LOCUS KT779274 4919 bp DNA linear PHG 28-MAR-2016 DEFINITION Vibrio phage pre-CTX, partial genome. ACCESSION KT779274 VERSION KT779274.1 KEYWORDS . SOURCE Vibrio phage pre-CTX ORGANISM Vibrio phage pre-CTX Viruses; ssDNA viruses; Inoviridae; unclassified Inoviridae. REFERENCE 1 (bases 1 to 4919) AUTHORS Monakhova,E.V., Pisanov,R.V., Arkhangel'skaya,I.V. and Titova,S.V. TITLE Genetic diversity of Vibrio cholerae islolated in Russia and neighbouring countries JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919) AUTHORS Monakhova,E.V., Pisanov,R.V. and Ivanov,S.A. TITLE Direct Submission JOURNAL Submitted (17-SEP-2015) Cholera Microbiology, Research Institute for Plague Control, 17/40 M.Gorkogo, Rostov-on-Don, Rostov Region 344002, Russia COMMENT ##Assembly-Data-START## Assembly Method :: Contig Express v. 1 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..4919 /organism="Vibrio phage pre-CTX" /proviral /mol_type="genomic DNA" /isolation_source="feces from cholera patient" /host="Vibrio cholerae; biovar: El Tor; strain: 18329" /db_xref="taxon:689414" /country="Russia: Tatarstan" /collection_date="2001" gene 188..436 /gene="cep" CDS 188..436 /gene="cep" /codon_start=1 /transl_table=11 /product="core encoded pilin" /protein_id="AMR44219.1" /translation="MFSSLKNKLNTFKSTLSLGVFLLFSAFANQALAAADAGLVTEVT KTLGTSKDTVIALGPLIMGVVGAIVLIVTVIGLIRKAK" gene 447..1730 /gene="orfU" CDS 447..1730 /gene="orfU" /note="OrfU" /codon_start=1 /transl_table=11 /product="pIII-CTX" /protein_id="AMR44220.1" /translation="MAGSLWLSGHHYRLCVGLIFGLREEGERSPFFMRYFLLFLTLLF LSPSVTASAINCDPNTTTSHQLLFGFGSPIVQSVLFDGCMLDIEKDDYGFVWSCLSNE NGDYCKGLYKPRFSQGVSPNWPMCDLSGASAERCIYPYCPEGEECVPLPPSPPSDSPV DGLSSSFKSAFNQVYKNQSEMASTLNHVSGQVSHSQDMVQLNTKFHADRVLESVTAVN NRLGGQMEYLEEIRIDVWDTQREVRKAKDELYSRVAAVSYDVLYSELNVLRAIDELKD SLGGTVVPPNPDQPNPTPPDSSSPNYTGALNTISKKLNTLETISQQLDTMNTALSGRC SNPERCQFPIREAETELETAQQNLKQMINEKITQSALHQFKGSAAVPSFCSYVEAFGY NLCFDFSLFSENLHIIRMIVLAMAYILAAMLILFR" gene 1727..2020 /gene="ace" CDS 1727..2020 /gene="ace" /codon_start=1 /transl_table=11 /product="accessory cholera enterotoxin" /protein_id="AMR44221.1" /translation="MMLMMDTLYDWLIDGFTWLVIKLGIMWIESKIFVIQFFWEMSQK VIDMFTIYPLIQQAIDMLPPQYSGFLFFLGLDQALAIVLQALMTRFALRALNL" gene 2017..3216 /gene="zot" CDS 2017..3216 /gene="zot" /codon_start=1 /transl_table=11 /product="zonula occludens toxin" /protein_id="AMR44222.1" /translation="MSIFIHHGAPGSYKTSGALWLRLLPAIKSGRHIITNVRGLNLER MAKYLKMDVSDISIEFIDTDHPDGRLTMARFWHWARKDAFLFIDECGRIWPPRLTVTN LKALDTPPDLVAEDRPESFEVAFDMHRHHGWDICLTTPNIAKVHNMIREAAEIGYRHF NRATVGLGAKFTLTTHDAANSGQMDSHALTRQVKKIPSPIFKMYASTTTGKARDTMAG TALWKDRKILFLFGMVFLMFSYSFYGLHDNPIFTGGNDATIESEQSEPQSKATVGNAV GSKAVAPASFGFCIGRLCVQDGFVTVGDERYRLVDNLDIPYRGLWATGHHIYKDTLTV FFETESGSVPTELFASSYRYKVLPLPDFNHFVVFDTFAAQALWVEVKRGLPIKTENDK KGLNSIF" gene 3315..4091 /gene="ctxA" CDS 3315..4091 /gene="ctxA" /codon_start=1 /transl_table=11 /product="cholera toxin subunit A" /protein_id="AMR44223.1" /translation="MVKIIFVFFIFLSSFSYANDDKLYRADSRPPDEIKQSGGLMPRG QSEYFDRGTQMNINLYDHARGTQTGFVRHDDGYVSTSISLRSAHLVGQTILSGHSTYY IYVIATAPNMFNVNDVLGAYSPHPDEQEVSALGGIPYSQIYGWYRVHFGVLDEQLHRN RGYRDRYYSNLDIAPAADGYGLAGFPPEHRAWREEPWIHHAPPGCGNAPRSSMSNTCD EKTQSLGVKFLDEYQSKVKRQIFSGYQSDIDTHNRIKDEL" gene 4088..4462 /gene="cxtB" /allele="B1" /note="classical type" CDS 4088..4462 /gene="cxtB" /allele="B1" /codon_start=1 /transl_table=11 /product="cholera toxin subunit B" /protein_id="AMR44224.1" /translation="MIKLKFGVFFTVLLSSAYAHGTPQNITDLCAEYHNTQIHTLNDK IFSYTESLAGKREMAIITFKNGATFQVEVPGSQHIDSQKKAIERMKDTLRIAYLTEAK VEKLCVWNNKTPHAIAAISMAN" ORIGIN 1 caacgtgccg ggcggcaagc cattggataa acctcaaccc attaaatctt gatggactta 61 acccattatg tctggaacga ggcgctctat ttcgcggtgg tcaaggccgt tctcgttctg 121 ttctttacat cctttgggat tggcgcggtt gctagtctca ttttatccac ggtaaaggag 181 aagctacatg tttagctcac tgaaaaacaa acttaatacc tttaaaagca cgctttcact 241 cggggttttc ttgctgtttt ccgcatttgc taaccaagca ctcgcggctg ctgatgcggg 301 tttggtcacg gaagtcacca aaacactggg caccagtaaa gatacggtga ttgcgcttgg 361 gccgctcatc atgggcgtgg tgggggcaat tgttctgatt gttaccgtga ttggcttaat 421 tcgtaaggct aaatagtgct tgagttgtgg ctgggtctct ttggctcagc ggtcatcatt 481 atcggctttg tgtcgggctt atatttggtt taagggagga gggcgagcgt tcgccctttt 541 ttatgcgcta ttttctactg tttttgacat tgctctttct ttctccatcg gtaacggctt 601 ccgccatcaa ttgtgatcct aatactacta cgtcacacca gttacttttc ggttttggct 661 ctcccattgt gcaatcggtg ttatttgatg gctgcatgct tgatattgaa aaagatgact 721 atggttttgt ttggtcttgt ctctcaaatg aaaatgggga ctattgcaag gggctctaca 781 aaccccgttt ttcacaaggg gtatccccga actggccgat gtgcgacttg tccggagcat 841 ctgcagagcg ctgcatttat ccttattgcc ctgaggggga agagtgcgtt cccttaccac 901 cttcaccgcc cagtgattcc cctgttgatg ggctgagcag ctcgtttaag tctgcgttca 961 atcaggtcta taaaaaccaa tcagagatgg cttcgactct caatcatgtc agtggtcagg 1021 tgtcccactc tcaagatatg gttcagctca atacgaagtt tcacgcggat cgtgttcttg 1081 agagtgtcac cgcagtcaac aatcgtttgg gtgggcaaat ggagtatctt gaggaaatcc 1141 gcattgatgt ttgggatacg caacgggagg taagaaaagc caaggatgag ctttactctc 1201 gtgttgcggc tgtttcatac gatgtgcttt atagcgagct taatgtcctt cgggcgattg 1261 atgaacttaa agactcactc ggtgggactg tcgttccgcc taacccagac caacccaatc 1321 ccacgccacc cgatagcagc agccccaatt atacaggggc gcttaatacc atctctaaaa 1381 agctcaatac cttagagacg atttcacagc aactcgacac catgaacacg gcgctatcag 1441 ggcgctgtag taaccctgaa cgctgtcagt ttccgatacg agaggccgag accgagttag 1501 aaacggctca gcagaattta aagcagatga tcaacgagaa aatcacccag tcggctttgc 1561 atcagttcaa aggctcggcg gcggtgcctt cgttttgctc ctatgtcgag gcgtttggtt 1621 acaacctctg ttttgacttc tccctctttt ctgaaaacct gcacatcatc cgcatgatag 1681 tgctcgcgat ggcgtacatt ctggccgcca tgctcatttt gtttaggtga tgcttatgat 1741 ggacaccctt tatgactggc taattgatgg ctttacgtgg cttgtgatca agctcggtat 1801 tatgtggatt gagagcaaga tttttgttat ccaattcttc tgggagatgt cccagaaagt 1861 gattgatatg tttaccatct atccgcttat ccaacaggct atcgatatgc tgcctcctca 1921 atacagcggc tttctgttct ttttagggtt agaccaagcg ctggctatcg tgcttcaggc 1981 tttgatgacc cgttttgccc tgcgagcgtt aaacctatga gtatctttat tcatcacggc 2041 gcgccaggct cttataaaac gtcaggggca ttatggcttc gtctgctgcc ggcgattaag 2101 tcaggccgtc acatcatcac gaatgtgcga ggcttaaacc ttgaacgcat ggctaagtac 2161 ttaaaaatgg atgtctcgga catcagtatc gagtttattg atacagacca tcctgacggt 2221 cgcttaacga tggcgcgttt ttggcactgg gcgagaaagg acgcgtttct ctttatcgat 2281 gaatgtggtc gcatctggcc gccgagactg acggtcacca atttaaaggc gctcgacacg 2341 ccgccggatt tggtcgcaga ggataggccg gagagctttg aggtggcttt tgacatgcat 2401 cgtcaccacg gctgggatat ctgcctaacc acgcctaaca ttgccaaagt gcacaacatg 2461 ataagagagg cggcggagat agggtatcgc cactttaacc gcgccaccgt ggggctaggg 2521 gcaaagttta ccctgaccac ccatgatgca gccaactctg gacagatgga ctcgcacgcg 2581 ctgacacgcc aagtcaaaaa aattccaagt ccgattttta agatgtacgc aagcaccacg 2641 acaggcaaag cacgcgacac gatggccgga acggcgctgt ggaaagacag aaagatcctt 2701 ttcttgttcg gcatggtttt tttgatgttc tcttattcgt tttacggctt acacgacaat 2761 ccaattttta cagggggaaa tgatgcaact atcgagtcag agcaatccga gcctcagtca 2821 aaggctactg ttgggaatgc tgtcgggagc aaggcggttg ctcctgcgtc ttttggtttt 2881 tgtattggtc ggctttgtgt ccaagatggt tttgtcactg ttggtgatga gcgttatcgc 2941 ctcgtagaca atttggacat tccttatcgt ggtctatggg cgacaggtca tcacatttac 3001 aaggatacgc ttacagtgtt ttttgaaacc gagagtggca gcgtcccaac agagctgttt 3061 gcatcgagct accgctacaa ggtgctaccg ttaccggatt tcaatcactt tgtggtgttc 3121 gatacctttg cagcgcaagc gctgtgggta gaagtgaaac ggggtttacc gataaaaaca 3181 gaaaatgata aaaaaggact aaatagtata ttttgatttt tgatttttga tttttgattt 3241 caaataatac aaatttattt acttatttaa ttgttttgat caattatttt tctgttaaac 3301 aaagggagca ttatatggta aagataatat ttgtgttttt tattttctta tcatcatttt 3361 catatgcaaa tgatgataag ttatatcggg cagattctag acctcctgat gaaataaagc 3421 agtcaggtgg tcttatgcca agaggacaga gtgagtactt tgaccgaggt actcaaatga 3481 atatcaacct ttatgatcat gcaagaggaa ctcagacggg atttgttagg cacgatgatg 3541 gatatgtttc cacctcaatt agtttgagaa gtgcccactt agtgggtcaa actatattgt 3601 ctggtcattc tacttattat atatatgtta tagccactgc acccaacatg tttaacgtta 3661 atgatgtatt aggggcatac agtcctcatc cagatgaaca agaagtttct gctttaggtg 3721 ggattccata ctcccaaata tatggatggt atcgagttca ttttggggtg cttgatgaac 3781 aattacatcg taataggggc tacagagata gatattacag taacttagat attgctccag 3841 cagcagatgg ttatggattg gcaggtttcc ctccggagca tagagcttgg agggaagagc 3901 cgtggattca tcatgcaccg ccgggttgtg ggaatgctcc aagatcatcg atgagtaata 3961 cttgcgatga aaaaacccaa agtctaggtg taaaattcct tgacgaatac caatctaaag 4021 ttaaaagaca aatattttca ggctatcaat ctgatattga tacacataat agaattaagg 4081 atgaattatg attaaattaa aatttggtgt tttttttaca gttttactat cttcagcata 4141 tgcacatgga acacctcaaa atattactga tttgtgtgca gaataccaca acacacaaat 4201 acatacgcta aatgataaga tattttcgta tacagaatct ctagctggaa aaagagagat 4261 ggctatcatt acttttaaga atggtgcaac ttttcaagta gaagtaccag gtagtcaaca 4321 tatagattca caaaaaaaag cgattgaaag gatgaaggat accctgagga ttgcatatct 4381 tactgaagct aaagtcgaaa agttatgtgt atggaataat aaaacgcctc atgcgattgc 4441 cgcaattagt atggcaaatt aagatataaa aaagcccacc tcagtgggct tttttgtggt 4501 tcgatgatga gaagcaaccg ttttgcccaa acatgtatta ctgcaagtat gatgttttta 4561 ttccacatcc ttagtgcgta ttatgtatgt tatgttaaat taaggcataa aaagaggtcg 4621 caaaccccaa tctgctccct attcttaatc cagcattaaa cataactgta tttaccataa 4681 aatacctaat aatcatattt atcatttgac aatgttaagt atgattatta gtgacattgt 4741 cactgtactt acgtcaattg tgtgcaccaa agtgtttctg taatcccttg atttgaaaac 4801 ctgttaccaa cctttcaaat gtgtttaggt ttgcttcgct aaaaaagaac tccacactaa 4861 ggcggagttc ttggatattt tggcagcttg tttttgctgc ttaaatttgg gctacgcga //