locus-tag class description H9J98_00005 PF00308 Bacterial dnaA protein H9J98_00005 PF08299 Bacterial dnaA protein helix-turn-helix H9J98_00005 PF11638 DnaA N-terminal domain H9J98_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain H9J98_00010 PF02767 DNA polymerase III beta subunit, central domain H9J98_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain H9J98_00015 PF02463 RecF/RecN/SMC N terminal domain H9J98_00020 PF01751 Toprim domain H9J98_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_00020 PF18053 DNA gyrase B subunit insert domain H9J98_00020 PF00986 DNA gyrase B subunit, carboxyl terminus H9J98_00020 PF00204 DNA gyrase B H9J98_00030 PF00011 Hsp20/alpha crystallin family H9J98_00035 PF00155 Aminotransferase class I and II H9J98_00040 PF00128 Alpha amylase, catalytic domain H9J98_00045 PF05746 DALR anticodon binding domain H9J98_00045 PF02092 Glycyl-tRNA synthetase beta subunit H9J98_00050 PF02091 Glycyl-tRNA synthetase alpha subunit H9J98_00055 PF01169 Uncharacterized protein family UPF0016 H9J98_00065 PF01206 Sulfurtransferase TusA H9J98_00075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_00075 PF03466 LysR substrate binding domain H9J98_00080 PF08240 Alcohol dehydrogenase GroES-like domain H9J98_00080 PF00107 Zinc-binding dehydrogenase H9J98_00085 PF02803 Thiolase, C-terminal domain H9J98_00085 PF00108 Thiolase, N-terminal domain H9J98_00090 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain H9J98_00090 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain H9J98_00090 PF00378 Enoyl-CoA hydratase/isomerase H9J98_00095 PF01205 Uncharacterized protein family UPF0029 H9J98_00095 PF09186 Domain of unknown function (DUF1949) H9J98_00100 PF02386 Cation transport protein H9J98_00105 PF12724 Flavodoxin domain H9J98_00150 PF02537 CrcB-like protein, Camphor Resistance (CrcB) H9J98_00155 PF01964 Radical SAM ThiC family H9J98_00155 PF13667 ThiC-associated domain H9J98_00160 PF02581 Thiamine monophosphate synthase H9J98_00165 PF00899 ThiF family H9J98_00170 PF02597 ThiS family H9J98_00175 PF05690 Thiazole biosynthesis protein ThiG H9J98_00180 PF04055 Radical SAM superfamily H9J98_00180 PF06968 Biotin and Thiamin Synthesis associated domain H9J98_00190 PF01321 Creatinase/Prolidase N-terminal domain H9J98_00190 PF00557 Metallopeptidase family M24 H9J98_00190 PF01321 Creatinase/Prolidase N-terminal domain H9J98_00190 PF00557 Metallopeptidase family M24 H9J98_00195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_00195 PF03466 LysR substrate binding domain H9J98_00200 PF07690 Major Facilitator Superfamily H9J98_00220 PF05114 Protein of unknown function (DUF692) H9J98_00230 PF00580 UvrD/REP helicase N-terminal domain H9J98_00230 PF13361 UvrD-like helicase C-terminal domain H9J98_00240 PF01810 LysE type translocator H9J98_00250 PF00892 EamA-like transporter family H9J98_00255 PF00271 Helicase conserved C-terminal domain H9J98_00255 PF00270 DEAD/DEAH box helicase H9J98_00255 PF09382 RQC domain H9J98_00255 PF00570 HRDC domain H9J98_00255 PF16124 RecQ zinc-binding H9J98_00265 PF02592 Putative vitamin uptake transporter H9J98_00270 PF02541 Ppx/GppA phosphatase family H9J98_00275 PF00270 DEAD/DEAH box helicase H9J98_00275 PF00271 Helicase conserved C-terminal domain H9J98_00280 PF00085 Thioredoxin H9J98_00285 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain H9J98_00285 PF07498 Rho termination factor, N-terminal domain H9J98_00285 PF07497 Rho termination factor, RNA-binding domain H9J98_00295 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase H9J98_00300 PF00111 2Fe-2S iron-sulfur cluster binding domain H9J98_00305 PF00175 Oxidoreductase NAD-binding domain H9J98_00340 PF07219 HemY protein N-terminus H9J98_00345 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase H9J98_00350 PF02602 Uroporphyrinogen-III synthase HemD H9J98_00355 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain H9J98_00355 PF03900 Porphobilinogen deaminase, C-terminal domain H9J98_00360 PF12633 Adenylate cyclase NT domain H9J98_00360 PF01295 Adenylate cyclase, class-I H9J98_00365 PF01491 Frataxin-like domain H9J98_00375 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain H9J98_00375 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain H9J98_00380 PF01678 Diaminopimelate epimerase H9J98_00390 PF02899 Phage integrase, N-terminal SAM-like domain H9J98_00390 PF00589 Phage integrase family H9J98_00395 PF13419 Haloacid dehalogenase-like hydrolase H9J98_00400 PF00563 EAL domain H9J98_00400 PF08495 FIST N domain H9J98_00400 PF10442 FIST C domain H9J98_00400 PF00990 Diguanylate cyclase, GGDEF domain H9J98_00405 PF03942 DTW domain H9J98_00425 PF12146 Serine aminopeptidase, S33 H9J98_00430 PF01810 LysE type translocator H9J98_00435 PF00563 EAL domain H9J98_00435 PF08668 HDOD domain H9J98_00440 PF01022 Bacterial regulatory protein, arsR family H9J98_00445 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain H9J98_00445 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain H9J98_00495 PF01914 MarC family integral membrane protein H9J98_00510 PF02881 SRP54-type protein, helical bundle domain H9J98_00510 PF00448 SRP54-type protein, GTPase domain H9J98_00510 PF02881 SRP54-type protein, helical bundle domain H9J98_00510 PF00448 SRP54-type protein, GTPase domain H9J98_00515 PF00005 ABC transporter H9J98_00520 PF18075 FtsX extracellular domain H9J98_00525 PF04542 Sigma-70 region 2 H9J98_00525 PF00140 Sigma-70 factor, region 1.2 H9J98_00525 PF04545 Sigma-70, region 4 H9J98_00530 PF00581 Rhodanese-like domain H9J98_00535 PF01694 Rhomboid family H9J98_00535 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease H9J98_00540 PF03748 Flagellar basal body-associated protein FliL H9J98_00545 PF04345 Chorismate lyase H9J98_00550 PF01040 UbiA prenyltransferase family H9J98_00555 PF01553 Acyltransferase H9J98_00560 PF00717 Peptidase S24-like H9J98_00560 PF01726 LexA DNA binding domain H9J98_00565 PF04072 Leucine carboxyl methyltransferase H9J98_00570 PF01554 MatE H9J98_00575 PF07992 Pyridine nucleotide-disulphide oxidoreductase H9J98_00575 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain H9J98_00580 PF00440 Bacterial regulatory proteins, tetR family H9J98_00605 PF01420 Type I restriction modification DNA specificity domain H9J98_00610 PF12161 HsdM N-terminal domain H9J98_00610 PF02384 N-6 DNA Methylase H9J98_00620 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) H9J98_00620 PF04851 Type III restriction enzyme, res subunit H9J98_00620 PF00271 Helicase conserved C-terminal domain H9J98_00620 PF08463 EcoEI R protein C-terminal H9J98_00635 PF04002 RadC-like JAB domain H9J98_00650 PF06803 Protein of unknown function (DUF1232) H9J98_00690 PF05958 tRNA (Uracil-5-)-methyltransferase H9J98_00695 PF00593 TonB dependent receptor H9J98_00695 PF07715 TonB-dependent Receptor Plug Domain H9J98_00705 PF01177 Asp/Glu/Hydantoin racemase H9J98_00760 PF13091 PLD-like domain H9J98_00770 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain H9J98_00770 PF01565 FAD binding domain H9J98_00775 PF08279 HTH domain H9J98_00775 PF03099 Biotin/lipoate A/B protein ligase family H9J98_00775 PF02237 Biotin protein ligase C terminal domain H9J98_00780 PF00485 Phosphoribulokinase / Uridine kinase family H9J98_00805 PF03144 Elongation factor Tu domain 2 H9J98_00805 PF03143 Elongation factor Tu C-terminal domain H9J98_00805 PF00009 Elongation factor Tu GTP binding domain H9J98_00810 PF00584 SecE/Sec61-gamma subunits of protein translocation complex H9J98_00815 PF02357 Transcription termination factor nusG H9J98_00815 PF00467 KOW motif H9J98_00820 PF03946 Ribosomal protein L11, N-terminal domain H9J98_00820 PF00298 Ribosomal protein L11, RNA binding domain H9J98_00825 PF00687 Ribosomal protein L1p/L10e family H9J98_00830 PF00466 Ribosomal protein L10 H9J98_00835 PF00542 Ribosomal protein L7/L12 C-terminal domain H9J98_00835 PF16320 Ribosomal protein L7/L12 dimerisation domain H9J98_00840 PF04565 RNA polymerase Rpb2, domain 3 H9J98_00840 PF10385 RNA polymerase beta subunit external 1 domain H9J98_00840 PF00562 RNA polymerase Rpb2, domain 6 H9J98_00840 PF04560 RNA polymerase Rpb2, domain 7 H9J98_00840 PF04561 RNA polymerase Rpb2, domain 2 H9J98_00840 PF04563 RNA polymerase beta subunit H9J98_00845 PF04997 RNA polymerase Rpb1, domain 1 H9J98_00845 PF00623 RNA polymerase Rpb1, domain 2 H9J98_00845 PF04983 RNA polymerase Rpb1, domain 3 H9J98_00845 PF05000 RNA polymerase Rpb1, domain 4 H9J98_00845 PF04998 RNA polymerase Rpb1, domain 5 H9J98_00850 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ H9J98_00855 PF00293 NUDIX domain H9J98_00855 PF09297 NADH pyrophosphatase zinc ribbon domain H9J98_00870 PF01208 Uroporphyrinogen decarboxylase (URO-D) H9J98_00875 PF03167 Uracil DNA glycosylase superfamily H9J98_00880 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain H9J98_00885 PF04222 Protein of unknown function (DUF416) H9J98_00890 PF01595 Cyclin M transmembrane N-terminal domain H9J98_00890 PF00571 CBS domain H9J98_00895 PF00216 Bacterial DNA-binding protein H9J98_00905 PF02844 Phosphoribosylglycinamide synthetase, N domain H9J98_00905 PF02843 Phosphoribosylglycinamide synthetase, C domain H9J98_00905 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain H9J98_00910 PF02142 MGS-like domain H9J98_00910 PF01808 AICARFT/IMPCHase bienzyme H9J98_00915 PF13411 MerR HTH family regulatory protein H9J98_00920 PF00486 Transcriptional regulatory protein, C terminal H9J98_00920 PF18500 CadC C-terminal domain 1 H9J98_00925 PF13520 Amino acid permease H9J98_00930 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain H9J98_00930 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain H9J98_00930 PF01276 Orn/Lys/Arg decarboxylase, major domain H9J98_00995 PF00990 Diguanylate cyclase, GGDEF domain H9J98_00995 PF05230 MASE2 domain H9J98_01000 PF12848 ABC transporter H9J98_01000 PF00005 ABC transporter H9J98_01005 PF07690 Major Facilitator Superfamily H9J98_01010 PF02954 Bacterial regulatory protein, Fis family H9J98_01015 PF01207 Dihydrouridine synthase (Dus) H9J98_01025 PF00289 Biotin carboxylase, N-terminal domain H9J98_01025 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain H9J98_01025 PF02785 Biotin carboxylase C-terminal domain H9J98_01030 PF00364 Biotin-requiring enzyme H9J98_01035 PF01220 Dehydroquinase class II H9J98_01040 PF00501 AMP-binding enzyme H9J98_01040 PF13193 AMP-binding enzyme C-terminal domain H9J98_01040 PF16177 Acetyl-coenzyme A synthetase N-terminus H9J98_01055 PF12832 MFS_1 like family H9J98_01060 PF00672 HAMP domain H9J98_01060 PF00512 His Kinase A (phospho-acceptor) domain H9J98_01060 PF01627 Hpt domain H9J98_01060 PF00072 Response regulator receiver domain H9J98_01060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_01065 PF10415 Fumarase C C-terminus H9J98_01065 PF00206 Lyase H9J98_01080 PF00474 Sodium:solute symporter family H9J98_01090 PF03471 Transporter associated domain H9J98_01090 PF02080 TrkA-C domain H9J98_01090 PF00999 Sodium/hydrogen exchanger family H9J98_01095 PF00196 Bacterial regulatory proteins, luxR family H9J98_01095 PF00072 Response regulator receiver domain H9J98_01100 PF11412 Disulphide bond corrector protein DsbC H9J98_01100 PF02683 Cytochrome C biogenesis protein transmembrane region H9J98_01105 PF03605 Anaerobic c4-dicarboxylate membrane transporter H9J98_01110 PF10415 Fumarase C C-terminus H9J98_01110 PF00206 Lyase H9J98_01115 PF04186 FxsA cytoplasmic membrane protein H9J98_01120 PF00588 SpoU rRNA Methylase family H9J98_01125 PF02777 Iron/manganese superoxide dismutases, C-terminal domain H9J98_01125 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain H9J98_01130 PF00512 His Kinase A (phospho-acceptor) domain H9J98_01130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_01130 PF00672 HAMP domain H9J98_01130 PF16527 Two-component sensor protein CpxA, periplasmic domain H9J98_01135 PF00072 Response regulator receiver domain H9J98_01135 PF00486 Transcriptional regulatory protein, C terminal H9J98_01140 PF07813 LTXXQ motif family protein H9J98_01145 PF01545 Cation efflux family H9J98_01145 PF16916 Dimerisation domain of Zinc Transporter H9J98_01150 PF00365 Phosphofructokinase H9J98_01155 PF01554 MatE H9J98_01160 PF00166 Chaperonin 10 Kd subunit H9J98_01165 PF00118 TCP-1/cpn60 chaperonin family H9J98_01175 PF02308 MgtC family H9J98_01180 PF01168 Alanine racemase, N-terminal domain H9J98_01180 PF00842 Alanine racemase, C-terminal domain H9J98_01185 PF04055 Radical SAM superfamily H9J98_01190 PF01132 Elongation factor P (EF-P) OB domain H9J98_01190 PF09285 Elongation factor P, C-terminal H9J98_01190 PF08207 Elongation factor P (EF-P) KOW-like domain H9J98_01200 PF02313 Fumarate reductase subunit D H9J98_01205 PF02300 Fumarate reductase subunit C H9J98_01210 PF13085 2Fe-2S iron-sulfur cluster binding domain H9J98_01210 PF13183 4Fe-4S dicluster domain H9J98_01215 PF00890 FAD binding domain H9J98_01215 PF02910 Fumarate reductase flavoprotein C-term H9J98_01220 PF00152 tRNA synthetases class II (D, K and N) H9J98_01230 PF08360 QacR-like protein, C-terminal region H9J98_01230 PF00440 Bacterial regulatory proteins, tetR family H9J98_01240 PF01551 Peptidase family M23 H9J98_01245 PF00132 Bacterial transferase hexapeptide (six repeats) H9J98_01245 PF06426 Serine acetyltransferase, N-terminal H9J98_01250 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus H9J98_01250 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus H9J98_01255 PF02556 Preprotein translocase subunit SecB H9J98_01260 PF00581 Rhodanese-like domain H9J98_01265 PF06415 BPG-independent PGAM N-terminus (iPGM_N) H9J98_01265 PF01676 Metalloenzyme superfamily H9J98_01275 PF00672 HAMP domain H9J98_01275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9J98_01280 PF00939 Sodium:sulfate symporter transmembrane region H9J98_01285 PF02666 Phosphatidylserine decarboxylase H9J98_01290 PF03193 RsgA GTPase H9J98_01295 PF00929 Exonuclease H9J98_01365 PF08331 Domain of unknown function (DUF1730) H9J98_01370 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE H9J98_01375 PF01520 N-acetylmuramoyl-L-alanine amidase H9J98_01380 PF08676 MutL C terminal dimerisation domain H9J98_01380 PF01119 DNA mismatch repair protein, C-terminal domain H9J98_01390 PF17209 Hfq protein H9J98_01395 PF16360 GTP-binding GTPase Middle Region H9J98_01395 PF13167 GTP-binding GTPase N-terminal H9J98_01395 PF01926 50S ribosome-binding GTPase H9J98_01400 PF12221 Bacterial membrane protein N terminal H9J98_01400 PF01145 SPFH domain / Band 7 family H9J98_01405 PF01145 SPFH domain / Band 7 family H9J98_01410 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) H9J98_01415 PF00709 Adenylosuccinate synthetase H9J98_01420 PF08238 Sel1 repeat H9J98_01425 PF00970 Oxidoreductase FAD-binding domain H9J98_01425 PF00042 Globin H9J98_01425 PF00175 Oxidoreductase NAD-binding domain H9J98_01430 PF02082 Transcriptional regulator H9J98_01435 PF00575 S1 RNA binding domain H9J98_01435 PF17876 Cold shock domain H9J98_01435 PF08206 Ribonuclease B OB domain H9J98_01435 PF00773 RNB domain H9J98_01435 PF08461 Ribonuclease R winged-helix domain H9J98_01440 PF00588 SpoU rRNA Methylase family H9J98_01440 PF08032 RNA 2'-O ribose methyltransferase substrate binding H9J98_01445 PF13419 Haloacid dehalogenase-like hydrolase H9J98_01450 PF00579 tRNA synthetases class I (W and Y) H9J98_01465 PF00117 Glutamine amidotransferase class-I H9J98_01470 PF00202 Aminotransferase class-III H9J98_01475 PF04958 Arginine N-succinyltransferase beta subunit H9J98_01480 PF00171 Aldehyde dehydrogenase family H9J98_01490 PF00027 Cyclic nucleotide-binding domain H9J98_01490 PF13545 Crp-like helix-turn-helix domain H9J98_01495 PF00485 Phosphoribulokinase / Uridine kinase family H9J98_01500 PF06794 Uncharacterised protein family (UPF0270) H9J98_01505 PF00561 alpha/beta hydrolase fold H9J98_01515 PF00005 ABC transporter H9J98_01515 PF12848 ABC transporter H9J98_01520 PF02525 Flavodoxin-like fold H9J98_01525 PF00999 Sodium/hydrogen exchanger family H9J98_01525 PF02254 TrkA-N domain H9J98_01535 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase H9J98_01540 PF01112 Asparaginase H9J98_01545 PF04102 SlyX H9J98_01555 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase H9J98_01555 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase H9J98_01560 PF13309 HTH domain H9J98_01560 PF08348 YheO-like PAS domain H9J98_01565 PF02635 DsrE/DsrF-like family H9J98_01570 PF02635 DsrE/DsrF-like family H9J98_01575 PF04077 DsrH like protein H9J98_01580 PF00164 Ribosomal protein S12/S23 H9J98_01585 PF00177 Ribosomal protein S7p/S5e H9J98_01590 PF14492 Elongation Factor G, domain II H9J98_01590 PF03144 Elongation factor Tu domain 2 H9J98_01590 PF00009 Elongation factor Tu GTP binding domain H9J98_01590 PF03764 Elongation factor G, domain IV H9J98_01590 PF00679 Elongation factor G C-terminus H9J98_01595 PF03144 Elongation factor Tu domain 2 H9J98_01595 PF00009 Elongation factor Tu GTP binding domain H9J98_01595 PF03143 Elongation factor Tu C-terminal domain H9J98_01600 PF04324 BFD-like [2Fe-2S] binding domain H9J98_01605 PF00210 Ferritin-like domain H9J98_01610 PF03949 Malic enzyme, NAD binding domain H9J98_01610 PF00390 Malic enzyme, N-terminal domain H9J98_01615 PF01340 Met Apo-repressor, MetJ H9J98_01620 PF01053 Cys/Met metabolism PLP-dependent enzyme H9J98_01625 PF03447 Homoserine dehydrogenase, NAD binding domain H9J98_01625 PF00696 Amino acid kinase family H9J98_01625 PF00742 Homoserine dehydrogenase H9J98_01630 PF02219 Methylenetetrahydrofolate reductase H9J98_01640 PF00311 Phosphoenolpyruvate carboxylase H9J98_01645 PF01546 Peptidase family M20/M25/M40 H9J98_01645 PF07687 Peptidase dimerisation domain H9J98_01650 PF02774 Semialdehyde dehydrogenase, dimerisation domain H9J98_01650 PF01118 Semialdehyde dehydrogenase, NAD binding domain H9J98_01655 PF00696 Amino acid kinase family H9J98_01660 PF00764 Arginosuccinate synthase H9J98_01665 PF14698 Argininosuccinate lyase C-terminal H9J98_01665 PF00583 Acetyltransferase (GNAT) family H9J98_01665 PF00206 Lyase H9J98_01675 PF08534 Redoxin H9J98_01675 PF00462 Glutaredoxin H9J98_01680 PF03466 LysR substrate binding domain H9J98_01680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_01685 PF00905 Penicillin binding protein transpeptidase domain H9J98_01685 PF00912 Transglycosylase H9J98_01685 PF17092 Penicillin-binding protein OB-like domain H9J98_01695 PF05137 Fimbrial assembly protein (PilN) H9J98_01705 PF04351 Pilus assembly protein, PilP H9J98_01710 PF07660 Secretin and TonB N terminus short domain H9J98_01710 PF03958 Bacterial type II/III secretion system short domain H9J98_01710 PF00263 Bacterial type II and III secretion system protein H9J98_01710 PF11741 AMIN domain H9J98_01715 PF01202 Shikimate kinase H9J98_01720 PF01761 3-dehydroquinate synthase H9J98_01730 PF02086 D12 class N6 adenine-specific DNA methyltransferase H9J98_01735 PF00834 Ribulose-phosphate 3 epimerase family H9J98_01740 PF01250 Ribosomal protein S6 H9J98_01745 PF00436 Single-strand binding protein family H9J98_01750 PF01084 Ribosomal protein S18 H9J98_01755 PF01281 Ribosomal protein L9, N-terminal domain H9J98_01755 PF03948 Ribosomal protein L9, C-terminal domain H9J98_01765 PF03796 DnaB-like helicase C terminal domain H9J98_01765 PF00772 DnaB-like helicase N terminal domain H9J98_01770 PF01168 Alanine racemase, N-terminal domain H9J98_01770 PF00842 Alanine racemase, C-terminal domain H9J98_01780 PF01894 Uncharacterised protein family UPF0047 H9J98_01785 PF00342 Phosphoglucose isomerase H9J98_01795 PF01475 Ferric uptake regulator family H9J98_01800 PF01207 Dihydrouridine synthase (Dus) H9J98_01820 PF00667 FAD binding domain H9J98_01820 PF00258 Flavodoxin H9J98_01820 PF00175 Oxidoreductase NAD-binding domain H9J98_01825 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain H9J98_01825 PF01077 Nitrite and sulphite reductase 4Fe-4S domain H9J98_01830 PF01507 Phosphoadenosine phosphosulfate reductase family H9J98_01900 PF00999 Sodium/hydrogen exchanger family H9J98_01905 PF02310 B12 binding domain H9J98_01905 PF02607 B12 binding domain H9J98_01905 PF00809 Pterin binding enzyme H9J98_01905 PF02574 Homocysteine S-methyltransferase H9J98_01905 PF02965 Vitamin B12 dependent methionine synthase, activation domain H9J98_01910 PF00696 Amino acid kinase family H9J98_01910 PF01842 ACT domain H9J98_01915 PF00266 Aminotransferase class-V H9J98_01930 PF17755 UvrA DNA-binding domain H9J98_01930 PF00005 ABC transporter H9J98_01930 PF17760 UvrA interaction domain H9J98_01935 PF00483 Nucleotidyl transferase H9J98_01940 PF00196 Bacterial regulatory proteins, luxR family H9J98_01945 PF00436 Single-strand binding protein family H9J98_01950 PF00563 EAL domain H9J98_01950 PF00990 Diguanylate cyclase, GGDEF domain H9J98_01950 PF17157 Gammaproteobacterial periplasmic sensor domain H9J98_01970 PF07660 Secretin and TonB N terminus short domain H9J98_01970 PF00263 Bacterial type II and III secretion system protein H9J98_01970 PF11741 AMIN domain H9J98_01970 PF03958 Bacterial type II/III secretion system short domain H9J98_01975 PF01471 Putative peptidoglycan binding domain H9J98_01975 PF13401 AAA domain H9J98_01985 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain H9J98_01985 PF00437 Type II/IV secretion system protein H9J98_01990 PF00482 Type II secretion system (T2SS), protein F H9J98_02000 PF07963 Prokaryotic N-terminal methylation motif H9J98_02000 PF00114 Pilin (bacterial filament) H9J98_02040 PF04085 rod shape-determining protein MreC H9J98_02045 PF04093 rod shape-determining protein MreD H9J98_02050 PF02545 Maf-like protein H9J98_02055 PF10150 Ribonuclease E/G family H9J98_02055 PF00575 S1 RNA binding domain H9J98_02060 PF13116 Protein of unknown function H9J98_02060 PF13502 AsmA-like C-terminal region H9J98_02065 PF00795 Carbon-nitrogen hydrolase H9J98_02070 PF01523 Putative modulator of DNA gyrase H9J98_02075 PF02562 PhoH-like protein H9J98_02075 PF13638 PIN domain H9J98_02080 PF18339 RapA N-terminal Tudor like domain 1 H9J98_02080 PF00271 Helicase conserved C-terminal domain H9J98_02080 PF12137 RNA polymerase recycling family C-terminal H9J98_02080 PF00176 SNF2 family N-terminal domain H9J98_02080 PF18337 RapA N-terminal Tudor like domain H9J98_02090 PF00849 RNA pseudouridylate synthase H9J98_02095 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain H9J98_02095 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain H9J98_02100 PF04751 Protein of unknown function (DUF615) H9J98_02105 PF01523 Putative modulator of DNA gyrase H9J98_02110 PF03448 MgtE intracellular N domain H9J98_02110 PF01769 Divalent cation transporter H9J98_02110 PF00571 CBS domain H9J98_02115 PF00381 PTS HPr component phosphorylation site H9J98_02120 PF03668 P-loop ATPase protein family H9J98_02125 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 H9J98_02130 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein H9J98_02135 PF04552 Sigma-54, DNA binding domain H9J98_02135 PF00309 Sigma-54 factor, Activator interacting domain (AID) H9J98_02135 PF04963 Sigma-54 factor, core binding domain H9J98_02140 PF12399 Branched-chain amino acid ATP-binding cassette transporter H9J98_02140 PF00005 ABC transporter H9J98_02145 PF03968 OstA-like protein H9J98_02155 PF01380 SIS domain H9J98_02155 PF00571 CBS domain H9J98_02160 PF01699 Sodium/calcium exchanger protein H9J98_02165 PF00005 ABC transporter H9J98_02170 PF02405 Permease MlaE H9J98_02175 PF02470 MlaD protein H9J98_02180 PF05494 MlaC protein H9J98_02190 PF01722 BolA-like protein H9J98_02195 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) H9J98_02200 PF01553 Acyltransferase H9J98_02205 PF01042 Endoribonuclease L-PSP H9J98_02210 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain H9J98_02210 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain H9J98_02215 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain H9J98_02215 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain H9J98_02225 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain H9J98_02225 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain H9J98_02235 PF06877 Regulator of ribonuclease activity B H9J98_02265 PF00583 Acetyltransferase (GNAT) family H9J98_02275 PF08264 Anticodon-binding domain of tRNA H9J98_02275 PF00133 tRNA synthetases class I (I, L, M and V) H9J98_02275 PF10458 Valyl tRNA synthetase tRNA binding arm H9J98_02280 PF04364 DNA polymerase III chi subunit, HolC H9J98_02285 PF00883 Cytosol aminopeptidase family, catalytic domain H9J98_02285 PF02789 Cytosol aminopeptidase family, N-terminal domain H9J98_02290 PF03739 Lipopolysaccharide export system permease LptF/LptG H9J98_02295 PF03739 Lipopolysaccharide export system permease LptF/LptG H9J98_02305 PF10011 Predicted membrane protein (DUF2254) H9J98_02310 PF00106 short chain dehydrogenase H9J98_02405 PF01555 DNA methylase H9J98_02440 PF01522 Polysaccharide deacetylase H9J98_02445 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit H9J98_02450 PF02378 Phosphotransferase system, EIIC H9J98_02455 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit H9J98_02460 PF11975 Family 4 glycosyl hydrolase C-terminal domain H9J98_02460 PF02056 Family 4 glycosyl hydrolase H9J98_02465 PF04794 YdjC-like protein H9J98_02470 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family H9J98_02470 PF00356 Bacterial regulatory proteins, lacI family H9J98_02475 PF00072 Response regulator receiver domain H9J98_02520 PF00171 Aldehyde dehydrogenase family H9J98_02550 PF17200 Single Cache domain 2 H9J98_02550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9J98_02550 PF00672 HAMP domain H9J98_02590 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain H9J98_02590 PF01464 Transglycosylase SLT domain H9J98_02595 PF04362 Bacterial Fe(2+) trafficking H9J98_02600 PF00633 Helix-hairpin-helix motif H9J98_02600 PF00730 HhH-GPD superfamily base excision DNA repair protein H9J98_02600 PF14815 NUDIX domain H9J98_02605 PF02390 Putative methyltransferase H9J98_02610 PF02086 D12 class N6 adenine-specific DNA methyltransferase H9J98_02615 PF04960 Glutaminase H9J98_02620 PF06969 HemN C-terminal domain H9J98_02620 PF04055 Radical SAM superfamily H9J98_02625 PF01725 Ham1 family H9J98_02635 PF02594 Uncharacterised ACR, YggU family COG1872 H9J98_02640 PF02325 YGGT family H9J98_02645 PF03807 NADP oxidoreductase coenzyme F420-dependent H9J98_02645 PF14748 Pyrroline-5-carboxylate reductase dimerisation H9J98_02650 PF01168 Alanine racemase, N-terminal domain H9J98_02655 PF00437 Type II/IV secretion system protein H9J98_02660 PF00437 Type II/IV secretion system protein H9J98_02665 PF03652 Holliday junction resolvase H9J98_02670 PF02622 Uncharacterized ACR, COG1678 H9J98_02675 PF02951 Prokaryotic glutathione synthetase, N-terminal domain H9J98_02675 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain H9J98_02680 PF04452 RNA methyltransferase H9J98_02685 PF04231 Endonuclease I H9J98_02690 PF17283 SprT-like zinc ribbon domain H9J98_02690 PF10263 SprT-like family H9J98_02700 PF02772 S-adenosylmethionine synthetase, central domain H9J98_02700 PF02773 S-adenosylmethionine synthetase, C-terminal domain H9J98_02700 PF00438 S-adenosylmethionine synthetase, N-terminal domain H9J98_02705 PF00456 Transketolase, thiamine diphosphate binding domain H9J98_02705 PF02780 Transketolase, C-terminal domain H9J98_02705 PF02779 Transketolase, pyrimidine binding domain H9J98_02710 PF03466 LysR substrate binding domain H9J98_02710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_02715 PF00593 TonB dependent receptor H9J98_02715 PF07715 TonB-dependent Receptor Plug Domain H9J98_02720 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain H9J98_02720 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain H9J98_02725 PF00162 Phosphoglycerate kinase H9J98_02730 PF01116 Fructose-bisphosphate aldolase class-II H9J98_02735 PF05552 Conserved TM helix H9J98_02735 PF00924 Mechanosensitive ion channel H9J98_02745 PF04073 Aminoacyl-tRNA editing domain H9J98_02750 PF01810 LysE type translocator H9J98_02755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_02755 PF03466 LysR substrate binding domain H9J98_02760 PF04402 Protein of unknown function (DUF541) H9J98_02765 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain H9J98_02765 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain H9J98_02765 PF01842 ACT domain H9J98_02770 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) H9J98_02775 PF01812 5-formyltetrahydrofolate cyclo-ligase family H9J98_02785 PF05164 Cell division protein ZapA H9J98_02790 PF03695 Uncharacterised protein family (UPF0149) H9J98_02795 PF01494 FAD binding domain H9J98_02800 PF01494 FAD binding domain H9J98_02815 PF01571 Aminomethyltransferase folate-binding domain H9J98_02820 PF03937 Flavinator of succinate dehydrogenase H9J98_02825 PF02910 Fumarate reductase flavoprotein C-term H9J98_02825 PF00890 FAD binding domain H9J98_02830 PF04542 Sigma-70 region 2 H9J98_02830 PF08281 Sigma-70, region 4 H9J98_02835 PF03873 Anti sigma-E protein RseA, C-terminal domain H9J98_02835 PF03872 Anti sigma-E protein RseA, N-terminal domain H9J98_02840 PF17188 MucB/RseB C-terminal domain H9J98_02840 PF03888 MucB/RseB N-terminal domain H9J98_02850 PF00679 Elongation factor G C-terminus H9J98_02850 PF00009 Elongation factor Tu GTP binding domain H9J98_02850 PF03144 Elongation factor Tu domain 2 H9J98_02850 PF06421 GTP-binding protein LepA C-terminus H9J98_02855 PF10502 Signal peptidase, peptidase S26 H9J98_02860 PF00035 Double-stranded RNA binding motif H9J98_02860 PF14622 Ribonuclease-III-like H9J98_02865 PF07650 KH domain H9J98_02865 PF01926 50S ribosome-binding GTPase H9J98_02870 PF11967 Recombination protein O N terminal H9J98_02870 PF02565 Recombination protein O C terminal H9J98_02875 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ H9J98_02880 PF01648 4'-phosphopantetheinyl transferase superfamily H9J98_02885 PF00672 HAMP domain H9J98_02885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_02885 PF00512 His Kinase A (phospho-acceptor) domain H9J98_02885 PF01627 Hpt domain H9J98_02885 PF00072 Response regulator receiver domain H9J98_02885 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) H9J98_02890 PF01938 TRAM domain H9J98_02890 PF05958 tRNA (Uracil-5-)-methyltransferase H9J98_02895 PF13291 ACT domain H9J98_02895 PF04607 Region found in RelA / SpoT proteins H9J98_02895 PF02824 TGS domain H9J98_02900 PF03819 MazG nucleotide pyrophosphohydrolase domain H9J98_02905 PF06418 CTP synthase N-terminus H9J98_02905 PF00117 Glutamine amidotransferase class-I H9J98_02910 PF00113 Enolase, C-terminal TIM barrel domain H9J98_02910 PF03952 Enolase, N-terminal domain H9J98_02915 PF04977 Septum formation initiator H9J98_02920 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase H9J98_02925 PF02542 YgbB family H9J98_02930 PF01142 tRNA pseudouridine synthase D (TruD) H9J98_02935 PF01975 Survival protein SurE H9J98_02945 PF01476 LysM domain H9J98_02945 PF01551 Peptidase family M23 H9J98_02950 PF04542 Sigma-70 region 2 H9J98_02950 PF04545 Sigma-70, region 4 H9J98_02950 PF04539 Sigma-70 region 3 H9J98_02950 PF00140 Sigma-70 factor, region 1.2 H9J98_02955 PF05188 MutS domain II H9J98_02955 PF05192 MutS domain III H9J98_02955 PF05190 MutS family domain IV H9J98_02955 PF00488 MutS domain V H9J98_02955 PF01624 MutS domain I H9J98_02960 PF02464 Competence-damaged protein H9J98_02965 PF00154 recA bacterial DNA recombination protein H9J98_02970 PF02631 RecX family H9J98_02975 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain H9J98_02975 PF02272 DHHA1 domain H9J98_02975 PF01411 tRNA synthetases class II (A) H9J98_02980 PF13840 ACT domain H9J98_02980 PF01842 ACT domain H9J98_02980 PF00696 Amino acid kinase family H9J98_02985 PF02599 Global regulator protein family H9J98_03040 PF04277 Oxaloacetate decarboxylase, gamma chain H9J98_03045 PF00364 Biotin-requiring enzyme H9J98_03045 PF00682 HMGL-like H9J98_03045 PF02436 Conserved carboxylase domain H9J98_03050 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit H9J98_03055 PF00107 Zinc-binding dehydrogenase H9J98_03055 PF08240 Alcohol dehydrogenase GroES-like domain H9J98_03060 PF09335 SNARE associated Golgi protein H9J98_03065 PF00675 Insulinase (Peptidase family M16) H9J98_03065 PF05193 Peptidase M16 inactive domain H9J98_03070 PF04262 Glutamate-cysteine ligase H9J98_03080 PF02664 S-Ribosylhomocysteinase (LuxS) H9J98_03085 PF00571 CBS domain H9J98_03085 PF03471 Transporter associated domain H9J98_03085 PF01595 Cyclin M transmembrane N-terminal domain H9J98_03090 PF01578 Cytochrome C assembly protein H9J98_03095 PF02978 Signal peptide binding domain H9J98_03095 PF00448 SRP54-type protein, GTPase domain H9J98_03095 PF02881 SRP54-type protein, helical bundle domain H9J98_03100 PF00886 Ribosomal protein S16 H9J98_03105 PF05239 PRC-barrel domain H9J98_03105 PF01782 RimM N-terminal domain H9J98_03110 PF01746 tRNA (Guanine-1)-methyltransferase H9J98_03115 PF01245 Ribosomal protein L19 H9J98_03120 PF03884 DNA gyrase inhibitor YacG H9J98_03125 PF07072 Cell division protein H9J98_03130 PF01121 Dephospho-CoA kinase H9J98_03135 PF06750 Bacterial Peptidase A24 N-terminal domain H9J98_03135 PF01478 Type IV leader peptidase family H9J98_03140 PF00482 Type II secretion system (T2SS), protein F H9J98_03145 PF00437 Type II/IV secretion system protein H9J98_03145 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain H9J98_03150 PF07963 Prokaryotic N-terminal methylation motif H9J98_03150 PF00114 Pilin (bacterial filament) H9J98_03155 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain H9J98_03155 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain H9J98_03160 PF01510 N-acetylmuramoyl-L-alanine amidase H9J98_03165 PF00392 Bacterial regulatory proteins, gntR family H9J98_03165 PF07729 FCD domain H9J98_03170 PF00456 Transketolase, thiamine diphosphate binding domain H9J98_03170 PF17831 Pyruvate dehydrogenase E1 component middle domain H9J98_03175 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) H9J98_03175 PF00364 Biotin-requiring enzyme H9J98_03175 PF02817 e3 binding domain H9J98_03180 PF07992 Pyridine nucleotide-disulphide oxidoreductase H9J98_03180 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain H9J98_03185 PF00440 Bacterial regulatory proteins, tetR family H9J98_03190 PF00156 Phosphoribosyl transferase domain H9J98_03195 PF00484 Carbonic anhydrase H9J98_03200 PF00916 Sulfate permease family H9J98_03200 PF01740 STAS domain H9J98_03205 PF00005 ABC transporter H9J98_03210 PF01061 ABC-2 type transporter H9J98_03215 PF03279 Bacterial lipid A biosynthesis acyltransferase H9J98_03220 PF02569 Pantoate-beta-alanine ligase H9J98_03225 PF02548 Ketopantoate hydroxymethyltransferase H9J98_03230 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) H9J98_03235 PF12627 Probable RNA and SrmB- binding site of polymerase A H9J98_03235 PF01743 Poly A polymerase head domain H9J98_03235 PF12626 Polymerase A arginine-rich C-terminus H9J98_03240 PF00749 tRNA synthetases class I (E and Q), catalytic domain H9J98_03245 PF01258 Prokaryotic dksA/traR C4-type zinc finger H9J98_03250 PF17746 SfsA N-terminal OB domain H9J98_03250 PF03749 Sugar fermentation stimulation protein RE domain H9J98_03255 PF00271 Helicase conserved C-terminal domain H9J98_03255 PF00270 DEAD/DEAH box helicase H9J98_03255 PF08482 ATP-dependent helicase C-terminal H9J98_03255 PF04408 Helicase associated domain (HA2) H9J98_03305 PF14814 Bifunctional transglycosylase second domain H9J98_03305 PF00905 Penicillin binding protein transpeptidase domain H9J98_03305 PF00912 Transglycosylase H9J98_03310 PF01734 Patatin-like phospholipase H9J98_03315 PF11791 Aconitate B N-terminal domain H9J98_03315 PF06434 Aconitate hydratase 2 N-terminus H9J98_03315 PF00330 Aconitase family (aconitate hydratase) H9J98_03320 PF06062 Uncharacterised protein family (UPF0231) H9J98_03325 PF00543 Nitrogen regulatory protein P-II H9J98_03330 PF00909 Ammonium Transporter Family H9J98_03335 PF13416 Bacterial extracellular solute-binding protein H9J98_03345 PF08402 TOBE domain H9J98_03345 PF00005 ABC transporter H9J98_03350 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I H9J98_03350 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II H9J98_03350 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III H9J98_03350 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain H9J98_03355 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain H9J98_03355 PF06165 Glycosyltransferase family 36 H9J98_03360 PF02838 Glycosyl hydrolase family 20, domain 2 H9J98_03360 PF00728 Glycosyl hydrolase family 20, catalytic domain H9J98_03365 PF01869 BadF/BadG/BcrA/BcrD ATPase family H9J98_03375 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H9J98_03375 PF00005 ABC transporter H9J98_03380 PF00005 ABC transporter H9J98_03380 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H9J98_03385 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_03385 PF12911 N-terminal TM domain of oligopeptide transport permease C H9J98_03390 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_03395 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle H9J98_03400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_03400 PF00512 His Kinase A (phospho-acceptor) domain H9J98_03400 PF00072 Response regulator receiver domain H9J98_03400 PF00497 Bacterial extracellular solute-binding proteins, family 3 H9J98_03405 PF08468 Methyltransferase small domain N-terminal H9J98_03405 PF05175 Methyltransferase small domain H9J98_03410 PF01594 AI-2E family transporter H9J98_03420 PF00202 Aminotransferase class-III H9J98_03425 PF01521 Iron-sulphur cluster biosynthesis H9J98_03435 PF00873 AcrB/AcrD/AcrF family H9J98_03440 PF01476 LysM domain H9J98_03440 PF08525 Opacity-associated protein A N-terminal motif H9J98_03440 PF01551 Peptidase family M23 H9J98_03445 PF00579 tRNA synthetases class I (W and Y) H9J98_03455 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family H9J98_03460 PF13609 Gram-negative porin H9J98_03465 PF01272 Transcription elongation factor, GreA/GreB, C-term H9J98_03465 PF03449 Transcription elongation factor, N-terminal H9J98_03470 PF01985 CRS1 / YhbY (CRM) domain H9J98_03475 PF01728 FtsJ-like methyltransferase H9J98_03480 PF17862 AAA+ lid domain H9J98_03480 PF06480 FtsH Extracellular H9J98_03480 PF00004 ATPase family associated with various cellular activities (AAA) H9J98_03480 PF01434 Peptidase family M41 H9J98_03485 PF00809 Pterin binding enzyme H9J98_03490 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I H9J98_03490 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II H9J98_03490 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III H9J98_03490 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain H9J98_03495 PF03840 Preprotein translocase SecG subunit H9J98_03510 PF17384 RimP C-terminal SH3 domain H9J98_03510 PF02576 RimP N-terminal domain H9J98_03515 PF08529 NusA N-terminal domain H9J98_03515 PF13184 NusA-like KH domain H9J98_03515 PF00575 S1 RNA binding domain H9J98_03520 PF00009 Elongation factor Tu GTP binding domain H9J98_03520 PF04760 Translation initiation factor IF-2, N-terminal region H9J98_03520 PF11987 Translation-initiation factor 2 H9J98_03520 PF08364 Bacterial translation initiation factor IF-2 associated region H9J98_03525 PF02033 Ribosome-binding factor A H9J98_03530 PF01509 TruB family pseudouridylate synthase (N terminal domain) H9J98_03530 PF16198 tRNA pseudouridylate synthase B C-terminal domain H9J98_03530 PF09157 Pseudouridine synthase II TruB, C-terminal H9J98_03535 PF00312 Ribosomal protein S15 H9J98_03540 PF00013 KH domain H9J98_03540 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain H9J98_03540 PF00575 S1 RNA binding domain H9J98_03540 PF03725 3' exoribonuclease family, domain 2 H9J98_03540 PF01138 3' exoribonuclease family, domain 1 H9J98_03545 PF13181 Tetratricopeptide repeat H9J98_03545 PF07719 Tetratricopeptide repeat H9J98_03555 PF01554 MatE H9J98_03560 PF01136 Peptidase family U32 H9J98_03565 PF01136 Peptidase family U32 H9J98_03570 PF00563 EAL domain H9J98_03570 PF03707 Bacterial signalling protein N terminal repeat H9J98_03570 PF00990 Diguanylate cyclase, GGDEF domain H9J98_03575 PF02036 SCP-2 sterol transfer family H9J98_03580 PF13508 Acetyltransferase (GNAT) domain H9J98_03600 PF00009 Elongation factor Tu GTP binding domain H9J98_03600 PF16658 Class II release factor RF3, C-terminal domain H9J98_03600 PF03144 Elongation factor Tu domain 2 H9J98_03610 PF01026 TatD related DNase H9J98_03615 PF01773 Na+ dependent nucleoside transporter N-terminus H9J98_03615 PF07662 Na+ dependent nucleoside transporter C-terminus H9J98_03615 PF07670 Nucleoside recognition H9J98_03620 PF01791 DeoC/LacD family aldolase H9J98_03625 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain H9J98_03625 PF00591 Glycosyl transferase family, a/b domain H9J98_03625 PF02885 Glycosyl transferase family, helical bundle domain H9J98_03630 PF01676 Metalloenzyme superfamily H9J98_03635 PF01048 Phosphorylase superfamily H9J98_03645 PF18429 Domain of unknown function (DUF5609) H9J98_03655 PF18073 Rubredoxin metal binding domain H9J98_03660 PF00009 Elongation factor Tu GTP binding domain H9J98_03660 PF00679 Elongation factor G C-terminus H9J98_03660 PF03144 Elongation factor Tu domain 2 H9J98_03660 PF03764 Elongation factor G, domain IV H9J98_03660 PF14492 Elongation Factor G, domain II H9J98_03665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_03665 PF03466 LysR substrate binding domain H9J98_03675 PF00501 AMP-binding enzyme H9J98_03680 PF12833 Helix-turn-helix domain H9J98_03680 PF02805 Metal binding domain of Ada H9J98_03705 PF04972 BON domain H9J98_03705 PF13629 Pilus formation protein N terminal region H9J98_03705 PF00263 Bacterial type II and III secretion system protein H9J98_03735 PF00437 Type II/IV secretion system protein H9J98_03765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_03765 PF03466 LysR substrate binding domain H9J98_03770 PF13520 Amino acid permease H9J98_03775 PF04074 YhcH/YjgK/YiaL H9J98_03780 PF16353 Domain of unknown function(DUF4981) H9J98_03780 PF02837 Glycosyl hydrolases family 2, sugar binding domain H9J98_03780 PF02836 Glycosyl hydrolases family 2, TIM barrel domain H9J98_03780 PF00703 Glycosyl hydrolases family 2 H9J98_03780 PF02929 Beta galactosidase small chain H9J98_03785 PF00356 Bacterial regulatory proteins, lacI family H9J98_03790 PF16363 GDP-mannose 4,6 dehydratase H9J98_03795 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain H9J98_03795 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain H9J98_03800 PF00288 GHMP kinases N terminal domain H9J98_03800 PF08544 GHMP kinases C terminal H9J98_03800 PF10509 Galactokinase galactose-binding signature H9J98_03805 PF01263 Aldose 1-epimerase H9J98_03810 PF00356 Bacterial regulatory proteins, lacI family H9J98_03825 PF00356 Bacterial regulatory proteins, lacI family H9J98_03830 PF01588 Putative tRNA binding domain H9J98_03850 PF01544 CorA-like Mg2+ transporter protein H9J98_03855 PF16901 C-terminal domain of alpha-glycerophosphate oxidase H9J98_03855 PF01266 FAD dependent oxidoreductase H9J98_03860 PF08220 DeoR-like helix-turn-helix domain H9J98_03860 PF00455 DeoR C terminal sensor domain H9J98_03865 PF02782 FGGY family of carbohydrate kinases, C-terminal domain H9J98_03865 PF00370 FGGY family of carbohydrate kinases, N-terminal domain H9J98_03870 PF00230 Major intrinsic protein H9J98_03875 PF07690 Major Facilitator Superfamily H9J98_03880 PF03009 Glycerophosphoryl diester phosphodiesterase family H9J98_03885 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle H9J98_03885 PF14602 Hexapeptide repeat of succinyl-transferase H9J98_03890 PF07130 YebG protein H9J98_03895 PF03466 LysR substrate binding domain H9J98_03895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_03905 PF00884 Sulfatase H9J98_03905 PF11893 Domain of unknown function (DUF3413) H9J98_03910 PF17946 RecC C-terminal domain H9J98_03915 PF13361 UvrD-like helicase C-terminal domain H9J98_03915 PF00580 UvrD/REP helicase N-terminal domain H9J98_03915 PF12705 PD-(D/E)XK nuclease superfamily H9J98_03920 PF13538 UvrD-like helicase C-terminal domain H9J98_03945 PF00583 Acetyltransferase (GNAT) family H9J98_03945 PF00696 Amino acid kinase family H9J98_03955 PF06725 3D domain H9J98_03955 PF03562 MltA specific insert domain H9J98_03960 PF00899 ThiF family H9J98_03965 PF02657 Fe-S metabolism associated domain H9J98_03975 PF00266 Aminotransferase class-V H9J98_03980 PF01965 DJ-1/PfpI family H9J98_03985 PF08546 Ketopantoate reductase PanE/ApbA C terminal H9J98_03985 PF02558 Ketopantoate reductase PanE/ApbA H9J98_03990 PF03502 Nucleoside-specific channel-forming protein, Tsx H9J98_04005 PF04542 Sigma-70 region 2 H9J98_04005 PF04545 Sigma-70, region 4 H9J98_04015 PF07690 Major Facilitator Superfamily H9J98_04020 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD H9J98_04025 PF03923 Uncharacterized lipoprotein H9J98_04025 PF08139 Prokaryotic membrane lipoprotein lipid attachment site H9J98_04030 PF05175 Methyltransferase small domain H9J98_04035 PF01722 BolA-like protein H9J98_04040 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) H9J98_04040 PF11973 NQRA C-terminal domain H9J98_04045 PF03116 NQR2, RnfD, RnfE family H9J98_04050 PF04205 FMN-binding domain H9J98_04055 PF02508 Rnf-Nqr subunit, membrane protein H9J98_04060 PF02508 Rnf-Nqr subunit, membrane protein H9J98_04065 PF00970 Oxidoreductase FAD-binding domain H9J98_04065 PF00111 2Fe-2S iron-sulfur cluster binding domain H9J98_04065 PF00175 Oxidoreductase NAD-binding domain H9J98_04070 PF02424 ApbE family H9J98_04085 PF00817 impB/mucB/samB family H9J98_04085 PF11798 IMS family HHH motif H9J98_04085 PF11799 impB/mucB/samB family C-terminal domain H9J98_04090 PF00270 DEAD/DEAH box helicase H9J98_04090 PF09382 RQC domain H9J98_04090 PF16124 RecQ zinc-binding H9J98_04090 PF00570 HRDC domain H9J98_04090 PF00271 Helicase conserved C-terminal domain H9J98_04095 PF03449 Transcription elongation factor, N-terminal H9J98_04095 PF01272 Transcription elongation factor, GreA/GreB, C-term H9J98_04110 PF00209 Sodium:neurotransmitter symporter family H9J98_04120 PF06786 Uncharacterised protein family (UPF0253) H9J98_04130 PF03129 Anticodon binding domain H9J98_04130 PF04073 Aminoacyl-tRNA editing domain H9J98_04130 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) H9J98_04135 PF18389 TrmO C-terminal domain H9J98_04135 PF01980 tRNA-methyltransferase O H9J98_04140 PF01197 Ribosomal protein L31 H9J98_04145 PF00444 Ribosomal protein L36 H9J98_04150 PF03806 AbgT putative transporter family H9J98_04155 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 H9J98_04180 PF04287 tRNA pseudouridine synthase C H9J98_04185 PF00849 RNA pseudouridylate synthase H9J98_04190 PF11944 Protein of unknown function (DUF3461) H9J98_04195 PF01909 Nucleotidyltransferase domain H9J98_04195 PF01966 HD domain H9J98_04195 PF08335 GlnD PII-uridylyltransferase H9J98_04195 PF01842 ACT domain H9J98_04200 PF00557 Metallopeptidase family M24 H9J98_04205 PF00318 Ribosomal protein S2 H9J98_04210 PF00889 Elongation factor TS H9J98_04215 PF00696 Amino acid kinase family H9J98_04220 PF01765 Ribosome recycling factor H9J98_04225 PF01255 Putative undecaprenyl diphosphate synthase H9J98_04235 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain H9J98_04235 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase H9J98_04235 PF13288 DXP reductoisomerase C-terminal domain H9J98_04240 PF02163 Peptidase family M50 H9J98_04240 PF17820 PDZ domain H9J98_04245 PF01103 Surface antigen H9J98_04245 PF07244 Surface antigen variable number repeat H9J98_04250 PF03938 Outer membrane protein (OmpH-like) H9J98_04255 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD H9J98_04255 PF00132 Bacterial transferase hexapeptide (six repeats) H9J98_04260 PF07977 FabA-like domain H9J98_04265 PF00132 Bacterial transferase hexapeptide (six repeats) H9J98_04265 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 H9J98_04270 PF02684 Lipid-A-disaccharide synthetase H9J98_04275 PF01351 Ribonuclease HII H9J98_04280 PF17657 Bacterial DNA polymerase III alpha subunit finger domain H9J98_04280 PF14579 Helix-hairpin-helix motif H9J98_04280 PF02811 PHP domain H9J98_04280 PF01336 OB-fold nucleic acid binding domain H9J98_04280 PF07733 Bacterial DNA polymerase III alpha NTPase domain H9J98_04285 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit H9J98_04290 PF01171 PP-loop family H9J98_04290 PF09179 TilS substrate binding domain H9J98_04290 PF11734 TilS substrate C-terminal domain H9J98_04295 PF00034 Cytochrome c H9J98_04300 PF00543 Nitrogen regulatory protein P-II H9J98_04305 PF03372 Endonuclease/Exonuclease/phosphatase family H9J98_04315 PF01476 LysM domain H9J98_04315 PF01464 Transglycosylase SLT domain H9J98_04320 PF16123 Hydroxyacylglutathione hydrolase C-terminus H9J98_04320 PF00753 Metallo-beta-lactamase superfamily H9J98_04325 PF08241 Methyltransferase domain H9J98_04330 PF00075 RNase H H9J98_04335 PF00929 Exonuclease H9J98_04345 PF01740 STAS domain H9J98_04345 PF00916 Sulfate permease family H9J98_04350 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H9J98_04350 PF02770 Acyl-CoA dehydrogenase, middle domain H9J98_04350 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H9J98_04350 PF09317 Domain of unknown function (DUF1974) H9J98_04355 PF13580 SIS domain H9J98_04360 PF13230 Glutamine amidotransferases class-II H9J98_04365 PF00551 Formyl transferase H9J98_04370 PF00586 AIR synthase related protein, N-terminal domain H9J98_04370 PF02769 AIR synthase related protein, C-terminal domain H9J98_04380 PF00860 Permease family H9J98_04395 PF03358 NADPH-dependent FMN reductase H9J98_04400 PF03960 ArsC family H9J98_04405 PF01435 Peptidase family M48 H9J98_04405 PF13181 Tetratricopeptide repeat H9J98_04415 PF01594 AI-2E family transporter H9J98_04420 PF00578 AhpC/TSA family H9J98_04425 PF01842 ACT domain H9J98_04430 PF00701 Dihydrodipicolinate synthetase family H9J98_04435 PF06804 NlpB/DapX lipoprotein H9J98_04450 PF07687 Peptidase dimerisation domain H9J98_04450 PF01546 Peptidase family M20/M25/M40 H9J98_04455 PF03960 ArsC family H9J98_04475 PF11143 Protein of unknown function (DUF2919) H9J98_04480 PF04261 Dyp-type peroxidase family H9J98_04485 PF00669 Bacterial flagellin N-terminal helical region H9J98_04485 PF00700 Bacterial flagellin C-terminal helical region H9J98_04485 PF07196 Flagellin hook IN motif H9J98_04490 PF07196 Flagellin hook IN motif H9J98_04490 PF00669 Bacterial flagellin N-terminal helical region H9J98_04490 PF00700 Bacterial flagellin C-terminal helical region H9J98_04495 PF00700 Bacterial flagellin C-terminal helical region H9J98_04495 PF07196 Flagellin hook IN motif H9J98_04495 PF00669 Bacterial flagellin N-terminal helical region H9J98_04500 PF03646 FlaG protein H9J98_04505 PF07195 Flagellar hook-associated protein 2 C-terminus H9J98_04505 PF02465 Flagellar hook-associated protein 2 N-terminus H9J98_04505 PF07196 Flagellin hook IN motif H9J98_04515 PF02561 Flagellar protein FliS H9J98_04520 PF02954 Bacterial regulatory protein, Fis family H9J98_04520 PF06490 Flagellar regulatory protein FleQ H9J98_04520 PF00158 Sigma-54 interaction domain H9J98_04525 PF13188 PAS domain H9J98_04525 PF00512 His Kinase A (phospho-acceptor) domain H9J98_04525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_04530 PF00158 Sigma-54 interaction domain H9J98_04530 PF00072 Response regulator receiver domain H9J98_04530 PF02954 Bacterial regulatory protein, Fis family H9J98_04535 PF02049 Flagellar hook-basal body complex protein FliE H9J98_04540 PF08345 Flagellar M-ring protein C-terminal H9J98_04540 PF01514 Secretory protein of YscJ/FliF family H9J98_04545 PF01706 FliG C-terminal domain H9J98_04545 PF14841 FliG middle domain H9J98_04545 PF14842 FliG N-terminal domain H9J98_04555 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain H9J98_04555 PF18269 T3SS EscN ATPase C-terminal domain H9J98_04575 PF02154 Flagellar motor switch protein FliM H9J98_04575 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term H9J98_04580 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term H9J98_04585 PF04347 Flagellar biosynthesis protein, FliO H9J98_04590 PF00813 FliP family H9J98_04595 PF01313 Bacterial export proteins, family 3 H9J98_04600 PF01311 Bacterial export proteins, family 1 H9J98_04620 PF00583 Acetyltransferase (GNAT) family H9J98_04620 PF00814 Glycoprotease family H9J98_04630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_04630 PF00072 Response regulator receiver domain H9J98_04635 PF00155 Aminotransferase class I and II H9J98_04640 PF01926 50S ribosome-binding GTPase H9J98_04645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_04645 PF03466 LysR substrate binding domain H9J98_04655 PF13936 Helix-turn-helix domain H9J98_04655 PF00665 Integrase core domain H9J98_04670 PF00694 Aconitase C-terminal domain H9J98_04670 PF00330 Aconitase family (aconitate hydratase) H9J98_04675 PF00313 'Cold-shock' DNA-binding domain H9J98_04700 PF02423 Ornithine cyclodeaminase/mu-crystallin family H9J98_04705 PF01168 Alanine racemase, N-terminal domain H9J98_04705 PF14031 Putative serine dehydratase domain H9J98_04710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_04710 PF03466 LysR substrate binding domain H9J98_04715 PF00561 alpha/beta hydrolase fold H9J98_04735 PF00771 FHIPEP family H9J98_04740 PF00448 SRP54-type protein, GTPase domain H9J98_04745 PF10609 NUBPL iron-transfer P-loop NTPase H9J98_04750 PF04542 Sigma-70 region 2 H9J98_04750 PF04539 Sigma-70 region 3 H9J98_04750 PF04545 Sigma-70, region 4 H9J98_04755 PF00072 Response regulator receiver domain H9J98_04760 PF04344 Chemotaxis phosphatase, CheZ H9J98_04765 PF00072 Response regulator receiver domain H9J98_04765 PF01627 Hpt domain H9J98_04765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_04765 PF01584 CheW-like domain H9J98_04765 PF02895 Signal transducing histidine kinase, homodimeric domain H9J98_04770 PF01339 CheB methylesterase H9J98_04770 PF00072 Response regulator receiver domain H9J98_04775 PF13614 AAA domain H9J98_04785 PF01584 CheW-like domain H9J98_04795 PF00005 ABC transporter H9J98_04800 PF03379 CcmB protein H9J98_04805 PF01578 Cytochrome C assembly protein H9J98_04810 PF04995 Heme exporter protein D (CcmD) H9J98_04815 PF03100 CcmE H9J98_04820 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal H9J98_04820 PF01578 Cytochrome C assembly protein H9J98_04825 PF08534 Redoxin H9J98_04830 PF03918 Cytochrome C biogenesis protein H9J98_04840 PF04333 MlaA lipoprotein H9J98_04845 PF01610 Transposase H9J98_04845 PF13542 Helix-turn-helix domain of transposase family ISL3 H9J98_04845 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 H9J98_04850 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) H9J98_04855 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) H9J98_04865 PF04542 Sigma-70 region 2 H9J98_04865 PF08281 Sigma-70, region 4 H9J98_04870 PF02803 Thiolase, C-terminal domain H9J98_04870 PF00108 Thiolase, N-terminal domain H9J98_04875 PF00378 Enoyl-CoA hydratase/isomerase H9J98_04875 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain H9J98_04875 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain H9J98_04885 PF00675 Insulinase (Peptidase family M16) H9J98_04885 PF05193 Peptidase M16 inactive domain H9J98_04885 PF16187 Middle or third domain of peptidase_M16 H9J98_04890 PF00300 Histidine phosphatase superfamily (branch 1) H9J98_04895 PF01713 Smr domain H9J98_04900 PF05175 Methyltransferase small domain H9J98_04905 PF01264 Chorismate synthase H9J98_04910 PF03458 UPF0126 domain H9J98_04915 PF04315 Elongation factor P hydroxylase H9J98_04920 PF08891 YfcL protein H9J98_04925 PF03358 NADPH-dependent FMN reductase H9J98_04930 PF01266 FAD dependent oxidoreductase H9J98_04930 PF05430 S-adenosyl-L-methionine-dependent methyltransferase H9J98_04935 PF00109 Beta-ketoacyl synthase, N-terminal domain H9J98_04935 PF02801 Beta-ketoacyl synthase, C-terminal domain H9J98_04940 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain H9J98_04940 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain H9J98_04940 PF11890 Domain of unknown function (DUF3410) H9J98_04945 PF01118 Semialdehyde dehydrogenase, NAD binding domain H9J98_04945 PF02774 Semialdehyde dehydrogenase, dimerisation domain H9J98_04955 PF01416 tRNA pseudouridine synthase H9J98_04960 PF01039 Carboxyl transferase domain H9J98_04960 PF17848 Acetyl-coA carboxylase zinc finger domain H9J98_04965 PF08245 Mur ligase middle domain H9J98_04965 PF02875 Mur ligase family, glutamate ligase domain H9J98_04970 PF05036 Sporulation related domain H9J98_04975 PF02674 Colicin V production protein H9J98_04980 PF00156 Phosphoribosyl transferase domain H9J98_04985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_04985 PF03466 LysR substrate binding domain H9J98_04990 PF00072 Response regulator receiver domain H9J98_04995 PF04304 Protein of unknown function (DUF454) H9J98_05000 PF00156 Phosphoribosyl transferase domain H9J98_05005 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding H9J98_05005 PF12170 DNA polymerase III tau subunit V interacting with alpha H9J98_05005 PF12169 DNA polymerase III subunits gamma and tau domain III H9J98_05010 PF02575 YbaB/EbfC DNA-binding family H9J98_05015 PF02132 RecR protein H9J98_05015 PF13662 Toprim domain H9J98_05020 PF00230 Major intrinsic protein H9J98_05030 PF01042 Endoribonuclease L-PSP H9J98_05035 PF03313 Serine dehydratase alpha chain H9J98_05045 PF03692 Putative zinc- or iron-chelating domain H9J98_05050 PF04226 Transglycosylase associated protein H9J98_05055 PF03692 Putative zinc- or iron-chelating domain H9J98_05060 PF00924 Mechanosensitive ion channel H9J98_05060 PF05552 Conserved TM helix H9J98_05065 PF03992 Antibiotic biosynthesis monooxygenase H9J98_05070 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H9J98_05080 PF00245 Alkaline phosphatase H9J98_05095 PF13847 Methyltransferase domain H9J98_05100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9J98_05100 PF00672 HAMP domain H9J98_05100 PF02743 Cache domain H9J98_05105 PF01263 Aldose 1-epimerase H9J98_05110 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain H9J98_05110 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain H9J98_05115 PF01641 SelR domain H9J98_05125 PF07023 Protein of unknown function (DUF1315) H9J98_05130 PF00710 Asparaginase, N-terminal H9J98_05130 PF17763 Glutaminase/Asparaginase C-terminal domain H9J98_05135 PF01343 Peptidase family S49 H9J98_05140 PF07992 Pyridine nucleotide-disulphide oxidoreductase H9J98_05140 PF00724 NADH:flavin oxidoreductase / NADH oxidase family H9J98_05145 PF00881 Nitroreductase family H9J98_05150 PF01751 Toprim domain H9J98_05150 PF01131 DNA topoisomerase H9J98_05160 PF00106 short chain dehydrogenase H9J98_05165 PF00850 Histone deacetylase domain H9J98_05175 PF11893 Domain of unknown function (DUF3413) H9J98_05175 PF00884 Sulfatase H9J98_05180 PF07208 Protein of unknown function (DUF1414) H9J98_05185 PF04245 37-kD nucleoid-associated bacterial protein H9J98_05200 PF03553 Na+/H+ antiporter family H9J98_05205 PF01118 Semialdehyde dehydrogenase, NAD binding domain H9J98_05205 PF02774 Semialdehyde dehydrogenase, dimerisation domain H9J98_05210 PF00027 Cyclic nucleotide-binding domain H9J98_05210 PF00520 Ion transport protein H9J98_05215 PF01914 MarC family integral membrane protein H9J98_05220 PF00465 Iron-containing alcohol dehydrogenase H9J98_05220 PF00171 Aldehyde dehydrogenase family H9J98_05235 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain H9J98_05235 PF02777 Iron/manganese superoxide dismutases, C-terminal domain H9J98_05240 PF00462 Glutaredoxin H9J98_05250 PF13726 Na+-H+ antiporter family H9J98_05250 PF03553 Na+/H+ antiporter family H9J98_05255 PF00929 Exonuclease H9J98_05260 PF00691 OmpA family H9J98_05260 PF18393 MotY N-terminal domain H9J98_05265 PF10952 Protein of unknown function (DUF2753) H9J98_05270 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H9J98_05275 PF10576 Iron-sulfur binding domain of endonuclease III H9J98_05275 PF00730 HhH-GPD superfamily base excision DNA repair protein H9J98_05275 PF00633 Helix-hairpin-helix motif H9J98_05280 PF02508 Rnf-Nqr subunit, membrane protein H9J98_05285 PF04205 FMN-binding domain H9J98_05290 PF03116 NQR2, RnfD, RnfE family H9J98_05295 PF12838 4Fe-4S dicluster domain H9J98_05295 PF13375 RnfC Barrel sandwich hybrid domain H9J98_05295 PF10531 SLBB domain H9J98_05295 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit H9J98_05300 PF04060 Putative Fe-S cluster H9J98_05305 PF02508 Rnf-Nqr subunit, membrane protein H9J98_05315 PF04851 Type III restriction enzyme, res subunit H9J98_05315 PF00271 Helicase conserved C-terminal domain H9J98_05315 PF02151 UvrB/uvrC motif H9J98_05315 PF12344 Ultra-violet resistance protein B H9J98_05315 PF17757 UvrB interaction domain H9J98_05320 PF02954 Bacterial regulatory protein, Fis family H9J98_05320 PF00072 Response regulator receiver domain H9J98_05320 PF00158 Sigma-54 interaction domain H9J98_05325 PF01627 Hpt domain H9J98_05330 PF01933 Uncharacterised protein family UPF0052 H9J98_05335 PF04055 Radical SAM superfamily H9J98_05335 PF06463 Molybdenum Cofactor Synthesis C H9J98_05340 PF00994 Probable molybdopterin binding domain H9J98_05345 PF01967 MoaC family H9J98_05350 PF02597 ThiS family H9J98_05355 PF02391 MoaE protein H9J98_05360 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle H9J98_05365 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_05370 PF12911 N-terminal TM domain of oligopeptide transport permease C H9J98_05370 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_05375 PF00005 ABC transporter H9J98_05375 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H9J98_05380 PF00005 ABC transporter H9J98_05380 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H9J98_05385 PF13409 Glutathione S-transferase, N-terminal domain H9J98_05395 PF13194 Domain of unknown function (DUF4010) H9J98_05400 PF07085 DRTGG domain H9J98_05400 PF01515 Phosphate acetyl/butaryl transferase H9J98_05405 PF00871 Acetokinase family H9J98_05410 PF04217 Protein of unknown function, DUF412 H9J98_05420 PF02653 Branched-chain amino acid transport system / permease component H9J98_05425 PF00005 ABC transporter H9J98_05430 PF02903 Alpha amylase, N-terminal ig-like domain H9J98_05430 PF00128 Alpha amylase, catalytic domain H9J98_05435 PF00072 Response regulator receiver domain H9J98_05435 PF00990 Diguanylate cyclase, GGDEF domain H9J98_05440 PF01207 Dihydrouridine synthase (Dus) H9J98_05445 PF03695 Uncharacterised protein family (UPF0149) H9J98_05445 PF02810 SEC-C motif H9J98_05450 PF02600 Disulfide bond formation protein DsbB H9J98_05455 PF06450 Bacterial Na+/H+ antiporter B (NhaB) H9J98_05460 PF00392 Bacterial regulatory proteins, gntR family H9J98_05460 PF07840 FadR C-terminal domain H9J98_05470 PF01588 Putative tRNA binding domain H9J98_05470 PF09334 tRNA synthetases class I (M) H9J98_05475 PF10609 NUBPL iron-transfer P-loop NTPase H9J98_05480 PF00485 Phosphoribulokinase / Uridine kinase family H9J98_05490 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP H9J98_05490 PF12557 Cob(I)alamin adenosyltransferase N terminal H9J98_05495 PF01451 Low molecular weight phosphotyrosine protein phosphatase H9J98_05500 PF00916 Sulfate permease family H9J98_05500 PF01740 STAS domain H9J98_05505 PF10150 Ribonuclease E/G family H9J98_05505 PF12111 Polyribonucleotide phosphorylase C terminal H9J98_05505 PF00575 S1 RNA binding domain H9J98_05510 PF01479 S4 domain H9J98_05510 PF00849 RNA pseudouridylate synthase H9J98_05515 PF02545 Maf-like protein H9J98_05520 PF02620 Large ribosomal RNA subunit accumulation protein YceD H9J98_05525 PF01783 Ribosomal L32p protein family H9J98_05530 PF02504 Fatty acid synthesis protein H9J98_05535 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal H9J98_05535 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III H9J98_05540 PF00698 Acyl transferase domain H9J98_05550 PF00550 Phosphopantetheine attachment site H9J98_05555 PF02801 Beta-ketoacyl synthase, C-terminal domain H9J98_05555 PF00109 Beta-ketoacyl synthase, N-terminal domain H9J98_05560 PF01063 Amino-transferase class IV H9J98_05565 PF02618 YceG-like family H9J98_05570 PF02223 Thymidylate kinase H9J98_05575 PF09115 DNA polymerase III, delta subunit, C terminal H9J98_05580 PF01026 TatD related DNase H9J98_05585 PF00367 phosphotransferase system, EIIB H9J98_05585 PF02378 Phosphotransferase system, EIIC H9J98_05600 PF00209 Sodium:neurotransmitter symporter family H9J98_05615 PF01734 Patatin-like phospholipase H9J98_05620 PF02887 Pyruvate kinase, alpha/beta domain H9J98_05620 PF00224 Pyruvate kinase, barrel domain H9J98_05625 PF00480 ROK family H9J98_05630 PF01584 CheW-like domain H9J98_05630 PF00072 Response regulator receiver domain H9J98_05635 PF02811 PHP domain H9J98_05635 PF07733 Bacterial DNA polymerase III alpha NTPase domain H9J98_05635 PF14579 Helix-hairpin-helix motif H9J98_05635 PF17657 Bacterial DNA polymerase III alpha subunit finger domain H9J98_05635 PF01336 OB-fold nucleic acid binding domain H9J98_05650 PF00106 short chain dehydrogenase H9J98_05655 PF08496 Peptidase family S49 N-terminal H9J98_05655 PF01343 Peptidase family S49 H9J98_05660 PF02224 Cytidylate kinase H9J98_05665 PF00575 S1 RNA binding domain H9J98_05670 PF00216 Bacterial DNA-binding protein H9J98_05675 PF06305 Lipopolysaccharide assembly protein A domain H9J98_05680 PF18073 Rubredoxin metal binding domain H9J98_05685 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family H9J98_05690 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle H9J98_05700 PF01370 NAD dependent epimerase/dehydratase family H9J98_05705 PF00535 Glycosyl transferase family 2 H9J98_05715 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase H9J98_05725 PF02470 MlaD protein H9J98_05730 PF04403 Paraquat-inducible protein A H9J98_05735 PF13442 Cytochrome C oxidase, cbb3-type, subunit III H9J98_05740 PF00034 Cytochrome c H9J98_05745 PF01568 Molydopterin dinucleotide binding domain H9J98_05745 PF00384 Molybdopterin oxidoreductase H9J98_05745 PF04879 Molybdopterin oxidoreductase Fe4S4 domain H9J98_05750 PF03916 Polysulphide reductase, NrfD H9J98_05755 PF13247 4Fe-4S dicluster domain H9J98_05760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_05760 PF00512 His Kinase A (phospho-acceptor) domain H9J98_05765 PF00196 Bacterial regulatory proteins, luxR family H9J98_05765 PF00072 Response regulator receiver domain H9J98_05770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_05770 PF03466 LysR substrate binding domain H9J98_05780 PF11412 Disulphide bond corrector protein DsbC H9J98_05780 PF02683 Cytochrome C biogenesis protein transmembrane region H9J98_05785 PF00085 Thioredoxin H9J98_05805 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H9J98_05815 PF00005 ABC transporter H9J98_05815 PF02687 FtsX-like permease family H9J98_05815 PF12704 MacB-like periplasmic core domain H9J98_05820 PF12704 MacB-like periplasmic core domain H9J98_05820 PF02687 FtsX-like permease family H9J98_05820 PF00005 ABC transporter H9J98_05825 PF00005 ABC transporter H9J98_05825 PF02687 FtsX-like permease family H9J98_05825 PF12704 MacB-like periplasmic core domain H9J98_05830 PF00857 Isochorismatase family H9J98_05835 PF02311 AraC-like ligand binding domain H9J98_05835 PF12833 Helix-turn-helix domain H9J98_05845 PF08267 Cobalamin-independent synthase, N-terminal domain H9J98_05845 PF01717 Cobalamin-independent synthase, Catalytic domain H9J98_05855 PF00529 HlyD membrane-fusion protein of T1SS H9J98_05855 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H9J98_05860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_05860 PF03466 LysR substrate binding domain H9J98_05880 PF00672 HAMP domain H9J98_05880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_05880 PF00512 His Kinase A (phospho-acceptor) domain H9J98_05885 PF00486 Transcriptional regulatory protein, C terminal H9J98_05885 PF00072 Response regulator receiver domain H9J98_05890 PF00672 HAMP domain H9J98_05890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9J98_05895 PF08497 Radical SAM N-terminal H9J98_05895 PF11842 Domain of unknown function (DUF3362) H9J98_05895 PF04055 Radical SAM superfamily H9J98_05900 PF00360 Phytochrome region H9J98_05900 PF00990 Diguanylate cyclase, GGDEF domain H9J98_05900 PF00563 EAL domain H9J98_05900 PF01590 GAF domain H9J98_05915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_05915 PF03466 LysR substrate binding domain H9J98_05920 PF08267 Cobalamin-independent synthase, N-terminal domain H9J98_05920 PF01717 Cobalamin-independent synthase, Catalytic domain H9J98_05930 PF03795 YCII-related domain H9J98_05935 PF03061 Thioesterase superfamily H9J98_05940 PF04279 Intracellular septation protein A H9J98_05950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_05950 PF00072 Response regulator receiver domain H9J98_05955 PF17327 Acyl homoserine lactone synthase H9J98_05960 PF00375 Sodium:dicarboxylate symporter family H9J98_05965 PF00501 AMP-binding enzyme H9J98_05965 PF13193 AMP-binding enzyme C-terminal domain H9J98_05970 PF00027 Cyclic nucleotide-binding domain H9J98_05970 PF13545 Crp-like helix-turn-helix domain H9J98_05975 PF00290 Tryptophan synthase alpha chain H9J98_05980 PF00291 Pyridoxal-phosphate dependent enzyme H9J98_05985 PF00218 Indole-3-glycerol phosphate synthase H9J98_05985 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase H9J98_05990 PF02885 Glycosyl transferase family, helical bundle domain H9J98_05990 PF00591 Glycosyl transferase family, a/b domain H9J98_05995 PF00117 Glutamine amidotransferase class-I H9J98_06000 PF04715 Anthranilate synthase component I, N terminal region H9J98_06000 PF00425 chorismate binding enzyme H9J98_06005 PF08056 Tryptophan operon leader peptide H9J98_06010 PF02811 PHP domain H9J98_06015 PF01300 Telomere recombination H9J98_06025 PF00849 RNA pseudouridylate synthase H9J98_06025 PF01479 S4 domain H9J98_06030 PF04269 Protein of unknown function, DUF440 H9J98_06035 PF01132 Elongation factor P (EF-P) OB domain H9J98_06035 PF08207 Elongation factor P (EF-P) KOW-like domain H9J98_06035 PF09285 Elongation factor P, C-terminal H9J98_06045 PF03104 DNA polymerase family B, exonuclease domain H9J98_06045 PF00136 DNA polymerase family B H9J98_06050 PF00196 Bacterial regulatory proteins, luxR family H9J98_06050 PF00072 Response regulator receiver domain H9J98_06055 PF01541 GIY-YIG catalytic domain H9J98_06055 PF02151 UvrB/uvrC motif H9J98_06055 PF08459 UvrC Helix-hairpin-helix N-terminal H9J98_06060 PF01066 CDP-alcohol phosphatidyltransferase H9J98_06085 PF00202 Aminotransferase class-III H9J98_06090 PF16653 Saccharopine dehydrogenase C-terminal domain H9J98_06090 PF03435 Saccharopine dehydrogenase NADP binding domain H9J98_06095 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain H9J98_06110 PF00994 Probable molybdopterin binding domain H9J98_06120 PF00268 Ribonucleotide reductase, small chain H9J98_06125 PF03477 ATP cone domain H9J98_06125 PF02867 Ribonucleotide reductase, barrel domain H9J98_06125 PF00317 Ribonucleotide reductase, all-alpha domain H9J98_06135 PF03989 DNA gyrase C-terminal domain, beta-propeller H9J98_06135 PF00521 DNA gyrase/topoisomerase IV, subunit A H9J98_06150 PF02335 Cytochrome c552 H9J98_06160 PF13247 4Fe-4S dicluster domain H9J98_06165 PF03916 Polysulphide reductase, NrfD H9J98_06170 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal H9J98_06170 PF01578 Cytochrome C assembly protein H9J98_06175 PF08534 Redoxin H9J98_06180 PF03918 Cytochrome C biogenesis protein H9J98_06190 PF00925 GTP cyclohydrolase II H9J98_06215 PF03734 L,D-transpeptidase catalytic domain H9J98_06215 PF01471 Putative peptidoglycan binding domain H9J98_06220 PF05951 Bacterial protein of unknown function (DUF882) H9J98_06225 PF00753 Metallo-beta-lactamase superfamily H9J98_06240 PF03480 Bacterial extracellular solute-binding protein, family 7 H9J98_06250 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component H9J98_06255 PF07730 Histidine kinase H9J98_06255 PF17200 Single Cache domain 2 H9J98_06260 PF00196 Bacterial regulatory proteins, luxR family H9J98_06260 PF00072 Response regulator receiver domain H9J98_06265 PF01047 MarR family H9J98_06270 PF02028 BCCT, betaine/carnitine/choline family transporter H9J98_06275 PF00672 HAMP domain H9J98_06275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9J98_06295 PF00155 Aminotransferase class I and II H9J98_06310 PF00392 Bacterial regulatory proteins, gntR family H9J98_06310 PF00155 Aminotransferase class I and II H9J98_06320 PF00152 tRNA synthetases class II (D, K and N) H9J98_06320 PF01336 OB-fold nucleic acid binding domain H9J98_06325 PF12729 Four helix bundle sensory module for signal transduction H9J98_06325 PF00672 HAMP domain H9J98_06325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9J98_06330 PF01242 6-pyruvoyl tetrahydropterin synthase H9J98_06340 PF04940 Sensors of blue-light using FAD H9J98_06340 PF00563 EAL domain H9J98_06345 PF03313 Serine dehydratase alpha chain H9J98_06345 PF03315 Serine dehydratase beta chain H9J98_06350 PF03222 Tryptophan/tyrosine permease family H9J98_06355 PF00293 NUDIX domain H9J98_06365 PF00072 Response regulator receiver domain H9J98_06365 PF00512 His Kinase A (phospho-acceptor) domain H9J98_06365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_06365 PF09308 LuxQ, periplasmic H9J98_06370 PF04715 Anthranilate synthase component I, N terminal region H9J98_06370 PF00425 chorismate binding enzyme H9J98_06385 PF04317 YcjX-like family, DUF463 H9J98_06390 PF05128 Domain of unknown function (DUF697) H9J98_06395 PF18024 Helix-turn-helix domain H9J98_06395 PF00158 Sigma-54 interaction domain H9J98_06400 PF13302 Acetyltransferase (GNAT) domain H9J98_06415 PF13495 Phage integrase, N-terminal SAM-like domain H9J98_06415 PF00589 Phage integrase family H9J98_06580 PF00583 Acetyltransferase (GNAT) family H9J98_06655 PF16363 GDP-mannose 4,6 dehydratase H9J98_06660 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain H9J98_06660 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain H9J98_06665 PF10509 Galactokinase galactose-binding signature H9J98_06665 PF08544 GHMP kinases C terminal H9J98_06665 PF00288 GHMP kinases N terminal domain H9J98_06680 PF00356 Bacterial regulatory proteins, lacI family H9J98_06685 PF02929 Beta galactosidase small chain H9J98_06685 PF16353 Domain of unknown function(DUF4981) H9J98_06685 PF00703 Glycosyl hydrolases family 2 H9J98_06685 PF02836 Glycosyl hydrolases family 2, TIM barrel domain H9J98_06685 PF02837 Glycosyl hydrolases family 2, sugar binding domain H9J98_06695 PF02264 LamB porin H9J98_06700 PF16875 Glycosyl hydrolase family 36 N-terminal domain H9J98_06700 PF16874 Glycosyl hydrolase family 36 C-terminal domain H9J98_06720 PF13419 Haloacid dehalogenase-like hydrolase H9J98_06725 PF01548 Transposase H9J98_06725 PF02371 Transposase IS116/IS110/IS902 family H9J98_06735 PF07745 Glycosyl hydrolase family 53 H9J98_06740 PF00356 Bacterial regulatory proteins, lacI family H9J98_06745 PF00005 ABC transporter H9J98_06745 PF17912 MalK OB fold domain H9J98_06750 PF13416 Bacterial extracellular solute-binding protein H9J98_06755 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_06760 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_06765 PF07745 Glycosyl hydrolase family 53 H9J98_06770 PF02449 Beta-galactosidase H9J98_06770 PF08533 Beta-galactosidase C-terminal domain H9J98_06770 PF08532 Beta-galactosidase trimerisation domain H9J98_06775 PF02264 LamB porin H9J98_06780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9J98_06780 PF00672 HAMP domain H9J98_06780 PF12729 Four helix bundle sensory module for signal transduction H9J98_06795 PF00873 AcrB/AcrD/AcrF family H9J98_06820 PF00873 AcrB/AcrD/AcrF family H9J98_06825 PF01548 Transposase H9J98_06825 PF02371 Transposase IS116/IS110/IS902 family H9J98_06870 PF01810 LysE type translocator H9J98_06910 PF01610 Transposase H9J98_06910 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 H9J98_06910 PF13542 Helix-turn-helix domain of transposase family ISL3 H9J98_07010 PF10137 Predicted nucleotide-binding protein containing TIR-like domain H9J98_07105 PF13508 Acetyltransferase (GNAT) domain H9J98_07140 PF00665 Integrase core domain H9J98_07145 PF01695 IstB-like ATP binding protein H9J98_07305 PF00583 Acetyltransferase (GNAT) family H9J98_07320 PF00589 Phage integrase family H9J98_07345 PF04993 TfoX N-terminal domain H9J98_07345 PF04994 TfoX C-terminal domain H9J98_07360 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H9J98_07365 PF00873 AcrB/AcrD/AcrF family H9J98_07375 PF13302 Acetyltransferase (GNAT) domain H9J98_07415 PF13936 Helix-turn-helix domain H9J98_07415 PF00665 Integrase core domain H9J98_07425 PF01103 Surface antigen H9J98_07425 PF17243 POTRA domain TamA domain 1 H9J98_07430 PF13091 PLD-like domain H9J98_07435 PF00135 Carboxylesterase family H9J98_07450 PF13533 Biotin-lipoyl like H9J98_07460 PF06826 Predicted Permease Membrane Region H9J98_07460 PF02080 TrkA-C domain H9J98_07465 PF00155 Aminotransferase class I and II H9J98_07470 PF08543 Phosphomethylpyrimidine kinase H9J98_07485 PF03466 LysR substrate binding domain H9J98_07485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_07515 PF03553 Na+/H+ antiporter family H9J98_07520 PF00120 Glutamine synthetase, catalytic domain H9J98_07525 PF07722 Peptidase C26 H9J98_07530 PF07883 Cupin domain H9J98_07530 PF01381 Helix-turn-helix H9J98_07535 PF00171 Aldehyde dehydrogenase family H9J98_07540 PF01266 FAD dependent oxidoreductase H9J98_07545 PF00795 Carbon-nitrogen hydrolase H9J98_07550 PF04371 Porphyromonas-type peptidyl-arginine deiminase H9J98_07555 PF00171 Aldehyde dehydrogenase family H9J98_07560 PF00202 Aminotransferase class-III H9J98_07565 PF01368 DHH family H9J98_07565 PF02833 DHHA2 domain H9J98_07570 PF00196 Bacterial regulatory proteins, luxR family H9J98_07570 PF00563 EAL domain H9J98_07585 PF12833 Helix-turn-helix domain H9J98_07595 PF01047 MarR family H9J98_07600 PF04237 YjbR H9J98_07610 PF01928 CYTH domain H9J98_07620 PF00132 Bacterial transferase hexapeptide (six repeats) H9J98_07620 PF12464 Maltose acetyltransferase H9J98_07635 PF00672 HAMP domain H9J98_07635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_07635 PF00512 His Kinase A (phospho-acceptor) domain H9J98_07635 PF01627 Hpt domain H9J98_07635 PF00072 Response regulator receiver domain H9J98_07635 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) H9J98_07640 PF03707 Bacterial signalling protein N terminal repeat H9J98_07640 PF00563 EAL domain H9J98_07640 PF00990 Diguanylate cyclase, GGDEF domain H9J98_07655 PF04204 Homoserine O-succinyltransferase H9J98_07665 PF13520 Amino acid permease H9J98_07670 PF03279 Bacterial lipid A biosynthesis acyltransferase H9J98_07675 PF02074 Carboxypeptidase Taq (M32) metallopeptidase H9J98_07680 PF01810 LysE type translocator H9J98_07690 PF01235 Sodium:alanine symporter family H9J98_07715 PF01966 HD domain H9J98_07720 PF00465 Iron-containing alcohol dehydrogenase H9J98_07725 PF03222 Tryptophan/tyrosine permease family H9J98_07745 PF00005 ABC transporter H9J98_07745 PF00664 ABC transporter transmembrane region H9J98_07750 PF00664 ABC transporter transmembrane region H9J98_07750 PF00005 ABC transporter H9J98_07775 PF00012 Hsp70 protein H9J98_07780 PF00012 Hsp70 protein H9J98_07790 PF17158 Membrane-associated sensor, integral membrane domain H9J98_07790 PF00990 Diguanylate cyclase, GGDEF domain H9J98_07820 PF04879 Molybdopterin oxidoreductase Fe4S4 domain H9J98_07820 PF00384 Molybdopterin oxidoreductase H9J98_07820 PF01568 Molydopterin dinucleotide binding domain H9J98_07825 PF13247 4Fe-4S dicluster domain H9J98_07825 PF12800 4Fe-4S binding domain H9J98_07830 PF04976 DMSO reductase anchor subunit (DmsC) H9J98_07835 PF02613 Nitrate reductase delta subunit H9J98_07845 PF02525 Flavodoxin-like fold H9J98_07850 PF00270 DEAD/DEAH box helicase H9J98_07850 PF11898 Domain of unknown function (DUF3418) H9J98_07850 PF04408 Helicase associated domain (HA2) H9J98_07850 PF00271 Helicase conserved C-terminal domain H9J98_07850 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold H9J98_07865 PF02028 BCCT, betaine/carnitine/choline family transporter H9J98_07875 PF02397 Bacterial sugar transferase H9J98_07880 PF00535 Glycosyl transferase family 2 H9J98_07885 PF13439 Glycosyltransferase Family 4 H9J98_07885 PF00534 Glycosyl transferases group 1 H9J98_07915 PF13439 Glycosyltransferase Family 4 H9J98_07915 PF00534 Glycosyl transferases group 1 H9J98_07920 PF13439 Glycosyltransferase Family 4 H9J98_07920 PF00534 Glycosyl transferases group 1 H9J98_07925 PF02954 Bacterial regulatory protein, Fis family H9J98_07925 PF00072 Response regulator receiver domain H9J98_07925 PF00158 Sigma-54 interaction domain H9J98_07940 PF10531 SLBB domain H9J98_07940 PF02563 Polysaccharide biosynthesis/export protein H9J98_07950 PF01740 STAS domain H9J98_07955 PF01068 ATP dependent DNA ligase domain H9J98_07955 PF14743 DNA ligase OB-like domain H9J98_07965 PF01554 MatE H9J98_07970 PF00677 Lumazine binding domain H9J98_07980 PF03881 Fructosamine kinase H9J98_07985 PF01339 CheB methylesterase H9J98_07985 PF00072 Response regulator receiver domain H9J98_07990 PF05230 MASE2 domain H9J98_07990 PF00990 Diguanylate cyclase, GGDEF domain H9J98_08000 PF00877 NlpC/P60 family H9J98_08005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9J98_08005 PF00672 HAMP domain H9J98_08005 PF12729 Four helix bundle sensory module for signal transduction H9J98_08040 PF03942 DTW domain H9J98_08045 PF00480 ROK family H9J98_08055 PF00994 Probable molybdopterin binding domain H9J98_08055 PF03454 MoeA C-terminal region (domain IV) H9J98_08055 PF03453 MoeA N-terminal region (domain I and II) H9J98_08060 PF12804 MobA-like NTP transferase domain H9J98_08065 PF00005 ABC transporter H9J98_08065 PF08402 TOBE domain H9J98_08070 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_08075 PF12849 PBP superfamily domain H9J98_08080 PF02954 Bacterial regulatory protein, Fis family H9J98_08080 PF00072 Response regulator receiver domain H9J98_08080 PF00158 Sigma-54 interaction domain H9J98_08085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_08085 PF00512 His Kinase A (phospho-acceptor) domain H9J98_08090 PF12848 ABC transporter H9J98_08090 PF00005 ABC transporter H9J98_08095 PF02634 FdhD/NarQ family H9J98_08115 PF02613 Nitrate reductase delta subunit H9J98_08125 PF04879 Molybdopterin oxidoreductase Fe4S4 domain H9J98_08125 PF00384 Molybdopterin oxidoreductase H9J98_08125 PF01568 Molydopterin dinucleotide binding domain H9J98_08130 PF13247 4Fe-4S dicluster domain H9J98_08145 PF13542 Helix-turn-helix domain of transposase family ISL3 H9J98_08145 PF01610 Transposase H9J98_08145 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 H9J98_08150 PF05593 RHS Repeat H9J98_08150 PF03527 RHS protein H9J98_08180 PF00909 Ammonium Transporter Family H9J98_08190 PF02146 Sir2 family H9J98_08195 PF13416 Bacterial extracellular solute-binding protein H9J98_08200 PF13416 Bacterial extracellular solute-binding protein H9J98_08205 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_08210 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_08215 PF00005 ABC transporter H9J98_08215 PF08402 TOBE domain H9J98_08235 PF01171 PP-loop family H9J98_08240 PF00582 Universal stress protein family H9J98_08245 PF00027 Cyclic nucleotide-binding domain H9J98_08245 PF13545 Crp-like helix-turn-helix domain H9J98_08260 PF00403 Heavy-metal-associated domain H9J98_08270 PF13442 Cytochrome C oxidase, cbb3-type, subunit III H9J98_08270 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP H9J98_08285 PF00115 Cytochrome C and Quinol oxidase polypeptide I H9J98_08300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_08300 PF00512 His Kinase A (phospho-acceptor) domain H9J98_08300 PF09308 LuxQ, periplasmic H9J98_08300 PF00072 Response regulator receiver domain H9J98_08320 PF06303 MatP N-terminal domain H9J98_08320 PF17414 MatP C-terminal ribbon-helix-helix domain H9J98_08325 PF13654 AAA domain H9J98_08325 PF05362 Lon protease (S16) C-terminal proteolytic domain H9J98_08330 PF07977 FabA-like domain H9J98_08335 PF04957 Ribosome modulation factor H9J98_08345 PF00005 ABC transporter H9J98_08345 PF16326 ABC transporter C-terminal domain H9J98_08345 PF12848 ABC transporter H9J98_08355 PF10672 S-adenosylmethionine-dependent methyltransferase H9J98_08355 PF02926 THUMP domain H9J98_08355 PF01170 Putative RNA methylase family UPF0020 H9J98_08360 PF07126 Cell-division protein ZapC H9J98_08365 PF01180 Dihydroorotate dehydrogenase H9J98_08370 PF05088 Bacterial NAD-glutamate dehydrogenase H9J98_08380 PF11940 Domain of unknown function (DUF3458) Ig-like fold H9J98_08380 PF17432 Domain of unknown function (DUF3458_C) ARM repeats H9J98_08380 PF01433 Peptidase family M1 domain H9J98_08390 PF17804 Tail specific protease N-terminal domain H9J98_08390 PF03572 Peptidase family S41 H9J98_08390 PF00595 PDZ domain H9J98_08390 PF11818 C-terminal domain of tail specific protease (DUF3340) H9J98_08395 PF04352 ProQ/FINO family H9J98_08395 PF17516 ProQ C-terminal domain H9J98_08400 PF13185 GAF domain H9J98_08405 PF00664 ABC transporter transmembrane region H9J98_08405 PF00005 ABC transporter H9J98_08410 PF04403 Paraquat-inducible protein A H9J98_08415 PF02470 MlaD protein H9J98_08420 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF H9J98_08420 PF01189 16S rRNA methyltransferase RsmB/F H9J98_08420 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF H9J98_08440 PF00793 DAHP synthetase I family H9J98_08445 PF04461 Protein of unknown function (DUF520) H9J98_08450 PF14824 Sirohaem biosynthesis protein central H9J98_08450 PF10414 Sirohaem synthase dimerisation region H9J98_08450 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases H9J98_08455 PF00497 Bacterial extracellular solute-binding proteins, family 3 H9J98_08460 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_08465 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_08470 PF00005 ABC transporter H9J98_08475 PF01027 Inhibitor of apoptosis-promoting Bax1 H9J98_08485 PF04358 DsrC like protein H9J98_08490 PF00708 Acylphosphatase H9J98_08495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9J98_08495 PF00672 HAMP domain H9J98_08495 PF02743 Cache domain H9J98_08500 PF17785 PUA-like domain H9J98_08500 PF10672 S-adenosylmethionine-dependent methyltransferase H9J98_08515 PF00691 OmpA family H9J98_08515 PF05736 OprF membrane domain H9J98_08530 PF00691 OmpA family H9J98_08530 PF05736 OprF membrane domain H9J98_08540 PF00990 Diguanylate cyclase, GGDEF domain H9J98_08540 PF17158 Membrane-associated sensor, integral membrane domain H9J98_08545 PF06508 Queuosine biosynthesis protein QueC H9J98_08550 PF04055 Radical SAM superfamily H9J98_08565 PF00089 Trypsin H9J98_08575 PF00501 AMP-binding enzyme H9J98_08575 PF13193 AMP-binding enzyme C-terminal domain H9J98_08575 PF16177 Acetyl-coenzyme A synthetase N-terminus H9J98_08580 PF04303 PrpF protein H9J98_08585 PF00330 Aconitase family (aconitate hydratase) H9J98_08585 PF00694 Aconitase C-terminal domain H9J98_08590 PF00285 Citrate synthase, C-terminal domain H9J98_08620 PF01970 Tripartite tricarboxylate transporter TctA family H9J98_08625 PF01925 Sulfite exporter TauE/SafE H9J98_08635 PF05844 YopD protein H9J98_08645 PF07720 Tetratricopeptide repeat H9J98_08650 PF04792 V antigen (LcrV) protein H9J98_08655 PF07216 LcrG protein H9J98_08660 PF09621 Type III secretion system regulator (LcrR) H9J98_08665 PF00771 FHIPEP family H9J98_08685 PF09059 TyeA H9J98_08690 PF07201 HrpJ-like domain H9J98_08695 PF02874 ATP synthase alpha/beta family, beta-barrel domain H9J98_08695 PF18269 T3SS EscN ATPase C-terminal domain H9J98_08695 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain H9J98_08710 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term H9J98_08715 PF00813 FliP family H9J98_08720 PF01313 Bacterial export proteins, family 3 H9J98_08725 PF01311 Bacterial export proteins, family 1 H9J98_08730 PF01312 FlhB HrpN YscU SpaS Family H9J98_08755 PF02661 Fic/DOC family H9J98_08765 PF02108 Flagellar assembly protein FliH H9J98_08775 PF01514 Secretory protein of YscJ/FliF family H9J98_08780 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI H9J98_08790 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) H9J98_08795 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF H9J98_08805 PF16697 Inner membrane component of T3SS, cytoplasmic domain H9J98_08805 PF16693 Inner membrane component of T3SS, periplasmic domain H9J98_08810 PF03958 Bacterial type II/III secretion system short domain H9J98_08810 PF00263 Bacterial type II and III secretion system protein H9J98_08825 PF12833 Helix-turn-helix domain H9J98_08845 PF00171 Aldehyde dehydrogenase family H9J98_08850 PF00158 Sigma-54 interaction domain H9J98_08850 PF02954 Bacterial regulatory protein, Fis family H9J98_08850 PF01590 GAF domain H9J98_08865 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain H9J98_08865 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase H9J98_08870 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase H9J98_08875 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain H9J98_08875 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain H9J98_08880 PF12431 Transcriptional regulator H9J98_08880 PF00072 Response regulator receiver domain H9J98_08885 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain H9J98_08885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_08885 PF00989 PAS fold H9J98_08885 PF17203 Single cache domain 3 H9J98_08900 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H9J98_08925 PF00696 Amino acid kinase family H9J98_08925 PF13840 ACT domain H9J98_08930 PF06339 Ectoine synthase H9J98_08935 PF00202 Aminotransferase class-III H9J98_08940 PF00583 Acetyltransferase (GNAT) family H9J98_08945 PF02028 BCCT, betaine/carnitine/choline family transporter H9J98_08960 PF00005 ABC transporter H9J98_08960 PF00571 CBS domain H9J98_08965 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_08970 PF04069 Substrate binding domain of ABC-type glycine betaine transport system H9J98_08980 PF00501 AMP-binding enzyme H9J98_09000 PF00486 Transcriptional regulatory protein, C terminal H9J98_09000 PF00072 Response regulator receiver domain H9J98_09005 PF08521 Two-component sensor kinase N-terminal H9J98_09005 PF00512 His Kinase A (phospho-acceptor) domain H9J98_09005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_09010 PF00884 Sulfatase H9J98_09020 PF03741 Integral membrane protein TerC family H9J98_09030 PF04055 Radical SAM superfamily H9J98_09035 PF11230 Protein of unknown function (DUF3029) H9J98_09040 PF01810 LysE type translocator H9J98_09045 PF11871 Domain of unknown function (DUF3391) H9J98_09045 PF01966 HD domain H9J98_09050 PF00990 Diguanylate cyclase, GGDEF domain H9J98_09050 PF00563 EAL domain H9J98_09050 PF03707 Bacterial signalling protein N terminal repeat H9J98_09055 PF02954 Bacterial regulatory protein, Fis family H9J98_09055 PF00072 Response regulator receiver domain H9J98_09055 PF00158 Sigma-54 interaction domain H9J98_09060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_09060 PF00497 Bacterial extracellular solute-binding proteins, family 3 H9J98_09060 PF00512 His Kinase A (phospho-acceptor) domain H9J98_09065 PF00939 Sodium:sulfate symporter transmembrane region H9J98_09080 PF00300 Histidine phosphatase superfamily (branch 1) H9J98_09100 PF17876 Cold shock domain H9J98_09100 PF08461 Ribonuclease R winged-helix domain H9J98_09100 PF08206 Ribonuclease B OB domain H9J98_09100 PF00773 RNB domain H9J98_09100 PF00575 S1 RNA binding domain H9J98_09110 PF00313 'Cold-shock' DNA-binding domain H9J98_09125 PF13936 Helix-turn-helix domain H9J98_09125 PF00665 Integrase core domain H9J98_09160 PF14497 Glutathione S-transferase, C-terminal domain H9J98_09160 PF02798 Glutathione S-transferase, N-terminal domain H9J98_09170 PF04209 homogentisate 1,2-dioxygenase H9J98_09175 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H9J98_09180 PF01546 Peptidase family M20/M25/M40 H9J98_09180 PF07687 Peptidase dimerisation domain H9J98_09185 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle H9J98_09190 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_09195 PF12911 N-terminal TM domain of oligopeptide transport permease C H9J98_09195 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_09200 PF00005 ABC transporter H9J98_09200 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H9J98_09205 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H9J98_09205 PF00005 ABC transporter H9J98_09215 PF13542 Helix-turn-helix domain of transposase family ISL3 H9J98_09215 PF01610 Transposase H9J98_09215 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 H9J98_09220 PF01752 Collagenase H9J98_09220 PF08453 Peptidase family M9 N-terminal H9J98_09230 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_09235 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_09240 PF08402 TOBE domain H9J98_09240 PF00005 ABC transporter H9J98_09245 PF00701 Dihydrodipicolinate synthetase family H9J98_09250 PF02423 Ornithine cyclodeaminase/mu-crystallin family H9J98_09265 PF05544 Proline racemase H9J98_09270 PF00171 Aldehyde dehydrogenase family H9J98_09275 PF00392 Bacterial regulatory proteins, gntR family H9J98_09295 PF05971 RNA methyltransferase H9J98_09300 PF01863 Protein of unknown function DUF45 H9J98_09305 PF04991 LicD family H9J98_09310 PF16363 GDP-mannose 4,6 dehydratase H9J98_09315 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase H9J98_09335 PF03466 LysR substrate binding domain H9J98_09335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_09355 PF00005 ABC transporter H9J98_09360 PF01032 FecCD transport family H9J98_09365 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family H9J98_09380 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase H9J98_09385 PF02654 Cobalamin-5-phosphate synthase H9J98_09390 PF02277 Phosphoribosyltransferase H9J98_09395 PF13460 NAD(P)H-binding H9J98_09400 PF00375 Sodium:dicarboxylate symporter family H9J98_09405 PF00929 Exonuclease H9J98_09405 PF08411 Exonuclease C-terminal H9J98_09410 PF03788 LrgA family H9J98_09415 PF04172 LrgB-like family H9J98_09420 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region H9J98_09420 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region H9J98_09425 PF02222 ATP-grasp domain H9J98_09430 PF05724 Thiopurine S-methyltransferase (TPMT) H9J98_09440 PF00216 Bacterial DNA-binding protein H9J98_09450 PF03483 B3/4 domain H9J98_09450 PF03484 tRNA synthetase B5 domain H9J98_09450 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain H9J98_09450 PF01588 Putative tRNA binding domain H9J98_09450 PF03147 Ferredoxin-fold anticodon binding domain H9J98_09455 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain H9J98_09455 PF01409 tRNA synthetases class II core domain (F) H9J98_09460 PF00990 Diguanylate cyclase, GGDEF domain H9J98_09460 PF17158 Membrane-associated sensor, integral membrane domain H9J98_09490 PF01906 Putative heavy-metal-binding H9J98_09495 PF00453 Ribosomal protein L20 H9J98_09500 PF01632 Ribosomal protein L35 H9J98_09505 PF05198 Translation initiation factor IF-3, N-terminal domain H9J98_09505 PF00707 Translation initiation factor IF-3, C-terminal domain H9J98_09510 PF02824 TGS domain H9J98_09510 PF03129 Anticodon binding domain H9J98_09510 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain H9J98_09510 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) H9J98_09525 PF00392 Bacterial regulatory proteins, gntR family H9J98_09525 PF07702 UTRA domain H9J98_09530 PF01979 Amidohydrolase family H9J98_09535 PF00491 Arginase family H9J98_09540 PF17391 Urocanase N-terminal domain H9J98_09540 PF17392 Urocanase C-terminal domain H9J98_09540 PF01175 Urocanase Rossmann-like domain H9J98_09545 PF00221 Aromatic amino acid lyase H9J98_09555 PF04191 Phospholipid methyltransferase H9J98_09560 PF13183 4Fe-4S dicluster domain H9J98_09560 PF01565 FAD binding domain H9J98_09560 PF02913 FAD linked oxidases, C-terminal domain H9J98_09575 PF05736 OprF membrane domain H9J98_09575 PF00691 OmpA family H9J98_09595 PF01259 SAICAR synthetase H9J98_09600 PF16655 PhoD-like phosphatase, N-terminal domain H9J98_09600 PF09423 PhoD-like phosphatase H9J98_09610 PF02253 Phospholipase A1 H9J98_09615 PF08482 ATP-dependent helicase C-terminal H9J98_09615 PF00271 Helicase conserved C-terminal domain H9J98_09615 PF04408 Helicase associated domain (HA2) H9J98_09615 PF00270 DEAD/DEAH box helicase H9J98_09620 PF03949 Malic enzyme, NAD binding domain H9J98_09620 PF00390 Malic enzyme, N-terminal domain H9J98_09625 PF02698 DUF218 domain H9J98_09630 PF00939 Sodium:sulfate symporter transmembrane region H9J98_09635 PF00072 Response regulator receiver domain H9J98_09635 PF00990 Diguanylate cyclase, GGDEF domain H9J98_09645 PF00266 Aminotransferase class-V H9J98_09655 PF07992 Pyridine nucleotide-disulphide oxidoreductase H9J98_09660 PF00664 ABC transporter transmembrane region H9J98_09660 PF00005 ABC transporter H9J98_09665 PF00005 ABC transporter H9J98_09665 PF00664 ABC transporter transmembrane region H9J98_09670 PF00291 Pyridoxal-phosphate dependent enzyme H9J98_09675 PF00266 Aminotransferase class-V H9J98_09685 PF00512 His Kinase A (phospho-acceptor) domain H9J98_09685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_09685 PF00497 Bacterial extracellular solute-binding proteins, family 3 H9J98_09700 PF04993 TfoX N-terminal domain H9J98_09700 PF04994 TfoX C-terminal domain H9J98_09710 PF03956 Lysine exporter LysO H9J98_09720 PF00282 Pyridoxal-dependent decarboxylase conserved domain H9J98_09725 PF01418 Helix-turn-helix domain, rpiR family H9J98_09725 PF01380 SIS domain H9J98_09735 PF00465 Iron-containing alcohol dehydrogenase H9J98_09740 PF00462 Glutaredoxin H9J98_09745 PF02080 TrkA-C domain H9J98_09745 PF06826 Predicted Permease Membrane Region H9J98_09750 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase H9J98_09750 PF12241 Trans-2-enoyl-CoA reductase catalytic region H9J98_09750 PF07055 Enoyl reductase FAD binding domain H9J98_09755 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H9J98_09755 PF02770 Acyl-CoA dehydrogenase, middle domain H9J98_09755 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H9J98_09755 PF09317 Domain of unknown function (DUF1974) H9J98_09760 PF00440 Bacterial regulatory proteins, tetR family H9J98_09760 PF16295 Tetracyclin repressor-like, C-terminal domain H9J98_09765 PF06965 Na+/H+ antiporter 1 H9J98_09780 PF00005 ABC transporter H9J98_09785 PF01554 MatE H9J98_09790 PF11066 Protein of unknown function (DUF2867) H9J98_09790 PF13460 NAD(P)H-binding H9J98_09795 PF03264 NapC/NirT cytochrome c family, N-terminal region H9J98_09810 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) H9J98_09815 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB H9J98_09825 PF07690 Major Facilitator Superfamily H9J98_09830 PF00849 RNA pseudouridylate synthase H9J98_09830 PF01479 S4 domain H9J98_09835 PF00271 Helicase conserved C-terminal domain H9J98_09835 PF04851 Type III restriction enzyme, res subunit H9J98_09845 PF00486 Transcriptional regulatory protein, C terminal H9J98_09845 PF00072 Response regulator receiver domain H9J98_09850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_09855 PF01386 Ribosomal L25p family H9J98_09870 PF00149 Calcineurin-like phosphoesterase H9J98_09870 PF02872 5'-nucleotidase, C-terminal domain H9J98_09880 PF06945 Protein of unknown function (DUF1289) H9J98_09890 PF00196 Bacterial regulatory proteins, luxR family H9J98_09890 PF00072 Response regulator receiver domain H9J98_09895 PF00512 His Kinase A (phospho-acceptor) domain H9J98_09895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_09905 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster H9J98_09905 PF07992 Pyridine nucleotide-disulphide oxidoreductase H9J98_09915 PF09335 SNARE associated Golgi protein H9J98_09920 PF13416 Bacterial extracellular solute-binding protein H9J98_09925 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_09930 PF00005 ABC transporter H9J98_09935 PF01066 CDP-alcohol phosphatidyltransferase H9J98_09945 PF00158 Sigma-54 interaction domain H9J98_09945 PF01590 GAF domain H9J98_09950 PF03063 Prismane/CO dehydrogenase family H9J98_09955 PF00970 Oxidoreductase FAD-binding domain H9J98_09955 PF00111 2Fe-2S iron-sulfur cluster binding domain H9J98_09955 PF00175 Oxidoreductase NAD-binding domain H9J98_09965 PF00849 RNA pseudouridylate synthase H9J98_09970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9J98_09970 PF00672 HAMP domain H9J98_09970 PF12729 Four helix bundle sensory module for signal transduction H9J98_09975 PF00209 Sodium:neurotransmitter symporter family H9J98_09980 PF13396 Phospholipase_D-nuclease N-terminal H9J98_09980 PF13091 PLD-like domain H9J98_09985 PF01053 Cys/Met metabolism PLP-dependent enzyme H9J98_09990 PF00561 alpha/beta hydrolase fold H9J98_09995 PF03280 Proteobacterial lipase chaperone protein H9J98_10000 PF03352 Methyladenine glycosylase H9J98_10005 PF00873 AcrB/AcrD/AcrF family H9J98_10010 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H9J98_10015 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H9J98_10020 PF04024 PspC domain H9J98_10025 PF06667 Phage shock protein B H9J98_10030 PF04012 PspA/IM30 family H9J98_10035 PF02954 Bacterial regulatory protein, Fis family H9J98_10035 PF00158 Sigma-54 interaction domain H9J98_10040 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle H9J98_10045 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_10050 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_10050 PF12911 N-terminal TM domain of oligopeptide transport permease C H9J98_10055 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H9J98_10055 PF00005 ABC transporter H9J98_10060 PF00005 ABC transporter H9J98_10070 PF01368 DHH family H9J98_10070 PF02833 DHHA2 domain H9J98_10080 PF16874 Glycosyl hydrolase family 36 C-terminal domain H9J98_10080 PF16875 Glycosyl hydrolase family 36 N-terminal domain H9J98_10085 PF01568 Molydopterin dinucleotide binding domain H9J98_10085 PF18364 Molybdopterin oxidoreductase N-terminal domain H9J98_10085 PF00384 Molybdopterin oxidoreductase H9J98_10090 PF03264 NapC/NirT cytochrome c family, N-terminal region H9J98_10095 PF06796 Periplasmic nitrate reductase protein NapE H9J98_10100 PF03649 Uncharacterised protein family (UPF0014) H9J98_10115 PF01226 Formate/nitrite transporter H9J98_10140 PF02698 DUF218 domain H9J98_10145 PF00265 Thymidine kinase H9J98_10150 PF09190 DALR domain H9J98_10150 PF01406 tRNA synthetases class I (C) catalytic domain H9J98_10155 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD H9J98_10160 PF00149 Calcineurin-like phosphoesterase H9J98_10165 PF08668 HDOD domain H9J98_10165 PF00563 EAL domain H9J98_10170 PF02810 SEC-C motif H9J98_10175 PF01502 Phosphoribosyl-AMP cyclohydrolase H9J98_10175 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase H9J98_10180 PF00977 Histidine biosynthesis protein H9J98_10185 PF00977 Histidine biosynthesis protein H9J98_10190 PF00117 Glutamine amidotransferase class-I H9J98_10195 PF08645 Polynucleotide kinase 3 phosphatase H9J98_10195 PF00475 Imidazoleglycerol-phosphate dehydratase H9J98_10200 PF00155 Aminotransferase class I and II H9J98_10205 PF00815 Histidinol dehydrogenase H9J98_10210 PF08029 HisG, C-terminal domain H9J98_10210 PF01634 ATP phosphoribosyltransferase H9J98_10215 PF00072 Response regulator receiver domain H9J98_10215 PF02954 Bacterial regulatory protein, Fis family H9J98_10215 PF00158 Sigma-54 interaction domain H9J98_10225 PF03553 Na+/H+ antiporter family H9J98_10230 PF00816 H-NS histone family H9J98_10240 PF00294 pfkB family carbohydrate kinase H9J98_10255 PF04356 Protein of unknown function (DUF489) H9J98_10260 PF08328 Adenylosuccinate lyase C-terminal H9J98_10260 PF00206 Lyase H9J98_10295 PF00106 short chain dehydrogenase H9J98_10305 PF01435 Peptidase family M48 H9J98_10320 PF08241 Methyltransferase domain H9J98_10325 PF00155 Aminotransferase class I and II H9J98_10330 PF06968 Biotin and Thiamin Synthesis associated domain H9J98_10330 PF04055 Radical SAM superfamily H9J98_10335 PF00202 Aminotransferase class-III H9J98_10340 PF01258 Prokaryotic dksA/traR C4-type zinc finger H9J98_10355 PF02403 Seryl-tRNA synthetase N-terminal domain H9J98_10355 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) H9J98_10360 PF16193 AAA C-terminal domain H9J98_10360 PF12002 MgsA AAA+ ATPase C terminal H9J98_10360 PF00004 ATPase family associated with various cellular activities (AAA) H9J98_10365 PF03548 Outer membrane lipoprotein carrier protein LolA H9J98_10370 PF09397 Ftsk gamma domain H9J98_10370 PF01580 FtsK/SpoIIIE family H9J98_10370 PF13491 4TM region of DNA translocase FtsK/SpoIIIE H9J98_10370 PF17854 FtsK alpha domain H9J98_10375 PF01037 Lrp/AsnC ligand binding domain H9J98_10380 PF01262 Alanine dehydrogenase/PNT, C-terminal domain H9J98_10380 PF05222 Alanine dehydrogenase/PNT, N-terminal domain H9J98_10390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_10390 PF03466 LysR substrate binding domain H9J98_10400 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) H9J98_10405 PF03372 Endonuclease/Exonuclease/phosphatase family H9J98_10415 PF00579 tRNA synthetases class I (W and Y) H9J98_10430 PF00873 AcrB/AcrD/AcrF family H9J98_10435 PF00529 HlyD membrane-fusion protein of T1SS H9J98_10435 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H9J98_10440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9J98_10440 PF00672 HAMP domain H9J98_10440 PF12729 Four helix bundle sensory module for signal transduction H9J98_10450 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 H9J98_10450 PF13542 Helix-turn-helix domain of transposase family ISL3 H9J98_10450 PF01610 Transposase H9J98_10455 PF06610 L-alanine exporter H9J98_10460 PF00072 Response regulator receiver domain H9J98_10460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_10460 PF09308 LuxQ, periplasmic H9J98_10460 PF00512 His Kinase A (phospho-acceptor) domain H9J98_10470 PF03738 Glutathionylspermidine synthase preATP-grasp H9J98_10480 PF03994 Domain of Unknown Function (DUF350) H9J98_10490 PF02445 Quinolinate synthetase A protein H9J98_10495 PF13174 Tetratricopeptide repeat H9J98_10495 PF16331 TolA binding protein trimerisation H9J98_10500 PF00691 OmpA family H9J98_10505 PF07676 WD40-like Beta Propeller Repeat H9J98_10505 PF04052 TolB amino-terminal domain H9J98_10515 PF02472 Biopolymer transport protein ExbD/TolR H9J98_10520 PF01618 MotA/TolQ/ExbB proton channel family H9J98_10525 PF03061 Thioesterase superfamily H9J98_10535 PF08173 Membrane bound YbgT-like protein H9J98_10540 PF02322 Cytochrome bd terminal oxidase subunit II H9J98_10545 PF01654 Cytochrome bd terminal oxidase subunit I H9J98_10550 PF05496 Holliday junction DNA helicase RuvB P-loop domain H9J98_10550 PF05491 RuvB C-terminal winged helix domain H9J98_10550 PF17864 RuvB AAA lid domain H9J98_10555 PF07499 RuvA, C-terminal domain H9J98_10555 PF01330 RuvA N terminal domain H9J98_10560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9J98_10560 PF02203 Tar ligand binding domain homologue H9J98_10560 PF00672 HAMP domain H9J98_10565 PF02075 Crossover junction endodeoxyribonuclease RuvC H9J98_10570 PF02938 GAD domain H9J98_10570 PF00152 tRNA synthetases class II (D, K and N) H9J98_10570 PF01336 OB-fold nucleic acid binding domain H9J98_10575 PF01904 Protein of unknown function DUF72 H9J98_10580 PF13649 Methyltransferase domain H9J98_10585 PF08003 Protein of unknown function (DUF1698) H9J98_10590 PF18030 RimK PreATP-grasp domain H9J98_10590 PF08443 RimK-like ATP-grasp domain H9J98_10600 PF18030 RimK PreATP-grasp domain H9J98_10600 PF08443 RimK-like ATP-grasp domain H9J98_10610 PF04310 MukB N-terminal H9J98_10610 PF16330 MukB hinge domain H9J98_10615 PF04288 MukE-like family H9J98_10620 PF17193 MukF C-terminal domain H9J98_10620 PF03882 MukF winged-helix domain H9J98_10620 PF17192 MukF middle domain H9J98_10625 PF13847 Methyltransferase domain H9J98_10630 PF02698 DUF218 domain H9J98_10635 PF00486 Transcriptional regulatory protein, C terminal H9J98_10635 PF00072 Response regulator receiver domain H9J98_10640 PF02613 Nitrate reductase delta subunit H9J98_10645 PF00356 Bacterial regulatory proteins, lacI family H9J98_10650 PF04993 TfoX N-terminal domain H9J98_10650 PF04994 TfoX C-terminal domain H9J98_10670 PF00534 Glycosyl transferases group 1 H9J98_10670 PF08323 Starch synthase catalytic domain H9J98_10675 PF00483 Nucleotidyl transferase H9J98_10680 PF08272 Topoisomerase I zinc-ribbon-like H9J98_10680 PF01396 Topoisomerase DNA binding C4 zinc finger H9J98_10680 PF01751 Toprim domain H9J98_10680 PF01131 DNA topoisomerase H9J98_10685 PF10692 Protein of unknown function (DUF2498) H9J98_10690 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) H9J98_10700 PF03588 Leucyl/phenylalanyl-tRNA protein transferase H9J98_10705 PF04376 Arginine-tRNA-protein transferase, N terminus H9J98_10705 PF04377 Arginine-tRNA-protein transferase, C terminus H9J98_10710 PF01176 Translation initiation factor 1A / IF-1 H9J98_10720 PF07724 AAA domain (Cdc48 subfamily) H9J98_10720 PF00004 ATPase family associated with various cellular activities (AAA) H9J98_10720 PF02861 Clp amino terminal domain, pathogenicity island component H9J98_10720 PF10431 C-terminal, D2-small domain, of ClpB protein H9J98_10720 PF17871 AAA lid domain H9J98_10725 PF02617 ATP-dependent Clp protease adaptor protein ClpS H9J98_10730 PF00313 'Cold-shock' DNA-binding domain H9J98_10735 PF03971 Monomeric isocitrate dehydrogenase H9J98_10740 PF00849 RNA pseudouridylate synthase H9J98_10745 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) H9J98_10755 PF06733 DEAD_2 H9J98_10755 PF13307 Helicase C-terminal domain H9J98_10760 PF01925 Sulfite exporter TauE/SafE H9J98_10765 PF07445 Primosomal replication protein priC H9J98_10770 PF10689 Protein of unknown function (DUF2496) H9J98_10775 PF03372 Endonuclease/Exonuclease/phosphatase family H9J98_10785 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_10790 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_10795 PF00497 Bacterial extracellular solute-binding proteins, family 3 H9J98_10800 PF00005 ABC transporter H9J98_10815 PF02901 Pyruvate formate lyase-like H9J98_10815 PF01228 Glycine radical H9J98_10825 PF04055 Radical SAM superfamily H9J98_10835 PF03887 YfbU domain H9J98_10840 PF08298 PrkA AAA domain H9J98_10840 PF06798 PrkA serine protein kinase C-terminal domain H9J98_10845 PF04285 Protein of unknown function (DUF444) H9J98_10850 PF04293 SpoVR like protein H9J98_10855 PF02348 Cytidylyltransferase H9J98_10860 PF03966 Trm112p-like protein H9J98_10865 PF02606 Tetraacyldisaccharide-1-P 4'-kinase H9J98_10870 PF00005 ABC transporter H9J98_10870 PF00664 ABC transporter transmembrane region H9J98_10875 PF03772 Competence protein H9J98_10875 PF13567 Domain of unknown function (DUF4131) H9J98_10875 PF00753 Metallo-beta-lactamase superfamily H9J98_10885 PF02687 FtsX-like permease family H9J98_10885 PF12704 MacB-like periplasmic core domain H9J98_10890 PF00005 ABC transporter H9J98_10895 PF02687 FtsX-like permease family H9J98_10895 PF12704 MacB-like periplasmic core domain H9J98_10905 PF00271 Helicase conserved C-terminal domain H9J98_10905 PF02559 CarD-like/TRCF domain H9J98_10905 PF00270 DEAD/DEAH box helicase H9J98_10905 PF17757 UvrB interaction domain H9J98_10905 PF03461 TRCF domain H9J98_10920 PF07992 Pyridine nucleotide-disulphide oxidoreductase H9J98_10925 PF05728 Uncharacterised protein family (UPF0227) H9J98_10935 PF13036 Peptidoglycan-synthase activator LpoB H9J98_10935 PF08139 Prokaryotic membrane lipoprotein lipid attachment site H9J98_10950 PF01230 HIT domain H9J98_10955 PF00672 HAMP domain H9J98_10955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9J98_10965 PF01048 Phosphorylase superfamily H9J98_10970 PF00403 Heavy-metal-associated domain H9J98_10975 PF00478 IMP dehydrogenase / GMP reductase domain H9J98_10975 PF00571 CBS domain H9J98_10985 PF00037 4Fe-4S binding domain H9J98_10985 PF11953 Domain of unknown function (DUF3470) H9J98_10990 PF00588 SpoU rRNA Methylase family H9J98_10990 PF08032 RNA 2'-O ribose methyltransferase substrate binding H9J98_11000 PF17152 Periplasmic sensor domain H9J98_11000 PF00990 Diguanylate cyclase, GGDEF domain H9J98_11010 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain H9J98_11015 PF09619 Type III secretion system lipoprotein chaperone (YscW) H9J98_11030 PF13404 AsnC-type helix-turn-helix domain H9J98_11030 PF01037 Lrp/AsnC ligand binding domain H9J98_11035 PF00291 Pyridoxal-phosphate dependent enzyme H9J98_11080 PF13411 MerR HTH family regulatory protein H9J98_11095 PF13737 Transposase DDE domain H9J98_11110 PF02909 Tetracyclin repressor-like, C-terminal domain H9J98_11110 PF00440 Bacterial regulatory proteins, tetR family H9J98_11115 PF07690 Major Facilitator Superfamily H9J98_11120 PF00440 Bacterial regulatory proteins, tetR family H9J98_11125 PF12833 Helix-turn-helix domain H9J98_11135 PF13737 Transposase DDE domain H9J98_11155 PF07992 Pyridine nucleotide-disulphide oxidoreductase H9J98_11155 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain H9J98_11160 PF00753 Metallo-beta-lactamase superfamily H9J98_11160 PF16123 Hydroxyacylglutathione hydrolase C-terminus H9J98_11170 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain H9J98_11175 PF01883 Iron-sulfur cluster assembly protein H9J98_11175 PF10609 NUBPL iron-transfer P-loop NTPase H9J98_11190 PF02954 Bacterial regulatory protein, Fis family H9J98_11190 PF00072 Response regulator receiver domain H9J98_11190 PF00158 Sigma-54 interaction domain H9J98_11195 PF00210 Ferritin-like domain H9J98_11210 PF00199 Catalase H9J98_11210 PF06628 Catalase-related immune-responsive H9J98_11280 PF00873 AcrB/AcrD/AcrF family H9J98_11285 PF13533 Biotin-lipoyl like H9J98_11335 PF07690 Major Facilitator Superfamily H9J98_11340 PF03601 Conserved hypothetical protein 698 H9J98_11350 PF00501 AMP-binding enzyme H9J98_11350 PF13193 AMP-binding enzyme C-terminal domain H9J98_11355 PF13378 Enolase C-terminal domain-like H9J98_11360 PF00378 Enoyl-CoA hydratase/isomerase H9J98_11365 PF12697 Alpha/beta hydrolase family H9J98_11370 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain H9J98_11370 PF16582 Middle domain of thiamine pyrophosphate H9J98_11370 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain H9J98_11375 PF00425 chorismate binding enzyme H9J98_11380 PF00155 Aminotransferase class I and II H9J98_11390 PF01966 HD domain H9J98_11390 PF13286 Phosphohydrolase-associated domain H9J98_11410 PF13145 PPIC-type PPIASE domain H9J98_11415 PF00216 Bacterial DNA-binding protein H9J98_11420 PF00004 ATPase family associated with various cellular activities (AAA) H9J98_11420 PF05362 Lon protease (S16) C-terminal proteolytic domain H9J98_11420 PF02190 ATP-dependent protease La (LON) substrate-binding domain H9J98_11425 PF07724 AAA domain (Cdc48 subfamily) H9J98_11425 PF10431 C-terminal, D2-small domain, of ClpB protein H9J98_11425 PF06689 ClpX C4-type zinc finger H9J98_11430 PF00574 Clp protease H9J98_11435 PF05698 Bacterial trigger factor protein (TF) C-terminus H9J98_11435 PF05697 Bacterial trigger factor protein (TF) H9J98_11435 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase H9J98_11445 PF02743 Cache domain H9J98_11445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_11445 PF00512 His Kinase A (phospho-acceptor) domain H9J98_11450 PF02954 Bacterial regulatory protein, Fis family H9J98_11450 PF00072 Response regulator receiver domain H9J98_11450 PF00158 Sigma-54 interaction domain H9J98_11460 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component H9J98_11465 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component H9J98_11470 PF03480 Bacterial extracellular solute-binding protein, family 7 H9J98_11475 PF02696 Uncharacterized ACR, YdiU/UPF0061 family H9J98_11490 PF02386 Cation transport protein H9J98_11495 PF02080 TrkA-C domain H9J98_11495 PF02254 TrkA-N domain H9J98_11500 PF00270 DEAD/DEAH box helicase H9J98_11500 PF00271 Helicase conserved C-terminal domain H9J98_11505 PF00571 CBS domain H9J98_11505 PF03471 Transporter associated domain H9J98_11505 PF01595 Cyclin M transmembrane N-terminal domain H9J98_11515 PF04820 Tryptophan halogenase H9J98_11540 PF00550 Phosphopantetheine attachment site H9J98_11545 PF00550 Phosphopantetheine attachment site H9J98_11560 PF07977 FabA-like domain H9J98_11565 PF00535 Glycosyl transferase family 2 H9J98_11570 PF00221 Aromatic amino acid lyase H9J98_11595 PF00109 Beta-ketoacyl synthase, N-terminal domain H9J98_11595 PF02801 Beta-ketoacyl synthase, C-terminal domain H9J98_11600 PF07977 FabA-like domain H9J98_11610 PF00109 Beta-ketoacyl synthase, N-terminal domain H9J98_11610 PF02801 Beta-ketoacyl synthase, C-terminal domain H9J98_11640 PF08463 EcoEI R protein C-terminal H9J98_11640 PF00271 Helicase conserved C-terminal domain H9J98_11640 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) H9J98_11640 PF04851 Type III restriction enzyme, res subunit H9J98_11645 PF01420 Type I restriction modification DNA specificity domain H9J98_11650 PF12161 HsdM N-terminal domain H9J98_11650 PF02384 N-6 DNA Methylase H9J98_11655 PF02796 Helix-turn-helix domain of resolvase H9J98_11655 PF00239 Resolvase, N terminal domain H9J98_11660 PF13538 UvrD-like helicase C-terminal domain H9J98_11660 PF14490 Helix-hairpin-helix containing domain H9J98_11660 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain H9J98_11680 PF00589 Phage integrase family H9J98_11680 PF02899 Phage integrase, N-terminal SAM-like domain H9J98_11690 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain H9J98_11690 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain H9J98_11695 PF07670 Nucleoside recognition H9J98_11695 PF01773 Na+ dependent nucleoside transporter N-terminus H9J98_11695 PF07662 Na+ dependent nucleoside transporter C-terminus H9J98_11700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_11700 PF03466 LysR substrate binding domain H9J98_11705 PF13406 Transglycosylase SLT domain H9J98_11710 PF05166 YcgL domain H9J98_11715 PF05209 Septum formation inhibitor MinC, N-terminal domain H9J98_11715 PF03775 Septum formation inhibitor MinC, C-terminal domain H9J98_11720 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain H9J98_11725 PF03776 Septum formation topological specificity factor MinE H9J98_11730 PF01612 3'-5' exonuclease H9J98_11730 PF00570 HRDC domain H9J98_11735 PF00501 AMP-binding enzyme H9J98_11735 PF13193 AMP-binding enzyme C-terminal domain H9J98_11740 PF00561 alpha/beta hydrolase fold H9J98_11755 PF00814 Glycoprotease family H9J98_11760 PF13307 Helicase C-terminal domain H9J98_11760 PF04851 Type III restriction enzyme, res subunit H9J98_11765 PF01842 ACT domain H9J98_11765 PF00551 Formyl transferase H9J98_11775 PF03485 Arginyl tRNA synthetase N terminal domain H9J98_11775 PF05746 DALR anticodon binding domain H9J98_11775 PF00750 tRNA synthetases class I (R) H9J98_11790 PF07670 Nucleoside recognition H9J98_11790 PF07664 Ferrous iron transport protein B C terminus H9J98_11790 PF02421 Ferrous iron transport protein B H9J98_11790 PF17910 FeoB cytosolic helical domain H9J98_11795 PF04023 FeoA domain H9J98_11800 PF02311 AraC-like ligand binding domain H9J98_11800 PF12833 Helix-turn-helix domain H9J98_11805 PF01297 Zinc-uptake complex component A periplasmic H9J98_11810 PF00005 ABC transporter H9J98_11815 PF00950 ABC 3 transport family H9J98_11820 PF02629 CoA binding domain H9J98_11820 PF00549 CoA-ligase H9J98_11825 PF00549 CoA-ligase H9J98_11825 PF08442 ATP-grasp domain H9J98_11830 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) H9J98_11830 PF00364 Biotin-requiring enzyme H9J98_11830 PF02817 e3 binding domain H9J98_11835 PF16078 2-oxoglutarate dehydrogenase N-terminus H9J98_11835 PF02779 Transketolase, pyrimidine binding domain H9J98_11835 PF16870 2-oxoglutarate dehydrogenase C-terminal H9J98_11835 PF00676 Dehydrogenase E1 component H9J98_11840 PF13085 2Fe-2S iron-sulfur cluster binding domain H9J98_11845 PF02910 Fumarate reductase flavoprotein C-term H9J98_11845 PF00890 FAD binding domain H9J98_11850 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit H9J98_11855 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit H9J98_11860 PF00285 Citrate synthase, C-terminal domain H9J98_11865 PF01784 NIF3 (NGG1p interacting factor 3) H9J98_11875 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I H9J98_11875 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II H9J98_11875 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain H9J98_11875 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III H9J98_11880 PF17206 SeqA protein N-terminal domain H9J98_11880 PF03925 SeqA protein C-terminal domain H9J98_11885 PF12697 Alpha/beta hydrolase family H9J98_11895 PF00258 Flavodoxin H9J98_11905 PF01475 Ferric uptake regulator family H9J98_11910 PF00749 tRNA synthetases class I (E and Q), catalytic domain H9J98_11910 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain H9J98_11915 PF00367 phosphotransferase system, EIIB H9J98_11915 PF02378 Phosphotransferase system, EIIC H9J98_11920 PF01979 Amidohydrolase family H9J98_11925 PF01047 MarR family H9J98_11925 PF00480 ROK family H9J98_11930 PF00999 Sodium/hydrogen exchanger family H9J98_11930 PF02254 TrkA-N domain H9J98_11935 PF13537 Glutamine amidotransferase domain H9J98_11935 PF00733 Asparagine synthase H9J98_11940 PF02357 Transcription termination factor nusG H9J98_11945 PF00854 POT family H9J98_11950 PF00762 Ferrochelatase H9J98_11955 PF05191 Adenylate kinase, active site lid H9J98_11960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_11960 PF00183 Hsp90 protein H9J98_11965 PF00486 Transcriptional regulatory protein, C terminal H9J98_11970 PF17323 Trans-membrane regulatory protein ToxS H9J98_11985 PF12850 Calcineurin-like phosphoesterase superfamily domain H9J98_12000 PF07556 Protein of unknown function (DUF1538) H9J98_12005 PF07556 Protein of unknown function (DUF1538) H9J98_12010 PF01370 NAD dependent epimerase/dehydratase family H9J98_12010 PF08338 Domain of unknown function (DUF1731) H9J98_12015 PF00106 short chain dehydrogenase H9J98_12020 PF00085 Thioredoxin H9J98_12025 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) H9J98_12030 PF01270 Glycosyl hydrolases family 8 H9J98_12035 PF03170 Bacterial cellulose synthase subunit H9J98_12040 PF00535 Glycosyl transferase family 2 H9J98_12040 PF07238 PilZ domain H9J98_12040 PF03552 Cellulose synthase H9J98_12045 PF06564 Cellulose biosynthesis protein BcsQ H9J98_12055 PF10995 Cellulose biosynthesis GIL H9J98_12065 PF11658 Cellulose biosynthesis protein BcsG H9J98_12070 PF01145 SPFH domain / Band 7 family H9J98_12070 PF16200 C-terminal region of band_7 H9J98_12085 PF03573 outer membrane porin, OprD family H9J98_12090 PF00533 BRCA1 C Terminus (BRCT) domain H9J98_12090 PF01653 NAD-dependent DNA ligase adenylation domain H9J98_12090 PF03120 NAD-dependent DNA ligase OB-fold domain H9J98_12090 PF03119 NAD-dependent DNA ligase C4 zinc finger domain H9J98_12090 PF12826 Helix-hairpin-helix motif H9J98_12095 PF04354 ZipA, C-terminal FtsZ-binding domain H9J98_12105 PF00291 Pyridoxal-phosphate dependent enzyme H9J98_12110 PF00381 PTS HPr component phosphorylation site H9J98_12115 PF05524 PEP-utilising enzyme, N-terminal H9J98_12115 PF00391 PEP-utilising enzyme, mobile domain H9J98_12115 PF02896 PEP-utilising enzyme, TIM barrel domain H9J98_12120 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 H9J98_12125 PF00669 Bacterial flagellin N-terminal helical region H9J98_12125 PF00700 Bacterial flagellin C-terminal helical region H9J98_12125 PF07196 Flagellin hook IN motif H9J98_12130 PF07196 Flagellin hook IN motif H9J98_12130 PF00700 Bacterial flagellin C-terminal helical region H9J98_12130 PF00669 Bacterial flagellin N-terminal helical region H9J98_12135 PF00700 Bacterial flagellin C-terminal helical region H9J98_12135 PF07196 Flagellin hook IN motif H9J98_12135 PF00669 Bacterial flagellin N-terminal helical region H9J98_12140 PF00669 Bacterial flagellin N-terminal helical region H9J98_12145 PF07196 Flagellin hook IN motif H9J98_12145 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H9J98_12150 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase H9J98_12150 PF10135 Rod binding protein H9J98_12155 PF02119 Flagellar P-ring protein H9J98_12160 PF02107 Flagellar L-ring protein H9J98_12165 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H9J98_12165 PF00460 Flagella basal body rod protein H9J98_12170 PF00460 Flagella basal body rod protein H9J98_12170 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H9J98_12175 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H9J98_12175 PF00460 Flagella basal body rod protein H9J98_12175 PF07559 Flagellar basal body protein FlaE H9J98_12180 PF03963 Flagellar hook capping protein - N-terminal region H9J98_12180 PF13860 FlgD Ig-like domain H9J98_12180 PF13861 FlgD Tudor-like domain H9J98_12185 PF00460 Flagella basal body rod protein H9J98_12185 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H9J98_12190 PF00460 Flagella basal body rod protein H9J98_12195 PF01739 CheR methyltransferase, SAM binding domain H9J98_12195 PF03705 CheR methyltransferase, all-alpha domain H9J98_12200 PF01584 CheW-like domain H9J98_12200 PF00072 Response regulator receiver domain H9J98_12245 PF00691 OmpA family H9J98_12245 PF01389 OmpA-like transmembrane domain H9J98_12250 PF00749 tRNA synthetases class I (E and Q), catalytic domain H9J98_12255 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) H9J98_12260 PF13609 Gram-negative porin H9J98_12265 PF00403 Heavy-metal-associated domain H9J98_12280 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain H9J98_12280 PF00728 Glycosyl hydrolase family 20, catalytic domain H9J98_12280 PF02838 Glycosyl hydrolase family 20, domain 2 H9J98_12280 PF03173 Putative carbohydrate binding domain H9J98_12300 PF01713 Smr domain H9J98_12305 PF00849 RNA pseudouridylate synthase H9J98_12305 PF01479 S4 domain H9J98_12310 PF04073 Aminoacyl-tRNA editing domain H9J98_12315 PF02872 5'-nucleotidase, C-terminal domain H9J98_12315 PF00149 Calcineurin-like phosphoesterase H9J98_12320 PF00793 DAHP synthetase I family H9J98_12325 PF13369 Transglutaminase-like superfamily H9J98_12330 PF04247 Invasion gene expression up-regulator, SirB H9J98_12335 PF17827 PrmC N-terminal domain H9J98_12335 PF13847 Methyltransferase domain H9J98_12340 PF03462 PCRF domain H9J98_12340 PF00472 RF-1 domain H9J98_12345 PF01488 Shikimate / quinate 5-dehydrogenase H9J98_12345 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain H9J98_12345 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain H9J98_12350 PF03550 Outer membrane lipoprotein LolB H9J98_12355 PF08544 GHMP kinases C terminal H9J98_12355 PF00288 GHMP kinases N terminal domain H9J98_12360 PF14572 Phosphoribosyl synthetase-associated domain H9J98_12360 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase H9J98_12365 PF01195 Peptidyl-tRNA hydrolase H9J98_12370 PF01926 50S ribosome-binding GTPase H9J98_12370 PF06071 Protein of unknown function (DUF933) H9J98_12485 PF01494 FAD binding domain H9J98_12490 PF04055 Radical SAM superfamily H9J98_12490 PF00919 Uncharacterized protein family UPF0004 H9J98_12490 PF01938 TRAM domain H9J98_12495 PF02562 PhoH-like protein H9J98_12500 PF02130 Uncharacterized protein family UPF0054 H9J98_12505 PF00571 CBS domain H9J98_12505 PF03471 Transporter associated domain H9J98_12510 PF00795 Carbon-nitrogen hydrolase H9J98_12515 PF07295 Zinc-ribbon containing domain H9J98_12520 PF08264 Anticodon-binding domain of tRNA H9J98_12520 PF13603 Leucyl-tRNA synthetase, Domain 2 H9J98_12520 PF00133 tRNA synthetases class I (I, L, M and V) H9J98_12525 PF04390 Lipopolysaccharide-assembly H9J98_12530 PF06144 DNA polymerase III, delta subunit H9J98_12530 PF14840 Processivity clamp loader gamma complex DNA pol III C-term H9J98_12540 PF02590 Predicted SPOUT methyltransferase H9J98_12545 PF03717 Penicillin-binding Protein dimerisation domain H9J98_12545 PF00905 Penicillin binding protein transpeptidase domain H9J98_12550 PF01098 Cell cycle protein H9J98_12555 PF03330 Lytic transglycolase H9J98_12555 PF05036 Sporulation related domain H9J98_12560 PF07943 Penicillin-binding protein 5, C-terminal domain H9J98_12560 PF00768 D-alanyl-D-alanine carboxypeptidase H9J98_12565 PF04359 Protein of unknown function (DUF493) H9J98_12570 PF03099 Biotin/lipoate A/B protein ligase family H9J98_12575 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family H9J98_12575 PF04055 Radical SAM superfamily H9J98_12580 PF00464 Serine hydroxymethyltransferase H9J98_12585 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) H9J98_12585 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 H9J98_12595 PF00128 Alpha amylase, catalytic domain H9J98_12595 PF16657 Maltogenic Amylase, C-terminal domain H9J98_12600 PF02378 Phosphotransferase system, EIIC H9J98_12600 PF00367 phosphotransferase system, EIIB H9J98_12605 PF00356 Bacterial regulatory proteins, lacI family H9J98_12615 PF00005 ABC transporter H9J98_12615 PF09383 NIL domain H9J98_12620 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_12625 PF03180 NLPA lipoprotein H9J98_12630 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) H9J98_12635 PF07348 Syd protein (SUKH-2) H9J98_12640 PF14489 QueF-like protein H9J98_12640 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term H9J98_12650 PF00990 Diguanylate cyclase, GGDEF domain H9J98_12655 PF03641 Possible lysine decarboxylase H9J98_12655 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases H9J98_12655 PF11892 Domain of unknown function (DUF3412) H9J98_12660 PF01367 5'-3' exonuclease, C-terminal SAM fold H9J98_12660 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain H9J98_12665 PF01223 DNA/RNA non-specific endonuclease H9J98_12670 PF18125 RlmM ferredoxin-like domain H9J98_12670 PF01728 FtsJ-like methyltransferase H9J98_12675 PF04241 Protein of unknown function (DUF423) H9J98_12685 PF03466 LysR substrate binding domain H9J98_12685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_12690 PF02568 Thiamine biosynthesis protein (ThiI) H9J98_12690 PF02926 THUMP domain H9J98_12695 PF00691 OmpA family H9J98_12700 PF01618 MotA/TolQ/ExbB proton channel family H9J98_12705 PF02609 Exonuclease VII small subunit H9J98_12710 PF00348 Polyprenyl synthetase H9J98_12715 PF13292 1-deoxy-D-xylulose-5-phosphate synthase H9J98_12715 PF02780 Transketolase, C-terminal domain H9J98_12715 PF02779 Transketolase, pyrimidine binding domain H9J98_12720 PF04608 Phosphatidylglycerophosphatase A H9J98_12725 PF02769 AIR synthase related protein, C-terminal domain H9J98_12725 PF00586 AIR synthase related protein, N-terminal domain H9J98_12730 PF01029 NusB family H9J98_12735 PF00885 6,7-dimethyl-8-ribityllumazine synthase H9J98_12740 PF00925 GTP cyclohydrolase II H9J98_12740 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase H9J98_12745 PF00677 Lumazine binding domain H9J98_12750 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region H9J98_12750 PF01872 RibD C-terminal domain H9J98_12755 PF03477 ATP cone domain H9J98_12760 PF00171 Aldehyde dehydrogenase family H9J98_12765 PF01472 PUA domain H9J98_12765 PF00696 Amino acid kinase family H9J98_12770 PF07417 Sigma factor-binding transcriptional regulator Crl H9J98_12775 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) H9J98_12780 PF00156 Phosphoribosyl transferase domain H9J98_12785 PF00860 Permease family H9J98_12790 PF07687 Peptidase dimerisation domain H9J98_12790 PF01546 Peptidase family M20/M25/M40 H9J98_12815 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain H9J98_12815 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal H9J98_12815 PF02769 AIR synthase related protein, C-terminal domain H9J98_12820 PF01464 Transglycosylase SLT domain H9J98_12820 PF00497 Bacterial extracellular solute-binding proteins, family 3 H9J98_12825 PF14437 MafB19-like deaminase H9J98_12830 PF03806 AbgT putative transporter family H9J98_12850 PF07963 Prokaryotic N-terminal methylation motif H9J98_12850 PF00114 Pilin (bacterial filament) H9J98_12855 PF07963 Prokaryotic N-terminal methylation motif H9J98_12855 PF00114 Pilin (bacterial filament) H9J98_12860 PF00684 DnaJ central domain H9J98_12860 PF00226 DnaJ domain H9J98_12860 PF01556 DnaJ C terminal domain H9J98_12865 PF00012 Hsp70 protein H9J98_12875 PF00375 Sodium:dicarboxylate symporter family H9J98_12880 PF01025 GrpE H9J98_12885 PF01513 ATP-NAD kinase H9J98_12895 PF02463 RecF/RecN/SMC N terminal domain H9J98_12900 PF04355 SmpA / OmlA family H9J98_12905 PF03658 RnfH family Ubiquitin H9J98_12910 PF03364 Polyketide cyclase / dehydrase and lipid transport H9J98_12915 PF01668 SmpB protein H9J98_12925 PF13356 Arm DNA-binding domain H9J98_12925 PF00589 Phage integrase family H9J98_12940 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) H9J98_12940 PF04851 Type III restriction enzyme, res subunit H9J98_12940 PF08463 EcoEI R protein C-terminal H9J98_12940 PF00271 Helicase conserved C-terminal domain H9J98_12945 PF01555 DNA methylase H9J98_12965 PF12161 HsdM N-terminal domain H9J98_12965 PF02384 N-6 DNA Methylase H9J98_12970 PF01420 Type I restriction modification DNA specificity domain H9J98_12985 PF02796 Helix-turn-helix domain of resolvase H9J98_12985 PF00239 Resolvase, N terminal domain H9J98_13040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_13040 PF03466 LysR substrate binding domain H9J98_13045 PF00583 Acetyltransferase (GNAT) family H9J98_13045 PF00795 Carbon-nitrogen hydrolase H9J98_13065 PF00202 Aminotransferase class-III H9J98_13070 PF01053 Cys/Met metabolism PLP-dependent enzyme H9J98_13075 PF07969 Amidohydrolase family H9J98_13090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_13090 PF03466 LysR substrate binding domain H9J98_13095 PF01266 FAD dependent oxidoreductase H9J98_13100 PF01235 Sodium:alanine symporter family H9J98_13110 PF01184 GPR1/FUN34/yaaH family H9J98_13115 PF06483 Chitinase C H9J98_13115 PF00704 Glycosyl hydrolases family 18 H9J98_13120 PF03553 Na+/H+ antiporter family H9J98_13125 PF00117 Glutamine amidotransferase class-I H9J98_13125 PF00958 GMP synthase C terminal domain H9J98_13125 PF02540 NAD synthase H9J98_13130 PF00571 CBS domain H9J98_13130 PF00478 IMP dehydrogenase / GMP reductase domain H9J98_13135 PF13742 OB-fold nucleic acid binding domain H9J98_13135 PF02601 Exonuclease VII, large subunit H9J98_13150 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal H9J98_13150 PF01926 50S ribosome-binding GTPase H9J98_13155 PF13360 PQQ-like domain H9J98_13160 PF09976 Tetratricopeptide repeat-like domain H9J98_13165 PF13393 Histidyl-tRNA synthetase H9J98_13165 PF03129 Anticodon binding domain H9J98_13170 PF04551 GcpE protein H9J98_13175 PF13464 Domain of unknown function (DUF4115) H9J98_13180 PF04055 Radical SAM superfamily H9J98_13185 PF00334 Nucleoside diphosphate kinase H9J98_13190 PF12404 Peptidase H9J98_13190 PF00883 Cytosol aminopeptidase family, catalytic domain H9J98_13195 PF04384 Iron-sulphur cluster assembly H9J98_13200 PF00111 2Fe-2S iron-sulfur cluster binding domain H9J98_13205 PF00012 Hsp70 protein H9J98_13210 PF00226 DnaJ domain H9J98_13210 PF07743 HSCB C-terminal oligomerisation domain H9J98_13215 PF01521 Iron-sulphur cluster biosynthesis H9J98_13220 PF01592 NifU-like N terminal domain H9J98_13225 PF00266 Aminotransferase class-V H9J98_13230 PF02082 Transcriptional regulator H9J98_13235 PF00588 SpoU rRNA Methylase family H9J98_13240 PF00459 Inositol monophosphatase family H9J98_13245 PF07549 SecD/SecF GG Motif H9J98_13245 PF02355 Protein export membrane protein H9J98_13250 PF02355 Protein export membrane protein H9J98_13250 PF07549 SecD/SecF GG Motif H9J98_13250 PF13721 SecD export protein N-terminal TM region H9J98_13255 PF02699 Preprotein translocase subunit H9J98_13260 PF01702 Queuine tRNA-ribosyltransferase H9J98_13265 PF02547 Queuosine biosynthesis protein H9J98_13275 PF00571 CBS domain H9J98_13280 PF00463 Isocitrate lyase family H9J98_13285 PF01274 Malate synthase H9J98_13290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_13290 PF03466 LysR substrate binding domain H9J98_13295 PF10417 C-terminal domain of 1-Cys peroxiredoxin H9J98_13295 PF00578 AhpC/TSA family H9J98_13300 PF03932 CutC family H9J98_13305 PF03976 Polyphosphate kinase 2 (PPK2) H9J98_13310 PF01895 PhoU domain H9J98_13315 PF00005 ABC transporter H9J98_13320 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_13325 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_13330 PF02503 Polyphosphate kinase middle domain H9J98_13330 PF13090 Polyphosphate kinase C-terminal domain 2 H9J98_13330 PF17941 Polyphosphate kinase C-terminal domain 1 H9J98_13330 PF13089 Polyphosphate kinase N-terminal domain H9J98_13335 PF02541 Ppx/GppA phosphatase family H9J98_13340 PF12849 PBP superfamily domain H9J98_13345 PF11808 Phosphate regulon sensor protein PhoR H9J98_13345 PF00989 PAS fold H9J98_13345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_13345 PF00512 His Kinase A (phospho-acceptor) domain H9J98_13350 PF00486 Transcriptional regulatory protein, C terminal H9J98_13350 PF00072 Response regulator receiver domain H9J98_13355 PF04381 Putative exonuclease, RdgC H9J98_13360 PF16325 Peptidase family U32 C-terminal domain H9J98_13360 PF01136 Peptidase family U32 H9J98_13365 PF00037 4Fe-4S binding domain H9J98_13375 PF03411 Penicillin-insensitive murein endopeptidase H9J98_13420 PF02861 Clp amino terminal domain, pathogenicity island component H9J98_13420 PF10431 C-terminal, D2-small domain, of ClpB protein H9J98_13420 PF17871 AAA lid domain H9J98_13420 PF07724 AAA domain (Cdc48 subfamily) H9J98_13420 PF00004 ATPase family associated with various cellular activities (AAA) H9J98_13425 PF02578 Multi-copper polyphenol oxidoreductase laccase H9J98_13430 PF00849 RNA pseudouridylate synthase H9J98_13430 PF01479 S4 domain H9J98_13435 PF13525 Outer membrane lipoprotein H9J98_13440 PF01464 Transglycosylase SLT domain H9J98_13445 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein H9J98_13450 PF00800 Prephenate dehydratase H9J98_13450 PF01817 Chorismate mutase type II H9J98_13455 PF01931 Protein of unknown function DUF84 H9J98_13460 PF01371 Trp repressor protein H9J98_13465 PF01464 Transglycosylase SLT domain H9J98_13465 PF14718 Soluble lytic murein transglycosylase L domain H9J98_13470 PF00005 ABC transporter H9J98_13470 PF12848 ABC transporter H9J98_13475 PF07238 PilZ domain H9J98_13480 PF04225 Opacity-associated protein A LysM-like domain H9J98_13480 PF01551 Peptidase family M23 H9J98_13485 PF02153 Prephenate dehydrogenase H9J98_13485 PF01817 Chorismate mutase type II H9J98_13490 PF00793 DAHP synthetase I family H9J98_13495 PF00933 Glycosyl hydrolase family 3 N terminal domain H9J98_13500 PF03702 Anhydro-N-acetylmuramic acid kinase H9J98_13505 PF13580 SIS domain H9J98_13520 PF02554 Carbon starvation protein CstA H9J98_13525 PF07694 5TMR of 5TMR-LYT H9J98_13525 PF06580 Histidine kinase H9J98_13530 PF00072 Response regulator receiver domain H9J98_13530 PF04397 LytTr DNA-binding domain H9J98_13535 PF02401 LytB protein H9J98_13540 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase H9J98_13545 PF01252 Signal peptidase (SPase) II H9J98_13550 PF08264 Anticodon-binding domain of tRNA H9J98_13550 PF00133 tRNA synthetases class I (I, L, M and V) H9J98_13550 PF06827 Zinc finger found in FPG and IleRS H9J98_13555 PF06574 FAD synthetase H9J98_13555 PF01687 Riboflavin kinase H9J98_13560 PF03023 Lipid II flippase MurJ H9J98_13565 PF01649 Ribosomal protein S20 H9J98_13570 PF01022 Bacterial regulatory protein, arsR family H9J98_13575 PF03466 LysR substrate binding domain H9J98_13575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_13580 PF02690 Na+/Pi-cotransporter H9J98_13590 PF00303 Thymidylate synthase H9J98_13595 PF01790 Prolipoprotein diacylglyceryl transferase H9J98_13600 PF01925 Sulfite exporter TauE/SafE H9J98_13605 PF00391 PEP-utilising enzyme, mobile domain H9J98_13605 PF02896 PEP-utilising enzyme, TIM barrel domain H9J98_13605 PF05524 PEP-utilising enzyme, N-terminal H9J98_13605 PF01590 GAF domain H9J98_13610 PF00293 NUDIX domain H9J98_13615 PF02976 DNA mismatch repair enzyme MutH H9J98_13625 PF00248 Aldo/keto reductase family H9J98_13635 PF02954 Bacterial regulatory protein, Fis family H9J98_13635 PF00072 Response regulator receiver domain H9J98_13635 PF00158 Sigma-54 interaction domain H9J98_13640 PF01336 OB-fold nucleic acid binding domain H9J98_13640 PF00152 tRNA synthetases class II (D, K and N) H9J98_13650 PF17768 RecJ OB domain H9J98_13650 PF02272 DHHA1 domain H9J98_13650 PF01368 DHH family H9J98_13655 PF10411 Disulfide bond isomerase protein N-terminus H9J98_13655 PF13098 Thioredoxin-like domain H9J98_13660 PF00589 Phage integrase family H9J98_13660 PF02899 Phage integrase, N-terminal SAM-like domain H9J98_13665 PF00258 Flavodoxin H9J98_13670 PF05525 Branched-chain amino acid transport protein H9J98_13675 PF05175 Methyltransferase small domain H9J98_13680 PF00270 DEAD/DEAH box helicase H9J98_13680 PF00271 Helicase conserved C-terminal domain H9J98_13685 PF03883 Peroxide stress protein YaaA H9J98_13690 PF01235 Sodium:alanine symporter family H9J98_13705 PF03167 Uracil DNA glycosylase superfamily H9J98_13710 PF01261 Xylose isomerase-like TIM barrel H9J98_13715 PF01228 Glycine radical H9J98_13720 PF14821 Threonine synthase N terminus H9J98_13720 PF00291 Pyridoxal-phosphate dependent enzyme H9J98_13725 PF08544 GHMP kinases C terminal H9J98_13725 PF00288 GHMP kinases N terminal domain H9J98_13730 PF00696 Amino acid kinase family H9J98_13730 PF01842 ACT domain H9J98_13730 PF13840 ACT domain H9J98_13730 PF03447 Homoserine dehydrogenase, NAD binding domain H9J98_13730 PF00742 Homoserine dehydrogenase H9J98_13740 PF03737 Aldolase/RraA H9J98_13750 PF00486 Transcriptional regulatory protein, C terminal H9J98_13750 PF00072 Response regulator receiver domain H9J98_13760 PF00072 Response regulator receiver domain H9J98_13760 PF00989 PAS fold H9J98_13760 PF01627 Hpt domain H9J98_13760 PF18415 Histidine kinase receptor ArcB trans-membrane domain H9J98_13760 PF00512 His Kinase A (phospho-acceptor) domain H9J98_13760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_13765 PF00990 Diguanylate cyclase, GGDEF domain H9J98_13765 PF01590 GAF domain H9J98_13765 PF00360 Phytochrome region H9J98_13765 PF00563 EAL domain H9J98_13770 PF16199 Radical_SAM C-terminal domain H9J98_13770 PF04055 Radical SAM superfamily H9J98_13775 PF00310 Glutamine amidotransferases class-II H9J98_13775 PF01493 GXGXG motif H9J98_13775 PF04898 Glutamate synthase central domain H9J98_13775 PF01645 Conserved region in glutamate synthase H9J98_13780 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster H9J98_13780 PF07992 Pyridine nucleotide-disulphide oxidoreductase H9J98_13785 PF00310 Glutamine amidotransferases class-II H9J98_13785 PF04898 Glutamate synthase central domain H9J98_13785 PF01645 Conserved region in glutamate synthase H9J98_13785 PF01493 GXGXG motif H9J98_13790 PF07992 Pyridine nucleotide-disulphide oxidoreductase H9J98_13790 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster H9J98_13800 PF01048 Phosphorylase superfamily H9J98_13805 PF17113 Regulatory signalling modulator protein AmpE H9J98_13805 PF03186 CobD/Cbib protein H9J98_13810 PF01497 Periplasmic binding protein H9J98_13815 PF03458 UPF0126 domain H9J98_13820 PF03466 LysR substrate binding domain H9J98_13820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_13825 PF01925 Sulfite exporter TauE/SafE H9J98_13840 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain H9J98_13840 PF02142 MGS-like domain H9J98_13840 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain H9J98_13845 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain H9J98_13845 PF00117 Glutamine amidotransferase class-I H9J98_13850 PF05173 Dihydrodipicolinate reductase, C-terminus H9J98_13850 PF01113 Dihydrodipicolinate reductase, N-terminus H9J98_13855 PF00293 NUDIX domain H9J98_13860 PF07517 SecA DEAD-like domain H9J98_13860 PF01043 SecA preprotein cross-linking domain H9J98_13860 PF07516 SecA Wing and Scaffold domain H9J98_13860 PF02810 SEC-C motif H9J98_13870 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase H9J98_13875 PF12327 FtsZ family, C-terminal domain H9J98_13875 PF00091 Tubulin/FtsZ family, GTPase domain H9J98_13880 PF02491 SHS2 domain inserted in FTSA H9J98_13885 PF08478 POTRA domain, FtsQ-type H9J98_13885 PF03799 Cell division protein FtsQ H9J98_13890 PF01225 Mur ligase family, catalytic domain H9J98_13890 PF02875 Mur ligase family, glutamate ligase domain H9J98_13890 PF08245 Mur ligase middle domain H9J98_13895 PF04101 Glycosyltransferase family 28 C-terminal domain H9J98_13895 PF03033 Glycosyltransferase family 28 N-terminal domain H9J98_13900 PF01098 Cell cycle protein H9J98_13905 PF02875 Mur ligase family, glutamate ligase domain H9J98_13905 PF08245 Mur ligase middle domain H9J98_13910 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 H9J98_13910 PF00953 Glycosyl transferase family 4 H9J98_13915 PF08245 Mur ligase middle domain H9J98_13915 PF02875 Mur ligase family, glutamate ligase domain H9J98_13915 PF01225 Mur ligase family, catalytic domain H9J98_13920 PF02875 Mur ligase family, glutamate ligase domain H9J98_13920 PF08245 Mur ligase middle domain H9J98_13920 PF01225 Mur ligase family, catalytic domain H9J98_13925 PF00905 Penicillin binding protein transpeptidase domain H9J98_13925 PF03717 Penicillin-binding Protein dimerisation domain H9J98_13930 PF04999 Cell division protein FtsL H9J98_13935 PF01795 MraW methylase family H9J98_13945 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases H9J98_13950 PF04348 LppC putative lipoprotein H9J98_13955 PF02021 Uncharacterised protein family UPF0102 H9J98_13960 PF13580 SIS domain H9J98_13965 PF04972 BON domain H9J98_13970 PF04386 Stringent starvation protein B H9J98_13975 PF00043 Glutathione S-transferase, C-terminal domain H9J98_13975 PF02798 Glutathione S-transferase, N-terminal domain H9J98_13980 PF02167 Cytochrome C1 family H9J98_13985 PF00032 Cytochrome b(C-terminal)/b6/petD H9J98_13985 PF00033 Cytochrome b/b6/petB H9J98_13990 PF00355 Rieske [2Fe-2S] domain H9J98_13990 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal H9J98_13995 PF00380 Ribosomal protein S9/S16 H9J98_14000 PF00572 Ribosomal protein L13 H9J98_14005 PF03969 AFG1-like ATPase H9J98_14010 PF06295 Protein of unknown function (DUF1043) H9J98_14015 PF00595 PDZ domain H9J98_14020 PF13180 PDZ domain H9J98_14025 PF03989 DNA gyrase C-terminal domain, beta-propeller H9J98_14025 PF00521 DNA gyrase/topoisomerase IV, subunit A H9J98_14030 PF00204 DNA gyrase B H9J98_14030 PF01751 Toprim domain H9J98_14030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_14030 PF00986 DNA gyrase B subunit, carboxyl terminus H9J98_14035 PF05728 Uncharacterised protein family (UPF0227) H9J98_14040 PF00149 Calcineurin-like phosphoesterase H9J98_14045 PF06853 Protein of unknown function (DUF1249) H9J98_14050 PF00293 NUDIX domain H9J98_14055 PF02321 Outer membrane efflux protein H9J98_14060 PF00294 pfkB family carbohydrate kinase H9J98_14060 PF01467 Cytidylyltransferase-like H9J98_14065 PF08335 GlnD PII-uridylyltransferase H9J98_14065 PF03710 Glutamate-ammonia ligase adenylyltransferase H9J98_14070 PF00672 HAMP domain H9J98_14070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9J98_14080 PF01928 CYTH domain H9J98_14085 PF01865 Protein of unknown function DUF47 H9J98_14090 PF01384 Phosphate transporter family H9J98_14095 PF08239 Bacterial SH3 domain H9J98_14105 PF13401 AAA domain H9J98_14105 PF01471 Putative peptidoglycan binding domain H9J98_14110 PF01966 HD domain H9J98_14110 PF01743 Poly A polymerase head domain H9J98_14110 PF12627 Probable RNA and SrmB- binding site of polymerase A H9J98_14115 PF02673 Bacitracin resistance protein BacA H9J98_14120 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) H9J98_14125 PF02152 Dihydroneopterin aldolase H9J98_14130 PF02660 Glycerol-3-phosphate acyltransferase H9J98_14135 PF12697 Alpha/beta hydrolase family H9J98_14140 PF00814 Glycoprotease family H9J98_14145 PF01165 Ribosomal protein S21 H9J98_14150 PF09424 Yqey-like protein H9J98_14155 PF01807 CHC2 zinc finger H9J98_14155 PF08275 DNA primase catalytic core, N-terminal domain H9J98_14155 PF08278 DNA primase DnaG DnaB-binding H9J98_14155 PF10410 DnaB-helicase binding domain of primase H9J98_14160 PF04539 Sigma-70 region 3 H9J98_14160 PF03979 Sigma-70 factor, region 1.1 H9J98_14160 PF00140 Sigma-70 factor, region 1.2 H9J98_14160 PF04542 Sigma-70 region 2 H9J98_14160 PF04545 Sigma-70, region 4 H9J98_14160 PF04546 Sigma-70, non-essential region H9J98_14175 PF13657 HipA N-terminal domain H9J98_14175 PF07804 HipA-like C-terminal domain H9J98_14210 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) H9J98_14210 PF00271 Helicase conserved C-terminal domain H9J98_14210 PF08463 EcoEI R protein C-terminal H9J98_14210 PF04851 Type III restriction enzyme, res subunit H9J98_14225 PF12161 HsdM N-terminal domain H9J98_14225 PF02384 N-6 DNA Methylase H9J98_14230 PF01420 Type I restriction modification DNA specificity domain H9J98_14245 PF00239 Resolvase, N terminal domain H9J98_14245 PF02796 Helix-turn-helix domain of resolvase H9J98_14255 PF13737 Transposase DDE domain H9J98_14265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9J98_14265 PF08447 PAS fold H9J98_14295 PF03180 NLPA lipoprotein H9J98_14325 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 H9J98_14325 PF02378 Phosphotransferase system, EIIC H9J98_14325 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit H9J98_14330 PF01232 Mannitol dehydrogenase Rossmann domain H9J98_14330 PF08125 Mannitol dehydrogenase C-terminal domain H9J98_14335 PF05068 Mannitol repressor H9J98_14340 PF00989 PAS fold H9J98_14340 PF02954 Bacterial regulatory protein, Fis family H9J98_14340 PF00158 Sigma-54 interaction domain H9J98_14345 PF05524 PEP-utilising enzyme, N-terminal H9J98_14345 PF00391 PEP-utilising enzyme, mobile domain H9J98_14345 PF02896 PEP-utilising enzyme, TIM barrel domain H9J98_14350 PF02734 DAK2 domain H9J98_14355 PF02733 Dak1 domain H9J98_14360 PF00465 Iron-containing alcohol dehydrogenase H9J98_14365 PF00512 His Kinase A (phospho-acceptor) domain H9J98_14365 PF00672 HAMP domain H9J98_14365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_14370 PF00486 Transcriptional regulatory protein, C terminal H9J98_14370 PF00072 Response regulator receiver domain H9J98_14420 PF01389 OmpA-like transmembrane domain H9J98_14420 PF00691 OmpA family H9J98_14425 PF00872 Transposase, Mutator family H9J98_14435 PF13936 Helix-turn-helix domain H9J98_14435 PF00665 Integrase core domain H9J98_14450 PF18623 TnsE C-terminal domain H9J98_14455 PF06527 TniQ H9J98_14455 PF15978 Tn7-like transposition protein D H9J98_14460 PF13401 AAA domain H9J98_14460 PF11426 Tn7 transposition regulator TnsC H9J98_14465 PF00665 Integrase core domain H9J98_14470 PF08721 TnsA endonuclease C terminal H9J98_14470 PF08722 TnsA endonuclease N terminal H9J98_14475 PF01380 SIS domain H9J98_14480 PF00455 DeoR C terminal sensor domain H9J98_14480 PF08220 DeoR-like helix-turn-helix domain H9J98_14485 PF00224 Pyruvate kinase, barrel domain H9J98_14485 PF02887 Pyruvate kinase, alpha/beta domain H9J98_14495 PF00990 Diguanylate cyclase, GGDEF domain H9J98_14500 PF10369 Small subunit of acetolactate synthase H9J98_14505 PF00205 Thiamine pyrophosphate enzyme, central domain H9J98_14505 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain H9J98_14505 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain H9J98_14510 PF00501 AMP-binding enzyme H9J98_14515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_14515 PF03466 LysR substrate binding domain H9J98_14525 PF01569 PAP2 superfamily H9J98_14535 PF00682 HMGL-like H9J98_14535 PF08502 LeuA allosteric (dimerisation) domain H9J98_14540 PF00180 Isocitrate/isopropylmalate dehydrogenase H9J98_14545 PF00330 Aconitase family (aconitate hydratase) H9J98_14550 PF00694 Aconitase C-terminal domain H9J98_14560 PF05099 Tellurite resistance protein TerB H9J98_14560 PF00226 DnaJ domain H9J98_14565 PF03968 OstA-like protein H9J98_14565 PF04453 LPS transport system D H9J98_14570 PF09312 SurA N-terminal domain H9J98_14575 PF04166 Pyridoxal phosphate biosynthetic protein PdxA H9J98_14580 PF00398 Ribosomal RNA adenine dimethylase H9J98_14585 PF04379 ApaG domain H9J98_14590 PF00149 Calcineurin-like phosphoesterase H9J98_14595 PF00186 Dihydrofolate reductase H9J98_14600 PF12821 Threonine/Serine exporter, ThrE H9J98_14605 PF06738 Putative threonine/serine exporter H9J98_14610 PF01926 50S ribosome-binding GTPase H9J98_14610 PF01018 GTP1/OBG H9J98_14615 PF01016 Ribosomal L27 protein H9J98_14620 PF00829 Ribosomal prokaryotic L21 protein H9J98_14625 PF00348 Polyprenyl synthetase H9J98_14635 PF00056 lactate/malate dehydrogenase, NAD binding domain H9J98_14635 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain H9J98_14640 PF02863 Arginine repressor, C-terminal domain H9J98_14640 PF01316 Arginine repressor, DNA binding domain H9J98_14645 PF16868 NMT1-like family H9J98_14660 PF00005 ABC transporter H9J98_14665 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_14675 PF02441 Flavoprotein H9J98_14680 PF01225 Mur ligase family, catalytic domain H9J98_14680 PF02875 Mur ligase family, glutamate ligase domain H9J98_14680 PF08245 Mur ligase middle domain H9J98_14685 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain H9J98_14690 PF00719 Inorganic pyrophosphatase H9J98_14700 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like H9J98_14705 PF04357 TamB, inner membrane protein subunit of TAM complex H9J98_14710 PF01103 Surface antigen H9J98_14710 PF17243 POTRA domain TamA domain 1 H9J98_14715 PF01625 Peptide methionine sulfoxide reductase H9J98_14720 PF06526 Protein of unknown function (DUF1107) H9J98_14725 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) H9J98_14730 PF10795 Protein of unknown function (DUF2607) H9J98_14740 PF00005 ABC transporter H9J98_14765 PF03600 Citrate transporter H9J98_14765 PF02080 TrkA-C domain H9J98_14770 PF00009 Elongation factor Tu GTP binding domain H9J98_14775 PF01507 Phosphoadenosine phosphosulfate reductase family H9J98_14780 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases H9J98_14780 PF10414 Sirohaem synthase dimerisation region H9J98_14780 PF14824 Sirohaem biosynthesis protein central H9J98_14785 PF00149 Calcineurin-like phosphoesterase H9J98_14785 PF02872 5'-nucleotidase, C-terminal domain H9J98_14795 PF03880 DbpA RNA binding domain H9J98_14795 PF00270 DEAD/DEAH box helicase H9J98_14795 PF00271 Helicase conserved C-terminal domain H9J98_14800 PF13673 Acetyltransferase (GNAT) domain H9J98_14810 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase H9J98_14810 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase H9J98_14820 PF01196 Ribosomal protein L17 H9J98_14825 PF01000 RNA polymerase Rpb3/RpoA insert domain H9J98_14825 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain H9J98_14825 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain H9J98_14830 PF01479 S4 domain H9J98_14830 PF00163 Ribosomal protein S4/S9 N-terminal domain H9J98_14835 PF00411 Ribosomal protein S11 H9J98_14840 PF00416 Ribosomal protein S13/S18 H9J98_14845 PF00444 Ribosomal protein L36 H9J98_14850 PF00344 SecY translocase H9J98_14855 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A H9J98_14860 PF00327 Ribosomal protein L30p/L7e H9J98_14865 PF03719 Ribosomal protein S5, C-terminal domain H9J98_14865 PF00333 Ribosomal protein S5, N-terminal domain H9J98_14870 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast H9J98_14875 PF00347 Ribosomal protein L6 H9J98_14880 PF00410 Ribosomal protein S8 H9J98_14885 PF00253 Ribosomal protein S14p/S29e H9J98_14890 PF00673 ribosomal L5P family C-terminus H9J98_14890 PF00281 Ribosomal protein L5 H9J98_14895 PF00467 KOW motif H9J98_14895 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 H9J98_14900 PF00238 Ribosomal protein L14p/L23e H9J98_14905 PF00366 Ribosomal protein S17 H9J98_14910 PF00831 Ribosomal L29 protein H9J98_14915 PF00252 Ribosomal protein L16p/L10e H9J98_14920 PF00189 Ribosomal protein S3, C-terminal domain H9J98_14920 PF07650 KH domain H9J98_14925 PF00237 Ribosomal protein L22p/L17e H9J98_14930 PF00203 Ribosomal protein S19 H9J98_14935 PF00181 Ribosomal Proteins L2, RNA binding domain H9J98_14935 PF03947 Ribosomal Proteins L2, C-terminal domain H9J98_14940 PF00276 Ribosomal protein L23 H9J98_14945 PF00573 Ribosomal protein L4/L1 family H9J98_14950 PF00297 Ribosomal protein L3 H9J98_14955 PF00338 Ribosomal protein S10p/S20e H9J98_14960 PF01197 Ribosomal protein L31 H9J98_14965 PF18074 Primosomal protein N C-terminal domain H9J98_14965 PF17764 3′ DNA-binding domain (3′BD) H9J98_14965 PF00271 Helicase conserved C-terminal domain H9J98_14965 PF00270 DEAD/DEAH box helicase H9J98_14965 PF18319 PriA DNA helicase Cys-rich region (CRR) domain H9J98_14970 PF00356 Bacterial regulatory proteins, lacI family H9J98_14980 PF00227 Proteasome subunit H9J98_14985 PF00004 ATPase family associated with various cellular activities (AAA) H9J98_14985 PF07724 AAA domain (Cdc48 subfamily) H9J98_14990 PF01040 UbiA prenyltransferase family H9J98_14995 PF03737 Aldolase/RraA H9J98_15000 PF06005 Cell division protein ZapB H9J98_15005 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded H9J98_15010 PF00455 DeoR C terminal sensor domain H9J98_15010 PF08220 DeoR-like helix-turn-helix domain H9J98_15030 PF00121 Triosephosphate isomerase H9J98_15045 PF02796 Helix-turn-helix domain of resolvase H9J98_15045 PF00239 Resolvase, N terminal domain H9J98_15050 PF01389 OmpA-like transmembrane domain H9J98_15050 PF00691 OmpA family H9J98_15055 PF02368 Bacterial Ig-like domain (group 2) H9J98_15055 PF11999 Protein of unknown function (DUF3494) H9J98_15085 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain H9J98_15085 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain H9J98_15085 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain H9J98_15090 PF02719 Polysaccharide biosynthesis protein H9J98_15095 PF02397 Bacterial sugar transferase H9J98_15100 PF01370 NAD dependent epimerase/dehydratase family H9J98_15105 PF00534 Glycosyl transferases group 1 H9J98_15105 PF13439 Glycosyltransferase Family 4 H9J98_15110 PF00534 Glycosyl transferases group 1 H9J98_15110 PF13477 Glycosyl transferase 4-like H9J98_15115 PF00535 Glycosyl transferase family 2 H9J98_15125 PF00132 Bacterial transferase hexapeptide (six repeats) H9J98_15125 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal H9J98_15125 PF14602 Hexapeptide repeat of succinyl-transferase H9J98_15165 PF06082 Exopolysaccharide biosynthesis protein YbjH H9J98_15170 PF01370 NAD dependent epimerase/dehydratase family H9J98_15175 PF03279 Bacterial lipid A biosynthesis acyltransferase H9J98_15180 PF01075 Glycosyltransferase family 9 (heptosyltransferase) H9J98_15185 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) H9J98_15185 PF00534 Glycosyl transferases group 1 H9J98_15190 PF07922 Glycosyltransferase family 52 H9J98_15195 PF02348 Cytidylyltransferase H9J98_15200 PF00483 Nucleotidyl transferase H9J98_15210 PF08666 SAF domain H9J98_15210 PF03102 NeuB family H9J98_15215 PF02350 UDP-N-acetylglucosamine 2-epimerase H9J98_15220 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family H9J98_15225 PF02719 Polysaccharide biosynthesis protein H9J98_15235 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family H9J98_15240 PF13193 AMP-binding enzyme C-terminal domain H9J98_15240 PF00501 AMP-binding enzyme H9J98_15245 PF00106 short chain dehydrogenase H9J98_15265 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III H9J98_15265 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal H9J98_15275 PF00483 Nucleotidyl transferase H9J98_15280 PF16363 GDP-mannose 4,6 dehydratase H9J98_15290 PF01219 Prokaryotic diacylglycerol kinase H9J98_15295 PF01075 Glycosyltransferase family 9 (heptosyltransferase) H9J98_15300 PF00535 Glycosyl transferase family 2 H9J98_15305 PF00535 Glycosyl transferase family 2 H9J98_15310 PF01467 Cytidylyltransferase-like H9J98_15315 PF05686 Glycosyl transferase family 90 H9J98_15325 PF06827 Zinc finger found in FPG and IleRS H9J98_15325 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain H9J98_15325 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain H9J98_15335 PF00471 Ribosomal protein L33 H9J98_15340 PF00830 Ribosomal L28 family H9J98_15345 PF04002 RadC-like JAB domain H9J98_15350 PF00672 HAMP domain H9J98_15350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9J98_15350 PF17200 Single Cache domain 2 H9J98_15355 PF02441 Flavoprotein H9J98_15355 PF04127 DNA / pantothenate metabolism flavoprotein H9J98_15360 PF00440 Bacterial regulatory proteins, tetR family H9J98_15365 PF03279 Bacterial lipid A biosynthesis acyltransferase H9J98_15370 PF00156 Phosphoribosyl transferase domain H9J98_15375 PF03725 3' exoribonuclease family, domain 2 H9J98_15375 PF01138 3' exoribonuclease family, domain 1 H9J98_15380 PF03755 YicC-like family, N-terminal region H9J98_15380 PF08340 Domain of unknown function (DUF1732) H9J98_15390 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H9J98_15390 PF00005 ABC transporter H9J98_15395 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H9J98_15395 PF00005 ABC transporter H9J98_15400 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle H9J98_15405 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_15405 PF12911 N-terminal TM domain of oligopeptide transport permease C H9J98_15410 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_15415 PF07715 TonB-dependent Receptor Plug Domain H9J98_15415 PF00593 TonB dependent receptor H9J98_15430 PF01618 MotA/TolQ/ExbB proton channel family H9J98_15435 PF02472 Biopolymer transport protein ExbD/TolR H9J98_15450 PF00625 Guanylate kinase H9J98_15455 PF01192 RNA polymerase Rpb6 H9J98_15460 PF04607 Region found in RelA / SpoT proteins H9J98_15460 PF02824 TGS domain H9J98_15460 PF13291 ACT domain H9J98_15465 PF12105 SpoU, rRNA methylase, C-terminal H9J98_15465 PF00588 SpoU rRNA Methylase family H9J98_15470 PF00270 DEAD/DEAH box helicase H9J98_15470 PF00271 Helicase conserved C-terminal domain H9J98_15470 PF17191 RecG wedge domain H9J98_15475 PF00860 Permease family H9J98_15480 PF00672 HAMP domain H9J98_15480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_15480 PF00512 His Kinase A (phospho-acceptor) domain H9J98_15485 PF00486 Transcriptional regulatory protein, C terminal H9J98_15485 PF00072 Response regulator receiver domain H9J98_15495 PF01272 Transcription elongation factor, GreA/GreB, C-term H9J98_15495 PF03449 Transcription elongation factor, N-terminal H9J98_15505 PF17674 HHH domain H9J98_15505 PF00575 S1 RNA binding domain H9J98_15505 PF09371 Tex-like protein N-terminal domain H9J98_15505 PF16921 Tex protein YqgF-like domain H9J98_15515 PF00561 alpha/beta hydrolase fold H9J98_15520 PF00156 Phosphoribosyl transferase domain H9J98_15525 PF01106 NifU-like domain H9J98_15525 PF01521 Iron-sulphur cluster biosynthesis H9J98_15530 PF00293 NUDIX domain H9J98_15535 PF00459 Inositol monophosphatase family H9J98_15540 PF01203 Type II secretion system (T2SS), protein N H9J98_15545 PF04612 Type II secretion system (T2SS), protein M H9J98_15550 PF12693 GspL periplasmic domain H9J98_15550 PF05134 Type II secretion system (T2SS), protein L H9J98_15555 PF03934 Type II secretion system (T2SS), protein K H9J98_15560 PF07963 Prokaryotic N-terminal methylation motif H9J98_15560 PF11612 Type II secretion system (T2SS), protein J H9J98_15565 PF07963 Prokaryotic N-terminal methylation motif H9J98_15565 PF02501 Type II secretion system (T2SS), protein I H9J98_15570 PF12019 Type II transport protein GspH H9J98_15575 PF08334 Type II secretion system (T2SS), protein G H9J98_15575 PF07963 Prokaryotic N-terminal methylation motif H9J98_15580 PF00482 Type II secretion system (T2SS), protein F H9J98_15585 PF00437 Type II/IV secretion system protein H9J98_15590 PF00263 Bacterial type II and III secretion system protein H9J98_15590 PF03958 Bacterial type II/III secretion system short domain H9J98_15595 PF11356 Type II secretion system protein C H9J98_15600 PF01479 S4 domain H9J98_15605 PF01430 Hsp33 protein H9J98_15610 PF01293 Phosphoenolpyruvate carboxykinase H9J98_15620 PF09500 Putative thioesterase (yiiD_Cterm) H9J98_15620 PF00583 Acetyltransferase (GNAT) family H9J98_15625 PF02580 D-Tyr-tRNA(Tyr) deacylase H9J98_15630 PF03631 Virulence factor BrkB H9J98_15645 PF00679 Elongation factor G C-terminus H9J98_15645 PF03144 Elongation factor Tu domain 2 H9J98_15645 PF00009 Elongation factor Tu GTP binding domain H9J98_15650 PF03951 Glutamine synthetase, beta-Grasp domain H9J98_15650 PF00120 Glutamine synthetase, catalytic domain H9J98_15660 PF00989 PAS fold H9J98_15660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_15660 PF00512 His Kinase A (phospho-acceptor) domain H9J98_15665 PF02954 Bacterial regulatory protein, Fis family H9J98_15665 PF00072 Response regulator receiver domain H9J98_15665 PF00158 Sigma-54 interaction domain H9J98_15670 PF00990 Diguanylate cyclase, GGDEF domain H9J98_15670 PF03707 Bacterial signalling protein N terminal repeat H9J98_15670 PF00563 EAL domain H9J98_15675 PF00962 Adenosine/AMP deaminase H9J98_15680 PF04055 Radical SAM superfamily H9J98_15680 PF06969 HemN C-terminal domain H9J98_15685 PF10675 Protein of unknown function (DUF2489) H9J98_15690 PF04220 Der GTPase activator (YihI) H9J98_15700 PF00034 Cytochrome c H9J98_15705 PF01926 50S ribosome-binding GTPase H9J98_15710 PF01367 5'-3' exonuclease, C-terminal SAM fold H9J98_15710 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain H9J98_15710 PF00476 DNA polymerase family A H9J98_15710 PF01612 3'-5' exonuclease H9J98_15725 PF00490 Delta-aminolevulinic acid dehydratase H9J98_15730 PF01026 TatD related DNase H9J98_15735 PF00902 Sec-independent protein translocase protein (TatC) H9J98_15740 PF02416 mttA/Hcf106 family H9J98_15745 PF02416 mttA/Hcf106 family H9J98_15750 PF03109 ABC1 family H9J98_15755 PF02036 SCP-2 sterol transfer family H9J98_15760 PF01209 ubiE/COQ5 methyltransferase family H9J98_15765 PF02646 RmuC family H9J98_15775 PF00563 EAL domain H9J98_15775 PF00990 Diguanylate cyclase, GGDEF domain H9J98_15775 PF03707 Bacterial signalling protein N terminal repeat H9J98_15780 PF01594 AI-2E family transporter H9J98_15830 PF04972 BON domain H9J98_15840 PF00158 Sigma-54 interaction domain H9J98_15840 PF02954 Bacterial regulatory protein, Fis family H9J98_15840 PF01590 GAF domain H9J98_15850 PF10625 Universal stress protein B (UspB) H9J98_15855 PF00210 Ferritin-like domain H9J98_15860 PF00582 Universal stress protein family H9J98_15865 PF00892 EamA-like transporter family H9J98_15875 PF04445 Putative SAM-dependent methyltransferase H9J98_15880 PF00563 EAL domain H9J98_15880 PF00990 Diguanylate cyclase, GGDEF domain H9J98_15880 PF08448 PAS fold H9J98_15885 PF01037 Lrp/AsnC ligand binding domain H9J98_15890 PF01432 Peptidase family M3 H9J98_15895 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ H9J98_15900 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain H9J98_15900 PF07992 Pyridine nucleotide-disulphide oxidoreductase H9J98_15905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_15905 PF03466 LysR substrate binding domain H9J98_15910 PF01048 Phosphorylase superfamily H9J98_15915 PF01081 KDPG and KHG aldolase H9J98_15920 PF02447 GntP family permease H9J98_15925 PF01202 Shikimate kinase H9J98_15930 PF00920 Dehydratase family H9J98_15935 PF00893 Small Multidrug Resistance protein H9J98_15940 PF00893 Small Multidrug Resistance protein H9J98_15945 PF03466 LysR substrate binding domain H9J98_15945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_15950 PF00356 Bacterial regulatory proteins, lacI family H9J98_15950 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family H9J98_15955 PF00069 Protein kinase domain H9J98_15985 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_15985 PF12911 N-terminal TM domain of oligopeptide transport permease C H9J98_15990 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_15995 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle H9J98_16000 PF00005 ABC transporter H9J98_16000 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H9J98_16005 PF13419 Haloacid dehalogenase-like hydrolase H9J98_16035 PF13442 Cytochrome C oxidase, cbb3-type, subunit III H9J98_16040 PF00580 UvrD/REP helicase N-terminal domain H9J98_16040 PF13361 UvrD-like helicase C-terminal domain H9J98_16045 PF16295 Tetracyclin repressor-like, C-terminal domain H9J98_16045 PF00440 Bacterial regulatory proteins, tetR family H9J98_16050 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H9J98_16055 PF00873 AcrB/AcrD/AcrF family H9J98_16060 PF04380 Membrane fusogenic activity H9J98_16065 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain H9J98_16065 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain H9J98_16070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_16070 PF03466 LysR substrate binding domain H9J98_16105 PF00132 Bacterial transferase hexapeptide (six repeats) H9J98_16110 PF07369 Protein of unknown function (DUF1488) H9J98_16115 PF18317 Shikimate 5'-dehydrogenase C-terminal domain H9J98_16115 PF08501 Shikimate dehydrogenase substrate binding domain H9J98_16115 PF01488 Shikimate / quinate 5-dehydrogenase H9J98_16120 PF01218 Coproporphyrinogen III oxidase H9J98_16125 PF01300 Telomere recombination H9J98_16130 PF00731 AIR carboxylase H9J98_16135 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain H9J98_16135 PF02222 ATP-grasp domain H9J98_16140 PF01396 Topoisomerase DNA binding C4 zinc finger H9J98_16145 PF04361 Protein of unknown function (DUF494) H9J98_16150 PF02481 DNA recombination-mediator protein A H9J98_16150 PF17782 DprA winged helix domain H9J98_16160 PF01327 Polypeptide deformylase H9J98_16165 PF02911 Formyl transferase, C-terminal domain H9J98_16165 PF00551 Formyl transferase H9J98_16170 PF01189 16S rRNA methyltransferase RsmB/F H9J98_16170 PF01029 NusB family H9J98_16175 PF02254 TrkA-N domain H9J98_16175 PF02080 TrkA-C domain H9J98_16180 PF02386 Cation transport protein H9J98_16190 PF03006 Haemolysin-III related H9J98_16195 PF07070 SpoOM protein H9J98_16200 PF06288 Protein of unknown function (DUF1040) H9J98_16205 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase H9J98_16205 PF13746 4Fe-4S dicluster domain H9J98_16205 PF12801 4Fe-4S binding domain H9J98_16210 PF01636 Phosphotransferase enzyme family H9J98_16215 PF01323 DSBA-like thioredoxin domain H9J98_16220 PF01553 Acyltransferase H9J98_16230 PF01078 Magnesium chelatase, subunit ChlI H9J98_16230 PF13335 Magnesium chelatase, subunit ChlI C-terminal H9J98_16235 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain H9J98_16235 PF00205 Thiamine pyrophosphate enzyme, central domain H9J98_16235 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain H9J98_16245 PF01063 Amino-transferase class IV H9J98_16250 PF00920 Dehydratase family H9J98_16255 PF00291 Pyridoxal-phosphate dependent enzyme H9J98_16255 PF00585 C-terminal regulatory domain of Threonine dehydratase H9J98_16260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_16260 PF03466 LysR substrate binding domain H9J98_16265 PF07690 Major Facilitator Superfamily H9J98_16270 PF00497 Bacterial extracellular solute-binding proteins, family 3 H9J98_16275 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_16280 PF12804 MobA-like NTP transferase domain H9J98_16280 PF00132 Bacterial transferase hexapeptide (six repeats) H9J98_16285 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain H9J98_16285 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain H9J98_16290 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain H9J98_16290 PF02874 ATP synthase alpha/beta family, beta-barrel domain H9J98_16295 PF00231 ATP synthase H9J98_16300 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain H9J98_16300 PF00306 ATP synthase alpha/beta chain, C terminal domain H9J98_16300 PF02874 ATP synthase alpha/beta family, beta-barrel domain H9J98_16305 PF00213 ATP synthase delta (OSCP) subunit H9J98_16310 PF00430 ATP synthase B/B' CF(0) H9J98_16315 PF00137 ATP synthase subunit C H9J98_16320 PF00119 ATP synthase A chain H9J98_16325 PF03899 ATP synthase I chain H9J98_16330 PF17762 HTH domain found in ParB protein H9J98_16330 PF02195 ParB-like nuclease domain H9J98_16335 PF13614 AAA domain H9J98_16340 PF02527 rRNA small subunit methyltransferase G H9J98_16345 PF01134 Glucose inhibited division protein A H9J98_16345 PF13932 GidA associated domain H9J98_16350 PF00258 Flavodoxin H9J98_16355 PF10396 GTP-binding protein TrmE N-terminus H9J98_16355 PF12631 MnmE helical domain H9J98_16355 PF01926 50S ribosome-binding GTPase H9J98_16360 PF14849 YidC periplasmic domain H9J98_16360 PF02096 60Kd inner membrane protein H9J98_16365 PF01809 Putative membrane protein insertion efficiency factor H9J98_16370 PF00825 Ribonuclease P H9J98_16375 PF00468 Ribosomal protein L34 H9J98_16380 PF00005 ABC transporter H9J98_16385 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_16390 PF00497 Bacterial extracellular solute-binding proteins, family 3 H9J98_16475 PF02566 OsmC-like protein H9J98_16480 PF01625 Peptide methionine sulfoxide reductase H9J98_16480 PF01641 SelR domain H9J98_16495 PF04244 Deoxyribodipyrimidine photo-lyase-related protein H9J98_16500 PF03441 FAD binding domain of DNA photolyase H9J98_16500 PF00875 DNA photolyase H9J98_16505 PF00990 Diguanylate cyclase, GGDEF domain H9J98_16520 PF00672 HAMP domain H9J98_16520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9J98_16520 PF12729 Four helix bundle sensory module for signal transduction H9J98_16525 PF05230 MASE2 domain H9J98_16525 PF00990 Diguanylate cyclase, GGDEF domain H9J98_16530 PF13532 2OG-Fe(II) oxygenase superfamily H9J98_16540 PF01773 Na+ dependent nucleoside transporter N-terminus H9J98_16540 PF07670 Nucleoside recognition H9J98_16540 PF07662 Na+ dependent nucleoside transporter C-terminus H9J98_16555 PF01212 Beta-eliminating lyase H9J98_16565 PF01266 FAD dependent oxidoreductase H9J98_16580 PF05525 Branched-chain amino acid transport protein H9J98_16585 PF00990 Diguanylate cyclase, GGDEF domain H9J98_16585 PF08448 PAS fold H9J98_16590 PF02954 Bacterial regulatory protein, Fis family H9J98_16590 PF00158 Sigma-54 interaction domain H9J98_16590 PF00072 Response regulator receiver domain H9J98_16595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_16595 PF00512 His Kinase A (phospho-acceptor) domain H9J98_16605 PF00232 Glycosyl hydrolase family 1 H9J98_16630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_16630 PF03466 LysR substrate binding domain H9J98_16635 PF18030 RimK PreATP-grasp domain H9J98_16635 PF08443 RimK-like ATP-grasp domain H9J98_16640 PF18030 RimK PreATP-grasp domain H9J98_16640 PF08443 RimK-like ATP-grasp domain H9J98_16645 PF00753 Metallo-beta-lactamase superfamily H9J98_16650 PF17810 Arginine decarboxylase helical bundle domain H9J98_16650 PF17944 Arginine decarboxylase C-terminal helical extension H9J98_16650 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain H9J98_16655 PF00491 Arginase family H9J98_16660 PF07690 Major Facilitator Superfamily H9J98_16665 PF00326 Prolyl oligopeptidase family H9J98_16665 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain H9J98_16680 PF00950 ABC 3 transport family H9J98_16685 PF00005 ABC transporter H9J98_16690 PF01297 Zinc-uptake complex component A periplasmic H9J98_16730 PF02472 Biopolymer transport protein ExbD/TolR H9J98_16735 PF01618 MotA/TolQ/ExbB proton channel family H9J98_16740 PF01618 MotA/TolQ/ExbB proton channel family H9J98_16750 PF00593 TonB dependent receptor H9J98_16750 PF07715 TonB-dependent Receptor Plug Domain H9J98_16755 PF16750 Sensor domain of 2-component histidine kinase H9J98_16755 PF00512 His Kinase A (phospho-acceptor) domain H9J98_16755 PF00672 HAMP domain H9J98_16755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_16760 PF00072 Response regulator receiver domain H9J98_16760 PF00486 Transcriptional regulatory protein, C terminal H9J98_16765 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain H9J98_16765 PF00056 lactate/malate dehydrogenase, NAD binding domain H9J98_16770 PF03009 Glycerophosphoryl diester phosphodiesterase family H9J98_16780 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain H9J98_16780 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain H9J98_16785 PF10928 Protein of unknown function (DUF2810) H9J98_16835 PF04013 Putative SAM-dependent RNA methyltransferase H9J98_16840 PF01523 Putative modulator of DNA gyrase H9J98_16845 PF01523 Putative modulator of DNA gyrase H9J98_16850 PF08543 Phosphomethylpyrimidine kinase H9J98_16855 PF00005 ABC transporter H9J98_16860 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_16865 PF09084 NMT1/THI5 like H9J98_16870 PF03070 TENA/THI-4/PQQC family H9J98_16875 PF02110 Hydroxyethylthiazole kinase family H9J98_16880 PF02581 Thiamine monophosphate synthase H9J98_16890 PF00384 Molybdopterin oxidoreductase H9J98_16890 PF18364 Molybdopterin oxidoreductase N-terminal domain H9J98_16890 PF01568 Molydopterin dinucleotide binding domain H9J98_16895 PF03264 NapC/NirT cytochrome c family, N-terminal region H9J98_16920 PF00583 Acetyltransferase (GNAT) family H9J98_16940 PF00392 Bacterial regulatory proteins, gntR family H9J98_16940 PF00155 Aminotransferase class I and II H9J98_16945 PF02595 Glycerate kinase family H9J98_16950 PF02447 GntP family permease H9J98_16955 PF05651 Putative sugar diacid recognition H9J98_16955 PF17853 GGDEF-like domain H9J98_16955 PF13556 PucR C-terminal helix-turn-helix domain H9J98_16990 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H9J98_16995 PF01661 Macro domain H9J98_17000 PF01204 Trehalase H9J98_17010 PF12706 Beta-lactamase superfamily domain H9J98_17020 PF07690 Major Facilitator Superfamily H9J98_17025 PF13533 Biotin-lipoyl like H9J98_17030 PF03922 OmpW family H9J98_17035 PF13599 Pentapeptide repeats (9 copies) H9J98_17050 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading H9J98_17050 PF18416 N-acetylglucosamine binding protein domain 2 H9J98_17055 PF01037 Lrp/AsnC ligand binding domain H9J98_17060 PF01810 LysE type translocator H9J98_17065 PF00326 Prolyl oligopeptidase family H9J98_17070 PF08021 Siderophore-interacting FAD-binding domain H9J98_17070 PF04954 Siderophore-interacting protein H9J98_17075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_17075 PF03466 LysR substrate binding domain H9J98_17080 PF00797 N-acetyltransferase H9J98_17085 PF08240 Alcohol dehydrogenase GroES-like domain H9J98_17085 PF00107 Zinc-binding dehydrogenase H9J98_17090 PF00756 Putative esterase H9J98_17100 PF17152 Periplasmic sensor domain H9J98_17100 PF00990 Diguanylate cyclase, GGDEF domain H9J98_17115 PF03466 LysR substrate binding domain H9J98_17115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_17130 PF00849 RNA pseudouridylate synthase H9J98_17135 PF01554 MatE H9J98_17140 PF00563 EAL domain H9J98_17140 PF00990 Diguanylate cyclase, GGDEF domain H9J98_17150 PF06865 Pyrimidine/purine nucleoside phosphorylase H9J98_17160 PF08329 Chitinase A, N-terminal domain H9J98_17160 PF00704 Glycosyl hydrolases family 18 H9J98_17180 PF03600 Citrate transporter H9J98_17190 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 H9J98_17200 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain H9J98_17200 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain H9J98_17205 PF06029 AlkA N-terminal domain H9J98_17205 PF00730 HhH-GPD superfamily base excision DNA repair protein H9J98_17215 PF07681 DoxX H9J98_17220 PF02678 Pirin H9J98_17220 PF17954 Quercetinase C-terminal cupin domain H9J98_17225 PF03466 LysR substrate binding domain H9J98_17225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_17240 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase H9J98_17250 PF03616 Sodium/glutamate symporter H9J98_17255 PF00155 Aminotransferase class I and II H9J98_17255 PF00392 Bacterial regulatory proteins, gntR family H9J98_17260 PF00005 ABC transporter H9J98_17270 PF03616 Sodium/glutamate symporter H9J98_17275 PF00132 Bacterial transferase hexapeptide (six repeats) H9J98_17290 PF17200 Single Cache domain 2 H9J98_17290 PF00672 HAMP domain H9J98_17290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9J98_17295 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD H9J98_17305 PF04397 LytTr DNA-binding domain H9J98_17305 PF00072 Response regulator receiver domain H9J98_17310 PF07694 5TMR of 5TMR-LYT H9J98_17310 PF13492 GAF domain H9J98_17310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_17310 PF06580 Histidine kinase H9J98_17330 PF00005 ABC transporter H9J98_17340 PF01098 Cell cycle protein H9J98_17345 PF01709 Transcriptional regulator H9J98_17355 PF01627 Hpt domain H9J98_17355 PF00072 Response regulator receiver domain H9J98_17355 PF00672 HAMP domain H9J98_17355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_17355 PF17149 Periplasmic sensor domain found in signal transduction proteins H9J98_17355 PF00512 His Kinase A (phospho-acceptor) domain H9J98_17365 PF08719 Domain of unknown function (DUF1768) H9J98_17365 PF00925 GTP cyclohydrolase II H9J98_17375 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H9J98_17375 PF00005 ABC transporter H9J98_17380 PF00005 ABC transporter H9J98_17380 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H9J98_17395 PF13614 AAA domain H9J98_17395 PF18607 ParA helix turn helix domain H9J98_17400 PF08775 ParB family H9J98_17400 PF02195 ParB-like nuclease domain H9J98_17405 PF13718 GNAT acetyltransferase 2 H9J98_17405 PF05127 Helicase H9J98_17415 PF00132 Bacterial transferase hexapeptide (six repeats) H9J98_17425 PF03575 Peptidase family S51 H9J98_17430 PF00267 Gram-negative porin H9J98_17435 PF00367 phosphotransferase system, EIIB H9J98_17435 PF02378 Phosphotransferase system, EIIC H9J98_17440 PF01380 SIS domain H9J98_17445 PF01418 Helix-turn-helix domain, rpiR family H9J98_17445 PF01380 SIS domain H9J98_17450 PF00246 Zinc carboxypeptidase H9J98_17455 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle H9J98_17460 PF03358 NADPH-dependent FMN reductase H9J98_17470 PF00664 ABC transporter transmembrane region H9J98_17470 PF00005 ABC transporter H9J98_17470 PF03412 Peptidase C39 family H9J98_17485 PF00529 HlyD membrane-fusion protein of T1SS H9J98_17490 PF00158 Sigma-54 interaction domain H9J98_17490 PF00072 Response regulator receiver domain H9J98_17490 PF02954 Bacterial regulatory protein, Fis family H9J98_17495 PF02743 Cache domain H9J98_17495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_17495 PF00512 His Kinase A (phospho-acceptor) domain H9J98_17505 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region H9J98_17505 PF01243 Pyridoxamine 5'-phosphate oxidase H9J98_17515 PF12833 Helix-turn-helix domain H9J98_17520 PF00171 Aldehyde dehydrogenase family H9J98_17520 PF01619 Proline dehydrogenase H9J98_17520 PF14850 DNA-binding domain of Proline dehydrogenase H9J98_17520 PF18327 Proline utilization A proline dehydrogenase N-terminal domain H9J98_17530 PF00474 Sodium:solute symporter family H9J98_17565 PF01037 Lrp/AsnC ligand binding domain H9J98_17575 PF00005 ABC transporter H9J98_17575 PF00664 ABC transporter transmembrane region H9J98_17600 PF10688 Bacterial inner membrane protein H9J98_17605 PF01081 KDPG and KHG aldolase H9J98_17610 PF00294 pfkB family carbohydrate kinase H9J98_17615 PF02614 Glucuronate isomerase H9J98_17620 PF01232 Mannitol dehydrogenase Rossmann domain H9J98_17620 PF08125 Mannitol dehydrogenase C-terminal domain H9J98_17625 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component H9J98_17630 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component H9J98_17635 PF03480 Bacterial extracellular solute-binding protein, family 7 H9J98_17640 PF00392 Bacterial regulatory proteins, gntR family H9J98_17640 PF07729 FCD domain H9J98_17645 PF03786 D-mannonate dehydratase (UxuA) H9J98_17650 PF00270 DEAD/DEAH box helicase H9J98_17650 PF00271 Helicase conserved C-terminal domain H9J98_17655 PF03473 MOSC domain H9J98_17655 PF03475 3-alpha domain H9J98_17670 PF02056 Family 4 glycosyl hydrolase H9J98_17670 PF11975 Family 4 glycosyl hydrolase C-terminal domain H9J98_17675 PF03466 LysR substrate binding domain H9J98_17675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_17680 PF02743 Cache domain H9J98_17680 PF00672 HAMP domain H9J98_17680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9J98_17690 PF04542 Sigma-70 region 2 H9J98_17690 PF08281 Sigma-70, region 4 H9J98_17695 PF12833 Helix-turn-helix domain H9J98_17695 PF01965 DJ-1/PfpI family H9J98_17700 PF03466 LysR substrate binding domain H9J98_17700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_17715 PF07992 Pyridine nucleotide-disulphide oxidoreductase H9J98_17715 PF13192 Thioredoxin domain H9J98_17720 PF00578 AhpC/TSA family H9J98_17720 PF10417 C-terminal domain of 1-Cys peroxiredoxin H9J98_17725 PF01047 MarR family H9J98_17730 PF02566 OsmC-like protein H9J98_17745 PF12833 Helix-turn-helix domain H9J98_17745 PF02311 AraC-like ligand binding domain H9J98_17755 PF11762 L-arabinose isomerase C-terminal domain H9J98_17755 PF02610 L-arabinose isomerase H9J98_17760 PF00596 Class II Aldolase and Adducin N-terminal domain H9J98_17765 PF02782 FGGY family of carbohydrate kinases, C-terminal domain H9J98_17765 PF00370 FGGY family of carbohydrate kinases, N-terminal domain H9J98_17770 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family H9J98_17775 PF00005 ABC transporter H9J98_17780 PF02653 Branched-chain amino acid transport system / permease component H9J98_17785 PF01136 Peptidase family U32 H9J98_17795 PF00367 phosphotransferase system, EIIB H9J98_17795 PF02378 Phosphotransferase system, EIIC H9J98_17800 PF00486 Transcriptional regulatory protein, C terminal H9J98_17800 PF00072 Response regulator receiver domain H9J98_17805 PF08521 Two-component sensor kinase N-terminal H9J98_17805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_17805 PF00512 His Kinase A (phospho-acceptor) domain H9J98_17810 PF01547 Bacterial extracellular solute-binding protein H9J98_17815 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain H9J98_17815 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain H9J98_17820 PF06276 Ferric iron reductase FhuF-like transporter H9J98_17820 PF04183 IucA / IucC family H9J98_17830 PF04183 IucA / IucC family H9J98_17830 PF06276 Ferric iron reductase FhuF-like transporter H9J98_17835 PF00206 Lyase H9J98_17835 PF02655 ATP-grasp domain H9J98_17840 PF07715 TonB-dependent Receptor Plug Domain H9J98_17840 PF00593 TonB dependent receptor H9J98_17845 PF07715 TonB-dependent Receptor Plug Domain H9J98_17845 PF07660 Secretin and TonB N terminus short domain H9J98_17845 PF00593 TonB dependent receptor H9J98_17850 PF01497 Periplasmic binding protein H9J98_17855 PF01032 FecCD transport family H9J98_17860 PF01032 FecCD transport family H9J98_17865 PF00005 ABC transporter H9J98_17870 PF00672 HAMP domain H9J98_17870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9J98_17870 PF17200 Single Cache domain 2 H9J98_17875 PF00675 Insulinase (Peptidase family M16) H9J98_17875 PF05193 Peptidase M16 inactive domain H9J98_17885 PF04225 Opacity-associated protein A LysM-like domain H9J98_17885 PF01551 Peptidase family M23 H9J98_17895 PF07690 Major Facilitator Superfamily H9J98_17905 PF00128 Alpha amylase, catalytic domain H9J98_17905 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) H9J98_17910 PF02264 LamB porin H9J98_17925 PF00128 Alpha amylase, catalytic domain H9J98_17925 PF02903 Alpha amylase, N-terminal ig-like domain H9J98_17925 PF16657 Maltogenic Amylase, C-terminal domain H9J98_17930 PF04231 Endonuclease I H9J98_17935 PF17967 Pullulanase N2 domain H9J98_17935 PF18494 Pullulanase Ins domain H9J98_17935 PF03714 Bacterial pullanase-associated domain H9J98_17935 PF11852 Domain of unknown function (DUF3372) H9J98_17935 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) H9J98_17960 PF13693 Winged helix-turn-helix DNA-binding H9J98_18065 PF08765 Mor transcription activator family H9J98_18095 PF08461 Ribonuclease R winged-helix domain H9J98_18100 PF11985 Protein of unknown function (DUF3486) H9J98_18105 PF03237 Terminase-like family H9J98_18110 PF06074 Protein of unknown function (DUF935) H9J98_18130 PF10123 Mu-like prophage I protein H9J98_18140 PF10124 Mu-like prophage major head subunit gpT H9J98_18145 PF12949 HeH/LEM domain H9J98_18145 PF17891 Mu-like prophage FluMu N-terminal domain H9J98_18150 PF07030 Protein of unknown function (DUF1320) H9J98_18220 PF13520 Amino acid permease H9J98_18230 PF08543 Phosphomethylpyrimidine kinase H9J98_18240 PF00375 Sodium:dicarboxylate symporter family H9J98_18245 PF03193 RsgA GTPase H9J98_18250 PF00367 phosphotransferase system, EIIB H9J98_18250 PF02378 Phosphotransferase system, EIIC H9J98_18260 PF02630 SCO1/SenC H9J98_18275 PF00196 Bacterial regulatory proteins, luxR family H9J98_18275 PF17874 MalT-like TPR region H9J98_18280 PF00343 Carbohydrate phosphorylase H9J98_18285 PF02446 4-alpha-glucanotransferase H9J98_18290 PF02806 Alpha amylase, C-terminal all-beta domain H9J98_18290 PF00128 Alpha amylase, catalytic domain H9J98_18290 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) H9J98_18295 PF00912 Transglycosylase H9J98_18300 PF00128 Alpha amylase, catalytic domain H9J98_18315 PF07670 Nucleoside recognition H9J98_18320 PF07670 Nucleoside recognition H9J98_18325 PF07687 Peptidase dimerisation domain H9J98_18325 PF01546 Peptidase family M20/M25/M40 H9J98_18330 PF06803 Protein of unknown function (DUF1232) H9J98_18335 PF00375 Sodium:dicarboxylate symporter family H9J98_18365 PF03466 LysR substrate binding domain H9J98_18365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_18370 PF08803 Putative mono-oxygenase ydhR H9J98_18385 PF00881 Nitroreductase family H9J98_18390 PF01914 MarC family integral membrane protein H9J98_18395 PF01734 Patatin-like phospholipase H9J98_18400 PF18416 N-acetylglucosamine binding protein domain 2 H9J98_18400 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading H9J98_18405 PF13542 Helix-turn-helix domain of transposase family ISL3 H9J98_18405 PF01610 Transposase H9J98_18405 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 H9J98_18410 PF00581 Rhodanese-like domain H9J98_18410 PF17773 UPF0176 acylphosphatase like domain H9J98_18420 PF00561 alpha/beta hydrolase fold H9J98_18425 PF00768 D-alanyl-D-alanine carboxypeptidase H9J98_18425 PF07943 Penicillin-binding protein 5, C-terminal domain H9J98_18430 PF00686 Starch binding domain H9J98_18430 PF00128 Alpha amylase, catalytic domain H9J98_18435 PF12833 Helix-turn-helix domain H9J98_18435 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term H9J98_18440 PF00881 Nitroreductase family H9J98_18450 PF03466 LysR substrate binding domain H9J98_18450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_18455 PF09905 DNA-binding protein VF530 H9J98_18465 PF00970 Oxidoreductase FAD-binding domain H9J98_18465 PF00175 Oxidoreductase NAD-binding domain H9J98_18475 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) H9J98_18480 PF01594 AI-2E family transporter H9J98_18490 PF13533 Biotin-lipoyl like H9J98_18510 PF00892 EamA-like transporter family H9J98_18515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_18515 PF03466 LysR substrate binding domain H9J98_18520 PF07690 Major Facilitator Superfamily H9J98_18530 PF00583 Acetyltransferase (GNAT) family H9J98_18540 PF00923 Transaldolase/Fructose-6-phosphate aldolase H9J98_18545 PF04055 Radical SAM superfamily H9J98_18550 PF02901 Pyruvate formate lyase-like H9J98_18550 PF01228 Glycine radical H9J98_18570 PF08000 Bacterial PH domain H9J98_18580 PF13677 Membrane MotB of proton-channel complex MotA/MotB H9J98_18580 PF00691 OmpA family H9J98_18585 PF01618 MotA/TolQ/ExbB proton channel family H9J98_18590 PF04545 Sigma-70, region 4 H9J98_18590 PF04542 Sigma-70 region 2 H9J98_18595 PF03748 Flagellar basal body-associated protein FliL H9J98_18610 PF02561 Flagellar protein FliS H9J98_18615 PF02465 Flagellar hook-associated protein 2 N-terminus H9J98_18615 PF07195 Flagellar hook-associated protein 2 C-terminus H9J98_18615 PF07196 Flagellin hook IN motif H9J98_18635 PF00700 Bacterial flagellin C-terminal helical region H9J98_18635 PF00669 Bacterial flagellin N-terminal helical region H9J98_18645 PF00771 FHIPEP family H9J98_18650 PF01312 FlhB HrpN YscU SpaS Family H9J98_18655 PF01311 Bacterial export proteins, family 1 H9J98_18660 PF01313 Bacterial export proteins, family 3 H9J98_18665 PF00813 FliP family H9J98_18670 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term H9J98_18695 PF00072 Response regulator receiver domain H9J98_18695 PF02954 Bacterial regulatory protein, Fis family H9J98_18695 PF00158 Sigma-54 interaction domain H9J98_18700 PF02049 Flagellar hook-basal body complex protein FliE H9J98_18705 PF08345 Flagellar M-ring protein C-terminal H9J98_18705 PF01514 Secretory protein of YscJ/FliF family H9J98_18710 PF01706 FliG C-terminal domain H9J98_18710 PF14841 FliG middle domain H9J98_18710 PF14842 FliG N-terminal domain H9J98_18720 PF18269 T3SS EscN ATPase C-terminal domain H9J98_18720 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain H9J98_18735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_18735 PF03466 LysR substrate binding domain H9J98_18770 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H9J98_18775 PF03466 LysR substrate binding domain H9J98_18775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_18795 PF00486 Transcriptional regulatory protein, C terminal H9J98_18795 PF00072 Response regulator receiver domain H9J98_18800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_18800 PF00512 His Kinase A (phospho-acceptor) domain H9J98_18800 PF08448 PAS fold H9J98_18800 PF13426 PAS domain H9J98_18800 PF00072 Response regulator receiver domain H9J98_18805 PF00080 Copper/zinc superoxide dismutase (SODC) H9J98_18810 PF00266 Aminotransferase class-V H9J98_18815 PF00497 Bacterial extracellular solute-binding proteins, family 3 H9J98_18820 PF00990 Diguanylate cyclase, GGDEF domain H9J98_18820 PF03707 Bacterial signalling protein N terminal repeat H9J98_18820 PF00563 EAL domain H9J98_18825 PF00155 Aminotransferase class I and II H9J98_18830 PF08240 Alcohol dehydrogenase GroES-like domain H9J98_18830 PF00107 Zinc-binding dehydrogenase H9J98_18860 PF00194 Eukaryotic-type carbonic anhydrase H9J98_18865 PF00924 Mechanosensitive ion channel H9J98_18875 PF01070 FMN-dependent dehydrogenase H9J98_18880 PF02652 L-lactate permease H9J98_18885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_18885 PF03466 LysR substrate binding domain H9J98_18890 PF00326 Prolyl oligopeptidase family H9J98_18890 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain H9J98_18895 PF00005 ABC transporter H9J98_18895 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H9J98_18905 PF13654 AAA domain H9J98_18905 PF05362 Lon protease (S16) C-terminal proteolytic domain H9J98_18910 PF00672 HAMP domain H9J98_18910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9J98_18915 PF12945 Flagellar protein YcgR H9J98_18915 PF07238 PilZ domain H9J98_18930 PF00583 Acetyltransferase (GNAT) family H9J98_18935 PF12800 4Fe-4S binding domain H9J98_18935 PF12838 4Fe-4S dicluster domain H9J98_18940 PF13237 4Fe-4S dicluster domain H9J98_18940 PF12801 4Fe-4S binding domain H9J98_18955 PF12558 ATP-binding cassette cobalt transporter H9J98_18955 PF00005 ABC transporter H9J98_18960 PF07155 ECF-type riboflavin transporter, S component H9J98_18965 PF00529 HlyD membrane-fusion protein of T1SS H9J98_18965 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H9J98_18970 PF11742 Protein of unknown function (DUF3302) H9J98_18975 PF00990 Diguanylate cyclase, GGDEF domain H9J98_18990 PF01048 Phosphorylase superfamily H9J98_18995 PF08349 Protein of unknown function (DUF1722) H9J98_19000 PF13411 MerR HTH family regulatory protein H9J98_19005 PF03441 FAD binding domain of DNA photolyase H9J98_19005 PF00875 DNA photolyase H9J98_19010 PF01476 LysM domain H9J98_19010 PF03734 L,D-transpeptidase catalytic domain H9J98_19010 PF17969 L,D-transpeptidase C-terminal domain H9J98_19020 PF00270 DEAD/DEAH box helicase H9J98_19020 PF00271 Helicase conserved C-terminal domain H9J98_19025 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain H9J98_19025 PF00326 Prolyl oligopeptidase family H9J98_19030 PF00593 TonB dependent receptor H9J98_19030 PF07715 TonB-dependent Receptor Plug Domain H9J98_19050 PF00672 HAMP domain H9J98_19050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9J98_19055 PF12849 PBP superfamily domain H9J98_19060 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_19065 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_19070 PF00005 ABC transporter H9J98_19085 PF07584 Aerotolerance regulator N-terminal H9J98_19085 PF13519 von Willebrand factor type A domain H9J98_19090 PF13519 von Willebrand factor type A domain H9J98_19100 PF01882 Protein of unknown function DUF58 H9J98_19105 PF17863 AAA lid domain H9J98_19105 PF07726 ATPase family associated with various cellular activities (AAA) H9J98_19110 PF00672 HAMP domain H9J98_19110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9J98_19110 PF02743 Cache domain H9J98_19120 PF00196 Bacterial regulatory proteins, luxR family H9J98_19125 PF00196 Bacterial regulatory proteins, luxR family H9J98_19135 PF00664 ABC transporter transmembrane region H9J98_19135 PF00005 ABC transporter H9J98_19140 PF00529 HlyD membrane-fusion protein of T1SS H9J98_19155 PF01389 OmpA-like transmembrane domain H9J98_19155 PF00691 OmpA family H9J98_19165 PF01032 FecCD transport family H9J98_19170 PF01497 Periplasmic binding protein H9J98_19175 PF00005 ABC transporter H9J98_19180 PF07715 TonB-dependent Receptor Plug Domain H9J98_19180 PF00593 TonB dependent receptor H9J98_19185 PF00664 ABC transporter transmembrane region H9J98_19185 PF00005 ABC transporter H9J98_19190 PF13493 Domain of unknown function (DUF4118) H9J98_19190 PF13493 Domain of unknown function (DUF4118) H9J98_19190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_19190 PF02702 Osmosensitive K+ channel His kinase sensor domain H9J98_19190 PF00512 His Kinase A (phospho-acceptor) domain H9J98_19190 PF02702 Osmosensitive K+ channel His kinase sensor domain H9J98_19190 PF00512 His Kinase A (phospho-acceptor) domain H9J98_19190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_19195 PF00072 Response regulator receiver domain H9J98_19195 PF00486 Transcriptional regulatory protein, C terminal H9J98_19200 PF02080 TrkA-C domain H9J98_19200 PF02254 TrkA-N domain H9J98_19205 PF02386 Cation transport protein H9J98_19215 PF00127 Copper binding proteins, plastocyanin/azurin family H9J98_19220 PF13419 Haloacid dehalogenase-like hydrolase H9J98_19230 PF01238 Phosphomannose isomerase type I H9J98_19235 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 H9J98_19235 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit H9J98_19240 PF12833 Helix-turn-helix domain H9J98_19250 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit H9J98_19260 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase H9J98_19260 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase H9J98_19265 PF06628 Catalase-related immune-responsive H9J98_19265 PF00199 Catalase H9J98_19270 PF13417 Glutathione S-transferase, N-terminal domain H9J98_19275 PF16884 N-terminal domain of oxidoreductase H9J98_19275 PF00107 Zinc-binding dehydrogenase H9J98_19280 PF16925 Tetracyclin repressor-like, C-terminal domain H9J98_19280 PF00440 Bacterial regulatory proteins, tetR family H9J98_19285 PF04266 ASCH domain H9J98_19315 PF13439 Glycosyltransferase Family 4 H9J98_19315 PF00534 Glycosyl transferases group 1 H9J98_19325 PF13614 AAA domain H9J98_19325 PF13807 G-rich domain on putative tyrosine kinase H9J98_19325 PF02706 Chain length determinant protein H9J98_19340 PF02397 Bacterial sugar transferase H9J98_19345 PF08402 TOBE domain H9J98_19345 PF00005 ABC transporter H9J98_19350 PF01547 Bacterial extracellular solute-binding protein H9J98_19355 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_19355 PF14785 Maltose transport system permease protein MalF P2 domain H9J98_19360 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_19390 PF05661 Protein of unknown function (DUF808) H9J98_19395 PF01979 Amidohydrolase family H9J98_19400 PF01679 Proteolipid membrane potential modulator H9J98_19405 PF00111 2Fe-2S iron-sulfur cluster binding domain H9J98_19405 PF03476 MOSC N-terminal beta barrel domain H9J98_19405 PF03473 MOSC domain H9J98_19405 PF03476 MOSC N-terminal beta barrel domain H9J98_19405 PF03473 MOSC domain H9J98_19405 PF00111 2Fe-2S iron-sulfur cluster binding domain H9J98_19410 PF02540 NAD synthase H9J98_19415 PF01467 Cytidylyltransferase-like H9J98_19455 PF00005 ABC transporter H9J98_19460 PF01032 FecCD transport family H9J98_19470 PF02472 Biopolymer transport protein ExbD/TolR H9J98_19475 PF01618 MotA/TolQ/ExbB proton channel family H9J98_19480 PF03544 Gram-negative bacterial TonB protein C-terminal H9J98_19485 PF04055 Radical SAM superfamily H9J98_19490 PF06228 Haem utilisation ChuX/HutX H9J98_19495 PF01243 Pyridoxamine 5'-phosphate oxidase H9J98_19505 PF01584 CheW-like domain H9J98_19505 PF00072 Response regulator receiver domain H9J98_19525 PF00082 Subtilase family H9J98_19545 PF00141 Peroxidase H9J98_19550 PF00210 Ferritin-like domain H9J98_19555 PF03466 LysR substrate binding domain H9J98_19555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_19570 PF04151 Bacterial pre-peptidase C-terminal domain H9J98_19570 PF08453 Peptidase family M9 N-terminal H9J98_19570 PF01752 Collagenase H9J98_19580 PF00128 Alpha amylase, catalytic domain H9J98_19595 PF02254 TrkA-N domain H9J98_19595 PF00999 Sodium/hydrogen exchanger family H9J98_19600 PF02525 Flavodoxin-like fold H9J98_19605 PF00582 Universal stress protein family H9J98_19610 PF00005 ABC transporter H9J98_19610 PF12848 ABC transporter H9J98_19610 PF16326 ABC transporter C-terminal domain H9J98_19615 PF00326 Prolyl oligopeptidase family H9J98_19615 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain H9J98_19630 PF13533 Biotin-lipoyl like H9J98_19635 PF00873 AcrB/AcrD/AcrF family H9J98_19640 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) H9J98_19650 PF13302 Acetyltransferase (GNAT) domain H9J98_19660 PF00990 Diguanylate cyclase, GGDEF domain H9J98_19680 PF00873 AcrB/AcrD/AcrF family H9J98_19700 PF12838 4Fe-4S dicluster domain H9J98_19700 PF04879 Molybdopterin oxidoreductase Fe4S4 domain H9J98_19700 PF01568 Molydopterin dinucleotide binding domain H9J98_19700 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region H9J98_19700 PF00384 Molybdopterin oxidoreductase H9J98_19720 PF00005 ABC transporter H9J98_19730 PF00672 HAMP domain H9J98_19730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9J98_19730 PF17200 Single Cache domain 2 H9J98_19735 PF10282 Lactonase, 7-bladed beta-propeller H9J98_19740 PF02567 Phenazine biosynthesis-like protein H9J98_19745 PF01161 Phosphatidylethanolamine-binding protein H9J98_19755 PF01758 Sodium Bile acid symporter family H9J98_19770 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 H9J98_19775 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit H9J98_19775 PF02378 Phosphotransferase system, EIIC H9J98_19780 PF00107 Zinc-binding dehydrogenase H9J98_19780 PF08240 Alcohol dehydrogenase GroES-like domain H9J98_19815 PF03222 Tryptophan/tyrosine permease family H9J98_19825 PF14490 Helix-hairpin-helix containing domain H9J98_19825 PF13538 UvrD-like helicase C-terminal domain H9J98_19825 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain H9J98_19850 PF00672 HAMP domain H9J98_19850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9J98_19850 PF02743 Cache domain H9J98_19855 PF07670 Nucleoside recognition H9J98_19875 PF01476 LysM domain H9J98_19875 PF08525 Opacity-associated protein A N-terminal motif H9J98_19875 PF01551 Peptidase family M23 H9J98_19895 PF03466 LysR substrate binding domain H9J98_19895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_19900 PF07690 Major Facilitator Superfamily H9J98_19910 PF00462 Glutaredoxin H9J98_19915 PF00892 EamA-like transporter family H9J98_19920 PF00267 Gram-negative porin H9J98_19930 PF01557 Fumarylacetoacetate (FAA) hydrolase family H9J98_19945 PF12833 Helix-turn-helix domain H9J98_19950 PF01810 LysE type translocator H9J98_19965 PF06426 Serine acetyltransferase, N-terminal H9J98_19965 PF00132 Bacterial transferase hexapeptide (six repeats) H9J98_19970 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II H9J98_19970 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III H9J98_19970 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I H9J98_19970 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain H9J98_19975 PF02790 Cytochrome C oxidase subunit II, transmembrane domain H9J98_19975 PF00116 Cytochrome C oxidase subunit II, periplasmic domain H9J98_19985 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 H9J98_19990 PF00510 Cytochrome c oxidase subunit III H9J98_20010 PF02628 Cytochrome oxidase assembly protein H9J98_20015 PF01040 UbiA prenyltransferase family H9J98_20020 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase H9J98_20020 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase H9J98_20050 PF00313 'Cold-shock' DNA-binding domain H9J98_20055 PF03889 Alternative ribosome-rescue factor A H9J98_20060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9J98_20060 PF08447 PAS fold H9J98_20060 PF13426 PAS domain H9J98_20065 PF00990 Diguanylate cyclase, GGDEF domain H9J98_20080 PF12704 MacB-like periplasmic core domain H9J98_20080 PF00005 ABC transporter H9J98_20080 PF02687 FtsX-like permease family H9J98_20085 PF02687 FtsX-like permease family H9J98_20085 PF12704 MacB-like periplasmic core domain H9J98_20085 PF00005 ABC transporter H9J98_20095 PF00672 HAMP domain H9J98_20095 PF17200 Single Cache domain 2 H9J98_20095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9J98_20100 PF00210 Ferritin-like domain H9J98_20110 PF07995 Glucose / Sorbosone dehydrogenase H9J98_20115 PF00465 Iron-containing alcohol dehydrogenase H9J98_20130 PF00892 EamA-like transporter family H9J98_20145 PF03466 LysR substrate binding domain H9J98_20145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_20155 PF13193 AMP-binding enzyme C-terminal domain H9J98_20155 PF00501 AMP-binding enzyme H9J98_20160 PF00351 Biopterin-dependent aromatic amino acid hydroxylase H9J98_20165 PF01329 Pterin 4 alpha carbinolamine dehydratase H9J98_20185 PF12843 Putative quorum-sensing-regulated virulence factor H9J98_20190 PF00270 DEAD/DEAH box helicase H9J98_20190 PF00271 Helicase conserved C-terminal domain H9J98_20195 PF09905 DNA-binding protein VF530 H9J98_20200 PF00291 Pyridoxal-phosphate dependent enzyme H9J98_20210 PF01470 Pyroglutamyl peptidase H9J98_20220 PF02492 CobW/HypB/UreG, nucleotide-binding domain H9J98_20220 PF07683 Cobalamin synthesis protein cobW C-terminal domain H9J98_20225 PF00270 DEAD/DEAH box helicase H9J98_20225 PF00271 Helicase conserved C-terminal domain H9J98_20245 PF00563 EAL domain H9J98_20245 PF12792 CSS motif domain associated with EAL H9J98_20250 PF00005 ABC transporter H9J98_20255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9J98_20255 PF12729 Four helix bundle sensory module for signal transduction H9J98_20255 PF00672 HAMP domain H9J98_20265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_20265 PF03466 LysR substrate binding domain H9J98_20270 PF00884 Sulfatase H9J98_20275 PF04055 Radical SAM superfamily H9J98_20275 PF13186 Iron-sulfur cluster-binding domain H9J98_20280 PF03466 LysR substrate binding domain H9J98_20280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_20300 PF00589 Phage integrase family H9J98_20300 PF14659 Phage integrase, N-terminal SAM-like domain H9J98_20345 PF01575 MaoC like domain H9J98_20350 PF12849 PBP superfamily domain H9J98_20360 PF12833 Helix-turn-helix domain H9J98_20365 PF08206 Ribonuclease B OB domain H9J98_20365 PF00773 RNB domain H9J98_20365 PF00575 S1 RNA binding domain H9J98_20370 PF03880 DbpA RNA binding domain H9J98_20370 PF00270 DEAD/DEAH box helicase H9J98_20370 PF00271 Helicase conserved C-terminal domain H9J98_20375 PF00563 EAL domain H9J98_20375 PF00990 Diguanylate cyclase, GGDEF domain H9J98_20375 PF13426 PAS domain H9J98_20380 PF00871 Acetokinase family H9J98_20385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9J98_20385 PF08447 PAS fold H9J98_20385 PF13426 PAS domain H9J98_20395 PF10063 Uncharacterized integral membrane protein (DUF2301) H9J98_20400 PF00682 HMGL-like H9J98_20405 PF00378 Enoyl-CoA hydratase/isomerase H9J98_20410 PF01039 Carboxyl transferase domain H9J98_20415 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H9J98_20415 PF02770 Acyl-CoA dehydrogenase, middle domain H9J98_20415 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H9J98_20420 PF00376 MerR family regulatory protein H9J98_20420 PF09278 MerR, DNA binding H9J98_20425 PF00108 Thiolase, N-terminal domain H9J98_20425 PF02803 Thiolase, C-terminal domain H9J98_20430 PF00171 Aldehyde dehydrogenase family H9J98_20435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H9J98_20435 PF02770 Acyl-CoA dehydrogenase, middle domain H9J98_20435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H9J98_20440 PF00378 Enoyl-CoA hydratase/isomerase H9J98_20445 PF00378 Enoyl-CoA hydratase/isomerase H9J98_20450 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase H9J98_20450 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase H9J98_20460 PF00116 Cytochrome C oxidase subunit II, periplasmic domain H9J98_20460 PF06481 COX Aromatic Rich Motif H9J98_20465 PF00115 Cytochrome C and Quinol oxidase polypeptide I H9J98_20470 PF00510 Cytochrome c oxidase subunit III H9J98_20480 PF01040 UbiA prenyltransferase family H9J98_20495 PF00724 NADH:flavin oxidoreductase / NADH oxidase family H9J98_20500 PF08031 Berberine and berberine like H9J98_20500 PF01565 FAD binding domain H9J98_20505 PF00005 ABC transporter H9J98_20510 PF00497 Bacterial extracellular solute-binding proteins, family 3 H9J98_20515 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_20520 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_20530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_20530 PF03466 LysR substrate binding domain H9J98_20535 PF00043 Glutathione S-transferase, C-terminal domain H9J98_20535 PF02798 Glutathione S-transferase, N-terminal domain H9J98_20545 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) H9J98_20545 PF00364 Biotin-requiring enzyme H9J98_20545 PF02817 e3 binding domain H9J98_20550 PF02780 Transketolase, C-terminal domain H9J98_20550 PF02779 Transketolase, pyrimidine binding domain H9J98_20555 PF00676 Dehydrogenase E1 component H9J98_20570 PF00012 Hsp70 protein H9J98_20575 PF04314 Copper chaperone PCu(A)C H9J98_20600 PF00486 Transcriptional regulatory protein, C terminal H9J98_20600 PF00072 Response regulator receiver domain H9J98_20615 PF00245 Alkaline phosphatase H9J98_20625 PF01483 Proprotein convertase P-domain H9J98_20625 PF00082 Subtilase family H9J98_20635 PF00072 Response regulator receiver domain H9J98_20635 PF00990 Diguanylate cyclase, GGDEF domain H9J98_20640 PF03222 Tryptophan/tyrosine permease family H9J98_20645 PF00583 Acetyltransferase (GNAT) family H9J98_20650 PF04879 Molybdopterin oxidoreductase Fe4S4 domain H9J98_20650 PF00384 Molybdopterin oxidoreductase H9J98_20650 PF01568 Molydopterin dinucleotide binding domain H9J98_20655 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases H9J98_20655 PF14824 Sirohaem biosynthesis protein central H9J98_20655 PF10414 Sirohaem synthase dimerisation region H9J98_20660 PF02885 Glycosyl transferase family, helical bundle domain H9J98_20660 PF00591 Glycosyl transferase family, a/b domain H9J98_20665 PF01738 Dienelactone hydrolase family H9J98_20670 PF08376 Nitrate and nitrite sensing H9J98_20670 PF03861 ANTAR domain H9J98_20675 PF00005 ABC transporter H9J98_20680 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_20685 PF00005 ABC transporter H9J98_20690 PF04324 BFD-like [2Fe-2S] binding domain H9J98_20690 PF01077 Nitrite and sulphite reductase 4Fe-4S domain H9J98_20690 PF07992 Pyridine nucleotide-disulphide oxidoreductase H9J98_20690 PF18267 Rubredoxin NAD+ reductase C-terminal domain H9J98_20690 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain H9J98_20690 PF13806 Rieske-like [2Fe-2S] domain H9J98_20705 PF08361 MAATS-type transcriptional repressor, C-terminal region H9J98_20705 PF00440 Bacterial regulatory proteins, tetR family H9J98_20720 PF00211 Adenylate and Guanylate cyclase catalytic domain H9J98_20720 PF00072 Response regulator receiver domain H9J98_20740 PF03793 PASTA domain H9J98_20740 PF00069 Protein kinase domain H9J98_20755 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE H9J98_20760 PF00691 OmpA family H9J98_20760 PF13677 Membrane MotB of proton-channel complex MotA/MotB H9J98_20765 PF06744 Type VI secretion protein IcmF C-terminal H9J98_20765 PF14331 ImcF-related N-terminal domain H9J98_20765 PF06761 Intracellular multiplication and human macrophage-killing H9J98_20785 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 H9J98_20790 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath H9J98_20795 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath H9J98_20810 PF05947 Type VI secretion system, TssF H9J98_20820 PF00004 ATPase family associated with various cellular activities (AAA) H9J98_20820 PF07724 AAA domain (Cdc48 subfamily) H9J98_20820 PF17871 AAA lid domain H9J98_20820 PF10431 C-terminal, D2-small domain, of ClpB protein H9J98_20830 PF06715 Gp5 C-terminal repeat (3 copies) H9J98_20830 PF04717 Type VI secretion system, phage-baseplate injector H9J98_20845 PF00149 Calcineurin-like phosphoesterase H9J98_20845 PF12320 Type 5 capsule protein repressor C-terminal domain H9J98_20850 PF13476 AAA domain H9J98_20870 PF08212 Lipocalin-like domain H9J98_20880 PF07690 Major Facilitator Superfamily H9J98_20890 PF03606 C4-dicarboxylate anaerobic carrier H9J98_20895 PF00034 Cytochrome c H9J98_20900 PF01212 Beta-eliminating lyase H9J98_20910 PF07728 AAA domain (dynein-related subfamily) H9J98_20910 PF17868 AAA lid domain H9J98_20910 PF12592 Protein of unknown function (DUF3763) H9J98_20915 PF05762 VWA domain containing CoxE-like protein H9J98_20930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_20930 PF03466 LysR substrate binding domain H9J98_20935 PF09330 D-lactate dehydrogenase, membrane binding H9J98_20935 PF01565 FAD binding domain H9J98_20950 PF00842 Alanine racemase, C-terminal domain H9J98_20950 PF01168 Alanine racemase, N-terminal domain H9J98_20955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9J98_20955 PF00672 HAMP domain H9J98_20995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9J98_21015 PF09154 Domain of unknown function (DUF1939) H9J98_21015 PF00128 Alpha amylase, catalytic domain H9J98_21035 PF06965 Na+/H+ antiporter 1 H9J98_21035 PF13462 Thioredoxin H9J98_21070 PF14760 Rnk N-terminus H9J98_21070 PF01272 Transcription elongation factor, GreA/GreB, C-term H9J98_21075 PF18267 Rubredoxin NAD+ reductase C-terminal domain H9J98_21075 PF07992 Pyridine nucleotide-disulphide oxidoreductase H9J98_21075 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain H9J98_21075 PF01077 Nitrite and sulphite reductase 4Fe-4S domain H9J98_21075 PF04324 BFD-like [2Fe-2S] binding domain H9J98_21080 PF13806 Rieske-like [2Fe-2S] domain H9J98_21085 PF01226 Formate/nitrite transporter H9J98_21090 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases H9J98_21090 PF10414 Sirohaem synthase dimerisation region H9J98_21090 PF14824 Sirohaem biosynthesis protein central H9J98_21105 PF03605 Anaerobic c4-dicarboxylate membrane transporter H9J98_21115 PF07715 TonB-dependent Receptor Plug Domain H9J98_21115 PF00593 TonB dependent receptor H9J98_21130 PF11756 Nitrous oxide-stimulated promoter H9J98_21135 PF01554 MatE H9J98_21145 PF07690 Major Facilitator Superfamily H9J98_21150 PF00085 Thioredoxin H9J98_21155 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal H9J98_21155 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III H9J98_21175 PF01238 Phosphomannose isomerase type I H9J98_21180 PF07690 Major Facilitator Superfamily H9J98_21185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_21185 PF07730 Histidine kinase H9J98_21185 PF05231 MASE1 H9J98_21190 PF00072 Response regulator receiver domain H9J98_21190 PF00196 Bacterial regulatory proteins, luxR family H9J98_21195 PF07690 Major Facilitator Superfamily H9J98_21200 PF02634 FdhD/NarQ family H9J98_21205 PF03466 LysR substrate binding domain H9J98_21205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_21210 PF00384 Molybdopterin oxidoreductase H9J98_21215 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain H9J98_21215 PF07992 Pyridine nucleotide-disulphide oxidoreductase H9J98_21230 PF04143 Sulphur transport H9J98_21240 PF00873 AcrB/AcrD/AcrF family H9J98_21245 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H9J98_21255 PF03477 ATP cone domain H9J98_21255 PF13597 Anaerobic ribonucleoside-triphosphate reductase H9J98_21265 PF01554 MatE H9J98_21270 PF12833 Helix-turn-helix domain H9J98_21275 PF00155 Aminotransferase class I and II H9J98_21280 PF08443 RimK-like ATP-grasp domain H9J98_21280 PF18030 RimK PreATP-grasp domain H9J98_21290 PF04076 Bacterial OB fold (BOF) protein H9J98_21295 PF07685 CobB/CobQ-like glutamine amidotransferase domain H9J98_21305 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_21310 PF00005 ABC transporter H9J98_21310 PF03459 TOBE domain H9J98_21320 PF00990 Diguanylate cyclase, GGDEF domain H9J98_21320 PF01590 GAF domain H9J98_21320 PF00563 EAL domain H9J98_21320 PF00360 Phytochrome region H9J98_21330 PF00990 Diguanylate cyclase, GGDEF domain H9J98_21345 PF01262 Alanine dehydrogenase/PNT, C-terminal domain H9J98_21345 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch H9J98_21345 PF05222 Alanine dehydrogenase/PNT, N-terminal domain H9J98_21350 PF02233 NAD(P) transhydrogenase beta subunit H9J98_21365 PF00072 Response regulator receiver domain H9J98_21365 PF00486 Transcriptional regulatory protein, C terminal H9J98_21380 PF03701 Uncharacterised protein family (UPF0181) H9J98_21385 PF00582 Universal stress protein family H9J98_21395 PF01610 Transposase H9J98_21395 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 H9J98_21395 PF13542 Helix-turn-helix domain of transposase family ISL3 H9J98_21400 PF01253 Translation initiation factor SUI1 H9J98_21410 PF01820 D-ala D-ala ligase N-terminus H9J98_21410 PF07478 D-ala D-ala ligase C-terminus H9J98_21420 PF00583 Acetyltransferase (GNAT) family H9J98_21420 PF13607 Succinyl-CoA ligase like flavodoxin domain H9J98_21420 PF13380 CoA binding domain H9J98_21425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_21425 PF03466 LysR substrate binding domain H9J98_21430 PF07715 TonB-dependent Receptor Plug Domain H9J98_21430 PF00593 TonB dependent receptor H9J98_21435 PF16363 GDP-mannose 4,6 dehydratase H9J98_21440 PF05231 MASE1 H9J98_21440 PF00563 EAL domain H9J98_21440 PF08448 PAS fold H9J98_21440 PF13426 PAS domain H9J98_21440 PF00990 Diguanylate cyclase, GGDEF domain H9J98_21440 PF08447 PAS fold H9J98_21445 PF03746 LamB/YcsF family H9J98_21450 PF02682 Carboxyltransferase domain, subdomain C and D H9J98_21455 PF02626 Carboxyltransferase domain, subdomain A and B H9J98_21470 PF00005 ABC transporter H9J98_21475 PF13472 GDSL-like Lipase/Acylhydrolase family H9J98_21480 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase H9J98_21480 PF07055 Enoyl reductase FAD binding domain H9J98_21480 PF12241 Trans-2-enoyl-CoA reductase catalytic region H9J98_21485 PF00563 EAL domain H9J98_21485 PF00990 Diguanylate cyclase, GGDEF domain H9J98_21485 PF03707 Bacterial signalling protein N terminal repeat H9J98_21485 PF13188 PAS domain H9J98_21495 PF00226 DnaJ domain H9J98_21495 PF01556 DnaJ C terminal domain H9J98_21495 PF00684 DnaJ central domain H9J98_21520 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle H9J98_21520 PF12793 Sugar transport-related sRNA regulator N-term H9J98_21530 PF03061 Thioesterase superfamily H9J98_21545 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) H9J98_21550 PF12262 Bacterial virulence factor lipase N-terminal H9J98_21570 PF03741 Integral membrane protein TerC family H9J98_21575 PF02872 5'-nucleotidase, C-terminal domain H9J98_21575 PF00149 Calcineurin-like phosphoesterase H9J98_21580 PF11398 Protein of unknown function (DUF2813) H9J98_21585 PF06496 Protein of unknown function (DUF1097) H9J98_21590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_21590 PF03466 LysR substrate binding domain H9J98_21595 PF01226 Formate/nitrite transporter H9J98_21600 PF04264 YceI-like domain H9J98_21605 PF01292 Prokaryotic cytochrome b561 H9J98_21620 PF00563 EAL domain H9J98_21620 PF12792 CSS motif domain associated with EAL H9J98_21625 PF00270 DEAD/DEAH box helicase H9J98_21625 PF00271 Helicase conserved C-terminal domain H9J98_21630 PF04336 Acyl carrier protein phosphodiesterase H9J98_21635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9J98_21640 PF13419 Haloacid dehalogenase-like hydrolase H9J98_21645 PF11849 Domain of unknown function (DUF3369) H9J98_21725 PF11799 impB/mucB/samB family C-terminal domain H9J98_21725 PF13438 Domain of unknown function (DUF4113) H9J98_21725 PF00817 impB/mucB/samB family H9J98_21730 PF00717 Peptidase S24-like H9J98_21750 PF02954 Bacterial regulatory protein, Fis family H9J98_21820 PF01797 Transposase IS200 like H9J98_21850 PF00294 pfkB family carbohydrate kinase H9J98_21855 PF01268 Formate--tetrahydrofolate ligase H9J98_21860 PF00483 Nucleotidyl transferase H9J98_21865 PF00704 Glycosyl hydrolases family 18 H9J98_21865 PF06483 Chitinase C H9J98_21870 PF06719 AraC-type transcriptional regulator N-terminus H9J98_21870 PF12833 Helix-turn-helix domain H9J98_21875 PF00465 Iron-containing alcohol dehydrogenase H9J98_21885 PF02954 Bacterial regulatory protein, Fis family H9J98_21885 PF14532 Sigma-54 interaction domain H9J98_21885 PF00072 Response regulator receiver domain H9J98_21890 PF00512 His Kinase A (phospho-acceptor) domain H9J98_21890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_21890 PF00672 HAMP domain H9J98_21900 PF07690 Major Facilitator Superfamily H9J98_21905 PF02887 Pyruvate kinase, alpha/beta domain H9J98_21905 PF00224 Pyruvate kinase, barrel domain H9J98_21910 PF00005 ABC transporter H9J98_21915 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_21920 PF00497 Bacterial extracellular solute-binding proteins, family 3 H9J98_21925 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_21930 PF00989 PAS fold H9J98_21930 PF00990 Diguanylate cyclase, GGDEF domain H9J98_21930 PF01590 GAF domain H9J98_21930 PF00563 EAL domain H9J98_21945 PF00356 Bacterial regulatory proteins, lacI family H9J98_21945 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family H9J98_21950 PF00381 PTS HPr component phosphorylation site H9J98_21950 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 H9J98_21955 PF00294 pfkB family carbohydrate kinase H9J98_21960 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit H9J98_21960 PF02378 Phosphotransferase system, EIIC H9J98_21970 PF00873 AcrB/AcrD/AcrF family H9J98_21990 PF08669 Glycine cleavage T-protein C-terminal barrel domain H9J98_21990 PF01571 Aminomethyltransferase folate-binding domain H9J98_22000 PF00464 Serine hydroxymethyltransferase H9J98_22005 PF01597 Glycine cleavage H-protein H9J98_22010 PF02347 Glycine cleavage system P-protein H9J98_22015 PF00158 Sigma-54 interaction domain H9J98_22015 PF00072 Response regulator receiver domain H9J98_22015 PF02954 Bacterial regulatory protein, Fis family H9J98_22035 PF00313 'Cold-shock' DNA-binding domain H9J98_22065 PF01039 Carboxyl transferase domain H9J98_22065 PF17848 Acetyl-coA carboxylase zinc finger domain H9J98_22070 PF03466 LysR substrate binding domain H9J98_22070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_22075 PF11490 DNA polymerase III polC-type N-terminus II H9J98_22075 PF07733 Bacterial DNA polymerase III alpha NTPase domain H9J98_22075 PF14579 Helix-hairpin-helix motif H9J98_22075 PF02811 PHP domain H9J98_22075 PF17657 Bacterial DNA polymerase III alpha subunit finger domain H9J98_22075 PF00929 Exonuclease H9J98_22080 PF00664 ABC transporter transmembrane region H9J98_22080 PF00005 ABC transporter H9J98_22100 PF02253 Phospholipase A1 H9J98_22110 PF00376 MerR family regulatory protein H9J98_22110 PF09278 MerR, DNA binding H9J98_22115 PF01327 Polypeptide deformylase H9J98_22135 PF01769 Divalent cation transporter H9J98_22135 PF03448 MgtE intracellular N domain H9J98_22135 PF00571 CBS domain H9J98_22155 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H9J98_22160 PF00724 NADH:flavin oxidoreductase / NADH oxidase family H9J98_22170 PF01757 Acyltransferase family H9J98_22180 PF09722 Protein of unknown function (DUF2384) H9J98_22185 PF00141 Peroxidase H9J98_22190 PF13187 4Fe-4S dicluster domain H9J98_22190 PF01645 Conserved region in glutamate synthase H9J98_22200 PF12431 Transcriptional regulator H9J98_22200 PF00072 Response regulator receiver domain H9J98_22205 PF00989 PAS fold H9J98_22205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_22205 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain H9J98_22205 PF17203 Single cache domain 3 H9J98_22210 PF00939 Sodium:sulfate symporter transmembrane region H9J98_22215 PF00171 Aldehyde dehydrogenase family H9J98_22235 PF00892 EamA-like transporter family H9J98_22240 PF00893 Small Multidrug Resistance protein H9J98_22245 PF07504 Fungalysin/Thermolysin Propeptide Motif H9J98_22245 PF04151 Bacterial pre-peptidase C-terminal domain H9J98_22245 PF01447 Thermolysin metallopeptidase, catalytic domain H9J98_22245 PF02868 Thermolysin metallopeptidase, alpha-helical domain H9J98_22245 PF03413 Peptidase propeptide and YPEB domain H9J98_22255 PF01569 PAP2 superfamily H9J98_22265 PF00892 EamA-like transporter family H9J98_22280 PF01584 CheW-like domain H9J98_22280 PF00072 Response regulator receiver domain H9J98_22300 PF00072 Response regulator receiver domain H9J98_22300 PF00196 Bacterial regulatory proteins, luxR family H9J98_22310 PF00990 Diguanylate cyclase, GGDEF domain H9J98_22315 PF00072 Response regulator receiver domain H9J98_22315 PF00196 Bacterial regulatory proteins, luxR family H9J98_22320 PF00990 Diguanylate cyclase, GGDEF domain H9J98_22320 PF00563 EAL domain H9J98_22320 PF03707 Bacterial signalling protein N terminal repeat H9J98_22320 PF13188 PAS domain H9J98_22325 PF09456 RcsC Alpha-Beta-Loop (ABL) H9J98_22325 PF00072 Response regulator receiver domain H9J98_22325 PF00512 His Kinase A (phospho-acceptor) domain H9J98_22325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_22340 PF00691 OmpA family H9J98_22340 PF05736 OprF membrane domain H9J98_22355 PF03606 C4-dicarboxylate anaerobic carrier H9J98_22360 PF04011 LemA family H9J98_22365 PF01435 Peptidase family M48 H9J98_22380 PF08774 VRR-NUC domain H9J98_22380 PF18081 Fanconi anemia-associated nuclease SAP domain H9J98_22390 PF04055 Radical SAM superfamily H9J98_22390 PF13186 Iron-sulfur cluster-binding domain H9J98_22405 PF04076 Bacterial OB fold (BOF) protein H9J98_22410 PF00781 Diacylglycerol kinase catalytic domain H9J98_22415 PF03466 LysR substrate binding domain H9J98_22415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_22420 PF01872 RibD C-terminal domain H9J98_22420 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region H9J98_22435 PF00092 von Willebrand factor type A domain H9J98_22450 PF07726 ATPase family associated with various cellular activities (AAA) H9J98_22450 PF17863 AAA lid domain H9J98_22455 PF04055 Radical SAM superfamily H9J98_22455 PF13186 Iron-sulfur cluster-binding domain H9J98_22460 PF00884 Sulfatase H9J98_22465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_22465 PF03466 LysR substrate binding domain H9J98_22475 PF00884 Sulfatase H9J98_22480 PF16385 Domain of unknown function H9J98_22480 PF00884 Sulfatase H9J98_22485 PF00072 Response regulator receiver domain H9J98_22485 PF00486 Transcriptional regulatory protein, C terminal H9J98_22500 PF00672 HAMP domain H9J98_22500 PF00072 Response regulator receiver domain H9J98_22500 PF01627 Hpt domain H9J98_22500 PF00512 His Kinase A (phospho-acceptor) domain H9J98_22500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_22505 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family H9J98_22510 PF02142 MGS-like domain H9J98_22515 PF13361 UvrD-like helicase C-terminal domain H9J98_22515 PF12462 DNA helicase IV / RNA helicase N terminal H9J98_22515 PF00580 UvrD/REP helicase N-terminal domain H9J98_22520 PF12805 FUSC-like inner membrane protein yccS H9J98_22550 PF00593 TonB dependent receptor H9J98_22550 PF07715 TonB-dependent Receptor Plug Domain H9J98_22560 PF13411 MerR HTH family regulatory protein H9J98_22565 PF00005 ABC transporter H9J98_22570 PF01032 FecCD transport family H9J98_22575 PF01032 FecCD transport family H9J98_22580 PF01497 Periplasmic binding protein H9J98_22590 PF01048 Phosphorylase superfamily H9J98_22595 PF04973 Nicotinamide mononucleotide transporter H9J98_22605 PF00356 Bacterial regulatory proteins, lacI family H9J98_22610 PF00294 pfkB family carbohydrate kinase H9J98_22615 PF13407 Periplasmic binding protein domain H9J98_22620 PF02653 Branched-chain amino acid transport system / permease component H9J98_22625 PF00005 ABC transporter H9J98_22630 PF05025 RbsD / FucU transport protein family H9J98_22635 PF00563 EAL domain H9J98_22635 PF00990 Diguanylate cyclase, GGDEF domain H9J98_22640 PF01048 Phosphorylase superfamily H9J98_22680 PF04116 Fatty acid hydroxylase superfamily H9J98_22695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_22695 PF00512 His Kinase A (phospho-acceptor) domain H9J98_22695 PF09308 LuxQ, periplasmic H9J98_22695 PF00072 Response regulator receiver domain H9J98_22700 PF03150 Di-haem cytochrome c peroxidase H9J98_22700 PF00034 Cytochrome c H9J98_22705 PF03707 Bacterial signalling protein N terminal repeat H9J98_22705 PF00563 EAL domain H9J98_22705 PF00990 Diguanylate cyclase, GGDEF domain H9J98_22705 PF13188 PAS domain H9J98_22715 PF16200 C-terminal region of band_7 H9J98_22715 PF01145 SPFH domain / Band 7 family H9J98_22725 PF00881 Nitroreductase family H9J98_22730 PF00005 ABC transporter H9J98_22730 PF00571 CBS domain H9J98_22735 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_22740 PF04069 Substrate binding domain of ABC-type glycine betaine transport system H9J98_22760 PF00171 Aldehyde dehydrogenase family H9J98_22765 PF00440 Bacterial regulatory proteins, tetR family H9J98_22765 PF13977 BetI-type transcriptional repressor, C-terminal H9J98_22770 PF17151 Periplasmic sensor domain H9J98_22770 PF00990 Diguanylate cyclase, GGDEF domain H9J98_22780 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase H9J98_22780 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase H9J98_22790 PF00378 Enoyl-CoA hydratase/isomerase H9J98_22795 PF02770 Acyl-CoA dehydrogenase, middle domain H9J98_22795 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H9J98_22795 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H9J98_22800 PF00171 Aldehyde dehydrogenase family H9J98_22805 PF00108 Thiolase, N-terminal domain H9J98_22805 PF02803 Thiolase, C-terminal domain H9J98_22810 PF00376 MerR family regulatory protein H9J98_22810 PF09278 MerR, DNA binding H9J98_22815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H9J98_22815 PF02770 Acyl-CoA dehydrogenase, middle domain H9J98_22815 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H9J98_22820 PF01039 Carboxyl transferase domain H9J98_22825 PF00378 Enoyl-CoA hydratase/isomerase H9J98_22830 PF02785 Biotin carboxylase C-terminal domain H9J98_22830 PF00289 Biotin carboxylase, N-terminal domain H9J98_22830 PF00364 Biotin-requiring enzyme H9J98_22830 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain H9J98_22830 PF18140 Propionyl-coenzyme A carboxylase BT domain H9J98_22835 PF00682 HMGL-like H9J98_22840 PF00072 Response regulator receiver domain H9J98_22840 PF00512 His Kinase A (phospho-acceptor) domain H9J98_22840 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) H9J98_22840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_22840 PF00672 HAMP domain H9J98_22840 PF01627 Hpt domain H9J98_22855 PF00924 Mechanosensitive ion channel H9J98_22855 PF12795 Mechanosensitive ion channel porin domain H9J98_22855 PF12794 Mechanosensitive ion channel inner membrane domain 1 H9J98_22860 PF14602 Hexapeptide repeat of succinyl-transferase H9J98_22860 PF12464 Maltose acetyltransferase H9J98_22865 PF00155 Aminotransferase class I and II H9J98_22865 PF00392 Bacterial regulatory proteins, gntR family H9J98_22870 PF01654 Cytochrome bd terminal oxidase subunit I H9J98_22875 PF02322 Cytochrome bd terminal oxidase subunit II H9J98_22885 PF02627 Carboxymuconolactone decarboxylase family H9J98_22890 PF13411 MerR HTH family regulatory protein H9J98_22900 PF00034 Cytochrome c H9J98_22905 PF05724 Thiopurine S-methyltransferase (TPMT) H9J98_22910 PF00501 AMP-binding enzyme H9J98_22910 PF14535 AMP-binding enzyme C-terminal domain H9J98_22915 PF00005 ABC transporter H9J98_22940 PF00005 ABC transporter H9J98_22940 PF12399 Branched-chain amino acid ATP-binding cassette transporter H9J98_22950 PF01012 Electron transfer flavoprotein domain H9J98_22955 PF01012 Electron transfer flavoprotein domain H9J98_22955 PF00766 Electron transfer flavoprotein FAD-binding domain H9J98_22960 PF13193 AMP-binding enzyme C-terminal domain H9J98_22960 PF00501 AMP-binding enzyme H9J98_22965 PF00478 IMP dehydrogenase / GMP reductase domain H9J98_22970 PF03853 YjeF-related protein N-terminus H9J98_22970 PF01256 Carbohydrate kinase H9J98_22980 PF00072 Response regulator receiver domain H9J98_22985 PF00248 Aldo/keto reductase family H9J98_23000 PF00654 Voltage gated chloride channel H9J98_23010 PF01566 Natural resistance-associated macrophage protein H9J98_23015 PF01227 GTP cyclohydrolase I H9J98_23020 PF03453 MoeA N-terminal region (domain I and II) H9J98_23020 PF03454 MoeA C-terminal region (domain IV) H9J98_23020 PF00994 Probable molybdopterin binding domain H9J98_23025 PF00899 ThiF family H9J98_23040 PF00581 Rhodanese-like domain H9J98_23045 PF00990 Diguanylate cyclase, GGDEF domain H9J98_23045 PF03707 Bacterial signalling protein N terminal repeat H9J98_23045 PF00563 EAL domain H9J98_23050 PF08329 Chitinase A, N-terminal domain H9J98_23050 PF00704 Glycosyl hydrolases family 18 H9J98_23060 PF00923 Transaldolase/Fructose-6-phosphate aldolase H9J98_23065 PF00456 Transketolase, thiamine diphosphate binding domain H9J98_23065 PF02779 Transketolase, pyrimidine binding domain H9J98_23065 PF02780 Transketolase, C-terminal domain H9J98_23070 PF08447 PAS fold H9J98_23070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9J98_23075 PF07690 Major Facilitator Superfamily H9J98_23080 PF00793 DAHP synthetase I family H9J98_23085 PF01389 OmpA-like transmembrane domain H9J98_23085 PF00691 OmpA family H9J98_23090 PF13419 Haloacid dehalogenase-like hydrolase H9J98_23095 PF00472 RF-1 domain H9J98_23100 PF00672 HAMP domain H9J98_23100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9J98_23100 PF12729 Four helix bundle sensory module for signal transduction H9J98_23105 PF00873 AcrB/AcrD/AcrF family H9J98_23110 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H9J98_23115 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region H9J98_23120 PF01546 Peptidase family M20/M25/M40 H9J98_23120 PF07687 Peptidase dimerisation domain H9J98_23135 PF00072 Response regulator receiver domain H9J98_23135 PF00196 Bacterial regulatory proteins, luxR family H9J98_23140 PF07730 Histidine kinase H9J98_23140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_23140 PF00672 HAMP domain H9J98_23140 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term H9J98_23145 PF12838 4Fe-4S dicluster domain H9J98_23145 PF13187 4Fe-4S dicluster domain H9J98_23155 PF00384 Molybdopterin oxidoreductase H9J98_23155 PF01568 Molydopterin dinucleotide binding domain H9J98_23155 PF04879 Molybdopterin oxidoreductase Fe4S4 domain H9J98_23160 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) H9J98_23165 PF03264 NapC/NirT cytochrome c family, N-terminal region H9J98_23175 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus H9J98_23175 PF00561 alpha/beta hydrolase fold H9J98_23185 PF00108 Thiolase, N-terminal domain H9J98_23185 PF02803 Thiolase, C-terminal domain H9J98_23190 PF00106 short chain dehydrogenase H9J98_23200 PF01810 LysE type translocator H9J98_23210 PF02355 Protein export membrane protein H9J98_23210 PF07549 SecD/SecF GG Motif H9J98_23215 PF13721 SecD export protein N-terminal TM region H9J98_23215 PF02355 Protein export membrane protein H9J98_23215 PF07549 SecD/SecF GG Motif H9J98_23240 PF01037 Lrp/AsnC ligand binding domain H9J98_23260 PF00529 HlyD membrane-fusion protein of T1SS H9J98_23260 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H9J98_23270 PF00072 Response regulator receiver domain H9J98_23270 PF09308 LuxQ, periplasmic H9J98_23270 PF00512 His Kinase A (phospho-acceptor) domain H9J98_23270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_23275 PF13407 Periplasmic binding protein domain H9J98_23280 PF01541 GIY-YIG catalytic domain H9J98_23285 PF04337 Protein of unknown function, DUF480 H9J98_23295 PF04363 Protein of unknown function (DUF496) H9J98_23300 PF01554 MatE H9J98_23305 PF01408 Oxidoreductase family, NAD-binding Rossmann fold H9J98_23310 PF00072 Response regulator receiver domain H9J98_23310 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) H9J98_23310 PF00512 His Kinase A (phospho-acceptor) domain H9J98_23310 PF00672 HAMP domain H9J98_23310 PF01627 Hpt domain H9J98_23310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_23315 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain H9J98_23315 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain H9J98_23330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_23330 PF03466 LysR substrate binding domain H9J98_23335 PF13404 AsnC-type helix-turn-helix domain H9J98_23335 PF01037 Lrp/AsnC ligand binding domain H9J98_23340 PF13520 Amino acid permease H9J98_23345 PF00155 Aminotransferase class I and II H9J98_23345 PF00392 Bacterial regulatory proteins, gntR family H9J98_23355 PF03109 ABC1 family H9J98_23360 PF01769 Divalent cation transporter H9J98_23360 PF00571 CBS domain H9J98_23360 PF03448 MgtE intracellular N domain H9J98_23365 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin H9J98_23370 PF07969 Amidohydrolase family H9J98_23380 PF01966 HD domain H9J98_23390 PF07690 Major Facilitator Superfamily H9J98_23400 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase H9J98_23405 PF00255 Glutathione peroxidase H9J98_23420 PF01323 DSBA-like thioredoxin domain H9J98_23435 PF00106 short chain dehydrogenase H9J98_23440 PF00072 Response regulator receiver domain H9J98_23440 PF00486 Transcriptional regulatory protein, C terminal H9J98_23445 PF16527 Two-component sensor protein CpxA, periplasmic domain H9J98_23445 PF00672 HAMP domain H9J98_23445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H9J98_23445 PF00512 His Kinase A (phospho-acceptor) domain H9J98_23455 PF01219 Prokaryotic diacylglycerol kinase H9J98_23460 PF08019 Phosphoethanolamine transferase EptA/EptB H9J98_23460 PF00884 Sulfatase H9J98_23465 PF01408 Oxidoreductase family, NAD-binding Rossmann fold H9J98_23490 PF01047 MarR family H9J98_23500 PF01734 Patatin-like phospholipase H9J98_23505 PF02678 Pirin H9J98_23505 PF05726 Pirin C-terminal cupin domain H9J98_23510 PF00313 'Cold-shock' DNA-binding domain H9J98_23520 PF00962 Adenosine/AMP deaminase H9J98_23525 PF08534 Redoxin H9J98_23525 PF00462 Glutaredoxin H9J98_23535 PF07943 Penicillin-binding protein 5, C-terminal domain H9J98_23535 PF00768 D-alanyl-D-alanine carboxypeptidase H9J98_23540 PF02798 Glutathione S-transferase, N-terminal domain H9J98_23545 PF00251 Glycosyl hydrolases family 32 N-terminal domain H9J98_23545 PF08244 Glycosyl hydrolases family 32 C terminal H9J98_23550 PF00294 pfkB family carbohydrate kinase H9J98_23555 PF00367 phosphotransferase system, EIIB H9J98_23555 PF02378 Phosphotransferase system, EIIC H9J98_23560 PF00356 Bacterial regulatory proteins, lacI family H9J98_23565 PF02264 LamB porin H9J98_23565 PF11471 Maltoporin periplasmic N-terminal extension H9J98_23610 PF12833 Helix-turn-helix domain H9J98_23610 PF01497 Periplasmic binding protein H9J98_23615 PF00155 Aminotransferase class I and II H9J98_23635 PF00270 DEAD/DEAH box helicase H9J98_23635 PF00271 Helicase conserved C-terminal domain H9J98_23645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_23645 PF03466 LysR substrate binding domain H9J98_23650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_23650 PF03466 LysR substrate binding domain H9J98_23660 PF00724 NADH:flavin oxidoreductase / NADH oxidase family H9J98_23665 PF08240 Alcohol dehydrogenase GroES-like domain H9J98_23665 PF00107 Zinc-binding dehydrogenase H9J98_23680 PF12833 Helix-turn-helix domain H9J98_23680 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term H9J98_23685 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) H9J98_23700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_23700 PF03466 LysR substrate binding domain H9J98_23705 PF00709 Adenylosuccinate synthetase H9J98_23710 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 H9J98_23710 PF13542 Helix-turn-helix domain of transposase family ISL3 H9J98_23710 PF01610 Transposase H9J98_23715 PF00710 Asparaginase, N-terminal H9J98_23715 PF17763 Glutaminase/Asparaginase C-terminal domain H9J98_23720 PF03618 Kinase/pyrophosphorylase H9J98_23725 PF00391 PEP-utilising enzyme, mobile domain H9J98_23725 PF02896 PEP-utilising enzyme, TIM barrel domain H9J98_23725 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain H9J98_23740 PF00579 tRNA synthetases class I (W and Y) H9J98_23745 PF13416 Bacterial extracellular solute-binding protein H9J98_23755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_23755 PF03466 LysR substrate binding domain H9J98_23760 PF13533 Biotin-lipoyl like H9J98_23780 PF07694 5TMR of 5TMR-LYT H9J98_23780 PF00990 Diguanylate cyclase, GGDEF domain H9J98_23790 PF00196 Bacterial regulatory proteins, luxR family H9J98_23795 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 H9J98_23795 PF00703 Glycosyl hydrolases family 2 H9J98_23795 PF02836 Glycosyl hydrolases family 2, TIM barrel domain H9J98_23795 PF02837 Glycosyl hydrolases family 2, sugar binding domain H9J98_23800 PF02028 BCCT, betaine/carnitine/choline family transporter H9J98_23805 PF00392 Bacterial regulatory proteins, gntR family H9J98_23805 PF07702 UTRA domain H9J98_23830 PF00005 ABC transporter H9J98_23830 PF08402 TOBE domain H9J98_23865 PF00873 AcrB/AcrD/AcrF family H9J98_23870 PF13533 Biotin-lipoyl like H9J98_23875 PF13091 PLD-like domain H9J98_23900 PF00376 MerR family regulatory protein H9J98_23900 PF09278 MerR, DNA binding H9J98_23910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_23910 PF03466 LysR substrate binding domain H9J98_23920 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain H9J98_23920 PF13378 Enolase C-terminal domain-like H9J98_23925 PF03764 Elongation factor G, domain IV H9J98_23925 PF00009 Elongation factor Tu GTP binding domain H9J98_23925 PF03144 Elongation factor Tu domain 2 H9J98_23925 PF00679 Elongation factor G C-terminus H9J98_23925 PF14492 Elongation Factor G, domain II H9J98_23950 PF02001 Protein of unknown function DUF134 H9J98_23955 PF17185 NlpE C-terminal OB domain H9J98_23955 PF04170 NlpE N-terminal domain H9J98_23960 PF06629 MltA-interacting protein MipA H9J98_23970 PF00691 OmpA family H9J98_23970 PF01389 OmpA-like transmembrane domain H9J98_23975 PF03466 LysR substrate binding domain H9J98_23975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_24000 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family H9J98_24000 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain H9J98_24010 PF00857 Isochorismatase family H9J98_24020 PF00199 Catalase H9J98_24020 PF06628 Catalase-related immune-responsive H9J98_24030 PF08220 DeoR-like helix-turn-helix domain H9J98_24030 PF00455 DeoR C terminal sensor domain H9J98_24035 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H9J98_24040 PF01625 Peptide methionine sulfoxide reductase H9J98_24040 PF01641 SelR domain H9J98_24060 PF07971 Glycosyl hydrolase family 92 H9J98_24060 PF17678 Glycosyl hydrolase family 92 N-terminal domain H9J98_24065 PF07971 Glycosyl hydrolase family 92 H9J98_24065 PF17678 Glycosyl hydrolase family 92 N-terminal domain H9J98_24075 PF07971 Glycosyl hydrolase family 92 H9J98_24075 PF17678 Glycosyl hydrolase family 92 N-terminal domain H9J98_24080 PF07971 Glycosyl hydrolase family 92 H9J98_24080 PF17678 Glycosyl hydrolase family 92 N-terminal domain H9J98_24085 PF03060 Nitronate monooxygenase H9J98_24090 PF00149 Calcineurin-like phosphoesterase H9J98_24090 PF02872 5'-nucleotidase, C-terminal domain H9J98_24100 PF08359 YsiA-like protein, C-terminal region H9J98_24100 PF00440 Bacterial regulatory proteins, tetR family H9J98_24115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_24115 PF03466 LysR substrate binding domain H9J98_24120 PF01810 LysE type translocator H9J98_24135 PF00118 TCP-1/cpn60 chaperonin family H9J98_24140 PF00166 Chaperonin 10 Kd subunit H9J98_24145 PF00581 Rhodanese-like domain H9J98_24160 PF01070 FMN-dependent dehydrogenase H9J98_24180 PF00669 Bacterial flagellin N-terminal helical region H9J98_24190 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase H9J98_24190 PF10135 Rod binding protein H9J98_24195 PF02119 Flagellar P-ring protein H9J98_24200 PF02107 Flagellar L-ring protein H9J98_24205 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H9J98_24205 PF00460 Flagella basal body rod protein H9J98_24210 PF00460 Flagella basal body rod protein H9J98_24210 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H9J98_24215 PF00460 Flagella basal body rod protein H9J98_24215 PF07559 Flagellar basal body protein FlaE H9J98_24215 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H9J98_24220 PF13860 FlgD Ig-like domain H9J98_24220 PF13861 FlgD Tudor-like domain H9J98_24220 PF03963 Flagellar hook capping protein - N-terminal region H9J98_24225 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H9J98_24225 PF00460 Flagella basal body rod protein H9J98_24230 PF00460 Flagella basal body rod protein H9J98_24250 PF01464 Transglycosylase SLT domain H9J98_24255 PF08264 Anticodon-binding domain of tRNA H9J98_24255 PF00133 tRNA synthetases class I (I, L, M and V) H9J98_24275 PF03313 Serine dehydratase alpha chain H9J98_24275 PF03315 Serine dehydratase beta chain H9J98_24280 PF00854 POT family H9J98_24290 PF03466 LysR substrate binding domain H9J98_24290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_24300 PF03466 LysR substrate binding domain H9J98_24300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_24305 PF01389 OmpA-like transmembrane domain H9J98_24305 PF00691 OmpA family H9J98_24310 PF00246 Zinc carboxypeptidase H9J98_24310 PF18027 Cytosolic carboxypeptidase N-terminal domain H9J98_24315 PF01266 FAD dependent oxidoreductase H9J98_24325 PF04393 Protein of unknown function (DUF535) H9J98_24340 PF07702 UTRA domain H9J98_24340 PF00392 Bacterial regulatory proteins, gntR family H9J98_24345 PF00528 Binding-protein-dependent transport system inner membrane component H9J98_24350 PF00005 ABC transporter H9J98_24365 PF00266 Aminotransferase class-V H9J98_24370 PF00202 Aminotransferase class-III H9J98_24375 PF13419 Haloacid dehalogenase-like hydrolase H9J98_24380 PF00356 Bacterial regulatory proteins, lacI family H9J98_24385 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 H9J98_24395 PF03611 PTS system sugar-specific permease component H9J98_24405 PF00082 Subtilase family H9J98_24405 PF05922 Peptidase inhibitor I9 H9J98_24410 PF00657 GDSL-like Lipase/Acylhydrolase H9J98_24415 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) H9J98_24420 PF00194 Eukaryotic-type carbonic anhydrase H9J98_24425 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) H9J98_24440 PF13419 Haloacid dehalogenase-like hydrolase H9J98_24445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H9J98_24445 PF03466 LysR substrate binding domain H9J98_24480 PF12464 Maltose acetyltransferase H9J98_24480 PF14602 Hexapeptide repeat of succinyl-transferase H9J98_24485 PF02566 OsmC-like protein H9J98_24495 PF11799 impB/mucB/samB family C-terminal domain H9J98_24495 PF00817 impB/mucB/samB family H9J98_24495 PF13438 Domain of unknown function (DUF4113) H9J98_24500 PF00717 Peptidase S24-like H9J98_24510 PF01555 DNA methylase H9J98_24515 PF04851 Type III restriction enzyme, res subunit H9J98_24735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H9J98_24735 PF08447 PAS fold H9J98_24745 PF00239 Resolvase, N terminal domain H9J98_24745 PF02796 Helix-turn-helix domain of resolvase H9J98_24810 PF08401 Domain of unknown function (DUF1738) H9J98_24810 PF18818 Metallopeptidase superfamily domain H9J98_24810 PF13362 Toprim domain H9J98_24820 PF03230 Antirestriction protein H9J98_24845 PF01131 DNA topoisomerase H9J98_24845 PF01751 Toprim domain H9J98_24905 PF01464 Transglycosylase SLT domain H9J98_24920 PF01848 Hok/gef family H9J98_24960 PF00437 Type II/IV secretion system protein H9J98_24985 PF03743 Bacterial conjugation TrbI-like protein H9J98_24995 PF03524 Conjugal transfer protein H9J98_25000 PF04335 VirB8 protein H9J98_25010 PF00437 Type II/IV secretion system protein H9J98_25020 PF03135 CagE, TrbE, VirB family, component of type IV transporter system H9J98_25025 PF05101 Type IV secretory pathway, VirB3-like protein H9J98_25030 PF04956 TrbC/VIRB2 family H9J98_25105 PF11999 Protein of unknown function (DUF3494) H9J98_25105 PF02368 Bacterial Ig-like domain (group 2) H9J98_25110 PF00691 OmpA family H9J98_25110 PF01389 OmpA-like transmembrane domain H9J98_25115 PF02796 Helix-turn-helix domain of resolvase H9J98_25115 PF00239 Resolvase, N terminal domain