locus-tag class description VSVS12_00001 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS12_00001 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VSVS12_00002 PF01554 MatE VSVS12_00004 PF00717 Peptidase S24-like VSVS12_00004 PF01726 LexA DNA binding domain VSVS12_00005 PF01219 Prokaryotic diacylglycerol kinase VSVS12_00006 PF01553 Acyltransferase VSVS12_00008 PF04345 Chorismate lyase VSVS12_00009 PF03748 Flagellar basal body-associated protein FliL VSVS12_00010 PF01694 Rhomboid family VSVS12_00010 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease VSVS12_00011 PF00581 Rhodanese-like domain VSVS12_00012 PF00140 Sigma-70 factor, region 1.2 VSVS12_00012 PF04542 Sigma-70 region 2 VSVS12_00012 PF04545 Sigma-70, region 4 VSVS12_00013 PF18075 FtsX extracellular domain VSVS12_00014 PF00005 ABC transporter VSVS12_00015 PF02881 SRP54-type protein, helical bundle domain VSVS12_00015 PF00448 SRP54-type protein, GTPase domain VSVS12_00018 PF01914 MarC family integral membrane protein VSVS12_00027 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VSVS12_00027 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VSVS12_00028 PF01022 Bacterial regulatory protein, arsR family VSVS12_00029 PF08668 HDOD domain VSVS12_00029 PF00563 EAL domain VSVS12_00030 PF01810 LysE type translocator VSVS12_00031 PF12146 Serine aminopeptidase, S33 VSVS12_00035 PF13419 Haloacid dehalogenase-like hydrolase VSVS12_00036 PF00589 Phage integrase family VSVS12_00036 PF02899 Phage integrase, N-terminal SAM-like domain VSVS12_00038 PF01678 Diaminopimelate epimerase VSVS12_00039 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VSVS12_00039 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VSVS12_00040 PF01491 Frataxin-like domain VSVS12_00041 PF12633 Adenylate cyclase NT domain VSVS12_00041 PF01295 Adenylate cyclase, class-I VSVS12_00043 PF02602 Uroporphyrinogen-III synthase HemD VSVS12_00044 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase VSVS12_00045 PF07219 HemY protein N-terminus VSVS12_00060 PF00175 Oxidoreductase NAD-binding domain VSVS12_00062 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VSVS12_00064 PF07498 Rho termination factor, N-terminal domain VSVS12_00064 PF07497 Rho termination factor, RNA-binding domain VSVS12_00064 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VSVS12_00065 PF00085 Thioredoxin VSVS12_00066 PF00271 Helicase conserved C-terminal domain VSVS12_00066 PF00270 DEAD/DEAH box helicase VSVS12_00067 PF02541 Ppx/GppA phosphatase family VSVS12_00068 PF02592 Putative vitamin uptake transporter VSVS12_00070 PF09382 RQC domain VSVS12_00070 PF00570 HRDC domain VSVS12_00070 PF16124 RecQ zinc-binding VSVS12_00070 PF00271 Helicase conserved C-terminal domain VSVS12_00070 PF00270 DEAD/DEAH box helicase VSVS12_00071 PF00892 EamA-like transporter family VSVS12_00072 PF12833 Helix-turn-helix domain VSVS12_00072 PF02311 AraC-like ligand binding domain VSVS12_00073 PF01810 LysE type translocator VSVS12_00074 PF13361 UvrD-like helicase C-terminal domain VSVS12_00074 PF00580 UvrD/REP helicase N-terminal domain VSVS12_00076 PF05114 Protein of unknown function (DUF692) VSVS12_00079 PF01432 Peptidase family M3 VSVS12_00080 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ VSVS12_00081 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VSVS12_00081 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS12_00084 PF00375 Sodium:dicarboxylate symporter family VSVS12_00085 PF01053 Cys/Met metabolism PLP-dependent enzyme VSVS12_00086 PF01042 Endoribonuclease L-PSP VSVS12_00087 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_00087 PF00672 HAMP domain VSVS12_00087 PF02743 Cache domain VSVS12_00088 PF03793 PASTA domain VSVS12_00088 PF00069 Protein kinase domain VSVS12_00096 PF00884 Sulfatase VSVS12_00096 PF08019 Phosphoethanolamine transferase EptA/EptB VSVS12_00097 PF01219 Prokaryotic diacylglycerol kinase VSVS12_00098 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_00098 PF12911 N-terminal TM domain of oligopeptide transport permease C VSVS12_00100 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VSVS12_00101 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VSVS12_00101 PF00005 ABC transporter VSVS12_00107 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VSVS12_00108 PF00580 UvrD/REP helicase N-terminal domain VSVS12_00108 PF13361 UvrD-like helicase C-terminal domain VSVS12_00109 PF00440 Bacterial regulatory proteins, tetR family VSVS12_00110 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VSVS12_00111 PF00873 AcrB/AcrD/AcrF family VSVS12_00112 PF04380 Membrane fusogenic activity VSVS12_00113 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain VSVS12_00113 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain VSVS12_00114 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_00114 PF03466 LysR substrate binding domain VSVS12_00115 PF04055 Radical SAM superfamily VSVS12_00115 PF06969 HemN C-terminal domain VSVS12_00117 PF04220 Der GTPase activator (YihI) VSVS12_00119 PF00034 Cytochrome c VSVS12_00120 PF01926 50S ribosome-binding GTPase VSVS12_00121 PF00476 DNA polymerase family A VSVS12_00121 PF01612 3'-5' exonuclease VSVS12_00121 PF01367 5'-3' exonuclease, C-terminal SAM fold VSVS12_00121 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VSVS12_00122 PF00490 Delta-aminolevulinic acid dehydratase VSVS12_00123 PF01026 TatD related DNase VSVS12_00124 PF00902 Sec-independent protein translocase protein (TatC) VSVS12_00125 PF02416 mttA/Hcf106 family VSVS12_00127 PF03109 ABC1 family VSVS12_00128 PF02036 SCP-2 sterol transfer family VSVS12_00129 PF01209 ubiE/COQ5 methyltransferase family VSVS12_00130 PF02646 RmuC family VSVS12_00132 PF01081 KDPG and KHG aldolase VSVS12_00133 PF02447 GntP family permease VSVS12_00134 PF01202 Shikimate kinase VSVS12_00135 PF00920 Dehydratase family VSVS12_00136 PF00356 Bacterial regulatory proteins, lacI family VSVS12_00136 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VSVS12_00139 PF06114 IrrE N-terminal-like domain VSVS12_00143 PF13401 AAA domain VSVS12_00143 PF11426 Tn7 transposition regulator TnsC VSVS12_00148 PF00210 Ferritin-like domain VSVS12_00149 PF00582 Universal stress protein family VSVS12_00150 PF00892 EamA-like transporter family VSVS12_00151 PF04445 Putative SAM-dependent methyltransferase VSVS12_00152 PF08448 PAS fold VSVS12_00152 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_00152 PF00563 EAL domain VSVS12_00153 PF01037 Lrp/AsnC ligand binding domain VSVS12_00155 PF07690 Major Facilitator Superfamily VSVS12_00156 PF03466 LysR substrate binding domain VSVS12_00156 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_00157 PF00557 Metallopeptidase family M24 VSVS12_00157 PF01321 Creatinase/Prolidase N-terminal domain VSVS12_00157 PF00557 Metallopeptidase family M24 VSVS12_00157 PF01321 Creatinase/Prolidase N-terminal domain VSVS12_00158 PF06968 Biotin and Thiamin Synthesis associated domain VSVS12_00158 PF04055 Radical SAM superfamily VSVS12_00159 PF05690 Thiazole biosynthesis protein ThiG VSVS12_00160 PF02597 ThiS family VSVS12_00161 PF00899 ThiF family VSVS12_00162 PF02581 Thiamine monophosphate synthase VSVS12_00163 PF13667 ThiC-associated domain VSVS12_00163 PF01964 Radical SAM ThiC family VSVS12_00164 PF02537 CrcB-like protein, Camphor Resistance (CrcB) VSVS12_00177 PF12724 Flavodoxin domain VSVS12_00178 PF02386 Cation transport protein VSVS12_00179 PF09186 Domain of unknown function (DUF1949) VSVS12_00179 PF01205 Uncharacterized protein family UPF0029 VSVS12_00180 PF00378 Enoyl-CoA hydratase/isomerase VSVS12_00180 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VSVS12_00180 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VSVS12_00181 PF02803 Thiolase, C-terminal domain VSVS12_00181 PF00108 Thiolase, N-terminal domain VSVS12_00182 PF03466 LysR substrate binding domain VSVS12_00182 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_00183 PF07690 Major Facilitator Superfamily VSVS12_00184 PF12804 MobA-like NTP transferase domain VSVS12_00184 PF00132 Bacterial transferase hexapeptide (six repeats) VSVS12_00185 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VSVS12_00185 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VSVS12_00186 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VSVS12_00186 PF02874 ATP synthase alpha/beta family, beta-barrel domain VSVS12_00187 PF00231 ATP synthase VSVS12_00188 PF02874 ATP synthase alpha/beta family, beta-barrel domain VSVS12_00188 PF00306 ATP synthase alpha/beta chain, C terminal domain VSVS12_00188 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VSVS12_00189 PF00213 ATP synthase delta (OSCP) subunit VSVS12_00190 PF00430 ATP synthase B/B' CF(0) VSVS12_00191 PF00137 ATP synthase subunit C VSVS12_00192 PF00119 ATP synthase A chain VSVS12_00193 PF03899 ATP synthase I chain VSVS12_00194 PF02195 ParB-like nuclease domain VSVS12_00194 PF17762 HTH domain found in ParB protein VSVS12_00195 PF13614 AAA domain VSVS12_00197 PF01134 Glucose inhibited division protein A VSVS12_00197 PF13932 GidA associated domain VSVS12_00198 PF00258 Flavodoxin VSVS12_00199 PF01926 50S ribosome-binding GTPase VSVS12_00199 PF10396 GTP-binding protein TrmE N-terminus VSVS12_00199 PF12631 MnmE helical domain VSVS12_00200 PF02096 60Kd inner membrane protein VSVS12_00200 PF14849 YidC periplasmic domain VSVS12_00201 PF01809 Putative membrane protein insertion efficiency factor VSVS12_00202 PF00825 Ribonuclease P VSVS12_00203 PF00468 Ribosomal protein L34 VSVS12_00204 PF00005 ABC transporter VSVS12_00205 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_00206 PF00497 Bacterial extracellular solute-binding proteins, family 3 VSVS12_00207 PF11638 DnaA N-terminal domain VSVS12_00207 PF00308 Bacterial dnaA protein VSVS12_00207 PF08299 Bacterial dnaA protein helix-turn-helix VSVS12_00208 PF02767 DNA polymerase III beta subunit, central domain VSVS12_00208 PF02768 DNA polymerase III beta subunit, C-terminal domain VSVS12_00208 PF00712 DNA polymerase III beta subunit, N-terminal domain VSVS12_00209 PF02463 RecF/RecN/SMC N terminal domain VSVS12_00210 PF01751 Toprim domain VSVS12_00210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_00210 PF18053 DNA gyrase B subunit insert domain VSVS12_00210 PF00986 DNA gyrase B subunit, carboxyl terminus VSVS12_00210 PF00204 DNA gyrase B VSVS12_00211 PF00011 Hsp20/alpha crystallin family VSVS12_00212 PF00155 Aminotransferase class I and II VSVS12_00213 PF02092 Glycyl-tRNA synthetase beta subunit VSVS12_00213 PF05746 DALR anticodon binding domain VSVS12_00214 PF02091 Glycyl-tRNA synthetase alpha subunit VSVS12_00215 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VSVS12_00217 PF01206 Sulfurtransferase TusA VSVS12_00218 PF03466 LysR substrate binding domain VSVS12_00218 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_00219 PF00107 Zinc-binding dehydrogenase VSVS12_00219 PF08240 Alcohol dehydrogenase GroES-like domain VSVS12_00220 PF00585 C-terminal regulatory domain of Threonine dehydratase VSVS12_00220 PF00291 Pyridoxal-phosphate dependent enzyme VSVS12_00221 PF00920 Dehydratase family VSVS12_00222 PF01063 Amino-transferase class IV VSVS12_00224 PF00205 Thiamine pyrophosphate enzyme, central domain VSVS12_00224 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VSVS12_00224 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VSVS12_00225 PF01078 Magnesium chelatase, subunit ChlI VSVS12_00225 PF13335 Magnesium chelatase, subunit ChlI C-terminal VSVS12_00233 PF13335 Magnesium chelatase, subunit ChlI C-terminal VSVS12_00233 PF01078 Magnesium chelatase, subunit ChlI VSVS12_00241 PF01078 Magnesium chelatase, subunit ChlI VSVS12_00241 PF13335 Magnesium chelatase, subunit ChlI C-terminal VSVS12_00243 PF01323 DSBA-like thioredoxin domain VSVS12_00244 PF01636 Phosphotransferase enzyme family VSVS12_00245 PF13746 4Fe-4S dicluster domain VSVS12_00245 PF12801 4Fe-4S binding domain VSVS12_00245 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase VSVS12_00246 PF06288 Protein of unknown function (DUF1040) VSVS12_00247 PF07070 SpoOM protein VSVS12_00248 PF03006 Haemolysin-III related VSVS12_00249 PF02386 Cation transport protein VSVS12_00250 PF02080 TrkA-C domain VSVS12_00250 PF02254 TrkA-N domain VSVS12_00251 PF01189 16S rRNA methyltransferase RsmB/F VSVS12_00251 PF01029 NusB family VSVS12_00252 PF02911 Formyl transferase, C-terminal domain VSVS12_00252 PF00551 Formyl transferase VSVS12_00253 PF01327 Polypeptide deformylase VSVS12_00255 PF17782 DprA winged helix domain VSVS12_00255 PF02481 DNA recombination-mediator protein A VSVS12_00256 PF04361 Protein of unknown function (DUF494) VSVS12_00258 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain VSVS12_00258 PF02222 ATP-grasp domain VSVS12_00259 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain VSVS12_00259 PF02222 ATP-grasp domain VSVS12_00260 PF00731 AIR carboxylase VSVS12_00261 PF01300 Telomere recombination VSVS12_00263 PF08501 Shikimate dehydrogenase substrate binding domain VSVS12_00263 PF01488 Shikimate / quinate 5-dehydrogenase VSVS12_00263 PF18317 Shikimate 5'-dehydrogenase C-terminal domain VSVS12_00264 PF07369 Protein of unknown function (DUF1488) VSVS12_00265 PF00132 Bacterial transferase hexapeptide (six repeats) VSVS12_00273 PF00962 Adenosine/AMP deaminase VSVS12_00274 PF00563 EAL domain VSVS12_00274 PF13188 PAS domain VSVS12_00274 PF03707 Bacterial signalling protein N terminal repeat VSVS12_00274 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_00275 PF00158 Sigma-54 interaction domain VSVS12_00275 PF02954 Bacterial regulatory protein, Fis family VSVS12_00275 PF00072 Response regulator receiver domain VSVS12_00276 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_00276 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_00276 PF00989 PAS fold VSVS12_00277 PF03951 Glutamine synthetase, beta-Grasp domain VSVS12_00277 PF00120 Glutamine synthetase, catalytic domain VSVS12_00283 PF00583 Acetyltransferase (GNAT) family VSVS12_00283 PF09500 Putative thioesterase (yiiD_Cterm) VSVS12_00285 PF01293 Phosphoenolpyruvate carboxykinase VSVS12_00286 PF01430 Hsp33 protein VSVS12_00287 PF01479 S4 domain VSVS12_00288 PF11356 Type II secretion system protein C VSVS12_00289 PF00263 Bacterial type II and III secretion system protein VSVS12_00289 PF03958 Bacterial type II/III secretion system short domain VSVS12_00290 PF00437 Type II/IV secretion system protein VSVS12_00291 PF00482 Type II secretion system (T2SS), protein F VSVS12_00292 PF07963 Prokaryotic N-terminal methylation motif VSVS12_00292 PF08334 Type II secretion system (T2SS), protein G VSVS12_00293 PF12019 Type II transport protein GspH VSVS12_00294 PF02501 Type II secretion system (T2SS), protein I VSVS12_00294 PF07963 Prokaryotic N-terminal methylation motif VSVS12_00295 PF07963 Prokaryotic N-terminal methylation motif VSVS12_00295 PF11612 Type II secretion system (T2SS), protein J VSVS12_00296 PF03934 Type II secretion system (T2SS), protein K VSVS12_00297 PF12693 GspL periplasmic domain VSVS12_00297 PF05134 Type II secretion system (T2SS), protein L VSVS12_00298 PF04612 Type II secretion system (T2SS), protein M VSVS12_00299 PF01203 Type II secretion system (T2SS), protein N VSVS12_00300 PF00672 HAMP domain VSVS12_00300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_00300 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_00301 PF00072 Response regulator receiver domain VSVS12_00301 PF00486 Transcriptional regulatory protein, C terminal VSVS12_00302 PF03449 Transcription elongation factor, N-terminal VSVS12_00302 PF01272 Transcription elongation factor, GreA/GreB, C-term VSVS12_00303 PF02627 Carboxymuconolactone decarboxylase family VSVS12_00304 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_00304 PF03466 LysR substrate binding domain VSVS12_00305 PF00575 S1 RNA binding domain VSVS12_00305 PF16921 Tex protein YqgF-like domain VSVS12_00305 PF17674 HHH domain VSVS12_00305 PF09371 Tex-like protein N-terminal domain VSVS12_00307 PF00561 alpha/beta hydrolase fold VSVS12_00308 PF00156 Phosphoribosyl transferase domain VSVS12_00309 PF01106 NifU-like domain VSVS12_00309 PF01521 Iron-sulphur cluster biosynthesis VSVS12_00310 PF00293 NUDIX domain VSVS12_00311 PF00459 Inositol monophosphatase family VSVS12_00312 PF02838 Glycosyl hydrolase family 20, domain 2 VSVS12_00312 PF03173 Putative carbohydrate binding domain VSVS12_00312 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VSVS12_00312 PF00728 Glycosyl hydrolase family 20, catalytic domain VSVS12_00313 PF17191 RecG wedge domain VSVS12_00313 PF00271 Helicase conserved C-terminal domain VSVS12_00313 PF00270 DEAD/DEAH box helicase VSVS12_00314 PF00588 SpoU rRNA Methylase family VSVS12_00314 PF12105 SpoU, rRNA methylase, C-terminal VSVS12_00315 PF13291 ACT domain VSVS12_00315 PF04607 Region found in RelA / SpoT proteins VSVS12_00315 PF02824 TGS domain VSVS12_00316 PF01192 RNA polymerase Rpb6 VSVS12_00317 PF00625 Guanylate kinase VSVS12_00319 PF00860 Permease family VSVS12_00321 PF08543 Phosphomethylpyrimidine kinase VSVS12_00322 PF08340 Domain of unknown function (DUF1732) VSVS12_00322 PF03755 YicC-like family, N-terminal region VSVS12_00323 PF01138 3' exoribonuclease family, domain 1 VSVS12_00323 PF03725 3' exoribonuclease family, domain 2 VSVS12_00324 PF00156 Phosphoribosyl transferase domain VSVS12_00325 PF03279 Bacterial lipid A biosynthesis acyltransferase VSVS12_00326 PF00440 Bacterial regulatory proteins, tetR family VSVS12_00327 PF02441 Flavoprotein VSVS12_00327 PF04127 DNA / pantothenate metabolism flavoprotein VSVS12_00328 PF00672 HAMP domain VSVS12_00328 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_00328 PF17200 Single Cache domain 2 VSVS12_00329 PF04002 RadC-like JAB domain VSVS12_00331 PF00471 Ribosomal protein L33 VSVS12_00334 PF01467 Cytidylyltransferase-like VSVS12_00335 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VSVS12_00336 PF00535 Glycosyl transferase family 2 VSVS12_00337 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VSVS12_00338 PF01219 Prokaryotic diacylglycerol kinase VSVS12_00340 PF11893 Domain of unknown function (DUF3413) VSVS12_00340 PF00884 Sulfatase VSVS12_00342 PF02719 Polysaccharide biosynthesis protein VSVS12_00343 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VSVS12_00345 PF00117 Glutamine amidotransferase class-I VSVS12_00346 PF00977 Histidine biosynthesis protein VSVS12_00347 PF02348 Cytidylyltransferase VSVS12_00350 PF03102 NeuB family VSVS12_00350 PF08666 SAF domain VSVS12_00352 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VSVS12_00352 PF00534 Glycosyl transferases group 1 VSVS12_00353 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VSVS12_00354 PF03279 Bacterial lipid A biosynthesis acyltransferase VSVS12_00355 PF01370 NAD dependent epimerase/dehydratase family VSVS12_00356 PF13091 PLD-like domain VSVS12_00358 PF01565 FAD binding domain VSVS12_00358 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VSVS12_00359 PF08279 HTH domain VSVS12_00359 PF03099 Biotin/lipoate A/B protein ligase family VSVS12_00359 PF02237 Biotin protein ligase C terminal domain VSVS12_00361 PF00166 Chaperonin 10 Kd subunit VSVS12_00362 PF00118 TCP-1/cpn60 chaperonin family VSVS12_00363 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_00363 PF05230 MASE2 domain VSVS12_00364 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded VSVS12_00366 PF02219 Methylenetetrahydrofolate reductase VSVS12_00367 PF03447 Homoserine dehydrogenase, NAD binding domain VSVS12_00367 PF00742 Homoserine dehydrogenase VSVS12_00367 PF00696 Amino acid kinase family VSVS12_00368 PF01053 Cys/Met metabolism PLP-dependent enzyme VSVS12_00369 PF01340 Met Apo-repressor, MetJ VSVS12_00370 PF03949 Malic enzyme, NAD binding domain VSVS12_00370 PF00390 Malic enzyme, N-terminal domain VSVS12_00372 PF00270 DEAD/DEAH box helicase VSVS12_00372 PF00271 Helicase conserved C-terminal domain VSVS12_00372 PF17764 3′ DNA-binding domain (3′BD) VSVS12_00372 PF18319 PriA DNA helicase Cys-rich region (CRR) domain VSVS12_00372 PF18074 Primosomal protein N C-terminal domain VSVS12_00373 PF00356 Bacterial regulatory proteins, lacI family VSVS12_00374 PF05036 Sporulation related domain VSVS12_00375 PF02357 Transcription termination factor nusG VSVS12_00376 PF02350 UDP-N-acetylglucosamine 2-epimerase VSVS12_00377 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VSVS12_00377 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VSVS12_00377 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VSVS12_00378 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VSVS12_00378 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VSVS12_00378 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VSVS12_00379 PF01370 NAD dependent epimerase/dehydratase family VSVS12_00384 PF00132 Bacterial transferase hexapeptide (six repeats) VSVS12_00386 PF00795 Carbon-nitrogen hydrolase VSVS12_00386 PF02540 NAD synthase VSVS12_00387 PF00117 Glutamine amidotransferase class-I VSVS12_00388 PF00977 Histidine biosynthesis protein VSVS12_00389 PF02894 Oxidoreductase family, C-terminal alpha/beta domain VSVS12_00389 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VSVS12_00392 PF01370 NAD dependent epimerase/dehydratase family VSVS12_00393 PF02397 Bacterial sugar transferase VSVS12_00394 PF02719 Polysaccharide biosynthesis protein VSVS12_00395 PF16363 GDP-mannose 4,6 dehydratase VSVS12_00406 PF06082 Exopolysaccharide biosynthesis protein YbjH VSVS12_00408 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF VSVS12_00410 PF00227 Proteasome subunit VSVS12_00411 PF07724 AAA domain (Cdc48 subfamily) VSVS12_00411 PF00004 ATPase family associated with various cellular activities (AAA) VSVS12_00412 PF02313 Fumarate reductase subunit D VSVS12_00413 PF02300 Fumarate reductase subunit C VSVS12_00414 PF13085 2Fe-2S iron-sulfur cluster binding domain VSVS12_00414 PF13183 4Fe-4S dicluster domain VSVS12_00415 PF00890 FAD binding domain VSVS12_00415 PF02910 Fumarate reductase flavoprotein C-term VSVS12_00417 PF00152 tRNA synthetases class II (D, K and N) VSVS12_00419 PF00581 Rhodanese-like domain VSVS12_00420 PF02556 Preprotein translocase subunit SecB VSVS12_00421 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VSVS12_00421 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VSVS12_00422 PF00132 Bacterial transferase hexapeptide (six repeats) VSVS12_00422 PF06426 Serine acetyltransferase, N-terminal VSVS12_00424 PF00311 Phosphoenolpyruvate carboxylase VSVS12_00426 PF01118 Semialdehyde dehydrogenase, NAD binding domain VSVS12_00426 PF02774 Semialdehyde dehydrogenase, dimerisation domain VSVS12_00427 PF00696 Amino acid kinase family VSVS12_00428 PF00764 Arginosuccinate synthase VSVS12_00429 PF00583 Acetyltransferase (GNAT) family VSVS12_00429 PF00206 Lyase VSVS12_00429 PF14698 Argininosuccinate lyase C-terminal VSVS12_00430 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS12_00430 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VSVS12_00431 PF00462 Glutaredoxin VSVS12_00431 PF08534 Redoxin VSVS12_00432 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_00432 PF03466 LysR substrate binding domain VSVS12_00433 PF01610 Transposase VSVS12_00433 PF13542 Helix-turn-helix domain of transposase family ISL3 VSVS12_00433 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 VSVS12_00434 PF01610 Transposase VSVS12_00434 PF13542 Helix-turn-helix domain of transposase family ISL3 VSVS12_00434 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 VSVS12_00435 PF17092 Penicillin-binding protein OB-like domain VSVS12_00435 PF00905 Penicillin binding protein transpeptidase domain VSVS12_00435 PF00912 Transglycosylase VSVS12_00440 PF11741 AMIN domain VSVS12_00440 PF03958 Bacterial type II/III secretion system short domain VSVS12_00440 PF00263 Bacterial type II and III secretion system protein VSVS12_00440 PF07660 Secretin and TonB N terminus short domain VSVS12_00441 PF01202 Shikimate kinase VSVS12_00444 PF02086 D12 class N6 adenine-specific DNA methyltransferase VSVS12_00445 PF00834 Ribulose-phosphate 3 epimerase family VSVS12_00446 PF13419 Haloacid dehalogenase-like hydrolase VSVS12_00447 PF00579 tRNA synthetases class I (W and Y) VSVS12_00448 PF00117 Glutamine amidotransferase class-I VSVS12_00449 PF00202 Aminotransferase class-III VSVS12_00450 PF04958 Arginine N-succinyltransferase beta subunit VSVS12_00453 PF13545 Crp-like helix-turn-helix domain VSVS12_00453 PF00027 Cyclic nucleotide-binding domain VSVS12_00455 PF00485 Phosphoribulokinase / Uridine kinase family VSVS12_00456 PF06794 Uncharacterised protein family (UPF0270) VSVS12_00457 PF00561 alpha/beta hydrolase fold VSVS12_00459 PF00005 ABC transporter VSVS12_00459 PF12848 ABC transporter VSVS12_00460 PF02525 Flavodoxin-like fold VSVS12_00461 PF02254 TrkA-N domain VSVS12_00461 PF00999 Sodium/hydrogen exchanger family VSVS12_00462 PF09526 Probable metal-binding protein (DUF2387) VSVS12_00463 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VSVS12_00464 PF01112 Asparaginase VSVS12_00465 PF00709 Adenylosuccinate synthetase VSVS12_00466 PF08238 Sel1 repeat VSVS12_00467 PF01979 Amidohydrolase family VSVS12_00468 PF17876 Cold shock domain VSVS12_00468 PF00773 RNB domain VSVS12_00468 PF00575 S1 RNA binding domain VSVS12_00468 PF08461 Ribonuclease R winged-helix domain VSVS12_00468 PF08206 Ribonuclease B OB domain VSVS12_00469 PF00588 SpoU rRNA Methylase family VSVS12_00469 PF08032 RNA 2'-O ribose methyltransferase substrate binding VSVS12_00470 PF00338 Ribosomal protein S10p/S20e VSVS12_00471 PF00297 Ribosomal protein L3 VSVS12_00473 PF00276 Ribosomal protein L23 VSVS12_00474 PF00181 Ribosomal Proteins L2, RNA binding domain VSVS12_00474 PF03947 Ribosomal Proteins L2, C-terminal domain VSVS12_00475 PF00203 Ribosomal protein S19 VSVS12_00476 PF00237 Ribosomal protein L22p/L17e VSVS12_00477 PF00189 Ribosomal protein S3, C-terminal domain VSVS12_00477 PF07650 KH domain VSVS12_00478 PF00252 Ribosomal protein L16p/L10e VSVS12_00479 PF00831 Ribosomal L29 protein VSVS12_00480 PF00366 Ribosomal protein S17 VSVS12_00481 PF00238 Ribosomal protein L14p/L23e VSVS12_00482 PF00467 KOW motif VSVS12_00482 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 VSVS12_00483 PF00673 ribosomal L5P family C-terminus VSVS12_00483 PF00281 Ribosomal protein L5 VSVS12_00484 PF00253 Ribosomal protein S14p/S29e VSVS12_00485 PF00410 Ribosomal protein S8 VSVS12_00486 PF00347 Ribosomal protein L6 VSVS12_00487 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast VSVS12_00488 PF00333 Ribosomal protein S5, N-terminal domain VSVS12_00488 PF03719 Ribosomal protein S5, C-terminal domain VSVS12_00489 PF00327 Ribosomal protein L30p/L7e VSVS12_00490 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A VSVS12_00491 PF00344 SecY translocase VSVS12_00492 PF00444 Ribosomal protein L36 VSVS12_00493 PF00416 Ribosomal protein S13/S18 VSVS12_00494 PF00411 Ribosomal protein S11 VSVS12_00495 PF00163 Ribosomal protein S4/S9 N-terminal domain VSVS12_00495 PF01479 S4 domain VSVS12_00497 PF01196 Ribosomal protein L17 VSVS12_00499 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VSVS12_00499 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VSVS12_00502 PF13673 Acetyltransferase (GNAT) domain VSVS12_00504 PF02872 5'-nucleotidase, C-terminal domain VSVS12_00504 PF00149 Calcineurin-like phosphoesterase VSVS12_00505 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VSVS12_00505 PF14824 Sirohaem biosynthesis protein central VSVS12_00505 PF10414 Sirohaem synthase dimerisation region VSVS12_00506 PF01507 Phosphoadenosine phosphosulfate reductase family VSVS12_00507 PF00009 Elongation factor Tu GTP binding domain VSVS12_00508 PF03600 Citrate transporter VSVS12_00508 PF02080 TrkA-C domain VSVS12_00511 PF01475 Ferric uptake regulator family VSVS12_00512 PF01207 Dihydrouridine synthase (Dus) VSVS12_00516 PF00175 Oxidoreductase NAD-binding domain VSVS12_00516 PF00258 Flavodoxin VSVS12_00516 PF00667 FAD binding domain VSVS12_00517 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VSVS12_00517 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VSVS12_00532 PF00999 Sodium/hydrogen exchanger family VSVS12_00533 PF02607 B12 binding domain VSVS12_00533 PF02965 Vitamin B12 dependent methionine synthase, activation domain VSVS12_00533 PF00809 Pterin binding enzyme VSVS12_00533 PF02574 Homocysteine S-methyltransferase VSVS12_00533 PF02310 B12 binding domain VSVS12_00534 PF03448 MgtE intracellular N domain VSVS12_00534 PF01769 Divalent cation transporter VSVS12_00534 PF00571 CBS domain VSVS12_00535 PF00381 PTS HPr component phosphorylation site VSVS12_00536 PF03668 P-loop ATPase protein family VSVS12_00537 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VSVS12_00538 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VSVS12_00539 PF04552 Sigma-54, DNA binding domain VSVS12_00539 PF04963 Sigma-54 factor, core binding domain VSVS12_00539 PF00309 Sigma-54 factor, Activator interacting domain (AID) VSVS12_00540 PF12399 Branched-chain amino acid ATP-binding cassette transporter VSVS12_00540 PF00005 ABC transporter VSVS12_00541 PF03968 OstA-like protein VSVS12_00544 PF01380 SIS domain VSVS12_00544 PF00571 CBS domain VSVS12_00545 PF01699 Sodium/calcium exchanger protein VSVS12_00546 PF00005 ABC transporter VSVS12_00547 PF02405 Permease MlaE VSVS12_00548 PF02470 MlaD protein VSVS12_00549 PF05494 MlaC protein VSVS12_00551 PF01722 BolA-like protein VSVS12_00552 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VSVS12_00553 PF01553 Acyltransferase VSVS12_00560 PF00672 HAMP domain VSVS12_00560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_00560 PF17200 Single Cache domain 2 VSVS12_00565 PF01464 Transglycosylase SLT domain VSVS12_00565 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VSVS12_00566 PF04362 Bacterial Fe(2+) trafficking VSVS12_00567 PF00633 Helix-hairpin-helix motif VSVS12_00567 PF14815 NUDIX domain VSVS12_00567 PF00730 HhH-GPD superfamily base excision DNA repair protein VSVS12_00568 PF02390 Putative methyltransferase VSVS12_00569 PF04960 Glutaminase VSVS12_00570 PF04055 Radical SAM superfamily VSVS12_00570 PF06969 HemN C-terminal domain VSVS12_00571 PF01725 Ham1 family VSVS12_00573 PF02594 Uncharacterised ACR, YggU family COG1872 VSVS12_00574 PF02325 YGGT family VSVS12_00575 PF14748 Pyrroline-5-carboxylate reductase dimerisation VSVS12_00575 PF03807 NADP oxidoreductase coenzyme F420-dependent VSVS12_00576 PF01168 Alanine racemase, N-terminal domain VSVS12_00577 PF00437 Type II/IV secretion system protein VSVS12_00578 PF00437 Type II/IV secretion system protein VSVS12_00579 PF01842 ACT domain VSVS12_00579 PF00696 Amino acid kinase family VSVS12_00580 PF00266 Aminotransferase class-V VSVS12_00582 PF17755 UvrA DNA-binding domain VSVS12_00582 PF00005 ABC transporter VSVS12_00582 PF17760 UvrA interaction domain VSVS12_00583 PF00483 Nucleotidyl transferase VSVS12_00584 PF00196 Bacterial regulatory proteins, luxR family VSVS12_00585 PF00436 Single-strand binding protein family VSVS12_00586 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_00586 PF17157 Gammaproteobacterial periplasmic sensor domain VSVS12_00586 PF00563 EAL domain VSVS12_00590 PF00263 Bacterial type II and III secretion system protein VSVS12_00590 PF03958 Bacterial type II/III secretion system short domain VSVS12_00591 PF01471 Putative peptidoglycan binding domain VSVS12_00591 PF13401 AAA domain VSVS12_00593 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VSVS12_00593 PF00437 Type II/IV secretion system protein VSVS12_00595 PF00437 Type II/IV secretion system protein VSVS12_00596 PF00482 Type II secretion system (T2SS), protein F VSVS12_00598 PF00114 Pilin (bacterial filament) VSVS12_00598 PF07963 Prokaryotic N-terminal methylation motif VSVS12_00599 PF00114 Pilin (bacterial filament) VSVS12_00599 PF07963 Prokaryotic N-terminal methylation motif VSVS12_00607 PF04085 rod shape-determining protein MreC VSVS12_00608 PF04093 rod shape-determining protein MreD VSVS12_00609 PF02545 Maf-like protein VSVS12_00610 PF10150 Ribonuclease E/G family VSVS12_00610 PF00575 S1 RNA binding domain VSVS12_00612 PF00795 Carbon-nitrogen hydrolase VSVS12_00613 PF01523 Putative modulator of DNA gyrase VSVS12_00616 PF06877 Regulator of ribonuclease activity B VSVS12_00626 PF00582 Universal stress protein family VSVS12_00629 PF01316 Arginine repressor, DNA binding domain VSVS12_00629 PF02863 Arginine repressor, C-terminal domain VSVS12_00630 PF00056 lactate/malate dehydrogenase, NAD binding domain VSVS12_00630 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VSVS12_00632 PF00348 Polyprenyl synthetase VSVS12_00633 PF00829 Ribosomal prokaryotic L21 protein VSVS12_00634 PF01016 Ribosomal L27 protein VSVS12_00635 PF01926 50S ribosome-binding GTPase VSVS12_00635 PF01018 GTP1/OBG VSVS12_00636 PF06738 Putative threonine/serine exporter VSVS12_00637 PF12821 Threonine/Serine exporter, ThrE VSVS12_00638 PF00186 Dihydrofolate reductase VSVS12_00639 PF00149 Calcineurin-like phosphoesterase VSVS12_00640 PF04379 ApaG domain VSVS12_00641 PF00398 Ribosomal RNA adenine dimethylase VSVS12_00642 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VSVS12_00643 PF09312 SurA N-terminal domain VSVS12_00644 PF04453 LPS transport system D VSVS12_00644 PF03968 OstA-like protein VSVS12_00645 PF05099 Tellurite resistance protein TerB VSVS12_00645 PF00226 DnaJ domain VSVS12_00646 PF01042 Endoribonuclease L-PSP VSVS12_00647 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VSVS12_00647 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VSVS12_00648 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VSVS12_00648 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VSVS12_00649 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VSVS12_00649 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VSVS12_00650 PF13638 PIN domain VSVS12_00650 PF02562 PhoH-like protein VSVS12_00651 PF00271 Helicase conserved C-terminal domain VSVS12_00651 PF18337 RapA N-terminal Tudor like domain VSVS12_00651 PF18339 RapA N-terminal Tudor like domain 1 VSVS12_00651 PF12137 RNA polymerase recycling family C-terminal VSVS12_00651 PF00176 SNF2 family N-terminal domain VSVS12_00652 PF00849 RNA pseudouridylate synthase VSVS12_00653 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VSVS12_00653 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VSVS12_00654 PF10458 Valyl tRNA synthetase tRNA binding arm VSVS12_00654 PF08264 Anticodon-binding domain of tRNA VSVS12_00654 PF00133 tRNA synthetases class I (I, L, M and V) VSVS12_00655 PF04364 DNA polymerase III chi subunit, HolC VSVS12_00656 PF00883 Cytosol aminopeptidase family, catalytic domain VSVS12_00656 PF02789 Cytosol aminopeptidase family, N-terminal domain VSVS12_00657 PF03739 Lipopolysaccharide export system permease LptF/LptG VSVS12_00658 PF03739 Lipopolysaccharide export system permease LptF/LptG VSVS12_00660 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain VSVS12_00660 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain VSVS12_00661 PF01510 N-acetylmuramoyl-L-alanine amidase VSVS12_00662 PF00258 Flavodoxin VSVS12_00663 PF00589 Phage integrase family VSVS12_00663 PF02899 Phage integrase, N-terminal SAM-like domain VSVS12_00664 PF13098 Thioredoxin-like domain VSVS12_00664 PF10411 Disulfide bond isomerase protein N-terminus VSVS12_00665 PF17768 RecJ OB domain VSVS12_00665 PF02272 DHHA1 domain VSVS12_00665 PF01368 DHH family VSVS12_00666 PF07729 FCD domain VSVS12_00666 PF00392 Bacterial regulatory proteins, gntR family VSVS12_00667 PF17831 Pyruvate dehydrogenase E1 component middle domain VSVS12_00667 PF00456 Transketolase, thiamine diphosphate binding domain VSVS12_00668 PF00364 Biotin-requiring enzyme VSVS12_00668 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VSVS12_00668 PF02817 e3 binding domain VSVS12_00669 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VSVS12_00669 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS12_00670 PF00440 Bacterial regulatory proteins, tetR family VSVS12_00671 PF00156 Phosphoribosyl transferase domain VSVS12_00672 PF00484 Carbonic anhydrase VSVS12_00673 PF00916 Sulfate permease family VSVS12_00673 PF01740 STAS domain VSVS12_00675 PF00916 Sulfate permease family VSVS12_00675 PF01740 STAS domain VSVS12_00676 PF00005 ABC transporter VSVS12_00677 PF01061 ABC-2 type transporter VSVS12_00678 PF02569 Pantoate-beta-alanine ligase VSVS12_00679 PF02548 Ketopantoate hydroxymethyltransferase VSVS12_00680 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VSVS12_00681 PF12626 Polymerase A arginine-rich C-terminus VSVS12_00681 PF01743 Poly A polymerase head domain VSVS12_00681 PF12627 Probable RNA and SrmB- binding site of polymerase A VSVS12_00682 PF00749 tRNA synthetases class I (E and Q), catalytic domain VSVS12_00683 PF01258 Prokaryotic dksA/traR C4-type zinc finger VSVS12_00684 PF03749 Sugar fermentation stimulation protein RE domain VSVS12_00684 PF17746 SfsA N-terminal OB domain VSVS12_00685 PF08482 ATP-dependent helicase C-terminal VSVS12_00685 PF00271 Helicase conserved C-terminal domain VSVS12_00685 PF04408 Helicase associated domain (HA2) VSVS12_00685 PF00270 DEAD/DEAH box helicase VSVS12_00686 PF00912 Transglycosylase VSVS12_00686 PF00905 Penicillin binding protein transpeptidase domain VSVS12_00686 PF14814 Bifunctional transglycosylase second domain VSVS12_00687 PF01734 Patatin-like phospholipase VSVS12_00688 PF00330 Aconitase family (aconitate hydratase) VSVS12_00688 PF06434 Aconitate hydratase 2 N-terminus VSVS12_00688 PF11791 Aconitate B N-terminal domain VSVS12_00689 PF02595 Glycerate kinase family VSVS12_00690 PF02447 GntP family permease VSVS12_00691 PF13556 PucR C-terminal helix-turn-helix domain VSVS12_00691 PF17853 GGDEF-like domain VSVS12_00691 PF05651 Putative sugar diacid recognition VSVS12_00692 PF06062 Uncharacterised protein family (UPF0231) VSVS12_00693 PF00543 Nitrogen regulatory protein P-II VSVS12_00694 PF00909 Ammonium Transporter Family VSVS12_00695 PF13416 Bacterial extracellular solute-binding protein VSVS12_00696 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_00697 PF08402 TOBE domain VSVS12_00697 PF00005 ABC transporter VSVS12_00699 PF01965 DJ-1/PfpI family VSVS12_00700 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VSVS12_00700 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VSVS12_00700 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VSVS12_00700 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VSVS12_00701 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain VSVS12_00701 PF06165 Glycosyltransferase family 36 VSVS12_00702 PF00728 Glycosyl hydrolase family 20, catalytic domain VSVS12_00702 PF02838 Glycosyl hydrolase family 20, domain 2 VSVS12_00703 PF01869 BadF/BadG/BcrA/BcrD ATPase family VSVS12_00705 PF00005 ABC transporter VSVS12_00705 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VSVS12_00706 PF00005 ABC transporter VSVS12_00706 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VSVS12_00707 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_00707 PF12911 N-terminal TM domain of oligopeptide transport permease C VSVS12_00708 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_00709 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VSVS12_00710 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_00710 PF00072 Response regulator receiver domain VSVS12_00710 PF00497 Bacterial extracellular solute-binding proteins, family 3 VSVS12_00710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_00711 PF05175 Methyltransferase small domain VSVS12_00711 PF08468 Methyltransferase small domain N-terminal VSVS12_00712 PF01594 AI-2E family transporter VSVS12_00714 PF00202 Aminotransferase class-III VSVS12_00716 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VSVS12_00716 PF00529 HlyD membrane-fusion protein of T1SS VSVS12_00717 PF00873 AcrB/AcrD/AcrF family VSVS12_00718 PF08525 Opacity-associated protein A N-terminal motif VSVS12_00718 PF01476 LysM domain VSVS12_00718 PF01551 Peptidase family M23 VSVS12_00719 PF00579 tRNA synthetases class I (W and Y) VSVS12_00721 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family VSVS12_00722 PF13609 Gram-negative porin VSVS12_00723 PF01272 Transcription elongation factor, GreA/GreB, C-term VSVS12_00723 PF03449 Transcription elongation factor, N-terminal VSVS12_00724 PF01985 CRS1 / YhbY (CRM) domain VSVS12_00725 PF01728 FtsJ-like methyltransferase VSVS12_00726 PF01434 Peptidase family M41 VSVS12_00726 PF17862 AAA+ lid domain VSVS12_00726 PF00004 ATPase family associated with various cellular activities (AAA) VSVS12_00726 PF06480 FtsH Extracellular VSVS12_00727 PF00809 Pterin binding enzyme VSVS12_00728 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VSVS12_00728 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VSVS12_00728 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VSVS12_00728 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VSVS12_00729 PF03840 Preprotein translocase SecG subunit VSVS12_00732 PF02576 RimP N-terminal domain VSVS12_00732 PF17384 RimP C-terminal SH3 domain VSVS12_00733 PF13184 NusA-like KH domain VSVS12_00733 PF00575 S1 RNA binding domain VSVS12_00733 PF08529 NusA N-terminal domain VSVS12_00734 PF04760 Translation initiation factor IF-2, N-terminal region VSVS12_00734 PF08364 Bacterial translation initiation factor IF-2 associated region VSVS12_00734 PF11987 Translation-initiation factor 2 VSVS12_00734 PF00009 Elongation factor Tu GTP binding domain VSVS12_00735 PF02033 Ribosome-binding factor A VSVS12_00736 PF16198 tRNA pseudouridylate synthase B C-terminal domain VSVS12_00736 PF01509 TruB family pseudouridylate synthase (N terminal domain) VSVS12_00736 PF09157 Pseudouridine synthase II TruB, C-terminal VSVS12_00739 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS12_00739 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VSVS12_00740 PF04898 Glutamate synthase central domain VSVS12_00740 PF01493 GXGXG motif VSVS12_00740 PF00310 Glutamine amidotransferases class-II VSVS12_00740 PF01645 Conserved region in glutamate synthase VSVS12_00741 PF04055 Radical SAM superfamily VSVS12_00741 PF16199 Radical_SAM C-terminal domain VSVS12_00742 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_00742 PF00360 Phytochrome region VSVS12_00742 PF01590 GAF domain VSVS12_00742 PF00563 EAL domain VSVS12_00743 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_00743 PF18415 Histidine kinase receptor ArcB trans-membrane domain VSVS12_00743 PF01627 Hpt domain VSVS12_00743 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_00743 PF00072 Response regulator receiver domain VSVS12_00743 PF00989 PAS fold VSVS12_00747 PF00248 Aldo/keto reductase family VSVS12_00749 PF02976 DNA mismatch repair enzyme MutH VSVS12_00751 PF05524 PEP-utilising enzyme, N-terminal VSVS12_00751 PF02896 PEP-utilising enzyme, TIM barrel domain VSVS12_00751 PF00391 PEP-utilising enzyme, mobile domain VSVS12_00751 PF01590 GAF domain VSVS12_00754 PF00303 Thymidylate synthase VSVS12_00755 PF02690 Na+/Pi-cotransporter VSVS12_00756 PF03466 LysR substrate binding domain VSVS12_00756 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_00757 PF01022 Bacterial regulatory protein, arsR family VSVS12_00758 PF01649 Ribosomal protein S20 VSVS12_00759 PF03023 Lipid II flippase MurJ VSVS12_00760 PF06574 FAD synthetase VSVS12_00760 PF01687 Riboflavin kinase VSVS12_00761 PF08264 Anticodon-binding domain of tRNA VSVS12_00761 PF00133 tRNA synthetases class I (I, L, M and V) VSVS12_00761 PF06827 Zinc finger found in FPG and IleRS VSVS12_00762 PF01252 Signal peptidase (SPase) II VSVS12_00763 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VSVS12_00764 PF02401 LytB protein VSVS12_00765 PF02554 Carbon starvation protein CstA VSVS12_00767 PF03702 Anhydro-N-acetylmuramic acid kinase VSVS12_00768 PF00933 Glycosyl hydrolase family 3 N terminal domain VSVS12_00770 PF00072 Response regulator receiver domain VSVS12_00770 PF04397 LytTr DNA-binding domain VSVS12_00771 PF07694 5TMR of 5TMR-LYT VSVS12_00771 PF06580 Histidine kinase VSVS12_00772 PF00793 DAHP synthetase I family VSVS12_00773 PF01817 Chorismate mutase type II VSVS12_00773 PF02153 Prephenate dehydrogenase VSVS12_00774 PF04225 Opacity-associated protein A LysM-like domain VSVS12_00774 PF01551 Peptidase family M23 VSVS12_00775 PF07238 PilZ domain VSVS12_00776 PF12848 ABC transporter VSVS12_00776 PF00005 ABC transporter VSVS12_00777 PF14718 Soluble lytic murein transglycosylase L domain VSVS12_00777 PF01464 Transglycosylase SLT domain VSVS12_00778 PF01371 Trp repressor protein VSVS12_00779 PF01931 Protein of unknown function DUF84 VSVS12_00780 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_00780 PF00563 EAL domain VSVS12_00781 PF13416 Bacterial extracellular solute-binding protein VSVS12_00782 PF01817 Chorismate mutase type II VSVS12_00782 PF00800 Prephenate dehydratase VSVS12_00783 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VSVS12_00784 PF01464 Transglycosylase SLT domain VSVS12_00787 PF13525 Outer membrane lipoprotein VSVS12_00788 PF00849 RNA pseudouridylate synthase VSVS12_00788 PF01479 S4 domain VSVS12_00790 PF17871 AAA lid domain VSVS12_00790 PF07724 AAA domain (Cdc48 subfamily) VSVS12_00790 PF00004 ATPase family associated with various cellular activities (AAA) VSVS12_00790 PF10431 C-terminal, D2-small domain, of ClpB protein VSVS12_00790 PF02861 Clp amino terminal domain, pathogenicity island component VSVS12_00798 PF13358 DDE superfamily endonuclease VSVS12_00804 PF00459 Inositol monophosphatase family VSVS12_00805 PF00588 SpoU rRNA Methylase family VSVS12_00806 PF02082 Transcriptional regulator VSVS12_00807 PF00266 Aminotransferase class-V VSVS12_00808 PF01592 NifU-like N terminal domain VSVS12_00809 PF01521 Iron-sulphur cluster biosynthesis VSVS12_00810 PF00226 DnaJ domain VSVS12_00810 PF07743 HSCB C-terminal oligomerisation domain VSVS12_00811 PF00012 Hsp70 protein VSVS12_00812 PF00111 2Fe-2S iron-sulfur cluster binding domain VSVS12_00813 PF04384 Iron-sulphur cluster assembly VSVS12_00814 PF12404 Peptidase VSVS12_00814 PF00883 Cytosol aminopeptidase family, catalytic domain VSVS12_00815 PF00334 Nucleoside diphosphate kinase VSVS12_00816 PF00266 Aminotransferase class-V VSVS12_00817 PF01965 DJ-1/PfpI family VSVS12_00818 PF02558 Ketopantoate reductase PanE/ApbA VSVS12_00818 PF08546 Ketopantoate reductase PanE/ApbA C terminal VSVS12_00819 PF03502 Nucleoside-specific channel-forming protein, Tsx VSVS12_00821 PF04545 Sigma-70, region 4 VSVS12_00821 PF04542 Sigma-70 region 2 VSVS12_00823 PF07690 Major Facilitator Superfamily VSVS12_00824 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VSVS12_00826 PF05175 Methyltransferase small domain VSVS12_00827 PF01722 BolA-like protein VSVS12_00828 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) VSVS12_00828 PF11973 NQRA C-terminal domain VSVS12_00829 PF03116 NQR2, RnfD, RnfE family VSVS12_00830 PF04205 FMN-binding domain VSVS12_00831 PF02508 Rnf-Nqr subunit, membrane protein VSVS12_00832 PF02508 Rnf-Nqr subunit, membrane protein VSVS12_00833 PF00111 2Fe-2S iron-sulfur cluster binding domain VSVS12_00833 PF00175 Oxidoreductase NAD-binding domain VSVS12_00833 PF00970 Oxidoreductase FAD-binding domain VSVS12_00834 PF02424 ApbE family VSVS12_00836 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_00836 PF00072 Response regulator receiver domain VSVS12_00837 PF11798 IMS family HHH motif VSVS12_00837 PF11799 impB/mucB/samB family C-terminal domain VSVS12_00837 PF00817 impB/mucB/samB family VSVS12_00838 PF03449 Transcription elongation factor, N-terminal VSVS12_00838 PF01272 Transcription elongation factor, GreA/GreB, C-term VSVS12_00840 PF00209 Sodium:neurotransmitter symporter family VSVS12_00841 PF13006 Insertion element 4 transposase N-terminal VSVS12_00841 PF01609 Transposase DDE domain VSVS12_00843 PF08443 RimK-like ATP-grasp domain VSVS12_00843 PF18030 RimK PreATP-grasp domain VSVS12_00844 PF18030 RimK PreATP-grasp domain VSVS12_00844 PF08443 RimK-like ATP-grasp domain VSVS12_00845 PF07687 Peptidase dimerisation domain VSVS12_00845 PF01546 Peptidase family M20/M25/M40 VSVS12_00846 PF00860 Permease family VSVS12_00847 PF00156 Phosphoribosyl transferase domain VSVS12_00849 PF07417 Sigma factor-binding transcriptional regulator Crl VSVS12_00850 PF01472 PUA domain VSVS12_00850 PF00696 Amino acid kinase family VSVS12_00851 PF00171 Aldehyde dehydrogenase family VSVS12_00852 PF03477 ATP cone domain VSVS12_00853 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VSVS12_00853 PF01872 RibD C-terminal domain VSVS12_00854 PF00677 Lumazine binding domain VSVS12_00855 PF00925 GTP cyclohydrolase II VSVS12_00855 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VSVS12_00856 PF00885 6,7-dimethyl-8-ribityllumazine synthase VSVS12_00858 PF02769 AIR synthase related protein, C-terminal domain VSVS12_00858 PF00586 AIR synthase related protein, N-terminal domain VSVS12_00859 PF04608 Phosphatidylglycerophosphatase A VSVS12_00860 PF01527 Transposase VSVS12_00861 PF13276 HTH-like domain VSVS12_00861 PF00665 Integrase core domain VSVS12_00861 PF13333 Integrase core domain VSVS12_00862 PF11944 Protein of unknown function (DUF3461) VSVS12_00863 PF01909 Nucleotidyltransferase domain VSVS12_00863 PF01966 HD domain VSVS12_00863 PF08335 GlnD PII-uridylyltransferase VSVS12_00863 PF01842 ACT domain VSVS12_00864 PF00557 Metallopeptidase family M24 VSVS12_00865 PF00318 Ribosomal protein S2 VSVS12_00866 PF00889 Elongation factor TS VSVS12_00867 PF00696 Amino acid kinase family VSVS12_00868 PF01765 Ribosome recycling factor VSVS12_00869 PF01255 Putative undecaprenyl diphosphate synthase VSVS12_00871 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain VSVS12_00871 PF13288 DXP reductoisomerase C-terminal domain VSVS12_00871 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase VSVS12_00872 PF02163 Peptidase family M50 VSVS12_00872 PF17820 PDZ domain VSVS12_00873 PF07244 Surface antigen variable number repeat VSVS12_00873 PF01103 Surface antigen VSVS12_00874 PF03938 Outer membrane protein (OmpH-like) VSVS12_00875 PF00132 Bacterial transferase hexapeptide (six repeats) VSVS12_00875 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VSVS12_00876 PF07977 FabA-like domain VSVS12_00877 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 VSVS12_00877 PF00132 Bacterial transferase hexapeptide (six repeats) VSVS12_00878 PF02684 Lipid-A-disaccharide synthetase VSVS12_00879 PF01351 Ribonuclease HII VSVS12_00880 PF14579 Helix-hairpin-helix motif VSVS12_00880 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VSVS12_00880 PF07733 Bacterial DNA polymerase III alpha NTPase domain VSVS12_00880 PF02811 PHP domain VSVS12_00880 PF01336 OB-fold nucleic acid binding domain VSVS12_00881 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit VSVS12_00882 PF01171 PP-loop family VSVS12_00882 PF09179 TilS substrate binding domain VSVS12_00882 PF11734 TilS substrate C-terminal domain VSVS12_00883 PF00543 Nitrogen regulatory protein P-II VSVS12_00884 PF03372 Endonuclease/Exonuclease/phosphatase family VSVS12_00886 PF01476 LysM domain VSVS12_00886 PF01464 Transglycosylase SLT domain VSVS12_00888 PF08241 Methyltransferase domain VSVS12_00890 PF00929 Exonuclease VSVS12_00892 PF13006 Insertion element 4 transposase N-terminal VSVS12_00892 PF01609 Transposase DDE domain VSVS12_00893 PF02770 Acyl-CoA dehydrogenase, middle domain VSVS12_00893 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VSVS12_00893 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VSVS12_00893 PF09317 Domain of unknown function (DUF1974) VSVS12_00894 PF13580 SIS domain VSVS12_00895 PF13230 Glutamine amidotransferases class-II VSVS12_00897 PF03129 Anticodon binding domain VSVS12_00897 PF04073 Aminoacyl-tRNA editing domain VSVS12_00897 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VSVS12_00898 PF18389 TrmO C-terminal domain VSVS12_00898 PF01980 tRNA-methyltransferase O VSVS12_00899 PF01197 Ribosomal protein L31 VSVS12_00900 PF00444 Ribosomal protein L36 VSVS12_00901 PF03180 NLPA lipoprotein VSVS12_00902 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_00903 PF00005 ABC transporter VSVS12_00903 PF09383 NIL domain VSVS12_00907 PF00464 Serine hydroxymethyltransferase VSVS12_00909 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family VSVS12_00909 PF04055 Radical SAM superfamily VSVS12_00910 PF03099 Biotin/lipoate A/B protein ligase family VSVS12_00911 PF04359 Protein of unknown function (DUF493) VSVS12_00912 PF00768 D-alanyl-D-alanine carboxypeptidase VSVS12_00912 PF07943 Penicillin-binding protein 5, C-terminal domain VSVS12_00913 PF03330 Lytic transglycolase VSVS12_00913 PF05036 Sporulation related domain VSVS12_00914 PF01098 Cell cycle protein VSVS12_00915 PF00905 Penicillin binding protein transpeptidase domain VSVS12_00915 PF03717 Penicillin-binding Protein dimerisation domain VSVS12_00916 PF02590 Predicted SPOUT methyltransferase VSVS12_00918 PF06144 DNA polymerase III, delta subunit VSVS12_00918 PF14840 Processivity clamp loader gamma complex DNA pol III C-term VSVS12_00919 PF04390 Lipopolysaccharide-assembly VSVS12_00921 PF07295 Zinc-ribbon containing domain VSVS12_00922 PF00795 Carbon-nitrogen hydrolase VSVS12_00923 PF03471 Transporter associated domain VSVS12_00923 PF00571 CBS domain VSVS12_00924 PF02130 Uncharacterized protein family UPF0054 VSVS12_00925 PF02562 PhoH-like protein VSVS12_00926 PF00919 Uncharacterized protein family UPF0004 VSVS12_00926 PF01938 TRAM domain VSVS12_00926 PF04055 Radical SAM superfamily VSVS12_00927 PF01494 FAD binding domain VSVS12_00928 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VSVS12_00929 PF05524 PEP-utilising enzyme, N-terminal VSVS12_00929 PF02896 PEP-utilising enzyme, TIM barrel domain VSVS12_00929 PF00391 PEP-utilising enzyme, mobile domain VSVS12_00931 PF00381 PTS HPr component phosphorylation site VSVS12_00932 PF00291 Pyridoxal-phosphate dependent enzyme VSVS12_00934 PF04354 ZipA, C-terminal FtsZ-binding domain VSVS12_00935 PF12826 Helix-hairpin-helix motif VSVS12_00935 PF03119 NAD-dependent DNA ligase C4 zinc finger domain VSVS12_00935 PF03120 NAD-dependent DNA ligase OB-fold domain VSVS12_00935 PF00533 BRCA1 C Terminus (BRCT) domain VSVS12_00935 PF01653 NAD-dependent DNA ligase adenylation domain VSVS12_00936 PF13609 Gram-negative porin VSVS12_00939 PF01957 NfeD-like C-terminal, partner-binding VSVS12_00940 PF16200 C-terminal region of band_7 VSVS12_00940 PF01145 SPFH domain / Band 7 family VSVS12_00941 PF00085 Thioredoxin VSVS12_00942 PF00106 short chain dehydrogenase VSVS12_00943 PF08338 Domain of unknown function (DUF1731) VSVS12_00943 PF01370 NAD dependent epimerase/dehydratase family VSVS12_00944 PF07556 Protein of unknown function (DUF1538) VSVS12_00945 PF07556 Protein of unknown function (DUF1538) VSVS12_00948 PF12850 Calcineurin-like phosphoesterase superfamily domain VSVS12_00951 PF17323 Trans-membrane regulatory protein ToxS VSVS12_00952 PF00486 Transcriptional regulatory protein, C terminal VSVS12_00953 PF00183 Hsp90 protein VSVS12_00953 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_00954 PF05191 Adenylate kinase, active site lid VSVS12_00955 PF00762 Ferrochelatase VSVS12_00958 PF00403 Heavy-metal-associated domain VSVS12_00959 PF13609 Gram-negative porin VSVS12_00961 PF00749 tRNA synthetases class I (E and Q), catalytic domain VSVS12_00962 PF01389 OmpA-like transmembrane domain VSVS12_00962 PF00691 OmpA family VSVS12_00969 PF04316 Anti-sigma-28 factor, FlgM VSVS12_00971 PF00072 Response regulator receiver domain VSVS12_00971 PF01584 CheW-like domain VSVS12_00972 PF03705 CheR methyltransferase, all-alpha domain VSVS12_00972 PF01739 CheR methyltransferase, SAM binding domain VSVS12_00973 PF00460 Flagella basal body rod protein VSVS12_00974 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VSVS12_00974 PF00460 Flagella basal body rod protein VSVS12_00975 PF03963 Flagellar hook capping protein - N-terminal region VSVS12_00975 PF13861 FlgD Tudor-like domain VSVS12_00975 PF13860 FlgD Ig-like domain VSVS12_00976 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VSVS12_00976 PF00460 Flagella basal body rod protein VSVS12_00976 PF07559 Flagellar basal body protein FlaE VSVS12_00977 PF00460 Flagella basal body rod protein VSVS12_00977 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VSVS12_00978 PF00460 Flagella basal body rod protein VSVS12_00978 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VSVS12_00979 PF02107 Flagellar L-ring protein VSVS12_00981 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VSVS12_00981 PF10135 Rod binding protein VSVS12_00982 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VSVS12_00982 PF07196 Flagellin hook IN motif VSVS12_00983 PF00669 Bacterial flagellin N-terminal helical region VSVS12_00984 PF07196 Flagellin hook IN motif VSVS12_00984 PF00669 Bacterial flagellin N-terminal helical region VSVS12_00984 PF00700 Bacterial flagellin C-terminal helical region VSVS12_00985 PF07196 Flagellin hook IN motif VSVS12_00985 PF00669 Bacterial flagellin N-terminal helical region VSVS12_00985 PF00700 Bacterial flagellin C-terminal helical region VSVS12_01002 PF06071 Protein of unknown function (DUF933) VSVS12_01002 PF01926 50S ribosome-binding GTPase VSVS12_01003 PF01195 Peptidyl-tRNA hydrolase VSVS12_01004 PF14572 Phosphoribosyl synthetase-associated domain VSVS12_01004 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VSVS12_01006 PF03550 Outer membrane lipoprotein LolB VSVS12_01008 PF03462 PCRF domain VSVS12_01008 PF00472 RF-1 domain VSVS12_01009 PF17827 PrmC N-terminal domain VSVS12_01009 PF13847 Methyltransferase domain VSVS12_01010 PF04247 Invasion gene expression up-regulator, SirB VSVS12_01011 PF13369 Transglutaminase-like superfamily VSVS12_01012 PF00793 DAHP synthetase I family VSVS12_01013 PF02872 5'-nucleotidase, C-terminal domain VSVS12_01013 PF00149 Calcineurin-like phosphoesterase VSVS12_01014 PF04073 Aminoacyl-tRNA editing domain VSVS12_01015 PF01610 Transposase VSVS12_01015 PF13542 Helix-turn-helix domain of transposase family ISL3 VSVS12_01015 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 VSVS12_01016 PF00860 Permease family VSVS12_01019 PF03358 NADPH-dependent FMN reductase VSVS12_01020 PF03960 ArsC family VSVS12_01021 PF13181 Tetratricopeptide repeat VSVS12_01021 PF01435 Peptidase family M48 VSVS12_01023 PF01594 AI-2E family transporter VSVS12_01024 PF02743 Cache domain VSVS12_01024 PF00672 HAMP domain VSVS12_01024 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_01025 PF00578 AhpC/TSA family VSVS12_01028 PF11867 Domain of unknown function (DUF3387) VSVS12_01028 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VSVS12_01028 PF18766 SWI2/SNF2 ATPase VSVS12_01030 PF01420 Type I restriction modification DNA specificity domain VSVS12_01031 PF02384 N-6 DNA Methylase VSVS12_01031 PF12161 HsdM N-terminal domain VSVS12_01034 PF02899 Phage integrase, N-terminal SAM-like domain VSVS12_01034 PF00589 Phage integrase family VSVS12_01037 PF00578 AhpC/TSA family VSVS12_01042 PF00578 AhpC/TSA family VSVS12_01044 PF00701 Dihydrodipicolinate synthetase family VSVS12_01046 PF03553 Na+/H+ antiporter family VSVS12_01046 PF13726 Na+-H+ antiporter family VSVS12_01047 PF00929 Exonuclease VSVS12_01048 PF18393 MotY N-terminal domain VSVS12_01048 PF00691 OmpA family VSVS12_01049 PF10952 Protein of unknown function (DUF2753) VSVS12_01050 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VSVS12_01051 PF00730 HhH-GPD superfamily base excision DNA repair protein VSVS12_01051 PF00633 Helix-hairpin-helix motif VSVS12_01051 PF10576 Iron-sulfur binding domain of endonuclease III VSVS12_01052 PF02508 Rnf-Nqr subunit, membrane protein VSVS12_01055 PF10531 SLBB domain VSVS12_01055 PF12838 4Fe-4S dicluster domain VSVS12_01055 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VSVS12_01055 PF13375 RnfC Barrel sandwich hybrid domain VSVS12_01056 PF04060 Putative Fe-S cluster VSVS12_01057 PF02508 Rnf-Nqr subunit, membrane protein VSVS12_01058 PF03605 Anaerobic c4-dicarboxylate membrane transporter VSVS12_01060 PF17757 UvrB interaction domain VSVS12_01060 PF04851 Type III restriction enzyme, res subunit VSVS12_01060 PF02151 UvrB/uvrC motif VSVS12_01060 PF00271 Helicase conserved C-terminal domain VSVS12_01060 PF12344 Ultra-violet resistance protein B VSVS12_01061 PF02954 Bacterial regulatory protein, Fis family VSVS12_01061 PF00072 Response regulator receiver domain VSVS12_01061 PF00158 Sigma-54 interaction domain VSVS12_01062 PF01627 Hpt domain VSVS12_01063 PF01933 Uncharacterised protein family UPF0052 VSVS12_01064 PF04055 Radical SAM superfamily VSVS12_01064 PF06463 Molybdenum Cofactor Synthesis C VSVS12_01065 PF00994 Probable molybdopterin binding domain VSVS12_01066 PF01967 MoaC family VSVS12_01067 PF02597 ThiS family VSVS12_01068 PF02391 MoaE protein VSVS12_01070 PF01554 MatE VSVS12_01071 PF00403 Heavy-metal-associated domain VSVS12_01072 PF01048 Phosphorylase superfamily VSVS12_01073 PF01588 Putative tRNA binding domain VSVS12_01073 PF09334 tRNA synthetases class I (M) VSVS12_01074 PF10609 NUBPL iron-transfer P-loop NTPase VSVS12_01075 PF00485 Phosphoribulokinase / Uridine kinase family VSVS12_01076 PF05170 AsmA family VSVS12_01077 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP VSVS12_01078 PF01451 Low molecular weight phosphotyrosine protein phosphatase VSVS12_01081 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VSVS12_01081 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VSVS12_01082 PF00462 Glutaredoxin VSVS12_01083 PF01131 DNA topoisomerase VSVS12_01083 PF01751 Toprim domain VSVS12_01085 PF00850 Histone deacetylase domain VSVS12_01086 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_01086 PF17152 Periplasmic sensor domain VSVS12_01088 PF01053 Cys/Met metabolism PLP-dependent enzyme VSVS12_01090 PF00392 Bacterial regulatory proteins, gntR family VSVS12_01090 PF07702 UTRA domain VSVS12_01091 PF02779 Transketolase, pyrimidine binding domain VSVS12_01091 PF02780 Transketolase, C-terminal domain VSVS12_01092 PF00456 Transketolase, thiamine diphosphate binding domain VSVS12_01092 PF02780 Transketolase, C-terminal domain VSVS12_01092 PF02779 Transketolase, pyrimidine binding domain VSVS12_01093 PF03611 PTS system sugar-specific permease component VSVS12_01095 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VSVS12_01096 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) VSVS12_01097 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VSVS12_01097 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS12_01098 PF00375 Sodium:dicarboxylate symporter family VSVS12_01099 PF01042 Endoribonuclease L-PSP VSVS12_01100 PF08348 YheO-like PAS domain VSVS12_01100 PF13309 HTH domain VSVS12_01101 PF03606 C4-dicarboxylate anaerobic carrier VSVS12_01103 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_01103 PF03466 LysR substrate binding domain VSVS12_01106 PF00884 Sulfatase VSVS12_01106 PF11893 Domain of unknown function (DUF3413) VSVS12_01107 PF07208 Protein of unknown function (DUF1414) VSVS12_01108 PF04245 37-kD nucleoid-associated bacterial protein VSVS12_01111 PF03553 Na+/H+ antiporter family VSVS12_01112 PF02774 Semialdehyde dehydrogenase, dimerisation domain VSVS12_01112 PF01118 Semialdehyde dehydrogenase, NAD binding domain VSVS12_01113 PF07729 FCD domain VSVS12_01113 PF00392 Bacterial regulatory proteins, gntR family VSVS12_01116 PF00520 Ion transport protein VSVS12_01116 PF00027 Cyclic nucleotide-binding domain VSVS12_01117 PF01914 MarC family integral membrane protein VSVS12_01118 PF00465 Iron-containing alcohol dehydrogenase VSVS12_01118 PF00171 Aldehyde dehydrogenase family VSVS12_01119 PF03776 Septum formation topological specificity factor MinE VSVS12_01120 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VSVS12_01121 PF05209 Septum formation inhibitor MinC, N-terminal domain VSVS12_01121 PF03775 Septum formation inhibitor MinC, C-terminal domain VSVS12_01122 PF05166 YcgL domain VSVS12_01123 PF13406 Transglycosylase SLT domain VSVS12_01124 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_01124 PF03466 LysR substrate binding domain VSVS12_01125 PF07670 Nucleoside recognition VSVS12_01125 PF01773 Na+ dependent nucleoside transporter N-terminus VSVS12_01125 PF07662 Na+ dependent nucleoside transporter C-terminus VSVS12_01126 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain VSVS12_01126 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain VSVS12_01137 PF04244 Deoxyribodipyrimidine photo-lyase-related protein VSVS12_01138 PF00875 DNA photolyase VSVS12_01138 PF03441 FAD binding domain of DNA photolyase VSVS12_01140 PF00155 Aminotransferase class I and II VSVS12_01141 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit VSVS12_01144 PF02378 Phosphotransferase system, EIIC VSVS12_01145 PF01321 Creatinase/Prolidase N-terminal domain VSVS12_01145 PF00557 Metallopeptidase family M24 VSVS12_01146 PF05343 M42 glutamyl aminopeptidase VSVS12_01149 PF08220 DeoR-like helix-turn-helix domain VSVS12_01149 PF00455 DeoR C terminal sensor domain VSVS12_01150 PF03830 PTS system sorbose subfamily IIB component VSVS12_01151 PF03609 PTS system sorbose-specific iic component VSVS12_01152 PF03613 PTS system mannose/fructose/sorbose family IID component VSVS12_01154 PF07470 Glycosyl Hydrolase Family 88 VSVS12_01157 PF09339 IclR helix-turn-helix domain VSVS12_01157 PF01614 Bacterial transcriptional regulator VSVS12_01159 PF10688 Bacterial inner membrane protein VSVS12_01160 PF00294 pfkB family carbohydrate kinase VSVS12_01161 PF01081 KDPG and KHG aldolase VSVS12_01162 PF01081 KDPG and KHG aldolase VSVS12_01163 PF00012 Hsp70 protein VSVS12_01164 PF02798 Glutathione S-transferase, N-terminal domain VSVS12_01169 PF02696 Uncharacterized ACR, YdiU/UPF0061 family VSVS12_01170 PF03480 Bacterial extracellular solute-binding protein, family 7 VSVS12_01171 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VSVS12_01172 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VSVS12_01174 PF00005 ABC transporter VSVS12_01175 PF01032 FecCD transport family VSVS12_01177 PF02472 Biopolymer transport protein ExbD/TolR VSVS12_01178 PF01618 MotA/TolQ/ExbB proton channel family VSVS12_01179 PF03544 Gram-negative bacterial TonB protein C-terminal VSVS12_01181 PF04055 Radical SAM superfamily VSVS12_01182 PF06228 Haem utilisation ChuX/HutX VSVS12_01183 PF01243 Pyridoxamine 5'-phosphate oxidase VSVS12_01184 PF07715 TonB-dependent Receptor Plug Domain VSVS12_01184 PF00593 TonB dependent receptor VSVS12_01185 PF04886 PT repeat VSVS12_01185 PF00593 TonB dependent receptor VSVS12_01185 PF07715 TonB-dependent Receptor Plug Domain VSVS12_01186 PF00072 Response regulator receiver domain VSVS12_01186 PF00158 Sigma-54 interaction domain VSVS12_01186 PF02954 Bacterial regulatory protein, Fis family VSVS12_01187 PF02743 Cache domain VSVS12_01187 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_01187 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_01188 PF05697 Bacterial trigger factor protein (TF) VSVS12_01188 PF05698 Bacterial trigger factor protein (TF) C-terminus VSVS12_01188 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VSVS12_01189 PF00574 Clp protease VSVS12_01190 PF07724 AAA domain (Cdc48 subfamily) VSVS12_01190 PF06689 ClpX C4-type zinc finger VSVS12_01190 PF10431 C-terminal, D2-small domain, of ClpB protein VSVS12_01191 PF05362 Lon protease (S16) C-terminal proteolytic domain VSVS12_01191 PF02190 ATP-dependent protease La (LON) substrate-binding domain VSVS12_01191 PF00004 ATPase family associated with various cellular activities (AAA) VSVS12_01192 PF00216 Bacterial DNA-binding protein VSVS12_01193 PF13145 PPIC-type PPIASE domain VSVS12_01195 PF02224 Cytidylate kinase VSVS12_01196 PF00575 S1 RNA binding domain VSVS12_01197 PF00216 Bacterial DNA-binding protein VSVS12_01198 PF06305 Lipopolysaccharide assembly protein A domain VSVS12_01199 PF18073 Rubredoxin metal binding domain VSVS12_01200 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VSVS12_01202 PF03466 LysR substrate binding domain VSVS12_01202 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_01205 PF02653 Branched-chain amino acid transport system / permease component VSVS12_01206 PF00005 ABC transporter VSVS12_01207 PF00005 ABC transporter VSVS12_01208 PF01207 Dihydrouridine synthase (Dus) VSVS12_01210 PF02810 SEC-C motif VSVS12_01210 PF07516 SecA Wing and Scaffold domain VSVS12_01210 PF01043 SecA preprotein cross-linking domain VSVS12_01210 PF07517 SecA DEAD-like domain VSVS12_01211 PF03548 Outer membrane lipoprotein carrier protein LolA VSVS12_01212 PF16193 AAA C-terminal domain VSVS12_01212 PF00004 ATPase family associated with various cellular activities (AAA) VSVS12_01212 PF12002 MgsA AAA+ ATPase C terminal VSVS12_01213 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VSVS12_01213 PF02403 Seryl-tRNA synthetase N-terminal domain VSVS12_01215 PF00132 Bacterial transferase hexapeptide (six repeats) VSVS12_01215 PF14602 Hexapeptide repeat of succinyl-transferase VSVS12_01215 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal VSVS12_01217 PF00710 Asparaginase, N-terminal VSVS12_01217 PF17763 Glutaminase/Asparaginase C-terminal domain VSVS12_01218 PF01343 Peptidase family S49 VSVS12_01219 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VSVS12_01219 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS12_01221 PF00551 Formyl transferase VSVS12_01221 PF01842 ACT domain VSVS12_01223 PF13307 Helicase C-terminal domain VSVS12_01223 PF04851 Type III restriction enzyme, res subunit VSVS12_01224 PF00814 Glycoprotease family VSVS12_01226 PF03843 Outer membrane lipoprotein Slp family VSVS12_01227 PF08241 Methyltransferase domain VSVS12_01227 PF12697 Alpha/beta hydrolase family VSVS12_01228 PF13193 AMP-binding enzyme C-terminal domain VSVS12_01228 PF00501 AMP-binding enzyme VSVS12_01229 PF00570 HRDC domain VSVS12_01229 PF01612 3'-5' exonuclease VSVS12_01231 PF13091 PLD-like domain VSVS12_01232 PF01740 STAS domain VSVS12_01232 PF00916 Sulfate permease family VSVS12_01233 PF00575 S1 RNA binding domain VSVS12_01233 PF12111 Polyribonucleotide phosphorylase C terminal VSVS12_01233 PF10150 Ribonuclease E/G family VSVS12_01234 PF00849 RNA pseudouridylate synthase VSVS12_01234 PF01479 S4 domain VSVS12_01235 PF02545 Maf-like protein VSVS12_01236 PF02620 Large ribosomal RNA subunit accumulation protein YceD VSVS12_01238 PF02504 Fatty acid synthesis protein VSVS12_01239 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VSVS12_01239 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VSVS12_01240 PF00698 Acyl transferase domain VSVS12_01242 PF00550 Phosphopantetheine attachment site VSVS12_01243 PF00109 Beta-ketoacyl synthase, N-terminal domain VSVS12_01243 PF02801 Beta-ketoacyl synthase, C-terminal domain VSVS12_01244 PF01063 Amino-transferase class IV VSVS12_01245 PF02618 YceG-like family VSVS12_01246 PF02223 Thymidylate kinase VSVS12_01247 PF09115 DNA polymerase III, delta subunit, C terminal VSVS12_01248 PF01026 TatD related DNase VSVS12_01250 PF02378 Phosphotransferase system, EIIC VSVS12_01250 PF00367 phosphotransferase system, EIIB VSVS12_01253 PF00209 Sodium:neurotransmitter symporter family VSVS12_01258 PF01734 Patatin-like phospholipase VSVS12_01259 PF00480 ROK family VSVS12_01260 PF00072 Response regulator receiver domain VSVS12_01260 PF01584 CheW-like domain VSVS12_01261 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VSVS12_01261 PF02811 PHP domain VSVS12_01261 PF14579 Helix-hairpin-helix motif VSVS12_01261 PF07733 Bacterial DNA polymerase III alpha NTPase domain VSVS12_01261 PF01336 OB-fold nucleic acid binding domain VSVS12_01264 PF00106 short chain dehydrogenase VSVS12_01265 PF01343 Peptidase family S49 VSVS12_01265 PF08496 Peptidase family S49 N-terminal VSVS12_01266 PF01116 Fructose-bisphosphate aldolase class-II VSVS12_01267 PF01979 Amidohydrolase family VSVS12_01268 PF03610 PTS system fructose IIA component VSVS12_01269 PF03613 PTS system mannose/fructose/sorbose family IID component VSVS12_01270 PF03609 PTS system sorbose-specific iic component VSVS12_01271 PF03830 PTS system sorbose subfamily IIB component VSVS12_01272 PF01380 SIS domain VSVS12_01273 PF08013 Tagatose 6 phosphate kinase VSVS12_01274 PF00455 DeoR C terminal sensor domain VSVS12_01274 PF08220 DeoR-like helix-turn-helix domain VSVS12_01275 PF00313 'Cold-shock' DNA-binding domain VSVS12_01278 PF00455 DeoR C terminal sensor domain VSVS12_01278 PF08220 DeoR-like helix-turn-helix domain VSVS12_01281 PF01966 HD domain VSVS12_01281 PF13286 Phosphohydrolase-associated domain VSVS12_01283 PF00155 Aminotransferase class I and II VSVS12_01284 PF00425 chorismate binding enzyme VSVS12_01285 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VSVS12_01285 PF16582 Middle domain of thiamine pyrophosphate VSVS12_01285 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VSVS12_01286 PF12697 Alpha/beta hydrolase family VSVS12_01287 PF00378 Enoyl-CoA hydratase/isomerase VSVS12_01288 PF13378 Enolase C-terminal domain-like VSVS12_01289 PF00501 AMP-binding enzyme VSVS12_01289 PF13193 AMP-binding enzyme C-terminal domain VSVS12_01290 PF02378 Phosphotransferase system, EIIC VSVS12_01290 PF00367 phosphotransferase system, EIIB VSVS12_01290 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VSVS12_01291 PF03466 LysR substrate binding domain VSVS12_01291 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_01293 PF03601 Conserved hypothetical protein 698 VSVS12_01294 PF07690 Major Facilitator Superfamily VSVS12_01298 PF00291 Pyridoxal-phosphate dependent enzyme VSVS12_01299 PF01037 Lrp/AsnC ligand binding domain VSVS12_01299 PF13404 AsnC-type helix-turn-helix domain VSVS12_01302 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VSVS12_01304 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_01304 PF00563 EAL domain VSVS12_01304 PF08448 PAS fold VSVS12_01306 PF13402 Peptidase M60, enhancin and enhancin-like VSVS12_01306 PF17291 N-terminal domain of M60-like peptidases VSVS12_01306 PF13322 Domain of unknown function (DUF4092) VSVS12_01308 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_01308 PF03707 Bacterial signalling protein N terminal repeat VSVS12_01308 PF00563 EAL domain VSVS12_01309 PF00072 Response regulator receiver domain VSVS12_01309 PF09308 LuxQ, periplasmic VSVS12_01309 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_01309 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_01310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_01310 PF03466 LysR substrate binding domain VSVS12_01311 PF00106 short chain dehydrogenase VSVS12_01312 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VSVS12_01313 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_01314 PF12911 N-terminal TM domain of oligopeptide transport permease C VSVS12_01314 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_01315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VSVS12_01315 PF00005 ABC transporter VSVS12_01316 PF00005 ABC transporter VSVS12_01316 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VSVS12_01317 PF13416 Bacterial extracellular solute-binding protein VSVS12_01318 PF00850 Histone deacetylase domain VSVS12_01319 PF13409 Glutathione S-transferase, N-terminal domain VSVS12_01326 PF13533 Biotin-lipoyl like VSVS12_01327 PF00873 AcrB/AcrD/AcrF family VSVS12_01328 PF12838 4Fe-4S dicluster domain VSVS12_01328 PF00037 4Fe-4S binding domain VSVS12_01329 PF02613 Nitrate reductase delta subunit VSVS12_01330 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VSVS12_01330 PF01568 Molydopterin dinucleotide binding domain VSVS12_01330 PF00384 Molybdopterin oxidoreductase VSVS12_01331 PF12800 4Fe-4S binding domain VSVS12_01331 PF13247 4Fe-4S dicluster domain VSVS12_01332 PF04976 DMSO reductase anchor subunit (DmsC) VSVS12_01334 PF01515 Phosphate acetyl/butaryl transferase VSVS12_01334 PF07085 DRTGG domain VSVS12_01335 PF00871 Acetokinase family VSVS12_01336 PF04217 Protein of unknown function, DUF412 VSVS12_01337 PF01527 Transposase VSVS12_01338 PF13276 HTH-like domain VSVS12_01338 PF00665 Integrase core domain VSVS12_01338 PF13333 Integrase core domain VSVS12_01339 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VSVS12_01339 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VSVS12_01340 PF01037 Lrp/AsnC ligand binding domain VSVS12_01341 PF13491 4TM region of DNA translocase FtsK/SpoIIIE VSVS12_01341 PF09397 Ftsk gamma domain VSVS12_01341 PF01580 FtsK/SpoIIIE family VSVS12_01341 PF17854 FtsK alpha domain VSVS12_01342 PF02600 Disulfide bond formation protein DsbB VSVS12_01343 PF06450 Bacterial Na+/H+ antiporter B (NhaB) VSVS12_01344 PF00392 Bacterial regulatory proteins, gntR family VSVS12_01344 PF07840 FadR C-terminal domain VSVS12_01345 PF00111 2Fe-2S iron-sulfur cluster binding domain VSVS12_01345 PF00175 Oxidoreductase NAD-binding domain VSVS12_01345 PF00970 Oxidoreductase FAD-binding domain VSVS12_01346 PF03063 Prismane/CO dehydrogenase family VSVS12_01347 PF01590 GAF domain VSVS12_01347 PF00158 Sigma-54 interaction domain VSVS12_01349 PF00672 HAMP domain VSVS12_01349 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_01350 PF01230 HIT domain VSVS12_01353 PF13036 Peptidoglycan-synthase activator LpoB VSVS12_01353 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VSVS12_01356 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS12_01359 PF17757 UvrB interaction domain VSVS12_01359 PF03461 TRCF domain VSVS12_01359 PF02559 CarD-like/TRCF domain VSVS12_01359 PF00271 Helicase conserved C-terminal domain VSVS12_01359 PF00270 DEAD/DEAH box helicase VSVS12_01361 PF02687 FtsX-like permease family VSVS12_01361 PF12704 MacB-like periplasmic core domain VSVS12_01362 PF00005 ABC transporter VSVS12_01363 PF02687 FtsX-like permease family VSVS12_01363 PF12704 MacB-like periplasmic core domain VSVS12_01365 PF13567 Domain of unknown function (DUF4131) VSVS12_01365 PF00753 Metallo-beta-lactamase superfamily VSVS12_01365 PF03772 Competence protein VSVS12_01366 PF00664 ABC transporter transmembrane region VSVS12_01366 PF00005 ABC transporter VSVS12_01367 PF02606 Tetraacyldisaccharide-1-P 4'-kinase VSVS12_01368 PF03966 Trm112p-like protein VSVS12_01369 PF02348 Cytidylyltransferase VSVS12_01370 PF04293 SpoVR like protein VSVS12_01371 PF04285 Protein of unknown function (DUF444) VSVS12_01372 PF06798 PrkA serine protein kinase C-terminal domain VSVS12_01372 PF08298 PrkA AAA domain VSVS12_01373 PF06629 MltA-interacting protein MipA VSVS12_01375 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family VSVS12_01376 PF04055 Radical SAM superfamily VSVS12_01378 PF02901 Pyruvate formate lyase-like VSVS12_01378 PF01228 Glycine radical VSVS12_01380 PF00005 ABC transporter VSVS12_01381 PF00497 Bacterial extracellular solute-binding proteins, family 3 VSVS12_01382 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_01383 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_01384 PF04397 LytTr DNA-binding domain VSVS12_01384 PF00072 Response regulator receiver domain VSVS12_01385 PF07694 5TMR of 5TMR-LYT VSVS12_01385 PF06580 Histidine kinase VSVS12_01385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_01385 PF13492 GAF domain VSVS12_01388 PF12704 MacB-like periplasmic core domain VSVS12_01388 PF02687 FtsX-like permease family VSVS12_01389 PF00005 ABC transporter VSVS12_01396 PF01323 DSBA-like thioredoxin domain VSVS12_01398 PF00012 Hsp70 protein VSVS12_01399 PF00012 Hsp70 protein VSVS12_01401 PF08448 PAS fold VSVS12_01401 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_01407 PF11898 Domain of unknown function (DUF3418) VSVS12_01407 PF04408 Helicase associated domain (HA2) VSVS12_01407 PF00271 Helicase conserved C-terminal domain VSVS12_01407 PF00270 DEAD/DEAH box helicase VSVS12_01407 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VSVS12_01410 PF00375 Sodium:dicarboxylate symporter family VSVS12_01411 PF00290 Tryptophan synthase alpha chain VSVS12_01412 PF00291 Pyridoxal-phosphate dependent enzyme VSVS12_01413 PF00218 Indole-3-glycerol phosphate synthase VSVS12_01413 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VSVS12_01414 PF02885 Glycosyl transferase family, helical bundle domain VSVS12_01414 PF00591 Glycosyl transferase family, a/b domain VSVS12_01415 PF00117 Glutamine amidotransferase class-I VSVS12_01416 PF04715 Anthranilate synthase component I, N terminal region VSVS12_01416 PF00425 chorismate binding enzyme VSVS12_01417 PF02811 PHP domain VSVS12_01418 PF01300 Telomere recombination VSVS12_01419 PF01479 S4 domain VSVS12_01419 PF00849 RNA pseudouridylate synthase VSVS12_01420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_01420 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_01420 PF00672 HAMP domain VSVS12_01420 PF01627 Hpt domain VSVS12_01420 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VSVS12_01420 PF00072 Response regulator receiver domain VSVS12_01421 PF00072 Response regulator receiver domain VSVS12_01422 PF00072 Response regulator receiver domain VSVS12_01425 PF01327 Polypeptide deformylase VSVS12_01428 PF13542 Helix-turn-helix domain of transposase family ISL3 VSVS12_01428 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 VSVS12_01428 PF01610 Transposase VSVS12_01430 PF00037 4Fe-4S binding domain VSVS12_01430 PF11953 Domain of unknown function (DUF3470) VSVS12_01431 PF08032 RNA 2'-O ribose methyltransferase substrate binding VSVS12_01431 PF00588 SpoU rRNA Methylase family VSVS12_01438 PF00561 alpha/beta hydrolase fold VSVS12_01441 PF01734 Patatin-like phospholipase VSVS12_01444 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 VSVS12_01444 PF00703 Glycosyl hydrolases family 2 VSVS12_01444 PF02837 Glycosyl hydrolases family 2, sugar binding domain VSVS12_01444 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VSVS12_01448 PF01693 Caulimovirus viroplasmin VSVS12_01455 PF00849 RNA pseudouridylate synthase VSVS12_01455 PF01479 S4 domain VSVS12_01456 PF01380 SIS domain VSVS12_01457 PF00367 phosphotransferase system, EIIB VSVS12_01457 PF02378 Phosphotransferase system, EIIC VSVS12_01458 PF01380 SIS domain VSVS12_01458 PF01418 Helix-turn-helix domain, rpiR family VSVS12_01459 PF02656 Domain of unknown function (DUF202) VSVS12_01465 PF00753 Metallo-beta-lactamase superfamily VSVS12_01465 PF14863 Alkyl sulfatase dimerisation VSVS12_01465 PF14864 Alkyl sulfatase C-terminal VSVS12_01467 PF01844 HNH endonuclease VSVS12_01469 PF04261 Dyp-type peroxidase family VSVS12_01471 PF07859 alpha/beta hydrolase fold VSVS12_01473 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VSVS12_01473 PF12241 Trans-2-enoyl-CoA reductase catalytic region VSVS12_01473 PF07055 Enoyl reductase FAD binding domain VSVS12_01474 PF01575 MaoC like domain VSVS12_01475 PF01144 Coenzyme A transferase VSVS12_01476 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_01476 PF03466 LysR substrate binding domain VSVS12_01478 PF02803 Thiolase, C-terminal domain VSVS12_01478 PF00108 Thiolase, N-terminal domain VSVS12_01479 PF01556 DnaJ C terminal domain VSVS12_01479 PF00226 DnaJ domain VSVS12_01479 PF00684 DnaJ central domain VSVS12_01480 PF00012 Hsp70 protein VSVS12_01481 PF00011 Hsp20/alpha crystallin family VSVS12_01482 PF01926 50S ribosome-binding GTPase VSVS12_01482 PF16360 GTP-binding GTPase Middle Region VSVS12_01482 PF13167 GTP-binding GTPase N-terminal VSVS12_01483 PF00873 AcrB/AcrD/AcrF family VSVS12_01485 PF03773 Predicted permease VSVS12_01487 PF01609 Transposase DDE domain VSVS12_01487 PF13006 Insertion element 4 transposase N-terminal VSVS12_01489 PF01048 Phosphorylase superfamily VSVS12_01491 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region VSVS12_01491 PF12838 4Fe-4S dicluster domain VSVS12_01491 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VSVS12_01491 PF00384 Molybdopterin oxidoreductase VSVS12_01491 PF01568 Molydopterin dinucleotide binding domain VSVS12_01496 PF01425 Amidase VSVS12_01498 PF12833 Helix-turn-helix domain VSVS12_01498 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term VSVS12_01499 PF00704 Glycosyl hydrolases family 18 VSVS12_01499 PF06483 Chitinase C VSVS12_01500 PF13649 Methyltransferase domain VSVS12_01505 PF08448 PAS fold VSVS12_01505 PF08447 PAS fold VSVS12_01505 PF05231 MASE1 VSVS12_01505 PF13426 PAS domain VSVS12_01505 PF00563 EAL domain VSVS12_01505 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_01513 PF01464 Transglycosylase SLT domain VSVS12_01513 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VSVS12_01515 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VSVS12_01515 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS12_01520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_01520 PF17200 Single Cache domain 2 VSVS12_01520 PF00672 HAMP domain VSVS12_01521 PF00704 Glycosyl hydrolases family 18 VSVS12_01521 PF00041 Fibronectin type III domain VSVS12_01524 PF01979 Amidohydrolase family VSVS12_01526 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VSVS12_01529 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VSVS12_01530 PF01810 LysE type translocator VSVS12_01531 PF01235 Sodium:alanine symporter family VSVS12_01537 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_01537 PF00497 Bacterial extracellular solute-binding proteins, family 3 VSVS12_01537 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_01539 PF00266 Aminotransferase class-V VSVS12_01540 PF08497 Radical SAM N-terminal VSVS12_01540 PF04055 Radical SAM superfamily VSVS12_01540 PF11842 Domain of unknown function (DUF3362) VSVS12_01544 PF03466 LysR substrate binding domain VSVS12_01544 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_01545 PF01717 Cobalamin-independent synthase, Catalytic domain VSVS12_01545 PF08267 Cobalamin-independent synthase, N-terminal domain VSVS12_01546 PF02080 TrkA-C domain VSVS12_01546 PF06826 Predicted Permease Membrane Region VSVS12_01547 PF00462 Glutaredoxin VSVS12_01548 PF00465 Iron-containing alcohol dehydrogenase VSVS12_01548 PF00171 Aldehyde dehydrogenase family VSVS12_01549 PF01418 Helix-turn-helix domain, rpiR family VSVS12_01549 PF01380 SIS domain VSVS12_01550 PF00282 Pyridoxal-dependent decarboxylase conserved domain VSVS12_01552 PF03956 Lysine exporter LysO VSVS12_01554 PF04993 TfoX N-terminal domain VSVS12_01554 PF04994 TfoX C-terminal domain VSVS12_01556 PF04993 TfoX N-terminal domain VSVS12_01556 PF04994 TfoX C-terminal domain VSVS12_01560 PF00873 AcrB/AcrD/AcrF family VSVS12_01564 PF01546 Peptidase family M20/M25/M40 VSVS12_01564 PF07687 Peptidase dimerisation domain VSVS12_01565 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VSVS12_01566 PF04209 homogentisate 1,2-dioxygenase VSVS12_01568 PF14497 Glutathione S-transferase, C-terminal domain VSVS12_01568 PF02798 Glutathione S-transferase, N-terminal domain VSVS12_01571 PF00691 OmpA family VSVS12_01574 PF02913 FAD linked oxidases, C-terminal domain VSVS12_01574 PF01565 FAD binding domain VSVS12_01574 PF13183 4Fe-4S dicluster domain VSVS12_01575 PF04191 Phospholipid methyltransferase VSVS12_01576 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_01577 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_01578 PF00497 Bacterial extracellular solute-binding proteins, family 3 VSVS12_01579 PF00005 ABC transporter VSVS12_01583 PF00221 Aromatic amino acid lyase VSVS12_01584 PF01175 Urocanase Rossmann-like domain VSVS12_01584 PF17392 Urocanase C-terminal domain VSVS12_01584 PF17391 Urocanase N-terminal domain VSVS12_01585 PF00491 Arginase family VSVS12_01586 PF01979 Amidohydrolase family VSVS12_01587 PF07702 UTRA domain VSVS12_01587 PF00392 Bacterial regulatory proteins, gntR family VSVS12_01588 PF07070 SpoOM protein VSVS12_01591 PF05724 Thiopurine S-methyltransferase (TPMT) VSVS12_01592 PF02222 ATP-grasp domain VSVS12_01593 PF00939 Sodium:sulfate symporter transmembrane region VSVS12_01594 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_01594 PF00497 Bacterial extracellular solute-binding proteins, family 3 VSVS12_01594 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_01595 PF00072 Response regulator receiver domain VSVS12_01595 PF00158 Sigma-54 interaction domain VSVS12_01595 PF02954 Bacterial regulatory protein, Fis family VSVS12_01596 PF11871 Domain of unknown function (DUF3391) VSVS12_01596 PF01966 HD domain VSVS12_01598 PF04172 LrgB-like family VSVS12_01599 PF03788 LrgA family VSVS12_01600 PF00929 Exonuclease VSVS12_01600 PF08411 Exonuclease C-terminal VSVS12_01601 PF01042 Endoribonuclease L-PSP VSVS12_01602 PF00144 Beta-lactamase VSVS12_01603 PF13460 NAD(P)H-binding VSVS12_01604 PF01613 Flavin reductase like domain VSVS12_01606 PF02654 Cobalamin-5-phosphate synthase VSVS12_01607 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase VSVS12_01610 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VSVS12_01611 PF01032 FecCD transport family VSVS12_01612 PF00005 ABC transporter VSVS12_01616 PF07690 Major Facilitator Superfamily VSVS12_01617 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_01617 PF03466 LysR substrate binding domain VSVS12_01618 PF01566 Natural resistance-associated macrophage protein VSVS12_01619 PF00491 Arginase family VSVS12_01621 PF01863 Protein of unknown function DUF45 VSVS12_01622 PF05971 RNA methyltransferase VSVS12_01629 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VSVS12_01634 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_01634 PF00672 HAMP domain VSVS12_01634 PF17200 Single Cache domain 2 VSVS12_01635 PF04055 Radical SAM superfamily VSVS12_01636 PF06508 Queuosine biosynthesis protein QueC VSVS12_01637 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_01637 PF17151 Periplasmic sensor domain VSVS12_01639 PF00691 OmpA family VSVS12_01639 PF05736 OprF membrane domain VSVS12_01643 PF17785 PUA-like domain VSVS12_01643 PF10672 S-adenosylmethionine-dependent methyltransferase VSVS12_01644 PF00672 HAMP domain VSVS12_01644 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_01645 PF00708 Acylphosphatase VSVS12_01646 PF04358 DsrC like protein VSVS12_01647 PF01027 Inhibitor of apoptosis-promoting Bax1 VSVS12_01648 PF00005 ABC transporter VSVS12_01649 PF00005 ABC transporter VSVS12_01650 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_01651 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_01652 PF00497 Bacterial extracellular solute-binding proteins, family 3 VSVS12_01653 PF10414 Sirohaem synthase dimerisation region VSVS12_01653 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VSVS12_01653 PF14824 Sirohaem biosynthesis protein central VSVS12_01654 PF04461 Protein of unknown function (DUF520) VSVS12_01655 PF00793 DAHP synthetase I family VSVS12_01660 PF02470 MlaD protein VSVS12_01661 PF04403 Paraquat-inducible protein A VSVS12_01662 PF00005 ABC transporter VSVS12_01662 PF00664 ABC transporter transmembrane region VSVS12_01663 PF13185 GAF domain VSVS12_01664 PF17516 ProQ C-terminal domain VSVS12_01664 PF04352 ProQ/FINO family VSVS12_01665 PF00595 PDZ domain VSVS12_01665 PF17804 Tail specific protease N-terminal domain VSVS12_01665 PF03572 Peptidase family S41 VSVS12_01665 PF11818 C-terminal domain of tail specific protease (DUF3340) VSVS12_01667 PF01433 Peptidase family M1 domain VSVS12_01667 PF11940 Domain of unknown function (DUF3458) Ig-like fold VSVS12_01667 PF17432 Domain of unknown function (DUF3458_C) ARM repeats VSVS12_01669 PF05088 Bacterial NAD-glutamate dehydrogenase VSVS12_01670 PF01180 Dihydroorotate dehydrogenase VSVS12_01671 PF07126 Cell-division protein ZapC VSVS12_01672 PF01170 Putative RNA methylase family UPF0020 VSVS12_01672 PF02926 THUMP domain VSVS12_01672 PF10672 S-adenosylmethionine-dependent methyltransferase VSVS12_01674 PF00005 ABC transporter VSVS12_01674 PF12848 ABC transporter VSVS12_01674 PF16326 ABC transporter C-terminal domain VSVS12_01676 PF04957 Ribosome modulation factor VSVS12_01677 PF07977 FabA-like domain VSVS12_01678 PF13654 AAA domain VSVS12_01678 PF05362 Lon protease (S16) C-terminal proteolytic domain VSVS12_01679 PF06303 MatP N-terminal domain VSVS12_01679 PF17414 MatP C-terminal ribbon-helix-helix domain VSVS12_01682 PF00115 Cytochrome C and Quinol oxidase polypeptide I VSVS12_01685 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VSVS12_01685 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP VSVS12_01687 PF00403 Heavy-metal-associated domain VSVS12_01690 PF00027 Cyclic nucleotide-binding domain VSVS12_01690 PF13545 Crp-like helix-turn-helix domain VSVS12_01691 PF00582 Universal stress protein family VSVS12_01692 PF01171 PP-loop family VSVS12_01696 PF00005 ABC transporter VSVS12_01696 PF08402 TOBE domain VSVS12_01697 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_01698 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_01699 PF13416 Bacterial extracellular solute-binding protein VSVS12_01700 PF13416 Bacterial extracellular solute-binding protein VSVS12_01701 PF02146 Sir2 family VSVS12_01702 PF00909 Ammonium Transporter Family VSVS12_01705 PF13247 4Fe-4S dicluster domain VSVS12_01706 PF01568 Molydopterin dinucleotide binding domain VSVS12_01706 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VSVS12_01706 PF00384 Molybdopterin oxidoreductase VSVS12_01712 PF02634 FdhD/NarQ family VSVS12_01713 PF00672 HAMP domain VSVS12_01713 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_01713 PF02743 Cache domain VSVS12_01714 PF00005 ABC transporter VSVS12_01714 PF12848 ABC transporter VSVS12_01715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_01715 PF03466 LysR substrate binding domain VSVS12_01716 PF08240 Alcohol dehydrogenase GroES-like domain VSVS12_01716 PF00107 Zinc-binding dehydrogenase VSVS12_01719 PF17945 Beta/Gamma crystallin VSVS12_01719 PF12561 ToxR activated gene A lipoprotein domain VSVS12_01720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_01720 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_01721 PF00158 Sigma-54 interaction domain VSVS12_01721 PF02954 Bacterial regulatory protein, Fis family VSVS12_01721 PF00072 Response regulator receiver domain VSVS12_01722 PF12849 PBP superfamily domain VSVS12_01723 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_01724 PF00005 ABC transporter VSVS12_01725 PF12804 MobA-like NTP transferase domain VSVS12_01726 PF03453 MoeA N-terminal region (domain I and II) VSVS12_01726 PF03454 MoeA C-terminal region (domain IV) VSVS12_01726 PF00994 Probable molybdopterin binding domain VSVS12_01728 PF00480 ROK family VSVS12_01731 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_01731 PF00672 HAMP domain VSVS12_01732 PF00877 NlpC/P60 family VSVS12_01736 PF00677 Lumazine binding domain VSVS12_01737 PF01554 MatE VSVS12_01742 PF01810 LysE type translocator VSVS12_01748 PF03466 LysR substrate binding domain VSVS12_01748 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_01753 PF01938 TRAM domain VSVS12_01753 PF04055 Radical SAM superfamily VSVS12_01753 PF00919 Uncharacterized protein family UPF0004 VSVS12_01755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_01755 PF03466 LysR substrate binding domain VSVS12_01758 PF13542 Helix-turn-helix domain of transposase family ISL3 VSVS12_01758 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 VSVS12_01758 PF01610 Transposase VSVS12_01762 PF02378 Phosphotransferase system, EIIC VSVS12_01762 PF00367 phosphotransferase system, EIIB VSVS12_01763 PF13580 SIS domain VSVS12_01764 PF01380 SIS domain VSVS12_01764 PF01418 Helix-turn-helix domain, rpiR family VSVS12_01765 PF01068 ATP dependent DNA ligase domain VSVS12_01765 PF14743 DNA ligase OB-like domain VSVS12_01771 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_01771 PF00672 HAMP domain VSVS12_01771 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_01771 PF01627 Hpt domain VSVS12_01771 PF00072 Response regulator receiver domain VSVS12_01771 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VSVS12_01772 PF00158 Sigma-54 interaction domain VSVS12_01772 PF00072 Response regulator receiver domain VSVS12_01772 PF02954 Bacterial regulatory protein, Fis family VSVS12_01774 PF00534 Glycosyl transferases group 1 VSVS12_01774 PF13439 Glycosyltransferase Family 4 VSVS12_01783 PF13439 Glycosyltransferase Family 4 VSVS12_01783 PF00534 Glycosyl transferases group 1 VSVS12_01785 PF02397 Bacterial sugar transferase VSVS12_01787 PF08448 PAS fold VSVS12_01787 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_01788 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) VSVS12_01789 PF00480 ROK family VSVS12_01790 PF03707 Bacterial signalling protein N terminal repeat VSVS12_01790 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_01790 PF00563 EAL domain VSVS12_01793 PF17151 Periplasmic sensor domain VSVS12_01793 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_01795 PF00005 ABC transporter VSVS12_01796 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_01797 PF00497 Bacterial extracellular solute-binding proteins, family 3 VSVS12_01798 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_01801 PF02472 Biopolymer transport protein ExbD/TolR VSVS12_01802 PF01618 MotA/TolQ/ExbB proton channel family VSVS12_01803 PF01618 MotA/TolQ/ExbB proton channel family VSVS12_01805 PF00593 TonB dependent receptor VSVS12_01805 PF07715 TonB-dependent Receptor Plug Domain VSVS12_01806 PF16527 Two-component sensor protein CpxA, periplasmic domain VSVS12_01806 PF00672 HAMP domain VSVS12_01806 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_01806 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_01807 PF00072 Response regulator receiver domain VSVS12_01807 PF00486 Transcriptional regulatory protein, C terminal VSVS12_01809 PF16868 NMT1-like family VSVS12_01810 PF03009 Glycerophosphoryl diester phosphodiesterase family VSVS12_01812 PF01259 SAICAR synthetase VSVS12_01814 PF04055 Radical SAM superfamily VSVS12_01815 PF11230 Protein of unknown function (DUF3029) VSVS12_01816 PF02743 Cache domain VSVS12_01816 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_01816 PF00672 HAMP domain VSVS12_01818 PF01810 LysE type translocator VSVS12_01819 PF03989 DNA gyrase C-terminal domain, beta-propeller VSVS12_01819 PF00521 DNA gyrase/topoisomerase IV, subunit A VSVS12_01821 PF00317 Ribonucleotide reductase, all-alpha domain VSVS12_01821 PF02867 Ribonucleotide reductase, barrel domain VSVS12_01821 PF03477 ATP cone domain VSVS12_01822 PF00268 Ribonucleotide reductase, small chain VSVS12_01823 PF00111 2Fe-2S iron-sulfur cluster binding domain VSVS12_01825 PF00994 Probable molybdopterin binding domain VSVS12_01828 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VSVS12_01829 PF16653 Saccharopine dehydrogenase C-terminal domain VSVS12_01829 PF03435 Saccharopine dehydrogenase NADP binding domain VSVS12_01830 PF00202 Aminotransferase class-III VSVS12_01832 PF00691 OmpA family VSVS12_01833 PF06965 Na+/H+ antiporter 1 VSVS12_01836 PF00005 ABC transporter VSVS12_01837 PF01554 MatE VSVS12_01838 PF11066 Protein of unknown function (DUF2867) VSVS12_01838 PF13460 NAD(P)H-binding VSVS12_01839 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_01839 PF00563 EAL domain VSVS12_01839 PF08448 PAS fold VSVS12_01840 PF01235 Sodium:alanine symporter family VSVS12_01848 PF07690 Major Facilitator Superfamily VSVS12_01849 PF01479 S4 domain VSVS12_01849 PF00849 RNA pseudouridylate synthase VSVS12_01850 PF00271 Helicase conserved C-terminal domain VSVS12_01850 PF04851 Type III restriction enzyme, res subunit VSVS12_01852 PF00072 Response regulator receiver domain VSVS12_01852 PF00486 Transcriptional regulatory protein, C terminal VSVS12_01853 PF00672 HAMP domain VSVS12_01853 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_01853 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_01854 PF07690 Major Facilitator Superfamily VSVS12_01855 PF12833 Helix-turn-helix domain VSVS12_01856 PF09335 SNARE associated Golgi protein VSVS12_01857 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 VSVS12_01857 PF00535 Glycosyl transferase family 2 VSVS12_01858 PF01386 Ribosomal L25p family VSVS12_01864 PF00563 EAL domain VSVS12_01864 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_01864 PF03707 Bacterial signalling protein N terminal repeat VSVS12_01866 PF00210 Ferritin-like domain VSVS12_01868 PF00356 Bacterial regulatory proteins, lacI family VSVS12_01869 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VSVS12_01870 PF02378 Phosphotransferase system, EIIC VSVS12_01871 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit VSVS12_01873 PF00196 Bacterial regulatory proteins, luxR family VSVS12_01873 PF00072 Response regulator receiver domain VSVS12_01874 PF17200 Single Cache domain 2 VSVS12_01874 PF07730 Histidine kinase VSVS12_01875 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VSVS12_01877 PF03480 Bacterial extracellular solute-binding protein, family 7 VSVS12_01880 PF00753 Metallo-beta-lactamase superfamily VSVS12_01881 PF05951 Bacterial protein of unknown function (DUF882) VSVS12_01882 PF03734 L,D-transpeptidase catalytic domain VSVS12_01882 PF01471 Putative peptidoglycan binding domain VSVS12_01887 PF00925 GTP cyclohydrolase II VSVS12_01891 PF13302 Acetyltransferase (GNAT) domain VSVS12_01892 PF00158 Sigma-54 interaction domain VSVS12_01892 PF18024 Helix-turn-helix domain VSVS12_01893 PF05128 Domain of unknown function (DUF697) VSVS12_01894 PF04317 YcjX-like family, DUF463 VSVS12_01897 PF00425 chorismate binding enzyme VSVS12_01897 PF04715 Anthranilate synthase component I, N terminal region VSVS12_01898 PF09308 LuxQ, periplasmic VSVS12_01898 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_01898 PF00072 Response regulator receiver domain VSVS12_01898 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_01900 PF00293 NUDIX domain VSVS12_01901 PF03222 Tryptophan/tyrosine permease family VSVS12_01902 PF03315 Serine dehydratase beta chain VSVS12_01902 PF03313 Serine dehydratase alpha chain VSVS12_01904 PF01242 6-pyruvoyl tetrahydropterin synthase VSVS12_01905 PF17200 Single Cache domain 2 VSVS12_01905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_01905 PF00672 HAMP domain VSVS12_01907 PF01336 OB-fold nucleic acid binding domain VSVS12_01907 PF00152 tRNA synthetases class II (D, K and N) VSVS12_01908 PF01610 Transposase VSVS12_01908 PF13542 Helix-turn-helix domain of transposase family ISL3 VSVS12_01908 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 VSVS12_01914 PF00155 Aminotransferase class I and II VSVS12_01917 PF04408 Helicase associated domain (HA2) VSVS12_01917 PF11898 Domain of unknown function (DUF3418) VSVS12_01917 PF00270 DEAD/DEAH box helicase VSVS12_01917 PF00271 Helicase conserved C-terminal domain VSVS12_01917 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VSVS12_01918 PF00271 Helicase conserved C-terminal domain VSVS12_01918 PF00270 DEAD/DEAH box helicase VSVS12_01918 PF04408 Helicase associated domain (HA2) VSVS12_01918 PF08482 ATP-dependent helicase C-terminal VSVS12_01919 PF00390 Malic enzyme, N-terminal domain VSVS12_01919 PF03949 Malic enzyme, NAD binding domain VSVS12_01921 PF02698 DUF218 domain VSVS12_01922 PF00072 Response regulator receiver domain VSVS12_01922 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_01924 PF00266 Aminotransferase class-V VSVS12_01926 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS12_01927 PF00005 ABC transporter VSVS12_01927 PF00664 ABC transporter transmembrane region VSVS12_01928 PF00664 ABC transporter transmembrane region VSVS12_01928 PF00005 ABC transporter VSVS12_01930 PF01321 Creatinase/Prolidase N-terminal domain VSVS12_01930 PF00557 Metallopeptidase family M24 VSVS12_01931 PF01037 Lrp/AsnC ligand binding domain VSVS12_01932 PF00171 Aldehyde dehydrogenase family VSVS12_01933 PF00202 Aminotransferase class-III VSVS12_01934 PF01641 SelR domain VSVS12_01934 PF01625 Peptide methionine sulfoxide reductase VSVS12_01937 PF01625 Peptide methionine sulfoxide reductase VSVS12_01939 PF00270 DEAD/DEAH box helicase VSVS12_01939 PF00271 Helicase conserved C-terminal domain VSVS12_01947 PF00440 Bacterial regulatory proteins, tetR family VSVS12_01948 PF00583 Acetyltransferase (GNAT) family VSVS12_01966 PF02028 BCCT, betaine/carnitine/choline family transporter VSVS12_01968 PF00171 Aldehyde dehydrogenase family VSVS12_01970 PF03466 LysR substrate binding domain VSVS12_01970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_01973 PF00271 Helicase conserved C-terminal domain VSVS12_01973 PF00270 DEAD/DEAH box helicase VSVS12_01975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_01977 PF00581 Rhodanese-like domain VSVS12_01979 PF00375 Sodium:dicarboxylate symporter family VSVS12_01980 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS12_01983 PF00392 Bacterial regulatory proteins, gntR family VSVS12_01983 PF07702 UTRA domain VSVS12_01984 PF02743 Cache domain VSVS12_01984 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_01984 PF00672 HAMP domain VSVS12_01985 PF12464 Maltose acetyltransferase VSVS12_01985 PF00132 Bacterial transferase hexapeptide (six repeats) VSVS12_01986 PF13302 Acetyltransferase (GNAT) domain VSVS12_01988 PF03466 LysR substrate binding domain VSVS12_01988 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_01989 PF01554 MatE VSVS12_01994 PF03483 B3/4 domain VSVS12_01994 PF03484 tRNA synthetase B5 domain VSVS12_01994 PF01588 Putative tRNA binding domain VSVS12_01994 PF03147 Ferredoxin-fold anticodon binding domain VSVS12_01994 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain VSVS12_01995 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VSVS12_01995 PF01409 tRNA synthetases class II core domain (F) VSVS12_01997 PF00583 Acetyltransferase (GNAT) family VSVS12_01998 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_01998 PF00072 Response regulator receiver domain VSVS12_02000 PF17131 Outer membrane lipoprotein-sorting protein VSVS12_02003 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_02009 PF01066 CDP-alcohol phosphatidyltransferase VSVS12_02010 PF08459 UvrC Helix-hairpin-helix N-terminal VSVS12_02010 PF02151 UvrB/uvrC motif VSVS12_02010 PF01541 GIY-YIG catalytic domain VSVS12_02011 PF00196 Bacterial regulatory proteins, luxR family VSVS12_02011 PF00072 Response regulator receiver domain VSVS12_02014 PF00136 DNA polymerase family B VSVS12_02014 PF03104 DNA polymerase family B, exonuclease domain VSVS12_02015 PF02378 Phosphotransferase system, EIIC VSVS12_02017 PF08207 Elongation factor P (EF-P) KOW-like domain VSVS12_02017 PF01132 Elongation factor P (EF-P) OB domain VSVS12_02017 PF09285 Elongation factor P, C-terminal VSVS12_02018 PF04269 Protein of unknown function, DUF440 VSVS12_02020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_02020 PF00072 Response regulator receiver domain VSVS12_02022 PF04279 Intracellular septation protein A VSVS12_02023 PF03061 Thioesterase superfamily VSVS12_02024 PF03795 YCII-related domain VSVS12_02028 PF06945 Protein of unknown function (DUF1289) VSVS12_02030 PF13416 Bacterial extracellular solute-binding protein VSVS12_02031 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_02032 PF00005 ABC transporter VSVS12_02033 PF01066 CDP-alcohol phosphatidyltransferase VSVS12_02036 PF00849 RNA pseudouridylate synthase VSVS12_02037 PF12729 Four helix bundle sensory module for signal transduction VSVS12_02037 PF00672 HAMP domain VSVS12_02037 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_02038 PF00209 Sodium:neurotransmitter symporter family VSVS12_02039 PF13091 PLD-like domain VSVS12_02039 PF13396 Phospholipase_D-nuclease N-terminal VSVS12_02040 PF01053 Cys/Met metabolism PLP-dependent enzyme VSVS12_02041 PF01053 Cys/Met metabolism PLP-dependent enzyme VSVS12_02042 PF03352 Methyladenine glycosylase VSVS12_02043 PF00873 AcrB/AcrD/AcrF family VSVS12_02044 PF13533 Biotin-lipoyl like VSVS12_02047 PF06667 Phage shock protein B VSVS12_02048 PF04012 PspA/IM30 family VSVS12_02049 PF02954 Bacterial regulatory protein, Fis family VSVS12_02049 PF00158 Sigma-54 interaction domain VSVS12_02050 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VSVS12_02051 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_02052 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_02052 PF12911 N-terminal TM domain of oligopeptide transport permease C VSVS12_02053 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VSVS12_02053 PF00005 ABC transporter VSVS12_02054 PF00005 ABC transporter VSVS12_02055 PF01368 DHH family VSVS12_02055 PF02833 DHHA2 domain VSVS12_02057 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VSVS12_02057 PF01502 Phosphoribosyl-AMP cyclohydrolase VSVS12_02058 PF00977 Histidine biosynthesis protein VSVS12_02059 PF00977 Histidine biosynthesis protein VSVS12_02060 PF00117 Glutamine amidotransferase class-I VSVS12_02061 PF08645 Polynucleotide kinase 3 phosphatase VSVS12_02061 PF00475 Imidazoleglycerol-phosphate dehydratase VSVS12_02062 PF00155 Aminotransferase class I and II VSVS12_02063 PF00815 Histidinol dehydrogenase VSVS12_02064 PF08029 HisG, C-terminal domain VSVS12_02064 PF01634 ATP phosphoribosyltransferase VSVS12_02065 PF03553 Na+/H+ antiporter family VSVS12_02066 PF00816 H-NS histone family VSVS12_02067 PF00294 pfkB family carbohydrate kinase VSVS12_02070 PF04356 Protein of unknown function (DUF489) VSVS12_02071 PF08328 Adenylosuccinate lyase C-terminal VSVS12_02071 PF00206 Lyase VSVS12_02080 PF01435 Peptidase family M48 VSVS12_02083 PF08241 Methyltransferase domain VSVS12_02084 PF00155 Aminotransferase class I and II VSVS12_02085 PF06968 Biotin and Thiamin Synthesis associated domain VSVS12_02085 PF04055 Radical SAM superfamily VSVS12_02086 PF00202 Aminotransferase class-III VSVS12_02087 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VSVS12_02089 PF06733 DEAD_2 VSVS12_02089 PF13307 Helicase C-terminal domain VSVS12_02090 PF01925 Sulfite exporter TauE/SafE VSVS12_02091 PF07445 Primosomal replication protein priC VSVS12_02092 PF10689 Protein of unknown function (DUF2496) VSVS12_02093 PF08007 Cupin superfamily protein VSVS12_02094 PF03372 Endonuclease/Exonuclease/phosphatase family VSVS12_02095 PF00005 ABC transporter VSVS12_02095 PF00664 ABC transporter transmembrane region VSVS12_02096 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VSVS12_02096 PF00529 HlyD membrane-fusion protein of T1SS VSVS12_02098 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VSVS12_02098 PF12241 Trans-2-enoyl-CoA reductase catalytic region VSVS12_02098 PF07055 Enoyl reductase FAD binding domain VSVS12_02099 PF09317 Domain of unknown function (DUF1974) VSVS12_02099 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VSVS12_02099 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VSVS12_02100 PF00440 Bacterial regulatory proteins, tetR family VSVS12_02102 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase VSVS12_02103 PF00535 Glycosyl transferase family 2 VSVS12_02104 PF00486 Transcriptional regulatory protein, C terminal VSVS12_02104 PF00072 Response regulator receiver domain VSVS12_02105 PF00672 HAMP domain VSVS12_02105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_02105 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_02108 PF14376 Haem-binding domain VSVS12_02108 PF00034 Cytochrome c VSVS12_02108 PF03150 Di-haem cytochrome c peroxidase VSVS12_02109 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_02109 PF09308 LuxQ, periplasmic VSVS12_02109 PF00072 Response regulator receiver domain VSVS12_02109 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_02111 PF01979 Amidohydrolase family VSVS12_02112 PF10063 Uncharacterized integral membrane protein (DUF2301) VSVS12_02115 PF13421 SPFH domain-Band 7 family VSVS12_02120 PF02472 Biopolymer transport protein ExbD/TolR VSVS12_02121 PF01618 MotA/TolQ/ExbB proton channel family VSVS12_02122 PF01618 MotA/TolQ/ExbB proton channel family VSVS12_02124 PF07715 TonB-dependent Receptor Plug Domain VSVS12_02125 PF06472 ABC transporter transmembrane region 2 VSVS12_02125 PF00005 ABC transporter VSVS12_02126 PF05193 Peptidase M16 inactive domain VSVS12_02126 PF00675 Insulinase (Peptidase family M16) VSVS12_02127 PF00294 pfkB family carbohydrate kinase VSVS12_02129 PF03747 ADP-ribosylglycohydrolase VSVS12_02130 PF00155 Aminotransferase class I and II VSVS12_02130 PF00392 Bacterial regulatory proteins, gntR family VSVS12_02131 PF13391 HNH endonuclease VSVS12_02134 PF06610 L-alanine exporter VSVS12_02135 PF00072 Response regulator receiver domain VSVS12_02135 PF09308 LuxQ, periplasmic VSVS12_02135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_02135 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_02138 PF02445 Quinolinate synthetase A protein VSVS12_02139 PF16331 TolA binding protein trimerisation VSVS12_02139 PF13174 Tetratricopeptide repeat VSVS12_02140 PF00691 OmpA family VSVS12_02143 PF02472 Biopolymer transport protein ExbD/TolR VSVS12_02144 PF01618 MotA/TolQ/ExbB proton channel family VSVS12_02145 PF03061 Thioesterase superfamily VSVS12_02147 PF08173 Membrane bound YbgT-like protein VSVS12_02148 PF02322 Cytochrome bd terminal oxidase subunit II VSVS12_02149 PF01654 Cytochrome bd terminal oxidase subunit I VSVS12_02150 PF05496 Holliday junction DNA helicase RuvB P-loop domain VSVS12_02150 PF05491 RuvB C-terminal winged helix domain VSVS12_02150 PF17864 RuvB AAA lid domain VSVS12_02151 PF07499 RuvA, C-terminal domain VSVS12_02151 PF01330 RuvA N terminal domain VSVS12_02152 PF02075 Crossover junction endodeoxyribonuclease RuvC VSVS12_02154 PF18364 Molybdopterin oxidoreductase N-terminal domain VSVS12_02154 PF01568 Molydopterin dinucleotide binding domain VSVS12_02154 PF00384 Molybdopterin oxidoreductase VSVS12_02155 PF03264 NapC/NirT cytochrome c family, N-terminal region VSVS12_02156 PF06796 Periplasmic nitrate reductase protein NapE VSVS12_02157 PF03649 Uncharacterised protein family (UPF0014) VSVS12_02159 PF01226 Formate/nitrite transporter VSVS12_02162 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_02162 PF03466 LysR substrate binding domain VSVS12_02165 PF10431 C-terminal, D2-small domain, of ClpB protein VSVS12_02165 PF02861 Clp amino terminal domain, pathogenicity island component VSVS12_02165 PF17871 AAA lid domain VSVS12_02165 PF07724 AAA domain (Cdc48 subfamily) VSVS12_02165 PF00004 ATPase family associated with various cellular activities (AAA) VSVS12_02166 PF02617 ATP-dependent Clp protease adaptor protein ClpS VSVS12_02167 PF00313 'Cold-shock' DNA-binding domain VSVS12_02168 PF03971 Monomeric isocitrate dehydrogenase VSVS12_02169 PF00849 RNA pseudouridylate synthase VSVS12_02170 PF02683 Cytochrome C biogenesis protein transmembrane region VSVS12_02170 PF11412 Disulphide bond corrector protein DsbC VSVS12_02171 PF00085 Thioredoxin VSVS12_02172 PF02938 GAD domain VSVS12_02172 PF01336 OB-fold nucleic acid binding domain VSVS12_02172 PF00152 tRNA synthetases class II (D, K and N) VSVS12_02173 PF01904 Protein of unknown function DUF72 VSVS12_02174 PF13649 Methyltransferase domain VSVS12_02176 PF18030 RimK PreATP-grasp domain VSVS12_02176 PF08443 RimK-like ATP-grasp domain VSVS12_02179 PF00892 EamA-like transporter family VSVS12_02180 PF16330 MukB hinge domain VSVS12_02180 PF04310 MukB N-terminal VSVS12_02181 PF04288 MukE-like family VSVS12_02182 PF03882 MukF winged-helix domain VSVS12_02182 PF17193 MukF C-terminal domain VSVS12_02182 PF17192 MukF middle domain VSVS12_02184 PF02698 DUF218 domain VSVS12_02185 PF00072 Response regulator receiver domain VSVS12_02185 PF00486 Transcriptional regulatory protein, C terminal VSVS12_02186 PF02613 Nitrate reductase delta subunit VSVS12_02187 PF00356 Bacterial regulatory proteins, lacI family VSVS12_02188 PF04994 TfoX C-terminal domain VSVS12_02188 PF04993 TfoX N-terminal domain VSVS12_02191 PF00561 alpha/beta hydrolase fold VSVS12_02193 PF00483 Nucleotidyl transferase VSVS12_02194 PF01396 Topoisomerase DNA binding C4 zinc finger VSVS12_02194 PF08272 Topoisomerase I zinc-ribbon-like VSVS12_02194 PF01131 DNA topoisomerase VSVS12_02194 PF01751 Toprim domain VSVS12_02195 PF10692 Protein of unknown function (DUF2498) VSVS12_02196 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VSVS12_02197 PF05433 Glycine zipper 2TM domain VSVS12_02198 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VSVS12_02199 PF04376 Arginine-tRNA-protein transferase, N terminus VSVS12_02199 PF04377 Arginine-tRNA-protein transferase, C terminus VSVS12_02200 PF01176 Translation initiation factor 1A / IF-1 VSVS12_02201 PF00265 Thymidine kinase VSVS12_02202 PF01406 tRNA synthetases class I (C) catalytic domain VSVS12_02202 PF09190 DALR domain VSVS12_02203 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VSVS12_02205 PF08668 HDOD domain VSVS12_02205 PF00563 EAL domain VSVS12_02206 PF02810 SEC-C motif VSVS12_02207 PF07023 Protein of unknown function (DUF1315) VSVS12_02209 PF01641 SelR domain VSVS12_02210 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VSVS12_02210 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VSVS12_02211 PF01263 Aldose 1-epimerase VSVS12_02212 PF13847 Methyltransferase domain VSVS12_02214 PF02028 BCCT, betaine/carnitine/choline family transporter VSVS12_02215 PF00924 Mechanosensitive ion channel VSVS12_02215 PF05552 Conserved TM helix VSVS12_02216 PF03692 Putative zinc- or iron-chelating domain VSVS12_02217 PF04226 Transglycosylase associated protein VSVS12_02218 PF03692 Putative zinc- or iron-chelating domain VSVS12_02220 PF00230 Major intrinsic protein VSVS12_02221 PF13662 Toprim domain VSVS12_02221 PF02132 RecR protein VSVS12_02222 PF02575 YbaB/EbfC DNA-binding family VSVS12_02223 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding VSVS12_02223 PF12169 DNA polymerase III subunits gamma and tau domain III VSVS12_02223 PF12170 DNA polymerase III tau subunit V interacting with alpha VSVS12_02224 PF00156 Phosphoribosyl transferase domain VSVS12_02227 PF00072 Response regulator receiver domain VSVS12_02228 PF03466 LysR substrate binding domain VSVS12_02228 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_02229 PF00881 Nitroreductase family VSVS12_02230 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VSVS12_02230 PF00378 Enoyl-CoA hydratase/isomerase VSVS12_02230 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VSVS12_02231 PF02803 Thiolase, C-terminal domain VSVS12_02231 PF00108 Thiolase, N-terminal domain VSVS12_02232 PF08281 Sigma-70, region 4 VSVS12_02232 PF04542 Sigma-70 region 2 VSVS12_02234 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VSVS12_02235 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VSVS12_02236 PF04333 MlaA lipoprotein VSVS12_02238 PF03918 Cytochrome C biogenesis protein VSVS12_02239 PF08534 Redoxin VSVS12_02240 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VSVS12_02240 PF01578 Cytochrome C assembly protein VSVS12_02241 PF03100 CcmE VSVS12_02243 PF01578 Cytochrome C assembly protein VSVS12_02244 PF03379 CcmB protein VSVS12_02245 PF00005 ABC transporter VSVS12_02247 PF01584 CheW-like domain VSVS12_02249 PF13614 AAA domain VSVS12_02250 PF00072 Response regulator receiver domain VSVS12_02250 PF01339 CheB methylesterase VSVS12_02251 PF01584 CheW-like domain VSVS12_02251 PF02895 Signal transducing histidine kinase, homodimeric domain VSVS12_02251 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_02251 PF01627 Hpt domain VSVS12_02251 PF07194 P2 response regulator binding domain VSVS12_02252 PF04344 Chemotaxis phosphatase, CheZ VSVS12_02253 PF00072 Response regulator receiver domain VSVS12_02254 PF04545 Sigma-70, region 4 VSVS12_02254 PF04542 Sigma-70 region 2 VSVS12_02254 PF04539 Sigma-70 region 3 VSVS12_02255 PF10609 NUBPL iron-transfer P-loop NTPase VSVS12_02256 PF00448 SRP54-type protein, GTPase domain VSVS12_02257 PF00771 FHIPEP family VSVS12_02258 PF00300 Histidine phosphatase superfamily (branch 1) VSVS12_02259 PF05193 Peptidase M16 inactive domain VSVS12_02259 PF00675 Insulinase (Peptidase family M16) VSVS12_02260 PF06185 YecM protein VSVS12_02261 PF03485 Arginyl tRNA synthetase N terminal domain VSVS12_02261 PF05746 DALR anticodon binding domain VSVS12_02261 PF00750 tRNA synthetases class I (R) VSVS12_02264 PF02421 Ferrous iron transport protein B VSVS12_02264 PF07670 Nucleoside recognition VSVS12_02264 PF07664 Ferrous iron transport protein B C terminus VSVS12_02265 PF04023 FeoA domain VSVS12_02267 PF01297 Zinc-uptake complex component A periplasmic VSVS12_02268 PF00005 ABC transporter VSVS12_02269 PF00950 ABC 3 transport family VSVS12_02270 PF00156 Phosphoribosyl transferase domain VSVS12_02271 PF02674 Colicin V production protein VSVS12_02272 PF05036 Sporulation related domain VSVS12_02273 PF02875 Mur ligase family, glutamate ligase domain VSVS12_02273 PF08245 Mur ligase middle domain VSVS12_02274 PF01039 Carboxyl transferase domain VSVS12_02274 PF17848 Acetyl-coA carboxylase zinc finger domain VSVS12_02277 PF02774 Semialdehyde dehydrogenase, dimerisation domain VSVS12_02277 PF01118 Semialdehyde dehydrogenase, NAD binding domain VSVS12_02278 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VSVS12_02278 PF11890 Domain of unknown function (DUF3410) VSVS12_02278 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VSVS12_02279 PF00109 Beta-ketoacyl synthase, N-terminal domain VSVS12_02279 PF02801 Beta-ketoacyl synthase, C-terminal domain VSVS12_02280 PF01266 FAD dependent oxidoreductase VSVS12_02280 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VSVS12_02282 PF08891 YfcL protein VSVS12_02286 PF04315 Elongation factor P hydroxylase VSVS12_02287 PF03458 UPF0126 domain VSVS12_02288 PF01264 Chorismate synthase VSVS12_02289 PF05175 Methyltransferase small domain VSVS12_02290 PF01713 Smr domain VSVS12_02291 PF01312 FlhB HrpN YscU SpaS Family VSVS12_02292 PF01311 Bacterial export proteins, family 1 VSVS12_02293 PF01313 Bacterial export proteins, family 3 VSVS12_02294 PF00813 FliP family VSVS12_02295 PF04347 Flagellar biosynthesis protein, FliO VSVS12_02296 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VSVS12_02297 PF02154 Flagellar motor switch protein FliM VSVS12_02297 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VSVS12_02301 PF18269 T3SS EscN ATPase C-terminal domain VSVS12_02301 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VSVS12_02303 PF14841 FliG middle domain VSVS12_02303 PF14842 FliG N-terminal domain VSVS12_02303 PF01706 FliG C-terminal domain VSVS12_02304 PF08345 Flagellar M-ring protein C-terminal VSVS12_02304 PF01514 Secretory protein of YscJ/FliF family VSVS12_02305 PF02049 Flagellar hook-basal body complex protein FliE VSVS12_02306 PF00072 Response regulator receiver domain VSVS12_02306 PF02954 Bacterial regulatory protein, Fis family VSVS12_02306 PF00158 Sigma-54 interaction domain VSVS12_02307 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_02307 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_02308 PF02954 Bacterial regulatory protein, Fis family VSVS12_02308 PF00072 Response regulator receiver domain VSVS12_02308 PF00158 Sigma-54 interaction domain VSVS12_02309 PF02561 Flagellar protein FliS VSVS12_02311 PF02465 Flagellar hook-associated protein 2 N-terminus VSVS12_02311 PF07195 Flagellar hook-associated protein 2 C-terminus VSVS12_02311 PF07196 Flagellin hook IN motif VSVS12_02312 PF03646 FlaG protein VSVS12_02313 PF07196 Flagellin hook IN motif VSVS12_02313 PF00669 Bacterial flagellin N-terminal helical region VSVS12_02313 PF00700 Bacterial flagellin C-terminal helical region VSVS12_02314 PF00669 Bacterial flagellin N-terminal helical region VSVS12_02314 PF07196 Flagellin hook IN motif VSVS12_02314 PF00700 Bacterial flagellin C-terminal helical region VSVS12_02315 PF00669 Bacterial flagellin N-terminal helical region VSVS12_02315 PF07196 Flagellin hook IN motif VSVS12_02315 PF00700 Bacterial flagellin C-terminal helical region VSVS12_02316 PF04261 Dyp-type peroxidase family VSVS12_02317 PF11143 Protein of unknown function (DUF2919) VSVS12_02318 PF03918 Cytochrome C biogenesis protein VSVS12_02319 PF08534 Redoxin VSVS12_02320 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VSVS12_02320 PF01578 Cytochrome C assembly protein VSVS12_02321 PF03916 Polysulphide reductase, NrfD VSVS12_02322 PF13247 4Fe-4S dicluster domain VSVS12_02324 PF02335 Cytochrome c552 VSVS12_02329 PF03960 ArsC family VSVS12_02330 PF01546 Peptidase family M20/M25/M40 VSVS12_02330 PF07687 Peptidase dimerisation domain VSVS12_02333 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) VSVS12_02334 PF07348 Syd protein (SUKH-2) VSVS12_02335 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term VSVS12_02335 PF14489 QueF-like protein VSVS12_02337 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_02338 PF03641 Possible lysine decarboxylase VSVS12_02338 PF11892 Domain of unknown function (DUF3412) VSVS12_02338 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases VSVS12_02339 PF01367 5'-3' exonuclease, C-terminal SAM fold VSVS12_02339 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VSVS12_02340 PF13006 Insertion element 4 transposase N-terminal VSVS12_02340 PF01609 Transposase DDE domain VSVS12_02341 PF18125 RlmM ferredoxin-like domain VSVS12_02341 PF01728 FtsJ-like methyltransferase VSVS12_02342 PF04241 Protein of unknown function (DUF423) VSVS12_02344 PF03466 LysR substrate binding domain VSVS12_02344 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_02345 PF01527 Transposase VSVS12_02346 PF13333 Integrase core domain VSVS12_02346 PF00665 Integrase core domain VSVS12_02346 PF13276 HTH-like domain VSVS12_02347 PF02926 THUMP domain VSVS12_02347 PF02568 Thiamine biosynthesis protein (ThiI) VSVS12_02348 PF13677 Membrane MotB of proton-channel complex MotA/MotB VSVS12_02348 PF00691 OmpA family VSVS12_02349 PF01618 MotA/TolQ/ExbB proton channel family VSVS12_02351 PF00348 Polyprenyl synthetase VSVS12_02352 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VSVS12_02352 PF02780 Transketolase, C-terminal domain VSVS12_02352 PF02779 Transketolase, pyrimidine binding domain VSVS12_02356 PF00849 RNA pseudouridylate synthase VSVS12_02357 PF04287 tRNA pseudouridine synthase C VSVS12_02362 PF00549 CoA-ligase VSVS12_02362 PF02629 CoA binding domain VSVS12_02363 PF00549 CoA-ligase VSVS12_02363 PF08442 ATP-grasp domain VSVS12_02364 PF02817 e3 binding domain VSVS12_02364 PF00364 Biotin-requiring enzyme VSVS12_02364 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VSVS12_02365 PF16078 2-oxoglutarate dehydrogenase N-terminus VSVS12_02365 PF00676 Dehydrogenase E1 component VSVS12_02365 PF16870 2-oxoglutarate dehydrogenase C-terminal VSVS12_02365 PF02779 Transketolase, pyrimidine binding domain VSVS12_02366 PF13085 2Fe-2S iron-sulfur cluster binding domain VSVS12_02367 PF02910 Fumarate reductase flavoprotein C-term VSVS12_02367 PF00890 FAD binding domain VSVS12_02368 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VSVS12_02369 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VSVS12_02370 PF00285 Citrate synthase, C-terminal domain VSVS12_02371 PF01784 NIF3 (NGG1p interacting factor 3) VSVS12_02374 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VSVS12_02374 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VSVS12_02374 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VSVS12_02374 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VSVS12_02375 PF17206 SeqA protein N-terminal domain VSVS12_02375 PF03925 SeqA protein C-terminal domain VSVS12_02376 PF12697 Alpha/beta hydrolase family VSVS12_02378 PF00258 Flavodoxin VSVS12_02380 PF01475 Ferric uptake regulator family VSVS12_02381 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain VSVS12_02381 PF00749 tRNA synthetases class I (E and Q), catalytic domain VSVS12_02382 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VSVS12_02382 PF00367 phosphotransferase system, EIIB VSVS12_02382 PF02378 Phosphotransferase system, EIIC VSVS12_02383 PF01979 Amidohydrolase family VSVS12_02384 PF01047 MarR family VSVS12_02384 PF00480 ROK family VSVS12_02385 PF02254 TrkA-N domain VSVS12_02385 PF00999 Sodium/hydrogen exchanger family VSVS12_02386 PF13537 Glutamine amidotransferase domain VSVS12_02386 PF00733 Asparagine synthase VSVS12_02387 PF00854 POT family VSVS12_02391 PF01713 Smr domain VSVS12_02392 PF01479 S4 domain VSVS12_02392 PF00849 RNA pseudouridylate synthase VSVS12_02394 PF02769 AIR synthase related protein, C-terminal domain VSVS12_02394 PF00586 AIR synthase related protein, N-terminal domain VSVS12_02395 PF00551 Formyl transferase VSVS12_02397 PF06786 Uncharacterised protein family (UPF0253) VSVS12_02400 PF02769 AIR synthase related protein, C-terminal domain VSVS12_02400 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain VSVS12_02400 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal VSVS12_02401 PF01464 Transglycosylase SLT domain VSVS12_02401 PF00497 Bacterial extracellular solute-binding proteins, family 3 VSVS12_02403 PF14437 MafB19-like deaminase VSVS12_02404 PF03471 Transporter associated domain VSVS12_02404 PF00571 CBS domain VSVS12_02404 PF01595 Cyclin M transmembrane N-terminal domain VSVS12_02405 PF03806 AbgT putative transporter family VSVS12_02411 PF00226 DnaJ domain VSVS12_02411 PF01556 DnaJ C terminal domain VSVS12_02411 PF00684 DnaJ central domain VSVS12_02412 PF00012 Hsp70 protein VSVS12_02413 PF13333 Integrase core domain VSVS12_02413 PF00665 Integrase core domain VSVS12_02413 PF13276 HTH-like domain VSVS12_02414 PF01527 Transposase VSVS12_02416 PF00375 Sodium:dicarboxylate symporter family VSVS12_02418 PF01025 GrpE VSVS12_02421 PF02463 RecF/RecN/SMC N terminal domain VSVS12_02422 PF04355 SmpA / OmlA family VSVS12_02423 PF03658 RnfH family Ubiquitin VSVS12_02424 PF03364 Polyketide cyclase / dehydrase and lipid transport VSVS12_02425 PF01668 SmpB protein VSVS12_02427 PF00924 Mechanosensitive ion channel VSVS12_02429 PF01979 Amidohydrolase family VSVS12_02431 PF00795 Carbon-nitrogen hydrolase VSVS12_02431 PF00583 Acetyltransferase (GNAT) family VSVS12_02432 PF12729 Four helix bundle sensory module for signal transduction VSVS12_02432 PF00672 HAMP domain VSVS12_02432 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_02433 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain VSVS12_02433 PF00753 Metallo-beta-lactamase superfamily VSVS12_02433 PF10996 Beta-Casp domain VSVS12_02435 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VSVS12_02435 PF02378 Phosphotransferase system, EIIC VSVS12_02435 PF00367 phosphotransferase system, EIIB VSVS12_02436 PF05661 Protein of unknown function (DUF808) VSVS12_02437 PF01053 Cys/Met metabolism PLP-dependent enzyme VSVS12_02438 PF01235 Sodium:alanine symporter family VSVS12_02439 PF01184 GPR1/FUN34/yaaH family VSVS12_02440 PF03553 Na+/H+ antiporter family VSVS12_02442 PF00571 CBS domain VSVS12_02442 PF00478 IMP dehydrogenase / GMP reductase domain VSVS12_02443 PF02601 Exonuclease VII, large subunit VSVS12_02443 PF13742 OB-fold nucleic acid binding domain VSVS12_02446 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VSVS12_02446 PF01926 50S ribosome-binding GTPase VSVS12_02447 PF13360 PQQ-like domain VSVS12_02448 PF09976 Tetratricopeptide repeat-like domain VSVS12_02449 PF03129 Anticodon binding domain VSVS12_02449 PF13393 Histidyl-tRNA synthetase VSVS12_02450 PF04551 GcpE protein VSVS12_02451 PF13464 Domain of unknown function (DUF4115) VSVS12_02452 PF04055 Radical SAM superfamily VSVS12_02453 PF02657 Fe-S metabolism associated domain VSVS12_02454 PF00899 ThiF family VSVS12_02455 PF06725 3D domain VSVS12_02455 PF03562 MltA specific insert domain VSVS12_02457 PF00696 Amino acid kinase family VSVS12_02457 PF00583 Acetyltransferase (GNAT) family VSVS12_02459 PF13538 UvrD-like helicase C-terminal domain VSVS12_02460 PF12705 PD-(D/E)XK nuclease superfamily VSVS12_02460 PF13361 UvrD-like helicase C-terminal domain VSVS12_02460 PF00580 UvrD/REP helicase N-terminal domain VSVS12_02461 PF17946 RecC C-terminal domain VSVS12_02463 PF03466 LysR substrate binding domain VSVS12_02463 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_02464 PF07130 YebG protein VSVS12_02465 PF00873 AcrB/AcrD/AcrF family VSVS12_02466 PF13533 Biotin-lipoyl like VSVS12_02471 PF03932 CutC family VSVS12_02472 PF01895 PhoU domain VSVS12_02473 PF00005 ABC transporter VSVS12_02474 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_02475 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_02476 PF02541 Ppx/GppA phosphatase family VSVS12_02477 PF12849 PBP superfamily domain VSVS12_02478 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_02478 PF00989 PAS fold VSVS12_02478 PF11808 Phosphate regulon sensor protein PhoR VSVS12_02478 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_02479 PF00072 Response regulator receiver domain VSVS12_02479 PF00486 Transcriptional regulatory protein, C terminal VSVS12_02480 PF04381 Putative exonuclease, RdgC VSVS12_02482 PF00037 4Fe-4S binding domain VSVS12_02484 PF03411 Penicillin-insensitive murein endopeptidase VSVS12_02486 PF02355 Protein export membrane protein VSVS12_02486 PF07549 SecD/SecF GG Motif VSVS12_02487 PF13721 SecD export protein N-terminal TM region VSVS12_02487 PF07549 SecD/SecF GG Motif VSVS12_02487 PF02355 Protein export membrane protein VSVS12_02488 PF02699 Preprotein translocase subunit VSVS12_02489 PF01702 Queuine tRNA-ribosyltransferase VSVS12_02490 PF02547 Queuosine biosynthesis protein VSVS12_02491 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_02491 PF12729 Four helix bundle sensory module for signal transduction VSVS12_02491 PF00672 HAMP domain VSVS12_02492 PF00571 CBS domain VSVS12_02493 PF00463 Isocitrate lyase family VSVS12_02494 PF01274 Malate synthase VSVS12_02495 PF03466 LysR substrate binding domain VSVS12_02495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_02496 PF10417 C-terminal domain of 1-Cys peroxiredoxin VSVS12_02496 PF00578 AhpC/TSA family VSVS12_02499 PF14602 Hexapeptide repeat of succinyl-transferase VSVS12_02499 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle VSVS12_02500 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VSVS12_02500 PF01464 Transglycosylase SLT domain VSVS12_02505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_02505 PF03466 LysR substrate binding domain VSVS12_02507 PF00691 OmpA family VSVS12_02514 PF00437 Type II/IV secretion system protein VSVS12_02517 PF13629 Pilus formation protein N terminal region VSVS12_02517 PF00263 Bacterial type II and III secretion system protein VSVS12_02517 PF04972 BON domain VSVS12_02524 PF00501 AMP-binding enzyme VSVS12_02525 PF03466 LysR substrate binding domain VSVS12_02525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_02526 PF03144 Elongation factor Tu domain 2 VSVS12_02526 PF00679 Elongation factor G C-terminus VSVS12_02526 PF14492 Elongation Factor G, domain II VSVS12_02526 PF00009 Elongation factor Tu GTP binding domain VSVS12_02526 PF03764 Elongation factor G, domain IV VSVS12_02527 PF18073 Rubredoxin metal binding domain VSVS12_02529 PF18429 Domain of unknown function (DUF5609) VSVS12_02531 PF13333 Integrase core domain VSVS12_02531 PF00665 Integrase core domain VSVS12_02531 PF13276 HTH-like domain VSVS12_02532 PF01527 Transposase VSVS12_02533 PF01048 Phosphorylase superfamily VSVS12_02534 PF01676 Metalloenzyme superfamily VSVS12_02535 PF02885 Glycosyl transferase family, helical bundle domain VSVS12_02535 PF00591 Glycosyl transferase family, a/b domain VSVS12_02535 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain VSVS12_02536 PF01791 DeoC/LacD family aldolase VSVS12_02537 PF01773 Na+ dependent nucleoside transporter N-terminus VSVS12_02537 PF07670 Nucleoside recognition VSVS12_02537 PF07662 Na+ dependent nucleoside transporter C-terminus VSVS12_02538 PF01026 TatD related DNase VSVS12_02540 PF03883 Peroxide stress protein YaaA VSVS12_02541 PF01235 Sodium:alanine symporter family VSVS12_02544 PF03167 Uracil DNA glycosylase superfamily VSVS12_02545 PF01261 Xylose isomerase-like TIM barrel VSVS12_02546 PF01228 Glycine radical VSVS12_02547 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading VSVS12_02547 PF18416 N-acetylglucosamine binding protein domain 2 VSVS12_02548 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_02548 PF03466 LysR substrate binding domain VSVS12_02549 PF01925 Sulfite exporter TauE/SafE VSVS12_02550 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VSVS12_02550 PF02142 MGS-like domain VSVS12_02550 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VSVS12_02551 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VSVS12_02551 PF00117 Glutamine amidotransferase class-I VSVS12_02552 PF05173 Dihydrodipicolinate reductase, C-terminus VSVS12_02552 PF01113 Dihydrodipicolinate reductase, N-terminus VSVS12_02553 PF00293 NUDIX domain VSVS12_02554 PF02810 SEC-C motif VSVS12_02554 PF07517 SecA DEAD-like domain VSVS12_02554 PF01043 SecA preprotein cross-linking domain VSVS12_02554 PF07516 SecA Wing and Scaffold domain VSVS12_02556 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase VSVS12_02557 PF12327 FtsZ family, C-terminal domain VSVS12_02557 PF00091 Tubulin/FtsZ family, GTPase domain VSVS12_02558 PF02491 SHS2 domain inserted in FTSA VSVS12_02559 PF08478 POTRA domain, FtsQ-type VSVS12_02559 PF03799 Cell division protein FtsQ VSVS12_02560 PF08245 Mur ligase middle domain VSVS12_02560 PF02875 Mur ligase family, glutamate ligase domain VSVS12_02560 PF01225 Mur ligase family, catalytic domain VSVS12_02561 PF03033 Glycosyltransferase family 28 N-terminal domain VSVS12_02561 PF04101 Glycosyltransferase family 28 C-terminal domain VSVS12_02562 PF01098 Cell cycle protein VSVS12_02563 PF08245 Mur ligase middle domain VSVS12_02563 PF02875 Mur ligase family, glutamate ligase domain VSVS12_02564 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 VSVS12_02564 PF00953 Glycosyl transferase family 4 VSVS12_02565 PF08245 Mur ligase middle domain VSVS12_02565 PF01225 Mur ligase family, catalytic domain VSVS12_02565 PF02875 Mur ligase family, glutamate ligase domain VSVS12_02566 PF02875 Mur ligase family, glutamate ligase domain VSVS12_02566 PF01225 Mur ligase family, catalytic domain VSVS12_02566 PF08245 Mur ligase middle domain VSVS12_02567 PF03717 Penicillin-binding Protein dimerisation domain VSVS12_02567 PF00905 Penicillin binding protein transpeptidase domain VSVS12_02568 PF04999 Cell division protein FtsL VSVS12_02570 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VSVS12_02571 PF04348 LppC putative lipoprotein VSVS12_02572 PF02021 Uncharacterised protein family UPF0102 VSVS12_02573 PF13580 SIS domain VSVS12_02574 PF04972 BON domain VSVS12_02576 PF04386 Stringent starvation protein B VSVS12_02577 PF00043 Glutathione S-transferase, C-terminal domain VSVS12_02577 PF02798 Glutathione S-transferase, N-terminal domain VSVS12_02578 PF02167 Cytochrome C1 family VSVS12_02579 PF00032 Cytochrome b(C-terminal)/b6/petD VSVS12_02579 PF00033 Cytochrome b/b6/petB VSVS12_02580 PF00355 Rieske [2Fe-2S] domain VSVS12_02580 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal VSVS12_02581 PF00380 Ribosomal protein S9/S16 VSVS12_02584 PF03969 AFG1-like ATPase VSVS12_02585 PF06295 Protein of unknown function (DUF1043) VSVS12_02586 PF00595 PDZ domain VSVS12_02587 PF13180 PDZ domain VSVS12_02588 PF00521 DNA gyrase/topoisomerase IV, subunit A VSVS12_02588 PF03989 DNA gyrase C-terminal domain, beta-propeller VSVS12_02589 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_02589 PF00986 DNA gyrase B subunit, carboxyl terminus VSVS12_02589 PF00204 DNA gyrase B VSVS12_02589 PF01751 Toprim domain VSVS12_02590 PF05728 Uncharacterised protein family (UPF0227) VSVS12_02591 PF00149 Calcineurin-like phosphoesterase VSVS12_02592 PF06853 Protein of unknown function (DUF1249) VSVS12_02593 PF00293 NUDIX domain VSVS12_02594 PF02321 Outer membrane efflux protein VSVS12_02595 PF13006 Insertion element 4 transposase N-terminal VSVS12_02595 PF01609 Transposase DDE domain VSVS12_02596 PF00158 Sigma-54 interaction domain VSVS12_02596 PF00072 Response regulator receiver domain VSVS12_02596 PF02954 Bacterial regulatory protein, Fis family VSVS12_02597 PF01336 OB-fold nucleic acid binding domain VSVS12_02597 PF00152 tRNA synthetases class II (D, K and N) VSVS12_02598 PF03462 PCRF domain VSVS12_02598 PF00472 RF-1 domain VSVS12_02599 PF05525 Branched-chain amino acid transport protein VSVS12_02600 PF05175 Methyltransferase small domain VSVS12_02601 PF00270 DEAD/DEAH box helicase VSVS12_02601 PF00271 Helicase conserved C-terminal domain VSVS12_02602 PF03144 Elongation factor Tu domain 2 VSVS12_02602 PF16658 Class II release factor RF3, C-terminal domain VSVS12_02602 PF00009 Elongation factor Tu GTP binding domain VSVS12_02603 PF00583 Acetyltransferase (GNAT) family VSVS12_02605 PF13508 Acetyltransferase (GNAT) domain VSVS12_02607 PF03707 Bacterial signalling protein N terminal repeat VSVS12_02607 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_02607 PF00563 EAL domain VSVS12_02610 PF02872 5'-nucleotidase, C-terminal domain VSVS12_02610 PF00149 Calcineurin-like phosphoesterase VSVS12_02612 PF01554 MatE VSVS12_02614 PF07719 Tetratricopeptide repeat VSVS12_02614 PF13181 Tetratricopeptide repeat VSVS12_02616 PF00312 Ribosomal protein S15 VSVS12_02617 PF01048 Phosphorylase superfamily VSVS12_02619 PF01497 Periplasmic binding protein VSVS12_02620 PF03458 UPF0126 domain VSVS12_02621 PF14821 Threonine synthase N terminus VSVS12_02621 PF00291 Pyridoxal-phosphate dependent enzyme VSVS12_02622 PF00288 GHMP kinases N terminal domain VSVS12_02622 PF08544 GHMP kinases C terminal VSVS12_02623 PF13840 ACT domain VSVS12_02623 PF01842 ACT domain VSVS12_02623 PF00696 Amino acid kinase family VSVS12_02623 PF00742 Homoserine dehydrogenase VSVS12_02623 PF03447 Homoserine dehydrogenase, NAD binding domain VSVS12_02625 PF03737 Aldolase/RraA VSVS12_02627 PF00072 Response regulator receiver domain VSVS12_02627 PF00486 Transcriptional regulatory protein, C terminal VSVS12_02629 PF03710 Glutamate-ammonia ligase adenylyltransferase VSVS12_02629 PF08335 GlnD PII-uridylyltransferase VSVS12_02630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_02630 PF02743 Cache domain VSVS12_02630 PF00672 HAMP domain VSVS12_02631 PF00520 Ion transport protein VSVS12_02631 PF00027 Cyclic nucleotide-binding domain VSVS12_02632 PF01928 CYTH domain VSVS12_02633 PF01865 Protein of unknown function DUF47 VSVS12_02634 PF01384 Phosphate transporter family VSVS12_02635 PF08239 Bacterial SH3 domain VSVS12_02637 PF01471 Putative peptidoglycan binding domain VSVS12_02637 PF13401 AAA domain VSVS12_02638 PF12627 Probable RNA and SrmB- binding site of polymerase A VSVS12_02638 PF01743 Poly A polymerase head domain VSVS12_02638 PF01966 HD domain VSVS12_02639 PF00113 Enolase, C-terminal TIM barrel domain VSVS12_02639 PF03952 Enolase, N-terminal domain VSVS12_02640 PF06418 CTP synthase N-terminus VSVS12_02640 PF00117 Glutamine amidotransferase class-I VSVS12_02641 PF03819 MazG nucleotide pyrophosphohydrolase domain VSVS12_02642 PF04607 Region found in RelA / SpoT proteins VSVS12_02642 PF02824 TGS domain VSVS12_02642 PF13291 ACT domain VSVS12_02643 PF01938 TRAM domain VSVS12_02643 PF05958 tRNA (Uracil-5-)-methyltransferase VSVS12_02644 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_02644 PF00672 HAMP domain VSVS12_02644 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_02644 PF01627 Hpt domain VSVS12_02644 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VSVS12_02644 PF00072 Response regulator receiver domain VSVS12_02645 PF01648 4'-phosphopantetheinyl transferase superfamily VSVS12_02646 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ VSVS12_02647 PF11967 Recombination protein O N terminal VSVS12_02647 PF02565 Recombination protein O C terminal VSVS12_02648 PF07650 KH domain VSVS12_02648 PF01926 50S ribosome-binding GTPase VSVS12_02649 PF00035 Double-stranded RNA binding motif VSVS12_02649 PF14622 Ribonuclease-III-like VSVS12_02650 PF10502 Signal peptidase, peptidase S26 VSVS12_02651 PF06421 GTP-binding protein LepA C-terminus VSVS12_02651 PF00009 Elongation factor Tu GTP binding domain VSVS12_02651 PF03144 Elongation factor Tu domain 2 VSVS12_02651 PF00679 Elongation factor G C-terminus VSVS12_02653 PF17188 MucB/RseB C-terminal domain VSVS12_02653 PF03888 MucB/RseB N-terminal domain VSVS12_02654 PF03872 Anti sigma-E protein RseA, N-terminal domain VSVS12_02654 PF03873 Anti sigma-E protein RseA, C-terminal domain VSVS12_02655 PF08281 Sigma-70, region 4 VSVS12_02655 PF04542 Sigma-70 region 2 VSVS12_02656 PF02910 Fumarate reductase flavoprotein C-term VSVS12_02656 PF00890 FAD binding domain VSVS12_02658 PF03937 Flavinator of succinate dehydrogenase VSVS12_02662 PF01494 FAD binding domain VSVS12_02663 PF01494 FAD binding domain VSVS12_02666 PF01812 5-formyltetrahydrofolate cyclo-ligase family VSVS12_02667 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VSVS12_02668 PF01842 ACT domain VSVS12_02668 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VSVS12_02668 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VSVS12_02669 PF10369 Small subunit of acetolactate synthase VSVS12_02670 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VSVS12_02670 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VSVS12_02670 PF00205 Thiamine pyrophosphate enzyme, central domain VSVS12_02671 PF00501 AMP-binding enzyme VSVS12_02672 PF03466 LysR substrate binding domain VSVS12_02672 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_02673 PF08502 LeuA allosteric (dimerisation) domain VSVS12_02673 PF00682 HMGL-like VSVS12_02674 PF00180 Isocitrate/isopropylmalate dehydrogenase VSVS12_02675 PF00330 Aconitase family (aconitate hydratase) VSVS12_02676 PF00694 Aconitase C-terminal domain VSVS12_02687 PF00356 Bacterial regulatory proteins, lacI family VSVS12_02688 PF04794 YdjC-like protein VSVS12_02689 PF02056 Family 4 glycosyl hydrolase VSVS12_02689 PF11975 Family 4 glycosyl hydrolase C-terminal domain VSVS12_02690 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit VSVS12_02691 PF02378 Phosphotransferase system, EIIC VSVS12_02692 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VSVS12_02693 PF12729 Four helix bundle sensory module for signal transduction VSVS12_02693 PF00672 HAMP domain VSVS12_02693 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_02696 PF00719 Inorganic pyrophosphatase VSVS12_02709 PF05746 DALR anticodon binding domain VSVS12_02709 PF03485 Arginyl tRNA synthetase N terminal domain VSVS12_02709 PF00750 tRNA synthetases class I (R) VSVS12_02712 PF13280 WYL domain VSVS12_02712 PF08220 DeoR-like helix-turn-helix domain VSVS12_02739 PF02664 S-Ribosylhomocysteinase (LuxS) VSVS12_02741 PF04262 Glutamate-cysteine ligase VSVS12_02742 PF00675 Insulinase (Peptidase family M16) VSVS12_02742 PF05193 Peptidase M16 inactive domain VSVS12_02743 PF09335 SNARE associated Golgi protein VSVS12_02745 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VSVS12_02746 PF00364 Biotin-requiring enzyme VSVS12_02746 PF02436 Conserved carboxylase domain VSVS12_02746 PF00682 HMGL-like VSVS12_02747 PF04277 Oxaloacetate decarboxylase, gamma chain VSVS12_02756 PF02599 Global regulator protein family VSVS12_02757 PF01842 ACT domain VSVS12_02757 PF00696 Amino acid kinase family VSVS12_02757 PF13840 ACT domain VSVS12_02758 PF02272 DHHA1 domain VSVS12_02758 PF01411 tRNA synthetases class II (A) VSVS12_02758 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VSVS12_02759 PF00154 recA bacterial DNA recombination protein VSVS12_02760 PF02464 Competence-damaged protein VSVS12_02761 PF00488 MutS domain V VSVS12_02761 PF01624 MutS domain I VSVS12_02761 PF05190 MutS family domain IV VSVS12_02761 PF05188 MutS domain II VSVS12_02761 PF05192 MutS domain III VSVS12_02763 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VSVS12_02763 PF00437 Type II/IV secretion system protein VSVS12_02764 PF00482 Type II secretion system (T2SS), protein F VSVS12_02765 PF01478 Type IV leader peptidase family VSVS12_02765 PF06750 Bacterial Peptidase A24 N-terminal domain VSVS12_02766 PF01121 Dephospho-CoA kinase VSVS12_02767 PF07072 Cell division protein VSVS12_02768 PF03884 DNA gyrase inhibitor YacG VSVS12_02769 PF01245 Ribosomal protein L19 VSVS12_02770 PF01746 tRNA (Guanine-1)-methyltransferase VSVS12_02772 PF00886 Ribosomal protein S16 VSVS12_02773 PF02978 Signal peptide binding domain VSVS12_02773 PF02881 SRP54-type protein, helical bundle domain VSVS12_02773 PF00448 SRP54-type protein, GTPase domain VSVS12_02774 PF01578 Cytochrome C assembly protein VSVS12_02775 PF01595 Cyclin M transmembrane N-terminal domain VSVS12_02775 PF03471 Transporter associated domain VSVS12_02775 PF00571 CBS domain VSVS12_02776 PF04545 Sigma-70, region 4 VSVS12_02776 PF04539 Sigma-70 region 3 VSVS12_02776 PF04542 Sigma-70 region 2 VSVS12_02776 PF00140 Sigma-70 factor, region 1.2 VSVS12_02777 PF01551 Peptidase family M23 VSVS12_02777 PF01476 LysM domain VSVS12_02779 PF01975 Survival protein SurE VSVS12_02780 PF01142 tRNA pseudouridine synthase D (TruD) VSVS12_02781 PF02542 YgbB family VSVS12_02782 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VSVS12_02783 PF04977 Septum formation initiator VSVS12_02785 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VSVS12_02786 PF02152 Dihydroneopterin aldolase VSVS12_02787 PF02660 Glycerol-3-phosphate acyltransferase VSVS12_02788 PF00561 alpha/beta hydrolase fold VSVS12_02789 PF00814 Glycoprotease family VSVS12_02790 PF01165 Ribosomal protein S21 VSVS12_02791 PF09424 Yqey-like protein VSVS12_02792 PF01807 CHC2 zinc finger VSVS12_02792 PF08278 DNA primase DnaG DnaB-binding VSVS12_02792 PF10410 DnaB-helicase binding domain of primase VSVS12_02792 PF08275 DNA primase catalytic core, N-terminal domain VSVS12_02793 PF04546 Sigma-70, non-essential region VSVS12_02793 PF04545 Sigma-70, region 4 VSVS12_02793 PF04539 Sigma-70 region 3 VSVS12_02793 PF04542 Sigma-70 region 2 VSVS12_02793 PF00140 Sigma-70 factor, region 1.2 VSVS12_02793 PF03979 Sigma-70 factor, region 1.1 VSVS12_02795 PF00589 Phage integrase family VSVS12_02795 PF13356 Arm DNA-binding domain VSVS12_02796 PF00665 Integrase core domain VSVS12_02796 PF13276 HTH-like domain VSVS12_02796 PF13333 Integrase core domain VSVS12_02797 PF01527 Transposase VSVS12_02798 PF02743 Cache domain VSVS12_02798 PF00672 HAMP domain VSVS12_02798 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_02810 PF04002 RadC-like JAB domain VSVS12_02822 PF08448 PAS fold VSVS12_02822 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_02823 PF00860 Permease family VSVS12_02826 PF03480 Bacterial extracellular solute-binding protein, family 7 VSVS12_02827 PF00893 Small Multidrug Resistance protein VSVS12_02828 PF08240 Alcohol dehydrogenase GroES-like domain VSVS12_02828 PF00107 Zinc-binding dehydrogenase VSVS12_02830 PF00765 Autoinducer synthase VSVS12_02832 PF00196 Bacterial regulatory proteins, luxR family VSVS12_02832 PF03472 Autoinducer binding domain VSVS12_02833 PF01380 SIS domain VSVS12_02834 PF00455 DeoR C terminal sensor domain VSVS12_02834 PF08220 DeoR-like helix-turn-helix domain VSVS12_02835 PF00224 Pyruvate kinase, barrel domain VSVS12_02835 PF02887 Pyruvate kinase, alpha/beta domain VSVS12_02836 PF04402 Protein of unknown function (DUF541) VSVS12_02837 PF03466 LysR substrate binding domain VSVS12_02837 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_02838 PF01810 LysE type translocator VSVS12_02839 PF05552 Conserved TM helix VSVS12_02839 PF00924 Mechanosensitive ion channel VSVS12_02840 PF01116 Fructose-bisphosphate aldolase class-II VSVS12_02841 PF00162 Phosphoglycerate kinase VSVS12_02842 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VSVS12_02842 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VSVS12_02844 PF02780 Transketolase, C-terminal domain VSVS12_02844 PF00456 Transketolase, thiamine diphosphate binding domain VSVS12_02844 PF02779 Transketolase, pyrimidine binding domain VSVS12_02845 PF02773 S-adenosylmethionine synthetase, C-terminal domain VSVS12_02845 PF02772 S-adenosylmethionine synthetase, central domain VSVS12_02845 PF00438 S-adenosylmethionine synthetase, N-terminal domain VSVS12_02848 PF17283 SprT-like zinc ribbon domain VSVS12_02848 PF10263 SprT-like family VSVS12_02849 PF04231 Endonuclease I VSVS12_02850 PF04452 RNA methyltransferase VSVS12_02851 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VSVS12_02851 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VSVS12_02852 PF02622 Uncharacterized ACR, COG1678 VSVS12_02853 PF03652 Holliday junction resolvase VSVS12_02854 PF01523 Putative modulator of DNA gyrase VSVS12_02855 PF04751 Protein of unknown function (DUF615) VSVS12_02856 PF00005 ABC transporter VSVS12_02857 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_02860 PF02441 Flavoprotein VSVS12_02861 PF02875 Mur ligase family, glutamate ligase domain VSVS12_02861 PF08245 Mur ligase middle domain VSVS12_02861 PF01225 Mur ligase family, catalytic domain VSVS12_02862 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain VSVS12_02863 PF00719 Inorganic pyrophosphatase VSVS12_02865 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like VSVS12_02866 PF04357 TamB, inner membrane protein subunit of TAM complex VSVS12_02867 PF01103 Surface antigen VSVS12_02867 PF17243 POTRA domain TamA domain 1 VSVS12_02867 PF07244 Surface antigen variable number repeat VSVS12_02868 PF01625 Peptide methionine sulfoxide reductase VSVS12_02869 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VSVS12_02872 PF00005 ABC transporter VSVS12_02879 PF00342 Phosphoglucose isomerase VSVS12_02880 PF01894 Uncharacterised protein family UPF0047 VSVS12_02881 PF00842 Alanine racemase, C-terminal domain VSVS12_02881 PF01168 Alanine racemase, N-terminal domain VSVS12_02882 PF03796 DnaB-like helicase C terminal domain VSVS12_02882 PF00772 DnaB-like helicase N terminal domain VSVS12_02884 PF03948 Ribosomal protein L9, C-terminal domain VSVS12_02884 PF01281 Ribosomal protein L9, N-terminal domain VSVS12_02885 PF01084 Ribosomal protein S18 VSVS12_02886 PF00436 Single-strand binding protein family VSVS12_02887 PF01250 Ribosomal protein S6 VSVS12_02888 PF00210 Ferritin-like domain VSVS12_02889 PF04324 BFD-like [2Fe-2S] binding domain VSVS12_02890 PF00009 Elongation factor Tu GTP binding domain VSVS12_02890 PF03144 Elongation factor Tu domain 2 VSVS12_02890 PF03143 Elongation factor Tu C-terminal domain VSVS12_02891 PF00009 Elongation factor Tu GTP binding domain VSVS12_02891 PF03144 Elongation factor Tu domain 2 VSVS12_02891 PF14492 Elongation Factor G, domain II VSVS12_02891 PF00679 Elongation factor G C-terminus VSVS12_02891 PF03764 Elongation factor G, domain IV VSVS12_02892 PF00177 Ribosomal protein S7p/S5e VSVS12_02893 PF00164 Ribosomal protein S12/S23 VSVS12_02895 PF02635 DsrE/DsrF-like family VSVS12_02896 PF02635 DsrE/DsrF-like family VSVS12_02897 PF08348 YheO-like PAS domain VSVS12_02897 PF13309 HTH domain VSVS12_02898 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VSVS12_02898 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VSVS12_02901 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) VSVS12_02902 PF01145 SPFH domain / Band 7 family VSVS12_02903 PF01145 SPFH domain / Band 7 family VSVS12_02903 PF12221 Bacterial membrane protein N terminal VSVS12_02904 PF01926 50S ribosome-binding GTPase VSVS12_02904 PF13167 GTP-binding GTPase N-terminal VSVS12_02904 PF16360 GTP-binding GTPase Middle Region VSVS12_02905 PF17209 Hfq protein VSVS12_02907 PF08676 MutL C terminal dimerisation domain VSVS12_02907 PF01119 DNA mismatch repair protein, C-terminal domain VSVS12_02908 PF01520 N-acetylmuramoyl-L-alanine amidase VSVS12_02909 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE VSVS12_02910 PF08331 Domain of unknown function (DUF1730) VSVS12_02923 PF00929 Exonuclease VSVS12_02924 PF03193 RsgA GTPase VSVS12_02925 PF02666 Phosphatidylserine decarboxylase VSVS12_02926 PF02080 TrkA-C domain VSVS12_02926 PF03600 Citrate transporter VSVS12_02928 PF06415 BPG-independent PGAM N-terminus (iPGM_N) VSVS12_02928 PF01676 Metalloenzyme superfamily VSVS12_02929 PF01551 Peptidase family M23 VSVS12_02931 PF08360 QacR-like protein, C-terminal region VSVS12_02931 PF00440 Bacterial regulatory proteins, tetR family VSVS12_02932 PF01208 Uroporphyrinogen decarboxylase (URO-D) VSVS12_02933 PF09297 NADH pyrophosphatase zinc ribbon domain VSVS12_02933 PF00293 NUDIX domain VSVS12_02934 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ VSVS12_02935 PF05000 RNA polymerase Rpb1, domain 4 VSVS12_02935 PF04997 RNA polymerase Rpb1, domain 1 VSVS12_02935 PF04983 RNA polymerase Rpb1, domain 3 VSVS12_02935 PF00623 RNA polymerase Rpb1, domain 2 VSVS12_02935 PF04998 RNA polymerase Rpb1, domain 5 VSVS12_02936 PF04561 RNA polymerase Rpb2, domain 2 VSVS12_02936 PF04560 RNA polymerase Rpb2, domain 7 VSVS12_02936 PF10385 RNA polymerase beta subunit external 1 domain VSVS12_02936 PF04565 RNA polymerase Rpb2, domain 3 VSVS12_02936 PF00562 RNA polymerase Rpb2, domain 6 VSVS12_02936 PF04563 RNA polymerase beta subunit VSVS12_02938 PF00466 Ribosomal protein L10 VSVS12_02940 PF00298 Ribosomal protein L11, RNA binding domain VSVS12_02940 PF03946 Ribosomal protein L11, N-terminal domain VSVS12_02941 PF02357 Transcription termination factor nusG VSVS12_02941 PF00467 KOW motif VSVS12_02942 PF00584 SecE/Sec61-gamma subunits of protein translocation complex VSVS12_02943 PF00009 Elongation factor Tu GTP binding domain VSVS12_02943 PF03144 Elongation factor Tu domain 2 VSVS12_02943 PF03143 Elongation factor Tu C-terminal domain VSVS12_02948 PF00485 Phosphoribulokinase / Uridine kinase family VSVS12_02951 PF00121 Triosephosphate isomerase VSVS12_02952 PF01554 MatE VSVS12_02953 PF03737 Aldolase/RraA VSVS12_02954 PF01040 UbiA prenyltransferase family VSVS12_02955 PF09285 Elongation factor P, C-terminal VSVS12_02955 PF01132 Elongation factor P (EF-P) OB domain VSVS12_02955 PF08207 Elongation factor P (EF-P) KOW-like domain VSVS12_02956 PF04055 Radical SAM superfamily VSVS12_02958 PF02308 MgtC family VSVS12_02959 PF00365 Phosphofructokinase VSVS12_02960 PF01545 Cation efflux family VSVS12_02960 PF16916 Dimerisation domain of Zinc Transporter VSVS12_02961 PF07813 LTXXQ motif family protein VSVS12_02962 PF00072 Response regulator receiver domain VSVS12_02962 PF00486 Transcriptional regulatory protein, C terminal VSVS12_02963 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_02963 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_02963 PF16527 Two-component sensor protein CpxA, periplasmic domain VSVS12_02963 PF00672 HAMP domain VSVS12_02964 PF00588 SpoU rRNA Methylase family VSVS12_02965 PF04186 FxsA cytoplasmic membrane protein VSVS12_02966 PF10415 Fumarase C C-terminus VSVS12_02966 PF00206 Lyase VSVS12_02967 PF03605 Anaerobic c4-dicarboxylate membrane transporter VSVS12_02968 PF11412 Disulphide bond corrector protein DsbC VSVS12_02968 PF02683 Cytochrome C biogenesis protein transmembrane region VSVS12_02969 PF00072 Response regulator receiver domain VSVS12_02969 PF00196 Bacterial regulatory proteins, luxR family VSVS12_02970 PF01914 MarC family integral membrane protein VSVS12_02972 PF00474 Sodium:solute symporter family VSVS12_02974 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_02974 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_02974 PF09308 LuxQ, periplasmic VSVS12_02974 PF00072 Response regulator receiver domain VSVS12_02975 PF12832 MFS_1 like family VSVS12_02978 PF16177 Acetyl-coenzyme A synthetase N-terminus VSVS12_02978 PF00501 AMP-binding enzyme VSVS12_02978 PF13193 AMP-binding enzyme C-terminal domain VSVS12_02979 PF01220 Dehydroquinase class II VSVS12_02980 PF00364 Biotin-requiring enzyme VSVS12_02981 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VSVS12_02981 PF02785 Biotin carboxylase C-terminal domain VSVS12_02981 PF00289 Biotin carboxylase, N-terminal domain VSVS12_02983 PF01207 Dihydrouridine synthase (Dus) VSVS12_02984 PF02954 Bacterial regulatory protein, Fis family VSVS12_02985 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_02985 PF05230 MASE2 domain VSVS12_02986 PF13411 MerR HTH family regulatory protein VSVS12_02987 PF01808 AICARFT/IMPCHase bienzyme VSVS12_02987 PF02142 MGS-like domain VSVS12_02988 PF02844 Phosphoribosylglycinamide synthetase, N domain VSVS12_02988 PF02843 Phosphoribosylglycinamide synthetase, C domain VSVS12_02988 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VSVS12_02990 PF00216 Bacterial DNA-binding protein VSVS12_02991 PF01595 Cyclin M transmembrane N-terminal domain VSVS12_02991 PF00571 CBS domain VSVS12_02992 PF04222 Protein of unknown function (DUF416) VSVS12_02993 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VSVS12_02994 PF03167 Uracil DNA glycosylase superfamily VSVS12_03011 PF01177 Asp/Glu/Hydantoin racemase VSVS12_03013 PF07715 TonB-dependent Receptor Plug Domain VSVS12_03013 PF00593 TonB dependent receptor VSVS12_03014 PF05958 tRNA (Uracil-5-)-methyltransferase VSVS12_03016 PF00440 Bacterial regulatory proteins, tetR family VSVS12_03019 PF13302 Acetyltransferase (GNAT) domain VSVS12_03020 PF12945 Flagellar protein YcgR VSVS12_03020 PF07238 PilZ domain VSVS12_03022 PF00664 ABC transporter transmembrane region VSVS12_03022 PF00005 ABC transporter VSVS12_03024 PF01037 Lrp/AsnC ligand binding domain VSVS12_03026 PF00474 Sodium:solute symporter family VSVS12_03028 PF18327 Proline utilization A proline dehydrogenase N-terminal domain VSVS12_03028 PF14850 DNA-binding domain of Proline dehydrogenase VSVS12_03028 PF01619 Proline dehydrogenase VSVS12_03028 PF00171 Aldehyde dehydrogenase family VSVS12_03029 PF12833 Helix-turn-helix domain VSVS12_03031 PF03781 Sulfatase-modifying factor enzyme 1 VSVS12_03033 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region VSVS12_03033 PF01243 Pyridoxamine 5'-phosphate oxidase VSVS12_03035 PF00529 HlyD membrane-fusion protein of T1SS VSVS12_03038 PF03412 Peptidase C39 family VSVS12_03038 PF00664 ABC transporter transmembrane region VSVS12_03038 PF00005 ABC transporter VSVS12_03039 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VSVS12_03042 PF02630 SCO1/SenC VSVS12_03044 PF03193 RsgA GTPase VSVS12_03045 PF00375 Sodium:dicarboxylate symporter family VSVS12_03048 PF06942 GlpM protein VSVS12_03051 PF00970 Oxidoreductase FAD-binding domain VSVS12_03051 PF00175 Oxidoreductase NAD-binding domain VSVS12_03053 PF00561 alpha/beta hydrolase fold VSVS12_03054 PF00472 RF-1 domain VSVS12_03057 PF01047 MarR family VSVS12_03061 PF01209 ubiE/COQ5 methyltransferase family VSVS12_03063 PF00375 Sodium:dicarboxylate symporter family VSVS12_03064 PF06803 Protein of unknown function (DUF1232) VSVS12_03065 PF01546 Peptidase family M20/M25/M40 VSVS12_03065 PF07687 Peptidase dimerisation domain VSVS12_03066 PF07670 Nucleoside recognition VSVS12_03067 PF07670 Nucleoside recognition VSVS12_03068 PF03600 Citrate transporter VSVS12_03070 PF00270 DEAD/DEAH box helicase VSVS12_03070 PF00271 Helicase conserved C-terminal domain VSVS12_03072 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VSVS12_03072 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain VSVS12_03073 PF12833 Helix-turn-helix domain VSVS12_03073 PF00730 HhH-GPD superfamily base excision DNA repair protein VSVS12_03073 PF06029 AlkA N-terminal domain VSVS12_03073 PF02805 Metal binding domain of Ada VSVS12_03075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_03075 PF03466 LysR substrate binding domain VSVS12_03077 PF17810 Arginine decarboxylase helical bundle domain VSVS12_03077 PF17944 Arginine decarboxylase C-terminal helical extension VSVS12_03077 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VSVS12_03078 PF00491 Arginase family VSVS12_03080 PF00939 Sodium:sulfate symporter transmembrane region VSVS12_03081 PF12697 Alpha/beta hydrolase family VSVS12_03085 PF01124 MAPEG family VSVS12_03086 PF00128 Alpha amylase, catalytic domain VSVS12_03086 PF02806 Alpha amylase, C-terminal all-beta domain VSVS12_03086 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VSVS12_03087 PF02446 4-alpha-glucanotransferase VSVS12_03088 PF00343 Carbohydrate phosphorylase VSVS12_03089 PF00196 Bacterial regulatory proteins, luxR family VSVS12_03089 PF17874 MalT-like TPR region VSVS12_03090 PF00881 Nitroreductase family VSVS12_03092 PF00704 Glycosyl hydrolases family 18 VSVS12_03093 PF00561 alpha/beta hydrolase fold VSVS12_03094 PF02112 cAMP phosphodiesterases class-II VSVS12_03095 PF00367 phosphotransferase system, EIIB VSVS12_03095 PF02378 Phosphotransferase system, EIIC VSVS12_03096 PF00232 Glycosyl hydrolase family 1 VSVS12_03098 PF00583 Acetyltransferase (GNAT) family VSVS12_03103 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VSVS12_03103 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VSVS12_03104 PF02653 Branched-chain amino acid transport system / permease component VSVS12_03105 PF02653 Branched-chain amino acid transport system / permease component VSVS12_03106 PF00005 ABC transporter VSVS12_03109 PF03150 Di-haem cytochrome c peroxidase VSVS12_03109 PF00034 Cytochrome c VSVS12_03112 PF00080 Copper/zinc superoxide dismutase (SODC) VSVS12_03113 PF01610 Transposase VSVS12_03113 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 VSVS12_03113 PF13542 Helix-turn-helix domain of transposase family ISL3 VSVS12_03114 PF03466 LysR substrate binding domain VSVS12_03114 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_03123 PF03831 PhnA domain VSVS12_03123 PF08274 PhnA Zinc-Ribbon VSVS12_03124 PF00302 Chloramphenicol acetyltransferase VSVS12_03126 PF00873 AcrB/AcrD/AcrF family VSVS12_03127 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VSVS12_03127 PF00529 HlyD membrane-fusion protein of T1SS VSVS12_03128 PF09905 DNA-binding protein VF530 VSVS12_03131 PF04303 PrpF protein VSVS12_03132 PF00694 Aconitase C-terminal domain VSVS12_03132 PF00330 Aconitase family (aconitate hydratase) VSVS12_03133 PF00285 Citrate synthase, C-terminal domain VSVS12_03137 PF08803 Putative mono-oxygenase ydhR VSVS12_03138 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_03138 PF03466 LysR substrate binding domain VSVS12_03139 PF07646 Kelch motif VSVS12_03140 PF01344 Kelch motif VSVS12_03141 PF01418 Helix-turn-helix domain, rpiR family VSVS12_03141 PF01380 SIS domain VSVS12_03142 PF00701 Dihydrodipicolinate synthetase family VSVS12_03143 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VSVS12_03144 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VSVS12_03145 PF03480 Bacterial extracellular solute-binding protein, family 7 VSVS12_03146 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase VSVS12_03147 PF00480 ROK family VSVS12_03148 PF01979 Amidohydrolase family VSVS12_03153 PF06628 Catalase-related immune-responsive VSVS12_03153 PF00199 Catalase VSVS12_03154 PF03222 Tryptophan/tyrosine permease family VSVS12_03155 PF03222 Tryptophan/tyrosine permease family VSVS12_03157 PF00367 phosphotransferase system, EIIB VSVS12_03157 PF02378 Phosphotransferase system, EIIC VSVS12_03158 PF01546 Peptidase family M20/M25/M40 VSVS12_03159 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VSVS12_03160 PF00456 Transketolase, thiamine diphosphate binding domain VSVS12_03160 PF02779 Transketolase, pyrimidine binding domain VSVS12_03160 PF02780 Transketolase, C-terminal domain VSVS12_03161 PF00923 Transaldolase/Fructose-6-phosphate aldolase VSVS12_03162 PF13419 Haloacid dehalogenase-like hydrolase VSVS12_03163 PF00465 Iron-containing alcohol dehydrogenase VSVS12_03166 PF08220 DeoR-like helix-turn-helix domain VSVS12_03166 PF00455 DeoR C terminal sensor domain VSVS12_03173 PF00072 Response regulator receiver domain VSVS12_03173 PF00196 Bacterial regulatory proteins, luxR family VSVS12_03174 PF10928 Protein of unknown function (DUF2810) VSVS12_03176 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_03176 PF17200 Single Cache domain 2 VSVS12_03176 PF00672 HAMP domain VSVS12_03177 PF05656 Protein of unknown function (DUF805) VSVS12_03180 PF03466 LysR substrate binding domain VSVS12_03180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_03181 PF13533 Biotin-lipoyl like VSVS12_03183 PF01709 Transcriptional regulator VSVS12_03186 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VSVS12_03186 PF00005 ABC transporter VSVS12_03187 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VSVS12_03187 PF00005 ABC transporter VSVS12_03190 PF18607 ParA helix turn helix domain VSVS12_03190 PF13614 AAA domain VSVS12_03191 PF08775 ParB family VSVS12_03191 PF02195 ParB-like nuclease domain VSVS12_03193 PF01610 Transposase VSVS12_03193 PF13542 Helix-turn-helix domain of transposase family ISL3 VSVS12_03193 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 VSVS12_03194 PF05127 Helicase VSVS12_03194 PF13718 GNAT acetyltransferase 2 VSVS12_03196 PF00072 Response regulator receiver domain VSVS12_03196 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_03197 PF01228 Glycine radical VSVS12_03197 PF02901 Pyruvate formate lyase-like VSVS12_03199 PF07690 Major Facilitator Superfamily VSVS12_03208 PF01555 DNA methylase VSVS12_03210 PF04245 37-kD nucleoid-associated bacterial protein VSVS12_03252 PF09077 Mu B transposition protein, C terminal VSVS12_03252 PF13401 AAA domain VSVS12_03254 PF13693 Winged helix-turn-helix DNA-binding VSVS12_03261 PF07007 Lysozyme inhibitor LprI VSVS12_03262 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VSVS12_03266 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VSVS12_03267 PF00293 NUDIX domain VSVS12_03285 PF13358 DDE superfamily endonuclease VSVS12_03288 PF01872 RibD C-terminal domain VSVS12_03292 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_03292 PF03466 LysR substrate binding domain VSVS12_03293 PF08543 Phosphomethylpyrimidine kinase VSVS12_03294 PF01569 PAP2 superfamily VSVS12_03298 PF00455 DeoR C terminal sensor domain VSVS12_03298 PF08220 DeoR-like helix-turn-helix domain VSVS12_03299 PF00465 Iron-containing alcohol dehydrogenase VSVS12_03301 PF00465 Iron-containing alcohol dehydrogenase VSVS12_03302 PF00596 Class II Aldolase and Adducin N-terminal domain VSVS12_03303 PF03553 Na+/H+ antiporter family VSVS12_03304 PF01008 Initiation factor 2 subunit family VSVS12_03305 PF01636 Phosphotransferase enzyme family VSVS12_03308 PF00583 Acetyltransferase (GNAT) family VSVS12_03312 PF08281 Sigma-70, region 4 VSVS12_03312 PF04542 Sigma-70 region 2 VSVS12_03313 PF02743 Cache domain VSVS12_03313 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_03313 PF00672 HAMP domain VSVS12_03318 PF00672 HAMP domain VSVS12_03318 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_03319 PF11490 DNA polymerase III polC-type N-terminus II VSVS12_03319 PF00929 Exonuclease VSVS12_03319 PF14579 Helix-hairpin-helix motif VSVS12_03319 PF07733 Bacterial DNA polymerase III alpha NTPase domain VSVS12_03319 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VSVS12_03319 PF14480 DNA polymerase III polC-type N-terminus I VSVS12_03319 PF02811 PHP domain VSVS12_03322 PF02001 Protein of unknown function DUF134 VSVS12_03324 PF03475 3-alpha domain VSVS12_03324 PF03473 MOSC domain VSVS12_03325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_03325 PF03466 LysR substrate binding domain VSVS12_03327 PF00392 Bacterial regulatory proteins, gntR family VSVS12_03327 PF07702 UTRA domain VSVS12_03328 PF01209 ubiE/COQ5 methyltransferase family VSVS12_03329 PF01554 MatE VSVS12_03332 PF01380 SIS domain VSVS12_03332 PF01418 Helix-turn-helix domain, rpiR family VSVS12_03333 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VSVS12_03334 PF09261 Alpha mannosidase middle domain VSVS12_03334 PF01074 Glycosyl hydrolases family 38 N-terminal domain VSVS12_03334 PF07748 Glycosyl hydrolases family 38 C-terminal domain VSVS12_03335 PF00128 Alpha amylase, catalytic domain VSVS12_03336 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VSVS12_03336 PF02378 Phosphotransferase system, EIIC VSVS12_03336 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VSVS12_03337 PF01238 Phosphomannose isomerase type I VSVS12_03338 PF00465 Iron-containing alcohol dehydrogenase VSVS12_03343 PF00797 N-acetyltransferase VSVS12_03349 PF00571 CBS domain VSVS12_03349 PF00005 ABC transporter VSVS12_03350 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_03352 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VSVS12_03352 PF12793 Sugar transport-related sRNA regulator N-term VSVS12_03354 PF13520 Amino acid permease VSVS12_03355 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VSVS12_03355 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VSVS12_03355 PF01276 Orn/Lys/Arg decarboxylase, major domain VSVS12_03357 PF03466 LysR substrate binding domain VSVS12_03357 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_03358 PF01773 Na+ dependent nucleoside transporter N-terminus VSVS12_03358 PF07670 Nucleoside recognition VSVS12_03358 PF07662 Na+ dependent nucleoside transporter C-terminus VSVS12_03359 PF00270 DEAD/DEAH box helicase VSVS12_03359 PF00271 Helicase conserved C-terminal domain VSVS12_03360 PF13520 Amino acid permease VSVS12_03361 PF04960 Glutaminase VSVS12_03362 PF00282 Pyridoxal-dependent decarboxylase conserved domain VSVS12_03363 PF03458 UPF0126 domain VSVS12_03367 PF01161 Phosphatidylethanolamine-binding protein VSVS12_03370 PF13443 Cro/C1-type HTH DNA-binding domain VSVS12_03374 PF03313 Serine dehydratase alpha chain VSVS12_03375 PF03707 Bacterial signalling protein N terminal repeat VSVS12_03375 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_03375 PF00563 EAL domain VSVS12_03378 PF07660 Secretin and TonB N terminus short domain VSVS12_03378 PF00593 TonB dependent receptor VSVS12_03378 PF07715 TonB-dependent Receptor Plug Domain VSVS12_03379 PF12833 Helix-turn-helix domain VSVS12_03379 PF01497 Periplasmic binding protein VSVS12_03380 PF00155 Aminotransferase class I and II VSVS12_03383 PF08402 TOBE domain VSVS12_03383 PF00005 ABC transporter VSVS12_03388 PF00392 Bacterial regulatory proteins, gntR family VSVS12_03388 PF07702 UTRA domain VSVS12_03392 PF03466 LysR substrate binding domain VSVS12_03392 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_03395 PF02253 Phospholipase A1 VSVS12_03396 PF07690 Major Facilitator Superfamily VSVS12_03397 PF13533 Biotin-lipoyl like VSVS12_03399 PF00892 EamA-like transporter family VSVS12_03402 PF00890 FAD binding domain VSVS12_03402 PF04205 FMN-binding domain VSVS12_03406 PF12833 Helix-turn-helix domain VSVS12_03406 PF12852 Cupin VSVS12_03408 PF12848 ABC transporter VSVS12_03408 PF00005 ABC transporter VSVS12_03409 PF09905 DNA-binding protein VF530 VSVS12_03410 PF03616 Sodium/glutamate symporter VSVS12_03411 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_03411 PF07694 5TMR of 5TMR-LYT VSVS12_03417 PF13302 Acetyltransferase (GNAT) domain VSVS12_03418 PF00171 Aldehyde dehydrogenase family VSVS12_03419 PF02355 Protein export membrane protein VSVS12_03419 PF07549 SecD/SecF GG Motif VSVS12_03420 PF13721 SecD export protein N-terminal TM region VSVS12_03420 PF02355 Protein export membrane protein VSVS12_03420 PF07549 SecD/SecF GG Motif VSVS12_03424 PF16657 Maltogenic Amylase, C-terminal domain VSVS12_03424 PF00128 Alpha amylase, catalytic domain VSVS12_03429 PF01965 DJ-1/PfpI family VSVS12_03436 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_03437 PF00128 Alpha amylase, catalytic domain VSVS12_03437 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VSVS12_03440 PF01547 Bacterial extracellular solute-binding protein VSVS12_03441 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_03441 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_03441 PF08521 Two-component sensor kinase N-terminal VSVS12_03442 PF00072 Response regulator receiver domain VSVS12_03442 PF00486 Transcriptional regulatory protein, C terminal VSVS12_03444 PF00376 MerR family regulatory protein VSVS12_03444 PF09278 MerR, DNA binding VSVS12_03446 PF01734 Patatin-like phospholipase VSVS12_03448 PF12848 ABC transporter VSVS12_03448 PF16326 ABC transporter C-terminal domain VSVS12_03448 PF00005 ABC transporter VSVS12_03452 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_03453 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_03453 PF07694 5TMR of 5TMR-LYT VSVS12_03454 PF00072 Response regulator receiver domain VSVS12_03454 PF00486 Transcriptional regulatory protein, C terminal VSVS12_03455 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_03455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_03455 PF00672 HAMP domain VSVS12_03456 PF06123 Inner membrane protein CreD VSVS12_03458 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS12_03458 PF18113 Rubredoxin binding C-terminal domain VSVS12_03459 PF00753 Metallo-beta-lactamase superfamily VSVS12_03459 PF00301 Rubredoxin VSVS12_03459 PF00258 Flavodoxin VSVS12_03460 PF01590 GAF domain VSVS12_03460 PF00158 Sigma-54 interaction domain VSVS12_03468 PF00860 Permease family VSVS12_03469 PF01979 Amidohydrolase family VSVS12_03472 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus VSVS12_03472 PF08666 SAF domain VSVS12_03474 PF13378 Enolase C-terminal domain-like VSVS12_03474 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain VSVS12_03475 PF01258 Prokaryotic dksA/traR C4-type zinc finger VSVS12_03476 PF01595 Cyclin M transmembrane N-terminal domain VSVS12_03476 PF00571 CBS domain VSVS12_03476 PF03471 Transporter associated domain VSVS12_03477 PF03471 Transporter associated domain VSVS12_03477 PF00571 CBS domain VSVS12_03477 PF01595 Cyclin M transmembrane N-terminal domain VSVS12_03479 PF12833 Helix-turn-helix domain VSVS12_03479 PF02311 AraC-like ligand binding domain VSVS12_03480 PF07690 Major Facilitator Superfamily VSVS12_03482 PF03466 LysR substrate binding domain VSVS12_03482 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_03486 PF00924 Mechanosensitive ion channel VSVS12_03490 PF00563 EAL domain VSVS12_03490 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_03490 PF03707 Bacterial signalling protein N terminal repeat VSVS12_03493 PF08447 PAS fold VSVS12_03493 PF08448 PAS fold VSVS12_03493 PF13426 PAS domain VSVS12_03493 PF05231 MASE1 VSVS12_03493 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_03493 PF00563 EAL domain VSVS12_03495 PF00563 EAL domain VSVS12_03495 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_03495 PF03707 Bacterial signalling protein N terminal repeat VSVS12_03496 PF01610 Transposase VSVS12_03496 PF13542 Helix-turn-helix domain of transposase family ISL3 VSVS12_03496 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 VSVS12_03500 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VSVS12_03506 PF05025 RbsD / FucU transport protein family VSVS12_03507 PF00294 pfkB family carbohydrate kinase VSVS12_03508 PF07690 Major Facilitator Superfamily VSVS12_03510 PF00294 pfkB family carbohydrate kinase VSVS12_03511 PF00356 Bacterial regulatory proteins, lacI family VSVS12_03515 PF00271 Helicase conserved C-terminal domain VSVS12_03515 PF03880 DbpA RNA binding domain VSVS12_03515 PF00270 DEAD/DEAH box helicase VSVS12_03517 PF00773 RNB domain VSVS12_03517 PF08206 Ribonuclease B OB domain VSVS12_03517 PF00575 S1 RNA binding domain VSVS12_03521 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VSVS12_03521 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VSVS12_03522 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VSVS12_03522 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_03522 PF00672 HAMP domain VSVS12_03522 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_03522 PF01627 Hpt domain VSVS12_03522 PF00072 Response regulator receiver domain VSVS12_03523 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VSVS12_03524 PF07969 Amidohydrolase family VSVS12_03525 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin VSVS12_03526 PF00127 Copper binding proteins, plastocyanin/azurin family VSVS12_03528 PF03473 MOSC domain VSVS12_03528 PF00111 2Fe-2S iron-sulfur cluster binding domain VSVS12_03528 PF03476 MOSC N-terminal beta barrel domain VSVS12_03528 PF00111 2Fe-2S iron-sulfur cluster binding domain VSVS12_03528 PF03476 MOSC N-terminal beta barrel domain VSVS12_03528 PF03473 MOSC domain VSVS12_03529 PF00892 EamA-like transporter family VSVS12_03531 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_03531 PF00672 HAMP domain VSVS12_03534 PF00128 Alpha amylase, catalytic domain VSVS12_03542 PF03853 YjeF-related protein N-terminus VSVS12_03542 PF01256 Carbohydrate kinase VSVS12_03543 PF00478 IMP dehydrogenase / GMP reductase domain VSVS12_03544 PF17203 Single cache domain 3 VSVS12_03544 PF00989 PAS fold VSVS12_03544 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_03544 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VSVS12_03545 PF12431 Transcriptional regulator VSVS12_03545 PF00072 Response regulator receiver domain VSVS12_03546 PF01970 Tripartite tricarboxylate transporter TctA family VSVS12_03552 PF00939 Sodium:sulfate symporter transmembrane region VSVS12_03555 PF02028 BCCT, betaine/carnitine/choline family transporter VSVS12_03556 PF00072 Response regulator receiver domain VSVS12_03556 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_03556 PF00672 HAMP domain VSVS12_03556 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VSVS12_03556 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_03556 PF01627 Hpt domain VSVS12_03559 PF00664 ABC transporter transmembrane region VSVS12_03559 PF00005 ABC transporter VSVS12_03560 PF00529 HlyD membrane-fusion protein of T1SS VSVS12_03560 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VSVS12_03564 PF00072 Response regulator receiver domain VSVS12_03564 PF00486 Transcriptional regulatory protein, C terminal VSVS12_03565 PF01740 STAS domain VSVS12_03566 PF00483 Nucleotidyl transferase VSVS12_03568 PF07238 PilZ domain VSVS12_03568 PF03552 Cellulose synthase VSVS12_03568 PF00535 Glycosyl transferase family 2 VSVS12_03573 PF00722 Glycosyl hydrolases family 16 VSVS12_03578 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_03578 PF03466 LysR substrate binding domain VSVS12_03579 PF05175 Methyltransferase small domain VSVS12_03580 PF00501 AMP-binding enzyme VSVS12_03580 PF13193 AMP-binding enzyme C-terminal domain VSVS12_03581 PF00351 Biopterin-dependent aromatic amino acid hydroxylase VSVS12_03582 PF01329 Pterin 4 alpha carbinolamine dehydratase VSVS12_03584 PF13419 Haloacid dehalogenase-like hydrolase VSVS12_03585 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VSVS12_03585 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS12_03585 PF18267 Rubredoxin NAD+ reductase C-terminal domain VSVS12_03585 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VSVS12_03585 PF04324 BFD-like [2Fe-2S] binding domain VSVS12_03586 PF13806 Rieske-like [2Fe-2S] domain VSVS12_03588 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VSVS12_03588 PF14824 Sirohaem biosynthesis protein central VSVS12_03588 PF10414 Sirohaem synthase dimerisation region VSVS12_03589 PF01966 HD domain VSVS12_03595 PF03315 Serine dehydratase beta chain VSVS12_03595 PF03313 Serine dehydratase alpha chain VSVS12_03598 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_03599 PF01584 CheW-like domain VSVS12_03599 PF00072 Response regulator receiver domain VSVS12_03601 PF03279 Bacterial lipid A biosynthesis acyltransferase VSVS12_03602 PF00034 Cytochrome c VSVS12_03603 PF01212 Beta-eliminating lyase VSVS12_03605 PF07728 AAA domain (dynein-related subfamily) VSVS12_03605 PF12592 Protein of unknown function (DUF3763) VSVS12_03605 PF17868 AAA lid domain VSVS12_03606 PF05762 VWA domain containing CoxE-like protein VSVS12_03609 PF04237 YjbR VSVS12_03615 PF03590 Aspartate-ammonia ligase VSVS12_03616 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_03616 PF17200 Single Cache domain 2 VSVS12_03616 PF00672 HAMP domain VSVS12_03621 PF11756 Nitrous oxide-stimulated promoter VSVS12_03622 PF07690 Major Facilitator Superfamily VSVS12_03623 PF00085 Thioredoxin VSVS12_03624 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VSVS12_03624 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VSVS12_03625 PF12320 Type 5 capsule protein repressor C-terminal domain VSVS12_03625 PF00149 Calcineurin-like phosphoesterase VSVS12_03626 PF13476 AAA domain VSVS12_03627 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_03627 PF00072 Response regulator receiver domain VSVS12_03629 PF00654 Voltage gated chloride channel VSVS12_03630 PF07683 Cobalamin synthesis protein cobW C-terminal domain VSVS12_03630 PF02492 CobW/HypB/UreG, nucleotide-binding domain VSVS12_03631 PF01926 50S ribosome-binding GTPase VSVS12_03632 PF13183 4Fe-4S dicluster domain VSVS12_03632 PF02754 Cysteine-rich domain VSVS12_03633 PF00890 FAD binding domain VSVS12_03634 PF01266 FAD dependent oxidoreductase VSVS12_03634 PF04324 BFD-like [2Fe-2S] binding domain VSVS12_03636 PF03009 Glycerophosphoryl diester phosphodiesterase family VSVS12_03637 PF00455 DeoR C terminal sensor domain VSVS12_03637 PF08220 DeoR-like helix-turn-helix domain VSVS12_03638 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VSVS12_03638 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VSVS12_03639 PF00230 Major intrinsic protein VSVS12_03640 PF03605 Anaerobic c4-dicarboxylate membrane transporter VSVS12_03641 PF01292 Prokaryotic cytochrome b561 VSVS12_03651 PF03466 LysR substrate binding domain VSVS12_03651 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_03653 PF00155 Aminotransferase class I and II VSVS12_03654 PF00107 Zinc-binding dehydrogenase VSVS12_03654 PF08240 Alcohol dehydrogenase GroES-like domain VSVS12_03661 PF13193 AMP-binding enzyme C-terminal domain VSVS12_03661 PF00501 AMP-binding enzyme VSVS12_03665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_03665 PF00672 HAMP domain VSVS12_03665 PF02743 Cache domain VSVS12_03666 PF07662 Na+ dependent nucleoside transporter C-terminus VSVS12_03666 PF07670 Nucleoside recognition VSVS12_03666 PF01773 Na+ dependent nucleoside transporter N-terminus VSVS12_03671 PF02378 Phosphotransferase system, EIIC VSVS12_03672 PF01758 Sodium Bile acid symporter family VSVS12_03678 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain VSVS12_03678 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VSVS12_03679 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VSVS12_03680 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain VSVS12_03680 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain VSVS12_03683 PF01625 Peptide methionine sulfoxide reductase VSVS12_03683 PF01641 SelR domain VSVS12_03684 PF01268 Formate--tetrahydrofolate ligase VSVS12_03685 PF02887 Pyruvate kinase, alpha/beta domain VSVS12_03685 PF00224 Pyruvate kinase, barrel domain VSVS12_03686 PF07690 Major Facilitator Superfamily VSVS12_03688 PF02743 Cache domain VSVS12_03688 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_03688 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_03689 PF02954 Bacterial regulatory protein, Fis family VSVS12_03689 PF00072 Response regulator receiver domain VSVS12_03689 PF14532 Sigma-54 interaction domain VSVS12_03692 PF07690 Major Facilitator Superfamily VSVS12_03694 PF01497 Periplasmic binding protein VSVS12_03695 PF00593 TonB dependent receptor VSVS12_03695 PF07715 TonB-dependent Receptor Plug Domain VSVS12_03696 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_03696 PF00672 HAMP domain VSVS12_03696 PF16750 Sensor domain of 2-component histidine kinase VSVS12_03696 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_03697 PF00486 Transcriptional regulatory protein, C terminal VSVS12_03697 PF00072 Response regulator receiver domain VSVS12_03698 PF04076 Bacterial OB fold (BOF) protein VSVS12_03702 PF07694 5TMR of 5TMR-LYT VSVS12_03702 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_03706 PF12167 Arm DNA-binding domain VSVS12_03706 PF00589 Phage integrase family VSVS12_03710 PF01554 MatE VSVS12_03711 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VSVS12_03711 PF00005 ABC transporter VSVS12_03712 PF00005 ABC transporter VSVS12_03712 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VSVS12_03713 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VSVS12_03714 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_03718 PF07148 Maltose operon periplasmic protein precursor (MalM) VSVS12_03719 PF02264 LamB porin VSVS12_03720 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_03721 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_03721 PF14785 Maltose transport system permease protein MalF P2 domain VSVS12_03722 PF01547 Bacterial extracellular solute-binding protein VSVS12_03723 PF08402 TOBE domain VSVS12_03723 PF00005 ABC transporter VSVS12_03724 PF03707 Bacterial signalling protein N terminal repeat VSVS12_03724 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_03724 PF00563 EAL domain VSVS12_03725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_03725 PF00672 HAMP domain VSVS12_03725 PF12729 Four helix bundle sensory module for signal transduction VSVS12_03726 PF00128 Alpha amylase, catalytic domain VSVS12_03727 PF02446 4-alpha-glucanotransferase VSVS12_03728 PF00343 Carbohydrate phosphorylase VSVS12_03729 PF00196 Bacterial regulatory proteins, luxR family VSVS12_03729 PF17874 MalT-like TPR region VSVS12_03734 PF13808 DDE_Tnp_1-associated VSVS12_03734 PF01609 Transposase DDE domain VSVS12_03748 PF03109 ABC1 family VSVS12_03749 PF13358 DDE superfamily endonuclease VSVS12_03751 PF00893 Small Multidrug Resistance protein VSVS12_03752 PF11658 Cellulose biosynthesis protein BcsG VSVS12_03755 PF06564 Cellulose biosynthesis protein BcsQ VSVS12_03756 PF07238 PilZ domain VSVS12_03756 PF03552 Cellulose synthase VSVS12_03756 PF00535 Glycosyl transferase family 2 VSVS12_03757 PF03170 Bacterial cellulose synthase subunit VSVS12_03758 PF01270 Glycosyl hydrolases family 8 VSVS12_03759 PF01270 Glycosyl hydrolases family 8 VSVS12_03760 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) VSVS12_03762 PF00672 HAMP domain VSVS12_03762 PF12729 Four helix bundle sensory module for signal transduction VSVS12_03762 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_03763 PF13419 Haloacid dehalogenase-like hydrolase VSVS12_03764 PF00294 pfkB family carbohydrate kinase VSVS12_03767 PF11849 Domain of unknown function (DUF3369) VSVS12_03768 PF13419 Haloacid dehalogenase-like hydrolase VSVS12_03772 PF00226 DnaJ domain VSVS12_03772 PF01556 DnaJ C terminal domain VSVS12_03772 PF00684 DnaJ central domain VSVS12_03774 PF00563 EAL domain VSVS12_03774 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_03774 PF03707 Bacterial signalling protein N terminal repeat VSVS12_03774 PF13188 PAS domain VSVS12_03775 PF12241 Trans-2-enoyl-CoA reductase catalytic region VSVS12_03775 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VSVS12_03775 PF07055 Enoyl reductase FAD binding domain VSVS12_03776 PF13472 GDSL-like Lipase/Acylhydrolase family VSVS12_03777 PF00005 ABC transporter VSVS12_03780 PF02626 Carboxyltransferase domain, subdomain A and B VSVS12_03781 PF02682 Carboxyltransferase domain, subdomain C and D VSVS12_03782 PF03746 LamB/YcsF family VSVS12_03783 PF16363 GDP-mannose 4,6 dehydratase VSVS12_03785 PF05016 ParE toxin of type II toxin-antitoxin system, parDE VSVS12_03787 PF16363 GDP-mannose 4,6 dehydratase VSVS12_03788 PF02779 Transketolase, pyrimidine binding domain VSVS12_03788 PF02780 Transketolase, C-terminal domain VSVS12_03788 PF00456 Transketolase, thiamine diphosphate binding domain VSVS12_03789 PF00923 Transaldolase/Fructose-6-phosphate aldolase VSVS12_03791 PF08329 Chitinase A, N-terminal domain VSVS12_03791 PF00704 Glycosyl hydrolases family 18 VSVS12_03792 PF00581 Rhodanese-like domain VSVS12_03794 PF00899 ThiF family VSVS12_03795 PF03454 MoeA C-terminal region (domain IV) VSVS12_03795 PF03453 MoeA N-terminal region (domain I and II) VSVS12_03795 PF00994 Probable molybdopterin binding domain VSVS12_03796 PF01227 GTP cyclohydrolase I VSVS12_03797 PF00271 Helicase conserved C-terminal domain VSVS12_03797 PF00270 DEAD/DEAH box helicase VSVS12_03797 PF03880 DbpA RNA binding domain VSVS12_03798 PF09330 D-lactate dehydrogenase, membrane binding VSVS12_03798 PF01565 FAD binding domain VSVS12_03802 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VSVS12_03803 PF00873 AcrB/AcrD/AcrF family VSVS12_03804 PF01554 MatE VSVS12_03807 PF07690 Major Facilitator Superfamily VSVS12_03808 PF01047 MarR family VSVS12_03809 PF02028 BCCT, betaine/carnitine/choline family transporter VSVS12_03810 PF02811 PHP domain VSVS12_03810 PF14579 Helix-hairpin-helix motif VSVS12_03810 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VSVS12_03810 PF07733 Bacterial DNA polymerase III alpha NTPase domain VSVS12_03810 PF00929 Exonuclease VSVS12_03812 PF03222 Tryptophan/tyrosine permease family VSVS12_03814 PF04336 Acyl carrier protein phosphodiesterase VSVS12_03815 PF00270 DEAD/DEAH box helicase VSVS12_03815 PF00271 Helicase conserved C-terminal domain VSVS12_03818 PF08361 MAATS-type transcriptional repressor, C-terminal region VSVS12_03818 PF00440 Bacterial regulatory proteins, tetR family VSVS12_03819 PF00106 short chain dehydrogenase VSVS12_03820 PF00108 Thiolase, N-terminal domain VSVS12_03820 PF02803 Thiolase, C-terminal domain VSVS12_03822 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus VSVS12_03822 PF00561 alpha/beta hydrolase fold VSVS12_03823 PF08212 Lipocalin-like domain VSVS12_03825 PF04143 Sulphur transport VSVS12_03829 PF03477 ATP cone domain VSVS12_03829 PF13597 Anaerobic ribonucleoside-triphosphate reductase VSVS12_03832 PF00155 Aminotransferase class I and II VSVS12_03833 PF18030 RimK PreATP-grasp domain VSVS12_03833 PF08443 RimK-like ATP-grasp domain VSVS12_03834 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VSVS12_03834 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VSVS12_03836 PF05736 OprF membrane domain VSVS12_03836 PF00691 OmpA family VSVS12_03837 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VSVS12_03837 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VSVS12_03839 PF04363 Protein of unknown function (DUF496) VSVS12_03842 PF01541 GIY-YIG catalytic domain VSVS12_03843 PF13407 Periplasmic binding protein domain VSVS12_03844 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_03844 PF00072 Response regulator receiver domain VSVS12_03844 PF09308 LuxQ, periplasmic VSVS12_03844 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_03846 PF01266 FAD dependent oxidoreductase VSVS12_03846 PF16901 C-terminal domain of alpha-glycerophosphate oxidase VSVS12_03848 PF12805 FUSC-like inner membrane protein yccS VSVS12_03849 PF13361 UvrD-like helicase C-terminal domain VSVS12_03849 PF00580 UvrD/REP helicase N-terminal domain VSVS12_03849 PF12462 DNA helicase IV / RNA helicase N terminal VSVS12_03850 PF02142 MGS-like domain VSVS12_03851 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VSVS12_03852 PF00672 HAMP domain VSVS12_03852 PF01627 Hpt domain VSVS12_03852 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_03852 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_03852 PF00072 Response regulator receiver domain VSVS12_03855 PF00465 Iron-containing alcohol dehydrogenase VSVS12_03856 PF00483 Nucleotidyl transferase VSVS12_03857 PF02378 Phosphotransferase system, EIIC VSVS12_03857 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VSVS12_03858 PF00294 pfkB family carbohydrate kinase VSVS12_03859 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VSVS12_03859 PF00381 PTS HPr component phosphorylation site VSVS12_03860 PF00356 Bacterial regulatory proteins, lacI family VSVS12_03860 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VSVS12_03861 PF02743 Cache domain VSVS12_03861 PF00672 HAMP domain VSVS12_03861 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_03864 PF07685 CobB/CobQ-like glutamine amidotransferase domain VSVS12_03864 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VSVS12_03866 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_03867 PF00005 ABC transporter VSVS12_03867 PF03459 TOBE domain VSVS12_03869 PF01590 GAF domain VSVS12_03869 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_03869 PF00360 Phytochrome region VSVS12_03869 PF00563 EAL domain VSVS12_03871 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_03874 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VSVS12_03874 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch VSVS12_03874 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VSVS12_03875 PF02233 NAD(P) transhydrogenase beta subunit VSVS12_03877 PF00486 Transcriptional regulatory protein, C terminal VSVS12_03877 PF00072 Response regulator receiver domain VSVS12_03880 PF03701 Uncharacterised protein family (UPF0181) VSVS12_03902 PF01253 Translation initiation factor SUI1 VSVS12_03905 PF01820 D-ala D-ala ligase N-terminus VSVS12_03905 PF07478 D-ala D-ala ligase C-terminus VSVS12_03906 PF05036 Sporulation related domain VSVS12_03907 PF00583 Acetyltransferase (GNAT) family VSVS12_03907 PF13380 CoA binding domain VSVS12_03907 PF13607 Succinyl-CoA ligase like flavodoxin domain VSVS12_03908 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_03908 PF03466 LysR substrate binding domain VSVS12_03910 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VSVS12_03910 PF12793 Sugar transport-related sRNA regulator N-term VSVS12_03912 PF03061 Thioesterase superfamily VSVS12_03914 PF17820 PDZ domain VSVS12_03914 PF02163 Peptidase family M50 VSVS12_03915 PF08274 PhnA Zinc-Ribbon VSVS12_03915 PF03831 PhnA domain VSVS12_03916 PF00672 HAMP domain VSVS12_03916 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_03918 PF03741 Integral membrane protein TerC family VSVS12_03920 PF02872 5'-nucleotidase, C-terminal domain VSVS12_03920 PF00149 Calcineurin-like phosphoesterase VSVS12_03921 PF11398 Protein of unknown function (DUF2813) VSVS12_03922 PF06496 Protein of unknown function (DUF1097) VSVS12_03923 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_03923 PF03466 LysR substrate binding domain VSVS12_03924 PF01226 Formate/nitrite transporter VSVS12_03925 PF04264 YceI-like domain VSVS12_03926 PF01292 Prokaryotic cytochrome b561 VSVS12_03930 PF00563 EAL domain VSVS12_03931 PF03606 C4-dicarboxylate anaerobic carrier VSVS12_03932 PF00196 Bacterial regulatory proteins, luxR family VSVS12_03932 PF00072 Response regulator receiver domain VSVS12_03933 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term VSVS12_03933 PF00672 HAMP domain VSVS12_03933 PF07730 Histidine kinase VSVS12_03933 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_03934 PF13187 4Fe-4S dicluster domain VSVS12_03934 PF12800 4Fe-4S binding domain VSVS12_03934 PF00037 4Fe-4S binding domain VSVS12_03936 PF00384 Molybdopterin oxidoreductase VSVS12_03936 PF01568 Molydopterin dinucleotide binding domain VSVS12_03936 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VSVS12_03937 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) VSVS12_03938 PF03264 NapC/NirT cytochrome c family, N-terminal region VSVS12_03941 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VSVS12_03941 PF00072 Response regulator receiver domain VSVS12_03941 PF01627 Hpt domain VSVS12_03941 PF00672 HAMP domain VSVS12_03941 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_03941 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_03942 PF00072 Response regulator receiver domain VSVS12_03942 PF00486 Transcriptional regulatory protein, C terminal VSVS12_03950 PF00884 Sulfatase VSVS12_03951 PF03466 LysR substrate binding domain VSVS12_03951 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_03952 PF13186 Iron-sulfur cluster-binding domain VSVS12_03952 PF04055 Radical SAM superfamily VSVS12_03956 PF00563 EAL domain VSVS12_03956 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_03956 PF08447 PAS fold VSVS12_03956 PF08448 PAS fold VSVS12_03958 PF16200 C-terminal region of band_7 VSVS12_03958 PF01145 SPFH domain / Band 7 family VSVS12_03960 PF03606 C4-dicarboxylate anaerobic carrier VSVS12_03962 PF00271 Helicase conserved C-terminal domain VSVS12_03962 PF00270 DEAD/DEAH box helicase VSVS12_03966 PF05525 Branched-chain amino acid transport protein VSVS12_03968 PF02151 UvrB/uvrC motif VSVS12_03968 PF12344 Ultra-violet resistance protein B VSVS12_03968 PF17757 UvrB interaction domain VSVS12_03968 PF04851 Type III restriction enzyme, res subunit VSVS12_03968 PF00271 Helicase conserved C-terminal domain VSVS12_03971 PF09382 RQC domain VSVS12_03971 PF16124 RecQ zinc-binding VSVS12_03971 PF00570 HRDC domain VSVS12_03971 PF00271 Helicase conserved C-terminal domain VSVS12_03971 PF00270 DEAD/DEAH box helicase VSVS12_03972 PF00141 Peroxidase VSVS12_03973 PF00871 Acetokinase family VSVS12_03974 PF07715 TonB-dependent Receptor Plug Domain VSVS12_03974 PF00593 TonB dependent receptor VSVS12_03975 PF12833 Helix-turn-helix domain VSVS12_03976 PF13411 MerR HTH family regulatory protein VSVS12_03977 PF00005 ABC transporter VSVS12_03978 PF01032 FecCD transport family VSVS12_03979 PF01032 FecCD transport family VSVS12_03982 PF00563 EAL domain VSVS12_03982 PF03707 Bacterial signalling protein N terminal repeat VSVS12_03982 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_03983 PF00005 ABC transporter VSVS12_03983 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VSVS12_03984 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_03984 PF12911 N-terminal TM domain of oligopeptide transport permease C VSVS12_03985 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_03986 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VSVS12_03987 PF00133 tRNA synthetases class I (I, L, M and V) VSVS12_03987 PF08264 Anticodon-binding domain of tRNA VSVS12_03988 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VSVS12_03988 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VSVS12_03989 PF13654 AAA domain VSVS12_03989 PF05362 Lon protease (S16) C-terminal proteolytic domain VSVS12_03991 PF03466 LysR substrate binding domain VSVS12_03991 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_03995 PF07517 SecA DEAD-like domain VSVS12_03995 PF07516 SecA Wing and Scaffold domain VSVS12_03995 PF01043 SecA preprotein cross-linking domain VSVS12_03995 PF02810 SEC-C motif VSVS12_03996 PF01966 HD domain VSVS12_04000 PF01925 Sulfite exporter TauE/SafE VSVS12_04004 PF01717 Cobalamin-independent synthase, Catalytic domain VSVS12_04004 PF08267 Cobalamin-independent synthase, N-terminal domain VSVS12_04021 PF00589 Phage integrase family VSVS12_04021 PF13356 Arm DNA-binding domain VSVS12_04024 PF13086 AAA domain VSVS12_04024 PF13087 AAA domain VSVS12_04024 PF13195 Protein of unknown function (DUF4011) VSVS12_04024 PF13195 Protein of unknown function (DUF4011) VSVS12_04024 PF13086 AAA domain VSVS12_04024 PF13087 AAA domain VSVS12_04041 PF13673 Acetyltransferase (GNAT) domain VSVS12_04079 PF03691 Uncharacterised protein family (UPF0167) VSVS12_04088 PF00132 Bacterial transferase hexapeptide (six repeats) VSVS12_04098 PF00356 Bacterial regulatory proteins, lacI family VSVS12_04099 PF02378 Phosphotransferase system, EIIC VSVS12_04099 PF00367 phosphotransferase system, EIIB VSVS12_04100 PF00294 pfkB family carbohydrate kinase VSVS12_04101 PF00251 Glycosyl hydrolases family 32 N-terminal domain VSVS12_04101 PF08244 Glycosyl hydrolases family 32 C terminal VSVS12_04110 PF11975 Family 4 glycosyl hydrolase C-terminal domain VSVS12_04110 PF02056 Family 4 glycosyl hydrolase VSVS12_04111 PF12833 Helix-turn-helix domain VSVS12_04112 PF01548 Transposase VSVS12_04112 PF02371 Transposase IS116/IS110/IS902 family VSVS12_04113 PF13737 Transposase DDE domain VSVS12_04114 PF13700 Domain of unknown function (DUF4158) VSVS12_04114 PF01526 Tn3 transposase DDE domain VSVS12_04116 PF00251 Glycosyl hydrolases family 32 N-terminal domain VSVS12_04116 PF08244 Glycosyl hydrolases family 32 C terminal VSVS12_04117 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VSVS12_04117 PF00005 ABC transporter VSVS12_04119 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_04120 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VSVS12_04126 PF02397 Bacterial sugar transferase VSVS12_04127 PF00005 ABC transporter VSVS12_04128 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_04129 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_04130 PF12849 PBP superfamily domain VSVS12_04132 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VSVS12_04132 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VSVS12_04133 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VSVS12_04135 PF12833 Helix-turn-helix domain VSVS12_04136 PF01238 Phosphomannose isomerase type I VSVS12_04137 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VSVS12_04137 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VSVS12_04139 PF12833 Helix-turn-helix domain VSVS12_04139 PF06445 GyrI-like small molecule binding domain VSVS12_04145 PF01266 FAD dependent oxidoreductase VSVS12_04147 PF07726 ATPase family associated with various cellular activities (AAA) VSVS12_04147 PF17863 AAA lid domain VSVS12_04148 PF01882 Protein of unknown function DUF58 VSVS12_04150 PF07584 Aerotolerance regulator N-terminal VSVS12_04150 PF00092 von Willebrand factor type A domain VSVS12_04151 PF13519 von Willebrand factor type A domain VSVS12_04154 PF17158 Membrane-associated sensor, integral membrane domain VSVS12_04154 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_04156 PF02566 OsmC-like protein VSVS12_04157 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VSVS12_04159 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_04159 PF03466 LysR substrate binding domain VSVS12_04161 PF13520 Amino acid permease VSVS12_04164 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VSVS12_04164 PF00529 HlyD membrane-fusion protein of T1SS VSVS12_04166 PF00171 Aldehyde dehydrogenase family VSVS12_04167 PF00892 EamA-like transporter family VSVS12_04168 PF00069 Protein kinase domain VSVS12_04168 PF03793 PASTA domain VSVS12_04171 PF07715 TonB-dependent Receptor Plug Domain VSVS12_04171 PF00593 TonB dependent receptor VSVS12_04173 PF01032 FecCD transport family VSVS12_04174 PF01497 Periplasmic binding protein VSVS12_04175 PF00005 ABC transporter VSVS12_04178 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_04178 PF03466 LysR substrate binding domain VSVS12_04179 PF13533 Biotin-lipoyl like VSVS12_04182 PF00356 Bacterial regulatory proteins, lacI family VSVS12_04183 PF08244 Glycosyl hydrolases family 32 C terminal VSVS12_04183 PF00251 Glycosyl hydrolases family 32 N-terminal domain VSVS12_04199 PF00589 Phage integrase family VSVS12_04199 PF13356 Arm DNA-binding domain VSVS12_04207 PF12833 Helix-turn-helix domain VSVS12_04212 PF01575 MaoC like domain VSVS12_04213 PF12849 PBP superfamily domain VSVS12_04215 PF13977 BetI-type transcriptional repressor, C-terminal VSVS12_04215 PF00440 Bacterial regulatory proteins, tetR family VSVS12_04217 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_04217 PF03707 Bacterial signalling protein N terminal repeat VSVS12_04217 PF00563 EAL domain VSVS12_04218 PF00248 Aldo/keto reductase family VSVS12_04219 PF00793 DAHP synthetase I family VSVS12_04221 PF01040 UbiA prenyltransferase family VSVS12_04222 PF02628 Cytochrome oxidase assembly protein VSVS12_04226 PF00510 Cytochrome c oxidase subunit III VSVS12_04227 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 VSVS12_04228 PF00115 Cytochrome C and Quinol oxidase polypeptide I VSVS12_04229 PF00116 Cytochrome C oxidase subunit II, periplasmic domain VSVS12_04229 PF02790 Cytochrome C oxidase subunit II, transmembrane domain VSVS12_04231 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VSVS12_04231 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VSVS12_04231 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VSVS12_04231 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VSVS12_04232 PF00583 Acetyltransferase (GNAT) family VSVS12_04233 PF01810 LysE type translocator VSVS12_04237 PF01557 Fumarylacetoacetate (FAA) hydrolase family VSVS12_04240 PF00392 Bacterial regulatory proteins, gntR family VSVS12_04240 PF00155 Aminotransferase class I and II VSVS12_04241 PF00313 'Cold-shock' DNA-binding domain VSVS12_04243 PF01734 Patatin-like phospholipase VSVS12_04244 PF01470 Pyroglutamyl peptidase VSVS12_04247 PF02743 Cache domain VSVS12_04247 PF00672 HAMP domain VSVS12_04247 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_04252 PF12843 Putative quorum-sensing-regulated virulence factor VSVS12_04255 PF07943 Penicillin-binding protein 5, C-terminal domain VSVS12_04255 PF00768 D-alanyl-D-alanine carboxypeptidase VSVS12_04257 PF00313 'Cold-shock' DNA-binding domain VSVS12_04260 PF00175 Oxidoreductase NAD-binding domain VSVS12_04260 PF00042 Globin VSVS12_04260 PF00970 Oxidoreductase FAD-binding domain VSVS12_04261 PF01590 GAF domain VSVS12_04261 PF00158 Sigma-54 interaction domain VSVS12_04263 PF13419 Haloacid dehalogenase-like hydrolase VSVS12_04264 PF02525 Flavodoxin-like fold VSVS12_04265 PF02254 TrkA-N domain VSVS12_04265 PF00999 Sodium/hydrogen exchanger family VSVS12_04266 PF01554 MatE VSVS12_04268 PF00892 EamA-like transporter family VSVS12_04269 PF00462 Glutaredoxin VSVS12_04270 PF13542 Helix-turn-helix domain of transposase family ISL3 VSVS12_04270 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 VSVS12_04270 PF01610 Transposase VSVS12_04272 PF07690 Major Facilitator Superfamily VSVS12_04273 PF03466 LysR substrate binding domain VSVS12_04273 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_04274 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_04274 PF08448 PAS fold VSVS12_04274 PF00563 EAL domain VSVS12_04275 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_04275 PF00563 EAL domain VSVS12_04275 PF00360 Phytochrome region VSVS12_04275 PF01590 GAF domain VSVS12_04278 PF02540 NAD synthase VSVS12_04279 PF00196 Bacterial regulatory proteins, luxR family VSVS12_04281 PF01571 Aminomethyltransferase folate-binding domain VSVS12_04281 PF08669 Glycine cleavage T-protein C-terminal barrel domain VSVS12_04283 PF01597 Glycine cleavage H-protein VSVS12_04284 PF02347 Glycine cleavage system P-protein VSVS12_04285 PF00440 Bacterial regulatory proteins, tetR family VSVS12_04286 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) VSVS12_04290 PF13495 Phage integrase, N-terminal SAM-like domain VSVS12_04290 PF00589 Phage integrase family VSVS12_04292 PF01632 Ribosomal protein L35 VSVS12_04293 PF05198 Translation initiation factor IF-3, N-terminal domain VSVS12_04293 PF00707 Translation initiation factor IF-3, C-terminal domain VSVS12_04294 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VSVS12_04294 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VSVS12_04294 PF02824 TGS domain VSVS12_04294 PF03129 Anticodon binding domain VSVS12_04295 PF12729 Four helix bundle sensory module for signal transduction VSVS12_04295 PF00672 HAMP domain VSVS12_04295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_04296 PF13609 Gram-negative porin VSVS12_04297 PF01037 Lrp/AsnC ligand binding domain VSVS12_04298 PF01810 LysE type translocator VSVS12_04300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_04300 PF03466 LysR substrate binding domain VSVS12_04301 PF08240 Alcohol dehydrogenase GroES-like domain VSVS12_04301 PF00107 Zinc-binding dehydrogenase VSVS12_04302 PF00756 Putative esterase VSVS12_04304 PF00849 RNA pseudouridylate synthase VSVS12_04305 PF14602 Hexapeptide repeat of succinyl-transferase VSVS12_04305 PF12464 Maltose acetyltransferase VSVS12_04306 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VSVS12_04306 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS12_04311 PF07969 Amidohydrolase family VSVS12_04317 PF01544 CorA-like Mg2+ transporter protein VSVS12_04318 PF02254 TrkA-N domain VSVS12_04318 PF07885 Ion channel VSVS12_04319 PF01048 Phosphorylase superfamily VSVS12_04321 PF01773 Na+ dependent nucleoside transporter N-terminus VSVS12_04321 PF07662 Na+ dependent nucleoside transporter C-terminus VSVS12_04321 PF07670 Nucleoside recognition VSVS12_04322 PF02525 Flavodoxin-like fold VSVS12_04325 PF00578 AhpC/TSA family VSVS12_04326 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_04326 PF03466 LysR substrate binding domain VSVS12_04327 PF00313 'Cold-shock' DNA-binding domain VSVS12_04328 PF01098 Cell cycle protein VSVS12_04329 PF01161 Phosphatidylethanolamine-binding protein VSVS12_04331 PF01476 LysM domain VSVS12_04331 PF01551 Peptidase family M23 VSVS12_04331 PF08525 Opacity-associated protein A N-terminal motif VSVS12_04337 PF00270 DEAD/DEAH box helicase VSVS12_04337 PF00271 Helicase conserved C-terminal domain VSVS12_04339 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VSVS12_04339 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VSVS12_04340 PF13419 Haloacid dehalogenase-like hydrolase VSVS12_04342 PF00005 ABC transporter VSVS12_04345 PF00132 Bacterial transferase hexapeptide (six repeats) VSVS12_04358 PF02028 BCCT, betaine/carnitine/choline family transporter VSVS12_04359 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 VSVS12_04360 PF17969 L,D-transpeptidase C-terminal domain VSVS12_04360 PF01476 LysM domain VSVS12_04360 PF03734 L,D-transpeptidase catalytic domain VSVS12_04361 PF03441 FAD binding domain of DNA photolyase VSVS12_04361 PF00875 DNA photolyase VSVS12_04362 PF13411 MerR HTH family regulatory protein VSVS12_04363 PF08349 Protein of unknown function (DUF1722) VSVS12_04364 PF01048 Phosphorylase superfamily VSVS12_04367 PF00990 Diguanylate cyclase, GGDEF domain VSVS12_04368 PF11742 Protein of unknown function (DUF3302) VSVS12_04369 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VSVS12_04369 PF00529 HlyD membrane-fusion protein of T1SS VSVS12_04370 PF07155 ECF-type riboflavin transporter, S component VSVS12_04371 PF12558 ATP-binding cassette cobalt transporter VSVS12_04371 PF00005 ABC transporter VSVS12_04376 PF13808 DDE_Tnp_1-associated VSVS12_04376 PF01609 Transposase DDE domain VSVS12_04377 PF01609 Transposase DDE domain VSVS12_04377 PF13808 DDE_Tnp_1-associated VSVS12_04381 PF01131 DNA topoisomerase VSVS12_04381 PF01751 Toprim domain VSVS12_04388 PF13358 DDE superfamily endonuclease VSVS12_04391 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_04392 PF00005 ABC transporter VSVS12_04392 PF08402 TOBE domain VSVS12_04393 PF03009 Glycerophosphoryl diester phosphodiesterase family VSVS12_04394 PF00480 ROK family VSVS12_04395 PF16363 GDP-mannose 4,6 dehydratase VSVS12_04396 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VSVS12_04396 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VSVS12_04401 PF10881 Protein of unknown function (DUF2726) VSVS12_04415 PF00437 Type II/IV secretion system protein VSVS12_04421 PF00089 Trypsin VSVS12_04422 PF00216 Bacterial DNA-binding protein VSVS12_04457 PF04013 Putative SAM-dependent RNA methyltransferase VSVS12_04458 PF02631 RecX family VSVS12_04461 PF04002 RadC-like JAB domain VSVS12_04465 PF00271 Helicase conserved C-terminal domain VSVS12_04465 PF17191 RecG wedge domain VSVS12_04465 PF00270 DEAD/DEAH box helicase VSVS12_04472 PF01051 Initiator Replication protein VSVS12_04485 PF04245 37-kD nucleoid-associated bacterial protein VSVS12_04488 PF06183 DinI-like family VSVS12_04490 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system VSVS12_04491 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system VSVS12_04492 PF00239 Resolvase, N terminal domain VSVS12_04492 PF02796 Helix-turn-helix domain of resolvase VSVS12_04494 PF00872 Transposase, Mutator family VSVS12_04496 PF01695 IstB-like ATP binding protein VSVS12_04497 PF02796 Helix-turn-helix domain of resolvase VSVS12_04497 PF00665 Integrase core domain VSVS12_04499 PF01848 Hok/gef family VSVS12_04503 PF13808 DDE_Tnp_1-associated VSVS12_04503 PF01609 Transposase DDE domain VSVS12_04507 PF01751 Toprim domain VSVS12_04507 PF01131 DNA topoisomerase VSVS12_04514 PF13358 DDE superfamily endonuclease VSVS12_04517 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_04518 PF08402 TOBE domain VSVS12_04518 PF00005 ABC transporter VSVS12_04519 PF03009 Glycerophosphoryl diester phosphodiesterase family VSVS12_04520 PF00480 ROK family VSVS12_04521 PF16363 GDP-mannose 4,6 dehydratase VSVS12_04522 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VSVS12_04522 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VSVS12_04530 PF03553 Na+/H+ antiporter family VSVS12_04531 PF03553 Na+/H+ antiporter family VSVS12_04532 PF00578 AhpC/TSA family VSVS12_04533 PF02195 ParB-like nuclease domain VSVS12_04533 PF08775 ParB family VSVS12_04536 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VSVS12_04542 PF01212 Beta-eliminating lyase VSVS12_04544 PF01261 Xylose isomerase-like TIM barrel VSVS12_04545 PF01261 Xylose isomerase-like TIM barrel VSVS12_04546 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VSVS12_04547 PF00596 Class II Aldolase and Adducin N-terminal domain VSVS12_04548 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VSVS12_04550 PF03611 PTS system sugar-specific permease component VSVS12_04551 PF08220 DeoR-like helix-turn-helix domain VSVS12_04551 PF00455 DeoR C terminal sensor domain VSVS12_04553 PF12563 Hemolytic toxin N terminal VSVS12_04553 PF16458 Beta-prism lectin VSVS12_04553 PF07968 Leukocidin/Hemolysin toxin family VSVS12_04556 PF02796 Helix-turn-helix domain of resolvase VSVS12_04556 PF00239 Resolvase, N terminal domain VSVS12_04557 PF00239 Resolvase, N terminal domain VSVS12_04557 PF02796 Helix-turn-helix domain of resolvase VSVS12_04560 PF03466 LysR substrate binding domain VSVS12_04560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_04563 PF00578 AhpC/TSA family VSVS12_04564 PF08775 ParB family VSVS12_04564 PF02195 ParB-like nuclease domain VSVS12_04565 PF13614 AAA domain VSVS12_04570 PF01212 Beta-eliminating lyase VSVS12_04572 PF01261 Xylose isomerase-like TIM barrel VSVS12_04573 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VSVS12_04574 PF00596 Class II Aldolase and Adducin N-terminal domain VSVS12_04575 PF00596 Class II Aldolase and Adducin N-terminal domain VSVS12_04576 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VSVS12_04577 PF03611 PTS system sugar-specific permease component VSVS12_04578 PF00455 DeoR C terminal sensor domain VSVS12_04578 PF08220 DeoR-like helix-turn-helix domain VSVS12_04581 PF16458 Beta-prism lectin VSVS12_04581 PF12563 Hemolytic toxin N terminal VSVS12_04581 PF07968 Leukocidin/Hemolysin toxin family VSVS12_04584 PF02796 Helix-turn-helix domain of resolvase VSVS12_04584 PF00239 Resolvase, N terminal domain VSVS12_04595 PF02796 Helix-turn-helix domain of resolvase VSVS12_04595 PF00239 Resolvase, N terminal domain