JHS79_24690 PF00196 Bacterial regulatory proteins, luxR family JHS79_24690 PF17874 MalT-like TPR region JHS79_24705 PF02630 SCO1/SenC JHS79_24715 PF00367 phosphotransferase system, EIIB JHS79_24715 PF02378 Phosphotransferase system, EIIC JHS79_24720 PF03193 RsgA GTPase JHS79_24725 PF00375 Sodium:dicarboxylate symporter family JHS79_24735 PF08543 Phosphomethylpyrimidine kinase JHS79_24745 PF13520 Amino acid permease JHS79_24750 PF01276 Orn/Lys/Arg decarboxylase, major domain JHS79_24750 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain JHS79_24750 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain JHS79_24765 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JHS79_24765 PF11852 Domain of unknown function (DUF3372) JHS79_24765 PF03714 Bacterial pullanase-associated domain JHS79_24765 PF17967 Pullulanase N2 domain JHS79_24765 PF18494 Pullulanase Ins domain JHS79_24770 PF04231 Endonuclease I JHS79_24775 PF00128 Alpha amylase, catalytic domain JHS79_24775 PF02903 Alpha amylase, N-terminal ig-like domain JHS79_24775 PF16657 Maltogenic Amylase, C-terminal domain JHS79_24790 PF02264 LamB porin JHS79_24795 PF00128 Alpha amylase, catalytic domain JHS79_24795 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JHS79_24800 PF02796 Helix-turn-helix domain of resolvase JHS79_24800 PF00239 Resolvase, N terminal domain JHS79_24805 PF07690 Major Facilitator Superfamily JHS79_24815 PF04225 Opacity-associated protein A LysM-like domain JHS79_24815 PF01551 Peptidase family M23 JHS79_24825 PF05193 Peptidase M16 inactive domain JHS79_24825 PF00675 Insulinase (Peptidase family M16) JHS79_24830 PF00672 HAMP domain JHS79_24830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS79_24830 PF17200 Single Cache domain 2 JHS79_24835 PF00005 ABC transporter JHS79_24840 PF01032 FecCD transport family JHS79_24845 PF01032 FecCD transport family JHS79_24850 PF01497 Periplasmic binding protein JHS79_24855 PF07715 TonB-dependent Receptor Plug Domain JHS79_24855 PF07660 Secretin and TonB N terminus short domain JHS79_24855 PF00593 TonB dependent receptor JHS79_24860 PF07715 TonB-dependent Receptor Plug Domain JHS79_24860 PF00593 TonB dependent receptor JHS79_24865 PF02655 ATP-grasp domain JHS79_24865 PF00206 Lyase JHS79_24870 PF06276 Ferric iron reductase FhuF-like transporter JHS79_24870 PF04183 IucA / IucC family JHS79_24880 PF04183 IucA / IucC family JHS79_24880 PF06276 Ferric iron reductase FhuF-like transporter JHS79_24885 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JHS79_24885 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JHS79_24890 PF01547 Bacterial extracellular solute-binding protein JHS79_24895 PF00512 His Kinase A (phospho-acceptor) domain JHS79_24895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_24895 PF08521 Two-component sensor kinase N-terminal JHS79_24900 PF00486 Transcriptional regulatory protein, C terminal JHS79_24900 PF00072 Response regulator receiver domain JHS79_24905 PF02378 Phosphotransferase system, EIIC JHS79_24905 PF00367 phosphotransferase system, EIIB JHS79_24915 PF01136 Peptidase family U32 JHS79_24920 PF02653 Branched-chain amino acid transport system / permease component JHS79_24925 PF00005 ABC transporter JHS79_24930 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JHS79_24935 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JHS79_24935 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JHS79_24945 PF11762 L-arabinose isomerase C-terminal domain JHS79_24945 PF02610 L-arabinose isomerase JHS79_24955 PF02311 AraC-like ligand binding domain JHS79_24955 PF12833 Helix-turn-helix domain JHS79_24970 PF02566 OsmC-like protein JHS79_24975 PF01047 MarR family JHS79_24980 PF00578 AhpC/TSA family JHS79_24980 PF10417 C-terminal domain of 1-Cys peroxiredoxin JHS79_24985 PF07992 Pyridine nucleotide-disulphide oxidoreductase JHS79_24985 PF13192 Thioredoxin domain JHS79_25010 PF03466 LysR substrate binding domain JHS79_25010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_25015 PF12833 Helix-turn-helix domain JHS79_25015 PF01965 DJ-1/PfpI family JHS79_25020 PF04542 Sigma-70 region 2 JHS79_25020 PF08281 Sigma-70, region 4 JHS79_25030 PF02743 Cache domain JHS79_25030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JHS79_25030 PF00672 HAMP domain JHS79_25035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JHS79_25035 PF03466 LysR substrate binding domain JHS79_25040 PF02056 Family 4 glycosyl hydrolase JHS79_25040 PF11975 Family 4 glycosyl hydrolase C-terminal domain JHS79_25055 PF03475 3-alpha domain JHS79_25055 PF03473 MOSC domain JHS79_25060 PF00270 DEAD/DEAH box helicase JHS79_25060 PF00271 Helicase conserved C-terminal domain JHS79_25085 PF00664 ABC transporter transmembrane region JHS79_25085 PF00005 ABC transporter JHS79_25095 PF01037 Lrp/AsnC ligand binding domain JHS79_25130 PF00474 Sodium:solute symporter family JHS79_25140 PF14850 DNA-binding domain of Proline dehydrogenase JHS79_25140 PF18327 Proline utilization A proline dehydrogenase N-terminal domain JHS79_25140 PF00171 Aldehyde dehydrogenase family JHS79_25140 PF01619 Proline dehydrogenase JHS79_25145 PF12833 Helix-turn-helix domain JHS79_25155 PF01243 Pyridoxamine 5'-phosphate oxidase JHS79_25155 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region JHS79_25160 PF02743 Cache domain JHS79_25160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JHS79_25160 PF00512 His Kinase A (phospho-acceptor) domain JHS79_25165 PF00072 Response regulator receiver domain JHS79_25165 PF02954 Bacterial regulatory protein, Fis family JHS79_25165 PF00158 Sigma-54 interaction domain JHS79_25170 PF00529 HlyD membrane-fusion protein of T1SS JHS79_25185 PF03412 Peptidase C39 family JHS79_25185 PF00005 ABC transporter JHS79_25185 PF00664 ABC transporter transmembrane region JHS79_25195 PF03358 NADPH-dependent FMN reductase JHS79_25200 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JHS79_25205 PF00246 Zinc carboxypeptidase JHS79_25210 PF01418 Helix-turn-helix domain, rpiR family JHS79_25210 PF01380 SIS domain JHS79_25215 PF01380 SIS domain JHS79_25220 PF00367 phosphotransferase system, EIIB JHS79_25220 PF02378 Phosphotransferase system, EIIC JHS79_25225 PF00267 Gram-negative porin JHS79_25230 PF03575 Peptidase family S51 JHS79_25240 PF00132 Bacterial transferase hexapeptide (six repeats) JHS79_25250 PF05127 Helicase JHS79_25250 PF13718 GNAT acetyltransferase 2 JHS79_25255 PF08775 ParB family JHS79_25255 PF02195 ParB-like nuclease domain JHS79_25260 PF13614 AAA domain JHS79_25260 PF18607 ParA helix turn helix domain JHS79_25315 PF04002 RadC-like JAB domain JHS79_25355 PF01051 Initiator Replication protein JHS79_25360 PF13614 AAA domain JHS79_25410 PF04245 37-kD nucleoid-associated bacterial protein JHS79_25425 PF13086 AAA domain JHS79_25425 PF13087 AAA domain JHS79_25425 PF13195 Protein of unknown function (DUF4011) JHS79_25435 PF00239 Resolvase, N terminal domain JHS79_25435 PF02796 Helix-turn-helix domain of resolvase JHS79_25445 PF02954 Bacterial regulatory protein, Fis family JHS79_25465 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath JHS79_25475 PF05947 Type VI secretion system, TssF JHS79_25495 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE JHS79_25505 PF00004 ATPase family associated with various cellular activities (AAA) JHS79_25505 PF07724 AAA domain (Cdc48 subfamily) JHS79_25505 PF17871 AAA lid domain JHS79_25505 PF10431 C-terminal, D2-small domain, of ClpB protein JHS79_25510 PF02954 Bacterial regulatory protein, Fis family JHS79_25510 PF00158 Sigma-54 interaction domain JHS79_25525 PF06744 Type VI secretion protein IcmF C-terminal JHS79_25525 PF14331 ImcF-related N-terminal domain JHS79_25525 PF06761 Intracellular multiplication and human macrophage-killing JHS79_25535 PF05638 Type VI secretion system effector, Hcp JHS79_25545 PF16671 Actin cross-linking domain JHS79_25545 PF04717 Type VI secretion system, phage-baseplate injector JHS79_25555 PF01764 Lipase (class 3) JHS79_25570 PF00239 Resolvase, N terminal domain JHS79_25570 PF02796 Helix-turn-helix domain of resolvase JHS79_25580 PF00239 Resolvase, N terminal domain JHS79_25580 PF02796 Helix-turn-helix domain of resolvase JHS79_25585 PF00905 Penicillin binding protein transpeptidase domain JHS79_25585 PF03717 Penicillin-binding Protein dimerisation domain JHS79_25590 PF02796 Helix-turn-helix domain of resolvase JHS79_25590 PF00239 Resolvase, N terminal domain JHS79_25610 PF01548 Transposase JHS79_25610 PF02371 Transposase IS116/IS110/IS902 family JHS79_25620 PF00816 H-NS histone family JHS79_25625 PF03515 Colicin-like bacteriocin tRNase domain JHS79_25625 PF11570 Coiled-coil receptor-binding R-domain of colicin E2 JHS79_25630 PF01320 Colicin immunity protein / pyocin immunity protein JHS79_25655 PF01848 Hok/gef family JHS79_25685 PF01751 Toprim domain JHS79_25685 PF01131 DNA topoisomerase JHS79_25790 PF00437 Type II/IV secretion system protein JHS79_25830 PF00216 Bacterial DNA-binding protein JHS79_25950 PF01131 DNA topoisomerase JHS79_25950 PF01751 Toprim domain JHS79_25970 PF03230 Antirestriction protein JHS79_25980 PF13362 Toprim domain JHS79_25980 PF18818 Metallopeptidase superfamily domain JHS79_25980 PF08401 Domain of unknown function (DUF1738) JHS79_26010 PF00239 Resolvase, N terminal domain JHS79_26010 PF02796 Helix-turn-helix domain of resolvase JHS79_26035 PF01609 Transposase DDE domain JHS79_26035 PF02281 Transposase Tn5 dimerisation domain JHS79_26035 PF14706 Transposase DNA-binding JHS79_26050 PF01797 Transposase IS200 like JHS79_26090 PF00691 OmpA family JHS79_26135 PF00239 Resolvase, N terminal domain JHS79_26135 PF02796 Helix-turn-helix domain of resolvase JHS79_26140 PF13700 Domain of unknown function (DUF4158) JHS79_26140 PF01526 Tn3 transposase DDE domain JHS79_26150 PF13614 AAA domain JHS79_26155 PF04754 Putative transposase, YhgA-like JHS79_26195 PF04956 TrbC/VIRB2 family JHS79_26200 PF05101 Type IV secretory pathway, VirB3-like protein JHS79_26205 PF03135 CagE, TrbE, VirB family, component of type IV transporter system JHS79_26215 PF00437 Type II/IV secretion system protein JHS79_26235 PF03524 Conjugal transfer protein JHS79_26245 PF03743 Bacterial conjugation TrbI-like protein JHS79_26275 PF00437 Type II/IV secretion system protein JHS79_26315 PF01848 Hok/gef family JHS79_26335 PF01464 Transglycosylase SLT domain JHS79_26390 PF13614 AAA domain JHS79_26485 PF00574 Clp protease