VSVS12_00001 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VSVS12_00001 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS12_00002 PF01554 MatE VSVS12_00003 PF04072 Leucine carboxyl methyltransferase VSVS12_00004 PF00717 Peptidase S24-like VSVS12_00004 PF01726 LexA DNA binding domain VSVS12_00005 PF01219 Prokaryotic diacylglycerol kinase VSVS12_00006 PF01553 Acyltransferase VSVS12_00007 PF01040 UbiA prenyltransferase family VSVS12_00008 PF04345 Chorismate lyase VSVS12_00009 PF03748 VSVS12_00009 VSVS12_00010 PF01694 Rhomboid family VSVS12_00010 PF12122 Protein of unknown function (DUF3582) VSVS12_00011 PF00581 Rhodanese-like domain VSVS12_00012 PF00140 Sigma-70 factor, region 1 VSVS12_00012 PF04542 Sigma-70 region 2 VSVS12_00012 PF04545 Sigma-70, region 4 VSVS12_00014 PF00005 ABC transporter VSVS12_00015 PF00448 SRP54-type protein, GTPase domain VSVS12_00015 PF02881 SRP54-type protein, helical bundle domain VSVS12_00016 PF03602 Conserved hypothetical protein 95 VSVS12_00017 PF06611 VSVS12_00017 VSVS12_00018 PF01914 VSVS12_00018 VSVS12_00019 PF01609 Transposase DDE domain VSVS12_00020 PF10678 VSVS12_00020 VSVS12_00021 PF07947 VSVS12_00021 VSVS12_00023 PF10694 Protein of unknown function (DUF2500) VSVS12_00024 PF01757 VSVS12_00024 VSVS12_00025 PF07690 Major Facilitator Superfamily VSVS12_00026 PF00782 Dual specificity phosphatase, catalytic domain VSVS12_00027 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VSVS12_00027 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VSVS12_00028 PF01022 Bacterial regulatory protein, arsR family VSVS12_00029 PF00563 EAL domain VSVS12_00029 PF08668 HDOD domain VSVS12_00030 PF01810 VSVS12_00030 VSVS12_00031 PF12146 Putative lysophospholipase VSVS12_00032 PF08282 haloacid dehalogenase-like hydrolase VSVS12_00034 PF03942 VSVS12_00034 VSVS12_00035 PF13419 Haloacid dehalogenase-like hydrolase VSVS12_00036 PF00589 Phage integrase family VSVS12_00036 PF02899 Phage integrase, N-terminal SAM-like domain VSVS12_00037 PF04340 Protein of unknown function, DUF484 VSVS12_00038 PF01678 Diaminopimelate epimerase VSVS12_00039 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VSVS12_00039 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VSVS12_00040 PF01491 Frataxin-like domain VSVS12_00041 PF01295 VSVS12_00041 VSVS12_00041 PF12633 VSVS12_00041 VSVS12_00042 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain VSVS12_00042 PF03900 Porphobilinogen deaminase, C-terminal domain VSVS12_00043 PF02602 Uroporphyrinogen-III synthase HemD VSVS12_00044 PF04375 VSVS12_00044 VSVS12_00045 PF07219 VSVS12_00045 VSVS12_00046 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VSVS12_00047 PF00665 Integrase core domain VSVS12_00060 PF00175 Oxidoreductase NAD-binding domain VSVS12_00060 PF00970 Oxidoreductase FAD-binding domain VSVS12_00061 PF00111 2Fe-2S iron-sulfur cluster binding domain VSVS12_00062 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VSVS12_00064 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VSVS12_00064 PF07497 Rho termination factor, RNA-binding domain VSVS12_00064 PF07498 Rho termination factor, N-terminal domain VSVS12_00065 PF00085 Thioredoxin VSVS12_00066 PF00270 DEAD/DEAH box helicase VSVS12_00066 PF00271 Helicase conserved C-terminal domain VSVS12_00067 PF02541 Ppx/GppA phosphatase family VSVS12_00068 PF02592 VSVS12_00068 VSVS12_00069 PF12305 VSVS12_00069 VSVS12_00070 PF00270 DEAD/DEAH box helicase VSVS12_00070 PF00271 Helicase conserved C-terminal domain VSVS12_00070 PF00570 HRDC domain VSVS12_00070 PF09382 RQC domain VSVS12_00070 PF16124 VSVS12_00070 VSVS12_00071 PF00892 EamA-like transporter family VSVS12_00072 PF02311 AraC-like ligand binding domain VSVS12_00072 PF12833 Helix-turn-helix domain VSVS12_00073 PF01810 VSVS12_00073 VSVS12_00074 PF00580 UvrD/REP helicase N-terminal domain VSVS12_00074 PF13361 UvrD-like helicase C-terminal domain VSVS12_00075 PF10048 VSVS12_00075 VSVS12_00076 PF05114 Protein of unknown function (DUF692) VSVS12_00077 PF09836 Uncharacterized protein conserved in bacteria (DUF2063) VSVS12_00078 PF07681 VSVS12_00078 VSVS12_00079 PF01432 Peptidase family M3 VSVS12_00080 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ VSVS12_00081 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VSVS12_00081 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS12_00083 PF08348 VSVS12_00083 VSVS12_00083 PF13309 VSVS12_00083 VSVS12_00084 PF00375 Sodium:dicarboxylate symporter family VSVS12_00085 PF01053 Cys/Met metabolism PLP-dependent enzyme VSVS12_00086 PF01042 Endoribonuclease L-PSP VSVS12_00087 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_00087 PF00672 HAMP domain VSVS12_00088 PF00069 Protein kinase domain VSVS12_00090 PF01609 Transposase DDE domain VSVS12_00092 PF07638 ECF sigma factor VSVS12_00096 PF00884 Sulfatase VSVS12_00096 PF08019 VSVS12_00096 VSVS12_00097 PF01219 Prokaryotic diacylglycerol kinase VSVS12_00098 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_00098 PF12911 VSVS12_00098 VSVS12_00099 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_00100 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VSVS12_00101 PF00005 ABC transporter VSVS12_00101 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VSVS12_00107 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VSVS12_00108 PF00580 UvrD/REP helicase N-terminal domain VSVS12_00108 PF13361 UvrD-like helicase C-terminal domain VSVS12_00109 PF00440 Bacterial regulatory proteins, tetR family VSVS12_00109 PF16295 VSVS12_00109 VSVS12_00110 PF16576 VSVS12_00110 VSVS12_00111 PF00873 AcrB/AcrD/AcrF family VSVS12_00112 PF04380 VSVS12_00112 VSVS12_00113 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain VSVS12_00113 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain VSVS12_00114 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_00114 PF03466 LysR substrate binding domain VSVS12_00115 PF04055 Radical SAM superfamily VSVS12_00115 PF06969 HemN C-terminal domain VSVS12_00116 PF10675 VSVS12_00116 VSVS12_00117 PF04220 VSVS12_00117 VSVS12_00118 PF13489 Methyltransferase domain VSVS12_00119 PF00034 Cytochrome c VSVS12_00120 PF01926 50S ribosome-binding GTPase VSVS12_00121 PF00476 DNA polymerase family A VSVS12_00121 PF01367 5'-3' exonuclease, C-terminal SAM fold VSVS12_00121 PF01612 3'-5' exonuclease VSVS12_00121 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VSVS12_00122 PF00490 Delta-aminolevulinic acid dehydratase VSVS12_00123 PF01026 TatD related DNase VSVS12_00124 PF00902 Sec-independent protein translocase protein (TatC) VSVS12_00125 PF02416 mttA/Hcf106 family VSVS12_00126 PF02416 mttA/Hcf106 family VSVS12_00127 PF03109 VSVS12_00127 VSVS12_00128 PF02036 SCP-2 sterol transfer family VSVS12_00129 PF01209 ubiE/COQ5 methyltransferase family VSVS12_00130 PF02646 VSVS12_00130 VSVS12_00131 PF00892 EamA-like transporter family VSVS12_00132 PF01081 KDPG and KHG aldolase VSVS12_00133 PF02447 VSVS12_00133 VSVS12_00134 PF01202 Shikimate kinase VSVS12_00135 PF00920 Dehydratase family VSVS12_00136 PF00356 Bacterial regulatory proteins, lacI family VSVS12_00136 PF13377 Periplasmic binding protein-like domain VSVS12_00138 PF14350 VSVS12_00138 VSVS12_00139 PF06114 Domain of unknown function (DUF955) VSVS12_00142 PF06527 VSVS12_00142 VSVS12_00142 PF15978 VSVS12_00142 VSVS12_00143 PF13401 AAA domain VSVS12_00144 PF00665 Integrase core domain VSVS12_00144 PF09299 Mu transposase, C-terminal VSVS12_00145 PF08722 TnsA endonuclease N terminal VSVS12_00146 PF03486 HI0933-like protein VSVS12_00147 PF10625 VSVS12_00147 VSVS12_00148 PF00210 Ferritin-like domain VSVS12_00149 PF00582 Universal stress protein family VSVS12_00150 PF00892 EamA-like transporter family VSVS12_00151 PF04445 Putative SAM-dependent methyltransferase VSVS12_00152 PF00563 EAL domain VSVS12_00152 PF00990 GGDEF domain VSVS12_00152 PF13426 PAS domain VSVS12_00153 PF01037 AsnC family VSVS12_00153 PF13404 AsnC-type helix-turn-helix domain VSVS12_00155 PF07690 Major Facilitator Superfamily VSVS12_00156 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_00156 PF03466 LysR substrate binding domain VSVS12_00157 PF00557 Metallopeptidase family M24 VSVS12_00157 PF01321 Creatinase/Prolidase N-terminal domain VSVS12_00157 PF16188 VSVS12_00157 VSVS12_00157 PF16189 VSVS12_00157 VSVS12_00158 PF04055 Radical SAM superfamily VSVS12_00158 PF06968 Biotin and Thiamin Synthesis associated domain VSVS12_00159 PF05690 Thiazole biosynthesis protein ThiG VSVS12_00160 PF02597 ThiS family VSVS12_00161 PF00899 ThiF family VSVS12_00162 PF02581 Thiamine monophosphate synthase/TENI VSVS12_00163 PF01964 ThiC family VSVS12_00163 PF13667 ThiC-associated domain VSVS12_00164 PF02537 VSVS12_00164 VSVS12_00177 PF12724 Flavodoxin domain VSVS12_00178 PF02386 Cation transport protein VSVS12_00179 PF01205 Uncharacterized protein family UPF0029 VSVS12_00179 PF09186 Domain of unknown function (DUF1949) VSVS12_00180 PF00378 Enoyl-CoA hydratase/isomerase family VSVS12_00180 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VSVS12_00180 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VSVS12_00181 PF00108 Thiolase, N-terminal domain VSVS12_00181 PF02803 Thiolase, C-terminal domain VSVS12_00182 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_00182 PF03466 LysR substrate binding domain VSVS12_00183 PF07690 Major Facilitator Superfamily VSVS12_00184 PF00132 Bacterial transferase hexapeptide (six repeats) VSVS12_00184 PF12804 MobA-like NTP transferase domain VSVS12_00185 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VSVS12_00185 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VSVS12_00186 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VSVS12_00186 PF02874 ATP synthase alpha/beta family, beta-barrel domain VSVS12_00187 PF00231 ATP synthase VSVS12_00188 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VSVS12_00188 PF00306 ATP synthase alpha/beta chain, C terminal domain VSVS12_00188 PF02874 ATP synthase alpha/beta family, beta-barrel domain VSVS12_00189 PF00213 ATP synthase delta (OSCP) subunit VSVS12_00190 PF00430 ATP synthase B/B' CF(0) VSVS12_00191 PF00137 ATP synthase subunit C VSVS12_00192 PF00119 ATP synthase A chain VSVS12_00193 PF03899 VSVS12_00193 VSVS12_00194 PF02195 ParB-like nuclease domain VSVS12_00195 PF13614 AAA domain VSVS12_00196 PF02527 rRNA small subunit methyltransferase G VSVS12_00197 PF01134 Glucose inhibited division protein A VSVS12_00197 PF13932 GidA associated domain 3 VSVS12_00198 PF00258 Flavodoxin VSVS12_00199 PF01926 50S ribosome-binding GTPase VSVS12_00199 PF10396 GTP-binding protein TrmE N-terminus VSVS12_00199 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE VSVS12_00200 PF02096 60Kd inner membrane protein VSVS12_00200 PF14849 YidC periplasmic domain VSVS12_00201 PF01809 VSVS12_00201 VSVS12_00202 PF00825 Ribonuclease P VSVS12_00203 PF00468 Ribosomal protein L34 VSVS12_00204 PF00005 ABC transporter VSVS12_00205 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_00206 PF00497 Bacterial extracellular solute-binding proteins, family 3 VSVS12_00207 PF00308 Bacterial dnaA protein VSVS12_00207 PF08299 Bacterial dnaA protein helix-turn-helix VSVS12_00207 PF11638 DnaA N-terminal domain VSVS12_00208 PF00712 DNA polymerase III beta subunit, N-terminal domain VSVS12_00208 PF02767 DNA polymerase III beta subunit, central domain VSVS12_00208 PF02768 DNA polymerase III beta subunit, C-terminal domain VSVS12_00209 PF02463 RecF/RecN/SMC N terminal domain VSVS12_00210 PF00204 DNA gyrase B VSVS12_00210 PF00986 DNA gyrase B subunit, carboxyl terminus VSVS12_00210 PF01751 Toprim domain VSVS12_00210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_00211 PF00011 Hsp20/alpha crystallin family VSVS12_00212 PF00155 Aminotransferase class I and II VSVS12_00213 PF02092 VSVS12_00213 VSVS12_00213 PF05746 DALR anticodon binding domain VSVS12_00214 PF02091 Glycyl-tRNA synthetase alpha subunit VSVS12_00215 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VSVS12_00217 PF01206 Sulfurtransferase TusA VSVS12_00218 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_00218 PF03466 LysR substrate binding domain VSVS12_00219 PF00107 Zinc-binding dehydrogenase VSVS12_00219 PF08240 Alcohol dehydrogenase GroES-like domain VSVS12_00220 PF00291 Pyridoxal-phosphate dependent enzyme VSVS12_00220 PF00585 C-terminal regulatory domain of Threonine dehydratase VSVS12_00221 PF00920 Dehydratase family VSVS12_00222 PF01063 Aminotransferase class IV VSVS12_00223 PF13710 ACT domain VSVS12_00224 PF00205 Thiamine pyrophosphate enzyme, central domain VSVS12_00224 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VSVS12_00224 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VSVS12_00225 PF13541 Subunit ChlI of Mg-chelatase VSVS12_00232 PF00239 Resolvase, N terminal domain VSVS12_00232 PF07508 Recombinase VSVS12_00232 PF13408 Recombinase zinc beta ribbon domain VSVS12_00233 PF01078 Magnesium chelatase, subunit ChlI VSVS12_00233 PF13541 Subunit ChlI of Mg-chelatase VSVS12_00237 PF00589 Phage integrase family VSVS12_00241 PF01078 Magnesium chelatase, subunit ChlI VSVS12_00241 PF13335 VSVS12_00241 VSVS12_00242 PF11059 VSVS12_00242 VSVS12_00243 PF01323 DSBA-like thioredoxin domain VSVS12_00244 PF01636 Phosphotransferase enzyme family VSVS12_00245 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase VSVS12_00245 PF12801 VSVS12_00245 VSVS12_00245 PF13746 4Fe-4S dicluster domain VSVS12_00246 PF06288 Protein of unknown function (DUF1040) VSVS12_00247 PF07070 VSVS12_00247 VSVS12_00248 PF03006 VSVS12_00248 VSVS12_00249 PF02386 Cation transport protein VSVS12_00250 PF02080 TrkA-C domain VSVS12_00250 PF02254 TrkA-N domain VSVS12_00251 PF01029 NusB family VSVS12_00251 PF01189 NOL1/NOP2/sun family VSVS12_00252 PF00551 Formyl transferase VSVS12_00252 PF02911 Formyl transferase, C-terminal domain VSVS12_00253 PF01327 Polypeptide deformylase VSVS12_00255 PF02481 DNA recombination-mediator protein A VSVS12_00256 PF04361 VSVS12_00256 VSVS12_00257 PF01396 VSVS12_00257 VSVS12_00258 PF02222 ATP-grasp domain VSVS12_00260 PF00731 AIR carboxylase VSVS12_00261 PF01300 Telomere recombination VSVS12_00262 PF01218 Coproporphyrinogen III oxidase VSVS12_00263 PF01488 Shikimate / quinate 5-dehydrogenase VSVS12_00263 PF08501 Shikimate dehydrogenase substrate binding domain VSVS12_00264 PF07369 Protein of unknown function (DUF1488) VSVS12_00265 PF00132 Bacterial transferase hexapeptide (six repeats) VSVS12_00273 PF00962 Adenosine/AMP deaminase VSVS12_00274 PF00563 EAL domain VSVS12_00274 PF00990 GGDEF domain VSVS12_00274 PF02743 Cache domain VSVS12_00275 PF00072 Response regulator receiver domain VSVS12_00275 PF00158 Sigma-54 interaction domain VSVS12_00275 PF02954 Bacterial regulatory protein, Fis family VSVS12_00276 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_00276 PF00989 PAS fold VSVS12_00276 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_00277 PF00120 Glutamine synthetase, catalytic domain VSVS12_00277 PF03951 Glutamine synthetase, beta-Grasp domain VSVS12_00278 PF00009 Elongation factor Tu GTP binding domain VSVS12_00278 PF00679 Elongation factor G C-terminus VSVS12_00278 PF03144 Elongation factor Tu domain 2 VSVS12_00279 PF13521 AAA domain VSVS12_00280 PF11172 VSVS12_00280 VSVS12_00281 PF03631 VSVS12_00281 VSVS12_00282 PF02580 D-Tyr-tRNA(Tyr) deacylase VSVS12_00283 PF09500 Putative thioesterase (yiiD_Cterm) VSVS12_00283 PF13673 Acetyltransferase (GNAT) domain VSVS12_00284 PF05170 VSVS12_00284 VSVS12_00285 PF01293 Phosphoenolpyruvate carboxykinase VSVS12_00286 PF01430 Hsp33 protein VSVS12_00287 PF01479 S4 domain VSVS12_00288 PF11356 Type IV pilus biogenesis VSVS12_00289 PF00263 VSVS12_00289 VSVS12_00289 PF03958 Bacterial type II/III secretion system short domain VSVS12_00290 PF00437 Type II/IV secretion system protein VSVS12_00291 PF00482 Type II secretion system (T2SS), protein F VSVS12_00292 PF07963 Prokaryotic N-terminal methylation motif VSVS12_00292 PF08334 Type II secretion system (T2SS), protein G VSVS12_00293 PF07963 Prokaryotic N-terminal methylation motif VSVS12_00293 PF12019 Type II transport protein GspH VSVS12_00294 PF02501 Type II secretion system (T2SS), protein I VSVS12_00294 PF07963 Prokaryotic N-terminal methylation motif VSVS12_00295 PF07963 Prokaryotic N-terminal methylation motif VSVS12_00295 PF11612 Type II secretion system (T2SS), protein J VSVS12_00296 PF03934 Type II secretion system (T2SS), protein K VSVS12_00297 PF05134 Type II secretion system (T2SS), protein L VSVS12_00297 PF12693 GspL periplasmic domain VSVS12_00298 PF04612 Type II secretion system (T2SS), protein M VSVS12_00299 PF01203 VSVS12_00299 VSVS12_00300 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_00300 PF00672 HAMP domain VSVS12_00300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_00301 PF00072 Response regulator receiver domain VSVS12_00301 PF00486 Transcriptional regulatory protein, C terminal VSVS12_00302 PF01272 Transcription elongation factor, GreA/GreB, C-term VSVS12_00302 PF03449 Transcription elongation factor, N-terminal VSVS12_00303 PF02627 Carboxymuconolactone decarboxylase family VSVS12_00304 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_00304 PF03466 LysR substrate binding domain VSVS12_00305 PF00575 S1 RNA binding domain VSVS12_00305 PF09371 Tex-like protein N-terminal domain VSVS12_00305 PF12836 Helix-hairpin-helix motif VSVS12_00305 PF16921 VSVS12_00305 VSVS12_00307 PF00561 alpha/beta hydrolase fold VSVS12_00308 PF00156 Phosphoribosyl transferase domain VSVS12_00309 PF01106 NifU-like domain VSVS12_00309 PF01521 Iron-sulphur cluster biosynthesis VSVS12_00310 PF00293 NUDIX domain VSVS12_00311 PF00459 Inositol monophosphatase family VSVS12_00312 PF00728 Glycosyl hydrolase family 20, catalytic domain VSVS12_00312 PF02838 Glycosyl hydrolase family 20, domain 2 VSVS12_00312 PF03173 Putative carbohydrate binding domain VSVS12_00312 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VSVS12_00313 PF00270 DEAD/DEAH box helicase VSVS12_00313 PF00271 Helicase conserved C-terminal domain VSVS12_00313 PF17191 VSVS12_00313 VSVS12_00314 PF00588 SpoU rRNA Methylase family VSVS12_00314 PF12105 SpoU, rRNA methylase, C-terminal VSVS12_00315 PF02824 TGS domain VSVS12_00315 PF04607 Region found in RelA / SpoT proteins VSVS12_00315 PF13291 ACT domain VSVS12_00315 PF13328 HD domain VSVS12_00316 PF01192 RNA polymerase Rpb6 VSVS12_00317 PF00625 Guanylate kinase VSVS12_00319 PF00860 Permease family VSVS12_00320 PF06146 VSVS12_00320 VSVS12_00321 PF08543 Phosphomethylpyrimidine kinase VSVS12_00322 PF03755 VSVS12_00322 VSVS12_00322 PF08340 VSVS12_00322 VSVS12_00323 PF01138 3' exoribonuclease family, domain 1 VSVS12_00323 PF03725 3' exoribonuclease family, domain 2 VSVS12_00324 PF00156 Phosphoribosyl transferase domain VSVS12_00325 PF03279 VSVS12_00325 VSVS12_00326 PF00440 Bacterial regulatory proteins, tetR family VSVS12_00327 PF02441 Flavoprotein VSVS12_00327 PF04127 DNA / pantothenate metabolism flavoprotein VSVS12_00328 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_00328 PF00672 HAMP domain VSVS12_00328 PF17200 VSVS12_00328 VSVS12_00329 PF04002 RadC-like JAB domain VSVS12_00330 PF00830 Ribosomal L28 family VSVS12_00331 PF00471 Ribosomal protein L33 VSVS12_00333 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain VSVS12_00333 PF06827 Zinc finger found in FPG and IleRS VSVS12_00333 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain VSVS12_00334 PF01467 Cytidylyltransferase VSVS12_00335 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VSVS12_00336 PF00535 Glycosyl transferase family 2 VSVS12_00337 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VSVS12_00338 PF01219 Prokaryotic diacylglycerol kinase VSVS12_00339 PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family VSVS12_00340 PF00884 Sulfatase VSVS12_00340 PF11893 VSVS12_00340 VSVS12_00341 PF07922 Glycosyltransferase family 52 VSVS12_00342 PF02719 Polysaccharide biosynthesis protein VSVS12_00343 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VSVS12_00345 PF00117 Glutamine amidotransferase class-I VSVS12_00346 PF00977 Histidine biosynthesis protein VSVS12_00347 PF02348 Cytidylyltransferase VSVS12_00349 PF04101 Glycosyltransferase family 28 C-terminal domain VSVS12_00349 PF13302 Acetyltransferase (GNAT) domain VSVS12_00350 PF03102 NeuB family VSVS12_00350 PF08666 SAF domain VSVS12_00352 PF00534 Glycosyl transferases group 1 VSVS12_00352 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VSVS12_00353 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VSVS12_00354 PF03279 VSVS12_00354 VSVS12_00355 PF01370 NAD dependent epimerase/dehydratase family VSVS12_00356 PF13091 PLD-like domain VSVS12_00357 PF13673 Acetyltransferase (GNAT) domain VSVS12_00358 PF01565 FAD binding domain VSVS12_00358 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VSVS12_00359 PF02237 Biotin protein ligase C terminal domain VSVS12_00359 PF03099 Biotin/lipoate A/B protein ligase family VSVS12_00359 PF08279 HTH domain VSVS12_00360 PF11333 VSVS12_00360 VSVS12_00361 PF00166 Chaperonin 10 Kd subunit VSVS12_00362 PF00118 TCP-1/cpn60 chaperonin family VSVS12_00363 PF00990 GGDEF domain VSVS12_00364 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded VSVS12_00365 PF06005 Protein of unknown function (DUF904) VSVS12_00366 PF02219 Methylenetetrahydrofolate reductase VSVS12_00367 PF00696 Amino acid kinase family VSVS12_00367 PF00742 Homoserine dehydrogenase VSVS12_00367 PF03447 Homoserine dehydrogenase, NAD binding domain VSVS12_00368 PF01053 Cys/Met metabolism PLP-dependent enzyme VSVS12_00369 PF01340 Met Apo-repressor, MetJ VSVS12_00370 PF00390 Malic enzyme, N-terminal domain VSVS12_00370 PF03949 Malic enzyme, NAD binding domain VSVS12_00371 PF01197 Ribosomal protein L31 VSVS12_00372 PF00270 DEAD/DEAH box helicase VSVS12_00372 PF00271 Helicase conserved C-terminal domain VSVS12_00373 PF00356 Bacterial regulatory proteins, lacI family VSVS12_00373 PF13377 Periplasmic binding protein-like domain VSVS12_00374 PF05036 Sporulation related domain VSVS12_00375 PF02357 Transcription termination factor nusG VSVS12_00376 PF02350 UDP-N-acetylglucosamine 2-epimerase VSVS12_00377 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VSVS12_00377 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VSVS12_00377 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VSVS12_00378 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VSVS12_00378 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VSVS12_00378 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VSVS12_00379 PF01370 NAD dependent epimerase/dehydratase family VSVS12_00380 PF01943 VSVS12_00380 VSVS12_00384 PF14602 Hexapeptide repeat of succinyl-transferase VSVS12_00385 PF00534 Glycosyl transferases group 1 VSVS12_00386 PF01507 Phosphoadenosine phosphosulfate reductase family VSVS12_00387 PF00117 Glutamine amidotransferase class-I VSVS12_00388 PF00977 Histidine biosynthesis protein VSVS12_00389 PF00107 Zinc-binding dehydrogenase VSVS12_00389 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VSVS12_00390 PF07940 Heparinase II/III-like protein VSVS12_00390 PF16889 VSVS12_00390 VSVS12_00391 PF00534 Glycosyl transferases group 1 VSVS12_00391 PF13579 Glycosyl transferase 4-like domain VSVS12_00392 PF01370 NAD dependent epimerase/dehydratase family VSVS12_00393 PF02397 VSVS12_00393 VSVS12_00394 PF02719 Polysaccharide biosynthesis protein VSVS12_00394 PF13727 CoA-binding domain VSVS12_00395 PF16363 VSVS12_00395 VSVS12_00397 PF00589 Phage integrase family VSVS12_00397 PF12167 VSVS12_00397 VSVS12_00401 PF04607 Region found in RelA / SpoT proteins VSVS12_00403 PF13505 Outer membrane protein beta-barrel domain VSVS12_00404 PF02563 Polysaccharide biosynthesis/export protein VSVS12_00404 PF06251 Capsule biosynthesis GfcC VSVS12_00404 PF10531 SLBB domain VSVS12_00405 PF02706 Chain length determinant protein VSVS12_00405 PF13807 VSVS12_00405 VSVS12_00406 PF06082 VSVS12_00406 VSVS12_00407 PF06251 Capsule biosynthesis GfcC VSVS12_00408 PF11102 Group 4 capsule polysaccharide formation lipoprotein gfcB VSVS12_00410 PF00227 Proteasome subunit VSVS12_00411 PF00004 ATPase family associated with various cellular activities (AAA) VSVS12_00411 PF07724 AAA domain (Cdc48 subfamily) VSVS12_00411 PF10431 C-terminal, D2-small domain, of ClpB protein VSVS12_00412 PF02313 Fumarate reductase subunit D VSVS12_00413 PF02300 Fumarate reductase subunit C VSVS12_00414 PF13085 2Fe-2S iron-sulfur cluster binding domain VSVS12_00414 PF13183 4Fe-4S dicluster domain VSVS12_00415 PF00890 FAD binding domain VSVS12_00415 PF02910 Fumarate reductase flavoprotein C-term VSVS12_00417 PF00152 tRNA synthetases class II (D, K and N) VSVS12_00419 PF00581 Rhodanese-like domain VSVS12_00420 PF02556 Preprotein translocase subunit SecB VSVS12_00421 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VSVS12_00421 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VSVS12_00422 PF00132 Bacterial transferase hexapeptide (six repeats) VSVS12_00422 PF06426 Serine acetyltransferase, N-terminal VSVS12_00423 PF03551 Transcriptional regulator PadR-like family VSVS12_00423 PF10400 Virulence activator alpha C-term VSVS12_00424 PF00311 Phosphoenolpyruvate carboxylase VSVS12_00425 PF01546 Peptidase family M20/M25/M40 VSVS12_00425 PF07687 Peptidase dimerisation domain VSVS12_00426 PF01118 Semialdehyde dehydrogenase, NAD binding domain VSVS12_00426 PF02774 Semialdehyde dehydrogenase, dimerisation domain VSVS12_00427 PF00696 Amino acid kinase family VSVS12_00428 PF00764 Arginosuccinate synthase VSVS12_00429 PF00206 Lyase VSVS12_00429 PF14698 Argininosuccinate lyase C-terminal VSVS12_00430 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VSVS12_00430 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS12_00431 PF00462 Glutaredoxin VSVS12_00431 PF08534 Redoxin VSVS12_00432 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_00432 PF03466 LysR substrate binding domain VSVS12_00433 PF01610 VSVS12_00433 VSVS12_00433 PF13542 VSVS12_00433 VSVS12_00434 PF01610 VSVS12_00434 VSVS12_00434 PF13542 VSVS12_00434 VSVS12_00435 PF00905 Penicillin binding protein transpeptidase domain VSVS12_00435 PF00912 Transglycosylase VSVS12_00435 PF17092 VSVS12_00435 VSVS12_00436 PF11104 Type IV pilus assembly protein PilM; VSVS12_00437 PF05137 VSVS12_00437 VSVS12_00438 PF04350 Pilus assembly protein, PilO VSVS12_00439 PF04351 Pilus assembly protein, PilP VSVS12_00440 PF00263 VSVS12_00440 VSVS12_00440 PF03958 Bacterial type II/III secretion system short domain VSVS12_00441 PF01202 Shikimate kinase VSVS12_00442 PF01761 3-dehydroquinate synthase VSVS12_00443 PF05036 Sporulation related domain VSVS12_00443 PF13401 AAA domain VSVS12_00444 PF02086 D12 class N6 adenine-specific DNA methyltransferase VSVS12_00445 PF00834 Ribulose-phosphate 3 epimerase family VSVS12_00446 PF13419 Haloacid dehalogenase-like hydrolase VSVS12_00447 PF00579 tRNA synthetases class I (W and Y) VSVS12_00448 PF00117 Glutamine amidotransferase class-I VSVS12_00449 PF00202 Aminotransferase class-III VSVS12_00450 PF04958 Arginine N-succinyltransferase beta subunit VSVS12_00451 PF00171 Aldehyde dehydrogenase family VSVS12_00452 PF07063 Domain of unknown function (DUF1338) VSVS12_00453 PF00027 Cyclic nucleotide-binding domain VSVS12_00453 PF00325 Bacterial regulatory proteins, crp family VSVS12_00455 PF00485 Phosphoribulokinase / Uridine kinase family VSVS12_00456 PF06794 Uncharacterised protein family (UPF0270) VSVS12_00457 PF00561 alpha/beta hydrolase fold VSVS12_00458 PF09523 VSVS12_00458 VSVS12_00459 PF00005 ABC transporter VSVS12_00459 PF12848 ABC transporter VSVS12_00459 PF16326 VSVS12_00459 VSVS12_00460 PF02525 Flavodoxin-like fold VSVS12_00461 PF00999 Sodium/hydrogen exchanger family VSVS12_00461 PF02254 TrkA-N domain VSVS12_00462 PF09526 VSVS12_00462 VSVS12_00463 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VSVS12_00464 PF01112 Asparaginase VSVS12_00465 PF00709 Adenylosuccinate synthetase VSVS12_00466 PF08238 Sel1 repeat VSVS12_00467 PF01979 Amidohydrolase family VSVS12_00468 PF00575 S1 RNA binding domain VSVS12_00468 PF00773 RNB domain VSVS12_00468 PF08206 Ribonuclease B OB domain VSVS12_00468 PF08461 Ribonuclease R winged-helix domain VSVS12_00469 PF00588 SpoU rRNA Methylase family VSVS12_00469 PF08032 RNA 2'-O ribose methyltransferase substrate binding VSVS12_00470 PF00338 Ribosomal protein S10p/S20e VSVS12_00471 PF00297 Ribosomal protein L3 VSVS12_00472 PF00573 Ribosomal protein L4/L1 family VSVS12_00473 PF00276 Ribosomal protein L23 VSVS12_00474 PF00181 Ribosomal Proteins L2, RNA binding domain VSVS12_00474 PF03947 Ribosomal Proteins L2, C-terminal domain VSVS12_00475 PF00203 Ribosomal protein S19 VSVS12_00476 PF00237 Ribosomal protein L22p/L17e VSVS12_00477 PF00189 Ribosomal protein S3, C-terminal domain VSVS12_00477 PF07650 KH domain VSVS12_00478 PF00252 Ribosomal protein L16p/L10e VSVS12_00479 PF00831 Ribosomal L29 protein VSVS12_00480 PF00366 Ribosomal protein S17 VSVS12_00481 PF00238 Ribosomal protein L14p/L23e VSVS12_00482 PF00467 KOW motif VSVS12_00482 PF17136 VSVS12_00482 VSVS12_00483 PF00281 Ribosomal protein L5 VSVS12_00483 PF00673 ribosomal L5P family C-terminus VSVS12_00484 PF00253 Ribosomal protein S14p/S29e VSVS12_00485 PF00410 Ribosomal protein S8 VSVS12_00486 PF00347 Ribosomal protein L6 VSVS12_00487 PF00861 Ribosomal L18p/L5e family VSVS12_00488 PF00333 Ribosomal protein S5, N-terminal domain VSVS12_00488 PF03719 Ribosomal protein S5, C-terminal domain VSVS12_00489 PF00327 Ribosomal protein L30p/L7e VSVS12_00490 PF00828 Ribosomal protein L18e/L15 VSVS12_00491 PF00344 SecY translocase VSVS12_00492 PF00444 Ribosomal protein L36 VSVS12_00493 PF00416 Ribosomal protein S13/S18 VSVS12_00494 PF00411 Ribosomal protein S11 VSVS12_00495 PF00163 Ribosomal protein S4/S9 N-terminal domain VSVS12_00495 PF01479 S4 domain VSVS12_00496 PF01000 RNA polymerase Rpb3/RpoA insert domain VSVS12_00496 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain VSVS12_00496 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain VSVS12_00497 PF01196 Ribosomal protein L17 VSVS12_00498 PF11075 VSVS12_00498 VSVS12_00499 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VSVS12_00499 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VSVS12_00500 PF04225 Opacity-associated protein A LysM-like domain VSVS12_00500 PF08525 VSVS12_00500 VSVS12_00501 PF00892 EamA-like transporter family VSVS12_00502 PF13673 Acetyltransferase (GNAT) domain VSVS12_00503 PF00027 Cyclic nucleotide-binding domain VSVS12_00504 PF00149 Calcineurin-like phosphoesterase VSVS12_00504 PF02872 5'-nucleotidase, C-terminal domain VSVS12_00505 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VSVS12_00506 PF01507 Phosphoadenosine phosphosulfate reductase family VSVS12_00507 PF00009 Elongation factor Tu GTP binding domain VSVS12_00508 PF02080 TrkA-C domain VSVS12_00508 PF03600 Citrate transporter VSVS12_00509 PF01583 Adenylylsulphate kinase VSVS12_00510 PF13690 Chemotaxis phosphatase CheX VSVS12_00511 PF01475 Ferric uptake regulator family VSVS12_00512 PF01207 Dihydrouridine synthase (Dus) VSVS12_00513 PF09583 VSVS12_00513 VSVS12_00516 PF00175 Oxidoreductase NAD-binding domain VSVS12_00516 PF00258 Flavodoxin VSVS12_00516 PF00667 FAD binding domain VSVS12_00517 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VSVS12_00517 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VSVS12_00518 PF01507 Phosphoadenosine phosphosulfate reductase family VSVS12_00531 PF09335 VSVS12_00531 VSVS12_00532 PF00999 Sodium/hydrogen exchanger family VSVS12_00533 PF00809 Pterin binding enzyme VSVS12_00533 PF02310 B12 binding domain VSVS12_00533 PF02574 Homocysteine S-methyltransferase VSVS12_00533 PF02607 B12 binding domain VSVS12_00533 PF02965 Vitamin B12 dependent methionine synthase, activation domain VSVS12_00534 PF00571 CBS domain VSVS12_00534 PF01769 Divalent cation transporter VSVS12_00534 PF03448 MgtE intracellular N domain VSVS12_00535 PF00381 PTS HPr component phosphorylation site VSVS12_00536 PF03668 VSVS12_00536 VSVS12_00537 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VSVS12_00538 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VSVS12_00539 PF00309 VSVS12_00539 VSVS12_00539 PF04552 Sigma-54, DNA binding domain VSVS12_00539 PF04963 Sigma-54 factor, core binding domain VSVS12_00540 PF00005 ABC transporter VSVS12_00540 PF12399 Branched-chain amino acid ATP-binding cassette transporter VSVS12_00541 PF03968 OstA-like protein VSVS12_00542 PF06835 Lipopolysaccharide-assembly, LptC-related VSVS12_00543 PF08282 haloacid dehalogenase-like hydrolase VSVS12_00544 PF00571 CBS domain VSVS12_00544 PF01380 SIS domain VSVS12_00545 PF01699 Sodium/calcium exchanger protein VSVS12_00546 PF00005 ABC transporter VSVS12_00546 PF12399 Branched-chain amino acid ATP-binding cassette transporter VSVS12_00547 PF02405 VSVS12_00547 VSVS12_00548 PF02470 VSVS12_00548 VSVS12_00549 PF05494 Toluene tolerance, Ttg2 VSVS12_00550 PF13466 STAS domain VSVS12_00551 PF01722 BolA-like protein VSVS12_00552 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VSVS12_00553 PF01553 Acyltransferase VSVS12_00554 PF00144 Beta-lactamase VSVS12_00560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_00560 PF17200 VSVS12_00560 VSVS12_00565 PF01464 Transglycosylase SLT domain VSVS12_00565 PF11873 Domain of unknown function (DUF3393) VSVS12_00566 PF04362 Bacterial Fe(2+) trafficking VSVS12_00567 PF00633 Helix-hairpin-helix motif VSVS12_00567 PF00730 HhH-GPD superfamily base excision DNA repair protein VSVS12_00567 PF14815 NUDIX domain VSVS12_00568 PF02390 Putative methyltransferase VSVS12_00569 PF04960 Glutaminase VSVS12_00570 PF04055 Radical SAM superfamily VSVS12_00570 PF06969 HemN C-terminal domain VSVS12_00571 PF01725 Ham1 family VSVS12_00572 PF14467 Domain of unknown function (DUF4426) VSVS12_00573 PF02594 Uncharacterised ACR, YggU family COG1872 VSVS12_00574 PF02325 VSVS12_00574 VSVS12_00575 PF03807 NADP oxidoreductase coenzyme F420-dependent VSVS12_00575 PF14748 Pyrroline-5-carboxylate reductase dimerisation VSVS12_00576 PF01168 Alanine racemase, N-terminal domain VSVS12_00577 PF00437 Type II/IV secretion system protein VSVS12_00578 PF00437 Type II/IV secretion system protein VSVS12_00579 PF00696 Amino acid kinase family VSVS12_00580 PF00266 Aminotransferase class-V VSVS12_00581 PF04932 VSVS12_00581 VSVS12_00581 PF11846 VSVS12_00581 VSVS12_00581 PF15864 VSVS12_00581 VSVS12_00582 PF00005 ABC transporter VSVS12_00583 PF00483 Nucleotidyl transferase VSVS12_00584 PF00196 Bacterial regulatory proteins, luxR family VSVS12_00585 PF00436 Single-strand binding protein family VSVS12_00586 PF00563 EAL domain VSVS12_00586 PF00990 GGDEF domain VSVS12_00586 PF17157 VSVS12_00586 VSVS12_00588 PF04612 Type II secretion system (T2SS), protein M VSVS12_00590 PF00263 VSVS12_00590 VSVS12_00590 PF07655 VSVS12_00590 VSVS12_00591 PF13401 AAA domain VSVS12_00592 PF14559 Tetratricopeptide repeat VSVS12_00593 PF00437 Type II/IV secretion system protein VSVS12_00593 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VSVS12_00594 PF01609 Transposase DDE domain VSVS12_00595 PF00437 Type II/IV secretion system protein VSVS12_00596 PF00482 Type II secretion system (T2SS), protein F VSVS12_00598 PF07963 Prokaryotic N-terminal methylation motif VSVS12_00599 PF07963 Prokaryotic N-terminal methylation motif VSVS12_00600 PF07963 Prokaryotic N-terminal methylation motif VSVS12_00601 PF07963 Prokaryotic N-terminal methylation motif VSVS12_00602 PF07963 Prokaryotic N-terminal methylation motif VSVS12_00606 PF06723 MreB/Mbl protein VSVS12_00607 PF04085 rod shape-determining protein MreC VSVS12_00608 PF04093 VSVS12_00608 VSVS12_00609 PF02545 Maf-like protein VSVS12_00610 PF00575 S1 RNA binding domain VSVS12_00610 PF10150 Ribonuclease E/G family VSVS12_00611 PF13116 VSVS12_00611 VSVS12_00611 PF13502 VSVS12_00611 VSVS12_00612 PF00795 Carbon-nitrogen hydrolase VSVS12_00613 PF01523 Putative modulator of DNA gyrase VSVS12_00615 PF02274 Amidinotransferase VSVS12_00616 PF06877 Regulator of ribonuclease activity B VSVS12_00617 PF00589 Phage integrase family VSVS12_00621 PF03235 VSVS12_00621 VSVS12_00622 PF13354 Beta-lactamase enzyme family VSVS12_00625 PF09834 VSVS12_00625 VSVS12_00626 PF00582 Universal stress protein family VSVS12_00627 PF06808 VSVS12_00627 VSVS12_00627 PF11874 VSVS12_00627 VSVS12_00628 PF16868 VSVS12_00628 VSVS12_00629 PF01316 Arginine repressor, DNA binding domain VSVS12_00629 PF02863 Arginine repressor, C-terminal domain VSVS12_00630 PF00056 lactate/malate dehydrogenase, NAD binding domain VSVS12_00630 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VSVS12_00632 PF00348 Polyprenyl synthetase VSVS12_00633 PF00829 Ribosomal prokaryotic L21 protein VSVS12_00634 PF01016 Ribosomal L27 protein VSVS12_00635 PF01018 GTP1/OBG VSVS12_00635 PF01926 50S ribosome-binding GTPase VSVS12_00636 PF06738 VSVS12_00636 VSVS12_00637 PF12821 VSVS12_00637 VSVS12_00638 PF00186 Dihydrofolate reductase VSVS12_00639 PF00149 Calcineurin-like phosphoesterase VSVS12_00640 PF04379 Protein of unknown function (DUF525) VSVS12_00641 PF00398 Ribosomal RNA adenine dimethylase VSVS12_00642 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VSVS12_00643 PF00639 PPIC-type PPIASE domain VSVS12_00643 PF09312 SurA N-terminal domain VSVS12_00644 PF03968 OstA-like protein VSVS12_00644 PF04453 Organic solvent tolerance protein VSVS12_00645 PF00226 DnaJ domain VSVS12_00645 PF05099 Tellurite resistance protein TerB VSVS12_00646 PF01042 Endoribonuclease L-PSP VSVS12_00647 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VSVS12_00647 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VSVS12_00648 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VSVS12_00648 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VSVS12_00649 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VSVS12_00649 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VSVS12_00650 PF02562 PhoH-like protein VSVS12_00650 PF13638 PIN domain VSVS12_00651 PF00176 SNF2 family N-terminal domain VSVS12_00651 PF00271 Helicase conserved C-terminal domain VSVS12_00651 PF12137 RNA polymerase recycling family C-terminal VSVS12_00652 PF00849 RNA pseudouridylate synthase VSVS12_00653 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VSVS12_00653 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VSVS12_00654 PF00133 tRNA synthetases class I (I, L, M and V) VSVS12_00654 PF08264 Anticodon-binding domain of tRNA VSVS12_00654 PF10458 Valyl tRNA synthetase tRNA binding arm VSVS12_00655 PF04364 DNA polymerase III chi subunit, HolC VSVS12_00656 PF00883 Cytosol aminopeptidase family, catalytic domain VSVS12_00656 PF02789 Cytosol aminopeptidase family, N-terminal domain VSVS12_00657 PF03739 VSVS12_00657 VSVS12_00658 PF03739 VSVS12_00658 VSVS12_00660 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain VSVS12_00660 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain VSVS12_00661 PF01510 N-acetylmuramoyl-L-alanine amidase VSVS12_00662 PF00258 Flavodoxin VSVS12_00663 PF00589 Phage integrase family VSVS12_00663 PF02899 Phage integrase, N-terminal SAM-like domain VSVS12_00664 PF10411 Disulfide bond isomerase protein N-terminus VSVS12_00664 PF13098 Thioredoxin-like domain VSVS12_00665 PF01368 DHH family VSVS12_00665 PF02272 DHHA1 domain VSVS12_00666 PF00392 Bacterial regulatory proteins, gntR family VSVS12_00666 PF07729 FCD domain VSVS12_00667 PF00456 Transketolase, thiamine diphosphate binding domain VSVS12_00668 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VSVS12_00668 PF00364 Biotin-requiring enzyme VSVS12_00668 PF02817 e3 binding domain VSVS12_00669 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VSVS12_00669 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS12_00670 PF00440 Bacterial regulatory proteins, tetR family VSVS12_00671 PF00156 Phosphoribosyl transferase domain VSVS12_00672 PF00484 Carbonic anhydrase VSVS12_00673 PF00916 VSVS12_00673 VSVS12_00674 PF01609 Transposase DDE domain VSVS12_00675 PF00916 VSVS12_00675 VSVS12_00675 PF01740 STAS domain VSVS12_00676 PF00005 ABC transporter VSVS12_00677 PF01061 VSVS12_00677 VSVS12_00678 PF02569 Pantoate-beta-alanine ligase VSVS12_00679 PF02548 Ketopantoate hydroxymethyltransferase VSVS12_00680 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VSVS12_00681 PF01743 Poly A polymerase head domain VSVS12_00681 PF12626 Polymerase A arginine-rich C-terminus VSVS12_00681 PF12627 Probable RNA and SrmB- binding site of polymerase A VSVS12_00682 PF00749 tRNA synthetases class I (E and Q), catalytic domain VSVS12_00683 PF01258 Prokaryotic dksA/traR C4-type zinc finger VSVS12_00684 PF03749 Sugar fermentation stimulation protein VSVS12_00685 PF00270 DEAD/DEAH box helicase VSVS12_00685 PF00271 Helicase conserved C-terminal domain VSVS12_00685 PF04408 Helicase associated domain (HA2) VSVS12_00685 PF08482 VSVS12_00685 VSVS12_00686 PF00905 Penicillin binding protein transpeptidase domain VSVS12_00686 PF00912 Transglycosylase VSVS12_00686 PF14814 Bifunctional transglycosylase second domain VSVS12_00687 PF01734 Patatin-like phospholipase VSVS12_00687 PF07244 Surface antigen variable number repeat VSVS12_00688 PF00330 Aconitase family (aconitate hydratase) VSVS12_00688 PF06434 Aconitate hydratase 2 N-terminus VSVS12_00688 PF11791 Aconitate B N-terminal domain VSVS12_00689 PF02595 Glycerate kinase family VSVS12_00690 PF02447 VSVS12_00690 VSVS12_00691 PF05651 VSVS12_00691 VSVS12_00691 PF13556 PucR C-terminal helix-turn-helix domain VSVS12_00692 PF06062 VSVS12_00692 VSVS12_00693 PF00543 Nitrogen regulatory protein P-II VSVS12_00694 PF00909 Ammonium Transporter Family VSVS12_00695 PF13343 Bacterial extracellular solute-binding protein VSVS12_00696 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_00697 PF00005 ABC transporter VSVS12_00697 PF08402 TOBE domain VSVS12_00698 PF13467 Ribbon-helix-helix domain VSVS12_00699 PF01965 DJ-1/PfpI family VSVS12_00700 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VSVS12_00700 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VSVS12_00700 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VSVS12_00700 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VSVS12_00701 PF06165 Glycosyltransferase family 36 VSVS12_00701 PF17167 VSVS12_00701 VSVS12_00702 PF00728 Glycosyl hydrolase family 20, catalytic domain VSVS12_00702 PF02838 Glycosyl hydrolase family 20, domain 2 VSVS12_00703 PF01869 BadF/BadG/BcrA/BcrD ATPase family VSVS12_00704 PF00759 Glycosyl hydrolase family 9 VSVS12_00704 PF02927 N-terminal ig-like domain of cellulase VSVS12_00705 PF00005 ABC transporter VSVS12_00705 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VSVS12_00706 PF00005 ABC transporter VSVS12_00706 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VSVS12_00707 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_00707 PF12911 VSVS12_00707 VSVS12_00708 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_00709 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VSVS12_00710 PF00072 Response regulator receiver domain VSVS12_00710 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_00710 PF00672 HAMP domain VSVS12_00710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_00710 PF13188 PAS domain VSVS12_00711 PF05175 Methyltransferase small domain VSVS12_00711 PF08468 Methyltransferase small domain N-terminal VSVS12_00712 PF01594 VSVS12_00712 VSVS12_00714 PF00202 Aminotransferase class-III VSVS12_00715 PF01521 Iron-sulphur cluster biosynthesis VSVS12_00716 PF16576 VSVS12_00716 VSVS12_00717 PF00873 AcrB/AcrD/AcrF family VSVS12_00718 PF01551 Peptidase family M23 VSVS12_00718 PF08525 VSVS12_00718 VSVS12_00719 PF00579 tRNA synthetases class I (W and Y) VSVS12_00720 PF01769 Divalent cation transporter VSVS12_00721 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family VSVS12_00722 PF13609 Gram-negative porin VSVS12_00723 PF01272 Transcription elongation factor, GreA/GreB, C-term VSVS12_00723 PF03449 Transcription elongation factor, N-terminal VSVS12_00724 PF01985 CRS1 / YhbY (CRM) domain VSVS12_00725 PF01728 FtsJ-like methyltransferase VSVS12_00726 PF00004 ATPase family associated with various cellular activities (AAA) VSVS12_00726 PF01434 Peptidase family M41 VSVS12_00726 PF06480 FtsH Extracellular VSVS12_00727 PF00809 Pterin binding enzyme VSVS12_00728 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VSVS12_00728 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VSVS12_00728 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VSVS12_00728 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VSVS12_00729 PF03840 Preprotein translocase SecG subunit VSVS12_00732 PF02576 Uncharacterised BCR, YhbC family COG0779 VSVS12_00732 PF17384 VSVS12_00732 VSVS12_00733 PF08529 NusA N-terminal domain VSVS12_00733 PF13184 NusA-like KH domain VSVS12_00733 PF14520 Helix-hairpin-helix domain VSVS12_00734 PF00009 Elongation factor Tu GTP binding domain VSVS12_00734 PF04760 Translation initiation factor IF-2, N-terminal region VSVS12_00734 PF08364 VSVS12_00734 VSVS12_00734 PF11987 Translation-initiation factor 2 VSVS12_00735 PF02033 Ribosome-binding factor A VSVS12_00736 PF01509 TruB family pseudouridylate synthase (N terminal domain) VSVS12_00736 PF09157 Pseudouridine synthase II TruB, C-terminal VSVS12_00736 PF16198 VSVS12_00736 VSVS12_00737 PF07386 VSVS12_00737 VSVS12_00739 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS12_00739 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VSVS12_00740 PF00310 Glutamine amidotransferases class-II VSVS12_00740 PF01493 GXGXG motif VSVS12_00740 PF01645 Conserved region in glutamate synthase VSVS12_00740 PF04898 Glutamate synthase central domain VSVS12_00741 PF04055 Radical SAM superfamily VSVS12_00741 PF16199 VSVS12_00741 VSVS12_00742 PF00990 GGDEF domain VSVS12_00742 PF08448 PAS fold VSVS12_00743 PF00072 Response regulator receiver domain VSVS12_00743 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_00743 PF01627 Hpt domain VSVS12_00743 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_00743 PF08448 PAS fold VSVS12_00747 PF00248 Aldo/keto reductase family VSVS12_00749 PF02976 DNA mismatch repair enzyme MutH VSVS12_00750 PF00293 NUDIX domain VSVS12_00751 PF00391 PEP-utilising enzyme, mobile domain VSVS12_00751 PF01590 GAF domain VSVS12_00751 PF02896 PEP-utilising enzyme, TIM barrel domain VSVS12_00751 PF05524 PEP-utilising enzyme, N-terminal VSVS12_00752 PF01925 VSVS12_00752 VSVS12_00753 PF01790 VSVS12_00753 VSVS12_00754 PF00303 Thymidylate synthase VSVS12_00755 PF02690 VSVS12_00755 VSVS12_00756 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_00756 PF03466 LysR substrate binding domain VSVS12_00757 PF01022 Bacterial regulatory protein, arsR family VSVS12_00758 PF01649 Ribosomal protein S20 VSVS12_00759 PF03023 VSVS12_00759 VSVS12_00760 PF01687 Riboflavin kinase VSVS12_00760 PF06574 FAD synthetase VSVS12_00761 PF00133 tRNA synthetases class I (I, L, M and V) VSVS12_00761 PF06827 Zinc finger found in FPG and IleRS VSVS12_00761 PF08264 Anticodon-binding domain of tRNA VSVS12_00762 PF01252 VSVS12_00762 VSVS12_00763 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VSVS12_00764 PF02401 LytB protein VSVS12_00765 PF02554 VSVS12_00765 VSVS12_00765 PF13722 VSVS12_00765 VSVS12_00766 PF10973 VSVS12_00766 VSVS12_00767 PF03702 Uncharacterised protein family (UPF0075) VSVS12_00768 PF00933 Glycosyl hydrolase family 3 N terminal domain VSVS12_00770 PF00072 Response regulator receiver domain VSVS12_00770 PF04397 LytTr DNA-binding domain VSVS12_00771 PF06580 VSVS12_00771 VSVS12_00771 PF07694 5TMR of 5TMR-LYT VSVS12_00771 PF13492 GAF domain VSVS12_00772 PF00793 DAHP synthetase I family VSVS12_00773 PF01817 Chorismate mutase type II VSVS12_00773 PF02153 Prephenate dehydrogenase VSVS12_00774 PF01551 Peptidase family M23 VSVS12_00775 PF07238 PilZ domain VSVS12_00776 PF00005 ABC transporter VSVS12_00776 PF12848 ABC transporter VSVS12_00777 PF01464 Transglycosylase SLT domain VSVS12_00777 PF14718 Soluble lytic murein transglycosylase L domain VSVS12_00778 PF01371 Trp repressor protein VSVS12_00779 PF01931 Protein of unknown function DUF84 VSVS12_00780 PF00563 EAL domain VSVS12_00780 PF00990 GGDEF domain VSVS12_00781 PF13416 Bacterial extracellular solute-binding protein VSVS12_00782 PF00800 Prephenate dehydratase VSVS12_00782 PF01817 Chorismate mutase type II VSVS12_00783 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VSVS12_00784 PF00497 Bacterial extracellular solute-binding proteins, family 3 VSVS12_00784 PF01464 Transglycosylase SLT domain VSVS12_00786 PF00665 Integrase core domain VSVS12_00787 PF13525 Outer membrane lipoprotein VSVS12_00788 PF00849 RNA pseudouridylate synthase VSVS12_00788 PF01479 S4 domain VSVS12_00789 PF02578 Multi-copper polyphenol oxidoreductase laccase VSVS12_00790 PF00004 ATPase family associated with various cellular activities (AAA) VSVS12_00790 PF02861 Clp amino terminal domain VSVS12_00790 PF07724 AAA domain (Cdc48 subfamily) VSVS12_00790 PF10431 C-terminal, D2-small domain, of ClpB protein VSVS12_00798 PF13358 DDE superfamily endonuclease VSVS12_00799 PF13551 Winged helix-turn helix VSVS12_00799 PF13592 VSVS12_00799 VSVS12_00802 PF00665 Integrase core domain VSVS12_00804 PF00459 Inositol monophosphatase family VSVS12_00805 PF00588 SpoU rRNA Methylase family VSVS12_00806 PF02082 Transcriptional regulator VSVS12_00807 PF00266 Aminotransferase class-V VSVS12_00808 PF01592 NifU-like N terminal domain VSVS12_00809 PF01521 Iron-sulphur cluster biosynthesis VSVS12_00810 PF00226 DnaJ domain VSVS12_00810 PF07743 HSCB C-terminal oligomerisation domain VSVS12_00811 PF00012 Hsp70 protein VSVS12_00812 PF00111 2Fe-2S iron-sulfur cluster binding domain VSVS12_00813 PF04384 Iron-sulphur cluster assembly VSVS12_00814 PF00883 Cytosol aminopeptidase family, catalytic domain VSVS12_00814 PF12404 VSVS12_00814 VSVS12_00815 PF00334 Nucleoside diphosphate kinase VSVS12_00816 PF00266 Aminotransferase class-V VSVS12_00817 PF01965 DJ-1/PfpI family VSVS12_00818 PF02558 Ketopantoate reductase PanE/ApbA VSVS12_00818 PF08546 Ketopantoate reductase PanE/ApbA C terminal VSVS12_00819 PF03502 Nucleoside-specific channel-forming protein, Tsx VSVS12_00820 PF02190 ATP-dependent protease La (LON) domain VSVS12_00821 PF04542 Sigma-70 region 2 VSVS12_00821 PF04545 Sigma-70, region 4 VSVS12_00822 PF12973 ChrR Cupin-like domain VSVS12_00823 PF07690 Major Facilitator Superfamily VSVS12_00824 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VSVS12_00825 PF03923 VSVS12_00825 VSVS12_00826 PF05175 Methyltransferase small domain VSVS12_00827 PF01722 BolA-like protein VSVS12_00828 PF05896 VSVS12_00828 VSVS12_00828 PF11973 VSVS12_00828 VSVS12_00829 PF03116 VSVS12_00829 VSVS12_00830 PF04205 FMN-binding domain VSVS12_00831 PF02508 VSVS12_00831 VSVS12_00832 PF02508 VSVS12_00832 VSVS12_00833 PF00111 2Fe-2S iron-sulfur cluster binding domain VSVS12_00833 PF00175 Oxidoreductase NAD-binding domain VSVS12_00833 PF00970 Oxidoreductase FAD-binding domain VSVS12_00834 PF02424 ApbE family VSVS12_00835 PF04400 VSVS12_00835 VSVS12_00836 PF00072 Response regulator receiver domain VSVS12_00836 PF00990 GGDEF domain VSVS12_00837 PF00817 impB/mucB/samB family VSVS12_00837 PF11799 impB/mucB/samB family C-terminal domain VSVS12_00838 PF01272 Transcription elongation factor, GreA/GreB, C-term VSVS12_00839 PF11101 VSVS12_00839 VSVS12_00840 PF00209 Sodium:neurotransmitter symporter family VSVS12_00841 PF01609 Transposase DDE domain VSVS12_00841 PF13006 VSVS12_00841 VSVS12_00842 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VSVS12_00843 PF08443 RimK-like ATP-grasp domain VSVS12_00844 PF05618 Putative ATP-dependant zinc protease VSVS12_00845 PF01546 Peptidase family M20/M25/M40 VSVS12_00845 PF07687 Peptidase dimerisation domain VSVS12_00846 PF00860 Permease family VSVS12_00847 PF00156 Phosphoribosyl transferase domain VSVS12_00848 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) VSVS12_00849 PF07417 Transcriptional regulator Crl VSVS12_00850 PF00696 Amino acid kinase family VSVS12_00850 PF01472 PUA domain VSVS12_00851 PF00171 Aldehyde dehydrogenase family VSVS12_00852 PF03477 ATP cone domain VSVS12_00853 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VSVS12_00853 PF01872 RibD C-terminal domain VSVS12_00854 PF00677 Lumazine binding domain VSVS12_00855 PF00925 GTP cyclohydrolase II VSVS12_00855 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VSVS12_00856 PF00885 6,7-dimethyl-8-ribityllumazine synthase VSVS12_00857 PF01029 NusB family VSVS12_00858 PF00586 AIR synthase related protein, N-terminal domain VSVS12_00858 PF02769 AIR synthase related protein, C-terminal domain VSVS12_00859 PF04608 Phosphatidylglycerophosphatase A VSVS12_00860 PF01527 Transposase VSVS12_00861 PF00665 Integrase core domain VSVS12_00861 PF13276 VSVS12_00861 VSVS12_00862 PF11944 VSVS12_00862 VSVS12_00863 PF01842 ACT domain VSVS12_00863 PF01909 Nucleotidyltransferase domain VSVS12_00863 PF01966 HD domain VSVS12_00863 PF08335 GlnD PII-uridylyltransferase VSVS12_00864 PF00557 Metallopeptidase family M24 VSVS12_00865 PF00318 Ribosomal protein S2 VSVS12_00866 PF00889 Elongation factor TS VSVS12_00867 PF00696 Amino acid kinase family VSVS12_00868 PF01765 Ribosome recycling factor VSVS12_00869 PF01255 Putative undecaprenyl diphosphate synthase VSVS12_00870 PF01148 Cytidylyltransferase family VSVS12_00871 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase VSVS12_00871 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal VSVS12_00871 PF13288 DXP reductoisomerase C-terminal domain VSVS12_00872 PF00595 PDZ domain (Also known as DHR or GLGF) VSVS12_00872 PF02163 Peptidase family M50 VSVS12_00873 PF01103 Surface antigen VSVS12_00873 PF07244 Surface antigen variable number repeat VSVS12_00874 PF03938 Outer membrane protein (OmpH-like) VSVS12_00875 PF00132 Bacterial transferase hexapeptide (six repeats) VSVS12_00875 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VSVS12_00875 PF14602 Hexapeptide repeat of succinyl-transferase VSVS12_00876 PF07977 FabA-like domain VSVS12_00877 PF00132 Bacterial transferase hexapeptide (six repeats) VSVS12_00877 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 VSVS12_00878 PF02684 VSVS12_00878 VSVS12_00879 PF01351 Ribonuclease HII VSVS12_00880 PF01336 OB-fold nucleic acid binding domain VSVS12_00880 PF02811 PHP domain VSVS12_00880 PF07733 Bacterial DNA polymerase III alpha subunit VSVS12_00880 PF14579 Helix-hairpin-helix motif VSVS12_00881 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit VSVS12_00882 PF01171 PP-loop family VSVS12_00882 PF09179 TilS substrate binding domain VSVS12_00882 PF11734 TilS substrate C-terminal domain VSVS12_00883 PF00543 Nitrogen regulatory protein P-II VSVS12_00884 PF03372 Endonuclease/Exonuclease/phosphatase family VSVS12_00885 PF06930 VSVS12_00885 VSVS12_00886 PF01464 Transglycosylase SLT domain VSVS12_00886 PF01476 LysM domain VSVS12_00887 PF00753 Metallo-beta-lactamase superfamily VSVS12_00887 PF16123 VSVS12_00887 VSVS12_00888 PF08241 Methyltransferase domain VSVS12_00889 PF00075 RNase H VSVS12_00890 PF00929 Exonuclease VSVS12_00892 PF01609 Transposase DDE domain VSVS12_00892 PF13006 VSVS12_00892 VSVS12_00893 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VSVS12_00893 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VSVS12_00893 PF09317 VSVS12_00893 VSVS12_00894 PF13580 SIS domain VSVS12_00895 PF13230 Glutamine amidotransferases class-II VSVS12_00897 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VSVS12_00897 PF03129 Anticodon binding domain VSVS12_00897 PF04073 Aminoacyl-tRNA editing domain VSVS12_00898 PF01980 Uncharacterised protein family UPF0066 VSVS12_00899 PF01197 Ribosomal protein L31 VSVS12_00900 PF00444 Ribosomal protein L36 VSVS12_00901 PF03180 NLPA lipoprotein VSVS12_00902 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_00903 PF00005 ABC transporter VSVS12_00903 PF09383 NIL domain VSVS12_00904 PF13242 HAD-hyrolase-like VSVS12_00905 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme VSVS12_00906 PF02588 VSVS12_00906 VSVS12_00907 PF00464 Serine hydroxymethyltransferase VSVS12_00909 PF04055 Radical SAM superfamily VSVS12_00909 PF16881 VSVS12_00909 VSVS12_00910 PF03099 Biotin/lipoate A/B protein ligase family VSVS12_00911 PF04359 Protein of unknown function (DUF493) VSVS12_00912 PF00768 D-alanyl-D-alanine carboxypeptidase VSVS12_00912 PF07943 Penicillin-binding protein 5, C-terminal domain VSVS12_00913 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel VSVS12_00913 PF05036 Sporulation related domain VSVS12_00914 PF01098 VSVS12_00914 VSVS12_00915 PF00905 Penicillin binding protein transpeptidase domain VSVS12_00915 PF03717 Penicillin-binding Protein dimerisation domain VSVS12_00916 PF02590 Predicted SPOUT methyltransferase VSVS12_00917 PF02410 Oligomerisation domain VSVS12_00918 PF06144 DNA polymerase III, delta subunit VSVS12_00918 PF14840 Processivity clamp loader gamma complex DNA pol III C-term VSVS12_00919 PF04390 Lipopolysaccharide-assembly VSVS12_00920 PF00133 tRNA synthetases class I (I, L, M and V) VSVS12_00920 PF08264 Anticodon-binding domain of tRNA VSVS12_00920 PF13603 Leucyl-tRNA synthetase, Domain 2 VSVS12_00921 PF07295 VSVS12_00921 VSVS12_00922 PF00795 Carbon-nitrogen hydrolase VSVS12_00923 PF00571 CBS domain VSVS12_00923 PF03471 Transporter associated domain VSVS12_00924 PF02130 Uncharacterized protein family UPF0054 VSVS12_00925 PF02562 PhoH-like protein VSVS12_00926 PF00919 Uncharacterized protein family UPF0004 VSVS12_00926 PF01938 TRAM domain VSVS12_00926 PF04055 Radical SAM superfamily VSVS12_00927 PF01494 FAD binding domain VSVS12_00928 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VSVS12_00929 PF00391 PEP-utilising enzyme, mobile domain VSVS12_00929 PF02896 PEP-utilising enzyme, TIM barrel domain VSVS12_00929 PF05524 PEP-utilising enzyme, N-terminal VSVS12_00931 PF00381 PTS HPr component phosphorylation site VSVS12_00932 PF00291 Pyridoxal-phosphate dependent enzyme VSVS12_00933 PF07264 Etoposide-induced protein 2 VSVS12_00934 PF04354 ZipA, C-terminal FtsZ-binding domain VSVS12_00935 PF00533 BRCA1 C Terminus (BRCT) domain VSVS12_00935 PF01653 NAD-dependent DNA ligase adenylation domain VSVS12_00935 PF03119 NAD-dependent DNA ligase C4 zinc finger domain VSVS12_00935 PF03120 NAD-dependent DNA ligase OB-fold domain VSVS12_00935 PF12826 Helix-hairpin-helix motif VSVS12_00935 PF14520 Helix-hairpin-helix domain VSVS12_00936 PF13609 Gram-negative porin VSVS12_00937 PF09829 VSVS12_00937 VSVS12_00939 PF01957 NfeD-like C-terminal, partner-binding VSVS12_00940 PF01145 SPFH domain / Band 7 family VSVS12_00940 PF16200 VSVS12_00940 VSVS12_00941 PF00085 Thioredoxin VSVS12_00941 PF14559 Tetratricopeptide repeat VSVS12_00941 PF14561 Tetratricopeptide repeat VSVS12_00942 PF00106 short chain dehydrogenase VSVS12_00943 PF01370 NAD dependent epimerase/dehydratase family VSVS12_00943 PF08338 Domain of unknown function (DUF1731) VSVS12_00944 PF07556 VSVS12_00944 VSVS12_00945 PF07556 VSVS12_00945 VSVS12_00947 PF00571 CBS domain VSVS12_00948 PF12850 Calcineurin-like phosphoesterase superfamily domain VSVS12_00949 PF10262 Rdx family VSVS12_00950 PF01925 VSVS12_00950 VSVS12_00951 PF17323 VSVS12_00951 VSVS12_00952 PF00486 Transcriptional regulatory protein, C terminal VSVS12_00953 PF00183 Hsp90 protein VSVS12_00953 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_00954 PF00406 Adenylate kinase VSVS12_00954 PF05191 Adenylate kinase, active site lid VSVS12_00955 PF00762 Ferrochelatase VSVS12_00956 PF06178 Oligogalacturonate-specific porin protein (KdgM) VSVS12_00957 PF04214 VSVS12_00957 VSVS12_00958 PF00122 E1-E2 ATPase VSVS12_00958 PF00403 Heavy-metal-associated domain VSVS12_00958 PF00702 haloacid dehalogenase-like hydrolase VSVS12_00960 PF09829 VSVS12_00960 VSVS12_00961 PF00749 tRNA synthetases class I (E and Q), catalytic domain VSVS12_00962 PF00691 OmpA family VSVS12_00962 PF01389 OmpA-like transmembrane domain VSVS12_00965 PF16538 VSVS12_00965 VSVS12_00965 PF16539 VSVS12_00965 VSVS12_00965 PF16548 VSVS12_00965 VSVS12_00967 PF02169 LPP20 lipoprotein VSVS12_00968 PF05130 FlgN protein VSVS12_00969 PF04316 Anti-sigma-28 factor, FlgM VSVS12_00970 PF13144 SAF-like VSVS12_00971 PF00072 Response regulator receiver domain VSVS12_00971 PF01584 CheW-like domain VSVS12_00972 PF01739 CheR methyltransferase, SAM binding domain VSVS12_00972 PF03705 CheR methyltransferase, all-alpha domain VSVS12_00974 PF00460 Flagella basal body rod protein VSVS12_00974 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VSVS12_00975 PF03963 VSVS12_00975 VSVS12_00975 PF13860 FlgD Ig-like domain VSVS12_00975 PF13861 FlgD Tudor-like domain VSVS12_00976 PF00460 Flagella basal body rod protein VSVS12_00976 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VSVS12_00976 PF07559 Flagellar basal body protein FlaE VSVS12_00977 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VSVS12_00978 PF00460 Flagella basal body rod protein VSVS12_00978 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VSVS12_00979 PF02107 VSVS12_00979 VSVS12_00980 PF02119 VSVS12_00980 VSVS12_00981 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VSVS12_00981 PF10135 VSVS12_00981 VSVS12_00982 PF00460 Flagella basal body rod protein VSVS12_00982 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VSVS12_00983 PF00669 Bacterial flagellin N-terminal helical region VSVS12_00983 PF00700 Bacterial flagellin C-terminal helical region VSVS12_00984 PF00669 Bacterial flagellin N-terminal helical region VSVS12_00984 PF00700 Bacterial flagellin C-terminal helical region VSVS12_00984 PF07196 Flagellin hook IN motif VSVS12_00985 PF00669 Bacterial flagellin N-terminal helical region VSVS12_00985 PF00700 Bacterial flagellin C-terminal helical region VSVS12_00985 PF07196 Flagellin hook IN motif VSVS12_01002 PF01926 50S ribosome-binding GTPase VSVS12_01002 PF06071 Protein of unknown function (DUF933) VSVS12_01003 PF01195 Peptidyl-tRNA hydrolase VSVS12_01004 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VSVS12_01004 PF14572 Phosphoribosyl synthetase-associated domain VSVS12_01005 PF00288 GHMP kinases N terminal domain VSVS12_01005 PF08544 GHMP kinases C terminal VSVS12_01006 PF03550 Outer membrane lipoprotein LolB VSVS12_01007 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain VSVS12_01007 PF01488 Shikimate / quinate 5-dehydrogenase VSVS12_01007 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain VSVS12_01008 PF00472 RF-1 domain VSVS12_01008 PF03462 PCRF domain VSVS12_01009 PF13847 Methyltransferase domain VSVS12_01010 PF04247 VSVS12_01010 VSVS12_01011 PF13369 VSVS12_01011 VSVS12_01011 PF13371 Tetratricopeptide repeat VSVS12_01012 PF00793 DAHP synthetase I family VSVS12_01013 PF00149 Calcineurin-like phosphoesterase VSVS12_01013 PF02872 5'-nucleotidase, C-terminal domain VSVS12_01014 PF04073 Aminoacyl-tRNA editing domain VSVS12_01015 PF01610 VSVS12_01015 VSVS12_01015 PF13542 VSVS12_01015 VSVS12_01016 PF00860 Permease family VSVS12_01017 PF09839 VSVS12_01017 VSVS12_01018 PF09842 VSVS12_01018 VSVS12_01019 PF03358 NADPH-dependent FMN reductase VSVS12_01020 PF03960 ArsC family VSVS12_01021 PF01435 Peptidase family M48 VSVS12_01021 PF14559 Tetratricopeptide repeat VSVS12_01022 PF01206 Sulfurtransferase TusA VSVS12_01023 PF01594 VSVS12_01023 VSVS12_01024 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_01024 PF00672 HAMP domain VSVS12_01024 PF02743 Cache domain VSVS12_01027 PF01863 Protein of unknown function DUF45 VSVS12_01028 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VSVS12_01028 PF04851 Type III restriction enzyme, res subunit VSVS12_01030 PF01420 Type I restriction modification DNA specificity domain VSVS12_01031 PF02384 N-6 DNA Methylase VSVS12_01031 PF12161 HsdM N-terminal domain VSVS12_01032 PF08843 Nucleotidyl transferase of unknown function (DUF1814) VSVS12_01034 PF00589 Phage integrase family VSVS12_01035 PF00665 Integrase core domain VSVS12_01036 PF00239 Resolvase, N terminal domain VSVS12_01037 PF00578 AhpC/TSA family VSVS12_01039 PF00589 Phage integrase family VSVS12_01041 PF00589 Phage integrase family VSVS12_01042 PF00578 AhpC/TSA family VSVS12_01043 PF13740 ACT domain VSVS12_01044 PF00701 Dihydrodipicolinate synthetase family VSVS12_01045 PF06804 NlpB/DapX lipoprotein VSVS12_01046 PF03553 VSVS12_01046 VSVS12_01046 PF13726 VSVS12_01046 VSVS12_01047 PF00929 Exonuclease VSVS12_01048 PF00691 OmpA family VSVS12_01049 PF10952 VSVS12_01049 VSVS12_01050 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VSVS12_01051 PF00633 Helix-hairpin-helix motif VSVS12_01051 PF00730 HhH-GPD superfamily base excision DNA repair protein VSVS12_01051 PF10576 Iron-sulfur binding domain of endonuclease III VSVS12_01052 PF02508 VSVS12_01052 VSVS12_01053 PF04205 FMN-binding domain VSVS12_01054 PF03116 VSVS12_01054 VSVS12_01055 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VSVS12_01055 PF10531 SLBB domain VSVS12_01055 PF12838 4Fe-4S dicluster domain VSVS12_01055 PF13375 RnfC Barrel sandwich hybrid domain VSVS12_01056 PF04060 Putative Fe-S cluster VSVS12_01056 PF14697 4Fe-4S dicluster domain VSVS12_01057 PF02508 VSVS12_01057 VSVS12_01058 PF03605 VSVS12_01058 VSVS12_01060 PF00271 Helicase conserved C-terminal domain VSVS12_01060 PF02151 UvrB/uvrC motif VSVS12_01060 PF04851 Type III restriction enzyme, res subunit VSVS12_01060 PF12344 Ultra-violet resistance protein B VSVS12_01061 PF00072 Response regulator receiver domain VSVS12_01061 PF00158 Sigma-54 interaction domain VSVS12_01061 PF02954 Bacterial regulatory protein, Fis family VSVS12_01062 PF01627 Hpt domain VSVS12_01063 PF01933 Uncharacterised protein family UPF0052 VSVS12_01064 PF04055 Radical SAM superfamily VSVS12_01064 PF06463 Molybdenum Cofactor Synthesis C VSVS12_01064 PF13353 4Fe-4S single cluster domain VSVS12_01065 PF00994 Probable molybdopterin binding domain VSVS12_01066 PF01967 MoaC family VSVS12_01067 PF02597 ThiS family VSVS12_01068 PF02391 MoaE protein VSVS12_01069 PF00571 CBS domain VSVS12_01070 PF01554 MatE VSVS12_01071 PF00122 E1-E2 ATPase VSVS12_01071 PF00403 Heavy-metal-associated domain VSVS12_01071 PF00702 haloacid dehalogenase-like hydrolase VSVS12_01072 PF01048 Phosphorylase superfamily VSVS12_01073 PF01588 Putative tRNA binding domain VSVS12_01073 PF09334 tRNA synthetases class I (M) VSVS12_01074 PF10609 ParA/MinD ATPase like VSVS12_01075 PF00485 Phosphoribulokinase / Uridine kinase family VSVS12_01076 PF05170 VSVS12_01076 VSVS12_01077 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP VSVS12_01077 PF12557 Cob(I)alamin adenosyltransferase N terminal VSVS12_01078 PF01451 Low molecular weight phosphotyrosine protein phosphatase VSVS12_01079 PF00106 short chain dehydrogenase VSVS12_01080 PF11993 VSVS12_01080 VSVS12_01081 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VSVS12_01081 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VSVS12_01082 PF00462 Glutaredoxin VSVS12_01083 PF01131 DNA topoisomerase VSVS12_01083 PF01751 Toprim domain VSVS12_01085 PF00850 Histone deacetylase domain VSVS12_01086 PF00990 GGDEF domain VSVS12_01086 PF02743 Cache domain VSVS12_01087 PF03553 VSVS12_01087 VSVS12_01088 PF01053 Cys/Met metabolism PLP-dependent enzyme VSVS12_01089 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VSVS12_01090 PF00392 Bacterial regulatory proteins, gntR family VSVS12_01090 PF07702 UTRA domain VSVS12_01091 PF02779 Transketolase, pyrimidine binding domain VSVS12_01091 PF02780 Transketolase, C-terminal domain VSVS12_01092 PF00456 Transketolase, thiamine diphosphate binding domain VSVS12_01093 PF03611 VSVS12_01093 VSVS12_01094 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VSVS12_01095 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VSVS12_01096 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) VSVS12_01097 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VSVS12_01097 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS12_01098 PF00375 Sodium:dicarboxylate symporter family VSVS12_01099 PF01042 Endoribonuclease L-PSP VSVS12_01100 PF08348 VSVS12_01100 VSVS12_01100 PF13309 VSVS12_01100 VSVS12_01101 PF03606 VSVS12_01101 VSVS12_01102 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain VSVS12_01103 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_01103 PF03466 LysR substrate binding domain VSVS12_01106 PF00884 Sulfatase VSVS12_01106 PF11893 VSVS12_01106 VSVS12_01107 PF07208 Protein of unknown function (DUF1414) VSVS12_01108 PF04245 VSVS12_01108 VSVS12_01109 PF01627 Hpt domain VSVS12_01111 PF03553 VSVS12_01111 VSVS12_01112 PF01118 Semialdehyde dehydrogenase, NAD binding domain VSVS12_01112 PF02774 Semialdehyde dehydrogenase, dimerisation domain VSVS12_01113 PF00392 Bacterial regulatory proteins, gntR family VSVS12_01115 PF07963 Prokaryotic N-terminal methylation motif VSVS12_01116 PF00520 Ion transport protein VSVS12_01117 PF01914 VSVS12_01117 VSVS12_01118 PF00171 Aldehyde dehydrogenase family VSVS12_01118 PF00465 Iron-containing alcohol dehydrogenase VSVS12_01119 PF03776 Septum formation topological specificity factor MinE VSVS12_01120 PF13614 AAA domain VSVS12_01121 PF03775 Septum formation inhibitor MinC, C-terminal domain VSVS12_01121 PF05209 Septum formation inhibitor MinC, N-terminal domain VSVS12_01122 PF05166 YcgL domain VSVS12_01123 PF13406 Transglycosylase SLT domain VSVS12_01124 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_01124 PF03466 LysR substrate binding domain VSVS12_01125 PF01773 Na+ dependent nucleoside transporter N-terminus VSVS12_01125 PF07662 Na+ dependent nucleoside transporter C-terminus VSVS12_01125 PF07670 Nucleoside recognition VSVS12_01126 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain VSVS12_01126 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain VSVS12_01133 PF13280 VSVS12_01133 VSVS12_01134 PF11871 VSVS12_01134 VSVS12_01134 PF13487 HD domain VSVS12_01136 PF00106 short chain dehydrogenase VSVS12_01137 PF04244 Deoxyribodipyrimidine photo-lyase-related protein VSVS12_01138 PF00875 DNA photolyase VSVS12_01138 PF03441 FAD binding domain of DNA photolyase VSVS12_01140 PF00155 Aminotransferase class I and II VSVS12_01141 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit VSVS12_01142 PF01609 Transposase DDE domain VSVS12_01143 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VSVS12_01144 PF02378 Phosphotransferase system, EIIC VSVS12_01145 PF00557 Metallopeptidase family M24 VSVS12_01145 PF01321 Creatinase/Prolidase N-terminal domain VSVS12_01146 PF05343 M42 glutamyl aminopeptidase VSVS12_01147 PF05043 Mga helix-turn-helix domain VSVS12_01148 PF01609 Transposase DDE domain VSVS12_01149 PF00455 VSVS12_01149 VSVS12_01149 PF08220 DeoR-like helix-turn-helix domain VSVS12_01150 PF03830 PTS system sorbose subfamily IIB component VSVS12_01151 PF03609 VSVS12_01151 VSVS12_01152 PF03613 VSVS12_01152 VSVS12_01153 PF03610 PTS system fructose IIA component VSVS12_01154 PF07470 Glycosyl Hydrolase Family 88 VSVS12_01155 PF02502 Ribose/Galactose Isomerase VSVS12_01155 PF12408 Ribose-5-phosphate isomerase VSVS12_01156 PF10022 VSVS12_01156 VSVS12_01157 PF01614 Bacterial transcriptional regulator VSVS12_01157 PF09339 IclR helix-turn-helix domain VSVS12_01158 PF13561 Enoyl-(Acyl carrier protein) reductase VSVS12_01159 PF10688 VSVS12_01159 VSVS12_01160 PF00294 pfkB family carbohydrate kinase VSVS12_01161 PF01081 KDPG and KHG aldolase VSVS12_01162 PF01081 KDPG and KHG aldolase VSVS12_01163 PF00012 Hsp70 protein VSVS12_01164 PF02798 Glutathione S-transferase, N-terminal domain VSVS12_01164 PF13410 Glutathione S-transferase, C-terminal domain VSVS12_01166 PF05154 VSVS12_01166 VSVS12_01169 PF02696 VSVS12_01169 VSVS12_01170 PF03480 Bacterial extracellular solute-binding protein, family 7 VSVS12_01171 PF04290 VSVS12_01171 VSVS12_01172 PF06808 VSVS12_01172 VSVS12_01174 PF00005 ABC transporter VSVS12_01175 PF01032 FecCD transport family VSVS12_01176 PF01497 Periplasmic binding protein VSVS12_01177 PF02472 Biopolymer transport protein ExbD/TolR VSVS12_01178 PF01618 VSVS12_01178 VSVS12_01179 PF03544 Gram-negative bacterial TonB protein C-terminal VSVS12_01181 PF04055 Radical SAM superfamily VSVS12_01182 PF06228 Haem utilisation ChuX/HutX VSVS12_01183 PF01243 Pyridoxamine 5'-phosphate oxidase VSVS12_01184 PF07715 TonB-dependent Receptor Plug Domain VSVS12_01185 PF00593 TonB dependent receptor VSVS12_01186 PF00072 Response regulator receiver domain VSVS12_01186 PF00158 Sigma-54 interaction domain VSVS12_01186 PF02954 Bacterial regulatory protein, Fis family VSVS12_01187 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_01187 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_01187 PF02743 Cache domain VSVS12_01188 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VSVS12_01188 PF05697 Bacterial trigger factor protein (TF) VSVS12_01188 PF05698 Bacterial trigger factor protein (TF) C-terminus VSVS12_01189 PF00574 Clp protease VSVS12_01190 PF06689 ClpX C4-type zinc finger VSVS12_01190 PF07724 AAA domain (Cdc48 subfamily) VSVS12_01190 PF10431 C-terminal, D2-small domain, of ClpB protein VSVS12_01191 PF00004 ATPase family associated with various cellular activities (AAA) VSVS12_01191 PF02190 ATP-dependent protease La (LON) domain VSVS12_01191 PF05362 Lon protease (S16) C-terminal proteolytic domain VSVS12_01192 PF00216 Bacterial DNA-binding protein VSVS12_01193 PF13616 PPIC-type PPIASE domain VSVS12_01193 PF13624 SurA N-terminal domain VSVS12_01194 PF12836 Helix-hairpin-helix motif VSVS12_01195 PF02224 Cytidylate kinase VSVS12_01196 PF00575 S1 RNA binding domain VSVS12_01197 PF00216 Bacterial DNA-binding protein VSVS12_01198 PF06305 VSVS12_01198 VSVS12_01199 PF13176 Tetratricopeptide repeat VSVS12_01200 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VSVS12_01202 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_01202 PF03466 LysR substrate binding domain VSVS12_01203 PF13679 VSVS12_01203 VSVS12_01204 PF04392 ABC transporter substrate binding protein VSVS12_01205 PF02653 VSVS12_01205 VSVS12_01206 PF00005 ABC transporter VSVS12_01208 PF01207 Dihydrouridine synthase (Dus) VSVS12_01209 PF07963 Prokaryotic N-terminal methylation motif VSVS12_01210 PF02810 SEC-C motif VSVS12_01211 PF03548 Outer membrane lipoprotein carrier protein LolA VSVS12_01212 PF00004 ATPase family associated with various cellular activities (AAA) VSVS12_01212 PF12002 MgsA AAA+ ATPase C terminal VSVS12_01212 PF16193 VSVS12_01212 VSVS12_01213 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VSVS12_01213 PF02403 Seryl-tRNA synthetase N-terminal domain VSVS12_01215 PF00132 Bacterial transferase hexapeptide (six repeats) VSVS12_01215 PF12464 Maltose acetyltransferase VSVS12_01216 PF00892 EamA-like transporter family VSVS12_01217 PF00710 Asparaginase VSVS12_01218 PF01343 Peptidase family S49 VSVS12_01219 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VSVS12_01219 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS12_01221 PF00551 Formyl transferase VSVS12_01221 PF01842 ACT domain VSVS12_01223 PF13307 Helicase C-terminal domain VSVS12_01224 PF00814 Glycoprotease family VSVS12_01226 PF03843 VSVS12_01226 VSVS12_01227 PF12697 Alpha/beta hydrolase family VSVS12_01228 PF00501 AMP-binding enzyme VSVS12_01228 PF13193 AMP-binding enzyme C-terminal domain VSVS12_01229 PF00570 HRDC domain VSVS12_01229 PF01612 3'-5' exonuclease VSVS12_01231 PF13091 PLD-like domain VSVS12_01232 PF00916 VSVS12_01232 VSVS12_01232 PF01740 STAS domain VSVS12_01233 PF00575 S1 RNA binding domain VSVS12_01233 PF10150 Ribonuclease E/G family VSVS12_01234 PF00849 RNA pseudouridylate synthase VSVS12_01234 PF01479 S4 domain VSVS12_01235 PF02545 Maf-like protein VSVS12_01236 PF02620 VSVS12_01236 VSVS12_01237 PF01783 Ribosomal L32p protein family VSVS12_01238 PF02504 Fatty acid synthesis protein VSVS12_01239 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VSVS12_01239 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VSVS12_01240 PF00698 Acyl transferase domain VSVS12_01241 PF13561 Enoyl-(Acyl carrier protein) reductase VSVS12_01242 PF00550 Phosphopantetheine attachment site VSVS12_01243 PF00109 Beta-ketoacyl synthase, N-terminal domain VSVS12_01243 PF02801 Beta-ketoacyl synthase, C-terminal domain VSVS12_01244 PF01063 Aminotransferase class IV VSVS12_01245 PF02618 YceG-like family VSVS12_01246 PF02223 Thymidylate kinase VSVS12_01247 PF09115 DNA polymerase III, delta subunit, C terminal VSVS12_01247 PF13177 DNA polymerase III, delta subunit VSVS12_01248 PF01026 TatD related DNase VSVS12_01250 PF00367 phosphotransferase system, EIIB VSVS12_01250 PF02378 Phosphotransferase system, EIIC VSVS12_01253 PF00209 Sodium:neurotransmitter symporter family VSVS12_01255 PF07963 Prokaryotic N-terminal methylation motif VSVS12_01258 PF01734 Patatin-like phospholipase VSVS12_01259 PF00480 ROK family VSVS12_01260 PF00072 Response regulator receiver domain VSVS12_01260 PF01584 CheW-like domain VSVS12_01261 PF01336 OB-fold nucleic acid binding domain VSVS12_01261 PF02811 PHP domain VSVS12_01261 PF07733 Bacterial DNA polymerase III alpha subunit VSVS12_01261 PF14579 Helix-hairpin-helix motif VSVS12_01262 PF00817 impB/mucB/samB family VSVS12_01263 PF00154 recA bacterial DNA recombination protein VSVS12_01264 PF00106 short chain dehydrogenase VSVS12_01265 PF01343 Peptidase family S49 VSVS12_01265 PF08496 VSVS12_01265 VSVS12_01266 PF01116 Fructose-bisphosphate aldolase class-II VSVS12_01267 PF01979 Amidohydrolase family VSVS12_01268 PF03610 PTS system fructose IIA component VSVS12_01269 PF03613 VSVS12_01269 VSVS12_01270 PF03609 VSVS12_01270 VSVS12_01271 PF03830 PTS system sorbose subfamily IIB component VSVS12_01272 PF01380 SIS domain VSVS12_01273 PF08013 Tagatose 6 phosphate kinase VSVS12_01274 PF00455 VSVS12_01274 VSVS12_01274 PF08220 DeoR-like helix-turn-helix domain VSVS12_01275 PF00313 'Cold-shock' DNA-binding domain VSVS12_01278 PF00455 VSVS12_01278 VSVS12_01278 PF08220 DeoR-like helix-turn-helix domain VSVS12_01279 PF01694 Rhomboid family VSVS12_01280 PF03942 VSVS12_01280 VSVS12_01281 PF01966 HD domain VSVS12_01281 PF13286 Phosphohydrolase-associated domain VSVS12_01282 PF13023 HD domain VSVS12_01283 PF00155 Aminotransferase class I and II VSVS12_01284 PF00425 chorismate binding enzyme VSVS12_01285 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VSVS12_01285 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VSVS12_01285 PF16582 VSVS12_01285 VSVS12_01286 PF12697 Alpha/beta hydrolase family VSVS12_01287 PF00378 Enoyl-CoA hydratase/isomerase family VSVS12_01288 PF13378 Enolase C-terminal domain-like VSVS12_01289 PF00501 AMP-binding enzyme VSVS12_01289 PF13193 AMP-binding enzyme C-terminal domain VSVS12_01290 PF00367 phosphotransferase system, EIIB VSVS12_01290 PF02378 Phosphotransferase system, EIIC VSVS12_01291 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_01291 PF03466 LysR substrate binding domain VSVS12_01293 PF03601 VSVS12_01293 VSVS12_01294 PF01553 Acyltransferase VSVS12_01294 PF07690 Major Facilitator Superfamily VSVS12_01295 PF13305 WHG domain VSVS12_01296 PF04280 Tim44-like domain VSVS12_01297 PF06844 Protein of unknown function (DUF1244) VSVS12_01298 PF00291 Pyridoxal-phosphate dependent enzyme VSVS12_01299 PF01037 AsnC family VSVS12_01299 PF13412 Winged helix-turn-helix DNA-binding VSVS12_01300 PF13622 Thioesterase-like superfamily VSVS12_01301 PF09619 Type III secretion system lipoprotein chaperone (YscW) VSVS12_01302 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VSVS12_01304 PF00497 Bacterial extracellular solute-binding proteins, family 3 VSVS12_01304 PF00990 GGDEF domain VSVS12_01305 PF13306 Leucine rich repeats (6 copies) VSVS12_01306 PF13322 VSVS12_01306 VSVS12_01306 PF13402 Peptidase M60-like family VSVS12_01306 PF17291 VSVS12_01306 VSVS12_01307 PF00072 Response regulator receiver domain VSVS12_01308 PF00072 Response regulator receiver domain VSVS12_01308 PF00196 Bacterial regulatory proteins, luxR family VSVS12_01308 PF00563 EAL domain VSVS12_01309 PF00072 Response regulator receiver domain VSVS12_01309 PF00497 Bacterial extracellular solute-binding proteins, family 3 VSVS12_01309 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_01309 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_01310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_01310 PF03466 LysR substrate binding domain VSVS12_01311 PF00106 short chain dehydrogenase VSVS12_01312 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VSVS12_01313 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_01314 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_01314 PF12911 VSVS12_01314 VSVS12_01315 PF00005 ABC transporter VSVS12_01315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VSVS12_01316 PF00005 ABC transporter VSVS12_01316 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VSVS12_01317 PF13416 Bacterial extracellular solute-binding protein VSVS12_01318 PF00850 Histone deacetylase domain VSVS12_01319 PF13409 Glutathione S-transferase, N-terminal domain VSVS12_01319 PF13410 Glutathione S-transferase, C-terminal domain VSVS12_01320 PF07963 Prokaryotic N-terminal methylation motif VSVS12_01322 PF07963 Prokaryotic N-terminal methylation motif VSVS12_01324 PF13229 Right handed beta helix region VSVS12_01325 PF00440 Bacterial regulatory proteins, tetR family VSVS12_01326 PF16576 VSVS12_01326 VSVS12_01327 PF00873 AcrB/AcrD/AcrF family VSVS12_01328 PF00037 4Fe-4S binding domain VSVS12_01328 PF13187 4Fe-4S dicluster domain VSVS12_01329 PF02613 Nitrate reductase delta subunit VSVS12_01330 PF00384 Molybdopterin oxidoreductase VSVS12_01330 PF01568 Molydopterin dinucleotide binding domain VSVS12_01330 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VSVS12_01331 PF12800 4Fe-4S binding domain VSVS12_01331 PF13247 4Fe-4S dicluster domain VSVS12_01332 PF04976 VSVS12_01332 VSVS12_01333 PF11280 VSVS12_01333 VSVS12_01334 PF01515 Phosphate acetyl/butaryl transferase VSVS12_01334 PF07085 DRTGG domain VSVS12_01334 PF13500 AAA domain VSVS12_01335 PF00871 Acetokinase family VSVS12_01336 PF04217 VSVS12_01336 VSVS12_01337 PF01527 Transposase VSVS12_01338 PF13683 VSVS12_01338 VSVS12_01339 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VSVS12_01339 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VSVS12_01340 PF01037 AsnC family VSVS12_01340 PF13412 Winged helix-turn-helix DNA-binding VSVS12_01341 PF01580 FtsK/SpoIIIE family VSVS12_01341 PF09397 Ftsk gamma domain VSVS12_01341 PF13491 VSVS12_01341 VSVS12_01342 PF02600 Disulfide bond formation protein DsbB VSVS12_01343 PF06450 VSVS12_01343 VSVS12_01344 PF00392 Bacterial regulatory proteins, gntR family VSVS12_01344 PF07840 FadR C-terminal domain VSVS12_01345 PF00111 2Fe-2S iron-sulfur cluster binding domain VSVS12_01345 PF00175 Oxidoreductase NAD-binding domain VSVS12_01345 PF00970 Oxidoreductase FAD-binding domain VSVS12_01346 PF03063 Prismane/CO dehydrogenase family VSVS12_01347 PF00158 Sigma-54 interaction domain VSVS12_01348 PF09002 Domain of unknown function (DUF1887) VSVS12_01349 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_01349 PF12729 VSVS12_01349 VSVS12_01350 PF01230 HIT domain VSVS12_01352 PF07233 Protein of unknown function (DUF1425) VSVS12_01353 PF13036 Protein of unknown function (DUF3897) VSVS12_01354 PF01636 Phosphotransferase enzyme family VSVS12_01355 PF05728 Uncharacterised protein family (UPF0227) VSVS12_01356 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS12_01357 PF13302 Acetyltransferase (GNAT) domain VSVS12_01358 PF10972 VSVS12_01358 VSVS12_01359 PF00270 DEAD/DEAH box helicase VSVS12_01359 PF00271 Helicase conserved C-terminal domain VSVS12_01359 PF02559 CarD-like/TRCF domain VSVS12_01359 PF03461 TRCF domain VSVS12_01361 PF02687 VSVS12_01361 VSVS12_01361 PF12704 MacB-like periplasmic core domain VSVS12_01362 PF00005 ABC transporter VSVS12_01363 PF02687 VSVS12_01363 VSVS12_01363 PF12704 MacB-like periplasmic core domain VSVS12_01364 PF09835 VSVS12_01364 VSVS12_01365 PF00753 Metallo-beta-lactamase superfamily VSVS12_01365 PF03772 VSVS12_01365 VSVS12_01365 PF13567 VSVS12_01365 VSVS12_01366 PF00005 ABC transporter VSVS12_01366 PF00664 ABC transporter transmembrane region VSVS12_01367 PF02606 Tetraacyldisaccharide-1-P 4'-kinase VSVS12_01368 PF03966 Trm112p-like protein VSVS12_01369 PF02348 Cytidylyltransferase VSVS12_01370 PF04293 VSVS12_01370 VSVS12_01371 PF04285 VSVS12_01371 VSVS12_01372 PF06798 VSVS12_01372 VSVS12_01372 PF08298 PrkA AAA domain VSVS12_01373 PF06629 VSVS12_01373 VSVS12_01374 PF03887 YfbU domain VSVS12_01375 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family VSVS12_01376 PF04055 Radical SAM superfamily VSVS12_01376 PF13353 4Fe-4S single cluster domain VSVS12_01377 PF09982 Uncharacterized protein conserved in bacteria (DUF2219) VSVS12_01378 PF01228 Glycine radical VSVS12_01378 PF02901 Pyruvate formate lyase VSVS12_01379 PF11840 VSVS12_01379 VSVS12_01380 PF00005 ABC transporter VSVS12_01381 PF00497 Bacterial extracellular solute-binding proteins, family 3 VSVS12_01382 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_01383 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_01384 PF00072 Response regulator receiver domain VSVS12_01384 PF04397 LytTr DNA-binding domain VSVS12_01385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_01385 PF06580 VSVS12_01385 VSVS12_01387 PF17131 VSVS12_01387 VSVS12_01388 PF02687 VSVS12_01388 VSVS12_01388 PF12704 MacB-like periplasmic core domain VSVS12_01389 PF00005 ABC transporter VSVS12_01395 PF03352 Methyladenine glycosylase VSVS12_01396 PF01323 DSBA-like thioredoxin domain VSVS12_01398 PF00012 Hsp70 protein VSVS12_01398 PF12531 VSVS12_01398 VSVS12_01399 PF00012 Hsp70 protein VSVS12_01400 PF10816 VSVS12_01400 VSVS12_01401 PF00990 GGDEF domain VSVS12_01401 PF03924 CHASE domain VSVS12_01402 PF00929 Exonuclease VSVS12_01403 PF05099 Tellurite resistance protein TerB VSVS12_01406 PF06629 VSVS12_01406 VSVS12_01407 PF00270 DEAD/DEAH box helicase VSVS12_01407 PF00271 Helicase conserved C-terminal domain VSVS12_01407 PF04408 Helicase associated domain (HA2) VSVS12_01407 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VSVS12_01407 PF11898 VSVS12_01407 VSVS12_01408 PF13505 Outer membrane protein beta-barrel domain VSVS12_01409 PF06271 VSVS12_01409 VSVS12_01410 PF00375 Sodium:dicarboxylate symporter family VSVS12_01411 PF00290 Tryptophan synthase alpha chain VSVS12_01412 PF00291 Pyridoxal-phosphate dependent enzyme VSVS12_01413 PF00218 Indole-3-glycerol phosphate synthase VSVS12_01413 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VSVS12_01414 PF00591 Glycosyl transferase family, a/b domain VSVS12_01414 PF02885 Glycosyl transferase family, helical bundle domain VSVS12_01415 PF00117 Glutamine amidotransferase class-I VSVS12_01416 PF00425 chorismate binding enzyme VSVS12_01416 PF04715 Anthranilate synthase component I, N terminal region VSVS12_01417 PF02811 PHP domain VSVS12_01418 PF01300 Telomere recombination VSVS12_01419 PF00849 RNA pseudouridylate synthase VSVS12_01419 PF01479 S4 domain VSVS12_01420 PF00072 Response regulator receiver domain VSVS12_01420 PF00497 Bacterial extracellular solute-binding proteins, family 3 VSVS12_01420 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_01420 PF00989 PAS fold VSVS12_01420 PF01627 Hpt domain VSVS12_01420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_01421 PF00072 Response regulator receiver domain VSVS12_01421 PF13487 HD domain VSVS12_01422 PF00072 Response regulator receiver domain VSVS12_01422 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_01425 PF01327 Polypeptide deformylase VSVS12_01426 PF13414 TPR repeat VSVS12_01427 PF04664 VSVS12_01427 VSVS12_01428 PF01610 VSVS12_01428 VSVS12_01428 PF13542 VSVS12_01428 VSVS12_01430 PF11953 Domain of unknown function (DUF3470) VSVS12_01430 PF13187 4Fe-4S dicluster domain VSVS12_01431 PF00588 SpoU rRNA Methylase family VSVS12_01432 PF08014 VSVS12_01432 VSVS12_01434 PF01609 Transposase DDE domain VSVS12_01436 PF01609 Transposase DDE domain VSVS12_01438 PF12697 Alpha/beta hydrolase family VSVS12_01439 PF04307 VSVS12_01439 VSVS12_01441 PF01734 Patatin-like phospholipase VSVS12_01443 PF11840 VSVS12_01443 VSVS12_01444 PF00703 Glycosyl hydrolases family 2 VSVS12_01445 PF07007 Protein of unknown function (DUF1311) VSVS12_01447 PF12799 Leucine Rich repeats (2 copies) VSVS12_01447 PF12975 Domain of unknown function (DUF3859) VSVS12_01448 PF00075 RNase H VSVS12_01448 PF01693 Caulimovirus viroplasmin VSVS12_01450 PF11286 VSVS12_01450 VSVS12_01453 PF01609 Transposase DDE domain VSVS12_01455 PF00849 RNA pseudouridylate synthase VSVS12_01455 PF01479 S4 domain VSVS12_01456 PF13580 SIS domain VSVS12_01457 PF00367 phosphotransferase system, EIIB VSVS12_01457 PF02378 Phosphotransferase system, EIIC VSVS12_01458 PF01380 SIS domain VSVS12_01458 PF01418 Helix-turn-helix domain, rpiR family VSVS12_01459 PF02656 VSVS12_01459 VSVS12_01462 PF13306 Leucine rich repeats (6 copies) VSVS12_01463 PF10947 VSVS12_01463 VSVS12_01464 PF01609 Transposase DDE domain VSVS12_01465 PF00753 Metallo-beta-lactamase superfamily VSVS12_01465 PF14863 Alkyl sulfatase dimerisation VSVS12_01465 PF14864 Alkyl sulfatase C-terminal VSVS12_01467 PF01844 HNH endonuclease VSVS12_01469 PF04261 Dyp-type peroxidase family VSVS12_01471 PF07859 alpha/beta hydrolase fold VSVS12_01472 PF07690 Major Facilitator Superfamily VSVS12_01473 PF07055 Enoyl reductase FAD binding domain VSVS12_01473 PF12241 Trans-2-enoyl-CoA reductase catalytic region VSVS12_01473 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VSVS12_01474 PF01575 MaoC like domain VSVS12_01475 PF01144 Coenzyme A transferase VSVS12_01476 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_01476 PF03466 LysR substrate binding domain VSVS12_01477 PF13561 Enoyl-(Acyl carrier protein) reductase VSVS12_01478 PF00108 Thiolase, N-terminal domain VSVS12_01478 PF02803 Thiolase, C-terminal domain VSVS12_01479 PF00226 DnaJ domain VSVS12_01479 PF01556 DnaJ C terminal domain VSVS12_01480 PF00012 Hsp70 protein VSVS12_01481 PF00011 Hsp20/alpha crystallin family VSVS12_01482 PF01926 50S ribosome-binding GTPase VSVS12_01482 PF13167 VSVS12_01482 VSVS12_01482 PF16360 VSVS12_01482 VSVS12_01483 PF00873 AcrB/AcrD/AcrF family VSVS12_01484 PF13437 HlyD family secretion protein VSVS12_01484 PF13533 Biotin-lipoyl like VSVS12_01485 PF03773 VSVS12_01485 VSVS12_01486 PF13561 Enoyl-(Acyl carrier protein) reductase VSVS12_01487 PF01609 Transposase DDE domain VSVS12_01487 PF13006 VSVS12_01487 VSVS12_01488 PF07661 VSVS12_01488 VSVS12_01489 PF01048 Phosphorylase superfamily VSVS12_01491 PF00037 4Fe-4S binding domain VSVS12_01491 PF00384 Molybdopterin oxidoreductase VSVS12_01491 PF01568 Molydopterin dinucleotide binding domain VSVS12_01491 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VSVS12_01491 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS12_01491 PF13510 2Fe-2S iron-sulfur cluster binding domain VSVS12_01491 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VSVS12_01492 PF13302 Acetyltransferase (GNAT) domain VSVS12_01493 PF12833 Helix-turn-helix domain VSVS12_01495 PF06445 GyrI-like small molecule binding domain VSVS12_01495 PF12833 Helix-turn-helix domain VSVS12_01496 PF01425 Amidase VSVS12_01497 PF11059 VSVS12_01497 VSVS12_01498 PF12833 Helix-turn-helix domain VSVS12_01499 PF14600 Cellulose-binding domain VSVS12_01500 PF13649 Methyltransferase domain VSVS12_01501 PF01764 Lipase (class 3) VSVS12_01502 PF13175 AAA ATPase domain VSVS12_01505 PF00990 GGDEF domain VSVS12_01508 PF16548 VSVS12_01508 VSVS12_01513 PF01464 Transglycosylase SLT domain VSVS12_01514 PF02169 LPP20 lipoprotein VSVS12_01515 PF00581 Rhodanese-like domain VSVS12_01515 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VSVS12_01515 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS12_01520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_01520 PF12729 VSVS12_01520 VSVS12_01521 PF00704 Glycosyl hydrolases family 18 VSVS12_01521 PF02839 Carbohydrate binding domain VSVS12_01523 PF00892 EamA-like transporter family VSVS12_01524 PF07969 Amidohydrolase family VSVS12_01525 PF07007 Protein of unknown function (DUF1311) VSVS12_01526 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VSVS12_01527 PF00144 Beta-lactamase VSVS12_01528 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_01529 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VSVS12_01530 PF01810 VSVS12_01530 VSVS12_01531 PF01235 VSVS12_01531 VSVS12_01532 PF04320 VSVS12_01532 VSVS12_01536 PF00072 Response regulator receiver domain VSVS12_01537 PF00027 Cyclic nucleotide-binding domain VSVS12_01537 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_01537 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_01538 PF06097 VSVS12_01538 VSVS12_01539 PF00266 Aminotransferase class-V VSVS12_01540 PF04055 Radical SAM superfamily VSVS12_01540 PF08497 VSVS12_01540 VSVS12_01540 PF11842 VSVS12_01540 VSVS12_01543 PF14056 VSVS12_01543 VSVS12_01544 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_01544 PF03466 LysR substrate binding domain VSVS12_01545 PF01717 Cobalamin-independent synthase, Catalytic domain VSVS12_01545 PF08267 Cobalamin-independent synthase, N-terminal domain VSVS12_01546 PF02080 TrkA-C domain VSVS12_01546 PF06826 VSVS12_01546 VSVS12_01547 PF00462 Glutaredoxin VSVS12_01548 PF00465 Iron-containing alcohol dehydrogenase VSVS12_01549 PF01380 SIS domain VSVS12_01549 PF01418 Helix-turn-helix domain, rpiR family VSVS12_01550 PF00282 Pyridoxal-dependent decarboxylase conserved domain VSVS12_01552 PF03956 VSVS12_01552 VSVS12_01553 PF08668 HDOD domain VSVS12_01554 PF04993 TfoX N-terminal domain VSVS12_01555 PF01609 Transposase DDE domain VSVS12_01556 PF04993 TfoX N-terminal domain VSVS12_01556 PF04994 TfoX C-terminal domain VSVS12_01557 PF12614 VSVS12_01557 VSVS12_01558 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VSVS12_01560 PF00873 AcrB/AcrD/AcrF family VSVS12_01561 PF11604 Copper binding periplasmic protein CusF VSVS12_01561 PF16576 VSVS12_01561 VSVS12_01562 PF02321 Outer membrane efflux protein VSVS12_01564 PF01546 Peptidase family M20/M25/M40 VSVS12_01564 PF07687 Peptidase dimerisation domain VSVS12_01565 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VSVS12_01565 PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal VSVS12_01566 PF04209 homogentisate 1,2-dioxygenase VSVS12_01567 PF01557 Fumarylacetoacetate (FAA) hydrolase family VSVS12_01568 PF13417 Glutathione S-transferase, N-terminal domain VSVS12_01568 PF14497 Glutathione S-transferase, C-terminal domain VSVS12_01570 PF08238 Sel1 repeat VSVS12_01571 PF00691 OmpA family VSVS12_01571 PF13488 VSVS12_01571 VSVS12_01572 PF10979 VSVS12_01572 VSVS12_01573 PF11813 VSVS12_01573 VSVS12_01574 PF01565 FAD binding domain VSVS12_01574 PF02913 FAD linked oxidases, C-terminal domain VSVS12_01574 PF13183 4Fe-4S dicluster domain VSVS12_01575 PF04191 Phospholipid methyltransferase VSVS12_01576 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_01577 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_01578 PF00497 Bacterial extracellular solute-binding proteins, family 3 VSVS12_01579 PF00005 ABC transporter VSVS12_01580 PF12119 VSVS12_01580 VSVS12_01582 PF13505 Outer membrane protein beta-barrel domain VSVS12_01583 PF00221 Aromatic amino acid lyase VSVS12_01584 PF01175 Urocanase VSVS12_01584 PF17391 VSVS12_01584 VSVS12_01584 PF17392 VSVS12_01584 VSVS12_01585 PF00491 Arginase family VSVS12_01586 PF01979 Amidohydrolase family VSVS12_01587 PF00392 Bacterial regulatory proteins, gntR family VSVS12_01587 PF07702 UTRA domain VSVS12_01588 PF07070 VSVS12_01588 VSVS12_01589 PF11383 VSVS12_01589 VSVS12_01591 PF05724 Thiopurine S-methyltransferase (TPMT) VSVS12_01592 PF02222 ATP-grasp domain VSVS12_01593 PF00939 Sodium:sulfate symporter transmembrane region VSVS12_01594 PF00027 Cyclic nucleotide-binding domain VSVS12_01594 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_01595 PF00072 Response regulator receiver domain VSVS12_01596 PF11871 VSVS12_01596 VSVS12_01596 PF13487 HD domain VSVS12_01597 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VSVS12_01597 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region VSVS12_01598 PF04172 VSVS12_01598 VSVS12_01599 PF03788 VSVS12_01599 VSVS12_01600 PF00929 Exonuclease VSVS12_01600 PF08411 Exonuclease C-terminal VSVS12_01601 PF01042 Endoribonuclease L-PSP VSVS12_01602 PF00144 Beta-lactamase VSVS12_01603 PF08732 VSVS12_01603 VSVS12_01604 PF01613 Flavin reductase like domain VSVS12_01605 PF02277 Phosphoribosyltransferase VSVS12_01606 PF02654 VSVS12_01606 VSVS12_01607 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase VSVS12_01608 PF00300 Histidine phosphatase superfamily (branch 1) VSVS12_01609 PF01432 Peptidase family M3 VSVS12_01609 PF08439 Oligopeptidase F VSVS12_01610 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VSVS12_01611 PF01032 FecCD transport family VSVS12_01612 PF00005 ABC transporter VSVS12_01613 PF13302 Acetyltransferase (GNAT) domain VSVS12_01614 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VSVS12_01615 PF07209 VSVS12_01615 VSVS12_01616 PF07690 Major Facilitator Superfamily VSVS12_01617 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_01617 PF03466 LysR substrate binding domain VSVS12_01618 PF01566 VSVS12_01618 VSVS12_01619 PF00491 Arginase family VSVS12_01620 PF00462 Glutaredoxin VSVS12_01621 PF01863 Protein of unknown function DUF45 VSVS12_01622 PF05971 Protein of unknown function (DUF890) VSVS12_01624 PF07719 Tetratricopeptide repeat VSVS12_01624 PF13181 Tetratricopeptide repeat VSVS12_01624 PF13431 Tetratricopeptide repeat VSVS12_01625 PF04204 Homoserine O-succinyltransferase VSVS12_01626 PF13671 AAA domain VSVS12_01627 PF12698 ABC-2 family transporter protein VSVS12_01628 PF12698 ABC-2 family transporter protein VSVS12_01629 PF13437 HlyD family secretion protein VSVS12_01629 PF13533 Biotin-lipoyl like VSVS12_01630 PF02321 Outer membrane efflux protein VSVS12_01631 PF00497 Bacterial extracellular solute-binding proteins, family 3 VSVS12_01631 PF13487 HD domain VSVS12_01632 PF00583 Acetyltransferase (GNAT) family VSVS12_01633 PF00293 NUDIX domain VSVS12_01634 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_01634 PF00672 HAMP domain VSVS12_01635 PF13394 4Fe-4S single cluster domain VSVS12_01636 PF06508 Queuosine biosynthesis protein QueC VSVS12_01637 PF00990 GGDEF domain VSVS12_01637 PF13181 Tetratricopeptide repeat VSVS12_01638 PF11042 VSVS12_01638 VSVS12_01639 PF00691 OmpA family VSVS12_01640 PF02321 Outer membrane efflux protein VSVS12_01641 PF08548 Peptidase M10 serralysin C terminal VSVS12_01643 PF10672 S-adenosylmethionine-dependent methyltransferase VSVS12_01644 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_01645 PF00708 Acylphosphatase VSVS12_01646 PF04358 DsrC like protein VSVS12_01647 PF01027 Inhibitor of apoptosis-promoting Bax1 VSVS12_01648 PF00005 ABC transporter VSVS12_01649 PF00005 ABC transporter VSVS12_01650 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_01651 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_01652 PF00497 Bacterial extracellular solute-binding proteins, family 3 VSVS12_01653 PF10414 Sirohaem synthase dimerisation region VSVS12_01653 PF13241 Putative NAD(P)-binding VSVS12_01653 PF14824 Sirohaem biosynthesis protein central VSVS12_01654 PF04461 Protein of unknown function (DUF520) VSVS12_01655 PF00793 DAHP synthetase I family VSVS12_01656 PF14539 Domain of unknown function (DUF4442) VSVS12_01658 PF13509 S1 domain VSVS12_01659 PF01189 NOL1/NOP2/sun family VSVS12_01659 PF13636 pre-rRNA processing and ribosome biogenesis VSVS12_01659 PF17125 VSVS12_01659 VSVS12_01660 PF02470 VSVS12_01660 VSVS12_01661 PF04403 VSVS12_01661 VSVS12_01662 PF00005 ABC transporter VSVS12_01662 PF00664 ABC transporter transmembrane region VSVS12_01663 PF13185 GAF domain VSVS12_01664 PF04352 ProQ/FINO family VSVS12_01664 PF17516 VSVS12_01664 VSVS12_01665 PF00595 PDZ domain (Also known as DHR or GLGF) VSVS12_01665 PF03572 Peptidase family S41 VSVS12_01665 PF11818 VSVS12_01665 VSVS12_01667 PF01433 Peptidase family M1 VSVS12_01667 PF11940 Domain of unknown function (DUF3458) VSVS12_01667 PF17432 VSVS12_01667 VSVS12_01668 PF11197 VSVS12_01668 VSVS12_01669 PF05088 VSVS12_01669 VSVS12_01670 PF01180 Dihydroorotate dehydrogenase VSVS12_01671 PF07126 VSVS12_01671 VSVS12_01672 PF01170 Putative RNA methylase family UPF0020 VSVS12_01672 PF02926 THUMP domain VSVS12_01672 PF10672 S-adenosylmethionine-dependent methyltransferase VSVS12_01673 PF05768 Glutaredoxin-like domain (DUF836) VSVS12_01674 PF00005 ABC transporter VSVS12_01674 PF12848 ABC transporter VSVS12_01674 PF16326 VSVS12_01674 VSVS12_01675 PF11949 VSVS12_01675 VSVS12_01676 PF04957 Ribosome modulation factor VSVS12_01677 PF07977 FabA-like domain VSVS12_01678 PF05362 Lon protease (S16) C-terminal proteolytic domain VSVS12_01678 PF13654 AAA domain VSVS12_01679 PF06303 Organiser of macrodomain of Terminus of chromosome VSVS12_01679 PF17414 VSVS12_01679 VSVS12_01680 PF12321 VSVS12_01680 VSVS12_01682 PF00115 Cytochrome C and Quinol oxidase polypeptide I VSVS12_01683 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO VSVS12_01684 PF05545 VSVS12_01684 VSVS12_01685 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VSVS12_01685 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP VSVS12_01686 PF05751 VSVS12_01686 VSVS12_01687 PF00122 E1-E2 ATPase VSVS12_01687 PF00403 Heavy-metal-associated domain VSVS12_01687 PF00702 haloacid dehalogenase-like hydrolase VSVS12_01687 PF12156 VSVS12_01687 VSVS12_01688 PF03597 VSVS12_01688 VSVS12_01689 PF13386 VSVS12_01689 VSVS12_01690 PF00027 Cyclic nucleotide-binding domain VSVS12_01690 PF13545 Crp-like helix-turn-helix domain VSVS12_01691 PF00582 Universal stress protein family VSVS12_01692 PF01171 PP-loop family VSVS12_01693 PF11205 VSVS12_01693 VSVS12_01694 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VSVS12_01696 PF00005 ABC transporter VSVS12_01696 PF08402 TOBE domain VSVS12_01697 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_01698 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_01699 PF13416 Bacterial extracellular solute-binding protein VSVS12_01700 PF13416 Bacterial extracellular solute-binding protein VSVS12_01701 PF02146 Sir2 family VSVS12_01702 PF00909 Ammonium Transporter Family VSVS12_01704 PF01292 Prokaryotic cytochrome b561 VSVS12_01705 PF13247 4Fe-4S dicluster domain VSVS12_01706 PF00384 Molybdopterin oxidoreductase VSVS12_01706 PF01568 Molydopterin dinucleotide binding domain VSVS12_01706 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VSVS12_01707 PF10518 TAT (twin-arginine translocation) pathway signal sequence VSVS12_01708 PF02613 Nitrate reductase delta subunit VSVS12_01709 PF00037 4Fe-4S binding domain VSVS12_01709 PF12838 4Fe-4S dicluster domain VSVS12_01710 PF11748 VSVS12_01710 VSVS12_01711 PF11749 VSVS12_01711 VSVS12_01712 PF02634 FdhD/NarQ family VSVS12_01713 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_01713 PF00672 HAMP domain VSVS12_01714 PF00005 ABC transporter VSVS12_01714 PF12848 ABC transporter VSVS12_01715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_01715 PF03466 LysR substrate binding domain VSVS12_01716 PF08240 Alcohol dehydrogenase GroES-like domain VSVS12_01716 PF13602 Zinc-binding dehydrogenase VSVS12_01717 PF13401 AAA domain VSVS12_01718 PF00924 Mechanosensitive ion channel VSVS12_01719 PF10462 Peptidase M66 VSVS12_01720 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_01720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_01720 PF17202 VSVS12_01720 VSVS12_01721 PF00072 Response regulator receiver domain VSVS12_01721 PF00158 Sigma-54 interaction domain VSVS12_01721 PF02954 Bacterial regulatory protein, Fis family VSVS12_01722 PF12849 PBP superfamily domain VSVS12_01723 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_01724 PF00005 ABC transporter VSVS12_01725 PF12804 MobA-like NTP transferase domain VSVS12_01726 PF00994 Probable molybdopterin binding domain VSVS12_01726 PF03205 Molybdopterin guanine dinucleotide synthesis protein B VSVS12_01726 PF03453 MoeA N-terminal region (domain I and II) VSVS12_01726 PF03454 MoeA C-terminal region (domain IV) VSVS12_01727 PF11173 VSVS12_01727 VSVS12_01728 PF00480 ROK family VSVS12_01729 PF03942 VSVS12_01729 VSVS12_01730 PF04116 VSVS12_01730 VSVS12_01731 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_01732 PF00877 NlpC/P60 family VSVS12_01733 PF12290 VSVS12_01733 VSVS12_01734 PF03881 Fructosamine kinase VSVS12_01735 PF14255 VSVS12_01735 VSVS12_01736 PF00677 Lumazine binding domain VSVS12_01737 PF01554 MatE VSVS12_01738 PF11279 VSVS12_01738 VSVS12_01742 PF01810 VSVS12_01742 VSVS12_01744 PF02631 RecX family VSVS12_01746 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VSVS12_01747 PF00709 Adenylosuccinate synthetase VSVS12_01748 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_01748 PF03466 LysR substrate binding domain VSVS12_01749 PF00368 Hydroxymethylglutaryl-coenzyme A reductase VSVS12_01750 PF03372 Endonuclease/Exonuclease/phosphatase family VSVS12_01752 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase VSVS12_01753 PF04055 Radical SAM superfamily VSVS12_01754 PF00378 Enoyl-CoA hydratase/isomerase family VSVS12_01755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_01755 PF03466 LysR substrate binding domain VSVS12_01757 PF08713 DNA alkylation repair enzyme VSVS12_01758 PF01610 VSVS12_01758 VSVS12_01758 PF13542 VSVS12_01758 VSVS12_01759 PF05359 VSVS12_01759 VSVS12_01760 PF01609 Transposase DDE domain VSVS12_01761 PF05359 VSVS12_01761 VSVS12_01762 PF00367 phosphotransferase system, EIIB VSVS12_01762 PF02378 Phosphotransferase system, EIIC VSVS12_01763 PF13580 SIS domain VSVS12_01764 PF01380 SIS domain VSVS12_01764 PF01418 Helix-turn-helix domain, rpiR family VSVS12_01765 PF01068 ATP dependent DNA ligase domain VSVS12_01765 PF14743 DNA ligase OB-like domain VSVS12_01766 PF13466 STAS domain VSVS12_01767 PF00691 OmpA family VSVS12_01768 PF02563 Polysaccharide biosynthesis/export protein VSVS12_01768 PF10531 SLBB domain VSVS12_01769 PF10531 SLBB domain VSVS12_01771 PF00072 Response regulator receiver domain VSVS12_01771 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_01771 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_01772 PF00072 Response regulator receiver domain VSVS12_01772 PF00158 Sigma-54 interaction domain VSVS12_01772 PF02954 Bacterial regulatory protein, Fis family VSVS12_01773 PF13579 Glycosyl transferase 4-like domain VSVS12_01773 PF13692 Glycosyl transferases group 1 VSVS12_01774 PF00534 Glycosyl transferases group 1 VSVS12_01774 PF13439 Glycosyltransferase Family 4 VSVS12_01775 PF00534 Glycosyl transferases group 1 VSVS12_01776 PF13440 VSVS12_01776 VSVS12_01777 PF04932 VSVS12_01777 VSVS12_01778 PF00132 Bacterial transferase hexapeptide (six repeats) VSVS12_01780 PF01609 Transposase DDE domain VSVS12_01782 PF02706 Chain length determinant protein VSVS12_01782 PF13807 VSVS12_01782 VSVS12_01783 PF00534 Glycosyl transferases group 1 VSVS12_01783 PF13439 Glycosyltransferase Family 4 VSVS12_01784 PF13641 Glycosyltransferase like family 2 VSVS12_01785 PF02397 VSVS12_01785 VSVS12_01787 PF00990 GGDEF domain VSVS12_01788 PF00076 RNA recognition motif VSVS12_01789 PF00480 ROK family VSVS12_01790 PF00563 EAL domain VSVS12_01790 PF00990 GGDEF domain VSVS12_01790 PF08269 Cache domain VSVS12_01791 PF01609 Transposase DDE domain VSVS12_01792 PF13440 VSVS12_01792 VSVS12_01792 PF14667 Polysaccharide biosynthesis C-terminal domain VSVS12_01793 PF00990 GGDEF domain VSVS12_01794 PF10881 VSVS12_01794 VSVS12_01795 PF00005 ABC transporter VSVS12_01796 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_01797 PF00497 Bacterial extracellular solute-binding proteins, family 3 VSVS12_01798 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_01800 PF03544 Gram-negative bacterial TonB protein C-terminal VSVS12_01801 PF02472 Biopolymer transport protein ExbD/TolR VSVS12_01802 PF01618 VSVS12_01802 VSVS12_01803 PF01618 VSVS12_01803 VSVS12_01804 PF11932 VSVS12_01804 VSVS12_01805 PF00593 TonB dependent receptor VSVS12_01805 PF07715 TonB-dependent Receptor Plug Domain VSVS12_01806 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_01806 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_01806 PF16750 VSVS12_01806 VSVS12_01807 PF00072 Response regulator receiver domain VSVS12_01807 PF00486 Transcriptional regulatory protein, C terminal VSVS12_01808 PF06808 VSVS12_01808 VSVS12_01808 PF11874 VSVS12_01808 VSVS12_01809 PF16868 VSVS12_01809 VSVS12_01810 PF03009 Glycerophosphoryl diester phosphodiesterase family VSVS12_01811 PF03846 Cell division inhibitor SulA VSVS12_01812 PF01259 SAICAR synthetase VSVS12_01813 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_01813 PF03466 LysR substrate binding domain VSVS12_01814 PF04055 Radical SAM superfamily VSVS12_01814 PF13353 4Fe-4S single cluster domain VSVS12_01815 PF11230 VSVS12_01815 VSVS12_01816 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_01816 PF00672 HAMP domain VSVS12_01816 PF02743 Cache domain VSVS12_01818 PF01810 VSVS12_01818 VSVS12_01819 PF00521 DNA gyrase/topoisomerase IV, subunit A VSVS12_01819 PF03989 DNA gyrase C-terminal domain, beta-propeller VSVS12_01820 PF13489 Methyltransferase domain VSVS12_01821 PF00317 Ribonucleotide reductase, all-alpha domain VSVS12_01821 PF02867 Ribonucleotide reductase, barrel domain VSVS12_01821 PF03477 ATP cone domain VSVS12_01822 PF00268 Ribonucleotide reductase, small chain VSVS12_01823 PF00111 2Fe-2S iron-sulfur cluster binding domain VSVS12_01825 PF00994 Probable molybdopterin binding domain VSVS12_01826 PF13084 VSVS12_01826 VSVS12_01827 PF13740 ACT domain VSVS12_01829 PF03435 Saccharopine dehydrogenase VSVS12_01829 PF16653 VSVS12_01829 VSVS12_01830 PF00202 Aminotransferase class-III VSVS12_01830 PF00282 Pyridoxal-dependent decarboxylase conserved domain VSVS12_01831 PF02321 Outer membrane efflux protein VSVS12_01832 PF00691 OmpA family VSVS12_01833 PF06965 Na+/H+ antiporter 1 VSVS12_01834 PF07143 Hydroxyneurosporene synthase (CrtC) VSVS12_01834 PF17186 VSVS12_01834 VSVS12_01835 PF02687 VSVS12_01835 VSVS12_01835 PF12704 MacB-like periplasmic core domain VSVS12_01836 PF00005 ABC transporter VSVS12_01837 PF01554 MatE VSVS12_01838 PF11066 VSVS12_01838 VSVS12_01838 PF13460 NADH(P)-binding VSVS12_01839 PF00563 EAL domain VSVS12_01840 PF01235 VSVS12_01840 VSVS12_01841 PF01609 Transposase DDE domain VSVS12_01843 PF00043 Glutathione S-transferase, C-terminal domain VSVS12_01843 PF13417 Glutathione S-transferase, N-terminal domain VSVS12_01845 PF01609 Transposase DDE domain VSVS12_01847 PF11140 VSVS12_01847 VSVS12_01848 PF07690 Major Facilitator Superfamily VSVS12_01849 PF00849 RNA pseudouridylate synthase VSVS12_01849 PF01479 S4 domain VSVS12_01850 PF00271 Helicase conserved C-terminal domain VSVS12_01850 PF04851 Type III restriction enzyme, res subunit VSVS12_01852 PF00072 Response regulator receiver domain VSVS12_01852 PF00486 Transcriptional regulatory protein, C terminal VSVS12_01853 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_01854 PF07690 Major Facilitator Superfamily VSVS12_01855 PF12833 Helix-turn-helix domain VSVS12_01856 PF09335 VSVS12_01856 VSVS12_01856 PF14067 VSVS12_01856 VSVS12_01857 PF00535 Glycosyl transferase family 2 VSVS12_01858 PF01386 Ribosomal L25p family VSVS12_01859 PF07238 PilZ domain VSVS12_01860 PF00892 EamA-like transporter family VSVS12_01862 PF00665 Integrase core domain VSVS12_01864 PF00563 EAL domain VSVS12_01864 PF00990 GGDEF domain VSVS12_01866 PF00210 Ferritin-like domain VSVS12_01867 PF08883 Dopa 4,5-dioxygenase family VSVS12_01868 PF00356 Bacterial regulatory proteins, lacI family VSVS12_01868 PF13377 Periplasmic binding protein-like domain VSVS12_01869 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VSVS12_01870 PF02378 Phosphotransferase system, EIIC VSVS12_01871 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit VSVS12_01873 PF00072 Response regulator receiver domain VSVS12_01873 PF00196 Bacterial regulatory proteins, luxR family VSVS12_01874 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_01874 PF07730 Histidine kinase VSVS12_01874 PF17200 VSVS12_01874 VSVS12_01875 PF06808 VSVS12_01875 VSVS12_01876 PF04290 VSVS12_01876 VSVS12_01877 PF03480 Bacterial extracellular solute-binding protein, family 7 VSVS12_01879 PF11201 VSVS12_01879 VSVS12_01880 PF00753 Metallo-beta-lactamase superfamily VSVS12_01881 PF05951 VSVS12_01881 VSVS12_01882 PF01471 Putative peptidoglycan binding domain VSVS12_01882 PF03734 L,D-transpeptidase catalytic domain VSVS12_01883 PF07433 VSVS12_01883 VSVS12_01884 PF09375 Imelysin VSVS12_01885 PF06537 VSVS12_01885 VSVS12_01886 PF09375 Imelysin VSVS12_01887 PF00925 GTP cyclohydrolase II VSVS12_01889 PF11163 VSVS12_01889 VSVS12_01890 PF13023 HD domain VSVS12_01891 PF13302 Acetyltransferase (GNAT) domain VSVS12_01892 PF00158 Sigma-54 interaction domain VSVS12_01892 PF13188 PAS domain VSVS12_01893 PF05128 VSVS12_01893 VSVS12_01894 PF04317 VSVS12_01894 VSVS12_01896 PF05681 VSVS12_01896 VSVS12_01896 PF05683 Fumarase C-terminus VSVS12_01897 PF00425 chorismate binding enzyme VSVS12_01897 PF04715 Anthranilate synthase component I, N terminal region VSVS12_01898 PF00072 Response regulator receiver domain VSVS12_01898 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_01898 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_01899 PF07700 Heme NO binding VSVS12_01900 PF00293 NUDIX domain VSVS12_01901 PF03222 Tryptophan/tyrosine permease family VSVS12_01902 PF03313 VSVS12_01902 VSVS12_01902 PF03315 Serine dehydratase beta chain VSVS12_01903 PF00583 Acetyltransferase (GNAT) family VSVS12_01904 PF01242 6-pyruvoyl tetrahydropterin synthase VSVS12_01905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_01906 PF07714 Protein tyrosine kinase VSVS12_01906 PF13855 Leucine rich repeat VSVS12_01907 PF00152 tRNA synthetases class II (D, K and N) VSVS12_01907 PF01336 OB-fold nucleic acid binding domain VSVS12_01908 PF01610 VSVS12_01908 VSVS12_01908 PF13542 VSVS12_01908 VSVS12_01911 PF00092 von Willebrand factor type A domain VSVS12_01912 PF01609 Transposase DDE domain VSVS12_01914 PF00155 Aminotransferase class I and II VSVS12_01915 PF13505 Outer membrane protein beta-barrel domain VSVS12_01917 PF00271 Helicase conserved C-terminal domain VSVS12_01917 PF04408 Helicase associated domain (HA2) VSVS12_01918 PF00270 DEAD/DEAH box helicase VSVS12_01919 PF00390 Malic enzyme, N-terminal domain VSVS12_01919 PF03949 Malic enzyme, NAD binding domain VSVS12_01920 PF11872 VSVS12_01920 VSVS12_01921 PF02698 DUF218 domain VSVS12_01922 PF00990 GGDEF domain VSVS12_01923 PF10977 VSVS12_01923 VSVS12_01924 PF00266 Aminotransferase class-V VSVS12_01925 PF10014 2OG-Fe dioxygenase VSVS12_01926 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS12_01927 PF00005 ABC transporter VSVS12_01927 PF00664 ABC transporter transmembrane region VSVS12_01928 PF00005 ABC transporter VSVS12_01930 PF00557 Metallopeptidase family M24 VSVS12_01930 PF01321 Creatinase/Prolidase N-terminal domain VSVS12_01931 PF01037 AsnC family VSVS12_01931 PF13412 Winged helix-turn-helix DNA-binding VSVS12_01932 PF00171 Aldehyde dehydrogenase family VSVS12_01933 PF00202 Aminotransferase class-III VSVS12_01934 PF01625 Peptide methionine sulfoxide reductase VSVS12_01935 PF13515 VSVS12_01935 VSVS12_01936 PF02525 Flavodoxin-like fold VSVS12_01937 PF01625 Peptide methionine sulfoxide reductase VSVS12_01938 PF01292 Prokaryotic cytochrome b561 VSVS12_01939 PF00270 DEAD/DEAH box helicase VSVS12_01939 PF00271 Helicase conserved C-terminal domain VSVS12_01942 PF00060 Ligand-gated ion channel VSVS12_01942 PF00497 Bacterial extracellular solute-binding proteins, family 3 VSVS12_01944 PF14317 VSVS12_01944 VSVS12_01947 PF00440 Bacterial regulatory proteins, tetR family VSVS12_01948 PF00583 Acetyltransferase (GNAT) family VSVS12_01949 PF13306 Leucine rich repeats (6 copies) VSVS12_01950 PF01609 Transposase DDE domain VSVS12_01952 PF00665 Integrase core domain VSVS12_01954 PF01609 Transposase DDE domain VSVS12_01956 PF13673 Acetyltransferase (GNAT) domain VSVS12_01959 PF11335 VSVS12_01959 VSVS12_01960 PF04011 LemA family VSVS12_01964 PF12525 VSVS12_01964 VSVS12_01966 PF02028 BCCT family transporter VSVS12_01967 PF01244 Membrane dipeptidase (Peptidase family M19) VSVS12_01968 PF00171 Aldehyde dehydrogenase family VSVS12_01969 PF01042 Endoribonuclease L-PSP VSVS12_01970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_01970 PF03466 LysR substrate binding domain VSVS12_01971 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family VSVS12_01972 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_01972 PF03466 LysR substrate binding domain VSVS12_01973 PF00270 DEAD/DEAH box helicase VSVS12_01973 PF00271 Helicase conserved C-terminal domain VSVS12_01975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_01976 PF10807 VSVS12_01976 VSVS12_01977 PF00581 Rhodanese-like domain VSVS12_01978 PF04224 VSVS12_01978 VSVS12_01979 PF00375 Sodium:dicarboxylate symporter family VSVS12_01980 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS12_01981 PF03729 VSVS12_01981 VSVS12_01982 PF04134 VSVS12_01982 VSVS12_01983 PF00392 Bacterial regulatory proteins, gntR family VSVS12_01983 PF07702 UTRA domain VSVS12_01984 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_01984 PF08376 Nitrate and nitrite sensing VSVS12_01985 PF00132 Bacterial transferase hexapeptide (six repeats) VSVS12_01985 PF12464 Maltose acetyltransferase VSVS12_01986 PF13302 Acetyltransferase (GNAT) domain VSVS12_01988 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_01988 PF03466 LysR substrate binding domain VSVS12_01989 PF01554 MatE VSVS12_01991 PF01609 Transposase DDE domain VSVS12_01994 PF01588 Putative tRNA binding domain VSVS12_01994 PF03147 Ferredoxin-fold anticodon binding domain VSVS12_01994 PF03483 B3/4 domain VSVS12_01994 PF03484 tRNA synthetase B5 domain VSVS12_01995 PF01409 tRNA synthetases class II core domain (F) VSVS12_01995 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VSVS12_01997 PF00583 Acetyltransferase (GNAT) family VSVS12_01998 PF00990 GGDEF domain VSVS12_01998 PF01814 Hemerythrin HHE cation binding domain VSVS12_02000 PF17131 VSVS12_02000 VSVS12_02001 PF03176 MMPL family VSVS12_02002 PF00440 Bacterial regulatory proteins, tetR family VSVS12_02003 PF00990 GGDEF domain VSVS12_02009 PF01066 CDP-alcohol phosphatidyltransferase VSVS12_02010 PF01541 GIY-YIG catalytic domain VSVS12_02010 PF02151 UvrB/uvrC motif VSVS12_02010 PF08459 UvrC Helix-hairpin-helix N-terminal VSVS12_02010 PF14520 Helix-hairpin-helix domain VSVS12_02011 PF00072 Response regulator receiver domain VSVS12_02011 PF00196 Bacterial regulatory proteins, luxR family VSVS12_02012 PF11220 VSVS12_02012 VSVS12_02013 PF13387 VSVS12_02013 VSVS12_02014 PF00136 DNA polymerase family B VSVS12_02014 PF03104 DNA polymerase family B, exonuclease domain VSVS12_02015 PF00563 EAL domain VSVS12_02015 PF02378 Phosphotransferase system, EIIC VSVS12_02016 PF01909 Nucleotidyltransferase domain VSVS12_02017 PF01132 Elongation factor P (EF-P) OB domain VSVS12_02017 PF08207 Elongation factor P (EF-P) KOW-like domain VSVS12_02017 PF09285 Elongation factor P, C-terminal VSVS12_02018 PF04269 Protein of unknown function, DUF440 VSVS12_02019 PF00216 Bacterial DNA-binding protein VSVS12_02020 PF00072 Response regulator receiver domain VSVS12_02020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_02022 PF04279 VSVS12_02022 VSVS12_02023 PF03061 Thioesterase superfamily VSVS12_02024 PF03795 YCII-related domain VSVS12_02025 PF16549 VSVS12_02025 VSVS12_02028 PF06945 VSVS12_02028 VSVS12_02029 PF03724 META domain VSVS12_02030 PF13416 Bacterial extracellular solute-binding protein VSVS12_02032 PF00005 ABC transporter VSVS12_02033 PF01066 CDP-alcohol phosphatidyltransferase VSVS12_02035 PF10672 S-adenosylmethionine-dependent methyltransferase VSVS12_02036 PF00849 RNA pseudouridylate synthase VSVS12_02037 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_02037 PF00672 HAMP domain VSVS12_02038 PF00209 Sodium:neurotransmitter symporter family VSVS12_02039 PF13091 PLD-like domain VSVS12_02039 PF13396 VSVS12_02039 VSVS12_02040 PF01053 Cys/Met metabolism PLP-dependent enzyme VSVS12_02041 PF01053 Cys/Met metabolism PLP-dependent enzyme VSVS12_02042 PF03352 Methyladenine glycosylase VSVS12_02043 PF00873 AcrB/AcrD/AcrF family VSVS12_02044 PF16576 VSVS12_02044 VSVS12_02045 PF13437 HlyD family secretion protein VSVS12_02045 PF13533 Biotin-lipoyl like VSVS12_02046 PF04024 VSVS12_02046 VSVS12_02047 PF06667 VSVS12_02047 VSVS12_02048 PF04012 VSVS12_02048 VSVS12_02049 PF00158 Sigma-54 interaction domain VSVS12_02049 PF02954 Bacterial regulatory protein, Fis family VSVS12_02050 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VSVS12_02051 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_02052 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_02052 PF12911 VSVS12_02052 VSVS12_02053 PF00005 ABC transporter VSVS12_02053 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VSVS12_02054 PF00005 ABC transporter VSVS12_02055 PF01368 DHH family VSVS12_02055 PF02833 DHHA2 domain VSVS12_02056 PF11449 VSVS12_02056 VSVS12_02057 PF01502 Phosphoribosyl-AMP cyclohydrolase VSVS12_02057 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VSVS12_02058 PF00977 Histidine biosynthesis protein VSVS12_02059 PF00977 Histidine biosynthesis protein VSVS12_02060 PF00117 Glutamine amidotransferase class-I VSVS12_02061 PF00475 Imidazoleglycerol-phosphate dehydratase VSVS12_02061 PF08645 Polynucleotide kinase 3 phosphatase VSVS12_02062 PF00155 Aminotransferase class I and II VSVS12_02063 PF00815 Histidinol dehydrogenase VSVS12_02064 PF01634 ATP phosphoribosyltransferase VSVS12_02064 PF08029 HisG, C-terminal domain VSVS12_02065 PF03553 VSVS12_02065 VSVS12_02066 PF00816 H-NS histone family VSVS12_02067 PF00294 pfkB family carbohydrate kinase VSVS12_02069 PF03054 tRNA methyl transferase VSVS12_02070 PF04356 Protein of unknown function (DUF489) VSVS12_02071 PF00206 Lyase VSVS12_02071 PF08328 Adenylosuccinate lyase C-terminal VSVS12_02072 PF12915 VSVS12_02072 VSVS12_02073 PF16036 VSVS12_02073 VSVS12_02074 PF11086 VSVS12_02074 VSVS12_02075 PF02353 Mycolic acid cyclopropane synthetase VSVS12_02076 PF07103 VSVS12_02076 VSVS12_02077 PF01593 Flavin containing amine oxidoreductase VSVS12_02078 PF00106 short chain dehydrogenase VSVS12_02079 PF12680 SnoaL-like domain VSVS12_02080 PF01435 Peptidase family M48 VSVS12_02082 PF13500 AAA domain VSVS12_02083 PF08241 Methyltransferase domain VSVS12_02084 PF00155 Aminotransferase class I and II VSVS12_02085 PF04055 Radical SAM superfamily VSVS12_02085 PF06968 Biotin and Thiamin Synthesis associated domain VSVS12_02086 PF00202 Aminotransferase class-III VSVS12_02087 PF09829 VSVS12_02087 VSVS12_02088 PF13609 Gram-negative porin VSVS12_02089 PF06733 DEAD_2 VSVS12_02089 PF13307 Helicase C-terminal domain VSVS12_02090 PF01925 VSVS12_02090 VSVS12_02091 PF07445 Primosomal replication protein priB and priC VSVS12_02092 PF10689 VSVS12_02092 VSVS12_02093 PF08007 Cupin superfamily protein VSVS12_02094 PF03372 Endonuclease/Exonuclease/phosphatase family VSVS12_02095 PF00005 ABC transporter VSVS12_02095 PF00664 ABC transporter transmembrane region VSVS12_02096 PF13437 HlyD family secretion protein VSVS12_02096 PF13533 Biotin-lipoyl like VSVS12_02097 PF00353 Hemolysin-type calcium-binding repeat (2 copies) VSVS12_02098 PF07055 Enoyl reductase FAD binding domain VSVS12_02098 PF12241 Trans-2-enoyl-CoA reductase catalytic region VSVS12_02098 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VSVS12_02099 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VSVS12_02099 PF02770 Acyl-CoA dehydrogenase, middle domain VSVS12_02099 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VSVS12_02099 PF09317 VSVS12_02099 VSVS12_02100 PF00440 Bacterial regulatory proteins, tetR family VSVS12_02101 PF04138 VSVS12_02101 VSVS12_02102 PF02366 VSVS12_02102 VSVS12_02103 PF00535 Glycosyl transferase family 2 VSVS12_02104 PF00072 Response regulator receiver domain VSVS12_02104 PF00486 Transcriptional regulatory protein, C terminal VSVS12_02105 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_02105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_02107 PF07383 VSVS12_02107 VSVS12_02108 PF03150 Di-haem cytochrome c peroxidase VSVS12_02109 PF00072 Response regulator receiver domain VSVS12_02109 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_02109 PF01627 Hpt domain VSVS12_02109 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_02111 PF01979 Amidohydrolase family VSVS12_02112 PF10063 VSVS12_02112 VSVS12_02115 PF13421 VSVS12_02115 VSVS12_02115 PF14237 VSVS12_02115 VSVS12_02116 PF13992 VSVS12_02116 VSVS12_02119 PF03544 Gram-negative bacterial TonB protein C-terminal VSVS12_02120 PF02472 Biopolymer transport protein ExbD/TolR VSVS12_02121 PF01618 VSVS12_02121 VSVS12_02122 PF01618 VSVS12_02122 VSVS12_02123 PF11932 VSVS12_02123 VSVS12_02124 PF07715 TonB-dependent Receptor Plug Domain VSVS12_02125 PF00005 ABC transporter VSVS12_02125 PF06472 VSVS12_02125 VSVS12_02126 PF00675 Insulinase (Peptidase family M16) VSVS12_02126 PF05193 Peptidase M16 inactive domain VSVS12_02127 PF00294 pfkB family carbohydrate kinase VSVS12_02128 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin VSVS12_02129 PF03747 ADP-ribosylglycohydrolase VSVS12_02130 PF00392 Bacterial regulatory proteins, gntR family VSVS12_02130 PF07702 UTRA domain VSVS12_02131 PF13391 VSVS12_02131 VSVS12_02132 PF13489 Methyltransferase domain VSVS12_02134 PF06610 VSVS12_02134 VSVS12_02135 PF00072 Response regulator receiver domain VSVS12_02135 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_02135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_02136 PF03695 Uncharacterised protein family (UPF0149) VSVS12_02137 PF07885 Ion channel VSVS12_02138 PF02445 Quinolinate synthetase A protein VSVS12_02139 PF13174 Tetratricopeptide repeat VSVS12_02139 PF13432 Tetratricopeptide repeat VSVS12_02139 PF16331 VSVS12_02139 VSVS12_02140 PF00691 OmpA family VSVS12_02141 PF04052 TolB amino-terminal domain VSVS12_02141 PF07676 WD40-like Beta Propeller Repeat VSVS12_02142 PF06519 TolA C-terminal VSVS12_02143 PF02472 Biopolymer transport protein ExbD/TolR VSVS12_02144 PF01618 VSVS12_02144 VSVS12_02145 PF03061 Thioesterase superfamily VSVS12_02146 PF09600 VSVS12_02146 VSVS12_02147 PF08173 VSVS12_02147 VSVS12_02148 PF02322 VSVS12_02148 VSVS12_02149 PF01654 VSVS12_02149 VSVS12_02150 PF05491 Holliday junction DNA helicase ruvB C-terminus VSVS12_02150 PF05496 Holliday junction DNA helicase ruvB N-terminus VSVS12_02151 PF01330 RuvA N terminal domain VSVS12_02151 PF07499 RuvA, C-terminal domain VSVS12_02151 PF14520 Helix-hairpin-helix domain VSVS12_02152 PF02075 Crossover junction endodeoxyribonuclease RuvC VSVS12_02153 PF02065 Melibiase VSVS12_02154 PF00384 Molybdopterin oxidoreductase VSVS12_02154 PF01568 Molydopterin dinucleotide binding domain VSVS12_02155 PF03264 NapC/NirT cytochrome c family, N-terminal region VSVS12_02156 PF06796 VSVS12_02156 VSVS12_02157 PF03649 VSVS12_02157 VSVS12_02159 PF01226 Formate/nitrite transporter VSVS12_02160 PF06146 VSVS12_02160 VSVS12_02161 PF05232 VSVS12_02161 VSVS12_02162 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_02162 PF03466 LysR substrate binding domain VSVS12_02163 PF01370 NAD dependent epimerase/dehydratase family VSVS12_02164 PF02698 DUF218 domain VSVS12_02165 PF00004 ATPase family associated with various cellular activities (AAA) VSVS12_02165 PF02861 Clp amino terminal domain VSVS12_02165 PF07724 AAA domain (Cdc48 subfamily) VSVS12_02165 PF10431 C-terminal, D2-small domain, of ClpB protein VSVS12_02166 PF02617 ATP-dependent Clp protease adaptor protein ClpS VSVS12_02167 PF00313 'Cold-shock' DNA-binding domain VSVS12_02168 PF03971 Monomeric isocitrate dehydrogenase VSVS12_02169 PF00849 RNA pseudouridylate synthase VSVS12_02170 PF02683 VSVS12_02170 VSVS12_02170 PF11412 Disulphide bond corrector protein DsbC VSVS12_02170 PF13899 Thioredoxin-like VSVS12_02171 PF00578 AhpC/TSA family VSVS12_02172 PF00152 tRNA synthetases class II (D, K and N) VSVS12_02172 PF01336 OB-fold nucleic acid binding domain VSVS12_02172 PF02938 GAD domain VSVS12_02173 PF01904 Protein of unknown function DUF72 VSVS12_02174 PF13649 Methyltransferase domain VSVS12_02175 PF08003 Protein of unknown function (DUF1698) VSVS12_02176 PF05618 Putative ATP-dependant zinc protease VSVS12_02177 PF14400 VSVS12_02177 VSVS12_02177 PF14402 VSVS12_02177 VSVS12_02178 PF14397 VSVS12_02178 VSVS12_02179 PF00892 EamA-like transporter family VSVS12_02180 PF04310 MukB N-terminal VSVS12_02180 PF13558 Putative exonuclease SbcCD, C subunit VSVS12_02180 PF16330 VSVS12_02180 VSVS12_02181 PF04288 MukE-like family VSVS12_02182 PF03882 KicB killing factor VSVS12_02182 PF17192 VSVS12_02182 VSVS12_02182 PF17193 VSVS12_02182 VSVS12_02183 PF08241 Methyltransferase domain VSVS12_02184 PF02698 DUF218 domain VSVS12_02185 PF00072 Response regulator receiver domain VSVS12_02185 PF00486 Transcriptional regulatory protein, C terminal VSVS12_02186 PF02613 Nitrate reductase delta subunit VSVS12_02187 PF00356 Bacterial regulatory proteins, lacI family VSVS12_02187 PF13377 Periplasmic binding protein-like domain VSVS12_02188 PF04993 TfoX N-terminal domain VSVS12_02188 PF04994 TfoX C-terminal domain VSVS12_02189 PF09335 VSVS12_02189 VSVS12_02190 PF09413 Domain of unknown function (DUF2007) VSVS12_02191 PF00561 alpha/beta hydrolase fold VSVS12_02192 PF00534 Glycosyl transferases group 1 VSVS12_02192 PF08323 Starch synthase catalytic domain VSVS12_02193 PF00483 Nucleotidyl transferase VSVS12_02194 PF01131 DNA topoisomerase VSVS12_02194 PF01396 VSVS12_02194 VSVS12_02194 PF01751 Toprim domain VSVS12_02194 PF08272 Topoisomerase I zinc-ribbon-like VSVS12_02195 PF10692 Protein of unknown function (DUF2498) VSVS12_02196 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VSVS12_02197 PF05433 VSVS12_02197 VSVS12_02198 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VSVS12_02199 PF04376 VSVS12_02199 VSVS12_02199 PF04377 VSVS12_02199 VSVS12_02200 PF01176 Translation initiation factor 1A / IF-1 VSVS12_02201 PF00265 Thymidine kinase VSVS12_02202 PF01406 tRNA synthetases class I (C) catalytic domain VSVS12_02202 PF09190 DALR domain VSVS12_02203 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VSVS12_02204 PF00149 Calcineurin-like phosphoesterase VSVS12_02205 PF00563 EAL domain VSVS12_02205 PF08668 HDOD domain VSVS12_02206 PF02810 SEC-C motif VSVS12_02207 PF07023 VSVS12_02207 VSVS12_02208 PF11207 VSVS12_02208 VSVS12_02209 PF01641 SelR domain VSVS12_02210 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VSVS12_02210 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VSVS12_02211 PF01263 Aldose 1-epimerase VSVS12_02212 PF13847 Methyltransferase domain VSVS12_02214 PF02028 BCCT family transporter VSVS12_02215 PF00924 Mechanosensitive ion channel VSVS12_02216 PF03692 VSVS12_02216 VSVS12_02217 PF04226 VSVS12_02217 VSVS12_02218 PF03692 VSVS12_02218 VSVS12_02220 PF00230 Major intrinsic protein VSVS12_02221 PF02132 RecR protein VSVS12_02221 PF13662 Toprim domain VSVS12_02222 PF02575 YbaB/EbfC DNA-binding family VSVS12_02223 PF12168 VSVS12_02223 VSVS12_02223 PF12169 DNA polymerase III subunits gamma and tau domain III VSVS12_02223 PF12170 DNA polymerase III tau subunit V interacting with alpha VSVS12_02223 PF13177 DNA polymerase III, delta subunit VSVS12_02224 PF00156 Phosphoribosyl transferase domain VSVS12_02225 PF04304 VSVS12_02225 VSVS12_02227 PF00072 Response regulator receiver domain VSVS12_02228 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_02228 PF03466 LysR substrate binding domain VSVS12_02229 PF00881 Nitroreductase family VSVS12_02230 PF00378 Enoyl-CoA hydratase/isomerase family VSVS12_02230 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VSVS12_02230 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VSVS12_02231 PF00108 Thiolase, N-terminal domain VSVS12_02231 PF02803 Thiolase, C-terminal domain VSVS12_02232 PF04542 Sigma-70 region 2 VSVS12_02232 PF08281 Sigma-70, region 4 VSVS12_02233 PF11859 VSVS12_02233 VSVS12_02234 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VSVS12_02235 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VSVS12_02236 PF04333 VSVS12_02236 VSVS12_02237 PF14559 Tetratricopeptide repeat VSVS12_02238 PF03918 Cytochrome C biogenesis protein VSVS12_02239 PF08534 Redoxin VSVS12_02240 PF01578 VSVS12_02240 VSVS12_02240 PF16327 VSVS12_02240 VSVS12_02241 PF03100 CcmE VSVS12_02242 PF04995 VSVS12_02242 VSVS12_02243 PF01578 VSVS12_02243 VSVS12_02244 PF03379 VSVS12_02244 VSVS12_02245 PF00005 ABC transporter VSVS12_02246 PF10975 VSVS12_02246 VSVS12_02247 PF01584 CheW-like domain VSVS12_02248 PF01584 CheW-like domain VSVS12_02249 PF13614 AAA domain VSVS12_02250 PF00072 Response regulator receiver domain VSVS12_02250 PF01339 CheB methylesterase VSVS12_02251 PF01584 CheW-like domain VSVS12_02251 PF01627 Hpt domain VSVS12_02251 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_02251 PF02895 Signal transducing histidine kinase, homodimeric domain VSVS12_02252 PF04344 Chemotaxis phosphatase, CheZ VSVS12_02253 PF00072 Response regulator receiver domain VSVS12_02254 PF04539 Sigma-70 region 3 VSVS12_02254 PF04542 Sigma-70 region 2 VSVS12_02254 PF04545 Sigma-70, region 4 VSVS12_02255 PF10609 ParA/MinD ATPase like VSVS12_02256 PF00448 SRP54-type protein, GTPase domain VSVS12_02257 PF00771 FHIPEP family VSVS12_02258 PF00300 Histidine phosphatase superfamily (branch 1) VSVS12_02259 PF00675 Insulinase (Peptidase family M16) VSVS12_02259 PF05193 Peptidase M16 inactive domain VSVS12_02259 PF16187 VSVS12_02259 VSVS12_02260 PF06185 YecM protein VSVS12_02261 PF00750 tRNA synthetases class I (R) VSVS12_02261 PF03485 Arginyl tRNA synthetase N terminal domain VSVS12_02261 PF05746 DALR anticodon binding domain VSVS12_02262 PF01230 HIT domain VSVS12_02263 PF09012 FeoC like transcriptional regulator VSVS12_02264 PF02421 Ferrous iron transport protein B VSVS12_02264 PF07664 VSVS12_02264 VSVS12_02264 PF07670 Nucleoside recognition VSVS12_02265 PF04023 FeoA domain VSVS12_02266 PF12833 Helix-turn-helix domain VSVS12_02267 PF01297 Periplasmic solute binding protein family VSVS12_02268 PF00005 ABC transporter VSVS12_02269 PF00950 VSVS12_02269 VSVS12_02270 PF13522 Glutamine amidotransferase domain VSVS12_02271 PF02674 VSVS12_02271 VSVS12_02272 PF05036 Sporulation related domain VSVS12_02273 PF02875 Mur ligase family, glutamate ligase domain VSVS12_02273 PF08245 Mur ligase middle domain VSVS12_02274 PF01039 Carboxyl transferase domain VSVS12_02275 PF01416 tRNA pseudouridine synthase VSVS12_02277 PF01118 Semialdehyde dehydrogenase, NAD binding domain VSVS12_02277 PF02774 Semialdehyde dehydrogenase, dimerisation domain VSVS12_02278 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VSVS12_02278 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VSVS12_02278 PF11890 Domain of unknown function (DUF3410) VSVS12_02279 PF00109 Beta-ketoacyl synthase, N-terminal domain VSVS12_02279 PF02801 Beta-ketoacyl synthase, C-terminal domain VSVS12_02280 PF01266 FAD dependent oxidoreductase VSVS12_02280 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VSVS12_02281 PF03358 NADPH-dependent FMN reductase VSVS12_02282 PF08891 VSVS12_02282 VSVS12_02283 PF08238 Sel1 repeat VSVS12_02284 PF16130 VSVS12_02284 VSVS12_02286 PF04315 VSVS12_02286 VSVS12_02287 PF03458 VSVS12_02287 VSVS12_02288 PF01264 Chorismate synthase VSVS12_02289 PF05175 Methyltransferase small domain VSVS12_02290 PF01713 Smr domain VSVS12_02291 PF01312 FlhB HrpN YscU SpaS Family VSVS12_02292 PF01311 VSVS12_02292 VSVS12_02293 PF01313 VSVS12_02293 VSVS12_02294 PF00813 VSVS12_02294 VSVS12_02295 PF04347 VSVS12_02295 VSVS12_02296 PF01052 Surface presentation of antigens (SPOA) VSVS12_02297 PF01052 Surface presentation of antigens (SPOA) VSVS12_02297 PF02154 Flagellar motor switch protein FliM VSVS12_02298 PF03748 VSVS12_02298 VSVS12_02299 PF02120 Flagellar hook-length control protein FliK VSVS12_02300 PF02050 Flagellar FliJ protein VSVS12_02301 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VSVS12_02302 PF02108 VSVS12_02302 VSVS12_02303 PF01706 FliG C-terminal domain VSVS12_02303 PF14841 FliG middle domain VSVS12_02303 PF14842 FliG N-terminal domain VSVS12_02304 PF01514 Secretory protein of YscJ/FliF family VSVS12_02304 PF08345 VSVS12_02304 VSVS12_02305 PF02049 VSVS12_02305 VSVS12_02306 PF00072 Response regulator receiver domain VSVS12_02306 PF00158 Sigma-54 interaction domain VSVS12_02306 PF02954 Bacterial regulatory protein, Fis family VSVS12_02307 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_02307 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_02307 PF13188 PAS domain VSVS12_02308 PF00158 Sigma-54 interaction domain VSVS12_02308 PF02954 Bacterial regulatory protein, Fis family VSVS12_02308 PF06490 VSVS12_02308 VSVS12_02309 PF02561 Flagellar protein FliS VSVS12_02311 PF02465 VSVS12_02311 VSVS12_02311 PF07195 VSVS12_02311 VSVS12_02311 PF07196 Flagellin hook IN motif VSVS12_02312 PF03646 FlaG protein VSVS12_02313 PF00669 Bacterial flagellin N-terminal helical region VSVS12_02313 PF00700 Bacterial flagellin C-terminal helical region VSVS12_02313 PF07196 Flagellin hook IN motif VSVS12_02314 PF00669 Bacterial flagellin N-terminal helical region VSVS12_02314 PF00700 Bacterial flagellin C-terminal helical region VSVS12_02314 PF07196 Flagellin hook IN motif VSVS12_02315 PF00669 Bacterial flagellin N-terminal helical region VSVS12_02315 PF00700 Bacterial flagellin C-terminal helical region VSVS12_02315 PF07196 Flagellin hook IN motif VSVS12_02316 PF04261 Dyp-type peroxidase family VSVS12_02317 PF11143 VSVS12_02317 VSVS12_02318 PF03918 Cytochrome C biogenesis protein VSVS12_02319 PF08534 Redoxin VSVS12_02320 PF01578 VSVS12_02320 VSVS12_02320 PF16327 VSVS12_02320 VSVS12_02321 PF03916 VSVS12_02321 VSVS12_02322 PF13247 4Fe-4S dicluster domain VSVS12_02323 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) VSVS12_02323 PF13435 Cytochrome c554 and c-prime VSVS12_02324 PF02335 Cytochrome c552 VSVS12_02326 PF11169 VSVS12_02326 VSVS12_02327 PF13698 VSVS12_02327 VSVS12_02328 PF09904 Winged helix-turn helix VSVS12_02329 PF03960 ArsC family VSVS12_02330 PF01546 Peptidase family M20/M25/M40 VSVS12_02330 PF07687 Peptidase dimerisation domain VSVS12_02331 PF02557 D-alanyl-D-alanine carboxypeptidase VSVS12_02332 PF11446 VSVS12_02332 VSVS12_02333 PF10071 VSVS12_02333 VSVS12_02334 PF07348 Syd protein (SUKH-2) VSVS12_02335 PF14489 QueF-like protein VSVS12_02335 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term VSVS12_02337 PF00990 GGDEF domain VSVS12_02338 PF03641 Possible lysine decarboxylase VSVS12_02338 PF11892 Domain of unknown function (DUF3412) VSVS12_02338 PF14793 Domain of unknown function (DUF4478) VSVS12_02339 PF01367 5'-3' exonuclease, C-terminal SAM fold VSVS12_02339 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VSVS12_02340 PF01609 Transposase DDE domain VSVS12_02340 PF13006 VSVS12_02340 VSVS12_02341 PF01728 FtsJ-like methyltransferase VSVS12_02342 PF04241 VSVS12_02342 VSVS12_02343 PF12697 Alpha/beta hydrolase family VSVS12_02344 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_02344 PF03466 LysR substrate binding domain VSVS12_02345 PF01527 Transposase VSVS12_02346 PF13683 VSVS12_02346 VSVS12_02347 PF02568 Thiamine biosynthesis protein (ThiI) VSVS12_02347 PF02926 THUMP domain VSVS12_02348 PF00691 OmpA family VSVS12_02348 PF13677 VSVS12_02348 VSVS12_02349 PF01618 VSVS12_02349 VSVS12_02350 PF02609 Exonuclease VII small subunit VSVS12_02351 PF00348 Polyprenyl synthetase VSVS12_02352 PF02779 Transketolase, pyrimidine binding domain VSVS12_02352 PF02780 Transketolase, C-terminal domain VSVS12_02352 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VSVS12_02353 PF12561 VSVS12_02353 VSVS12_02356 PF00849 RNA pseudouridylate synthase VSVS12_02357 PF04287 tRNA pseudouridine synthase C VSVS12_02358 PF12069 VSVS12_02358 VSVS12_02359 PF11743 VSVS12_02359 VSVS12_02360 PF13302 Acetyltransferase (GNAT) domain VSVS12_02362 PF00549 CoA-ligase VSVS12_02362 PF02629 CoA binding domain VSVS12_02363 PF00549 CoA-ligase VSVS12_02363 PF08442 ATP-grasp domain VSVS12_02364 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VSVS12_02364 PF00364 Biotin-requiring enzyme VSVS12_02364 PF02817 e3 binding domain VSVS12_02365 PF00676 Dehydrogenase E1 component VSVS12_02365 PF02779 Transketolase, pyrimidine binding domain VSVS12_02365 PF16078 VSVS12_02365 VSVS12_02365 PF16870 VSVS12_02365 VSVS12_02366 PF13085 2Fe-2S iron-sulfur cluster binding domain VSVS12_02366 PF13534 4Fe-4S dicluster domain VSVS12_02367 PF00890 FAD binding domain VSVS12_02367 PF02910 Fumarate reductase flavoprotein C-term VSVS12_02369 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VSVS12_02370 PF00285 Citrate synthase VSVS12_02371 PF01784 NIF3 (NGG1p interacting factor 3) VSVS12_02372 PF08907 VSVS12_02372 VSVS12_02374 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VSVS12_02374 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VSVS12_02374 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VSVS12_02374 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VSVS12_02375 PF03925 SeqA protein VSVS12_02375 PF17206 VSVS12_02375 VSVS12_02376 PF12697 Alpha/beta hydrolase family VSVS12_02377 PF10981 VSVS12_02377 VSVS12_02378 PF00258 Flavodoxin VSVS12_02379 PF14539 Domain of unknown function (DUF4442) VSVS12_02380 PF01475 Ferric uptake regulator family VSVS12_02381 PF00749 tRNA synthetases class I (E and Q), catalytic domain VSVS12_02381 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain VSVS12_02382 PF00367 phosphotransferase system, EIIB VSVS12_02382 PF02378 Phosphotransferase system, EIIC VSVS12_02383 PF01979 Amidohydrolase family VSVS12_02384 PF00480 ROK family VSVS12_02384 PF01047 MarR family VSVS12_02385 PF00999 Sodium/hydrogen exchanger family VSVS12_02385 PF02254 TrkA-N domain VSVS12_02386 PF00733 Asparagine synthase VSVS12_02386 PF13537 Glutamine amidotransferase domain VSVS12_02387 PF00854 POT family VSVS12_02388 PF01963 VSVS12_02388 VSVS12_02390 PF11346 VSVS12_02390 VSVS12_02391 PF01713 Smr domain VSVS12_02392 PF00849 RNA pseudouridylate synthase VSVS12_02392 PF01479 S4 domain VSVS12_02393 PF14681 Uracil phosphoribosyltransferase VSVS12_02394 PF00586 AIR synthase related protein, N-terminal domain VSVS12_02394 PF02769 AIR synthase related protein, C-terminal domain VSVS12_02395 PF00551 Formyl transferase VSVS12_02396 PF04391 VSVS12_02396 VSVS12_02397 PF06786 VSVS12_02397 VSVS12_02398 PF14056 VSVS12_02398 VSVS12_02399 PF12286 VSVS12_02399 VSVS12_02400 PF02769 AIR synthase related protein, C-terminal domain VSVS12_02400 PF13507 CobB/CobQ-like glutamine amidotransferase domain VSVS12_02401 PF00497 Bacterial extracellular solute-binding proteins, family 3 VSVS12_02401 PF01464 Transglycosylase SLT domain VSVS12_02403 PF14437 VSVS12_02403 VSVS12_02404 PF00571 CBS domain VSVS12_02404 PF01595 VSVS12_02404 VSVS12_02404 PF03471 Transporter associated domain VSVS12_02405 PF03806 VSVS12_02405 VSVS12_02406 PF07963 Prokaryotic N-terminal methylation motif VSVS12_02409 PF12019 Type II transport protein GspH VSVS12_02410 PF07963 Prokaryotic N-terminal methylation motif VSVS12_02410 PF16732 VSVS12_02410 VSVS12_02411 PF00226 DnaJ domain VSVS12_02411 PF00684 DnaJ central domain VSVS12_02411 PF01556 DnaJ C terminal domain VSVS12_02412 PF00012 Hsp70 protein VSVS12_02413 PF13683 VSVS12_02413 VSVS12_02414 PF01527 Transposase VSVS12_02415 PF05635 23S rRNA-intervening sequence protein VSVS12_02416 PF00375 Sodium:dicarboxylate symporter family VSVS12_02418 PF01025 GrpE VSVS12_02419 PF01513 ATP-NAD kinase VSVS12_02421 PF02463 RecF/RecN/SMC N terminal domain VSVS12_02422 PF04355 SmpA / OmlA family VSVS12_02423 PF03658 RnfH family Ubiquitin VSVS12_02424 PF03364 Polyketide cyclase / dehydrase and lipid transport VSVS12_02425 PF01668 SmpB protein VSVS12_02426 PF01844 HNH endonuclease VSVS12_02427 PF00924 Mechanosensitive ion channel VSVS12_02428 PF03372 Endonuclease/Exonuclease/phosphatase family VSVS12_02429 PF01979 Amidohydrolase family VSVS12_02431 PF00583 Acetyltransferase (GNAT) family VSVS12_02431 PF00795 Carbon-nitrogen hydrolase VSVS12_02432 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_02433 PF00753 Metallo-beta-lactamase superfamily VSVS12_02433 PF07521 RNA-metabolising metallo-beta-lactamase VSVS12_02433 PF10996 Beta-Casp domain VSVS12_02435 PF00367 phosphotransferase system, EIIB VSVS12_02435 PF02378 Phosphotransferase system, EIIC VSVS12_02436 PF05661 VSVS12_02436 VSVS12_02437 PF01053 Cys/Met metabolism PLP-dependent enzyme VSVS12_02438 PF01235 VSVS12_02438 VSVS12_02439 PF01184 VSVS12_02439 VSVS12_02440 PF03553 VSVS12_02440 VSVS12_02441 PF00117 Glutamine amidotransferase class-I VSVS12_02441 PF00958 GMP synthase C terminal domain VSVS12_02441 PF02540 NAD synthase VSVS12_02442 PF00478 IMP dehydrogenase / GMP reductase domain VSVS12_02442 PF00571 CBS domain VSVS12_02443 PF02601 VSVS12_02443 VSVS12_02443 PF13742 VSVS12_02443 VSVS12_02444 PF07191 zinc-ribbons VSVS12_02446 PF01926 50S ribosome-binding GTPase VSVS12_02446 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VSVS12_02447 PF13360 PQQ-like domain VSVS12_02448 PF09976 Tetratricopeptide repeat VSVS12_02449 PF03129 Anticodon binding domain VSVS12_02449 PF13393 Histidyl-tRNA synthetase VSVS12_02450 PF04551 GcpE protein VSVS12_02451 PF13413 Helix-turn-helix domain VSVS12_02451 PF13464 VSVS12_02451 VSVS12_02452 PF04055 Radical SAM superfamily VSVS12_02453 PF02657 Fe-S metabolism associated domain VSVS12_02454 PF00899 ThiF family VSVS12_02455 PF03562 MltA specific insert domain VSVS12_02455 PF06725 3D domain VSVS12_02456 PF11012 VSVS12_02456 VSVS12_02457 PF00583 Acetyltransferase (GNAT) family VSVS12_02457 PF00696 Amino acid kinase family VSVS12_02459 PF13538 UvrD-like helicase C-terminal domain VSVS12_02459 PF13604 AAA domain VSVS12_02460 PF00580 UvrD/REP helicase N-terminal domain VSVS12_02460 PF12705 PD-(D/E)XK nuclease superfamily VSVS12_02460 PF13361 UvrD-like helicase C-terminal domain VSVS12_02461 PF04257 Exodeoxyribonuclease V, gamma subunit VSVS12_02462 PF03595 Voltage-dependent anion channel VSVS12_02463 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_02463 PF03466 LysR substrate binding domain VSVS12_02464 PF07130 YebG protein VSVS12_02465 PF00873 AcrB/AcrD/AcrF family VSVS12_02466 PF16576 VSVS12_02466 VSVS12_02471 PF03932 CutC family VSVS12_02472 PF01895 PhoU domain VSVS12_02473 PF00005 ABC transporter VSVS12_02474 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_02475 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_02476 PF02541 Ppx/GppA phosphatase family VSVS12_02477 PF12849 PBP superfamily domain VSVS12_02478 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_02478 PF00989 PAS fold VSVS12_02478 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_02478 PF11808 VSVS12_02478 VSVS12_02479 PF00072 Response regulator receiver domain VSVS12_02479 PF00486 Transcriptional regulatory protein, C terminal VSVS12_02480 PF04381 Putative exonuclease, RdgC VSVS12_02481 PF01136 VSVS12_02481 VSVS12_02481 PF16325 VSVS12_02481 VSVS12_02482 PF00037 4Fe-4S binding domain VSVS12_02484 PF03411 Penicillin-insensitive murein endopeptidase VSVS12_02485 PF08921 Domain of unknown function (DUF1904) VSVS12_02486 PF02355 Protein export membrane protein VSVS12_02486 PF07549 SecD/SecF GG Motif VSVS12_02487 PF02355 Protein export membrane protein VSVS12_02487 PF07549 SecD/SecF GG Motif VSVS12_02487 PF13721 SecD export protein N-terminal TM region VSVS12_02488 PF02699 Preprotein translocase subunit VSVS12_02489 PF01702 Queuine tRNA-ribosyltransferase VSVS12_02490 PF02547 Queuosine biosynthesis protein VSVS12_02491 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_02491 PF12729 VSVS12_02491 VSVS12_02492 PF00571 CBS domain VSVS12_02493 PF00463 Isocitrate lyase family VSVS12_02494 PF01274 Malate synthase VSVS12_02495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_02495 PF03466 LysR substrate binding domain VSVS12_02496 PF00578 AhpC/TSA family VSVS12_02496 PF10417 C-terminal domain of 1-Cys peroxiredoxin VSVS12_02497 PF01592 NifU-like N terminal domain VSVS12_02498 PF14057 VSVS12_02498 VSVS12_02499 PF14602 Hexapeptide repeat of succinyl-transferase VSVS12_02499 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle VSVS12_02500 PF01464 Transglycosylase SLT domain VSVS12_02500 PF11873 Domain of unknown function (DUF3393) VSVS12_02501 PF05940 VSVS12_02501 VSVS12_02502 PF06094 AIG2-like family VSVS12_02503 PF01554 MatE VSVS12_02505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_02505 PF03466 LysR substrate binding domain VSVS12_02506 PF02417 VSVS12_02506 VSVS12_02507 PF00691 OmpA family VSVS12_02508 PF13400 VSVS12_02508 VSVS12_02509 PF16964 VSVS12_02509 VSVS12_02512 PF00482 Type II secretion system (T2SS), protein F VSVS12_02513 PF00482 Type II secretion system (T2SS), protein F VSVS12_02514 PF00437 Type II/IV secretion system protein VSVS12_02517 PF00263 VSVS12_02517 VSVS12_02517 PF04972 BON domain VSVS12_02517 PF13629 VSVS12_02517 VSVS12_02518 PF08666 SAF domain VSVS12_02518 PF16976 VSVS12_02518 VSVS12_02519 PF01609 Transposase DDE domain VSVS12_02520 PF01478 Type IV leader peptidase family VSVS12_02521 PF04964 VSVS12_02521 VSVS12_02523 PF01609 Transposase DDE domain VSVS12_02524 PF00501 AMP-binding enzyme VSVS12_02525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_02525 PF03466 LysR substrate binding domain VSVS12_02526 PF00009 Elongation factor Tu GTP binding domain VSVS12_02526 PF00679 Elongation factor G C-terminus VSVS12_02526 PF03144 Elongation factor Tu domain 2 VSVS12_02526 PF03764 Elongation factor G, domain IV VSVS12_02526 PF14492 Elongation Factor G, domain II VSVS12_02527 PF13481 AAA domain VSVS12_02527 PF13541 Subunit ChlI of Mg-chelatase VSVS12_02528 PF07238 PilZ domain VSVS12_02529 PF00702 haloacid dehalogenase-like hydrolase VSVS12_02530 PF10144 VSVS12_02530 VSVS12_02531 PF13683 VSVS12_02531 VSVS12_02532 PF01527 Transposase VSVS12_02533 PF01048 Phosphorylase superfamily VSVS12_02534 PF01676 Metalloenzyme superfamily VSVS12_02535 PF00591 Glycosyl transferase family, a/b domain VSVS12_02535 PF02885 Glycosyl transferase family, helical bundle domain VSVS12_02535 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain VSVS12_02536 PF01791 DeoC/LacD family aldolase VSVS12_02537 PF01773 Na+ dependent nucleoside transporter N-terminus VSVS12_02537 PF07662 Na+ dependent nucleoside transporter C-terminus VSVS12_02537 PF07670 Nucleoside recognition VSVS12_02538 PF01026 TatD related DNase VSVS12_02539 PF17320 VSVS12_02539 VSVS12_02540 PF03883 VSVS12_02540 VSVS12_02541 PF01235 VSVS12_02541 VSVS12_02542 PF12065 VSVS12_02542 VSVS12_02543 PF01814 Hemerythrin HHE cation binding domain VSVS12_02544 PF03167 Uracil DNA glycosylase superfamily VSVS12_02545 PF01261 Xylose isomerase-like TIM barrel VSVS12_02546 PF01228 Glycine radical VSVS12_02547 PF03067 Chitin binding domain VSVS12_02548 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_02548 PF03466 LysR substrate binding domain VSVS12_02549 PF01925 VSVS12_02549 VSVS12_02550 PF02142 MGS-like domain VSVS12_02550 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VSVS12_02550 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VSVS12_02551 PF00117 Glutamine amidotransferase class-I VSVS12_02551 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VSVS12_02552 PF01113 Dihydrodipicolinate reductase, N-terminus VSVS12_02552 PF05173 Dihydrodipicolinate reductase, C-terminus VSVS12_02553 PF00293 NUDIX domain VSVS12_02554 PF01043 SecA preprotein cross-linking domain VSVS12_02554 PF02810 SEC-C motif VSVS12_02554 PF07516 SecA Wing and Scaffold domain VSVS12_02554 PF07517 SecA DEAD-like domain VSVS12_02555 PF05258 VSVS12_02555 VSVS12_02556 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase VSVS12_02557 PF00091 Tubulin/FtsZ family, GTPase domain VSVS12_02557 PF12327 FtsZ family, C-terminal domain VSVS12_02558 PF02491 SHS2 domain inserted in FTSA VSVS12_02558 PF14450 Cell division protein FtsA VSVS12_02559 PF03799 Cell division protein FtsQ VSVS12_02559 PF08478 POTRA domain, FtsQ-type VSVS12_02560 PF01225 Mur ligase family, catalytic domain VSVS12_02560 PF02875 Mur ligase family, glutamate ligase domain VSVS12_02560 PF08245 Mur ligase middle domain VSVS12_02561 PF03033 Glycosyltransferase family 28 N-terminal domain VSVS12_02561 PF04101 Glycosyltransferase family 28 C-terminal domain VSVS12_02562 PF01098 VSVS12_02562 VSVS12_02563 PF02875 Mur ligase family, glutamate ligase domain VSVS12_02563 PF08245 Mur ligase middle domain VSVS12_02564 PF00953 Glycosyl transferase family 4 VSVS12_02564 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 VSVS12_02565 PF01225 Mur ligase family, catalytic domain VSVS12_02565 PF02875 Mur ligase family, glutamate ligase domain VSVS12_02565 PF08245 Mur ligase middle domain VSVS12_02566 PF01225 Mur ligase family, catalytic domain VSVS12_02566 PF02875 Mur ligase family, glutamate ligase domain VSVS12_02566 PF08245 Mur ligase middle domain VSVS12_02567 PF00905 Penicillin binding protein transpeptidase domain VSVS12_02567 PF03717 Penicillin-binding Protein dimerisation domain VSVS12_02568 PF04999 VSVS12_02568 VSVS12_02569 PF01795 MraW methylase family VSVS12_02570 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VSVS12_02571 PF04348 LppC putative lipoprotein VSVS12_02572 PF02021 Uncharacterised protein family UPF0102 VSVS12_02573 PF13580 SIS domain VSVS12_02574 PF04972 BON domain VSVS12_02576 PF04386 Stringent starvation protein B VSVS12_02577 PF00043 Glutathione S-transferase, C-terminal domain VSVS12_02577 PF13417 Glutathione S-transferase, N-terminal domain VSVS12_02578 PF02167 Cytochrome C1 family VSVS12_02579 PF00032 Cytochrome b(C-terminal)/b6/petD VSVS12_02579 PF00033 Cytochrome b(N-terminal)/b6/petB VSVS12_02580 PF00355 Rieske [2Fe-2S] domain VSVS12_02580 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal VSVS12_02581 PF00380 Ribosomal protein S9/S16 VSVS12_02582 PF00572 Ribosomal protein L13 VSVS12_02584 PF03969 AFG1-like ATPase VSVS12_02585 PF06295 VSVS12_02585 VSVS12_02586 PF00595 PDZ domain (Also known as DHR or GLGF) VSVS12_02586 PF13180 PDZ domain VSVS12_02586 PF13365 Trypsin-like peptidase domain VSVS12_02587 PF13180 PDZ domain VSVS12_02587 PF13365 Trypsin-like peptidase domain VSVS12_02588 PF00521 DNA gyrase/topoisomerase IV, subunit A VSVS12_02588 PF03989 DNA gyrase C-terminal domain, beta-propeller VSVS12_02589 PF00204 DNA gyrase B VSVS12_02589 PF00986 DNA gyrase B subunit, carboxyl terminus VSVS12_02589 PF01751 Toprim domain VSVS12_02589 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_02590 PF05728 Uncharacterised protein family (UPF0227) VSVS12_02591 PF00149 Calcineurin-like phosphoesterase VSVS12_02592 PF06853 VSVS12_02592 VSVS12_02593 PF00293 NUDIX domain VSVS12_02594 PF02321 Outer membrane efflux protein VSVS12_02595 PF01609 Transposase DDE domain VSVS12_02595 PF13006 VSVS12_02595 VSVS12_02596 PF00158 Sigma-54 interaction domain VSVS12_02596 PF02954 Bacterial regulatory protein, Fis family VSVS12_02597 PF00152 tRNA synthetases class II (D, K and N) VSVS12_02597 PF01336 OB-fold nucleic acid binding domain VSVS12_02598 PF00472 RF-1 domain VSVS12_02598 PF03462 PCRF domain VSVS12_02599 PF05525 VSVS12_02599 VSVS12_02600 PF05175 Methyltransferase small domain VSVS12_02601 PF00270 DEAD/DEAH box helicase VSVS12_02601 PF00271 Helicase conserved C-terminal domain VSVS12_02602 PF00009 Elongation factor Tu GTP binding domain VSVS12_02602 PF16658 VSVS12_02602 VSVS12_02603 PF00583 Acetyltransferase (GNAT) family VSVS12_02604 PF03603 DNA polymerase III psi subunit VSVS12_02605 PF13527 Acetyltransferase (GNAT) domain VSVS12_02606 PF02036 SCP-2 sterol transfer family VSVS12_02607 PF00563 EAL domain VSVS12_02607 PF00990 GGDEF domain VSVS12_02607 PF08448 PAS fold VSVS12_02607 PF13188 PAS domain VSVS12_02608 PF01136 VSVS12_02608 VSVS12_02609 PF01136 VSVS12_02609 VSVS12_02610 PF00149 Calcineurin-like phosphoesterase VSVS12_02610 PF02872 5'-nucleotidase, C-terminal domain VSVS12_02612 PF01554 MatE VSVS12_02613 PF12802 MarR family VSVS12_02615 PF00013 KH domain VSVS12_02615 PF00575 S1 RNA binding domain VSVS12_02615 PF01138 3' exoribonuclease family, domain 1 VSVS12_02615 PF03725 3' exoribonuclease family, domain 2 VSVS12_02615 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain VSVS12_02616 PF00312 Ribosomal protein S15 VSVS12_02617 PF01048 Phosphorylase superfamily VSVS12_02618 PF03186 VSVS12_02618 VSVS12_02619 PF01497 Periplasmic binding protein VSVS12_02620 PF03458 VSVS12_02620 VSVS12_02621 PF00291 Pyridoxal-phosphate dependent enzyme VSVS12_02621 PF14821 Threonine synthase N terminus VSVS12_02622 PF00288 GHMP kinases N terminal domain VSVS12_02622 PF08544 GHMP kinases C terminal VSVS12_02623 PF00696 Amino acid kinase family VSVS12_02623 PF00742 Homoserine dehydrogenase VSVS12_02623 PF01842 ACT domain VSVS12_02623 PF03447 Homoserine dehydrogenase, NAD binding domain VSVS12_02623 PF13840 ACT domain VSVS12_02625 PF03737 Demethylmenaquinone methyltransferase VSVS12_02626 PF11697 VSVS12_02626 VSVS12_02627 PF00072 Response regulator receiver domain VSVS12_02627 PF00486 Transcriptional regulatory protein, C terminal VSVS12_02628 PF00294 pfkB family carbohydrate kinase VSVS12_02628 PF01467 Cytidylyltransferase VSVS12_02629 PF03710 Glutamate-ammonia ligase adenylyltransferase VSVS12_02629 PF08335 GlnD PII-uridylyltransferase VSVS12_02630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_02631 PF07885 Ion channel VSVS12_02632 PF01928 CYTH domain VSVS12_02632 PF05235 CHAD domain VSVS12_02633 PF01865 Protein of unknown function DUF47 VSVS12_02634 PF01384 VSVS12_02634 VSVS12_02635 PF08239 Bacterial SH3 domain VSVS12_02636 PF16537 VSVS12_02636 VSVS12_02637 PF01471 Putative peptidoglycan binding domain VSVS12_02637 PF13401 AAA domain VSVS12_02638 PF01743 Poly A polymerase head domain VSVS12_02638 PF01966 HD domain VSVS12_02638 PF12627 Probable RNA and SrmB- binding site of polymerase A VSVS12_02639 PF00113 Enolase, C-terminal TIM barrel domain VSVS12_02639 PF03952 Enolase, N-terminal domain VSVS12_02640 PF00117 Glutamine amidotransferase class-I VSVS12_02640 PF06418 CTP synthase N-terminus VSVS12_02641 PF03819 MazG nucleotide pyrophosphohydrolase domain VSVS12_02642 PF02824 TGS domain VSVS12_02642 PF04607 Region found in RelA / SpoT proteins VSVS12_02642 PF13291 ACT domain VSVS12_02642 PF13328 HD domain VSVS12_02643 PF01938 TRAM domain VSVS12_02643 PF05958 tRNA (Uracil-5-)-methyltransferase VSVS12_02644 PF00072 Response regulator receiver domain VSVS12_02644 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_02644 PF01627 Hpt domain VSVS12_02644 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_02644 PF09984 VSVS12_02644 VSVS12_02645 PF01648 4'-phosphopantetheinyl transferase superfamily VSVS12_02646 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ VSVS12_02647 PF02565 Recombination protein O C terminal VSVS12_02647 PF11967 Recombination protein O N terminal VSVS12_02648 PF01926 50S ribosome-binding GTPase VSVS12_02648 PF07650 KH domain VSVS12_02649 PF00035 Double-stranded RNA binding motif VSVS12_02649 PF14622 Ribonuclease-III-like VSVS12_02650 PF00717 Peptidase S24-like VSVS12_02650 PF10502 Signal peptidase, peptidase S26 VSVS12_02651 PF00009 Elongation factor Tu GTP binding domain VSVS12_02651 PF00679 Elongation factor G C-terminus VSVS12_02651 PF03144 Elongation factor Tu domain 2 VSVS12_02651 PF06421 GTP-binding protein LepA C-terminus VSVS12_02652 PF04246 VSVS12_02652 VSVS12_02653 PF03888 MucB/RseB family VSVS12_02653 PF17188 VSVS12_02653 VSVS12_02654 PF03872 Anti sigma-E protein RseA, N-terminal domain VSVS12_02654 PF03873 Anti sigma-E protein RseA, C-terminal domain VSVS12_02655 PF04542 Sigma-70 region 2 VSVS12_02655 PF08281 Sigma-70, region 4 VSVS12_02656 PF00890 FAD binding domain VSVS12_02656 PF02910 Fumarate reductase flavoprotein C-term VSVS12_02658 PF03937 Flavinator of succinate dehydrogenase VSVS12_02659 PF01571 Aminomethyltransferase folate-binding domain VSVS12_02660 PF04073 Aminoacyl-tRNA editing domain VSVS12_02661 PF06526 Protein of unknown function (DUF1107) VSVS12_02662 PF01494 FAD binding domain VSVS12_02663 PF01494 FAD binding domain VSVS12_02664 PF03695 Uncharacterised protein family (UPF0149) VSVS12_02665 PF05164 Cell division protein ZapA VSVS12_02666 PF01812 5-formyltetrahydrofolate cyclo-ligase family VSVS12_02667 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VSVS12_02668 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VSVS12_02668 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VSVS12_02669 PF10369 Small subunit of acetolactate synthase VSVS12_02669 PF13710 ACT domain VSVS12_02670 PF00205 Thiamine pyrophosphate enzyme, central domain VSVS12_02670 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VSVS12_02670 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VSVS12_02671 PF00501 AMP-binding enzyme VSVS12_02672 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_02672 PF03466 LysR substrate binding domain VSVS12_02673 PF00682 HMGL-like VSVS12_02673 PF08502 LeuA allosteric (dimerisation) domain VSVS12_02674 PF00180 Isocitrate/isopropylmalate dehydrogenase VSVS12_02675 PF00330 Aconitase family (aconitate hydratase) VSVS12_02676 PF00694 Aconitase C-terminal domain VSVS12_02677 PF04784 VSVS12_02677 VSVS12_02685 PF01966 HD domain VSVS12_02685 PF11871 VSVS12_02685 VSVS12_02686 PF06983 3-demethylubiquinone-9 3-methyltransferase VSVS12_02687 PF00356 Bacterial regulatory proteins, lacI family VSVS12_02687 PF13377 Periplasmic binding protein-like domain VSVS12_02688 PF04794 YdjC-like protein VSVS12_02689 PF02056 Family 4 glycosyl hydrolase VSVS12_02689 PF11975 Family 4 glycosyl hydrolase C-terminal domain VSVS12_02690 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit VSVS12_02691 PF02378 Phosphotransferase system, EIIC VSVS12_02692 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VSVS12_02693 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_02693 PF12729 VSVS12_02693 VSVS12_02694 PF01609 Transposase DDE domain VSVS12_02695 PF01609 Transposase DDE domain VSVS12_02696 PF00719 Inorganic pyrophosphatase VSVS12_02697 PF00892 EamA-like transporter family VSVS12_02701 PF13036 Protein of unknown function (DUF3897) VSVS12_02704 PF01693 Caulimovirus viroplasmin VSVS12_02705 PF03175 DNA polymerase type B, organellar and viral VSVS12_02707 PF12728 Helix-turn-helix domain VSVS12_02708 PF00589 Phage integrase family VSVS12_02708 PF13495 Phage integrase, N-terminal SAM-like domain VSVS12_02710 PF10439 VSVS12_02710 VSVS12_02710 PF13488 VSVS12_02710 VSVS12_02712 PF08220 DeoR-like helix-turn-helix domain VSVS12_02712 PF13280 VSVS12_02712 VSVS12_02714 PF10980 Protein of unknown function (DUF2787) VSVS12_02715 PF01609 Transposase DDE domain VSVS12_02718 PF00589 Phage integrase family VSVS12_02718 PF13356 Domain of unknown function (DUF4102) VSVS12_02720 PF00589 Phage integrase family VSVS12_02721 PF01076 Plasmid recombination enzyme VSVS12_02724 PF05840 VSVS12_02724 VSVS12_02726 PF00263 VSVS12_02726 VSVS12_02734 PF10734 VSVS12_02734 VSVS12_02735 PF05707 Zonular occludens toxin (Zot) VSVS12_02738 PF06271 VSVS12_02738 VSVS12_02739 PF02664 S-Ribosylhomocysteinase (LuxS) VSVS12_02741 PF04262 Glutamate-cysteine ligase VSVS12_02742 PF00675 Insulinase (Peptidase family M16) VSVS12_02742 PF05193 Peptidase M16 inactive domain VSVS12_02743 PF09335 VSVS12_02743 VSVS12_02744 PF08240 Alcohol dehydrogenase GroES-like domain VSVS12_02744 PF13602 Zinc-binding dehydrogenase VSVS12_02745 PF03977 VSVS12_02745 VSVS12_02746 PF00364 Biotin-requiring enzyme VSVS12_02746 PF00682 HMGL-like VSVS12_02746 PF02436 Conserved carboxylase domain VSVS12_02747 PF04277 VSVS12_02747 VSVS12_02756 PF02599 Global regulator protein family VSVS12_02757 PF00696 Amino acid kinase family VSVS12_02758 PF01411 tRNA synthetases class II (A) VSVS12_02758 PF02272 DHHA1 domain VSVS12_02758 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VSVS12_02759 PF00154 recA bacterial DNA recombination protein VSVS12_02760 PF02464 Competence-damaged protein VSVS12_02761 PF00488 MutS domain V VSVS12_02761 PF01624 MutS domain I VSVS12_02761 PF05188 MutS domain II VSVS12_02761 PF05190 MutS family domain IV VSVS12_02761 PF05192 MutS domain III VSVS12_02762 PF00114 Pilin (bacterial filament) VSVS12_02762 PF07963 Prokaryotic N-terminal methylation motif VSVS12_02763 PF00437 Type II/IV secretion system protein VSVS12_02763 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VSVS12_02764 PF00482 Type II secretion system (T2SS), protein F VSVS12_02765 PF01478 Type IV leader peptidase family VSVS12_02766 PF01121 Dephospho-CoA kinase VSVS12_02767 PF07072 Protein of unknown function (DUF1342) VSVS12_02768 PF03884 Domain of unknown function (DUF329) VSVS12_02769 PF01245 Ribosomal protein L19 VSVS12_02770 PF01746 tRNA (Guanine-1)-methyltransferase VSVS12_02771 PF01782 RimM N-terminal domain VSVS12_02771 PF05239 PRC-barrel domain VSVS12_02772 PF00886 Ribosomal protein S16 VSVS12_02773 PF00448 SRP54-type protein, GTPase domain VSVS12_02773 PF02881 SRP54-type protein, helical bundle domain VSVS12_02773 PF02978 Signal peptide binding domain VSVS12_02774 PF01578 VSVS12_02774 VSVS12_02775 PF00571 CBS domain VSVS12_02775 PF01595 VSVS12_02775 VSVS12_02775 PF03471 Transporter associated domain VSVS12_02776 PF00140 Sigma-70 factor, region 1 VSVS12_02776 PF04539 Sigma-70 region 3 VSVS12_02776 PF04542 Sigma-70 region 2 VSVS12_02776 PF04545 Sigma-70, region 4 VSVS12_02777 PF01476 LysM domain VSVS12_02777 PF01551 Peptidase family M23 VSVS12_02778 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) VSVS12_02779 PF01975 Survival protein SurE VSVS12_02780 PF01142 tRNA pseudouridine synthase D (TruD) VSVS12_02781 PF02542 YgbB family VSVS12_02782 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VSVS12_02783 PF04977 Septum formation initiator VSVS12_02784 PF02673 VSVS12_02784 VSVS12_02785 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VSVS12_02786 PF02152 Dihydroneopterin aldolase VSVS12_02787 PF02660 VSVS12_02787 VSVS12_02788 PF00561 alpha/beta hydrolase fold VSVS12_02789 PF00814 Glycoprotease family VSVS12_02790 PF01165 Ribosomal protein S21 VSVS12_02791 PF09424 Yqey-like protein VSVS12_02792 PF01807 CHC2 zinc finger VSVS12_02792 PF08275 DNA primase catalytic core, N-terminal domain VSVS12_02792 PF08278 DNA primase DnaG DnaB-binding VSVS12_02792 PF10410 DnaB-helicase binding domain of primase VSVS12_02792 PF13155 Toprim-like VSVS12_02793 PF00140 Sigma-70 factor, region 1 VSVS12_02793 PF03979 Sigma-70 factor, region 1 VSVS12_02793 PF04539 Sigma-70 region 3 VSVS12_02793 PF04542 Sigma-70 region 2 VSVS12_02793 PF04545 Sigma-70, region 4 VSVS12_02793 PF04546 Sigma-70, non-essential region VSVS12_02795 PF00589 Phage integrase family VSVS12_02795 PF13356 Domain of unknown function (DUF4102) VSVS12_02795 PF14659 Phage integrase, N-terminal SAM-like domain VSVS12_02796 PF00665 Integrase core domain VSVS12_02796 PF13276 VSVS12_02796 VSVS12_02797 PF01527 Transposase VSVS12_02798 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_02798 PF13682 Chemoreceptor zinc-binding domain VSVS12_02801 PF00072 Response regulator receiver domain VSVS12_02805 PF00691 OmpA family VSVS12_02806 PF16967 VSVS12_02806 VSVS12_02809 PF05930 Prophage CP4-57 regulatory protein (AlpA) VSVS12_02810 PF04002 RadC-like JAB domain VSVS12_02811 PF10980 Protein of unknown function (DUF2787) VSVS12_02812 PF10980 Protein of unknown function (DUF2787) VSVS12_02819 PF14237 VSVS12_02819 VSVS12_02820 PF11726 VSVS12_02820 VSVS12_02822 PF00990 GGDEF domain VSVS12_02822 PF01814 Hemerythrin HHE cation binding domain VSVS12_02823 PF00860 Permease family VSVS12_02825 PF13444 Acetyltransferase (GNAT) domain VSVS12_02826 PF03480 Bacterial extracellular solute-binding protein, family 7 VSVS12_02827 PF00893 Small Multidrug Resistance protein VSVS12_02828 PF00107 Zinc-binding dehydrogenase VSVS12_02828 PF08240 Alcohol dehydrogenase GroES-like domain VSVS12_02830 PF00765 Autoinducer synthetase VSVS12_02831 PF16245 VSVS12_02831 VSVS12_02832 PF00196 Bacterial regulatory proteins, luxR family VSVS12_02832 PF03472 Autoinducer binding domain VSVS12_02833 PF01380 SIS domain VSVS12_02833 PF13522 Glutamine amidotransferase domain VSVS12_02834 PF00455 VSVS12_02834 VSVS12_02834 PF08220 DeoR-like helix-turn-helix domain VSVS12_02835 PF00224 Pyruvate kinase, barrel domain VSVS12_02835 PF02887 Pyruvate kinase, alpha/beta domain VSVS12_02836 PF04402 Protein of unknown function (DUF541) VSVS12_02837 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_02837 PF03466 LysR substrate binding domain VSVS12_02838 PF01810 VSVS12_02838 VSVS12_02839 PF00924 Mechanosensitive ion channel VSVS12_02839 PF05552 Conserved TM helix VSVS12_02840 PF01116 Fructose-bisphosphate aldolase class-II VSVS12_02841 PF00162 Phosphoglycerate kinase VSVS12_02842 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VSVS12_02842 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VSVS12_02844 PF00456 Transketolase, thiamine diphosphate binding domain VSVS12_02844 PF02779 Transketolase, pyrimidine binding domain VSVS12_02844 PF02780 Transketolase, C-terminal domain VSVS12_02845 PF00438 S-adenosylmethionine synthetase, N-terminal domain VSVS12_02845 PF02772 S-adenosylmethionine synthetase, central domain VSVS12_02845 PF02773 S-adenosylmethionine synthetase, C-terminal domain VSVS12_02847 PF09955 VSVS12_02847 VSVS12_02848 PF10263 VSVS12_02848 VSVS12_02848 PF17283 VSVS12_02848 VSVS12_02849 PF04231 Endonuclease I VSVS12_02850 PF04452 RNA methyltransferase VSVS12_02851 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VSVS12_02851 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VSVS12_02852 PF02622 Uncharacterized ACR, COG1678 VSVS12_02853 PF03652 Uncharacterised protein family (UPF0081) VSVS12_02854 PF01523 Putative modulator of DNA gyrase VSVS12_02855 PF04751 Protein of unknown function (DUF615) VSVS12_02856 PF00005 ABC transporter VSVS12_02857 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_02858 PF01547 Bacterial extracellular solute-binding protein VSVS12_02860 PF02441 Flavoprotein VSVS12_02861 PF01225 Mur ligase family, catalytic domain VSVS12_02861 PF02875 Mur ligase family, glutamate ligase domain VSVS12_02861 PF08245 Mur ligase middle domain VSVS12_02862 PF00316 Fructose-1-6-bisphosphatase VSVS12_02863 PF00719 Inorganic pyrophosphatase VSVS12_02864 PF10973 VSVS12_02864 VSVS12_02865 PF06094 AIG2-like family VSVS12_02866 PF04357 VSVS12_02866 VSVS12_02867 PF01103 Surface antigen VSVS12_02867 PF07244 Surface antigen variable number repeat VSVS12_02867 PF17243 VSVS12_02867 VSVS12_02868 PF01625 Peptide methionine sulfoxide reductase VSVS12_02869 PF09695 VSVS12_02869 VSVS12_02870 PF10795 VSVS12_02870 VSVS12_02871 PF10986 VSVS12_02871 VSVS12_02872 PF00005 ABC transporter VSVS12_02874 PF01609 Transposase DDE domain VSVS12_02875 PF02687 VSVS12_02875 VSVS12_02876 PF11736 Protein of unknown function (DUF3299) VSVS12_02878 PF10987 VSVS12_02878 VSVS12_02879 PF00342 Phosphoglucose isomerase VSVS12_02880 PF01894 Uncharacterised protein family UPF0047 VSVS12_02881 PF00842 Alanine racemase, C-terminal domain VSVS12_02881 PF01168 Alanine racemase, N-terminal domain VSVS12_02882 PF00772 DnaB-like helicase N terminal domain VSVS12_02882 PF03796 DnaB-like helicase C terminal domain VSVS12_02883 PF04338 Protein of unknown function, DUF481 VSVS12_02884 PF01281 Ribosomal protein L9, N-terminal domain VSVS12_02884 PF03948 Ribosomal protein L9, C-terminal domain VSVS12_02885 PF01084 Ribosomal protein S18 VSVS12_02886 PF00436 Single-strand binding protein family VSVS12_02887 PF01250 Ribosomal protein S6 VSVS12_02888 PF00210 Ferritin-like domain VSVS12_02889 PF04324 BFD-like [2Fe-2S] binding domain VSVS12_02890 PF00009 Elongation factor Tu GTP binding domain VSVS12_02890 PF03143 Elongation factor Tu C-terminal domain VSVS12_02890 PF03144 Elongation factor Tu domain 2 VSVS12_02891 PF00009 Elongation factor Tu GTP binding domain VSVS12_02891 PF00679 Elongation factor G C-terminus VSVS12_02891 PF03144 Elongation factor Tu domain 2 VSVS12_02891 PF03764 Elongation factor G, domain IV VSVS12_02891 PF14492 Elongation Factor G, domain II VSVS12_02892 PF00177 Ribosomal protein S7p/S5e VSVS12_02893 PF00164 Ribosomal protein S12/S23 VSVS12_02894 PF04077 DsrH like protein VSVS12_02895 PF02635 DsrE/DsrF-like family VSVS12_02896 PF02635 DsrE/DsrF-like family VSVS12_02897 PF08348 VSVS12_02897 VSVS12_02897 PF13309 VSVS12_02897 VSVS12_02898 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VSVS12_02898 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VSVS12_02899 PF00400 WD domain, G-beta repeat VSVS12_02900 PF04102 SlyX VSVS12_02901 PF09838 VSVS12_02901 VSVS12_02902 PF01145 SPFH domain / Band 7 family VSVS12_02903 PF01145 SPFH domain / Band 7 family VSVS12_02903 PF12221 VSVS12_02903 VSVS12_02904 PF01926 50S ribosome-binding GTPase VSVS12_02904 PF13167 VSVS12_02904 VSVS12_02904 PF16360 VSVS12_02904 VSVS12_02905 PF17209 VSVS12_02905 VSVS12_02906 PF01715 IPP transferase VSVS12_02907 PF01119 DNA mismatch repair protein, C-terminal domain VSVS12_02907 PF08676 MutL C terminal dimerisation domain VSVS12_02907 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_02908 PF01476 LysM domain VSVS12_02908 PF01520 N-acetylmuramoyl-L-alanine amidase VSVS12_02908 PF11741 AMIN domain VSVS12_02909 PF02367 Uncharacterised P-loop hydrolase UPF0079 VSVS12_02910 PF08331 VSVS12_02910 VSVS12_02910 PF13484 VSVS12_02910 VSVS12_02923 PF00929 Exonuclease VSVS12_02924 PF03193 Protein of unknown function, DUF258 VSVS12_02925 PF02666 VSVS12_02925 VSVS12_02926 PF00939 Sodium:sulfate symporter transmembrane region VSVS12_02927 PF00892 EamA-like transporter family VSVS12_02928 PF01676 Metalloenzyme superfamily VSVS12_02928 PF06415 BPG-independent PGAM N-terminus (iPGM_N) VSVS12_02929 PF01551 Peptidase family M23 VSVS12_02931 PF00440 Bacterial regulatory proteins, tetR family VSVS12_02931 PF13972 Bacterial transcriptional repressor VSVS12_02932 PF01208 Uroporphyrinogen decarboxylase (URO-D) VSVS12_02933 PF00293 NUDIX domain VSVS12_02933 PF09297 NADH pyrophosphatase zinc ribbon domain VSVS12_02934 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ VSVS12_02935 PF00623 RNA polymerase Rpb1, domain 2 VSVS12_02935 PF04983 RNA polymerase Rpb1, domain 3 VSVS12_02935 PF04997 RNA polymerase Rpb1, domain 1 VSVS12_02935 PF04998 RNA polymerase Rpb1, domain 5 VSVS12_02935 PF05000 RNA polymerase Rpb1, domain 4 VSVS12_02936 PF00562 RNA polymerase Rpb2, domain 6 VSVS12_02936 PF04560 RNA polymerase Rpb2, domain 7 VSVS12_02936 PF04561 RNA polymerase Rpb2, domain 2 VSVS12_02936 PF04563 RNA polymerase beta subunit VSVS12_02936 PF04565 RNA polymerase Rpb2, domain 3 VSVS12_02936 PF10385 RNA polymerase beta subunit external 1 domain VSVS12_02937 PF00542 Ribosomal protein L7/L12 C-terminal domain VSVS12_02937 PF16320 VSVS12_02937 VSVS12_02938 PF00466 Ribosomal protein L10 VSVS12_02939 PF00687 Ribosomal protein L1p/L10e family VSVS12_02940 PF00298 Ribosomal protein L11, RNA binding domain VSVS12_02940 PF03946 Ribosomal protein L11, N-terminal domain VSVS12_02941 PF00467 KOW motif VSVS12_02941 PF02357 Transcription termination factor nusG VSVS12_02942 PF00584 SecE/Sec61-gamma subunits of protein translocation complex VSVS12_02943 PF00009 Elongation factor Tu GTP binding domain VSVS12_02943 PF03143 Elongation factor Tu C-terminal domain VSVS12_02943 PF03144 Elongation factor Tu domain 2 VSVS12_02948 PF00485 Phosphoribulokinase / Uridine kinase family VSVS12_02949 PF05656 VSVS12_02949 VSVS12_02950 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase VSVS12_02951 PF00121 Triosephosphate isomerase VSVS12_02952 PF01554 MatE VSVS12_02953 PF03737 Demethylmenaquinone methyltransferase VSVS12_02954 PF01040 UbiA prenyltransferase family VSVS12_02955 PF01132 Elongation factor P (EF-P) OB domain VSVS12_02955 PF08207 Elongation factor P (EF-P) KOW-like domain VSVS12_02955 PF09285 Elongation factor P, C-terminal VSVS12_02956 PF04055 Radical SAM superfamily VSVS12_02956 PF13353 4Fe-4S single cluster domain VSVS12_02957 PF07963 Prokaryotic N-terminal methylation motif VSVS12_02958 PF02308 VSVS12_02958 VSVS12_02959 PF00365 Phosphofructokinase VSVS12_02960 PF01545 Cation efflux family VSVS12_02960 PF16916 VSVS12_02960 VSVS12_02961 PF07813 LTXXQ motif family protein VSVS12_02962 PF00072 Response regulator receiver domain VSVS12_02962 PF00486 Transcriptional regulatory protein, C terminal VSVS12_02963 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_02963 PF00672 HAMP domain VSVS12_02963 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_02963 PF16527 VSVS12_02963 VSVS12_02964 PF00588 SpoU rRNA Methylase family VSVS12_02965 PF04186 VSVS12_02965 VSVS12_02966 PF00206 Lyase VSVS12_02966 PF10415 Fumarase C C-terminus VSVS12_02967 PF03605 VSVS12_02967 VSVS12_02968 PF02683 VSVS12_02968 VSVS12_02968 PF11412 Disulphide bond corrector protein DsbC VSVS12_02968 PF13899 Thioredoxin-like VSVS12_02969 PF00072 Response regulator receiver domain VSVS12_02969 PF00196 Bacterial regulatory proteins, luxR family VSVS12_02970 PF01914 VSVS12_02970 VSVS12_02971 PF13937 VSVS12_02971 VSVS12_02972 PF00474 Sodium:solute symporter family VSVS12_02974 PF00072 Response regulator receiver domain VSVS12_02974 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_02974 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_02974 PF12860 VSVS12_02974 VSVS12_02975 PF12832 MFS_1 like family VSVS12_02976 PF00027 Cyclic nucleotide-binding domain VSVS12_02976 PF00571 CBS domain VSVS12_02976 PF03445 VSVS12_02976 VSVS12_02976 PF10335 VSVS12_02976 VSVS12_02977 PF00929 Exonuclease VSVS12_02978 PF00501 AMP-binding enzyme VSVS12_02978 PF13193 AMP-binding enzyme C-terminal domain VSVS12_02978 PF16177 VSVS12_02978 VSVS12_02979 PF01220 Dehydroquinase class II VSVS12_02980 PF00364 Biotin-requiring enzyme VSVS12_02981 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain VSVS12_02981 PF02785 Biotin carboxylase C-terminal domain VSVS12_02981 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VSVS12_02982 PF06325 Ribosomal protein L11 methyltransferase (PrmA) VSVS12_02983 PF01207 Dihydrouridine synthase (Dus) VSVS12_02984 PF02954 Bacterial regulatory protein, Fis family VSVS12_02985 PF00990 GGDEF domain VSVS12_02986 PF00376 MerR family regulatory protein VSVS12_02986 PF09278 MerR, DNA binding VSVS12_02987 PF01808 AICARFT/IMPCHase bienzyme VSVS12_02987 PF02142 MGS-like domain VSVS12_02988 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VSVS12_02988 PF02843 Phosphoribosylglycinamide synthetase, C domain VSVS12_02988 PF02844 Phosphoribosylglycinamide synthetase, N domain VSVS12_02989 PF07356 VSVS12_02989 VSVS12_02990 PF00216 Bacterial DNA-binding protein VSVS12_02991 PF00571 CBS domain VSVS12_02991 PF01595 VSVS12_02991 VSVS12_02992 PF04222 Protein of unknown function (DUF416) VSVS12_02993 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VSVS12_02994 PF03167 Uracil DNA glycosylase superfamily VSVS12_03010 PF00076 RNA recognition motif VSVS12_03011 PF01177 Asp/Glu/Hydantoin racemase VSVS12_03012 PF01902 ATP-binding region VSVS12_03013 PF00593 TonB dependent receptor VSVS12_03013 PF07715 TonB-dependent Receptor Plug Domain VSVS12_03014 PF05958 tRNA (Uracil-5-)-methyltransferase VSVS12_03015 PF07226 VSVS12_03015 VSVS12_03018 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS12_03019 PF00583 Acetyltransferase (GNAT) family VSVS12_03020 PF07238 PilZ domain VSVS12_03020 PF12945 Flagellar protein YcgR VSVS12_03021 PF04018 VSVS12_03021 VSVS12_03022 PF00005 ABC transporter VSVS12_03022 PF00664 ABC transporter transmembrane region VSVS12_03024 PF01037 AsnC family VSVS12_03024 PF13412 Winged helix-turn-helix DNA-binding VSVS12_03026 PF00474 Sodium:solute symporter family VSVS12_03028 PF00171 Aldehyde dehydrogenase family VSVS12_03028 PF01619 Proline dehydrogenase VSVS12_03028 PF14850 DNA-binding domain of Proline dehydrogenase VSVS12_03029 PF12833 Helix-turn-helix domain VSVS12_03030 PF08308 VSVS12_03030 VSVS12_03031 PF03781 Sulfatase-modifying factor enzyme 1 VSVS12_03031 PF08308 VSVS12_03031 VSVS12_03032 PF00196 Bacterial regulatory proteins, luxR family VSVS12_03032 PF08448 PAS fold VSVS12_03033 PF01243 Pyridoxamine 5'-phosphate oxidase VSVS12_03033 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region VSVS12_03035 PF13437 HlyD family secretion protein VSVS12_03035 PF13533 Biotin-lipoyl like VSVS12_03036 PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP VSVS12_03037 PF00563 EAL domain VSVS12_03037 PF00990 GGDEF domain VSVS12_03037 PF16448 VSVS12_03037 VSVS12_03038 PF00005 ABC transporter VSVS12_03038 PF00664 ABC transporter transmembrane region VSVS12_03039 PF09829 VSVS12_03039 VSVS12_03040 PF13302 Acetyltransferase (GNAT) domain VSVS12_03042 PF02630 SCO1/SenC VSVS12_03043 PF04314 Protein of unknown function (DUF461) VSVS12_03044 PF03193 Protein of unknown function, DUF258 VSVS12_03045 PF00375 Sodium:dicarboxylate symporter family VSVS12_03046 PF08238 Sel1 repeat VSVS12_03047 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VSVS12_03048 PF06942 VSVS12_03048 VSVS12_03051 PF00175 Oxidoreductase NAD-binding domain VSVS12_03051 PF00970 Oxidoreductase FAD-binding domain VSVS12_03053 PF00561 alpha/beta hydrolase fold VSVS12_03054 PF00472 RF-1 domain VSVS12_03057 PF01047 MarR family VSVS12_03058 PF01292 Prokaryotic cytochrome b561 VSVS12_03059 PF01322 Cytochrome C' VSVS12_03061 PF08241 Methyltransferase domain VSVS12_03062 PF02639 VSVS12_03062 VSVS12_03063 PF00375 Sodium:dicarboxylate symporter family VSVS12_03064 PF06803 VSVS12_03064 VSVS12_03065 PF01546 Peptidase family M20/M25/M40 VSVS12_03065 PF07687 Peptidase dimerisation domain VSVS12_03066 PF07670 Nucleoside recognition VSVS12_03067 PF07670 Nucleoside recognition VSVS12_03068 PF03600 Citrate transporter VSVS12_03070 PF00270 DEAD/DEAH box helicase VSVS12_03070 PF00271 Helicase conserved C-terminal domain VSVS12_03072 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VSVS12_03072 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain VSVS12_03073 PF00730 HhH-GPD superfamily base excision DNA repair protein VSVS12_03073 PF02805 Metal binding domain of Ada VSVS12_03073 PF06029 AlkA N-terminal domain VSVS12_03073 PF12833 Helix-turn-helix domain VSVS12_03075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_03075 PF03466 LysR substrate binding domain VSVS12_03076 PF04219 VSVS12_03076 VSVS12_03077 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VSVS12_03078 PF00491 Arginase family VSVS12_03080 PF00939 Sodium:sulfate symporter transmembrane region VSVS12_03081 PF12146 Putative lysophospholipase VSVS12_03082 PF00440 Bacterial regulatory proteins, tetR family VSVS12_03083 PF01757 VSVS12_03083 VSVS12_03085 PF01124 MAPEG family VSVS12_03086 PF00128 Alpha amylase, catalytic domain VSVS12_03086 PF02806 Alpha amylase, C-terminal all-beta domain VSVS12_03086 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VSVS12_03087 PF02446 4-alpha-glucanotransferase VSVS12_03088 PF00343 Carbohydrate phosphorylase VSVS12_03089 PF00196 Bacterial regulatory proteins, luxR family VSVS12_03090 PF00881 Nitroreductase family VSVS12_03092 PF00704 Glycosyl hydrolases family 18 VSVS12_03092 PF16403 VSVS12_03092 VSVS12_03093 PF00561 alpha/beta hydrolase fold VSVS12_03094 PF02112 VSVS12_03094 VSVS12_03095 PF00367 phosphotransferase system, EIIB VSVS12_03096 PF00232 Glycosyl hydrolase family 1 VSVS12_03097 PF03083 Sugar efflux transporter for intercellular exchange VSVS12_03098 PF00583 Acetyltransferase (GNAT) family VSVS12_03100 PF04170 NlpE N-terminal domain VSVS12_03101 PF05433 VSVS12_03101 VSVS12_03103 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VSVS12_03103 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VSVS12_03104 PF02653 VSVS12_03104 VSVS12_03105 PF02653 VSVS12_03105 VSVS12_03106 PF00005 ABC transporter VSVS12_03107 PF13407 Periplasmic binding protein domain VSVS12_03108 PF01794 VSVS12_03108 VSVS12_03108 PF08022 VSVS12_03108 VSVS12_03109 PF00034 Cytochrome c VSVS12_03109 PF03150 Di-haem cytochrome c peroxidase VSVS12_03110 PF13673 Acetyltransferase (GNAT) domain VSVS12_03111 PF13411 MerR HTH family regulatory protein VSVS12_03111 PF13649 Methyltransferase domain VSVS12_03112 PF00080 Copper/zinc superoxide dismutase (SODC) VSVS12_03113 PF01610 VSVS12_03113 VSVS12_03113 PF13542 VSVS12_03113 VSVS12_03114 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_03114 PF03466 LysR substrate binding domain VSVS12_03115 PF05232 VSVS12_03115 VSVS12_03116 PF03199 Eukaryotic glutathione synthase VSVS12_03116 PF03917 Eukaryotic glutathione synthase, ATP binding domain VSVS12_03118 PF13265 VSVS12_03118 VSVS12_03119 PF01103 Surface antigen VSVS12_03120 PF11964 SpoIIAA-like VSVS12_03122 PF01027 Inhibitor of apoptosis-promoting Bax1 VSVS12_03123 PF03831 PhnA protein VSVS12_03123 PF08274 PhnA Zinc-Ribbon VSVS12_03124 PF00302 Chloramphenicol acetyltransferase VSVS12_03125 PF13505 Outer membrane protein beta-barrel domain VSVS12_03126 PF00873 AcrB/AcrD/AcrF family VSVS12_03127 PF00529 HlyD family secretion protein VSVS12_03127 PF13533 Biotin-lipoyl like VSVS12_03127 PF16576 VSVS12_03127 VSVS12_03128 PF09905 Uncharacterized conserved protein (DUF2132) VSVS12_03129 PF08238 Sel1 repeat VSVS12_03130 PF04266 ASCH domain VSVS12_03131 PF04303 PrpF protein VSVS12_03132 PF00330 Aconitase family (aconitate hydratase) VSVS12_03132 PF00694 Aconitase C-terminal domain VSVS12_03133 PF00285 Citrate synthase VSVS12_03134 PF13714 Phosphoenolpyruvate phosphomutase VSVS12_03135 PF00392 Bacterial regulatory proteins, gntR family VSVS12_03135 PF07729 FCD domain VSVS12_03137 PF08803 Putative mono-oxygenase ydhR VSVS12_03138 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_03138 PF03466 LysR substrate binding domain VSVS12_03140 PF01344 Kelch motif VSVS12_03141 PF01380 SIS domain VSVS12_03141 PF01418 Helix-turn-helix domain, rpiR family VSVS12_03142 PF00701 Dihydrodipicolinate synthetase family VSVS12_03143 PF06808 VSVS12_03143 VSVS12_03144 PF04290 VSVS12_03144 VSVS12_03145 PF03480 Bacterial extracellular solute-binding protein, family 7 VSVS12_03146 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase VSVS12_03147 PF00480 ROK family VSVS12_03148 PF01979 Amidohydrolase family VSVS12_03151 PF09992 Predicted periplasmic protein (DUF2233) VSVS12_03152 PF04076 Bacterial OB fold (BOF) protein VSVS12_03153 PF00199 Catalase VSVS12_03153 PF06628 Catalase-related immune-responsive VSVS12_03154 PF03222 Tryptophan/tyrosine permease family VSVS12_03155 PF03222 Tryptophan/tyrosine permease family VSVS12_03157 PF00367 phosphotransferase system, EIIB VSVS12_03157 PF02378 Phosphotransferase system, EIIC VSVS12_03158 PF01546 Peptidase family M20/M25/M40 VSVS12_03159 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VSVS12_03160 PF00456 Transketolase, thiamine diphosphate binding domain VSVS12_03160 PF02779 Transketolase, pyrimidine binding domain VSVS12_03160 PF02780 Transketolase, C-terminal domain VSVS12_03161 PF00923 Transaldolase VSVS12_03162 PF13419 Haloacid dehalogenase-like hydrolase VSVS12_03163 PF00465 Iron-containing alcohol dehydrogenase VSVS12_03164 PF00834 Ribulose-phosphate 3 epimerase family VSVS12_03165 PF08282 haloacid dehalogenase-like hydrolase VSVS12_03166 PF00455 VSVS12_03166 VSVS12_03166 PF08220 DeoR-like helix-turn-helix domain VSVS12_03167 PF13557 VSVS12_03167 VSVS12_03169 PF03412 Peptidase C39 family VSVS12_03173 PF00196 Bacterial regulatory proteins, luxR family VSVS12_03174 PF10928 Protein of unknown function (DUF2810) VSVS12_03175 PF14247 VSVS12_03175 VSVS12_03176 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_03176 PF17200 VSVS12_03176 VSVS12_03177 PF05656 VSVS12_03177 VSVS12_03178 PF12847 Methyltransferase domain VSVS12_03179 PF04170 NlpE N-terminal domain VSVS12_03180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_03180 PF03466 LysR substrate binding domain VSVS12_03181 PF16576 VSVS12_03181 VSVS12_03182 PF11168 VSVS12_03182 VSVS12_03183 PF01709 Transcriptional regulator VSVS12_03184 PF11686 VSVS12_03184 VSVS12_03186 PF00005 ABC transporter VSVS12_03186 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VSVS12_03187 PF00005 ABC transporter VSVS12_03187 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VSVS12_03189 PF11826 VSVS12_03189 VSVS12_03190 PF13614 AAA domain VSVS12_03191 PF02195 ParB-like nuclease domain VSVS12_03193 PF01610 VSVS12_03193 VSVS12_03193 PF13542 VSVS12_03193 VSVS12_03194 PF05127 Helicase VSVS12_03194 PF08351 Domain of unknown function (DUF1726) VSVS12_03194 PF13718 GNAT acetyltransferase 2 VSVS12_03195 PF01740 STAS domain VSVS12_03196 PF00072 Response regulator receiver domain VSVS12_03196 PF07228 Stage II sporulation protein E (SpoIIE) VSVS12_03196 PF13581 Histidine kinase-like ATPase domain VSVS12_03197 PF01228 Glycine radical VSVS12_03197 PF02901 Pyruvate formate lyase VSVS12_03198 PF00239 Resolvase, N terminal domain VSVS12_03198 PF13384 Homeodomain-like domain VSVS12_03199 PF07690 Major Facilitator Superfamily VSVS12_03201 PF03406 VSVS12_03201 VSVS12_03201 PF12571 VSVS12_03201 VSVS12_03202 PF09684 VSVS12_03202 VSVS12_03203 PF01609 Transposase DDE domain VSVS12_03205 PF10145 VSVS12_03205 VSVS12_03206 PF01609 Transposase DDE domain VSVS12_03208 PF01555 DNA methylase VSVS12_03210 PF04245 VSVS12_03210 VSVS12_03212 PF04233 VSVS12_03212 VSVS12_03213 PF06074 VSVS12_03213 VSVS12_03215 PF03864 Phage major capsid protein E VSVS12_03219 PF04985 VSVS12_03219 VSVS12_03222 PF04965 Gene 25-like lysozyme VSVS12_03223 PF04717 Phage-related baseplate assembly protein VSVS12_03225 PF11985 VSVS12_03225 VSVS12_03228 PF06995 VSVS12_03228 VSVS12_03229 PF05489 Phage Tail Protein X VSVS12_03231 PF04865 VSVS12_03231 VSVS12_03237 PF06252 VSVS12_03237 VSVS12_03248 PF11363 VSVS12_03248 VSVS12_03252 PF09077 Mu B transposition protein, C terminal VSVS12_03252 PF13401 AAA domain VSVS12_03253 PF02316 Mu DNA-binding domain VSVS12_03253 PF02914 Bacteriophage Mu transposase VSVS12_03253 PF09039 Mu DNA binding, I gamma subdomain VSVS12_03253 PF09299 Mu transposase, C-terminal VSVS12_03254 PF13693 Winged helix-turn-helix DNA-binding VSVS12_03255 PF00717 Peptidase S24-like VSVS12_03255 PF01381 Helix-turn-helix VSVS12_03256 PF00999 Sodium/hydrogen exchanger family VSVS12_03256 PF02254 TrkA-N domain VSVS12_03257 PF13673 Acetyltransferase (GNAT) domain VSVS12_03259 PF13316 VSVS12_03259 VSVS12_03261 PF07007 Protein of unknown function (DUF1311) VSVS12_03262 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VSVS12_03264 PF13316 VSVS12_03264 VSVS12_03265 PF01910 Domain of unknown function DUF77 VSVS12_03266 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VSVS12_03267 PF00293 NUDIX domain VSVS12_03272 PF01553 Acyltransferase VSVS12_03273 PF01148 Cytidylyltransferase family VSVS12_03274 PF01066 CDP-alcohol phosphatidyltransferase VSVS12_03279 PF07007 Protein of unknown function (DUF1311) VSVS12_03283 PF03206 VSVS12_03283 VSVS12_03284 PF03961 VSVS12_03284 VSVS12_03285 PF13358 DDE superfamily endonuclease VSVS12_03286 PF13551 Winged helix-turn helix VSVS12_03286 PF13592 VSVS12_03286 VSVS12_03287 PF00440 Bacterial regulatory proteins, tetR family VSVS12_03287 PF02909 Tetracyclin repressor, C-terminal all-alpha domain VSVS12_03288 PF01872 RibD C-terminal domain VSVS12_03289 PF01614 Bacterial transcriptional regulator VSVS12_03289 PF09339 IclR helix-turn-helix domain VSVS12_03292 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_03292 PF03466 LysR substrate binding domain VSVS12_03293 PF08543 Phosphomethylpyrimidine kinase VSVS12_03294 PF01569 PAP2 superfamily VSVS12_03295 PF03773 VSVS12_03295 VSVS12_03297 PF01609 Transposase DDE domain VSVS12_03298 PF00455 VSVS12_03298 VSVS12_03298 PF08220 DeoR-like helix-turn-helix domain VSVS12_03299 PF00465 Iron-containing alcohol dehydrogenase VSVS12_03300 PF01609 Transposase DDE domain VSVS12_03301 PF00465 Iron-containing alcohol dehydrogenase VSVS12_03302 PF00596 Class II Aldolase and Adducin N-terminal domain VSVS12_03303 PF03553 VSVS12_03303 VSVS12_03304 PF01008 Initiation factor 2 subunit family VSVS12_03305 PF01636 Phosphotransferase enzyme family VSVS12_03306 PF03553 VSVS12_03306 VSVS12_03307 PF01609 Transposase DDE domain VSVS12_03308 PF00583 Acetyltransferase (GNAT) family VSVS12_03309 PF16691 VSVS12_03309 VSVS12_03311 PF12840 Helix-turn-helix domain VSVS12_03312 PF04542 Sigma-70 region 2 VSVS12_03312 PF08281 Sigma-70, region 4 VSVS12_03313 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_03313 PF00672 HAMP domain VSVS12_03314 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VSVS12_03316 PF13560 Helix-turn-helix domain VSVS12_03317 PF04828 Glutathione-dependent formaldehyde-activating enzyme VSVS12_03318 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_03319 PF00929 Exonuclease VSVS12_03320 PF02579 Dinitrogenase iron-molybdenum cofactor VSVS12_03321 PF04400 VSVS12_03321 VSVS12_03322 PF02001 VSVS12_03322 VSVS12_03323 PF03061 Thioesterase superfamily VSVS12_03324 PF03473 MOSC domain VSVS12_03324 PF03475 3-alpha domain VSVS12_03325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_03325 PF03466 LysR substrate binding domain VSVS12_03326 PF13472 GDSL-like Lipase/Acylhydrolase family VSVS12_03327 PF07702 UTRA domain VSVS12_03328 PF13489 Methyltransferase domain VSVS12_03329 PF01554 MatE VSVS12_03330 PF00583 Acetyltransferase (GNAT) family VSVS12_03332 PF01418 Helix-turn-helix domain, rpiR family VSVS12_03333 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VSVS12_03333 PF02378 Phosphotransferase system, EIIC VSVS12_03334 PF01074 Glycosyl hydrolases family 38 N-terminal domain VSVS12_03334 PF07748 Glycosyl hydrolases family 38 C-terminal domain VSVS12_03334 PF09261 Alpha mannosidase, middle domain VSVS12_03335 PF00128 Alpha amylase, catalytic domain VSVS12_03336 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VSVS12_03337 PF01238 Phosphomannose isomerase type I VSVS12_03338 PF00465 Iron-containing alcohol dehydrogenase VSVS12_03340 PF07883 Cupin domain VSVS12_03341 PF12710 haloacid dehalogenase-like hydrolase VSVS12_03342 PF03819 MazG nucleotide pyrophosphohydrolase domain VSVS12_03343 PF00797 N-acetyltransferase VSVS12_03344 PF03358 NADPH-dependent FMN reductase VSVS12_03345 PF12799 Leucine Rich repeats (2 copies) VSVS12_03346 PF11066 VSVS12_03346 VSVS12_03349 PF00005 ABC transporter VSVS12_03349 PF00571 CBS domain VSVS12_03350 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_03351 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VSVS12_03352 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VSVS12_03352 PF12793 VSVS12_03352 VSVS12_03353 PF09335 VSVS12_03353 VSVS12_03354 PF13520 Amino acid permease VSVS12_03355 PF01276 Orn/Lys/Arg decarboxylase, major domain VSVS12_03355 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VSVS12_03355 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VSVS12_03356 PF03358 NADPH-dependent FMN reductase VSVS12_03357 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_03357 PF03466 LysR substrate binding domain VSVS12_03358 PF01773 Na+ dependent nucleoside transporter N-terminus VSVS12_03358 PF07662 Na+ dependent nucleoside transporter C-terminus VSVS12_03358 PF07670 Nucleoside recognition VSVS12_03359 PF00270 DEAD/DEAH box helicase VSVS12_03359 PF00271 Helicase conserved C-terminal domain VSVS12_03360 PF13520 Amino acid permease VSVS12_03361 PF04960 Glutaminase VSVS12_03362 PF00282 Pyridoxal-dependent decarboxylase conserved domain VSVS12_03363 PF03458 VSVS12_03363 VSVS12_03364 PF05163 DinB family VSVS12_03366 PF00892 EamA-like transporter family VSVS12_03367 PF01161 Phosphatidylethanolamine-binding protein VSVS12_03369 PF10101 VSVS12_03369 VSVS12_03370 PF13443 Cro/C1-type HTH DNA-binding domain VSVS12_03371 PF11188 VSVS12_03371 VSVS12_03374 PF03313 VSVS12_03374 VSVS12_03375 PF00990 GGDEF domain VSVS12_03375 PF13426 PAS domain VSVS12_03375 PF17152 VSVS12_03375 VSVS12_03376 PF13689 VSVS12_03376 VSVS12_03377 PF00593 TonB dependent receptor VSVS12_03378 PF07715 TonB-dependent Receptor Plug Domain VSVS12_03379 PF06445 GyrI-like small molecule binding domain VSVS12_03379 PF12833 Helix-turn-helix domain VSVS12_03380 PF00155 Aminotransferase class I and II VSVS12_03381 PF01292 Prokaryotic cytochrome b561 VSVS12_03382 PF12710 haloacid dehalogenase-like hydrolase VSVS12_03383 PF00005 ABC transporter VSVS12_03383 PF08402 TOBE domain VSVS12_03384 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_03385 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_03386 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase VSVS12_03387 PF13343 Bacterial extracellular solute-binding protein VSVS12_03388 PF00392 Bacterial regulatory proteins, gntR family VSVS12_03388 PF07702 UTRA domain VSVS12_03389 PF11215 VSVS12_03389 VSVS12_03391 PF13484 VSVS12_03391 VSVS12_03391 PF13486 VSVS12_03391 VSVS12_03392 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_03392 PF03466 LysR substrate binding domain VSVS12_03393 PF04205 FMN-binding domain VSVS12_03393 PF12801 VSVS12_03393 VSVS12_03395 PF02253 Phospholipase A1 VSVS12_03396 PF07690 Major Facilitator Superfamily VSVS12_03397 PF00529 HlyD family secretion protein VSVS12_03397 PF16576 VSVS12_03397 VSVS12_03399 PF00892 EamA-like transporter family VSVS12_03400 PF02311 AraC-like ligand binding domain VSVS12_03400 PF12833 Helix-turn-helix domain VSVS12_03402 PF04205 FMN-binding domain VSVS12_03402 PF12801 VSVS12_03402 VSVS12_03404 PF10518 TAT (twin-arginine translocation) pathway signal sequence VSVS12_03404 PF12838 4Fe-4S dicluster domain VSVS12_03404 PF13486 VSVS12_03404 VSVS12_03405 PF13181 Tetratricopeptide repeat VSVS12_03406 PF02311 AraC-like ligand binding domain VSVS12_03406 PF12833 Helix-turn-helix domain VSVS12_03407 PF01810 VSVS12_03407 VSVS12_03408 PF00005 ABC transporter VSVS12_03408 PF12848 ABC transporter VSVS12_03409 PF09905 Uncharacterized conserved protein (DUF2132) VSVS12_03410 PF03616 VSVS12_03410 VSVS12_03411 PF00990 GGDEF domain VSVS12_03412 PF11042 VSVS12_03412 VSVS12_03413 PF00588 SpoU rRNA Methylase family VSVS12_03415 PF13306 Leucine rich repeats (6 copies) VSVS12_03417 PF13302 Acetyltransferase (GNAT) domain VSVS12_03418 PF00171 Aldehyde dehydrogenase family VSVS12_03419 PF02355 Protein export membrane protein VSVS12_03419 PF07549 SecD/SecF GG Motif VSVS12_03420 PF02355 Protein export membrane protein VSVS12_03420 PF07549 SecD/SecF GG Motif VSVS12_03420 PF13721 SecD export protein N-terminal TM region VSVS12_03422 PF01432 Peptidase family M3 VSVS12_03423 PF01163 RIO1 family VSVS12_03424 PF00128 Alpha amylase, catalytic domain VSVS12_03424 PF02806 Alpha amylase, C-terminal all-beta domain VSVS12_03425 PF13347 MFS/sugar transport protein VSVS12_03427 PF08282 haloacid dehalogenase-like hydrolase VSVS12_03428 PF03992 Antibiotic biosynthesis monooxygenase VSVS12_03429 PF01965 DJ-1/PfpI family VSVS12_03429 PF12833 Helix-turn-helix domain VSVS12_03430 PF00581 Rhodanese-like domain VSVS12_03432 PF07690 Major Facilitator Superfamily VSVS12_03433 PF01925 VSVS12_03433 VSVS12_03434 PF03733 VSVS12_03434 VSVS12_03436 PF00990 GGDEF domain VSVS12_03437 PF00128 Alpha amylase, catalytic domain VSVS12_03437 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VSVS12_03438 PF00144 Beta-lactamase VSVS12_03440 PF13416 Bacterial extracellular solute-binding protein VSVS12_03441 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_03442 PF00072 Response regulator receiver domain VSVS12_03442 PF00486 Transcriptional regulatory protein, C terminal VSVS12_03444 PF00376 MerR family regulatory protein VSVS12_03444 PF09278 MerR, DNA binding VSVS12_03445 PF03547 VSVS12_03445 VSVS12_03446 PF01734 Patatin-like phospholipase VSVS12_03447 PF13671 AAA domain VSVS12_03448 PF00005 ABC transporter VSVS12_03451 PF01609 Transposase DDE domain VSVS12_03452 PF00990 GGDEF domain VSVS12_03453 PF00990 GGDEF domain VSVS12_03454 PF00072 Response regulator receiver domain VSVS12_03454 PF00486 Transcriptional regulatory protein, C terminal VSVS12_03455 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_03455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_03456 PF06123 VSVS12_03456 VSVS12_03457 PF10990 VSVS12_03457 VSVS12_03458 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS12_03459 PF00258 Flavodoxin VSVS12_03459 PF00301 Rubredoxin VSVS12_03459 PF00753 Metallo-beta-lactamase superfamily VSVS12_03460 PF00158 Sigma-54 interaction domain VSVS12_03460 PF01590 GAF domain VSVS12_03461 PF14027 VSVS12_03461 VSVS12_03463 PF11212 VSVS12_03463 VSVS12_03464 PF04325 Protein of unknown function (DUF465) VSVS12_03465 PF07661 VSVS12_03465 VSVS12_03466 PF07661 VSVS12_03466 VSVS12_03468 PF00860 Permease family VSVS12_03469 PF01979 Amidohydrolase family VSVS12_03470 PF03382 VSVS12_03470 VSVS12_03472 PF04295 VSVS12_03472 VSVS12_03473 PF00892 EamA-like transporter family VSVS12_03474 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain VSVS12_03474 PF13378 Enolase C-terminal domain-like VSVS12_03475 PF01258 Prokaryotic dksA/traR C4-type zinc finger VSVS12_03476 PF00571 CBS domain VSVS12_03476 PF01595 VSVS12_03476 VSVS12_03476 PF03471 Transporter associated domain VSVS12_03477 PF00571 CBS domain VSVS12_03477 PF01595 VSVS12_03477 VSVS12_03479 PF12833 Helix-turn-helix domain VSVS12_03480 PF07690 Major Facilitator Superfamily VSVS12_03481 PF00753 Metallo-beta-lactamase superfamily VSVS12_03481 PF14863 Alkyl sulfatase dimerisation VSVS12_03481 PF14864 Alkyl sulfatase C-terminal VSVS12_03482 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_03482 PF03466 LysR substrate binding domain VSVS12_03486 PF00924 Mechanosensitive ion channel VSVS12_03487 PF11012 VSVS12_03487 VSVS12_03488 PF06865 Protein of unknown function (DUF1255) VSVS12_03490 PF00990 GGDEF domain VSVS12_03491 PF12060 VSVS12_03491 VSVS12_03492 PF13532 2OG-Fe(II) oxygenase superfamily VSVS12_03493 PF00990 GGDEF domain VSVS12_03493 PF03924 CHASE domain VSVS12_03494 PF01609 Transposase DDE domain VSVS12_03495 PF00990 GGDEF domain VSVS12_03496 PF01610 VSVS12_03496 VSVS12_03496 PF13542 VSVS12_03496 VSVS12_03497 PF01381 Helix-turn-helix VSVS12_03497 PF06114 Domain of unknown function (DUF955) VSVS12_03497 PF12268 VSVS12_03497 VSVS12_03499 PF07073 Modulator of Rho-dependent transcription termination (ROF) VSVS12_03500 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VSVS12_03501 PF01810 VSVS12_03501 VSVS12_03502 PF06041 Bacterial protein of unknown function (DUF924) VSVS12_03505 PF11216 VSVS12_03505 VSVS12_03506 PF05025 RbsD / FucU transport protein family VSVS12_03507 PF00294 pfkB family carbohydrate kinase VSVS12_03508 PF07690 Major Facilitator Superfamily VSVS12_03509 PF14486 Domain of unknown function (DUF4432) VSVS12_03510 PF00294 pfkB family carbohydrate kinase VSVS12_03511 PF00356 Bacterial regulatory proteins, lacI family VSVS12_03511 PF13377 Periplasmic binding protein-like domain VSVS12_03512 PF13729 VSVS12_03512 VSVS12_03513 PF16868 VSVS12_03513 VSVS12_03514 PF06808 VSVS12_03514 VSVS12_03515 PF00270 DEAD/DEAH box helicase VSVS12_03515 PF00271 Helicase conserved C-terminal domain VSVS12_03515 PF03880 DbpA RNA binding domain VSVS12_03517 PF00575 S1 RNA binding domain VSVS12_03517 PF00773 RNB domain VSVS12_03517 PF08206 Ribonuclease B OB domain VSVS12_03519 PF03061 Thioesterase superfamily VSVS12_03521 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VSVS12_03521 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VSVS12_03522 PF00072 Response regulator receiver domain VSVS12_03522 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_03522 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_03523 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VSVS12_03524 PF07969 Amidohydrolase family VSVS12_03525 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin VSVS12_03526 PF00127 Copper binding proteins, plastocyanin/azurin family VSVS12_03527 PF01979 Amidohydrolase family VSVS12_03528 PF00111 2Fe-2S iron-sulfur cluster binding domain VSVS12_03528 PF00175 Oxidoreductase NAD-binding domain VSVS12_03528 PF00970 Oxidoreductase FAD-binding domain VSVS12_03528 PF03473 MOSC domain VSVS12_03528 PF03476 MOSC N-terminal beta barrel domain VSVS12_03529 PF00892 EamA-like transporter family VSVS12_03530 PF12833 Helix-turn-helix domain VSVS12_03531 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_03533 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VSVS12_03534 PF00128 Alpha amylase, catalytic domain VSVS12_03536 PF01553 Acyltransferase VSVS12_03538 PF04175 Protein of unknown function (DUF406) VSVS12_03540 PF00072 Response regulator receiver domain VSVS12_03541 PF00989 PAS fold VSVS12_03542 PF01256 Carbohydrate kinase VSVS12_03542 PF03853 YjeF-related protein N-terminus VSVS12_03543 PF00478 IMP dehydrogenase / GMP reductase domain VSVS12_03544 PF00989 PAS fold VSVS12_03544 PF14501 GHKL domain VSVS12_03544 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VSVS12_03544 PF17203 VSVS12_03544 VSVS12_03545 PF00072 Response regulator receiver domain VSVS12_03546 PF01970 VSVS12_03546 VSVS12_03547 PF07331 VSVS12_03547 VSVS12_03548 PF03401 Tripartite tricarboxylate transporter family receptor VSVS12_03550 PF09234 Domain of unknown function (DUF1963) VSVS12_03551 PF13561 Enoyl-(Acyl carrier protein) reductase VSVS12_03552 PF00939 Sodium:sulfate symporter transmembrane region VSVS12_03553 PF00027 Cyclic nucleotide-binding domain VSVS12_03553 PF00571 CBS domain VSVS12_03553 PF03445 VSVS12_03553 VSVS12_03553 PF10335 VSVS12_03553 VSVS12_03554 PF00929 Exonuclease VSVS12_03555 PF02028 BCCT family transporter VSVS12_03556 PF00072 Response regulator receiver domain VSVS12_03556 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_03556 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_03557 PF11329 VSVS12_03557 VSVS12_03559 PF00005 ABC transporter VSVS12_03559 PF00664 ABC transporter transmembrane region VSVS12_03560 PF13437 HlyD family secretion protein VSVS12_03562 PF00353 Hemolysin-type calcium-binding repeat (2 copies) VSVS12_03564 PF00072 Response regulator receiver domain VSVS12_03564 PF07228 Stage II sporulation protein E (SpoIIE) VSVS12_03565 PF01740 STAS domain VSVS12_03566 PF00132 Bacterial transferase hexapeptide (six repeats) VSVS12_03566 PF00483 Nucleotidyl transferase VSVS12_03567 PF13581 Histidine kinase-like ATPase domain VSVS12_03568 PF00535 Glycosyl transferase family 2 VSVS12_03569 PF11329 VSVS12_03569 VSVS12_03570 PF11329 VSVS12_03570 VSVS12_03571 PF11329 VSVS12_03571 VSVS12_03573 PF00722 Glycosyl hydrolases family 16 VSVS12_03576 PF00072 Response regulator receiver domain VSVS12_03577 PF01545 Cation efflux family VSVS12_03578 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_03578 PF03466 LysR substrate binding domain VSVS12_03579 PF13489 Methyltransferase domain VSVS12_03580 PF00501 AMP-binding enzyme VSVS12_03581 PF00351 Biopterin-dependent aromatic amino acid hydroxylase VSVS12_03582 PF01329 Pterin 4 alpha carbinolamine dehydratase VSVS12_03584 PF13419 Haloacid dehalogenase-like hydrolase VSVS12_03585 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VSVS12_03585 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VSVS12_03585 PF04324 BFD-like [2Fe-2S] binding domain VSVS12_03585 PF07992 Pyridine nucleotide-disulphide oxidoreductase VSVS12_03586 PF13806 Rieske-like [2Fe-2S] domain VSVS12_03587 PF01226 Formate/nitrite transporter VSVS12_03588 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VSVS12_03589 PF13487 HD domain VSVS12_03591 PF01936 NYN domain VSVS12_03592 PF11661 VSVS12_03592 VSVS12_03593 PF11777 VSVS12_03593 VSVS12_03594 PF00854 POT family VSVS12_03595 PF03313 VSVS12_03595 VSVS12_03595 PF03315 Serine dehydratase beta chain VSVS12_03596 PF02698 DUF218 domain VSVS12_03597 PF03891 VSVS12_03597 VSVS12_03598 PF00990 GGDEF domain VSVS12_03599 PF00072 Response regulator receiver domain VSVS12_03599 PF01584 CheW-like domain VSVS12_03600 PF13616 PPIC-type PPIASE domain VSVS12_03601 PF03279 VSVS12_03601 VSVS12_03602 PF00034 Cytochrome c VSVS12_03603 PF01212 Beta-eliminating lyase VSVS12_03604 PF00293 NUDIX domain VSVS12_03605 PF07728 AAA domain (dynein-related subfamily) VSVS12_03605 PF12592 Protein of unknown function (DUF3763) VSVS12_03606 PF05762 VWA domain containing CoxE-like protein VSVS12_03607 PF00892 EamA-like transporter family VSVS12_03608 PF01047 MarR family VSVS12_03609 PF04237 YjbR VSVS12_03615 PF03590 Aspartate-ammonia ligase VSVS12_03616 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_03616 PF08447 PAS fold VSVS12_03620 PF13778 VSVS12_03620 VSVS12_03621 PF11756 VSVS12_03621 VSVS12_03622 PF07690 Major Facilitator Superfamily VSVS12_03623 PF00085 Thioredoxin VSVS12_03624 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VSVS12_03624 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VSVS12_03625 PF00149 Calcineurin-like phosphoesterase VSVS12_03625 PF12320 Type 5 capsule protein repressor C-terminal domain VSVS12_03626 PF13555 P-loop containing region of AAA domain VSVS12_03626 PF13558 Putative exonuclease SbcCD, C subunit VSVS12_03627 PF00072 Response regulator receiver domain VSVS12_03627 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_03628 PF03595 Voltage-dependent anion channel VSVS12_03629 PF00654 Voltage gated chloride channel VSVS12_03630 PF02492 CobW/HypB/UreG, nucleotide-binding domain VSVS12_03631 PF01926 50S ribosome-binding GTPase VSVS12_03632 PF02754 VSVS12_03632 VSVS12_03632 PF13183 4Fe-4S dicluster domain VSVS12_03633 PF00890 FAD binding domain VSVS12_03634 PF01266 FAD dependent oxidoreductase VSVS12_03634 PF04324 BFD-like [2Fe-2S] binding domain VSVS12_03635 PF07690 Major Facilitator Superfamily VSVS12_03636 PF03009 Glycerophosphoryl diester phosphodiesterase family VSVS12_03637 PF00455 VSVS12_03637 VSVS12_03637 PF08220 DeoR-like helix-turn-helix domain VSVS12_03638 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VSVS12_03638 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VSVS12_03639 PF00230 Major intrinsic protein VSVS12_03640 PF03605 VSVS12_03640 VSVS12_03641 PF01292 Prokaryotic cytochrome b561 VSVS12_03642 PF08768 Domain of unknown function (DUF1794) VSVS12_03644 PF11140 VSVS12_03644 VSVS12_03645 PF11140 VSVS12_03645 VSVS12_03648 PF01609 Transposase DDE domain VSVS12_03650 PF01609 Transposase DDE domain VSVS12_03651 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_03651 PF03466 LysR substrate binding domain VSVS12_03653 PF00155 Aminotransferase class I and II VSVS12_03654 PF00107 Zinc-binding dehydrogenase VSVS12_03654 PF08240 Alcohol dehydrogenase GroES-like domain VSVS12_03657 PF00353 Hemolysin-type calcium-binding repeat (2 copies) VSVS12_03657 PF08548 Peptidase M10 serralysin C terminal VSVS12_03660 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VSVS12_03661 PF00501 AMP-binding enzyme VSVS12_03661 PF13193 AMP-binding enzyme C-terminal domain VSVS12_03664 PF08000 Bacterial PH domain VSVS12_03665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_03665 PF00672 HAMP domain VSVS12_03666 PF01773 Na+ dependent nucleoside transporter N-terminus VSVS12_03666 PF07662 Na+ dependent nucleoside transporter C-terminus VSVS12_03666 PF07670 Nucleoside recognition VSVS12_03667 PF01609 Transposase DDE domain VSVS12_03668 PF01546 Peptidase family M20/M25/M40 VSVS12_03668 PF07687 Peptidase dimerisation domain VSVS12_03669 PF10517 VSVS12_03669 VSVS12_03670 PF00924 Mechanosensitive ion channel VSVS12_03671 PF00563 EAL domain VSVS12_03671 PF02378 Phosphotransferase system, EIIC VSVS12_03672 PF01758 Sodium Bile acid symporter family VSVS12_03673 PF01022 Bacterial regulatory protein, arsR family VSVS12_03674 PF07819 PGAP1-like protein VSVS12_03675 PF00353 Hemolysin-type calcium-binding repeat (2 copies) VSVS12_03678 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain VSVS12_03678 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VSVS12_03679 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VSVS12_03680 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain VSVS12_03680 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain VSVS12_03681 PF07361 Cytochrome b562 VSVS12_03682 PF00805 Pentapeptide repeats (8 copies) VSVS12_03682 PF13599 Pentapeptide repeats (9 copies) VSVS12_03683 PF01625 Peptide methionine sulfoxide reductase VSVS12_03683 PF01641 SelR domain VSVS12_03684 PF01268 Formate--tetrahydrofolate ligase VSVS12_03685 PF00224 Pyruvate kinase, barrel domain VSVS12_03685 PF02887 Pyruvate kinase, alpha/beta domain VSVS12_03686 PF07690 Major Facilitator Superfamily VSVS12_03687 PF13343 Bacterial extracellular solute-binding protein VSVS12_03688 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_03689 PF00072 Response regulator receiver domain VSVS12_03689 PF02954 Bacterial regulatory protein, Fis family VSVS12_03689 PF14532 Sigma-54 interaction domain VSVS12_03691 PF06934 VSVS12_03691 VSVS12_03692 PF07690 Major Facilitator Superfamily VSVS12_03694 PF01497 Periplasmic binding protein VSVS12_03695 PF00593 TonB dependent receptor VSVS12_03695 PF07715 TonB-dependent Receptor Plug Domain VSVS12_03696 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_03696 PF00672 HAMP domain VSVS12_03696 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_03696 PF16750 VSVS12_03696 VSVS12_03697 PF00072 Response regulator receiver domain VSVS12_03697 PF00486 Transcriptional regulatory protein, C terminal VSVS12_03698 PF04076 Bacterial OB fold (BOF) protein VSVS12_03699 PF13505 Outer membrane protein beta-barrel domain VSVS12_03700 PF07690 Major Facilitator Superfamily VSVS12_03701 PF11810 VSVS12_03701 VSVS12_03702 PF00497 Bacterial extracellular solute-binding proteins, family 3 VSVS12_03702 PF00990 GGDEF domain VSVS12_03704 PF13443 Cro/C1-type HTH DNA-binding domain VSVS12_03706 PF00589 Phage integrase family VSVS12_03706 PF12167 VSVS12_03706 VSVS12_03706 PF14659 Phage integrase, N-terminal SAM-like domain VSVS12_03708 PF03235 VSVS12_03708 VSVS12_03708 PF07510 VSVS12_03708 VSVS12_03710 PF01554 MatE VSVS12_03711 PF00005 ABC transporter VSVS12_03712 PF00005 ABC transporter VSVS12_03713 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VSVS12_03714 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_03716 PF11140 VSVS12_03716 VSVS12_03718 PF07148 VSVS12_03718 VSVS12_03719 PF02264 LamB porin VSVS12_03720 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_03721 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_03721 PF14785 Maltose transport system permease protein MalF P2 domain VSVS12_03722 PF13416 Bacterial extracellular solute-binding protein VSVS12_03723 PF00005 ABC transporter VSVS12_03723 PF08402 TOBE domain VSVS12_03724 PF00563 EAL domain VSVS12_03724 PF00990 GGDEF domain VSVS12_03724 PF08447 PAS fold VSVS12_03724 PF13377 Periplasmic binding protein-like domain VSVS12_03725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_03726 PF00128 Alpha amylase, catalytic domain VSVS12_03727 PF02446 4-alpha-glucanotransferase VSVS12_03728 PF00343 Carbohydrate phosphorylase VSVS12_03729 PF00196 Bacterial regulatory proteins, luxR family VSVS12_03730 PF00589 Phage integrase family VSVS12_03734 PF01609 Transposase DDE domain VSVS12_03734 PF13808 VSVS12_03734 VSVS12_03737 PF14072 VSVS12_03737 VSVS12_03741 PF01609 Transposase DDE domain VSVS12_03743 PF01609 Transposase DDE domain VSVS12_03744 PF12167 VSVS12_03744 VSVS12_03744 PF14659 Phage integrase, N-terminal SAM-like domain VSVS12_03745 PF12844 Helix-turn-helix domain VSVS12_03746 PF00665 Integrase core domain VSVS12_03748 PF03109 VSVS12_03748 VSVS12_03749 PF13358 DDE superfamily endonuclease VSVS12_03750 PF13551 Winged helix-turn helix VSVS12_03750 PF13592 VSVS12_03750 VSVS12_03751 PF00893 Small Multidrug Resistance protein VSVS12_03752 PF11658 VSVS12_03752 VSVS12_03754 PF10995 VSVS12_03754 VSVS12_03755 PF06564 YhjQ protein VSVS12_03756 PF00535 Glycosyl transferase family 2 VSVS12_03756 PF07238 PilZ domain VSVS12_03757 PF03170 Bacterial cellulose synthase subunit VSVS12_03758 PF01270 Glycosyl hydrolases family 8 VSVS12_03759 PF01270 Glycosyl hydrolases family 8 VSVS12_03760 PF05420 VSVS12_03760 VSVS12_03760 PF13414 TPR repeat VSVS12_03760 PF14559 Tetratricopeptide repeat VSVS12_03762 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_03763 PF13419 Haloacid dehalogenase-like hydrolase VSVS12_03764 PF00294 pfkB family carbohydrate kinase VSVS12_03765 PF05981 VSVS12_03765 VSVS12_03767 PF01966 HD domain VSVS12_03768 PF13419 Haloacid dehalogenase-like hydrolase VSVS12_03770 PF03091 CutA1 divalent ion tolerance protein VSVS12_03771 PF09997 VSVS12_03771 VSVS12_03772 PF00226 DnaJ domain VSVS12_03772 PF12339 VSVS12_03772 VSVS12_03773 PF09818 Predicted ATPase of the ABC class VSVS12_03774 PF00563 EAL domain VSVS12_03774 PF00990 GGDEF domain VSVS12_03775 PF07055 Enoyl reductase FAD binding domain VSVS12_03775 PF12241 Trans-2-enoyl-CoA reductase catalytic region VSVS12_03775 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VSVS12_03776 PF13472 GDSL-like Lipase/Acylhydrolase family VSVS12_03777 PF00005 ABC transporter VSVS12_03778 PF02687 VSVS12_03778 VSVS12_03779 PF01266 FAD dependent oxidoreductase VSVS12_03780 PF02626 Allophanate hydrolase subunit 2 VSVS12_03781 PF02682 Allophanate hydrolase subunit 1 VSVS12_03782 PF03746 LamB/YcsF family VSVS12_03783 PF01370 NAD dependent epimerase/dehydratase family VSVS12_03784 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system VSVS12_03785 PF05016 Plasmid stabilisation system protein VSVS12_03786 PF00665 Integrase core domain VSVS12_03786 PF13936 Helix-turn-helix domain VSVS12_03787 PF16363 VSVS12_03787 VSVS12_03788 PF00456 Transketolase, thiamine diphosphate binding domain VSVS12_03788 PF02779 Transketolase, pyrimidine binding domain VSVS12_03788 PF02780 Transketolase, C-terminal domain VSVS12_03789 PF00923 Transaldolase VSVS12_03790 PF04198 Putative sugar-binding domain VSVS12_03791 PF00704 Glycosyl hydrolases family 18 VSVS12_03792 PF00581 Rhodanese-like domain VSVS12_03794 PF00899 ThiF family VSVS12_03795 PF00994 Probable molybdopterin binding domain VSVS12_03795 PF03453 MoeA N-terminal region (domain I and II) VSVS12_03795 PF03454 MoeA C-terminal region (domain IV) VSVS12_03796 PF01227 GTP cyclohydrolase I VSVS12_03797 PF00270 DEAD/DEAH box helicase VSVS12_03797 PF00271 Helicase conserved C-terminal domain VSVS12_03797 PF03880 DbpA RNA binding domain VSVS12_03798 PF01565 FAD binding domain VSVS12_03798 PF09330 D-lactate dehydrogenase, membrane binding VSVS12_03799 PF00487 VSVS12_03799 VSVS12_03800 PF00583 Acetyltransferase (GNAT) family VSVS12_03802 PF16576 VSVS12_03802 VSVS12_03803 PF00873 AcrB/AcrD/AcrF family VSVS12_03804 PF01554 MatE VSVS12_03805 PF02311 AraC-like ligand binding domain VSVS12_03805 PF12833 Helix-turn-helix domain VSVS12_03806 PF08888 HopJ type III effector protein VSVS12_03807 PF07690 Major Facilitator Superfamily VSVS12_03808 PF01047 MarR family VSVS12_03809 PF02028 BCCT family transporter VSVS12_03810 PF00929 Exonuclease VSVS12_03811 PF00027 Cyclic nucleotide-binding domain VSVS12_03811 PF00571 CBS domain VSVS12_03811 PF03445 VSVS12_03811 VSVS12_03811 PF10335 VSVS12_03811 VSVS12_03812 PF03222 Tryptophan/tyrosine permease family VSVS12_03814 PF04336 VSVS12_03814 VSVS12_03815 PF00270 DEAD/DEAH box helicase VSVS12_03815 PF00271 Helicase conserved C-terminal domain VSVS12_03817 PF01609 Transposase DDE domain VSVS12_03818 PF00440 Bacterial regulatory proteins, tetR family VSVS12_03819 PF13561 Enoyl-(Acyl carrier protein) reductase VSVS12_03820 PF00108 Thiolase, N-terminal domain VSVS12_03820 PF02803 Thiolase, C-terminal domain VSVS12_03821 PF09361 VSVS12_03821 VSVS12_03822 PF07167 VSVS12_03822 VSVS12_03823 PF08212 Lipocalin-like domain VSVS12_03824 PF03572 Peptidase family S41 VSVS12_03825 PF04143 VSVS12_03825 VSVS12_03827 PF01609 Transposase DDE domain VSVS12_03829 PF03477 ATP cone domain VSVS12_03829 PF13597 Anaerobic ribonucleoside-triphosphate reductase VSVS12_03830 PF13353 4Fe-4S single cluster domain VSVS12_03832 PF00155 Aminotransferase class I and II VSVS12_03833 PF05618 Putative ATP-dependant zinc protease VSVS12_03834 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VSVS12_03834 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VSVS12_03835 PF13462 Thioredoxin VSVS12_03836 PF00691 OmpA family VSVS12_03837 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VSVS12_03837 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VSVS12_03838 PF10688 VSVS12_03838 VSVS12_03839 PF04363 VSVS12_03839 VSVS12_03841 PF04337 Protein of unknown function, DUF480 VSVS12_03842 PF01541 GIY-YIG catalytic domain VSVS12_03843 PF13407 Periplasmic binding protein domain VSVS12_03844 PF00072 Response regulator receiver domain VSVS12_03844 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_03844 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_03844 PF09308 LuxQ, periplasmic VSVS12_03845 PF07238 PilZ domain VSVS12_03845 PF12945 Flagellar protein YcgR VSVS12_03846 PF01266 FAD dependent oxidoreductase VSVS12_03846 PF16901 VSVS12_03846 VSVS12_03848 PF12805 VSVS12_03848 VSVS12_03848 PF13515 VSVS12_03848 VSVS12_03849 PF00580 UvrD/REP helicase N-terminal domain VSVS12_03849 PF12462 VSVS12_03849 VSVS12_03849 PF13361 UvrD-like helicase C-terminal domain VSVS12_03850 PF02142 MGS-like domain VSVS12_03851 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VSVS12_03852 PF00072 Response regulator receiver domain VSVS12_03852 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_03852 PF01627 Hpt domain VSVS12_03852 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_03852 PF12729 VSVS12_03852 VSVS12_03853 PF07947 VSVS12_03853 VSVS12_03855 PF00465 Iron-containing alcohol dehydrogenase VSVS12_03856 PF00483 Nucleotidyl transferase VSVS12_03857 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VSVS12_03857 PF02378 Phosphotransferase system, EIIC VSVS12_03858 PF00294 pfkB family carbohydrate kinase VSVS12_03859 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VSVS12_03859 PF00381 PTS HPr component phosphorylation site VSVS12_03860 PF00356 Bacterial regulatory proteins, lacI family VSVS12_03860 PF13407 Periplasmic binding protein domain VSVS12_03861 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_03861 PF00672 HAMP domain VSVS12_03861 PF02743 Cache domain VSVS12_03863 PF04076 Bacterial OB fold (BOF) protein VSVS12_03864 PF07685 CobB/CobQ-like glutamine amidotransferase domain VSVS12_03864 PF13500 AAA domain VSVS12_03865 PF13531 Bacterial extracellular solute-binding protein VSVS12_03866 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_03867 PF00005 ABC transporter VSVS12_03867 PF03459 TOBE domain VSVS12_03868 PF11269 Protein of unknown function (DUF3069) VSVS12_03869 PF00072 Response regulator receiver domain VSVS12_03869 PF00990 GGDEF domain VSVS12_03870 PF11557 VSVS12_03870 VSVS12_03871 PF00990 GGDEF domain VSVS12_03872 PF10719 VSVS12_03872 VSVS12_03873 PF10115 VSVS12_03873 VSVS12_03874 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VSVS12_03874 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VSVS12_03874 PF12769 Domain of unknown function (DUF3814) VSVS12_03875 PF02233 NAD(P) transhydrogenase beta subunit VSVS12_03876 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_03876 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_03876 PF11884 Domain of unknown function (DUF3404) VSVS12_03877 PF00072 Response regulator receiver domain VSVS12_03877 PF00486 Transcriptional regulatory protein, C terminal VSVS12_03878 PF11060 VSVS12_03878 VSVS12_03879 PF13729 VSVS12_03879 VSVS12_03880 PF03701 VSVS12_03880 VSVS12_03882 PF10881 VSVS12_03882 VSVS12_03885 PF01381 Helix-turn-helix VSVS12_03886 PF05144 VSVS12_03886 VSVS12_03886 PF05155 VSVS12_03886 VSVS12_03887 PF02303 Helix-destabilising protein VSVS12_03893 PF01381 Helix-turn-helix VSVS12_03894 PF05144 VSVS12_03894 VSVS12_03894 PF05155 VSVS12_03894 VSVS12_03895 PF02303 Helix-destabilising protein VSVS12_03899 PF01381 Helix-turn-helix VSVS12_03902 PF01253 Translation initiation factor SUI1 VSVS12_03903 PF11782 VSVS12_03903 VSVS12_03904 PF00589 Phage integrase family VSVS12_03905 PF01820 D-ala D-ala ligase N-terminus VSVS12_03905 PF07478 D-ala D-ala ligase C-terminus VSVS12_03906 PF05036 Sporulation related domain VSVS12_03907 PF13302 Acetyltransferase (GNAT) domain VSVS12_03907 PF13380 CoA binding domain VSVS12_03907 PF13549 ATP-grasp domain VSVS12_03907 PF13607 Succinyl-CoA ligase like flavodoxin domain VSVS12_03908 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_03908 PF03466 LysR substrate binding domain VSVS12_03910 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VSVS12_03910 PF12793 VSVS12_03910 VSVS12_03911 PF11869 VSVS12_03911 VSVS12_03912 PF03061 Thioesterase superfamily VSVS12_03913 PF01435 Peptidase family M48 VSVS12_03914 PF11667 VSVS12_03914 VSVS12_03915 PF03831 PhnA protein VSVS12_03915 PF08274 PhnA Zinc-Ribbon VSVS12_03916 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_03916 PF08447 PAS fold VSVS12_03918 PF03741 VSVS12_03918 VSVS12_03920 PF00149 Calcineurin-like phosphoesterase VSVS12_03920 PF02872 5'-nucleotidase, C-terminal domain VSVS12_03921 PF11398 Protein of unknown function (DUF2813) VSVS12_03922 PF06496 VSVS12_03922 VSVS12_03923 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_03923 PF03466 LysR substrate binding domain VSVS12_03924 PF00571 CBS domain VSVS12_03924 PF01226 Formate/nitrite transporter VSVS12_03925 PF04264 YceI-like domain VSVS12_03926 PF01292 Prokaryotic cytochrome b561 VSVS12_03927 PF01609 Transposase DDE domain VSVS12_03928 PF09932 VSVS12_03928 VSVS12_03930 PF00563 EAL domain VSVS12_03931 PF03606 VSVS12_03931 VSVS12_03932 PF00072 Response regulator receiver domain VSVS12_03932 PF00196 Bacterial regulatory proteins, luxR family VSVS12_03933 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_03933 PF07730 Histidine kinase VSVS12_03933 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term VSVS12_03934 PF12838 4Fe-4S dicluster domain VSVS12_03935 PF03927 NapD protein VSVS12_03936 PF00384 Molybdopterin oxidoreductase VSVS12_03936 PF01568 Molydopterin dinucleotide binding domain VSVS12_03936 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VSVS12_03937 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) VSVS12_03938 PF03264 NapC/NirT cytochrome c family, N-terminal region VSVS12_03939 PF09574 VSVS12_03939 VSVS12_03940 PF04325 Protein of unknown function (DUF465) VSVS12_03941 PF00512 His Kinase A (phospho-acceptor) domain VSVS12_03941 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VSVS12_03942 PF00072 Response regulator receiver domain VSVS12_03944 PF13609 Gram-negative porin VSVS12_03945 PF01609 Transposase DDE domain VSVS12_03946 PF14352 VSVS12_03946 VSVS12_03947 PF14352 VSVS12_03947 VSVS12_03950 PF00884 Sulfatase VSVS12_03950 PF14707 C-terminal region of aryl-sulfatase VSVS12_03951 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_03951 PF03466 LysR substrate binding domain VSVS12_03952 PF04055 Radical SAM superfamily VSVS12_03953 PF01609 Transposase DDE domain VSVS12_03954 PF08238 Sel1 repeat VSVS12_03956 PF00563 EAL domain VSVS12_03956 PF00990 GGDEF domain VSVS12_03956 PF05228 VSVS12_03956 VSVS12_03956 PF13426 PAS domain VSVS12_03957 PF01957 NfeD-like C-terminal, partner-binding VSVS12_03958 PF01145 SPFH domain / Band 7 family VSVS12_03959 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VSVS12_03960 PF03606 VSVS12_03960 VSVS12_03962 PF00270 DEAD/DEAH box helicase VSVS12_03962 PF00271 Helicase conserved C-terminal domain VSVS12_03963 PF07661 VSVS12_03963 VSVS12_03965 PF01136 VSVS12_03965 VSVS12_03966 PF05525 VSVS12_03966 VSVS12_03968 PF00271 Helicase conserved C-terminal domain VSVS12_03968 PF04851 Type III restriction enzyme, res subunit VSVS12_03968 PF12344 Ultra-violet resistance protein B VSVS12_03970 PF09346 SMI1 / KNR4 family (SUKH-1) VSVS12_03971 PF00270 DEAD/DEAH box helicase VSVS12_03971 PF00271 Helicase conserved C-terminal domain VSVS12_03971 PF16124 VSVS12_03971 VSVS12_03972 PF00141 Peroxidase VSVS12_03973 PF00871 Acetokinase family VSVS12_03974 PF00593 TonB dependent receptor VSVS12_03974 PF07715 TonB-dependent Receptor Plug Domain VSVS12_03975 PF12833 Helix-turn-helix domain VSVS12_03976 PF13411 MerR HTH family regulatory protein VSVS12_03977 PF00005 ABC transporter VSVS12_03978 PF01032 FecCD transport family VSVS12_03979 PF01032 FecCD transport family VSVS12_03980 PF01497 Periplasmic binding protein VSVS12_03981 PF13275 S4 domain VSVS12_03982 PF00563 EAL domain VSVS12_03982 PF08447 PAS fold VSVS12_03983 PF00005 ABC transporter VSVS12_03983 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VSVS12_03984 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_03984 PF12911 VSVS12_03984 VSVS12_03985 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_03986 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VSVS12_03987 PF00293 NUDIX domain VSVS12_03988 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VSVS12_03988 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VSVS12_03989 PF05362 Lon protease (S16) C-terminal proteolytic domain VSVS12_03989 PF13654 AAA domain VSVS12_03991 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_03991 PF03466 LysR substrate binding domain VSVS12_03993 PF03692 VSVS12_03993 VSVS12_03994 PF07308 VSVS12_03994 VSVS12_03995 PF02810 SEC-C motif VSVS12_03996 PF01966 HD domain VSVS12_03997 PF11730 VSVS12_03997 VSVS12_03998 PF07045 Protein of unknown function (DUF1330) VSVS12_04000 PF01925 VSVS12_04000 VSVS12_04001 PF01609 Transposase DDE domain VSVS12_04003 PF08908 VSVS12_04003 VSVS12_04004 PF01717 Cobalamin-independent synthase, Catalytic domain VSVS12_04006 PF01527 Transposase VSVS12_04007 PF00665 Integrase core domain VSVS12_04007 PF13936 Helix-turn-helix domain VSVS12_04015 PF13673 Acetyltransferase (GNAT) domain VSVS12_04017 PF11225 VSVS12_04017 VSVS12_04018 PF00583 Acetyltransferase (GNAT) family VSVS12_04021 PF00589 Phage integrase family VSVS12_04021 PF13356 Domain of unknown function (DUF4102) VSVS12_04024 PF13086 AAA domain VSVS12_04024 PF13087 AAA domain VSVS12_04024 PF13195 VSVS12_04024 VSVS12_04024 PF13604 AAA domain VSVS12_04026 PF13250 VSVS12_04026 VSVS12_04026 PF13455 VSVS12_04026 VSVS12_04027 PF01609 Transposase DDE domain VSVS12_04028 PF13304 AAA domain VSVS12_04029 PF01609 Transposase DDE domain VSVS12_04030 PF01609 Transposase DDE domain VSVS12_04032 PF01609 Transposase DDE domain VSVS12_04037 PF07383 VSVS12_04037 VSVS12_04041 PF13673 Acetyltransferase (GNAT) domain VSVS12_04043 PF08937 MTH538 TIR-like domain (DUF1863) VSVS12_04051 PF04892 VSVS12_04051 VSVS12_04052 PF00583 Acetyltransferase (GNAT) family VSVS12_04054 PF05016 Plasmid stabilisation system protein VSVS12_04055 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system VSVS12_04057 PF10711 VSVS12_04057 VSVS12_04062 PF11225 VSVS12_04062 VSVS12_04063 PF08020 Protein of unknown function (DUF1706) VSVS12_04066 PF08818 Domain of unknown function (DU1801) VSVS12_04068 PF01636 Phosphotransferase enzyme family VSVS12_04079 PF03691 VSVS12_04079 VSVS12_04083 PF01609 Transposase DDE domain VSVS12_04084 PF04828 Glutathione-dependent formaldehyde-activating enzyme VSVS12_04086 PF13420 Acetyltransferase (GNAT) domain VSVS12_04087 PF11225 VSVS12_04087 VSVS12_04088 PF00132 Bacterial transferase hexapeptide (six repeats) VSVS12_04089 PF01609 Transposase DDE domain VSVS12_04092 PF01609 Transposase DDE domain VSVS12_04094 PF11225 VSVS12_04094 VSVS12_04095 PF08681 Protein of unknown function (DUF1778) VSVS12_04096 PF13673 Acetyltransferase (GNAT) domain VSVS12_04097 PF01609 Transposase DDE domain VSVS12_04098 PF00356 Bacterial regulatory proteins, lacI family VSVS12_04098 PF13377 Periplasmic binding protein-like domain VSVS12_04099 PF00367 phosphotransferase system, EIIB VSVS12_04099 PF02378 Phosphotransferase system, EIIC VSVS12_04100 PF00294 pfkB family carbohydrate kinase VSVS12_04101 PF00251 Glycosyl hydrolases family 32 N-terminal domain VSVS12_04101 PF08244 Glycosyl hydrolases family 32 C terminal VSVS12_04103 PF16966 VSVS12_04103 VSVS12_04108 PF01609 Transposase DDE domain VSVS12_04109 PF13347 MFS/sugar transport protein VSVS12_04110 PF02056 Family 4 glycosyl hydrolase VSVS12_04110 PF11975 Family 4 glycosyl hydrolase C-terminal domain VSVS12_04111 PF12833 Helix-turn-helix domain VSVS12_04112 PF02371 VSVS12_04112 VSVS12_04113 PF13737 VSVS12_04113 VSVS12_04114 PF01526 VSVS12_04114 VSVS12_04116 PF00251 Glycosyl hydrolases family 32 N-terminal domain VSVS12_04116 PF08244 Glycosyl hydrolases family 32 C terminal VSVS12_04117 PF00005 ABC transporter VSVS12_04117 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VSVS12_04118 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_04118 PF12911 VSVS12_04118 VSVS12_04119 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_04120 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VSVS12_04124 PF16966 VSVS12_04124 VSVS12_04125 PF01609 Transposase DDE domain VSVS12_04126 PF02397 VSVS12_04126 VSVS12_04126 PF13727 CoA-binding domain VSVS12_04127 PF00005 ABC transporter VSVS12_04128 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_04129 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_04130 PF12849 PBP superfamily domain VSVS12_04131 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VSVS12_04132 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VSVS12_04132 PF02378 Phosphotransferase system, EIIC VSVS12_04133 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VSVS12_04134 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VSVS12_04135 PF12833 Helix-turn-helix domain VSVS12_04136 PF01238 Phosphomannose isomerase type I VSVS12_04137 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VSVS12_04138 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VSVS12_04139 PF12833 Helix-turn-helix domain VSVS12_04140 PF09912 VSVS12_04140 VSVS12_04140 PF10129 VSVS12_04140 VSVS12_04142 PF01925 VSVS12_04142 VSVS12_04144 PF00031 Cystatin domain VSVS12_04145 PF01266 FAD dependent oxidoreductase VSVS12_04147 PF07726 ATPase family associated with various cellular activities (AAA) VSVS12_04148 PF01882 VSVS12_04148 VSVS12_04149 PF14316 VSVS12_04149 VSVS12_04150 PF00092 von Willebrand factor type A domain VSVS12_04151 PF07719 Tetratricopeptide repeat VSVS12_04151 PF13519 von Willebrand factor type A domain VSVS12_04152 PF13584 VSVS12_04152 VSVS12_04154 PF00990 GGDEF domain VSVS12_04155 PF03734 L,D-transpeptidase catalytic domain VSVS12_04156 PF02566 OsmC-like protein VSVS12_04157 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VSVS12_04158 PF01810 VSVS12_04158 VSVS12_04159 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_04159 PF03466 LysR substrate binding domain VSVS12_04160 PF01037 AsnC family VSVS12_04160 PF13412 Winged helix-turn-helix DNA-binding VSVS12_04161 PF13520 Amino acid permease VSVS12_04162 PF12625 VSVS12_04162 VSVS12_04162 PF12833 Helix-turn-helix domain VSVS12_04164 PF13533 Biotin-lipoyl like VSVS12_04165 PF00293 NUDIX domain VSVS12_04166 PF00171 Aldehyde dehydrogenase family VSVS12_04167 PF00892 EamA-like transporter family VSVS12_04168 PF00069 Protein kinase domain VSVS12_04168 PF00990 GGDEF domain VSVS12_04168 PF01590 GAF domain VSVS12_04168 PF13191 AAA ATPase domain VSVS12_04169 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VSVS12_04169 PF01156 Inosine-uridine preferring nucleoside hydrolase VSVS12_04169 PF01965 DJ-1/PfpI family VSVS12_04170 PF12098 VSVS12_04170 VSVS12_04171 PF00593 TonB dependent receptor VSVS12_04171 PF07715 TonB-dependent Receptor Plug Domain VSVS12_04172 PF00392 Bacterial regulatory proteins, gntR family VSVS12_04172 PF07729 FCD domain VSVS12_04173 PF01032 FecCD transport family VSVS12_04174 PF01497 Periplasmic binding protein VSVS12_04175 PF00005 ABC transporter VSVS12_04176 PF07690 Major Facilitator Superfamily VSVS12_04178 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_04178 PF03466 LysR substrate binding domain VSVS12_04179 PF13437 HlyD family secretion protein VSVS12_04179 PF13533 Biotin-lipoyl like VSVS12_04180 PF11168 VSVS12_04180 VSVS12_04180 PF13515 VSVS12_04180 VSVS12_04182 PF00356 Bacterial regulatory proteins, lacI family VSVS12_04182 PF13377 Periplasmic binding protein-like domain VSVS12_04183 PF00251 Glycosyl hydrolases family 32 N-terminal domain VSVS12_04184 PF01609 Transposase DDE domain VSVS12_04185 PF00589 Phage integrase family VSVS12_04185 PF13102 Phage integrase SAM-like domain VSVS12_04186 PF13671 AAA domain VSVS12_04189 PF01609 Transposase DDE domain VSVS12_04192 PF01609 Transposase DDE domain VSVS12_04197 PF01609 Transposase DDE domain VSVS12_04199 PF00589 Phage integrase family VSVS12_04199 PF13356 Domain of unknown function (DUF4102) VSVS12_04202 PF05930 Prophage CP4-57 regulatory protein (AlpA) VSVS12_04207 PF12833 Helix-turn-helix domain VSVS12_04208 PF00563 EAL domain VSVS12_04210 PF00589 Phage integrase family VSVS12_04212 PF01575 MaoC like domain VSVS12_04213 PF12727 PBP superfamily domain VSVS12_04214 PF11225 VSVS12_04214 VSVS12_04215 PF00440 Bacterial regulatory proteins, tetR family VSVS12_04217 PF00563 EAL domain VSVS12_04217 PF12792 VSVS12_04217 VSVS12_04218 PF00248 Aldo/keto reductase family VSVS12_04219 PF00793 DAHP synthetase I family VSVS12_04220 PF04892 VSVS12_04220 VSVS12_04221 PF01040 UbiA prenyltransferase family VSVS12_04222 PF02628 VSVS12_04222 VSVS12_04224 PF02104 VSVS12_04224 VSVS12_04225 PF11137 VSVS12_04225 VSVS12_04226 PF00510 Cytochrome c oxidase subunit III VSVS12_04227 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 VSVS12_04228 PF00115 Cytochrome C and Quinol oxidase polypeptide I VSVS12_04229 PF00116 Cytochrome C oxidase subunit II, periplasmic domain VSVS12_04229 PF02790 Cytochrome C oxidase subunit II, transmembrane domain VSVS12_04229 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VSVS12_04231 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VSVS12_04231 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VSVS12_04231 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VSVS12_04231 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VSVS12_04232 PF00583 Acetyltransferase (GNAT) family VSVS12_04233 PF01810 VSVS12_04233 VSVS12_04234 PF02311 AraC-like ligand binding domain VSVS12_04234 PF12833 Helix-turn-helix domain VSVS12_04235 PF03591 VSVS12_04235 VSVS12_04236 PF05437 VSVS12_04236 VSVS12_04237 PF01557 Fumarylacetoacetate (FAA) hydrolase family VSVS12_04238 PF00267 Gram-negative porin VSVS12_04239 PF12900 Pyridoxamine 5'-phosphate oxidase VSVS12_04240 PF00155 Aminotransferase class I and II VSVS12_04240 PF00392 Bacterial regulatory proteins, gntR family VSVS12_04241 PF00313 'Cold-shock' DNA-binding domain VSVS12_04242 PF13743 Thioredoxin VSVS12_04243 PF01734 Patatin-like phospholipase VSVS12_04244 PF01470 Pyroglutamyl peptidase VSVS12_04245 PF06166 VSVS12_04245 VSVS12_04246 PF06149 VSVS12_04246 VSVS12_04247 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_04247 PF13682 Chemoreceptor zinc-binding domain VSVS12_04248 PF01609 Transposase DDE domain VSVS12_04252 PF12843 VSVS12_04252 VSVS12_04253 PF11769 VSVS12_04253 VSVS12_04255 PF00768 D-alanyl-D-alanine carboxypeptidase VSVS12_04255 PF07943 Penicillin-binding protein 5, C-terminal domain VSVS12_04257 PF00313 'Cold-shock' DNA-binding domain VSVS12_04258 PF07152 YaeQ protein VSVS12_04260 PF00042 Globin VSVS12_04260 PF00175 Oxidoreductase NAD-binding domain VSVS12_04260 PF00970 Oxidoreductase FAD-binding domain VSVS12_04261 PF00158 Sigma-54 interaction domain VSVS12_04261 PF01590 GAF domain VSVS12_04262 PF13417 Glutathione S-transferase, N-terminal domain VSVS12_04263 PF13419 Haloacid dehalogenase-like hydrolase VSVS12_04264 PF02525 Flavodoxin-like fold VSVS12_04265 PF00999 Sodium/hydrogen exchanger family VSVS12_04265 PF02254 TrkA-N domain VSVS12_04266 PF01554 MatE VSVS12_04267 PF00892 EamA-like transporter family VSVS12_04268 PF00892 EamA-like transporter family VSVS12_04269 PF00462 Glutaredoxin VSVS12_04270 PF01610 VSVS12_04270 VSVS12_04270 PF13542 VSVS12_04270 VSVS12_04272 PF07690 Major Facilitator Superfamily VSVS12_04273 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_04273 PF03466 LysR substrate binding domain VSVS12_04274 PF00990 GGDEF domain VSVS12_04275 PF00563 EAL domain VSVS12_04277 PF01467 Cytidylyltransferase VSVS12_04278 PF02540 NAD synthase VSVS12_04279 PF00196 Bacterial regulatory proteins, luxR family VSVS12_04280 PF00089 Trypsin VSVS12_04281 PF01571 Aminomethyltransferase folate-binding domain VSVS12_04281 PF08669 Glycine cleavage T-protein C-terminal barrel domain VSVS12_04282 PF01381 Helix-turn-helix VSVS12_04282 PF07883 Cupin domain VSVS12_04283 PF01597 Glycine cleavage H-protein VSVS12_04284 PF02347 Glycine cleavage system P-protein VSVS12_04285 PF00440 Bacterial regulatory proteins, tetR family VSVS12_04285 PF14246 AefR-like transcriptional repressor, C-terminal region VSVS12_04286 PF09831 VSVS12_04286 VSVS12_04288 PF00990 GGDEF domain VSVS12_04289 PF01810 VSVS12_04289 VSVS12_04290 PF00589 Phage integrase family VSVS12_04290 PF13495 Phage integrase, N-terminal SAM-like domain VSVS12_04291 PF00453 Ribosomal protein L20 VSVS12_04292 PF01632 Ribosomal protein L35 VSVS12_04293 PF00707 Translation initiation factor IF-3, C-terminal domain VSVS12_04293 PF05198 Translation initiation factor IF-3, N-terminal domain VSVS12_04294 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VSVS12_04294 PF02824 TGS domain VSVS12_04294 PF03129 Anticodon binding domain VSVS12_04294 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VSVS12_04295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VSVS12_04295 PF00672 HAMP domain VSVS12_04296 PF13609 Gram-negative porin VSVS12_04297 PF01037 AsnC family VSVS12_04297 PF13412 Winged helix-turn-helix DNA-binding VSVS12_04298 PF01810 VSVS12_04298 VSVS12_04299 PF04954 Siderophore-interacting protein VSVS12_04299 PF08021 Siderophore-interacting FAD-binding domain VSVS12_04300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_04300 PF03466 LysR substrate binding domain VSVS12_04301 PF00107 Zinc-binding dehydrogenase VSVS12_04301 PF08240 Alcohol dehydrogenase GroES-like domain VSVS12_04302 PF00756 Putative esterase VSVS12_04304 PF00849 RNA pseudouridylate synthase VSVS12_04305 PF12464 Maltose acetyltransferase VSVS12_04305 PF14602 Hexapeptide repeat of succinyl-transferase VSVS12_04306 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VSVS12_04308 PF04266 ASCH domain VSVS12_04309 PF01609 Transposase DDE domain VSVS12_04310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_04310 PF03466 LysR substrate binding domain VSVS12_04311 PF07969 Amidohydrolase family VSVS12_04312 PF01609 Transposase DDE domain VSVS12_04315 PF12158 VSVS12_04315 VSVS12_04317 PF01544 CorA-like Mg2+ transporter protein VSVS12_04318 PF02254 TrkA-N domain VSVS12_04318 PF07885 Ion channel VSVS12_04319 PF01048 Phosphorylase superfamily VSVS12_04320 PF00027 Cyclic nucleotide-binding domain VSVS12_04321 PF01773 Na+ dependent nucleoside transporter N-terminus VSVS12_04321 PF07662 Na+ dependent nucleoside transporter C-terminus VSVS12_04321 PF07670 Nucleoside recognition VSVS12_04322 PF02525 Flavodoxin-like fold VSVS12_04323 PF13577 SnoaL-like domain VSVS12_04324 PF13577 SnoaL-like domain VSVS12_04325 PF08534 Redoxin VSVS12_04326 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_04326 PF03466 LysR substrate binding domain VSVS12_04327 PF00313 'Cold-shock' DNA-binding domain VSVS12_04328 PF01098 VSVS12_04328 VSVS12_04329 PF01161 Phosphatidylethanolamine-binding protein VSVS12_04330 PF12833 Helix-turn-helix domain VSVS12_04331 PF01551 Peptidase family M23 VSVS12_04331 PF04225 Opacity-associated protein A LysM-like domain VSVS12_04334 PF04828 Glutathione-dependent formaldehyde-activating enzyme VSVS12_04335 PF06912 VSVS12_04335 VSVS12_04336 PF07670 Nucleoside recognition VSVS12_04337 PF00270 DEAD/DEAH box helicase VSVS12_04337 PF00271 Helicase conserved C-terminal domain VSVS12_04338 PF04728 Lipoprotein leucine-zipper VSVS12_04339 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VSVS12_04339 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VSVS12_04340 PF13419 Haloacid dehalogenase-like hydrolase VSVS12_04341 PF13437 HlyD family secretion protein VSVS12_04342 PF00005 ABC transporter VSVS12_04343 PF12698 ABC-2 family transporter protein VSVS12_04344 PF03372 Endonuclease/Exonuclease/phosphatase family VSVS12_04345 PF00132 Bacterial transferase hexapeptide (six repeats) VSVS12_04346 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_04358 PF02028 BCCT family transporter VSVS12_04359 PF02588 VSVS12_04359 VSVS12_04360 PF01476 LysM domain VSVS12_04360 PF03734 L,D-transpeptidase catalytic domain VSVS12_04361 PF00875 DNA photolyase VSVS12_04361 PF03441 FAD binding domain of DNA photolyase VSVS12_04362 PF13411 MerR HTH family regulatory protein VSVS12_04363 PF04463 VSVS12_04363 VSVS12_04363 PF08349 VSVS12_04363 VSVS12_04364 PF01048 Phosphorylase superfamily VSVS12_04367 PF00990 GGDEF domain VSVS12_04368 PF11742 VSVS12_04368 VSVS12_04369 PF13533 Biotin-lipoyl like VSVS12_04370 PF07155 ECF-type riboflavin transporter, S component VSVS12_04371 PF00005 ABC transporter VSVS12_04371 PF12558 VSVS12_04371 VSVS12_04372 PF02361 Cobalt transport protein VSVS12_04376 PF01609 Transposase DDE domain VSVS12_04377 PF01609 Transposase DDE domain VSVS12_04377 PF13808 VSVS12_04377 VSVS12_04381 PF01131 DNA topoisomerase VSVS12_04381 PF01751 Toprim domain VSVS12_04383 PF00583 Acetyltransferase (GNAT) family VSVS12_04386 PF14284 VSVS12_04386 VSVS12_04387 PF13384 Homeodomain-like domain VSVS12_04388 PF13358 DDE superfamily endonuclease VSVS12_04389 PF13416 Bacterial extracellular solute-binding protein VSVS12_04390 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_04391 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_04392 PF00005 ABC transporter VSVS12_04393 PF03009 Glycerophosphoryl diester phosphodiesterase family VSVS12_04394 PF00480 ROK family VSVS12_04395 PF16363 VSVS12_04395 VSVS12_04396 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VSVS12_04396 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VSVS12_04397 PF03372 Endonuclease/Exonuclease/phosphatase family VSVS12_04399 PF03009 Glycerophosphoryl diester phosphodiesterase family VSVS12_04401 PF10881 VSVS12_04401 VSVS12_04403 PF12101 VSVS12_04403 VSVS12_04407 PF07798 VSVS12_04407 VSVS12_04409 PF06924 Protein of unknown function (DUF1281) VSVS12_04415 PF00437 Type II/IV secretion system protein VSVS12_04416 PF00482 Type II secretion system (T2SS), protein F VSVS12_04421 PF00089 Trypsin VSVS12_04422 PF00216 Bacterial DNA-binding protein VSVS12_04426 PF11072 VSVS12_04426 VSVS12_04429 PF01935 Domain of unknown function DUF87 VSVS12_04429 PF12696 TraM recognition site of TraD and TraG VSVS12_04430 PF14348 VSVS12_04430 VSVS12_04433 PF09686 VSVS12_04433 VSVS12_04434 PF11660 VSVS12_04434 VSVS12_04435 PF11190 VSVS12_04435 VSVS12_04436 PF11990 VSVS12_04436 VSVS12_04439 PF11444 VSVS12_04439 VSVS12_04440 PF11920 VSVS12_04440 VSVS12_04443 PF11130 VSVS12_04443 VSVS12_04444 PF06834 VSVS12_04444 VSVS12_04447 PF07916 VSVS12_04447 VSVS12_04449 PF08378 VSVS12_04449 VSVS12_04451 PF02954 Bacterial regulatory protein, Fis family VSVS12_04455 PF14213 VSVS12_04455 VSVS12_04457 PF04013 Putative SAM-dependent RNA methyltransferase VSVS12_04458 PF02631 RecX family VSVS12_04461 PF04002 RadC-like JAB domain VSVS12_04462 PF11679 VSVS12_04462 VSVS12_04465 PF00271 Helicase conserved C-terminal domain VSVS12_04465 PF04851 Type III restriction enzyme, res subunit VSVS12_04471 PF13614 AAA domain VSVS12_04474 PF07514 Putative helicase VSVS12_04475 PF01609 Transposase DDE domain VSVS12_04476 PF07514 Putative helicase VSVS12_04476 PF07515 Protein of unknown function (DUF1528) VSVS12_04478 PF08900 VSVS12_04478 VSVS12_04485 PF04245 VSVS12_04485 VSVS12_04487 PF11140 VSVS12_04487 VSVS12_04488 PF06183 DinI-like family VSVS12_04490 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system VSVS12_04491 PF06769 Plasmid encoded toxin Txe VSVS12_04492 PF00239 Resolvase, N terminal domain VSVS12_04494 PF00872 VSVS12_04494 VSVS12_04495 PF13175 AAA ATPase domain VSVS12_04496 PF01695 IstB-like ATP binding protein VSVS12_04497 PF00665 Integrase core domain VSVS12_04497 PF13384 Homeodomain-like domain VSVS12_04498 PF16549 VSVS12_04498 VSVS12_04499 PF01848 VSVS12_04499 VSVS12_04500 PF00589 Phage integrase family VSVS12_04503 PF01609 Transposase DDE domain VSVS12_04503 PF13808 VSVS12_04503 VSVS12_04507 PF01131 DNA topoisomerase VSVS12_04507 PF01751 Toprim domain VSVS12_04509 PF00583 Acetyltransferase (GNAT) family VSVS12_04512 PF14284 VSVS12_04512 VSVS12_04513 PF13384 Homeodomain-like domain VSVS12_04514 PF13358 DDE superfamily endonuclease VSVS12_04515 PF13416 Bacterial extracellular solute-binding protein VSVS12_04516 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_04517 PF00528 Binding-protein-dependent transport system inner membrane component VSVS12_04518 PF00005 ABC transporter VSVS12_04519 PF03009 Glycerophosphoryl diester phosphodiesterase family VSVS12_04520 PF00480 ROK family VSVS12_04521 PF16363 VSVS12_04521 VSVS12_04522 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VSVS12_04522 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VSVS12_04523 PF03372 Endonuclease/Exonuclease/phosphatase family VSVS12_04528 PF03009 Glycerophosphoryl diester phosphodiesterase family VSVS12_04529 PF12101 VSVS12_04529 VSVS12_04530 PF03553 VSVS12_04530 VSVS12_04531 PF03553 VSVS12_04531 VSVS12_04533 PF08775 ParB family VSVS12_04533 PF13412 Winged helix-turn-helix DNA-binding VSVS12_04536 PF13614 AAA domain VSVS12_04539 PF00486 Transcriptional regulatory protein, C terminal VSVS12_04542 PF01212 Beta-eliminating lyase VSVS12_04545 PF01261 Xylose isomerase-like TIM barrel VSVS12_04546 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VSVS12_04547 PF00596 Class II Aldolase and Adducin N-terminal domain VSVS12_04548 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VSVS12_04549 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VSVS12_04550 PF03611 VSVS12_04550 VSVS12_04551 PF00455 VSVS12_04551 VSVS12_04551 PF08220 DeoR-like helix-turn-helix domain VSVS12_04552 PF13483 Beta-lactamase superfamily domain VSVS12_04553 PF07968 Leukocidin/Hemolysin toxin family VSVS12_04553 PF12563 Hemolytic toxin N terminal VSVS12_04555 PF02661 Fic/DOC family VSVS12_04555 PF13776 VSVS12_04555 VSVS12_04556 PF00239 Resolvase, N terminal domain VSVS12_04556 PF02796 Helix-turn-helix domain of resolvase VSVS12_04557 PF00239 Resolvase, N terminal domain VSVS12_04558 PF01051 Initiator Replication protein VSVS12_04560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VSVS12_04560 PF03466 LysR substrate binding domain VSVS12_04561 PF03553 VSVS12_04561 VSVS12_04564 PF08775 ParB family VSVS12_04564 PF13412 Winged helix-turn-helix DNA-binding VSVS12_04565 PF13614 AAA domain VSVS12_04566 PF02517 CAAX protease self-immunity VSVS12_04568 PF00486 Transcriptional regulatory protein, C terminal VSVS12_04570 PF01212 Beta-eliminating lyase VSVS12_04572 PF01261 Xylose isomerase-like TIM barrel VSVS12_04573 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VSVS12_04574 PF00596 Class II Aldolase and Adducin N-terminal domain VSVS12_04575 PF00596 Class II Aldolase and Adducin N-terminal domain VSVS12_04576 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VSVS12_04577 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VSVS12_04577 PF03611 VSVS12_04577 VSVS12_04578 PF00455 VSVS12_04578 VSVS12_04578 PF08220 DeoR-like helix-turn-helix domain VSVS12_04579 PF13483 Beta-lactamase superfamily domain VSVS12_04580 PF07968 Leukocidin/Hemolysin toxin family VSVS12_04581 PF12563 Hemolytic toxin N terminal VSVS12_04583 PF02661 Fic/DOC family VSVS12_04583 PF13776 VSVS12_04583 VSVS12_04584 PF00239 Resolvase, N terminal domain VSVS12_04585 PF00239 Resolvase, N terminal domain VSVS12_04588 PF01051 Initiator Replication protein VSVS12_04589 PF01051 Initiator Replication protein VSVS12_04591 PF00589 Phage integrase family VSVS12_04595 PF00239 Resolvase, N terminal domain VSVS12_04596 PF04352 ProQ/FINO family VSVS12_04597 PF06054 VSVS12_04597 VSVS12_04602 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VSVS12_04603 PF02387 VSVS12_04603 VSVS12_04605 PF10145 VSVS12_04605