SIPHO040v1_p0003    3076 ..    3094 + -10.3  -3.14564   AATCACAACCTATAA             GCGGCTA ATTCC TAGCCGC             TTAATCCGCAACTAA  75 55
SIPHO040v1_p0004    3783 ..    3803 + -14.1  -2.53581   AAACCACACAAACAA            GCGGATAGA TAA TCTATCCGC            TAAGTTAACCCTATA  93 53
SIPHO040v1_p0005 NONE
SIPHO040v1_p0006    4508 ..    4522 +  -8.5  -3.71873   ATGCCATACGGTATC               GGGGC TACAC GCCCC               TTTCCATGTAACTAC  73 181
SIPHO040v1_p0008 NONE
SIPHO040v1_p0009 NONE
SIPHO040v1_p0010    8593 ..    8607 +  -8.6  -2.83449   GGGTAGATAAAATCT               CCACTT TAC AAGTGG               TAATTCTACGGATAT  66 59
SIPHO040v1_p0011 NONE
SIPHO040v1_p0012 NONE
SIPHO040v1_p0013 NONE
SIPHO040v1_p0014 NONE
SIPHO040v1_p0015   12615 ..   12637 + -13.5  -4.67635   AGAACACACTTCTAA           GGGTAGAGC TTTTT GCTCTACCC           TTTTGTCGTTTTAGG 100 42
SIPHO040v1_p0016 NONE
SIPHO040v1_p0017 NONE
SIPHO040v1_p0018 NONE
SIPHO040v1_p0019   14799 ..   14820 +  -4.4  -2.50074   AATGTAGATGACGAA           CCTCTGGT TGTTAC ACCAGACG            CTATCTTATGGCAAG  47 122
SIPHO040v1_p0020 NONE
SIPHO040v1_p0021 NONE
SIPHO040v1_p0022 NONE
SIPHO040v1_p0023   17355 ..   17365 +  -5.4  -4.11773   AAATTTCTCCAATAT                 TAGC CCC GCTA                 TTTTGGGGCATATTT  65 42
SIPHO040v1_p0024   18140 ..   18159 + -10.7  -5.37043   GTCAAATAAACATGA            GGCAGCC ATTTTG GGCTGCC             TTTTTTGTATCCGCT 100 32
SIPHO040v1_p0025   21359 ..   21376 +  -9.1  -5.56673   CCCATAACCCTAAAA             CCCGACT CTTT GGTCGGG              TTTTTTATTGTCCGT 100 34
SIPHO040v1_p0026 NONE
SIPHO040v1_p0027 NONE
SIPHO040v1_p0028   26990 ..   27009 + -10.7  -4.50976   TAAGATAACCAGAGA            CCCCACG TATTTT CGTGGGG             TTTTATCGTATCAGA  91 33
SIPHO040v1_p0029 NONE
SIPHO040v1_p0030   31958 ..   31975 + -11.3  -3.19602   ACTGTAAAGCAGCGA             GAAGCCC TTCG GGGCTTC              TATTAATATAAGGAA  82 34
SIPHO040v1_p0031 NONE
SIPHO040v1_p0032   33941 ..   33974 +   -14  -4.55287   TAGCGCTATAAACGC     AAAAACCCCAGAGC CTCTCA GCTCTGGGGTTTTC      TTTTATGTGCGTCCG 100 90
SIPHO040v1_p0072   61188 ..   61207 + -13.6  -4.91109   CAATAAATTCTACAA            GCCCCTCA TTCG TGAGGGGC             TTTTTGTCCTAAGGA 100 35
SIPHO040v1_p0073 NONE
SIPHO040v1_p0074 NONE
SIPHO040v1_p0075   64926 ..   64953 + -12.2  -3.45366   TTTATTACTTGCCAA        GGGACTATTATG TTGA TATAATAGTCCC         TTAATTAATTGGAGA  89 42
SIPHO040v1_p0076 NONE
SIPHO040v1_p0077 NONE
        thyA   66204 ..   66223 +  -6.4   -4.2535   GTATAAATGAAAAAA            TCACTTGC TTCG GCGGGTGA             TTTTCCGTATAATAT  71 35
SIPHO040v1_p0079 NONE
SIPHO040v1_p0080 NONE
SIPHO040v1_p0081 NONE
SIPHO040v1_p0082   67717 ..   67746 +  -3.8  -3.78556   TCCCTACATCAAGTG       TTTATATTAAAG AATCGG CTTTCATATAAA        TTCTTAAATTCTTAT  54 150
SIPHO040v1_p0083   68102 ..   68114 +  -2.7  -2.84732   TTCTCTTGCCTAAAC                TTGAA AAA TTCGA                TATAATAACTTTCCA  42 66
SIPHO040v1_p0084   68317 ..   68328 +    -3  -2.50074   CAGTAGAGTATACCG                CTTT CAGT AAAG                 GTCTCTTCTAAAAAG  41 3
SIPHO040v1_p0085   69222 ..   69235 +  -5.2  -3.35197   AGTGGTAGTCTGAGA               GGGG CTGCAA CCCC                TTGGTGTATATGGGC  54 370
SIPHO040v1_p0086   70242 ..   70259 +  -3.3  -2.98823   CACAGTAGTGCTTAC             CCCGTGT GCGA ATCCGGG              TCTCTCTACCAAACA  45 136
SIPHO040v1_ptRNA1 NONE
SIPHO040v1_ptRNA3   70783 ..   70795 +  -4.1  -3.17075   TTCTTCTGGGAGATT                TAGGT CAT GCCTA                TTAGGTTCAAGAGAA  48 148
SIPHO040v1_p0087 NONE
SIPHO040v1_ptRNA4 NONE
SIPHO040v1_ptRNA5 NONE
SIPHO040v1_p0088 NONE
SIPHO040v1_p0089 NONE
SIPHO040v1_ptRNA6   71978 ..   72015 +  -7.3  -2.87963   CTCCGCTACCAAATA   TTTTGAAATAATTTCTT GCTA AAGAGTTTATTTCAAAG    TATAATAGTTCTACA  60 30
SIPHO040v1_ptRNA7   72126 ..   72140 +  -2.1  -2.84602   TAGCCAGTTCAAATC              TGGTCG TACC CG-CCA               ATTTAATGGAGTAAC  41 11
SIPHO040v1_p0090   72427 ..   72443 +  -6.5  -2.78715   TGTCTGCGCCATGAT              CGGGG TTCGATT CCCCG              TATCCTCGCCAAATT  55 63
SIPHO040v1_ptRNA9   72941 ..   72955 +  -4.2  -3.40899   ACCAAATAATGGAAG               CCACCT CGA AGCTGG               TTCTCGTCAGAAGTT  50 37
SIPHO040v1_p0091 NONE
SIPHO040v1_ptRNA10   73589 ..   73600 +  -2.2  -3.48395   AAATTCTTGATGACA                CTGT TACC GCAG                 TTATGTAGGGACAGT  47 215
SIPHO040v1_p0092   73974 ..   73999 +  -2.5  -3.65996   CTTGGAAAGCGCTAC         GAGTCTAACGG CTTA CAGTTCGATTC          TGTTTCTCTCTGCCA  50 69
SIPHO040v1_p0093   74250 ..   74284 + -15.8  -2.79796   AATTAACCGCTATCT     CAGGAGTACACTCCTG TCT CAGGAGTACACTCCTG     TCTAGTAAGGTCAAG 100 71
SIPHO040v1_pmiscRNA1   75169 ..   75180 +  -2.2  -4.37658   CGTTAGCCATAATCT                CAGG CTAA TCTG                 TTTTGTAGCACACTT  59 20
SIPHO040v1_ptRNA11 NONE
SIPHO040v1_ptRNA12   75695 ..   75711 +  -2.9  -3.01712   AGGAATCCGGAGAGG              TCGTCCA CAC TAGGCGA              TGTTGAAGGGGAGAG  43 116
SIPHO040v1_p0095   75976 ..   75993 +  -4.1  -3.16564   GGATTCCAAACCCGT             GGAATAG GGTT CGATTCC              TTACTCCCGTGCCAA  48 52
SIPHO040v1_ptRNA13 NONE
SIPHO040v1_ptRNA14   76353 ..   76390 +  -4.1  -2.87132   GGTCTCCCTGCTAAG   GAGTTCGAGTGGAAACG CTTT CGGTTCGATTCCGACTC    TCTCTGCCAAACAAA  46 73
SIPHO040v1_p0096   76595 ..   76608 +  -4.5  -3.41745   AGTGACTCTCAAGCG               CACTC TGGC GGGTG                TTGATGTTCTAGGGG  52 45
SIPHO040v1_ptRNA15   76801 ..   76829 +  -5.3  -5.07275   CGCTTCCTTCTAATT       AGCCCCA-ACCA GTAAAA TGGTGTGGGGCA        TTTTTGTGTCTGTCA  79 58
SIPHO040v1_p0097 NONE
SIPHO040v1_p0098 NONE
SIPHO040v1_p0099 NONE
SIPHO040v1_p0100   78140 ..   78152 +  -4.9  -2.52623   GAAGCACAGTTTTCC                GTATA ATA TATAC                ATATTCTGAAAAAAC  48 85
SIPHO040v1_p0101 NONE
SIPHO040v1_p0102   78654 ..   78676 +  -3.5  -4.74215   GTTCTTAACTAAAAA           GAGATTGTA CTGGA TATAGTCTC           TTTTATTAATAATCT  67 45
SIPHO040v1_p0103 NONE
SIPHO040v1_p0104   79121 ..   79137 +  -3.7  -2.57564   CGTTTCCACCAAGAA              TACCGTA AGG TACAGTA              ATTATGGCAGGATCA  45 8
SIPHO040v1_p0105   79318 ..   79334 +  -3.7  -3.55622   TGAAGAGTCGAGGTA              TGTGATT GCA AACCACA              TTTAAGAGGGTTCGA  52 86
SIPHO040v1_p0106   79904 ..   79921 +  -5.5  -2.52464   ATTCCTCCACCCTGT             GCCAAAC AATG GGTTGGC              TAGATTAGCACAAAG  50 114
SIPHO040v1_p0107 NONE
SIPHO040v1_p0108 NONE
SIPHO040v1_p0109 NONE
SIPHO040v1_p0110   81857 ..   81873 +  -7.2  -4.71426   AATACCAAACAGAAA              CCTCGC CTTGT GCGGGG              TTTTCTTGGTACAAG  83 39
SIPHO040v1_p0111 NONE
SIPHO040v1_p0112   82778 ..   82795 +  -9.9  -4.42765   TTCTATAATGGTTAG             GCATGGA ATTG TCCATGC              TTTCATTTTTTAAGA  90 64
SIPHO040v1_p0113   83306 ..   83327 + -11.5  -5.55769   AGTAGATAACTTCAA           GCCCTGCGG ACTA CCGTGGGGC            TTTTTTCTTATCAAA 100 36
SIPHO040v1_p0114 NONE
SIPHO040v1_p0115   84747 ..   84770 +  -2.6  -3.05266   AACTTCCATGACGTG          TTC-CATATTG AAT TAATATGAGAA          TAATTTACTTCTCGT  43 5
SIPHO040v1_p0116   85000 ..   85010 +    -4   -2.8082   GCAGGGCATAATTAC                 TGAT TTT ATCA                 CTTGTTAAATGACTG  46 7
SIPHO040v1_p0117   85380 ..   85422 +  -5.1  -2.94099   AACCTATTATACCTC GCATGTTGGT-ATGGCTTACT TCT AGT-AGTCATGACTGACGTGC TCTATCATACCAACC  51 49
SIPHO040v1_p0118 NONE
SIPHO040v1_p0119 NONE
SIPHO040v1_p0120 NONE
SIPHO040v1_p0121 NONE
SIPHO040v1_p0122 NONE
SIPHO040v1_p0123 NONE
SIPHO040v1_p0124   88671 ..   88691 +  -5.3  -5.16681   GAATAATGGTGGCGG            GGCGCGG CTAAATT CCGCGCA            TTTTCTTATTTTTGG  79 35
SIPHO040v1_p0125 NONE
SIPHO040v1_p0126 NONE
SIPHO040v1_p0127 NONE
SIPHO040v1_p0128   89940 ..   89957 + -11.3  -4.93595   GTGCTTTATAATCAA             GGAGACC TTCG GGTCTCC              TTTTTGCGTTTTTGT  95 30
SIPHO040v1_p0129 NONE
SIPHO040v1_p0130 NONE
SIPHO040v1_p0131 NONE
SIPHO040v1_p0132 NONE
SIPHO040v1_p0133 NONE
SIPHO040v1_p0134 NONE
SIPHO040v1_p0135 NONE
SIPHO040v1_p0136 NONE
SIPHO040v1_p0137   93697 ..   93722 +  -4.7  -3.57792   TGTCTAGAGACAGGT         CGGTGGCAG-CG ATA CGATTGTCACTG         TTTGGGGCTAAGTCC  55 99
SIPHO040v1_p0139 NONE
SIPHO040v1_p0140 NONE
SIPHO040v1_p0141 NONE
SIPHO040v1_p0142   95129 ..   95152 +  -9.6  -4.34402   AGTAGTATTTTTTAT          GGCGTAGTCT TTCG GGACTATGCC           TTTTCCTGTAGGAGG  90 19
SIPHO040v1_p0143 NONE
SIPHO040v1_p0144 NONE
SIPHO040v1_p0145 NONE
SIPHO040v1_p0146   96399 ..   96409 +    -4  -3.51934   TGGACTTTGATCGTT                 CTTT TGA AAAG                 TATTTCTAGACAAAA  52 6
SIPHO040v1_p0147 NONE
SIPHO040v1_p0148   97833 ..   97848 + -10.4  -4.32233   GTAAAGACTAAAATG              GGAGCC TTCG GGCTCC               TTTTCGCGTTTTTGT  90 180
SIPHO040v1_p0149 NONE
SIPHO040v1_p0150 NONE
SIPHO040v1_p0151 NONE
SIPHO040v1_p0152 NONE
SIPHO040v1_p0153 NONE
SIPHO040v1_p0154 NONE
SIPHO040v1_p0155   99745 ..   99761 +  -2.3  -4.07568   CCTAACAGGGGGAGA              TTGTTTA TGA TATACAA              TTTTGGCGAAGCAGC  53 16
SIPHO040v1_p0156 NONE
SIPHO040v1_p0157 NONE
SIPHO040v1_p0158 NONE
SIPHO040v1_p0159 NONE
SIPHO040v1_p0160 NONE
SIPHO040v1_p0161 NONE
SIPHO040v1_p0162 NONE
SIPHO040v1_p0163 NONE
SIPHO040v1_p0164 NONE
SIPHO040v1_p0165  103688 ..  103705 +  -6.9   -4.5115   TTAGATTGATCAAAT             AGGGAGC TTCG GCTCCCC              TTTTGCGTTTTTGTA  79 37
SIPHO040v1_p0166 NONE
SIPHO040v1_p0167 NONE
SIPHO040v1_p0168  105257 ..  105273 +    -3  -4.07568   CAAGTATTTATTAAA              CAGATA ACAGA TGTCTG              TTTTGAGGAACAGGA  55 171
SIPHO040v1_p0169 NONE
SIPHO040v1_p0170  106603 ..  106620 +  -3.3  -2.83403   CTAGCATCTTACAAA             CCATCCC AGAA GGAGTGG              ATTTAATGGGCAGAA  44 2
SIPHO040v1_p0171 NONE
SIPHO040v1_p0172 NONE
SIPHO040v1_p0173 NONE
SIPHO040v1_p0174 NONE
SIPHO040v1_p0175  108829 ..  108840 +  -7.2  -2.80612   AAGTCATCAGTTTCA                GGGG ATTT CCCC                 GTTGTTCAGCTTCGC  60 129
SIPHO040v1_p0176  110171 ..  110183 +  -9.1  -2.90496   TGAGAGCGCCTGTAA                GCCAC GCA GTGGC                TAGTTTGGCGAGCCC  68 293
SIPHO040v1_p0184  112734 ..  112753 -  -4.3  -2.91274   TGTACTTTAATTATA            GCAGTTA GTTAGA TAACCGC             CAGTTTTAAAGTGTG  48 48
SIPHO040v1_p0183 NONE
SIPHO040v1_p0182  112190 ..  112200 -  -6.8  -2.59323   AAAACCGCTTAGAAT                 CGCT TAC AGCG                 CGTTTAAACGCCATT  56 44
SIPHO040v1_p0181  111764 ..  111780 -  -2.2  -3.04398   GCCCTTTTTGAAAAT              CCGG TGGCGGTAT CCGG              TCGGGGCACTCTTTG  42 96
SIPHO040v1_p0180  111244 ..  111261 -  -9.1  -3.17194   ATTTTCCCAATCTAA             CCGCGCT CAAT AGCGCAG              TTGCATAATTGTCAA  70 129
SIPHO040v1_p0179 NONE
SIPHO040v1_p0178 NONE
SIPHO040v1_p0177  110327 ..  110344 -  -8.4  -4.21408   AAGGTCAAAATGAAA             CCCCGT CACGTT ACGGGG              TAACAGTTAAAATCT  82 43
SIPHO040v1_p0138   93256 ..   93272 -  -2.2  -4.55383   AATCTACAAAAAGAA              CTAGCG CGCAT CGGTAG              ACTGATAGCGGAAAA  61 373
SIPHO040v1_p0094   74260 ..   74274 -   -10  -2.82834   TATCTCAGGAGTACA               CTCCTG TCT CAGGAG               TACACTCCTGTCTAG  73 160
SIPHO040v1_p0071 NONE
SIPHO040v1_p0070 NONE
SIPHO040v1_p0069   59055 ..   59074 -  -7.8   -4.9181   ATATAATAGCAAAAA            TCCCCCGC GAAT GCAAGGGA             TTTTTTTAGTATTTA  86 38
SIPHO040v1_p0068   58393 ..   58407 -  -2.7  -3.54424   TTGGAGCCCTTCAAA               CGAGG TAAAT CCACG               TAAGTATGGCTAATG  48 45
SIPHO040v1_p0067 NONE
SIPHO040v1_p0066 NONE
SIPHO040v1_p0065 NONE
SIPHO040v1_p0064 NONE
SIPHO040v1_p0063 NONE
SIPHO040v1_p0062 NONE
SIPHO040v1_p0061 NONE
SIPHO040v1_p0060 NONE
SIPHO040v1_p0059 NONE
SIPHO040v1_p0058 NONE
SIPHO040v1_p0057   52203 ..   52225 -  -5.7  -3.60151   TCTTTTAAATTAGAA           GACTATTAT ATCAA ATAATAGCC           TGTATAGCTAATGTT  58 53
SIPHO040v1_p0056 NONE
SIPHO040v1_p0055 NONE
SIPHO040v1_p0054 NONE
SIPHO040v1_p0053 NONE
SIPHO040v1_p0052 NONE
SIPHO040v1_p0051   49663 ..   49675 -  -7.7  -4.43576   ATTATAGACAAGAAA                TGACG CCG CGTCA                ATCTGAGTTTTTATT  80 23
        ligA   48759 ..   48778 -  -2.1  -3.57119   TATATATTCTCCAAA            GAGTAGC TTTCGT GCTAGTC             TTTTAATAATTGATG  47 20
SIPHO040v1_p0049   47964 ..   47984 - -13.3  -5.60689   TCACATAATAAAAAA            GGGTAGAGC ATA GCCCTACCC            TTTCAAATTCACACA 100 50
SIPHO040v1_p0048   46498 ..   46517 -    -5  -4.83243   TCCACATAAAAGAAA            TGGACTAA AGCA TCAGCCCA             GTCCATTACTTAACA  74 35
SIPHO040v1_p0047 NONE
SIPHO040v1_p0046 NONE
SIPHO040v1_p0045   42499 ..   42536 -  -9.2  -3.17075   TGTTGGCGAATGGAA   TACAGGGGGAATGTGC AATTAA GCACACTCTGCCTGTA    GGATTTCTCCGATGT  70 6
SIPHO040v1_p0044 NONE
SIPHO040v1_p0043 NONE
SIPHO040v1_p0042 NONE
SIPHO040v1_p0041   39349 ..   39368 - -11.4  -3.89346   GCCTTAGCTGAGAAA            GGGAGAGC CGTA GCCCTCCC             TTAGAATTAATTAGT  90 36
SIPHO040v1_p0040 NONE
SIPHO040v1_p0039 NONE
SIPHO040v1_p0038 NONE
SIPHO040v1_p0037 NONE
SIPHO040v1_p0036 NONE
SIPHO040v1_p0035 NONE
SIPHO040v1_p0034 NONE
         dut   33946 ..   33969 - -14.6  -4.84529   CTATAAACGCAAAAA          CCCCAGAGCC TCTC AGCTCTGGGG           TTTTCTTTTATGTGC 100 33
SIPHO040v1_p0007    4764 ..    4791 - -10.5  -5.67063   TTTATTATAAAAAAA        GCCCCCGAGTC AATTAA GACACGAGGGC         TCGAAGGCTAACCGG 100 33
