CEQ48_00055 SM00881 CoA binding domain CEQ48_00130 SM00382 ATPases associated with a variety of cellular activities CEQ48_00180 SM00345 helix_turn_helix gluconate operon transcriptional repressor CEQ48_00180 SM00866 CEQ48_00180 CEQ48_00190 SM00382 ATPases associated with a variety of cellular activities CEQ48_00270 SM00450 Rhodanese Homology Domain CEQ48_00275 SM00636 CEQ48_00275 CEQ48_00295 SM00861 Transketolase, pyrimidine binding domain CEQ48_00385 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CEQ48_00395 SM00450 Rhodanese Homology Domain CEQ48_00790 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CEQ48_00835 SM01266 CEQ48_00835 CEQ48_00980 SM01022 CEQ48_00980 CEQ48_00990 SM00360 RNA recognition motif CEQ48_01125 SM00990 CEQ48_01125 CEQ48_01310 SM00326 Src homology 3 domains CEQ48_01380 SM00255 Toll - interleukin 1 - resistance CEQ48_01430 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CEQ48_01440 SM00530 Helix-turn-helix XRE-family like proteins CEQ48_01465 SM01057 Eukaryotic-type carbonic anhydrase CEQ48_01480 SM00936 Penicillin-binding protein 5, C-terminal domain CEQ48_01490 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CEQ48_01490 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CEQ48_01495 SM00346 helix_turn_helix isocitrate lyase regulation CEQ48_01500 SM00382 ATPases associated with a variety of cellular activities CEQ48_01540 SM00267 diguanylate cyclase CEQ48_01610 SM00342 helix_turn_helix, arabinose operon control protein CEQ48_01670 SM01266 CEQ48_01670 CEQ48_01675 SM01091 Transporter associated domain CEQ48_01695 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CEQ48_01715 SM00267 diguanylate cyclase CEQ48_01730 SM00448 cheY-homologous receiver domain CEQ48_01730 SM00850 LytTr DNA-binding domain CEQ48_01735 SM00387 Histidine kinase-like ATPases CEQ48_01755 SM00382 ATPases associated with a variety of cellular activities CEQ48_01770 SM00642 Alpha-amylase domain CEQ48_01810 SM00448 cheY-homologous receiver domain CEQ48_01830 SM00357 Cold shock protein domain CEQ48_01840 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CEQ48_01840 SM00382 ATPases associated with a variety of cellular activities CEQ48_01870 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CEQ48_01870 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CEQ48_01890 SM00327 von Willebrand factor (vWF) type A domain CEQ48_01895 SM00028 Tetratricopeptide repeats CEQ48_01915 SM00357 Cold shock protein domain CEQ48_01920 SM00267 diguanylate cyclase CEQ48_01990 SM00382 ATPases associated with a variety of cellular activities CEQ48_01990 SM00448 cheY-homologous receiver domain CEQ48_01995 SM00091 PAS domain CEQ48_01995 SM00387 Histidine kinase-like ATPases CEQ48_01995 SM00388 His Kinase A (phosphoacceptor) domain CEQ48_02000 SM00495 Chitin-binding domain type 3 CEQ48_02020 SM00354 helix_turn _helix lactose operon repressor CEQ48_02040 SM00382 ATPases associated with a variety of cellular activities CEQ48_02090 SM00382 ATPases associated with a variety of cellular activities CEQ48_02095 SM00382 ATPases associated with a variety of cellular activities CEQ48_02095 SM01086 C-terminal, D2-small domain, of ClpB protein CEQ48_02170 SM00052 Putative diguanylate phosphodiesterase CEQ48_02175 SM00450 Rhodanese Homology Domain CEQ48_02275 SM00342 helix_turn_helix, arabinose operon control protein CEQ48_02275 SM01009 AlkA N-terminal domain CEQ48_02310 SM00671 Sel1-like repeats. CEQ48_02325 SM00642 Alpha-amylase domain CEQ48_02335 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CEQ48_02335 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CEQ48_02365 SM00342 helix_turn_helix, arabinose operon control protein CEQ48_02390 SM00487 DEAD-like helicases superfamily CEQ48_02390 SM00490 helicase superfamily c-terminal domain CEQ48_02400 SM00382 ATPases associated with a variety of cellular activities CEQ48_02425 SM00342 helix_turn_helix, arabinose operon control protein CEQ48_02480 SM00052 Putative diguanylate phosphodiesterase CEQ48_02480 SM00267 diguanylate cyclase CEQ48_02515 SM00267 diguanylate cyclase CEQ48_02520 SM00382 ATPases associated with a variety of cellular activities CEQ48_02540 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CEQ48_02540 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CEQ48_02570 SM00487 DEAD-like helicases superfamily CEQ48_02570 SM00490 helicase superfamily c-terminal domain CEQ48_02580 SM00257 Lysin motif CEQ48_02590 SM00422 helix_turn_helix, mercury resistance CEQ48_02610 SM00028 Tetratricopeptide repeats CEQ48_02615 SM00267 diguanylate cyclase CEQ48_02620 SM00245 tail specific protease CEQ48_02670 SM00014 Acid phosphatase homologues CEQ48_02690 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CEQ48_02690 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CEQ48_02705 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins CEQ48_02705 SM00495 Chitin-binding domain type 3 CEQ48_02705 SM00636 CEQ48_02705 CEQ48_02780 SM00642 Alpha-amylase domain CEQ48_02795 SM00421 helix_turn_helix, Lux Regulon CEQ48_02805 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CEQ48_02805 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CEQ48_02805 SM01049 CEQ48_02805 CEQ48_02830 SM00382 ATPases associated with a variety of cellular activities CEQ48_02835 SM00382 ATPases associated with a variety of cellular activities CEQ48_02860 SM00470 ParB-like nuclease domain CEQ48_02885 SM01236 CEQ48_02885 CEQ48_02890 SM00822 CEQ48_02890 CEQ48_02900 SM00448 cheY-homologous receiver domain CEQ48_02900 SM00862 Transcriptional regulatory protein, C terminal CEQ48_02905 SM00387 Histidine kinase-like ATPases CEQ48_02905 SM00388 His Kinase A (phosphoacceptor) domain CEQ48_02915 SM00382 ATPases associated with a variety of cellular activities CEQ48_02940 SM00448 cheY-homologous receiver domain CEQ48_02945 SM00073 Histidine Phosphotransfer domain CEQ48_02945 SM00260 Two component signalling adaptor domain CEQ48_02945 SM00387 Histidine kinase-like ATPases CEQ48_02945 SM01231 CEQ48_02945 CEQ48_02950 SM00260 Two component signalling adaptor domain CEQ48_02955 SM00260 Two component signalling adaptor domain CEQ48_02960 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CEQ48_02960 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CEQ48_02965 SM00138 Methyltransferase, chemotaxis proteins CEQ48_02975 SM00448 cheY-homologous receiver domain CEQ48_02980 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CEQ48_02990 SM00331 Sigma factor PP2C-like phosphatases CEQ48_02990 SM00448 cheY-homologous receiver domain CEQ48_03005 SM00382 ATPases associated with a variety of cellular activities CEQ48_03030 SM00420 helix_turn_helix, Deoxyribose operon repressor CEQ48_03030 SM01134 CEQ48_03030 CEQ48_03045 SM00382 ATPases associated with a variety of cellular activities CEQ48_03050 SM00052 Putative diguanylate phosphodiesterase CEQ48_03050 SM00267 diguanylate cyclase CEQ48_03070 SM00421 helix_turn_helix, Lux Regulon CEQ48_03085 SM00342 helix_turn_helix, arabinose operon control protein CEQ48_03110 SM00344 helix_turn_helix ASNC type CEQ48_03150 SM00421 helix_turn_helix, Lux Regulon CEQ48_03200 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CEQ48_03200 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CEQ48_03220 SM00829 Enoylreductase CEQ48_03295 SM00062 Bacterial periplasmic substrate-binding proteins CEQ48_03305 SM00382 ATPases associated with a variety of cellular activities CEQ48_03320 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CEQ48_03345 SM00382 ATPases associated with a variety of cellular activities CEQ48_03360 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CEQ48_03360 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CEQ48_03395 SM00267 diguanylate cyclase CEQ48_03420 SM00267 diguanylate cyclase CEQ48_03420 SM01079 CEQ48_03420 CEQ48_03430 SM00530 Helix-turn-helix XRE-family like proteins CEQ48_03440 SM00267 diguanylate cyclase CEQ48_03445 SM00347 helix_turn_helix multiple antibiotic resistance protein CEQ48_03450 SM00260 Two component signalling adaptor domain CEQ48_03450 SM00448 cheY-homologous receiver domain CEQ48_03460 SM00421 helix_turn_helix, Lux Regulon CEQ48_03470 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. CEQ48_03485 SM00382 ATPases associated with a variety of cellular activities CEQ48_03515 SM00420 helix_turn_helix, Deoxyribose operon repressor CEQ48_03515 SM01134 CEQ48_03515 CEQ48_03520 SM00091 PAS domain CEQ48_03520 SM00267 diguanylate cyclase CEQ48_03530 SM00342 helix_turn_helix, arabinose operon control protein CEQ48_03545 SM00357 Cold shock protein domain CEQ48_03570 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CEQ48_03570 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CEQ48_03600 SM00382 ATPases associated with a variety of cellular activities CEQ48_03630 SM00729 Elongator protein 3, MiaB family, Radical SAM CEQ48_03645 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CEQ48_03645 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CEQ48_03680 SM00849 Metallo-beta-lactamase superfamily CEQ48_03690 SM01350 CEQ48_03690 CEQ48_03705 SM00481 DNA polymerase alpha chain like domain CEQ48_03745 SM00829 Enoylreductase CEQ48_03775 SM00530 Helix-turn-helix XRE-family like proteins CEQ48_03780 SM00530 Helix-turn-helix XRE-family like proteins CEQ48_04005 SM00357 Cold shock protein domain CEQ48_04010 SM00316 Ribosomal protein S1-like RNA-binding domain CEQ48_04010 SM00357 Cold shock protein domain CEQ48_04010 SM00955 CEQ48_04010 CEQ48_04045 SM01240 CEQ48_04045 CEQ48_04050 SM00487 DEAD-like helicases superfamily CEQ48_04050 SM00490 helicase superfamily c-terminal domain CEQ48_04070 SM00448 cheY-homologous receiver domain CEQ48_04070 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CEQ48_04075 SM00387 Histidine kinase-like ATPases CEQ48_04105 SM00458 Ricin-type beta-trefoil CEQ48_04110 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CEQ48_04110 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CEQ48_04115 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins CEQ48_04145 SM00382 ATPases associated with a variety of cellular activities CEQ48_04150 SM00342 helix_turn_helix, arabinose operon control protein CEQ48_04175 SM00382 ATPases associated with a variety of cellular activities CEQ48_04240 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CEQ48_04250 SM01007 Class II Aldolase and Adducin N-terminal domain CEQ48_04265 SM00420 helix_turn_helix, Deoxyribose operon repressor CEQ48_04265 SM01134 CEQ48_04265 CEQ48_04290 SM00448 cheY-homologous receiver domain CEQ48_04290 SM00862 Transcriptional regulatory protein, C terminal CEQ48_04295 SM00387 Histidine kinase-like ATPases CEQ48_04295 SM00388 His Kinase A (phosphoacceptor) domain CEQ48_04305 SM00422 helix_turn_helix, mercury resistance CEQ48_04340 SM00825 Beta-ketoacyl synthase CEQ48_04345 SM00822 CEQ48_04345 CEQ48_04355 SM00825 Beta-ketoacyl synthase CEQ48_04415 SM00563 Phosphate acyltransferases CEQ48_04440 SM00357 Cold shock protein domain CEQ48_04440 SM00955 CEQ48_04440 CEQ48_04445 SM00487 DEAD-like helicases superfamily CEQ48_04445 SM00490 helicase superfamily c-terminal domain CEQ48_04450 SM00020 Trypsin-like serine protease CEQ48_04495 SM00271 DnaJ molecular chaperone homology domain CEQ48_04505 SM00052 Putative diguanylate phosphodiesterase CEQ48_04505 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CEQ48_04505 SM00267 diguanylate cyclase CEQ48_04520 SM00382 ATPases associated with a variety of cellular activities CEQ48_04540 SM00797 Allophanate hydrolase subunit 2 CEQ48_04545 SM00796 Allophanate hydrolase subunit 1 CEQ48_04575 SM00487 DEAD-like helicases superfamily CEQ48_04575 SM00490 helicase superfamily c-terminal domain CEQ48_04600 SM00382 ATPases associated with a variety of cellular activities CEQ48_04605 SM00327 von Willebrand factor (vWF) type A domain CEQ48_04615 SM00382 ATPases associated with a variety of cellular activities CEQ48_04620 SM00062 Bacterial periplasmic substrate-binding proteins CEQ48_04620 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CEQ48_04735 SM00387 Histidine kinase-like ATPases CEQ48_04735 SM00388 His Kinase A (phosphoacceptor) domain CEQ48_04735 SM00448 cheY-homologous receiver domain CEQ48_04775 SM00382 ATPases associated with a variety of cellular activities CEQ48_04795 SM00989 CEQ48_04795 CEQ48_04800 SM00387 Histidine kinase-like ATPases CEQ48_04830 SM00014 Acid phosphatase homologues CEQ48_04840 SM00851 MGS-like domain CEQ48_04850 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CEQ48_04850 SM00387 Histidine kinase-like ATPases CEQ48_04850 SM00388 His Kinase A (phosphoacceptor) domain CEQ48_04850 SM00448 cheY-homologous receiver domain CEQ48_04870 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CEQ48_04870 SM00387 Histidine kinase-like ATPases CEQ48_04870 SM00388 His Kinase A (phosphoacceptor) domain CEQ48_04875 SM00448 cheY-homologous receiver domain CEQ48_04890 SM00495 Chitin-binding domain type 3 CEQ48_04890 SM00636 CEQ48_04890 CEQ48_04900 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CEQ48_04900 SM00267 diguanylate cyclase CEQ48_04955 SM00822 CEQ48_04955 CEQ48_04975 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CEQ48_04995 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CEQ48_05010 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CEQ48_05010 SM00387 Histidine kinase-like ATPases CEQ48_05015 SM00421 helix_turn_helix, Lux Regulon CEQ48_05015 SM00448 cheY-homologous receiver domain CEQ48_05030 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CEQ48_05030 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CEQ48_05030 SM01358 CEQ48_05030 CEQ48_05060 SM00640 Glycosyl hydrolases family 32 CEQ48_05065 SM00354 helix_turn _helix lactose operon repressor CEQ48_05105 SM00563 Phosphate acyltransferases CEQ48_05130 SM00421 helix_turn_helix, Lux Regulon CEQ48_05130 SM00448 cheY-homologous receiver domain CEQ48_05135 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CEQ48_05135 SM00387 Histidine kinase-like ATPases CEQ48_05145 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CEQ48_05185 SM00342 helix_turn_helix, arabinose operon control protein CEQ48_05230 SM00354 helix_turn _helix lactose operon repressor CEQ48_05245 SM00387 Histidine kinase-like ATPases CEQ48_05245 SM00448 cheY-homologous receiver domain CEQ48_05275 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CEQ48_05275 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CEQ48_05280 SM00052 Putative diguanylate phosphodiesterase CEQ48_05295 SM00867 YceI-like domain CEQ48_05300 SM00116 Domain in cystathionine beta-synthase and other proteins. CEQ48_05335 SM00782 PhnA Zinc-Ribbon CEQ48_05370 SM00062 Bacterial periplasmic substrate-binding proteins CEQ48_05370 SM00267 diguanylate cyclase CEQ48_05390 SM00267 diguanylate cyclase CEQ48_05405 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CEQ48_05405 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CEQ48_05415 SM00387 Histidine kinase-like ATPases CEQ48_05415 SM00388 His Kinase A (phosphoacceptor) domain CEQ48_05420 SM00448 cheY-homologous receiver domain CEQ48_05420 SM00862 Transcriptional regulatory protein, C terminal CEQ48_05450 SM00530 Helix-turn-helix XRE-family like proteins CEQ48_05485 SM00267 diguanylate cyclase CEQ48_05490 SM00448 cheY-homologous receiver domain CEQ48_05490 SM00862 Transcriptional regulatory protein, C terminal CEQ48_05495 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CEQ48_05495 SM00387 Histidine kinase-like ATPases CEQ48_05495 SM00388 His Kinase A (phosphoacceptor) domain CEQ48_05505 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CEQ48_05505 SM00954 Region found in RelA / SpoT proteins CEQ48_05510 SM01409 CEQ48_05510 CEQ48_05515 SM00072 Guanylate kinase homologues. CEQ48_05535 SM01091 Transporter associated domain CEQ48_05540 SM00421 helix_turn_helix, Lux Regulon CEQ48_05540 SM00448 cheY-homologous receiver domain CEQ48_05560 SM00267 diguanylate cyclase CEQ48_05580 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CEQ48_05580 SM00387 Histidine kinase-like ATPases CEQ48_05580 SM00388 His Kinase A (phosphoacceptor) domain CEQ48_05585 SM00448 cheY-homologous receiver domain CEQ48_05585 SM00862 Transcriptional regulatory protein, C terminal CEQ48_05635 SM00919 Malic enzyme, NAD binding domain CEQ48_05635 SM01274 CEQ48_05635 CEQ48_05645 SM00487 DEAD-like helicases superfamily CEQ48_05645 SM00490 helicase superfamily c-terminal domain CEQ48_05650 SM00354 helix_turn _helix lactose operon repressor CEQ48_05665 SM00382 ATPases associated with a variety of cellular activities CEQ48_05665 SM01086 C-terminal, D2-small domain, of ClpB protein CEQ48_05710 SM00883 Chaperonin 10 Kd subunit CEQ48_05730 SM00841 Elongation factor P, C-terminal CEQ48_05730 SM01185 CEQ48_05730 CEQ48_05760 SM00450 Rhodanese Homology Domain CEQ48_05775 SM00971 Serine acetyltransferase, N-terminal CEQ48_05795 SM00859 Semialdehyde dehydrogenase, NAD binding domain CEQ48_05865 SM00965 Secretin and TonB N terminus short domain CEQ48_05945 SM01150 CEQ48_05945 CEQ48_05950 SM00100 Cyclic nucleotide-monophosphate binding domain CEQ48_05950 SM00419 helix_turn_helix, cAMP Regulatory protein CEQ48_05975 SM00382 ATPases associated with a variety of cellular activities CEQ48_06005 SM00788 Adenylosuccinate synthetase CEQ48_06015 SM00671 Sel1-like repeats. CEQ48_06025 SM00316 Ribosomal protein S1-like RNA-binding domain CEQ48_06025 SM00357 Cold shock protein domain CEQ48_06025 SM00955 CEQ48_06025 CEQ48_06030 SM00967 RNA 2'-O ribose methyltransferase substrate binding CEQ48_06035 SM01403 CEQ48_06035 CEQ48_06055 SM01382 CEQ48_06055 CEQ48_06055 SM01383 CEQ48_06055 CEQ48_06070 SM00322 K homology RNA-binding domain CEQ48_06090 SM01374 CEQ48_06090 CEQ48_06095 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CEQ48_06160 SM00363 S4 RNA-binding domain CEQ48_06160 SM01390 CEQ48_06160 CEQ48_06165 SM00662 RNA polymerases D CEQ48_06200 SM00487 DEAD-like helicases superfamily CEQ48_06200 SM00490 helicase superfamily c-terminal domain CEQ48_06250 SM00382 ATPases associated with a variety of cellular activities CEQ48_06325 SM00382 ATPases associated with a variety of cellular activities CEQ48_06340 SM00116 Domain in cystathionine beta-synthase and other proteins. CEQ48_06340 SM00924 MgtE intracellular N domain CEQ48_06370 SM00382 ATPases associated with a variety of cellular activities CEQ48_06390 SM00116 Domain in cystathionine beta-synthase and other proteins. CEQ48_06405 SM00382 ATPases associated with a variety of cellular activities CEQ48_06440 SM00563 Phosphate acyltransferases CEQ48_06465 SM00670 Large family of predicted nucleotide-binding domains CEQ48_06475 SM00487 DEAD-like helicases superfamily CEQ48_06475 SM00490 helicase superfamily c-terminal domain CEQ48_06535 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CEQ48_06585 SM01329 CEQ48_06585 CEQ48_06590 SM00917 LeuA allosteric (dimerisation) domain CEQ48_06600 SM00014 Acid phosphatase homologues CEQ48_06735 SM00358 Double-stranded RNA binding motif CEQ48_06735 SM00535 Ribonuclease III family CEQ48_06770 SM00267 diguanylate cyclase CEQ48_06775 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CEQ48_06775 SM00387 Histidine kinase-like ATPases CEQ48_06775 SM00388 His Kinase A (phosphoacceptor) domain CEQ48_06775 SM00448 cheY-homologous receiver domain CEQ48_06785 SM00954 Region found in RelA / SpoT proteins CEQ48_06800 SM01192 CEQ48_06800 CEQ48_06800 SM01193 CEQ48_06800 CEQ48_06810 SM00382 ATPases associated with a variety of cellular activities CEQ48_06820 SM00287 Bacterial SH3 domain homologues CEQ48_06835 SM00880 CEQ48_06835 CEQ48_06835 SM01118 CEQ48_06835 CEQ48_06840 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CEQ48_06880 SM00387 Histidine kinase-like ATPases CEQ48_06880 SM00433 TopoisomeraseII CEQ48_06885 SM00434 DNA Topoisomerase IV CEQ48_06930 SM00644 CEQ48_06930 CEQ48_06960 SM00345 helix_turn_helix gluconate operon transcriptional repressor CEQ48_06960 SM00895 CEQ48_06960 CEQ48_07040 SM00842 Cell division protein FtsA CEQ48_07045 SM00864 Tubulin/FtsZ family, GTPase domain CEQ48_07045 SM00865 Tubulin/FtsZ family, C-terminal domain CEQ48_07060 SM00957 SecA DEAD-like domain CEQ48_07060 SM00958 SecA preprotein cross-linking domain CEQ48_07080 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CEQ48_07085 SM00851 MGS-like domain CEQ48_07085 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CEQ48_07160 SM00729 Elongator protein 3, MiaB family, Radical SAM CEQ48_07165 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CEQ48_07165 SM00091 PAS domain CEQ48_07165 SM00267 diguanylate cyclase CEQ48_07170 SM00073 Histidine Phosphotransfer domain CEQ48_07170 SM00091 PAS domain CEQ48_07170 SM00387 Histidine kinase-like ATPases CEQ48_07170 SM00388 His Kinase A (phosphoacceptor) domain CEQ48_07170 SM00448 cheY-homologous receiver domain CEQ48_07175 SM00448 cheY-homologous receiver domain CEQ48_07175 SM00862 Transcriptional regulatory protein, C terminal CEQ48_07220 SM00518 AP endonuclease family 2 CEQ48_07225 SM00986 Uracil DNA glycosylase superfamily CEQ48_07225 SM00987 UreE urease accessory protein, C-terminal domain CEQ48_07265 SM01133 CEQ48_07265 CEQ48_07270 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CEQ48_07300 SM00382 ATPases associated with a variety of cellular activities CEQ48_07305 SM00838 Elongation factor G C-terminus CEQ48_07305 SM00889 Elongation factor G, domain IV CEQ48_07325 SM01038 Beta galactosidase small chain CEQ48_07330 SM00354 helix_turn _helix lactose operon repressor CEQ48_07425 SM00925 MltA specific insert domain CEQ48_07460 SM00464 Found in ATP-dependent protease La (LON) CEQ48_07510 SM00900 CEQ48_07510 CEQ48_07550 SM00267 diguanylate cyclase CEQ48_07600 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CEQ48_07655 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CEQ48_07710 SM00935 Outer membrane protein (OmpH-like) CEQ48_07740 SM00481 DNA polymerase alpha chain like domain CEQ48_07750 SM00977 TilS substrate C-terminal domain CEQ48_07760 SM00938 Nitrogen regulatory protein P-II CEQ48_07770 SM00257 Lysin motif CEQ48_07775 SM00849 Metallo-beta-lactamase superfamily CEQ48_07790 SM00479 CEQ48_07790 CEQ48_07830 SM00363 S4 RNA-binding domain CEQ48_07835 SM00463 Small MutS-related domain CEQ48_07860 SM01081 Putative carbohydrate binding domain CEQ48_07930 SM00858 CEQ48_07930 CEQ48_07935 SM00260 Two component signalling adaptor domain CEQ48_07935 SM00448 cheY-homologous receiver domain CEQ48_07940 SM00138 Methyltransferase, chemotaxis proteins CEQ48_07985 SM00047 Lysozyme subfamily 2 CEQ48_08100 SM01400 CEQ48_08100 CEQ48_08120 SM00937 CEQ48_08120 CEQ48_08180 SM00028 Tetratricopeptide repeats CEQ48_08195 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CEQ48_08195 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CEQ48_08210 SM01130 CEQ48_08210 CEQ48_08295 SM00382 ATPases associated with a variety of cellular activities CEQ48_08300 SM00091 PAS domain CEQ48_08300 SM00387 Histidine kinase-like ATPases CEQ48_08300 SM00388 His Kinase A (phosphoacceptor) domain CEQ48_08305 SM00382 ATPases associated with a variety of cellular activities CEQ48_08305 SM00448 cheY-homologous receiver domain CEQ48_08330 SM00382 ATPases associated with a variety of cellular activities CEQ48_08390 SM00463 Small MutS-related domain CEQ48_08430 SM00825 Beta-ketoacyl synthase CEQ48_08440 SM00859 Semialdehyde dehydrogenase, NAD binding domain CEQ48_08530 SM00861 Transketolase, pyrimidine binding domain CEQ48_08545 SM00881 CoA binding domain CEQ48_08555 SM00382 ATPases associated with a variety of cellular activities CEQ48_08565 SM00342 helix_turn_helix, arabinose operon control protein CEQ48_08570 SM00899 CEQ48_08570 CEQ48_08590 SM00836 DALR anticodon binding domain CEQ48_08590 SM01016 Arginyl tRNA synthetase N terminal dom CEQ48_08605 SM00855 Phosphoglycerate mutase family CEQ48_08615 SM00382 ATPases associated with a variety of cellular activities CEQ48_08615 SM00962 SRP54-type protein, GTPase domain CEQ48_08630 SM00448 cheY-homologous receiver domain CEQ48_08640 SM00073 Histidine Phosphotransfer domain CEQ48_08640 SM00260 Two component signalling adaptor domain CEQ48_08640 SM00387 Histidine kinase-like ATPases CEQ48_08640 SM01231 CEQ48_08640 CEQ48_08645 SM00448 cheY-homologous receiver domain CEQ48_08655 SM00260 Two component signalling adaptor domain CEQ48_08660 SM00260 Two component signalling adaptor domain CEQ48_08670 SM00382 ATPases associated with a variety of cellular activities CEQ48_08740 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CEQ48_08740 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CEQ48_08740 SM00493 CEQ48_08740 CEQ48_08775 SM00073 Histidine Phosphotransfer domain CEQ48_08785 SM00859 Semialdehyde dehydrogenase, NAD binding domain CEQ48_08815 SM00316 Ribosomal protein S1-like RNA-binding domain CEQ48_08830 SM00363 S4 RNA-binding domain CEQ48_08860 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CEQ48_08865 SM00822 CEQ48_08865 CEQ48_08875 SM00825 Beta-ketoacyl synthase CEQ48_08940 SM00260 Two component signalling adaptor domain CEQ48_08940 SM00448 cheY-homologous receiver domain CEQ48_08990 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CEQ48_09010 SM00870 CEQ48_09010 CEQ48_09035 SM00487 DEAD-like helicases superfamily CEQ48_09035 SM00491 CEQ48_09035 CEQ48_09065 SM00474 3'-5' exonuclease CEQ48_09080 SM01144 CEQ48_09080 CEQ48_09085 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CEQ48_09090 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CEQ48_09120 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CEQ48_09135 SM00530 Helix-turn-helix XRE-family like proteins CEQ48_09140 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CEQ48_09140 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CEQ48_09145 SM00563 Phosphate acyltransferases CEQ48_09155 SM00978 CEQ48_09155 CEQ48_09210 SM00495 Chitin-binding domain type 3 CEQ48_09210 SM00636 CEQ48_09210 CEQ48_09245 SM01006 Siderophore biosynthesis protein domain CEQ48_09265 SM00382 ATPases associated with a variety of cellular activities CEQ48_09300 SM00014 Acid phosphatase homologues CEQ48_09310 SM00563 Phosphate acyltransferases CEQ48_09360 SM00382 ATPases associated with a variety of cellular activities CEQ48_09360 SM00448 cheY-homologous receiver domain CEQ48_09365 SM00387 Histidine kinase-like ATPases CEQ48_09365 SM00388 His Kinase A (phosphoacceptor) domain CEQ48_09385 SM00382 ATPases associated with a variety of cellular activities CEQ48_09385 SM00994 ClpX C4-type zinc finger CEQ48_09385 SM01086 C-terminal, D2-small domain, of ClpB protein CEQ48_09390 SM00382 ATPases associated with a variety of cellular activities CEQ48_09390 SM00464 Found in ATP-dependent protease La (LON) CEQ48_09395 SM00411 bacterial (prokaryotic) histone like domain CEQ48_09405 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CEQ48_09415 SM00316 Ribosomal protein S1-like RNA-binding domain CEQ48_09420 SM00411 bacterial (prokaryotic) histone like domain CEQ48_09430 SM00028 Tetratricopeptide repeats CEQ48_09435 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CEQ48_09455 SM00382 ATPases associated with a variety of cellular activities CEQ48_09460 SM00382 ATPases associated with a variety of cellular activities CEQ48_09510 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CEQ48_09510 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CEQ48_09515 SM00344 helix_turn_helix ASNC type CEQ48_09520 SM00843 CEQ48_09520 CEQ48_09535 SM00345 helix_turn_helix gluconate operon transcriptional repressor CEQ48_09545 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CEQ48_09545 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CEQ48_09600 SM00487 DEAD-like helicases superfamily CEQ48_09600 SM00490 helicase superfamily c-terminal domain CEQ48_09600 SM00982 CEQ48_09600 CEQ48_09600 SM01058 CarD-like/TRCF domain CEQ48_09615 SM00382 ATPases associated with a variety of cellular activities CEQ48_09630 SM00849 Metallo-beta-lactamase superfamily CEQ48_09635 SM00382 ATPases associated with a variety of cellular activities CEQ48_09665 SM00763 PrkA AAA domain CEQ48_09685 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CEQ48_09685 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CEQ48_09705 SM00382 ATPases associated with a variety of cellular activities CEQ48_09710 SM00062 Bacterial periplasmic substrate-binding proteins CEQ48_09710 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CEQ48_09750 SM00491 CEQ48_09750 CEQ48_09765 SM00052 Putative diguanylate phosphodiesterase CEQ48_09780 SM00840 CEQ48_09780 CEQ48_09790 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CEQ48_09795 SM00382 ATPases associated with a variety of cellular activities CEQ48_09865 SM00387 Histidine kinase-like ATPases CEQ48_09865 SM00388 His Kinase A (phosphoacceptor) domain CEQ48_09865 SM00448 cheY-homologous receiver domain CEQ48_09880 SM00382 ATPases associated with a variety of cellular activities CEQ48_09935 SM01130 CEQ48_09935 CEQ48_10000 SM01276 CEQ48_10000 CEQ48_10035 SM01321 CEQ48_10035 CEQ48_10040 SM00246 Wiskott Aldrich syndrome homology region 2 CEQ48_10160 SM00862 Transcriptional regulatory protein, C terminal CEQ48_10195 SM00382 ATPases associated with a variety of cellular activities CEQ48_10225 SM00862 Transcriptional regulatory protein, C terminal CEQ48_10265 SM00862 Transcriptional regulatory protein, C terminal CEQ48_10270 SM00564 beta-propeller repeat CEQ48_10295 SM00052 Putative diguanylate phosphodiesterase CEQ48_10375 SM00316 Ribosomal protein S1-like RNA-binding domain CEQ48_10405 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CEQ48_10405 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CEQ48_10405 SM00493 CEQ48_10405 CEQ48_10445 SM00354 helix_turn _helix lactose operon repressor CEQ48_10460 SM00448 cheY-homologous receiver domain CEQ48_10460 SM00862 Transcriptional regulatory protein, C terminal CEQ48_10490 SM00344 helix_turn_helix ASNC type CEQ48_10500 SM00729 Elongator protein 3, MiaB family, Radical SAM CEQ48_10505 SM00052 Putative diguanylate phosphodiesterase CEQ48_10505 SM00091 PAS domain CEQ48_10625 SM01131 CEQ48_10625 CEQ48_10640 SM00382 ATPases associated with a variety of cellular activities CEQ48_10645 SM00382 ATPases associated with a variety of cellular activities CEQ48_10665 SM00382 ATPases associated with a variety of cellular activities CEQ48_10700 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CEQ48_10715 SM00155 Phospholipase D. Active site motifs. CEQ48_10745 SM00382 ATPases associated with a variety of cellular activities CEQ48_10780 SM00382 ATPases associated with a variety of cellular activities CEQ48_10800 SM00116 Domain in cystathionine beta-synthase and other proteins. CEQ48_10805 SM00062 Bacterial periplasmic substrate-binding proteins CEQ48_10805 SM00387 Histidine kinase-like ATPases CEQ48_10805 SM00388 His Kinase A (phosphoacceptor) domain CEQ48_10805 SM00448 cheY-homologous receiver domain CEQ48_10810 SM00052 Putative diguanylate phosphodiesterase CEQ48_10810 SM00421 helix_turn_helix, Lux Regulon CEQ48_10810 SM00448 cheY-homologous receiver domain CEQ48_10850 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CEQ48_10850 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CEQ48_10875 SM00387 Histidine kinase-like ATPases CEQ48_10880 SM00448 cheY-homologous receiver domain CEQ48_10880 SM00862 Transcriptional regulatory protein, C terminal CEQ48_10890 SM00487 DEAD-like helicases superfamily CEQ48_10890 SM00490 helicase superfamily c-terminal domain CEQ48_10895 SM00363 S4 RNA-binding domain CEQ48_10920 SM00382 ATPases associated with a variety of cellular activities CEQ48_11020 SM00028 Tetratricopeptide repeats CEQ48_11020 SM00386 HAT (Half-A-TPR) repeats CEQ48_11060 SM00387 Histidine kinase-like ATPases CEQ48_11065 SM00448 cheY-homologous receiver domain CEQ48_11070 SM00062 Bacterial periplasmic substrate-binding proteins CEQ48_11075 SM00260 Two component signalling adaptor domain CEQ48_11075 SM00448 cheY-homologous receiver domain CEQ48_11090 SM00267 diguanylate cyclase CEQ48_11125 SM00267 diguanylate cyclase CEQ48_11130 SM00052 Putative diguanylate phosphodiesterase CEQ48_11135 SM01060 CEQ48_11135 CEQ48_11140 SM00248 ankyrin repeats CEQ48_11145 SM01022 CEQ48_11145 CEQ48_11165 SM00342 helix_turn_helix, arabinose operon control protein CEQ48_11195 SM00849 Metallo-beta-lactamase superfamily CEQ48_11245 SM00420 helix_turn_helix, Deoxyribose operon repressor CEQ48_11245 SM01134 CEQ48_11245 CEQ48_11250 SM00382 ATPases associated with a variety of cellular activities CEQ48_11350 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CEQ48_11375 SM00852 Probable molybdopterin binding domain CEQ48_11385 SM00382 ATPases associated with a variety of cellular activities CEQ48_11400 SM00382 ATPases associated with a variety of cellular activities CEQ48_11400 SM00448 cheY-homologous receiver domain CEQ48_11405 SM00387 Histidine kinase-like ATPases CEQ48_11405 SM00388 His Kinase A (phosphoacceptor) domain CEQ48_11410 SM00382 ATPases associated with a variety of cellular activities CEQ48_11505 SM00316 Ribosomal protein S1-like RNA-binding domain CEQ48_11525 SM00382 ATPases associated with a variety of cellular activities CEQ48_11535 SM00945 ProQ/FINO family CEQ48_11540 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CEQ48_11540 SM00245 tail specific protease CEQ48_11580 SM00981 CEQ48_11580 CEQ48_11590 SM00382 ATPases associated with a variety of cellular activities CEQ48_11630 SM00387 Histidine kinase-like ATPases CEQ48_11630 SM00388 His Kinase A (phosphoacceptor) domain CEQ48_11630 SM00448 cheY-homologous receiver domain CEQ48_11635 SM00897 FIST N domain CEQ48_11635 SM01204 CEQ48_11635 CEQ48_11685 SM00100 Cyclic nucleotide-monophosphate binding domain CEQ48_11685 SM00419 helix_turn_helix, cAMP Regulatory protein CEQ48_11715 SM00382 ATPases associated with a variety of cellular activities CEQ48_11790 SM00487 DEAD-like helicases superfamily CEQ48_11790 SM00490 helicase superfamily c-terminal domain CEQ48_11795 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CEQ48_11795 SM00091 PAS domain CEQ48_11795 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CEQ48_11800 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CEQ48_11800 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CEQ48_11845 SM00382 ATPases associated with a variety of cellular activities CEQ48_11845 SM00487 DEAD-like helicases superfamily CEQ48_11845 SM00490 helicase superfamily c-terminal domain CEQ48_11845 SM00847 Helicase associated domain (HA2) Add an annotation CEQ48_11860 SM00479 CEQ48_11860 CEQ48_11865 SM00267 diguanylate cyclase CEQ48_11865 SM01079 CEQ48_11865 CEQ48_11890 SM00267 diguanylate cyclase CEQ48_11900 SM00267 diguanylate cyclase CEQ48_11915 SM00028 Tetratricopeptide repeats CEQ48_11915 SM00267 diguanylate cyclase CEQ48_11940 SM00062 Bacterial periplasmic substrate-binding proteins CEQ48_11955 SM00382 ATPases associated with a variety of cellular activities CEQ48_11975 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CEQ48_11980 SM00267 diguanylate cyclase CEQ48_11995 SM00073 Histidine Phosphotransfer domain CEQ48_11995 SM00091 PAS domain CEQ48_11995 SM00387 Histidine kinase-like ATPases CEQ48_11995 SM00388 His Kinase A (phosphoacceptor) domain CEQ48_11995 SM00448 cheY-homologous receiver domain CEQ48_12000 SM00448 cheY-homologous receiver domain CEQ48_12000 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CEQ48_12065 SM00345 helix_turn_helix gluconate operon transcriptional repressor CEQ48_12065 SM00895 CEQ48_12065 CEQ48_12070 SM00062 Bacterial periplasmic substrate-binding proteins CEQ48_12070 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CEQ48_12105 SM00382 ATPases associated with a variety of cellular activities CEQ48_12135 SM00448 cheY-homologous receiver domain CEQ48_12140 SM00387 Histidine kinase-like ATPases CEQ48_12150 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CEQ48_12150 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CEQ48_12155 SM01005 Alanine racemase, C-terminal domain CEQ48_12185 SM00091 PAS domain CEQ48_12185 SM00382 ATPases associated with a variety of cellular activities CEQ48_12235 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CEQ48_12235 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CEQ48_12250 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CEQ48_12250 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CEQ48_12270 SM00100 Cyclic nucleotide-monophosphate binding domain CEQ48_12270 SM00116 Domain in cystathionine beta-synthase and other proteins. CEQ48_12275 SM00479 CEQ48_12275 CEQ48_12280 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CEQ48_12280 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CEQ48_12295 SM00354 helix_turn _helix lactose operon repressor CEQ48_12325 SM00495 Chitin-binding domain type 3 CEQ48_12335 SM00347 helix_turn_helix multiple antibiotic resistance protein CEQ48_12340 SM00421 helix_turn_helix, Lux Regulon CEQ48_12340 SM00448 cheY-homologous receiver domain CEQ48_12345 SM00387 Histidine kinase-like ATPases CEQ48_12345 SM01049 CEQ48_12345 CEQ48_12380 SM00849 Metallo-beta-lactamase superfamily CEQ48_12430 SM00342 helix_turn_helix, arabinose operon control protein CEQ48_12435 SM00450 Rhodanese Homology Domain CEQ48_12440 SM00357 Cold shock protein domain CEQ48_12490 SM00434 DNA Topoisomerase IV CEQ48_12520 SM00852 Probable molybdopterin binding domain CEQ48_12535 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CEQ48_12535 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CEQ48_12535 SM01049 CEQ48_12535 CEQ48_12555 SM00382 ATPases associated with a variety of cellular activities CEQ48_12570 SM00855 Phosphoglycerate mutase family CEQ48_12650 SM00411 bacterial (prokaryotic) histone like domain CEQ48_12655 SM00873 B3/4 domain CEQ48_12655 SM00874 tRNA synthetase B5 domain CEQ48_12655 SM00896 Ferredoxin-fold anticodon binding domain CEQ48_12670 SM00267 diguanylate cyclase CEQ48_12700 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CEQ48_12700 SM00465 GIY-YIG type nucleases (URI domain) CEQ48_12705 SM00421 helix_turn_helix, Lux Regulon CEQ48_12705 SM00448 cheY-homologous receiver domain CEQ48_12710 SM00486 DNA polymerase type-B family CEQ48_12715 SM00052 Putative diguanylate phosphodiesterase CEQ48_12725 SM00841 Elongation factor P, C-terminal CEQ48_12725 SM01185 CEQ48_12725 CEQ48_12740 SM00345 helix_turn_helix gluconate operon transcriptional repressor CEQ48_12740 SM00866 CEQ48_12740 CEQ48_12770 SM00020 Trypsin-like serine protease CEQ48_12805 SM00271 DnaJ molecular chaperone homology domain CEQ48_12805 SM00671 Sel1-like repeats. CEQ48_12830 SM00919 Malic enzyme, NAD binding domain CEQ48_12830 SM01274 CEQ48_12830 CEQ48_12845 SM00267 diguanylate cyclase CEQ48_12865 SM00382 ATPases associated with a variety of cellular activities CEQ48_12870 SM00382 ATPases associated with a variety of cellular activities CEQ48_12875 SM00363 S4 RNA-binding domain CEQ48_12885 SM00481 DNA polymerase alpha chain like domain CEQ48_12980 SM00387 Histidine kinase-like ATPases CEQ48_12985 SM00448 cheY-homologous receiver domain CEQ48_13040 SM00382 ATPases associated with a variety of cellular activities CEQ48_13040 SM01086 C-terminal, D2-small domain, of ClpB protein CEQ48_13050 SM00357 Cold shock protein domain CEQ48_13110 SM00528 Domain in histone-like proteins of HNS family CEQ48_13200 SM00729 Elongator protein 3, MiaB family, Radical SAM CEQ48_13200 SM00876 Biotin and Thiamin Synthesis associated domain CEQ48_13215 SM00382 ATPases associated with a variety of cellular activities CEQ48_13235 SM00267 diguanylate cyclase CEQ48_13240 SM00382 ATPases associated with a variety of cellular activities CEQ48_13280 SM00382 ATPases associated with a variety of cellular activities CEQ48_13285 SM00382 ATPases associated with a variety of cellular activities CEQ48_13310 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CEQ48_13310 SM00387 Histidine kinase-like ATPases CEQ48_13315 SM00448 cheY-homologous receiver domain CEQ48_13320 SM00052 Putative diguanylate phosphodiesterase CEQ48_13320 SM00448 cheY-homologous receiver domain CEQ48_13325 SM00387 Histidine kinase-like ATPases CEQ48_13330 SM00387 Histidine kinase-like ATPases CEQ48_13330 SM00388 His Kinase A (phosphoacceptor) domain CEQ48_13340 SM00448 cheY-homologous receiver domain CEQ48_13420 SM00420 helix_turn_helix, Deoxyribose operon repressor CEQ48_13420 SM01134 CEQ48_13420 CEQ48_13425 SM00420 helix_turn_helix, Deoxyribose operon repressor CEQ48_13425 SM01134 CEQ48_13425 CEQ48_13440 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CEQ48_13445 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CEQ48_13540 SM00487 DEAD-like helicases superfamily CEQ48_13550 SM00530 Helix-turn-helix XRE-family like proteins CEQ48_13575 SM00062 Bacterial periplasmic substrate-binding proteins CEQ48_13575 SM00267 diguanylate cyclase CEQ48_13600 SM00344 helix_turn_helix ASNC type CEQ48_13630 SM00493 CEQ48_13630 CEQ48_13640 SM00382 ATPases associated with a variety of cellular activities CEQ48_13660 SM00448 cheY-homologous receiver domain CEQ48_13705 SM00226 Low molecular weight phosphatase family CEQ48_13770 SM00267 diguanylate cyclase CEQ48_13790 SM00852 Probable molybdopterin binding domain CEQ48_13795 SM00729 Elongator protein 3, MiaB family, Radical SAM CEQ48_13810 SM00382 ATPases associated with a variety of cellular activities CEQ48_13810 SM00448 cheY-homologous receiver domain CEQ48_13820 SM00487 DEAD-like helicases superfamily CEQ48_13820 SM00490 helicase superfamily c-terminal domain CEQ48_13860 SM00478 endonuclease III CEQ48_13860 SM00525 CEQ48_13860 CEQ48_13955 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CEQ48_13955 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CEQ48_13975 SM00387 Histidine kinase-like ATPases CEQ48_13980 SM00862 Transcriptional regulatory protein, C terminal CEQ48_14020 SM00244 prohibitin homologues CEQ48_14030 SM00422 helix_turn_helix, mercury resistance CEQ48_14045 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CEQ48_14045 SM00292 breast cancer carboxy-terminal domain CEQ48_14045 SM00532 Ligase N family CEQ48_14050 SM00771 ZipA, C-terminal domain (FtsZ-binding) CEQ48_14090 SM00729 Elongator protein 3, MiaB family, Radical SAM CEQ48_14105 SM00116 Domain in cystathionine beta-synthase and other proteins. CEQ48_14105 SM01091 Transporter associated domain CEQ48_14160 SM00936 Penicillin-binding protein 5, C-terminal domain CEQ48_14175 SM00729 Elongator protein 3, MiaB family, Radical SAM CEQ48_14295 SM00984 UDP binding domain CEQ48_14305 SM00226 Low molecular weight phosphatase family CEQ48_14350 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CEQ48_14350 SM00387 Histidine kinase-like ATPases CEQ48_14350 SM00388 His Kinase A (phosphoacceptor) domain CEQ48_14355 SM00448 cheY-homologous receiver domain CEQ48_14355 SM00862 Transcriptional regulatory protein, C terminal CEQ48_14360 SM00642 Alpha-amylase domain CEQ48_14370 SM00354 helix_turn _helix lactose operon repressor CEQ48_14380 SM00382 ATPases associated with a variety of cellular activities CEQ48_14380 SM00930 CEQ48_14380 CEQ48_14410 SM00028 Tetratricopeptide repeats CEQ48_14415 SM00267 diguanylate cyclase CEQ48_14425 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CEQ48_14425 SM00475 5'-3' exonuclease CEQ48_14445 SM00981 CEQ48_14445 CEQ48_14470 SM00861 Transketolase, pyrimidine binding domain CEQ48_14550 SM01211 CEQ48_14550 CEQ48_14560 SM00062 Bacterial periplasmic substrate-binding proteins CEQ48_14575 SM00829 Enoylreductase CEQ48_14620 SM00271 DnaJ molecular chaperone homology domain CEQ48_14705 SM00530 Helix-turn-helix XRE-family like proteins CEQ48_14715 SM00487 DEAD-like helicases superfamily CEQ48_14715 SM00490 helicase superfamily c-terminal domain CEQ48_14770 SM00764 Citrate lyase ligase C-terminal domain CEQ48_14795 SM00091 PAS domain CEQ48_14795 SM00387 Histidine kinase-like ATPases CEQ48_14800 SM00448 cheY-homologous receiver domain CEQ48_14810 SM00052 Putative diguanylate phosphodiesterase CEQ48_14835 SM00849 Metallo-beta-lactamase superfamily CEQ48_14850 SM00495 Chitin-binding domain type 3 CEQ48_14865 SM00382 ATPases associated with a variety of cellular activities CEQ48_14875 SM00833 Cobalamin synthesis protein cobW C-terminal domain CEQ48_14925 SM00345 helix_turn_helix gluconate operon transcriptional repressor CEQ48_14925 SM00866 CEQ48_14925 CEQ48_14955 SM00422 helix_turn_helix, mercury resistance CEQ48_15035 SM00116 Domain in cystathionine beta-synthase and other proteins. CEQ48_15035 SM01240 CEQ48_15035 CEQ48_15055 SM00382 ATPases associated with a variety of cellular activities CEQ48_15060 SM00564 beta-propeller repeat CEQ48_15080 SM00530 Helix-turn-helix XRE-family like proteins CEQ48_15090 SM00562 CEQ48_15090 CEQ48_15115 SM00271 DnaJ molecular chaperone homology domain CEQ48_15160 SM01323 CEQ48_15160 CEQ48_15180 SM00116 Domain in cystathionine beta-synthase and other proteins. CEQ48_15220 SM00382 ATPases associated with a variety of cellular activities CEQ48_15250 SM00091 PAS domain CEQ48_15250 SM00387 Histidine kinase-like ATPases CEQ48_15250 SM00388 His Kinase A (phosphoacceptor) domain CEQ48_15255 SM00448 cheY-homologous receiver domain CEQ48_15255 SM00862 Transcriptional regulatory protein, C terminal CEQ48_15325 SM00382 ATPases associated with a variety of cellular activities CEQ48_15325 SM01086 C-terminal, D2-small domain, of ClpB protein CEQ48_15335 SM00363 S4 RNA-binding domain CEQ48_15350 SM00830 Chorismate mutase type II CEQ48_15360 SM00052 Putative diguanylate phosphodiesterase CEQ48_15360 SM00267 diguanylate cyclase CEQ48_15380 SM00382 ATPases associated with a variety of cellular activities CEQ48_15390 SM00830 Chorismate mutase type II CEQ48_15405 SM00448 cheY-homologous receiver domain CEQ48_15405 SM00850 LytTr DNA-binding domain CEQ48_15460 SM00904 Riboflavin kinase CEQ48_15475 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CEQ48_15505 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CEQ48_15515 SM00927 DNA mismatch repair enzyme MutH CEQ48_15530 SM00382 ATPases associated with a variety of cellular activities CEQ48_15555 SM00487 DEAD-like helicases superfamily CEQ48_15555 SM00490 helicase superfamily c-terminal domain CEQ48_15565 SM00052 Putative diguanylate phosphodiesterase CEQ48_15565 SM00267 diguanylate cyclase CEQ48_15590 SM00052 Putative diguanylate phosphodiesterase CEQ48_15590 SM00091 PAS domain CEQ48_15590 SM00267 diguanylate cyclase CEQ48_15610 SM00347 helix_turn_helix multiple antibiotic resistance protein CEQ48_15615 SM00028 Tetratricopeptide repeats CEQ48_15620 SM00316 Ribosomal protein S1-like RNA-binding domain CEQ48_15620 SM00322 K homology RNA-binding domain CEQ48_15625 SM01387 CEQ48_15625 CEQ48_15645 SM00316 Ribosomal protein S1-like RNA-binding domain CEQ48_15645 SM00322 K homology RNA-binding domain CEQ48_15685 SM00382 ATPases associated with a variety of cellular activities CEQ48_15695 SM01103 CEQ48_15695 CEQ48_15715 SM00363 S4 RNA-binding domain CEQ48_15755 SM00091 PAS domain CEQ48_15755 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CEQ48_15755 SM00387 Histidine kinase-like ATPases CEQ48_15755 SM00388 His Kinase A (phosphoacceptor) domain CEQ48_15755 SM00448 cheY-homologous receiver domain CEQ48_15775 SM00382 ATPases associated with a variety of cellular activities CEQ48_15780 SM00382 ATPases associated with a variety of cellular activities CEQ48_15800 SM01068 Putative carbohydrate binding domain CEQ48_15810 SM00382 ATPases associated with a variety of cellular activities CEQ48_15830 SM00938 Nitrogen regulatory protein P-II CEQ48_15855 SM00487 DEAD-like helicases superfamily CEQ48_15855 SM00490 helicase superfamily c-terminal domain CEQ48_15855 SM00847 Helicase associated domain (HA2) Add an annotation CEQ48_15905 SM00382 ATPases associated with a variety of cellular activities CEQ48_15915 SM00947 Carbonic anhydrase CEQ48_15955 SM00749 bacterial OsmY and nodulation domain CEQ48_16005 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CEQ48_16035 SM00382 ATPases associated with a variety of cellular activities CEQ48_16035 SM00962 SRP54-type protein, GTPase domain CEQ48_16035 SM00963 SRP54-type protein, helical bundle domain CEQ48_16045 SM01091 Transporter associated domain CEQ48_16070 SM00829 Enoylreductase CEQ48_16145 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CEQ48_16155 SM00382 ATPases associated with a variety of cellular activities CEQ48_16165 SM00382 ATPases associated with a variety of cellular activities CEQ48_16190 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CEQ48_16190 SM00534 ATPase domain of DNA mismatch repair MUTS family CEQ48_16200 SM00257 Lysin motif CEQ48_16255 SM01207 CEQ48_16255 CEQ48_16280 SM00400 zinc finger CEQ48_16280 SM00493 CEQ48_16280 CEQ48_16280 SM00766 DNA primase DnaG DnaB-binding CEQ48_16295 SM00563 Phosphate acyltransferases CEQ48_16365 SM00382 ATPases associated with a variety of cellular activities CEQ48_16385 SM00420 helix_turn_helix, Deoxyribose operon repressor CEQ48_16385 SM01134 CEQ48_16385 CEQ48_16430 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CEQ48_16445 SM00861 Transketolase, pyrimidine binding domain CEQ48_16455 SM00731 SprT homologues. CEQ48_16480 SM00732 Likely ribonuclease with RNase H fold. CEQ48_16490 SM00421 helix_turn_helix, Lux Regulon CEQ48_16525 SM01152 CEQ48_16525 CEQ48_16540 SM00729 Elongator protein 3, MiaB family, Radical SAM CEQ48_16555 SM00478 endonuclease III CEQ48_16555 SM00525 CEQ48_16555 CEQ48_16590 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CEQ48_16590 SM01049 CEQ48_16590 CEQ48_16625 SM00271 DnaJ molecular chaperone homology domain CEQ48_16645 SM00650 Ribosomal RNA adenine dimethylases CEQ48_16785 SM00316 Ribosomal protein S1-like RNA-binding domain CEQ48_16810 SM00560 LamG-like jellyroll fold domain CEQ48_16855 SM00382 ATPases associated with a variety of cellular activities CEQ48_16860 SM00028 Tetratricopeptide repeats CEQ48_16870 SM00965 Secretin and TonB N terminus short domain CEQ48_16890 SM00052 Putative diguanylate phosphodiesterase CEQ48_16890 SM00267 diguanylate cyclase CEQ48_16970 SM00421 helix_turn_helix, Lux Regulon CEQ48_17000 SM01018 B12 binding domain CEQ48_17135 SM01005 Alanine racemase, C-terminal domain CEQ48_17140 SM00382 ATPases associated with a variety of cellular activities CEQ48_17185 SM00838 Elongation factor G C-terminus CEQ48_17185 SM00889 Elongation factor G, domain IV CEQ48_17225 SM00320 WD40 repeats CEQ48_17240 SM00244 prohibitin homologues CEQ48_17245 SM00244 prohibitin homologues CEQ48_17265 SM00853 MutL C terminal dimerisation domain CEQ48_17265 SM01340 CEQ48_17265 CEQ48_17270 SM00257 Lysin motif CEQ48_17270 SM00646 CEQ48_17270 CEQ48_17330 SM00479 CEQ48_17330 CEQ48_17390 SM00663 RNA polymerase I subunit A N-terminus CEQ48_17415 SM00649 Ribosomal protein L11/L12 CEQ48_17420 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CEQ48_17420 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CEQ48_17475 SM00155 Phospholipase D. Active site motifs. CEQ48_17530 SM00357 Cold shock protein domain CEQ48_17530 SM00382 ATPases associated with a variety of cellular activities CEQ48_17530 SM00959 Rho termination factor, N-terminal domain CEQ48_17540 SM00487 DEAD-like helicases superfamily CEQ48_17540 SM00490 helicase superfamily c-terminal domain CEQ48_17550 SM00387 Histidine kinase-like ATPases CEQ48_17550 SM00388 His Kinase A (phosphoacceptor) domain CEQ48_17550 SM00448 cheY-homologous receiver domain CEQ48_17565 SM00116 Domain in cystathionine beta-synthase and other proteins. CEQ48_17570 SM00479 CEQ48_17570 CEQ48_17590 SM00878 Biotin carboxylase C-terminal domain CEQ48_17610 SM00354 helix_turn _helix lactose operon repressor CEQ48_17645 SM00862 Transcriptional regulatory protein, C terminal CEQ48_17650 SM00422 helix_turn_helix, mercury resistance CEQ48_17660 SM00798 AICARFT/IMPCHase bienzyme CEQ48_17660 SM00851 MGS-like domain CEQ48_17665 SM01209 CEQ48_17665 CEQ48_17665 SM01210 CEQ48_17665 CEQ48_17675 SM00411 bacterial (prokaryotic) histone like domain CEQ48_17700 SM00986 Uracil DNA glycosylase superfamily CEQ48_17700 SM00987 UreE urease accessory protein, C-terminal domain CEQ48_17710 SM00849 Metallo-beta-lactamase superfamily CEQ48_17710 SM01027 Beta-Casp domain CEQ48_17780 SM00226 Low molecular weight phosphatase family CEQ48_17880 SM00382 ATPases associated with a variety of cellular activities CEQ48_18010 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CEQ48_18010 SM01232 CEQ48_18010 CEQ48_18035 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CEQ48_18035 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CEQ48_18035 SM01049 CEQ48_18035 CEQ48_18160 SM00257 Lysin motif CEQ48_18265 SM00341 Helicase and RNase D C-terminal CEQ48_18265 SM00487 DEAD-like helicases superfamily CEQ48_18265 SM00490 helicase superfamily c-terminal domain CEQ48_18265 SM00956 CEQ48_18265 CEQ48_18280 SM00342 helix_turn_helix, arabinose operon control protein CEQ48_18330 SM00382 ATPases associated with a variety of cellular activities CEQ48_18405 SM00382 ATPases associated with a variety of cellular activities CEQ48_18595 SM00382 ATPases associated with a variety of cellular activities CEQ48_18635 SM00470 ParB-like nuclease domain CEQ48_18650 SM01228 CEQ48_18650 CEQ48_18675 SM01234 CEQ48_18675 CEQ48_18690 SM00382 ATPases associated with a variety of cellular activities CEQ48_18700 SM00062 Bacterial periplasmic substrate-binding proteins CEQ48_18705 SM00382 ATPases associated with a variety of cellular activities CEQ48_18705 SM00760 Bacterial dnaA protein helix-turn-helix domain CEQ48_18710 SM00480 DNA polymerase III beta subunit CEQ48_18720 SM00387 Histidine kinase-like ATPases CEQ48_18720 SM00433 TopoisomeraseII CEQ48_18775 SM00829 Enoylreductase CEQ48_18810 SM00382 ATPases associated with a variety of cellular activities CEQ48_18815 SM00563 Phosphate acyltransferases CEQ48_18885 SM00257 Lysin motif CEQ48_18910 SM01001 AIR carboxylase CEQ48_19010 SM00876 Biotin and Thiamin Synthesis associated domain CEQ48_19035 SM00344 helix_turn_helix ASNC type CEQ48_19040 SM00052 Putative diguanylate phosphodiesterase CEQ48_19040 SM00091 PAS domain CEQ48_19040 SM00267 diguanylate cyclase CEQ48_19135 SM00091 PAS domain CEQ48_19135 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CEQ48_19205 SM00563 Phosphate acyltransferases CEQ48_19235 SM00450 Rhodanese Homology Domain CEQ48_19250 SM01004 Delta-aminolevulinic acid dehydratase CEQ48_19265 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CEQ48_19265 SM00474 3'-5' exonuclease CEQ48_19265 SM00475 5'-3' exonuclease CEQ48_19265 SM00482 DNA polymerase A domain CEQ48_19295 SM00729 Elongator protein 3, MiaB family, Radical SAM CEQ48_19330 SM01219 CEQ48_19330 CEQ48_19365 SM00052 Putative diguanylate phosphodiesterase CEQ48_19365 SM00267 diguanylate cyclase CEQ48_19365 SM00897 FIST N domain CEQ48_19365 SM01204 CEQ48_19365 CEQ48_19370 SM01144 CEQ48_19370 CEQ48_19445 SM00382 ATPases associated with a variety of cellular activities CEQ48_19445 SM00962 SRP54-type protein, GTPase domain CEQ48_19445 SM00963 SRP54-type protein, helical bundle domain CEQ48_19450 SM00382 ATPases associated with a variety of cellular activities CEQ48_19500 SM00360 RNA recognition motif CEQ48_19580 SM00052 Putative diguanylate phosphodiesterase CEQ48_19580 SM00267 diguanylate cyclase CEQ48_19585 SM00382 ATPases associated with a variety of cellular activities CEQ48_19585 SM00448 cheY-homologous receiver domain CEQ48_19590 SM00091 PAS domain CEQ48_19590 SM00387 Histidine kinase-like ATPases CEQ48_19590 SM00388 His Kinase A (phosphoacceptor) domain CEQ48_19600 SM01230 CEQ48_19600 CEQ48_19650 SM00363 S4 RNA-binding domain CEQ48_19665 SM00382 ATPases associated with a variety of cellular activities CEQ48_19745 SM00316 Ribosomal protein S1-like RNA-binding domain CEQ48_19745 SM00732 Likely ribonuclease with RNase H fold. CEQ48_19755 SM00421 helix_turn_helix, Lux Regulon CEQ48_19765 SM00382 ATPases associated with a variety of cellular activities