locus-tag	class	description
H9J98_00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
H9J98_00010	COG0592	DNA-directed DNA polymerase activity
H9J98_00015	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
H9J98_00020	COG0187	DNA topoisomerase II activity
H9J98_00030	COG0071	Belongs to the small heat shock protein (HSP20) family
H9J98_00035	COG3977	Valine--pyruvate aminotransferase
H9J98_00040	COG0366	Alpha amylase catalytic
H9J98_00045	COG0751	glycine-tRNA ligase activity
H9J98_00050	COG0752	glycyl-tRNA synthetase alpha subunit
H9J98_00055	COG2119	membrane
H9J98_00065	COG0425	Belongs to the sulfur carrier protein TusA family
H9J98_00080	COG0604	alcohol dehydrogenase
H9J98_00085	COG0183	Belongs to the thiolase family
H9J98_00090	COG1024	Enoyl-CoA hydratase
H9J98_00090	COG1250	3-hydroxyacyl-CoA dehydrogenase
H9J98_00095	COG1739	Uncharacterized protein family UPF0029
H9J98_00100	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
H9J98_00150	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
H9J98_00155	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
H9J98_00165	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
H9J98_00170	COG2104	thiamine diphosphate biosynthetic process
H9J98_00175	COG2022	thiamine diphosphate biosynthetic process
H9J98_00190	COG0006	proline dipeptidase activity
H9J98_00190	COG0006	proline dipeptidase activity
H9J98_00220	COG3220	belongs to the UPF0276 family
H9J98_00230	COG0210	DNA helicase
H9J98_00235	COG0405	Gamma-glutamyltransferase
H9J98_00240	COG1280	lysine exporter protein (LysE YggA)
H9J98_00250	COG2962	Rard protein
H9J98_00255	COG0514	ATP-dependent DNA helicase (RecQ)
H9J98_00265	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
H9J98_00270	COG0248	Ppx GppA phosphatase
H9J98_00275	COG0513	Belongs to the DEAD box helicase family
H9J98_00280	COG3118	belongs to the thioredoxin family
H9J98_00295	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
H9J98_00300	COG0633	Ferredoxin
H9J98_00340	COG3071	HemY protein
H9J98_00345	COG2959	enzyme of heme biosynthesis
H9J98_00350	COG1587	Uroporphyrinogen-III synthase
H9J98_00355	COG0181	hydroxymethylbilane synthase activity
H9J98_00360	COG3072	Adenylate cyclase
H9J98_00365	COG1965	Belongs to the frataxin family
H9J98_00375	COG0019	diaminopimelate decarboxylase activity
H9J98_00380	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
H9J98_00390	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
H9J98_00395	COG1011	Hydrolase
H9J98_00400	COG2199	diguanylate cyclase activity
H9J98_00400	COG2200	EAL domain
H9J98_00400	COG3287	FIST C domain
H9J98_00405	COG3148	PFAM DTW domain containing protein
H9J98_00420	COG0561	phosphatase activity
H9J98_00425	COG2267	carboxylic ester hydrolase activity
H9J98_00430	COG1280	lysine exporter protein (LysE YggA)
H9J98_00435	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
H9J98_00440	COG0640	Transcriptional regulator
H9J98_00445	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
H9J98_00495	COG2095	MarC family integral membrane protein
H9J98_00505	COG0742	ribosomal rna small subunit methyltransferase
H9J98_00510	COG0552	protein localization to endoplasmic reticulum
H9J98_00510	COG0552	protein localization to endoplasmic reticulum
H9J98_00515	COG2884	Cell division ATP-binding protein ftsE
H9J98_00520	COG2177	Part of the ABC transporter FtsEX involved in
H9J98_00530	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
H9J98_00535	COG0705	Rhomboid family
H9J98_00540	COG1580	Controls the rotational direction of flagella during chemotaxis
H9J98_00545	COG3161	chorismate lyase activity
H9J98_00550	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
H9J98_00555	COG2937	Belongs to the GPAT DAPAT family
H9J98_00560	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
H9J98_00565	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
H9J98_00570	COG0534	Mate efflux family protein
H9J98_00575	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
H9J98_00610	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
H9J98_00635	COG2003	Belongs to the UPF0758 family
H9J98_00650	COG3339	Conserved Protein
H9J98_00690	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
H9J98_00695	COG4206	TonB-dependent receptor
H9J98_00705	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
H9J98_00760	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
H9J98_00770	COG0812	UDP-N-acetylmuramate dehydrogenase activity
H9J98_00805	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
H9J98_00810	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
H9J98_00815	COG0250	Participates in transcription elongation, termination and antitermination
H9J98_00820	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
H9J98_00825	COG0081	regulation of translation
H9J98_00830	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
H9J98_00835	COG0222	ribosome binding
H9J98_00840	COG0085	RNA polymerase activity
H9J98_00845	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
H9J98_00850	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
H9J98_00855	COG2816	NAD+ diphosphatase activity
H9J98_00870	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
H9J98_00875	COG1573	uracil-dna glycosylase
H9J98_00880	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
H9J98_00890	COG1253	flavin adenine dinucleotide binding
H9J98_00905	COG0151	Belongs to the GarS family
H9J98_00910	COG0138	bifunctional purine biosynthesis protein purh
H9J98_00915	COG0789	Transcriptional regulator
H9J98_00920	COG3710	Transcriptional regulator
H9J98_00925	COG0531	amino acid
H9J98_00930	COG1982	Orn Lys Arg decarboxylase major
H9J98_00995	COG3706	GGDEF domain
H9J98_01000	COG0488	(ABC) transporter
H9J98_01005	COG2814	Major facilitator Superfamily
H9J98_01010	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
H9J98_01015	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
H9J98_01020	COG2264	protein methyltransferase activity
H9J98_01025	COG0439	Biotin carboxylase
H9J98_01030	COG0511	ligase activity, forming carbon-carbon bonds
H9J98_01035	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
H9J98_01040	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
H9J98_01055	COG2814	Major facilitator Superfamily
H9J98_01060	COG0784	Response regulator, receiver
H9J98_01060	COG2205	protein histidine kinase activity
H9J98_01060	COG2198	Histidine kinase
H9J98_01080	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
H9J98_01090	COG3263	regulation of cellular component size
H9J98_01100	COG4232	protein-disulfide reductase activity
H9J98_01105	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
H9J98_01110	COG1027	Aspartate ammonia-lyase
H9J98_01115	COG3030	protein affecting phage T7 exclusion by the F plasmid
H9J98_01120	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
H9J98_01130	COG2205	protein histidine kinase activity
H9J98_01135	COG0745	RESPONSE REGULATOR receiver
H9J98_01140	COG3678	ATP-independent chaperone mediated protein folding
H9J98_01150	COG0205	6-phosphofructokinase activity
H9J98_01155	COG0534	Mate efflux family protein
H9J98_01165	COG0459	protein refolding
H9J98_01180	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
H9J98_01185	COG1509	lysine 2,3-aminomutase activity
H9J98_01190	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
H9J98_01200	COG3080	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
H9J98_01205	COG3029	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
H9J98_01210	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
H9J98_01215	COG1053	succinate dehydrogenase
H9J98_01220	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
H9J98_01240	COG4942	peptidase
H9J98_01245	COG1045	serine acetyltransferase
H9J98_01250	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
H9J98_01255	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
H9J98_01260	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
H9J98_01265	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
H9J98_01280	COG0471	metal ion transport
H9J98_01285	COG0688	phosphatidylethanolamine metabolic process
H9J98_01290	COG1162	GTPase activity
H9J98_01295	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
H9J98_01365	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
H9J98_01370	COG0802	atpase or kinase
H9J98_01380	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
H9J98_01385	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
H9J98_01395	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
H9J98_01400	COG0330	HflC and HflK could
H9J98_01405	COG0330	HflC and HflK could
H9J98_01410	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
H9J98_01415	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
H9J98_01420	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
H9J98_01425	COG1017	nitric oxide dioxygenase activity
H9J98_01425	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
H9J98_01430	COG1959	2 iron, 2 sulfur cluster binding
H9J98_01435	COG0557	exoribonuclease II activity
H9J98_01440	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
H9J98_01445	COG0546	phosphoglycolate phosphatase activity
H9J98_01450	COG0180	Tryptophanyl-tRNA synthetase
H9J98_01465	COG0512	Glutamine amidotransferase of anthranilate synthase
H9J98_01470	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
H9J98_01480	COG1012	belongs to the aldehyde dehydrogenase family
H9J98_01490	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
H9J98_01495	COG3954	Phosphoribulokinase
H9J98_01500	COG3089	Belongs to the UPF0270 family
H9J98_01505	COG0429	hydrolase of the alpha beta-hydrolase fold
H9J98_01515	COG0488	(ABC) transporter
H9J98_01520	COG2249	NAD(P)H dehydrogenase (quinone) activity
H9J98_01535	COG1047	Peptidyl-prolyl cis-trans
H9J98_01540	COG1446	asparaginase
H9J98_01545	COG2900	Belongs to the SlyX family
H9J98_01555	COG0545	Peptidyl-prolyl cis-trans isomerase
H9J98_01560	COG2964	Protein conserved in bacteria
H9J98_01565	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
H9J98_01570	COG2923	Belongs to the DsrF TusC family
H9J98_01575	COG2168	tRNA wobble position uridine thiolation
H9J98_01585	COG0049	tRNA binding
H9J98_01590	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
H9J98_01595	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
H9J98_01600	COG2906	2 iron, 2 sulfur cluster binding
H9J98_01610	COG0281	malic enzyme
H9J98_01620	COG0626	cystathionine gamma-synthase activity
H9J98_01625	COG0527	aspartate kinase activity
H9J98_01625	COG0460	homoserine dehydrogenase
H9J98_01630	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
H9J98_01640	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
H9J98_01645	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
H9J98_01650	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
H9J98_01655	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
H9J98_01660	COG0137	argininosuccinate synthase activity
H9J98_01665	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
H9J98_01665	COG0165	Argininosuccinate lyase
H9J98_01675	COG0678	peroxiredoxin activity
H9J98_01675	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
H9J98_01685	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
H9J98_01715	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
H9J98_01720	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
H9J98_01730	COG0338	D12 class N6 adenine-specific DNA methyltransferase
H9J98_01735	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
H9J98_01740	COG0360	Binds together with S18 to 16S ribosomal RNA
H9J98_01745	COG2965	DNA replication, synthesis of RNA primer
H9J98_01755	COG0359	binds to the 23S rRNA
H9J98_01770	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
H9J98_01780	COG0432	Pfam Uncharacterised protein family UPF0047
H9J98_01785	COG0166	Belongs to the GPI family
H9J98_01795	COG0735	belongs to the Fur family
H9J98_01800	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
H9J98_01820	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
H9J98_01825	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
H9J98_01830	COG0175	sulfate reduction
H9J98_01905	COG1410	methionine synthase
H9J98_01905	COG0646	methionine synthase
H9J98_01910	COG0527	aspartate kinase activity
H9J98_01915	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
H9J98_01930	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
H9J98_01945	COG0629	single-stranded DNA binding
H9J98_01950	COG2200	EAL domain
H9J98_01950	COG2199	diguanylate cyclase activity
H9J98_01975	COG3409	Peptidoglycan-binding domain 1 protein
H9J98_01975	COG3267	Type II secretory pathway component ExeA
H9J98_01985	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
H9J98_01990	COG1459	type II secretion system
H9J98_02035	COG1077	Cell shape determining protein MreB Mrl
H9J98_02040	COG1792	Involved in formation and maintenance of cell shape
H9J98_02045	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
H9J98_02050	COG0424	maF-like protein
H9J98_02060	COG3164	Protein of unknown function
H9J98_02065	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
H9J98_02070	COG0312	modulator of DNA gyrase
H9J98_02075	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
H9J98_02080	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
H9J98_02090	COG0564	pseudouridine synthase activity
H9J98_02095	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
H9J98_02100	COG3028	Belongs to the UPF0307 family
H9J98_02105	COG0312	modulator of DNA gyrase
H9J98_02110	COG2239	Acts as a magnesium transporter
H9J98_02115	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
H9J98_02120	COG1660	Displays ATPase and GTPase activities
H9J98_02125	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
H9J98_02130	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
H9J98_02140	COG1137	ATPase activity
H9J98_02145	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
H9J98_02155	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
H9J98_02155	COG0517	IMP dehydrogenase activity
H9J98_02165	COG1127	ABC transporter
H9J98_02170	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
H9J98_02175	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
H9J98_02180	COG2854	intermembrane phospholipid transfer
H9J98_02190	COG5007	Belongs to the BolA IbaG family
H9J98_02195	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
H9J98_02200	COG0204	Acyl-transferase
H9J98_02205	COG0251	oxidation-reduction process
H9J98_02210	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
H9J98_02215	COG0540	Belongs to the ATCase OTCase family
H9J98_02225	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
H9J98_02230	COG2235	arginine
H9J98_02275	COG0525	valine-tRNA ligase activity
H9J98_02280	COG2927	DNA polymerase III (CHI subunit)
H9J98_02285	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
H9J98_02290	COG0795	lipopolysaccharide-transporting ATPase activity
H9J98_02295	COG0795	lipopolysaccharide-transporting ATPase activity
H9J98_02310	COG1028	Short-chain dehydrogenase reductase Sdr
H9J98_02410	COG1061	Type III restriction enzyme res subunit
H9J98_02440	COG0726	polysaccharide deacetylase
H9J98_02445	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
H9J98_02450	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
H9J98_02455	COG1447	Phosphotransferase system cellobiose-specific component IIA
H9J98_02460	COG1486	melibiose metabolic process
H9J98_02465	COG3394	polysaccharide catabolic process
H9J98_02475	COG3437	response regulator, receiver
H9J98_02520	COG1012	belongs to the aldehyde dehydrogenase family
H9J98_02550	COG0840	transmembrane signaling receptor activity
H9J98_02590	COG0741	lytic transglycosylase activity
H9J98_02595	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
H9J98_02605	COG0220	tRNA (guanine-N7-)-methyltransferase activity
H9J98_02615	COG2066	Belongs to the glutaminase family
H9J98_02620	COG0635	Involved in the biosynthesis of porphyrin-containing compound
H9J98_02625	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
H9J98_02635	COG1872	DUF167
H9J98_02640	COG0762	integral membrane protein
H9J98_02645	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
H9J98_02650	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
H9J98_02665	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
H9J98_02670	COG1678	Uncharacterized ACR, COG1678
H9J98_02675	COG0189	ligase activity
H9J98_02680	COG1385	rRNA (uridine-N3-)-methyltransferase activity
H9J98_02685	COG2356	endonuclease I
H9J98_02690	COG3091	SprT-like family
H9J98_02700	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
H9J98_02705	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
H9J98_02710	COG0583	DNA-binding transcription factor activity
H9J98_02715	COG4771	TonB-dependent receptor
H9J98_02720	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
H9J98_02725	COG0126	phosphoglycerate kinase activity
H9J98_02730	COG0191	fructose-bisphosphate aldolase activity
H9J98_02735	COG0668	transmembrane transport
H9J98_02745	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
H9J98_02755	COG0583	DNA-binding transcription factor activity
H9J98_02765	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
H9J98_02770	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
H9J98_02775	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
H9J98_02785	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
H9J98_02790	COG3079	Belongs to the UPF0149 family
H9J98_02795	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
H9J98_02800	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
H9J98_02815	COG0354	folic acid binding
H9J98_02820	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
H9J98_02825	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
H9J98_02830	COG1595	DNA-templated transcription, initiation
H9J98_02835	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
H9J98_02845	COG3086	response to oxidative stress
H9J98_02850	COG0481	GTPase activity
H9J98_02860	COG0571	ribonuclease III activity
H9J98_02865	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
H9J98_02870	COG1381	Involved in DNA repair and RecF pathway recombination
H9J98_02875	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
H9J98_02880	COG0736	holo-[acyl-carrier-protein] synthase activity
H9J98_02890	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
H9J98_02895	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
H9J98_02900	COG3956	TIGRFAM MazG family protein
H9J98_02905	COG0504	CTP synthase activity
H9J98_02910	COG0148	phosphopyruvate hydratase activity
H9J98_02915	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
H9J98_02920	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
H9J98_02925	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
H9J98_02930	COG0585	pseudouridine synthase activity
H9J98_02935	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
H9J98_02940	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
H9J98_02950	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
H9J98_02955	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
H9J98_02960	COG1546	Belongs to the CinA family
H9J98_02965	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
H9J98_02970	COG2137	regulation of response to DNA damage stimulus
H9J98_02975	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
H9J98_02980	COG0527	aspartate kinase activity
H9J98_03040	COG3630	sodium ion export across plasma membrane
H9J98_03045	COG0511	ligase activity, forming carbon-carbon bonds
H9J98_03045	COG5016	pyruvate
H9J98_03050	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
H9J98_03060	COG1238	metal cluster binding
H9J98_03065	COG0612	Peptidase, M16
H9J98_03070	COG2918	glutathione biosynthetic process
H9J98_03080	COG1854	S-ribosylhomocysteine lyase activity
H9J98_03085	COG4536	flavin adenine dinucleotide binding
H9J98_03090	COG4137	Cytochrome C assembly protein
H9J98_03095	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
H9J98_03100	COG0228	four-way junction DNA binding
H9J98_03105	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
H9J98_03110	COG0336	Belongs to the RNA methyltransferase TrmD family
H9J98_03115	COG0335	large ribosomal subunit rRNA binding
H9J98_03120	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
H9J98_03125	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
H9J98_03130	COG0237	dephospho-CoA kinase activity
H9J98_03140	COG1459	type II secretion system
H9J98_03145	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
H9J98_03155	COG0157	Belongs to the NadC ModD family
H9J98_03165	COG2186	Transcriptional regulator
H9J98_03170	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
H9J98_03175	COG0508	dehydrogenase complex catalyzes the overall conversion of
H9J98_03180	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
H9J98_03195	COG0288	reversible hydration of carbon dioxide
H9J98_03200	COG0659	secondary active sulfate transmembrane transporter activity
H9J98_03205	COG1131	(ABC) transporter
H9J98_03210	COG0842	Transport permease protein
H9J98_03215	COG1560	Kdo2-lipid A biosynthetic process
H9J98_03220	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
H9J98_03225	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
H9J98_03230	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
H9J98_03240	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
H9J98_03250	COG1489	DNA binding
H9J98_03255	COG1643	Atp-dependent helicase
H9J98_03305	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
H9J98_03310	COG1752	Esterase of the alpha-beta hydrolase superfamily
H9J98_03315	COG1049	propionate catabolic process, 2-methylcitrate cycle
H9J98_03320	COG3112	Uncharacterised protein family (UPF0231)
H9J98_03330	COG0004	ammonium transporteR
H9J98_03335	COG1840	ABC-type Fe3 transport system, periplasmic component
H9J98_03345	COG3842	ATPase activity
H9J98_03350	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
H9J98_03365	COG2971	BadF BadG BcrA BcrD
H9J98_03375	COG4608	Belongs to the ABC transporter superfamily
H9J98_03380	COG0444	Belongs to the ABC transporter superfamily
H9J98_03385	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
H9J98_03395	COG0747	negative chemotaxis
H9J98_03400	COG2205	protein histidine kinase activity
H9J98_03400	COG2198	Histidine kinase
H9J98_03400	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
H9J98_03400	COG0784	Response regulator, receiver
H9J98_03405	COG2813	Specifically methylates the guanine in position
H9J98_03410	COG0628	permease
H9J98_03420	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
H9J98_03425	COG0316	Belongs to the HesB IscA family
H9J98_03435	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
H9J98_03440	COG0739	heme binding
H9J98_03445	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
H9J98_03455	COG2027	D-alanyl-D-alanine carboxypeptidase
H9J98_03460	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
H9J98_03465	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
H9J98_03470	COG1534	Rna-binding protein
H9J98_03475	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
H9J98_03480	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
H9J98_03485	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
H9J98_03490	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
H9J98_03495	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
H9J98_03510	COG0779	Required for maturation of 30S ribosomal subunits
H9J98_03515	COG0195	Participates in both transcription termination and antitermination
H9J98_03520	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
H9J98_03525	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
H9J98_03530	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
H9J98_03535	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
H9J98_03540	COG1185	polyribonucleotide nucleotidyltransferase activity
H9J98_03555	COG0534	Mate efflux family protein
H9J98_03560	COG0826	peptidase U32
H9J98_03565	COG0826	peptidase U32
H9J98_03575	COG3154	lipid carrier protein
H9J98_03580	COG3153	acetyltransferase
H9J98_03600	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
H9J98_03610	COG0084	hydrolase, TatD family'
H9J98_03615	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
H9J98_03620	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
H9J98_03625	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
H9J98_03630	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
H9J98_03635	COG0813	purine-nucleoside phosphorylase activity
H9J98_03645	COG0560	Phosphoserine phosphatase
H9J98_03655	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
H9J98_03660	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
H9J98_03665	COG0583	DNA-binding transcription factor activity
H9J98_03675	COG1022	Amp-dependent synthetase and ligase
H9J98_03680	COG2169	Transcriptional regulator
H9J98_03705	COG4964	Belongs to the GSP D family
H9J98_03765	COG0583	DNA-binding transcription factor activity
H9J98_03770	COG0531	amino acid
H9J98_03775	COG2731	YhcH YjgK YiaL family protein
H9J98_03780	COG3250	beta-galactosidase activity
H9J98_03785	COG1609	Transcriptional regulator
H9J98_03790	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
H9J98_03800	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
H9J98_03805	COG2017	converts alpha-aldose to the beta-anomer
H9J98_03820	COG2211	Major facilitator Superfamily
H9J98_03825	COG1609	Transcriptional regulator
H9J98_03830	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
H9J98_03850	COG0598	Magnesium transport protein CorA
H9J98_03855	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
H9J98_03860	COG1349	DNA-binding transcription factor activity
H9J98_03865	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
H9J98_03870	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
H9J98_03875	COG2271	Major facilitator Superfamily
H9J98_03880	COG0584	glycerophosphoryl diester phosphodiesterase
H9J98_03885	COG2171	N-acyltransferase activity
H9J98_03890	COG3141	response to X-ray
H9J98_03910	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
H9J98_03915	COG1074	ATP-dependent DNA helicase activity
H9J98_03920	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
H9J98_03945	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
H9J98_03945	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
H9J98_03955	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
H9J98_03960	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
H9J98_03965	COG2166	iron-sulfur cluster assembly
H9J98_03975	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
H9J98_03980	COG0693	protein deglycase activity
H9J98_03985	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
H9J98_03990	COG3248	Nucleoside-binding outer membrane protein
H9J98_04005	COG1595	DNA-templated transcription, initiation
H9J98_04025	COG3056	Lipoprotein
H9J98_04030	COG2813	Specifically methylates the guanine in position
H9J98_04035	COG0271	Belongs to the BolA IbaG family
H9J98_04040	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
H9J98_04045	COG1805	sodium ion transport
H9J98_04050	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
H9J98_04055	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
H9J98_04060	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
H9J98_04065	COG2871	sodium ion transport
H9J98_04070	COG1477	protein flavinylation
H9J98_04085	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
H9J98_04090	COG0514	ATP-dependent DNA helicase (RecQ)
H9J98_04095	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
H9J98_04110	COG0733	neurotransmitter:sodium symporter activity
H9J98_04130	COG0442	prolyl-tRNA aminoacylation
H9J98_04135	COG1720	tRNA m6t6A37 methyltransferase activity
H9J98_04140	COG0254	rRNA binding
H9J98_04150	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
H9J98_04155	COG1671	Belongs to the UPF0178 family
H9J98_04180	COG3098	single-species biofilm formation
H9J98_04185	COG0564	pseudouridine synthase activity
H9J98_04195	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
H9J98_04200	COG0024	Methionine aminopeptidase
H9J98_04205	COG0052	Belongs to the universal ribosomal protein uS2 family
H9J98_04210	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
H9J98_04215	COG0528	UMP kinase activity
H9J98_04220	COG0233	cytoplasmic translational termination
H9J98_04225	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
H9J98_04230	COG0575	Belongs to the CDS family
H9J98_04235	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
H9J98_04240	COG0750	zinc metalloprotease
H9J98_04250	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
H9J98_04255	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
H9J98_04260	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
H9J98_04265	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
H9J98_04270	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
H9J98_04275	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
H9J98_04280	COG0587	DNA-directed DNA polymerase activity
H9J98_04285	COG0825	malonyl-CoA metabolic process
H9J98_04290	COG0037	tRNA processing
H9J98_04300	COG0347	Belongs to the P(II) protein family
H9J98_04305	COG3021	interspecies interaction between organisms
H9J98_04315	COG1388	LysM domain
H9J98_04315	COG0741	lytic transglycosylase activity
H9J98_04320	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
H9J98_04325	COG2226	methyltransferase
H9J98_04330	COG0328	RNA-DNA hybrid ribonuclease activity
H9J98_04335	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
H9J98_04350	COG1960	acyl-CoA dehydrogenase activity
H9J98_04355	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
H9J98_04360	COG0121	glutamine amidotransferase
H9J98_04365	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
H9J98_04370	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
H9J98_04375	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
H9J98_04380	COG2233	PERMEase
H9J98_04400	COG1393	Belongs to the ArsC family
H9J98_04405	COG4783	chaperone-mediated protein folding
H9J98_04420	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
H9J98_04425	COG2716	regulation of RNA biosynthetic process
H9J98_04430	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
H9J98_04435	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
H9J98_04450	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
H9J98_04455	COG1393	Belongs to the ArsC family
H9J98_04480	COG2837	iron assimilation
H9J98_04485	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
H9J98_04490	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
H9J98_04495	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
H9J98_04500	COG1334	flagellar protein FlaG
H9J98_04505	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
H9J98_04515	COG1516	flagellar protein fliS
H9J98_04535	COG1677	Flagellar hook-basal body complex protein FliE
H9J98_04545	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
H9J98_04595	COG1987	bacterial-type flagellum assembly
H9J98_04600	COG1684	flagellar biosynthetic protein fliR
H9J98_04620	COG0456	acetyltransferase
H9J98_04620	COG1214	PFAM Peptidase M22, glycoprotease
H9J98_04640	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
H9J98_04655	COG2826	transposase and inactivated derivatives, IS30 family
H9J98_04675	COG1278	Cold shock
H9J98_04715	COG0596	Alpha beta hydrolase
H9J98_04760	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
H9J98_04765	COG2198	Histidine kinase
H9J98_04765	COG0784	Response regulator, receiver
H9J98_04765	COG0643	Histidine kinase
H9J98_04770	COG2201	protein-glutamate methylesterase activity
H9J98_04775	COG1192	Involved in chromosome partitioning
H9J98_04785	COG0835	chemotaxis
H9J98_04795	COG4133	protoheme IX ABC transporter activity
H9J98_04800	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
H9J98_04805	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
H9J98_04810	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
H9J98_04815	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
H9J98_04820	COG1138	Cytochrome C-type biogenesis protein
H9J98_04825	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
H9J98_04840	COG2853	Lipoprotein
H9J98_04855	COG2067	long-chain fatty acid transport protein
H9J98_04870	COG0183	Belongs to the thiolase family
H9J98_04875	COG1024	Enoyl-CoA hydratase
H9J98_04875	COG1250	3-hydroxyacyl-CoA dehydrogenase
H9J98_04890	COG2062	phosphohistidine phosphatase, SixA
H9J98_04895	COG2840	Smr protein MutS2
H9J98_04900	COG2890	protein-(glutamine-N5) methyltransferase activity
H9J98_04905	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
H9J98_04910	COG2860	membrane
H9J98_04915	COG3101	peptidyl-lysine hydroxylation
H9J98_04925	COG0431	NADPH-dependent FMN reductase
H9J98_04930	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
H9J98_04930	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
H9J98_04935	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
H9J98_04940	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
H9J98_04945	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
H9J98_04955	COG0101	tRNA pseudouridine synthase activity
H9J98_04960	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
H9J98_04965	COG0285	dihydrofolate synthase activity
H9J98_04970	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
H9J98_04975	COG1286	toxin biosynthetic process
H9J98_04980	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
H9J98_04985	COG0583	DNA-binding transcription factor activity
H9J98_04990	COG0745	RESPONSE REGULATOR receiver
H9J98_04995	COG2832	Protein of unknown function (DUF454)
H9J98_05000	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
H9J98_05010	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
H9J98_05015	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
H9J98_05020	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
H9J98_05025	COG0814	amino acid
H9J98_05030	COG0251	oxidation-reduction process
H9J98_05035	COG3681	Belongs to the UPF0597 family
H9J98_05050	COG2261	transglycosylase associated protein
H9J98_05055	COG2983	Belongs to the UPF0260 family
H9J98_05060	COG0668	transmembrane transport
H9J98_05065	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
H9J98_05070	COG0346	lactoylglutathione lyase activity
H9J98_05080	COG1785	Belongs to the alkaline phosphatase family
H9J98_05095	COG2226	methyltransferase
H9J98_05105	COG0676	glucose-6-phosphate 1-epimerase activity
H9J98_05110	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
H9J98_05115	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
H9J98_05125	COG3139	Protein of unknown function (DUF1315)
H9J98_05130	COG0252	asparaginase activity
H9J98_05135	COG0616	signal peptide processing
H9J98_05140	COG0446	pyridine nucleotide-disulphide oxidoreductase
H9J98_05140	COG1902	pentaerythritol trinitrate reductase activity
H9J98_05145	COG0778	Nitroreductase
H9J98_05150	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
H9J98_05165	COG0123	including yeast histone deacetylase and acetoin utilization protein
H9J98_05175	COG3083	sulfuric ester hydrolase activity
H9J98_05180	COG3082	Protein of unknown function (DUF1414)
H9J98_05185	COG3081	Nucleoid-associated protein
H9J98_05200	COG1757	Na H antiporter
H9J98_05205	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
H9J98_05210	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
H9J98_05215	COG2095	MarC family integral membrane protein
H9J98_05220	COG1454	alcohol dehydrogenase
H9J98_05220	COG1012	belongs to the aldehyde dehydrogenase family
H9J98_05240	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
H9J98_05250	COG2056	Na+-H+ antiporter family
H9J98_05255	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
H9J98_05260	COG2885	chlorophyll binding
H9J98_05270	COG0346	lactoylglutathione lyase activity
H9J98_05275	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
H9J98_05280	COG4660	Part of a membrane complex involved in electron transport
H9J98_05285	COG4659	FMN binding
H9J98_05290	COG4658	electron transport chain
H9J98_05295	COG4656	Part of a membrane complex involved in electron transport
H9J98_05300	COG2878	Part of a membrane complex involved in electron transport
H9J98_05305	COG4657	Part of a membrane complex involved in electron transport
H9J98_05315	COG0556	nucleotide-excision repair
H9J98_05320	COG2204	response regulator
H9J98_05325	COG2198	Histidine kinase
H9J98_05330	COG0391	Required for morphogenesis under gluconeogenic growth conditions
H9J98_05335	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
H9J98_05340	COG0521	Mo-molybdopterin cofactor biosynthetic process
H9J98_05345	COG0315	cyclic pyranopterin monophosphate synthase activity
H9J98_05350	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
H9J98_05355	COG0314	molybdopterin synthase activity
H9J98_05365	COG0601	transmembrane transport
H9J98_05370	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
H9J98_05375	COG0444	Belongs to the ABC transporter superfamily
H9J98_05385	COG0435	Glutathione S-transferase
H9J98_05395	COG3174	membrane
H9J98_05400	COG0280	phosphate acetyltransferase
H9J98_05400	COG0857	belongs to the CobB CobQ family
H9J98_05405	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
H9J98_05410	COG3092	negative regulation of chromosome organization
H9J98_05420	COG4120	Belongs to the binding-protein-dependent transport system permease family
H9J98_05425	COG1122	ATPase activity
H9J98_05430	COG0366	Alpha amylase catalytic
H9J98_05440	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
H9J98_05445	COG3318	Belongs to the UPF0149 family
H9J98_05445	COG3012	SEC-C Motif Domain Protein
H9J98_05450	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
H9J98_05455	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
H9J98_05460	COG2186	Transcriptional regulator
H9J98_05470	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
H9J98_05470	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
H9J98_05475	COG0489	protein tyrosine kinase activity
H9J98_05480	COG0572	uridine kinase
H9J98_05490	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
H9J98_05495	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
H9J98_05500	COG0659	secondary active sulfate transmembrane transporter activity
H9J98_05505	COG1530	ribonuclease E activity
H9J98_05510	COG0564	pseudouridine synthase activity
H9J98_05515	COG0424	maF-like protein
H9J98_05520	COG1399	metal-binding, possibly nucleic acid-binding protein
H9J98_05530	COG0416	fatty acid biosynthetic process
H9J98_05535	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
H9J98_05565	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
H9J98_05570	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
H9J98_05580	COG0084	hydrolase, TatD family'
H9J98_05585	COG1263	PTS System
H9J98_05585	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
H9J98_05600	COG0733	neurotransmitter:sodium symporter activity
H9J98_05615	COG4667	esterase of the alpha-beta hydrolase superfamily
H9J98_05620	COG0469	pyruvate kinase activity
H9J98_05625	COG1940	carbohydrate kinase activity
H9J98_05630	COG0784	Response regulator, receiver
H9J98_05630	COG0835	chemotaxis
H9J98_05635	COG0587	DNA-directed DNA polymerase activity
H9J98_05650	COG1028	Short-chain dehydrogenase reductase Sdr
H9J98_05655	COG0616	signal peptide processing
H9J98_05660	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
H9J98_05665	COG0539	negative regulation of cytoplasmic translation
H9J98_05675	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
H9J98_05680	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
H9J98_05685	COG0284	orotidine-5'-phosphate decarboxylase activity
H9J98_05690	COG4166	transmembrane transport
H9J98_05705	COG0463	Glycosyl transferase, family 2
H9J98_05715	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
H9J98_05725	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
H9J98_05725	COG3008	intermembrane lipid transfer
H9J98_05730	COG2995	paraquat-inducible protein a
H9J98_05735	COG3258	Cytochrome c
H9J98_05740	COG2863	cytochrome
H9J98_05780	COG4232	protein-disulfide reductase activity
H9J98_05785	COG3118	belongs to the thioredoxin family
H9J98_05805	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
H9J98_05815	COG0577	efflux transmembrane transporter activity
H9J98_05815	COG1136	(ABC) transporter
H9J98_05820	COG0577	efflux transmembrane transporter activity
H9J98_05820	COG1136	(ABC) transporter
H9J98_05825	COG0577	efflux transmembrane transporter activity
H9J98_05825	COG1136	(ABC) transporter
H9J98_05830	COG1335	isochorismatase
H9J98_05880	COG3850	Histidine kinase
H9J98_05880	COG5002	protein histidine kinase activity
H9J98_05885	COG0745	RESPONSE REGULATOR receiver
H9J98_05890	COG0840	transmembrane signaling receptor activity
H9J98_05895	COG1032	radical SAM domain protein
H9J98_05900	COG5001	Diguanylate cyclase
H9J98_05900	COG2203	Gaf domain
H9J98_05900	COG3706	GGDEF domain
H9J98_05900	COG4251	negative regulation of phosphorylation
H9J98_05915	COG0583	DNA-binding transcription factor activity
H9J98_05920	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
H9J98_05930	COG2350	Protein conserved in bacteria
H9J98_05940	COG2917	probably involved in intracellular septation
H9J98_05960	COG1301	dicarboxylic acid transport
H9J98_05965	COG0318	PFAM AMP-dependent synthetase and ligase
H9J98_05970	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
H9J98_05975	COG0159	tryptophan synthase activity
H9J98_05980	COG0133	tryptophan synthase activity
H9J98_05985	COG0134	indole-3-glycerol-phosphate synthase activity
H9J98_05985	COG0135	phosphoribosylanthranilate isomerase activity
H9J98_05990	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
H9J98_05995	COG0512	Glutamine amidotransferase of anthranilate synthase
H9J98_06000	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
H9J98_06010	COG0613	PHP domain protein
H9J98_06015	COG0009	L-threonylcarbamoyladenylate synthase
H9J98_06025	COG1187	pseudouridine synthase activity
H9J98_06030	COG3099	Belongs to the UPF0263 family
H9J98_06035	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
H9J98_06045	COG0417	DNA replication proofreading
H9J98_06050	COG2197	response regulator
H9J98_06055	COG0322	excinuclease ABC activity
H9J98_06095	COG0019	diaminopimelate decarboxylase activity
H9J98_06120	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
H9J98_06125	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
H9J98_06130	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
H9J98_06150	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
H9J98_06160	COG0437	4 iron, 4 sulfur cluster binding
H9J98_06165	COG3301	Polysulphide reductase, NrfD
H9J98_06170	COG1138	Cytochrome C-type biogenesis protein
H9J98_06180	COG3088	subunit of a heme lyase
H9J98_06180	COG4235	cytochrome complex assembly
H9J98_06190	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
H9J98_06215	COG2989	Protein conserved in bacteria
H9J98_06220	COG3108	Peptidase M15
H9J98_06225	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
H9J98_06240	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
H9J98_06265	COG1846	Transcriptional regulator
H9J98_06270	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
H9J98_06275	COG0840	transmembrane signaling receptor activity
H9J98_06295	COG1448	Aminotransferase
H9J98_06310	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
H9J98_06320	COG0017	Asparaginyl-tRNA synthetase
H9J98_06325	COG0840	transmembrane signaling receptor activity
H9J98_06330	COG0720	synthase
H9J98_06340	COG2200	EAL domain
H9J98_06345	COG1760	l-serine dehydratase
H9J98_06350	COG0814	amino acid
H9J98_06355	COG0494	nUDIX hydrolase
H9J98_06365	COG0784	Response regulator, receiver
H9J98_06365	COG2205	protein histidine kinase activity
H9J98_06370	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
H9J98_06385	COG3106	COG3106 Predicted ATPase
H9J98_06390	COG3768	UPF0283 membrane protein
H9J98_06400	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
H9J98_06580	COG0456	acetyltransferase
H9J98_06655	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
H9J98_06680	COG1609	Transcriptional regulator
H9J98_06685	COG3250	beta-galactosidase activity
H9J98_06695	COG4580	involved in the transport of maltose and maltodextrins
H9J98_06705	COG2211	Major facilitator Superfamily
H9J98_06720	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
H9J98_06725	COG3547	Transposase (IS116 IS110 IS902 family)
H9J98_06740	COG1609	Transcriptional regulator
H9J98_06750	COG2182	Extracellular solute-binding protein
H9J98_06755	COG1175	transmembrane transport
H9J98_06760	COG3833	ABC-type maltose transport systems, permease component
H9J98_06770	COG1874	Beta-galactosidase
H9J98_06775	COG4580	involved in the transport of maltose and maltodextrins
H9J98_06780	COG0840	transmembrane signaling receptor activity
H9J98_06870	COG1280	lysine exporter protein (LysE YggA)
H9J98_07105	COG3153	acetyltransferase
H9J98_07140	COG4584	PFAM Integrase catalytic
H9J98_07145	COG1484	DNA-dependent DNA replication
H9J98_07305	COG0456	acetyltransferase
H9J98_07320	COG0582	viral genome integration into host DNA
H9J98_07345	COG3070	regulator of competence-specific genes
H9J98_07360	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
H9J98_07365	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
H9J98_07415	COG2826	transposase and inactivated derivatives, IS30 family
H9J98_07425	COG0729	surface antigen
H9J98_07430	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
H9J98_07435	COG2272	Belongs to the type-B carboxylesterase lipase family
H9J98_07460	COG2985	domain, Protein
H9J98_07470	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
H9J98_07485	COG0583	DNA-binding transcription factor activity
H9J98_07515	COG1757	Na H antiporter
H9J98_07520	COG0174	glutamine synthetase
H9J98_07525	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
H9J98_07530	COG1396	sequence-specific DNA binding
H9J98_07530	COG1917	Cupin 2, conserved barrel domain protein
H9J98_07535	COG1012	belongs to the aldehyde dehydrogenase family
H9J98_07540	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
H9J98_07550	COG2957	Belongs to the agmatine deiminase family
H9J98_07555	COG1012	belongs to the aldehyde dehydrogenase family
H9J98_07560	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
H9J98_07565	COG1227	inorganic diphosphatase activity
H9J98_07570	COG2771	luxR family
H9J98_07570	COG2200	EAL domain
H9J98_07595	COG1846	Transcriptional regulator
H9J98_07600	COG2315	Protein conserved in bacteria
H9J98_07620	COG0110	maltose O-acetyltransferase activity
H9J98_07650	COG3063	Type IV pilus biogenesis stability protein PilW
H9J98_07655	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
H9J98_07665	COG0531	amino acid
H9J98_07670	COG1560	Kdo2-lipid A biosynthetic process
H9J98_07675	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
H9J98_07680	COG1280	lysine exporter protein (LysE YggA)
H9J98_07690	COG1115	amino acid carrier protein
H9J98_07715	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
H9J98_07725	COG0814	amino acid
H9J98_07745	COG1132	(ABC) transporter
H9J98_07750	COG1132	(ABC) transporter
H9J98_07775	COG0443	Heat shock 70 kDa protein
H9J98_07780	COG0443	Heat shock 70 kDa protein
H9J98_07790	COG3706	GGDEF domain
H9J98_07820	COG0243	molybdopterin cofactor binding
H9J98_07825	COG0437	4 iron, 4 sulfur cluster binding
H9J98_07830	COG3302	dmso reductase anchor subunit
H9J98_07845	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
H9J98_07850	COG1643	Atp-dependent helicase
H9J98_07865	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
H9J98_07875	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
H9J98_07880	COG1215	transferase activity, transferring glycosyl groups
H9J98_07885	COG0438	transferase activity, transferring glycosyl groups
H9J98_07915	COG0438	transferase activity, transferring glycosyl groups
H9J98_07925	COG2204	response regulator
H9J98_07955	COG1793	dna ligase
H9J98_07965	COG0534	Mate efflux family protein
H9J98_07970	COG0307	riboflavin synthase, alpha
H9J98_07980	COG3001	Fructosamine kinase
H9J98_07985	COG2201	protein-glutamate methylesterase activity
H9J98_07990	COG3706	GGDEF domain
H9J98_08000	COG0791	NLP P60 protein
H9J98_08005	COG0840	transmembrane signaling receptor activity
H9J98_08040	COG3148	PFAM DTW domain containing protein
H9J98_08045	COG1940	carbohydrate kinase activity
H9J98_08060	COG0746	molybdenum cofactor guanylyltransferase activity
H9J98_08065	COG3842	ATPase activity
H9J98_08080	COG2204	response regulator
H9J98_08085	COG4191	Histidine kinase
H9J98_08090	COG0488	(ABC) transporter
H9J98_08095	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
H9J98_08115	COG3381	protein complex oligomerization
H9J98_08125	COG3383	formate dehydrogenase (NAD+) activity
H9J98_08125	COG0243	molybdopterin cofactor binding
H9J98_08130	COG0437	4 iron, 4 sulfur cluster binding
H9J98_08180	COG0004	ammonium transporteR
H9J98_08190	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
H9J98_08195	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
H9J98_08205	COG1177	transmembrane transport
H9J98_08215	COG3842	ATPase activity
H9J98_08235	COG0037	tRNA processing
H9J98_08240	COG0589	response to stress
H9J98_08245	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
H9J98_08260	COG2217	Heavy metal translocating P-type atpase
H9J98_08270	COG2010	Cytochrome c
H9J98_08285	COG3278	Belongs to the heme-copper respiratory oxidase family
H9J98_08300	COG0784	Response regulator, receiver
H9J98_08300	COG2205	protein histidine kinase activity
H9J98_08320	COG3120	sequence-specific DNA binding
H9J98_08325	COG1067	ATP-dependent peptidase activity
H9J98_08330	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
H9J98_08345	COG0488	(ABC) transporter
H9J98_08355	COG0116	Belongs to the methyltransferase superfamily
H9J98_08355	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
H9J98_08365	COG0167	dihydroorotate dehydrogenase activity
H9J98_08370	COG2902	Dehydrogenase
H9J98_08380	COG0308	aminopeptidase N
H9J98_08395	COG3109	RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities
H9J98_08400	COG1956	GAF domain-containing protein
H9J98_08405	COG1132	(ABC) transporter
H9J98_08410	COG2995	paraquat-inducible protein a
H9J98_08415	COG3008	intermembrane lipid transfer
H9J98_08420	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
H9J98_08420	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
H9J98_08440	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
H9J98_08445	COG1666	GTP binding
H9J98_08455	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
H9J98_08460	COG4597	amino acid ABC transporter
H9J98_08465	COG0765	amino acid transport
H9J98_08470	COG1126	abc transporter atp-binding protein
H9J98_08475	COG0670	Belongs to the BI1 family
H9J98_08485	COG2920	part of a sulfur-relay system
H9J98_08490	COG1254	Belongs to the acylphosphatase family
H9J98_08495	COG0840	transmembrane signaling receptor activity
H9J98_08500	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
H9J98_08540	COG3706	GGDEF domain
H9J98_08545	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
H9J98_08550	COG0602	queuosine metabolic process
H9J98_08555	COG0561	phosphatase activity
H9J98_08580	COG2828	Protein conserved in bacteria
H9J98_08590	COG0372	Belongs to the citrate synthase family
H9J98_08595	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
H9J98_08625	COG0730	response to heat
H9J98_08645	COG0457	Tetratricopeptide repeat
H9J98_08715	COG4790	Type iii secretion
H9J98_08720	COG4794	Type iii secretion
H9J98_08725	COG4791	protein targeting
H9J98_08730	COG4792	protein secretion
H9J98_08755	COG3177	Filamentation induced by cAMP protein fic
H9J98_08775	COG4669	(LipO)protein
H9J98_08845	COG1012	belongs to the aldehyde dehydrogenase family
H9J98_08850	COG3284	Transcriptional regulator
H9J98_08865	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
H9J98_08870	COG0363	glucosamine-6-phosphate deaminase activity
H9J98_08875	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
H9J98_08880	COG4565	transcriptional regulatory protein
H9J98_08885	COG3290	protein histidine kinase activity
H9J98_08900	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
H9J98_08925	COG0527	aspartate kinase activity
H9J98_08930	COG0662	Cupin 2, conserved barrel domain protein
H9J98_08935	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
H9J98_08940	COG0456	acetyltransferase
H9J98_08945	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
H9J98_08965	COG4176	ABC-type proline glycine betaine transport system permease component
H9J98_08970	COG2113	Glycine betaine
H9J98_08990	COG1028	Short-chain dehydrogenase reductase Sdr
H9J98_09000	COG0745	RESPONSE REGULATOR receiver
H9J98_09005	COG0642	Histidine kinase
H9J98_09010	COG1368	sulfuric ester hydrolase activity
H9J98_09020	COG0861	Integral membrane protein TerC family
H9J98_09030	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
H9J98_09035	COG1328	CTP reductase activity
H9J98_09040	COG1280	lysine exporter protein (LysE YggA)
H9J98_09050	COG5001	Diguanylate cyclase
H9J98_09050	COG3300	MHYT domain
H9J98_09060	COG4191	Histidine kinase
H9J98_09060	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
H9J98_09065	COG0471	metal ion transport
H9J98_09100	COG0557	exoribonuclease II activity
H9J98_09110	COG1278	Cold shock
H9J98_09125	COG2826	transposase and inactivated derivatives, IS30 family
H9J98_09160	COG0625	glutathione transferase activity
H9J98_09170	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
H9J98_09180	COG2195	Cleaves the N-terminal amino acid of tripeptides
H9J98_09190	COG0601	transmembrane transport
H9J98_09195	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
H9J98_09200	COG0444	Belongs to the ABC transporter superfamily
H9J98_09220	COG3291	Pkd domain containing protein
H9J98_09230	COG1177	transmembrane transport
H9J98_09235	COG1176	ABC-type spermidine putrescine transport system, permease component I
H9J98_09240	COG3842	ATPase activity
H9J98_09245	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
H9J98_09250	COG2423	ornithine cyclodeaminase activity
H9J98_09265	COG3938	Belongs to the proline racemase family
H9J98_09295	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
H9J98_09300	COG1451	nucleotide metabolic process
H9J98_09305	COG3475	LICD family
H9J98_09310	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
H9J98_09315	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
H9J98_09335	COG0583	DNA-binding transcription factor activity
H9J98_09355	COG4138	Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system
H9J98_09360	COG4139	cobalamin transport
H9J98_09365	COG2988	succinylglutamate desuccinylase activity
H9J98_09385	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
H9J98_09390	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
H9J98_09395	COG0702	epimerase
H9J98_09400	COG1823	symporter activity
H9J98_09405	COG2925	Exonuclease
H9J98_09410	COG1380	Effector of murein hydrolase LrgA
H9J98_09415	COG1346	cytolysis
H9J98_09420	COG0295	cytidine deaminase activity
H9J98_09425	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
H9J98_09430	COG0500	methyltransferase
H9J98_09440	COG0776	regulation of translation
H9J98_09450	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
H9J98_09450	COG0072	phenylalanine-tRNA ligase activity
H9J98_09455	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
H9J98_09460	COG3706	GGDEF domain
H9J98_09490	COG0393	Putative heavy-metal-binding
H9J98_09500	COG0291	Belongs to the bacterial ribosomal protein bL35 family
H9J98_09510	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
H9J98_09525	COG2188	Transcriptional regulator
H9J98_09530	COG1228	amidohydrolase
H9J98_09535	COG0010	Belongs to the arginase family
H9J98_09540	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
H9J98_09545	COG2986	histidine ammonia-lyase
H9J98_09560	COG0277	FAD linked oxidase domain protein
H9J98_09560	COG0247	lactate metabolic process
H9J98_09595	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
H9J98_09610	COG2829	1-acyl-2-lysophosphatidylserine acylhydrolase activity
H9J98_09615	COG1643	Atp-dependent helicase
H9J98_09620	COG0281	malic enzyme
H9J98_09625	COG2949	membrane
H9J98_09630	COG0471	metal ion transport
H9J98_09655	COG0492	ferredoxin-NADP+ reductase activity
H9J98_09660	COG4988	ABC transporter
H9J98_09665	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
H9J98_09670	COG3048	D-serine ammonia-lyase activity
H9J98_09675	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
H9J98_09685	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
H9J98_09685	COG4191	Histidine kinase
H9J98_09700	COG3070	regulator of competence-specific genes
H9J98_09710	COG2431	L-lysine efflux transmembrane transporter activity
H9J98_09720	COG0076	glutamate decarboxylase activity
H9J98_09725	COG1737	Transcriptional regulator
H9J98_09740	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
H9J98_09745	COG2985	domain, Protein
H9J98_09745	COG3273	potassium ion transport
H9J98_09750	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
H9J98_09765	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
H9J98_09780	COG4181	ATPase activity
H9J98_09785	COG0534	Mate efflux family protein
H9J98_09790	COG0702	epimerase
H9J98_09795	COG3005	denitrification pathway
H9J98_09825	COG2814	Major facilitator Superfamily
H9J98_09830	COG1187	pseudouridine synthase activity
H9J98_09835	COG1061	Type III restriction enzyme res subunit
H9J98_09855	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
H9J98_09870	COG0737	Belongs to the 5'-nucleotidase family
H9J98_09880	COG3313	Fe-S protein
H9J98_09905	COG0493	'glutamate synthase
H9J98_09915	COG0398	Pfam SNARE associated Golgi protein
H9J98_09920	COG4134	Bacterial extracellular solute-binding protein
H9J98_09925	COG4135	transport system, permease component
H9J98_09930	COG4136	ATPase activity
H9J98_09935	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
H9J98_09945	COG3604	Transcriptional regulator
H9J98_09950	COG1151	hydroxylamine reductase activity
H9J98_09955	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
H9J98_09965	COG0564	pseudouridine synthase activity
H9J98_09975	COG0733	neurotransmitter:sodium symporter activity
H9J98_09985	COG0626	cystathionine gamma-synthase activity
H9J98_09990	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
H9J98_09995	COG5380	lipid catabolic process
H9J98_10000	COG2818	Glycosylase
H9J98_10015	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
H9J98_10020	COG1983	PspC domain protein
H9J98_10030	COG1842	Phage shock protein A
H9J98_10035	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
H9J98_10050	COG4171	peptide transport system, permease
H9J98_10060	COG4172	Belongs to the ABC transporter superfamily
H9J98_10070	COG1227	inorganic diphosphatase activity
H9J98_10085	COG0243	molybdopterin cofactor binding
H9J98_10090	COG3005	denitrification pathway
H9J98_10095	COG4459	periplasmic nitrate reductase
H9J98_10100	COG0390	transport system, permease component
H9J98_10115	COG2116	formate transmembrane transporter activity
H9J98_10140	COG1434	Gram-negative-bacterium-type cell wall biogenesis
H9J98_10145	COG1435	thymidine kinase activity
H9J98_10150	COG0215	cysteine-tRNA ligase activity
H9J98_10155	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
H9J98_10160	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
H9J98_10165	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
H9J98_10170	COG3012	SEC-C Motif Domain Protein
H9J98_10175	COG0140	phosphoribosyl-ATP diphosphatase activity
H9J98_10175	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
H9J98_10180	COG0107	imidazoleglycerol-phosphate synthase activity
H9J98_10185	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
H9J98_10190	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
H9J98_10195	COG0131	Imidazoleglycerol-phosphate dehydratase
H9J98_10195	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
H9J98_10200	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
H9J98_10205	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
H9J98_10210	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
H9J98_10225	COG1757	Na H antiporter
H9J98_10240	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
H9J98_10250	COG0482	sulfurtransferase activity
H9J98_10255	COG2915	High frequency lysogenization protein hflD homolog
H9J98_10260	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
H9J98_10280	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
H9J98_10295	COG0300	oxidoreductase activity
H9J98_10305	COG0501	Belongs to the peptidase M48B family
H9J98_10315	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
H9J98_10325	COG0156	8-amino-7-oxononanoate synthase activity
H9J98_10330	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
H9J98_10335	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
H9J98_10340	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
H9J98_10355	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
H9J98_10360	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
H9J98_10365	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
H9J98_10370	COG1674	ftsk spoiiie
H9J98_10380	COG0686	Belongs to the AlaDH PNT family
H9J98_10390	COG0583	DNA-binding transcription factor activity
H9J98_10405	COG3568	Endonuclease Exonuclease Phosphatase
H9J98_10430	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
H9J98_10435	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
H9J98_10440	COG0840	transmembrane signaling receptor activity
H9J98_10460	COG0784	Response regulator, receiver
H9J98_10460	COG5002	protein histidine kinase activity
H9J98_10470	COG0754	glutathionylspermidine amidase activity
H9J98_10480	COG3766	membrane
H9J98_10490	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
H9J98_10495	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
H9J98_10500	COG2885	chlorophyll binding
H9J98_10505	COG0823	Involved in the tonB-independent uptake of proteins
H9J98_10520	COG0811	peptide transport
H9J98_10525	COG0824	Thioesterase
H9J98_10535	COG4890	Cyd operon protein YbgT
H9J98_10540	COG1294	oxidase, subunit
H9J98_10545	COG1271	oxidase subunit
H9J98_10550	COG2255	four-way junction helicase activity
H9J98_10555	COG0632	four-way junction helicase activity
H9J98_10560	COG0840	transmembrane signaling receptor activity
H9J98_10565	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
H9J98_10570	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
H9J98_10575	COG1801	Protein of unknown function DUF72
H9J98_10580	COG4106	trans-aconitate 2-methyltransferase activity
H9J98_10585	COG0500	methyltransferase
H9J98_10590	COG0189	ligase activity
H9J98_10590	COG4067	protein conserved in archaea
H9J98_10610	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
H9J98_10615	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
H9J98_10620	COG3006	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Not required for mini-F plasmid partitioning. Probably acts via its interaction with MukB and MukE. Overexpression results in anucleate cells. It has a calcium binding activity
H9J98_10625	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
H9J98_10630	COG1434	Gram-negative-bacterium-type cell wall biogenesis
H9J98_10635	COG0745	RESPONSE REGULATOR receiver
H9J98_10640	COG3381	protein complex oligomerization
H9J98_10645	COG1609	Transcriptional regulator
H9J98_10650	COG3070	regulator of competence-specific genes
H9J98_10670	COG0297	glycogen (starch) synthase activity
H9J98_10675	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
H9J98_10680	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
H9J98_10690	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
H9J98_10700	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
H9J98_10705	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
H9J98_10710	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
H9J98_10720	COG0542	response to heat
H9J98_10725	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
H9J98_10730	COG1278	Cold shock
H9J98_10740	COG1187	pseudouridine synthase activity
H9J98_10745	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
H9J98_10750	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
H9J98_10755	COG1199	ATP-dependent helicase activity
H9J98_10760	COG0730	response to heat
H9J98_10765	COG3923	Primosomal replication protein n
H9J98_10775	COG0708	Exodeoxyribonuclease III
H9J98_10815	COG1882	Formate acetyltransferase
H9J98_10825	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
H9J98_10835	COG3013	Belongs to the UPF0304 family
H9J98_10840	COG2766	serine protein kinase
H9J98_10845	COG2718	Belongs to the UPF0229 family
H9J98_10850	COG2719	SpoVR family
H9J98_10855	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
H9J98_10865	COG1663	tetraacyldisaccharide 4'-kinase activity
H9J98_10870	COG1132	(ABC) transporter
H9J98_10875	COG0658	competence protein
H9J98_10875	COG2333	competence protein COMEC
H9J98_10885	COG4591	ABC-type transport system involved in lipoprotein release permease component
H9J98_10890	COG1136	(ABC) transporter
H9J98_10895	COG4591	ABC-type transport system involved in lipoprotein release permease component
H9J98_10905	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
H9J98_10920	COG1252	NADH dehydrogenase
H9J98_10925	COG3150	esterase
H9J98_10950	COG0537	adenosine 5'-monophosphoramidase activity
H9J98_10975	COG0516	GMP reductase activity
H9J98_10975	COG0517	IMP dehydrogenase activity
H9J98_10980	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
H9J98_10985	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
H9J98_10990	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
H9J98_11000	COG2199	diguanylate cyclase activity
H9J98_11015	COG3126	Type III secretion system lipoprotein chaperone (YscW)
H9J98_11020	COG1946	Acyl-CoA thioesterase
H9J98_11030	COG1522	sequence-specific DNA binding
H9J98_11075	COG2801	Transposase and inactivated derivatives
H9J98_11080	COG0789	Transcriptional regulator
H9J98_11105	COG0640	Transcriptional regulator
H9J98_11155	COG0446	pyridine nucleotide-disulphide oxidoreductase
H9J98_11160	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
H9J98_11170	COG2894	cell division
H9J98_11175	COG0489	protein tyrosine kinase activity
H9J98_11195	COG0783	Belongs to the Dps family
H9J98_11210	COG0753	catalase activity
H9J98_11280	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
H9J98_11335	COG0477	Major facilitator Superfamily
H9J98_11340	COG2855	membrane
H9J98_11360	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
H9J98_11365	COG0596	Alpha beta hydrolase
H9J98_11370	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
H9J98_11375	COG1169	isochorismate synthase
H9J98_11380	COG0436	Aminotransferase
H9J98_11385	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
H9J98_11390	COG0232	Belongs to the dGTPase family. Type 2 subfamily
H9J98_11405	COG1555	photosystem II stabilization
H9J98_11410	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
H9J98_11415	COG0776	regulation of translation
H9J98_11420	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
H9J98_11425	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
H9J98_11435	COG0544	peptidyl-prolyl cis-trans isomerase activity
H9J98_11450	COG2204	response regulator
H9J98_11460	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
H9J98_11465	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
H9J98_11470	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
H9J98_11475	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
H9J98_11490	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
H9J98_11495	COG0569	domain protein
H9J98_11500	COG0513	Belongs to the DEAD box helicase family
H9J98_11505	COG1253	flavin adenine dinucleotide binding
H9J98_11540	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
H9J98_11545	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
H9J98_11560	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
H9J98_11565	COG1216	Glycosyl transferase, family 2
H9J98_11570	COG2986	histidine ammonia-lyase
H9J98_11595	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
H9J98_11605	COG1028	Short-chain dehydrogenase reductase Sdr
H9J98_11645	COG0732	type I restriction modification DNA specificity domain
H9J98_11650	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
H9J98_11655	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
H9J98_11660	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
H9J98_11680	COG4974	Belongs to the 'phage' integrase family
H9J98_11690	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
H9J98_11695	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
H9J98_11700	COG0583	DNA-binding transcription factor activity
H9J98_11705	COG2951	lytic endotransglycosylase activity
H9J98_11710	COG3100	YcgL domain-containing protein
H9J98_11715	COG0850	regulation of cytokinetic process
H9J98_11720	COG2894	cell division
H9J98_11725	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
H9J98_11730	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
H9J98_11735	COG0318	PFAM AMP-dependent synthetase and ligase
H9J98_11740	COG2267	carboxylic ester hydrolase activity
H9J98_11755	COG1214	PFAM Peptidase M22, glycoprotease
H9J98_11760	COG1199	ATP-dependent helicase activity
H9J98_11765	COG0788	formyltetrahydrofolate deformylase activity
H9J98_11775	COG0018	arginyl-trna synthetase
H9J98_11795	COG1918	ferrous iron import across plasma membrane
H9J98_11800	COG4977	sequence-specific DNA binding
H9J98_11805	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
H9J98_11810	COG1121	(ABC) transporter
H9J98_11815	COG1108	ABC-type Mn2 Zn2 transport systems permease components
H9J98_11825	COG0045	succinate-CoA ligase (ADP-forming) activity
H9J98_11830	COG0508	dehydrogenase complex catalyzes the overall conversion of
H9J98_11835	COG0567	Dehydrogenase, E1 component
H9J98_11840	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
H9J98_11845	COG1053	succinate dehydrogenase
H9J98_11850	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
H9J98_11865	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
H9J98_11875	COG0033	Phosphoglucomutase
H9J98_11880	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
H9J98_11885	COG0596	Alpha beta hydrolase
H9J98_11905	COG0735	belongs to the Fur family
H9J98_11910	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
H9J98_11915	COG1263	PTS System
H9J98_11915	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
H9J98_11920	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
H9J98_11925	COG1846	Transcriptional regulator
H9J98_11925	COG1940	carbohydrate kinase activity
H9J98_11930	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
H9J98_11930	COG4651	solute:proton antiporter activity
H9J98_11935	COG0367	asparagine synthase
H9J98_11940	COG0250	Participates in transcription elongation, termination and antitermination
H9J98_11945	COG3104	oligopeptide transport
H9J98_11950	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
H9J98_11955	COG0563	adenylate kinase activity
H9J98_11960	COG0326	Molecular chaperone. Has ATPase activity
H9J98_11965	COG3710	Transcriptional regulator
H9J98_11985	COG0622	Phosphoesterase
H9J98_12010	COG1090	epimerase
H9J98_12015	COG0300	oxidoreductase activity
H9J98_12020	COG3118	belongs to the thioredoxin family
H9J98_12025	COG3118	belongs to the thioredoxin family
H9J98_12025	COG0457	Tetratricopeptide repeat
H9J98_12030	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
H9J98_12035	COG1215	transferase activity, transferring glycosyl groups
H9J98_12040	COG1215	transferase activity, transferring glycosyl groups
H9J98_12065	COG2194	sulfuric ester hydrolase activity
H9J98_12070	COG0330	HflC and HflK could
H9J98_12090	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
H9J98_12095	COG3115	cell septum assembly
H9J98_12100	COG2981	High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway
H9J98_12105	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
H9J98_12110	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
H9J98_12115	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
H9J98_12120	COG2190	(PTS) system
H9J98_12125	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
H9J98_12130	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
H9J98_12135	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
H9J98_12140	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
H9J98_12150	COG1705	Flagellar rod assembly protein muramidase FlgJ
H9J98_12150	COG3951	Flagellar rod assembly protein muramidase FlgJ
H9J98_12155	COG1706	bacterial-type flagellum-dependent cell motility
H9J98_12160	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
H9J98_12170	COG4787	bacterial-type flagellum-dependent cell motility
H9J98_12175	COG1749	Flagellar hook protein flgE
H9J98_12185	COG1558	bacterial-type flagellum-dependent cell motility
H9J98_12190	COG1815	bacterial-type flagellum-dependent cell motility
H9J98_12195	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
H9J98_12200	COG0784	Response regulator, receiver
H9J98_12200	COG0835	chemotaxis
H9J98_12250	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
H9J98_12255	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
H9J98_12265	COG2217	Heavy metal translocating P-type atpase
H9J98_12265	COG2608	mercury ion transmembrane transporter activity
H9J98_12300	COG2840	Smr protein MutS2
H9J98_12305	COG1187	pseudouridine synthase activity
H9J98_12315	COG0737	Belongs to the 5'-nucleotidase family
H9J98_12320	COG2877	3-deoxy-8-phosphooctulonate synthase activity
H9J98_12325	COG2912	Transglutaminase-like superfamily
H9J98_12330	COG3094	Invasion gene expression up-regulator, SirB
H9J98_12335	COG2890	protein-(glutamine-N5) methyltransferase activity
H9J98_12340	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
H9J98_12345	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
H9J98_12350	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
H9J98_12355	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
H9J98_12360	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
H9J98_12365	COG0193	aminoacyl-tRNA hydrolase activity
H9J98_12370	COG0012	GTP binding
H9J98_12485	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
H9J98_12490	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
H9J98_12495	COG1702	phosphate starvation-inducible protein PhoH
H9J98_12500	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
H9J98_12505	COG4535	Mg2 and Co2 transporter CorC
H9J98_12510	COG0815	Transfers the fatty acyl group on membrane lipoproteins
H9J98_12515	COG2888	peptidyl-tyrosine sulfation
H9J98_12520	COG0495	leucyl-tRNA aminoacylation
H9J98_12525	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
H9J98_12530	COG1466	dna polymerase III delta subunit
H9J98_12535	COG0799	negative regulation of ribosome biogenesis
H9J98_12540	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
H9J98_12545	COG0768	penicillin binding
H9J98_12550	COG0772	Belongs to the SEDS family
H9J98_12555	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
H9J98_12560	COG1686	Belongs to the peptidase S11 family
H9J98_12565	COG2921	Belongs to the UPF0250 family
H9J98_12570	COG0321	lipoyl(octanoyl) transferase activity
H9J98_12575	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
H9J98_12580	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
H9J98_12585	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
H9J98_12595	COG0366	Alpha amylase catalytic
H9J98_12600	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
H9J98_12600	COG1263	PTS System
H9J98_12610	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
H9J98_12615	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
H9J98_12620	COG2011	ABC-type metal ion transport system permease component
H9J98_12625	COG1464	Belongs to the NlpA lipoprotein family
H9J98_12630	COG5595	Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310)
H9J98_12640	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
H9J98_12640	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
H9J98_12655	COG1611	Belongs to the LOG family
H9J98_12660	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
H9J98_12670	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
H9J98_12675	COG2363	Small membrane protein
H9J98_12685	COG0583	DNA-binding transcription factor activity
H9J98_12690	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
H9J98_12690	COG0301	tRNA thio-modification
H9J98_12695	COG2885	chlorophyll binding
H9J98_12700	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
H9J98_12705	COG1722	exodeoxyribonuclease VII activity
H9J98_12710	COG0142	geranyltranstransferase activity
H9J98_12715	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
H9J98_12720	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
H9J98_12725	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
H9J98_12730	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
H9J98_12750	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
H9J98_12750	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
H9J98_12755	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
H9J98_12760	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
H9J98_12765	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
H9J98_12775	COG1073	alpha beta
H9J98_12780	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
H9J98_12785	COG2252	PERMEase
H9J98_12790	COG2195	Cleaves the N-terminal amino acid of tripeptides
H9J98_12815	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
H9J98_12815	COG0047	phosphoribosylformylglycinamidine synthase activity
H9J98_12820	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
H9J98_12830	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
H9J98_12860	COG0484	heat shock protein binding
H9J98_12865	COG0443	Heat shock 70 kDa protein
H9J98_12880	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
H9J98_12885	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
H9J98_12895	COG0497	DNA recombination
H9J98_12900	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
H9J98_12905	COG2914	Belongs to the UPF0125 (RnfH) family
H9J98_12910	COG2867	negative regulation of translational initiation
H9J98_12915	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
H9J98_12925	COG0582	viral genome integration into host DNA
H9J98_13040	COG0583	DNA-binding transcription factor activity
H9J98_13045	COG3153	acetyltransferase
H9J98_13045	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
H9J98_13065	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
H9J98_13070	COG2873	o-acetylhomoserine
H9J98_13100	COG1115	amino acid carrier protein
H9J98_13110	COG1584	GPR1 FUN34 yaaH family protein
H9J98_13120	COG1757	Na H antiporter
H9J98_13125	COG0518	GMP synthase (glutamine-hydrolyzing) activity
H9J98_13125	COG0519	Catalyzes the synthesis of GMP from XMP
H9J98_13130	COG0516	GMP reductase activity
H9J98_13130	COG0517	IMP dehydrogenase activity
H9J98_13135	COG1570	exodeoxyribonuclease VII activity
H9J98_13150	COG1160	GTP binding
H9J98_13155	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
H9J98_13160	COG2976	Protein conserved in bacteria
H9J98_13165	COG0124	histidyl-tRNA synthetase
H9J98_13170	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
H9J98_13180	COG0820	rRNA (adenine-C2-)-methyltransferase activity
H9J98_13185	COG0105	UTP biosynthetic process
H9J98_13190	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
H9J98_13195	COG2975	iron-sulfur cluster assembly
H9J98_13200	COG0633	Ferredoxin
H9J98_13205	COG0443	Heat shock 70 kDa protein
H9J98_13210	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
H9J98_13220	COG0822	iron-sulfur transferase activity
H9J98_13225	COG1104	cysteine desulfurase activity
H9J98_13240	COG0483	inositol monophosphate 1-phosphatase activity
H9J98_13245	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
H9J98_13250	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
H9J98_13255	COG1862	Preprotein translocase
H9J98_13260	COG0343	queuine tRNA-ribosyltransferase activity
H9J98_13265	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
H9J98_13275	COG0517	IMP dehydrogenase activity
H9J98_13285	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
H9J98_13290	COG0583	DNA-binding transcription factor activity
H9J98_13295	COG0450	alkyl hydroperoxide reductase
H9J98_13300	COG3142	Participates in the control of copper homeostasis
H9J98_13310	COG0704	Plays a role in the regulation of phosphate uptake
H9J98_13315	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
H9J98_13320	COG0581	inorganic phosphate transmembrane transporter activity
H9J98_13330	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
H9J98_13335	COG0248	Ppx GppA phosphatase
H9J98_13345	COG5002	protein histidine kinase activity
H9J98_13350	COG0745	RESPONSE REGULATOR receiver
H9J98_13355	COG2974	May be involved in recombination
H9J98_13360	COG0826	peptidase U32
H9J98_13365	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
H9J98_13420	COG0542	response to heat
H9J98_13430	COG0564	pseudouridine synthase activity
H9J98_13435	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
H9J98_13440	COG0741	lytic transglycosylase activity
H9J98_13445	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
H9J98_13450	COG1605	Chorismate mutase
H9J98_13450	COG0077	Prephenate dehydratase
H9J98_13455	COG1986	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions
H9J98_13460	COG2973	This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region
H9J98_13470	COG0488	(ABC) transporter
H9J98_13480	COG0739	heme binding
H9J98_13485	COG0287	Prephenate dehydrogenase
H9J98_13485	COG1605	Chorismate mutase
H9J98_13490	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
H9J98_13495	COG1472	Belongs to the glycosyl hydrolase 3 family
H9J98_13500	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
H9J98_13505	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
H9J98_13520	COG1966	Carbon starvation protein
H9J98_13525	COG3275	phosphorelay sensor kinase activity
H9J98_13530	COG3279	Response regulator of the LytR AlgR family
H9J98_13535	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
H9J98_13540	COG1047	Peptidyl-prolyl cis-trans
H9J98_13545	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
H9J98_13550	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
H9J98_13555	COG0196	riboflavin kinase activity
H9J98_13560	COG0728	peptidoglycan biosynthetic process
H9J98_13565	COG0268	Binds directly to 16S ribosomal RNA
H9J98_13570	COG0640	Transcriptional regulator
H9J98_13575	COG0583	DNA-binding transcription factor activity
H9J98_13580	COG1283	sodium-dependent phosphate transmembrane transporter activity
H9J98_13590	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
H9J98_13595	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
H9J98_13600	COG0730	response to heat
H9J98_13610	COG0494	nUDIX hydrolase
H9J98_13615	COG3066	DNA modification
H9J98_13625	COG0667	Aldo Keto reductase
H9J98_13640	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
H9J98_13650	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
H9J98_13655	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
H9J98_13660	COG4974	Belongs to the 'phage' integrase family
H9J98_13665	COG0716	FMN binding
H9J98_13675	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
H9J98_13680	COG0513	Belongs to the DEAD box helicase family
H9J98_13685	COG3022	response to hydroperoxide
H9J98_13690	COG1115	amino acid carrier protein
H9J98_13705	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
H9J98_13710	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
H9J98_13715	COG3445	Acts as a radical domain for damaged PFL and possibly other radical proteins
H9J98_13720	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
H9J98_13725	COG0083	homoserine kinase activity
H9J98_13740	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
H9J98_13750	COG0745	RESPONSE REGULATOR receiver
H9J98_13760	COG0784	Response regulator, receiver
H9J98_13760	COG2198	Histidine kinase
H9J98_13760	COG5002	protein histidine kinase activity
H9J98_13765	COG5001	Diguanylate cyclase
H9J98_13765	COG4251	negative regulation of phosphorylation
H9J98_13765	COG2203	Gaf domain
H9J98_13765	COG3706	GGDEF domain
H9J98_13770	COG1242	4 iron, 4 sulfur cluster binding
H9J98_13775	COG0070	glutamate synthase
H9J98_13775	COG0067	glutamate synthase
H9J98_13775	COG0069	glutamate synthase activity
H9J98_13785	COG0067	glutamate synthase
H9J98_13785	COG0069	glutamate synthase activity
H9J98_13785	COG0070	glutamate synthase
H9J98_13790	COG0493	'glutamate synthase
H9J98_13800	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
H9J98_13810	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
H9J98_13815	COG2860	membrane
H9J98_13820	COG0583	DNA-binding transcription factor activity
H9J98_13825	COG0730	response to heat
H9J98_13840	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
H9J98_13845	COG0505	Belongs to the CarA family
H9J98_13850	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
H9J98_13855	COG0494	nUDIX hydrolase
H9J98_13860	COG0653	protein targeting
H9J98_13870	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
H9J98_13875	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
H9J98_13880	COG0849	cell division
H9J98_13885	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
H9J98_13890	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
H9J98_13895	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
H9J98_13900	COG0772	Belongs to the SEDS family
H9J98_13905	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
H9J98_13910	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
H9J98_13915	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
H9J98_13920	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
H9J98_13925	COG0768	penicillin binding
H9J98_13930	COG3116	cell division
H9J98_13935	COG0275	rRNA processing
H9J98_13945	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
H9J98_13955	COG0792	nuclease activity
H9J98_13960	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
H9J98_13965	COG2823	Periplasmic or secreted lipoprotein
H9J98_13970	COG2969	positive regulation of protein catabolic process
H9J98_13975	COG0625	glutathione transferase activity
H9J98_13980	COG2857	Cytochrome c1
H9J98_13985	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
H9J98_13990	COG0723	plastoquinol--plastocyanin reductase activity
H9J98_13995	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
H9J98_14000	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
H9J98_14005	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
H9J98_14010	COG3105	Protein conserved in bacteria
H9J98_14020	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
H9J98_14025	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
H9J98_14035	COG3150	esterase
H9J98_14045	COG3151	Protein conserved in bacteria
H9J98_14050	COG0494	nUDIX hydrolase
H9J98_14055	COG1538	Outer membrane efflux protein
H9J98_14060	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
H9J98_14060	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
H9J98_14065	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
H9J98_14080	COG3025	triphosphatase activity
H9J98_14085	COG1392	Phosphate transport regulator
H9J98_14090	COG0306	phosphate transporter
H9J98_14095	COG4991	sh3 domain protein
H9J98_14105	COG3409	Peptidoglycan-binding domain 1 protein
H9J98_14105	COG3267	Type II secretory pathway component ExeA
H9J98_14110	COG0617	tRNA 3'-terminal CCA addition
H9J98_14115	COG1968	undecaprenyl-diphosphatase activity
H9J98_14120	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
H9J98_14125	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
H9J98_14130	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
H9J98_14135	COG0596	Alpha beta hydrolase
H9J98_14140	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
H9J98_14145	COG0828	Belongs to the bacterial ribosomal protein bS21 family
H9J98_14150	COG1610	YqeY-like protein
H9J98_14155	COG0358	DNA primase activity
H9J98_14175	COG3550	peptidyl-serine autophosphorylation
H9J98_14230	COG0732	type I restriction modification DNA specificity domain
H9J98_14265	COG0840	transmembrane signaling receptor activity
H9J98_14295	COG1464	Belongs to the NlpA lipoprotein family
H9J98_14325	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
H9J98_14325	COG2213	PTS system mannitol-specific
H9J98_14330	COG0246	Mannitol dehydrogenase
H9J98_14335	COG3722	fumarate hydratase activity
H9J98_14350	COG1461	Dihydroxyacetone kinase
H9J98_14355	COG2376	Dihydroxyacetone kinase
H9J98_14365	COG5002	protein histidine kinase activity
H9J98_14435	COG2826	transposase and inactivated derivatives, IS30 family
H9J98_14475	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
H9J98_14480	COG1349	DNA-binding transcription factor activity
H9J98_14485	COG0469	pyruvate kinase activity
H9J98_14500	COG0440	acetolactate synthase activity
H9J98_14505	COG0028	Belongs to the TPP enzyme family
H9J98_14510	COG1022	Amp-dependent synthetase and ligase
H9J98_14515	COG0583	DNA-binding transcription factor activity
H9J98_14535	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
H9J98_14540	COG0473	3-isopropylmalate dehydrogenase activity
H9J98_14545	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
H9J98_14550	COG0066	3-isopropylmalate dehydratase activity
H9J98_14560	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
H9J98_14565	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
H9J98_14570	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
H9J98_14575	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
H9J98_14580	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
H9J98_14585	COG2967	ApaG domain
H9J98_14590	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
H9J98_14605	COG2966	Psort location CytoplasmicMembrane, score
H9J98_14610	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
H9J98_14620	COG0261	This protein binds to 23S rRNA in the presence of protein L20
H9J98_14625	COG0142	geranyltranstransferase activity
H9J98_14635	COG0039	L-malate dehydrogenase activity
H9J98_14645	COG2358	TRAP transporter, solute receptor (TAXI family
H9J98_14660	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
H9J98_14665	COG1178	ABC-type Fe3 transport system permease component
H9J98_14670	COG4143	(ABC) transporter
H9J98_14675	COG0163	prenyltransferase activity
H9J98_14680	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
H9J98_14685	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
H9J98_14690	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
H9J98_14700	COG2105	PFAM AIG2 family protein
H9J98_14705	COG2911	Protein conserved in bacteria
H9J98_14710	COG0729	surface antigen
H9J98_14715	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
H9J98_14725	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
H9J98_14740	COG4181	ATPase activity
H9J98_14760	COG0529	Catalyzes the synthesis of activated sulfate
H9J98_14765	COG0471	metal ion transport
H9J98_14765	COG3273	potassium ion transport
H9J98_14770	COG2895	sulfate adenylyltransferase (ATP) activity
H9J98_14775	COG0175	sulfate reduction
H9J98_14780	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
H9J98_14780	COG1648	precorrin-2 dehydrogenase activity
H9J98_14785	COG0737	Belongs to the 5'-nucleotidase family
H9J98_14795	COG0513	Belongs to the DEAD box helicase family
H9J98_14800	COG2153	protein acetylation
H9J98_14810	COG0545	Peptidyl-prolyl cis-trans isomerase
H9J98_14820	COG0203	ribosomal protein L17
H9J98_14825	COG0202	RNA polymerase activity
H9J98_14835	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
H9J98_14840	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
H9J98_14845	COG0257	Belongs to the bacterial ribosomal protein bL36 family
H9J98_14850	COG0201	protein transport
H9J98_14855	COG0200	Binds to the 23S rRNA
H9J98_14860	COG1841	ribosomal large subunit assembly
H9J98_14875	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
H9J98_14880	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
H9J98_14885	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
H9J98_14890	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
H9J98_14895	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
H9J98_14900	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
H9J98_14905	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
H9J98_14910	COG0255	Belongs to the universal ribosomal protein uL29 family
H9J98_14920	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
H9J98_14925	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
H9J98_14930	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
H9J98_14935	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
H9J98_14945	COG0088	Forms part of the polypeptide exit tunnel
H9J98_14950	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
H9J98_14960	COG0254	rRNA binding
H9J98_14965	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
H9J98_14970	COG1609	Transcriptional regulator
H9J98_14980	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
H9J98_14985	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
H9J98_14990	COG1575	Belongs to the MenA family. Type 1 subfamily
H9J98_14995	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
H9J98_15000	COG3074	FtsZ-dependent cytokinesis
H9J98_15005	COG1494	fructose-1,6-bisphosphatase
H9J98_15030	COG0149	triose-phosphate isomerase activity
H9J98_15055	COG4932	domain protein
H9J98_15055	COG5492	domain, Protein
H9J98_15095	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
H9J98_15110	COG0438	transferase activity, transferring glycosyl groups
H9J98_15115	COG1215	transferase activity, transferring glycosyl groups
H9J98_15165	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
H9J98_15175	COG1560	Kdo2-lipid A biosynthetic process
H9J98_15180	COG0859	PFAM glycosyl transferase family 9
H9J98_15185	COG1519	Transferase
H9J98_15195	COG1083	cytidylyl-transferase
H9J98_15200	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
H9J98_15210	COG2089	acid synthase
H9J98_15215	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
H9J98_15220	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
H9J98_15235	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
H9J98_15240	COG1021	2,3-dihydroxybenzoate-AMP ligase
H9J98_15265	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
H9J98_15285	COG3642	lipopolysaccharide core region biosynthetic process
H9J98_15290	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
H9J98_15295	COG0859	PFAM glycosyl transferase family 9
H9J98_15300	COG0463	Glycosyl transferase, family 2
H9J98_15325	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
H9J98_15340	COG0227	Belongs to the bacterial ribosomal protein bL28 family
H9J98_15345	COG2003	Belongs to the UPF0758 family
H9J98_15350	COG0840	transmembrane signaling receptor activity
H9J98_15355	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
H9J98_15360	COG1309	transcriptional regulator
H9J98_15365	COG1560	Kdo2-lipid A biosynthetic process
H9J98_15370	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
H9J98_15375	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
H9J98_15380	COG1561	YicC-like family, N-terminal region
H9J98_15390	COG4608	Belongs to the ABC transporter superfamily
H9J98_15395	COG0444	Belongs to the ABC transporter superfamily
H9J98_15400	COG0747	negative chemotaxis
H9J98_15405	COG4239	(ABC) transporter, permease
H9J98_15410	COG4174	ABC transporter (Permease)
H9J98_15430	COG0811	peptide transport
H9J98_15435	COG0848	biopolymer transport protein
H9J98_15450	COG0194	GDP metabolic process
H9J98_15455	COG1758	RNA polymerase activity
H9J98_15460	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
H9J98_15465	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
H9J98_15470	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
H9J98_15475	COG2233	PERMEase
H9J98_15495	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
H9J98_15505	COG2183	response to ionizing radiation
H9J98_15515	COG0596	Alpha beta hydrolase
H9J98_15520	COG1040	competence protein
H9J98_15525	COG0316	Belongs to the HesB IscA family
H9J98_15525	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
H9J98_15530	COG0494	nUDIX hydrolase
H9J98_15535	COG1218	3'(2'),5'-bisphosphate nucleotidase
H9J98_15545	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
H9J98_15550	COG3297	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
H9J98_15555	COG3156	type II secretion system protein K
H9J98_15560	COG4795	General secretion pathway protein
H9J98_15565	COG2165	general secretion pathway protein
H9J98_15570	COG2165	general secretion pathway protein
H9J98_15575	COG2165	general secretion pathway protein
H9J98_15580	COG1459	type II secretion system
H9J98_15585	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
H9J98_15595	COG3031	protein transport across the cell outer membrane
H9J98_15600	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
H9J98_15605	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
H9J98_15610	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
H9J98_15620	COG0456	acetyltransferase
H9J98_15625	COG1490	D-aminoacyl-tRNA deacylase activity
H9J98_15630	COG1295	ribonuclease BN
H9J98_15645	COG1217	gtp-binding protein TYPA
H9J98_15650	COG0174	glutamine synthetase
H9J98_15660	COG3852	Histidine kinase
H9J98_15665	COG2204	response regulator
H9J98_15675	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
H9J98_15705	COG0218	Necessary for normal cell division and for the maintenance of normal septation
H9J98_15710	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
H9J98_15710	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
H9J98_15730	COG0084	hydrolase, TatD family'
H9J98_15735	COG0805	protein transport
H9J98_15740	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
H9J98_15745	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
H9J98_15750	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
H9J98_15755	COG3165	ubiquinone biosynthetic process from chorismate
H9J98_15760	COG2226	methyltransferase
H9J98_15765	COG1322	Protein conserved in bacteria
H9J98_15780	COG0628	permease
H9J98_15830	COG2823	Periplasmic or secreted lipoprotein
H9J98_15845	COG2081	HI0933 family
H9J98_15855	COG1528	Iron-storage protein
H9J98_15860	COG0589	response to stress
H9J98_15875	COG0742	ribosomal rna small subunit methyltransferase
H9J98_15880	COG5001	Diguanylate cyclase
H9J98_15880	COG5002	protein histidine kinase activity
H9J98_15885	COG1522	sequence-specific DNA binding
H9J98_15890	COG0339	signal peptide processing
H9J98_15895	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
H9J98_15900	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
H9J98_15905	COG0583	DNA-binding transcription factor activity
H9J98_15910	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
H9J98_15915	COG0800	Aldolase
H9J98_15920	COG2610	gluconate transmembrane transporter activity
H9J98_15925	COG3265	gluconokinase activity
H9J98_15930	COG0129	dihydroxy-acid dehydratase activity
H9J98_15945	COG0583	DNA-binding transcription factor activity
H9J98_15950	COG1609	Transcriptional regulator
H9J98_15985	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
H9J98_15990	COG0601	transmembrane transport
H9J98_15995	COG0747	negative chemotaxis
H9J98_16000	COG4172	Belongs to the ABC transporter superfamily
H9J98_16050	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
H9J98_16055	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
H9J98_16060	COG2960	long-chain fatty acid transporting porin activity
H9J98_16065	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
H9J98_16070	COG0583	DNA-binding transcription factor activity
H9J98_16105	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
H9J98_16115	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
H9J98_16120	COG0408	coproporphyrinogen oxidase activity
H9J98_16125	COG0009	L-threonylcarbamoyladenylate synthase
H9J98_16130	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
H9J98_16135	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
H9J98_16140	COG0551	DNA topoisomerase type I activity
H9J98_16145	COG2922	Belongs to the Smg family
H9J98_16150	COG0758	DNA mediated transformation
H9J98_16160	COG0242	peptide deformylase activity
H9J98_16165	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
H9J98_16170	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
H9J98_16170	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
H9J98_16175	COG0569	domain protein
H9J98_16180	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
H9J98_16190	COG1272	protein, Hemolysin III
H9J98_16195	COG4326	sporulation control protein
H9J98_16200	COG3084	Protein conserved in bacteria
H9J98_16210	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
H9J98_16215	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
H9J98_16220	COG0204	Acyl-transferase
H9J98_16230	COG0606	chelatase, subunit chli
H9J98_16240	COG3978	acetolactate synthase activity
H9J98_16245	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
H9J98_16250	COG0129	dihydroxy-acid dehydratase activity
H9J98_16260	COG0583	DNA-binding transcription factor activity
H9J98_16265	COG2814	Major facilitator Superfamily
H9J98_16270	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
H9J98_16275	COG0765	amino acid transport
H9J98_16280	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
H9J98_16285	COG0355	proton-transporting ATP synthase activity, rotational mechanism
H9J98_16290	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
H9J98_16295	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
H9J98_16300	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
H9J98_16305	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
H9J98_16320	COG0356	it plays a direct role in the translocation of protons across the membrane
H9J98_16325	COG3312	ion transport
H9J98_16330	COG1475	DNA binding
H9J98_16335	COG1192	Involved in chromosome partitioning
H9J98_16340	COG0357	Ribosomal RNA small subunit methyltransferase G
H9J98_16345	COG0445	tRNA wobble uridine modification
H9J98_16350	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
H9J98_16355	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
H9J98_16360	COG0706	membrane insertase activity
H9J98_16370	COG0594	ribonuclease P activity
H9J98_16380	COG1126	abc transporter atp-binding protein
H9J98_16475	COG1765	OsmC-like protein
H9J98_16480	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
H9J98_16480	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
H9J98_16495	COG3046	protein related to deoxyribodipyrimidine photolyase
H9J98_16500	COG0415	Belongs to the DNA photolyase family
H9J98_16505	COG3706	GGDEF domain
H9J98_16520	COG0840	transmembrane signaling receptor activity
H9J98_16525	COG3706	GGDEF domain
H9J98_16540	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
H9J98_16555	COG3033	Beta-eliminating lyase
H9J98_16565	COG0579	oxidoreductase
H9J98_16585	COG2199	diguanylate cyclase activity
H9J98_16590	COG2204	response regulator
H9J98_16595	COG4191	Histidine kinase
H9J98_16630	COG0583	DNA-binding transcription factor activity
H9J98_16635	COG0189	ligase activity
H9J98_16640	COG4067	protein conserved in archaea
H9J98_16640	COG0189	ligase activity
H9J98_16650	COG1166	arginine decarboxylase activity
H9J98_16655	COG0010	Belongs to the arginase family
H9J98_16660	COG2814	Major facilitator Superfamily
H9J98_16665	COG1770	oligopeptidase
H9J98_16680	COG1108	ABC-type Mn2 Zn2 transport systems permease components
H9J98_16685	COG1121	(ABC) transporter
H9J98_16690	COG0803	Belongs to the bacterial solute-binding protein 9 family
H9J98_16730	COG0848	biopolymer transport protein
H9J98_16735	COG0811	peptide transport
H9J98_16740	COG0811	peptide transport
H9J98_16760	COG0745	RESPONSE REGULATOR receiver
H9J98_16765	COG0039	L-malate dehydrogenase activity
H9J98_16770	COG0584	glycerophosphoryl diester phosphodiesterase
H9J98_16780	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
H9J98_16835	COG1901	pseudouridine methyltransferase
H9J98_16840	COG0312	modulator of DNA gyrase
H9J98_16845	COG0312	modulator of DNA gyrase
H9J98_16850	COG0351	phosphomethylpyrimidine kinase
H9J98_16855	COG1116	anion transmembrane transporter activity
H9J98_16860	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
H9J98_16865	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
H9J98_16870	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
H9J98_16875	COG2145	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
H9J98_16880	COG0352	thiamine-phosphate diphosphorylase activity
H9J98_16890	COG0243	molybdopterin cofactor binding
H9J98_16895	COG3005	denitrification pathway
H9J98_16905	COG1028	Short-chain dehydrogenase reductase Sdr
H9J98_16920	COG0456	acetyltransferase
H9J98_16940	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
H9J98_16945	COG1929	Belongs to the glycerate kinase type-1 family
H9J98_16950	COG2610	gluconate transmembrane transporter activity
H9J98_16955	COG3835	regulator
H9J98_16995	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
H9J98_17000	COG3408	Glycogen debranching enzyme
H9J98_17000	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
H9J98_17030	COG3047	cAMP biosynthetic process
H9J98_17035	COG1357	PFAM Pentapeptide repeats (8 copies)
H9J98_17070	COG2375	cellular response to nickel ion
H9J98_17075	COG0583	DNA-binding transcription factor activity
H9J98_17080	COG2162	N-hydroxyarylamine O-acetyltransferase activity
H9J98_17085	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
H9J98_17100	COG2199	diguanylate cyclase activity
H9J98_17110	COG0561	phosphatase activity
H9J98_17115	COG0583	DNA-binding transcription factor activity
H9J98_17130	COG0564	pseudouridine synthase activity
H9J98_17135	COG0534	Mate efflux family protein
H9J98_17140	COG5001	Diguanylate cyclase
H9J98_17150	COG3123	guanosine phosphorylase activity
H9J98_17190	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
H9J98_17200	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
H9J98_17205	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
H9J98_17215	COG2259	Doxx family
H9J98_17220	COG1741	Belongs to the pirin family
H9J98_17240	COG0363	glucosamine-6-phosphate deaminase activity
H9J98_17250	COG0786	glutamate:sodium symporter activity
H9J98_17255	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
H9J98_17260	COG1131	(ABC) transporter
H9J98_17270	COG0786	glutamate:sodium symporter activity
H9J98_17295	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
H9J98_17305	COG3279	Response regulator of the LytR AlgR family
H9J98_17310	COG3275	phosphorelay sensor kinase activity
H9J98_17330	COG1136	(ABC) transporter
H9J98_17340	COG0772	Belongs to the SEDS family
H9J98_17345	COG0217	transcriptional regulatory protein
H9J98_17365	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
H9J98_17365	COG3236	hydrolase activity, hydrolyzing N-glycosyl compounds
H9J98_17375	COG0444	Belongs to the ABC transporter superfamily
H9J98_17380	COG4608	Belongs to the ABC transporter superfamily
H9J98_17405	COG1444	tRNA N-acetyltransferase activity
H9J98_17425	COG3340	Belongs to the peptidase S51 family
H9J98_17430	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
H9J98_17435	COG1263	PTS System
H9J98_17435	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
H9J98_17440	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
H9J98_17455	COG4166	transmembrane transport
H9J98_17505	COG0259	pyridoxamine-phosphate oxidase activity
H9J98_17530	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
H9J98_17575	COG1132	(ABC) transporter
H9J98_17605	COG0800	Aldolase
H9J98_17610	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
H9J98_17620	COG0246	Mannitol dehydrogenase
H9J98_17630	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
H9J98_17640	COG2186	Transcriptional regulator
H9J98_17650	COG0513	Belongs to the DEAD box helicase family
H9J98_17655	COG2258	MOSC domain
H9J98_17670	COG1486	melibiose metabolic process
H9J98_17675	COG0583	DNA-binding transcription factor activity
H9J98_17690	COG1595	DNA-templated transcription, initiation
H9J98_17715	COG3634	alkyl hydroperoxide reductase activity
H9J98_17725	COG1846	Transcriptional regulator
H9J98_17730	COG1764	response to oxidative stress
H9J98_17755	COG2160	L-arabinose isomerase activity
H9J98_17765	COG1069	ribulokinase activity
H9J98_17770	COG1879	ABC-type sugar transport system periplasmic component
H9J98_17775	COG1129	ABC transporter
H9J98_17780	COG1172	Belongs to the binding-protein-dependent transport system permease family
H9J98_17785	COG0826	peptidase U32
H9J98_17810	COG1653	transport
H9J98_17815	COG0019	diaminopimelate decarboxylase activity
H9J98_17820	COG4264	IucA IucC family
H9J98_17845	COG4772	TonB-dependent receptor
H9J98_17850	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
H9J98_17855	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
H9J98_17860	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
H9J98_17865	COG1120	ATPase activity
H9J98_17870	COG0840	transmembrane signaling receptor activity
H9J98_17875	COG0612	Peptidase, M16
H9J98_17885	COG0739	heme binding
H9J98_17910	COG4580	involved in the transport of maltose and maltodextrins
H9J98_17930	COG2356	endonuclease I
H9J98_17960	COG3423	Transcriptional regulator
H9J98_18065	COG5566	PFAM Mor transcription activator
H9J98_18095	COG0640	Transcriptional regulator
H9J98_18105	COG4373	Mu-like prophage FluMu protein gp28
H9J98_18110	COG4383	Mu-like prophage protein gp29
H9J98_18130	COG4388	Caudovirus prohead serine protease
H9J98_18140	COG4397	Mu-like prophage major head subunit gpT
H9J98_18150	COG4387	Mu-like prophage protein GP36
H9J98_18220	COG0531	amino acid
H9J98_18230	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
H9J98_18240	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
H9J98_18245	COG1162	GTPase activity
H9J98_18250	COG1263	PTS System
H9J98_18250	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
H9J98_18260	COG1999	signal sequence binding
H9J98_18275	COG2909	trisaccharide binding
H9J98_18280	COG0058	SHG alpha-glucan phosphorylase activity
H9J98_18285	COG1640	4-alpha-glucanotransferase
H9J98_18290	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
H9J98_18295	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
H9J98_18300	COG0366	Alpha amylase catalytic
H9J98_18315	COG3366	ferrous iron transmembrane transporter activity
H9J98_18320	COG0700	Nucleoside recognition
H9J98_18325	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
H9J98_18330	COG3339	Conserved Protein
H9J98_18335	COG1301	dicarboxylic acid transport
H9J98_18365	COG0583	DNA-binding transcription factor activity
H9J98_18390	COG2095	MarC family integral membrane protein
H9J98_18395	COG4667	esterase of the alpha-beta hydrolase superfamily
H9J98_18400	COG3397	chitin binding
H9J98_18410	COG1054	Belongs to the UPF0176 family
H9J98_18425	COG1686	Belongs to the peptidase S11 family
H9J98_18450	COG0583	DNA-binding transcription factor activity
H9J98_18455	COG4628	conserved protein (DUF2132)
H9J98_18465	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
H9J98_18475	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
H9J98_18480	COG0628	permease
H9J98_18520	COG2814	Major facilitator Superfamily
H9J98_18530	COG0454	-acetyltransferase
H9J98_18540	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
H9J98_18545	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
H9J98_18550	COG1882	Formate acetyltransferase
H9J98_18580	COG1360	Flagellar Motor Protein
H9J98_18585	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
H9J98_18590	COG1191	sigma factor activity
H9J98_18595	COG1580	Controls the rotational direction of flagella during chemotaxis
H9J98_18610	COG1516	flagellar protein fliS
H9J98_18615	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
H9J98_18635	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
H9J98_18650	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
H9J98_18660	COG1987	bacterial-type flagellum assembly
H9J98_18750	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
H9J98_18770	COG0346	lactoylglutathione lyase activity
H9J98_18795	COG0745	RESPONSE REGULATOR receiver
H9J98_18815	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
H9J98_18825	COG0156	8-amino-7-oxononanoate synthase activity
H9J98_18830	COG1063	alcohol dehydrogenase
H9J98_18865	COG0668	transmembrane transport
H9J98_18875	COG1304	FMN binding
H9J98_18880	COG1620	l-lactate permease
H9J98_18885	COG0583	DNA-binding transcription factor activity
H9J98_18890	COG1505	serine-type exopeptidase activity
H9J98_18895	COG4172	Belongs to the ABC transporter superfamily
H9J98_18905	COG1067	ATP-dependent peptidase activity
H9J98_18930	COG1247	-acetyltransferase
H9J98_18935	COG0437	4 iron, 4 sulfur cluster binding
H9J98_18940	COG0348	domain, Protein
H9J98_18955	COG1122	ATPase activity
H9J98_18960	COG4720	Psort location CytoplasmicMembrane, score
H9J98_18965	COG1566	PFAM secretion protein HlyD family protein
H9J98_18975	COG3706	GGDEF domain
H9J98_18990	COG0813	purine-nucleoside phosphorylase activity
H9J98_18995	COG3272	Protein of unknown function (DUF1722)
H9J98_19000	COG0789	Transcriptional regulator
H9J98_19005	COG0415	Belongs to the DNA photolyase family
H9J98_19010	COG1376	ErfK ybiS ycfS ynhG family protein
H9J98_19010	COG1388	LysM domain
H9J98_19020	COG0513	Belongs to the DEAD box helicase family
H9J98_19025	COG1770	oligopeptidase
H9J98_19030	COG4771	TonB-dependent receptor
H9J98_19060	COG0573	inorganic phosphate transmembrane transporter activity
H9J98_19065	COG0581	inorganic phosphate transmembrane transporter activity
H9J98_19070	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
H9J98_19085	COG2304	oxidoreductase activity
H9J98_19105	COG0714	Associated with various cellular activities
H9J98_19110	COG0840	transmembrane signaling receptor activity
H9J98_19170	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
H9J98_19175	COG1120	ATPase activity
H9J98_19180	COG4774	siderophore transport
H9J98_19185	COG1132	(ABC) transporter
H9J98_19190	COG2205	protein histidine kinase activity
H9J98_19190	COG2205	protein histidine kinase activity
H9J98_19200	COG0569	domain protein
H9J98_19205	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
H9J98_19215	COG3241	Transfers electrons from cytochrome c551 to cytochrome oxidase
H9J98_19220	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
H9J98_19235	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
H9J98_19235	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
H9J98_19235	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
H9J98_19240	COG2207	Transcriptional regulator
H9J98_19250	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
H9J98_19255	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
H9J98_19260	COG2084	Dehydrogenase
H9J98_19265	COG0753	catalase activity
H9J98_19275	COG2130	NADP-dependent
H9J98_19280	COG1309	transcriptional regulator
H9J98_19285	COG3097	Belongs to the UPF0267 family
H9J98_19345	COG3842	ATPase activity
H9J98_19355	COG1175	transmembrane transport
H9J98_19360	COG3833	ABC-type maltose transport systems, permease component
H9J98_19390	COG2354	Protein conserved in bacteria
H9J98_19395	COG0418	dihydroorotase activity
H9J98_19400	COG0401	homolog of Blt101
H9J98_19405	COG0633	Ferredoxin
H9J98_19405	COG3217	Mosc domain protein beta barrel domain protein
H9J98_19405	COG0633	Ferredoxin
H9J98_19405	COG3217	Mosc domain protein beta barrel domain protein
H9J98_19410	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
H9J98_19415	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
H9J98_19455	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
H9J98_19460	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
H9J98_19470	COG0848	biopolymer transport protein
H9J98_19475	COG0811	peptide transport
H9J98_19480	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
H9J98_19490	COG3721	Heme iron utilization protein
H9J98_19495	COG0748	coenzyme F420 binding
H9J98_19505	COG0835	chemotaxis
H9J98_19505	COG0784	Response regulator, receiver
H9J98_19510	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
H9J98_19545	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
H9J98_19550	COG0783	Belongs to the Dps family
H9J98_19555	COG0583	DNA-binding transcription factor activity
H9J98_19570	COG4934	collagen metabolic process
H9J98_19580	COG0366	Alpha amylase catalytic
H9J98_19600	COG2249	NAD(P)H dehydrogenase (quinone) activity
H9J98_19605	COG0589	response to stress
H9J98_19610	COG0488	(ABC) transporter
H9J98_19615	COG1505	serine-type exopeptidase activity
H9J98_19630	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
H9J98_19640	COG2067	long-chain fatty acid transport protein
H9J98_19650	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
H9J98_19680	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
H9J98_19700	COG3383	formate dehydrogenase (NAD+) activity
H9J98_19715	COG0842	Transport permease protein
H9J98_19720	COG1131	(ABC) transporter
H9J98_19730	COG0840	transmembrane signaling receptor activity
H9J98_19735	COG2706	6-phosphogluconolactonase activity
H9J98_19745	COG1881	PFAM PEBP family protein
H9J98_19755	COG0798	PFAM Bile acid sodium symporter
H9J98_19770	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
H9J98_19775	COG2213	PTS system mannitol-specific
H9J98_19780	COG1063	alcohol dehydrogenase
H9J98_19790	COG1072	(Pantothenic acid kinase))
H9J98_19795	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
H9J98_19815	COG0814	amino acid
H9J98_19825	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
H9J98_19855	COG3314	Sporulation integral membrane protein YlbJ
H9J98_19875	COG0739	heme binding
H9J98_19895	COG0583	DNA-binding transcription factor activity
H9J98_19900	COG2814	Major facilitator Superfamily
H9J98_19915	COG0697	spore germination
H9J98_19920	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
H9J98_19945	COG2207	Transcriptional regulator
H9J98_19950	COG1280	lysine exporter protein (LysE YggA)
H9J98_19965	COG1045	serine acetyltransferase
H9J98_19970	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
H9J98_19975	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
H9J98_19985	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
H9J98_20010	COG1612	heme a metabolic process
H9J98_20015	COG0109	protoheme IX farnesyltransferase activity
H9J98_20020	COG0545	Peptidyl-prolyl cis-trans isomerase
H9J98_20050	COG1278	Cold shock
H9J98_20055	COG3036	rescue of stalled ribosome
H9J98_20065	COG2199	diguanylate cyclase activity
H9J98_20085	COG0577	efflux transmembrane transporter activity
H9J98_20085	COG1136	(ABC) transporter
H9J98_20095	COG0840	transmembrane signaling receptor activity
H9J98_20100	COG0783	Belongs to the Dps family
H9J98_20110	COG2133	pyrroloquinoline quinone binding
H9J98_20115	COG1454	alcohol dehydrogenase
H9J98_20120	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
H9J98_20150	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
H9J98_20155	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
H9J98_20160	COG3186	Phenylalanine-4-hydroxylase
H9J98_20165	COG2154	pterin-4-alpha-carbinolamine dehydratase
H9J98_20185	COG3530	Putative quorum-sensing-regulated virulence factor
H9J98_20190	COG0513	Belongs to the DEAD box helicase family
H9J98_20195	COG4628	conserved protein (DUF2132)
H9J98_20200	COG0133	tryptophan synthase activity
H9J98_20210	COG2039	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
H9J98_20220	COG0523	cobalamin synthesis protein
H9J98_20225	COG0513	Belongs to the DEAD box helicase family
H9J98_20245	COG2200	EAL domain
H9J98_20250	COG1119	ATPase activity
H9J98_20255	COG0840	transmembrane signaling receptor activity
H9J98_20275	COG0641	radical SAM
H9J98_20300	COG0582	viral genome integration into host DNA
H9J98_20350	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
H9J98_20365	COG4776	Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction
H9J98_20370	COG0513	Belongs to the DEAD box helicase family
H9J98_20375	COG5001	Diguanylate cyclase
H9J98_20380	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
H9J98_20395	COG5413	integral membrane protein
H9J98_20405	COG1024	Enoyl-CoA hydratase
H9J98_20410	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
H9J98_20415	COG1960	acyl-CoA dehydrogenase activity
H9J98_20425	COG0183	Belongs to the thiolase family
H9J98_20440	COG1024	Enoyl-CoA hydratase
H9J98_20445	COG1024	Enoyl-CoA hydratase
H9J98_20455	COG1028	Short-chain dehydrogenase reductase Sdr
H9J98_20460	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
H9J98_20465	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
H9J98_20470	COG1845	cytochrome c oxidase, subunit III
H9J98_20475	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
H9J98_20480	COG0109	protoheme IX farnesyltransferase activity
H9J98_20495	COG1902	pentaerythritol trinitrate reductase activity
H9J98_20505	COG1126	abc transporter atp-binding protein
H9J98_20510	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
H9J98_20515	COG4215	(ABC) transporter
H9J98_20520	COG4160	amino acid transport
H9J98_20535	COG0625	glutathione transferase activity
H9J98_20570	COG0443	Heat shock 70 kDa protein
H9J98_20575	COG2847	Copper chaperone PCu(A)C
H9J98_20600	COG0745	RESPONSE REGULATOR receiver
H9J98_20615	COG1785	Belongs to the alkaline phosphatase family
H9J98_20640	COG0814	amino acid
H9J98_20650	COG0243	molybdopterin cofactor binding
H9J98_20655	COG1648	precorrin-2 dehydrogenase activity
H9J98_20655	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
H9J98_20670	COG3707	response regulator
H9J98_20675	COG1116	anion transmembrane transporter activity
H9J98_20675	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
H9J98_20680	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
H9J98_20685	COG1116	anion transmembrane transporter activity
H9J98_20690	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
H9J98_20690	COG2146	nitrite reductase [NAD(P)H] activity
H9J98_20740	COG2815	serine threonine protein kinase
H9J98_20740	COG0515	serine threonine protein kinase
H9J98_20775	COG0631	protein serine/threonine phosphatase activity
H9J98_20845	COG0420	3'-5' exonuclease activity
H9J98_20850	COG0419	ATPase involved in DNA repair
H9J98_20870	COG3040	lipid binding
H9J98_20880	COG2814	Major facilitator Superfamily
H9J98_20890	COG1288	antiporter activity
H9J98_20900	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
H9J98_20915	COG2425	protein containing a von Willebrand factor type A (vWA) domain
H9J98_20930	COG0583	DNA-binding transcription factor activity
H9J98_20935	COG0277	FAD linked oxidase domain protein
H9J98_20950	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
H9J98_20995	COG0840	transmembrane signaling receptor activity
H9J98_21035	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
H9J98_21035	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
H9J98_21070	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
H9J98_21075	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
H9J98_21085	COG2116	formate transmembrane transporter activity
H9J98_21105	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
H9J98_21135	COG0534	Mate efflux family protein
H9J98_21150	COG3118	belongs to the thioredoxin family
H9J98_21155	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
H9J98_21180	COG2271	Major facilitator Superfamily
H9J98_21185	COG3851	Histidine kinase
H9J98_21190	COG2197	response regulator
H9J98_21200	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
H9J98_21205	COG0583	DNA-binding transcription factor activity
H9J98_21210	COG0243	molybdopterin cofactor binding
H9J98_21240	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
H9J98_21255	COG1328	CTP reductase activity
H9J98_21260	COG0602	queuosine metabolic process
H9J98_21265	COG0534	Mate efflux family protein
H9J98_21280	COG4067	protein conserved in archaea
H9J98_21280	COG0189	ligase activity
H9J98_21290	COG3111	PFAM Bacterial OB fold (BOF) protein
H9J98_21295	COG1492	cobalamin metabolic process
H9J98_21300	COG0725	ABC transporter, periplasmic molybdate-binding protein
H9J98_21305	COG4149	molybdate abc transporter
H9J98_21310	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
H9J98_21320	COG5001	Diguanylate cyclase
H9J98_21320	COG4251	negative regulation of phosphorylation
H9J98_21320	COG3706	GGDEF domain
H9J98_21320	COG2203	Gaf domain
H9J98_21345	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
H9J98_21350	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
H9J98_21380	COG3140	Belongs to the UPF0181 family
H9J98_21385	COG0589	response to stress
H9J98_21400	COG0023	Translation Initiation Factor
H9J98_21410	COG1181	Belongs to the D-alanine--D-alanine ligase family
H9J98_21420	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
H9J98_21420	COG0045	succinate-CoA ligase (ADP-forming) activity
H9J98_21420	COG1042	CoA-binding domain protein
H9J98_21425	COG0583	DNA-binding transcription factor activity
H9J98_21430	COG4771	TonB-dependent receptor
H9J98_21430	COG1629	transport
H9J98_21435	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
H9J98_21440	COG5002	protein histidine kinase activity
H9J98_21440	COG5001	Diguanylate cyclase
H9J98_21440	COG3447	MASE1 domain protein
H9J98_21445	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
H9J98_21450	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
H9J98_21455	COG1984	allophanate hydrolase subunit 2
H9J98_21465	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
H9J98_21470	COG4181	ATPase activity
H9J98_21480	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
H9J98_21485	COG3300	MHYT domain
H9J98_21485	COG5001	Diguanylate cyclase
H9J98_21495	COG0484	heat shock protein binding
H9J98_21520	COG4533	DNA binding
H9J98_21530	COG2050	protein possibly involved in aromatic compounds catabolism
H9J98_21545	COG2067	long-chain fatty acid transport protein
H9J98_21550	COG2267	carboxylic ester hydrolase activity
H9J98_21570	COG0861	Integral membrane protein TerC family
H9J98_21575	COG0737	Belongs to the 5'-nucleotidase family
H9J98_21580	COG3593	DNA synthesis involved in DNA repair
H9J98_21590	COG0583	DNA-binding transcription factor activity
H9J98_21595	COG2116	formate transmembrane transporter activity
H9J98_21600	COG2353	YceI-like domain
H9J98_21605	COG3038	cytochrome b561
H9J98_21620	COG4943	cyclic-guanylate-specific phosphodiesterase activity
H9J98_21625	COG0513	Belongs to the DEAD box helicase family
H9J98_21630	COG3124	Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP
H9J98_21635	COG0840	transmembrane signaling receptor activity
H9J98_21640	COG0546	phosphoglycolate phosphatase activity
H9J98_21645	COG3437	response regulator, receiver
H9J98_21645	COG0784	Response regulator, receiver
H9J98_21730	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
H9J98_21850	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
H9J98_21855	COG2759	Belongs to the formate--tetrahydrofolate ligase family
H9J98_21860	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
H9J98_21870	COG2207	Transcriptional regulator
H9J98_21875	COG1979	alcohol dehydrogenase
H9J98_21900	COG2271	Major facilitator Superfamily
H9J98_21905	COG0469	pyruvate kinase activity
H9J98_21910	COG1126	abc transporter atp-binding protein
H9J98_21915	COG0765	amino acid transport
H9J98_21920	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
H9J98_21925	COG0765	amino acid transport
H9J98_21930	COG2200	EAL domain
H9J98_21930	COG2199	diguanylate cyclase activity
H9J98_21930	COG2203	Gaf domain
H9J98_21945	COG1609	Transcriptional regulator
H9J98_21950	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
H9J98_21950	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
H9J98_21955	COG1105	Belongs to the carbohydrate kinase PfkB family
H9J98_21960	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
H9J98_21960	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
H9J98_21960	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
H9J98_22000	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
H9J98_22005	COG0509	glycine decarboxylation via glycine cleavage system
H9J98_22010	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
H9J98_22010	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
H9J98_22015	COG2204	response regulator
H9J98_22035	COG1278	Cold shock
H9J98_22065	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
H9J98_22070	COG0583	DNA-binding transcription factor activity
H9J98_22075	COG2176	DNA-directed DNA polymerase activity
H9J98_22115	COG0242	peptide deformylase activity
H9J98_22135	COG2239	Acts as a magnesium transporter
H9J98_22155	COG0346	lactoylglutathione lyase activity
H9J98_22160	COG1902	pentaerythritol trinitrate reductase activity
H9J98_22180	COG5642	Protein of unknown function (DUF2384)
H9J98_22185	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
H9J98_22200	COG4565	transcriptional regulatory protein
H9J98_22205	COG3290	protein histidine kinase activity
H9J98_22210	COG0471	metal ion transport
H9J98_22240	COG2076	Multidrug Resistance protein
H9J98_22255	COG0671	phosphoesterase, PA-phosphatase related
H9J98_22265	COG2962	Rard protein
H9J98_22280	COG0835	chemotaxis
H9J98_22280	COG0784	Response regulator, receiver
H9J98_22300	COG2197	response regulator
H9J98_22310	COG3706	GGDEF domain
H9J98_22315	COG2197	response regulator
H9J98_22320	COG3300	MHYT domain
H9J98_22320	COG5001	Diguanylate cyclase
H9J98_22355	COG3069	C4-dicarboxylate transmembrane transporter activity
H9J98_22360	COG1704	LemA family
H9J98_22365	COG0501	Belongs to the peptidase M48B family
H9J98_22390	COG0641	radical SAM
H9J98_22405	COG3111	PFAM Bacterial OB fold (BOF) protein
H9J98_22410	COG1597	lipid kinase activity
H9J98_22415	COG0583	DNA-binding transcription factor activity
H9J98_22450	COG0714	Associated with various cellular activities
H9J98_22455	COG0641	radical SAM
H9J98_22460	COG3119	arylsulfatase activity
H9J98_22475	COG3119	arylsulfatase activity
H9J98_22480	COG3119	arylsulfatase activity
H9J98_22485	COG0745	RESPONSE REGULATOR receiver
H9J98_22500	COG0784	Response regulator, receiver
H9J98_22500	COG2198	Histidine kinase
H9J98_22500	COG2205	protein histidine kinase activity
H9J98_22505	COG1879	ABC-type sugar transport system periplasmic component
H9J98_22510	COG1803	Methylglyoxal synthase
H9J98_22515	COG0210	DNA helicase
H9J98_22520	COG1289	transmembrane transporter activity
H9J98_22550	COG4771	TonB-dependent receptor
H9J98_22550	COG1629	transport
H9J98_22560	COG0789	Transcriptional regulator
H9J98_22565	COG4604	ABC transporter, ATP-binding protein
H9J98_22570	COG4605	iron ion homeostasis
H9J98_22575	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
H9J98_22580	COG4607	ABC-type enterochelin transport system periplasmic component
H9J98_22590	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
H9J98_22605	COG1609	Transcriptional regulator
H9J98_22610	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
H9J98_22615	COG1879	ABC-type sugar transport system periplasmic component
H9J98_22620	COG1172	Belongs to the binding-protein-dependent transport system permease family
H9J98_22625	COG1129	ABC transporter
H9J98_22630	COG1869	D-ribose catabolic process
H9J98_22635	COG5001	Diguanylate cyclase
H9J98_22640	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
H9J98_22695	COG0784	Response regulator, receiver
H9J98_22695	COG2205	protein histidine kinase activity
H9J98_22705	COG5001	Diguanylate cyclase
H9J98_22705	COG3300	MHYT domain
H9J98_22715	COG0330	HflC and HflK could
H9J98_22730	COG0517	IMP dehydrogenase activity
H9J98_22730	COG4175	Glycine betaine
H9J98_22760	COG1012	belongs to the aldehyde dehydrogenase family
H9J98_22765	COG1309	transcriptional regulator
H9J98_22770	COG3706	GGDEF domain
H9J98_22775	COG1028	Short-chain dehydrogenase reductase Sdr
H9J98_22790	COG1024	Enoyl-CoA hydratase
H9J98_22795	COG1960	acyl-CoA dehydrogenase activity
H9J98_22805	COG0183	Belongs to the thiolase family
H9J98_22815	COG1960	acyl-CoA dehydrogenase activity
H9J98_22820	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
H9J98_22825	COG1024	Enoyl-CoA hydratase
H9J98_22830	COG4770	biotin carboxylase activity
H9J98_22840	COG4999	Histidine kinase
H9J98_22840	COG3850	Histidine kinase
H9J98_22840	COG3437	response regulator, receiver
H9J98_22840	COG2205	protein histidine kinase activity
H9J98_22855	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
H9J98_22855	COG3264	Mechanosensitive ion channel
H9J98_22860	COG0110	maltose O-acetyltransferase activity
H9J98_22865	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
H9J98_22870	COG1271	oxidase subunit
H9J98_22875	COG1294	oxidase, subunit
H9J98_22885	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
H9J98_22890	COG0789	Transcriptional regulator
H9J98_22960	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
H9J98_22965	COG0516	GMP reductase activity
H9J98_22970	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
H9J98_22970	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
H9J98_22985	COG4989	oxidoreductase activity
H9J98_23000	COG0038	chloride channel
H9J98_23010	COG1914	H( )-stimulated, divalent metal cation uptake system
H9J98_23015	COG0302	gtp cyclohydrolase
H9J98_23025	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
H9J98_23040	COG2897	thiosulfate sulfurtransferase activity
H9J98_23060	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
H9J98_23065	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
H9J98_23070	COG0840	transmembrane signaling receptor activity
H9J98_23075	COG2814	Major facilitator Superfamily
H9J98_23080	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
H9J98_23090	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
H9J98_23100	COG0840	transmembrane signaling receptor activity
H9J98_23120	COG2195	Cleaves the N-terminal amino acid of tripeptides
H9J98_23135	COG2197	response regulator
H9J98_23140	COG3850	Histidine kinase
H9J98_23145	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
H9J98_23155	COG0243	molybdopterin cofactor binding
H9J98_23165	COG3005	denitrification pathway
H9J98_23185	COG0183	Belongs to the thiolase family
H9J98_23200	COG1280	lysine exporter protein (LysE YggA)
H9J98_23210	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
H9J98_23215	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
H9J98_23240	COG1522	sequence-specific DNA binding
H9J98_23260	COG1566	PFAM secretion protein HlyD family protein
H9J98_23270	COG0784	Response regulator, receiver
H9J98_23270	COG2205	protein histidine kinase activity
H9J98_23275	COG1879	ABC-type sugar transport system periplasmic component
H9J98_23280	COG2827	Endonuclease containing a URI domain
H9J98_23285	COG3132	Protein of unknown function, DUF480
H9J98_23295	COG2926	Belongs to the UPF0265 family
H9J98_23300	COG0534	Mate efflux family protein
H9J98_23305	COG0673	inositol 2-dehydrogenase activity
H9J98_23310	COG2205	protein histidine kinase activity
H9J98_23310	COG0784	Response regulator, receiver
H9J98_23310	COG5002	protein histidine kinase activity
H9J98_23330	COG0583	DNA-binding transcription factor activity
H9J98_23335	COG1522	sequence-specific DNA binding
H9J98_23340	COG0531	amino acid
H9J98_23355	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
H9J98_23360	COG2239	Acts as a magnesium transporter
H9J98_23365	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
H9J98_23370	COG0402	S-adenosylhomocysteine deaminase activity
H9J98_23380	COG1418	mRNA catabolic process
H9J98_23390	COG2814	Major facilitator Superfamily
H9J98_23400	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
H9J98_23420	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
H9J98_23435	COG4221	oxidoreductase activity
H9J98_23440	COG0745	RESPONSE REGULATOR receiver
H9J98_23445	COG2205	protein histidine kinase activity
H9J98_23455	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
H9J98_23460	COG2194	sulfuric ester hydrolase activity
H9J98_23465	COG0673	inositol 2-dehydrogenase activity
H9J98_23500	COG4667	esterase of the alpha-beta hydrolase superfamily
H9J98_23505	COG1741	Belongs to the pirin family
H9J98_23510	COG1278	Cold shock
H9J98_23520	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
H9J98_23535	COG1686	Belongs to the peptidase S11 family
H9J98_23540	COG0625	glutathione transferase activity
H9J98_23545	COG1621	beta-fructofuranosidase activity
H9J98_23550	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
H9J98_23555	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
H9J98_23555	COG1263	PTS System
H9J98_23575	COG1028	Short-chain dehydrogenase reductase Sdr
H9J98_23590	COG3746	phosphate-selective porin O and P
H9J98_23610	COG2207	Transcriptional regulator
H9J98_23610	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
H9J98_23615	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
H9J98_23635	COG0513	Belongs to the DEAD box helicase family
H9J98_23645	COG0583	DNA-binding transcription factor activity
H9J98_23660	COG1902	pentaerythritol trinitrate reductase activity
H9J98_23665	COG1063	alcohol dehydrogenase
H9J98_23675	COG1028	Short-chain dehydrogenase reductase Sdr
H9J98_23685	COG3122	Protein conserved in bacteria
H9J98_23700	COG0583	DNA-binding transcription factor activity
H9J98_23705	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
H9J98_23715	COG0252	asparaginase activity
H9J98_23720	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
H9J98_23725	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
H9J98_23725	COG0574	Belongs to the PEP-utilizing enzyme family
H9J98_23740	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
H9J98_23760	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
H9J98_23780	COG3706	GGDEF domain
H9J98_23800	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
H9J98_23830	COG3842	ATPase activity
H9J98_23875	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
H9J98_23910	COG0583	DNA-binding transcription factor activity
H9J98_23920	COG4948	Mandelate Racemase Muconate Lactonizing
H9J98_23950	COG1342	Belongs to the UPF0251 family
H9J98_23955	COG3015	lipoprotein NlpE involved in copper resistance
H9J98_23960	COG3713	MltA-interacting MipA family protein
H9J98_23975	COG0583	DNA-binding transcription factor activity
H9J98_24000	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
H9J98_24010	COG1335	isochorismatase
H9J98_24020	COG0753	catalase activity
H9J98_24030	COG1349	DNA-binding transcription factor activity
H9J98_24035	COG0346	lactoylglutathione lyase activity
H9J98_24055	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
H9J98_24060	COG3537	Alpha-1,2-mannosidase
H9J98_24065	COG3537	Alpha-1,2-mannosidase
H9J98_24075	COG3537	Alpha-1,2-mannosidase
H9J98_24080	COG3537	Alpha-1,2-mannosidase
H9J98_24085	COG2070	2-Nitropropane dioxygenase
H9J98_24090	COG0737	Belongs to the 5'-nucleotidase family
H9J98_24100	COG1309	transcriptional regulator
H9J98_24120	COG1280	lysine exporter protein (LysE YggA)
H9J98_24135	COG0459	protein refolding
H9J98_24140	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
H9J98_24145	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
H9J98_24160	COG1304	FMN binding
H9J98_24180	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
H9J98_24195	COG1706	bacterial-type flagellum-dependent cell motility
H9J98_24200	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
H9J98_24205	COG4786	Flagellar basal body rod
H9J98_24210	COG4787	bacterial-type flagellum-dependent cell motility
H9J98_24215	COG1749	Flagellar hook protein flgE
H9J98_24220	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
H9J98_24225	COG1558	bacterial-type flagellum-dependent cell motility
H9J98_24230	COG1815	bacterial-type flagellum-dependent cell motility
H9J98_24250	COG0741	lytic transglycosylase activity
H9J98_24255	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
H9J98_24275	COG1760	l-serine dehydratase
H9J98_24280	COG3104	oligopeptide transport
H9J98_24300	COG0583	DNA-binding transcription factor activity
H9J98_24310	COG2866	Carboxypeptidase
H9J98_24315	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
H9J98_24325	COG2990	Protein conserved in bacteria
H9J98_24350	COG3842	ATPase activity
H9J98_24360	COG1840	ABC-type Fe3 transport system, periplasmic component
H9J98_24365	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
H9J98_24370	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
H9J98_24375	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
H9J98_24380	COG1609	Transcriptional regulator
H9J98_24410	COG3240	lipase activity
H9J98_24415	COG2067	long-chain fatty acid transport protein
H9J98_24425	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
H9J98_24440	COG1011	Hydrolase
H9J98_24480	COG0110	maltose O-acetyltransferase activity
H9J98_24485	COG1765	OsmC-like protein
H9J98_24500	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
H9J98_24510	COG2189	Belongs to the N(4) N(6)-methyltransferase family
H9J98_24515	COG3421	Type III restriction
H9J98_24735	COG0840	transmembrane signaling receptor activity
H9J98_24845	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
H9J98_24960	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
H9J98_24985	COG2948	multi-organism process
H9J98_24995	COG3504	Conjugal transfer protein
H9J98_25000	COG3701	Conjugal transfer protein
H9J98_25010	COG4962	Type ii secretion system protein e
H9J98_25020	COG3451	type IV secretory pathway VirB4
H9J98_25025	COG5268	conjugation
H9J98_25105	COG4932	domain protein
H9J98_25105	COG5492	domain, Protein