locus-tag class description D0853_00005 PF00308 Bacterial dnaA protein D0853_00005 PF08299 Bacterial dnaA protein helix-turn-helix D0853_00005 PF11638 DnaA N-terminal domain D0853_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain D0853_00010 PF02767 DNA polymerase III beta subunit, central domain D0853_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain D0853_00015 PF02463 RecF/RecN/SMC N terminal domain D0853_00020 PF01751 Toprim domain D0853_00020 PF18053 DNA gyrase B subunit insert domain D0853_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_00020 PF00986 DNA gyrase B subunit, carboxyl terminus D0853_00020 PF00204 DNA gyrase B D0853_00040 PF00011 Hsp20/alpha crystallin family D0853_00045 PF00155 Aminotransferase class I and II D0853_00050 PF00128 Alpha amylase, catalytic domain D0853_00055 PF02092 Glycyl-tRNA synthetase beta subunit D0853_00055 PF05746 DALR anticodon binding domain D0853_00060 PF02091 Glycyl-tRNA synthetase alpha subunit D0853_00065 PF01169 Uncharacterized protein family UPF0016 D0853_00075 PF01206 Sulfurtransferase TusA D0853_00085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_00085 PF03466 LysR substrate binding domain D0853_00090 PF00107 Zinc-binding dehydrogenase D0853_00090 PF08240 Alcohol dehydrogenase GroES-like domain D0853_00095 PF00108 Thiolase, N-terminal domain D0853_00095 PF02803 Thiolase, C-terminal domain D0853_00100 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain D0853_00100 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain D0853_00100 PF00378 Enoyl-CoA hydratase/isomerase D0853_00105 PF09186 Domain of unknown function (DUF1949) D0853_00105 PF01205 Uncharacterized protein family UPF0029 D0853_00110 PF02386 Cation transport protein D0853_00115 PF12724 Flavodoxin domain D0853_00185 PF02537 CrcB-like protein, Camphor Resistance (CrcB) D0853_00190 PF13667 ThiC-associated domain D0853_00190 PF01964 Radical SAM ThiC family D0853_00195 PF02581 Thiamine monophosphate synthase D0853_00200 PF00899 ThiF family D0853_00205 PF02597 ThiS family D0853_00210 PF05690 Thiazole biosynthesis protein ThiG D0853_00215 PF04055 Radical SAM superfamily D0853_00215 PF06968 Biotin and Thiamin Synthesis associated domain D0853_00220 PF01321 Creatinase/Prolidase N-terminal domain D0853_00220 PF00557 Metallopeptidase family M24 D0853_00220 PF00557 Metallopeptidase family M24 D0853_00220 PF01321 Creatinase/Prolidase N-terminal domain D0853_00225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_00225 PF03466 LysR substrate binding domain D0853_00230 PF07690 Major Facilitator Superfamily D0853_00250 PF05114 Protein of unknown function (DUF692) D0853_00260 PF13361 UvrD-like helicase C-terminal domain D0853_00260 PF00580 UvrD/REP helicase N-terminal domain D0853_00275 PF01810 LysE type translocator D0853_00285 PF00892 EamA-like transporter family D0853_00290 PF00570 HRDC domain D0853_00290 PF00270 DEAD/DEAH box helicase D0853_00290 PF09382 RQC domain D0853_00290 PF16124 RecQ zinc-binding D0853_00290 PF00271 Helicase conserved C-terminal domain D0853_00305 PF02592 Putative vitamin uptake transporter D0853_00310 PF02541 Ppx/GppA phosphatase family D0853_00315 PF00271 Helicase conserved C-terminal domain D0853_00315 PF00270 DEAD/DEAH box helicase D0853_00320 PF00085 Thioredoxin D0853_00325 PF07497 Rho termination factor, RNA-binding domain D0853_00325 PF07498 Rho termination factor, N-terminal domain D0853_00325 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D0853_00340 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase D0853_00345 PF00111 2Fe-2S iron-sulfur cluster binding domain D0853_00350 PF00175 Oxidoreductase NAD-binding domain D0853_00395 PF07219 HemY protein N-terminus D0853_00400 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase D0853_00405 PF02602 Uroporphyrinogen-III synthase HemD D0853_00410 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain D0853_00410 PF03900 Porphobilinogen deaminase, C-terminal domain D0853_00415 PF12633 Adenylate cyclase NT domain D0853_00415 PF01295 Adenylate cyclase, class-I D0853_00420 PF01491 Frataxin-like domain D0853_00430 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain D0853_00430 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain D0853_00435 PF01678 Diaminopimelate epimerase D0853_00445 PF00589 Phage integrase family D0853_00445 PF02899 Phage integrase, N-terminal SAM-like domain D0853_00450 PF13419 Haloacid dehalogenase-like hydrolase D0853_00455 PF00563 EAL domain D0853_00455 PF08495 FIST N domain D0853_00455 PF10442 FIST C domain D0853_00455 PF00990 Diguanylate cyclase, GGDEF domain D0853_00485 PF12146 Serine aminopeptidase, S33 D0853_00490 PF01810 LysE type translocator D0853_00495 PF08668 HDOD domain D0853_00495 PF00563 EAL domain D0853_00500 PF01022 Bacterial regulatory protein, arsR family D0853_00505 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain D0853_00505 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain D0853_00560 PF01914 MarC family integral membrane protein D0853_00575 PF02881 SRP54-type protein, helical bundle domain D0853_00575 PF00448 SRP54-type protein, GTPase domain D0853_00580 PF00005 ABC transporter D0853_00585 PF18075 FtsX extracellular domain D0853_00590 PF04545 Sigma-70, region 4 D0853_00590 PF04542 Sigma-70 region 2 D0853_00590 PF00140 Sigma-70 factor, region 1.2 D0853_00600 PF00581 Rhodanese-like domain D0853_00605 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease D0853_00605 PF01694 Rhomboid family D0853_00610 PF03748 Flagellar basal body-associated protein FliL D0853_00615 PF04345 Chorismate lyase D0853_00620 PF01040 UbiA prenyltransferase family D0853_00625 PF01553 Acyltransferase D0853_00640 PF01726 LexA DNA binding domain D0853_00640 PF00717 Peptidase S24-like D0853_00645 PF04072 Leucine carboxyl methyltransferase D0853_00650 PF01554 MatE D0853_00655 PF07992 Pyridine nucleotide-disulphide oxidoreductase D0853_00655 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D0853_00660 PF00440 Bacterial regulatory proteins, tetR family D0853_00670 PF05958 tRNA (Uracil-5-)-methyltransferase D0853_00675 PF00593 TonB dependent receptor D0853_00675 PF07715 TonB-dependent Receptor Plug Domain D0853_00685 PF01177 Asp/Glu/Hydantoin racemase D0853_00745 PF13091 PLD-like domain D0853_00755 PF01565 FAD binding domain D0853_00755 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain D0853_00760 PF08279 HTH domain D0853_00760 PF03099 Biotin/lipoate A/B protein ligase family D0853_00760 PF02237 Biotin protein ligase C terminal domain D0853_00765 PF00485 Phosphoribulokinase / Uridine kinase family D0853_00790 PF03143 Elongation factor Tu C-terminal domain D0853_00790 PF03144 Elongation factor Tu domain 2 D0853_00790 PF00009 Elongation factor Tu GTP binding domain D0853_00800 PF00584 SecE/Sec61-gamma subunits of protein translocation complex D0853_00805 PF02357 Transcription termination factor nusG D0853_00805 PF00467 KOW motif D0853_00810 PF03946 Ribosomal protein L11, N-terminal domain D0853_00810 PF00298 Ribosomal protein L11, RNA binding domain D0853_00815 PF00687 Ribosomal protein L1p/L10e family D0853_00820 PF00466 Ribosomal protein L10 D0853_00825 PF00542 Ribosomal protein L7/L12 C-terminal domain D0853_00825 PF16320 Ribosomal protein L7/L12 dimerisation domain D0853_00830 PF00562 RNA polymerase Rpb2, domain 6 D0853_00830 PF04563 RNA polymerase beta subunit D0853_00830 PF04560 RNA polymerase Rpb2, domain 7 D0853_00830 PF10385 RNA polymerase beta subunit external 1 domain D0853_00830 PF04565 RNA polymerase Rpb2, domain 3 D0853_00830 PF04561 RNA polymerase Rpb2, domain 2 D0853_00835 PF04998 RNA polymerase Rpb1, domain 5 D0853_00835 PF05000 RNA polymerase Rpb1, domain 4 D0853_00835 PF04983 RNA polymerase Rpb1, domain 3 D0853_00835 PF00623 RNA polymerase Rpb1, domain 2 D0853_00835 PF04997 RNA polymerase Rpb1, domain 1 D0853_00840 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ D0853_00845 PF09297 NADH pyrophosphatase zinc ribbon domain D0853_00845 PF00293 NUDIX domain D0853_00860 PF01208 Uroporphyrinogen decarboxylase (URO-D) D0853_00865 PF03167 Uracil DNA glycosylase superfamily D0853_00870 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D0853_00875 PF04222 Protein of unknown function (DUF416) D0853_00880 PF00571 CBS domain D0853_00880 PF01595 Cyclin M transmembrane N-terminal domain D0853_00885 PF00216 Bacterial DNA-binding protein D0853_00950 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain D0853_00950 PF02844 Phosphoribosylglycinamide synthetase, N domain D0853_00950 PF02843 Phosphoribosylglycinamide synthetase, C domain D0853_00960 PF02142 MGS-like domain D0853_00960 PF01808 AICARFT/IMPCHase bienzyme D0853_00970 PF13411 MerR HTH family regulatory protein D0853_00975 PF18500 CadC C-terminal domain 1 D0853_00975 PF00486 Transcriptional regulatory protein, C terminal D0853_00985 PF13520 Amino acid permease D0853_00990 PF01276 Orn/Lys/Arg decarboxylase, major domain D0853_00990 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain D0853_00990 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain D0853_01075 PF00990 Diguanylate cyclase, GGDEF domain D0853_01075 PF05230 MASE2 domain D0853_01080 PF12848 ABC transporter D0853_01080 PF00005 ABC transporter D0853_01085 PF07690 Major Facilitator Superfamily D0853_01090 PF02954 Bacterial regulatory protein, Fis family D0853_01095 PF01207 Dihydrouridine synthase (Dus) D0853_01110 PF02785 Biotin carboxylase C-terminal domain D0853_01110 PF00289 Biotin carboxylase, N-terminal domain D0853_01110 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D0853_01115 PF00364 Biotin-requiring enzyme D0853_01120 PF01220 Dehydroquinase class II D0853_01125 PF00501 AMP-binding enzyme D0853_01125 PF13193 AMP-binding enzyme C-terminal domain D0853_01125 PF16177 Acetyl-coenzyme A synthetase N-terminus D0853_01140 PF12832 MFS_1 like family D0853_01145 PF00072 Response regulator receiver domain D0853_01145 PF09308 LuxQ, periplasmic D0853_01145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_01145 PF00512 His Kinase A (phospho-acceptor) domain D0853_01150 PF10415 Fumarase C C-terminus D0853_01150 PF00206 Lyase D0853_01170 PF00474 Sodium:solute symporter family D0853_01180 PF03471 Transporter associated domain D0853_01180 PF00999 Sodium/hydrogen exchanger family D0853_01180 PF02080 TrkA-C domain D0853_01185 PF00072 Response regulator receiver domain D0853_01185 PF00196 Bacterial regulatory proteins, luxR family D0853_01190 PF11412 Disulphide bond corrector protein DsbC D0853_01190 PF02683 Cytochrome C biogenesis protein transmembrane region D0853_01195 PF03605 Anaerobic c4-dicarboxylate membrane transporter D0853_01200 PF00206 Lyase D0853_01200 PF10415 Fumarase C C-terminus D0853_01205 PF04186 FxsA cytoplasmic membrane protein D0853_01210 PF00588 SpoU rRNA Methylase family D0853_01215 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain D0853_01215 PF02777 Iron/manganese superoxide dismutases, C-terminal domain D0853_01220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_01220 PF00672 HAMP domain D0853_01220 PF00512 His Kinase A (phospho-acceptor) domain D0853_01220 PF16527 Two-component sensor protein CpxA, periplasmic domain D0853_01225 PF00072 Response regulator receiver domain D0853_01225 PF00486 Transcriptional regulatory protein, C terminal D0853_01235 PF07813 LTXXQ motif family protein D0853_01240 PF01545 Cation efflux family D0853_01240 PF16916 Dimerisation domain of Zinc Transporter D0853_01245 PF00365 Phosphofructokinase D0853_01250 PF01554 MatE D0853_01255 PF00166 Chaperonin 10 Kd subunit D0853_01260 PF00118 TCP-1/cpn60 chaperonin family D0853_01270 PF02308 MgtC family D0853_01280 PF00842 Alanine racemase, C-terminal domain D0853_01280 PF01168 Alanine racemase, N-terminal domain D0853_01290 PF04055 Radical SAM superfamily D0853_01295 PF01132 Elongation factor P (EF-P) OB domain D0853_01295 PF08207 Elongation factor P (EF-P) KOW-like domain D0853_01295 PF09285 Elongation factor P, C-terminal D0853_01305 PF02313 Fumarate reductase subunit D D0853_01310 PF02300 Fumarate reductase subunit C D0853_01315 PF13183 4Fe-4S dicluster domain D0853_01315 PF13085 2Fe-2S iron-sulfur cluster binding domain D0853_01320 PF00890 FAD binding domain D0853_01320 PF02910 Fumarate reductase flavoprotein C-term D0853_01330 PF00152 tRNA synthetases class II (D, K and N) D0853_01340 PF08360 QacR-like protein, C-terminal region D0853_01340 PF00440 Bacterial regulatory proteins, tetR family D0853_01350 PF01551 Peptidase family M23 D0853_01355 PF00132 Bacterial transferase hexapeptide (six repeats) D0853_01355 PF06426 Serine acetyltransferase, N-terminal D0853_01360 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus D0853_01360 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus D0853_01365 PF02556 Preprotein translocase subunit SecB D0853_01370 PF00581 Rhodanese-like domain D0853_01375 PF01676 Metalloenzyme superfamily D0853_01375 PF06415 BPG-independent PGAM N-terminus (iPGM_N) D0853_01385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D0853_01385 PF00672 HAMP domain D0853_01390 PF00939 Sodium:sulfate symporter transmembrane region D0853_01395 PF02666 Phosphatidylserine decarboxylase D0853_01400 PF03193 RsgA GTPase D0853_01405 PF00929 Exonuclease D0853_01485 PF08331 Domain of unknown function (DUF1730) D0853_01490 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE D0853_01495 PF01520 N-acetylmuramoyl-L-alanine amidase D0853_01500 PF08676 MutL C terminal dimerisation domain D0853_01500 PF01119 DNA mismatch repair protein, C-terminal domain D0853_01510 PF17209 Hfq protein D0853_01515 PF01926 50S ribosome-binding GTPase D0853_01515 PF13167 GTP-binding GTPase N-terminal D0853_01515 PF16360 GTP-binding GTPase Middle Region D0853_01520 PF12221 Bacterial membrane protein N terminal D0853_01520 PF01145 SPFH domain / Band 7 family D0853_01525 PF01145 SPFH domain / Band 7 family D0853_01530 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) D0853_01535 PF00709 Adenylosuccinate synthetase D0853_01545 PF08238 Sel1 repeat D0853_01550 PF00175 Oxidoreductase NAD-binding domain D0853_01550 PF00042 Globin D0853_01550 PF00970 Oxidoreductase FAD-binding domain D0853_01555 PF02082 Transcriptional regulator D0853_01560 PF00575 S1 RNA binding domain D0853_01560 PF00773 RNB domain D0853_01560 PF08461 Ribonuclease R winged-helix domain D0853_01560 PF08206 Ribonuclease B OB domain D0853_01560 PF17876 Cold shock domain D0853_01565 PF00588 SpoU rRNA Methylase family D0853_01565 PF08032 RNA 2'-O ribose methyltransferase substrate binding D0853_01570 PF13419 Haloacid dehalogenase-like hydrolase D0853_01575 PF00579 tRNA synthetases class I (W and Y) D0853_01605 PF00117 Glutamine amidotransferase class-I D0853_01610 PF00202 Aminotransferase class-III D0853_01615 PF04958 Arginine N-succinyltransferase beta subunit D0853_01620 PF00171 Aldehyde dehydrogenase family D0853_01630 PF13545 Crp-like helix-turn-helix domain D0853_01630 PF00027 Cyclic nucleotide-binding domain D0853_01635 PF00485 Phosphoribulokinase / Uridine kinase family D0853_01640 PF06794 Uncharacterised protein family (UPF0270) D0853_01645 PF00561 alpha/beta hydrolase fold D0853_01655 PF00005 ABC transporter D0853_01655 PF12848 ABC transporter D0853_01665 PF02525 Flavodoxin-like fold D0853_01670 PF02254 TrkA-N domain D0853_01670 PF00999 Sodium/hydrogen exchanger family D0853_01680 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D0853_01690 PF01112 Asparaginase D0853_01695 PF04102 SlyX D0853_01705 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D0853_01705 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase D0853_01710 PF08348 YheO-like PAS domain D0853_01710 PF13309 HTH domain D0853_01715 PF02635 DsrE/DsrF-like family D0853_01720 PF02635 DsrE/DsrF-like family D0853_01725 PF04077 DsrH like protein D0853_01730 PF00164 Ribosomal protein S12/S23 D0853_01735 PF00177 Ribosomal protein S7p/S5e D0853_01740 PF03764 Elongation factor G, domain IV D0853_01740 PF00009 Elongation factor Tu GTP binding domain D0853_01740 PF14492 Elongation Factor G, domain II D0853_01740 PF03144 Elongation factor Tu domain 2 D0853_01740 PF00679 Elongation factor G C-terminus D0853_01745 PF00009 Elongation factor Tu GTP binding domain D0853_01745 PF03144 Elongation factor Tu domain 2 D0853_01745 PF03143 Elongation factor Tu C-terminal domain D0853_01750 PF04324 BFD-like [2Fe-2S] binding domain D0853_01755 PF00210 Ferritin-like domain D0853_01760 PF00390 Malic enzyme, N-terminal domain D0853_01760 PF03949 Malic enzyme, NAD binding domain D0853_01765 PF01340 Met Apo-repressor, MetJ D0853_01770 PF01053 Cys/Met metabolism PLP-dependent enzyme D0853_01775 PF03447 Homoserine dehydrogenase, NAD binding domain D0853_01775 PF00696 Amino acid kinase family D0853_01775 PF00742 Homoserine dehydrogenase D0853_01780 PF02219 Methylenetetrahydrofolate reductase D0853_01790 PF00311 Phosphoenolpyruvate carboxylase D0853_01795 PF01546 Peptidase family M20/M25/M40 D0853_01795 PF07687 Peptidase dimerisation domain D0853_01800 PF01118 Semialdehyde dehydrogenase, NAD binding domain D0853_01800 PF02774 Semialdehyde dehydrogenase, dimerisation domain D0853_01805 PF00696 Amino acid kinase family D0853_01810 PF00764 Arginosuccinate synthase D0853_01815 PF14698 Argininosuccinate lyase C-terminal D0853_01815 PF00206 Lyase D0853_01815 PF00583 Acetyltransferase (GNAT) family D0853_01830 PF08534 Redoxin D0853_01830 PF00462 Glutaredoxin D0853_01835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_01835 PF03466 LysR substrate binding domain D0853_01840 PF00905 Penicillin binding protein transpeptidase domain D0853_01840 PF17092 Penicillin-binding protein OB-like domain D0853_01840 PF00912 Transglycosylase D0853_01865 PF00263 Bacterial type II and III secretion system protein D0853_01865 PF11741 AMIN domain D0853_01865 PF03958 Bacterial type II/III secretion system short domain D0853_01865 PF07660 Secretin and TonB N terminus short domain D0853_01870 PF01202 Shikimate kinase D0853_01875 PF01761 3-dehydroquinate synthase D0853_01885 PF02086 D12 class N6 adenine-specific DNA methyltransferase D0853_01890 PF00834 Ribulose-phosphate 3 epimerase family D0853_01895 PF01250 Ribosomal protein S6 D0853_01900 PF00436 Single-strand binding protein family D0853_01905 PF01084 Ribosomal protein S18 D0853_01910 PF03948 Ribosomal protein L9, C-terminal domain D0853_01910 PF01281 Ribosomal protein L9, N-terminal domain D0853_01920 PF00772 DnaB-like helicase N terminal domain D0853_01920 PF03796 DnaB-like helicase C terminal domain D0853_01925 PF01168 Alanine racemase, N-terminal domain D0853_01925 PF00842 Alanine racemase, C-terminal domain D0853_01935 PF01894 Uncharacterised protein family UPF0047 D0853_01940 PF00342 Phosphoglucose isomerase D0853_01950 PF01475 Ferric uptake regulator family D0853_01960 PF01207 Dihydrouridine synthase (Dus) D0853_01985 PF00175 Oxidoreductase NAD-binding domain D0853_01985 PF00258 Flavodoxin D0853_01985 PF00667 FAD binding domain D0853_01990 PF01077 Nitrite and sulphite reductase 4Fe-4S domain D0853_01990 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain D0853_01995 PF01507 Phosphoadenosine phosphosulfate reductase family D0853_02075 PF00999 Sodium/hydrogen exchanger family D0853_02080 PF00809 Pterin binding enzyme D0853_02080 PF02965 Vitamin B12 dependent methionine synthase, activation domain D0853_02080 PF02607 B12 binding domain D0853_02080 PF02574 Homocysteine S-methyltransferase D0853_02080 PF02310 B12 binding domain D0853_02085 PF00696 Amino acid kinase family D0853_02085 PF01842 ACT domain D0853_02095 PF00266 Aminotransferase class-V D0853_02105 PF00005 ABC transporter D0853_02105 PF17760 UvrA interaction domain D0853_02105 PF17755 UvrA DNA-binding domain D0853_02110 PF00483 Nucleotidyl transferase D0853_02115 PF00196 Bacterial regulatory proteins, luxR family D0853_02120 PF00436 Single-strand binding protein family D0853_02125 PF00990 Diguanylate cyclase, GGDEF domain D0853_02125 PF00563 EAL domain D0853_02125 PF17157 Gammaproteobacterial periplasmic sensor domain D0853_02145 PF07660 Secretin and TonB N terminus short domain D0853_02145 PF11741 AMIN domain D0853_02145 PF03958 Bacterial type II/III secretion system short domain D0853_02145 PF00263 Bacterial type II and III secretion system protein D0853_02150 PF01471 Putative peptidoglycan binding domain D0853_02150 PF13401 AAA domain D0853_02160 PF00437 Type II/IV secretion system protein D0853_02160 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain D0853_02165 PF00482 Type II secretion system (T2SS), protein F D0853_02175 PF07963 Prokaryotic N-terminal methylation motif D0853_02175 PF00114 Pilin (bacterial filament) D0853_02215 PF04085 rod shape-determining protein MreC D0853_02220 PF04093 rod shape-determining protein MreD D0853_02225 PF02545 Maf-like protein D0853_02230 PF00575 S1 RNA binding domain D0853_02230 PF10150 Ribonuclease E/G family D0853_02235 PF13502 AsmA-like C-terminal region D0853_02235 PF13116 Protein of unknown function D0853_02240 PF00795 Carbon-nitrogen hydrolase D0853_02245 PF01523 Putative modulator of DNA gyrase D0853_02250 PF02562 PhoH-like protein D0853_02250 PF13638 PIN domain D0853_02255 PF18337 RapA N-terminal Tudor like domain D0853_02255 PF12137 RNA polymerase recycling family C-terminal D0853_02255 PF00176 SNF2 family N-terminal domain D0853_02255 PF18339 RapA N-terminal Tudor like domain 1 D0853_02255 PF00271 Helicase conserved C-terminal domain D0853_02270 PF00849 RNA pseudouridylate synthase D0853_02275 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D0853_02275 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D0853_02280 PF04751 Protein of unknown function (DUF615) D0853_02285 PF01523 Putative modulator of DNA gyrase D0853_02290 PF03448 MgtE intracellular N domain D0853_02290 PF00571 CBS domain D0853_02290 PF01769 Divalent cation transporter D0853_02295 PF00381 PTS HPr component phosphorylation site D0853_02300 PF03668 P-loop ATPase protein family D0853_02305 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D0853_02310 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein D0853_02315 PF00309 Sigma-54 factor, Activator interacting domain (AID) D0853_02315 PF04963 Sigma-54 factor, core binding domain D0853_02315 PF04552 Sigma-54, DNA binding domain D0853_02320 PF12399 Branched-chain amino acid ATP-binding cassette transporter D0853_02320 PF00005 ABC transporter D0853_02325 PF03968 OstA-like protein D0853_02335 PF01380 SIS domain D0853_02335 PF00571 CBS domain D0853_02340 PF01699 Sodium/calcium exchanger protein D0853_02345 PF00005 ABC transporter D0853_02350 PF02405 Permease MlaE D0853_02355 PF02470 MlaD protein D0853_02360 PF05494 MlaC protein D0853_02370 PF01722 BolA-like protein D0853_02375 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D0853_02380 PF01553 Acyltransferase D0853_02385 PF01042 Endoribonuclease L-PSP D0853_02390 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain D0853_02390 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain D0853_02395 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain D0853_02395 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain D0853_02405 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain D0853_02405 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain D0853_02420 PF06877 Regulator of ribonuclease activity B D0853_02430 PF00583 Acetyltransferase (GNAT) family D0853_02440 PF08264 Anticodon-binding domain of tRNA D0853_02440 PF00133 tRNA synthetases class I (I, L, M and V) D0853_02440 PF10458 Valyl tRNA synthetase tRNA binding arm D0853_02445 PF04364 DNA polymerase III chi subunit, HolC D0853_02450 PF02789 Cytosol aminopeptidase family, N-terminal domain D0853_02450 PF00883 Cytosol aminopeptidase family, catalytic domain D0853_02455 PF03739 Lipopolysaccharide export system permease LptF/LptG D0853_02460 PF03739 Lipopolysaccharide export system permease LptF/LptG D0853_02470 PF10011 Predicted membrane protein (DUF2254) D0853_02475 PF00106 short chain dehydrogenase D0853_02485 PF01522 Polysaccharide deacetylase D0853_02490 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D0853_02495 PF02378 Phosphotransferase system, EIIC D0853_02500 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit D0853_02505 PF11975 Family 4 glycosyl hydrolase C-terminal domain D0853_02505 PF02056 Family 4 glycosyl hydrolase D0853_02510 PF04794 YdjC-like protein D0853_02515 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family D0853_02515 PF00356 Bacterial regulatory proteins, lacI family D0853_02520 PF00072 Response regulator receiver domain D0853_02570 PF00171 Aldehyde dehydrogenase family D0853_02600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D0853_02600 PF00672 HAMP domain D0853_02600 PF17200 Single Cache domain 2 D0853_02640 PF01464 Transglycosylase SLT domain D0853_02640 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain D0853_02645 PF04362 Bacterial Fe(2+) trafficking D0853_02650 PF00633 Helix-hairpin-helix motif D0853_02650 PF00730 HhH-GPD superfamily base excision DNA repair protein D0853_02650 PF14815 NUDIX domain D0853_02655 PF02390 Putative methyltransferase D0853_02660 PF02086 D12 class N6 adenine-specific DNA methyltransferase D0853_02665 PF04960 Glutaminase D0853_02670 PF06969 HemN C-terminal domain D0853_02670 PF04055 Radical SAM superfamily D0853_02675 PF01725 Ham1 family D0853_02685 PF02594 Uncharacterised ACR, YggU family COG1872 D0853_02690 PF02325 YGGT family D0853_02695 PF03807 NADP oxidoreductase coenzyme F420-dependent D0853_02695 PF14748 Pyrroline-5-carboxylate reductase dimerisation D0853_02700 PF01168 Alanine racemase, N-terminal domain D0853_02705 PF00437 Type II/IV secretion system protein D0853_02710 PF00437 Type II/IV secretion system protein D0853_02715 PF03652 Holliday junction resolvase D0853_02720 PF02622 Uncharacterized ACR, COG1678 D0853_02725 PF02951 Prokaryotic glutathione synthetase, N-terminal domain D0853_02725 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain D0853_02730 PF04452 RNA methyltransferase D0853_02735 PF04231 Endonuclease I D0853_02740 PF17283 SprT-like zinc ribbon domain D0853_02740 PF10263 SprT-like family D0853_02750 PF02773 S-adenosylmethionine synthetase, C-terminal domain D0853_02750 PF00438 S-adenosylmethionine synthetase, N-terminal domain D0853_02750 PF02772 S-adenosylmethionine synthetase, central domain D0853_02760 PF02780 Transketolase, C-terminal domain D0853_02760 PF00456 Transketolase, thiamine diphosphate binding domain D0853_02760 PF02779 Transketolase, pyrimidine binding domain D0853_02765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_02765 PF03466 LysR substrate binding domain D0853_02770 PF00593 TonB dependent receptor D0853_02770 PF07715 TonB-dependent Receptor Plug Domain D0853_02775 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain D0853_02775 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain D0853_02780 PF00162 Phosphoglycerate kinase D0853_02785 PF01116 Fructose-bisphosphate aldolase class-II D0853_02790 PF00924 Mechanosensitive ion channel D0853_02790 PF05552 Conserved TM helix D0853_02795 PF04073 Aminoacyl-tRNA editing domain D0853_02800 PF01810 LysE type translocator D0853_02805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_02805 PF03466 LysR substrate binding domain D0853_02810 PF04402 Protein of unknown function (DUF541) D0853_02815 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D0853_02815 PF01842 ACT domain D0853_02815 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D0853_02820 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) D0853_02825 PF01812 5-formyltetrahydrofolate cyclo-ligase family D0853_02835 PF05164 Cell division protein ZapA D0853_02845 PF03695 Uncharacterised protein family (UPF0149) D0853_02850 PF01494 FAD binding domain D0853_02855 PF01494 FAD binding domain D0853_02870 PF01571 Aminomethyltransferase folate-binding domain D0853_02875 PF03937 Flavinator of succinate dehydrogenase D0853_02885 PF00890 FAD binding domain D0853_02885 PF02910 Fumarate reductase flavoprotein C-term D0853_02895 PF08281 Sigma-70, region 4 D0853_02895 PF04542 Sigma-70 region 2 D0853_02900 PF03873 Anti sigma-E protein RseA, C-terminal domain D0853_02900 PF03872 Anti sigma-E protein RseA, N-terminal domain D0853_02905 PF03888 MucB/RseB N-terminal domain D0853_02905 PF17188 MucB/RseB C-terminal domain D0853_02915 PF03144 Elongation factor Tu domain 2 D0853_02915 PF06421 GTP-binding protein LepA C-terminus D0853_02915 PF00009 Elongation factor Tu GTP binding domain D0853_02915 PF00679 Elongation factor G C-terminus D0853_02920 PF10502 Signal peptidase, peptidase S26 D0853_02925 PF00035 Double-stranded RNA binding motif D0853_02925 PF14622 Ribonuclease-III-like D0853_02930 PF07650 KH domain D0853_02930 PF01926 50S ribosome-binding GTPase D0853_02935 PF11967 Recombination protein O N terminal D0853_02935 PF02565 Recombination protein O C terminal D0853_02940 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ D0853_02945 PF01648 4'-phosphopantetheinyl transferase superfamily D0853_02950 PF01627 Hpt domain D0853_02950 PF00072 Response regulator receiver domain D0853_02950 PF00512 His Kinase A (phospho-acceptor) domain D0853_02950 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D0853_02950 PF00672 HAMP domain D0853_02950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_02960 PF05958 tRNA (Uracil-5-)-methyltransferase D0853_02960 PF01938 TRAM domain D0853_02970 PF13291 ACT domain D0853_02970 PF04607 Region found in RelA / SpoT proteins D0853_02970 PF02824 TGS domain D0853_02975 PF03819 MazG nucleotide pyrophosphohydrolase domain D0853_02980 PF06418 CTP synthase N-terminus D0853_02980 PF00117 Glutamine amidotransferase class-I D0853_02985 PF03952 Enolase, N-terminal domain D0853_02985 PF00113 Enolase, C-terminal TIM barrel domain D0853_02990 PF04977 Septum formation initiator D0853_02995 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase D0853_03000 PF02542 YgbB family D0853_03005 PF01142 tRNA pseudouridine synthase D (TruD) D0853_03010 PF01975 Survival protein SurE D0853_03020 PF01551 Peptidase family M23 D0853_03020 PF01476 LysM domain D0853_03030 PF05188 MutS domain II D0853_03030 PF05192 MutS domain III D0853_03030 PF00488 MutS domain V D0853_03030 PF05190 MutS family domain IV D0853_03030 PF01624 MutS domain I D0853_03035 PF02464 Competence-damaged protein D0853_03040 PF00154 recA bacterial DNA recombination protein D0853_03045 PF02631 RecX family D0853_03050 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D0853_03050 PF01411 tRNA synthetases class II (A) D0853_03050 PF02272 DHHA1 domain D0853_03055 PF13840 ACT domain D0853_03055 PF00696 Amino acid kinase family D0853_03055 PF01842 ACT domain D0853_03060 PF02599 Global regulator protein family D0853_03115 PF04277 Oxaloacetate decarboxylase, gamma chain D0853_03120 PF02436 Conserved carboxylase domain D0853_03120 PF00682 HMGL-like D0853_03120 PF00364 Biotin-requiring enzyme D0853_03125 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit D0853_03130 PF00107 Zinc-binding dehydrogenase D0853_03130 PF08240 Alcohol dehydrogenase GroES-like domain D0853_03135 PF09335 SNARE associated Golgi protein D0853_03140 PF05193 Peptidase M16 inactive domain D0853_03140 PF00675 Insulinase (Peptidase family M16) D0853_03145 PF04262 Glutamate-cysteine ligase D0853_03155 PF02664 S-Ribosylhomocysteinase (LuxS) D0853_03160 PF00571 CBS domain D0853_03160 PF01595 Cyclin M transmembrane N-terminal domain D0853_03160 PF03471 Transporter associated domain D0853_03165 PF01578 Cytochrome C assembly protein D0853_03170 PF00448 SRP54-type protein, GTPase domain D0853_03170 PF02881 SRP54-type protein, helical bundle domain D0853_03170 PF02978 Signal peptide binding domain D0853_03175 PF00886 Ribosomal protein S16 D0853_03180 PF01782 RimM N-terminal domain D0853_03180 PF05239 PRC-barrel domain D0853_03185 PF01746 tRNA (Guanine-1)-methyltransferase D0853_03190 PF01245 Ribosomal protein L19 D0853_03195 PF03884 DNA gyrase inhibitor YacG D0853_03200 PF07072 Cell division protein D0853_03205 PF01121 Dephospho-CoA kinase D0853_03210 PF01478 Type IV leader peptidase family D0853_03210 PF06750 Bacterial Peptidase A24 N-terminal domain D0853_03215 PF00482 Type II secretion system (T2SS), protein F D0853_03220 PF00437 Type II/IV secretion system protein D0853_03220 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain D0853_03230 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain D0853_03230 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain D0853_03235 PF01510 N-acetylmuramoyl-L-alanine amidase D0853_03240 PF07729 FCD domain D0853_03240 PF00392 Bacterial regulatory proteins, gntR family D0853_03245 PF17831 Pyruvate dehydrogenase E1 component middle domain D0853_03245 PF00456 Transketolase, thiamine diphosphate binding domain D0853_03250 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D0853_03250 PF00364 Biotin-requiring enzyme D0853_03250 PF02817 e3 binding domain D0853_03255 PF07992 Pyridine nucleotide-disulphide oxidoreductase D0853_03255 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D0853_03260 PF00440 Bacterial regulatory proteins, tetR family D0853_03265 PF00156 Phosphoribosyl transferase domain D0853_03270 PF00484 Carbonic anhydrase D0853_03275 PF00916 Sulfate permease family D0853_03275 PF01740 STAS domain D0853_03285 PF00005 ABC transporter D0853_03290 PF01061 ABC-2 type transporter D0853_03300 PF03279 Bacterial lipid A biosynthesis acyltransferase D0853_03310 PF02569 Pantoate-beta-alanine ligase D0853_03315 PF02548 Ketopantoate hydroxymethyltransferase D0853_03320 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) D0853_03325 PF01743 Poly A polymerase head domain D0853_03325 PF12627 Probable RNA and SrmB- binding site of polymerase A D0853_03325 PF12626 Polymerase A arginine-rich C-terminus D0853_03335 PF00749 tRNA synthetases class I (E and Q), catalytic domain D0853_03345 PF01258 Prokaryotic dksA/traR C4-type zinc finger D0853_03350 PF03749 Sugar fermentation stimulation protein RE domain D0853_03350 PF17746 SfsA N-terminal OB domain D0853_03355 PF08482 ATP-dependent helicase C-terminal D0853_03355 PF00270 DEAD/DEAH box helicase D0853_03355 PF00271 Helicase conserved C-terminal domain D0853_03355 PF04408 Helicase associated domain (HA2) D0853_03360 PF14814 Bifunctional transglycosylase second domain D0853_03360 PF00905 Penicillin binding protein transpeptidase domain D0853_03360 PF00912 Transglycosylase D0853_03365 PF01734 Patatin-like phospholipase D0853_03370 PF00330 Aconitase family (aconitate hydratase) D0853_03370 PF06434 Aconitate hydratase 2 N-terminus D0853_03370 PF11791 Aconitate B N-terminal domain D0853_03375 PF06062 Uncharacterised protein family (UPF0231) D0853_03380 PF00543 Nitrogen regulatory protein P-II D0853_03385 PF00909 Ammonium Transporter Family D0853_03390 PF13416 Bacterial extracellular solute-binding protein D0853_03400 PF00005 ABC transporter D0853_03400 PF08402 TOBE domain D0853_03405 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D0853_03405 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D0853_03405 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D0853_03405 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D0853_03410 PF06165 Glycosyltransferase family 36 D0853_03410 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain D0853_03415 PF02838 Glycosyl hydrolase family 20, domain 2 D0853_03415 PF00728 Glycosyl hydrolase family 20, catalytic domain D0853_03420 PF01869 BadF/BadG/BcrA/BcrD ATPase family D0853_03430 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D0853_03430 PF00005 ABC transporter D0853_03435 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D0853_03435 PF00005 ABC transporter D0853_03440 PF12911 N-terminal TM domain of oligopeptide transport permease C D0853_03440 PF00528 Binding-protein-dependent transport system inner membrane component D0853_03445 PF00528 Binding-protein-dependent transport system inner membrane component D0853_03450 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D0853_03455 PF00512 His Kinase A (phospho-acceptor) domain D0853_03455 PF00072 Response regulator receiver domain D0853_03455 PF00497 Bacterial extracellular solute-binding proteins, family 3 D0853_03455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_03465 PF08468 Methyltransferase small domain N-terminal D0853_03465 PF05175 Methyltransferase small domain D0853_03470 PF01594 AI-2E family transporter D0853_03475 PF00202 Aminotransferase class-III D0853_03480 PF01521 Iron-sulphur cluster biosynthesis D0853_03490 PF00873 AcrB/AcrD/AcrF family D0853_03495 PF08525 Opacity-associated protein A N-terminal motif D0853_03495 PF01551 Peptidase family M23 D0853_03495 PF01476 LysM domain D0853_03500 PF00579 tRNA synthetases class I (W and Y) D0853_03510 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family D0853_03515 PF13609 Gram-negative porin D0853_03520 PF01272 Transcription elongation factor, GreA/GreB, C-term D0853_03520 PF03449 Transcription elongation factor, N-terminal D0853_03525 PF01985 CRS1 / YhbY (CRM) domain D0853_03530 PF01728 FtsJ-like methyltransferase D0853_03535 PF00004 ATPase family associated with various cellular activities (AAA) D0853_03535 PF17862 AAA+ lid domain D0853_03535 PF01434 Peptidase family M41 D0853_03535 PF06480 FtsH Extracellular D0853_03540 PF00809 Pterin binding enzyme D0853_03545 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D0853_03545 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D0853_03545 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D0853_03545 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D0853_03555 PF03840 Preprotein translocase SecG subunit D0853_03570 PF17384 RimP C-terminal SH3 domain D0853_03570 PF02576 RimP N-terminal domain D0853_03575 PF00575 S1 RNA binding domain D0853_03575 PF08529 NusA N-terminal domain D0853_03575 PF13184 NusA-like KH domain D0853_03580 PF08364 Bacterial translation initiation factor IF-2 associated region D0853_03580 PF11987 Translation-initiation factor 2 D0853_03580 PF00009 Elongation factor Tu GTP binding domain D0853_03580 PF04760 Translation initiation factor IF-2, N-terminal region D0853_03585 PF02033 Ribosome-binding factor A D0853_03590 PF09157 Pseudouridine synthase II TruB, C-terminal D0853_03590 PF01509 TruB family pseudouridylate synthase (N terminal domain) D0853_03590 PF16198 tRNA pseudouridylate synthase B C-terminal domain D0853_03595 PF00312 Ribosomal protein S15 D0853_03600 PF01138 3' exoribonuclease family, domain 1 D0853_03600 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain D0853_03600 PF00013 KH domain D0853_03600 PF03725 3' exoribonuclease family, domain 2 D0853_03600 PF00575 S1 RNA binding domain D0853_03605 PF13181 Tetratricopeptide repeat D0853_03605 PF07719 Tetratricopeptide repeat D0853_03615 PF01554 MatE D0853_03630 PF03707 Bacterial signalling protein N terminal repeat D0853_03630 PF00990 Diguanylate cyclase, GGDEF domain D0853_03630 PF00563 EAL domain D0853_03640 PF13508 Acetyltransferase (GNAT) domain D0853_03660 PF03144 Elongation factor Tu domain 2 D0853_03660 PF00009 Elongation factor Tu GTP binding domain D0853_03660 PF16658 Class II release factor RF3, C-terminal domain D0853_03670 PF01026 TatD related DNase D0853_03675 PF07662 Na+ dependent nucleoside transporter C-terminus D0853_03675 PF07670 Nucleoside recognition D0853_03675 PF01773 Na+ dependent nucleoside transporter N-terminus D0853_03680 PF01791 DeoC/LacD family aldolase D0853_03685 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain D0853_03685 PF02885 Glycosyl transferase family, helical bundle domain D0853_03685 PF00591 Glycosyl transferase family, a/b domain D0853_03690 PF01676 Metalloenzyme superfamily D0853_03695 PF01048 Phosphorylase superfamily D0853_03705 PF18429 Domain of unknown function (DUF5609) D0853_03715 PF18073 Rubredoxin metal binding domain D0853_03720 PF14492 Elongation Factor G, domain II D0853_03720 PF03144 Elongation factor Tu domain 2 D0853_03720 PF00009 Elongation factor Tu GTP binding domain D0853_03720 PF03764 Elongation factor G, domain IV D0853_03720 PF00679 Elongation factor G C-terminus D0853_03725 PF03466 LysR substrate binding domain D0853_03725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_03735 PF00501 AMP-binding enzyme D0853_03740 PF12833 Helix-turn-helix domain D0853_03740 PF02805 Metal binding domain of Ada D0853_03765 PF00263 Bacterial type II and III secretion system protein D0853_03765 PF04972 BON domain D0853_03765 PF13629 Pilus formation protein N terminal region D0853_03795 PF00437 Type II/IV secretion system protein D0853_03825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_03825 PF03466 LysR substrate binding domain D0853_03830 PF13520 Amino acid permease D0853_03835 PF04074 YhcH/YjgK/YiaL D0853_03840 PF02929 Beta galactosidase small chain D0853_03840 PF16353 Domain of unknown function(DUF4981) D0853_03840 PF00703 Glycosyl hydrolases family 2 D0853_03840 PF02836 Glycosyl hydrolases family 2, TIM barrel domain D0853_03840 PF02837 Glycosyl hydrolases family 2, sugar binding domain D0853_03845 PF00356 Bacterial regulatory proteins, lacI family D0853_03855 PF16363 GDP-mannose 4,6 dehydratase D0853_03860 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain D0853_03860 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain D0853_03865 PF10509 Galactokinase galactose-binding signature D0853_03865 PF08544 GHMP kinases C terminal D0853_03865 PF00288 GHMP kinases N terminal domain D0853_03870 PF01263 Aldose 1-epimerase D0853_03875 PF00356 Bacterial regulatory proteins, lacI family D0853_03890 PF00356 Bacterial regulatory proteins, lacI family D0853_03895 PF01588 Putative tRNA binding domain D0853_03910 PF01544 CorA-like Mg2+ transporter protein D0853_03915 PF01266 FAD dependent oxidoreductase D0853_03915 PF16901 C-terminal domain of alpha-glycerophosphate oxidase D0853_03920 PF08220 DeoR-like helix-turn-helix domain D0853_03920 PF00455 DeoR C terminal sensor domain D0853_03925 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D0853_03925 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D0853_03930 PF00230 Major intrinsic protein D0853_03945 PF07690 Major Facilitator Superfamily D0853_03950 PF03009 Glycerophosphoryl diester phosphodiesterase family D0853_03955 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle D0853_03955 PF14602 Hexapeptide repeat of succinyl-transferase D0853_03960 PF07130 YebG protein D0853_03965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_03965 PF03466 LysR substrate binding domain D0853_03975 PF00884 Sulfatase D0853_03975 PF11893 Domain of unknown function (DUF3413) D0853_03980 PF17946 RecC C-terminal domain D0853_03990 PF00580 UvrD/REP helicase N-terminal domain D0853_03990 PF12705 PD-(D/E)XK nuclease superfamily D0853_03990 PF13361 UvrD-like helicase C-terminal domain D0853_03995 PF13538 UvrD-like helicase C-terminal domain D0853_04005 PF00696 Amino acid kinase family D0853_04005 PF00583 Acetyltransferase (GNAT) family D0853_04020 PF03562 MltA specific insert domain D0853_04020 PF06725 3D domain D0853_04025 PF00899 ThiF family D0853_04030 PF02657 Fe-S metabolism associated domain D0853_04035 PF00990 Diguanylate cyclase, GGDEF domain D0853_04035 PF17158 Membrane-associated sensor, integral membrane domain D0853_04040 PF00266 Aminotransferase class-V D0853_04045 PF01965 DJ-1/PfpI family D0853_04050 PF08546 Ketopantoate reductase PanE/ApbA C terminal D0853_04050 PF02558 Ketopantoate reductase PanE/ApbA D0853_04055 PF03502 Nucleoside-specific channel-forming protein, Tsx D0853_04080 PF04545 Sigma-70, region 4 D0853_04080 PF04542 Sigma-70 region 2 D0853_04090 PF07690 Major Facilitator Superfamily D0853_04095 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD D0853_04100 PF03923 Uncharacterized lipoprotein D0853_04100 PF08139 Prokaryotic membrane lipoprotein lipid attachment site D0853_04105 PF05175 Methyltransferase small domain D0853_04110 PF01722 BolA-like protein D0853_04120 PF11973 NQRA C-terminal domain D0853_04120 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) D0853_04125 PF03116 NQR2, RnfD, RnfE family D0853_04130 PF04205 FMN-binding domain D0853_04135 PF02508 Rnf-Nqr subunit, membrane protein D0853_04140 PF02508 Rnf-Nqr subunit, membrane protein D0853_04145 PF00111 2Fe-2S iron-sulfur cluster binding domain D0853_04145 PF00175 Oxidoreductase NAD-binding domain D0853_04145 PF00970 Oxidoreductase FAD-binding domain D0853_04150 PF02424 ApbE family D0853_04165 PF11799 impB/mucB/samB family C-terminal domain D0853_04165 PF11798 IMS family HHH motif D0853_04165 PF00817 impB/mucB/samB family D0853_04170 PF00270 DEAD/DEAH box helicase D0853_04170 PF00271 Helicase conserved C-terminal domain D0853_04170 PF09382 RQC domain D0853_04170 PF16124 RecQ zinc-binding D0853_04170 PF00570 HRDC domain D0853_04175 PF03449 Transcription elongation factor, N-terminal D0853_04175 PF01272 Transcription elongation factor, GreA/GreB, C-term D0853_04190 PF00209 Sodium:neurotransmitter symporter family D0853_04200 PF06786 Uncharacterised protein family (UPF0253) D0853_04210 PF03129 Anticodon binding domain D0853_04210 PF04073 Aminoacyl-tRNA editing domain D0853_04210 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D0853_04215 PF18389 TrmO C-terminal domain D0853_04215 PF01980 tRNA-methyltransferase O D0853_04220 PF01197 Ribosomal protein L31 D0853_04225 PF00444 Ribosomal protein L36 D0853_04235 PF03806 AbgT putative transporter family D0853_04240 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 D0853_04265 PF04287 tRNA pseudouridine synthase C D0853_04270 PF00849 RNA pseudouridylate synthase D0853_04275 PF11944 Protein of unknown function (DUF3461) D0853_04280 PF08335 GlnD PII-uridylyltransferase D0853_04280 PF01842 ACT domain D0853_04280 PF01909 Nucleotidyltransferase domain D0853_04280 PF01966 HD domain D0853_04285 PF00557 Metallopeptidase family M24 D0853_04290 PF00318 Ribosomal protein S2 D0853_04295 PF00889 Elongation factor TS D0853_04300 PF00696 Amino acid kinase family D0853_04305 PF01765 Ribosome recycling factor D0853_04310 PF01255 Putative undecaprenyl diphosphate synthase D0853_04320 PF13288 DXP reductoisomerase C-terminal domain D0853_04320 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain D0853_04320 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase D0853_04325 PF02163 Peptidase family M50 D0853_04325 PF17820 PDZ domain D0853_04330 PF01103 Surface antigen D0853_04330 PF07244 Surface antigen variable number repeat D0853_04335 PF03938 Outer membrane protein (OmpH-like) D0853_04340 PF00132 Bacterial transferase hexapeptide (six repeats) D0853_04340 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD D0853_04345 PF07977 FabA-like domain D0853_04350 PF00132 Bacterial transferase hexapeptide (six repeats) D0853_04350 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 D0853_04355 PF02684 Lipid-A-disaccharide synthetase D0853_04360 PF01351 Ribonuclease HII D0853_04365 PF17657 Bacterial DNA polymerase III alpha subunit finger domain D0853_04365 PF07733 Bacterial DNA polymerase III alpha NTPase domain D0853_04365 PF02811 PHP domain D0853_04365 PF01336 OB-fold nucleic acid binding domain D0853_04365 PF14579 Helix-hairpin-helix motif D0853_04370 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit D0853_04375 PF11734 TilS substrate C-terminal domain D0853_04375 PF09179 TilS substrate binding domain D0853_04375 PF01171 PP-loop family D0853_04380 PF00034 Cytochrome c D0853_04385 PF00543 Nitrogen regulatory protein P-II D0853_04390 PF03372 Endonuclease/Exonuclease/phosphatase family D0853_04400 PF01476 LysM domain D0853_04400 PF01464 Transglycosylase SLT domain D0853_04405 PF16123 Hydroxyacylglutathione hydrolase C-terminus D0853_04405 PF00753 Metallo-beta-lactamase superfamily D0853_04410 PF08241 Methyltransferase domain D0853_04415 PF00075 RNase H D0853_04420 PF00929 Exonuclease D0853_04430 PF00916 Sulfate permease family D0853_04430 PF01740 STAS domain D0853_04435 PF09317 Domain of unknown function (DUF1974) D0853_04435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D0853_04435 PF02770 Acyl-CoA dehydrogenase, middle domain D0853_04435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D0853_04440 PF13580 SIS domain D0853_04445 PF13230 Glutamine amidotransferases class-II D0853_04450 PF00551 Formyl transferase D0853_04455 PF02769 AIR synthase related protein, C-terminal domain D0853_04455 PF00586 AIR synthase related protein, N-terminal domain D0853_04465 PF00860 Permease family D0853_04480 PF03358 NADPH-dependent FMN reductase D0853_04485 PF03960 ArsC family D0853_04490 PF01435 Peptidase family M48 D0853_04490 PF13181 Tetratricopeptide repeat D0853_04500 PF01594 AI-2E family transporter D0853_04505 PF00578 AhpC/TSA family D0853_04510 PF01842 ACT domain D0853_04515 PF00701 Dihydrodipicolinate synthetase family D0853_04535 PF01546 Peptidase family M20/M25/M40 D0853_04535 PF07687 Peptidase dimerisation domain D0853_04540 PF03960 ArsC family D0853_04565 PF11143 Protein of unknown function (DUF2919) D0853_04570 PF04261 Dyp-type peroxidase family D0853_04575 PF07196 Flagellin hook IN motif D0853_04575 PF00669 Bacterial flagellin N-terminal helical region D0853_04575 PF00700 Bacterial flagellin C-terminal helical region D0853_04585 PF00700 Bacterial flagellin C-terminal helical region D0853_04585 PF07196 Flagellin hook IN motif D0853_04585 PF00669 Bacterial flagellin N-terminal helical region D0853_04590 PF00669 Bacterial flagellin N-terminal helical region D0853_04590 PF00700 Bacterial flagellin C-terminal helical region D0853_04590 PF07196 Flagellin hook IN motif D0853_04595 PF03646 FlaG protein D0853_04600 PF07195 Flagellar hook-associated protein 2 C-terminus D0853_04600 PF02465 Flagellar hook-associated protein 2 N-terminus D0853_04600 PF07196 Flagellin hook IN motif D0853_04610 PF02561 Flagellar protein FliS D0853_04615 PF02954 Bacterial regulatory protein, Fis family D0853_04615 PF01590 GAF domain D0853_04615 PF00158 Sigma-54 interaction domain D0853_04620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_04620 PF00512 His Kinase A (phospho-acceptor) domain D0853_04625 PF00158 Sigma-54 interaction domain D0853_04625 PF00072 Response regulator receiver domain D0853_04625 PF02954 Bacterial regulatory protein, Fis family D0853_04630 PF02049 Flagellar hook-basal body complex protein FliE D0853_04635 PF01514 Secretory protein of YscJ/FliF family D0853_04635 PF08345 Flagellar M-ring protein C-terminal D0853_04640 PF14841 FliG middle domain D0853_04640 PF01706 FliG C-terminal domain D0853_04640 PF14842 FliG N-terminal domain D0853_04650 PF18269 T3SS EscN ATPase C-terminal domain D0853_04650 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D0853_04670 PF02154 Flagellar motor switch protein FliM D0853_04670 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term D0853_04675 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term D0853_04680 PF04347 Flagellar biosynthesis protein, FliO D0853_04685 PF00813 FliP family D0853_04690 PF01313 Bacterial export proteins, family 3 D0853_04695 PF01311 Bacterial export proteins, family 1 D0853_04700 PF01312 FlhB HrpN YscU SpaS Family D0853_04705 PF00771 FHIPEP family D0853_04710 PF00448 SRP54-type protein, GTPase domain D0853_04715 PF10609 NUBPL iron-transfer P-loop NTPase D0853_04720 PF04539 Sigma-70 region 3 D0853_04720 PF04542 Sigma-70 region 2 D0853_04720 PF04545 Sigma-70, region 4 D0853_04725 PF00072 Response regulator receiver domain D0853_04730 PF04344 Chemotaxis phosphatase, CheZ D0853_04735 PF01627 Hpt domain D0853_04735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_04735 PF07194 P2 response regulator binding domain D0853_04735 PF01584 CheW-like domain D0853_04735 PF02895 Signal transducing histidine kinase, homodimeric domain D0853_04740 PF00072 Response regulator receiver domain D0853_04740 PF01339 CheB methylesterase D0853_04745 PF13614 AAA domain D0853_04755 PF01584 CheW-like domain D0853_04765 PF00005 ABC transporter D0853_04770 PF03379 CcmB protein D0853_04775 PF01578 Cytochrome C assembly protein D0853_04780 PF04995 Heme exporter protein D (CcmD) D0853_04785 PF03100 CcmE D0853_04790 PF01578 Cytochrome C assembly protein D0853_04790 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal D0853_04795 PF08534 Redoxin D0853_04800 PF03918 Cytochrome C biogenesis protein D0853_04810 PF04333 MlaA lipoprotein D0853_04815 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) D0853_04820 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) D0853_04830 PF08281 Sigma-70, region 4 D0853_04830 PF04542 Sigma-70 region 2 D0853_04840 PF00108 Thiolase, N-terminal domain D0853_04840 PF02803 Thiolase, C-terminal domain D0853_04845 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain D0853_04845 PF00378 Enoyl-CoA hydratase/isomerase D0853_04845 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain D0853_04855 PF16187 Middle or third domain of peptidase_M16 D0853_04855 PF00675 Insulinase (Peptidase family M16) D0853_04855 PF05193 Peptidase M16 inactive domain D0853_04860 PF00300 Histidine phosphatase superfamily (branch 1) D0853_04865 PF01713 Smr domain D0853_04870 PF05175 Methyltransferase small domain D0853_04875 PF01264 Chorismate synthase D0853_04880 PF03458 UPF0126 domain D0853_04890 PF04315 Elongation factor P hydroxylase D0853_04895 PF08891 YfcL protein D0853_04905 PF03358 NADPH-dependent FMN reductase D0853_04910 PF05430 S-adenosyl-L-methionine-dependent methyltransferase D0853_04910 PF01266 FAD dependent oxidoreductase D0853_04915 PF02801 Beta-ketoacyl synthase, C-terminal domain D0853_04915 PF00109 Beta-ketoacyl synthase, N-terminal domain D0853_04925 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D0853_04925 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D0853_04925 PF11890 Domain of unknown function (DUF3410) D0853_04930 PF01118 Semialdehyde dehydrogenase, NAD binding domain D0853_04930 PF02774 Semialdehyde dehydrogenase, dimerisation domain D0853_04940 PF01416 tRNA pseudouridine synthase D0853_04945 PF01039 Carboxyl transferase domain D0853_04945 PF17848 Acetyl-coA carboxylase zinc finger domain D0853_04950 PF08245 Mur ligase middle domain D0853_04950 PF02875 Mur ligase family, glutamate ligase domain D0853_04955 PF05036 Sporulation related domain D0853_04960 PF02674 Colicin V production protein D0853_04965 PF00156 Phosphoribosyl transferase domain D0853_04970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_04970 PF03466 LysR substrate binding domain D0853_04975 PF00072 Response regulator receiver domain D0853_04985 PF04304 Protein of unknown function (DUF454) D0853_04990 PF00156 Phosphoribosyl transferase domain D0853_04995 PF12169 DNA polymerase III subunits gamma and tau domain III D0853_04995 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding D0853_04995 PF12170 DNA polymerase III tau subunit V interacting with alpha D0853_05000 PF02575 YbaB/EbfC DNA-binding family D0853_05005 PF02132 RecR protein D0853_05005 PF13662 Toprim domain D0853_05010 PF00230 Major intrinsic protein D0853_05020 PF01042 Endoribonuclease L-PSP D0853_05025 PF03313 Serine dehydratase alpha chain D0853_05035 PF03692 Putative zinc- or iron-chelating domain D0853_05040 PF04226 Transglycosylase associated protein D0853_05045 PF03692 Putative zinc- or iron-chelating domain D0853_05050 PF05552 Conserved TM helix D0853_05050 PF00924 Mechanosensitive ion channel D0853_05055 PF03992 Antibiotic biosynthesis monooxygenase D0853_05060 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D0853_05070 PF00245 Alkaline phosphatase D0853_05090 PF13847 Methyltransferase domain D0853_05095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D0853_05095 PF00672 HAMP domain D0853_05095 PF02743 Cache domain D0853_05100 PF01263 Aldose 1-epimerase D0853_05105 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain D0853_05105 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain D0853_05110 PF01641 SelR domain D0853_05120 PF07023 Protein of unknown function (DUF1315) D0853_05125 PF00710 Asparaginase, N-terminal D0853_05125 PF17763 Glutaminase/Asparaginase C-terminal domain D0853_05130 PF01343 Peptidase family S49 D0853_05135 PF07992 Pyridine nucleotide-disulphide oxidoreductase D0853_05135 PF00724 NADH:flavin oxidoreductase / NADH oxidase family D0853_05140 PF00881 Nitroreductase family D0853_05145 PF01131 DNA topoisomerase D0853_05145 PF01751 Toprim domain D0853_05160 PF00106 short chain dehydrogenase D0853_05165 PF00850 Histone deacetylase domain D0853_05235 PF00589 Phage integrase family D0853_05235 PF14659 Phage integrase, N-terminal SAM-like domain D0853_05245 PF00884 Sulfatase D0853_05245 PF11893 Domain of unknown function (DUF3413) D0853_05250 PF07208 Protein of unknown function (DUF1414) D0853_05255 PF04245 37-kD nucleoid-associated bacterial protein D0853_05270 PF03553 Na+/H+ antiporter family D0853_05275 PF02774 Semialdehyde dehydrogenase, dimerisation domain D0853_05275 PF01118 Semialdehyde dehydrogenase, NAD binding domain D0853_05280 PF00520 Ion transport protein D0853_05280 PF00027 Cyclic nucleotide-binding domain D0853_05285 PF01914 MarC family integral membrane protein D0853_05290 PF00171 Aldehyde dehydrogenase family D0853_05290 PF00465 Iron-containing alcohol dehydrogenase D0853_05305 PF02777 Iron/manganese superoxide dismutases, C-terminal domain D0853_05305 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain D0853_05310 PF00462 Glutaredoxin D0853_05320 PF13726 Na+-H+ antiporter family D0853_05320 PF03553 Na+/H+ antiporter family D0853_05325 PF00929 Exonuclease D0853_05340 PF00691 OmpA family D0853_05340 PF18393 MotY N-terminal domain D0853_05345 PF10952 Protein of unknown function (DUF2753) D0853_05350 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D0853_05355 PF00730 HhH-GPD superfamily base excision DNA repair protein D0853_05355 PF10576 Iron-sulfur binding domain of endonuclease III D0853_05355 PF00633 Helix-hairpin-helix motif D0853_05360 PF02508 Rnf-Nqr subunit, membrane protein D0853_05365 PF04205 FMN-binding domain D0853_05370 PF03116 NQR2, RnfD, RnfE family D0853_05375 PF12838 4Fe-4S dicluster domain D0853_05375 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit D0853_05375 PF10531 SLBB domain D0853_05375 PF13375 RnfC Barrel sandwich hybrid domain D0853_05380 PF04060 Putative Fe-S cluster D0853_05385 PF02508 Rnf-Nqr subunit, membrane protein D0853_05400 PF04851 Type III restriction enzyme, res subunit D0853_05400 PF00271 Helicase conserved C-terminal domain D0853_05400 PF17757 UvrB interaction domain D0853_05400 PF02151 UvrB/uvrC motif D0853_05400 PF12344 Ultra-violet resistance protein B D0853_05405 PF00158 Sigma-54 interaction domain D0853_05405 PF00072 Response regulator receiver domain D0853_05405 PF02954 Bacterial regulatory protein, Fis family D0853_05410 PF01627 Hpt domain D0853_05415 PF01933 Uncharacterised protein family UPF0052 D0853_05420 PF06463 Molybdenum Cofactor Synthesis C D0853_05420 PF04055 Radical SAM superfamily D0853_05425 PF00994 Probable molybdopterin binding domain D0853_05430 PF01967 MoaC family D0853_05435 PF02597 ThiS family D0853_05440 PF02391 MoaE protein D0853_05445 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D0853_05450 PF00528 Binding-protein-dependent transport system inner membrane component D0853_05455 PF00528 Binding-protein-dependent transport system inner membrane component D0853_05455 PF12911 N-terminal TM domain of oligopeptide transport permease C D0853_05460 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D0853_05460 PF00005 ABC transporter D0853_05465 PF00005 ABC transporter D0853_05465 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D0853_05470 PF13409 Glutathione S-transferase, N-terminal domain D0853_05480 PF13194 Domain of unknown function (DUF4010) D0853_05485 PF01515 Phosphate acetyl/butaryl transferase D0853_05485 PF07085 DRTGG domain D0853_05490 PF00871 Acetokinase family D0853_05495 PF04217 Protein of unknown function, DUF412 D0853_05505 PF02653 Branched-chain amino acid transport system / permease component D0853_05510 PF00005 ABC transporter D0853_05515 PF02903 Alpha amylase, N-terminal ig-like domain D0853_05515 PF00128 Alpha amylase, catalytic domain D0853_05520 PF00990 Diguanylate cyclase, GGDEF domain D0853_05520 PF00072 Response regulator receiver domain D0853_05525 PF01207 Dihydrouridine synthase (Dus) D0853_05530 PF02810 SEC-C motif D0853_05530 PF07516 SecA Wing and Scaffold domain D0853_05530 PF01043 SecA preprotein cross-linking domain D0853_05530 PF07517 SecA DEAD-like domain D0853_05535 PF02600 Disulfide bond formation protein DsbB D0853_05540 PF06450 Bacterial Na+/H+ antiporter B (NhaB) D0853_05545 PF00392 Bacterial regulatory proteins, gntR family D0853_05545 PF07840 FadR C-terminal domain D0853_05555 PF09334 tRNA synthetases class I (M) D0853_05555 PF01588 Putative tRNA binding domain D0853_05560 PF10609 NUBPL iron-transfer P-loop NTPase D0853_05565 PF00485 Phosphoribulokinase / Uridine kinase family D0853_05575 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP D0853_05575 PF12557 Cob(I)alamin adenosyltransferase N terminal D0853_05580 PF01451 Low molecular weight phosphotyrosine protein phosphatase D0853_05585 PF01740 STAS domain D0853_05585 PF00916 Sulfate permease family D0853_05595 PF12111 Polyribonucleotide phosphorylase C terminal D0853_05595 PF10150 Ribonuclease E/G family D0853_05595 PF00575 S1 RNA binding domain D0853_05610 PF00849 RNA pseudouridylate synthase D0853_05610 PF01479 S4 domain D0853_05615 PF02545 Maf-like protein D0853_05620 PF02620 Large ribosomal RNA subunit accumulation protein YceD D0853_05625 PF01783 Ribosomal L32p protein family D0853_05630 PF02504 Fatty acid synthesis protein D0853_05635 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal D0853_05635 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III D0853_05640 PF00698 Acyl transferase domain D0853_05650 PF00550 Phosphopantetheine attachment site D0853_05655 PF02801 Beta-ketoacyl synthase, C-terminal domain D0853_05655 PF00109 Beta-ketoacyl synthase, N-terminal domain D0853_05660 PF01063 Amino-transferase class IV D0853_05665 PF02618 YceG-like family D0853_05670 PF02223 Thymidylate kinase D0853_05675 PF09115 DNA polymerase III, delta subunit, C terminal D0853_05680 PF01026 TatD related DNase D0853_05685 PF02378 Phosphotransferase system, EIIC D0853_05685 PF00367 phosphotransferase system, EIIB D0853_05705 PF00209 Sodium:neurotransmitter symporter family D0853_05720 PF01734 Patatin-like phospholipase D0853_05725 PF02887 Pyruvate kinase, alpha/beta domain D0853_05725 PF00224 Pyruvate kinase, barrel domain D0853_05730 PF00480 ROK family D0853_05735 PF01584 CheW-like domain D0853_05735 PF00072 Response regulator receiver domain D0853_05740 PF14579 Helix-hairpin-helix motif D0853_05740 PF02811 PHP domain D0853_05740 PF17657 Bacterial DNA polymerase III alpha subunit finger domain D0853_05740 PF01336 OB-fold nucleic acid binding domain D0853_05740 PF07733 Bacterial DNA polymerase III alpha NTPase domain D0853_05755 PF00106 short chain dehydrogenase D0853_05760 PF01343 Peptidase family S49 D0853_05760 PF08496 Peptidase family S49 N-terminal D0853_05765 PF02224 Cytidylate kinase D0853_05770 PF00575 S1 RNA binding domain D0853_05775 PF00216 Bacterial DNA-binding protein D0853_05780 PF06305 Lipopolysaccharide assembly protein A domain D0853_05785 PF18073 Rubredoxin metal binding domain D0853_05790 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family D0853_05795 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D0853_05805 PF01370 NAD dependent epimerase/dehydratase family D0853_05810 PF00535 Glycosyl transferase family 2 D0853_05820 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase D0853_05830 PF02470 MlaD protein D0853_05835 PF04403 Paraquat-inducible protein A D0853_05840 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D0853_05845 PF00034 Cytochrome c D0853_05850 PF01568 Molydopterin dinucleotide binding domain D0853_05850 PF00384 Molybdopterin oxidoreductase D0853_05850 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D0853_05855 PF03916 Polysulphide reductase, NrfD D0853_05860 PF13247 4Fe-4S dicluster domain D0853_05865 PF00512 His Kinase A (phospho-acceptor) domain D0853_05865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_05870 PF00196 Bacterial regulatory proteins, luxR family D0853_05870 PF00072 Response regulator receiver domain D0853_05875 PF03466 LysR substrate binding domain D0853_05875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_05885 PF11412 Disulphide bond corrector protein DsbC D0853_05885 PF02683 Cytochrome C biogenesis protein transmembrane region D0853_05890 PF00085 Thioredoxin D0853_05905 PF01938 TRAM domain D0853_05905 PF05958 tRNA (Uracil-5-)-methyltransferase D0853_05920 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D0853_05930 PF12704 MacB-like periplasmic core domain D0853_05930 PF02687 FtsX-like permease family D0853_05930 PF00005 ABC transporter D0853_05935 PF12704 MacB-like periplasmic core domain D0853_05935 PF02687 FtsX-like permease family D0853_05935 PF00005 ABC transporter D0853_05940 PF12704 MacB-like periplasmic core domain D0853_05940 PF02687 FtsX-like permease family D0853_05940 PF00005 ABC transporter D0853_05945 PF00857 Isochorismatase family D0853_05950 PF02311 AraC-like ligand binding domain D0853_05950 PF12833 Helix-turn-helix domain D0853_05960 PF08267 Cobalamin-independent synthase, N-terminal domain D0853_05960 PF01717 Cobalamin-independent synthase, Catalytic domain D0853_05970 PF00529 HlyD membrane-fusion protein of T1SS D0853_05970 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D0853_05975 PF03466 LysR substrate binding domain D0853_05975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_05995 PF00512 His Kinase A (phospho-acceptor) domain D0853_05995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_05995 PF00672 HAMP domain D0853_06000 PF00486 Transcriptional regulatory protein, C terminal D0853_06000 PF00072 Response regulator receiver domain D0853_06010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D0853_06010 PF00672 HAMP domain D0853_06015 PF08497 Radical SAM N-terminal D0853_06015 PF04055 Radical SAM superfamily D0853_06015 PF11842 Domain of unknown function (DUF3362) D0853_06020 PF00360 Phytochrome region D0853_06020 PF00990 Diguanylate cyclase, GGDEF domain D0853_06020 PF00563 EAL domain D0853_06020 PF01590 GAF domain D0853_06035 PF03466 LysR substrate binding domain D0853_06035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_06045 PF01717 Cobalamin-independent synthase, Catalytic domain D0853_06045 PF08267 Cobalamin-independent synthase, N-terminal domain D0853_06055 PF03795 YCII-related domain D0853_06060 PF03061 Thioesterase superfamily D0853_06065 PF04279 Intracellular septation protein A D0853_06075 PF00072 Response regulator receiver domain D0853_06075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_06080 PF17327 Acyl homoserine lactone synthase D0853_06085 PF00375 Sodium:dicarboxylate symporter family D0853_06095 PF00501 AMP-binding enzyme D0853_06095 PF13193 AMP-binding enzyme C-terminal domain D0853_06100 PF00027 Cyclic nucleotide-binding domain D0853_06100 PF13545 Crp-like helix-turn-helix domain D0853_06110 PF00290 Tryptophan synthase alpha chain D0853_06115 PF00291 Pyridoxal-phosphate dependent enzyme D0853_06120 PF00218 Indole-3-glycerol phosphate synthase D0853_06120 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase D0853_06125 PF00591 Glycosyl transferase family, a/b domain D0853_06125 PF02885 Glycosyl transferase family, helical bundle domain D0853_06130 PF00117 Glutamine amidotransferase class-I D0853_06135 PF00425 chorismate binding enzyme D0853_06135 PF04715 Anthranilate synthase component I, N terminal region D0853_06140 PF08056 Tryptophan operon leader peptide D0853_06145 PF02811 PHP domain D0853_06150 PF01300 Telomere recombination D0853_06160 PF01479 S4 domain D0853_06160 PF00849 RNA pseudouridylate synthase D0853_06170 PF04269 Protein of unknown function, DUF440 D0853_06175 PF08207 Elongation factor P (EF-P) KOW-like domain D0853_06175 PF09285 Elongation factor P, C-terminal D0853_06175 PF01132 Elongation factor P (EF-P) OB domain D0853_06185 PF00136 DNA polymerase family B D0853_06185 PF03104 DNA polymerase family B, exonuclease domain D0853_06190 PF00072 Response regulator receiver domain D0853_06190 PF00196 Bacterial regulatory proteins, luxR family D0853_06195 PF01541 GIY-YIG catalytic domain D0853_06195 PF08459 UvrC Helix-hairpin-helix N-terminal D0853_06195 PF02151 UvrB/uvrC motif D0853_06200 PF01066 CDP-alcohol phosphatidyltransferase D0853_06225 PF00202 Aminotransferase class-III D0853_06230 PF03435 Saccharopine dehydrogenase NADP binding domain D0853_06230 PF16653 Saccharopine dehydrogenase C-terminal domain D0853_06235 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain D0853_06250 PF00994 Probable molybdopterin binding domain D0853_06260 PF00268 Ribonucleotide reductase, small chain D0853_06265 PF00317 Ribonucleotide reductase, all-alpha domain D0853_06265 PF03477 ATP cone domain D0853_06265 PF02867 Ribonucleotide reductase, barrel domain D0853_06275 PF00521 DNA gyrase/topoisomerase IV, subunit A D0853_06275 PF03989 DNA gyrase C-terminal domain, beta-propeller D0853_06290 PF02335 Cytochrome c552 D0853_06300 PF13247 4Fe-4S dicluster domain D0853_06305 PF03916 Polysulphide reductase, NrfD D0853_06310 PF01578 Cytochrome C assembly protein D0853_06310 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal D0853_06315 PF08534 Redoxin D0853_06320 PF03918 Cytochrome C biogenesis protein D0853_06330 PF00925 GTP cyclohydrolase II D0853_06355 PF01471 Putative peptidoglycan binding domain D0853_06355 PF03734 L,D-transpeptidase catalytic domain D0853_06360 PF05951 Bacterial protein of unknown function (DUF882) D0853_06365 PF00753 Metallo-beta-lactamase superfamily D0853_06380 PF03480 Bacterial extracellular solute-binding protein, family 7 D0853_06390 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D0853_06395 PF07730 Histidine kinase D0853_06395 PF17200 Single Cache domain 2 D0853_06400 PF00196 Bacterial regulatory proteins, luxR family D0853_06400 PF00072 Response regulator receiver domain D0853_06405 PF01047 MarR family D0853_06410 PF02028 BCCT, betaine/carnitine/choline family transporter D0853_06415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D0853_06415 PF00672 HAMP domain D0853_06435 PF00155 Aminotransferase class I and II D0853_06460 PF00155 Aminotransferase class I and II D0853_06460 PF00392 Bacterial regulatory proteins, gntR family D0853_06470 PF01336 OB-fold nucleic acid binding domain D0853_06470 PF00152 tRNA synthetases class II (D, K and N) D0853_06475 PF12729 Four helix bundle sensory module for signal transduction D0853_06475 PF00672 HAMP domain D0853_06475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D0853_06490 PF17876 Cold shock domain D0853_06490 PF08461 Ribonuclease R winged-helix domain D0853_06490 PF08206 Ribonuclease B OB domain D0853_06490 PF00773 RNB domain D0853_06490 PF00575 S1 RNA binding domain D0853_06495 PF00313 'Cold-shock' DNA-binding domain D0853_06525 PF01242 6-pyruvoyl tetrahydropterin synthase D0853_06535 PF00563 EAL domain D0853_06535 PF04940 Sensors of blue-light using FAD D0853_06540 PF03313 Serine dehydratase alpha chain D0853_06540 PF03315 Serine dehydratase beta chain D0853_06545 PF03222 Tryptophan/tyrosine permease family D0853_06550 PF00293 NUDIX domain D0853_06560 PF09308 LuxQ, periplasmic D0853_06560 PF00072 Response regulator receiver domain D0853_06560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_06560 PF00512 His Kinase A (phospho-acceptor) domain D0853_06565 PF04715 Anthranilate synthase component I, N terminal region D0853_06565 PF00425 chorismate binding enzyme D0853_06585 PF04317 YcjX-like family, DUF463 D0853_06590 PF05128 Domain of unknown function (DUF697) D0853_06595 PF00158 Sigma-54 interaction domain D0853_06595 PF18024 Helix-turn-helix domain D0853_06600 PF13302 Acetyltransferase (GNAT) domain D0853_06615 PF00589 Phage integrase family D0853_06615 PF13495 Phage integrase, N-terminal SAM-like domain D0853_06635 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D0853_06900 PF13091 PLD-like domain D0853_06940 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system D0853_06945 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system D0853_07015 PF13676 TIR domain D0853_07055 PF01588 Putative tRNA binding domain D0853_07140 PF01042 Endoribonuclease L-PSP D0853_07205 PF04371 Porphyromonas-type peptidyl-arginine deiminase D0853_07210 PF00171 Aldehyde dehydrogenase family D0853_07215 PF00202 Aminotransferase class-III D0853_07220 PF01368 DHH family D0853_07220 PF02833 DHHA2 domain D0853_07230 PF00563 EAL domain D0853_07230 PF00196 Bacterial regulatory proteins, luxR family D0853_07245 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D0853_07245 PF01411 tRNA synthetases class II (A) D0853_07245 PF02272 DHHA1 domain D0853_07250 PF12833 Helix-turn-helix domain D0853_07260 PF01047 MarR family D0853_07265 PF04237 YjbR D0853_07275 PF01928 CYTH domain D0853_07285 PF12464 Maltose acetyltransferase D0853_07285 PF00132 Bacterial transferase hexapeptide (six repeats) D0853_07300 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D0853_07300 PF00072 Response regulator receiver domain D0853_07300 PF01627 Hpt domain D0853_07300 PF00512 His Kinase A (phospho-acceptor) domain D0853_07300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_07300 PF00672 HAMP domain D0853_07305 PF00563 EAL domain D0853_07305 PF00990 Diguanylate cyclase, GGDEF domain D0853_07305 PF03707 Bacterial signalling protein N terminal repeat D0853_07320 PF04204 Homoserine O-succinyltransferase D0853_07335 PF13520 Amino acid permease D0853_07345 PF03279 Bacterial lipid A biosynthesis acyltransferase D0853_07350 PF02074 Carboxypeptidase Taq (M32) metallopeptidase D0853_07355 PF01810 LysE type translocator D0853_07365 PF01235 Sodium:alanine symporter family D0853_07390 PF00884 Sulfatase D0853_07395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_07395 PF08521 Two-component sensor kinase N-terminal D0853_07395 PF00512 His Kinase A (phospho-acceptor) domain D0853_07400 PF00072 Response regulator receiver domain D0853_07400 PF00486 Transcriptional regulatory protein, C terminal D0853_07420 PF00501 AMP-binding enzyme D0853_07430 PF04069 Substrate binding domain of ABC-type glycine betaine transport system D0853_07435 PF00528 Binding-protein-dependent transport system inner membrane component D0853_07440 PF00005 ABC transporter D0853_07440 PF00571 CBS domain D0853_07455 PF02028 BCCT, betaine/carnitine/choline family transporter D0853_07460 PF00583 Acetyltransferase (GNAT) family D0853_07465 PF00202 Aminotransferase class-III D0853_07470 PF06339 Ectoine synthase D0853_07475 PF13840 ACT domain D0853_07475 PF00696 Amino acid kinase family D0853_07480 PF00034 Cytochrome c D0853_07480 PF03150 Di-haem cytochrome c peroxidase D0853_07495 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D0853_07510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_07510 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain D0853_07510 PF17203 Single cache domain 3 D0853_07510 PF00989 PAS fold D0853_07515 PF00072 Response regulator receiver domain D0853_07515 PF12431 Transcriptional regulator D0853_07520 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain D0853_07520 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain D0853_07525 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase D0853_07530 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D0853_07530 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain D0853_07555 PF01590 GAF domain D0853_07555 PF00158 Sigma-54 interaction domain D0853_07555 PF02954 Bacterial regulatory protein, Fis family D0853_07560 PF00171 Aldehyde dehydrogenase family D0853_07580 PF12833 Helix-turn-helix domain D0853_07600 PF16693 Inner membrane component of T3SS, periplasmic domain D0853_07600 PF16697 Inner membrane component of T3SS, cytoplasmic domain D0853_07610 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF D0853_07615 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) D0853_07625 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI D0853_07630 PF01514 Secretory protein of YscJ/FliF family D0853_07640 PF02108 Flagellar assembly protein FliH D0853_07650 PF02661 Fic/DOC family D0853_07690 PF12146 Serine aminopeptidase, S33 D0853_07695 PF12146 Serine aminopeptidase, S33 D0853_07700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_07700 PF03466 LysR substrate binding domain D0853_07705 PF01312 FlhB HrpN YscU SpaS Family D0853_07710 PF01311 Bacterial export proteins, family 1 D0853_07715 PF01313 Bacterial export proteins, family 3 D0853_07720 PF00813 FliP family D0853_07725 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term D0853_07740 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D0853_07740 PF02874 ATP synthase alpha/beta family, beta-barrel domain D0853_07740 PF18269 T3SS EscN ATPase C-terminal domain D0853_07745 PF07201 HrpJ-like domain D0853_07750 PF09059 TyeA D0853_07770 PF00771 FHIPEP family D0853_07775 PF09621 Type III secretion system regulator (LcrR) D0853_07780 PF07216 LcrG protein D0853_07785 PF04792 V antigen (LcrV) protein D0853_07790 PF07720 Tetratricopeptide repeat D0853_07800 PF05844 YopD protein D0853_07810 PF01925 Sulfite exporter TauE/SafE D0853_07815 PF01970 Tripartite tricarboxylate transporter TctA family D0853_07845 PF00285 Citrate synthase, C-terminal domain D0853_07850 PF00330 Aconitase family (aconitate hydratase) D0853_07850 PF00694 Aconitase C-terminal domain D0853_07855 PF04303 PrpF protein D0853_07860 PF00501 AMP-binding enzyme D0853_07860 PF13193 AMP-binding enzyme C-terminal domain D0853_07860 PF16177 Acetyl-coenzyme A synthetase N-terminus D0853_07870 PF00089 Trypsin D0853_07885 PF04055 Radical SAM superfamily D0853_07890 PF06508 Queuosine biosynthesis protein QueC D0853_07895 PF00990 Diguanylate cyclase, GGDEF domain D0853_07895 PF17158 Membrane-associated sensor, integral membrane domain D0853_07905 PF00691 OmpA family D0853_07905 PF05736 OprF membrane domain D0853_07920 PF00691 OmpA family D0853_07920 PF05736 OprF membrane domain D0853_07935 PF10672 S-adenosylmethionine-dependent methyltransferase D0853_07935 PF17785 PUA-like domain D0853_07940 PF02743 Cache domain D0853_07940 PF00672 HAMP domain D0853_07940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D0853_07945 PF00708 Acylphosphatase D0853_07950 PF04358 DsrC like protein D0853_07960 PF01027 Inhibitor of apoptosis-promoting Bax1 D0853_07965 PF00005 ABC transporter D0853_07970 PF00528 Binding-protein-dependent transport system inner membrane component D0853_07975 PF00528 Binding-protein-dependent transport system inner membrane component D0853_07980 PF00497 Bacterial extracellular solute-binding proteins, family 3 D0853_07990 PF14824 Sirohaem biosynthesis protein central D0853_07990 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D0853_07990 PF10414 Sirohaem synthase dimerisation region D0853_08000 PF04461 Protein of unknown function (DUF520) D0853_08005 PF00793 DAHP synthetase I family D0853_08025 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF D0853_08025 PF01189 16S rRNA methyltransferase RsmB/F D0853_08025 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF D0853_08035 PF02470 MlaD protein D0853_08040 PF04403 Paraquat-inducible protein A D0853_08045 PF00664 ABC transporter transmembrane region D0853_08045 PF00005 ABC transporter D0853_08050 PF13185 GAF domain D0853_08055 PF17516 ProQ C-terminal domain D0853_08055 PF04352 ProQ/FINO family D0853_08060 PF17804 Tail specific protease N-terminal domain D0853_08060 PF00595 PDZ domain D0853_08060 PF11818 C-terminal domain of tail specific protease (DUF3340) D0853_08060 PF03572 Peptidase family S41 D0853_08070 PF01433 Peptidase family M1 domain D0853_08070 PF11940 Domain of unknown function (DUF3458) Ig-like fold D0853_08070 PF17432 Domain of unknown function (DUF3458_C) ARM repeats D0853_08080 PF05088 Bacterial NAD-glutamate dehydrogenase D0853_08085 PF01180 Dihydroorotate dehydrogenase D0853_08090 PF07126 Cell-division protein ZapC D0853_08100 PF10672 S-adenosylmethionine-dependent methyltransferase D0853_08100 PF02926 THUMP domain D0853_08100 PF01170 Putative RNA methylase family UPF0020 D0853_08120 PF04957 Ribosome modulation factor D0853_08125 PF07977 FabA-like domain D0853_08130 PF05362 Lon protease (S16) C-terminal proteolytic domain D0853_08130 PF13654 AAA domain D0853_08135 PF06303 MatP N-terminal domain D0853_08135 PF17414 MatP C-terminal ribbon-helix-helix domain D0853_08170 PF05840 Bacteriophage replication gene A protein (GPA) D0853_08345 PF00072 Response regulator receiver domain D0853_08345 PF09308 LuxQ, periplasmic D0853_08345 PF00512 His Kinase A (phospho-acceptor) domain D0853_08345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_08360 PF00115 Cytochrome C and Quinol oxidase polypeptide I D0853_08375 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D0853_08375 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP D0853_08385 PF00403 Heavy-metal-associated domain D0853_08400 PF13545 Crp-like helix-turn-helix domain D0853_08400 PF00027 Cyclic nucleotide-binding domain D0853_08405 PF00582 Universal stress protein family D0853_08415 PF01171 PP-loop family D0853_08435 PF00005 ABC transporter D0853_08435 PF08402 TOBE domain D0853_08440 PF00528 Binding-protein-dependent transport system inner membrane component D0853_08445 PF00528 Binding-protein-dependent transport system inner membrane component D0853_08450 PF13416 Bacterial extracellular solute-binding protein D0853_08455 PF13416 Bacterial extracellular solute-binding protein D0853_08460 PF02146 Sir2 family D0853_08470 PF00909 Ammonium Transporter Family D0853_08515 PF13247 4Fe-4S dicluster domain D0853_08520 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D0853_08520 PF00384 Molybdopterin oxidoreductase D0853_08520 PF01568 Molydopterin dinucleotide binding domain D0853_08530 PF02613 Nitrate reductase delta subunit D0853_08555 PF02634 FdhD/NarQ family D0853_08560 PF00005 ABC transporter D0853_08560 PF12848 ABC transporter D0853_08570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_08570 PF00512 His Kinase A (phospho-acceptor) domain D0853_08575 PF00158 Sigma-54 interaction domain D0853_08575 PF00072 Response regulator receiver domain D0853_08575 PF02954 Bacterial regulatory protein, Fis family D0853_08585 PF12849 PBP superfamily domain D0853_08590 PF00528 Binding-protein-dependent transport system inner membrane component D0853_08595 PF00005 ABC transporter D0853_08595 PF08402 TOBE domain D0853_08600 PF12804 MobA-like NTP transferase domain D0853_08605 PF03454 MoeA C-terminal region (domain IV) D0853_08605 PF00994 Probable molybdopterin binding domain D0853_08605 PF03453 MoeA N-terminal region (domain I and II) D0853_08615 PF00480 ROK family D0853_08655 PF00672 HAMP domain D0853_08655 PF17202 Single cache domain 3 D0853_08655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D0853_08660 PF00877 NlpC/P60 family D0853_08670 PF00990 Diguanylate cyclase, GGDEF domain D0853_08670 PF05230 MASE2 domain D0853_08675 PF00072 Response regulator receiver domain D0853_08675 PF01339 CheB methylesterase D0853_08690 PF00677 Lumazine binding domain D0853_08695 PF01554 MatE D0853_08705 PF01068 ATP dependent DNA ligase domain D0853_08705 PF14743 DNA ligase OB-like domain D0853_08710 PF01740 STAS domain D0853_08720 PF02563 Polysaccharide biosynthesis/export protein D0853_08720 PF10531 SLBB domain D0853_08740 PF02954 Bacterial regulatory protein, Fis family D0853_08740 PF00158 Sigma-54 interaction domain D0853_08740 PF00072 Response regulator receiver domain D0853_08745 PF13439 Glycosyltransferase Family 4 D0853_08745 PF00534 Glycosyl transferases group 1 D0853_08750 PF00534 Glycosyl transferases group 1 D0853_08750 PF13439 Glycosyltransferase Family 4 D0853_08785 PF00534 Glycosyl transferases group 1 D0853_08785 PF13439 Glycosyltransferase Family 4 D0853_08790 PF00535 Glycosyl transferase family 2 D0853_08795 PF02397 Bacterial sugar transferase D0853_08805 PF02028 BCCT, betaine/carnitine/choline family transporter D0853_08820 PF00271 Helicase conserved C-terminal domain D0853_08820 PF00270 DEAD/DEAH box helicase D0853_08820 PF04408 Helicase associated domain (HA2) D0853_08820 PF11898 Domain of unknown function (DUF3418) D0853_08820 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold D0853_08825 PF02525 Flavodoxin-like fold D0853_08835 PF02613 Nitrate reductase delta subunit D0853_08840 PF04976 DMSO reductase anchor subunit (DmsC) D0853_08845 PF13247 4Fe-4S dicluster domain D0853_08845 PF12800 4Fe-4S binding domain D0853_08850 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D0853_08850 PF00384 Molybdopterin oxidoreductase D0853_08850 PF01568 Molydopterin dinucleotide binding domain D0853_08880 PF17158 Membrane-associated sensor, integral membrane domain D0853_08880 PF00990 Diguanylate cyclase, GGDEF domain D0853_08890 PF00012 Hsp70 protein D0853_08895 PF00012 Hsp70 protein D0853_08925 PF00664 ABC transporter transmembrane region D0853_08925 PF00005 ABC transporter D0853_08930 PF00664 ABC transporter transmembrane region D0853_08930 PF00005 ABC transporter D0853_08955 PF03222 Tryptophan/tyrosine permease family D0853_08960 PF00465 Iron-containing alcohol dehydrogenase D0853_08970 PF01966 HD domain D0853_09050 PF01037 Lrp/AsnC ligand binding domain D0853_09085 PF00069 Protein kinase domain D0853_09110 PF04717 Type VI secretion system, phage-baseplate injector D0853_09115 PF05638 Type VI secretion system effector, Hcp D0853_09120 PF10431 C-terminal, D2-small domain, of ClpB protein D0853_09120 PF17871 AAA lid domain D0853_09120 PF00004 ATPase family associated with various cellular activities (AAA) D0853_09120 PF07724 AAA domain (Cdc48 subfamily) D0853_09125 PF02954 Bacterial regulatory protein, Fis family D0853_09125 PF00158 Sigma-54 interaction domain D0853_09150 PF01551 Peptidase family M23 D0853_09150 PF08525 Opacity-associated protein A N-terminal motif D0853_09150 PF01476 LysM domain D0853_09160 PF03741 Integral membrane protein TerC family D0853_09170 PF04055 Radical SAM superfamily D0853_09175 PF11230 Protein of unknown function (DUF3029) D0853_09180 PF01810 LysE type translocator D0853_09185 PF01966 HD domain D0853_09185 PF11871 Domain of unknown function (DUF3391) D0853_09190 PF00990 Diguanylate cyclase, GGDEF domain D0853_09190 PF03707 Bacterial signalling protein N terminal repeat D0853_09190 PF00563 EAL domain D0853_09195 PF00072 Response regulator receiver domain D0853_09195 PF02954 Bacterial regulatory protein, Fis family D0853_09195 PF00158 Sigma-54 interaction domain D0853_09200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_09200 PF00497 Bacterial extracellular solute-binding proteins, family 3 D0853_09200 PF00512 His Kinase A (phospho-acceptor) domain D0853_09205 PF00939 Sodium:sulfate symporter transmembrane region D0853_09220 PF00300 Histidine phosphatase superfamily (branch 1) D0853_09240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_09240 PF03466 LysR substrate binding domain D0853_09245 PF08543 Phosphomethylpyrimidine kinase D0853_09250 PF07687 Peptidase dimerisation domain D0853_09250 PF01546 Peptidase family M20/M25/M40 D0853_09255 PF00924 Mechanosensitive ion channel D0853_09255 PF12795 Mechanosensitive ion channel porin domain D0853_09255 PF12794 Mechanosensitive ion channel inner membrane domain 1 D0853_09270 PF00005 ABC transporter D0853_09275 PF02405 Permease MlaE D0853_09290 PF13533 Biotin-lipoyl like D0853_09335 PF02798 Glutathione S-transferase, N-terminal domain D0853_09335 PF14497 Glutathione S-transferase, C-terminal domain D0853_09345 PF04209 homogentisate 1,2-dioxygenase D0853_09350 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D0853_09360 PF07687 Peptidase dimerisation domain D0853_09360 PF01546 Peptidase family M20/M25/M40 D0853_09365 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D0853_09370 PF00528 Binding-protein-dependent transport system inner membrane component D0853_09375 PF00528 Binding-protein-dependent transport system inner membrane component D0853_09375 PF12911 N-terminal TM domain of oligopeptide transport permease C D0853_09380 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D0853_09380 PF00005 ABC transporter D0853_09385 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D0853_09385 PF00005 ABC transporter D0853_09400 PF08453 Peptidase family M9 N-terminal D0853_09400 PF01752 Collagenase D0853_09415 PF00528 Binding-protein-dependent transport system inner membrane component D0853_09420 PF00528 Binding-protein-dependent transport system inner membrane component D0853_09425 PF00005 ABC transporter D0853_09425 PF08402 TOBE domain D0853_09430 PF00701 Dihydrodipicolinate synthetase family D0853_09435 PF02423 Ornithine cyclodeaminase/mu-crystallin family D0853_09455 PF05544 Proline racemase D0853_09460 PF00171 Aldehyde dehydrogenase family D0853_09465 PF00392 Bacterial regulatory proteins, gntR family D0853_09485 PF05971 RNA methyltransferase D0853_09490 PF01863 Protein of unknown function DUF45 D0853_09495 PF04991 LicD family D0853_09500 PF16363 GDP-mannose 4,6 dehydratase D0853_09505 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase D0853_09525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_09525 PF03466 LysR substrate binding domain D0853_09545 PF00005 ABC transporter D0853_09550 PF01032 FecCD transport family D0853_09555 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family D0853_09575 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase D0853_09580 PF02654 Cobalamin-5-phosphate synthase D0853_09585 PF02277 Phosphoribosyltransferase D0853_09590 PF13460 NAD(P)H-binding D0853_09600 PF08411 Exonuclease C-terminal D0853_09600 PF00929 Exonuclease D0853_09605 PF03788 LrgA family D0853_09610 PF04172 LrgB-like family D0853_09615 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D0853_09615 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region D0853_09620 PF02222 ATP-grasp domain D0853_09625 PF05724 Thiopurine S-methyltransferase (TPMT) D0853_09635 PF00216 Bacterial DNA-binding protein D0853_09650 PF03483 B3/4 domain D0853_09650 PF03484 tRNA synthetase B5 domain D0853_09650 PF03147 Ferredoxin-fold anticodon binding domain D0853_09650 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain D0853_09650 PF01588 Putative tRNA binding domain D0853_09655 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain D0853_09655 PF01409 tRNA synthetases class II core domain (F) D0853_09660 PF17158 Membrane-associated sensor, integral membrane domain D0853_09660 PF00990 Diguanylate cyclase, GGDEF domain D0853_09690 PF01906 Putative heavy-metal-binding D0853_09695 PF00453 Ribosomal protein L20 D0853_09700 PF01632 Ribosomal protein L35 D0853_09705 PF05198 Translation initiation factor IF-3, N-terminal domain D0853_09705 PF00707 Translation initiation factor IF-3, C-terminal domain D0853_09710 PF02824 TGS domain D0853_09710 PF03129 Anticodon binding domain D0853_09710 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D0853_09710 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D0853_09725 PF07702 UTRA domain D0853_09725 PF00392 Bacterial regulatory proteins, gntR family D0853_09730 PF01979 Amidohydrolase family D0853_09735 PF00491 Arginase family D0853_09740 PF17391 Urocanase N-terminal domain D0853_09740 PF17392 Urocanase C-terminal domain D0853_09740 PF01175 Urocanase Rossmann-like domain D0853_09745 PF00221 Aromatic amino acid lyase D0853_09755 PF04191 Phospholipid methyltransferase D0853_09760 PF13183 4Fe-4S dicluster domain D0853_09760 PF01565 FAD binding domain D0853_09760 PF02913 FAD linked oxidases, C-terminal domain D0853_09775 PF00691 OmpA family D0853_09775 PF05736 OprF membrane domain D0853_09795 PF01259 SAICAR synthetase D0853_09800 PF16655 PhoD-like phosphatase, N-terminal domain D0853_09800 PF09423 PhoD-like phosphatase D0853_09810 PF02253 Phospholipase A1 D0853_09815 PF04408 Helicase associated domain (HA2) D0853_09815 PF00271 Helicase conserved C-terminal domain D0853_09815 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold D0853_09815 PF00270 DEAD/DEAH box helicase D0853_09820 PF00390 Malic enzyme, N-terminal domain D0853_09820 PF03949 Malic enzyme, NAD binding domain D0853_09825 PF02698 DUF218 domain D0853_09830 PF00939 Sodium:sulfate symporter transmembrane region D0853_09835 PF00990 Diguanylate cyclase, GGDEF domain D0853_09835 PF00072 Response regulator receiver domain D0853_09845 PF00266 Aminotransferase class-V D0853_09855 PF07992 Pyridine nucleotide-disulphide oxidoreductase D0853_09860 PF00664 ABC transporter transmembrane region D0853_09860 PF00005 ABC transporter D0853_09865 PF00005 ABC transporter D0853_09865 PF00664 ABC transporter transmembrane region D0853_09870 PF00291 Pyridoxal-phosphate dependent enzyme D0853_09875 PF00266 Aminotransferase class-V D0853_09885 PF00497 Bacterial extracellular solute-binding proteins, family 3 D0853_09885 PF00512 His Kinase A (phospho-acceptor) domain D0853_09885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_09900 PF04993 TfoX N-terminal domain D0853_09900 PF04994 TfoX C-terminal domain D0853_09920 PF03956 Lysine exporter LysO D0853_09930 PF00282 Pyridoxal-dependent decarboxylase conserved domain D0853_09935 PF01380 SIS domain D0853_09935 PF01418 Helix-turn-helix domain, rpiR family D0853_09940 PF00465 Iron-containing alcohol dehydrogenase D0853_09950 PF00462 Glutaredoxin D0853_09955 PF02080 TrkA-C domain D0853_09955 PF06826 Predicted Permease Membrane Region D0853_09960 PF12241 Trans-2-enoyl-CoA reductase catalytic region D0853_09960 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase D0853_09960 PF07055 Enoyl reductase FAD binding domain D0853_09965 PF09317 Domain of unknown function (DUF1974) D0853_09965 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D0853_09965 PF02770 Acyl-CoA dehydrogenase, middle domain D0853_09965 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D0853_09970 PF16295 Tetracyclin repressor-like, C-terminal domain D0853_09970 PF00440 Bacterial regulatory proteins, tetR family D0853_09975 PF06965 Na+/H+ antiporter 1 D0853_09990 PF00005 ABC transporter D0853_09995 PF01554 MatE D0853_10000 PF13460 NAD(P)H-binding D0853_10000 PF11066 Protein of unknown function (DUF2867) D0853_10005 PF03264 NapC/NirT cytochrome c family, N-terminal region D0853_10020 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) D0853_10035 PF07690 Major Facilitator Superfamily D0853_10040 PF01479 S4 domain D0853_10040 PF00849 RNA pseudouridylate synthase D0853_10045 PF04851 Type III restriction enzyme, res subunit D0853_10045 PF00271 Helicase conserved C-terminal domain D0853_10055 PF00072 Response regulator receiver domain D0853_10055 PF00486 Transcriptional regulatory protein, C terminal D0853_10060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_10060 PF00512 His Kinase A (phospho-acceptor) domain D0853_10060 PF00672 HAMP domain D0853_10065 PF01386 Ribosomal L25p family D0853_10080 PF02872 5'-nucleotidase, C-terminal domain D0853_10080 PF00149 Calcineurin-like phosphoesterase D0853_10095 PF06945 Protein of unknown function (DUF1289) D0853_10105 PF00196 Bacterial regulatory proteins, luxR family D0853_10105 PF00072 Response regulator receiver domain D0853_10110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_10110 PF00512 His Kinase A (phospho-acceptor) domain D0853_10120 PF07992 Pyridine nucleotide-disulphide oxidoreductase D0853_10120 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster D0853_10130 PF09335 SNARE associated Golgi protein D0853_10135 PF13416 Bacterial extracellular solute-binding protein D0853_10140 PF00528 Binding-protein-dependent transport system inner membrane component D0853_10145 PF00005 ABC transporter D0853_10150 PF01066 CDP-alcohol phosphatidyltransferase D0853_10165 PF01590 GAF domain D0853_10165 PF00158 Sigma-54 interaction domain D0853_10170 PF03063 Prismane/CO dehydrogenase family D0853_10175 PF00970 Oxidoreductase FAD-binding domain D0853_10175 PF00111 2Fe-2S iron-sulfur cluster binding domain D0853_10175 PF00175 Oxidoreductase NAD-binding domain D0853_10185 PF00849 RNA pseudouridylate synthase D0853_10190 PF12729 Four helix bundle sensory module for signal transduction D0853_10190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D0853_10190 PF00672 HAMP domain D0853_10195 PF00209 Sodium:neurotransmitter symporter family D0853_10200 PF13091 PLD-like domain D0853_10200 PF13396 Phospholipase_D-nuclease N-terminal D0853_10205 PF01053 Cys/Met metabolism PLP-dependent enzyme D0853_10210 PF00561 alpha/beta hydrolase fold D0853_10215 PF03280 Proteobacterial lipase chaperone protein D0853_10220 PF03352 Methyladenine glycosylase D0853_10225 PF00873 AcrB/AcrD/AcrF family D0853_10230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D0853_10235 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D0853_10240 PF04024 PspC domain D0853_10245 PF06667 Phage shock protein B D0853_10250 PF04012 PspA/IM30 family D0853_10255 PF00158 Sigma-54 interaction domain D0853_10255 PF02954 Bacterial regulatory protein, Fis family D0853_10260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D0853_10265 PF00528 Binding-protein-dependent transport system inner membrane component D0853_10270 PF00528 Binding-protein-dependent transport system inner membrane component D0853_10270 PF12911 N-terminal TM domain of oligopeptide transport permease C D0853_10275 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D0853_10275 PF00005 ABC transporter D0853_10280 PF00005 ABC transporter D0853_10290 PF01368 DHH family D0853_10290 PF02833 DHHA2 domain D0853_10300 PF16874 Glycosyl hydrolase family 36 C-terminal domain D0853_10300 PF16875 Glycosyl hydrolase family 36 N-terminal domain D0853_10305 PF18364 Molybdopterin oxidoreductase N-terminal domain D0853_10305 PF01568 Molydopterin dinucleotide binding domain D0853_10305 PF00384 Molybdopterin oxidoreductase D0853_10310 PF03264 NapC/NirT cytochrome c family, N-terminal region D0853_10315 PF06796 Periplasmic nitrate reductase protein NapE D0853_10320 PF03649 Uncharacterised protein family (UPF0014) D0853_10330 PF01226 Formate/nitrite transporter D0853_10355 PF02698 DUF218 domain D0853_10360 PF00265 Thymidine kinase D0853_10365 PF09190 DALR domain D0853_10365 PF01406 tRNA synthetases class I (C) catalytic domain D0853_10370 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD D0853_10375 PF00149 Calcineurin-like phosphoesterase D0853_10380 PF00563 EAL domain D0853_10380 PF08668 HDOD domain D0853_10390 PF02810 SEC-C motif D0853_10395 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase D0853_10395 PF01502 Phosphoribosyl-AMP cyclohydrolase D0853_10400 PF00977 Histidine biosynthesis protein D0853_10405 PF00977 Histidine biosynthesis protein D0853_10410 PF00117 Glutamine amidotransferase class-I D0853_10415 PF08645 Polynucleotide kinase 3 phosphatase D0853_10415 PF00475 Imidazoleglycerol-phosphate dehydratase D0853_10420 PF00155 Aminotransferase class I and II D0853_10425 PF00815 Histidinol dehydrogenase D0853_10430 PF08029 HisG, C-terminal domain D0853_10430 PF01634 ATP phosphoribosyltransferase D0853_10435 PF00158 Sigma-54 interaction domain D0853_10435 PF00072 Response regulator receiver domain D0853_10435 PF02954 Bacterial regulatory protein, Fis family D0853_10445 PF03553 Na+/H+ antiporter family D0853_10450 PF00816 H-NS histone family D0853_10455 PF00294 pfkB family carbohydrate kinase D0853_10470 PF04356 Protein of unknown function (DUF489) D0853_10475 PF08328 Adenylosuccinate lyase C-terminal D0853_10475 PF00206 Lyase D0853_10515 PF00106 short chain dehydrogenase D0853_10525 PF01435 Peptidase family M48 D0853_10540 PF08241 Methyltransferase domain D0853_10545 PF00155 Aminotransferase class I and II D0853_10550 PF06968 Biotin and Thiamin Synthesis associated domain D0853_10550 PF04055 Radical SAM superfamily D0853_10560 PF01258 Prokaryotic dksA/traR C4-type zinc finger D0853_10575 PF02403 Seryl-tRNA synthetase N-terminal domain D0853_10575 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D0853_10580 PF12002 MgsA AAA+ ATPase C terminal D0853_10580 PF16193 AAA C-terminal domain D0853_10580 PF00004 ATPase family associated with various cellular activities (AAA) D0853_10585 PF03548 Outer membrane lipoprotein carrier protein LolA D0853_10590 PF01580 FtsK/SpoIIIE family D0853_10590 PF13491 4TM region of DNA translocase FtsK/SpoIIIE D0853_10590 PF17854 FtsK alpha domain D0853_10590 PF09397 Ftsk gamma domain D0853_10595 PF01037 Lrp/AsnC ligand binding domain D0853_10600 PF05222 Alanine dehydrogenase/PNT, N-terminal domain D0853_10600 PF01262 Alanine dehydrogenase/PNT, C-terminal domain D0853_10610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_10610 PF03466 LysR substrate binding domain D0853_10620 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) D0853_10625 PF03372 Endonuclease/Exonuclease/phosphatase family D0853_10635 PF00579 tRNA synthetases class I (W and Y) D0853_10655 PF00873 AcrB/AcrD/AcrF family D0853_10660 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D0853_10660 PF00529 HlyD membrane-fusion protein of T1SS D0853_10675 PF02743 Cache domain D0853_10675 PF00672 HAMP domain D0853_10675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D0853_10690 PF00899 ThiF family D0853_10700 PF00580 UvrD/REP helicase N-terminal domain D0853_10700 PF13361 UvrD-like helicase C-terminal domain D0853_10735 PF00589 Phage integrase family D0853_10735 PF13356 Arm DNA-binding domain D0853_10780 PF06610 L-alanine exporter D0853_10785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_10785 PF00512 His Kinase A (phospho-acceptor) domain D0853_10785 PF09308 LuxQ, periplasmic D0853_10785 PF00072 Response regulator receiver domain D0853_10795 PF03738 Glutathionylspermidine synthase preATP-grasp D0853_10805 PF03994 Domain of Unknown Function (DUF350) D0853_10815 PF02445 Quinolinate synthetase A protein D0853_10820 PF13174 Tetratricopeptide repeat D0853_10820 PF16331 TolA binding protein trimerisation D0853_10825 PF00691 OmpA family D0853_10830 PF04052 TolB amino-terminal domain D0853_10830 PF07676 WD40-like Beta Propeller Repeat D0853_10840 PF02472 Biopolymer transport protein ExbD/TolR D0853_10845 PF01618 MotA/TolQ/ExbB proton channel family D0853_10850 PF03061 Thioesterase superfamily D0853_10860 PF08173 Membrane bound YbgT-like protein D0853_10865 PF02322 Cytochrome bd terminal oxidase subunit II D0853_10870 PF01654 Cytochrome bd terminal oxidase subunit I D0853_10875 PF05496 Holliday junction DNA helicase RuvB P-loop domain D0853_10875 PF05491 RuvB C-terminal winged helix domain D0853_10875 PF17864 RuvB AAA lid domain D0853_10880 PF07499 RuvA, C-terminal domain D0853_10880 PF01330 RuvA N terminal domain D0853_10885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D0853_10885 PF02203 Tar ligand binding domain homologue D0853_10885 PF00672 HAMP domain D0853_10890 PF02075 Crossover junction endodeoxyribonuclease RuvC D0853_10895 PF00152 tRNA synthetases class II (D, K and N) D0853_10895 PF02938 GAD domain D0853_10895 PF01336 OB-fold nucleic acid binding domain D0853_10900 PF01904 Protein of unknown function DUF72 D0853_10905 PF13649 Methyltransferase domain D0853_10910 PF08003 Protein of unknown function (DUF1698) D0853_10920 PF08443 RimK-like ATP-grasp domain D0853_10920 PF18030 RimK PreATP-grasp domain D0853_10930 PF08443 RimK-like ATP-grasp domain D0853_10930 PF18030 RimK PreATP-grasp domain D0853_10940 PF16330 MukB hinge domain D0853_10940 PF04310 MukB N-terminal D0853_10945 PF04288 MukE-like family D0853_10950 PF03882 MukF winged-helix domain D0853_10950 PF17193 MukF C-terminal domain D0853_10950 PF17192 MukF middle domain D0853_10960 PF02698 DUF218 domain D0853_10965 PF00486 Transcriptional regulatory protein, C terminal D0853_10965 PF00072 Response regulator receiver domain D0853_10970 PF02613 Nitrate reductase delta subunit D0853_10975 PF00356 Bacterial regulatory proteins, lacI family D0853_10980 PF04993 TfoX N-terminal domain D0853_10980 PF04994 TfoX C-terminal domain D0853_11000 PF08323 Starch synthase catalytic domain D0853_11000 PF00534 Glycosyl transferases group 1 D0853_11005 PF00483 Nucleotidyl transferase D0853_11010 PF08272 Topoisomerase I zinc-ribbon-like D0853_11010 PF01396 Topoisomerase DNA binding C4 zinc finger D0853_11010 PF01751 Toprim domain D0853_11010 PF01131 DNA topoisomerase D0853_11015 PF10692 Protein of unknown function (DUF2498) D0853_11020 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D0853_11030 PF03588 Leucyl/phenylalanyl-tRNA protein transferase D0853_11035 PF04377 Arginine-tRNA-protein transferase, C terminus D0853_11035 PF04376 Arginine-tRNA-protein transferase, N terminus D0853_11040 PF01176 Translation initiation factor 1A / IF-1 D0853_11050 PF07724 AAA domain (Cdc48 subfamily) D0853_11050 PF02861 Clp amino terminal domain, pathogenicity island component D0853_11050 PF10431 C-terminal, D2-small domain, of ClpB protein D0853_11050 PF00004 ATPase family associated with various cellular activities (AAA) D0853_11050 PF17871 AAA lid domain D0853_11055 PF02617 ATP-dependent Clp protease adaptor protein ClpS D0853_11060 PF00313 'Cold-shock' DNA-binding domain D0853_11065 PF03971 Monomeric isocitrate dehydrogenase D0853_11070 PF00849 RNA pseudouridylate synthase D0853_11075 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) D0853_11085 PF06733 DEAD_2 D0853_11085 PF13307 Helicase C-terminal domain D0853_11090 PF01925 Sulfite exporter TauE/SafE D0853_11095 PF07445 Primosomal replication protein priC D0853_11100 PF10689 Protein of unknown function (DUF2496) D0853_11105 PF03372 Endonuclease/Exonuclease/phosphatase family D0853_11115 PF00528 Binding-protein-dependent transport system inner membrane component D0853_11120 PF00528 Binding-protein-dependent transport system inner membrane component D0853_11125 PF00497 Bacterial extracellular solute-binding proteins, family 3 D0853_11130 PF00005 ABC transporter D0853_11150 PF02901 Pyruvate formate lyase-like D0853_11150 PF01228 Glycine radical D0853_11160 PF04055 Radical SAM superfamily D0853_11170 PF03887 YfbU domain D0853_11180 PF08298 PrkA AAA domain D0853_11180 PF06798 PrkA serine protein kinase C-terminal domain D0853_11185 PF04285 Protein of unknown function (DUF444) D0853_11190 PF04293 SpoVR like protein D0853_11195 PF02348 Cytidylyltransferase D0853_11200 PF03966 Trm112p-like protein D0853_11205 PF02606 Tetraacyldisaccharide-1-P 4'-kinase D0853_11210 PF00005 ABC transporter D0853_11210 PF00664 ABC transporter transmembrane region D0853_11215 PF03772 Competence protein D0853_11215 PF13567 Domain of unknown function (DUF4131) D0853_11215 PF00753 Metallo-beta-lactamase superfamily D0853_11225 PF02687 FtsX-like permease family D0853_11225 PF12704 MacB-like periplasmic core domain D0853_11230 PF00005 ABC transporter D0853_11235 PF02687 FtsX-like permease family D0853_11235 PF12704 MacB-like periplasmic core domain D0853_11245 PF00270 DEAD/DEAH box helicase D0853_11245 PF02559 CarD-like/TRCF domain D0853_11245 PF17757 UvrB interaction domain D0853_11245 PF00271 Helicase conserved C-terminal domain D0853_11245 PF03461 TRCF domain D0853_11265 PF07992 Pyridine nucleotide-disulphide oxidoreductase D0853_11275 PF05728 Uncharacterised protein family (UPF0227) D0853_11285 PF13036 Peptidoglycan-synthase activator LpoB D0853_11285 PF08139 Prokaryotic membrane lipoprotein lipid attachment site D0853_11300 PF01230 HIT domain D0853_11305 PF00672 HAMP domain D0853_11305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D0853_11320 PF01048 Phosphorylase superfamily D0853_11325 PF00403 Heavy-metal-associated domain D0853_11330 PF00571 CBS domain D0853_11330 PF00478 IMP dehydrogenase / GMP reductase domain D0853_11345 PF11953 Domain of unknown function (DUF3470) D0853_11345 PF00037 4Fe-4S binding domain D0853_11350 PF08032 RNA 2'-O ribose methyltransferase substrate binding D0853_11350 PF00588 SpoU rRNA Methylase family D0853_11360 PF00990 Diguanylate cyclase, GGDEF domain D0853_11360 PF17152 Periplasmic sensor domain D0853_11370 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain D0853_11375 PF09619 Type III secretion system lipoprotein chaperone (YscW) D0853_11390 PF01037 Lrp/AsnC ligand binding domain D0853_11390 PF13404 AsnC-type helix-turn-helix domain D0853_11395 PF00291 Pyridoxal-phosphate dependent enzyme D0853_11420 PF00873 AcrB/AcrD/AcrF family D0853_11425 PF13533 Biotin-lipoyl like D0853_11470 PF07690 Major Facilitator Superfamily D0853_11475 PF03601 Conserved hypothetical protein 698 D0853_11485 PF00501 AMP-binding enzyme D0853_11485 PF13193 AMP-binding enzyme C-terminal domain D0853_11490 PF13378 Enolase C-terminal domain-like D0853_11495 PF00378 Enoyl-CoA hydratase/isomerase D0853_11500 PF12697 Alpha/beta hydrolase family D0853_11505 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D0853_11505 PF16582 Middle domain of thiamine pyrophosphate D0853_11505 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D0853_11510 PF00425 chorismate binding enzyme D0853_11515 PF00155 Aminotransferase class I and II D0853_11525 PF01966 HD domain D0853_11525 PF13286 Phosphohydrolase-associated domain D0853_11545 PF13145 PPIC-type PPIASE domain D0853_11550 PF00216 Bacterial DNA-binding protein D0853_11555 PF02190 ATP-dependent protease La (LON) substrate-binding domain D0853_11555 PF05362 Lon protease (S16) C-terminal proteolytic domain D0853_11555 PF00004 ATPase family associated with various cellular activities (AAA) D0853_11560 PF07724 AAA domain (Cdc48 subfamily) D0853_11560 PF10431 C-terminal, D2-small domain, of ClpB protein D0853_11560 PF06689 ClpX C4-type zinc finger D0853_11565 PF00574 Clp protease D0853_11570 PF05698 Bacterial trigger factor protein (TF) C-terminus D0853_11570 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D0853_11570 PF05697 Bacterial trigger factor protein (TF) D0853_11575 PF00512 His Kinase A (phospho-acceptor) domain D0853_11575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_11575 PF02743 Cache domain D0853_11580 PF00158 Sigma-54 interaction domain D0853_11580 PF00072 Response regulator receiver domain D0853_11580 PF02954 Bacterial regulatory protein, Fis family D0853_11590 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D0853_11595 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component D0853_11600 PF03480 Bacterial extracellular solute-binding protein, family 7 D0853_11605 PF02696 Uncharacterized ACR, YdiU/UPF0061 family D0853_11625 PF02386 Cation transport protein D0853_11630 PF02080 TrkA-C domain D0853_11630 PF02254 TrkA-N domain D0853_11635 PF00270 DEAD/DEAH box helicase D0853_11635 PF00271 Helicase conserved C-terminal domain D0853_11640 PF00571 CBS domain D0853_11640 PF03471 Transporter associated domain D0853_11640 PF01595 Cyclin M transmembrane N-terminal domain D0853_11650 PF04820 Tryptophan halogenase D0853_11675 PF00550 Phosphopantetheine attachment site D0853_11680 PF00550 Phosphopantetheine attachment site D0853_11695 PF07977 FabA-like domain D0853_11700 PF00535 Glycosyl transferase family 2 D0853_11705 PF00221 Aromatic amino acid lyase D0853_11730 PF00109 Beta-ketoacyl synthase, N-terminal domain D0853_11730 PF02801 Beta-ketoacyl synthase, C-terminal domain D0853_11735 PF07977 FabA-like domain D0853_11745 PF02801 Beta-ketoacyl synthase, C-terminal domain D0853_11745 PF00109 Beta-ketoacyl synthase, N-terminal domain D0853_11760 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain D0853_11760 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain D0853_11765 PF07670 Nucleoside recognition D0853_11765 PF07662 Na+ dependent nucleoside transporter C-terminus D0853_11765 PF01773 Na+ dependent nucleoside transporter N-terminus D0853_11770 PF03466 LysR substrate binding domain D0853_11770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_11775 PF13406 Transglycosylase SLT domain D0853_11780 PF05166 YcgL domain D0853_11785 PF03775 Septum formation inhibitor MinC, C-terminal domain D0853_11785 PF05209 Septum formation inhibitor MinC, N-terminal domain D0853_11790 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain D0853_11795 PF03776 Septum formation topological specificity factor MinE D0853_11800 PF01612 3'-5' exonuclease D0853_11800 PF00570 HRDC domain D0853_11805 PF13193 AMP-binding enzyme C-terminal domain D0853_11805 PF00501 AMP-binding enzyme D0853_11810 PF00561 alpha/beta hydrolase fold D0853_11825 PF00814 Glycoprotease family D0853_11830 PF04851 Type III restriction enzyme, res subunit D0853_11830 PF13307 Helicase C-terminal domain D0853_11835 PF01842 ACT domain D0853_11835 PF00551 Formyl transferase D0853_11840 PF06185 YecM protein D0853_11850 PF05746 DALR anticodon binding domain D0853_11850 PF03485 Arginyl tRNA synthetase N terminal domain D0853_11850 PF00750 tRNA synthetases class I (R) D0853_11865 PF07670 Nucleoside recognition D0853_11865 PF02421 Ferrous iron transport protein B D0853_11865 PF17910 FeoB cytosolic helical domain D0853_11865 PF07664 Ferrous iron transport protein B C terminus D0853_11870 PF04023 FeoA domain D0853_11885 PF02311 AraC-like ligand binding domain D0853_11885 PF12833 Helix-turn-helix domain D0853_11890 PF01297 Zinc-uptake complex component A periplasmic D0853_11895 PF00005 ABC transporter D0853_11900 PF00950 ABC 3 transport family D0853_11905 PF02629 CoA binding domain D0853_11905 PF00549 CoA-ligase D0853_11910 PF08442 ATP-grasp domain D0853_11910 PF00549 CoA-ligase D0853_11915 PF02817 e3 binding domain D0853_11915 PF00364 Biotin-requiring enzyme D0853_11915 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D0853_11920 PF00676 Dehydrogenase E1 component D0853_11920 PF16078 2-oxoglutarate dehydrogenase N-terminus D0853_11920 PF02779 Transketolase, pyrimidine binding domain D0853_11920 PF16870 2-oxoglutarate dehydrogenase C-terminal D0853_11925 PF13085 2Fe-2S iron-sulfur cluster binding domain D0853_11930 PF00890 FAD binding domain D0853_11930 PF02910 Fumarate reductase flavoprotein C-term D0853_11935 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit D0853_11940 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit D0853_11945 PF00285 Citrate synthase, C-terminal domain D0853_11950 PF01784 NIF3 (NGG1p interacting factor 3) D0853_11960 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D0853_11960 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D0853_11960 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D0853_11960 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D0853_11965 PF03925 SeqA protein C-terminal domain D0853_11965 PF17206 SeqA protein N-terminal domain D0853_11970 PF00561 alpha/beta hydrolase fold D0853_11980 PF00258 Flavodoxin D0853_11990 PF01475 Ferric uptake regulator family D0853_11995 PF00749 tRNA synthetases class I (E and Q), catalytic domain D0853_11995 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain D0853_12000 PF02378 Phosphotransferase system, EIIC D0853_12000 PF00367 phosphotransferase system, EIIB D0853_12000 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 D0853_12010 PF01979 Amidohydrolase family D0853_12015 PF00480 ROK family D0853_12015 PF01047 MarR family D0853_12020 PF00999 Sodium/hydrogen exchanger family D0853_12020 PF02254 TrkA-N domain D0853_12025 PF13537 Glutamine amidotransferase domain D0853_12025 PF00733 Asparagine synthase D0853_12030 PF02357 Transcription termination factor nusG D0853_12035 PF00854 POT family D0853_12040 PF00762 Ferrochelatase D0853_12045 PF05191 Adenylate kinase, active site lid D0853_12050 PF00183 Hsp90 protein D0853_12050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_12055 PF00486 Transcriptional regulatory protein, C terminal D0853_12060 PF17323 Trans-membrane regulatory protein ToxS D0853_12075 PF12850 Calcineurin-like phosphoesterase superfamily domain D0853_12095 PF07556 Protein of unknown function (DUF1538) D0853_12100 PF07556 Protein of unknown function (DUF1538) D0853_12105 PF08338 Domain of unknown function (DUF1731) D0853_12105 PF01370 NAD dependent epimerase/dehydratase family D0853_12110 PF00106 short chain dehydrogenase D0853_12120 PF00085 Thioredoxin D0853_12125 PF01145 SPFH domain / Band 7 family D0853_12125 PF16200 C-terminal region of band_7 D0853_12140 PF03573 outer membrane porin, OprD family D0853_12155 PF12826 Helix-hairpin-helix motif D0853_12155 PF00533 BRCA1 C Terminus (BRCT) domain D0853_12155 PF03120 NAD-dependent DNA ligase OB-fold domain D0853_12155 PF03119 NAD-dependent DNA ligase C4 zinc finger domain D0853_12155 PF01653 NAD-dependent DNA ligase adenylation domain D0853_12160 PF04354 ZipA, C-terminal FtsZ-binding domain D0853_12170 PF00291 Pyridoxal-phosphate dependent enzyme D0853_12180 PF00381 PTS HPr component phosphorylation site D0853_12185 PF00391 PEP-utilising enzyme, mobile domain D0853_12185 PF05524 PEP-utilising enzyme, N-terminal D0853_12185 PF02896 PEP-utilising enzyme, TIM barrel domain D0853_12190 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 D0853_12200 PF00669 Bacterial flagellin N-terminal helical region D0853_12200 PF07196 Flagellin hook IN motif D0853_12200 PF00700 Bacterial flagellin C-terminal helical region D0853_12205 PF00669 Bacterial flagellin N-terminal helical region D0853_12205 PF07196 Flagellin hook IN motif D0853_12205 PF00700 Bacterial flagellin C-terminal helical region D0853_12215 PF00700 Bacterial flagellin C-terminal helical region D0853_12215 PF07196 Flagellin hook IN motif D0853_12215 PF00669 Bacterial flagellin N-terminal helical region D0853_12225 PF00669 Bacterial flagellin N-terminal helical region D0853_12230 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D0853_12230 PF07196 Flagellin hook IN motif D0853_12235 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase D0853_12235 PF10135 Rod binding protein D0853_12240 PF02119 Flagellar P-ring protein D0853_12245 PF02107 Flagellar L-ring protein D0853_12250 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D0853_12250 PF00460 Flagella basal body rod protein D0853_12255 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D0853_12255 PF00460 Flagella basal body rod protein D0853_12265 PF00460 Flagella basal body rod protein D0853_12265 PF07559 Flagellar basal body protein FlaE D0853_12265 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D0853_12270 PF13861 FlgD Tudor-like domain D0853_12270 PF13860 FlgD Ig-like domain D0853_12270 PF03963 Flagellar hook capping protein - N-terminal region D0853_12275 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D0853_12275 PF00460 Flagella basal body rod protein D0853_12280 PF00460 Flagella basal body rod protein D0853_12285 PF01739 CheR methyltransferase, SAM binding domain D0853_12285 PF03705 CheR methyltransferase, all-alpha domain D0853_12290 PF01584 CheW-like domain D0853_12290 PF00072 Response regulator receiver domain D0853_12340 PF00691 OmpA family D0853_12340 PF01389 OmpA-like transmembrane domain D0853_12350 PF00749 tRNA synthetases class I (E and Q), catalytic domain D0853_12355 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) D0853_12360 PF13609 Gram-negative porin D0853_12370 PF00403 Heavy-metal-associated domain D0853_12385 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain D0853_12385 PF02838 Glycosyl hydrolase family 20, domain 2 D0853_12385 PF00728 Glycosyl hydrolase family 20, catalytic domain D0853_12385 PF03173 Putative carbohydrate binding domain D0853_12410 PF01713 Smr domain D0853_12415 PF01479 S4 domain D0853_12415 PF00849 RNA pseudouridylate synthase D0853_12420 PF04073 Aminoacyl-tRNA editing domain D0853_12425 PF00149 Calcineurin-like phosphoesterase D0853_12425 PF02872 5'-nucleotidase, C-terminal domain D0853_12430 PF00793 DAHP synthetase I family D0853_12435 PF13369 Transglutaminase-like superfamily D0853_12440 PF04247 Invasion gene expression up-regulator, SirB D0853_12445 PF17827 PrmC N-terminal domain D0853_12445 PF13847 Methyltransferase domain D0853_12450 PF00472 RF-1 domain D0853_12450 PF03462 PCRF domain D0853_12455 PF01488 Shikimate / quinate 5-dehydrogenase D0853_12455 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain D0853_12455 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain D0853_12460 PF03550 Outer membrane lipoprotein LolB D0853_12465 PF00288 GHMP kinases N terminal domain D0853_12465 PF08544 GHMP kinases C terminal D0853_12470 PF14572 Phosphoribosyl synthetase-associated domain D0853_12470 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase D0853_12475 PF01195 Peptidyl-tRNA hydrolase D0853_12480 PF06071 Protein of unknown function (DUF933) D0853_12480 PF01926 50S ribosome-binding GTPase D0853_12595 PF01494 FAD binding domain D0853_12605 PF04055 Radical SAM superfamily D0853_12605 PF01938 TRAM domain D0853_12605 PF00919 Uncharacterized protein family UPF0004 D0853_12610 PF02562 PhoH-like protein D0853_12615 PF02130 Uncharacterized protein family UPF0054 D0853_12620 PF03471 Transporter associated domain D0853_12620 PF00571 CBS domain D0853_12625 PF00795 Carbon-nitrogen hydrolase D0853_12630 PF07295 Zinc-ribbon containing domain D0853_12635 PF00133 tRNA synthetases class I (I, L, M and V) D0853_12635 PF08264 Anticodon-binding domain of tRNA D0853_12635 PF13603 Leucyl-tRNA synthetase, Domain 2 D0853_12640 PF04390 Lipopolysaccharide-assembly D0853_12645 PF14840 Processivity clamp loader gamma complex DNA pol III C-term D0853_12645 PF06144 DNA polymerase III, delta subunit D0853_12655 PF02590 Predicted SPOUT methyltransferase D0853_12660 PF00905 Penicillin binding protein transpeptidase domain D0853_12660 PF03717 Penicillin-binding Protein dimerisation domain D0853_12665 PF01098 Cell cycle protein D0853_12670 PF05036 Sporulation related domain D0853_12670 PF03330 Lytic transglycolase D0853_12675 PF00768 D-alanyl-D-alanine carboxypeptidase D0853_12675 PF07943 Penicillin-binding protein 5, C-terminal domain D0853_12680 PF04359 Protein of unknown function (DUF493) D0853_12685 PF03099 Biotin/lipoate A/B protein ligase family D0853_12690 PF04055 Radical SAM superfamily D0853_12690 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family D0853_12695 PF00464 Serine hydroxymethyltransferase D0853_12700 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 D0853_12700 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) D0853_12715 PF16657 Maltogenic Amylase, C-terminal domain D0853_12715 PF00128 Alpha amylase, catalytic domain D0853_12720 PF00367 phosphotransferase system, EIIB D0853_12720 PF02378 Phosphotransferase system, EIIC D0853_12725 PF00356 Bacterial regulatory proteins, lacI family D0853_12740 PF09383 NIL domain D0853_12740 PF00005 ABC transporter D0853_12745 PF00528 Binding-protein-dependent transport system inner membrane component D0853_12750 PF03180 NLPA lipoprotein D0853_12755 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) D0853_12760 PF07348 Syd protein (SUKH-2) D0853_12765 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term D0853_12765 PF14489 QueF-like protein D0853_12775 PF00990 Diguanylate cyclase, GGDEF domain D0853_12775 PF00072 Response regulator receiver domain D0853_12780 PF03641 Possible lysine decarboxylase D0853_12780 PF11892 Domain of unknown function (DUF3412) D0853_12780 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases D0853_12785 PF01367 5'-3' exonuclease, C-terminal SAM fold D0853_12785 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain D0853_12790 PF01223 DNA/RNA non-specific endonuclease D0853_12795 PF01728 FtsJ-like methyltransferase D0853_12795 PF18125 RlmM ferredoxin-like domain D0853_12800 PF04241 Protein of unknown function (DUF423) D0853_12810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_12810 PF03466 LysR substrate binding domain D0853_12815 PF02926 THUMP domain D0853_12815 PF02568 Thiamine biosynthesis protein (ThiI) D0853_12825 PF00691 OmpA family D0853_12830 PF01618 MotA/TolQ/ExbB proton channel family D0853_12835 PF02609 Exonuclease VII small subunit D0853_12840 PF00348 Polyprenyl synthetase D0853_12845 PF02780 Transketolase, C-terminal domain D0853_12845 PF02779 Transketolase, pyrimidine binding domain D0853_12845 PF13292 1-deoxy-D-xylulose-5-phosphate synthase D0853_12850 PF04608 Phosphatidylglycerophosphatase A D0853_12855 PF02769 AIR synthase related protein, C-terminal domain D0853_12855 PF00586 AIR synthase related protein, N-terminal domain D0853_12860 PF01029 NusB family D0853_12865 PF00885 6,7-dimethyl-8-ribityllumazine synthase D0853_12870 PF00925 GTP cyclohydrolase II D0853_12870 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase D0853_12875 PF00677 Lumazine binding domain D0853_12880 PF01872 RibD C-terminal domain D0853_12880 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D0853_12885 PF03477 ATP cone domain D0853_12890 PF00171 Aldehyde dehydrogenase family D0853_12895 PF00696 Amino acid kinase family D0853_12895 PF01472 PUA domain D0853_12900 PF07417 Sigma factor-binding transcriptional regulator Crl D0853_12910 PF00156 Phosphoribosyl transferase domain D0853_12915 PF00860 Permease family D0853_12920 PF07687 Peptidase dimerisation domain D0853_12920 PF01546 Peptidase family M20/M25/M40 D0853_12945 PF02769 AIR synthase related protein, C-terminal domain D0853_12945 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal D0853_12945 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain D0853_12950 PF00497 Bacterial extracellular solute-binding proteins, family 3 D0853_12950 PF01464 Transglycosylase SLT domain D0853_12960 PF14437 MafB19-like deaminase D0853_12965 PF03806 AbgT putative transporter family D0853_12990 PF07963 Prokaryotic N-terminal methylation motif D0853_12990 PF00114 Pilin (bacterial filament) D0853_12995 PF07963 Prokaryotic N-terminal methylation motif D0853_12995 PF00114 Pilin (bacterial filament) D0853_13005 PF00684 DnaJ central domain D0853_13005 PF00226 DnaJ domain D0853_13005 PF01556 DnaJ C terminal domain D0853_13010 PF00012 Hsp70 protein D0853_13015 PF00375 Sodium:dicarboxylate symporter family D0853_13020 PF01025 GrpE D0853_13025 PF01513 ATP-NAD kinase D0853_13035 PF02463 RecF/RecN/SMC N terminal domain D0853_13040 PF04355 SmpA / OmlA family D0853_13045 PF03658 RnfH family Ubiquitin D0853_13050 PF03364 Polyketide cyclase / dehydrase and lipid transport D0853_13055 PF01668 SmpB protein D0853_13065 PF00589 Phage integrase family D0853_13065 PF13356 Arm DNA-binding domain D0853_13075 PF12833 Helix-turn-helix domain D0853_13100 PF00075 RNase H D0853_13120 PF00239 Resolvase, N terminal domain D0853_13120 PF02796 Helix-turn-helix domain of resolvase D0853_13140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_13140 PF03466 LysR substrate binding domain D0853_13145 PF00583 Acetyltransferase (GNAT) family D0853_13145 PF00795 Carbon-nitrogen hydrolase D0853_13165 PF00202 Aminotransferase class-III D0853_13170 PF01053 Cys/Met metabolism PLP-dependent enzyme D0853_13175 PF07969 Amidohydrolase family D0853_13200 PF01266 FAD dependent oxidoreductase D0853_13205 PF01235 Sodium:alanine symporter family D0853_13215 PF01184 GPR1/FUN34/yaaH family D0853_13220 PF06483 Chitinase C D0853_13220 PF00704 Glycosyl hydrolases family 18 D0853_13225 PF03553 Na+/H+ antiporter family D0853_13230 PF00117 Glutamine amidotransferase class-I D0853_13230 PF00958 GMP synthase C terminal domain D0853_13230 PF02540 NAD synthase D0853_13235 PF00571 CBS domain D0853_13235 PF00478 IMP dehydrogenase / GMP reductase domain D0853_13240 PF02601 Exonuclease VII, large subunit D0853_13240 PF13742 OB-fold nucleic acid binding domain D0853_13255 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal D0853_13255 PF01926 50S ribosome-binding GTPase D0853_13260 PF13360 PQQ-like domain D0853_13265 PF09976 Tetratricopeptide repeat-like domain D0853_13270 PF03129 Anticodon binding domain D0853_13270 PF13393 Histidyl-tRNA synthetase D0853_13275 PF04551 GcpE protein D0853_13280 PF13464 Domain of unknown function (DUF4115) D0853_13290 PF04055 Radical SAM superfamily D0853_13295 PF00334 Nucleoside diphosphate kinase D0853_13300 PF12404 Peptidase D0853_13300 PF00883 Cytosol aminopeptidase family, catalytic domain D0853_13305 PF04384 Iron-sulphur cluster assembly D0853_13310 PF00111 2Fe-2S iron-sulfur cluster binding domain D0853_13315 PF00012 Hsp70 protein D0853_13320 PF00226 DnaJ domain D0853_13320 PF07743 HSCB C-terminal oligomerisation domain D0853_13325 PF01521 Iron-sulphur cluster biosynthesis D0853_13330 PF01592 NifU-like N terminal domain D0853_13335 PF00266 Aminotransferase class-V D0853_13340 PF02082 Transcriptional regulator D0853_13345 PF00588 SpoU rRNA Methylase family D0853_13350 PF00459 Inositol monophosphatase family D0853_13360 PF02355 Protein export membrane protein D0853_13360 PF07549 SecD/SecF GG Motif D0853_13365 PF02355 Protein export membrane protein D0853_13365 PF13721 SecD export protein N-terminal TM region D0853_13365 PF07549 SecD/SecF GG Motif D0853_13370 PF02699 Preprotein translocase subunit D0853_13375 PF01702 Queuine tRNA-ribosyltransferase D0853_13380 PF02547 Queuosine biosynthesis protein D0853_13395 PF00571 CBS domain D0853_13400 PF00463 Isocitrate lyase family D0853_13405 PF01274 Malate synthase D0853_13415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_13415 PF03466 LysR substrate binding domain D0853_13420 PF10417 C-terminal domain of 1-Cys peroxiredoxin D0853_13420 PF00578 AhpC/TSA family D0853_13430 PF03932 CutC family D0853_13435 PF03976 Polyphosphate kinase 2 (PPK2) D0853_13440 PF01895 PhoU domain D0853_13445 PF00005 ABC transporter D0853_13450 PF00528 Binding-protein-dependent transport system inner membrane component D0853_13455 PF00528 Binding-protein-dependent transport system inner membrane component D0853_13460 PF17941 Polyphosphate kinase C-terminal domain 1 D0853_13460 PF02503 Polyphosphate kinase middle domain D0853_13460 PF13089 Polyphosphate kinase N-terminal domain D0853_13460 PF13090 Polyphosphate kinase C-terminal domain 2 D0853_13465 PF02541 Ppx/GppA phosphatase family D0853_13470 PF12849 PBP superfamily domain D0853_13475 PF11808 Phosphate regulon sensor protein PhoR D0853_13475 PF00989 PAS fold D0853_13475 PF00512 His Kinase A (phospho-acceptor) domain D0853_13475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_13480 PF00072 Response regulator receiver domain D0853_13480 PF00486 Transcriptional regulatory protein, C terminal D0853_13490 PF04381 Putative exonuclease, RdgC D0853_13500 PF00037 4Fe-4S binding domain D0853_13510 PF03411 Penicillin-insensitive murein endopeptidase D0853_13560 PF00004 ATPase family associated with various cellular activities (AAA) D0853_13560 PF07724 AAA domain (Cdc48 subfamily) D0853_13560 PF17871 AAA lid domain D0853_13560 PF02861 Clp amino terminal domain, pathogenicity island component D0853_13560 PF10431 C-terminal, D2-small domain, of ClpB protein D0853_13570 PF01479 S4 domain D0853_13570 PF00849 RNA pseudouridylate synthase D0853_13575 PF13525 Outer membrane lipoprotein D0853_13580 PF00497 Bacterial extracellular solute-binding proteins, family 3 D0853_13580 PF01464 Transglycosylase SLT domain D0853_13585 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein D0853_13590 PF00800 Prephenate dehydratase D0853_13590 PF01817 Chorismate mutase type II D0853_13595 PF01931 Protein of unknown function DUF84 D0853_13600 PF01371 Trp repressor protein D0853_13605 PF01464 Transglycosylase SLT domain D0853_13605 PF14718 Soluble lytic murein transglycosylase L domain D0853_13610 PF00005 ABC transporter D0853_13610 PF12848 ABC transporter D0853_13620 PF07238 PilZ domain D0853_13625 PF01551 Peptidase family M23 D0853_13625 PF04225 Opacity-associated protein A LysM-like domain D0853_13630 PF02153 Prephenate dehydrogenase D0853_13630 PF01817 Chorismate mutase type II D0853_13635 PF00793 DAHP synthetase I family D0853_13640 PF00933 Glycosyl hydrolase family 3 N terminal domain D0853_13645 PF03702 Anhydro-N-acetylmuramic acid kinase D0853_13650 PF13580 SIS domain D0853_13665 PF02554 Carbon starvation protein CstA D0853_13670 PF07694 5TMR of 5TMR-LYT D0853_13670 PF06580 Histidine kinase D0853_13675 PF00072 Response regulator receiver domain D0853_13675 PF04397 LytTr DNA-binding domain D0853_13680 PF02401 LytB protein D0853_13685 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D0853_13690 PF01252 Signal peptidase (SPase) II D0853_13695 PF08264 Anticodon-binding domain of tRNA D0853_13695 PF00133 tRNA synthetases class I (I, L, M and V) D0853_13695 PF06827 Zinc finger found in FPG and IleRS D0853_13700 PF01687 Riboflavin kinase D0853_13700 PF06574 FAD synthetase D0853_13705 PF03023 Lipid II flippase MurJ D0853_13710 PF01649 Ribosomal protein S20 D0853_13720 PF01022 Bacterial regulatory protein, arsR family D0853_13730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_13730 PF03466 LysR substrate binding domain D0853_13735 PF02690 Na+/Pi-cotransporter D0853_13745 PF00303 Thymidylate synthase D0853_13750 PF01790 Prolipoprotein diacylglyceryl transferase D0853_13755 PF01925 Sulfite exporter TauE/SafE D0853_13760 PF05524 PEP-utilising enzyme, N-terminal D0853_13760 PF00391 PEP-utilising enzyme, mobile domain D0853_13760 PF01590 GAF domain D0853_13760 PF02896 PEP-utilising enzyme, TIM barrel domain D0853_13765 PF00293 NUDIX domain D0853_13775 PF02976 DNA mismatch repair enzyme MutH D0853_13785 PF00248 Aldo/keto reductase family D0853_13795 PF02954 Bacterial regulatory protein, Fis family D0853_13795 PF00072 Response regulator receiver domain D0853_13795 PF00158 Sigma-54 interaction domain D0853_13800 PF01336 OB-fold nucleic acid binding domain D0853_13800 PF00152 tRNA synthetases class II (D, K and N) D0853_13810 PF17768 RecJ OB domain D0853_13810 PF02272 DHHA1 domain D0853_13810 PF01368 DHH family D0853_13815 PF13098 Thioredoxin-like domain D0853_13815 PF10411 Disulfide bond isomerase protein N-terminus D0853_13820 PF00589 Phage integrase family D0853_13820 PF02899 Phage integrase, N-terminal SAM-like domain D0853_13825 PF00258 Flavodoxin D0853_13830 PF05525 Branched-chain amino acid transport protein D0853_13835 PF05175 Methyltransferase small domain D0853_13840 PF00271 Helicase conserved C-terminal domain D0853_13840 PF00270 DEAD/DEAH box helicase D0853_13845 PF03883 Peroxide stress protein YaaA D0853_13850 PF01235 Sodium:alanine symporter family D0853_13865 PF03167 Uracil DNA glycosylase superfamily D0853_13875 PF01261 Xylose isomerase-like TIM barrel D0853_13880 PF01228 Glycine radical D0853_13885 PF00291 Pyridoxal-phosphate dependent enzyme D0853_13885 PF14821 Threonine synthase N terminus D0853_13890 PF08544 GHMP kinases C terminal D0853_13890 PF00288 GHMP kinases N terminal domain D0853_13895 PF13840 ACT domain D0853_13895 PF00742 Homoserine dehydrogenase D0853_13895 PF00696 Amino acid kinase family D0853_13895 PF03447 Homoserine dehydrogenase, NAD binding domain D0853_13895 PF01842 ACT domain D0853_13905 PF03737 Aldolase/RraA D0853_13920 PF00072 Response regulator receiver domain D0853_13920 PF00486 Transcriptional regulatory protein, C terminal D0853_13930 PF00072 Response regulator receiver domain D0853_13930 PF00989 PAS fold D0853_13930 PF00512 His Kinase A (phospho-acceptor) domain D0853_13930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_13930 PF01627 Hpt domain D0853_13930 PF18415 Histidine kinase receptor ArcB trans-membrane domain D0853_13935 PF00563 EAL domain D0853_13935 PF00990 Diguanylate cyclase, GGDEF domain D0853_13935 PF01590 GAF domain D0853_13935 PF00360 Phytochrome region D0853_13940 PF16199 Radical_SAM C-terminal domain D0853_13940 PF04055 Radical SAM superfamily D0853_13945 PF04898 Glutamate synthase central domain D0853_13945 PF01493 GXGXG motif D0853_13945 PF01645 Conserved region in glutamate synthase D0853_13945 PF00310 Glutamine amidotransferases class-II D0853_13950 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster D0853_13950 PF07992 Pyridine nucleotide-disulphide oxidoreductase D0853_13955 PF00310 Glutamine amidotransferases class-II D0853_13955 PF04898 Glutamate synthase central domain D0853_13955 PF01493 GXGXG motif D0853_13955 PF01645 Conserved region in glutamate synthase D0853_13960 PF07992 Pyridine nucleotide-disulphide oxidoreductase D0853_13960 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster D0853_13970 PF01048 Phosphorylase superfamily D0853_13975 PF03186 CobD/Cbib protein D0853_13975 PF17113 Regulatory signalling modulator protein AmpE D0853_13980 PF01497 Periplasmic binding protein D0853_13985 PF03458 UPF0126 domain D0853_13990 PF03466 LysR substrate binding domain D0853_13990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_13995 PF01925 Sulfite exporter TauE/SafE D0853_14010 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain D0853_14010 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D0853_14010 PF02142 MGS-like domain D0853_14015 PF00117 Glutamine amidotransferase class-I D0853_14015 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain D0853_14020 PF05173 Dihydrodipicolinate reductase, C-terminus D0853_14020 PF01113 Dihydrodipicolinate reductase, N-terminus D0853_14025 PF00293 NUDIX domain D0853_14030 PF07516 SecA Wing and Scaffold domain D0853_14030 PF07517 SecA DEAD-like domain D0853_14030 PF01043 SecA preprotein cross-linking domain D0853_14030 PF02810 SEC-C motif D0853_14040 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase D0853_14045 PF12327 FtsZ family, C-terminal domain D0853_14045 PF00091 Tubulin/FtsZ family, GTPase domain D0853_14050 PF02491 SHS2 domain inserted in FTSA D0853_14055 PF08478 POTRA domain, FtsQ-type D0853_14055 PF03799 Cell division protein FtsQ D0853_14060 PF08245 Mur ligase middle domain D0853_14060 PF02875 Mur ligase family, glutamate ligase domain D0853_14060 PF01225 Mur ligase family, catalytic domain D0853_14065 PF03033 Glycosyltransferase family 28 N-terminal domain D0853_14065 PF04101 Glycosyltransferase family 28 C-terminal domain D0853_14070 PF01098 Cell cycle protein D0853_14075 PF02875 Mur ligase family, glutamate ligase domain D0853_14075 PF08245 Mur ligase middle domain D0853_14080 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 D0853_14080 PF00953 Glycosyl transferase family 4 D0853_14085 PF08245 Mur ligase middle domain D0853_14085 PF01225 Mur ligase family, catalytic domain D0853_14085 PF02875 Mur ligase family, glutamate ligase domain D0853_14090 PF08245 Mur ligase middle domain D0853_14090 PF01225 Mur ligase family, catalytic domain D0853_14090 PF02875 Mur ligase family, glutamate ligase domain D0853_14095 PF03717 Penicillin-binding Protein dimerisation domain D0853_14095 PF00905 Penicillin binding protein transpeptidase domain D0853_14100 PF04999 Cell division protein FtsL D0853_14105 PF01795 MraW methylase family D0853_14120 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D0853_14125 PF04348 LppC putative lipoprotein D0853_14130 PF02021 Uncharacterised protein family UPF0102 D0853_14135 PF13580 SIS domain D0853_14140 PF04972 BON domain D0853_14145 PF04386 Stringent starvation protein B D0853_14150 PF00043 Glutathione S-transferase, C-terminal domain D0853_14150 PF02798 Glutathione S-transferase, N-terminal domain D0853_14155 PF02167 Cytochrome C1 family D0853_14160 PF00033 Cytochrome b/b6/petB D0853_14160 PF00032 Cytochrome b(C-terminal)/b6/petD D0853_14165 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal D0853_14165 PF00355 Rieske [2Fe-2S] domain D0853_14170 PF00380 Ribosomal protein S9/S16 D0853_14175 PF00572 Ribosomal protein L13 D0853_14185 PF03969 AFG1-like ATPase D0853_14195 PF06295 Protein of unknown function (DUF1043) D0853_14200 PF00595 PDZ domain D0853_14205 PF13180 PDZ domain D0853_14210 PF03989 DNA gyrase C-terminal domain, beta-propeller D0853_14210 PF00521 DNA gyrase/topoisomerase IV, subunit A D0853_14215 PF01751 Toprim domain D0853_14215 PF00204 DNA gyrase B D0853_14215 PF00986 DNA gyrase B subunit, carboxyl terminus D0853_14215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_14220 PF05728 Uncharacterised protein family (UPF0227) D0853_14225 PF00149 Calcineurin-like phosphoesterase D0853_14230 PF06853 Protein of unknown function (DUF1249) D0853_14235 PF00293 NUDIX domain D0853_14240 PF02321 Outer membrane efflux protein D0853_14245 PF01467 Cytidylyltransferase-like D0853_14245 PF00294 pfkB family carbohydrate kinase D0853_14250 PF03710 Glutamate-ammonia ligase adenylyltransferase D0853_14250 PF08335 GlnD PII-uridylyltransferase D0853_14255 PF00672 HAMP domain D0853_14255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D0853_14265 PF01928 CYTH domain D0853_14270 PF01865 Protein of unknown function DUF47 D0853_14275 PF01384 Phosphate transporter family D0853_14280 PF08239 Bacterial SH3 domain D0853_14290 PF01471 Putative peptidoglycan binding domain D0853_14290 PF13401 AAA domain D0853_14295 PF01743 Poly A polymerase head domain D0853_14295 PF12627 Probable RNA and SrmB- binding site of polymerase A D0853_14295 PF01966 HD domain D0853_14300 PF02673 Bacitracin resistance protein BacA D0853_14305 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) D0853_14310 PF02152 Dihydroneopterin aldolase D0853_14315 PF02660 Glycerol-3-phosphate acyltransferase D0853_14320 PF12697 Alpha/beta hydrolase family D0853_14325 PF00814 Glycoprotease family D0853_14330 PF01165 Ribosomal protein S21 D0853_14335 PF09424 Yqey-like protein D0853_14340 PF01807 CHC2 zinc finger D0853_14340 PF08275 DNA primase catalytic core, N-terminal domain D0853_14340 PF08278 DNA primase DnaG DnaB-binding D0853_14340 PF10410 DnaB-helicase binding domain of primase D0853_14345 PF03979 Sigma-70 factor, region 1.1 D0853_14345 PF04539 Sigma-70 region 3 D0853_14345 PF04545 Sigma-70, region 4 D0853_14345 PF04542 Sigma-70 region 2 D0853_14345 PF00140 Sigma-70 factor, region 1.2 D0853_14345 PF04546 Sigma-70, non-essential region D0853_14360 PF07804 HipA-like C-terminal domain D0853_14360 PF13657 HipA N-terminal domain D0853_14395 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) D0853_14395 PF00271 Helicase conserved C-terminal domain D0853_14395 PF08463 EcoEI R protein C-terminal D0853_14395 PF04851 Type III restriction enzyme, res subunit D0853_14400 PF01555 DNA methylase D0853_14435 PF12161 HsdM N-terminal domain D0853_14435 PF02384 N-6 DNA Methylase D0853_14440 PF01420 Type I restriction modification DNA specificity domain D0853_14485 PF03180 NLPA lipoprotein D0853_14495 PF12833 Helix-turn-helix domain D0853_14530 PF02378 Phosphotransferase system, EIIC D0853_14530 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D0853_14530 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D0853_14535 PF08125 Mannitol dehydrogenase C-terminal domain D0853_14535 PF01232 Mannitol dehydrogenase Rossmann domain D0853_14540 PF05068 Mannitol repressor D0853_14545 PF02954 Bacterial regulatory protein, Fis family D0853_14545 PF00989 PAS fold D0853_14545 PF00158 Sigma-54 interaction domain D0853_14550 PF02896 PEP-utilising enzyme, TIM barrel domain D0853_14550 PF05524 PEP-utilising enzyme, N-terminal D0853_14550 PF00391 PEP-utilising enzyme, mobile domain D0853_14555 PF02734 DAK2 domain D0853_14560 PF02733 Dak1 domain D0853_14565 PF00465 Iron-containing alcohol dehydrogenase D0853_14570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_14570 PF00672 HAMP domain D0853_14570 PF00512 His Kinase A (phospho-acceptor) domain D0853_14575 PF00072 Response regulator receiver domain D0853_14575 PF00486 Transcriptional regulatory protein, C terminal D0853_14585 PF01380 SIS domain D0853_14590 PF08220 DeoR-like helix-turn-helix domain D0853_14590 PF00455 DeoR C terminal sensor domain D0853_14600 PF02887 Pyruvate kinase, alpha/beta domain D0853_14600 PF00224 Pyruvate kinase, barrel domain D0853_14610 PF07694 5TMR of 5TMR-LYT D0853_14610 PF00990 Diguanylate cyclase, GGDEF domain D0853_14615 PF10369 Small subunit of acetolactate synthase D0853_14620 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D0853_14620 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D0853_14620 PF00205 Thiamine pyrophosphate enzyme, central domain D0853_14625 PF00501 AMP-binding enzyme D0853_14630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_14630 PF03466 LysR substrate binding domain D0853_14650 PF08502 LeuA allosteric (dimerisation) domain D0853_14650 PF00682 HMGL-like D0853_14655 PF00180 Isocitrate/isopropylmalate dehydrogenase D0853_14660 PF00330 Aconitase family (aconitate hydratase) D0853_14665 PF00694 Aconitase C-terminal domain D0853_14675 PF00226 DnaJ domain D0853_14675 PF05099 Tellurite resistance protein TerB D0853_14680 PF04453 LPS transport system D D0853_14680 PF03968 OstA-like protein D0853_14685 PF09312 SurA N-terminal domain D0853_14690 PF04166 Pyridoxal phosphate biosynthetic protein PdxA D0853_14695 PF00398 Ribosomal RNA adenine dimethylase D0853_14700 PF04379 ApaG domain D0853_14705 PF00149 Calcineurin-like phosphoesterase D0853_14710 PF00186 Dihydrofolate reductase D0853_14715 PF12821 Threonine/Serine exporter, ThrE D0853_14720 PF06738 Putative threonine/serine exporter D0853_14725 PF01926 50S ribosome-binding GTPase D0853_14725 PF01018 GTP1/OBG D0853_14730 PF01016 Ribosomal L27 protein D0853_14735 PF00829 Ribosomal prokaryotic L21 protein D0853_14740 PF00348 Polyprenyl synthetase D0853_14750 PF00056 lactate/malate dehydrogenase, NAD binding domain D0853_14750 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain D0853_14755 PF02863 Arginine repressor, C-terminal domain D0853_14755 PF01316 Arginine repressor, DNA binding domain D0853_14765 PF16868 NMT1-like family D0853_14785 PF00005 ABC transporter D0853_14790 PF00528 Binding-protein-dependent transport system inner membrane component D0853_14800 PF02441 Flavoprotein D0853_14805 PF01225 Mur ligase family, catalytic domain D0853_14805 PF08245 Mur ligase middle domain D0853_14805 PF02875 Mur ligase family, glutamate ligase domain D0853_14815 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain D0853_14820 PF00719 Inorganic pyrophosphatase D0853_14830 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like D0853_14835 PF04357 TamB, inner membrane protein subunit of TAM complex D0853_14840 PF17243 POTRA domain TamA domain 1 D0853_14840 PF01103 Surface antigen D0853_14845 PF01625 Peptide methionine sulfoxide reductase D0853_14850 PF06526 Protein of unknown function (DUF1107) D0853_14855 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) D0853_14860 PF10795 Protein of unknown function (DUF2607) D0853_14870 PF00005 ABC transporter D0853_14895 PF02080 TrkA-C domain D0853_14895 PF03600 Citrate transporter D0853_14905 PF00009 Elongation factor Tu GTP binding domain D0853_14910 PF01507 Phosphoadenosine phosphosulfate reductase family D0853_14915 PF14824 Sirohaem biosynthesis protein central D0853_14915 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D0853_14915 PF10414 Sirohaem synthase dimerisation region D0853_14920 PF00149 Calcineurin-like phosphoesterase D0853_14920 PF02872 5'-nucleotidase, C-terminal domain D0853_14930 PF03880 DbpA RNA binding domain D0853_14930 PF00270 DEAD/DEAH box helicase D0853_14930 PF00271 Helicase conserved C-terminal domain D0853_14935 PF13673 Acetyltransferase (GNAT) domain D0853_14945 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D0853_14945 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase D0853_14955 PF01196 Ribosomal protein L17 D0853_14960 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain D0853_14960 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain D0853_14960 PF01000 RNA polymerase Rpb3/RpoA insert domain D0853_14965 PF01479 S4 domain D0853_14965 PF00163 Ribosomal protein S4/S9 N-terminal domain D0853_14970 PF00411 Ribosomal protein S11 D0853_14975 PF00416 Ribosomal protein S13/S18 D0853_14980 PF00444 Ribosomal protein L36 D0853_14985 PF00344 SecY translocase D0853_14990 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A D0853_14995 PF00327 Ribosomal protein L30p/L7e D0853_15000 PF03719 Ribosomal protein S5, C-terminal domain D0853_15000 PF00333 Ribosomal protein S5, N-terminal domain D0853_15005 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast D0853_15010 PF00347 Ribosomal protein L6 D0853_15015 PF00410 Ribosomal protein S8 D0853_15020 PF00253 Ribosomal protein S14p/S29e D0853_15025 PF00281 Ribosomal protein L5 D0853_15025 PF00673 ribosomal L5P family C-terminus D0853_15030 PF00467 KOW motif D0853_15030 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 D0853_15035 PF00238 Ribosomal protein L14p/L23e D0853_15040 PF00366 Ribosomal protein S17 D0853_15045 PF00831 Ribosomal L29 protein D0853_15050 PF00252 Ribosomal protein L16p/L10e D0853_15055 PF07650 KH domain D0853_15055 PF00189 Ribosomal protein S3, C-terminal domain D0853_15060 PF00237 Ribosomal protein L22p/L17e D0853_15065 PF00203 Ribosomal protein S19 D0853_15070 PF00181 Ribosomal Proteins L2, RNA binding domain D0853_15070 PF03947 Ribosomal Proteins L2, C-terminal domain D0853_15075 PF00276 Ribosomal protein L23 D0853_15080 PF00573 Ribosomal protein L4/L1 family D0853_15085 PF00297 Ribosomal protein L3 D0853_15090 PF00338 Ribosomal protein S10p/S20e D0853_15095 PF01197 Ribosomal protein L31 D0853_15105 PF18074 Primosomal protein N C-terminal domain D0853_15105 PF00270 DEAD/DEAH box helicase D0853_15105 PF18319 PriA DNA helicase Cys-rich region (CRR) domain D0853_15105 PF17764 3′ DNA-binding domain (3′BD) D0853_15105 PF00271 Helicase conserved C-terminal domain D0853_15110 PF00356 Bacterial regulatory proteins, lacI family D0853_15120 PF00227 Proteasome subunit D0853_15125 PF07724 AAA domain (Cdc48 subfamily) D0853_15125 PF00004 ATPase family associated with various cellular activities (AAA) D0853_15130 PF01040 UbiA prenyltransferase family D0853_15135 PF03737 Aldolase/RraA D0853_15140 PF06005 Cell division protein ZapB D0853_15150 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded D0853_15155 PF00455 DeoR C terminal sensor domain D0853_15155 PF08220 DeoR-like helix-turn-helix domain D0853_15175 PF00121 Triosephosphate isomerase D0853_15180 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain D0853_15180 PF00753 Metallo-beta-lactamase superfamily D0853_15180 PF10996 Beta-Casp domain D0853_15185 PF00483 Nucleotidyl transferase D0853_15190 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain D0853_15190 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain D0853_15190 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain D0853_15195 PF02719 Polysaccharide biosynthesis protein D0853_15200 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family D0853_15215 PF02397 Bacterial sugar transferase D0853_15225 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase D0853_15255 PF00483 Nucleotidyl transferase D0853_15260 PF16363 GDP-mannose 4,6 dehydratase D0853_15295 PF06082 Exopolysaccharide biosynthesis protein YbjH D0853_15300 PF01370 NAD dependent epimerase/dehydratase family D0853_15305 PF03279 Bacterial lipid A biosynthesis acyltransferase D0853_15310 PF01075 Glycosyltransferase family 9 (heptosyltransferase) D0853_15315 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) D0853_15340 PF00795 Carbon-nitrogen hydrolase D0853_15345 PF00202 Aminotransferase class-III D0853_15355 PF13472 GDSL-like Lipase/Acylhydrolase family D0853_15355 PF02348 Cytidylyltransferase D0853_15360 PF00483 Nucleotidyl transferase D0853_15370 PF03102 NeuB family D0853_15370 PF08666 SAF domain D0853_15375 PF02350 UDP-N-acetylglucosamine 2-epimerase D0853_15380 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family D0853_15385 PF02719 Polysaccharide biosynthesis protein D0853_15395 PF01219 Prokaryotic diacylglycerol kinase D0853_15400 PF01075 Glycosyltransferase family 9 (heptosyltransferase) D0853_15405 PF00535 Glycosyl transferase family 2 D0853_15410 PF00535 Glycosyl transferase family 2 D0853_15415 PF05686 Glycosyl transferase family 90 D0853_15420 PF01467 Cytidylyltransferase-like D0853_15425 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain D0853_15425 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain D0853_15425 PF06827 Zinc finger found in FPG and IleRS D0853_15435 PF00884 Sulfatase D0853_15440 PF00471 Ribosomal protein L33 D0853_15445 PF00830 Ribosomal L28 family D0853_15450 PF04002 RadC-like JAB domain D0853_15455 PF17200 Single Cache domain 2 D0853_15455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D0853_15455 PF00672 HAMP domain D0853_15465 PF04127 DNA / pantothenate metabolism flavoprotein D0853_15465 PF02441 Flavoprotein D0853_15470 PF00440 Bacterial regulatory proteins, tetR family D0853_15475 PF03279 Bacterial lipid A biosynthesis acyltransferase D0853_15480 PF00156 Phosphoribosyl transferase domain D0853_15485 PF03725 3' exoribonuclease family, domain 2 D0853_15485 PF01138 3' exoribonuclease family, domain 1 D0853_15495 PF03755 YicC-like family, N-terminal region D0853_15495 PF08340 Domain of unknown function (DUF1732) D0853_15505 PF00005 ABC transporter D0853_15505 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D0853_15510 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D0853_15510 PF00005 ABC transporter D0853_15515 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D0853_15520 PF12911 N-terminal TM domain of oligopeptide transport permease C D0853_15520 PF00528 Binding-protein-dependent transport system inner membrane component D0853_15525 PF00528 Binding-protein-dependent transport system inner membrane component D0853_15535 PF07715 TonB-dependent Receptor Plug Domain D0853_15535 PF00593 TonB dependent receptor D0853_15550 PF01618 MotA/TolQ/ExbB proton channel family D0853_15555 PF02472 Biopolymer transport protein ExbD/TolR D0853_15570 PF00625 Guanylate kinase D0853_15575 PF01192 RNA polymerase Rpb6 D0853_15580 PF02824 TGS domain D0853_15580 PF13291 ACT domain D0853_15580 PF04607 Region found in RelA / SpoT proteins D0853_15585 PF12105 SpoU, rRNA methylase, C-terminal D0853_15585 PF00588 SpoU rRNA Methylase family D0853_15590 PF00270 DEAD/DEAH box helicase D0853_15590 PF00271 Helicase conserved C-terminal domain D0853_15590 PF17191 RecG wedge domain D0853_15600 PF00860 Permease family D0853_15605 PF00672 HAMP domain D0853_15605 PF00512 His Kinase A (phospho-acceptor) domain D0853_15605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_15610 PF00072 Response regulator receiver domain D0853_15610 PF00486 Transcriptional regulatory protein, C terminal D0853_15620 PF01272 Transcription elongation factor, GreA/GreB, C-term D0853_15620 PF03449 Transcription elongation factor, N-terminal D0853_15630 PF16921 Tex protein YqgF-like domain D0853_15630 PF09371 Tex-like protein N-terminal domain D0853_15630 PF00575 S1 RNA binding domain D0853_15630 PF17674 HHH domain D0853_15640 PF00561 alpha/beta hydrolase fold D0853_15645 PF00156 Phosphoribosyl transferase domain D0853_15650 PF01106 NifU-like domain D0853_15650 PF01521 Iron-sulphur cluster biosynthesis D0853_15655 PF00293 NUDIX domain D0853_15660 PF00459 Inositol monophosphatase family D0853_15665 PF01203 Type II secretion system (T2SS), protein N D0853_15670 PF04612 Type II secretion system (T2SS), protein M D0853_15675 PF05134 Type II secretion system (T2SS), protein L D0853_15675 PF12693 GspL periplasmic domain D0853_15680 PF03934 Type II secretion system (T2SS), protein K D0853_15685 PF07963 Prokaryotic N-terminal methylation motif D0853_15685 PF11612 Type II secretion system (T2SS), protein J D0853_15690 PF07963 Prokaryotic N-terminal methylation motif D0853_15690 PF02501 Type II secretion system (T2SS), protein I D0853_15695 PF12019 Type II transport protein GspH D0853_15700 PF08334 Type II secretion system (T2SS), protein G D0853_15700 PF07963 Prokaryotic N-terminal methylation motif D0853_15705 PF00482 Type II secretion system (T2SS), protein F D0853_15710 PF00437 Type II/IV secretion system protein D0853_15715 PF00263 Bacterial type II and III secretion system protein D0853_15715 PF03958 Bacterial type II/III secretion system short domain D0853_15720 PF11356 Type II secretion system protein C D0853_15725 PF01479 S4 domain D0853_15730 PF01430 Hsp33 protein D0853_15735 PF01293 Phosphoenolpyruvate carboxykinase D0853_15745 PF09500 Putative thioesterase (yiiD_Cterm) D0853_15745 PF00583 Acetyltransferase (GNAT) family D0853_15750 PF02580 D-Tyr-tRNA(Tyr) deacylase D0853_15755 PF03631 Virulence factor BrkB D0853_15780 PF00120 Glutamine synthetase, catalytic domain D0853_15780 PF03951 Glutamine synthetase, beta-Grasp domain D0853_15790 PF00512 His Kinase A (phospho-acceptor) domain D0853_15790 PF00989 PAS fold D0853_15790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_15795 PF02954 Bacterial regulatory protein, Fis family D0853_15795 PF00158 Sigma-54 interaction domain D0853_15795 PF00072 Response regulator receiver domain D0853_15800 PF00990 Diguanylate cyclase, GGDEF domain D0853_15800 PF03707 Bacterial signalling protein N terminal repeat D0853_15800 PF00563 EAL domain D0853_15805 PF00962 Adenosine/AMP deaminase D0853_15810 PF06969 HemN C-terminal domain D0853_15810 PF04055 Radical SAM superfamily D0853_15815 PF10675 Protein of unknown function (DUF2489) D0853_15820 PF04220 Der GTPase activator (YihI) D0853_15835 PF00034 Cytochrome c D0853_15840 PF01926 50S ribosome-binding GTPase D0853_15850 PF00476 DNA polymerase family A D0853_15850 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain D0853_15850 PF01367 5'-3' exonuclease, C-terminal SAM fold D0853_15850 PF01612 3'-5' exonuclease D0853_15865 PF00490 Delta-aminolevulinic acid dehydratase D0853_15875 PF01026 TatD related DNase D0853_15885 PF00902 Sec-independent protein translocase protein (TatC) D0853_15890 PF02416 mttA/Hcf106 family D0853_15895 PF02416 mttA/Hcf106 family D0853_15900 PF03109 ABC1 family D0853_15905 PF02036 SCP-2 sterol transfer family D0853_15910 PF01209 ubiE/COQ5 methyltransferase family D0853_15915 PF02646 RmuC family D0853_15925 PF00563 EAL domain D0853_15925 PF00990 Diguanylate cyclase, GGDEF domain D0853_15925 PF03707 Bacterial signalling protein N terminal repeat D0853_15930 PF01594 AI-2E family transporter D0853_15960 PF00781 Diacylglycerol kinase catalytic domain D0853_15985 PF02954 Bacterial regulatory protein, Fis family D0853_15985 PF01590 GAF domain D0853_15985 PF00158 Sigma-54 interaction domain D0853_15995 PF10625 Universal stress protein B (UspB) D0853_16000 PF00210 Ferritin-like domain D0853_16005 PF00582 Universal stress protein family D0853_16010 PF00892 EamA-like transporter family D0853_16020 PF04445 Putative SAM-dependent methyltransferase D0853_16025 PF08448 PAS fold D0853_16025 PF00990 Diguanylate cyclase, GGDEF domain D0853_16025 PF00563 EAL domain D0853_16030 PF01037 Lrp/AsnC ligand binding domain D0853_16035 PF01432 Peptidase family M3 D0853_16045 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ D0853_16050 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D0853_16050 PF07992 Pyridine nucleotide-disulphide oxidoreductase D0853_16055 PF03466 LysR substrate binding domain D0853_16055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_16060 PF01048 Phosphorylase superfamily D0853_16065 PF01081 KDPG and KHG aldolase D0853_16070 PF02447 GntP family permease D0853_16075 PF01202 Shikimate kinase D0853_16080 PF00920 Dehydratase family D0853_16085 PF00893 Small Multidrug Resistance protein D0853_16090 PF00893 Small Multidrug Resistance protein D0853_16095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_16095 PF03466 LysR substrate binding domain D0853_16100 PF00356 Bacterial regulatory proteins, lacI family D0853_16100 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family D0853_16105 PF00069 Protein kinase domain D0853_16140 PF12911 N-terminal TM domain of oligopeptide transport permease C D0853_16140 PF00528 Binding-protein-dependent transport system inner membrane component D0853_16150 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D0853_16155 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D0853_16155 PF00005 ABC transporter D0853_16170 PF13419 Haloacid dehalogenase-like hydrolase D0853_16205 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D0853_16210 PF00580 UvrD/REP helicase N-terminal domain D0853_16210 PF13361 UvrD-like helicase C-terminal domain D0853_16215 PF00440 Bacterial regulatory proteins, tetR family D0853_16215 PF16295 Tetracyclin repressor-like, C-terminal domain D0853_16220 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D0853_16225 PF00873 AcrB/AcrD/AcrF family D0853_16235 PF04380 Membrane fusogenic activity D0853_16240 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain D0853_16240 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain D0853_16245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_16245 PF03466 LysR substrate binding domain D0853_16290 PF00132 Bacterial transferase hexapeptide (six repeats) D0853_16295 PF07369 Protein of unknown function (DUF1488) D0853_16300 PF18317 Shikimate 5'-dehydrogenase C-terminal domain D0853_16300 PF01488 Shikimate / quinate 5-dehydrogenase D0853_16300 PF08501 Shikimate dehydrogenase substrate binding domain D0853_16305 PF01218 Coproporphyrinogen III oxidase D0853_16310 PF01300 Telomere recombination D0853_16315 PF00731 AIR carboxylase D0853_16320 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain D0853_16320 PF02222 ATP-grasp domain D0853_16325 PF01396 Topoisomerase DNA binding C4 zinc finger D0853_16330 PF04361 Protein of unknown function (DUF494) D0853_16335 PF17782 DprA winged helix domain D0853_16335 PF02481 DNA recombination-mediator protein A D0853_16345 PF01327 Polypeptide deformylase D0853_16350 PF00551 Formyl transferase D0853_16350 PF02911 Formyl transferase, C-terminal domain D0853_16355 PF01189 16S rRNA methyltransferase RsmB/F D0853_16355 PF01029 NusB family D0853_16360 PF02080 TrkA-C domain D0853_16360 PF02254 TrkA-N domain D0853_16365 PF02386 Cation transport protein D0853_16375 PF03006 Haemolysin-III related D0853_16380 PF07070 SpoOM protein D0853_16390 PF06288 Protein of unknown function (DUF1040) D0853_16395 PF13746 4Fe-4S dicluster domain D0853_16395 PF12801 4Fe-4S binding domain D0853_16395 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase D0853_16400 PF01636 Phosphotransferase enzyme family D0853_16405 PF01323 DSBA-like thioredoxin domain D0853_16410 PF01553 Acyltransferase D0853_16420 PF13335 Magnesium chelatase, subunit ChlI C-terminal D0853_16420 PF01078 Magnesium chelatase, subunit ChlI D0853_16425 PF00205 Thiamine pyrophosphate enzyme, central domain D0853_16425 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D0853_16425 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D0853_16435 PF01063 Amino-transferase class IV D0853_16440 PF00920 Dehydratase family D0853_16445 PF00585 C-terminal regulatory domain of Threonine dehydratase D0853_16445 PF00291 Pyridoxal-phosphate dependent enzyme D0853_16450 PF03466 LysR substrate binding domain D0853_16450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_16455 PF07690 Major Facilitator Superfamily D0853_16460 PF00497 Bacterial extracellular solute-binding proteins, family 3 D0853_16465 PF00528 Binding-protein-dependent transport system inner membrane component D0853_16470 PF12804 MobA-like NTP transferase domain D0853_16470 PF00132 Bacterial transferase hexapeptide (six repeats) D0853_16475 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain D0853_16475 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain D0853_16480 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D0853_16480 PF02874 ATP synthase alpha/beta family, beta-barrel domain D0853_16485 PF00231 ATP synthase D0853_16490 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D0853_16490 PF02874 ATP synthase alpha/beta family, beta-barrel domain D0853_16490 PF00306 ATP synthase alpha/beta chain, C terminal domain D0853_16495 PF00213 ATP synthase delta (OSCP) subunit D0853_16500 PF00430 ATP synthase B/B' CF(0) D0853_16505 PF00137 ATP synthase subunit C D0853_16510 PF00119 ATP synthase A chain D0853_16515 PF03899 ATP synthase I chain D0853_16520 PF17762 HTH domain found in ParB protein D0853_16520 PF02195 ParB-like nuclease domain D0853_16525 PF13614 AAA domain D0853_16530 PF02527 rRNA small subunit methyltransferase G D0853_16535 PF13932 GidA associated domain D0853_16535 PF01134 Glucose inhibited division protein A D0853_16540 PF00258 Flavodoxin D0853_16545 PF12631 MnmE helical domain D0853_16545 PF01926 50S ribosome-binding GTPase D0853_16545 PF10396 GTP-binding protein TrmE N-terminus D0853_16550 PF02096 60Kd inner membrane protein D0853_16550 PF14849 YidC periplasmic domain D0853_16555 PF01809 Putative membrane protein insertion efficiency factor D0853_16560 PF00825 Ribonuclease P D0853_16565 PF00468 Ribosomal protein L34 D0853_16570 PF00005 ABC transporter D0853_16575 PF00528 Binding-protein-dependent transport system inner membrane component D0853_16580 PF00497 Bacterial extracellular solute-binding proteins, family 3 D0853_16605 PF00857 Isochorismatase family D0853_16615 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family D0853_16615 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain D0853_16645 PF03466 LysR substrate binding domain D0853_16645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_16650 PF01389 OmpA-like transmembrane domain D0853_16650 PF00691 OmpA family D0853_16660 PF06629 MltA-interacting protein MipA D0853_16670 PF17185 NlpE C-terminal OB domain D0853_16670 PF04170 NlpE N-terminal domain D0853_16680 PF02001 Protein of unknown function DUF134 D0853_16705 PF14492 Elongation Factor G, domain II D0853_16705 PF03764 Elongation factor G, domain IV D0853_16705 PF00679 Elongation factor G C-terminus D0853_16705 PF00009 Elongation factor Tu GTP binding domain D0853_16705 PF03144 Elongation factor Tu domain 2 D0853_16715 PF13378 Enolase C-terminal domain-like D0853_16715 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain D0853_16725 PF03466 LysR substrate binding domain D0853_16725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_16745 PF00376 MerR family regulatory protein D0853_16745 PF09278 MerR, DNA binding D0853_16775 PF13091 PLD-like domain D0853_16785 PF13533 Biotin-lipoyl like D0853_16790 PF00873 AcrB/AcrD/AcrF family D0853_16820 PF08402 TOBE domain D0853_16820 PF00005 ABC transporter D0853_16845 PF07702 UTRA domain D0853_16845 PF00392 Bacterial regulatory proteins, gntR family D0853_16850 PF02028 BCCT, betaine/carnitine/choline family transporter D0853_16855 PF02837 Glycosyl hydrolases family 2, sugar binding domain D0853_16855 PF02836 Glycosyl hydrolases family 2, TIM barrel domain D0853_16855 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 D0853_16855 PF00703 Glycosyl hydrolases family 2 D0853_16860 PF00196 Bacterial regulatory proteins, luxR family D0853_16870 PF00990 Diguanylate cyclase, GGDEF domain D0853_16870 PF07694 5TMR of 5TMR-LYT D0853_16885 PF00873 AcrB/AcrD/AcrF family D0853_16890 PF13533 Biotin-lipoyl like D0853_16895 PF03466 LysR substrate binding domain D0853_16895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_16905 PF13416 Bacterial extracellular solute-binding protein D0853_16910 PF00579 tRNA synthetases class I (W and Y) D0853_16930 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain D0853_16930 PF00391 PEP-utilising enzyme, mobile domain D0853_16930 PF02896 PEP-utilising enzyme, TIM barrel domain D0853_16935 PF03618 Kinase/pyrophosphorylase D0853_16940 PF00710 Asparaginase, N-terminal D0853_16940 PF17763 Glutaminase/Asparaginase C-terminal domain D0853_16950 PF03466 LysR substrate binding domain D0853_16950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_16965 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) D0853_16975 PF12833 Helix-turn-helix domain D0853_16975 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term D0853_16990 PF08240 Alcohol dehydrogenase GroES-like domain D0853_16990 PF00107 Zinc-binding dehydrogenase D0853_16995 PF00724 NADH:flavin oxidoreductase / NADH oxidase family D0853_17005 PF03466 LysR substrate binding domain D0853_17005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_17010 PF03466 LysR substrate binding domain D0853_17010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_17020 PF00271 Helicase conserved C-terminal domain D0853_17020 PF00270 DEAD/DEAH box helicase D0853_17035 PF00535 Glycosyl transferase family 2 D0853_17065 PF00155 Aminotransferase class I and II D0853_17070 PF01497 Periplasmic binding protein D0853_17070 PF12833 Helix-turn-helix domain D0853_17100 PF05661 Protein of unknown function (DUF808) D0853_17105 PF01979 Amidohydrolase family D0853_17115 PF01679 Proteolipid membrane potential modulator D0853_17125 PF03476 MOSC N-terminal beta barrel domain D0853_17125 PF00111 2Fe-2S iron-sulfur cluster binding domain D0853_17125 PF03473 MOSC domain D0853_17125 PF00111 2Fe-2S iron-sulfur cluster binding domain D0853_17125 PF03476 MOSC N-terminal beta barrel domain D0853_17125 PF03473 MOSC domain D0853_17130 PF02540 NAD synthase D0853_17135 PF01467 Cytidylyltransferase-like D0853_17180 PF00005 ABC transporter D0853_17185 PF01032 FecCD transport family D0853_17195 PF02472 Biopolymer transport protein ExbD/TolR D0853_17200 PF01618 MotA/TolQ/ExbB proton channel family D0853_17205 PF03544 Gram-negative bacterial TonB protein C-terminal D0853_17210 PF04055 Radical SAM superfamily D0853_17215 PF06228 Haem utilisation ChuX/HutX D0853_17220 PF01243 Pyridoxamine 5'-phosphate oxidase D0853_17230 PF00072 Response regulator receiver domain D0853_17230 PF01584 CheW-like domain D0853_17245 PF00239 Resolvase, N terminal domain D0853_17245 PF13408 Recombinase zinc beta ribbon domain D0853_17245 PF07508 Recombinase D0853_17255 PF00239 Resolvase, N terminal domain D0853_17255 PF02796 Helix-turn-helix domain of resolvase D0853_17275 PF00075 RNase H D0853_17330 PF00082 Subtilase family D0853_17350 PF00141 Peroxidase D0853_17355 PF00210 Ferritin-like domain D0853_17365 PF03466 LysR substrate binding domain D0853_17365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_17380 PF04151 Bacterial pre-peptidase C-terminal domain D0853_17380 PF01752 Collagenase D0853_17380 PF08453 Peptidase family M9 N-terminal D0853_17390 PF00128 Alpha amylase, catalytic domain D0853_17405 PF02254 TrkA-N domain D0853_17405 PF00999 Sodium/hydrogen exchanger family D0853_17410 PF02525 Flavodoxin-like fold D0853_17415 PF00582 Universal stress protein family D0853_17420 PF16326 ABC transporter C-terminal domain D0853_17420 PF12848 ABC transporter D0853_17420 PF00005 ABC transporter D0853_17425 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain D0853_17425 PF00326 Prolyl oligopeptidase family D0853_17435 PF13533 Biotin-lipoyl like D0853_17440 PF00873 AcrB/AcrD/AcrF family D0853_17445 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) D0853_17455 PF13302 Acetyltransferase (GNAT) domain D0853_17465 PF13185 GAF domain D0853_17465 PF00990 Diguanylate cyclase, GGDEF domain D0853_17485 PF00873 AcrB/AcrD/AcrF family D0853_17510 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D0853_17510 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region D0853_17510 PF00384 Molybdopterin oxidoreductase D0853_17510 PF01568 Molydopterin dinucleotide binding domain D0853_17510 PF12838 4Fe-4S dicluster domain D0853_17530 PF00005 ABC transporter D0853_17540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D0853_17540 PF00672 HAMP domain D0853_17550 PF10282 Lactonase, 7-bladed beta-propeller D0853_17555 PF02567 Phenazine biosynthesis-like protein D0853_17560 PF01161 Phosphatidylethanolamine-binding protein D0853_17570 PF01758 Sodium Bile acid symporter family D0853_17590 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D0853_17595 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D0853_17595 PF02378 Phosphotransferase system, EIIC D0853_17600 PF00107 Zinc-binding dehydrogenase D0853_17600 PF08240 Alcohol dehydrogenase GroES-like domain D0853_17635 PF03222 Tryptophan/tyrosine permease family D0853_17645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D0853_17645 PF02743 Cache domain D0853_17645 PF00672 HAMP domain D0853_17675 PF08525 Opacity-associated protein A N-terminal motif D0853_17675 PF01476 LysM domain D0853_17675 PF01551 Peptidase family M23 D0853_17680 PF00990 Diguanylate cyclase, GGDEF domain D0853_17680 PF08447 PAS fold D0853_17680 PF00563 EAL domain D0853_17680 PF08448 PAS fold D0853_17685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_17685 PF03466 LysR substrate binding domain D0853_17690 PF07690 Major Facilitator Superfamily D0853_17715 PF00892 EamA-like transporter family D0853_17730 PF01557 Fumarylacetoacetate (FAA) hydrolase family D0853_17745 PF12833 Helix-turn-helix domain D0853_17750 PF01810 LysE type translocator D0853_17760 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D0853_17760 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D0853_17760 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D0853_17760 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D0853_17765 PF02790 Cytochrome C oxidase subunit II, transmembrane domain D0853_17765 PF00116 Cytochrome C oxidase subunit II, periplasmic domain D0853_17770 PF00115 Cytochrome C and Quinol oxidase polypeptide I D0853_17775 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 D0853_17780 PF00510 Cytochrome c oxidase subunit III D0853_17800 PF02628 Cytochrome oxidase assembly protein D0853_17805 PF01040 UbiA prenyltransferase family D0853_17810 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D0853_17810 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase D0853_17845 PF00313 'Cold-shock' DNA-binding domain D0853_17850 PF03889 Alternative ribosome-rescue factor A D0853_17855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D0853_17855 PF08447 PAS fold D0853_17855 PF13426 PAS domain D0853_17865 PF00990 Diguanylate cyclase, GGDEF domain D0853_17880 PF00005 ABC transporter D0853_17880 PF02687 FtsX-like permease family D0853_17880 PF12704 MacB-like periplasmic core domain D0853_17885 PF00005 ABC transporter D0853_17885 PF02687 FtsX-like permease family D0853_17885 PF12704 MacB-like periplasmic core domain D0853_17895 PF17200 Single Cache domain 2 D0853_17895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D0853_17895 PF00672 HAMP domain D0853_17905 PF00210 Ferritin-like domain D0853_17915 PF07995 Glucose / Sorbosone dehydrogenase D0853_17920 PF00465 Iron-containing alcohol dehydrogenase D0853_17935 PF00892 EamA-like transporter family D0853_17960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_17960 PF03466 LysR substrate binding domain D0853_17970 PF00501 AMP-binding enzyme D0853_17970 PF13193 AMP-binding enzyme C-terminal domain D0853_17975 PF00351 Biopterin-dependent aromatic amino acid hydroxylase D0853_17980 PF01329 Pterin 4 alpha carbinolamine dehydratase D0853_18005 PF12843 Putative quorum-sensing-regulated virulence factor D0853_18010 PF00271 Helicase conserved C-terminal domain D0853_18010 PF00270 DEAD/DEAH box helicase D0853_18015 PF09905 DNA-binding protein VF530 D0853_18020 PF00291 Pyridoxal-phosphate dependent enzyme D0853_18030 PF01470 Pyroglutamyl peptidase D0853_18040 PF07683 Cobalamin synthesis protein cobW C-terminal domain D0853_18040 PF02492 CobW/HypB/UreG, nucleotide-binding domain D0853_18045 PF00271 Helicase conserved C-terminal domain D0853_18045 PF00270 DEAD/DEAH box helicase D0853_18065 PF00563 EAL domain D0853_18065 PF12792 CSS motif domain associated with EAL D0853_18070 PF00005 ABC transporter D0853_18075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D0853_18075 PF00672 HAMP domain D0853_18075 PF12729 Four helix bundle sensory module for signal transduction D0853_18090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_18090 PF03466 LysR substrate binding domain D0853_18095 PF00884 Sulfatase D0853_18100 PF13186 Iron-sulfur cluster-binding domain D0853_18100 PF04055 Radical SAM superfamily D0853_18105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_18105 PF03466 LysR substrate binding domain D0853_18120 PF12849 PBP superfamily domain D0853_18130 PF12833 Helix-turn-helix domain D0853_18135 PF00575 S1 RNA binding domain D0853_18135 PF00773 RNB domain D0853_18135 PF08206 Ribonuclease B OB domain D0853_18140 PF03880 DbpA RNA binding domain D0853_18140 PF00270 DEAD/DEAH box helicase D0853_18140 PF00271 Helicase conserved C-terminal domain D0853_18145 PF00563 EAL domain D0853_18145 PF00990 Diguanylate cyclase, GGDEF domain D0853_18145 PF13426 PAS domain D0853_18155 PF00871 Acetokinase family D0853_18160 PF13426 PAS domain D0853_18160 PF08447 PAS fold D0853_18160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D0853_18170 PF10063 Uncharacterized integral membrane protein (DUF2301) D0853_18175 PF00682 HMGL-like D0853_18180 PF00378 Enoyl-CoA hydratase/isomerase D0853_18185 PF01039 Carboxyl transferase domain D0853_18190 PF02770 Acyl-CoA dehydrogenase, middle domain D0853_18190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D0853_18190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D0853_18195 PF09278 MerR, DNA binding D0853_18195 PF00376 MerR family regulatory protein D0853_18200 PF02803 Thiolase, C-terminal domain D0853_18200 PF00108 Thiolase, N-terminal domain D0853_18205 PF00171 Aldehyde dehydrogenase family D0853_18215 PF00378 Enoyl-CoA hydratase/isomerase D0853_18220 PF00378 Enoyl-CoA hydratase/isomerase D0853_18225 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D0853_18225 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D0853_18235 PF00116 Cytochrome C oxidase subunit II, periplasmic domain D0853_18235 PF06481 COX Aromatic Rich Motif D0853_18240 PF00115 Cytochrome C and Quinol oxidase polypeptide I D0853_18245 PF00510 Cytochrome c oxidase subunit III D0853_18255 PF01040 UbiA prenyltransferase family D0853_18270 PF00724 NADH:flavin oxidoreductase / NADH oxidase family D0853_18275 PF01565 FAD binding domain D0853_18275 PF08031 Berberine and berberine like D0853_18280 PF00005 ABC transporter D0853_18285 PF00497 Bacterial extracellular solute-binding proteins, family 3 D0853_18290 PF00528 Binding-protein-dependent transport system inner membrane component D0853_18295 PF00528 Binding-protein-dependent transport system inner membrane component D0853_18305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_18305 PF03466 LysR substrate binding domain D0853_18310 PF00043 Glutathione S-transferase, C-terminal domain D0853_18310 PF02798 Glutathione S-transferase, N-terminal domain D0853_18325 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D0853_18325 PF00364 Biotin-requiring enzyme D0853_18325 PF02817 e3 binding domain D0853_18330 PF02780 Transketolase, C-terminal domain D0853_18330 PF02779 Transketolase, pyrimidine binding domain D0853_18335 PF00676 Dehydrogenase E1 component D0853_18350 PF00012 Hsp70 protein D0853_18355 PF04314 Copper chaperone PCu(A)C D0853_18380 PF01497 Periplasmic binding protein D0853_18385 PF01032 FecCD transport family D0853_18390 PF01032 FecCD transport family D0853_18395 PF00005 ABC transporter D0853_18400 PF13411 MerR HTH family regulatory protein D0853_18415 PF07715 TonB-dependent Receptor Plug Domain D0853_18415 PF00593 TonB dependent receptor D0853_18450 PF12805 FUSC-like inner membrane protein yccS D0853_18455 PF13361 UvrD-like helicase C-terminal domain D0853_18455 PF12462 DNA helicase IV / RNA helicase N terminal D0853_18455 PF00580 UvrD/REP helicase N-terminal domain D0853_18460 PF02142 MGS-like domain D0853_18465 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family D0853_18470 PF00672 HAMP domain D0853_18470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_18470 PF01627 Hpt domain D0853_18470 PF00072 Response regulator receiver domain D0853_18470 PF00512 His Kinase A (phospho-acceptor) domain D0853_18485 PF00072 Response regulator receiver domain D0853_18485 PF00486 Transcriptional regulatory protein, C terminal D0853_18495 PF00884 Sulfatase D0853_18500 PF00884 Sulfatase D0853_18510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_18510 PF03466 LysR substrate binding domain D0853_18515 PF00884 Sulfatase D0853_18520 PF13186 Iron-sulfur cluster-binding domain D0853_18520 PF04055 Radical SAM superfamily D0853_18525 PF17863 AAA lid domain D0853_18525 PF07726 ATPase family associated with various cellular activities (AAA) D0853_18540 PF00092 von Willebrand factor type A domain D0853_18555 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D0853_18560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_18560 PF03466 LysR substrate binding domain D0853_18565 PF00781 Diacylglycerol kinase catalytic domain D0853_18570 PF04076 Bacterial OB fold (BOF) protein D0853_18590 PF04055 Radical SAM superfamily D0853_18590 PF13186 Iron-sulfur cluster-binding domain D0853_18600 PF08774 VRR-NUC domain D0853_18600 PF18081 Fanconi anemia-associated nuclease SAP domain D0853_18620 PF01435 Peptidase family M48 D0853_18625 PF04011 LemA family D0853_18630 PF03606 C4-dicarboxylate anaerobic carrier D0853_18640 PF00583 Acetyltransferase (GNAT) family D0853_18640 PF00814 Glycoprotease family D0853_18650 PF00072 Response regulator receiver domain D0853_18650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_18655 PF00155 Aminotransferase class I and II D0853_18660 PF01926 50S ribosome-binding GTPase D0853_18670 PF01752 Collagenase D0853_18670 PF04151 Bacterial pre-peptidase C-terminal domain D0853_18670 PF08453 Peptidase family M9 N-terminal D0853_18680 PF12833 Helix-turn-helix domain D0853_18685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_18685 PF03466 LysR substrate binding domain D0853_18705 PF13629 Pilus formation protein N terminal region D0853_18705 PF00263 Bacterial type II and III secretion system protein D0853_18705 PF04972 BON domain D0853_18720 PF00437 Type II/IV secretion system protein D0853_18755 PF05736 OprF membrane domain D0853_18755 PF00691 OmpA family D0853_18765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_18765 PF03466 LysR substrate binding domain D0853_18770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_18770 PF03466 LysR substrate binding domain D0853_18780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_18780 PF00512 His Kinase A (phospho-acceptor) domain D0853_18780 PF00072 Response regulator receiver domain D0853_18780 PF09456 RcsC Alpha-Beta-Loop (ABL) D0853_18785 PF00563 EAL domain D0853_18785 PF00990 Diguanylate cyclase, GGDEF domain D0853_18785 PF03707 Bacterial signalling protein N terminal repeat D0853_18785 PF13188 PAS domain D0853_18790 PF00196 Bacterial regulatory proteins, luxR family D0853_18790 PF00072 Response regulator receiver domain D0853_18795 PF00990 Diguanylate cyclase, GGDEF domain D0853_18805 PF00072 Response regulator receiver domain D0853_18805 PF00196 Bacterial regulatory proteins, luxR family D0853_18830 PF00072 Response regulator receiver domain D0853_18830 PF01584 CheW-like domain D0853_18835 PF08334 Type II secretion system (T2SS), protein G D0853_18835 PF07963 Prokaryotic N-terminal methylation motif D0853_18850 PF00892 EamA-like transporter family D0853_18865 PF01569 PAP2 superfamily D0853_18875 PF02868 Thermolysin metallopeptidase, alpha-helical domain D0853_18875 PF04151 Bacterial pre-peptidase C-terminal domain D0853_18875 PF01447 Thermolysin metallopeptidase, catalytic domain D0853_18875 PF03413 Peptidase propeptide and YPEB domain D0853_18875 PF07504 Fungalysin/Thermolysin Propeptide Motif D0853_18880 PF00893 Small Multidrug Resistance protein D0853_18885 PF00892 EamA-like transporter family D0853_18905 PF00171 Aldehyde dehydrogenase family D0853_18910 PF00939 Sodium:sulfate symporter transmembrane region D0853_18915 PF00989 PAS fold D0853_18915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_18915 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain D0853_18915 PF17203 Single cache domain 3 D0853_18920 PF12431 Transcriptional regulator D0853_18920 PF00072 Response regulator receiver domain D0853_18930 PF13187 4Fe-4S dicluster domain D0853_18930 PF01645 Conserved region in glutamate synthase D0853_18940 PF00141 Peroxidase D0853_18955 PF01757 Acyltransferase family D0853_18965 PF00724 NADH:flavin oxidoreductase / NADH oxidase family D0853_18970 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D0853_18990 PF00571 CBS domain D0853_18990 PF03448 MgtE intracellular N domain D0853_18990 PF01769 Divalent cation transporter D0853_19020 PF01327 Polypeptide deformylase D0853_19025 PF09278 MerR, DNA binding D0853_19025 PF00376 MerR family regulatory protein D0853_19040 PF02253 Phospholipase A1 D0853_19060 PF00664 ABC transporter transmembrane region D0853_19060 PF00005 ABC transporter D0853_19065 PF00929 Exonuclease D0853_19065 PF02811 PHP domain D0853_19065 PF14579 Helix-hairpin-helix motif D0853_19065 PF17657 Bacterial DNA polymerase III alpha subunit finger domain D0853_19065 PF07733 Bacterial DNA polymerase III alpha NTPase domain D0853_19065 PF11490 DNA polymerase III polC-type N-terminus II D0853_19070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_19070 PF03466 LysR substrate binding domain D0853_19075 PF01039 Carboxyl transferase domain D0853_19075 PF17848 Acetyl-coA carboxylase zinc finger domain D0853_19080 PF01212 Beta-eliminating lyase D0853_19105 PF02347 Glycine cleavage system P-protein D0853_19110 PF01597 Glycine cleavage H-protein D0853_19115 PF00464 Serine hydroxymethyltransferase D0853_19125 PF01571 Aminomethyltransferase folate-binding domain D0853_19125 PF08669 Glycine cleavage T-protein C-terminal barrel domain D0853_19135 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D0853_19145 PF00873 AcrB/AcrD/AcrF family D0853_19155 PF02378 Phosphotransferase system, EIIC D0853_19155 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D0853_19160 PF00294 pfkB family carbohydrate kinase D0853_19165 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D0853_19165 PF00381 PTS HPr component phosphorylation site D0853_19170 PF00356 Bacterial regulatory proteins, lacI family D0853_19170 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family D0853_19190 PF00563 EAL domain D0853_19190 PF01590 GAF domain D0853_19190 PF00989 PAS fold D0853_19190 PF00990 Diguanylate cyclase, GGDEF domain D0853_19195 PF00528 Binding-protein-dependent transport system inner membrane component D0853_19200 PF00497 Bacterial extracellular solute-binding proteins, family 3 D0853_19205 PF00528 Binding-protein-dependent transport system inner membrane component D0853_19210 PF00005 ABC transporter D0853_19215 PF00224 Pyruvate kinase, barrel domain D0853_19215 PF02887 Pyruvate kinase, alpha/beta domain D0853_19220 PF07690 Major Facilitator Superfamily D0853_19230 PF00672 HAMP domain D0853_19230 PF00512 His Kinase A (phospho-acceptor) domain D0853_19230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_19235 PF00072 Response regulator receiver domain D0853_19235 PF02954 Bacterial regulatory protein, Fis family D0853_19235 PF14532 Sigma-54 interaction domain D0853_19245 PF00465 Iron-containing alcohol dehydrogenase D0853_19250 PF06719 AraC-type transcriptional regulator N-terminus D0853_19250 PF12833 Helix-turn-helix domain D0853_19260 PF00704 Glycosyl hydrolases family 18 D0853_19260 PF06483 Chitinase C D0853_19265 PF00483 Nucleotidyl transferase D0853_19270 PF01268 Formate--tetrahydrofolate ligase D0853_19275 PF00294 pfkB family carbohydrate kinase D0853_19295 PF11849 Domain of unknown function (DUF3369) D0853_19305 PF13419 Haloacid dehalogenase-like hydrolase D0853_19315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D0853_19325 PF04336 Acyl carrier protein phosphodiesterase D0853_19330 PF00270 DEAD/DEAH box helicase D0853_19330 PF00271 Helicase conserved C-terminal domain D0853_19335 PF00563 EAL domain D0853_19335 PF12792 CSS motif domain associated with EAL D0853_19350 PF01292 Prokaryotic cytochrome b561 D0853_19355 PF04264 YceI-like domain D0853_19360 PF01226 Formate/nitrite transporter D0853_19365 PF03466 LysR substrate binding domain D0853_19365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_19370 PF06496 Protein of unknown function (DUF1097) D0853_19375 PF11398 Protein of unknown function (DUF2813) D0853_19380 PF00149 Calcineurin-like phosphoesterase D0853_19380 PF02872 5'-nucleotidase, C-terminal domain D0853_19385 PF03741 Integral membrane protein TerC family D0853_19400 PF12262 Bacterial virulence factor lipase N-terminal D0853_19405 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) D0853_19420 PF03061 Thioesterase superfamily D0853_19430 PF12793 Sugar transport-related sRNA regulator N-term D0853_19430 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D0853_19455 PF01556 DnaJ C terminal domain D0853_19455 PF00684 DnaJ central domain D0853_19455 PF00226 DnaJ domain D0853_19465 PF13188 PAS domain D0853_19465 PF00563 EAL domain D0853_19465 PF00990 Diguanylate cyclase, GGDEF domain D0853_19465 PF03707 Bacterial signalling protein N terminal repeat D0853_19470 PF07055 Enoyl reductase FAD binding domain D0853_19470 PF12241 Trans-2-enoyl-CoA reductase catalytic region D0853_19470 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase D0853_19475 PF13472 GDSL-like Lipase/Acylhydrolase family D0853_19480 PF00005 ABC transporter D0853_19490 PF05430 S-adenosyl-L-methionine-dependent methyltransferase D0853_19490 PF01266 FAD dependent oxidoreductase D0853_19495 PF02626 Carboxyltransferase domain, subdomain A and B D0853_19500 PF02682 Carboxyltransferase domain, subdomain C and D D0853_19505 PF03746 LamB/YcsF family D0853_19510 PF00563 EAL domain D0853_19510 PF13426 PAS domain D0853_19510 PF05231 MASE1 D0853_19510 PF00990 Diguanylate cyclase, GGDEF domain D0853_19510 PF08447 PAS fold D0853_19510 PF08448 PAS fold D0853_19515 PF16363 GDP-mannose 4,6 dehydratase D0853_19525 PF00593 TonB dependent receptor D0853_19525 PF07715 TonB-dependent Receptor Plug Domain D0853_19530 PF03466 LysR substrate binding domain D0853_19530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_19535 PF00583 Acetyltransferase (GNAT) family D0853_19535 PF13607 Succinyl-CoA ligase like flavodoxin domain D0853_19535 PF13380 CoA binding domain D0853_19545 PF01820 D-ala D-ala ligase N-terminus D0853_19545 PF07478 D-ala D-ala ligase C-terminus D0853_19555 PF01253 Translation initiation factor SUI1 D0853_19665 PF05840 Bacteriophage replication gene A protein (GPA) D0853_19700 PF03466 LysR substrate binding domain D0853_19700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_19710 PF00582 Universal stress protein family D0853_19715 PF03701 Uncharacterised protein family (UPF0181) D0853_19730 PF00072 Response regulator receiver domain D0853_19730 PF00486 Transcriptional regulatory protein, C terminal D0853_19740 PF02233 NAD(P) transhydrogenase beta subunit D0853_19745 PF01262 Alanine dehydrogenase/PNT, C-terminal domain D0853_19745 PF05222 Alanine dehydrogenase/PNT, N-terminal domain D0853_19745 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch D0853_19760 PF00072 Response regulator receiver domain D0853_19760 PF00990 Diguanylate cyclase, GGDEF domain D0853_19770 PF00563 EAL domain D0853_19770 PF01590 GAF domain D0853_19770 PF00990 Diguanylate cyclase, GGDEF domain D0853_19770 PF00360 Phytochrome region D0853_19780 PF03459 TOBE domain D0853_19780 PF00005 ABC transporter D0853_19785 PF00528 Binding-protein-dependent transport system inner membrane component D0853_19795 PF07685 CobB/CobQ-like glutamine amidotransferase domain D0853_19800 PF04076 Bacterial OB fold (BOF) protein D0853_19810 PF18030 RimK PreATP-grasp domain D0853_19810 PF08443 RimK-like ATP-grasp domain D0853_19815 PF00155 Aminotransferase class I and II D0853_19820 PF12833 Helix-turn-helix domain D0853_19830 PF01554 MatE D0853_19840 PF13597 Anaerobic ribonucleoside-triphosphate reductase D0853_19840 PF03477 ATP cone domain D0853_19850 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D0853_19855 PF00873 AcrB/AcrD/AcrF family D0853_19865 PF04143 Sulphur transport D0853_19880 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D0853_19880 PF07992 Pyridine nucleotide-disulphide oxidoreductase D0853_19910 PF01389 OmpA-like transmembrane domain D0853_19910 PF00691 OmpA family D0853_19935 PF00384 Molybdopterin oxidoreductase D0853_19945 PF03466 LysR substrate binding domain D0853_19945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_19950 PF02634 FdhD/NarQ family D0853_19955 PF07690 Major Facilitator Superfamily D0853_19960 PF00072 Response regulator receiver domain D0853_19960 PF00196 Bacterial regulatory proteins, luxR family D0853_19965 PF07730 Histidine kinase D0853_19965 PF05231 MASE1 D0853_19965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_19970 PF07690 Major Facilitator Superfamily D0853_19975 PF01238 Phosphomannose isomerase type I D0853_19995 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal D0853_19995 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III D0853_20000 PF00085 Thioredoxin D0853_20005 PF07690 Major Facilitator Superfamily D0853_20015 PF01554 MatE D0853_20020 PF11756 Nitrous oxide-stimulated promoter D0853_20035 PF07715 TonB-dependent Receptor Plug Domain D0853_20035 PF00593 TonB dependent receptor D0853_20050 PF03605 Anaerobic c4-dicarboxylate membrane transporter D0853_20065 PF10414 Sirohaem synthase dimerisation region D0853_20065 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D0853_20065 PF14824 Sirohaem biosynthesis protein central D0853_20070 PF01226 Formate/nitrite transporter D0853_20075 PF13806 Rieske-like [2Fe-2S] domain D0853_20080 PF18267 Rubredoxin NAD+ reductase C-terminal domain D0853_20080 PF07992 Pyridine nucleotide-disulphide oxidoreductase D0853_20080 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain D0853_20080 PF01077 Nitrite and sulphite reductase 4Fe-4S domain D0853_20080 PF04324 BFD-like [2Fe-2S] binding domain D0853_20085 PF14760 Rnk N-terminus D0853_20085 PF01272 Transcription elongation factor, GreA/GreB, C-term D0853_20130 PF13462 Thioredoxin D0853_20130 PF06965 Na+/H+ antiporter 1 D0853_20155 PF09154 Domain of unknown function (DUF1939) D0853_20155 PF00128 Alpha amylase, catalytic domain D0853_20170 PF00672 HAMP domain D0853_20170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D0853_20175 PF01168 Alanine racemase, N-terminal domain D0853_20175 PF00842 Alanine racemase, C-terminal domain D0853_20195 PF01565 FAD binding domain D0853_20195 PF09330 D-lactate dehydrogenase, membrane binding D0853_20200 PF03466 LysR substrate binding domain D0853_20200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_20220 PF05762 VWA domain containing CoxE-like protein D0853_20225 PF07728 AAA domain (dynein-related subfamily) D0853_20225 PF12592 Protein of unknown function (DUF3763) D0853_20225 PF17868 AAA lid domain D0853_20235 PF01212 Beta-eliminating lyase D0853_20240 PF00034 Cytochrome c D0853_20250 PF03606 C4-dicarboxylate anaerobic carrier D0853_20260 PF07690 Major Facilitator Superfamily D0853_20270 PF08212 Lipocalin-like domain D0853_20290 PF13476 AAA domain D0853_20295 PF12320 Type 5 capsule protein repressor C-terminal domain D0853_20295 PF00149 Calcineurin-like phosphoesterase D0853_20310 PF04717 Type VI secretion system, phage-baseplate injector D0853_20310 PF16671 Actin cross-linking domain D0853_20320 PF10431 C-terminal, D2-small domain, of ClpB protein D0853_20320 PF17871 AAA lid domain D0853_20320 PF07724 AAA domain (Cdc48 subfamily) D0853_20320 PF00004 ATPase family associated with various cellular activities (AAA) D0853_20380 PF00691 OmpA family D0853_20380 PF13677 Membrane MotB of proton-channel complex MotA/MotB D0853_20400 PF00069 Protein kinase domain D0853_20400 PF03793 PASTA domain D0853_20425 PF00072 Response regulator receiver domain D0853_20425 PF00211 Adenylate and Guanylate cyclase catalytic domain D0853_20440 PF00440 Bacterial regulatory proteins, tetR family D0853_20440 PF08361 MAATS-type transcriptional repressor, C-terminal region D0853_20455 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain D0853_20455 PF04324 BFD-like [2Fe-2S] binding domain D0853_20455 PF07992 Pyridine nucleotide-disulphide oxidoreductase D0853_20455 PF13806 Rieske-like [2Fe-2S] domain D0853_20455 PF18267 Rubredoxin NAD+ reductase C-terminal domain D0853_20455 PF01077 Nitrite and sulphite reductase 4Fe-4S domain D0853_20460 PF00005 ABC transporter D0853_20465 PF00528 Binding-protein-dependent transport system inner membrane component D0853_20480 PF08376 Nitrate and nitrite sensing D0853_20480 PF03861 ANTAR domain D0853_20485 PF01738 Dienelactone hydrolase family D0853_20495 PF00591 Glycosyl transferase family, a/b domain D0853_20495 PF02885 Glycosyl transferase family, helical bundle domain D0853_20500 PF10414 Sirohaem synthase dimerisation region D0853_20500 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D0853_20500 PF14824 Sirohaem biosynthesis protein central D0853_20505 PF00384 Molybdopterin oxidoreductase D0853_20505 PF01568 Molydopterin dinucleotide binding domain D0853_20505 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D0853_20515 PF03222 Tryptophan/tyrosine permease family D0853_20525 PF00990 Diguanylate cyclase, GGDEF domain D0853_20525 PF00072 Response regulator receiver domain D0853_20535 PF00082 Subtilase family D0853_20535 PF01483 Proprotein convertase P-domain D0853_20545 PF00245 Alkaline phosphatase D0853_20560 PF00072 Response regulator receiver domain D0853_20560 PF00486 Transcriptional regulatory protein, C terminal D0853_20580 PF01048 Phosphorylase superfamily D0853_20585 PF04973 Nicotinamide mononucleotide transporter D0853_20595 PF00356 Bacterial regulatory proteins, lacI family D0853_20600 PF00294 pfkB family carbohydrate kinase D0853_20605 PF13407 Periplasmic binding protein domain D0853_20610 PF02653 Branched-chain amino acid transport system / permease component D0853_20615 PF00005 ABC transporter D0853_20620 PF05025 RbsD / FucU transport protein family D0853_20625 PF00990 Diguanylate cyclase, GGDEF domain D0853_20625 PF00563 EAL domain D0853_20630 PF01048 Phosphorylase superfamily D0853_20675 PF04116 Fatty acid hydroxylase superfamily D0853_20690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_20690 PF00512 His Kinase A (phospho-acceptor) domain D0853_20690 PF09308 LuxQ, periplasmic D0853_20690 PF00072 Response regulator receiver domain D0853_20695 PF00034 Cytochrome c D0853_20695 PF03150 Di-haem cytochrome c peroxidase D0853_20710 PF13188 PAS domain D0853_20710 PF03707 Bacterial signalling protein N terminal repeat D0853_20710 PF00990 Diguanylate cyclase, GGDEF domain D0853_20710 PF00563 EAL domain D0853_20720 PF16200 C-terminal region of band_7 D0853_20720 PF01145 SPFH domain / Band 7 family D0853_20730 PF00881 Nitroreductase family D0853_20735 PF00005 ABC transporter D0853_20735 PF00571 CBS domain D0853_20740 PF00528 Binding-protein-dependent transport system inner membrane component D0853_20745 PF04069 Substrate binding domain of ABC-type glycine betaine transport system D0853_20750 PF05199 GMC oxidoreductase D0853_20750 PF00732 GMC oxidoreductase D0853_20755 PF00171 Aldehyde dehydrogenase family D0853_20760 PF00440 Bacterial regulatory proteins, tetR family D0853_20760 PF13977 BetI-type transcriptional repressor, C-terminal D0853_20765 PF00990 Diguanylate cyclase, GGDEF domain D0853_20765 PF17151 Periplasmic sensor domain D0853_20780 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D0853_20780 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D0853_20790 PF00378 Enoyl-CoA hydratase/isomerase D0853_20795 PF02770 Acyl-CoA dehydrogenase, middle domain D0853_20795 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D0853_20795 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D0853_20800 PF00171 Aldehyde dehydrogenase family D0853_20805 PF02803 Thiolase, C-terminal domain D0853_20805 PF00108 Thiolase, N-terminal domain D0853_20810 PF09278 MerR, DNA binding D0853_20810 PF00376 MerR family regulatory protein D0853_20815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D0853_20815 PF02770 Acyl-CoA dehydrogenase, middle domain D0853_20815 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D0853_20820 PF01039 Carboxyl transferase domain D0853_20825 PF00378 Enoyl-CoA hydratase/isomerase D0853_20830 PF00289 Biotin carboxylase, N-terminal domain D0853_20830 PF00364 Biotin-requiring enzyme D0853_20830 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D0853_20830 PF02785 Biotin carboxylase C-terminal domain D0853_20835 PF00682 HMGL-like D0853_20840 PF00072 Response regulator receiver domain D0853_20840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_20840 PF00672 HAMP domain D0853_20840 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D0853_20840 PF00512 His Kinase A (phospho-acceptor) domain D0853_20840 PF01627 Hpt domain D0853_20855 PF12795 Mechanosensitive ion channel porin domain D0853_20855 PF12794 Mechanosensitive ion channel inner membrane domain 1 D0853_20855 PF00924 Mechanosensitive ion channel D0853_20865 PF12464 Maltose acetyltransferase D0853_20865 PF14602 Hexapeptide repeat of succinyl-transferase D0853_20870 PF00155 Aminotransferase class I and II D0853_20870 PF00392 Bacterial regulatory proteins, gntR family D0853_20875 PF01654 Cytochrome bd terminal oxidase subunit I D0853_20880 PF02322 Cytochrome bd terminal oxidase subunit II D0853_20890 PF02567 Phenazine biosynthesis-like protein D0853_20895 PF02627 Carboxymuconolactone decarboxylase family D0853_20900 PF13411 MerR HTH family regulatory protein D0853_20910 PF00034 Cytochrome c D0853_20920 PF05724 Thiopurine S-methyltransferase (TPMT) D0853_20925 PF14535 AMP-binding enzyme C-terminal domain D0853_20925 PF00501 AMP-binding enzyme D0853_20930 PF00005 ABC transporter D0853_20955 PF00005 ABC transporter D0853_20955 PF12399 Branched-chain amino acid ATP-binding cassette transporter D0853_20970 PF01012 Electron transfer flavoprotein domain D0853_20975 PF01012 Electron transfer flavoprotein domain D0853_20975 PF00766 Electron transfer flavoprotein FAD-binding domain D0853_20980 PF00501 AMP-binding enzyme D0853_20980 PF13193 AMP-binding enzyme C-terminal domain D0853_20985 PF00478 IMP dehydrogenase / GMP reductase domain D0853_20990 PF01256 Carbohydrate kinase D0853_20990 PF03853 YjeF-related protein N-terminus D0853_21000 PF00072 Response regulator receiver domain D0853_21005 PF00248 Aldo/keto reductase family D0853_21020 PF00654 Voltage gated chloride channel D0853_21030 PF01566 Natural resistance-associated macrophage protein D0853_21035 PF01227 GTP cyclohydrolase I D0853_21040 PF00994 Probable molybdopterin binding domain D0853_21040 PF03454 MoeA C-terminal region (domain IV) D0853_21040 PF03453 MoeA N-terminal region (domain I and II) D0853_21045 PF00899 ThiF family D0853_21065 PF00581 Rhodanese-like domain D0853_21070 PF03707 Bacterial signalling protein N terminal repeat D0853_21070 PF00563 EAL domain D0853_21070 PF00990 Diguanylate cyclase, GGDEF domain D0853_21075 PF08329 Chitinase A, N-terminal domain D0853_21075 PF00704 Glycosyl hydrolases family 18 D0853_21095 PF00923 Transaldolase/Fructose-6-phosphate aldolase D0853_21100 PF02779 Transketolase, pyrimidine binding domain D0853_21100 PF02780 Transketolase, C-terminal domain D0853_21100 PF00456 Transketolase, thiamine diphosphate binding domain D0853_21105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D0853_21105 PF08447 PAS fold D0853_21115 PF07690 Major Facilitator Superfamily D0853_21120 PF00793 DAHP synthetase I family D0853_21130 PF00691 OmpA family D0853_21130 PF01389 OmpA-like transmembrane domain D0853_21135 PF13419 Haloacid dehalogenase-like hydrolase D0853_21140 PF00472 RF-1 domain D0853_21145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D0853_21145 PF12729 Four helix bundle sensory module for signal transduction D0853_21145 PF00672 HAMP domain D0853_21150 PF00873 AcrB/AcrD/AcrF family D0853_21155 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D0853_21160 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D0853_21165 PF07687 Peptidase dimerisation domain D0853_21165 PF01546 Peptidase family M20/M25/M40 D0853_21180 PF00196 Bacterial regulatory proteins, luxR family D0853_21180 PF00072 Response regulator receiver domain D0853_21185 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term D0853_21185 PF00672 HAMP domain D0853_21185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_21185 PF07730 Histidine kinase D0853_21190 PF13187 4Fe-4S dicluster domain D0853_21190 PF12838 4Fe-4S dicluster domain D0853_21200 PF01568 Molydopterin dinucleotide binding domain D0853_21200 PF00384 Molybdopterin oxidoreductase D0853_21200 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D0853_21205 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) D0853_21210 PF03264 NapC/NirT cytochrome c family, N-terminal region D0853_21220 PF00561 alpha/beta hydrolase fold D0853_21220 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus D0853_21230 PF00108 Thiolase, N-terminal domain D0853_21230 PF02803 Thiolase, C-terminal domain D0853_21235 PF00106 short chain dehydrogenase D0853_21240 PF01810 LysE type translocator D0853_21250 PF07549 SecD/SecF GG Motif D0853_21250 PF02355 Protein export membrane protein D0853_21255 PF07549 SecD/SecF GG Motif D0853_21255 PF02355 Protein export membrane protein D0853_21255 PF13721 SecD export protein N-terminal TM region D0853_21285 PF01037 Lrp/AsnC ligand binding domain D0853_21305 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D0853_21305 PF00529 HlyD membrane-fusion protein of T1SS D0853_21315 PF00072 Response regulator receiver domain D0853_21315 PF09308 LuxQ, periplasmic D0853_21315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_21315 PF00512 His Kinase A (phospho-acceptor) domain D0853_21320 PF13407 Periplasmic binding protein domain D0853_21325 PF01541 GIY-YIG catalytic domain D0853_21330 PF04337 Protein of unknown function, DUF480 D0853_21345 PF04363 Protein of unknown function (DUF496) D0853_21350 PF01554 MatE D0853_21355 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D0853_21360 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D0853_21360 PF00072 Response regulator receiver domain D0853_21360 PF01627 Hpt domain D0853_21360 PF00512 His Kinase A (phospho-acceptor) domain D0853_21360 PF00672 HAMP domain D0853_21360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_21365 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain D0853_21365 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain D0853_21380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_21380 PF03466 LysR substrate binding domain D0853_21385 PF01037 Lrp/AsnC ligand binding domain D0853_21385 PF13404 AsnC-type helix-turn-helix domain D0853_21395 PF13520 Amino acid permease D0853_21400 PF00155 Aminotransferase class I and II D0853_21400 PF00392 Bacterial regulatory proteins, gntR family D0853_21410 PF03109 ABC1 family D0853_21415 PF03448 MgtE intracellular N domain D0853_21415 PF01769 Divalent cation transporter D0853_21415 PF00571 CBS domain D0853_21425 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin D0853_21430 PF07969 Amidohydrolase family D0853_21440 PF01966 HD domain D0853_21455 PF07690 Major Facilitator Superfamily D0853_21465 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase D0853_21470 PF00255 Glutathione peroxidase D0853_21485 PF02371 Transposase IS116/IS110/IS902 family D0853_21485 PF01548 Transposase D0853_21535 PF06958 S-type Pyocin D0853_21540 PF01320 Colicin immunity protein / pyocin immunity protein D0853_21555 PF13538 UvrD-like helicase C-terminal domain D0853_21555 PF14490 Helix-hairpin-helix containing domain D0853_21555 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain D0853_21580 PF01323 DSBA-like thioredoxin domain D0853_21600 PF00106 short chain dehydrogenase D0853_21605 PF00486 Transcriptional regulatory protein, C terminal D0853_21605 PF00072 Response regulator receiver domain D0853_21610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_21610 PF00512 His Kinase A (phospho-acceptor) domain D0853_21610 PF00672 HAMP domain D0853_21620 PF01219 Prokaryotic diacylglycerol kinase D0853_21625 PF08019 Phosphoethanolamine transferase EptA/EptB D0853_21625 PF00884 Sulfatase D0853_21630 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D0853_21640 PF07690 Major Facilitator Superfamily D0853_21655 PF01047 MarR family D0853_21665 PF01734 Patatin-like phospholipase D0853_21675 PF00313 'Cold-shock' DNA-binding domain D0853_21695 PF00962 Adenosine/AMP deaminase D0853_21700 PF00462 Glutaredoxin D0853_21700 PF08534 Redoxin D0853_21715 PF07943 Penicillin-binding protein 5, C-terminal domain D0853_21715 PF00768 D-alanyl-D-alanine carboxypeptidase D0853_21730 PF02798 Glutathione S-transferase, N-terminal domain D0853_21735 PF00440 Bacterial regulatory proteins, tetR family D0853_21735 PF02909 Tetracyclin repressor-like, C-terminal domain D0853_21740 PF01872 RibD C-terminal domain D0853_21840 PF03347 Vibrio thermostable direct hemolysin D0853_21890 PF00563 EAL domain D0853_21890 PF12792 CSS motif domain associated with EAL D0853_21975 PF02874 ATP synthase alpha/beta family, beta-barrel domain D0853_21975 PF18269 T3SS EscN ATPase C-terminal domain D0853_21975 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D0853_21995 PF00813 FliP family D0853_22030 PF00486 Transcriptional regulatory protein, C terminal D0853_22055 PF00691 OmpA family D0853_22060 PF01312 FlhB HrpN YscU SpaS Family D0853_22065 PF00771 FHIPEP family D0853_22180 PF13322 Domain of unknown function (DUF4092) D0853_22180 PF13402 Peptidase M60, enhancin and enhancin-like D0853_22180 PF17291 N-terminal domain of M60-like peptidases D0853_22195 PF03347 Vibrio thermostable direct hemolysin D0853_22305 PF00528 Binding-protein-dependent transport system inner membrane component D0853_22310 PF14785 Maltose transport system permease protein MalF P2 domain D0853_22310 PF00528 Binding-protein-dependent transport system inner membrane component D0853_22315 PF01547 Bacterial extracellular solute-binding protein D0853_22320 PF00005 ABC transporter D0853_22320 PF08402 TOBE domain D0853_22325 PF02397 Bacterial sugar transferase D0853_22340 PF13807 G-rich domain on putative tyrosine kinase D0853_22340 PF02706 Chain length determinant protein D0853_22340 PF13614 AAA domain D0853_22350 PF00534 Glycosyl transferases group 1 D0853_22350 PF13439 Glycosyltransferase Family 4 D0853_22385 PF16925 Tetracyclin repressor-like, C-terminal domain D0853_22385 PF00440 Bacterial regulatory proteins, tetR family D0853_22390 PF00107 Zinc-binding dehydrogenase D0853_22390 PF16884 N-terminal domain of oxidoreductase D0853_22395 PF13417 Glutathione S-transferase, N-terminal domain D0853_22400 PF00199 Catalase D0853_22400 PF06628 Catalase-related immune-responsive D0853_22405 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D0853_22405 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D0853_22415 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D0853_22425 PF12833 Helix-turn-helix domain D0853_22430 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D0853_22430 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D0853_22435 PF01238 Phosphomannose isomerase type I D0853_22445 PF13419 Haloacid dehalogenase-like hydrolase D0853_22450 PF00127 Copper binding proteins, plastocyanin/azurin family D0853_22455 PF00990 Diguanylate cyclase, GGDEF domain D0853_22455 PF03707 Bacterial signalling protein N terminal repeat D0853_22455 PF00563 EAL domain D0853_22460 PF02386 Cation transport protein D0853_22465 PF02254 TrkA-N domain D0853_22465 PF02080 TrkA-C domain D0853_22470 PF00486 Transcriptional regulatory protein, C terminal D0853_22470 PF00072 Response regulator receiver domain D0853_22475 PF00989 PAS fold D0853_22475 PF00512 His Kinase A (phospho-acceptor) domain D0853_22475 PF16736 Single Cache-like D0853_22475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_22480 PF00664 ABC transporter transmembrane region D0853_22480 PF00005 ABC transporter D0853_22485 PF07715 TonB-dependent Receptor Plug Domain D0853_22485 PF00593 TonB dependent receptor D0853_22490 PF00005 ABC transporter D0853_22495 PF01497 Periplasmic binding protein D0853_22500 PF01032 FecCD transport family D0853_22510 PF00691 OmpA family D0853_22525 PF00529 HlyD membrane-fusion protein of T1SS D0853_22530 PF00005 ABC transporter D0853_22530 PF00664 ABC transporter transmembrane region D0853_22540 PF00196 Bacterial regulatory proteins, luxR family D0853_22545 PF00196 Bacterial regulatory proteins, luxR family D0853_22555 PF02743 Cache domain D0853_22555 PF00672 HAMP domain D0853_22555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D0853_22565 PF17863 AAA lid domain D0853_22565 PF07726 ATPase family associated with various cellular activities (AAA) D0853_22570 PF01882 Protein of unknown function DUF58 D0853_22580 PF13519 von Willebrand factor type A domain D0853_22585 PF13519 von Willebrand factor type A domain D0853_22600 PF00005 ABC transporter D0853_22605 PF00528 Binding-protein-dependent transport system inner membrane component D0853_22610 PF00528 Binding-protein-dependent transport system inner membrane component D0853_22615 PF12849 PBP superfamily domain D0853_22620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D0853_22620 PF00672 HAMP domain D0853_22640 PF00593 TonB dependent receptor D0853_22640 PF07715 TonB-dependent Receptor Plug Domain D0853_22645 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain D0853_22645 PF00326 Prolyl oligopeptidase family D0853_22650 PF00270 DEAD/DEAH box helicase D0853_22650 PF00271 Helicase conserved C-terminal domain D0853_22660 PF03734 L,D-transpeptidase catalytic domain D0853_22660 PF01476 LysM domain D0853_22660 PF17969 L,D-transpeptidase C-terminal domain D0853_22665 PF00875 DNA photolyase D0853_22665 PF03441 FAD binding domain of DNA photolyase D0853_22670 PF13411 MerR HTH family regulatory protein D0853_22675 PF08349 Protein of unknown function (DUF1722) D0853_22685 PF01048 Phosphorylase superfamily D0853_22700 PF00990 Diguanylate cyclase, GGDEF domain D0853_22705 PF11742 Protein of unknown function (DUF3302) D0853_22710 PF00529 HlyD membrane-fusion protein of T1SS D0853_22710 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D0853_22715 PF07155 ECF-type riboflavin transporter, S component D0853_22720 PF00005 ABC transporter D0853_22720 PF12558 ATP-binding cassette cobalt transporter D0853_22735 PF12801 4Fe-4S binding domain D0853_22735 PF13237 4Fe-4S dicluster domain D0853_22740 PF12800 4Fe-4S binding domain D0853_22740 PF12838 4Fe-4S dicluster domain D0853_22745 PF00583 Acetyltransferase (GNAT) family D0853_22765 PF12945 Flagellar protein YcgR D0853_22765 PF07238 PilZ domain D0853_22770 PF00672 HAMP domain D0853_22770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D0853_22775 PF05362 Lon protease (S16) C-terminal proteolytic domain D0853_22775 PF13654 AAA domain D0853_22785 PF00005 ABC transporter D0853_22785 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D0853_22790 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain D0853_22790 PF00326 Prolyl oligopeptidase family D0853_22795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_22795 PF03466 LysR substrate binding domain D0853_22800 PF02652 L-lactate permease D0853_22805 PF01070 FMN-dependent dehydrogenase D0853_22815 PF00924 Mechanosensitive ion channel D0853_22820 PF00194 Eukaryotic-type carbonic anhydrase D0853_22855 PF00107 Zinc-binding dehydrogenase D0853_22855 PF08240 Alcohol dehydrogenase GroES-like domain D0853_22860 PF00155 Aminotransferase class I and II D0853_22865 PF03707 Bacterial signalling protein N terminal repeat D0853_22865 PF00563 EAL domain D0853_22865 PF00990 Diguanylate cyclase, GGDEF domain D0853_22870 PF00497 Bacterial extracellular solute-binding proteins, family 3 D0853_22875 PF00266 Aminotransferase class-V D0853_22880 PF00080 Copper/zinc superoxide dismutase (SODC) D0853_22885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_22885 PF00072 Response regulator receiver domain D0853_22885 PF08448 PAS fold D0853_22885 PF13426 PAS domain D0853_22885 PF00512 His Kinase A (phospho-acceptor) domain D0853_22890 PF00072 Response regulator receiver domain D0853_22890 PF00486 Transcriptional regulatory protein, C terminal D0853_22920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_22920 PF03466 LysR substrate binding domain D0853_22925 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D0853_22960 PF03466 LysR substrate binding domain D0853_22960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_22975 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D0853_22975 PF18269 T3SS EscN ATPase C-terminal domain D0853_22985 PF14841 FliG middle domain D0853_22985 PF14842 FliG N-terminal domain D0853_22985 PF01706 FliG C-terminal domain D0853_22990 PF08345 Flagellar M-ring protein C-terminal D0853_22990 PF01514 Secretory protein of YscJ/FliF family D0853_22995 PF02049 Flagellar hook-basal body complex protein FliE D0853_23000 PF00072 Response regulator receiver domain D0853_23000 PF00158 Sigma-54 interaction domain D0853_23000 PF02954 Bacterial regulatory protein, Fis family D0853_23015 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term D0853_23020 PF00813 FliP family D0853_23025 PF01313 Bacterial export proteins, family 3 D0853_23030 PF01311 Bacterial export proteins, family 1 D0853_23035 PF01312 FlhB HrpN YscU SpaS Family D0853_23040 PF00771 FHIPEP family D0853_23050 PF00700 Bacterial flagellin C-terminal helical region D0853_23050 PF00669 Bacterial flagellin N-terminal helical region D0853_23060 PF07195 Flagellar hook-associated protein 2 C-terminus D0853_23060 PF07196 Flagellin hook IN motif D0853_23060 PF02465 Flagellar hook-associated protein 2 N-terminus D0853_23065 PF02561 Flagellar protein FliS D0853_23080 PF03748 Flagellar basal body-associated protein FliL D0853_23085 PF04542 Sigma-70 region 2 D0853_23085 PF04545 Sigma-70, region 4 D0853_23090 PF01618 MotA/TolQ/ExbB proton channel family D0853_23095 PF13677 Membrane MotB of proton-channel complex MotA/MotB D0853_23095 PF00691 OmpA family D0853_23105 PF08000 Bacterial PH domain D0853_23150 PF04055 Radical SAM superfamily D0853_23155 PF00923 Transaldolase/Fructose-6-phosphate aldolase D0853_23165 PF00583 Acetyltransferase (GNAT) family D0853_23180 PF07690 Major Facilitator Superfamily D0853_23185 PF03466 LysR substrate binding domain D0853_23185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_23190 PF00892 EamA-like transporter family D0853_23215 PF13533 Biotin-lipoyl like D0853_23225 PF01594 AI-2E family transporter D0853_23230 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) D0853_23240 PF00175 Oxidoreductase NAD-binding domain D0853_23240 PF00970 Oxidoreductase FAD-binding domain D0853_23250 PF09905 DNA-binding protein VF530 D0853_23255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_23255 PF03466 LysR substrate binding domain D0853_23265 PF00881 Nitroreductase family D0853_23270 PF12833 Helix-turn-helix domain D0853_23270 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term D0853_23275 PF00686 Starch binding domain D0853_23275 PF00128 Alpha amylase, catalytic domain D0853_23280 PF07943 Penicillin-binding protein 5, C-terminal domain D0853_23280 PF00768 D-alanyl-D-alanine carboxypeptidase D0853_23285 PF00561 alpha/beta hydrolase fold D0853_23300 PF18416 N-acetylglucosamine binding protein domain 2 D0853_23300 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading D0853_23305 PF01734 Patatin-like phospholipase D0853_23310 PF01914 MarC family integral membrane protein D0853_23315 PF00881 Nitroreductase family D0853_23320 PF18412 Outer-membrane lipoprotein Wza C-terminal domain D0853_23320 PF10531 SLBB domain D0853_23320 PF02563 Polysaccharide biosynthesis/export protein D0853_23325 PF01451 Low molecular weight phosphotyrosine protein phosphatase D0853_23330 PF13807 G-rich domain on putative tyrosine kinase D0853_23330 PF13614 AAA domain D0853_23330 PF02706 Chain length determinant protein D0853_23340 PF08803 Putative mono-oxygenase ydhR D0853_23345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_23345 PF03466 LysR substrate binding domain D0853_23355 PF00375 Sodium:dicarboxylate symporter family D0853_23360 PF06803 Protein of unknown function (DUF1232) D0853_23365 PF01546 Peptidase family M20/M25/M40 D0853_23365 PF07687 Peptidase dimerisation domain D0853_23370 PF07670 Nucleoside recognition D0853_23375 PF07670 Nucleoside recognition D0853_23390 PF00128 Alpha amylase, catalytic domain D0853_23395 PF00912 Transglycosylase D0853_23400 PF02806 Alpha amylase, C-terminal all-beta domain D0853_23400 PF00128 Alpha amylase, catalytic domain D0853_23400 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) D0853_23405 PF02446 4-alpha-glucanotransferase D0853_23410 PF00343 Carbohydrate phosphorylase D0853_23425 PF00196 Bacterial regulatory proteins, luxR family D0853_23425 PF17874 MalT-like TPR region D0853_23440 PF02630 SCO1/SenC D0853_23450 PF00367 phosphotransferase system, EIIB D0853_23450 PF02378 Phosphotransferase system, EIIC D0853_23455 PF03193 RsgA GTPase D0853_23460 PF00375 Sodium:dicarboxylate symporter family D0853_23470 PF08543 Phosphomethylpyrimidine kinase D0853_23480 PF13520 Amino acid permease D0853_23485 PF01276 Orn/Lys/Arg decarboxylase, major domain D0853_23485 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain D0853_23485 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain D0853_23500 PF03714 Bacterial pullanase-associated domain D0853_23500 PF18494 Pullulanase Ins domain D0853_23500 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) D0853_23500 PF17967 Pullulanase N2 domain D0853_23500 PF11852 Domain of unknown function (DUF3372) D0853_23505 PF04231 Endonuclease I D0853_23515 PF02903 Alpha amylase, N-terminal ig-like domain D0853_23515 PF00128 Alpha amylase, catalytic domain D0853_23515 PF16657 Maltogenic Amylase, C-terminal domain D0853_23530 PF02264 LamB porin D0853_23535 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) D0853_23535 PF00128 Alpha amylase, catalytic domain D0853_23545 PF07690 Major Facilitator Superfamily D0853_23555 PF01551 Peptidase family M23 D0853_23555 PF04225 Opacity-associated protein A LysM-like domain D0853_23565 PF00675 Insulinase (Peptidase family M16) D0853_23565 PF05193 Peptidase M16 inactive domain D0853_23570 PF00672 HAMP domain D0853_23570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D0853_23575 PF00005 ABC transporter D0853_23580 PF01032 FecCD transport family D0853_23585 PF01032 FecCD transport family D0853_23590 PF01497 Periplasmic binding protein D0853_23595 PF00593 TonB dependent receptor D0853_23595 PF07715 TonB-dependent Receptor Plug Domain D0853_23595 PF07660 Secretin and TonB N terminus short domain D0853_23600 PF00593 TonB dependent receptor D0853_23600 PF07715 TonB-dependent Receptor Plug Domain D0853_23605 PF00206 Lyase D0853_23605 PF02655 ATP-grasp domain D0853_23610 PF04183 IucA / IucC family D0853_23610 PF06276 Ferric iron reductase FhuF-like transporter D0853_23620 PF04183 IucA / IucC family D0853_23620 PF06276 Ferric iron reductase FhuF-like transporter D0853_23625 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain D0853_23625 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain D0853_23630 PF01547 Bacterial extracellular solute-binding protein D0853_23635 PF08521 Two-component sensor kinase N-terminal D0853_23635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_23635 PF00512 His Kinase A (phospho-acceptor) domain D0853_23640 PF00486 Transcriptional regulatory protein, C terminal D0853_23640 PF00072 Response regulator receiver domain D0853_23650 PF00367 phosphotransferase system, EIIB D0853_23650 PF02378 Phosphotransferase system, EIIC D0853_23665 PF02653 Branched-chain amino acid transport system / permease component D0853_23670 PF00005 ABC transporter D0853_23675 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family D0853_23680 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D0853_23680 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D0853_23685 PF00596 Class II Aldolase and Adducin N-terminal domain D0853_23690 PF02610 L-arabinose isomerase D0853_23690 PF11762 L-arabinose isomerase C-terminal domain D0853_23700 PF12833 Helix-turn-helix domain D0853_23700 PF02311 AraC-like ligand binding domain D0853_23715 PF02566 OsmC-like protein D0853_23720 PF01047 MarR family D0853_23725 PF10417 C-terminal domain of 1-Cys peroxiredoxin D0853_23725 PF00578 AhpC/TSA family D0853_23730 PF13192 Thioredoxin domain D0853_23730 PF07992 Pyridine nucleotide-disulphide oxidoreductase D0853_23750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_23750 PF03466 LysR substrate binding domain D0853_23760 PF01965 DJ-1/PfpI family D0853_23760 PF12833 Helix-turn-helix domain D0853_23765 PF04542 Sigma-70 region 2 D0853_23765 PF08281 Sigma-70, region 4 D0853_23780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D0853_23780 PF12729 Four helix bundle sensory module for signal transduction D0853_23780 PF00672 HAMP domain D0853_23785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_23785 PF03466 LysR substrate binding domain D0853_23790 PF02056 Family 4 glycosyl hydrolase D0853_23790 PF11975 Family 4 glycosyl hydrolase C-terminal domain D0853_23805 PF03473 MOSC domain D0853_23805 PF03475 3-alpha domain D0853_23810 PF00271 Helicase conserved C-terminal domain D0853_23810 PF00270 DEAD/DEAH box helicase D0853_23815 PF03786 D-mannonate dehydratase (UxuA) D0853_23820 PF07729 FCD domain D0853_23820 PF00392 Bacterial regulatory proteins, gntR family D0853_23825 PF03480 Bacterial extracellular solute-binding protein, family 7 D0853_23830 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component D0853_23835 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D0853_23840 PF01232 Mannitol dehydrogenase Rossmann domain D0853_23840 PF08125 Mannitol dehydrogenase C-terminal domain D0853_23845 PF02614 Glucuronate isomerase D0853_23850 PF00294 pfkB family carbohydrate kinase D0853_23855 PF01081 KDPG and KHG aldolase D0853_23860 PF10688 Bacterial inner membrane protein D0853_23880 PF06719 AraC-type transcriptional regulator N-terminus D0853_23880 PF12833 Helix-turn-helix domain D0853_23890 PF00664 ABC transporter transmembrane region D0853_23890 PF00005 ABC transporter D0853_23900 PF01037 Lrp/AsnC ligand binding domain D0853_23935 PF00474 Sodium:solute symporter family D0853_23945 PF18327 Proline utilization A proline dehydrogenase N-terminal domain D0853_23945 PF00171 Aldehyde dehydrogenase family D0853_23945 PF01619 Proline dehydrogenase D0853_23945 PF14850 DNA-binding domain of Proline dehydrogenase D0853_23950 PF12833 Helix-turn-helix domain D0853_23965 PF01243 Pyridoxamine 5'-phosphate oxidase D0853_23965 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region D0853_23970 PF00512 His Kinase A (phospho-acceptor) domain D0853_23970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_23970 PF02743 Cache domain D0853_23975 PF00072 Response regulator receiver domain D0853_23975 PF00158 Sigma-54 interaction domain D0853_23975 PF02954 Bacterial regulatory protein, Fis family D0853_23980 PF00529 HlyD membrane-fusion protein of T1SS D0853_23995 PF00005 ABC transporter D0853_23995 PF03412 Peptidase C39 family D0853_23995 PF00664 ABC transporter transmembrane region D0853_24005 PF03358 NADPH-dependent FMN reductase D0853_24010 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D0853_24015 PF00246 Zinc carboxypeptidase D0853_24020 PF01418 Helix-turn-helix domain, rpiR family D0853_24020 PF01380 SIS domain D0853_24030 PF01380 SIS domain D0853_24035 PF02378 Phosphotransferase system, EIIC D0853_24035 PF00367 phosphotransferase system, EIIB D0853_24040 PF00267 Gram-negative porin D0853_24045 PF03575 Peptidase family S51 D0853_24050 PF03466 LysR substrate binding domain D0853_24050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_24055 PF00132 Bacterial transferase hexapeptide (six repeats) D0853_24065 PF13718 GNAT acetyltransferase 2 D0853_24065 PF05127 Helicase D0853_24070 PF02195 ParB-like nuclease domain D0853_24070 PF08775 ParB family D0853_24075 PF13614 AAA domain D0853_24075 PF18607 ParA helix turn helix domain D0853_24095 PF00005 ABC transporter D0853_24095 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D0853_24100 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D0853_24100 PF00005 ABC transporter D0853_24110 PF00925 GTP cyclohydrolase II D0853_24110 PF08719 Domain of unknown function (DUF1768) D0853_24125 PF00072 Response regulator receiver domain D0853_24125 PF00672 HAMP domain D0853_24125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_24125 PF00512 His Kinase A (phospho-acceptor) domain D0853_24125 PF01627 Hpt domain D0853_24125 PF17149 Periplasmic sensor domain found in signal transduction proteins D0853_24135 PF01709 Transcriptional regulator D0853_24140 PF01098 Cell cycle protein D0853_24155 PF00005 ABC transporter D0853_24175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_24175 PF06580 Histidine kinase D0853_24175 PF13492 GAF domain D0853_24175 PF07694 5TMR of 5TMR-LYT D0853_24180 PF04397 LytTr DNA-binding domain D0853_24180 PF00072 Response regulator receiver domain D0853_24190 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD D0853_24195 PF17200 Single Cache domain 2 D0853_24195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D0853_24195 PF00672 HAMP domain D0853_24210 PF00132 Bacterial transferase hexapeptide (six repeats) D0853_24225 PF03616 Sodium/glutamate symporter D0853_24235 PF00005 ABC transporter D0853_24240 PF00392 Bacterial regulatory proteins, gntR family D0853_24240 PF00155 Aminotransferase class I and II D0853_24245 PF03616 Sodium/glutamate symporter D0853_24260 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase D0853_24275 PF03466 LysR substrate binding domain D0853_24275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_24280 PF02678 Pirin D0853_24280 PF17954 Quercetinase C-terminal cupin domain D0853_24285 PF07681 DoxX D0853_24300 PF06029 AlkA N-terminal domain D0853_24300 PF00730 HhH-GPD superfamily base excision DNA repair protein D0853_24305 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain D0853_24305 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain D0853_24315 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 D0853_24325 PF03600 Citrate transporter D0853_24345 PF08329 Chitinase A, N-terminal domain D0853_24345 PF00704 Glycosyl hydrolases family 18 D0853_24355 PF06865 Pyrimidine/purine nucleoside phosphorylase D0853_24365 PF00563 EAL domain D0853_24365 PF00990 Diguanylate cyclase, GGDEF domain D0853_24375 PF01554 MatE D0853_24380 PF00849 RNA pseudouridylate synthase D0853_24395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_24395 PF03466 LysR substrate binding domain D0853_24410 PF00990 Diguanylate cyclase, GGDEF domain D0853_24410 PF17152 Periplasmic sensor domain D0853_24420 PF00756 Putative esterase D0853_24425 PF08240 Alcohol dehydrogenase GroES-like domain D0853_24425 PF00107 Zinc-binding dehydrogenase D0853_24430 PF00797 N-acetyltransferase D0853_24435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_24435 PF03466 LysR substrate binding domain D0853_24450 PF09339 IclR helix-turn-helix domain D0853_24450 PF01614 Bacterial transcriptional regulator D0853_24460 PF10688 Bacterial inner membrane protein D0853_24465 PF07883 Cupin domain D0853_24480 PF00294 pfkB family carbohydrate kinase D0853_24485 PF01081 KDPG and KHG aldolase D0853_24500 PF13229 Right handed beta helix region D0853_24505 PF00474 Sodium:solute symporter family D0853_24510 PF14583 Oligogalacturonate lyase D0853_24515 PF04954 Siderophore-interacting protein D0853_24515 PF08021 Siderophore-interacting FAD-binding domain D0853_24520 PF01810 LysE type translocator D0853_24525 PF01037 Lrp/AsnC ligand binding domain D0853_24530 PF18416 N-acetylglucosamine binding protein domain 2 D0853_24530 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading D0853_24545 PF13599 Pentapeptide repeats (9 copies) D0853_24550 PF03922 OmpW family D0853_24555 PF13533 Biotin-lipoyl like D0853_24560 PF07690 Major Facilitator Superfamily D0853_24570 PF12706 Beta-lactamase superfamily domain D0853_24580 PF01204 Trehalase D0853_24585 PF01661 Macro domain D0853_24590 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D0853_24595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_24595 PF03466 LysR substrate binding domain D0853_24605 PF03466 LysR substrate binding domain D0853_24605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_24620 PF13419 Haloacid dehalogenase-like hydrolase D0853_24645 PF13556 PucR C-terminal helix-turn-helix domain D0853_24645 PF17853 GGDEF-like domain D0853_24645 PF05651 Putative sugar diacid recognition D0853_24650 PF02447 GntP family permease D0853_24655 PF02595 Glycerate kinase family D0853_24660 PF00392 Bacterial regulatory proteins, gntR family D0853_24660 PF00155 Aminotransferase class I and II D0853_24680 PF00583 Acetyltransferase (GNAT) family D0853_24705 PF03264 NapC/NirT cytochrome c family, N-terminal region D0853_24710 PF00384 Molybdopterin oxidoreductase D0853_24710 PF18364 Molybdopterin oxidoreductase N-terminal domain D0853_24710 PF01568 Molydopterin dinucleotide binding domain D0853_24720 PF02581 Thiamine monophosphate synthase D0853_24725 PF02110 Hydroxyethylthiazole kinase family D0853_24730 PF03070 TENA/THI-4/PQQC family D0853_24735 PF09084 NMT1/THI5 like D0853_24740 PF00528 Binding-protein-dependent transport system inner membrane component D0853_24745 PF00005 ABC transporter D0853_24750 PF08543 Phosphomethylpyrimidine kinase D0853_24760 PF01523 Putative modulator of DNA gyrase D0853_24765 PF01523 Putative modulator of DNA gyrase D0853_24770 PF04013 Putative SAM-dependent RNA methyltransferase D0853_24825 PF10928 Protein of unknown function (DUF2810) D0853_24830 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D0853_24830 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D0853_24840 PF03009 Glycerophosphoryl diester phosphodiesterase family D0853_24850 PF00072 Response regulator receiver domain D0853_24850 PF00486 Transcriptional regulatory protein, C terminal D0853_24855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_24855 PF00512 His Kinase A (phospho-acceptor) domain D0853_24855 PF16750 Sensor domain of 2-component histidine kinase D0853_24855 PF00672 HAMP domain D0853_24860 PF00593 TonB dependent receptor D0853_24860 PF07715 TonB-dependent Receptor Plug Domain D0853_24870 PF01618 MotA/TolQ/ExbB proton channel family D0853_24875 PF01618 MotA/TolQ/ExbB proton channel family D0853_24880 PF02472 Biopolymer transport protein ExbD/TolR D0853_24920 PF01297 Zinc-uptake complex component A periplasmic D0853_24925 PF00005 ABC transporter D0853_24930 PF00950 ABC 3 transport family D0853_24945 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain D0853_24945 PF00326 Prolyl oligopeptidase family D0853_24950 PF07690 Major Facilitator Superfamily D0853_24955 PF00491 Arginase family D0853_24960 PF17810 Arginine decarboxylase helical bundle domain D0853_24960 PF17944 Arginine decarboxylase C-terminal helical extension D0853_24960 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain D0853_24965 PF00753 Metallo-beta-lactamase superfamily D0853_24970 PF08443 RimK-like ATP-grasp domain D0853_24970 PF18030 RimK PreATP-grasp domain D0853_24975 PF08443 RimK-like ATP-grasp domain D0853_24975 PF18030 RimK PreATP-grasp domain D0853_24985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_24985 PF03466 LysR substrate binding domain D0853_25010 PF00232 Glycosyl hydrolase family 1 D0853_25020 PF02743 Cache domain D0853_25020 PF00512 His Kinase A (phospho-acceptor) domain D0853_25020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D0853_25025 PF02954 Bacterial regulatory protein, Fis family D0853_25025 PF00158 Sigma-54 interaction domain D0853_25025 PF00072 Response regulator receiver domain D0853_25030 PF05230 MASE2 domain D0853_25030 PF00990 Diguanylate cyclase, GGDEF domain D0853_25035 PF05525 Branched-chain amino acid transport protein D0853_25060 PF01266 FAD dependent oxidoreductase D0853_25070 PF01212 Beta-eliminating lyase D0853_25090 PF07670 Nucleoside recognition D0853_25090 PF07662 Na+ dependent nucleoside transporter C-terminus D0853_25090 PF01773 Na+ dependent nucleoside transporter N-terminus D0853_25100 PF13532 2OG-Fe(II) oxygenase superfamily D0853_25105 PF05230 MASE2 domain D0853_25105 PF00990 Diguanylate cyclase, GGDEF domain D0853_25110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D0853_25110 PF12729 Four helix bundle sensory module for signal transduction D0853_25110 PF00672 HAMP domain D0853_25125 PF00990 Diguanylate cyclase, GGDEF domain D0853_25130 PF00875 DNA photolyase D0853_25130 PF03441 FAD binding domain of DNA photolyase D0853_25135 PF04244 Deoxyribodipyrimidine photo-lyase-related protein D0853_25140 PF04055 Radical SAM superfamily D0853_25140 PF00919 Uncharacterized protein family UPF0004 D0853_25150 PF01641 SelR domain D0853_25150 PF01625 Peptide methionine sulfoxide reductase D0853_25155 PF02566 OsmC-like protein D0853_25160 PF14602 Hexapeptide repeat of succinyl-transferase D0853_25160 PF12464 Maltose acetyltransferase D0853_25195 PF03466 LysR substrate binding domain D0853_25195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_25200 PF13419 Haloacid dehalogenase-like hydrolase D0853_25215 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) D0853_25220 PF00194 Eukaryotic-type carbonic anhydrase D0853_25225 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) D0853_25230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D0853_25235 PF12704 MacB-like periplasmic core domain D0853_25235 PF02687 FtsX-like permease family D0853_25235 PF00005 ABC transporter D0853_25240 PF02321 Outer membrane efflux protein D0853_25245 PF00657 GDSL-like Lipase/Acylhydrolase D0853_25260 PF03611 PTS system sugar-specific permease component D0853_25270 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D0853_25275 PF00356 Bacterial regulatory proteins, lacI family D0853_25280 PF13419 Haloacid dehalogenase-like hydrolase D0853_25290 PF00266 Aminotransferase class-V D0853_25305 PF00005 ABC transporter D0853_25310 PF00528 Binding-protein-dependent transport system inner membrane component D0853_25315 PF00392 Bacterial regulatory proteins, gntR family D0853_25315 PF07702 UTRA domain D0853_25330 PF04393 Protein of unknown function (DUF535) D0853_25340 PF01266 FAD dependent oxidoreductase D0853_25345 PF00246 Zinc carboxypeptidase D0853_25345 PF18027 Cytosolic carboxypeptidase N-terminal domain D0853_25355 PF01389 OmpA-like transmembrane domain D0853_25355 PF00691 OmpA family D0853_25360 PF03466 LysR substrate binding domain D0853_25360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_25370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_25370 PF03466 LysR substrate binding domain D0853_25380 PF00854 POT family D0853_25385 PF03313 Serine dehydratase alpha chain D0853_25385 PF03315 Serine dehydratase beta chain D0853_25405 PF08264 Anticodon-binding domain of tRNA D0853_25405 PF00133 tRNA synthetases class I (I, L, M and V) D0853_25415 PF01464 Transglycosylase SLT domain D0853_25435 PF00460 Flagella basal body rod protein D0853_25440 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D0853_25440 PF00460 Flagella basal body rod protein D0853_25445 PF13860 FlgD Ig-like domain D0853_25445 PF13861 FlgD Tudor-like domain D0853_25445 PF03963 Flagellar hook capping protein - N-terminal region D0853_25450 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D0853_25450 PF00460 Flagella basal body rod protein D0853_25450 PF07559 Flagellar basal body protein FlaE D0853_25455 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D0853_25455 PF00460 Flagella basal body rod protein D0853_25460 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D0853_25460 PF00460 Flagella basal body rod protein D0853_25465 PF02107 Flagellar L-ring protein D0853_25470 PF02119 Flagellar P-ring protein D0853_25475 PF10135 Rod binding protein D0853_25475 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase D0853_25480 PF00460 Flagella basal body rod protein D0853_25480 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D0853_25485 PF00669 Bacterial flagellin N-terminal helical region D0853_25505 PF01070 FMN-dependent dehydrogenase D0853_25535 PF00581 Rhodanese-like domain D0853_25545 PF00166 Chaperonin 10 Kd subunit D0853_25550 PF00118 TCP-1/cpn60 chaperonin family D0853_25565 PF01810 LysE type translocator D0853_25570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_25570 PF03466 LysR substrate binding domain D0853_25585 PF08359 YsiA-like protein, C-terminal region D0853_25585 PF00440 Bacterial regulatory proteins, tetR family D0853_25595 PF00149 Calcineurin-like phosphoesterase D0853_25595 PF02872 5'-nucleotidase, C-terminal domain D0853_25600 PF03060 Nitronate monooxygenase D0853_25615 PF03466 LysR substrate binding domain D0853_25615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D0853_25625 PF01625 Peptide methionine sulfoxide reductase D0853_25625 PF01641 SelR domain D0853_25630 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D0853_25635 PF00455 DeoR C terminal sensor domain D0853_25635 PF08220 DeoR-like helix-turn-helix domain