VSVS12_00006 SM00563 Phosphate acyltransferases VSVS12_00011 SM00450 Rhodanese Homology Domain VSVS12_00014 SM00382 ATPases associated with a variety of cellular activities VSVS12_00015 SM00382 ATPases associated with a variety of cellular activities VSVS12_00015 SM00962 SRP54-type protein, GTPase domain VSVS12_00015 SM00963 SRP54-type protein, helical bundle domain VSVS12_00027 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VSVS12_00028 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VSVS12_00029 SM00052 Putative diguanylate phosphodiesterase VSVS12_00034 SM01144 VSVS12_00034 VSVS12_00040 SM01219 VSVS12_00040 VSVS12_00064 SM00357 Cold shock protein domain VSVS12_00064 SM00382 ATPases associated with a variety of cellular activities VSVS12_00064 SM00959 Rho termination factor, N-terminal domain VSVS12_00066 SM00487 DEAD-like helicases superfamily VSVS12_00066 SM00490 helicase superfamily c-terminal domain VSVS12_00070 SM00341 Helicase and RNase D C-terminal VSVS12_00070 SM00487 DEAD-like helicases superfamily VSVS12_00070 SM00490 helicase superfamily c-terminal domain VSVS12_00070 SM00956 VSVS12_00070 VSVS12_00072 SM00342 helix_turn_helix, arabinose operon control protein VSVS12_00087 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VSVS12_00087 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VSVS12_00088 SM00220 Serine/Threonine protein kinases, catalytic domain VSVS12_00101 SM00382 ATPases associated with a variety of cellular activities VSVS12_00115 SM00729 Elongator protein 3, MiaB family, Radical SAM VSVS12_00121 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs VSVS12_00121 SM00474 3'-5' exonuclease VSVS12_00121 SM00475 5'-3' exonuclease VSVS12_00121 SM00482 DNA polymerase A domain VSVS12_00122 SM01004 Delta-aminolevulinic acid dehydratase VSVS12_00136 SM00354 helix_turn _helix lactose operon repressor VSVS12_00152 SM00052 Putative diguanylate phosphodiesterase VSVS12_00152 SM00091 PAS domain VSVS12_00152 SM00267 diguanylate cyclase VSVS12_00153 SM00344 helix_turn_helix ASNC type VSVS12_00158 SM00876 Biotin and Thiamin Synthesis associated domain VSVS12_00186 SM00382 ATPases associated with a variety of cellular activities VSVS12_00194 SM00470 ParB-like nuclease domain VSVS12_00197 SM01228 VSVS12_00197 VSVS12_00201 SM01234 VSVS12_00201 VSVS12_00204 SM00382 ATPases associated with a variety of cellular activities VSVS12_00206 SM00062 Bacterial periplasmic substrate-binding proteins VSVS12_00207 SM00382 ATPases associated with a variety of cellular activities VSVS12_00207 SM00760 Bacterial dnaA protein helix-turn-helix domain VSVS12_00208 SM00480 DNA polymerase III beta subunit VSVS12_00210 SM00387 Histidine kinase-like ATPases VSVS12_00210 SM00433 TopoisomeraseII VSVS12_00219 SM00829 Enoylreductase VSVS12_00232 SM00857 Resolvase, N terminal domain VSVS12_00260 SM01001 AIR carboxylase VSVS12_00274 SM00052 Putative diguanylate phosphodiesterase VSVS12_00274 SM00267 diguanylate cyclase VSVS12_00274 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VSVS12_00275 SM00382 ATPases associated with a variety of cellular activities VSVS12_00275 SM00448 cheY-homologous receiver domain VSVS12_00276 SM00091 PAS domain VSVS12_00276 SM00387 Histidine kinase-like ATPases VSVS12_00276 SM00388 His Kinase A (phosphoacceptor) domain VSVS12_00277 SM01230 VSVS12_00277 VSVS12_00287 SM00363 S4 RNA-binding domain VSVS12_00290 SM00382 ATPases associated with a variety of cellular activities VSVS12_00300 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VSVS12_00300 SM00387 Histidine kinase-like ATPases VSVS12_00300 SM00388 His Kinase A (phosphoacceptor) domain VSVS12_00301 SM00448 cheY-homologous receiver domain VSVS12_00301 SM00862 Transcriptional regulatory protein, C terminal VSVS12_00305 SM00316 Ribosomal protein S1-like RNA-binding domain VSVS12_00305 SM00732 Likely ribonuclease with RNase H fold. VSVS12_00312 SM01081 Putative carbohydrate binding domain VSVS12_00313 SM00487 DEAD-like helicases superfamily VSVS12_00313 SM00490 helicase superfamily c-terminal domain VSVS12_00315 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VSVS12_00315 SM00954 Region found in RelA / SpoT proteins VSVS12_00316 SM01409 VSVS12_00316 VSVS12_00317 SM00072 Guanylate kinase homologues. VSVS12_00328 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VSVS12_00328 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VSVS12_00328 SM01049 VSVS12_00328 VSVS12_00333 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain VSVS12_00333 SM01232 VSVS12_00333 VSVS12_00350 SM00858 VSVS12_00350 VSVS12_00356 SM00155 Phospholipase D. Active site motifs. VSVS12_00361 SM00883 Chaperonin 10 Kd subunit VSVS12_00363 SM00267 diguanylate cyclase VSVS12_00370 SM00919 Malic enzyme, NAD binding domain VSVS12_00370 SM01274 VSVS12_00370 VSVS12_00372 SM00487 DEAD-like helicases superfamily VSVS12_00372 SM00490 helicase superfamily c-terminal domain VSVS12_00373 SM00354 helix_turn _helix lactose operon repressor VSVS12_00375 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. VSVS12_00377 SM00984 UDP binding domain VSVS12_00378 SM00984 UDP binding domain VSVS12_00411 SM00382 ATPases associated with a variety of cellular activities VSVS12_00411 SM01086 C-terminal, D2-small domain, of ClpB protein VSVS12_00419 SM00450 Rhodanese Homology Domain VSVS12_00422 SM00971 Serine acetyltransferase, N-terminal VSVS12_00426 SM00859 Semialdehyde dehydrogenase, NAD binding domain VSVS12_00440 SM00965 Secretin and TonB N terminus short domain VSVS12_00452 SM01150 VSVS12_00452 VSVS12_00453 SM00100 Cyclic nucleotide-monophosphate binding domain VSVS12_00453 SM00419 helix_turn_helix, cAMP Regulatory protein VSVS12_00459 SM00382 ATPases associated with a variety of cellular activities VSVS12_00465 SM00788 Adenylosuccinate synthetase VSVS12_00466 SM00671 Sel1-like repeats. VSVS12_00468 SM00316 Ribosomal protein S1-like RNA-binding domain VSVS12_00468 SM00357 Cold shock protein domain VSVS12_00468 SM00955 VSVS12_00468 VSVS12_00469 SM00967 RNA 2'-O ribose methyltransferase substrate binding VSVS12_00470 SM01403 VSVS12_00470 VSVS12_00474 SM01382 VSVS12_00474 VSVS12_00474 SM01383 VSVS12_00474 VSVS12_00477 SM00322 K homology RNA-binding domain VSVS12_00481 SM01374 VSVS12_00481 VSVS12_00482 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. VSVS12_00495 SM00363 S4 RNA-binding domain VSVS12_00495 SM01390 VSVS12_00495 VSVS12_00496 SM00662 RNA polymerases D VSVS12_00533 SM01018 B12 binding domain VSVS12_00534 SM00924 MgtE intracellular N domain VSVS12_00540 SM00382 ATPases associated with a variety of cellular activities VSVS12_00544 SM00116 Domain in cystathionine beta-synthase and other proteins. VSVS12_00546 SM00382 ATPases associated with a variety of cellular activities VSVS12_00553 SM00563 Phosphate acyltransferases VSVS12_00560 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VSVS12_00560 SM01049 VSVS12_00560 VSVS12_00567 SM00478 endonuclease III VSVS12_00567 SM00525 VSVS12_00567 VSVS12_00570 SM00729 Elongator protein 3, MiaB family, Radical SAM VSVS12_00573 SM01152 VSVS12_00573 VSVS12_00577 SM00382 ATPases associated with a variety of cellular activities VSVS12_00584 SM00421 helix_turn_helix, Lux Regulon VSVS12_00586 SM00052 Putative diguanylate phosphodiesterase VSVS12_00586 SM00267 diguanylate cyclase VSVS12_00590 SM00965 Secretin and TonB N terminus short domain VSVS12_00592 SM00028 Tetratricopeptide repeats VSVS12_00595 SM00382 ATPases associated with a variety of cellular activities VSVS12_00610 SM00316 Ribosomal protein S1-like RNA-binding domain VSVS12_00641 SM00650 Ribosomal RNA adenine dimethylases VSVS12_00645 SM00271 DnaJ molecular chaperone homology domain VSVS12_00650 SM00670 Large family of predicted nucleotide-binding domains VSVS12_00651 SM00487 DEAD-like helicases superfamily VSVS12_00651 SM00490 helicase superfamily c-terminal domain VSVS12_00661 SM00644 VSVS12_00661 VSVS12_00666 SM00345 helix_turn_helix gluconate operon transcriptional repressor VSVS12_00666 SM00895 VSVS12_00666 VSVS12_00672 SM00947 Carbonic anhydrase VSVS12_00676 SM00382 ATPases associated with a variety of cellular activities VSVS12_00685 SM00487 DEAD-like helicases superfamily VSVS12_00685 SM00490 helicase superfamily c-terminal domain VSVS12_00685 SM00847 Helicase associated domain (HA2) Add an annotation VSVS12_00693 SM00938 Nitrogen regulatory protein P-II VSVS12_00697 SM00382 ATPases associated with a variety of cellular activities VSVS12_00701 SM01068 Putative carbohydrate binding domain VSVS12_00705 SM00382 ATPases associated with a variety of cellular activities VSVS12_00706 SM00382 ATPases associated with a variety of cellular activities VSVS12_00710 SM00091 PAS domain VSVS12_00710 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VSVS12_00710 SM00387 Histidine kinase-like ATPases VSVS12_00710 SM00388 His Kinase A (phosphoacceptor) domain VSVS12_00710 SM00448 cheY-homologous receiver domain VSVS12_00719 SM00363 S4 RNA-binding domain VSVS12_00724 SM01103 VSVS12_00724 VSVS12_00726 SM00382 ATPases associated with a variety of cellular activities VSVS12_00733 SM00316 Ribosomal protein S1-like RNA-binding domain VSVS12_00733 SM00322 K homology RNA-binding domain VSVS12_00741 SM00729 Elongator protein 3, MiaB family, Radical SAM VSVS12_00742 SM00091 PAS domain VSVS12_00742 SM00267 diguanylate cyclase VSVS12_00743 SM00073 Histidine Phosphotransfer domain VSVS12_00743 SM00091 PAS domain VSVS12_00743 SM00387 Histidine kinase-like ATPases VSVS12_00743 SM00388 His Kinase A (phosphoacceptor) domain VSVS12_00743 SM00448 cheY-homologous receiver domain VSVS12_00749 SM00927 DNA mismatch repair enzyme MutH VSVS12_00751 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VSVS12_00757 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VSVS12_00760 SM00904 Riboflavin kinase VSVS12_00770 SM00448 cheY-homologous receiver domain VSVS12_00770 SM00850 LytTr DNA-binding domain VSVS12_00773 SM00830 Chorismate mutase type II VSVS12_00776 SM00382 ATPases associated with a variety of cellular activities VSVS12_00780 SM00052 Putative diguanylate phosphodiesterase VSVS12_00780 SM00267 diguanylate cyclase VSVS12_00782 SM00830 Chorismate mutase type II VSVS12_00784 SM00062 Bacterial periplasmic substrate-binding proteins VSVS12_00788 SM00363 S4 RNA-binding domain VSVS12_00790 SM00382 ATPases associated with a variety of cellular activities VSVS12_00790 SM01086 C-terminal, D2-small domain, of ClpB protein VSVS12_00810 SM00271 DnaJ molecular chaperone homology domain VSVS12_00815 SM00562 VSVS12_00815 VSVS12_00820 SM00464 Found in ATP-dependent protease La (LON) VSVS12_00830 SM00900 VSVS12_00830 VSVS12_00836 SM00267 diguanylate cyclase VSVS12_00836 SM00448 cheY-homologous receiver domain VSVS12_00850 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase VSVS12_00863 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VSVS12_00872 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VSVS12_00874 SM00935 Outer membrane protein (OmpH-like) VSVS12_00880 SM00481 DNA polymerase alpha chain like domain VSVS12_00882 SM00977 TilS substrate C-terminal domain VSVS12_00883 SM00938 Nitrogen regulatory protein P-II VSVS12_00886 SM00257 Lysin motif VSVS12_00887 SM00849 Metallo-beta-lactamase superfamily VSVS12_00890 SM00479 VSVS12_00890 VSVS12_00903 SM00382 ATPases associated with a variety of cellular activities VSVS12_00903 SM00930 VSVS12_00903 VSVS12_00909 SM00729 Elongator protein 3, MiaB family, Radical SAM VSVS12_00912 SM00936 Penicillin-binding protein 5, C-terminal domain VSVS12_00923 SM00116 Domain in cystathionine beta-synthase and other proteins. VSVS12_00923 SM01091 Transporter associated domain VSVS12_00926 SM00729 Elongator protein 3, MiaB family, Radical SAM VSVS12_00934 SM00771 ZipA, C-terminal domain (FtsZ-binding) VSVS12_00935 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VSVS12_00935 SM00292 breast cancer carboxy-terminal domain VSVS12_00935 SM00532 Ligase N family VSVS12_00940 SM00244 prohibitin homologues VSVS12_00946 SM00938 Nitrogen regulatory protein P-II VSVS12_00947 SM00116 Domain in cystathionine beta-synthase and other proteins. VSVS12_00952 SM00862 Transcriptional regulatory protein, C terminal VSVS12_00953 SM00387 Histidine kinase-like ATPases VSVS12_00970 SM00858 VSVS12_00970 VSVS12_00971 SM00260 Two component signalling adaptor domain VSVS12_00971 SM00448 cheY-homologous receiver domain VSVS12_00972 SM00138 Methyltransferase, chemotaxis proteins VSVS12_00981 SM00047 Lysozyme subfamily 2 VSVS12_01004 SM01400 VSVS12_01004 VSVS12_01008 SM00937 VSVS12_01008 VSVS12_01021 SM00028 Tetratricopeptide repeats VSVS12_01024 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VSVS12_01024 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VSVS12_01028 SM00487 DEAD-like helicases superfamily VSVS12_01036 SM00857 Resolvase, N terminal domain VSVS12_01044 SM01130 VSVS12_01044 VSVS12_01047 SM00479 VSVS12_01047 VSVS12_01051 SM00478 endonuclease III VSVS12_01051 SM00525 VSVS12_01051 VSVS12_01053 SM00900 VSVS12_01053 VSVS12_01060 SM00487 DEAD-like helicases superfamily VSVS12_01060 SM00490 helicase superfamily c-terminal domain VSVS12_01061 SM00382 ATPases associated with a variety of cellular activities VSVS12_01061 SM00448 cheY-homologous receiver domain VSVS12_01064 SM00729 Elongator protein 3, MiaB family, Radical SAM VSVS12_01065 SM00852 Probable molybdopterin binding domain VSVS12_01069 SM00116 Domain in cystathionine beta-synthase and other proteins. VSVS12_01078 SM00226 Low molecular weight phosphatase family VSVS12_01083 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain VSVS12_01083 SM00437 Bacterial DNA topoisomerase I DNA-binding domain VSVS12_01083 SM00493 VSVS12_01083 VSVS12_01086 SM00267 diguanylate cyclase VSVS12_01090 SM00345 helix_turn_helix gluconate operon transcriptional repressor VSVS12_01090 SM00866 VSVS12_01090 VSVS12_01091 SM00861 Transketolase, pyrimidine binding domain VSVS12_01109 SM00073 Histidine Phosphotransfer domain VSVS12_01112 SM00859 Semialdehyde dehydrogenase, NAD binding domain VSVS12_01113 SM00345 helix_turn_helix gluconate operon transcriptional repressor VSVS12_01134 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VSVS12_01149 SM00420 helix_turn_helix, Deoxyribose operon repressor VSVS12_01149 SM01134 VSVS12_01149 VSVS12_01157 SM00346 helix_turn_helix isocitrate lyase regulation VSVS12_01174 SM00382 ATPases associated with a variety of cellular activities VSVS12_01181 SM00729 Elongator protein 3, MiaB family, Radical SAM VSVS12_01186 SM00382 ATPases associated with a variety of cellular activities VSVS12_01186 SM00448 cheY-homologous receiver domain VSVS12_01187 SM00387 Histidine kinase-like ATPases VSVS12_01187 SM00388 His Kinase A (phosphoacceptor) domain VSVS12_01190 SM00382 ATPases associated with a variety of cellular activities VSVS12_01190 SM00994 ClpX C4-type zinc finger VSVS12_01190 SM01086 C-terminal, D2-small domain, of ClpB protein VSVS12_01191 SM00382 ATPases associated with a variety of cellular activities VSVS12_01191 SM00464 Found in ATP-dependent protease La (LON) VSVS12_01192 SM00411 bacterial (prokaryotic) histone like domain VSVS12_01196 SM00316 Ribosomal protein S1-like RNA-binding domain VSVS12_01197 SM00411 bacterial (prokaryotic) histone like domain VSVS12_01199 SM00028 Tetratricopeptide repeats VSVS12_01200 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family VSVS12_01212 SM00382 ATPases associated with a variety of cellular activities VSVS12_01215 SM01266 VSVS12_01215 VSVS12_01217 SM00870 VSVS12_01217 VSVS12_01223 SM00487 DEAD-like helicases superfamily VSVS12_01223 SM00491 VSVS12_01223 VSVS12_01229 SM00474 3'-5' exonuclease VSVS12_01231 SM00155 Phospholipase D. Active site motifs. VSVS12_01233 SM00316 Ribosomal protein S1-like RNA-binding domain VSVS12_01234 SM00363 S4 RNA-binding domain VSVS12_01240 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. VSVS12_01241 SM00822 VSVS12_01241 VSVS12_01243 SM00825 Beta-ketoacyl synthase VSVS12_01260 SM00260 Two component signalling adaptor domain VSVS12_01260 SM00448 cheY-homologous receiver domain VSVS12_01261 SM00481 DNA polymerase alpha chain like domain VSVS12_01274 SM00420 helix_turn_helix, Deoxyribose operon repressor VSVS12_01274 SM01134 VSVS12_01274 VSVS12_01275 SM00357 Cold shock protein domain VSVS12_01278 SM00420 helix_turn_helix, Deoxyribose operon repressor VSVS12_01278 SM01134 VSVS12_01278 VSVS12_01280 SM01144 VSVS12_01280 VSVS12_01281 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VSVS12_01282 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VSVS12_01288 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain VSVS12_01294 SM00563 Phosphate acyltransferases VSVS12_01296 SM00978 VSVS12_01296 VSVS12_01299 SM00344 helix_turn_helix ASNC type VSVS12_01304 SM00062 Bacterial periplasmic substrate-binding proteins VSVS12_01304 SM00267 diguanylate cyclase VSVS12_01306 SM01276 VSVS12_01306 VSVS12_01307 SM00448 cheY-homologous receiver domain VSVS12_01308 SM00052 Putative diguanylate phosphodiesterase VSVS12_01308 SM00421 helix_turn_helix, Lux Regulon VSVS12_01308 SM00448 cheY-homologous receiver domain VSVS12_01309 SM00062 Bacterial periplasmic substrate-binding proteins VSVS12_01309 SM00387 Histidine kinase-like ATPases VSVS12_01309 SM00388 His Kinase A (phosphoacceptor) domain VSVS12_01309 SM00448 cheY-homologous receiver domain VSVS12_01315 SM00382 ATPases associated with a variety of cellular activities VSVS12_01316 SM00382 ATPases associated with a variety of cellular activities VSVS12_01330 SM00926 Molybdopterin oxidoreductase Fe4S4 domain VSVS12_01339 SM01002 Alanine dehydrogenase/PNT, C-terminal domain VSVS12_01339 SM01003 Alanine dehydrogenase/PNT, N-terminal domain VSVS12_01340 SM00344 helix_turn_helix ASNC type VSVS12_01341 SM00843 VSVS12_01341 VSVS12_01344 SM00345 helix_turn_helix gluconate operon transcriptional repressor VSVS12_01347 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VSVS12_01347 SM00382 ATPases associated with a variety of cellular activities VSVS12_01349 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VSVS12_01349 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VSVS12_01359 SM00487 DEAD-like helicases superfamily VSVS12_01359 SM00490 helicase superfamily c-terminal domain VSVS12_01359 SM00982 VSVS12_01359 VSVS12_01359 SM01058 CarD-like/TRCF domain VSVS12_01362 SM00382 ATPases associated with a variety of cellular activities VSVS12_01365 SM00849 Metallo-beta-lactamase superfamily VSVS12_01366 SM00382 ATPases associated with a variety of cellular activities VSVS12_01372 SM00763 PrkA AAA domain VSVS12_01380 SM00382 ATPases associated with a variety of cellular activities VSVS12_01381 SM00062 Bacterial periplasmic substrate-binding proteins VSVS12_01381 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. VSVS12_01384 SM00448 cheY-homologous receiver domain VSVS12_01384 SM00850 LytTr DNA-binding domain VSVS12_01385 SM00387 Histidine kinase-like ATPases VSVS12_01389 SM00382 ATPases associated with a variety of cellular activities VSVS12_01401 SM00267 diguanylate cyclase VSVS12_01401 SM01079 VSVS12_01401 VSVS12_01402 SM00479 VSVS12_01402 VSVS12_01407 SM00382 ATPases associated with a variety of cellular activities VSVS12_01407 SM00487 DEAD-like helicases superfamily VSVS12_01407 SM00490 helicase superfamily c-terminal domain VSVS12_01407 SM00847 Helicase associated domain (HA2) Add an annotation VSVS12_01417 SM00481 DNA polymerase alpha chain like domain VSVS12_01419 SM00363 S4 RNA-binding domain VSVS12_01420 SM00062 Bacterial periplasmic substrate-binding proteins VSVS12_01420 SM00091 PAS domain VSVS12_01420 SM00387 Histidine kinase-like ATPases VSVS12_01420 SM00388 His Kinase A (phosphoacceptor) domain VSVS12_01420 SM00448 cheY-homologous receiver domain VSVS12_01421 SM00448 cheY-homologous receiver domain VSVS12_01421 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VSVS12_01422 SM00387 Histidine kinase-like ATPases VSVS12_01422 SM00448 cheY-homologous receiver domain VSVS12_01432 SM01154 VSVS12_01432 VSVS12_01455 SM00363 S4 RNA-binding domain VSVS12_01465 SM00849 Metallo-beta-lactamase superfamily VSVS12_01467 SM00507 HNH nucleases VSVS12_01475 SM00882 Coenzyme A transferase VSVS12_01477 SM00822 VSVS12_01477 VSVS12_01479 SM00271 DnaJ molecular chaperone homology domain VSVS12_01491 SM00926 Molybdopterin oxidoreductase Fe4S4 domain VSVS12_01493 SM00342 helix_turn_helix, arabinose operon control protein VSVS12_01495 SM00342 helix_turn_helix, arabinose operon control protein VSVS12_01495 SM00871 Bacterial transcription activator, effector binding domain VSVS12_01498 SM00342 helix_turn_helix, arabinose operon control protein VSVS12_01499 SM00495 Chitin-binding domain type 3 VSVS12_01505 SM00267 diguanylate cyclase VSVS12_01515 SM00450 Rhodanese Homology Domain VSVS12_01520 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VSVS12_01520 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VSVS12_01521 SM00495 Chitin-binding domain type 3 VSVS12_01521 SM00636 VSVS12_01521 VSVS12_01536 SM00448 cheY-homologous receiver domain VSVS12_01537 SM00387 Histidine kinase-like ATPases VSVS12_01540 SM00729 Elongator protein 3, MiaB family, Radical SAM VSVS12_01541 SM00112 Cadherin repeats. VSVS12_01541 SM00736 Dystroglycan-type cadherin-like domains. VSVS12_01570 SM00671 Sel1-like repeats. VSVS12_01578 SM00062 Bacterial periplasmic substrate-binding proteins VSVS12_01579 SM00382 ATPases associated with a variety of cellular activities VSVS12_01581 SM00347 helix_turn_helix multiple antibiotic resistance protein VSVS12_01587 SM00345 helix_turn_helix gluconate operon transcriptional repressor VSVS12_01587 SM00866 VSVS12_01587 VSVS12_01594 SM00387 Histidine kinase-like ATPases VSVS12_01595 SM00448 cheY-homologous receiver domain VSVS12_01596 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VSVS12_01604 SM00903 Flavin reductase like domain VSVS12_01608 SM00855 Phosphoglycerate mutase family VSVS12_01612 SM00382 ATPases associated with a variety of cellular activities VSVS12_01624 SM00028 Tetratricopeptide repeats VSVS12_01631 SM00062 Bacterial periplasmic substrate-binding proteins VSVS12_01631 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VSVS12_01634 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VSVS12_01634 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VSVS12_01637 SM00028 Tetratricopeptide repeats VSVS12_01637 SM00267 diguanylate cyclase VSVS12_01643 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase VSVS12_01644 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VSVS12_01652 SM00062 Bacterial periplasmic substrate-binding proteins VSVS12_01658 SM00316 Ribosomal protein S1-like RNA-binding domain VSVS12_01662 SM00382 ATPases associated with a variety of cellular activities VSVS12_01664 SM00945 ProQ/FINO family VSVS12_01665 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VSVS12_01665 SM00245 tail specific protease VSVS12_01672 SM00981 VSVS12_01672 VSVS12_01674 SM00382 ATPases associated with a variety of cellular activities VSVS12_01690 SM00100 Cyclic nucleotide-monophosphate binding domain VSVS12_01690 SM00419 helix_turn_helix, cAMP Regulatory protein VSVS12_01696 SM00382 ATPases associated with a variety of cellular activities VSVS12_01706 SM00926 Molybdopterin oxidoreductase Fe4S4 domain VSVS12_01713 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VSVS12_01713 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VSVS12_01714 SM00382 ATPases associated with a variety of cellular activities VSVS12_01716 SM00829 Enoylreductase VSVS12_01720 SM00387 Histidine kinase-like ATPases VSVS12_01720 SM00388 His Kinase A (phosphoacceptor) domain VSVS12_01721 SM00382 ATPases associated with a variety of cellular activities VSVS12_01721 SM00448 cheY-homologous receiver domain VSVS12_01724 SM00382 ATPases associated with a variety of cellular activities VSVS12_01726 SM00852 Probable molybdopterin binding domain VSVS12_01729 SM01144 VSVS12_01729 VSVS12_01731 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VSVS12_01731 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VSVS12_01747 SM00788 Adenylosuccinate synthetase VSVS12_01753 SM00729 Elongator protein 3, MiaB family, Radical SAM VSVS12_01771 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VSVS12_01771 SM00387 Histidine kinase-like ATPases VSVS12_01771 SM00388 His Kinase A (phosphoacceptor) domain VSVS12_01771 SM00448 cheY-homologous receiver domain VSVS12_01772 SM00382 ATPases associated with a variety of cellular activities VSVS12_01772 SM00448 cheY-homologous receiver domain VSVS12_01787 SM00267 diguanylate cyclase VSVS12_01788 SM00360 RNA recognition motif VSVS12_01790 SM00052 Putative diguanylate phosphodiesterase VSVS12_01790 SM00267 diguanylate cyclase VSVS12_01790 SM01049 VSVS12_01790 VSVS12_01793 SM00267 diguanylate cyclase VSVS12_01795 SM00382 ATPases associated with a variety of cellular activities VSVS12_01797 SM00062 Bacterial periplasmic substrate-binding proteins VSVS12_01806 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VSVS12_01806 SM00387 Histidine kinase-like ATPases VSVS12_01806 SM00388 His Kinase A (phosphoacceptor) domain VSVS12_01807 SM00448 cheY-homologous receiver domain VSVS12_01807 SM00862 Transcriptional regulatory protein, C terminal VSVS12_01816 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VSVS12_01816 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VSVS12_01819 SM00434 DNA Topoisomerase IV VSVS12_01825 SM00852 Probable molybdopterin binding domain VSVS12_01836 SM00382 ATPases associated with a variety of cellular activities VSVS12_01839 SM00052 Putative diguanylate phosphodiesterase VSVS12_01849 SM00363 S4 RNA-binding domain VSVS12_01850 SM00487 DEAD-like helicases superfamily VSVS12_01850 SM00490 helicase superfamily c-terminal domain VSVS12_01852 SM00448 cheY-homologous receiver domain VSVS12_01852 SM00862 Transcriptional regulatory protein, C terminal VSVS12_01853 SM00387 Histidine kinase-like ATPases VSVS12_01855 SM00342 helix_turn_helix, arabinose operon control protein VSVS12_01864 SM00052 Putative diguanylate phosphodiesterase VSVS12_01864 SM00267 diguanylate cyclase VSVS12_01868 SM00354 helix_turn _helix lactose operon repressor VSVS12_01873 SM00421 helix_turn_helix, Lux Regulon VSVS12_01873 SM00448 cheY-homologous receiver domain VSVS12_01874 SM00387 Histidine kinase-like ATPases VSVS12_01874 SM01049 VSVS12_01874 VSVS12_01880 SM00849 Metallo-beta-lactamase superfamily VSVS12_01892 SM00091 PAS domain VSVS12_01892 SM00382 ATPases associated with a variety of cellular activities VSVS12_01898 SM00387 Histidine kinase-like ATPases VSVS12_01898 SM00388 His Kinase A (phosphoacceptor) domain VSVS12_01898 SM00448 cheY-homologous receiver domain VSVS12_01905 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VSVS12_01905 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VSVS12_01906 SM00364 Leucine-rich repeats, bacterial type VSVS12_01906 SM00369 Leucine-rich repeats, typical (most populated) subfamily VSVS12_01911 SM00327 von Willebrand factor (vWF) type A domain VSVS12_01917 SM00490 helicase superfamily c-terminal domain VSVS12_01918 SM00487 DEAD-like helicases superfamily VSVS12_01919 SM00919 Malic enzyme, NAD binding domain VSVS12_01919 SM01274 VSVS12_01919 VSVS12_01922 SM00267 diguanylate cyclase VSVS12_01927 SM00382 ATPases associated with a variety of cellular activities VSVS12_01928 SM00382 ATPases associated with a variety of cellular activities VSVS12_01931 SM00344 helix_turn_helix ASNC type VSVS12_01939 SM00487 DEAD-like helicases superfamily VSVS12_01939 SM00490 helicase superfamily c-terminal domain VSVS12_01942 SM00062 Bacterial periplasmic substrate-binding proteins VSVS12_01962 SM00671 Sel1-like repeats. VSVS12_01973 SM00487 DEAD-like helicases superfamily VSVS12_01973 SM00490 helicase superfamily c-terminal domain VSVS12_01975 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VSVS12_01977 SM00450 Rhodanese Homology Domain VSVS12_01983 SM00345 helix_turn_helix gluconate operon transcriptional repressor VSVS12_01983 SM00866 VSVS12_01983 VSVS12_01984 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VSVS12_01985 SM01266 VSVS12_01985 VSVS12_01994 SM00873 B3/4 domain VSVS12_01994 SM00874 tRNA synthetase B5 domain VSVS12_01994 SM00896 Ferredoxin-fold anticodon binding domain VSVS12_01998 SM00267 diguanylate cyclase VSVS12_02003 SM00267 diguanylate cyclase VSVS12_02010 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VSVS12_02010 SM00465 GIY-YIG type nucleases (URI domain) VSVS12_02011 SM00421 helix_turn_helix, Lux Regulon VSVS12_02011 SM00448 cheY-homologous receiver domain VSVS12_02014 SM00486 DNA polymerase type-B family VSVS12_02015 SM00052 Putative diguanylate phosphodiesterase VSVS12_02017 SM00841 Elongation factor P, C-terminal VSVS12_02017 SM01185 VSVS12_02017 VSVS12_02019 SM00411 bacterial (prokaryotic) histone like domain VSVS12_02020 SM00387 Histidine kinase-like ATPases VSVS12_02020 SM00448 cheY-homologous receiver domain VSVS12_02032 SM00382 ATPases associated with a variety of cellular activities VSVS12_02037 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VSVS12_02037 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VSVS12_02039 SM00155 Phospholipase D. Active site motifs. VSVS12_02049 SM00382 ATPases associated with a variety of cellular activities VSVS12_02053 SM00382 ATPases associated with a variety of cellular activities VSVS12_02054 SM00382 ATPases associated with a variety of cellular activities VSVS12_02055 SM01131 VSVS12_02055 VSVS12_02066 SM00528 Domain in histone-like proteins of HNS family VSVS12_02085 SM00729 Elongator protein 3, MiaB family, Radical SAM VSVS12_02085 SM00876 Biotin and Thiamin Synthesis associated domain VSVS12_02089 SM00491 VSVS12_02089 VSVS12_02093 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. VSVS12_02095 SM00382 ATPases associated with a variety of cellular activities VSVS12_02104 SM00448 cheY-homologous receiver domain VSVS12_02104 SM00862 Transcriptional regulatory protein, C terminal VSVS12_02105 SM00387 Histidine kinase-like ATPases VSVS12_02105 SM00388 His Kinase A (phosphoacceptor) domain VSVS12_02109 SM00387 Histidine kinase-like ATPases VSVS12_02109 SM00388 His Kinase A (phosphoacceptor) domain VSVS12_02109 SM00448 cheY-homologous receiver domain VSVS12_02125 SM00382 ATPases associated with a variety of cellular activities VSVS12_02130 SM00345 helix_turn_helix gluconate operon transcriptional repressor VSVS12_02130 SM00866 VSVS12_02130 VSVS12_02135 SM00387 Histidine kinase-like ATPases VSVS12_02135 SM00388 His Kinase A (phosphoacceptor) domain VSVS12_02135 SM00448 cheY-homologous receiver domain VSVS12_02139 SM00028 Tetratricopeptide repeats VSVS12_02150 SM00382 ATPases associated with a variety of cellular activities VSVS12_02151 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VSVS12_02165 SM00382 ATPases associated with a variety of cellular activities VSVS12_02165 SM01086 C-terminal, D2-small domain, of ClpB protein VSVS12_02167 SM00357 Cold shock protein domain VSVS12_02185 SM00448 cheY-homologous receiver domain VSVS12_02185 SM00862 Transcriptional regulatory protein, C terminal VSVS12_02187 SM00354 helix_turn _helix lactose operon repressor VSVS12_02194 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain VSVS12_02194 SM00437 Bacterial DNA topoisomerase I DNA-binding domain VSVS12_02194 SM00493 VSVS12_02194 VSVS12_02200 SM00316 Ribosomal protein S1-like RNA-binding domain VSVS12_02202 SM00840 VSVS12_02202 VSVS12_02205 SM00052 Putative diguanylate phosphodiesterase VSVS12_02210 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VSVS12_02221 SM00493 VSVS12_02221 VSVS12_02223 SM00382 ATPases associated with a variety of cellular activities VSVS12_02227 SM00448 cheY-homologous receiver domain VSVS12_02245 SM00382 ATPases associated with a variety of cellular activities VSVS12_02247 SM00260 Two component signalling adaptor domain VSVS12_02248 SM00260 Two component signalling adaptor domain VSVS12_02250 SM00448 cheY-homologous receiver domain VSVS12_02251 SM00073 Histidine Phosphotransfer domain VSVS12_02251 SM00260 Two component signalling adaptor domain VSVS12_02251 SM00387 Histidine kinase-like ATPases VSVS12_02251 SM01231 VSVS12_02251 VSVS12_02253 SM00448 cheY-homologous receiver domain VSVS12_02256 SM00382 ATPases associated with a variety of cellular activities VSVS12_02256 SM00962 SRP54-type protein, GTPase domain VSVS12_02258 SM00855 Phosphoglycerate mutase family VSVS12_02261 SM00836 DALR anticodon binding domain VSVS12_02261 SM01016 Arginyl tRNA synthetase N terminal dom VSVS12_02265 SM00899 VSVS12_02265 VSVS12_02266 SM00342 helix_turn_helix, arabinose operon control protein VSVS12_02268 SM00382 ATPases associated with a variety of cellular activities VSVS12_02277 SM00859 Semialdehyde dehydrogenase, NAD binding domain VSVS12_02279 SM00825 Beta-ketoacyl synthase VSVS12_02283 SM00671 Sel1-like repeats. VSVS12_02290 SM00463 Small MutS-related domain VSVS12_02301 SM00382 ATPases associated with a variety of cellular activities VSVS12_02306 SM00382 ATPases associated with a variety of cellular activities VSVS12_02306 SM00448 cheY-homologous receiver domain VSVS12_02307 SM00091 PAS domain VSVS12_02307 SM00387 Histidine kinase-like ATPases VSVS12_02307 SM00388 His Kinase A (phosphoacceptor) domain VSVS12_02308 SM00382 ATPases associated with a variety of cellular activities VSVS12_02336 SM00028 Tetratricopeptide repeats VSVS12_02337 SM00267 diguanylate cyclase VSVS12_02339 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs VSVS12_02339 SM00475 5'-3' exonuclease VSVS12_02347 SM00981 VSVS12_02347 VSVS12_02352 SM00861 Transketolase, pyrimidine binding domain VSVS12_02362 SM00881 CoA binding domain VSVS12_02365 SM00861 Transketolase, pyrimidine binding domain VSVS12_02391 SM00463 Small MutS-related domain VSVS12_02392 SM00363 S4 RNA-binding domain VSVS12_02400 SM01211 VSVS12_02400 VSVS12_02401 SM00062 Bacterial periplasmic substrate-binding proteins VSVS12_02404 SM01091 Transporter associated domain VSVS12_02411 SM00271 DnaJ molecular chaperone homology domain VSVS12_02426 SM00507 HNH nucleases VSVS12_02432 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VSVS12_02433 SM00849 Metallo-beta-lactamase superfamily VSVS12_02433 SM01027 Beta-Casp domain VSVS12_02442 SM00116 Domain in cystathionine beta-synthase and other proteins. VSVS12_02442 SM01240 VSVS12_02442 VSVS12_02446 SM00382 ATPases associated with a variety of cellular activities VSVS12_02447 SM00564 beta-propeller repeat VSVS12_02455 SM00925 MltA specific insert domain VSVS12_02473 SM00382 ATPases associated with a variety of cellular activities VSVS12_02478 SM00091 PAS domain VSVS12_02478 SM00387 Histidine kinase-like ATPases VSVS12_02478 SM00388 His Kinase A (phosphoacceptor) domain VSVS12_02479 SM00448 cheY-homologous receiver domain VSVS12_02479 SM00862 Transcriptional regulatory protein, C terminal VSVS12_02488 SM01323 VSVS12_02488 VSVS12_02491 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VSVS12_02491 SM01358 VSVS12_02491 VSVS12_02492 SM00116 Domain in cystathionine beta-synthase and other proteins. VSVS12_02514 SM00382 ATPases associated with a variety of cellular activities VSVS12_02518 SM00858 VSVS12_02518 VSVS12_02526 SM00838 Elongation factor G C-terminus VSVS12_02526 SM00889 Elongation factor G, domain IV VSVS12_02527 SM00382 ATPases associated with a variety of cellular activities VSVS12_02535 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain VSVS12_02536 SM01133 VSVS12_02536 VSVS12_02544 SM00986 Uracil DNA glycosylase superfamily VSVS12_02544 SM00987 UreE urease accessory protein, C-terminal domain VSVS12_02545 SM00518 AP endonuclease family 2 VSVS12_02550 SM00851 MGS-like domain VSVS12_02550 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VSVS12_02551 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain VSVS12_02554 SM00957 SecA DEAD-like domain VSVS12_02554 SM00958 SecA preprotein cross-linking domain VSVS12_02557 SM00864 Tubulin/FtsZ family, GTPase domain VSVS12_02557 SM00865 Tubulin/FtsZ family, C-terminal domain VSVS12_02558 SM00842 Cell division protein FtsA VSVS12_02574 SM00749 bacterial OsmY and nodulation domain VSVS12_02586 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VSVS12_02587 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VSVS12_02588 SM00434 DNA Topoisomerase IV VSVS12_02589 SM00387 Histidine kinase-like ATPases VSVS12_02589 SM00433 TopoisomeraseII VSVS12_02596 SM00382 ATPases associated with a variety of cellular activities VSVS12_02598 SM00937 VSVS12_02598 VSVS12_02601 SM00487 DEAD-like helicases superfamily VSVS12_02601 SM00490 helicase superfamily c-terminal domain VSVS12_02607 SM00052 Putative diguanylate phosphodiesterase VSVS12_02607 SM00091 PAS domain VSVS12_02607 SM00267 diguanylate cyclase VSVS12_02613 SM00347 helix_turn_helix multiple antibiotic resistance protein VSVS12_02614 SM00028 Tetratricopeptide repeats VSVS12_02615 SM00316 Ribosomal protein S1-like RNA-binding domain VSVS12_02615 SM00322 K homology RNA-binding domain VSVS12_02616 SM01387 VSVS12_02616 VSVS12_02627 SM00448 cheY-homologous receiver domain VSVS12_02627 SM00862 Transcriptional regulatory protein, C terminal VSVS12_02630 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VSVS12_02630 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VSVS12_02632 SM00880 VSVS12_02632 VSVS12_02632 SM01118 VSVS12_02632 VSVS12_02635 SM00287 Bacterial SH3 domain homologues VSVS12_02637 SM00382 ATPases associated with a variety of cellular activities VSVS12_02639 SM01192 VSVS12_02639 VSVS12_02639 SM01193 VSVS12_02639 VSVS12_02642 SM00954 Region found in RelA / SpoT proteins VSVS12_02644 SM00073 Histidine Phosphotransfer domain VSVS12_02644 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VSVS12_02644 SM00387 Histidine kinase-like ATPases VSVS12_02644 SM00388 His Kinase A (phosphoacceptor) domain VSVS12_02644 SM00448 cheY-homologous receiver domain VSVS12_02649 SM00358 Double-stranded RNA binding motif VSVS12_02649 SM00535 Ribonuclease III family VSVS12_02651 SM00838 Elongation factor G C-terminus VSVS12_02673 SM00917 LeuA allosteric (dimerisation) domain VSVS12_02674 SM01329 VSVS12_02674 VSVS12_02685 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VSVS12_02687 SM00354 helix_turn _helix lactose operon repressor VSVS12_02693 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VSVS12_02744 SM00829 Enoylreductase VSVS12_02758 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain VSVS12_02759 SM00382 ATPases associated with a variety of cellular activities VSVS12_02761 SM00533 DNA-binding domain of DNA mismatch repair MUTS family VSVS12_02761 SM00534 ATPase domain of DNA mismatch repair MUTS family VSVS12_02773 SM00382 ATPases associated with a variety of cellular activities VSVS12_02773 SM00962 SRP54-type protein, GTPase domain VSVS12_02773 SM00963 SRP54-type protein, helical bundle domain VSVS12_02775 SM01091 Transporter associated domain VSVS12_02777 SM00257 Lysin motif VSVS12_02786 SM00905 Dihydroneopterin aldolase VSVS12_02787 SM01207 VSVS12_02787 VSVS12_02792 SM00400 zinc finger VSVS12_02792 SM00493 VSVS12_02792 VSVS12_02792 SM00766 DNA primase DnaG DnaB-binding VSVS12_02798 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VSVS12_02801 SM00448 cheY-homologous receiver domain VSVS12_02822 SM00267 diguanylate cyclase VSVS12_02825 SM00563 Phosphate acyltransferases VSVS12_02828 SM00829 Enoylreductase VSVS12_02832 SM00421 helix_turn_helix, Lux Regulon VSVS12_02834 SM00420 helix_turn_helix, Deoxyribose operon repressor VSVS12_02834 SM01134 VSVS12_02834 VSVS12_02842 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VSVS12_02844 SM00861 Transketolase, pyrimidine binding domain VSVS12_02848 SM00731 SprT homologues. VSVS12_02853 SM00732 Likely ribonuclease with RNase H fold. VSVS12_02856 SM00382 ATPases associated with a variety of cellular activities VSVS12_02872 SM00382 ATPases associated with a variety of cellular activities VSVS12_02881 SM01005 Alanine racemase, C-terminal domain VSVS12_02891 SM00838 Elongation factor G C-terminus VSVS12_02891 SM00889 Elongation factor G, domain IV VSVS12_02899 SM00320 WD40 repeats VSVS12_02902 SM00244 prohibitin homologues VSVS12_02903 SM00244 prohibitin homologues VSVS12_02907 SM00853 MutL C terminal dimerisation domain VSVS12_02907 SM01340 VSVS12_02907 VSVS12_02908 SM00257 Lysin motif VSVS12_02908 SM00646 VSVS12_02908 VSVS12_02923 SM00479 VSVS12_02923 VSVS12_02935 SM00663 RNA polymerase I subunit A N-terminus VSVS12_02940 SM00649 Ribosomal protein L11/L12 VSVS12_02941 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. VSVS12_02941 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. VSVS12_02955 SM00841 Elongation factor P, C-terminal VSVS12_02955 SM01185 VSVS12_02955 VSVS12_02962 SM00448 cheY-homologous receiver domain VSVS12_02962 SM00862 Transcriptional regulatory protein, C terminal VSVS12_02963 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VSVS12_02963 SM00387 Histidine kinase-like ATPases VSVS12_02963 SM00388 His Kinase A (phosphoacceptor) domain VSVS12_02969 SM00421 helix_turn_helix, Lux Regulon VSVS12_02969 SM00448 cheY-homologous receiver domain VSVS12_02974 SM00387 Histidine kinase-like ATPases VSVS12_02974 SM00388 His Kinase A (phosphoacceptor) domain VSVS12_02974 SM00448 cheY-homologous receiver domain VSVS12_02977 SM00479 VSVS12_02977 VSVS12_02981 SM00878 Biotin carboxylase C-terminal domain VSVS12_02985 SM00267 diguanylate cyclase VSVS12_02986 SM00422 helix_turn_helix, mercury resistance VSVS12_02987 SM00798 AICARFT/IMPCHase bienzyme VSVS12_02987 SM00851 MGS-like domain VSVS12_02988 SM01209 VSVS12_02988 VSVS12_02988 SM01210 VSVS12_02988 VSVS12_02990 SM00411 bacterial (prokaryotic) histone like domain VSVS12_03010 SM00360 RNA recognition motif VSVS12_03022 SM00382 ATPases associated with a variety of cellular activities VSVS12_03024 SM00344 helix_turn_helix ASNC type VSVS12_03029 SM00342 helix_turn_helix, arabinose operon control protein VSVS12_03032 SM00421 helix_turn_helix, Lux Regulon VSVS12_03037 SM00052 Putative diguanylate phosphodiesterase VSVS12_03037 SM00267 diguanylate cyclase VSVS12_03038 SM00382 ATPases associated with a variety of cellular activities VSVS12_03046 SM00671 Sel1-like repeats. VSVS12_03057 SM00347 helix_turn_helix multiple antibiotic resistance protein VSVS12_03070 SM00487 DEAD-like helicases superfamily VSVS12_03070 SM00490 helicase superfamily c-terminal domain VSVS12_03073 SM00342 helix_turn_helix, arabinose operon control protein VSVS12_03073 SM01009 AlkA N-terminal domain VSVS12_03086 SM00642 Alpha-amylase domain VSVS12_03089 SM00421 helix_turn_helix, Lux Regulon VSVS12_03091 SM00028 Tetratricopeptide repeats VSVS12_03092 SM00495 Chitin-binding domain type 3 VSVS12_03092 SM00636 VSVS12_03092 VSVS12_03106 SM00382 ATPases associated with a variety of cellular activities VSVS12_03111 SM00422 helix_turn_helix, mercury resistance VSVS12_03117 SM00481 DNA polymerase alpha chain like domain VSVS12_03124 SM01059 Chloramphenicol acetyltransferase VSVS12_03129 SM00671 Sel1-like repeats. VSVS12_03130 SM01022 VSVS12_03130 VSVS12_03135 SM00345 helix_turn_helix gluconate operon transcriptional repressor VSVS12_03135 SM00895 VSVS12_03135 VSVS12_03142 SM01130 VSVS12_03142 VSVS12_03150 SM01321 VSVS12_03150 VSVS12_03153 SM01060 VSVS12_03153 VSVS12_03160 SM00861 Transketolase, pyrimidine binding domain VSVS12_03166 SM00420 helix_turn_helix, Deoxyribose operon repressor VSVS12_03166 SM01134 VSVS12_03166 VSVS12_03173 SM00421 helix_turn_helix, Lux Regulon VSVS12_03176 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VSVS12_03176 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VSVS12_03176 SM01049 VSVS12_03176 VSVS12_03186 SM00382 ATPases associated with a variety of cellular activities VSVS12_03187 SM00382 ATPases associated with a variety of cellular activities VSVS12_03191 SM00470 ParB-like nuclease domain VSVS12_03196 SM00331 Sigma factor PP2C-like phosphatases VSVS12_03196 SM00448 cheY-homologous receiver domain VSVS12_03198 SM00857 Resolvase, N terminal domain VSVS12_03255 SM00530 Helix-turn-helix XRE-family like proteins VSVS12_03272 SM00563 Phosphate acyltransferases VSVS12_03294 SM00014 Acid phosphatase homologues VSVS12_03298 SM00420 helix_turn_helix, Deoxyribose operon repressor VSVS12_03298 SM01134 VSVS12_03298 VSVS12_03302 SM01007 Class II Aldolase and Adducin N-terminal domain VSVS12_03311 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VSVS12_03313 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VSVS12_03313 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VSVS12_03316 SM00530 Helix-turn-helix XRE-family like proteins VSVS12_03318 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VSVS12_03318 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VSVS12_03319 SM00479 VSVS12_03319 VSVS12_03327 SM00866 VSVS12_03327 VSVS12_03334 SM00872 Alpha mannosidase, middle domain VSVS12_03335 SM00642 Alpha-amylase domain VSVS12_03345 SM00369 Leucine-rich repeats, typical (most populated) subfamily VSVS12_03349 SM00382 ATPases associated with a variety of cellular activities VSVS12_03359 SM00487 DEAD-like helicases superfamily VSVS12_03359 SM00490 helicase superfamily c-terminal domain VSVS12_03370 SM00530 Helix-turn-helix XRE-family like proteins VSVS12_03375 SM00267 diguanylate cyclase VSVS12_03375 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VSVS12_03379 SM00342 helix_turn_helix, arabinose operon control protein VSVS12_03379 SM00871 Bacterial transcription activator, effector binding domain VSVS12_03383 SM00382 ATPases associated with a variety of cellular activities VSVS12_03388 SM00345 helix_turn_helix gluconate operon transcriptional repressor VSVS12_03388 SM00866 VSVS12_03388 VSVS12_03393 SM00900 VSVS12_03393 VSVS12_03400 SM00342 helix_turn_helix, arabinose operon control protein VSVS12_03402 SM00900 VSVS12_03402 VSVS12_03405 SM00028 Tetratricopeptide repeats VSVS12_03406 SM00342 helix_turn_helix, arabinose operon control protein VSVS12_03408 SM00382 ATPases associated with a variety of cellular activities VSVS12_03411 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VSVS12_03411 SM00267 diguanylate cyclase VSVS12_03423 SM00090 RIO-like kinase VSVS12_03424 SM00642 Alpha-amylase domain VSVS12_03429 SM00342 helix_turn_helix, arabinose operon control protein VSVS12_03430 SM00450 Rhodanese Homology Domain VSVS12_03436 SM00267 diguanylate cyclase VSVS12_03437 SM00642 Alpha-amylase domain VSVS12_03441 SM00387 Histidine kinase-like ATPases VSVS12_03442 SM00448 cheY-homologous receiver domain VSVS12_03442 SM00862 Transcriptional regulatory protein, C terminal VSVS12_03443 SM00736 Dystroglycan-type cadherin-like domains. VSVS12_03444 SM00422 helix_turn_helix, mercury resistance VSVS12_03448 SM00382 ATPases associated with a variety of cellular activities VSVS12_03452 SM00267 diguanylate cyclase VSVS12_03452 SM01079 VSVS12_03452 VSVS12_03454 SM00448 cheY-homologous receiver domain VSVS12_03454 SM00862 Transcriptional regulatory protein, C terminal VSVS12_03455 SM00387 Histidine kinase-like ATPases VSVS12_03455 SM00388 His Kinase A (phosphoacceptor) domain VSVS12_03459 SM00849 Metallo-beta-lactamase superfamily VSVS12_03460 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VSVS12_03460 SM00382 ATPases associated with a variety of cellular activities VSVS12_03467 SM00671 Sel1-like repeats. VSVS12_03474 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain VSVS12_03476 SM01091 Transporter associated domain VSVS12_03477 SM00116 Domain in cystathionine beta-synthase and other proteins. VSVS12_03479 SM00342 helix_turn_helix, arabinose operon control protein VSVS12_03481 SM00849 Metallo-beta-lactamase superfamily VSVS12_03483 SM01321 VSVS12_03483 VSVS12_03490 SM00267 diguanylate cyclase VSVS12_03493 SM01079 VSVS12_03493 VSVS12_03511 SM00354 helix_turn _helix lactose operon repressor VSVS12_03515 SM00487 DEAD-like helicases superfamily VSVS12_03515 SM00490 helicase superfamily c-terminal domain VSVS12_03517 SM00316 Ribosomal protein S1-like RNA-binding domain VSVS12_03517 SM00357 Cold shock protein domain VSVS12_03517 SM00955 VSVS12_03517 VSVS12_03521 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VSVS12_03522 SM00387 Histidine kinase-like ATPases VSVS12_03522 SM00388 His Kinase A (phosphoacceptor) domain VSVS12_03522 SM00448 cheY-homologous receiver domain VSVS12_03530 SM00342 helix_turn_helix, arabinose operon control protein VSVS12_03531 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VSVS12_03531 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VSVS12_03534 SM00642 Alpha-amylase domain VSVS12_03540 SM00448 cheY-homologous receiver domain VSVS12_03543 SM01240 VSVS12_03543 VSVS12_03544 SM00091 PAS domain VSVS12_03544 SM00387 Histidine kinase-like ATPases VSVS12_03545 SM00448 cheY-homologous receiver domain VSVS12_03551 SM00822 VSVS12_03551 VSVS12_03553 SM00100 Cyclic nucleotide-monophosphate binding domain VSVS12_03553 SM00116 Domain in cystathionine beta-synthase and other proteins. VSVS12_03554 SM00479 VSVS12_03554 VSVS12_03556 SM00387 Histidine kinase-like ATPases VSVS12_03556 SM00388 His Kinase A (phosphoacceptor) domain VSVS12_03556 SM00448 cheY-homologous receiver domain VSVS12_03559 SM00382 ATPases associated with a variety of cellular activities VSVS12_03564 SM00331 Sigma factor PP2C-like phosphatases VSVS12_03564 SM00448 cheY-homologous receiver domain VSVS12_03576 SM00448 cheY-homologous receiver domain VSVS12_03598 SM00267 diguanylate cyclase VSVS12_03599 SM00260 Two component signalling adaptor domain VSVS12_03599 SM00448 cheY-homologous receiver domain VSVS12_03605 SM00382 ATPases associated with a variety of cellular activities VSVS12_03606 SM00327 von Willebrand factor (vWF) type A domain VSVS12_03608 SM00347 helix_turn_helix multiple antibiotic resistance protein VSVS12_03616 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VSVS12_03627 SM00387 Histidine kinase-like ATPases VSVS12_03627 SM00448 cheY-homologous receiver domain VSVS12_03637 SM00420 helix_turn_helix, Deoxyribose operon repressor VSVS12_03637 SM01134 VSVS12_03637 VSVS12_03654 SM00829 Enoylreductase VSVS12_03665 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VSVS12_03665 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VSVS12_03671 SM00052 Putative diguanylate phosphodiesterase VSVS12_03673 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VSVS12_03678 SM01350 VSVS12_03678 VSVS12_03688 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VSVS12_03688 SM00387 Histidine kinase-like ATPases VSVS12_03688 SM00388 His Kinase A (phosphoacceptor) domain VSVS12_03689 SM00448 cheY-homologous receiver domain VSVS12_03696 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VSVS12_03696 SM00387 Histidine kinase-like ATPases VSVS12_03696 SM00388 His Kinase A (phosphoacceptor) domain VSVS12_03697 SM00448 cheY-homologous receiver domain VSVS12_03697 SM00862 Transcriptional regulatory protein, C terminal VSVS12_03702 SM00062 Bacterial periplasmic substrate-binding proteins VSVS12_03702 SM00267 diguanylate cyclase VSVS12_03704 SM00530 Helix-turn-helix XRE-family like proteins VSVS12_03711 SM00382 ATPases associated with a variety of cellular activities VSVS12_03712 SM00382 ATPases associated with a variety of cellular activities VSVS12_03723 SM00382 ATPases associated with a variety of cellular activities VSVS12_03724 SM00052 Putative diguanylate phosphodiesterase VSVS12_03724 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VSVS12_03724 SM00091 PAS domain VSVS12_03724 SM00267 diguanylate cyclase VSVS12_03725 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VSVS12_03725 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VSVS12_03726 SM00642 Alpha-amylase domain VSVS12_03729 SM00421 helix_turn_helix, Lux Regulon VSVS12_03745 SM00530 Helix-turn-helix XRE-family like proteins VSVS12_03760 SM00028 Tetratricopeptide repeats VSVS12_03762 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VSVS12_03767 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VSVS12_03772 SM00271 DnaJ molecular chaperone homology domain VSVS12_03774 SM00052 Putative diguanylate phosphodiesterase VSVS12_03774 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VSVS12_03774 SM00267 diguanylate cyclase VSVS12_03777 SM00382 ATPases associated with a variety of cellular activities VSVS12_03780 SM00797 Allophanate hydrolase subunit 2 VSVS12_03781 SM00796 Allophanate hydrolase subunit 1 VSVS12_03788 SM00861 Transketolase, pyrimidine binding domain VSVS12_03791 SM00636 VSVS12_03791 VSVS12_03792 SM00450 Rhodanese Homology Domain VSVS12_03795 SM00852 Probable molybdopterin binding domain VSVS12_03797 SM00487 DEAD-like helicases superfamily VSVS12_03797 SM00490 helicase superfamily c-terminal domain VSVS12_03805 SM00342 helix_turn_helix, arabinose operon control protein VSVS12_03808 SM00347 helix_turn_helix multiple antibiotic resistance protein VSVS12_03810 SM00479 VSVS12_03810 VSVS12_03811 SM00100 Cyclic nucleotide-monophosphate binding domain VSVS12_03811 SM00116 Domain in cystathionine beta-synthase and other proteins. VSVS12_03815 SM00487 DEAD-like helicases superfamily VSVS12_03815 SM00490 helicase superfamily c-terminal domain VSVS12_03819 SM00822 VSVS12_03819 VSVS12_03844 SM00387 Histidine kinase-like ATPases VSVS12_03844 SM00388 His Kinase A (phosphoacceptor) domain VSVS12_03844 SM00448 cheY-homologous receiver domain VSVS12_03850 SM00851 MGS-like domain VSVS12_03852 SM00073 Histidine Phosphotransfer domain VSVS12_03852 SM00387 Histidine kinase-like ATPases VSVS12_03852 SM00388 His Kinase A (phosphoacceptor) domain VSVS12_03852 SM00448 cheY-homologous receiver domain VSVS12_03860 SM00354 helix_turn _helix lactose operon repressor VSVS12_03861 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VSVS12_03861 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VSVS12_03867 SM00382 ATPases associated with a variety of cellular activities VSVS12_03869 SM00267 diguanylate cyclase VSVS12_03869 SM00448 cheY-homologous receiver domain VSVS12_03871 SM00267 diguanylate cyclase VSVS12_03874 SM01002 Alanine dehydrogenase/PNT, C-terminal domain VSVS12_03874 SM01003 Alanine dehydrogenase/PNT, N-terminal domain VSVS12_03876 SM00387 Histidine kinase-like ATPases VSVS12_03876 SM00388 His Kinase A (phosphoacceptor) domain VSVS12_03877 SM00448 cheY-homologous receiver domain VSVS12_03877 SM00862 Transcriptional regulatory protein, C terminal VSVS12_03885 SM00530 Helix-turn-helix XRE-family like proteins VSVS12_03893 SM00530 Helix-turn-helix XRE-family like proteins VSVS12_03899 SM00530 Helix-turn-helix XRE-family like proteins VSVS12_03907 SM00881 CoA binding domain VSVS12_03915 SM00782 PhnA Zinc-Ribbon VSVS12_03916 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VSVS12_03925 SM00867 YceI-like domain VSVS12_03930 SM00052 Putative diguanylate phosphodiesterase VSVS12_03932 SM00421 helix_turn_helix, Lux Regulon VSVS12_03932 SM00448 cheY-homologous receiver domain VSVS12_03933 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VSVS12_03933 SM00387 Histidine kinase-like ATPases VSVS12_03936 SM00926 Molybdopterin oxidoreductase Fe4S4 domain VSVS12_03941 SM00387 Histidine kinase-like ATPases VSVS12_03941 SM00388 His Kinase A (phosphoacceptor) domain VSVS12_03942 SM00448 cheY-homologous receiver domain VSVS12_03954 SM00671 Sel1-like repeats. VSVS12_03956 SM00052 Putative diguanylate phosphodiesterase VSVS12_03956 SM00091 PAS domain VSVS12_03956 SM00267 diguanylate cyclase VSVS12_03958 SM00244 prohibitin homologues VSVS12_03962 SM00487 DEAD-like helicases superfamily VSVS12_03962 SM00490 helicase superfamily c-terminal domain VSVS12_03968 SM00487 DEAD-like helicases superfamily VSVS12_03968 SM00490 helicase superfamily c-terminal domain VSVS12_03971 SM00487 DEAD-like helicases superfamily VSVS12_03971 SM00490 helicase superfamily c-terminal domain VSVS12_03975 SM00342 helix_turn_helix, arabinose operon control protein VSVS12_03976 SM00422 helix_turn_helix, mercury resistance VSVS12_03977 SM00382 ATPases associated with a variety of cellular activities VSVS12_03982 SM00052 Putative diguanylate phosphodiesterase VSVS12_03982 SM00267 diguanylate cyclase VSVS12_03983 SM00382 ATPases associated with a variety of cellular activities VSVS12_03996 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VSVS12_04024 SM00952 VSVS12_04024 VSVS12_04026 SM00974 VSVS12_04026 VSVS12_04098 SM00354 helix_turn _helix lactose operon repressor VSVS12_04101 SM00640 Glycosyl hydrolases family 32 VSVS12_04111 SM00342 helix_turn_helix, arabinose operon control protein VSVS12_04116 SM00640 Glycosyl hydrolases family 32 VSVS12_04117 SM00382 ATPases associated with a variety of cellular activities VSVS12_04127 SM00382 ATPases associated with a variety of cellular activities VSVS12_04135 SM00342 helix_turn_helix, arabinose operon control protein VSVS12_04139 SM00342 helix_turn_helix, arabinose operon control protein VSVS12_04150 SM00327 von Willebrand factor (vWF) type A domain VSVS12_04151 SM00028 Tetratricopeptide repeats VSVS12_04154 SM00267 diguanylate cyclase VSVS12_04160 SM00344 helix_turn_helix ASNC type VSVS12_04162 SM00342 helix_turn_helix, arabinose operon control protein VSVS12_04168 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VSVS12_04168 SM00267 diguanylate cyclase VSVS12_04172 SM00345 helix_turn_helix gluconate operon transcriptional repressor VSVS12_04172 SM00895 VSVS12_04172 VSVS12_04175 SM00382 ATPases associated with a variety of cellular activities VSVS12_04182 SM00354 helix_turn _helix lactose operon repressor VSVS12_04207 SM00342 helix_turn_helix, arabinose operon control protein VSVS12_04208 SM00052 Putative diguanylate phosphodiesterase VSVS12_04217 SM00052 Putative diguanylate phosphodiesterase VSVS12_04234 SM00342 helix_turn_helix, arabinose operon control protein VSVS12_04240 SM00345 helix_turn_helix gluconate operon transcriptional repressor VSVS12_04241 SM00357 Cold shock protein domain VSVS12_04247 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VSVS12_04251 SM01321 VSVS12_04251 VSVS12_04255 SM00936 Penicillin-binding protein 5, C-terminal domain VSVS12_04257 SM00357 Cold shock protein domain VSVS12_04258 SM01322 VSVS12_04258 VSVS12_04261 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VSVS12_04261 SM00382 ATPases associated with a variety of cellular activities VSVS12_04274 SM00267 diguanylate cyclase VSVS12_04275 SM00052 Putative diguanylate phosphodiesterase VSVS12_04279 SM00421 helix_turn_helix, Lux Regulon VSVS12_04280 SM00020 Trypsin-like serine protease VSVS12_04282 SM00530 Helix-turn-helix XRE-family like proteins VSVS12_04288 SM00267 diguanylate cyclase VSVS12_04294 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain VSVS12_04295 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VSVS12_04295 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VSVS12_04297 SM00344 helix_turn_helix ASNC type VSVS12_04301 SM00829 Enoylreductase VSVS12_04305 SM01266 VSVS12_04305 VSVS12_04308 SM01022 VSVS12_04308 VSVS12_04320 SM00100 Cyclic nucleotide-monophosphate binding domain VSVS12_04327 SM00357 Cold shock protein domain VSVS12_04330 SM00342 helix_turn_helix, arabinose operon control protein VSVS12_04337 SM00487 DEAD-like helicases superfamily VSVS12_04337 SM00490 helicase superfamily c-terminal domain VSVS12_04342 SM00382 ATPases associated with a variety of cellular activities VSVS12_04360 SM00257 Lysin motif VSVS12_04362 SM00422 helix_turn_helix, mercury resistance VSVS12_04366 SM00028 Tetratricopeptide repeats VSVS12_04367 SM00267 diguanylate cyclase VSVS12_04371 SM00382 ATPases associated with a variety of cellular activities VSVS12_04381 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain VSVS12_04381 SM00437 Bacterial DNA topoisomerase I DNA-binding domain VSVS12_04381 SM00493 VSVS12_04381 VSVS12_04392 SM00382 ATPases associated with a variety of cellular activities VSVS12_04422 SM00411 bacterial (prokaryotic) histone like domain VSVS12_04465 SM00487 DEAD-like helicases superfamily VSVS12_04492 SM00857 Resolvase, N terminal domain VSVS12_04496 SM00382 ATPases associated with a variety of cellular activities VSVS12_04507 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain VSVS12_04507 SM00437 Bacterial DNA topoisomerase I DNA-binding domain VSVS12_04507 SM00493 VSVS12_04507 VSVS12_04518 SM00382 ATPases associated with a variety of cellular activities VSVS12_04539 SM00862 Transcriptional regulatory protein, C terminal VSVS12_04546 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family VSVS12_04547 SM01007 Class II Aldolase and Adducin N-terminal domain VSVS12_04551 SM00420 helix_turn_helix, Deoxyribose operon repressor VSVS12_04551 SM01134 VSVS12_04551 VSVS12_04553 SM00458 Ricin-type beta-trefoil VSVS12_04556 SM00857 Resolvase, N terminal domain VSVS12_04557 SM00857 Resolvase, N terminal domain VSVS12_04568 SM00862 Transcriptional regulatory protein, C terminal VSVS12_04573 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family VSVS12_04575 SM01007 Class II Aldolase and Adducin N-terminal domain VSVS12_04578 SM00420 helix_turn_helix, Deoxyribose operon repressor VSVS12_04578 SM01134 VSVS12_04578 VSVS12_04580 SM00458 Ricin-type beta-trefoil VSVS12_04584 SM00857 Resolvase, N terminal domain VSVS12_04595 SM00857 Resolvase, N terminal domain VSVS12_04596 SM00945 ProQ/FINO family