locus-tag class description VSVS05_00004 PF03167 Uracil DNA glycosylase superfamily VSVS05_00005 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VSVS05_00006 PF04222 Protein of unknown function (DUF416) VSVS05_00007 PF00571 CBS domain VSVS05_00007 PF01595 Cyclin M transmembrane N-terminal domain VSVS05_00008 PF00216 Bacterial DNA-binding protein VSVS05_00010 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VSVS05_00010 PF02844 Phosphoribosylglycinamide synthetase, N domain VSVS05_00010 PF02843 Phosphoribosylglycinamide synthetase, C domain VSVS05_00011 PF01808 AICARFT/IMPCHase bienzyme VSVS05_00011 PF02142 MGS-like domain VSVS05_00012 PF13411 MerR HTH family regulatory protein VSVS05_00013 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_00013 PF05230 MASE2 domain VSVS05_00014 PF02954 Bacterial regulatory protein, Fis family VSVS05_00015 PF01207 Dihydrouridine synthase (Dus) VSVS05_00017 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VSVS05_00017 PF00289 Biotin carboxylase, N-terminal domain VSVS05_00017 PF02785 Biotin carboxylase C-terminal domain VSVS05_00018 PF00364 Biotin-requiring enzyme VSVS05_00019 PF01220 Dehydroquinase class II VSVS05_00020 PF13193 AMP-binding enzyme C-terminal domain VSVS05_00020 PF00501 AMP-binding enzyme VSVS05_00020 PF16177 Acetyl-coenzyme A synthetase N-terminus VSVS05_00023 PF12832 MFS_1 like family VSVS05_00024 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_00024 PF00512 His Kinase A (phospho-acceptor) domain VSVS05_00024 PF00072 Response regulator receiver domain VSVS05_00024 PF09308 LuxQ, periplasmic VSVS05_00026 PF00474 Sodium:solute symporter family VSVS05_00028 PF01914 MarC family integral membrane protein VSVS05_00029 PF00196 Bacterial regulatory proteins, luxR family VSVS05_00029 PF00072 Response regulator receiver domain VSVS05_00030 PF11412 Disulphide bond corrector protein DsbC VSVS05_00030 PF02683 Cytochrome C biogenesis protein transmembrane region VSVS05_00031 PF03605 Anaerobic c4-dicarboxylate membrane transporter VSVS05_00032 PF00206 Lyase VSVS05_00032 PF10415 Fumarase C C-terminus VSVS05_00033 PF04186 FxsA cytoplasmic membrane protein VSVS05_00034 PF00588 SpoU rRNA Methylase family VSVS05_00035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_00035 PF00512 His Kinase A (phospho-acceptor) domain VSVS05_00035 PF16527 Two-component sensor protein CpxA, periplasmic domain VSVS05_00035 PF00672 HAMP domain VSVS05_00036 PF00072 Response regulator receiver domain VSVS05_00036 PF00486 Transcriptional regulatory protein, C terminal VSVS05_00037 PF07813 LTXXQ motif family protein VSVS05_00038 PF01545 Cation efflux family VSVS05_00038 PF16916 Dimerisation domain of Zinc Transporter VSVS05_00039 PF00365 Phosphofructokinase VSVS05_00040 PF02308 MgtC family VSVS05_00042 PF04055 Radical SAM superfamily VSVS05_00043 PF09285 Elongation factor P, C-terminal VSVS05_00043 PF08207 Elongation factor P (EF-P) KOW-like domain VSVS05_00043 PF01132 Elongation factor P (EF-P) OB domain VSVS05_00044 PF01040 UbiA prenyltransferase family VSVS05_00045 PF03737 Aldolase/RraA VSVS05_00046 PF01554 MatE VSVS05_00047 PF00121 Triosephosphate isomerase VSVS05_00050 PF00485 Phosphoribulokinase / Uridine kinase family VSVS05_00055 PF03143 Elongation factor Tu C-terminal domain VSVS05_00055 PF03144 Elongation factor Tu domain 2 VSVS05_00055 PF00009 Elongation factor Tu GTP binding domain VSVS05_00056 PF00584 SecE/Sec61-gamma subunits of protein translocation complex VSVS05_00057 PF00467 KOW motif VSVS05_00057 PF02357 Transcription termination factor nusG VSVS05_00058 PF00298 Ribosomal protein L11, RNA binding domain VSVS05_00058 PF03946 Ribosomal protein L11, N-terminal domain VSVS05_00060 PF00466 Ribosomal protein L10 VSVS05_00062 PF04563 RNA polymerase beta subunit VSVS05_00062 PF04560 RNA polymerase Rpb2, domain 7 VSVS05_00062 PF00562 RNA polymerase Rpb2, domain 6 VSVS05_00062 PF10385 RNA polymerase beta subunit external 1 domain VSVS05_00062 PF04565 RNA polymerase Rpb2, domain 3 VSVS05_00062 PF04561 RNA polymerase Rpb2, domain 2 VSVS05_00063 PF10385 RNA polymerase beta subunit external 1 domain VSVS05_00063 PF04565 RNA polymerase Rpb2, domain 3 VSVS05_00063 PF04560 RNA polymerase Rpb2, domain 7 VSVS05_00063 PF00562 RNA polymerase Rpb2, domain 6 VSVS05_00063 PF04561 RNA polymerase Rpb2, domain 2 VSVS05_00063 PF04563 RNA polymerase beta subunit VSVS05_00064 PF00623 RNA polymerase Rpb1, domain 2 VSVS05_00064 PF04983 RNA polymerase Rpb1, domain 3 VSVS05_00064 PF05000 RNA polymerase Rpb1, domain 4 VSVS05_00064 PF04998 RNA polymerase Rpb1, domain 5 VSVS05_00064 PF04997 RNA polymerase Rpb1, domain 1 VSVS05_00065 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ VSVS05_00066 PF00293 NUDIX domain VSVS05_00066 PF09297 NADH pyrophosphatase zinc ribbon domain VSVS05_00067 PF01208 Uroporphyrinogen decarboxylase (URO-D) VSVS05_00068 PF00440 Bacterial regulatory proteins, tetR family VSVS05_00068 PF08360 QacR-like protein, C-terminal region VSVS05_00070 PF01551 Peptidase family M23 VSVS05_00071 PF06415 BPG-independent PGAM N-terminus (iPGM_N) VSVS05_00071 PF01676 Metalloenzyme superfamily VSVS05_00073 PF03600 Citrate transporter VSVS05_00073 PF02080 TrkA-C domain VSVS05_00074 PF02666 Phosphatidylserine decarboxylase VSVS05_00075 PF03193 RsgA GTPase VSVS05_00076 PF00929 Exonuclease VSVS05_00089 PF08331 Domain of unknown function (DUF1730) VSVS05_00090 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE VSVS05_00091 PF01520 N-acetylmuramoyl-L-alanine amidase VSVS05_00092 PF08676 MutL C terminal dimerisation domain VSVS05_00092 PF01119 DNA mismatch repair protein, C-terminal domain VSVS05_00094 PF17209 Hfq protein VSVS05_00095 PF16360 GTP-binding GTPase Middle Region VSVS05_00095 PF01926 50S ribosome-binding GTPase VSVS05_00095 PF13167 GTP-binding GTPase N-terminal VSVS05_00096 PF12221 Bacterial membrane protein N terminal VSVS05_00096 PF01145 SPFH domain / Band 7 family VSVS05_00097 PF01145 SPFH domain / Band 7 family VSVS05_00098 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) VSVS05_00101 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VSVS05_00101 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VSVS05_00102 PF13309 HTH domain VSVS05_00102 PF08348 YheO-like PAS domain VSVS05_00103 PF02635 DsrE/DsrF-like family VSVS05_00104 PF02635 DsrE/DsrF-like family VSVS05_00106 PF00164 Ribosomal protein S12/S23 VSVS05_00107 PF00177 Ribosomal protein S7p/S5e VSVS05_00108 PF03144 Elongation factor Tu domain 2 VSVS05_00108 PF03764 Elongation factor G, domain IV VSVS05_00108 PF00679 Elongation factor G C-terminus VSVS05_00108 PF14492 Elongation Factor G, domain II VSVS05_00108 PF00009 Elongation factor Tu GTP binding domain VSVS05_00109 PF03143 Elongation factor Tu C-terminal domain VSVS05_00109 PF03144 Elongation factor Tu domain 2 VSVS05_00109 PF00009 Elongation factor Tu GTP binding domain VSVS05_00110 PF04324 BFD-like [2Fe-2S] binding domain VSVS05_00111 PF00210 Ferritin-like domain VSVS05_00112 PF01250 Ribosomal protein S6 VSVS05_00113 PF00436 Single-strand binding protein family VSVS05_00114 PF01084 Ribosomal protein S18 VSVS05_00115 PF03948 Ribosomal protein L9, C-terminal domain VSVS05_00115 PF01281 Ribosomal protein L9, N-terminal domain VSVS05_00117 PF03796 DnaB-like helicase C terminal domain VSVS05_00117 PF00772 DnaB-like helicase N terminal domain VSVS05_00118 PF01168 Alanine racemase, N-terminal domain VSVS05_00118 PF00842 Alanine racemase, C-terminal domain VSVS05_00119 PF01894 Uncharacterised protein family UPF0047 VSVS05_00120 PF00342 Phosphoglucose isomerase VSVS05_00125 PF00005 ABC transporter VSVS05_00128 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VSVS05_00129 PF01625 Peptide methionine sulfoxide reductase VSVS05_00130 PF01103 Surface antigen VSVS05_00130 PF07244 Surface antigen variable number repeat VSVS05_00130 PF17243 POTRA domain TamA domain 1 VSVS05_00131 PF04357 TamB, inner membrane protein subunit of TAM complex VSVS05_00132 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like VSVS05_00134 PF00719 Inorganic pyrophosphatase VSVS05_00135 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain VSVS05_00136 PF02875 Mur ligase family, glutamate ligase domain VSVS05_00136 PF08245 Mur ligase middle domain VSVS05_00136 PF01225 Mur ligase family, catalytic domain VSVS05_00137 PF02441 Flavoprotein VSVS05_00140 PF00528 Binding-protein-dependent transport system inner membrane component VSVS05_00141 PF00005 ABC transporter VSVS05_00142 PF00005 ABC transporter VSVS05_00143 PF04751 Protein of unknown function (DUF615) VSVS05_00144 PF01523 Putative modulator of DNA gyrase VSVS05_00145 PF03652 Holliday junction resolvase VSVS05_00146 PF02622 Uncharacterized ACR, COG1678 VSVS05_00147 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VSVS05_00147 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VSVS05_00148 PF04452 RNA methyltransferase VSVS05_00149 PF04231 Endonuclease I VSVS05_00150 PF17283 SprT-like zinc ribbon domain VSVS05_00150 PF10263 SprT-like family VSVS05_00153 PF00438 S-adenosylmethionine synthetase, N-terminal domain VSVS05_00153 PF02772 S-adenosylmethionine synthetase, central domain VSVS05_00153 PF02773 S-adenosylmethionine synthetase, C-terminal domain VSVS05_00154 PF02779 Transketolase, pyrimidine binding domain VSVS05_00154 PF00456 Transketolase, thiamine diphosphate binding domain VSVS05_00154 PF02780 Transketolase, C-terminal domain VSVS05_00156 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VSVS05_00156 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VSVS05_00157 PF00162 Phosphoglycerate kinase VSVS05_00158 PF01116 Fructose-bisphosphate aldolase class-II VSVS05_00159 PF05552 Conserved TM helix VSVS05_00159 PF00924 Mechanosensitive ion channel VSVS05_00160 PF01810 LysE type translocator VSVS05_00161 PF03466 LysR substrate binding domain VSVS05_00161 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_00162 PF04402 Protein of unknown function (DUF541) VSVS05_00163 PF02887 Pyruvate kinase, alpha/beta domain VSVS05_00163 PF00224 Pyruvate kinase, barrel domain VSVS05_00164 PF00455 DeoR C terminal sensor domain VSVS05_00164 PF08220 DeoR-like helix-turn-helix domain VSVS05_00165 PF01380 SIS domain VSVS05_00166 PF03472 Autoinducer binding domain VSVS05_00166 PF00196 Bacterial regulatory proteins, luxR family VSVS05_00168 PF00765 Autoinducer synthase VSVS05_00170 PF08240 Alcohol dehydrogenase GroES-like domain VSVS05_00170 PF00107 Zinc-binding dehydrogenase VSVS05_00171 PF00893 Small Multidrug Resistance protein VSVS05_00172 PF03480 Bacterial extracellular solute-binding protein, family 7 VSVS05_00175 PF01527 Transposase VSVS05_00176 PF13276 HTH-like domain VSVS05_00176 PF00665 Integrase core domain VSVS05_00176 PF13333 Integrase core domain VSVS05_00177 PF00860 Permease family VSVS05_00178 PF08448 PAS fold VSVS05_00178 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_00180 PF04545 Sigma-70, region 4 VSVS05_00180 PF04539 Sigma-70 region 3 VSVS05_00180 PF04542 Sigma-70 region 2 VSVS05_00180 PF00140 Sigma-70 factor, region 1.2 VSVS05_00180 PF03979 Sigma-70 factor, region 1.1 VSVS05_00180 PF04546 Sigma-70, non-essential region VSVS05_00181 PF01807 CHC2 zinc finger VSVS05_00181 PF08275 DNA primase catalytic core, N-terminal domain VSVS05_00181 PF10410 DnaB-helicase binding domain of primase VSVS05_00181 PF08278 DNA primase DnaG DnaB-binding VSVS05_00182 PF09424 Yqey-like protein VSVS05_00183 PF01165 Ribosomal protein S21 VSVS05_00184 PF00814 Glycoprotease family VSVS05_00185 PF00561 alpha/beta hydrolase fold VSVS05_00186 PF02660 Glycerol-3-phosphate acyltransferase VSVS05_00187 PF02152 Dihydroneopterin aldolase VSVS05_00188 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VSVS05_00190 PF04977 Septum formation initiator VSVS05_00191 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VSVS05_00192 PF02542 YgbB family VSVS05_00193 PF01142 tRNA pseudouridine synthase D (TruD) VSVS05_00194 PF01975 Survival protein SurE VSVS05_00196 PF01476 LysM domain VSVS05_00196 PF01551 Peptidase family M23 VSVS05_00197 PF00140 Sigma-70 factor, region 1.2 VSVS05_00197 PF04542 Sigma-70 region 2 VSVS05_00197 PF04545 Sigma-70, region 4 VSVS05_00197 PF04539 Sigma-70 region 3 VSVS05_00198 PF03471 Transporter associated domain VSVS05_00198 PF01595 Cyclin M transmembrane N-terminal domain VSVS05_00198 PF00571 CBS domain VSVS05_00199 PF01578 Cytochrome C assembly protein VSVS05_00200 PF02881 SRP54-type protein, helical bundle domain VSVS05_00200 PF00448 SRP54-type protein, GTPase domain VSVS05_00200 PF02978 Signal peptide binding domain VSVS05_00201 PF00886 Ribosomal protein S16 VSVS05_00203 PF01746 tRNA (Guanine-1)-methyltransferase VSVS05_00204 PF01245 Ribosomal protein L19 VSVS05_00205 PF03884 DNA gyrase inhibitor YacG VSVS05_00206 PF07072 Cell division protein VSVS05_00207 PF01121 Dephospho-CoA kinase VSVS05_00208 PF01478 Type IV leader peptidase family VSVS05_00208 PF06750 Bacterial Peptidase A24 N-terminal domain VSVS05_00209 PF00482 Type II secretion system (T2SS), protein F VSVS05_00210 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VSVS05_00210 PF00437 Type II/IV secretion system protein VSVS05_00212 PF01624 MutS domain I VSVS05_00212 PF05188 MutS domain II VSVS05_00212 PF00488 MutS domain V VSVS05_00212 PF05190 MutS family domain IV VSVS05_00212 PF05192 MutS domain III VSVS05_00213 PF02464 Competence-damaged protein VSVS05_00214 PF00154 recA bacterial DNA recombination protein VSVS05_00215 PF01411 tRNA synthetases class II (A) VSVS05_00215 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VSVS05_00215 PF02272 DHHA1 domain VSVS05_00216 PF13840 ACT domain VSVS05_00216 PF00696 Amino acid kinase family VSVS05_00216 PF01842 ACT domain VSVS05_00217 PF02599 Global regulator protein family VSVS05_00227 PF04277 Oxaloacetate decarboxylase, gamma chain VSVS05_00228 PF02436 Conserved carboxylase domain VSVS05_00228 PF00364 Biotin-requiring enzyme VSVS05_00228 PF00682 HMGL-like VSVS05_00229 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VSVS05_00231 PF09335 SNARE associated Golgi protein VSVS05_00232 PF00675 Insulinase (Peptidase family M16) VSVS05_00232 PF05193 Peptidase M16 inactive domain VSVS05_00233 PF04262 Glutamate-cysteine ligase VSVS05_00235 PF02664 S-Ribosylhomocysteinase (LuxS) VSVS05_00243 PF01464 Transglycosylase SLT domain VSVS05_00243 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VSVS05_00245 PF00719 Inorganic pyrophosphatase VSVS05_00246 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VSVS05_00247 PF02378 Phosphotransferase system, EIIC VSVS05_00248 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit VSVS05_00249 PF11975 Family 4 glycosyl hydrolase C-terminal domain VSVS05_00249 PF02056 Family 4 glycosyl hydrolase VSVS05_00250 PF04794 YdjC-like protein VSVS05_00251 PF00356 Bacterial regulatory proteins, lacI family VSVS05_00262 PF00694 Aconitase C-terminal domain VSVS05_00263 PF00330 Aconitase family (aconitate hydratase) VSVS05_00264 PF00180 Isocitrate/isopropylmalate dehydrogenase VSVS05_00265 PF00682 HMGL-like VSVS05_00265 PF08502 LeuA allosteric (dimerisation) domain VSVS05_00266 PF01569 PAP2 superfamily VSVS05_00268 PF03466 LysR substrate binding domain VSVS05_00268 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_00269 PF00501 AMP-binding enzyme VSVS05_00270 PF00205 Thiamine pyrophosphate enzyme, central domain VSVS05_00270 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VSVS05_00270 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VSVS05_00271 PF10369 Small subunit of acetolactate synthase VSVS05_00272 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VSVS05_00272 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VSVS05_00272 PF01842 ACT domain VSVS05_00273 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VSVS05_00274 PF01812 5-formyltetrahydrofolate cyclo-ligase family VSVS05_00277 PF01494 FAD binding domain VSVS05_00278 PF01494 FAD binding domain VSVS05_00282 PF03937 Flavinator of succinate dehydrogenase VSVS05_00284 PF00890 FAD binding domain VSVS05_00284 PF02910 Fumarate reductase flavoprotein C-term VSVS05_00285 PF08281 Sigma-70, region 4 VSVS05_00285 PF04542 Sigma-70 region 2 VSVS05_00286 PF03873 Anti sigma-E protein RseA, C-terminal domain VSVS05_00286 PF03872 Anti sigma-E protein RseA, N-terminal domain VSVS05_00287 PF17188 MucB/RseB C-terminal domain VSVS05_00287 PF03888 MucB/RseB N-terminal domain VSVS05_00289 PF00009 Elongation factor Tu GTP binding domain VSVS05_00289 PF00679 Elongation factor G C-terminus VSVS05_00289 PF03144 Elongation factor Tu domain 2 VSVS05_00289 PF06421 GTP-binding protein LepA C-terminus VSVS05_00290 PF10502 Signal peptidase, peptidase S26 VSVS05_00291 PF00035 Double-stranded RNA binding motif VSVS05_00291 PF14622 Ribonuclease-III-like VSVS05_00292 PF01926 50S ribosome-binding GTPase VSVS05_00292 PF07650 KH domain VSVS05_00293 PF11967 Recombination protein O N terminal VSVS05_00293 PF02565 Recombination protein O C terminal VSVS05_00294 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ VSVS05_00295 PF01648 4'-phosphopantetheinyl transferase superfamily VSVS05_00296 PF00672 HAMP domain VSVS05_00296 PF00072 Response regulator receiver domain VSVS05_00296 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_00296 PF00512 His Kinase A (phospho-acceptor) domain VSVS05_00296 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VSVS05_00296 PF01627 Hpt domain VSVS05_00297 PF01938 TRAM domain VSVS05_00297 PF05958 tRNA (Uracil-5-)-methyltransferase VSVS05_00298 PF04607 Region found in RelA / SpoT proteins VSVS05_00298 PF02824 TGS domain VSVS05_00298 PF13291 ACT domain VSVS05_00299 PF03819 MazG nucleotide pyrophosphohydrolase domain VSVS05_00300 PF06418 CTP synthase N-terminus VSVS05_00300 PF00117 Glutamine amidotransferase class-I VSVS05_00301 PF03952 Enolase, N-terminal domain VSVS05_00301 PF00113 Enolase, C-terminal TIM barrel domain VSVS05_00302 PF01966 HD domain VSVS05_00302 PF01743 Poly A polymerase head domain VSVS05_00302 PF12627 Probable RNA and SrmB- binding site of polymerase A VSVS05_00303 PF01471 Putative peptidoglycan binding domain VSVS05_00303 PF13401 AAA domain VSVS05_00305 PF08239 Bacterial SH3 domain VSVS05_00306 PF01384 Phosphate transporter family VSVS05_00307 PF01865 Protein of unknown function DUF47 VSVS05_00308 PF01928 CYTH domain VSVS05_00309 PF00027 Cyclic nucleotide-binding domain VSVS05_00309 PF00520 Ion transport protein VSVS05_00310 PF02743 Cache domain VSVS05_00310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS05_00310 PF00672 HAMP domain VSVS05_00311 PF03710 Glutamate-ammonia ligase adenylyltransferase VSVS05_00311 PF08335 GlnD PII-uridylyltransferase VSVS05_00313 PF00072 Response regulator receiver domain VSVS05_00313 PF00486 Transcriptional regulatory protein, C terminal VSVS05_00315 PF03737 Aldolase/RraA VSVS05_00317 PF00742 Homoserine dehydrogenase VSVS05_00317 PF03447 Homoserine dehydrogenase, NAD binding domain VSVS05_00317 PF13840 ACT domain VSVS05_00317 PF01842 ACT domain VSVS05_00317 PF00696 Amino acid kinase family VSVS05_00318 PF08544 GHMP kinases C terminal VSVS05_00318 PF00288 GHMP kinases N terminal domain VSVS05_00319 PF14821 Threonine synthase N terminus VSVS05_00319 PF00291 Pyridoxal-phosphate dependent enzyme VSVS05_00320 PF03458 UPF0126 domain VSVS05_00321 PF01497 Periplasmic binding protein VSVS05_00323 PF01048 Phosphorylase superfamily VSVS05_00324 PF00312 Ribosomal protein S15 VSVS05_00326 PF07719 Tetratricopeptide repeat VSVS05_00326 PF13181 Tetratricopeptide repeat VSVS05_00328 PF01554 MatE VSVS05_00330 PF00149 Calcineurin-like phosphoesterase VSVS05_00330 PF02872 5'-nucleotidase, C-terminal domain VSVS05_00333 PF00563 EAL domain VSVS05_00333 PF03707 Bacterial signalling protein N terminal repeat VSVS05_00333 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_00335 PF13508 Acetyltransferase (GNAT) domain VSVS05_00337 PF00583 Acetyltransferase (GNAT) family VSVS05_00338 PF00009 Elongation factor Tu GTP binding domain VSVS05_00338 PF03144 Elongation factor Tu domain 2 VSVS05_00338 PF16658 Class II release factor RF3, C-terminal domain VSVS05_00339 PF00270 DEAD/DEAH box helicase VSVS05_00339 PF00271 Helicase conserved C-terminal domain VSVS05_00340 PF05175 Methyltransferase small domain VSVS05_00341 PF05525 Branched-chain amino acid transport protein VSVS05_00342 PF03462 PCRF domain VSVS05_00342 PF00472 RF-1 domain VSVS05_00343 PF00152 tRNA synthetases class II (D, K and N) VSVS05_00343 PF01336 OB-fold nucleic acid binding domain VSVS05_00344 PF00158 Sigma-54 interaction domain VSVS05_00344 PF02954 Bacterial regulatory protein, Fis family VSVS05_00344 PF00072 Response regulator receiver domain VSVS05_00345 PF02321 Outer membrane efflux protein VSVS05_00346 PF00293 NUDIX domain VSVS05_00347 PF06853 Protein of unknown function (DUF1249) VSVS05_00348 PF00149 Calcineurin-like phosphoesterase VSVS05_00349 PF05728 Uncharacterised protein family (UPF0227) VSVS05_00350 PF00204 DNA gyrase B VSVS05_00350 PF00986 DNA gyrase B subunit, carboxyl terminus VSVS05_00350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_00350 PF01751 Toprim domain VSVS05_00351 PF03989 DNA gyrase C-terminal domain, beta-propeller VSVS05_00351 PF00521 DNA gyrase/topoisomerase IV, subunit A VSVS05_00352 PF13180 PDZ domain VSVS05_00353 PF00595 PDZ domain VSVS05_00354 PF06295 Protein of unknown function (DUF1043) VSVS05_00355 PF03969 AFG1-like ATPase VSVS05_00358 PF00380 Ribosomal protein S9/S16 VSVS05_00359 PF00355 Rieske [2Fe-2S] domain VSVS05_00359 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal VSVS05_00360 PF00033 Cytochrome b/b6/petB VSVS05_00360 PF00032 Cytochrome b(C-terminal)/b6/petD VSVS05_00361 PF02167 Cytochrome C1 family VSVS05_00362 PF02798 Glutathione S-transferase, N-terminal domain VSVS05_00362 PF00043 Glutathione S-transferase, C-terminal domain VSVS05_00363 PF04386 Stringent starvation protein B VSVS05_00364 PF04972 BON domain VSVS05_00365 PF13580 SIS domain VSVS05_00366 PF02021 Uncharacterised protein family UPF0102 VSVS05_00367 PF04348 LppC putative lipoprotein VSVS05_00368 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VSVS05_00370 PF04999 Cell division protein FtsL VSVS05_00371 PF03717 Penicillin-binding Protein dimerisation domain VSVS05_00371 PF00905 Penicillin binding protein transpeptidase domain VSVS05_00372 PF01225 Mur ligase family, catalytic domain VSVS05_00372 PF08245 Mur ligase middle domain VSVS05_00372 PF02875 Mur ligase family, glutamate ligase domain VSVS05_00373 PF02875 Mur ligase family, glutamate ligase domain VSVS05_00373 PF08245 Mur ligase middle domain VSVS05_00373 PF01225 Mur ligase family, catalytic domain VSVS05_00374 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 VSVS05_00374 PF00953 Glycosyl transferase family 4 VSVS05_00375 PF02875 Mur ligase family, glutamate ligase domain VSVS05_00375 PF08245 Mur ligase middle domain VSVS05_00376 PF01098 Cell cycle protein VSVS05_00377 PF03033 Glycosyltransferase family 28 N-terminal domain VSVS05_00377 PF04101 Glycosyltransferase family 28 C-terminal domain VSVS05_00378 PF02875 Mur ligase family, glutamate ligase domain VSVS05_00378 PF08245 Mur ligase middle domain VSVS05_00378 PF01225 Mur ligase family, catalytic domain VSVS05_00379 PF08478 POTRA domain, FtsQ-type VSVS05_00379 PF03799 Cell division protein FtsQ VSVS05_00380 PF02491 SHS2 domain inserted in FTSA VSVS05_00381 PF00091 Tubulin/FtsZ family, GTPase domain VSVS05_00381 PF12327 FtsZ family, C-terminal domain VSVS05_00382 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase VSVS05_00384 PF07516 SecA Wing and Scaffold domain VSVS05_00384 PF02810 SEC-C motif VSVS05_00384 PF07517 SecA DEAD-like domain VSVS05_00384 PF01043 SecA preprotein cross-linking domain VSVS05_00385 PF00293 NUDIX domain VSVS05_00386 PF01113 Dihydrodipicolinate reductase, N-terminus VSVS05_00386 PF05173 Dihydrodipicolinate reductase, C-terminus VSVS05_00387 PF00117 Glutamine amidotransferase class-I VSVS05_00387 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VSVS05_00388 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VSVS05_00388 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VSVS05_00388 PF02142 MGS-like domain VSVS05_00389 PF01925 Sulfite exporter TauE/SafE VSVS05_00390 PF03466 LysR substrate binding domain VSVS05_00390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_00391 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading VSVS05_00391 PF18416 N-acetylglucosamine binding protein domain 2 VSVS05_00392 PF01228 Glycine radical VSVS05_00393 PF01261 Xylose isomerase-like TIM barrel VSVS05_00394 PF03167 Uracil DNA glycosylase superfamily VSVS05_00397 PF01235 Sodium:alanine symporter family VSVS05_00398 PF03883 Peroxide stress protein YaaA VSVS05_00400 PF01026 TatD related DNase VSVS05_00401 PF07670 Nucleoside recognition VSVS05_00401 PF07662 Na+ dependent nucleoside transporter C-terminus VSVS05_00401 PF01773 Na+ dependent nucleoside transporter N-terminus VSVS05_00402 PF01791 DeoC/LacD family aldolase VSVS05_00403 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain VSVS05_00403 PF00591 Glycosyl transferase family, a/b domain VSVS05_00403 PF02885 Glycosyl transferase family, helical bundle domain VSVS05_00404 PF01676 Metalloenzyme superfamily VSVS05_00405 PF01048 Phosphorylase superfamily VSVS05_00407 PF18429 Domain of unknown function (DUF5609) VSVS05_00409 PF18073 Rubredoxin metal binding domain VSVS05_00411 PF00679 Elongation factor G C-terminus VSVS05_00411 PF14492 Elongation Factor G, domain II VSVS05_00411 PF03764 Elongation factor G, domain IV VSVS05_00411 PF00009 Elongation factor Tu GTP binding domain VSVS05_00411 PF03144 Elongation factor Tu domain 2 VSVS05_00412 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_00412 PF03466 LysR substrate binding domain VSVS05_00414 PF00501 AMP-binding enzyme VSVS05_00415 PF12833 Helix-turn-helix domain VSVS05_00415 PF02805 Metal binding domain of Ada VSVS05_00420 PF04972 BON domain VSVS05_00420 PF00263 Bacterial type II and III secretion system protein VSVS05_00420 PF13629 Pilus formation protein N terminal region VSVS05_00426 PF00437 Type II/IV secretion system protein VSVS05_00431 PF03466 LysR substrate binding domain VSVS05_00431 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_00436 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VSVS05_00436 PF01464 Transglycosylase SLT domain VSVS05_00437 PF14602 Hexapeptide repeat of succinyl-transferase VSVS05_00437 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle VSVS05_00440 PF00578 AhpC/TSA family VSVS05_00440 PF10417 C-terminal domain of 1-Cys peroxiredoxin VSVS05_00441 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_00441 PF03466 LysR substrate binding domain VSVS05_00442 PF01274 Malate synthase VSVS05_00443 PF00463 Isocitrate lyase family VSVS05_00444 PF00571 CBS domain VSVS05_00445 PF00672 HAMP domain VSVS05_00445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS05_00445 PF12729 Four helix bundle sensory module for signal transduction VSVS05_00446 PF02547 Queuosine biosynthesis protein VSVS05_00448 PF01702 Queuine tRNA-ribosyltransferase VSVS05_00449 PF02699 Preprotein translocase subunit VSVS05_00450 PF07549 SecD/SecF GG Motif VSVS05_00450 PF13721 SecD export protein N-terminal TM region VSVS05_00450 PF02355 Protein export membrane protein VSVS05_00451 PF02355 Protein export membrane protein VSVS05_00451 PF07549 SecD/SecF GG Motif VSVS05_00453 PF03411 Penicillin-insensitive murein endopeptidase VSVS05_00455 PF00037 4Fe-4S binding domain VSVS05_00457 PF04381 Putative exonuclease, RdgC VSVS05_00458 PF00072 Response regulator receiver domain VSVS05_00458 PF00486 Transcriptional regulatory protein, C terminal VSVS05_00459 PF00989 PAS fold VSVS05_00459 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_00459 PF00512 His Kinase A (phospho-acceptor) domain VSVS05_00459 PF11808 Phosphate regulon sensor protein PhoR VSVS05_00460 PF12849 PBP superfamily domain VSVS05_00461 PF02541 Ppx/GppA phosphatase family VSVS05_00462 PF00528 Binding-protein-dependent transport system inner membrane component VSVS05_00463 PF00528 Binding-protein-dependent transport system inner membrane component VSVS05_00464 PF00005 ABC transporter VSVS05_00465 PF01895 PhoU domain VSVS05_00469 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_00469 PF03466 LysR substrate binding domain VSVS05_00470 PF03932 CutC family VSVS05_00475 PF13533 Biotin-lipoyl like VSVS05_00476 PF00873 AcrB/AcrD/AcrF family VSVS05_00477 PF07130 YebG protein VSVS05_00478 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_00478 PF03466 LysR substrate binding domain VSVS05_00480 PF17946 RecC C-terminal domain VSVS05_00481 PF12705 PD-(D/E)XK nuclease superfamily VSVS05_00481 PF00580 UvrD/REP helicase N-terminal domain VSVS05_00481 PF13361 UvrD-like helicase C-terminal domain VSVS05_00482 PF13538 UvrD-like helicase C-terminal domain VSVS05_00484 PF00696 Amino acid kinase family VSVS05_00484 PF00583 Acetyltransferase (GNAT) family VSVS05_00486 PF06725 3D domain VSVS05_00486 PF03562 MltA specific insert domain VSVS05_00487 PF00899 ThiF family VSVS05_00488 PF02657 Fe-S metabolism associated domain VSVS05_00489 PF04055 Radical SAM superfamily VSVS05_00490 PF13464 Domain of unknown function (DUF4115) VSVS05_00491 PF04551 GcpE protein VSVS05_00492 PF03129 Anticodon binding domain VSVS05_00492 PF13393 Histidyl-tRNA synthetase VSVS05_00493 PF09976 Tetratricopeptide repeat-like domain VSVS05_00494 PF13360 PQQ-like domain VSVS05_00495 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VSVS05_00495 PF01926 50S ribosome-binding GTPase VSVS05_00498 PF13742 OB-fold nucleic acid binding domain VSVS05_00498 PF02601 Exonuclease VII, large subunit VSVS05_00499 PF00478 IMP dehydrogenase / GMP reductase domain VSVS05_00499 PF00571 CBS domain VSVS05_00501 PF03553 Na+/H+ antiporter family VSVS05_00502 PF01184 GPR1/FUN34/yaaH family VSVS05_00503 PF01235 Sodium:alanine symporter family VSVS05_00504 PF01053 Cys/Met metabolism PLP-dependent enzyme VSVS05_00505 PF05661 Protein of unknown function (DUF808) VSVS05_00506 PF00367 phosphotransferase system, EIIB VSVS05_00506 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VSVS05_00506 PF02378 Phosphotransferase system, EIIC VSVS05_00508 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain VSVS05_00508 PF00753 Metallo-beta-lactamase superfamily VSVS05_00508 PF10996 Beta-Casp domain VSVS05_00509 PF12729 Four helix bundle sensory module for signal transduction VSVS05_00509 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS05_00509 PF00672 HAMP domain VSVS05_00510 PF00583 Acetyltransferase (GNAT) family VSVS05_00510 PF00795 Carbon-nitrogen hydrolase VSVS05_00512 PF01979 Amidohydrolase family VSVS05_00514 PF00924 Mechanosensitive ion channel VSVS05_00516 PF02796 Helix-turn-helix domain of resolvase VSVS05_00516 PF00239 Resolvase, N terminal domain VSVS05_00521 PF13358 DDE superfamily endonuclease VSVS05_00535 PF04002 RadC-like JAB domain VSVS05_00547 PF00672 HAMP domain VSVS05_00547 PF02743 Cache domain VSVS05_00547 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS05_00548 PF01527 Transposase VSVS05_00550 PF01610 Transposase VSVS05_00550 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 VSVS05_00550 PF13542 Helix-turn-helix domain of transposase family ISL3 VSVS05_00551 PF13356 Arm DNA-binding domain VSVS05_00551 PF00589 Phage integrase family VSVS05_00552 PF01668 SmpB protein VSVS05_00553 PF03364 Polyketide cyclase / dehydrase and lipid transport VSVS05_00554 PF03658 RnfH family Ubiquitin VSVS05_00555 PF04355 SmpA / OmlA family VSVS05_00556 PF02463 RecF/RecN/SMC N terminal domain VSVS05_00559 PF01025 GrpE VSVS05_00561 PF00375 Sodium:dicarboxylate symporter family VSVS05_00563 PF00012 Hsp70 protein VSVS05_00564 PF00684 DnaJ central domain VSVS05_00564 PF00226 DnaJ domain VSVS05_00564 PF01556 DnaJ C terminal domain VSVS05_00570 PF03806 AbgT putative transporter family VSVS05_00571 PF03471 Transporter associated domain VSVS05_00571 PF00571 CBS domain VSVS05_00571 PF01595 Cyclin M transmembrane N-terminal domain VSVS05_00572 PF14437 MafB19-like deaminase VSVS05_00574 PF00497 Bacterial extracellular solute-binding proteins, family 3 VSVS05_00574 PF01464 Transglycosylase SLT domain VSVS05_00575 PF02769 AIR synthase related protein, C-terminal domain VSVS05_00575 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain VSVS05_00575 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal VSVS05_00578 PF06786 Uncharacterised protein family (UPF0253) VSVS05_00580 PF00551 Formyl transferase VSVS05_00581 PF02769 AIR synthase related protein, C-terminal domain VSVS05_00581 PF00586 AIR synthase related protein, N-terminal domain VSVS05_00583 PF00849 RNA pseudouridylate synthase VSVS05_00583 PF01479 S4 domain VSVS05_00584 PF01713 Smr domain VSVS05_00588 PF00854 POT family VSVS05_00589 PF00733 Asparagine synthase VSVS05_00589 PF13537 Glutamine amidotransferase domain VSVS05_00590 PF00999 Sodium/hydrogen exchanger family VSVS05_00590 PF02254 TrkA-N domain VSVS05_00591 PF01047 MarR family VSVS05_00591 PF00480 ROK family VSVS05_00592 PF01979 Amidohydrolase family VSVS05_00593 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VSVS05_00593 PF02378 Phosphotransferase system, EIIC VSVS05_00593 PF00367 phosphotransferase system, EIIB VSVS05_00594 PF00749 tRNA synthetases class I (E and Q), catalytic domain VSVS05_00594 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain VSVS05_00595 PF01475 Ferric uptake regulator family VSVS05_00597 PF00258 Flavodoxin VSVS05_00599 PF12697 Alpha/beta hydrolase family VSVS05_00600 PF17206 SeqA protein N-terminal domain VSVS05_00600 PF03925 SeqA protein C-terminal domain VSVS05_00601 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VSVS05_00601 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VSVS05_00601 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VSVS05_00601 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VSVS05_00604 PF01784 NIF3 (NGG1p interacting factor 3) VSVS05_00605 PF00285 Citrate synthase, C-terminal domain VSVS05_00606 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VSVS05_00607 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VSVS05_00608 PF02910 Fumarate reductase flavoprotein C-term VSVS05_00608 PF00890 FAD binding domain VSVS05_00609 PF13085 2Fe-2S iron-sulfur cluster binding domain VSVS05_00610 PF02779 Transketolase, pyrimidine binding domain VSVS05_00610 PF16078 2-oxoglutarate dehydrogenase N-terminus VSVS05_00610 PF16870 2-oxoglutarate dehydrogenase C-terminal VSVS05_00610 PF00676 Dehydrogenase E1 component VSVS05_00611 PF00364 Biotin-requiring enzyme VSVS05_00611 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VSVS05_00611 PF02817 e3 binding domain VSVS05_00612 PF00549 CoA-ligase VSVS05_00612 PF08442 ATP-grasp domain VSVS05_00613 PF00549 CoA-ligase VSVS05_00613 PF02629 CoA binding domain VSVS05_00618 PF04287 tRNA pseudouridine synthase C VSVS05_00619 PF00849 RNA pseudouridylate synthase VSVS05_00621 PF02780 Transketolase, C-terminal domain VSVS05_00621 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VSVS05_00621 PF02779 Transketolase, pyrimidine binding domain VSVS05_00622 PF00348 Polyprenyl synthetase VSVS05_00624 PF01618 MotA/TolQ/ExbB proton channel family VSVS05_00625 PF13677 Membrane MotB of proton-channel complex MotA/MotB VSVS05_00625 PF00691 OmpA family VSVS05_00626 PF02926 THUMP domain VSVS05_00626 PF02568 Thiamine biosynthesis protein (ThiI) VSVS05_00627 PF00665 Integrase core domain VSVS05_00627 PF13333 Integrase core domain VSVS05_00627 PF13276 HTH-like domain VSVS05_00628 PF01527 Transposase VSVS05_00629 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_00629 PF03466 LysR substrate binding domain VSVS05_00631 PF04241 Protein of unknown function (DUF423) VSVS05_00632 PF01728 FtsJ-like methyltransferase VSVS05_00632 PF18125 RlmM ferredoxin-like domain VSVS05_00633 PF01609 Transposase DDE domain VSVS05_00633 PF13006 Insertion element 4 transposase N-terminal VSVS05_00634 PF01367 5'-3' exonuclease, C-terminal SAM fold VSVS05_00634 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VSVS05_00635 PF03641 Possible lysine decarboxylase VSVS05_00635 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases VSVS05_00635 PF11892 Domain of unknown function (DUF3412) VSVS05_00636 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_00638 PF14489 QueF-like protein VSVS05_00638 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term VSVS05_00639 PF07348 Syd protein (SUKH-2) VSVS05_00640 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) VSVS05_00643 PF07687 Peptidase dimerisation domain VSVS05_00643 PF01546 Peptidase family M20/M25/M40 VSVS05_00644 PF03960 ArsC family VSVS05_00649 PF02335 Cytochrome c552 VSVS05_00651 PF13247 4Fe-4S dicluster domain VSVS05_00652 PF03916 Polysulphide reductase, NrfD VSVS05_00653 PF01578 Cytochrome C assembly protein VSVS05_00653 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VSVS05_00654 PF08534 Redoxin VSVS05_00655 PF03918 Cytochrome C biogenesis protein VSVS05_00656 PF11143 Protein of unknown function (DUF2919) VSVS05_00657 PF04261 Dyp-type peroxidase family VSVS05_00658 PF00700 Bacterial flagellin C-terminal helical region VSVS05_00658 PF00669 Bacterial flagellin N-terminal helical region VSVS05_00658 PF07196 Flagellin hook IN motif VSVS05_00659 PF07196 Flagellin hook IN motif VSVS05_00659 PF00700 Bacterial flagellin C-terminal helical region VSVS05_00659 PF00669 Bacterial flagellin N-terminal helical region VSVS05_00660 PF00700 Bacterial flagellin C-terminal helical region VSVS05_00660 PF07196 Flagellin hook IN motif VSVS05_00660 PF00669 Bacterial flagellin N-terminal helical region VSVS05_00661 PF03646 FlaG protein VSVS05_00662 PF02465 Flagellar hook-associated protein 2 N-terminus VSVS05_00662 PF07195 Flagellar hook-associated protein 2 C-terminus VSVS05_00662 PF07196 Flagellin hook IN motif VSVS05_00664 PF02561 Flagellar protein FliS VSVS05_00665 PF00158 Sigma-54 interaction domain VSVS05_00665 PF00072 Response regulator receiver domain VSVS05_00665 PF02954 Bacterial regulatory protein, Fis family VSVS05_00666 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_00666 PF00512 His Kinase A (phospho-acceptor) domain VSVS05_00667 PF00072 Response regulator receiver domain VSVS05_00667 PF02954 Bacterial regulatory protein, Fis family VSVS05_00667 PF00158 Sigma-54 interaction domain VSVS05_00668 PF02049 Flagellar hook-basal body complex protein FliE VSVS05_00669 PF01514 Secretory protein of YscJ/FliF family VSVS05_00669 PF08345 Flagellar M-ring protein C-terminal VSVS05_00670 PF14841 FliG middle domain VSVS05_00670 PF01706 FliG C-terminal domain VSVS05_00670 PF14842 FliG N-terminal domain VSVS05_00672 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VSVS05_00672 PF18269 T3SS EscN ATPase C-terminal domain VSVS05_00676 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VSVS05_00676 PF02154 Flagellar motor switch protein FliM VSVS05_00677 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VSVS05_00678 PF04347 Flagellar biosynthesis protein, FliO VSVS05_00679 PF00813 FliP family VSVS05_00680 PF01313 Bacterial export proteins, family 3 VSVS05_00681 PF01311 Bacterial export proteins, family 1 VSVS05_00682 PF01312 FlhB HrpN YscU SpaS Family VSVS05_00683 PF01312 FlhB HrpN YscU SpaS Family VSVS05_00684 PF01713 Smr domain VSVS05_00685 PF05175 Methyltransferase small domain VSVS05_00686 PF01264 Chorismate synthase VSVS05_00687 PF03458 UPF0126 domain VSVS05_00688 PF04315 Elongation factor P hydroxylase VSVS05_00692 PF08891 YfcL protein VSVS05_00694 PF01266 FAD dependent oxidoreductase VSVS05_00694 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VSVS05_00695 PF00109 Beta-ketoacyl synthase, N-terminal domain VSVS05_00695 PF02801 Beta-ketoacyl synthase, C-terminal domain VSVS05_00696 PF11890 Domain of unknown function (DUF3410) VSVS05_00696 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VSVS05_00696 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VSVS05_00697 PF02774 Semialdehyde dehydrogenase, dimerisation domain VSVS05_00697 PF01118 Semialdehyde dehydrogenase, NAD binding domain VSVS05_00701 PF17848 Acetyl-coA carboxylase zinc finger domain VSVS05_00701 PF01039 Carboxyl transferase domain VSVS05_00702 PF08245 Mur ligase middle domain VSVS05_00702 PF02875 Mur ligase family, glutamate ligase domain VSVS05_00703 PF05036 Sporulation related domain VSVS05_00704 PF02674 Colicin V production protein VSVS05_00705 PF00156 Phosphoribosyl transferase domain VSVS05_00706 PF00950 ABC 3 transport family VSVS05_00707 PF00005 ABC transporter VSVS05_00708 PF01297 Zinc-uptake complex component A periplasmic VSVS05_00710 PF04023 FeoA domain VSVS05_00711 PF07670 Nucleoside recognition VSVS05_00711 PF02421 Ferrous iron transport protein B VSVS05_00711 PF07664 Ferrous iron transport protein B C terminus VSVS05_00714 PF05746 DALR anticodon binding domain VSVS05_00714 PF00750 tRNA synthetases class I (R) VSVS05_00714 PF03485 Arginyl tRNA synthetase N terminal domain VSVS05_00715 PF06185 YecM protein VSVS05_00716 PF05193 Peptidase M16 inactive domain VSVS05_00716 PF00675 Insulinase (Peptidase family M16) VSVS05_00717 PF00300 Histidine phosphatase superfamily (branch 1) VSVS05_00718 PF00771 FHIPEP family VSVS05_00719 PF00448 SRP54-type protein, GTPase domain VSVS05_00720 PF10609 NUBPL iron-transfer P-loop NTPase VSVS05_00721 PF04542 Sigma-70 region 2 VSVS05_00721 PF04545 Sigma-70, region 4 VSVS05_00721 PF04539 Sigma-70 region 3 VSVS05_00722 PF00072 Response regulator receiver domain VSVS05_00723 PF04344 Chemotaxis phosphatase, CheZ VSVS05_00724 PF02895 Signal transducing histidine kinase, homodimeric domain VSVS05_00724 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_00724 PF01627 Hpt domain VSVS05_00724 PF01584 CheW-like domain VSVS05_00724 PF07194 P2 response regulator binding domain VSVS05_00725 PF00072 Response regulator receiver domain VSVS05_00725 PF01339 CheB methylesterase VSVS05_00726 PF13614 AAA domain VSVS05_00728 PF01584 CheW-like domain VSVS05_00730 PF00005 ABC transporter VSVS05_00731 PF03379 CcmB protein VSVS05_00732 PF01578 Cytochrome C assembly protein VSVS05_00734 PF03100 CcmE VSVS05_00735 PF01578 Cytochrome C assembly protein VSVS05_00735 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VSVS05_00736 PF08534 Redoxin VSVS05_00737 PF03918 Cytochrome C biogenesis protein VSVS05_00739 PF04333 MlaA lipoprotein VSVS05_00740 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VSVS05_00741 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VSVS05_00742 PF13358 DDE superfamily endonuclease VSVS05_00744 PF08281 Sigma-70, region 4 VSVS05_00744 PF04542 Sigma-70 region 2 VSVS05_00745 PF00108 Thiolase, N-terminal domain VSVS05_00745 PF02803 Thiolase, C-terminal domain VSVS05_00746 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VSVS05_00746 PF00378 Enoyl-CoA hydratase/isomerase VSVS05_00746 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VSVS05_00747 PF00881 Nitroreductase family VSVS05_00748 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_00748 PF03466 LysR substrate binding domain VSVS05_00749 PF00072 Response regulator receiver domain VSVS05_00752 PF00156 Phosphoribosyl transferase domain VSVS05_00753 PF12170 DNA polymerase III tau subunit V interacting with alpha VSVS05_00753 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding VSVS05_00753 PF12169 DNA polymerase III subunits gamma and tau domain III VSVS05_00754 PF02575 YbaB/EbfC DNA-binding family VSVS05_00755 PF13662 Toprim domain VSVS05_00755 PF02132 RecR protein VSVS05_00756 PF00230 Major intrinsic protein VSVS05_00757 PF07702 UTRA domain VSVS05_00757 PF00392 Bacterial regulatory proteins, gntR family VSVS05_00758 PF00367 phosphotransferase system, EIIB VSVS05_00758 PF02378 Phosphotransferase system, EIIC VSVS05_00759 PF02056 Family 4 glycosyl hydrolase VSVS05_00759 PF11975 Family 4 glycosyl hydrolase C-terminal domain VSVS05_00761 PF00248 Aldo/keto reductase family VSVS05_00762 PF03692 Putative zinc- or iron-chelating domain VSVS05_00763 PF04226 Transglycosylase associated protein VSVS05_00764 PF03692 Putative zinc- or iron-chelating domain VSVS05_00765 PF05552 Conserved TM helix VSVS05_00765 PF00924 Mechanosensitive ion channel VSVS05_00766 PF02028 BCCT, betaine/carnitine/choline family transporter VSVS05_00768 PF13847 Methyltransferase domain VSVS05_00769 PF01263 Aldose 1-epimerase VSVS05_00770 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VSVS05_00770 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VSVS05_00771 PF01641 SelR domain VSVS05_00773 PF07023 Protein of unknown function (DUF1315) VSVS05_00774 PF02810 SEC-C motif VSVS05_00775 PF00563 EAL domain VSVS05_00775 PF08668 HDOD domain VSVS05_00777 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VSVS05_00778 PF01406 tRNA synthetases class I (C) catalytic domain VSVS05_00778 PF09190 DALR domain VSVS05_00779 PF00265 Thymidine kinase VSVS05_00780 PF01176 Translation initiation factor 1A / IF-1 VSVS05_00781 PF04377 Arginine-tRNA-protein transferase, C terminus VSVS05_00781 PF04376 Arginine-tRNA-protein transferase, N terminus VSVS05_00782 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VSVS05_00783 PF05433 Glycine zipper 2TM domain VSVS05_00784 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VSVS05_00785 PF10692 Protein of unknown function (DUF2498) VSVS05_00786 PF01751 Toprim domain VSVS05_00786 PF08272 Topoisomerase I zinc-ribbon-like VSVS05_00786 PF01131 DNA topoisomerase VSVS05_00786 PF01396 Topoisomerase DNA binding C4 zinc finger VSVS05_00787 PF00483 Nucleotidyl transferase VSVS05_00789 PF00561 alpha/beta hydrolase fold VSVS05_00792 PF04993 TfoX N-terminal domain VSVS05_00792 PF04994 TfoX C-terminal domain VSVS05_00793 PF00356 Bacterial regulatory proteins, lacI family VSVS05_00794 PF02613 Nitrate reductase delta subunit VSVS05_00795 PF00072 Response regulator receiver domain VSVS05_00795 PF00486 Transcriptional regulatory protein, C terminal VSVS05_00796 PF02698 DUF218 domain VSVS05_00798 PF17192 MukF middle domain VSVS05_00798 PF17193 MukF C-terminal domain VSVS05_00798 PF03882 MukF winged-helix domain VSVS05_00799 PF04288 MukE-like family VSVS05_00800 PF16330 MukB hinge domain VSVS05_00800 PF04310 MukB N-terminal VSVS05_00801 PF04310 MukB N-terminal VSVS05_00801 PF16330 MukB hinge domain VSVS05_00804 PF18030 RimK PreATP-grasp domain VSVS05_00804 PF08443 RimK-like ATP-grasp domain VSVS05_00806 PF13649 Methyltransferase domain VSVS05_00807 PF01904 Protein of unknown function DUF72 VSVS05_00808 PF00152 tRNA synthetases class II (D, K and N) VSVS05_00808 PF02938 GAD domain VSVS05_00808 PF01336 OB-fold nucleic acid binding domain VSVS05_00809 PF00578 AhpC/TSA family VSVS05_00810 PF11412 Disulphide bond corrector protein DsbC VSVS05_00810 PF02683 Cytochrome C biogenesis protein transmembrane region VSVS05_00811 PF00849 RNA pseudouridylate synthase VSVS05_00812 PF03971 Monomeric isocitrate dehydrogenase VSVS05_00813 PF00313 'Cold-shock' DNA-binding domain VSVS05_00814 PF02617 ATP-dependent Clp protease adaptor protein ClpS VSVS05_00815 PF10431 C-terminal, D2-small domain, of ClpB protein VSVS05_00815 PF17871 AAA lid domain VSVS05_00815 PF00004 ATPase family associated with various cellular activities (AAA) VSVS05_00815 PF07724 AAA domain (Cdc48 subfamily) VSVS05_00815 PF02861 Clp amino terminal domain, pathogenicity island component VSVS05_00816 PF17871 AAA lid domain VSVS05_00816 PF02861 Clp amino terminal domain, pathogenicity island component VSVS05_00816 PF10431 C-terminal, D2-small domain, of ClpB protein VSVS05_00816 PF07724 AAA domain (Cdc48 subfamily) VSVS05_00816 PF00004 ATPase family associated with various cellular activities (AAA) VSVS05_00819 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_00819 PF03466 LysR substrate binding domain VSVS05_00823 PF01226 Formate/nitrite transporter VSVS05_00825 PF03649 Uncharacterised protein family (UPF0014) VSVS05_00826 PF06796 Periplasmic nitrate reductase protein NapE VSVS05_00827 PF03264 NapC/NirT cytochrome c family, N-terminal region VSVS05_00828 PF00384 Molybdopterin oxidoreductase VSVS05_00828 PF18364 Molybdopterin oxidoreductase N-terminal domain VSVS05_00828 PF01568 Molydopterin dinucleotide binding domain VSVS05_00830 PF02075 Crossover junction endodeoxyribonuclease RuvC VSVS05_00831 PF01330 RuvA N terminal domain VSVS05_00831 PF07499 RuvA, C-terminal domain VSVS05_00832 PF05496 Holliday junction DNA helicase RuvB P-loop domain VSVS05_00832 PF05491 RuvB C-terminal winged helix domain VSVS05_00832 PF17864 RuvB AAA lid domain VSVS05_00833 PF01654 Cytochrome bd terminal oxidase subunit I VSVS05_00834 PF02322 Cytochrome bd terminal oxidase subunit II VSVS05_00835 PF08173 Membrane bound YbgT-like protein VSVS05_00837 PF03061 Thioesterase superfamily VSVS05_00838 PF01618 MotA/TolQ/ExbB proton channel family VSVS05_00839 PF02472 Biopolymer transport protein ExbD/TolR VSVS05_00842 PF00691 OmpA family VSVS05_00843 PF16331 TolA binding protein trimerisation VSVS05_00843 PF13174 Tetratricopeptide repeat VSVS05_00844 PF02445 Quinolinate synthetase A protein VSVS05_00847 PF00512 His Kinase A (phospho-acceptor) domain VSVS05_00847 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_00847 PF09308 LuxQ, periplasmic VSVS05_00847 PF00072 Response regulator receiver domain VSVS05_00848 PF06610 L-alanine exporter VSVS05_00851 PF13391 HNH endonuclease VSVS05_00853 PF13421 SPFH domain-Band 7 family VSVS05_00856 PF10063 Uncharacterized integral membrane protein (DUF2301) VSVS05_00857 PF01979 Amidohydrolase family VSVS05_00859 PF00512 His Kinase A (phospho-acceptor) domain VSVS05_00859 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_00859 PF09308 LuxQ, periplasmic VSVS05_00859 PF00072 Response regulator receiver domain VSVS05_00860 PF03150 Di-haem cytochrome c peroxidase VSVS05_00860 PF00034 Cytochrome c VSVS05_00860 PF14376 Haem-binding domain VSVS05_00864 PF00672 HAMP domain VSVS05_00864 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_00864 PF00512 His Kinase A (phospho-acceptor) domain VSVS05_00865 PF00486 Transcriptional regulatory protein, C terminal VSVS05_00865 PF00072 Response regulator receiver domain VSVS05_00866 PF00535 Glycosyl transferase family 2 VSVS05_00867 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase VSVS05_00869 PF00440 Bacterial regulatory proteins, tetR family VSVS05_00870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VSVS05_00870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VSVS05_00870 PF09317 Domain of unknown function (DUF1974) VSVS05_00871 PF12241 Trans-2-enoyl-CoA reductase catalytic region VSVS05_00871 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VSVS05_00871 PF07055 Enoyl reductase FAD binding domain VSVS05_00873 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VSVS05_00873 PF00529 HlyD membrane-fusion protein of T1SS VSVS05_00874 PF00005 ABC transporter VSVS05_00874 PF00664 ABC transporter transmembrane region VSVS05_00875 PF03372 Endonuclease/Exonuclease/phosphatase family VSVS05_00876 PF08007 Cupin superfamily protein VSVS05_00877 PF10689 Protein of unknown function (DUF2496) VSVS05_00878 PF07445 Primosomal replication protein priC VSVS05_00879 PF01925 Sulfite exporter TauE/SafE VSVS05_00880 PF13307 Helicase C-terminal domain VSVS05_00880 PF06733 DEAD_2 VSVS05_00882 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VSVS05_00883 PF00202 Aminotransferase class-III VSVS05_00884 PF04055 Radical SAM superfamily VSVS05_00884 PF06968 Biotin and Thiamin Synthesis associated domain VSVS05_00885 PF00155 Aminotransferase class I and II VSVS05_00886 PF08241 Methyltransferase domain VSVS05_00889 PF01435 Peptidase family M48 VSVS05_00899 PF08328 Adenylosuccinate lyase C-terminal VSVS05_00899 PF00206 Lyase VSVS05_00900 PF04356 Protein of unknown function (DUF489) VSVS05_00903 PF00294 pfkB family carbohydrate kinase VSVS05_00904 PF00816 H-NS histone family VSVS05_00905 PF03553 Na+/H+ antiporter family VSVS05_00906 PF01634 ATP phosphoribosyltransferase VSVS05_00906 PF08029 HisG, C-terminal domain VSVS05_00907 PF00815 Histidinol dehydrogenase VSVS05_00908 PF00155 Aminotransferase class I and II VSVS05_00909 PF00475 Imidazoleglycerol-phosphate dehydratase VSVS05_00909 PF08645 Polynucleotide kinase 3 phosphatase VSVS05_00910 PF00117 Glutamine amidotransferase class-I VSVS05_00911 PF00977 Histidine biosynthesis protein VSVS05_00912 PF00977 Histidine biosynthesis protein VSVS05_00913 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VSVS05_00913 PF01502 Phosphoribosyl-AMP cyclohydrolase VSVS05_00915 PF02833 DHHA2 domain VSVS05_00915 PF01368 DHH family VSVS05_00916 PF00005 ABC transporter VSVS05_00917 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VSVS05_00917 PF00005 ABC transporter VSVS05_00918 PF12911 N-terminal TM domain of oligopeptide transport permease C VSVS05_00918 PF00528 Binding-protein-dependent transport system inner membrane component VSVS05_00919 PF00528 Binding-protein-dependent transport system inner membrane component VSVS05_00920 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VSVS05_00921 PF00158 Sigma-54 interaction domain VSVS05_00921 PF02954 Bacterial regulatory protein, Fis family VSVS05_00922 PF04012 PspA/IM30 family VSVS05_00923 PF06667 Phage shock protein B VSVS05_00926 PF13533 Biotin-lipoyl like VSVS05_00927 PF00873 AcrB/AcrD/AcrF family VSVS05_00928 PF03352 Methyladenine glycosylase VSVS05_00929 PF01053 Cys/Met metabolism PLP-dependent enzyme VSVS05_00930 PF13091 PLD-like domain VSVS05_00930 PF13396 Phospholipase_D-nuclease N-terminal VSVS05_00931 PF00209 Sodium:neurotransmitter symporter family VSVS05_00932 PF12729 Four helix bundle sensory module for signal transduction VSVS05_00932 PF00672 HAMP domain VSVS05_00932 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS05_00933 PF00849 RNA pseudouridylate synthase VSVS05_00936 PF01066 CDP-alcohol phosphatidyltransferase VSVS05_00937 PF00005 ABC transporter VSVS05_00938 PF00528 Binding-protein-dependent transport system inner membrane component VSVS05_00939 PF13416 Bacterial extracellular solute-binding protein VSVS05_00941 PF06945 Protein of unknown function (DUF1289) VSVS05_00945 PF03795 YCII-related domain VSVS05_00946 PF03061 Thioesterase superfamily VSVS05_00947 PF04279 Intracellular septation protein A VSVS05_00949 PF00072 Response regulator receiver domain VSVS05_00949 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_00951 PF04269 Protein of unknown function, DUF440 VSVS05_00952 PF01132 Elongation factor P (EF-P) OB domain VSVS05_00952 PF08207 Elongation factor P (EF-P) KOW-like domain VSVS05_00952 PF09285 Elongation factor P, C-terminal VSVS05_00954 PF02378 Phosphotransferase system, EIIC VSVS05_00955 PF03104 DNA polymerase family B, exonuclease domain VSVS05_00955 PF00136 DNA polymerase family B VSVS05_00958 PF00072 Response regulator receiver domain VSVS05_00958 PF00196 Bacterial regulatory proteins, luxR family VSVS05_00959 PF08459 UvrC Helix-hairpin-helix N-terminal VSVS05_00959 PF02151 UvrB/uvrC motif VSVS05_00959 PF01541 GIY-YIG catalytic domain VSVS05_00960 PF01066 CDP-alcohol phosphatidyltransferase VSVS05_00966 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_00969 PF17131 Outer membrane lipoprotein-sorting protein VSVS05_00971 PF00072 Response regulator receiver domain VSVS05_00971 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_00972 PF00583 Acetyltransferase (GNAT) family VSVS05_00974 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VSVS05_00974 PF01409 tRNA synthetases class II core domain (F) VSVS05_00975 PF01588 Putative tRNA binding domain VSVS05_00975 PF03483 B3/4 domain VSVS05_00975 PF03484 tRNA synthetase B5 domain VSVS05_00975 PF03147 Ferredoxin-fold anticodon binding domain VSVS05_00975 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain VSVS05_00978 PF01554 MatE VSVS05_00979 PF03466 LysR substrate binding domain VSVS05_00979 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_00981 PF13302 Acetyltransferase (GNAT) domain VSVS05_00982 PF12464 Maltose acetyltransferase VSVS05_00982 PF00132 Bacterial transferase hexapeptide (six repeats) VSVS05_00983 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS05_00983 PF00672 HAMP domain VSVS05_00983 PF02743 Cache domain VSVS05_00984 PF07702 UTRA domain VSVS05_00984 PF00392 Bacterial regulatory proteins, gntR family VSVS05_00987 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS05_00988 PF00375 Sodium:dicarboxylate symporter family VSVS05_00990 PF00581 Rhodanese-like domain VSVS05_00992 PF00672 HAMP domain VSVS05_00992 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS05_00992 PF02743 Cache domain VSVS05_00994 PF00271 Helicase conserved C-terminal domain VSVS05_00994 PF00270 DEAD/DEAH box helicase VSVS05_00997 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_00997 PF03466 LysR substrate binding domain VSVS05_00999 PF00171 Aldehyde dehydrogenase family VSVS05_01002 PF02028 BCCT, betaine/carnitine/choline family transporter VSVS05_01016 PF00561 alpha/beta hydrolase fold VSVS05_01019 PF01734 Patatin-like phospholipase VSVS05_01022 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 VSVS05_01022 PF00703 Glycosyl hydrolases family 2 VSVS05_01022 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VSVS05_01022 PF02837 Glycosyl hydrolases family 2, sugar binding domain VSVS05_01026 PF01693 Caulimovirus viroplasmin VSVS05_01031 PF00849 RNA pseudouridylate synthase VSVS05_01031 PF01479 S4 domain VSVS05_01032 PF01380 SIS domain VSVS05_01033 PF00367 phosphotransferase system, EIIB VSVS05_01033 PF02378 Phosphotransferase system, EIIC VSVS05_01034 PF01380 SIS domain VSVS05_01034 PF01418 Helix-turn-helix domain, rpiR family VSVS05_01035 PF02656 Domain of unknown function (DUF202) VSVS05_01040 PF00753 Metallo-beta-lactamase superfamily VSVS05_01040 PF14863 Alkyl sulfatase dimerisation VSVS05_01040 PF14864 Alkyl sulfatase C-terminal VSVS05_01042 PF01844 HNH endonuclease VSVS05_01044 PF04261 Dyp-type peroxidase family VSVS05_01046 PF07859 alpha/beta hydrolase fold VSVS05_01048 PF12241 Trans-2-enoyl-CoA reductase catalytic region VSVS05_01048 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VSVS05_01048 PF07055 Enoyl reductase FAD binding domain VSVS05_01049 PF01575 MaoC like domain VSVS05_01050 PF01144 Coenzyme A transferase VSVS05_01051 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_01051 PF03466 LysR substrate binding domain VSVS05_01053 PF02803 Thiolase, C-terminal domain VSVS05_01053 PF00108 Thiolase, N-terminal domain VSVS05_01054 PF00226 DnaJ domain VSVS05_01054 PF00684 DnaJ central domain VSVS05_01054 PF01556 DnaJ C terminal domain VSVS05_01055 PF00012 Hsp70 protein VSVS05_01056 PF00011 Hsp20/alpha crystallin family VSVS05_01057 PF16360 GTP-binding GTPase Middle Region VSVS05_01057 PF01926 50S ribosome-binding GTPase VSVS05_01057 PF13167 GTP-binding GTPase N-terminal VSVS05_01058 PF00873 AcrB/AcrD/AcrF family VSVS05_01060 PF03773 Predicted permease VSVS05_01062 PF13006 Insertion element 4 transposase N-terminal VSVS05_01062 PF01609 Transposase DDE domain VSVS05_01064 PF01048 Phosphorylase superfamily VSVS05_01066 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VSVS05_01066 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region VSVS05_01066 PF01568 Molydopterin dinucleotide binding domain VSVS05_01066 PF12838 4Fe-4S dicluster domain VSVS05_01066 PF00384 Molybdopterin oxidoreductase VSVS05_01071 PF01425 Amidase VSVS05_01073 PF12833 Helix-turn-helix domain VSVS05_01073 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term VSVS05_01074 PF00704 Glycosyl hydrolases family 18 VSVS05_01074 PF06483 Chitinase C VSVS05_01075 PF13808 DDE_Tnp_1-associated VSVS05_01075 PF01609 Transposase DDE domain VSVS05_01076 PF13649 Methyltransferase domain VSVS05_01079 PF01381 Helix-turn-helix VSVS05_01080 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) VSVS05_01083 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_01083 PF05231 MASE1 VSVS05_01083 PF08447 PAS fold VSVS05_01083 PF08448 PAS fold VSVS05_01083 PF13426 PAS domain VSVS05_01083 PF00563 EAL domain VSVS05_01090 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VSVS05_01090 PF01464 Transglycosylase SLT domain VSVS05_01092 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS05_01092 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VSVS05_01097 PF00672 HAMP domain VSVS05_01097 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS05_01097 PF17200 Single Cache domain 2 VSVS05_01098 PF00041 Fibronectin type III domain VSVS05_01098 PF00704 Glycosyl hydrolases family 18 VSVS05_01101 PF01979 Amidohydrolase family VSVS05_01103 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VSVS05_01107 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VSVS05_01108 PF01810 LysE type translocator VSVS05_01109 PF01235 Sodium:alanine symporter family VSVS05_01115 PF00497 Bacterial extracellular solute-binding proteins, family 3 VSVS05_01115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_01115 PF00512 His Kinase A (phospho-acceptor) domain VSVS05_01117 PF00266 Aminotransferase class-V VSVS05_01118 PF08497 Radical SAM N-terminal VSVS05_01118 PF11842 Domain of unknown function (DUF3362) VSVS05_01118 PF04055 Radical SAM superfamily VSVS05_01122 PF03466 LysR substrate binding domain VSVS05_01122 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_01123 PF01717 Cobalamin-independent synthase, Catalytic domain VSVS05_01123 PF08267 Cobalamin-independent synthase, N-terminal domain VSVS05_01124 PF02080 TrkA-C domain VSVS05_01124 PF06826 Predicted Permease Membrane Region VSVS05_01125 PF00462 Glutaredoxin VSVS05_01141 PF05840 Bacteriophage replication gene A protein (GPA) VSVS05_01155 PF00959 Phage lysozyme VSVS05_01165 PF04984 Phage tail sheath protein subtilisin-like domain VSVS05_01165 PF17482 Phage tail sheath C-terminal domain VSVS05_01170 PF00465 Iron-containing alcohol dehydrogenase VSVS05_01170 PF00171 Aldehyde dehydrogenase family VSVS05_01171 PF01418 Helix-turn-helix domain, rpiR family VSVS05_01171 PF01380 SIS domain VSVS05_01172 PF00282 Pyridoxal-dependent decarboxylase conserved domain VSVS05_01174 PF03956 Lysine exporter LysO VSVS05_01175 PF03956 Lysine exporter LysO VSVS05_01177 PF04994 TfoX C-terminal domain VSVS05_01177 PF04993 TfoX N-terminal domain VSVS05_01181 PF00873 AcrB/AcrD/AcrF family VSVS05_01186 PF07687 Peptidase dimerisation domain VSVS05_01186 PF01546 Peptidase family M20/M25/M40 VSVS05_01187 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VSVS05_01188 PF04209 homogentisate 1,2-dioxygenase VSVS05_01189 PF04209 homogentisate 1,2-dioxygenase VSVS05_01191 PF14497 Glutathione S-transferase, C-terminal domain VSVS05_01191 PF02798 Glutathione S-transferase, N-terminal domain VSVS05_01194 PF00691 OmpA family VSVS05_01197 PF01565 FAD binding domain VSVS05_01197 PF02913 FAD linked oxidases, C-terminal domain VSVS05_01197 PF13183 4Fe-4S dicluster domain VSVS05_01198 PF04191 Phospholipid methyltransferase VSVS05_01199 PF00528 Binding-protein-dependent transport system inner membrane component VSVS05_01200 PF00528 Binding-protein-dependent transport system inner membrane component VSVS05_01201 PF00497 Bacterial extracellular solute-binding proteins, family 3 VSVS05_01202 PF00005 ABC transporter VSVS05_01206 PF00221 Aromatic amino acid lyase VSVS05_01207 PF17391 Urocanase N-terminal domain VSVS05_01207 PF01175 Urocanase Rossmann-like domain VSVS05_01207 PF17392 Urocanase C-terminal domain VSVS05_01208 PF00491 Arginase family VSVS05_01209 PF01979 Amidohydrolase family VSVS05_01210 PF00392 Bacterial regulatory proteins, gntR family VSVS05_01210 PF07702 UTRA domain VSVS05_01211 PF07070 SpoOM protein VSVS05_01214 PF05724 Thiopurine S-methyltransferase (TPMT) VSVS05_01215 PF02222 ATP-grasp domain VSVS05_01216 PF00939 Sodium:sulfate symporter transmembrane region VSVS05_01217 PF00512 His Kinase A (phospho-acceptor) domain VSVS05_01217 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_01217 PF00497 Bacterial extracellular solute-binding proteins, family 3 VSVS05_01218 PF02954 Bacterial regulatory protein, Fis family VSVS05_01218 PF00158 Sigma-54 interaction domain VSVS05_01218 PF00072 Response regulator receiver domain VSVS05_01219 PF11871 Domain of unknown function (DUF3391) VSVS05_01219 PF01966 HD domain VSVS05_01221 PF04172 LrgB-like family VSVS05_01222 PF03788 LrgA family VSVS05_01223 PF08411 Exonuclease C-terminal VSVS05_01223 PF00929 Exonuclease VSVS05_01224 PF01042 Endoribonuclease L-PSP VSVS05_01225 PF00144 Beta-lactamase VSVS05_01226 PF13460 NAD(P)H-binding VSVS05_01227 PF01613 Flavin reductase like domain VSVS05_01229 PF02654 Cobalamin-5-phosphate synthase VSVS05_01230 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase VSVS05_01233 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VSVS05_01234 PF01032 FecCD transport family VSVS05_01235 PF00005 ABC transporter VSVS05_01239 PF07690 Major Facilitator Superfamily VSVS05_01240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_01240 PF03466 LysR substrate binding domain VSVS05_01241 PF01566 Natural resistance-associated macrophage protein VSVS05_01242 PF00491 Arginase family VSVS05_01244 PF01863 Protein of unknown function DUF45 VSVS05_01245 PF05971 RNA methyltransferase VSVS05_01252 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VSVS05_01259 PF17200 Single Cache domain 2 VSVS05_01259 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS05_01259 PF00672 HAMP domain VSVS05_01260 PF04055 Radical SAM superfamily VSVS05_01261 PF06508 Queuosine biosynthesis protein QueC VSVS05_01262 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_01262 PF17151 Periplasmic sensor domain VSVS05_01264 PF05736 OprF membrane domain VSVS05_01264 PF00691 OmpA family VSVS05_01268 PF10672 S-adenosylmethionine-dependent methyltransferase VSVS05_01268 PF17785 PUA-like domain VSVS05_01269 PF10672 S-adenosylmethionine-dependent methyltransferase VSVS05_01269 PF17785 PUA-like domain VSVS05_01270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS05_01270 PF00672 HAMP domain VSVS05_01271 PF00708 Acylphosphatase VSVS05_01272 PF04358 DsrC like protein VSVS05_01273 PF01027 Inhibitor of apoptosis-promoting Bax1 VSVS05_01274 PF00005 ABC transporter VSVS05_01275 PF00528 Binding-protein-dependent transport system inner membrane component VSVS05_01276 PF00528 Binding-protein-dependent transport system inner membrane component VSVS05_01277 PF00497 Bacterial extracellular solute-binding proteins, family 3 VSVS05_01278 PF14824 Sirohaem biosynthesis protein central VSVS05_01278 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VSVS05_01278 PF10414 Sirohaem synthase dimerisation region VSVS05_01279 PF04461 Protein of unknown function (DUF520) VSVS05_01280 PF00793 DAHP synthetase I family VSVS05_01285 PF02470 MlaD protein VSVS05_01286 PF02470 MlaD protein VSVS05_01287 PF04403 Paraquat-inducible protein A VSVS05_01288 PF00005 ABC transporter VSVS05_01288 PF00664 ABC transporter transmembrane region VSVS05_01289 PF13185 GAF domain VSVS05_01290 PF04352 ProQ/FINO family VSVS05_01290 PF17516 ProQ C-terminal domain VSVS05_01291 PF11818 C-terminal domain of tail specific protease (DUF3340) VSVS05_01291 PF17804 Tail specific protease N-terminal domain VSVS05_01291 PF03572 Peptidase family S41 VSVS05_01291 PF00595 PDZ domain VSVS05_01293 PF11940 Domain of unknown function (DUF3458) Ig-like fold VSVS05_01293 PF17432 Domain of unknown function (DUF3458_C) ARM repeats VSVS05_01293 PF01433 Peptidase family M1 domain VSVS05_01295 PF05088 Bacterial NAD-glutamate dehydrogenase VSVS05_01296 PF01180 Dihydroorotate dehydrogenase VSVS05_01297 PF07126 Cell-division protein ZapC VSVS05_01298 PF10672 S-adenosylmethionine-dependent methyltransferase VSVS05_01298 PF01170 Putative RNA methylase family UPF0020 VSVS05_01298 PF02926 THUMP domain VSVS05_01300 PF12848 ABC transporter VSVS05_01300 PF16326 ABC transporter C-terminal domain VSVS05_01300 PF00005 ABC transporter VSVS05_01302 PF04957 Ribosome modulation factor VSVS05_01303 PF07977 FabA-like domain VSVS05_01304 PF13654 AAA domain VSVS05_01304 PF05362 Lon protease (S16) C-terminal proteolytic domain VSVS05_01305 PF17414 MatP C-terminal ribbon-helix-helix domain VSVS05_01305 PF06303 MatP N-terminal domain VSVS05_01308 PF00115 Cytochrome C and Quinol oxidase polypeptide I VSVS05_01311 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP VSVS05_01311 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VSVS05_01313 PF00403 Heavy-metal-associated domain VSVS05_01316 PF13545 Crp-like helix-turn-helix domain VSVS05_01316 PF00027 Cyclic nucleotide-binding domain VSVS05_01317 PF00582 Universal stress protein family VSVS05_01318 PF01171 PP-loop family VSVS05_01322 PF08402 TOBE domain VSVS05_01322 PF00005 ABC transporter VSVS05_01323 PF00528 Binding-protein-dependent transport system inner membrane component VSVS05_01324 PF00528 Binding-protein-dependent transport system inner membrane component VSVS05_01325 PF13416 Bacterial extracellular solute-binding protein VSVS05_01326 PF13416 Bacterial extracellular solute-binding protein VSVS05_01327 PF02146 Sir2 family VSVS05_01329 PF00909 Ammonium Transporter Family VSVS05_01332 PF13247 4Fe-4S dicluster domain VSVS05_01333 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VSVS05_01333 PF01568 Molydopterin dinucleotide binding domain VSVS05_01333 PF00384 Molybdopterin oxidoreductase VSVS05_01339 PF02634 FdhD/NarQ family VSVS05_01340 PF02743 Cache domain VSVS05_01340 PF00672 HAMP domain VSVS05_01340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS05_01341 PF12848 ABC transporter VSVS05_01341 PF00005 ABC transporter VSVS05_01344 PF12561 ToxR activated gene A lipoprotein domain VSVS05_01344 PF17945 Beta/Gamma crystallin VSVS05_01345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_01345 PF00512 His Kinase A (phospho-acceptor) domain VSVS05_01346 PF00072 Response regulator receiver domain VSVS05_01346 PF00158 Sigma-54 interaction domain VSVS05_01346 PF02954 Bacterial regulatory protein, Fis family VSVS05_01347 PF12849 PBP superfamily domain VSVS05_01348 PF00528 Binding-protein-dependent transport system inner membrane component VSVS05_01349 PF00005 ABC transporter VSVS05_01350 PF12804 MobA-like NTP transferase domain VSVS05_01351 PF03454 MoeA C-terminal region (domain IV) VSVS05_01351 PF00994 Probable molybdopterin binding domain VSVS05_01351 PF03453 MoeA N-terminal region (domain I and II) VSVS05_01353 PF00480 ROK family VSVS05_01356 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS05_01356 PF00672 HAMP domain VSVS05_01357 PF00877 NlpC/P60 family VSVS05_01361 PF00677 Lumazine binding domain VSVS05_01362 PF01554 MatE VSVS05_01363 PF01554 MatE VSVS05_01366 PF01810 LysE type translocator VSVS05_01372 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_01372 PF03466 LysR substrate binding domain VSVS05_01381 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_01381 PF03466 LysR substrate binding domain VSVS05_01385 PF00367 phosphotransferase system, EIIB VSVS05_01385 PF02378 Phosphotransferase system, EIIC VSVS05_01386 PF13580 SIS domain VSVS05_01387 PF01380 SIS domain VSVS05_01387 PF01418 Helix-turn-helix domain, rpiR family VSVS05_01388 PF01068 ATP dependent DNA ligase domain VSVS05_01388 PF14743 DNA ligase OB-like domain VSVS05_01393 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_01393 PF00512 His Kinase A (phospho-acceptor) domain VSVS05_01393 PF00072 Response regulator receiver domain VSVS05_01393 PF01627 Hpt domain VSVS05_01393 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VSVS05_01393 PF00672 HAMP domain VSVS05_01394 PF00158 Sigma-54 interaction domain VSVS05_01394 PF00072 Response regulator receiver domain VSVS05_01394 PF02954 Bacterial regulatory protein, Fis family VSVS05_01396 PF13439 Glycosyltransferase Family 4 VSVS05_01396 PF00534 Glycosyl transferases group 1 VSVS05_01404 PF13439 Glycosyltransferase Family 4 VSVS05_01404 PF00534 Glycosyl transferases group 1 VSVS05_01406 PF02397 Bacterial sugar transferase VSVS05_01409 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_01409 PF08448 PAS fold VSVS05_01410 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) VSVS05_01411 PF00480 ROK family VSVS05_01412 PF03707 Bacterial signalling protein N terminal repeat VSVS05_01412 PF00563 EAL domain VSVS05_01412 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_01414 PF17151 Periplasmic sensor domain VSVS05_01414 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_01416 PF00005 ABC transporter VSVS05_01417 PF00528 Binding-protein-dependent transport system inner membrane component VSVS05_01418 PF00497 Bacterial extracellular solute-binding proteins, family 3 VSVS05_01419 PF00528 Binding-protein-dependent transport system inner membrane component VSVS05_01422 PF02472 Biopolymer transport protein ExbD/TolR VSVS05_01423 PF01618 MotA/TolQ/ExbB proton channel family VSVS05_01424 PF01618 MotA/TolQ/ExbB proton channel family VSVS05_01426 PF07715 TonB-dependent Receptor Plug Domain VSVS05_01426 PF00593 TonB dependent receptor VSVS05_01427 PF00512 His Kinase A (phospho-acceptor) domain VSVS05_01427 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_01427 PF16527 Two-component sensor protein CpxA, periplasmic domain VSVS05_01427 PF00672 HAMP domain VSVS05_01428 PF00072 Response regulator receiver domain VSVS05_01428 PF00486 Transcriptional regulatory protein, C terminal VSVS05_01430 PF16868 NMT1-like family VSVS05_01431 PF03009 Glycerophosphoryl diester phosphodiesterase family VSVS05_01433 PF01259 SAICAR synthetase VSVS05_01435 PF04055 Radical SAM superfamily VSVS05_01436 PF11230 Protein of unknown function (DUF3029) VSVS05_01437 PF17200 Single Cache domain 2 VSVS05_01437 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS05_01437 PF00672 HAMP domain VSVS05_01438 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS05_01438 PF00672 HAMP domain VSVS05_01438 PF02743 Cache domain VSVS05_01440 PF01810 LysE type translocator VSVS05_01441 PF00521 DNA gyrase/topoisomerase IV, subunit A VSVS05_01441 PF03989 DNA gyrase C-terminal domain, beta-propeller VSVS05_01443 PF00317 Ribonucleotide reductase, all-alpha domain VSVS05_01443 PF02867 Ribonucleotide reductase, barrel domain VSVS05_01443 PF03477 ATP cone domain VSVS05_01444 PF00268 Ribonucleotide reductase, small chain VSVS05_01445 PF00111 2Fe-2S iron-sulfur cluster binding domain VSVS05_01447 PF00994 Probable molybdopterin binding domain VSVS05_01450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS05_01450 PF00672 HAMP domain VSVS05_01450 PF17200 Single Cache domain 2 VSVS05_01451 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VSVS05_01453 PF03435 Saccharopine dehydrogenase NADP binding domain VSVS05_01453 PF16653 Saccharopine dehydrogenase C-terminal domain VSVS05_01454 PF00202 Aminotransferase class-III VSVS05_01456 PF00691 OmpA family VSVS05_01457 PF06965 Na+/H+ antiporter 1 VSVS05_01460 PF00005 ABC transporter VSVS05_01461 PF01554 MatE VSVS05_01462 PF11066 Protein of unknown function (DUF2867) VSVS05_01462 PF13460 NAD(P)H-binding VSVS05_01463 PF08448 PAS fold VSVS05_01463 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_01463 PF00563 EAL domain VSVS05_01464 PF01235 Sodium:alanine symporter family VSVS05_01467 PF13006 Insertion element 4 transposase N-terminal VSVS05_01467 PF01609 Transposase DDE domain VSVS05_01469 PF07690 Major Facilitator Superfamily VSVS05_01470 PF00849 RNA pseudouridylate synthase VSVS05_01470 PF01479 S4 domain VSVS05_01471 PF04851 Type III restriction enzyme, res subunit VSVS05_01471 PF00271 Helicase conserved C-terminal domain VSVS05_01473 PF00486 Transcriptional regulatory protein, C terminal VSVS05_01473 PF00072 Response regulator receiver domain VSVS05_01474 PF00512 His Kinase A (phospho-acceptor) domain VSVS05_01474 PF00672 HAMP domain VSVS05_01474 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_01475 PF07690 Major Facilitator Superfamily VSVS05_01476 PF12833 Helix-turn-helix domain VSVS05_01477 PF09335 SNARE associated Golgi protein VSVS05_01478 PF00535 Glycosyl transferase family 2 VSVS05_01478 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 VSVS05_01479 PF01386 Ribosomal L25p family VSVS05_01483 PF00563 EAL domain VSVS05_01483 PF03707 Bacterial signalling protein N terminal repeat VSVS05_01483 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_01484 PF00210 Ferritin-like domain VSVS05_01486 PF00356 Bacterial regulatory proteins, lacI family VSVS05_01487 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VSVS05_01488 PF02378 Phosphotransferase system, EIIC VSVS05_01489 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit VSVS05_01491 PF00196 Bacterial regulatory proteins, luxR family VSVS05_01491 PF00072 Response regulator receiver domain VSVS05_01492 PF17200 Single Cache domain 2 VSVS05_01492 PF07730 Histidine kinase VSVS05_01493 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VSVS05_01495 PF03480 Bacterial extracellular solute-binding protein, family 7 VSVS05_01498 PF00753 Metallo-beta-lactamase superfamily VSVS05_01499 PF05951 Bacterial protein of unknown function (DUF882) VSVS05_01500 PF01471 Putative peptidoglycan binding domain VSVS05_01500 PF03734 L,D-transpeptidase catalytic domain VSVS05_01506 PF00925 GTP cyclohydrolase II VSVS05_01510 PF13302 Acetyltransferase (GNAT) domain VSVS05_01511 PF18024 Helix-turn-helix domain VSVS05_01511 PF00158 Sigma-54 interaction domain VSVS05_01512 PF05128 Domain of unknown function (DUF697) VSVS05_01513 PF04317 YcjX-like family, DUF463 VSVS05_01517 PF00425 chorismate binding enzyme VSVS05_01517 PF04715 Anthranilate synthase component I, N terminal region VSVS05_01518 PF00512 His Kinase A (phospho-acceptor) domain VSVS05_01518 PF00072 Response regulator receiver domain VSVS05_01518 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_01518 PF09308 LuxQ, periplasmic VSVS05_01520 PF00293 NUDIX domain VSVS05_01521 PF03222 Tryptophan/tyrosine permease family VSVS05_01522 PF03313 Serine dehydratase alpha chain VSVS05_01522 PF03315 Serine dehydratase beta chain VSVS05_01524 PF01242 6-pyruvoyl tetrahydropterin synthase VSVS05_01525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS05_01525 PF17200 Single Cache domain 2 VSVS05_01525 PF00672 HAMP domain VSVS05_01527 PF00152 tRNA synthetases class II (D, K and N) VSVS05_01527 PF01336 OB-fold nucleic acid binding domain VSVS05_01531 PF00155 Aminotransferase class I and II VSVS05_01534 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VSVS05_01534 PF00271 Helicase conserved C-terminal domain VSVS05_01534 PF04408 Helicase associated domain (HA2) VSVS05_01534 PF11898 Domain of unknown function (DUF3418) VSVS05_01534 PF00270 DEAD/DEAH box helicase VSVS05_01535 PF00390 Malic enzyme, N-terminal domain VSVS05_01535 PF03949 Malic enzyme, NAD binding domain VSVS05_01537 PF02698 DUF218 domain VSVS05_01538 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_01538 PF00072 Response regulator receiver domain VSVS05_01540 PF00266 Aminotransferase class-V VSVS05_01542 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS05_01543 PF00005 ABC transporter VSVS05_01543 PF00664 ABC transporter transmembrane region VSVS05_01544 PF00664 ABC transporter transmembrane region VSVS05_01544 PF00005 ABC transporter VSVS05_01545 PF00557 Metallopeptidase family M24 VSVS05_01545 PF01321 Creatinase/Prolidase N-terminal domain VSVS05_01546 PF01037 Lrp/AsnC ligand binding domain VSVS05_01547 PF00171 Aldehyde dehydrogenase family VSVS05_01548 PF00202 Aminotransferase class-III VSVS05_01549 PF01641 SelR domain VSVS05_01549 PF01625 Peptide methionine sulfoxide reductase VSVS05_01553 PF00270 DEAD/DEAH box helicase VSVS05_01553 PF00271 Helicase conserved C-terminal domain VSVS05_01566 PF00588 SpoU rRNA Methylase family VSVS05_01566 PF08032 RNA 2'-O ribose methyltransferase substrate binding VSVS05_01567 PF11953 Domain of unknown function (DUF3470) VSVS05_01567 PF00037 4Fe-4S binding domain VSVS05_01571 PF01327 Polypeptide deformylase VSVS05_01574 PF00072 Response regulator receiver domain VSVS05_01575 PF00072 Response regulator receiver domain VSVS05_01576 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_01576 PF00072 Response regulator receiver domain VSVS05_01576 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VSVS05_01576 PF01627 Hpt domain VSVS05_01576 PF00512 His Kinase A (phospho-acceptor) domain VSVS05_01576 PF00672 HAMP domain VSVS05_01577 PF00849 RNA pseudouridylate synthase VSVS05_01577 PF01479 S4 domain VSVS05_01578 PF01300 Telomere recombination VSVS05_01579 PF02811 PHP domain VSVS05_01580 PF04715 Anthranilate synthase component I, N terminal region VSVS05_01580 PF00425 chorismate binding enzyme VSVS05_01581 PF00117 Glutamine amidotransferase class-I VSVS05_01582 PF00591 Glycosyl transferase family, a/b domain VSVS05_01582 PF02885 Glycosyl transferase family, helical bundle domain VSVS05_01583 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VSVS05_01583 PF00218 Indole-3-glycerol phosphate synthase VSVS05_01584 PF00291 Pyridoxal-phosphate dependent enzyme VSVS05_01585 PF00290 Tryptophan synthase alpha chain VSVS05_01586 PF00375 Sodium:dicarboxylate symporter family VSVS05_01589 PF00270 DEAD/DEAH box helicase VSVS05_01589 PF11898 Domain of unknown function (DUF3418) VSVS05_01589 PF04408 Helicase associated domain (HA2) VSVS05_01589 PF00271 Helicase conserved C-terminal domain VSVS05_01589 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VSVS05_01596 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_01596 PF08448 PAS fold VSVS05_01598 PF00012 Hsp70 protein VSVS05_01599 PF00012 Hsp70 protein VSVS05_01601 PF01323 DSBA-like thioredoxin domain VSVS05_01608 PF00005 ABC transporter VSVS05_01609 PF12704 MacB-like periplasmic core domain VSVS05_01609 PF02687 FtsX-like permease family VSVS05_01612 PF06580 Histidine kinase VSVS05_01612 PF07694 5TMR of 5TMR-LYT VSVS05_01612 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_01612 PF13492 GAF domain VSVS05_01613 PF04397 LytTr DNA-binding domain VSVS05_01613 PF00072 Response regulator receiver domain VSVS05_01614 PF00528 Binding-protein-dependent transport system inner membrane component VSVS05_01615 PF00528 Binding-protein-dependent transport system inner membrane component VSVS05_01616 PF00497 Bacterial extracellular solute-binding proteins, family 3 VSVS05_01617 PF00005 ABC transporter VSVS05_01619 PF02901 Pyruvate formate lyase-like VSVS05_01619 PF01228 Glycine radical VSVS05_01621 PF04055 Radical SAM superfamily VSVS05_01622 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family VSVS05_01625 PF06629 MltA-interacting protein MipA VSVS05_01626 PF06798 PrkA serine protein kinase C-terminal domain VSVS05_01626 PF08298 PrkA AAA domain VSVS05_01627 PF04285 Protein of unknown function (DUF444) VSVS05_01628 PF04293 SpoVR like protein VSVS05_01629 PF02348 Cytidylyltransferase VSVS05_01630 PF03966 Trm112p-like protein VSVS05_01631 PF02606 Tetraacyldisaccharide-1-P 4'-kinase VSVS05_01632 PF00005 ABC transporter VSVS05_01632 PF00664 ABC transporter transmembrane region VSVS05_01633 PF00753 Metallo-beta-lactamase superfamily VSVS05_01633 PF03772 Competence protein VSVS05_01634 PF03772 Competence protein VSVS05_01634 PF13567 Domain of unknown function (DUF4131) VSVS05_01634 PF00753 Metallo-beta-lactamase superfamily VSVS05_01637 PF12704 MacB-like periplasmic core domain VSVS05_01637 PF02687 FtsX-like permease family VSVS05_01638 PF00005 ABC transporter VSVS05_01639 PF02687 FtsX-like permease family VSVS05_01639 PF12704 MacB-like periplasmic core domain VSVS05_01641 PF00271 Helicase conserved C-terminal domain VSVS05_01641 PF02559 CarD-like/TRCF domain VSVS05_01641 PF03461 TRCF domain VSVS05_01641 PF17757 UvrB interaction domain VSVS05_01641 PF00270 DEAD/DEAH box helicase VSVS05_01644 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS05_01647 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VSVS05_01647 PF13036 Peptidoglycan-synthase activator LpoB VSVS05_01650 PF01230 HIT domain VSVS05_01651 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS05_01651 PF00672 HAMP domain VSVS05_01653 PF01590 GAF domain VSVS05_01653 PF00158 Sigma-54 interaction domain VSVS05_01654 PF03063 Prismane/CO dehydrogenase family VSVS05_01655 PF00175 Oxidoreductase NAD-binding domain VSVS05_01655 PF00111 2Fe-2S iron-sulfur cluster binding domain VSVS05_01655 PF00970 Oxidoreductase FAD-binding domain VSVS05_01656 PF00392 Bacterial regulatory proteins, gntR family VSVS05_01656 PF07840 FadR C-terminal domain VSVS05_01657 PF06450 Bacterial Na+/H+ antiporter B (NhaB) VSVS05_01658 PF02600 Disulfide bond formation protein DsbB VSVS05_01659 PF01580 FtsK/SpoIIIE family VSVS05_01659 PF13491 4TM region of DNA translocase FtsK/SpoIIIE VSVS05_01659 PF09397 Ftsk gamma domain VSVS05_01659 PF17854 FtsK alpha domain VSVS05_01660 PF01037 Lrp/AsnC ligand binding domain VSVS05_01661 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VSVS05_01661 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VSVS05_01662 PF04217 Protein of unknown function, DUF412 VSVS05_01663 PF00871 Acetokinase family VSVS05_01664 PF07085 DRTGG domain VSVS05_01664 PF01515 Phosphate acetyl/butaryl transferase VSVS05_01666 PF04976 DMSO reductase anchor subunit (DmsC) VSVS05_01667 PF13247 4Fe-4S dicluster domain VSVS05_01667 PF12800 4Fe-4S binding domain VSVS05_01668 PF01568 Molydopterin dinucleotide binding domain VSVS05_01668 PF00384 Molybdopterin oxidoreductase VSVS05_01668 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VSVS05_01669 PF02613 Nitrate reductase delta subunit VSVS05_01670 PF00037 4Fe-4S binding domain VSVS05_01670 PF12838 4Fe-4S dicluster domain VSVS05_01671 PF00873 AcrB/AcrD/AcrF family VSVS05_01672 PF13533 Biotin-lipoyl like VSVS05_01679 PF13409 Glutathione S-transferase, N-terminal domain VSVS05_01680 PF00850 Histone deacetylase domain VSVS05_01681 PF13416 Bacterial extracellular solute-binding protein VSVS05_01682 PF00005 ABC transporter VSVS05_01682 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VSVS05_01683 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VSVS05_01683 PF00005 ABC transporter VSVS05_01684 PF12911 N-terminal TM domain of oligopeptide transport permease C VSVS05_01684 PF00528 Binding-protein-dependent transport system inner membrane component VSVS05_01685 PF00528 Binding-protein-dependent transport system inner membrane component VSVS05_01686 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VSVS05_01687 PF00106 short chain dehydrogenase VSVS05_01688 PF03466 LysR substrate binding domain VSVS05_01688 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_01689 PF00072 Response regulator receiver domain VSVS05_01689 PF09308 LuxQ, periplasmic VSVS05_01689 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_01689 PF00512 His Kinase A (phospho-acceptor) domain VSVS05_01690 PF03707 Bacterial signalling protein N terminal repeat VSVS05_01690 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_01690 PF00563 EAL domain VSVS05_01694 PF13402 Peptidase M60, enhancin and enhancin-like VSVS05_01694 PF17291 N-terminal domain of M60-like peptidases VSVS05_01694 PF13322 Domain of unknown function (DUF4092) VSVS05_01696 PF08448 PAS fold VSVS05_01696 PF00563 EAL domain VSVS05_01696 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_01698 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VSVS05_01701 PF01037 Lrp/AsnC ligand binding domain VSVS05_01701 PF13404 AsnC-type helix-turn-helix domain VSVS05_01702 PF00291 Pyridoxal-phosphate dependent enzyme VSVS05_01706 PF07690 Major Facilitator Superfamily VSVS05_01707 PF03601 Conserved hypothetical protein 698 VSVS05_01709 PF03466 LysR substrate binding domain VSVS05_01709 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_01710 PF00367 phosphotransferase system, EIIB VSVS05_01710 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VSVS05_01710 PF02378 Phosphotransferase system, EIIC VSVS05_01711 PF13193 AMP-binding enzyme C-terminal domain VSVS05_01711 PF00501 AMP-binding enzyme VSVS05_01712 PF13378 Enolase C-terminal domain-like VSVS05_01713 PF00378 Enoyl-CoA hydratase/isomerase VSVS05_01714 PF12697 Alpha/beta hydrolase family VSVS05_01715 PF16582 Middle domain of thiamine pyrophosphate VSVS05_01715 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VSVS05_01715 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VSVS05_01716 PF00425 chorismate binding enzyme VSVS05_01717 PF00155 Aminotransferase class I and II VSVS05_01719 PF13286 Phosphohydrolase-associated domain VSVS05_01719 PF01966 HD domain VSVS05_01722 PF00455 DeoR C terminal sensor domain VSVS05_01722 PF08220 DeoR-like helix-turn-helix domain VSVS05_01725 PF00313 'Cold-shock' DNA-binding domain VSVS05_01726 PF08220 DeoR-like helix-turn-helix domain VSVS05_01726 PF00455 DeoR C terminal sensor domain VSVS05_01727 PF08013 Tagatose 6 phosphate kinase VSVS05_01728 PF01380 SIS domain VSVS05_01729 PF03830 PTS system sorbose subfamily IIB component VSVS05_01730 PF03609 PTS system sorbose-specific iic component VSVS05_01731 PF03613 PTS system mannose/fructose/sorbose family IID component VSVS05_01732 PF03610 PTS system fructose IIA component VSVS05_01733 PF01979 Amidohydrolase family VSVS05_01734 PF01116 Fructose-bisphosphate aldolase class-II VSVS05_01735 PF08496 Peptidase family S49 N-terminal VSVS05_01735 PF01343 Peptidase family S49 VSVS05_01736 PF00106 short chain dehydrogenase VSVS05_01739 PF07733 Bacterial DNA polymerase III alpha NTPase domain VSVS05_01739 PF14579 Helix-hairpin-helix motif VSVS05_01739 PF02811 PHP domain VSVS05_01739 PF01336 OB-fold nucleic acid binding domain VSVS05_01739 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VSVS05_01740 PF00072 Response regulator receiver domain VSVS05_01740 PF01584 CheW-like domain VSVS05_01741 PF00480 ROK family VSVS05_01742 PF01734 Patatin-like phospholipase VSVS05_01746 PF00209 Sodium:neurotransmitter symporter family VSVS05_01749 PF02378 Phosphotransferase system, EIIC VSVS05_01749 PF00367 phosphotransferase system, EIIB VSVS05_01751 PF01026 TatD related DNase VSVS05_01752 PF09115 DNA polymerase III, delta subunit, C terminal VSVS05_01753 PF02223 Thymidylate kinase VSVS05_01754 PF02618 YceG-like family VSVS05_01755 PF01063 Amino-transferase class IV VSVS05_01756 PF02801 Beta-ketoacyl synthase, C-terminal domain VSVS05_01756 PF00109 Beta-ketoacyl synthase, N-terminal domain VSVS05_01757 PF00550 Phosphopantetheine attachment site VSVS05_01759 PF00698 Acyl transferase domain VSVS05_01760 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VSVS05_01760 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VSVS05_01761 PF02504 Fatty acid synthesis protein VSVS05_01763 PF02620 Large ribosomal RNA subunit accumulation protein YceD VSVS05_01764 PF02545 Maf-like protein VSVS05_01765 PF01479 S4 domain VSVS05_01765 PF00849 RNA pseudouridylate synthase VSVS05_01766 PF00575 S1 RNA binding domain VSVS05_01766 PF12111 Polyribonucleotide phosphorylase C terminal VSVS05_01766 PF10150 Ribonuclease E/G family VSVS05_01767 PF00916 Sulfate permease family VSVS05_01767 PF01740 STAS domain VSVS05_01768 PF13091 PLD-like domain VSVS05_01770 PF00570 HRDC domain VSVS05_01770 PF01612 3'-5' exonuclease VSVS05_01771 PF00501 AMP-binding enzyme VSVS05_01771 PF13193 AMP-binding enzyme C-terminal domain VSVS05_01772 PF08241 Methyltransferase domain VSVS05_01772 PF12697 Alpha/beta hydrolase family VSVS05_01773 PF03843 Outer membrane lipoprotein Slp family VSVS05_01775 PF00814 Glycoprotease family VSVS05_01776 PF13307 Helicase C-terminal domain VSVS05_01776 PF04851 Type III restriction enzyme, res subunit VSVS05_01778 PF00551 Formyl transferase VSVS05_01778 PF01842 ACT domain VSVS05_01780 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VSVS05_01780 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS05_01781 PF01343 Peptidase family S49 VSVS05_01782 PF00710 Asparaginase, N-terminal VSVS05_01782 PF17763 Glutaminase/Asparaginase C-terminal domain VSVS05_01784 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal VSVS05_01784 PF14602 Hexapeptide repeat of succinyl-transferase VSVS05_01784 PF00132 Bacterial transferase hexapeptide (six repeats) VSVS05_01786 PF02403 Seryl-tRNA synthetase N-terminal domain VSVS05_01786 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VSVS05_01787 PF12002 MgsA AAA+ ATPase C terminal VSVS05_01787 PF16193 AAA C-terminal domain VSVS05_01787 PF00004 ATPase family associated with various cellular activities (AAA) VSVS05_01788 PF03548 Outer membrane lipoprotein carrier protein LolA VSVS05_01789 PF02810 SEC-C motif VSVS05_01789 PF07517 SecA DEAD-like domain VSVS05_01789 PF01043 SecA preprotein cross-linking domain VSVS05_01789 PF07516 SecA Wing and Scaffold domain VSVS05_01791 PF01207 Dihydrouridine synthase (Dus) VSVS05_01792 PF00005 ABC transporter VSVS05_01793 PF02653 Branched-chain amino acid transport system / permease component VSVS05_01796 PF03466 LysR substrate binding domain VSVS05_01796 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_01798 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VSVS05_01799 PF18073 Rubredoxin metal binding domain VSVS05_01800 PF06305 Lipopolysaccharide assembly protein A domain VSVS05_01801 PF00216 Bacterial DNA-binding protein VSVS05_01802 PF00575 S1 RNA binding domain VSVS05_01803 PF02224 Cytidylate kinase VSVS05_01805 PF13145 PPIC-type PPIASE domain VSVS05_01806 PF00216 Bacterial DNA-binding protein VSVS05_01807 PF02190 ATP-dependent protease La (LON) substrate-binding domain VSVS05_01807 PF05362 Lon protease (S16) C-terminal proteolytic domain VSVS05_01807 PF00004 ATPase family associated with various cellular activities (AAA) VSVS05_01808 PF06689 ClpX C4-type zinc finger VSVS05_01808 PF10431 C-terminal, D2-small domain, of ClpB protein VSVS05_01808 PF07724 AAA domain (Cdc48 subfamily) VSVS05_01809 PF00574 Clp protease VSVS05_01810 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VSVS05_01810 PF05698 Bacterial trigger factor protein (TF) C-terminus VSVS05_01810 PF05697 Bacterial trigger factor protein (TF) VSVS05_01811 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_01811 PF00512 His Kinase A (phospho-acceptor) domain VSVS05_01811 PF02743 Cache domain VSVS05_01812 PF00072 Response regulator receiver domain VSVS05_01812 PF00158 Sigma-54 interaction domain VSVS05_01812 PF02954 Bacterial regulatory protein, Fis family VSVS05_01813 PF07715 TonB-dependent Receptor Plug Domain VSVS05_01813 PF00593 TonB dependent receptor VSVS05_01814 PF01243 Pyridoxamine 5'-phosphate oxidase VSVS05_01815 PF06228 Haem utilisation ChuX/HutX VSVS05_01816 PF04055 Radical SAM superfamily VSVS05_01818 PF03544 Gram-negative bacterial TonB protein C-terminal VSVS05_01819 PF01618 MotA/TolQ/ExbB proton channel family VSVS05_01820 PF02472 Biopolymer transport protein ExbD/TolR VSVS05_01822 PF01032 FecCD transport family VSVS05_01823 PF00005 ABC transporter VSVS05_01825 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VSVS05_01826 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VSVS05_01827 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VSVS05_01828 PF03480 Bacterial extracellular solute-binding protein, family 7 VSVS05_01829 PF02696 Uncharacterized ACR, YdiU/UPF0061 family VSVS05_01834 PF02798 Glutathione S-transferase, N-terminal domain VSVS05_01835 PF00012 Hsp70 protein VSVS05_01838 PF01081 KDPG and KHG aldolase VSVS05_01839 PF00294 pfkB family carbohydrate kinase VSVS05_01840 PF10688 Bacterial inner membrane protein VSVS05_01842 PF01614 Bacterial transcriptional regulator VSVS05_01842 PF09339 IclR helix-turn-helix domain VSVS05_01845 PF07470 Glycosyl Hydrolase Family 88 VSVS05_01847 PF03613 PTS system mannose/fructose/sorbose family IID component VSVS05_01848 PF03609 PTS system sorbose-specific iic component VSVS05_01849 PF03830 PTS system sorbose subfamily IIB component VSVS05_01850 PF00455 DeoR C terminal sensor domain VSVS05_01850 PF08220 DeoR-like helix-turn-helix domain VSVS05_01854 PF05343 M42 glutamyl aminopeptidase VSVS05_01855 PF00557 Metallopeptidase family M24 VSVS05_01855 PF01321 Creatinase/Prolidase N-terminal domain VSVS05_01856 PF02378 Phosphotransferase system, EIIC VSVS05_01857 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VSVS05_01858 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit VSVS05_01859 PF00155 Aminotransferase class I and II VSVS05_01861 PF03441 FAD binding domain of DNA photolyase VSVS05_01861 PF00875 DNA photolyase VSVS05_01862 PF04244 Deoxyribodipyrimidine photo-lyase-related protein VSVS05_01867 PF00216 Bacterial DNA-binding protein VSVS05_01872 PF00239 Resolvase, N terminal domain VSVS05_01872 PF02796 Helix-turn-helix domain of resolvase VSVS05_01875 PF10544 T5orf172 domain VSVS05_01880 PF14490 Helix-hairpin-helix containing domain VSVS05_01880 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain VSVS05_01880 PF13538 UvrD-like helicase C-terminal domain VSVS05_01884 PF02899 Phage integrase, N-terminal SAM-like domain VSVS05_01884 PF00589 Phage integrase family VSVS05_01886 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain VSVS05_01886 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain VSVS05_01887 PF07670 Nucleoside recognition VSVS05_01887 PF07662 Na+ dependent nucleoside transporter C-terminus VSVS05_01887 PF01773 Na+ dependent nucleoside transporter N-terminus VSVS05_01888 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_01888 PF03466 LysR substrate binding domain VSVS05_01889 PF13406 Transglycosylase SLT domain VSVS05_01890 PF05166 YcgL domain VSVS05_01891 PF05209 Septum formation inhibitor MinC, N-terminal domain VSVS05_01891 PF03775 Septum formation inhibitor MinC, C-terminal domain VSVS05_01892 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VSVS05_01893 PF03776 Septum formation topological specificity factor MinE VSVS05_01894 PF00465 Iron-containing alcohol dehydrogenase VSVS05_01894 PF00171 Aldehyde dehydrogenase family VSVS05_01895 PF01914 MarC family integral membrane protein VSVS05_01896 PF00027 Cyclic nucleotide-binding domain VSVS05_01896 PF00520 Ion transport protein VSVS05_01898 PF00392 Bacterial regulatory proteins, gntR family VSVS05_01898 PF07729 FCD domain VSVS05_01899 PF02774 Semialdehyde dehydrogenase, dimerisation domain VSVS05_01899 PF01118 Semialdehyde dehydrogenase, NAD binding domain VSVS05_01900 PF03553 Na+/H+ antiporter family VSVS05_01903 PF04245 37-kD nucleoid-associated bacterial protein VSVS05_01904 PF07208 Protein of unknown function (DUF1414) VSVS05_01905 PF11893 Domain of unknown function (DUF3413) VSVS05_01905 PF00884 Sulfatase VSVS05_01908 PF13309 HTH domain VSVS05_01908 PF08348 YheO-like PAS domain VSVS05_01909 PF01042 Endoribonuclease L-PSP VSVS05_01910 PF00375 Sodium:dicarboxylate symporter family VSVS05_01911 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VSVS05_01911 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS05_01912 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) VSVS05_01913 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VSVS05_01915 PF03611 PTS system sugar-specific permease component VSVS05_01916 PF02779 Transketolase, pyrimidine binding domain VSVS05_01916 PF02780 Transketolase, C-terminal domain VSVS05_01916 PF00456 Transketolase, thiamine diphosphate binding domain VSVS05_01917 PF02779 Transketolase, pyrimidine binding domain VSVS05_01917 PF02780 Transketolase, C-terminal domain VSVS05_01918 PF00392 Bacterial regulatory proteins, gntR family VSVS05_01918 PF07702 UTRA domain VSVS05_01920 PF01053 Cys/Met metabolism PLP-dependent enzyme VSVS05_01922 PF17152 Periplasmic sensor domain VSVS05_01922 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_01923 PF00850 Histone deacetylase domain VSVS05_01925 PF01131 DNA topoisomerase VSVS05_01925 PF01751 Toprim domain VSVS05_01926 PF00462 Glutaredoxin VSVS05_01927 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VSVS05_01927 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VSVS05_01930 PF01451 Low molecular weight phosphotyrosine protein phosphatase VSVS05_01931 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VSVS05_01931 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VSVS05_01932 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VSVS05_01932 PF02874 ATP synthase alpha/beta family, beta-barrel domain VSVS05_01933 PF00231 ATP synthase VSVS05_01934 PF00306 ATP synthase alpha/beta chain, C terminal domain VSVS05_01934 PF02874 ATP synthase alpha/beta family, beta-barrel domain VSVS05_01934 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VSVS05_01935 PF00213 ATP synthase delta (OSCP) subunit VSVS05_01936 PF00430 ATP synthase B/B' CF(0) VSVS05_01937 PF00137 ATP synthase subunit C VSVS05_01938 PF00119 ATP synthase A chain VSVS05_01940 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP VSVS05_01941 PF05170 AsmA family VSVS05_01942 PF00485 Phosphoribulokinase / Uridine kinase family VSVS05_01943 PF10609 NUBPL iron-transfer P-loop NTPase VSVS05_01944 PF01588 Putative tRNA binding domain VSVS05_01944 PF09334 tRNA synthetases class I (M) VSVS05_01945 PF01048 Phosphorylase superfamily VSVS05_01946 PF00403 Heavy-metal-associated domain VSVS05_01947 PF01554 MatE VSVS05_01948 PF00571 CBS domain VSVS05_01948 PF00478 IMP dehydrogenase / GMP reductase domain VSVS05_01949 PF02391 MoaE protein VSVS05_01950 PF02597 ThiS family VSVS05_01951 PF01967 MoaC family VSVS05_01952 PF00994 Probable molybdopterin binding domain VSVS05_01953 PF04055 Radical SAM superfamily VSVS05_01953 PF06463 Molybdenum Cofactor Synthesis C VSVS05_01954 PF01933 Uncharacterised protein family UPF0052 VSVS05_01955 PF01627 Hpt domain VSVS05_01956 PF00158 Sigma-54 interaction domain VSVS05_01956 PF00072 Response regulator receiver domain VSVS05_01956 PF02954 Bacterial regulatory protein, Fis family VSVS05_01957 PF00271 Helicase conserved C-terminal domain VSVS05_01957 PF12344 Ultra-violet resistance protein B VSVS05_01957 PF04851 Type III restriction enzyme, res subunit VSVS05_01957 PF02151 UvrB/uvrC motif VSVS05_01957 PF17757 UvrB interaction domain VSVS05_01959 PF03605 Anaerobic c4-dicarboxylate membrane transporter VSVS05_01960 PF02508 Rnf-Nqr subunit, membrane protein VSVS05_01961 PF04060 Putative Fe-S cluster VSVS05_01962 PF10531 SLBB domain VSVS05_01962 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VSVS05_01962 PF12838 4Fe-4S dicluster domain VSVS05_01962 PF13375 RnfC Barrel sandwich hybrid domain VSVS05_01963 PF03116 NQR2, RnfD, RnfE family VSVS05_01965 PF02508 Rnf-Nqr subunit, membrane protein VSVS05_01966 PF00633 Helix-hairpin-helix motif VSVS05_01966 PF00730 HhH-GPD superfamily base excision DNA repair protein VSVS05_01966 PF10576 Iron-sulfur binding domain of endonuclease III VSVS05_01967 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VSVS05_01968 PF01609 Transposase DDE domain VSVS05_01968 PF13006 Insertion element 4 transposase N-terminal VSVS05_01969 PF10952 Protein of unknown function (DUF2753) VSVS05_01970 PF00691 OmpA family VSVS05_01970 PF18393 MotY N-terminal domain VSVS05_01971 PF00929 Exonuclease VSVS05_01972 PF03553 Na+/H+ antiporter family VSVS05_01972 PF13726 Na+-H+ antiporter family VSVS05_01974 PF00701 Dihydrodipicolinate synthetase family VSVS05_01976 PF00578 AhpC/TSA family VSVS05_01977 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS05_01977 PF00672 HAMP domain VSVS05_01977 PF02743 Cache domain VSVS05_01978 PF01594 AI-2E family transporter VSVS05_01980 PF01435 Peptidase family M48 VSVS05_01980 PF13181 Tetratricopeptide repeat VSVS05_01981 PF03960 ArsC family VSVS05_01982 PF03358 NADPH-dependent FMN reductase VSVS05_01985 PF00860 Permease family VSVS05_01986 PF04073 Aminoacyl-tRNA editing domain VSVS05_01987 PF02872 5'-nucleotidase, C-terminal domain VSVS05_01987 PF00149 Calcineurin-like phosphoesterase VSVS05_01988 PF00793 DAHP synthetase I family VSVS05_01989 PF13369 Transglutaminase-like superfamily VSVS05_01990 PF04247 Invasion gene expression up-regulator, SirB VSVS05_01991 PF17827 PrmC N-terminal domain VSVS05_01991 PF13847 Methyltransferase domain VSVS05_01992 PF03462 PCRF domain VSVS05_01992 PF00472 RF-1 domain VSVS05_01994 PF03550 Outer membrane lipoprotein LolB VSVS05_01996 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VSVS05_01996 PF14572 Phosphoribosyl synthetase-associated domain VSVS05_01997 PF01195 Peptidyl-tRNA hydrolase VSVS05_01998 PF06071 Protein of unknown function (DUF933) VSVS05_01998 PF01926 50S ribosome-binding GTPase VSVS05_02015 PF07196 Flagellin hook IN motif VSVS05_02015 PF00700 Bacterial flagellin C-terminal helical region VSVS05_02015 PF00669 Bacterial flagellin N-terminal helical region VSVS05_02016 PF00700 Bacterial flagellin C-terminal helical region VSVS05_02016 PF00669 Bacterial flagellin N-terminal helical region VSVS05_02016 PF07196 Flagellin hook IN motif VSVS05_02017 PF00669 Bacterial flagellin N-terminal helical region VSVS05_02018 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VSVS05_02018 PF07196 Flagellin hook IN motif VSVS05_02019 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VSVS05_02019 PF10135 Rod binding protein VSVS05_02021 PF02107 Flagellar L-ring protein VSVS05_02022 PF00460 Flagella basal body rod protein VSVS05_02022 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VSVS05_02023 PF00460 Flagella basal body rod protein VSVS05_02023 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VSVS05_02024 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VSVS05_02024 PF07559 Flagellar basal body protein FlaE VSVS05_02024 PF00460 Flagella basal body rod protein VSVS05_02025 PF13860 FlgD Ig-like domain VSVS05_02025 PF13861 FlgD Tudor-like domain VSVS05_02025 PF03963 Flagellar hook capping protein - N-terminal region VSVS05_02026 PF00460 Flagella basal body rod protein VSVS05_02026 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VSVS05_02027 PF00460 Flagella basal body rod protein VSVS05_02028 PF01739 CheR methyltransferase, SAM binding domain VSVS05_02028 PF03705 CheR methyltransferase, all-alpha domain VSVS05_02029 PF00072 Response regulator receiver domain VSVS05_02029 PF01584 CheW-like domain VSVS05_02031 PF04316 Anti-sigma-28 factor, FlgM VSVS05_02038 PF13488 Glycine zipper VSVS05_02038 PF00691 OmpA family VSVS05_02039 PF00749 tRNA synthetases class I (E and Q), catalytic domain VSVS05_02041 PF13609 Gram-negative porin VSVS05_02042 PF00403 Heavy-metal-associated domain VSVS05_02045 PF00762 Ferrochelatase VSVS05_02046 PF05191 Adenylate kinase, active site lid VSVS05_02047 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_02047 PF00183 Hsp90 protein VSVS05_02048 PF00486 Transcriptional regulatory protein, C terminal VSVS05_02049 PF17323 Trans-membrane regulatory protein ToxS VSVS05_02052 PF12850 Calcineurin-like phosphoesterase superfamily domain VSVS05_02055 PF07556 Protein of unknown function (DUF1538) VSVS05_02056 PF07556 Protein of unknown function (DUF1538) VSVS05_02057 PF01370 NAD dependent epimerase/dehydratase family VSVS05_02057 PF08338 Domain of unknown function (DUF1731) VSVS05_02058 PF00106 short chain dehydrogenase VSVS05_02059 PF00085 Thioredoxin VSVS05_02060 PF01145 SPFH domain / Band 7 family VSVS05_02060 PF16200 C-terminal region of band_7 VSVS05_02061 PF01957 NfeD-like C-terminal, partner-binding VSVS05_02064 PF13609 Gram-negative porin VSVS05_02065 PF03119 NAD-dependent DNA ligase C4 zinc finger domain VSVS05_02065 PF12826 Helix-hairpin-helix motif VSVS05_02065 PF03120 NAD-dependent DNA ligase OB-fold domain VSVS05_02065 PF00533 BRCA1 C Terminus (BRCT) domain VSVS05_02065 PF01653 NAD-dependent DNA ligase adenylation domain VSVS05_02066 PF04354 ZipA, C-terminal FtsZ-binding domain VSVS05_02068 PF00291 Pyridoxal-phosphate dependent enzyme VSVS05_02069 PF00381 PTS HPr component phosphorylation site VSVS05_02071 PF05524 PEP-utilising enzyme, N-terminal VSVS05_02071 PF02896 PEP-utilising enzyme, TIM barrel domain VSVS05_02071 PF00391 PEP-utilising enzyme, mobile domain VSVS05_02072 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VSVS05_02073 PF01494 FAD binding domain VSVS05_02074 PF00919 Uncharacterized protein family UPF0004 VSVS05_02074 PF01938 TRAM domain VSVS05_02074 PF04055 Radical SAM superfamily VSVS05_02075 PF02562 PhoH-like protein VSVS05_02076 PF02130 Uncharacterized protein family UPF0054 VSVS05_02077 PF03471 Transporter associated domain VSVS05_02077 PF00571 CBS domain VSVS05_02078 PF00795 Carbon-nitrogen hydrolase VSVS05_02079 PF07295 Zinc-ribbon containing domain VSVS05_02081 PF04390 Lipopolysaccharide-assembly VSVS05_02082 PF14840 Processivity clamp loader gamma complex DNA pol III C-term VSVS05_02082 PF06144 DNA polymerase III, delta subunit VSVS05_02084 PF02590 Predicted SPOUT methyltransferase VSVS05_02085 PF03717 Penicillin-binding Protein dimerisation domain VSVS05_02085 PF00905 Penicillin binding protein transpeptidase domain VSVS05_02086 PF01098 Cell cycle protein VSVS05_02087 PF05036 Sporulation related domain VSVS05_02087 PF03330 Lytic transglycolase VSVS05_02088 PF07943 Penicillin-binding protein 5, C-terminal domain VSVS05_02088 PF00768 D-alanyl-D-alanine carboxypeptidase VSVS05_02089 PF04359 Protein of unknown function (DUF493) VSVS05_02090 PF03099 Biotin/lipoate A/B protein ligase family VSVS05_02091 PF04055 Radical SAM superfamily VSVS05_02091 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family VSVS05_02093 PF00464 Serine hydroxymethyltransferase VSVS05_02095 PF16657 Maltogenic Amylase, C-terminal domain VSVS05_02095 PF00128 Alpha amylase, catalytic domain VSVS05_02096 PF00367 phosphotransferase system, EIIB VSVS05_02096 PF02378 Phosphotransferase system, EIIC VSVS05_02097 PF00356 Bacterial regulatory proteins, lacI family VSVS05_02100 PF09383 NIL domain VSVS05_02100 PF00005 ABC transporter VSVS05_02101 PF00528 Binding-protein-dependent transport system inner membrane component VSVS05_02102 PF03180 NLPA lipoprotein VSVS05_02103 PF00444 Ribosomal protein L36 VSVS05_02104 PF01197 Ribosomal protein L31 VSVS05_02105 PF01980 tRNA-methyltransferase O VSVS05_02105 PF18389 TrmO C-terminal domain VSVS05_02106 PF03129 Anticodon binding domain VSVS05_02106 PF04073 Aminoacyl-tRNA editing domain VSVS05_02106 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VSVS05_02108 PF13230 Glutamine amidotransferases class-II VSVS05_02109 PF13580 SIS domain VSVS05_02110 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VSVS05_02110 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VSVS05_02110 PF09317 Domain of unknown function (DUF1974) VSVS05_02110 PF02770 Acyl-CoA dehydrogenase, middle domain VSVS05_02112 PF00929 Exonuclease VSVS05_02114 PF08241 Methyltransferase domain VSVS05_02116 PF01464 Transglycosylase SLT domain VSVS05_02116 PF01476 LysM domain VSVS05_02118 PF03372 Endonuclease/Exonuclease/phosphatase family VSVS05_02119 PF00543 Nitrogen regulatory protein P-II VSVS05_02120 PF01171 PP-loop family VSVS05_02120 PF09179 TilS substrate binding domain VSVS05_02120 PF11734 TilS substrate C-terminal domain VSVS05_02121 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit VSVS05_02122 PF07733 Bacterial DNA polymerase III alpha NTPase domain VSVS05_02122 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VSVS05_02122 PF01336 OB-fold nucleic acid binding domain VSVS05_02122 PF14579 Helix-hairpin-helix motif VSVS05_02122 PF02811 PHP domain VSVS05_02123 PF01351 Ribonuclease HII VSVS05_02124 PF02684 Lipid-A-disaccharide synthetase VSVS05_02125 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 VSVS05_02125 PF00132 Bacterial transferase hexapeptide (six repeats) VSVS05_02126 PF07977 FabA-like domain VSVS05_02127 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VSVS05_02127 PF00132 Bacterial transferase hexapeptide (six repeats) VSVS05_02128 PF03938 Outer membrane protein (OmpH-like) VSVS05_02129 PF07244 Surface antigen variable number repeat VSVS05_02129 PF01103 Surface antigen VSVS05_02130 PF17820 PDZ domain VSVS05_02130 PF02163 Peptidase family M50 VSVS05_02131 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain VSVS05_02131 PF13288 DXP reductoisomerase C-terminal domain VSVS05_02131 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase VSVS05_02133 PF01255 Putative undecaprenyl diphosphate synthase VSVS05_02134 PF01765 Ribosome recycling factor VSVS05_02135 PF00696 Amino acid kinase family VSVS05_02136 PF00889 Elongation factor TS VSVS05_02137 PF00318 Ribosomal protein S2 VSVS05_02138 PF00557 Metallopeptidase family M24 VSVS05_02139 PF01842 ACT domain VSVS05_02139 PF08335 GlnD PII-uridylyltransferase VSVS05_02139 PF01966 HD domain VSVS05_02139 PF01909 Nucleotidyltransferase domain VSVS05_02140 PF11944 Protein of unknown function (DUF3461) VSVS05_02141 PF04608 Phosphatidylglycerophosphatase A VSVS05_02142 PF02769 AIR synthase related protein, C-terminal domain VSVS05_02142 PF00586 AIR synthase related protein, N-terminal domain VSVS05_02144 PF00885 6,7-dimethyl-8-ribityllumazine synthase VSVS05_02145 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VSVS05_02145 PF00925 GTP cyclohydrolase II VSVS05_02146 PF00677 Lumazine binding domain VSVS05_02147 PF01872 RibD C-terminal domain VSVS05_02147 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VSVS05_02148 PF03477 ATP cone domain VSVS05_02149 PF00171 Aldehyde dehydrogenase family VSVS05_02150 PF01472 PUA domain VSVS05_02150 PF00696 Amino acid kinase family VSVS05_02151 PF07417 Sigma factor-binding transcriptional regulator Crl VSVS05_02153 PF00156 Phosphoribosyl transferase domain VSVS05_02154 PF00860 Permease family VSVS05_02155 PF01546 Peptidase family M20/M25/M40 VSVS05_02155 PF07687 Peptidase dimerisation domain VSVS05_02156 PF08443 RimK-like ATP-grasp domain VSVS05_02156 PF18030 RimK PreATP-grasp domain VSVS05_02157 PF18030 RimK PreATP-grasp domain VSVS05_02157 PF08443 RimK-like ATP-grasp domain VSVS05_02159 PF13006 Insertion element 4 transposase N-terminal VSVS05_02159 PF01609 Transposase DDE domain VSVS05_02160 PF00209 Sodium:neurotransmitter symporter family VSVS05_02162 PF01272 Transcription elongation factor, GreA/GreB, C-term VSVS05_02162 PF03449 Transcription elongation factor, N-terminal VSVS05_02163 PF11799 impB/mucB/samB family C-terminal domain VSVS05_02163 PF00817 impB/mucB/samB family VSVS05_02163 PF11798 IMS family HHH motif VSVS05_02164 PF00072 Response regulator receiver domain VSVS05_02164 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_02166 PF02424 ApbE family VSVS05_02167 PF00175 Oxidoreductase NAD-binding domain VSVS05_02167 PF00111 2Fe-2S iron-sulfur cluster binding domain VSVS05_02167 PF00970 Oxidoreductase FAD-binding domain VSVS05_02168 PF02508 Rnf-Nqr subunit, membrane protein VSVS05_02169 PF02508 Rnf-Nqr subunit, membrane protein VSVS05_02170 PF04205 FMN-binding domain VSVS05_02171 PF03116 NQR2, RnfD, RnfE family VSVS05_02172 PF11973 NQRA C-terminal domain VSVS05_02172 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) VSVS05_02173 PF01722 BolA-like protein VSVS05_02174 PF05175 Methyltransferase small domain VSVS05_02176 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VSVS05_02177 PF07690 Major Facilitator Superfamily VSVS05_02179 PF04545 Sigma-70, region 4 VSVS05_02179 PF04542 Sigma-70 region 2 VSVS05_02181 PF03502 Nucleoside-specific channel-forming protein, Tsx VSVS05_02182 PF08546 Ketopantoate reductase PanE/ApbA C terminal VSVS05_02182 PF02558 Ketopantoate reductase PanE/ApbA VSVS05_02183 PF01965 DJ-1/PfpI family VSVS05_02184 PF00266 Aminotransferase class-V VSVS05_02185 PF00334 Nucleoside diphosphate kinase VSVS05_02186 PF12404 Peptidase VSVS05_02186 PF00883 Cytosol aminopeptidase family, catalytic domain VSVS05_02187 PF04384 Iron-sulphur cluster assembly VSVS05_02188 PF00111 2Fe-2S iron-sulfur cluster binding domain VSVS05_02189 PF00012 Hsp70 protein VSVS05_02190 PF07743 HSCB C-terminal oligomerisation domain VSVS05_02190 PF00226 DnaJ domain VSVS05_02191 PF01521 Iron-sulphur cluster biosynthesis VSVS05_02192 PF01592 NifU-like N terminal domain VSVS05_02193 PF00266 Aminotransferase class-V VSVS05_02194 PF02082 Transcriptional regulator VSVS05_02195 PF00588 SpoU rRNA Methylase family VSVS05_02196 PF00459 Inositol monophosphatase family VSVS05_02205 PF00004 ATPase family associated with various cellular activities (AAA) VSVS05_02205 PF10431 C-terminal, D2-small domain, of ClpB protein VSVS05_02205 PF07724 AAA domain (Cdc48 subfamily) VSVS05_02205 PF17871 AAA lid domain VSVS05_02205 PF02861 Clp amino terminal domain, pathogenicity island component VSVS05_02207 PF00849 RNA pseudouridylate synthase VSVS05_02207 PF01479 S4 domain VSVS05_02208 PF13525 Outer membrane lipoprotein VSVS05_02209 PF01464 Transglycosylase SLT domain VSVS05_02210 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VSVS05_02211 PF00800 Prephenate dehydratase VSVS05_02211 PF01817 Chorismate mutase type II VSVS05_02212 PF13416 Bacterial extracellular solute-binding protein VSVS05_02213 PF00563 EAL domain VSVS05_02213 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_02214 PF00563 EAL domain VSVS05_02214 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_02215 PF01931 Protein of unknown function DUF84 VSVS05_02216 PF01371 Trp repressor protein VSVS05_02217 PF01464 Transglycosylase SLT domain VSVS05_02217 PF14718 Soluble lytic murein transglycosylase L domain VSVS05_02218 PF12848 ABC transporter VSVS05_02218 PF00005 ABC transporter VSVS05_02219 PF07238 PilZ domain VSVS05_02220 PF01551 Peptidase family M23 VSVS05_02220 PF04225 Opacity-associated protein A LysM-like domain VSVS05_02221 PF01817 Chorismate mutase type II VSVS05_02221 PF02153 Prephenate dehydrogenase VSVS05_02222 PF00793 DAHP synthetase I family VSVS05_02223 PF07694 5TMR of 5TMR-LYT VSVS05_02223 PF06580 Histidine kinase VSVS05_02224 PF00072 Response regulator receiver domain VSVS05_02224 PF04397 LytTr DNA-binding domain VSVS05_02226 PF00933 Glycosyl hydrolase family 3 N terminal domain VSVS05_02227 PF03702 Anhydro-N-acetylmuramic acid kinase VSVS05_02229 PF02554 Carbon starvation protein CstA VSVS05_02230 PF02401 LytB protein VSVS05_02231 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VSVS05_02232 PF01252 Signal peptidase (SPase) II VSVS05_02233 PF08264 Anticodon-binding domain of tRNA VSVS05_02233 PF00133 tRNA synthetases class I (I, L, M and V) VSVS05_02233 PF06827 Zinc finger found in FPG and IleRS VSVS05_02234 PF01687 Riboflavin kinase VSVS05_02234 PF06574 FAD synthetase VSVS05_02235 PF03023 Lipid II flippase MurJ VSVS05_02236 PF01649 Ribosomal protein S20 VSVS05_02237 PF01022 Bacterial regulatory protein, arsR family VSVS05_02238 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_02238 PF03466 LysR substrate binding domain VSVS05_02239 PF02690 Na+/Pi-cotransporter VSVS05_02240 PF00303 Thymidylate synthase VSVS05_02243 PF01590 GAF domain VSVS05_02243 PF05524 PEP-utilising enzyme, N-terminal VSVS05_02243 PF00391 PEP-utilising enzyme, mobile domain VSVS05_02243 PF02896 PEP-utilising enzyme, TIM barrel domain VSVS05_02245 PF02976 DNA mismatch repair enzyme MutH VSVS05_02247 PF00248 Aldo/keto reductase family VSVS05_02251 PF01627 Hpt domain VSVS05_02251 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_02251 PF00512 His Kinase A (phospho-acceptor) domain VSVS05_02251 PF18415 Histidine kinase receptor ArcB trans-membrane domain VSVS05_02251 PF00989 PAS fold VSVS05_02251 PF00072 Response regulator receiver domain VSVS05_02252 PF00563 EAL domain VSVS05_02252 PF01590 GAF domain VSVS05_02252 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_02252 PF00360 Phytochrome region VSVS05_02253 PF16199 Radical_SAM C-terminal domain VSVS05_02253 PF04055 Radical SAM superfamily VSVS05_02254 PF01493 GXGXG motif VSVS05_02254 PF01645 Conserved region in glutamate synthase VSVS05_02254 PF04898 Glutamate synthase central domain VSVS05_02254 PF00310 Glutamine amidotransferases class-II VSVS05_02255 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS05_02255 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VSVS05_02258 PF13276 HTH-like domain VSVS05_02258 PF00665 Integrase core domain VSVS05_02258 PF13333 Integrase core domain VSVS05_02259 PF01527 Transposase VSVS05_02260 PF16198 tRNA pseudouridylate synthase B C-terminal domain VSVS05_02260 PF01509 TruB family pseudouridylate synthase (N terminal domain) VSVS05_02260 PF09157 Pseudouridine synthase II TruB, C-terminal VSVS05_02261 PF02033 Ribosome-binding factor A VSVS05_02262 PF11987 Translation-initiation factor 2 VSVS05_02262 PF04760 Translation initiation factor IF-2, N-terminal region VSVS05_02262 PF08364 Bacterial translation initiation factor IF-2 associated region VSVS05_02262 PF00009 Elongation factor Tu GTP binding domain VSVS05_02263 PF00575 S1 RNA binding domain VSVS05_02263 PF13184 NusA-like KH domain VSVS05_02263 PF08529 NusA N-terminal domain VSVS05_02264 PF17384 RimP C-terminal SH3 domain VSVS05_02264 PF02576 RimP N-terminal domain VSVS05_02267 PF03840 Preprotein translocase SecG subunit VSVS05_02268 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VSVS05_02268 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VSVS05_02268 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VSVS05_02268 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VSVS05_02269 PF00809 Pterin binding enzyme VSVS05_02270 PF06480 FtsH Extracellular VSVS05_02270 PF01434 Peptidase family M41 VSVS05_02270 PF17862 AAA+ lid domain VSVS05_02270 PF00004 ATPase family associated with various cellular activities (AAA) VSVS05_02271 PF01728 FtsJ-like methyltransferase VSVS05_02272 PF01985 CRS1 / YhbY (CRM) domain VSVS05_02273 PF01272 Transcription elongation factor, GreA/GreB, C-term VSVS05_02273 PF03449 Transcription elongation factor, N-terminal VSVS05_02274 PF13609 Gram-negative porin VSVS05_02275 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family VSVS05_02277 PF00579 tRNA synthetases class I (W and Y) VSVS05_02278 PF01476 LysM domain VSVS05_02278 PF08525 Opacity-associated protein A N-terminal motif VSVS05_02278 PF01551 Peptidase family M23 VSVS05_02279 PF00873 AcrB/AcrD/AcrF family VSVS05_02280 PF00873 AcrB/AcrD/AcrF family VSVS05_02281 PF00873 AcrB/AcrD/AcrF family VSVS05_02282 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VSVS05_02282 PF00529 HlyD membrane-fusion protein of T1SS VSVS05_02284 PF00202 Aminotransferase class-III VSVS05_02285 PF01594 AI-2E family transporter VSVS05_02286 PF05175 Methyltransferase small domain VSVS05_02286 PF08468 Methyltransferase small domain N-terminal VSVS05_02287 PF00512 His Kinase A (phospho-acceptor) domain VSVS05_02287 PF00497 Bacterial extracellular solute-binding proteins, family 3 VSVS05_02287 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_02287 PF00072 Response regulator receiver domain VSVS05_02288 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VSVS05_02289 PF00528 Binding-protein-dependent transport system inner membrane component VSVS05_02290 PF00528 Binding-protein-dependent transport system inner membrane component VSVS05_02290 PF12911 N-terminal TM domain of oligopeptide transport permease C VSVS05_02291 PF00005 ABC transporter VSVS05_02291 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VSVS05_02292 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VSVS05_02292 PF00005 ABC transporter VSVS05_02294 PF01869 BadF/BadG/BcrA/BcrD ATPase family VSVS05_02295 PF00728 Glycosyl hydrolase family 20, catalytic domain VSVS05_02295 PF02838 Glycosyl hydrolase family 20, domain 2 VSVS05_02296 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain VSVS05_02296 PF06165 Glycosyltransferase family 36 VSVS05_02297 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VSVS05_02297 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VSVS05_02297 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VSVS05_02297 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VSVS05_02298 PF01965 DJ-1/PfpI family VSVS05_02300 PF08402 TOBE domain VSVS05_02300 PF00005 ABC transporter VSVS05_02301 PF00528 Binding-protein-dependent transport system inner membrane component VSVS05_02302 PF13416 Bacterial extracellular solute-binding protein VSVS05_02303 PF00909 Ammonium Transporter Family VSVS05_02304 PF00543 Nitrogen regulatory protein P-II VSVS05_02305 PF06062 Uncharacterised protein family (UPF0231) VSVS05_02306 PF17853 GGDEF-like domain VSVS05_02306 PF05651 Putative sugar diacid recognition VSVS05_02306 PF13556 PucR C-terminal helix-turn-helix domain VSVS05_02307 PF02447 GntP family permease VSVS05_02308 PF02595 Glycerate kinase family VSVS05_02309 PF11791 Aconitate B N-terminal domain VSVS05_02309 PF06434 Aconitate hydratase 2 N-terminus VSVS05_02309 PF00330 Aconitase family (aconitate hydratase) VSVS05_02310 PF01734 Patatin-like phospholipase VSVS05_02311 PF14814 Bifunctional transglycosylase second domain VSVS05_02311 PF00912 Transglycosylase VSVS05_02311 PF00905 Penicillin binding protein transpeptidase domain VSVS05_02312 PF00271 Helicase conserved C-terminal domain VSVS05_02312 PF08482 ATP-dependent helicase C-terminal VSVS05_02312 PF00270 DEAD/DEAH box helicase VSVS05_02312 PF04408 Helicase associated domain (HA2) VSVS05_02313 PF03749 Sugar fermentation stimulation protein RE domain VSVS05_02313 PF17746 SfsA N-terminal OB domain VSVS05_02314 PF01258 Prokaryotic dksA/traR C4-type zinc finger VSVS05_02315 PF00749 tRNA synthetases class I (E and Q), catalytic domain VSVS05_02316 PF12626 Polymerase A arginine-rich C-terminus VSVS05_02316 PF12627 Probable RNA and SrmB- binding site of polymerase A VSVS05_02316 PF01743 Poly A polymerase head domain VSVS05_02317 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VSVS05_02318 PF02548 Ketopantoate hydroxymethyltransferase VSVS05_02319 PF02569 Pantoate-beta-alanine ligase VSVS05_02320 PF01061 ABC-2 type transporter VSVS05_02321 PF00005 ABC transporter VSVS05_02322 PF01740 STAS domain VSVS05_02322 PF00916 Sulfate permease family VSVS05_02323 PF00484 Carbonic anhydrase VSVS05_02324 PF00156 Phosphoribosyl transferase domain VSVS05_02325 PF00440 Bacterial regulatory proteins, tetR family VSVS05_02326 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS05_02326 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VSVS05_02327 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VSVS05_02327 PF02817 e3 binding domain VSVS05_02327 PF00364 Biotin-requiring enzyme VSVS05_02328 PF17831 Pyruvate dehydrogenase E1 component middle domain VSVS05_02328 PF00456 Transketolase, thiamine diphosphate binding domain VSVS05_02329 PF00392 Bacterial regulatory proteins, gntR family VSVS05_02329 PF07729 FCD domain VSVS05_02330 PF02272 DHHA1 domain VSVS05_02330 PF17768 RecJ OB domain VSVS05_02330 PF01368 DHH family VSVS05_02331 PF13098 Thioredoxin-like domain VSVS05_02331 PF10411 Disulfide bond isomerase protein N-terminus VSVS05_02332 PF02899 Phage integrase, N-terminal SAM-like domain VSVS05_02332 PF00589 Phage integrase family VSVS05_02333 PF00258 Flavodoxin VSVS05_02334 PF01510 N-acetylmuramoyl-L-alanine amidase VSVS05_02335 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain VSVS05_02335 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain VSVS05_02337 PF03739 Lipopolysaccharide export system permease LptF/LptG VSVS05_02338 PF03739 Lipopolysaccharide export system permease LptF/LptG VSVS05_02339 PF02789 Cytosol aminopeptidase family, N-terminal domain VSVS05_02339 PF00883 Cytosol aminopeptidase family, catalytic domain VSVS05_02340 PF04364 DNA polymerase III chi subunit, HolC VSVS05_02341 PF00133 tRNA synthetases class I (I, L, M and V) VSVS05_02341 PF08264 Anticodon-binding domain of tRNA VSVS05_02341 PF10458 Valyl tRNA synthetase tRNA binding arm VSVS05_02342 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VSVS05_02342 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VSVS05_02343 PF00849 RNA pseudouridylate synthase VSVS05_02344 PF18339 RapA N-terminal Tudor like domain 1 VSVS05_02344 PF00176 SNF2 family N-terminal domain VSVS05_02344 PF12137 RNA polymerase recycling family C-terminal VSVS05_02344 PF00271 Helicase conserved C-terminal domain VSVS05_02344 PF18337 RapA N-terminal Tudor like domain VSVS05_02345 PF02562 PhoH-like protein VSVS05_02345 PF13638 PIN domain VSVS05_02346 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VSVS05_02346 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VSVS05_02347 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VSVS05_02347 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VSVS05_02348 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VSVS05_02348 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VSVS05_02349 PF01042 Endoribonuclease L-PSP VSVS05_02350 PF05099 Tellurite resistance protein TerB VSVS05_02350 PF00226 DnaJ domain VSVS05_02351 PF03968 OstA-like protein VSVS05_02351 PF04453 LPS transport system D VSVS05_02352 PF09312 SurA N-terminal domain VSVS05_02353 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VSVS05_02354 PF00398 Ribosomal RNA adenine dimethylase VSVS05_02355 PF04379 ApaG domain VSVS05_02356 PF00149 Calcineurin-like phosphoesterase VSVS05_02357 PF00186 Dihydrofolate reductase VSVS05_02358 PF12821 Threonine/Serine exporter, ThrE VSVS05_02359 PF06738 Putative threonine/serine exporter VSVS05_02360 PF01926 50S ribosome-binding GTPase VSVS05_02360 PF01018 GTP1/OBG VSVS05_02361 PF01016 Ribosomal L27 protein VSVS05_02362 PF00829 Ribosomal prokaryotic L21 protein VSVS05_02363 PF00348 Polyprenyl synthetase VSVS05_02365 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VSVS05_02365 PF00056 lactate/malate dehydrogenase, NAD binding domain VSVS05_02366 PF01316 Arginine repressor, DNA binding domain VSVS05_02366 PF02863 Arginine repressor, C-terminal domain VSVS05_02369 PF00582 Universal stress protein family VSVS05_02377 PF06877 Regulator of ribonuclease activity B VSVS05_02379 PF01523 Putative modulator of DNA gyrase VSVS05_02380 PF00795 Carbon-nitrogen hydrolase VSVS05_02382 PF00575 S1 RNA binding domain VSVS05_02382 PF10150 Ribonuclease E/G family VSVS05_02383 PF02545 Maf-like protein VSVS05_02384 PF04093 rod shape-determining protein MreD VSVS05_02385 PF04085 rod shape-determining protein MreC VSVS05_02388 PF13358 DDE superfamily endonuclease VSVS05_02394 PF07963 Prokaryotic N-terminal methylation motif VSVS05_02394 PF00114 Pilin (bacterial filament) VSVS05_02395 PF07963 Prokaryotic N-terminal methylation motif VSVS05_02395 PF00114 Pilin (bacterial filament) VSVS05_02397 PF00482 Type II secretion system (T2SS), protein F VSVS05_02398 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VSVS05_02398 PF00437 Type II/IV secretion system protein VSVS05_02400 PF13401 AAA domain VSVS05_02400 PF01471 Putative peptidoglycan binding domain VSVS05_02401 PF00263 Bacterial type II and III secretion system protein VSVS05_02401 PF03958 Bacterial type II/III secretion system short domain VSVS05_02405 PF17157 Gammaproteobacterial periplasmic sensor domain VSVS05_02405 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_02405 PF00563 EAL domain VSVS05_02406 PF00436 Single-strand binding protein family VSVS05_02407 PF00196 Bacterial regulatory proteins, luxR family VSVS05_02408 PF00483 Nucleotidyl transferase VSVS05_02409 PF00005 ABC transporter VSVS05_02409 PF17755 UvrA DNA-binding domain VSVS05_02409 PF17760 UvrA interaction domain VSVS05_02411 PF00266 Aminotransferase class-V VSVS05_02412 PF00696 Amino acid kinase family VSVS05_02412 PF01842 ACT domain VSVS05_02413 PF00437 Type II/IV secretion system protein VSVS05_02414 PF00437 Type II/IV secretion system protein VSVS05_02415 PF01168 Alanine racemase, N-terminal domain VSVS05_02416 PF14748 Pyrroline-5-carboxylate reductase dimerisation VSVS05_02416 PF03807 NADP oxidoreductase coenzyme F420-dependent VSVS05_02417 PF02325 YGGT family VSVS05_02418 PF02594 Uncharacterised ACR, YggU family COG1872 VSVS05_02420 PF01725 Ham1 family VSVS05_02421 PF04055 Radical SAM superfamily VSVS05_02421 PF06969 HemN C-terminal domain VSVS05_02422 PF04960 Glutaminase VSVS05_02423 PF02390 Putative methyltransferase VSVS05_02424 PF00633 Helix-hairpin-helix motif VSVS05_02424 PF00730 HhH-GPD superfamily base excision DNA repair protein VSVS05_02424 PF14815 NUDIX domain VSVS05_02425 PF04362 Bacterial Fe(2+) trafficking VSVS05_02426 PF01464 Transglycosylase SLT domain VSVS05_02426 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VSVS05_02431 PF17200 Single Cache domain 2 VSVS05_02431 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS05_02431 PF00672 HAMP domain VSVS05_02438 PF01553 Acyltransferase VSVS05_02439 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VSVS05_02440 PF01722 BolA-like protein VSVS05_02442 PF05494 MlaC protein VSVS05_02443 PF02470 MlaD protein VSVS05_02444 PF02405 Permease MlaE VSVS05_02445 PF00005 ABC transporter VSVS05_02446 PF01699 Sodium/calcium exchanger protein VSVS05_02447 PF00571 CBS domain VSVS05_02447 PF01380 SIS domain VSVS05_02450 PF03968 OstA-like protein VSVS05_02451 PF12399 Branched-chain amino acid ATP-binding cassette transporter VSVS05_02451 PF00005 ABC transporter VSVS05_02452 PF04963 Sigma-54 factor, core binding domain VSVS05_02452 PF04552 Sigma-54, DNA binding domain VSVS05_02452 PF00309 Sigma-54 factor, Activator interacting domain (AID) VSVS05_02453 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VSVS05_02454 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VSVS05_02455 PF03668 P-loop ATPase protein family VSVS05_02456 PF00381 PTS HPr component phosphorylation site VSVS05_02457 PF00571 CBS domain VSVS05_02457 PF01769 Divalent cation transporter VSVS05_02457 PF03448 MgtE intracellular N domain VSVS05_02458 PF02607 B12 binding domain VSVS05_02458 PF02965 Vitamin B12 dependent methionine synthase, activation domain VSVS05_02458 PF02310 B12 binding domain VSVS05_02458 PF00809 Pterin binding enzyme VSVS05_02458 PF02574 Homocysteine S-methyltransferase VSVS05_02459 PF00999 Sodium/hydrogen exchanger family VSVS05_02472 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VSVS05_02472 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VSVS05_02473 PF00667 FAD binding domain VSVS05_02473 PF00258 Flavodoxin VSVS05_02473 PF00175 Oxidoreductase NAD-binding domain VSVS05_02477 PF01207 Dihydrouridine synthase (Dus) VSVS05_02478 PF01475 Ferric uptake regulator family VSVS05_02481 PF03600 Citrate transporter VSVS05_02481 PF02080 TrkA-C domain VSVS05_02482 PF00009 Elongation factor Tu GTP binding domain VSVS05_02483 PF01507 Phosphoadenosine phosphosulfate reductase family VSVS05_02484 PF14824 Sirohaem biosynthesis protein central VSVS05_02484 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VSVS05_02484 PF10414 Sirohaem synthase dimerisation region VSVS05_02485 PF00149 Calcineurin-like phosphoesterase VSVS05_02485 PF02872 5'-nucleotidase, C-terminal domain VSVS05_02487 PF13673 Acetyltransferase (GNAT) domain VSVS05_02488 PF00892 EamA-like transporter family VSVS05_02490 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VSVS05_02490 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VSVS05_02492 PF01196 Ribosomal protein L17 VSVS05_02494 PF01479 S4 domain VSVS05_02494 PF00163 Ribosomal protein S4/S9 N-terminal domain VSVS05_02495 PF00411 Ribosomal protein S11 VSVS05_02496 PF00416 Ribosomal protein S13/S18 VSVS05_02497 PF00444 Ribosomal protein L36 VSVS05_02498 PF00344 SecY translocase VSVS05_02499 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A VSVS05_02500 PF00327 Ribosomal protein L30p/L7e VSVS05_02501 PF00333 Ribosomal protein S5, N-terminal domain VSVS05_02501 PF03719 Ribosomal protein S5, C-terminal domain VSVS05_02502 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast VSVS05_02503 PF00347 Ribosomal protein L6 VSVS05_02504 PF00410 Ribosomal protein S8 VSVS05_02505 PF00253 Ribosomal protein S14p/S29e VSVS05_02506 PF00281 Ribosomal protein L5 VSVS05_02506 PF00673 ribosomal L5P family C-terminus VSVS05_02507 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 VSVS05_02507 PF00467 KOW motif VSVS05_02508 PF00238 Ribosomal protein L14p/L23e VSVS05_02509 PF00366 Ribosomal protein S17 VSVS05_02510 PF00831 Ribosomal L29 protein VSVS05_02511 PF00252 Ribosomal protein L16p/L10e VSVS05_02512 PF00189 Ribosomal protein S3, C-terminal domain VSVS05_02512 PF07650 KH domain VSVS05_02513 PF00237 Ribosomal protein L22p/L17e VSVS05_02514 PF00203 Ribosomal protein S19 VSVS05_02515 PF00181 Ribosomal Proteins L2, RNA binding domain VSVS05_02515 PF03947 Ribosomal Proteins L2, C-terminal domain VSVS05_02516 PF00276 Ribosomal protein L23 VSVS05_02518 PF00297 Ribosomal protein L3 VSVS05_02519 PF00338 Ribosomal protein S10p/S20e VSVS05_02520 PF00588 SpoU rRNA Methylase family VSVS05_02520 PF08032 RNA 2'-O ribose methyltransferase substrate binding VSVS05_02521 PF00773 RNB domain VSVS05_02521 PF08461 Ribonuclease R winged-helix domain VSVS05_02521 PF08206 Ribonuclease B OB domain VSVS05_02521 PF17876 Cold shock domain VSVS05_02521 PF00575 S1 RNA binding domain VSVS05_02522 PF01979 Amidohydrolase family VSVS05_02523 PF08238 Sel1 repeat VSVS05_02524 PF00709 Adenylosuccinate synthetase VSVS05_02525 PF01112 Asparaginase VSVS05_02526 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VSVS05_02527 PF09526 Probable metal-binding protein (DUF2387) VSVS05_02528 PF02254 TrkA-N domain VSVS05_02528 PF00999 Sodium/hydrogen exchanger family VSVS05_02529 PF02525 Flavodoxin-like fold VSVS05_02530 PF00005 ABC transporter VSVS05_02530 PF12848 ABC transporter VSVS05_02532 PF00561 alpha/beta hydrolase fold VSVS05_02533 PF06794 Uncharacterised protein family (UPF0270) VSVS05_02534 PF00485 Phosphoribulokinase / Uridine kinase family VSVS05_02536 PF13545 Crp-like helix-turn-helix domain VSVS05_02536 PF00027 Cyclic nucleotide-binding domain VSVS05_02538 PF00171 Aldehyde dehydrogenase family VSVS05_02539 PF04958 Arginine N-succinyltransferase beta subunit VSVS05_02540 PF00202 Aminotransferase class-III VSVS05_02541 PF00202 Aminotransferase class-III VSVS05_02542 PF00117 Glutamine amidotransferase class-I VSVS05_02543 PF00579 tRNA synthetases class I (W and Y) VSVS05_02544 PF13419 Haloacid dehalogenase-like hydrolase VSVS05_02545 PF00834 Ribulose-phosphate 3 epimerase family VSVS05_02546 PF02086 D12 class N6 adenine-specific DNA methyltransferase VSVS05_02549 PF01202 Shikimate kinase VSVS05_02550 PF00263 Bacterial type II and III secretion system protein VSVS05_02550 PF03958 Bacterial type II/III secretion system short domain VSVS05_02550 PF11741 AMIN domain VSVS05_02550 PF07660 Secretin and TonB N terminus short domain VSVS05_02555 PF00905 Penicillin binding protein transpeptidase domain VSVS05_02555 PF00912 Transglycosylase VSVS05_02555 PF17092 Penicillin-binding protein OB-like domain VSVS05_02556 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_02556 PF03466 LysR substrate binding domain VSVS05_02557 PF08534 Redoxin VSVS05_02557 PF00462 Glutaredoxin VSVS05_02558 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS05_02558 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VSVS05_02559 PF00583 Acetyltransferase (GNAT) family VSVS05_02559 PF14698 Argininosuccinate lyase C-terminal VSVS05_02559 PF00206 Lyase VSVS05_02560 PF00764 Arginosuccinate synthase VSVS05_02561 PF00696 Amino acid kinase family VSVS05_02562 PF02774 Semialdehyde dehydrogenase, dimerisation domain VSVS05_02562 PF01118 Semialdehyde dehydrogenase, NAD binding domain VSVS05_02564 PF00311 Phosphoenolpyruvate carboxylase VSVS05_02566 PF00132 Bacterial transferase hexapeptide (six repeats) VSVS05_02566 PF06426 Serine acetyltransferase, N-terminal VSVS05_02567 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VSVS05_02567 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VSVS05_02568 PF02556 Preprotein translocase subunit SecB VSVS05_02569 PF00581 Rhodanese-like domain VSVS05_02571 PF00152 tRNA synthetases class II (D, K and N) VSVS05_02573 PF02910 Fumarate reductase flavoprotein C-term VSVS05_02573 PF00890 FAD binding domain VSVS05_02574 PF13085 2Fe-2S iron-sulfur cluster binding domain VSVS05_02574 PF13183 4Fe-4S dicluster domain VSVS05_02575 PF02300 Fumarate reductase subunit C VSVS05_02576 PF02313 Fumarate reductase subunit D VSVS05_02577 PF00004 ATPase family associated with various cellular activities (AAA) VSVS05_02577 PF07724 AAA domain (Cdc48 subfamily) VSVS05_02578 PF00227 Proteasome subunit VSVS05_02580 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF VSVS05_02582 PF06082 Exopolysaccharide biosynthesis protein YbjH VSVS05_02586 PF16363 GDP-mannose 4,6 dehydratase VSVS05_02587 PF02719 Polysaccharide biosynthesis protein VSVS05_02588 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VSVS05_02590 PF02397 Bacterial sugar transferase VSVS05_02591 PF13579 Glycosyl transferase 4-like domain VSVS05_02592 PF02350 UDP-N-acetylglucosamine 2-epimerase VSVS05_02593 PF01370 NAD dependent epimerase/dehydratase family VSVS05_02594 PF02719 Polysaccharide biosynthesis protein VSVS05_02594 PF08485 Polysaccharide biosynthesis protein C-terminal VSVS05_02598 PF00535 Glycosyl transferase family 2 VSVS05_02600 PF00535 Glycosyl transferase family 2 VSVS05_02601 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VSVS05_02602 PF01370 NAD dependent epimerase/dehydratase family VSVS05_02603 PF16363 GDP-mannose 4,6 dehydratase VSVS05_02604 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VSVS05_02604 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VSVS05_02604 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VSVS05_02604 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VSVS05_02605 PF01609 Transposase DDE domain VSVS05_02605 PF13808 DDE_Tnp_1-associated VSVS05_02606 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VSVS05_02606 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VSVS05_02606 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VSVS05_02606 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VSVS05_02607 PF00483 Nucleotidyl transferase VSVS05_02607 PF01050 Mannose-6-phosphate isomerase VSVS05_02608 PF00293 NUDIX domain VSVS05_02609 PF02357 Transcription termination factor nusG VSVS05_02610 PF05036 Sporulation related domain VSVS05_02611 PF00356 Bacterial regulatory proteins, lacI family VSVS05_02612 PF18319 PriA DNA helicase Cys-rich region (CRR) domain VSVS05_02612 PF17764 3′ DNA-binding domain (3′BD) VSVS05_02612 PF00271 Helicase conserved C-terminal domain VSVS05_02612 PF00270 DEAD/DEAH box helicase VSVS05_02612 PF18074 Primosomal protein N C-terminal domain VSVS05_02614 PF03949 Malic enzyme, NAD binding domain VSVS05_02614 PF00390 Malic enzyme, N-terminal domain VSVS05_02615 PF01340 Met Apo-repressor, MetJ VSVS05_02616 PF01340 Met Apo-repressor, MetJ VSVS05_02617 PF01053 Cys/Met metabolism PLP-dependent enzyme VSVS05_02618 PF00742 Homoserine dehydrogenase VSVS05_02618 PF00696 Amino acid kinase family VSVS05_02618 PF03447 Homoserine dehydrogenase, NAD binding domain VSVS05_02619 PF02219 Methylenetetrahydrofolate reductase VSVS05_02621 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded VSVS05_02622 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_02622 PF05230 MASE2 domain VSVS05_02623 PF00118 TCP-1/cpn60 chaperonin family VSVS05_02624 PF00166 Chaperonin 10 Kd subunit VSVS05_02626 PF03099 Biotin/lipoate A/B protein ligase family VSVS05_02626 PF08279 HTH domain VSVS05_02626 PF02237 Biotin protein ligase C terminal domain VSVS05_02627 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VSVS05_02627 PF01565 FAD binding domain VSVS05_02630 PF13091 PLD-like domain VSVS05_02631 PF01370 NAD dependent epimerase/dehydratase family VSVS05_02632 PF03279 Bacterial lipid A biosynthesis acyltransferase VSVS05_02633 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VSVS05_02634 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VSVS05_02634 PF00534 Glycosyl transferases group 1 VSVS05_02638 PF00977 Histidine biosynthesis protein VSVS05_02639 PF00117 Glutamine amidotransferase class-I VSVS05_02640 PF13358 DDE superfamily endonuclease VSVS05_02643 PF02348 Cytidylyltransferase VSVS05_02645 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VSVS05_02645 PF02894 Oxidoreductase family, C-terminal alpha/beta domain VSVS05_02646 PF00483 Nucleotidyl transferase VSVS05_02648 PF08666 SAF domain VSVS05_02648 PF03102 NeuB family VSVS05_02649 PF02350 UDP-N-acetylglucosamine 2-epimerase VSVS05_02650 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VSVS05_02651 PF02719 Polysaccharide biosynthesis protein VSVS05_02652 PF00872 Transposase, Mutator family VSVS05_02653 PF00872 Transposase, Mutator family VSVS05_02654 PF00535 Glycosyl transferase family 2 VSVS05_02655 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VSVS05_02663 PF05523 WxcM-like, C-terminal VSVS05_02664 PF00483 Nucleotidyl transferase VSVS05_02665 PF16363 GDP-mannose 4,6 dehydratase VSVS05_02666 PF11893 Domain of unknown function (DUF3413) VSVS05_02666 PF00884 Sulfatase VSVS05_02669 PF01219 Prokaryotic diacylglycerol kinase VSVS05_02670 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VSVS05_02671 PF00535 Glycosyl transferase family 2 VSVS05_02672 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VSVS05_02673 PF01467 Cytidylyltransferase-like VSVS05_02675 PF06827 Zinc finger found in FPG and IleRS VSVS05_02675 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain VSVS05_02675 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain VSVS05_02677 PF00471 Ribosomal protein L33 VSVS05_02679 PF04002 RadC-like JAB domain VSVS05_02680 PF17200 Single Cache domain 2 VSVS05_02680 PF00672 HAMP domain VSVS05_02680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS05_02681 PF02441 Flavoprotein VSVS05_02681 PF04127 DNA / pantothenate metabolism flavoprotein VSVS05_02682 PF00440 Bacterial regulatory proteins, tetR family VSVS05_02683 PF03279 Bacterial lipid A biosynthesis acyltransferase VSVS05_02684 PF00156 Phosphoribosyl transferase domain VSVS05_02685 PF01138 3' exoribonuclease family, domain 1 VSVS05_02685 PF03725 3' exoribonuclease family, domain 2 VSVS05_02686 PF03755 YicC-like family, N-terminal region VSVS05_02686 PF08340 Domain of unknown function (DUF1732) VSVS05_02687 PF08543 Phosphomethylpyrimidine kinase VSVS05_02689 PF00860 Permease family VSVS05_02691 PF00625 Guanylate kinase VSVS05_02692 PF01192 RNA polymerase Rpb6 VSVS05_02693 PF02824 TGS domain VSVS05_02693 PF04607 Region found in RelA / SpoT proteins VSVS05_02693 PF13291 ACT domain VSVS05_02694 PF13291 ACT domain VSVS05_02694 PF04607 Region found in RelA / SpoT proteins VSVS05_02694 PF02824 TGS domain VSVS05_02695 PF12105 SpoU, rRNA methylase, C-terminal VSVS05_02695 PF00588 SpoU rRNA Methylase family VSVS05_02696 PF17191 RecG wedge domain VSVS05_02696 PF00271 Helicase conserved C-terminal domain VSVS05_02696 PF00270 DEAD/DEAH box helicase VSVS05_02697 PF03173 Putative carbohydrate binding domain VSVS05_02697 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VSVS05_02697 PF00728 Glycosyl hydrolase family 20, catalytic domain VSVS05_02697 PF02838 Glycosyl hydrolase family 20, domain 2 VSVS05_02698 PF00459 Inositol monophosphatase family VSVS05_02699 PF00293 NUDIX domain VSVS05_02700 PF01106 NifU-like domain VSVS05_02700 PF01521 Iron-sulphur cluster biosynthesis VSVS05_02701 PF00156 Phosphoribosyl transferase domain VSVS05_02702 PF00561 alpha/beta hydrolase fold VSVS05_02704 PF00575 S1 RNA binding domain VSVS05_02704 PF09371 Tex-like protein N-terminal domain VSVS05_02704 PF17674 HHH domain VSVS05_02704 PF16921 Tex protein YqgF-like domain VSVS05_02705 PF03449 Transcription elongation factor, N-terminal VSVS05_02705 PF01272 Transcription elongation factor, GreA/GreB, C-term VSVS05_02706 PF00072 Response regulator receiver domain VSVS05_02706 PF00486 Transcriptional regulatory protein, C terminal VSVS05_02707 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_02707 PF00512 His Kinase A (phospho-acceptor) domain VSVS05_02707 PF00672 HAMP domain VSVS05_02708 PF01203 Type II secretion system (T2SS), protein N VSVS05_02709 PF04612 Type II secretion system (T2SS), protein M VSVS05_02710 PF12693 GspL periplasmic domain VSVS05_02710 PF05134 Type II secretion system (T2SS), protein L VSVS05_02711 PF03934 Type II secretion system (T2SS), protein K VSVS05_02712 PF07963 Prokaryotic N-terminal methylation motif VSVS05_02712 PF11612 Type II secretion system (T2SS), protein J VSVS05_02713 PF02501 Type II secretion system (T2SS), protein I VSVS05_02713 PF07963 Prokaryotic N-terminal methylation motif VSVS05_02714 PF12019 Type II transport protein GspH VSVS05_02715 PF08334 Type II secretion system (T2SS), protein G VSVS05_02715 PF07963 Prokaryotic N-terminal methylation motif VSVS05_02716 PF00482 Type II secretion system (T2SS), protein F VSVS05_02717 PF00482 Type II secretion system (T2SS), protein F VSVS05_02718 PF00437 Type II/IV secretion system protein VSVS05_02719 PF03958 Bacterial type II/III secretion system short domain VSVS05_02719 PF00263 Bacterial type II and III secretion system protein VSVS05_02720 PF11356 Type II secretion system protein C VSVS05_02721 PF01479 S4 domain VSVS05_02722 PF01430 Hsp33 protein VSVS05_02723 PF01293 Phosphoenolpyruvate carboxykinase VSVS05_02725 PF00583 Acetyltransferase (GNAT) family VSVS05_02725 PF09500 Putative thioesterase (yiiD_Cterm) VSVS05_02731 PF00120 Glutamine synthetase, catalytic domain VSVS05_02731 PF03951 Glutamine synthetase, beta-Grasp domain VSVS05_02732 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_02732 PF00512 His Kinase A (phospho-acceptor) domain VSVS05_02732 PF00989 PAS fold VSVS05_02733 PF00072 Response regulator receiver domain VSVS05_02733 PF02954 Bacterial regulatory protein, Fis family VSVS05_02733 PF00158 Sigma-54 interaction domain VSVS05_02734 PF03707 Bacterial signalling protein N terminal repeat VSVS05_02734 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_02734 PF00563 EAL domain VSVS05_02734 PF13188 PAS domain VSVS05_02735 PF00962 Adenosine/AMP deaminase VSVS05_02743 PF00132 Bacterial transferase hexapeptide (six repeats) VSVS05_02744 PF07369 Protein of unknown function (DUF1488) VSVS05_02745 PF18317 Shikimate 5'-dehydrogenase C-terminal domain VSVS05_02745 PF08501 Shikimate dehydrogenase substrate binding domain VSVS05_02745 PF01488 Shikimate / quinate 5-dehydrogenase VSVS05_02747 PF01300 Telomere recombination VSVS05_02748 PF00731 AIR carboxylase VSVS05_02749 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain VSVS05_02749 PF02222 ATP-grasp domain VSVS05_02751 PF04361 Protein of unknown function (DUF494) VSVS05_02752 PF17782 DprA winged helix domain VSVS05_02752 PF02481 DNA recombination-mediator protein A VSVS05_02754 PF01327 Polypeptide deformylase VSVS05_02755 PF00551 Formyl transferase VSVS05_02755 PF02911 Formyl transferase, C-terminal domain VSVS05_02756 PF01029 NusB family VSVS05_02756 PF01189 16S rRNA methyltransferase RsmB/F VSVS05_02757 PF02254 TrkA-N domain VSVS05_02757 PF02080 TrkA-C domain VSVS05_02758 PF02386 Cation transport protein VSVS05_02759 PF03006 Haemolysin-III related VSVS05_02760 PF07070 SpoOM protein VSVS05_02761 PF06288 Protein of unknown function (DUF1040) VSVS05_02762 PF12801 4Fe-4S binding domain VSVS05_02762 PF13746 4Fe-4S dicluster domain VSVS05_02762 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase VSVS05_02763 PF01636 Phosphotransferase enzyme family VSVS05_02764 PF01323 DSBA-like thioredoxin domain VSVS05_02766 PF01078 Magnesium chelatase, subunit ChlI VSVS05_02766 PF13335 Magnesium chelatase, subunit ChlI C-terminal VSVS05_02767 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VSVS05_02767 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VSVS05_02767 PF00205 Thiamine pyrophosphate enzyme, central domain VSVS05_02769 PF01063 Amino-transferase class IV VSVS05_02770 PF00920 Dehydratase family VSVS05_02771 PF00291 Pyridoxal-phosphate dependent enzyme VSVS05_02771 PF00585 C-terminal regulatory domain of Threonine dehydratase VSVS05_02772 PF08240 Alcohol dehydrogenase GroES-like domain VSVS05_02772 PF00107 Zinc-binding dehydrogenase VSVS05_02773 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_02773 PF03466 LysR substrate binding domain VSVS05_02774 PF01206 Sulfurtransferase TusA VSVS05_02776 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VSVS05_02777 PF02091 Glycyl-tRNA synthetase alpha subunit VSVS05_02778 PF02092 Glycyl-tRNA synthetase beta subunit VSVS05_02778 PF05746 DALR anticodon binding domain VSVS05_02779 PF00155 Aminotransferase class I and II VSVS05_02780 PF00011 Hsp20/alpha crystallin family VSVS05_02781 PF00986 DNA gyrase B subunit, carboxyl terminus VSVS05_02781 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_02781 PF01751 Toprim domain VSVS05_02781 PF18053 DNA gyrase B subunit insert domain VSVS05_02781 PF00204 DNA gyrase B VSVS05_02782 PF02463 RecF/RecN/SMC N terminal domain VSVS05_02783 PF02463 RecF/RecN/SMC N terminal domain VSVS05_02784 PF00712 DNA polymerase III beta subunit, N-terminal domain VSVS05_02784 PF02767 DNA polymerase III beta subunit, central domain VSVS05_02784 PF02768 DNA polymerase III beta subunit, C-terminal domain VSVS05_02785 PF08299 Bacterial dnaA protein helix-turn-helix VSVS05_02785 PF11638 DnaA N-terminal domain VSVS05_02785 PF00308 Bacterial dnaA protein VSVS05_02786 PF00497 Bacterial extracellular solute-binding proteins, family 3 VSVS05_02787 PF00528 Binding-protein-dependent transport system inner membrane component VSVS05_02788 PF00005 ABC transporter VSVS05_02789 PF00468 Ribosomal protein L34 VSVS05_02790 PF00825 Ribonuclease P VSVS05_02791 PF01809 Putative membrane protein insertion efficiency factor VSVS05_02792 PF02096 60Kd inner membrane protein VSVS05_02792 PF14849 YidC periplasmic domain VSVS05_02793 PF12631 MnmE helical domain VSVS05_02793 PF01926 50S ribosome-binding GTPase VSVS05_02793 PF10396 GTP-binding protein TrmE N-terminus VSVS05_02794 PF00258 Flavodoxin VSVS05_02795 PF13932 GidA associated domain VSVS05_02795 PF01134 Glucose inhibited division protein A VSVS05_02796 PF13614 AAA domain VSVS05_02797 PF02195 ParB-like nuclease domain VSVS05_02797 PF17762 HTH domain found in ParB protein VSVS05_02798 PF03899 ATP synthase I chain VSVS05_02799 PF00119 ATP synthase A chain VSVS05_02800 PF00137 ATP synthase subunit C VSVS05_02801 PF00430 ATP synthase B/B' CF(0) VSVS05_02802 PF00213 ATP synthase delta (OSCP) subunit VSVS05_02803 PF00306 ATP synthase alpha/beta chain, C terminal domain VSVS05_02803 PF02874 ATP synthase alpha/beta family, beta-barrel domain VSVS05_02803 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VSVS05_02804 PF00231 ATP synthase VSVS05_02805 PF02874 ATP synthase alpha/beta family, beta-barrel domain VSVS05_02805 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VSVS05_02806 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VSVS05_02806 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VSVS05_02807 PF12804 MobA-like NTP transferase domain VSVS05_02807 PF00132 Bacterial transferase hexapeptide (six repeats) VSVS05_02808 PF07690 Major Facilitator Superfamily VSVS05_02809 PF03466 LysR substrate binding domain VSVS05_02809 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_02810 PF00108 Thiolase, N-terminal domain VSVS05_02810 PF02803 Thiolase, C-terminal domain VSVS05_02811 PF00378 Enoyl-CoA hydratase/isomerase VSVS05_02811 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VSVS05_02811 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VSVS05_02812 PF09186 Domain of unknown function (DUF1949) VSVS05_02812 PF01205 Uncharacterized protein family UPF0029 VSVS05_02814 PF02386 Cation transport protein VSVS05_02815 PF12724 Flavodoxin domain VSVS05_02828 PF02537 CrcB-like protein, Camphor Resistance (CrcB) VSVS05_02829 PF01964 Radical SAM ThiC family VSVS05_02829 PF13667 ThiC-associated domain VSVS05_02830 PF02581 Thiamine monophosphate synthase VSVS05_02831 PF00899 ThiF family VSVS05_02832 PF02597 ThiS family VSVS05_02833 PF05690 Thiazole biosynthesis protein ThiG VSVS05_02834 PF04055 Radical SAM superfamily VSVS05_02834 PF06968 Biotin and Thiamin Synthesis associated domain VSVS05_02835 PF01321 Creatinase/Prolidase N-terminal domain VSVS05_02835 PF00557 Metallopeptidase family M24 VSVS05_02835 PF01321 Creatinase/Prolidase N-terminal domain VSVS05_02835 PF00557 Metallopeptidase family M24 VSVS05_02836 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_02836 PF03466 LysR substrate binding domain VSVS05_02837 PF07690 Major Facilitator Superfamily VSVS05_02839 PF01037 Lrp/AsnC ligand binding domain VSVS05_02840 PF00563 EAL domain VSVS05_02840 PF08448 PAS fold VSVS05_02840 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_02841 PF04445 Putative SAM-dependent methyltransferase VSVS05_02842 PF00892 EamA-like transporter family VSVS05_02843 PF00582 Universal stress protein family VSVS05_02844 PF00210 Ferritin-like domain VSVS05_02847 PF00356 Bacterial regulatory proteins, lacI family VSVS05_02847 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VSVS05_02848 PF00920 Dehydratase family VSVS05_02849 PF01202 Shikimate kinase VSVS05_02850 PF02447 GntP family permease VSVS05_02851 PF01081 KDPG and KHG aldolase VSVS05_02853 PF02646 RmuC family VSVS05_02854 PF01209 ubiE/COQ5 methyltransferase family VSVS05_02855 PF02036 SCP-2 sterol transfer family VSVS05_02856 PF03109 ABC1 family VSVS05_02858 PF02416 mttA/Hcf106 family VSVS05_02859 PF00902 Sec-independent protein translocase protein (TatC) VSVS05_02860 PF01026 TatD related DNase VSVS05_02861 PF00490 Delta-aminolevulinic acid dehydratase VSVS05_02862 PF01612 3'-5' exonuclease VSVS05_02862 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VSVS05_02862 PF01367 5'-3' exonuclease, C-terminal SAM fold VSVS05_02862 PF00476 DNA polymerase family A VSVS05_02863 PF01926 50S ribosome-binding GTPase VSVS05_02864 PF00034 Cytochrome c VSVS05_02866 PF04220 Der GTPase activator (YihI) VSVS05_02868 PF06969 HemN C-terminal domain VSVS05_02868 PF04055 Radical SAM superfamily VSVS05_02869 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_02869 PF03466 LysR substrate binding domain VSVS05_02870 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain VSVS05_02870 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain VSVS05_02871 PF04380 Membrane fusogenic activity VSVS05_02872 PF00873 AcrB/AcrD/AcrF family VSVS05_02873 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VSVS05_02874 PF00440 Bacterial regulatory proteins, tetR family VSVS05_02875 PF13361 UvrD-like helicase C-terminal domain VSVS05_02875 PF00580 UvrD/REP helicase N-terminal domain VSVS05_02876 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VSVS05_02882 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VSVS05_02882 PF00005 ABC transporter VSVS05_02883 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VSVS05_02885 PF00528 Binding-protein-dependent transport system inner membrane component VSVS05_02885 PF12911 N-terminal TM domain of oligopeptide transport permease C VSVS05_02886 PF01219 Prokaryotic diacylglycerol kinase VSVS05_02887 PF08019 Phosphoethanolamine transferase EptA/EptB VSVS05_02887 PF00884 Sulfatase VSVS05_02893 PF03793 PASTA domain VSVS05_02893 PF00069 Protein kinase domain VSVS05_02894 PF02743 Cache domain VSVS05_02894 PF00672 HAMP domain VSVS05_02894 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS05_02895 PF01042 Endoribonuclease L-PSP VSVS05_02896 PF01053 Cys/Met metabolism PLP-dependent enzyme VSVS05_02897 PF00375 Sodium:dicarboxylate symporter family VSVS05_02900 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS05_02900 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VSVS05_02901 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ VSVS05_02902 PF01432 Peptidase family M3 VSVS05_02905 PF05114 Protein of unknown function (DUF692) VSVS05_02907 PF00580 UvrD/REP helicase N-terminal domain VSVS05_02907 PF13361 UvrD-like helicase C-terminal domain VSVS05_02908 PF01810 LysE type translocator VSVS05_02909 PF02311 AraC-like ligand binding domain VSVS05_02909 PF12833 Helix-turn-helix domain VSVS05_02910 PF00892 EamA-like transporter family VSVS05_02911 PF09382 RQC domain VSVS05_02911 PF00271 Helicase conserved C-terminal domain VSVS05_02911 PF16124 RecQ zinc-binding VSVS05_02911 PF00570 HRDC domain VSVS05_02911 PF00270 DEAD/DEAH box helicase VSVS05_02913 PF02592 Putative vitamin uptake transporter VSVS05_02914 PF02541 Ppx/GppA phosphatase family VSVS05_02915 PF00270 DEAD/DEAH box helicase VSVS05_02915 PF00271 Helicase conserved C-terminal domain VSVS05_02916 PF00085 Thioredoxin VSVS05_02917 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VSVS05_02917 PF07498 Rho termination factor, N-terminal domain VSVS05_02917 PF07497 Rho termination factor, RNA-binding domain VSVS05_02919 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VSVS05_02921 PF00175 Oxidoreductase NAD-binding domain VSVS05_02929 PF07219 HemY protein N-terminus VSVS05_02930 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase VSVS05_02931 PF02602 Uroporphyrinogen-III synthase HemD VSVS05_02933 PF12633 Adenylate cyclase NT domain VSVS05_02933 PF01295 Adenylate cyclase, class-I VSVS05_02934 PF01491 Frataxin-like domain VSVS05_02935 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VSVS05_02935 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VSVS05_02936 PF01678 Diaminopimelate epimerase VSVS05_02938 PF00589 Phage integrase family VSVS05_02938 PF02899 Phage integrase, N-terminal SAM-like domain VSVS05_02939 PF13419 Haloacid dehalogenase-like hydrolase VSVS05_02943 PF12146 Serine aminopeptidase, S33 VSVS05_02944 PF01810 LysE type translocator VSVS05_02945 PF08668 HDOD domain VSVS05_02945 PF00563 EAL domain VSVS05_02946 PF01022 Bacterial regulatory protein, arsR family VSVS05_02947 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VSVS05_02947 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VSVS05_02955 PF01914 MarC family integral membrane protein VSVS05_02958 PF02881 SRP54-type protein, helical bundle domain VSVS05_02958 PF00448 SRP54-type protein, GTPase domain VSVS05_02959 PF00005 ABC transporter VSVS05_02960 PF18075 FtsX extracellular domain VSVS05_02961 PF04542 Sigma-70 region 2 VSVS05_02961 PF00140 Sigma-70 factor, region 1.2 VSVS05_02961 PF04545 Sigma-70, region 4 VSVS05_02962 PF00581 Rhodanese-like domain VSVS05_02963 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease VSVS05_02963 PF01694 Rhomboid family VSVS05_02964 PF03748 Flagellar basal body-associated protein FliL VSVS05_02965 PF04345 Chorismate lyase VSVS05_02967 PF01553 Acyltransferase VSVS05_02968 PF01219 Prokaryotic diacylglycerol kinase VSVS05_02969 PF00717 Peptidase S24-like VSVS05_02969 PF01726 LexA DNA binding domain VSVS05_02971 PF01554 MatE VSVS05_02973 PF00440 Bacterial regulatory proteins, tetR family VSVS05_02975 PF05958 tRNA (Uracil-5-)-methyltransferase VSVS05_02976 PF00593 TonB dependent receptor VSVS05_02976 PF07715 TonB-dependent Receptor Plug Domain VSVS05_02978 PF01177 Asp/Glu/Hydantoin racemase VSVS05_02982 PF00072 Response regulator receiver domain VSVS05_02982 PF00512 His Kinase A (phospho-acceptor) domain VSVS05_02982 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_02982 PF00672 HAMP domain VSVS05_02982 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VSVS05_02982 PF01627 Hpt domain VSVS05_02983 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VSVS05_02984 PF07969 Amidohydrolase family VSVS05_02985 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin VSVS05_02986 PF00127 Copper binding proteins, plastocyanin/azurin family VSVS05_02988 PF03473 MOSC domain VSVS05_02988 PF00111 2Fe-2S iron-sulfur cluster binding domain VSVS05_02988 PF03476 MOSC N-terminal beta barrel domain VSVS05_02988 PF03473 MOSC domain VSVS05_02988 PF00111 2Fe-2S iron-sulfur cluster binding domain VSVS05_02988 PF03476 MOSC N-terminal beta barrel domain VSVS05_02989 PF00892 EamA-like transporter family VSVS05_02991 PF00672 HAMP domain VSVS05_02991 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS05_02994 PF00128 Alpha amylase, catalytic domain VSVS05_03002 PF01256 Carbohydrate kinase VSVS05_03002 PF03853 YjeF-related protein N-terminus VSVS05_03003 PF00478 IMP dehydrogenase / GMP reductase domain VSVS05_03004 PF03412 Peptidase C39 family VSVS05_03004 PF00005 ABC transporter VSVS05_03004 PF00664 ABC transporter transmembrane region VSVS05_03005 PF03412 Peptidase C39 family VSVS05_03005 PF00005 ABC transporter VSVS05_03005 PF00664 ABC transporter transmembrane region VSVS05_03006 PF13533 Biotin-lipoyl like VSVS05_03008 PF00072 Response regulator receiver domain VSVS05_03009 PF17203 Single cache domain 3 VSVS05_03009 PF00989 PAS fold VSVS05_03009 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_03009 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VSVS05_03010 PF00072 Response regulator receiver domain VSVS05_03010 PF12431 Transcriptional regulator VSVS05_03011 PF01970 Tripartite tricarboxylate transporter TctA family VSVS05_03017 PF00939 Sodium:sulfate symporter transmembrane region VSVS05_03021 PF02028 BCCT, betaine/carnitine/choline family transporter VSVS05_03025 PF00005 ABC transporter VSVS05_03025 PF00664 ABC transporter transmembrane region VSVS05_03026 PF00529 HlyD membrane-fusion protein of T1SS VSVS05_03026 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VSVS05_03030 PF00486 Transcriptional regulatory protein, C terminal VSVS05_03030 PF00072 Response regulator receiver domain VSVS05_03031 PF01740 STAS domain VSVS05_03032 PF00483 Nucleotidyl transferase VSVS05_03034 PF07238 PilZ domain VSVS05_03034 PF00535 Glycosyl transferase family 2 VSVS05_03034 PF03552 Cellulose synthase VSVS05_03039 PF00722 Glycosyl hydrolases family 16 VSVS05_03044 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_03044 PF03466 LysR substrate binding domain VSVS05_03045 PF05175 Methyltransferase small domain VSVS05_03046 PF13193 AMP-binding enzyme C-terminal domain VSVS05_03046 PF00501 AMP-binding enzyme VSVS05_03047 PF00351 Biopterin-dependent aromatic amino acid hydroxylase VSVS05_03048 PF01329 Pterin 4 alpha carbinolamine dehydratase VSVS05_03051 PF13419 Haloacid dehalogenase-like hydrolase VSVS05_03052 PF18267 Rubredoxin NAD+ reductase C-terminal domain VSVS05_03052 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VSVS05_03052 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VSVS05_03052 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS05_03052 PF04324 BFD-like [2Fe-2S] binding domain VSVS05_03053 PF13806 Rieske-like [2Fe-2S] domain VSVS05_03055 PF14824 Sirohaem biosynthesis protein central VSVS05_03055 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VSVS05_03055 PF10414 Sirohaem synthase dimerisation region VSVS05_03056 PF01966 HD domain VSVS05_03062 PF03313 Serine dehydratase alpha chain VSVS05_03062 PF03315 Serine dehydratase beta chain VSVS05_03065 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_03066 PF01584 CheW-like domain VSVS05_03066 PF00072 Response regulator receiver domain VSVS05_03068 PF03279 Bacterial lipid A biosynthesis acyltransferase VSVS05_03069 PF00034 Cytochrome c VSVS05_03070 PF01212 Beta-eliminating lyase VSVS05_03072 PF17868 AAA lid domain VSVS05_03072 PF12592 Protein of unknown function (DUF3763) VSVS05_03072 PF07728 AAA domain (dynein-related subfamily) VSVS05_03073 PF05762 VWA domain containing CoxE-like protein VSVS05_03075 PF01047 MarR family VSVS05_03076 PF04237 YjbR VSVS05_03082 PF03590 Aspartate-ammonia ligase VSVS05_03083 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS05_03083 PF00672 HAMP domain VSVS05_03088 PF11756 Nitrous oxide-stimulated promoter VSVS05_03089 PF07690 Major Facilitator Superfamily VSVS05_03090 PF00085 Thioredoxin VSVS05_03091 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VSVS05_03091 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VSVS05_03092 PF12320 Type 5 capsule protein repressor C-terminal domain VSVS05_03092 PF00149 Calcineurin-like phosphoesterase VSVS05_03093 PF13476 AAA domain VSVS05_03094 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_03094 PF00072 Response regulator receiver domain VSVS05_03096 PF00654 Voltage gated chloride channel VSVS05_03097 PF02492 CobW/HypB/UreG, nucleotide-binding domain VSVS05_03097 PF07683 Cobalamin synthesis protein cobW C-terminal domain VSVS05_03098 PF01926 50S ribosome-binding GTPase VSVS05_03100 PF07881 L-fucose isomerase, first N-terminal domain VSVS05_03100 PF07882 L-fucose isomerase, second N-terminal domain VSVS05_03100 PF02952 L-fucose isomerase, C-terminal domain VSVS05_03101 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VSVS05_03101 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VSVS05_03103 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VSVS05_03103 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VSVS05_03104 PF00596 Class II Aldolase and Adducin N-terminal domain VSVS05_03109 PF03830 PTS system sorbose subfamily IIB component VSVS05_03109 PF03610 PTS system fructose IIA component VSVS05_03110 PF03609 PTS system sorbose-specific iic component VSVS05_03111 PF03613 PTS system mannose/fructose/sorbose family IID component VSVS05_03112 PF08220 DeoR-like helix-turn-helix domain VSVS05_03112 PF00455 DeoR C terminal sensor domain VSVS05_03113 PF00872 Transposase, Mutator family VSVS05_03121 PF00075 RNase H VSVS05_03124 PF04002 RadC-like JAB domain VSVS05_03126 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_03126 PF17155 Gammaproteobacterial periplasmic sensor domain VSVS05_03127 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_03127 PF03466 LysR substrate binding domain VSVS05_03128 PF00857 Isochorismatase family VSVS05_03131 PF00549 CoA-ligase VSVS05_03131 PF02629 CoA binding domain VSVS05_03132 PF06545 Protein of unknown function (DUF1116) VSVS05_03133 PF00696 Amino acid kinase family VSVS05_03135 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin VSVS05_03136 PF00155 Aminotransferase class I and II VSVS05_03145 PF00665 Integrase core domain VSVS05_03146 PF01527 Transposase VSVS05_03147 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS05_03149 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS05_03150 PF01584 CheW-like domain VSVS05_03150 PF00072 Response regulator receiver domain VSVS05_03152 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS05_03152 PF08447 PAS fold VSVS05_03153 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS05_03153 PF02743 Cache domain VSVS05_03153 PF00672 HAMP domain VSVS05_03158 PF02384 N-6 DNA Methylase VSVS05_03159 PF01420 Type I restriction modification DNA specificity domain VSVS05_03160 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VSVS05_03160 PF11867 Domain of unknown function (DUF3387) VSVS05_03160 PF18766 SWI2/SNF2 ATPase VSVS05_03166 PF00293 NUDIX domain VSVS05_03168 PF00589 Phage integrase family VSVS05_03168 PF13356 Arm DNA-binding domain VSVS05_03169 PF01810 LysE type translocator VSVS05_03172 PF01966 HD domain VSVS05_03173 PF00563 EAL domain VSVS05_03173 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_03173 PF03707 Bacterial signalling protein N terminal repeat VSVS05_03175 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_03176 PF02652 L-lactate permease VSVS05_03177 PF02754 Cysteine-rich domain VSVS05_03178 PF02589 LUD domain VSVS05_03178 PF11870 Domain of unknown function (DUF3390) VSVS05_03178 PF13183 4Fe-4S dicluster domain VSVS05_03179 PF02589 LUD domain VSVS05_03180 PF03466 LysR substrate binding domain VSVS05_03180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_03181 PF03786 D-mannonate dehydratase (UxuA) VSVS05_03182 PF07729 FCD domain VSVS05_03182 PF00392 Bacterial regulatory proteins, gntR family VSVS05_03183 PF03480 Bacterial extracellular solute-binding protein, family 7 VSVS05_03184 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VSVS05_03185 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VSVS05_03186 PF01232 Mannitol dehydrogenase Rossmann domain VSVS05_03186 PF08125 Mannitol dehydrogenase C-terminal domain VSVS05_03187 PF02614 Glucuronate isomerase VSVS05_03188 PF00294 pfkB family carbohydrate kinase VSVS05_03189 PF01081 KDPG and KHG aldolase VSVS05_03191 PF10688 Bacterial inner membrane protein VSVS05_03192 PF04074 YhcH/YjgK/YiaL VSVS05_03193 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VSVS05_03194 PF00528 Binding-protein-dependent transport system inner membrane component VSVS05_03195 PF00005 ABC transporter VSVS05_03195 PF00571 CBS domain VSVS05_03196 PF00583 Acetyltransferase (GNAT) family VSVS05_03197 PF00202 Aminotransferase class-III VSVS05_03198 PF06339 Ectoine synthase VSVS05_03205 PF10137 Predicted nucleotide-binding protein containing TIR-like domain VSVS05_03228 PF07859 alpha/beta hydrolase fold VSVS05_03255 PF13358 DDE superfamily endonuclease VSVS05_03258 PF05016 ParE toxin of type II toxin-antitoxin system, parDE VSVS05_03270 PF13333 Integrase core domain VSVS05_03270 PF00665 Integrase core domain VSVS05_03270 PF13276 HTH-like domain VSVS05_03272 PF01717 Cobalamin-independent synthase, Catalytic domain VSVS05_03272 PF08267 Cobalamin-independent synthase, N-terminal domain VSVS05_03274 PF01925 Sulfite exporter TauE/SafE VSVS05_03279 PF01966 HD domain VSVS05_03280 PF01043 SecA preprotein cross-linking domain VSVS05_03280 PF07516 SecA Wing and Scaffold domain VSVS05_03280 PF02810 SEC-C motif VSVS05_03280 PF07517 SecA DEAD-like domain VSVS05_03284 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_03284 PF03466 LysR substrate binding domain VSVS05_03286 PF13654 AAA domain VSVS05_03286 PF05362 Lon protease (S16) C-terminal proteolytic domain VSVS05_03287 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VSVS05_03287 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VSVS05_03288 PF08264 Anticodon-binding domain of tRNA VSVS05_03288 PF00133 tRNA synthetases class I (I, L, M and V) VSVS05_03289 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VSVS05_03290 PF00528 Binding-protein-dependent transport system inner membrane component VSVS05_03291 PF00528 Binding-protein-dependent transport system inner membrane component VSVS05_03291 PF12911 N-terminal TM domain of oligopeptide transport permease C VSVS05_03292 PF00005 ABC transporter VSVS05_03292 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VSVS05_03293 PF03707 Bacterial signalling protein N terminal repeat VSVS05_03293 PF00563 EAL domain VSVS05_03293 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_03295 PF01497 Periplasmic binding protein VSVS05_03296 PF01032 FecCD transport family VSVS05_03297 PF01032 FecCD transport family VSVS05_03298 PF00005 ABC transporter VSVS05_03299 PF13411 MerR HTH family regulatory protein VSVS05_03300 PF12833 Helix-turn-helix domain VSVS05_03301 PF07715 TonB-dependent Receptor Plug Domain VSVS05_03301 PF00593 TonB dependent receptor VSVS05_03302 PF00871 Acetokinase family VSVS05_03303 PF00141 Peroxidase VSVS05_03304 PF00270 DEAD/DEAH box helicase VSVS05_03304 PF00271 Helicase conserved C-terminal domain VSVS05_03304 PF00570 HRDC domain VSVS05_03304 PF16124 RecQ zinc-binding VSVS05_03304 PF09382 RQC domain VSVS05_03307 PF02151 UvrB/uvrC motif VSVS05_03307 PF00271 Helicase conserved C-terminal domain VSVS05_03307 PF04851 Type III restriction enzyme, res subunit VSVS05_03307 PF12344 Ultra-violet resistance protein B VSVS05_03307 PF17757 UvrB interaction domain VSVS05_03309 PF05525 Branched-chain amino acid transport protein VSVS05_03313 PF00271 Helicase conserved C-terminal domain VSVS05_03313 PF00270 DEAD/DEAH box helicase VSVS05_03315 PF01554 MatE VSVS05_03316 PF03606 C4-dicarboxylate anaerobic carrier VSVS05_03318 PF01145 SPFH domain / Band 7 family VSVS05_03318 PF16200 C-terminal region of band_7 VSVS05_03320 PF08448 PAS fold VSVS05_03320 PF08447 PAS fold VSVS05_03320 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_03320 PF00563 EAL domain VSVS05_03322 PF04055 Radical SAM superfamily VSVS05_03322 PF13186 Iron-sulfur cluster-binding domain VSVS05_03323 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_03323 PF03466 LysR substrate binding domain VSVS05_03324 PF00884 Sulfatase VSVS05_03334 PF00072 Response regulator receiver domain VSVS05_03334 PF01627 Hpt domain VSVS05_03334 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VSVS05_03334 PF00512 His Kinase A (phospho-acceptor) domain VSVS05_03334 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_03334 PF00672 HAMP domain VSVS05_03338 PF03264 NapC/NirT cytochrome c family, N-terminal region VSVS05_03339 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) VSVS05_03340 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VSVS05_03340 PF00384 Molybdopterin oxidoreductase VSVS05_03340 PF01568 Molydopterin dinucleotide binding domain VSVS05_03342 PF12800 4Fe-4S binding domain VSVS05_03342 PF13187 4Fe-4S dicluster domain VSVS05_03342 PF00037 4Fe-4S binding domain VSVS05_03343 PF00672 HAMP domain VSVS05_03343 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_03343 PF07730 Histidine kinase VSVS05_03343 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term VSVS05_03344 PF00072 Response regulator receiver domain VSVS05_03344 PF00196 Bacterial regulatory proteins, luxR family VSVS05_03345 PF03606 C4-dicarboxylate anaerobic carrier VSVS05_03346 PF00563 EAL domain VSVS05_03349 PF01292 Prokaryotic cytochrome b561 VSVS05_03350 PF04264 YceI-like domain VSVS05_03351 PF01226 Formate/nitrite transporter VSVS05_03352 PF03466 LysR substrate binding domain VSVS05_03352 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_03353 PF06496 Protein of unknown function (DUF1097) VSVS05_03354 PF11398 Protein of unknown function (DUF2813) VSVS05_03355 PF02872 5'-nucleotidase, C-terminal domain VSVS05_03355 PF00149 Calcineurin-like phosphoesterase VSVS05_03357 PF03741 Integral membrane protein TerC family VSVS05_03359 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS05_03359 PF00672 HAMP domain VSVS05_03360 PF03831 PhnA domain VSVS05_03360 PF08274 PhnA Zinc-Ribbon VSVS05_03361 PF17820 PDZ domain VSVS05_03361 PF02163 Peptidase family M50 VSVS05_03363 PF03061 Thioesterase superfamily VSVS05_03365 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VSVS05_03365 PF12793 Sugar transport-related sRNA regulator N-term VSVS05_03367 PF03466 LysR substrate binding domain VSVS05_03367 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_03368 PF13607 Succinyl-CoA ligase like flavodoxin domain VSVS05_03368 PF00583 Acetyltransferase (GNAT) family VSVS05_03368 PF13380 CoA binding domain VSVS05_03369 PF05036 Sporulation related domain VSVS05_03370 PF01820 D-ala D-ala ligase N-terminus VSVS05_03370 PF07478 D-ala D-ala ligase C-terminus VSVS05_03373 PF01253 Translation initiation factor SUI1 VSVS05_03376 PF03701 Uncharacterised protein family (UPF0181) VSVS05_03379 PF00072 Response regulator receiver domain VSVS05_03379 PF00486 Transcriptional regulatory protein, C terminal VSVS05_03382 PF02233 NAD(P) transhydrogenase beta subunit VSVS05_03383 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VSVS05_03383 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch VSVS05_03383 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VSVS05_03386 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_03386 PF07694 5TMR of 5TMR-LYT VSVS05_03388 PF00563 EAL domain VSVS05_03388 PF00360 Phytochrome region VSVS05_03388 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_03388 PF01590 GAF domain VSVS05_03390 PF00005 ABC transporter VSVS05_03390 PF03459 TOBE domain VSVS05_03391 PF00528 Binding-protein-dependent transport system inner membrane component VSVS05_03393 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VSVS05_03393 PF07685 CobB/CobQ-like glutamine amidotransferase domain VSVS05_03396 PF02743 Cache domain VSVS05_03396 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS05_03396 PF00672 HAMP domain VSVS05_03397 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VSVS05_03397 PF00356 Bacterial regulatory proteins, lacI family VSVS05_03398 PF00381 PTS HPr component phosphorylation site VSVS05_03398 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VSVS05_03399 PF00294 pfkB family carbohydrate kinase VSVS05_03400 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VSVS05_03400 PF02378 Phosphotransferase system, EIIC VSVS05_03402 PF00483 Nucleotidyl transferase VSVS05_03403 PF00465 Iron-containing alcohol dehydrogenase VSVS05_03406 PF00072 Response regulator receiver domain VSVS05_03406 PF00512 His Kinase A (phospho-acceptor) domain VSVS05_03406 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_03406 PF01627 Hpt domain VSVS05_03406 PF00672 HAMP domain VSVS05_03407 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VSVS05_03408 PF02142 MGS-like domain VSVS05_03409 PF12462 DNA helicase IV / RNA helicase N terminal VSVS05_03409 PF13361 UvrD-like helicase C-terminal domain VSVS05_03409 PF00580 UvrD/REP helicase N-terminal domain VSVS05_03410 PF12805 FUSC-like inner membrane protein yccS VSVS05_03412 PF01266 FAD dependent oxidoreductase VSVS05_03412 PF16901 C-terminal domain of alpha-glycerophosphate oxidase VSVS05_03414 PF00512 His Kinase A (phospho-acceptor) domain VSVS05_03414 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_03414 PF09308 LuxQ, periplasmic VSVS05_03414 PF00072 Response regulator receiver domain VSVS05_03415 PF13407 Periplasmic binding protein domain VSVS05_03416 PF01541 GIY-YIG catalytic domain VSVS05_03419 PF04363 Protein of unknown function (DUF496) VSVS05_03421 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VSVS05_03421 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VSVS05_03422 PF00691 OmpA family VSVS05_03422 PF05736 OprF membrane domain VSVS05_03424 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VSVS05_03424 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VSVS05_03425 PF08443 RimK-like ATP-grasp domain VSVS05_03425 PF18030 RimK PreATP-grasp domain VSVS05_03426 PF00155 Aminotransferase class I and II VSVS05_03429 PF13597 Anaerobic ribonucleoside-triphosphate reductase VSVS05_03429 PF03477 ATP cone domain VSVS05_03432 PF04143 Sulphur transport VSVS05_03434 PF08212 Lipocalin-like domain VSVS05_03435 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus VSVS05_03435 PF00561 alpha/beta hydrolase fold VSVS05_03437 PF00108 Thiolase, N-terminal domain VSVS05_03437 PF02803 Thiolase, C-terminal domain VSVS05_03438 PF00106 short chain dehydrogenase VSVS05_03439 PF08361 MAATS-type transcriptional repressor, C-terminal region VSVS05_03439 PF00440 Bacterial regulatory proteins, tetR family VSVS05_03440 PF00271 Helicase conserved C-terminal domain VSVS05_03440 PF00270 DEAD/DEAH box helicase VSVS05_03441 PF04336 Acyl carrier protein phosphodiesterase VSVS05_03443 PF03222 Tryptophan/tyrosine permease family VSVS05_03445 PF14579 Helix-hairpin-helix motif VSVS05_03445 PF02811 PHP domain VSVS05_03445 PF00929 Exonuclease VSVS05_03445 PF07733 Bacterial DNA polymerase III alpha NTPase domain VSVS05_03445 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VSVS05_03446 PF02028 BCCT, betaine/carnitine/choline family transporter VSVS05_03447 PF01047 MarR family VSVS05_03448 PF07690 Major Facilitator Superfamily VSVS05_03451 PF01554 MatE VSVS05_03457 PF12704 MacB-like periplasmic core domain VSVS05_03457 PF00005 ABC transporter VSVS05_03457 PF02687 FtsX-like permease family VSVS05_03463 PF00873 AcrB/AcrD/AcrF family VSVS05_03464 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VSVS05_03469 PF09330 D-lactate dehydrogenase, membrane binding VSVS05_03469 PF01565 FAD binding domain VSVS05_03473 PF00270 DEAD/DEAH box helicase VSVS05_03473 PF03880 DbpA RNA binding domain VSVS05_03473 PF00271 Helicase conserved C-terminal domain VSVS05_03474 PF01227 GTP cyclohydrolase I VSVS05_03475 PF03453 MoeA N-terminal region (domain I and II) VSVS05_03475 PF03454 MoeA C-terminal region (domain IV) VSVS05_03475 PF00994 Probable molybdopterin binding domain VSVS05_03476 PF00899 ThiF family VSVS05_03478 PF00581 Rhodanese-like domain VSVS05_03479 PF08329 Chitinase A, N-terminal domain VSVS05_03479 PF00704 Glycosyl hydrolases family 18 VSVS05_03481 PF00923 Transaldolase/Fructose-6-phosphate aldolase VSVS05_03482 PF00456 Transketolase, thiamine diphosphate binding domain VSVS05_03482 PF02780 Transketolase, C-terminal domain VSVS05_03482 PF02779 Transketolase, pyrimidine binding domain VSVS05_03483 PF16363 GDP-mannose 4,6 dehydratase VSVS05_03484 PF03746 LamB/YcsF family VSVS05_03485 PF02682 Carboxyltransferase domain, subdomain C and D VSVS05_03486 PF02626 Carboxyltransferase domain, subdomain A and B VSVS05_03489 PF00005 ABC transporter VSVS05_03490 PF13472 GDSL-like Lipase/Acylhydrolase family VSVS05_03491 PF12241 Trans-2-enoyl-CoA reductase catalytic region VSVS05_03491 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VSVS05_03491 PF07055 Enoyl reductase FAD binding domain VSVS05_03492 PF13188 PAS domain VSVS05_03492 PF03707 Bacterial signalling protein N terminal repeat VSVS05_03492 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_03492 PF00563 EAL domain VSVS05_03494 PF00684 DnaJ central domain VSVS05_03494 PF01556 DnaJ C terminal domain VSVS05_03494 PF00226 DnaJ domain VSVS05_03498 PF13419 Haloacid dehalogenase-like hydrolase VSVS05_03499 PF11849 Domain of unknown function (DUF3369) VSVS05_03502 PF00294 pfkB family carbohydrate kinase VSVS05_03503 PF13419 Haloacid dehalogenase-like hydrolase VSVS05_03504 PF12729 Four helix bundle sensory module for signal transduction VSVS05_03504 PF00672 HAMP domain VSVS05_03504 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS05_03505 PF01661 Macro domain VSVS05_03510 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) VSVS05_03510 PF13181 Tetratricopeptide repeat VSVS05_03511 PF01270 Glycosyl hydrolases family 8 VSVS05_03512 PF03170 Bacterial cellulose synthase subunit VSVS05_03513 PF00535 Glycosyl transferase family 2 VSVS05_03513 PF03552 Cellulose synthase VSVS05_03513 PF07238 PilZ domain VSVS05_03517 PF11658 Cellulose biosynthesis protein BcsG VSVS05_03518 PF00893 Small Multidrug Resistance protein VSVS05_03519 PF03109 ABC1 family VSVS05_03522 PF07694 5TMR of 5TMR-LYT VSVS05_03522 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_03526 PF04076 Bacterial OB fold (BOF) protein VSVS05_03527 PF00486 Transcriptional regulatory protein, C terminal VSVS05_03527 PF00072 Response regulator receiver domain VSVS05_03528 PF16750 Sensor domain of 2-component histidine kinase VSVS05_03528 PF00512 His Kinase A (phospho-acceptor) domain VSVS05_03528 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_03528 PF00672 HAMP domain VSVS05_03529 PF00593 TonB dependent receptor VSVS05_03529 PF07715 TonB-dependent Receptor Plug Domain VSVS05_03530 PF01497 Periplasmic binding protein VSVS05_03532 PF07690 Major Facilitator Superfamily VSVS05_03535 PF02954 Bacterial regulatory protein, Fis family VSVS05_03535 PF00072 Response regulator receiver domain VSVS05_03535 PF14532 Sigma-54 interaction domain VSVS05_03536 PF00672 HAMP domain VSVS05_03536 PF00512 His Kinase A (phospho-acceptor) domain VSVS05_03536 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_03538 PF07690 Major Facilitator Superfamily VSVS05_03539 PF00224 Pyruvate kinase, barrel domain VSVS05_03539 PF02887 Pyruvate kinase, alpha/beta domain VSVS05_03540 PF01268 Formate--tetrahydrofolate ligase VSVS05_03541 PF01641 SelR domain VSVS05_03541 PF01625 Peptide methionine sulfoxide reductase VSVS05_03542 PF13599 Pentapeptide repeats (9 copies) VSVS05_03544 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain VSVS05_03544 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain VSVS05_03545 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VSVS05_03546 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VSVS05_03546 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain VSVS05_03548 PF13006 Insertion element 4 transposase N-terminal VSVS05_03548 PF01609 Transposase DDE domain VSVS05_03550 PF01914 MarC family integral membrane protein VSVS05_03554 PF01758 Sodium Bile acid symporter family VSVS05_03555 PF02378 Phosphotransferase system, EIIC VSVS05_03559 PF01773 Na+ dependent nucleoside transporter N-terminus VSVS05_03559 PF07662 Na+ dependent nucleoside transporter C-terminus VSVS05_03559 PF07670 Nucleoside recognition VSVS05_03560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS05_03560 PF02743 Cache domain VSVS05_03560 PF00672 HAMP domain VSVS05_03564 PF13193 AMP-binding enzyme C-terminal domain VSVS05_03564 PF00501 AMP-binding enzyme VSVS05_03569 PF08240 Alcohol dehydrogenase GroES-like domain VSVS05_03569 PF00107 Zinc-binding dehydrogenase VSVS05_03570 PF00155 Aminotransferase class I and II VSVS05_03572 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_03572 PF03466 LysR substrate binding domain VSVS05_03573 PF02567 Phenazine biosynthesis-like protein VSVS05_03574 PF01177 Asp/Glu/Hydantoin racemase VSVS05_03577 PF03707 Bacterial signalling protein N terminal repeat VSVS05_03577 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_03577 PF00563 EAL domain VSVS05_03578 PF01451 Low molecular weight phosphotyrosine protein phosphatase VSVS05_03581 PF01757 Acyltransferase family VSVS05_03584 PF04932 O-Antigen ligase VSVS05_03585 PF00534 Glycosyl transferases group 1 VSVS05_03585 PF13439 Glycosyltransferase Family 4 VSVS05_03586 PF00535 Glycosyl transferase family 2 VSVS05_03587 PF13439 Glycosyltransferase Family 4 VSVS05_03587 PF00534 Glycosyl transferases group 1 VSVS05_03588 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VSVS05_03588 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VSVS05_03588 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VSVS05_03589 PF00535 Glycosyl transferase family 2 VSVS05_03590 PF13614 AAA domain VSVS05_03590 PF13807 G-rich domain on putative tyrosine kinase VSVS05_03590 PF13614 AAA domain VSVS05_03590 PF02706 Chain length determinant protein VSVS05_03590 PF02706 Chain length determinant protein VSVS05_03590 PF13807 G-rich domain on putative tyrosine kinase VSVS05_03591 PF02563 Polysaccharide biosynthesis/export protein VSVS05_03591 PF10531 SLBB domain VSVS05_03591 PF18412 Outer-membrane lipoprotein Wza C-terminal domain VSVS05_03592 PF02397 Bacterial sugar transferase VSVS05_03593 PF00005 ABC transporter VSVS05_03594 PF00528 Binding-protein-dependent transport system inner membrane component VSVS05_03595 PF00528 Binding-protein-dependent transport system inner membrane component VSVS05_03596 PF12849 PBP superfamily domain VSVS05_03598 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VSVS05_03598 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VSVS05_03599 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VSVS05_03601 PF12833 Helix-turn-helix domain VSVS05_03602 PF01238 Phosphomannose isomerase type I VSVS05_03603 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VSVS05_03603 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VSVS05_03605 PF06445 GyrI-like small molecule binding domain VSVS05_03605 PF12833 Helix-turn-helix domain VSVS05_03611 PF01266 FAD dependent oxidoreductase VSVS05_03613 PF17863 AAA lid domain VSVS05_03613 PF07726 ATPase family associated with various cellular activities (AAA) VSVS05_03614 PF01882 Protein of unknown function DUF58 VSVS05_03616 PF00092 von Willebrand factor type A domain VSVS05_03616 PF07584 Aerotolerance regulator N-terminal VSVS05_03617 PF13519 von Willebrand factor type A domain VSVS05_03620 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_03620 PF17158 Membrane-associated sensor, integral membrane domain VSVS05_03622 PF02566 OsmC-like protein VSVS05_03623 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VSVS05_03625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_03625 PF03466 LysR substrate binding domain VSVS05_03627 PF13520 Amino acid permease VSVS05_03630 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VSVS05_03630 PF00529 HlyD membrane-fusion protein of T1SS VSVS05_03632 PF00171 Aldehyde dehydrogenase family VSVS05_03633 PF00892 EamA-like transporter family VSVS05_03634 PF00069 Protein kinase domain VSVS05_03634 PF03793 PASTA domain VSVS05_03637 PF01609 Transposase DDE domain VSVS05_03637 PF13006 Insertion element 4 transposase N-terminal VSVS05_03639 PF02378 Phosphotransferase system, EIIC VSVS05_03639 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VSVS05_03639 PF00367 phosphotransferase system, EIIB VSVS05_03640 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VSVS05_03642 PF01116 Fructose-bisphosphate aldolase class-II VSVS05_03643 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VSVS05_03643 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VSVS05_03644 PF00294 pfkB family carbohydrate kinase VSVS05_03645 PF08220 DeoR-like helix-turn-helix domain VSVS05_03645 PF00455 DeoR C terminal sensor domain VSVS05_03646 PF01263 Aldose 1-epimerase VSVS05_03647 PF04055 Radical SAM superfamily VSVS05_03651 PF00465 Iron-containing alcohol dehydrogenase VSVS05_03652 PF02734 DAK2 domain VSVS05_03652 PF02733 Dak1 domain VSVS05_03653 PF01055 Glycosyl hydrolases family 31 VSVS05_03654 PF03480 Bacterial extracellular solute-binding protein, family 7 VSVS05_03656 PF03466 LysR substrate binding domain VSVS05_03656 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_03657 PF03466 LysR substrate binding domain VSVS05_03657 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_03658 PF13533 Biotin-lipoyl like VSVS05_03660 PF13006 Insertion element 4 transposase N-terminal VSVS05_03660 PF01609 Transposase DDE domain VSVS05_03662 PF00356 Bacterial regulatory proteins, lacI family VSVS05_03663 PF08244 Glycosyl hydrolases family 32 C terminal VSVS05_03663 PF00251 Glycosyl hydrolases family 32 N-terminal domain VSVS05_03664 PF00367 phosphotransferase system, EIIB VSVS05_03664 PF02378 Phosphotransferase system, EIIC VSVS05_03665 PF00294 pfkB family carbohydrate kinase VSVS05_03666 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_03666 PF00512 His Kinase A (phospho-acceptor) domain VSVS05_03666 PF09308 LuxQ, periplasmic VSVS05_03666 PF00072 Response regulator receiver domain VSVS05_03668 PF03553 Na+/H+ antiporter family VSVS05_03680 PF06463 Molybdenum Cofactor Synthesis C VSVS05_03680 PF04055 Radical SAM superfamily VSVS05_03684 PF01527 Transposase VSVS05_03685 PF13276 HTH-like domain VSVS05_03685 PF00665 Integrase core domain VSVS05_03685 PF13333 Integrase core domain VSVS05_03690 PF01575 MaoC like domain VSVS05_03691 PF12849 PBP superfamily domain VSVS05_03693 PF00440 Bacterial regulatory proteins, tetR family VSVS05_03693 PF13977 BetI-type transcriptional repressor, C-terminal VSVS05_03695 PF03707 Bacterial signalling protein N terminal repeat VSVS05_03695 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_03695 PF00563 EAL domain VSVS05_03696 PF00248 Aldo/keto reductase family VSVS05_03697 PF00793 DAHP synthetase I family VSVS05_03699 PF01040 UbiA prenyltransferase family VSVS05_03700 PF02628 Cytochrome oxidase assembly protein VSVS05_03704 PF00510 Cytochrome c oxidase subunit III VSVS05_03705 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 VSVS05_03706 PF00115 Cytochrome C and Quinol oxidase polypeptide I VSVS05_03707 PF00116 Cytochrome C oxidase subunit II, periplasmic domain VSVS05_03707 PF02790 Cytochrome C oxidase subunit II, transmembrane domain VSVS05_03709 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VSVS05_03709 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VSVS05_03709 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VSVS05_03709 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VSVS05_03710 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VSVS05_03710 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VSVS05_03710 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VSVS05_03710 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VSVS05_03712 PF01810 LysE type translocator VSVS05_03717 PF01557 Fumarylacetoacetate (FAA) hydrolase family VSVS05_03721 PF00155 Aminotransferase class I and II VSVS05_03721 PF00392 Bacterial regulatory proteins, gntR family VSVS05_03722 PF00313 'Cold-shock' DNA-binding domain VSVS05_03724 PF01734 Patatin-like phospholipase VSVS05_03725 PF01470 Pyroglutamyl peptidase VSVS05_03728 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_03729 PF02743 Cache domain VSVS05_03729 PF00672 HAMP domain VSVS05_03729 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS05_03732 PF12843 Putative quorum-sensing-regulated virulence factor VSVS05_03735 PF00768 D-alanyl-D-alanine carboxypeptidase VSVS05_03735 PF07943 Penicillin-binding protein 5, C-terminal domain VSVS05_03737 PF00313 'Cold-shock' DNA-binding domain VSVS05_03740 PF00175 Oxidoreductase NAD-binding domain VSVS05_03740 PF00970 Oxidoreductase FAD-binding domain VSVS05_03740 PF00042 Globin VSVS05_03741 PF00158 Sigma-54 interaction domain VSVS05_03741 PF01590 GAF domain VSVS05_03743 PF13419 Haloacid dehalogenase-like hydrolase VSVS05_03744 PF02525 Flavodoxin-like fold VSVS05_03745 PF02254 TrkA-N domain VSVS05_03745 PF00999 Sodium/hydrogen exchanger family VSVS05_03746 PF01554 MatE VSVS05_03748 PF00892 EamA-like transporter family VSVS05_03749 PF00462 Glutaredoxin VSVS05_03751 PF07690 Major Facilitator Superfamily VSVS05_03752 PF03466 LysR substrate binding domain VSVS05_03752 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_03753 PF00563 EAL domain VSVS05_03753 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_03753 PF08447 PAS fold VSVS05_03753 PF08448 PAS fold VSVS05_03756 PF02540 NAD synthase VSVS05_03757 PF00196 Bacterial regulatory proteins, luxR family VSVS05_03759 PF08669 Glycine cleavage T-protein C-terminal barrel domain VSVS05_03759 PF01571 Aminomethyltransferase folate-binding domain VSVS05_03761 PF01597 Glycine cleavage H-protein VSVS05_03762 PF02347 Glycine cleavage system P-protein VSVS05_03768 PF00440 Bacterial regulatory proteins, tetR family VSVS05_03769 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) VSVS05_03772 PF00589 Phage integrase family VSVS05_03772 PF13495 Phage integrase, N-terminal SAM-like domain VSVS05_03774 PF01632 Ribosomal protein L35 VSVS05_03775 PF00707 Translation initiation factor IF-3, C-terminal domain VSVS05_03775 PF05198 Translation initiation factor IF-3, N-terminal domain VSVS05_03776 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VSVS05_03776 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VSVS05_03776 PF03129 Anticodon binding domain VSVS05_03776 PF02824 TGS domain VSVS05_03777 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS05_03777 PF00672 HAMP domain VSVS05_03777 PF12729 Four helix bundle sensory module for signal transduction VSVS05_03778 PF13609 Gram-negative porin VSVS05_03779 PF01037 Lrp/AsnC ligand binding domain VSVS05_03780 PF01810 LysE type translocator VSVS05_03782 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_03782 PF03466 LysR substrate binding domain VSVS05_03783 PF08240 Alcohol dehydrogenase GroES-like domain VSVS05_03783 PF00107 Zinc-binding dehydrogenase VSVS05_03784 PF00756 Putative esterase VSVS05_03787 PF00849 RNA pseudouridylate synthase VSVS05_03788 PF12464 Maltose acetyltransferase VSVS05_03788 PF14602 Hexapeptide repeat of succinyl-transferase VSVS05_03789 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VSVS05_03789 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS05_03793 PF16326 ABC transporter C-terminal domain VSVS05_03793 PF12848 ABC transporter VSVS05_03793 PF00005 ABC transporter VSVS05_03795 PF01734 Patatin-like phospholipase VSVS05_03797 PF00376 MerR family regulatory protein VSVS05_03797 PF09278 MerR, DNA binding VSVS05_03798 PF00486 Transcriptional regulatory protein, C terminal VSVS05_03798 PF00072 Response regulator receiver domain VSVS05_03799 PF08521 Two-component sensor kinase N-terminal VSVS05_03799 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_03799 PF00512 His Kinase A (phospho-acceptor) domain VSVS05_03800 PF01547 Bacterial extracellular solute-binding protein VSVS05_03803 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VSVS05_03803 PF00128 Alpha amylase, catalytic domain VSVS05_03804 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_03811 PF01965 DJ-1/PfpI family VSVS05_03816 PF16657 Maltogenic Amylase, C-terminal domain VSVS05_03816 PF00128 Alpha amylase, catalytic domain VSVS05_03820 PF02355 Protein export membrane protein VSVS05_03820 PF13721 SecD export protein N-terminal TM region VSVS05_03820 PF07549 SecD/SecF GG Motif VSVS05_03821 PF07549 SecD/SecF GG Motif VSVS05_03821 PF02355 Protein export membrane protein VSVS05_03822 PF00171 Aldehyde dehydrogenase family VSVS05_03823 PF13302 Acetyltransferase (GNAT) domain VSVS05_03830 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_03830 PF07694 5TMR of 5TMR-LYT VSVS05_03831 PF03616 Sodium/glutamate symporter VSVS05_03832 PF09905 DNA-binding protein VF530 VSVS05_03833 PF12848 ABC transporter VSVS05_03833 PF00005 ABC transporter VSVS05_03835 PF12833 Helix-turn-helix domain VSVS05_03835 PF12852 Cupin VSVS05_03839 PF04205 FMN-binding domain VSVS05_03839 PF00890 FAD binding domain VSVS05_03842 PF00892 EamA-like transporter family VSVS05_03845 PF13533 Biotin-lipoyl like VSVS05_03846 PF07690 Major Facilitator Superfamily VSVS05_03847 PF02253 Phospholipase A1 VSVS05_03850 PF03466 LysR substrate binding domain VSVS05_03850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_03854 PF00392 Bacterial regulatory proteins, gntR family VSVS05_03854 PF07702 UTRA domain VSVS05_03859 PF08402 TOBE domain VSVS05_03859 PF00005 ABC transporter VSVS05_03862 PF00155 Aminotransferase class I and II VSVS05_03863 PF01497 Periplasmic binding protein VSVS05_03863 PF12833 Helix-turn-helix domain VSVS05_03864 PF07660 Secretin and TonB N terminus short domain VSVS05_03864 PF07715 TonB-dependent Receptor Plug Domain VSVS05_03864 PF00593 TonB dependent receptor VSVS05_03868 PF00563 EAL domain VSVS05_03868 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_03868 PF03707 Bacterial signalling protein N terminal repeat VSVS05_03869 PF03313 Serine dehydratase alpha chain VSVS05_03873 PF01161 Phosphatidylethanolamine-binding protein VSVS05_03877 PF03458 UPF0126 domain VSVS05_03878 PF13358 DDE superfamily endonuclease VSVS05_03879 PF00282 Pyridoxal-dependent decarboxylase conserved domain VSVS05_03880 PF04960 Glutaminase VSVS05_03881 PF13520 Amino acid permease VSVS05_03882 PF00271 Helicase conserved C-terminal domain VSVS05_03882 PF00270 DEAD/DEAH box helicase VSVS05_03883 PF01773 Na+ dependent nucleoside transporter N-terminus VSVS05_03883 PF07662 Na+ dependent nucleoside transporter C-terminus VSVS05_03883 PF07670 Nucleoside recognition VSVS05_03884 PF03466 LysR substrate binding domain VSVS05_03884 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_03886 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VSVS05_03886 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VSVS05_03886 PF01276 Orn/Lys/Arg decarboxylase, major domain VSVS05_03887 PF13520 Amino acid permease VSVS05_03889 PF12793 Sugar transport-related sRNA regulator N-term VSVS05_03889 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VSVS05_03891 PF00528 Binding-protein-dependent transport system inner membrane component VSVS05_03892 PF00005 ABC transporter VSVS05_03892 PF00571 CBS domain VSVS05_03898 PF00797 N-acetyltransferase VSVS05_03903 PF00465 Iron-containing alcohol dehydrogenase VSVS05_03904 PF01238 Phosphomannose isomerase type I VSVS05_03905 PF02378 Phosphotransferase system, EIIC VSVS05_03905 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VSVS05_03905 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VSVS05_03906 PF00128 Alpha amylase, catalytic domain VSVS05_03907 PF09261 Alpha mannosidase middle domain VSVS05_03907 PF01074 Glycosyl hydrolases family 38 N-terminal domain VSVS05_03907 PF07748 Glycosyl hydrolases family 38 C-terminal domain VSVS05_03908 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VSVS05_03909 PF01418 Helix-turn-helix domain, rpiR family VSVS05_03909 PF01380 SIS domain VSVS05_03913 PF01554 MatE VSVS05_03914 PF01209 ubiE/COQ5 methyltransferase family VSVS05_03916 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_03916 PF03466 LysR substrate binding domain VSVS05_03917 PF14503 YhfZ C-terminal domain VSVS05_03917 PF14502 Helix-turn-helix domain VSVS05_03919 PF02126 Phosphotriesterase family VSVS05_03920 PF10941 Protein of unknown function DUF2620 VSVS05_03921 PF10797 Protein of unknown function VSVS05_03922 PF01168 Alanine racemase, N-terminal domain VSVS05_03923 PF01676 Metalloenzyme superfamily VSVS05_03925 PF03475 3-alpha domain VSVS05_03925 PF03473 MOSC domain VSVS05_03927 PF02001 Protein of unknown function DUF134 VSVS05_03930 PF00929 Exonuclease VSVS05_03930 PF14480 DNA polymerase III polC-type N-terminus I VSVS05_03930 PF11490 DNA polymerase III polC-type N-terminus II VSVS05_03930 PF07733 Bacterial DNA polymerase III alpha NTPase domain VSVS05_03930 PF02811 PHP domain VSVS05_03930 PF14579 Helix-hairpin-helix motif VSVS05_03930 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VSVS05_03931 PF00672 HAMP domain VSVS05_03931 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS05_03936 PF02743 Cache domain VSVS05_03936 PF00672 HAMP domain VSVS05_03936 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS05_03937 PF04542 Sigma-70 region 2 VSVS05_03937 PF08281 Sigma-70, region 4 VSVS05_03943 PF00583 Acetyltransferase (GNAT) family VSVS05_03945 PF00356 Bacterial regulatory proteins, lacI family VSVS05_03946 PF03480 Bacterial extracellular solute-binding protein, family 7 VSVS05_03948 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VSVS05_03949 PF00294 pfkB family carbohydrate kinase VSVS05_03950 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VSVS05_03950 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VSVS05_03951 PF01081 KDPG and KHG aldolase VSVS05_03952 PF04074 YhcH/YjgK/YiaL VSVS05_03953 PF01569 PAP2 superfamily VSVS05_03954 PF08543 Phosphomethylpyrimidine kinase VSVS05_03955 PF03466 LysR substrate binding domain VSVS05_03955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_03959 PF01872 RibD C-terminal domain VSVS05_03978 PF00293 NUDIX domain VSVS05_03979 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VSVS05_03983 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VSVS05_03984 PF07007 Lysozyme inhibitor LprI VSVS05_03990 PF07690 Major Facilitator Superfamily VSVS05_03992 PF02901 Pyruvate formate lyase-like VSVS05_03992 PF01228 Glycine radical VSVS05_03993 PF00072 Response regulator receiver domain VSVS05_03993 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_03995 PF05127 Helicase VSVS05_03995 PF13718 GNAT acetyltransferase 2 VSVS05_03996 PF02195 ParB-like nuclease domain VSVS05_03996 PF08775 ParB family VSVS05_03997 PF13614 AAA domain VSVS05_03997 PF18607 ParA helix turn helix domain VSVS05_04000 PF00005 ABC transporter VSVS05_04000 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VSVS05_04001 PF00005 ABC transporter VSVS05_04001 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VSVS05_04004 PF01709 Transcriptional regulator VSVS05_04006 PF13533 Biotin-lipoyl like VSVS05_04007 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_04007 PF03466 LysR substrate binding domain VSVS05_04011 PF05656 Protein of unknown function (DUF805) VSVS05_04012 PF00672 HAMP domain VSVS05_04012 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS05_04012 PF17200 Single Cache domain 2 VSVS05_04014 PF10928 Protein of unknown function (DUF2810) VSVS05_04015 PF00196 Bacterial regulatory proteins, luxR family VSVS05_04021 PF00455 DeoR C terminal sensor domain VSVS05_04021 PF08220 DeoR-like helix-turn-helix domain VSVS05_04024 PF00465 Iron-containing alcohol dehydrogenase VSVS05_04025 PF13419 Haloacid dehalogenase-like hydrolase VSVS05_04026 PF00923 Transaldolase/Fructose-6-phosphate aldolase VSVS05_04027 PF02779 Transketolase, pyrimidine binding domain VSVS05_04027 PF02780 Transketolase, C-terminal domain VSVS05_04027 PF00456 Transketolase, thiamine diphosphate binding domain VSVS05_04028 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VSVS05_04029 PF01546 Peptidase family M20/M25/M40 VSVS05_04030 PF02378 Phosphotransferase system, EIIC VSVS05_04030 PF00367 phosphotransferase system, EIIB VSVS05_04032 PF03222 Tryptophan/tyrosine permease family VSVS05_04033 PF03222 Tryptophan/tyrosine permease family VSVS05_04034 PF06628 Catalase-related immune-responsive VSVS05_04034 PF00199 Catalase VSVS05_04039 PF01979 Amidohydrolase family VSVS05_04040 PF00480 ROK family VSVS05_04041 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase VSVS05_04042 PF03480 Bacterial extracellular solute-binding protein, family 7 VSVS05_04043 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VSVS05_04044 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VSVS05_04045 PF00701 Dihydrodipicolinate synthetase family VSVS05_04046 PF01418 Helix-turn-helix domain, rpiR family VSVS05_04046 PF01380 SIS domain VSVS05_04047 PF01344 Kelch motif VSVS05_04048 PF07646 Kelch motif VSVS05_04049 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_04049 PF03466 LysR substrate binding domain VSVS05_04050 PF08803 Putative mono-oxygenase ydhR VSVS05_04054 PF00285 Citrate synthase, C-terminal domain VSVS05_04055 PF00330 Aconitase family (aconitate hydratase) VSVS05_04055 PF00694 Aconitase C-terminal domain VSVS05_04056 PF04303 PrpF protein VSVS05_04057 PF16177 Acetyl-coenzyme A synthetase N-terminus VSVS05_04057 PF00501 AMP-binding enzyme VSVS05_04057 PF13193 AMP-binding enzyme C-terminal domain VSVS05_04060 PF09905 DNA-binding protein VF530 VSVS05_04061 PF00529 HlyD membrane-fusion protein of T1SS VSVS05_04061 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VSVS05_04062 PF00873 AcrB/AcrD/AcrF family VSVS05_04065 PF00302 Chloramphenicol acetyltransferase VSVS05_04067 PF08274 PhnA Zinc-Ribbon VSVS05_04067 PF03831 PhnA domain VSVS05_04076 PF03466 LysR substrate binding domain VSVS05_04076 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_04077 PF00080 Copper/zinc superoxide dismutase (SODC) VSVS05_04080 PF03150 Di-haem cytochrome c peroxidase VSVS05_04080 PF00034 Cytochrome c VSVS05_04083 PF00005 ABC transporter VSVS05_04084 PF02653 Branched-chain amino acid transport system / permease component VSVS05_04085 PF13358 DDE superfamily endonuclease VSVS05_04086 PF02653 Branched-chain amino acid transport system / permease component VSVS05_04087 PF02653 Branched-chain amino acid transport system / permease component VSVS05_04088 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VSVS05_04088 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VSVS05_04090 PF13006 Insertion element 4 transposase N-terminal VSVS05_04090 PF01609 Transposase DDE domain VSVS05_04094 PF00232 Glycosyl hydrolase family 1 VSVS05_04095 PF02378 Phosphotransferase system, EIIC VSVS05_04095 PF00367 phosphotransferase system, EIIB VSVS05_04096 PF02112 cAMP phosphodiesterases class-II VSVS05_04097 PF00561 alpha/beta hydrolase fold VSVS05_04098 PF00704 Glycosyl hydrolases family 18 VSVS05_04099 PF00704 Glycosyl hydrolases family 18 VSVS05_04101 PF00881 Nitroreductase family VSVS05_04102 PF17874 MalT-like TPR region VSVS05_04102 PF00196 Bacterial regulatory proteins, luxR family VSVS05_04103 PF00343 Carbohydrate phosphorylase VSVS05_04104 PF02446 4-alpha-glucanotransferase VSVS05_04105 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VSVS05_04105 PF00128 Alpha amylase, catalytic domain VSVS05_04105 PF02806 Alpha amylase, C-terminal all-beta domain VSVS05_04106 PF01124 MAPEG family VSVS05_04110 PF12697 Alpha/beta hydrolase family VSVS05_04111 PF00939 Sodium:sulfate symporter transmembrane region VSVS05_04113 PF00491 Arginase family VSVS05_04114 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VSVS05_04114 PF17810 Arginine decarboxylase helical bundle domain VSVS05_04114 PF17944 Arginine decarboxylase C-terminal helical extension VSVS05_04116 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_04116 PF03466 LysR substrate binding domain VSVS05_04118 PF12833 Helix-turn-helix domain VSVS05_04118 PF00730 HhH-GPD superfamily base excision DNA repair protein VSVS05_04118 PF02805 Metal binding domain of Ada VSVS05_04118 PF06029 AlkA N-terminal domain VSVS05_04119 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain VSVS05_04119 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VSVS05_04121 PF00270 DEAD/DEAH box helicase VSVS05_04121 PF00271 Helicase conserved C-terminal domain VSVS05_04123 PF03600 Citrate transporter VSVS05_04124 PF07670 Nucleoside recognition VSVS05_04125 PF07670 Nucleoside recognition VSVS05_04126 PF01546 Peptidase family M20/M25/M40 VSVS05_04126 PF07687 Peptidase dimerisation domain VSVS05_04127 PF06803 Protein of unknown function (DUF1232) VSVS05_04128 PF00375 Sodium:dicarboxylate symporter family VSVS05_04130 PF01209 ubiE/COQ5 methyltransferase family VSVS05_04134 PF01047 MarR family VSVS05_04137 PF00472 RF-1 domain VSVS05_04138 PF00561 alpha/beta hydrolase fold VSVS05_04140 PF00175 Oxidoreductase NAD-binding domain VSVS05_04140 PF00970 Oxidoreductase FAD-binding domain VSVS05_04143 PF06942 GlpM protein VSVS05_04146 PF00375 Sodium:dicarboxylate symporter family VSVS05_04147 PF03193 RsgA GTPase VSVS05_04149 PF02630 SCO1/SenC VSVS05_04152 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VSVS05_04153 PF00005 ABC transporter VSVS05_04153 PF00664 ABC transporter transmembrane region VSVS05_04153 PF03412 Peptidase C39 family VSVS05_04156 PF00529 HlyD membrane-fusion protein of T1SS VSVS05_04157 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VSVS05_04157 PF00529 HlyD membrane-fusion protein of T1SS VSVS05_04158 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region VSVS05_04158 PF01243 Pyridoxamine 5'-phosphate oxidase VSVS05_04160 PF03781 Sulfatase-modifying factor enzyme 1 VSVS05_04162 PF12833 Helix-turn-helix domain VSVS05_04163 PF01619 Proline dehydrogenase VSVS05_04163 PF18327 Proline utilization A proline dehydrogenase N-terminal domain VSVS05_04163 PF14850 DNA-binding domain of Proline dehydrogenase VSVS05_04163 PF00171 Aldehyde dehydrogenase family VSVS05_04165 PF00474 Sodium:solute symporter family VSVS05_04167 PF01037 Lrp/AsnC ligand binding domain VSVS05_04169 PF00664 ABC transporter transmembrane region VSVS05_04169 PF00005 ABC transporter VSVS05_04171 PF07238 PilZ domain VSVS05_04171 PF12945 Flagellar protein YcgR VSVS05_04172 PF13302 Acetyltransferase (GNAT) domain VSVS05_04175 PF12558 ATP-binding cassette cobalt transporter VSVS05_04175 PF00005 ABC transporter VSVS05_04176 PF07155 ECF-type riboflavin transporter, S component VSVS05_04177 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VSVS05_04177 PF00529 HlyD membrane-fusion protein of T1SS VSVS05_04178 PF11742 Protein of unknown function (DUF3302) VSVS05_04179 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_04182 PF01048 Phosphorylase superfamily VSVS05_04183 PF08349 Protein of unknown function (DUF1722) VSVS05_04184 PF13411 MerR HTH family regulatory protein VSVS05_04185 PF03441 FAD binding domain of DNA photolyase VSVS05_04185 PF00875 DNA photolyase VSVS05_04186 PF17969 L,D-transpeptidase C-terminal domain VSVS05_04186 PF01476 LysM domain VSVS05_04186 PF03734 L,D-transpeptidase catalytic domain VSVS05_04187 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 VSVS05_04188 PF02028 BCCT, betaine/carnitine/choline family transporter VSVS05_04200 PF03466 LysR substrate binding domain VSVS05_04200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_04201 PF00132 Bacterial transferase hexapeptide (six repeats) VSVS05_04204 PF00005 ABC transporter VSVS05_04206 PF13419 Haloacid dehalogenase-like hydrolase VSVS05_04207 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VSVS05_04207 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VSVS05_04209 PF00270 DEAD/DEAH box helicase VSVS05_04209 PF00271 Helicase conserved C-terminal domain VSVS05_04216 PF01551 Peptidase family M23 VSVS05_04216 PF08525 Opacity-associated protein A N-terminal motif VSVS05_04216 PF01476 LysM domain VSVS05_04218 PF01161 Phosphatidylethanolamine-binding protein VSVS05_04219 PF01098 Cell cycle protein VSVS05_04220 PF00313 'Cold-shock' DNA-binding domain VSVS05_04221 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_04221 PF03466 LysR substrate binding domain VSVS05_04222 PF00578 AhpC/TSA family VSVS05_04224 PF02525 Flavodoxin-like fold VSVS05_04225 PF07662 Na+ dependent nucleoside transporter C-terminus VSVS05_04225 PF07670 Nucleoside recognition VSVS05_04225 PF01773 Na+ dependent nucleoside transporter N-terminus VSVS05_04227 PF01048 Phosphorylase superfamily VSVS05_04228 PF02254 TrkA-N domain VSVS05_04228 PF07885 Ion channel VSVS05_04229 PF01544 CorA-like Mg2+ transporter protein VSVS05_04233 PF07969 Amidohydrolase family VSVS05_04235 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_04235 PF00072 Response regulator receiver domain VSVS05_04236 PF00072 Response regulator receiver domain VSVS05_04236 PF00486 Transcriptional regulatory protein, C terminal VSVS05_04237 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS05_04237 PF00672 HAMP domain VSVS05_04237 PF00512 His Kinase A (phospho-acceptor) domain VSVS05_04238 PF06123 Inner membrane protein CreD VSVS05_04241 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS05_04241 PF18113 Rubredoxin binding C-terminal domain VSVS05_04242 PF00258 Flavodoxin VSVS05_04242 PF00753 Metallo-beta-lactamase superfamily VSVS05_04242 PF00301 Rubredoxin VSVS05_04243 PF00158 Sigma-54 interaction domain VSVS05_04243 PF01590 GAF domain VSVS05_04252 PF00860 Permease family VSVS05_04253 PF01979 Amidohydrolase family VSVS05_04254 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_04254 PF03466 LysR substrate binding domain VSVS05_04255 PF13417 Glutathione S-transferase, N-terminal domain VSVS05_04255 PF00043 Glutathione S-transferase, C-terminal domain VSVS05_04257 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus VSVS05_04257 PF08666 SAF domain VSVS05_04259 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain VSVS05_04259 PF13378 Enolase C-terminal domain-like VSVS05_04260 PF01258 Prokaryotic dksA/traR C4-type zinc finger VSVS05_04261 PF00571 CBS domain VSVS05_04261 PF03471 Transporter associated domain VSVS05_04261 PF01595 Cyclin M transmembrane N-terminal domain VSVS05_04262 PF01595 Cyclin M transmembrane N-terminal domain VSVS05_04262 PF00571 CBS domain VSVS05_04262 PF03471 Transporter associated domain VSVS05_04265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS05_04265 PF03466 LysR substrate binding domain VSVS05_04267 PF00924 Mechanosensitive ion channel VSVS05_04271 PF03707 Bacterial signalling protein N terminal repeat VSVS05_04271 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_04271 PF00563 EAL domain VSVS05_04274 PF00990 Diguanylate cyclase, GGDEF domain VSVS05_04274 PF03707 Bacterial signalling protein N terminal repeat VSVS05_04274 PF00563 EAL domain VSVS05_04278 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VSVS05_04284 PF05025 RbsD / FucU transport protein family VSVS05_04285 PF00294 pfkB family carbohydrate kinase VSVS05_04286 PF00294 pfkB family carbohydrate kinase VSVS05_04287 PF07690 Major Facilitator Superfamily VSVS05_04289 PF00294 pfkB family carbohydrate kinase VSVS05_04291 PF00294 pfkB family carbohydrate kinase VSVS05_04292 PF00356 Bacterial regulatory proteins, lacI family VSVS05_04297 PF00270 DEAD/DEAH box helicase VSVS05_04297 PF03880 DbpA RNA binding domain VSVS05_04297 PF00271 Helicase conserved C-terminal domain VSVS05_04299 PF00773 RNB domain VSVS05_04299 PF08206 Ribonuclease B OB domain VSVS05_04299 PF00575 S1 RNA binding domain VSVS05_04300 PF00773 RNB domain VSVS05_04300 PF00575 S1 RNA binding domain VSVS05_04300 PF08206 Ribonuclease B OB domain VSVS05_04303 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VSVS05_04303 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VSVS05_04305 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VSVS05_04305 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VSVS05_04315 PF04002 RadC-like JAB domain VSVS05_04319 PF00266 Aminotransferase class-V VSVS05_04350 PF00816 H-NS histone family VSVS05_04360 PF00216 Bacterial DNA-binding protein VSVS05_04370 PF00437 Type II/IV secretion system protein VSVS05_04386 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system VSVS05_04389 PF02810 SEC-C motif VSVS05_04389 PF03695 Uncharacterised protein family (UPF0149) VSVS05_04392 PF13358 DDE superfamily endonuclease VSVS05_04398 PF01131 DNA topoisomerase VSVS05_04398 PF01751 Toprim domain VSVS05_04404 PF01848 Hok/gef family VSVS05_04407 PF00872 Transposase, Mutator family VSVS05_04408 PF00239 Resolvase, N terminal domain VSVS05_04408 PF02796 Helix-turn-helix domain of resolvase VSVS05_04413 PF04717 Type VI secretion system, phage-baseplate injector VSVS05_04413 PF16671 Actin cross-linking domain VSVS05_04414 PF05638 Type VI secretion system effector, Hcp VSVS05_04420 PF00004 ATPase family associated with various cellular activities (AAA) VSVS05_04420 PF07724 AAA domain (Cdc48 subfamily) VSVS05_04420 PF17871 AAA lid domain VSVS05_04420 PF10431 C-terminal, D2-small domain, of ClpB protein VSVS05_04433 PF06183 DinI-like family VSVS05_04436 PF04245 37-kD nucleoid-associated bacterial protein VSVS05_04437 PF04245 37-kD nucleoid-associated bacterial protein VSVS05_04449 PF13614 AAA domain VSVS05_04450 PF02195 ParB-like nuclease domain VSVS05_04450 PF17762 HTH domain found in ParB protein VSVS05_04461 PF04002 RadC-like JAB domain