locus-tag class description M4S28_00010 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded M4S28_00015 PF06005 Cell division protein ZapB M4S28_00060 PF00356 Bacterial regulatory proteins, lacI family M4S28_00070 PF00227 Proteasome subunit M4S28_00075 PF00004 ATPase family associated with various cellular activities (AAA) M4S28_00075 PF07724 AAA domain (Cdc48 subfamily) M4S28_00080 PF01040 UbiA prenyltransferase family M4S28_00085 PF03737 Aldolase/RraA M4S28_00090 PF06005 Cell division protein ZapB M4S28_00095 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded M4S28_00110 PF05656 Protein of unknown function (DUF805) M4S28_00120 PF00121 Triosephosphate isomerase M4S28_00125 PF04480 Protein of unknown function (DUF559) M4S28_00130 PF00365 Phosphofructokinase M4S28_00135 PF16916 Dimerisation domain of Zinc Transporter M4S28_00135 PF01545 Cation efflux family M4S28_00145 PF00072 Response regulator receiver domain M4S28_00145 PF00486 Transcriptional regulatory protein, C terminal M4S28_00150 PF00672 HAMP domain M4S28_00150 PF00512 His Kinase A (phospho-acceptor) domain M4S28_00150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_00150 PF16527 Two-component sensor protein CpxA, periplasmic domain M4S28_00155 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain M4S28_00155 PF02777 Iron/manganese superoxide dismutases, C-terminal domain M4S28_00160 PF00588 SpoU rRNA Methylase family M4S28_00165 PF04186 FxsA cytoplasmic membrane protein M4S28_00170 PF00206 Lyase M4S28_00170 PF10415 Fumarase C C-terminus M4S28_00175 PF03605 Anaerobic c4-dicarboxylate membrane transporter M4S28_00180 PF03606 C4-dicarboxylate anaerobic carrier M4S28_00190 PF00696 Amino acid kinase family M4S28_00195 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M4S28_00195 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M4S28_00200 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M4S28_00200 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M4S28_00205 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain M4S28_00205 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain M4S28_00210 PF01316 Arginine repressor, DNA binding domain M4S28_00210 PF02863 Arginine repressor, C-terminal domain M4S28_00215 PF02683 Cytochrome C biogenesis protein transmembrane region M4S28_00215 PF11412 Disulphide bond corrector protein DsbC M4S28_00220 PF00196 Bacterial regulatory proteins, luxR family M4S28_00220 PF00072 Response regulator receiver domain M4S28_00225 PF03471 Transporter associated domain M4S28_00225 PF02080 TrkA-C domain M4S28_00225 PF00999 Sodium/hydrogen exchanger family M4S28_00235 PF00474 Sodium:solute symporter family M4S28_00245 PF10415 Fumarase C C-terminus M4S28_00245 PF00206 Lyase M4S28_00250 PF00672 HAMP domain M4S28_00250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_00250 PF01627 Hpt domain M4S28_00250 PF00072 Response regulator receiver domain M4S28_00250 PF00512 His Kinase A (phospho-acceptor) domain M4S28_00255 PF12832 MFS_1 like family M4S28_00270 PF16177 Acetyl-coenzyme A synthetase N-terminus M4S28_00270 PF00501 AMP-binding enzyme M4S28_00270 PF13193 AMP-binding enzyme C-terminal domain M4S28_00275 PF01220 Dehydroquinase class II M4S28_00280 PF00364 Biotin-requiring enzyme M4S28_00285 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M4S28_00285 PF00289 Biotin carboxylase, N-terminal domain M4S28_00285 PF02785 Biotin carboxylase C-terminal domain M4S28_00295 PF01207 Dihydrouridine synthase (Dus) M4S28_00300 PF02954 Bacterial regulatory protein, Fis family M4S28_00305 PF13411 MerR HTH family regulatory protein M4S28_00310 PF02142 MGS-like domain M4S28_00310 PF01808 AICARFT/IMPCHase bienzyme M4S28_00315 PF02844 Phosphoribosylglycinamide synthetase, N domain M4S28_00315 PF02843 Phosphoribosylglycinamide synthetase, C domain M4S28_00315 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain M4S28_00325 PF00216 Bacterial DNA-binding protein M4S28_00330 PF00571 CBS domain M4S28_00330 PF01595 Cyclin M transmembrane N-terminal domain M4S28_00335 PF04222 Protein of unknown function (DUF416) M4S28_00345 PF03167 Uracil DNA glycosylase superfamily M4S28_00350 PF01208 Uroporphyrinogen decarboxylase (URO-D) M4S28_00355 PF09297 NADH pyrophosphatase zinc ribbon domain M4S28_00355 PF00293 NUDIX domain M4S28_00360 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ M4S28_00365 PF04997 RNA polymerase Rpb1, domain 1 M4S28_00365 PF00623 RNA polymerase Rpb1, domain 2 M4S28_00365 PF04983 RNA polymerase Rpb1, domain 3 M4S28_00365 PF05000 RNA polymerase Rpb1, domain 4 M4S28_00365 PF04998 RNA polymerase Rpb1, domain 5 M4S28_00370 PF04563 RNA polymerase beta subunit M4S28_00370 PF04561 RNA polymerase Rpb2, domain 2 M4S28_00370 PF04565 RNA polymerase Rpb2, domain 3 M4S28_00370 PF10385 RNA polymerase beta subunit external 1 domain M4S28_00370 PF04560 RNA polymerase Rpb2, domain 7 M4S28_00370 PF00562 RNA polymerase Rpb2, domain 6 M4S28_00375 PF16320 Ribosomal protein L7/L12 dimerisation domain M4S28_00375 PF00542 Ribosomal protein L7/L12 C-terminal domain M4S28_00380 PF00466 Ribosomal protein L10 M4S28_00385 PF00687 Ribosomal protein L1p/L10e family M4S28_00390 PF03946 Ribosomal protein L11, N-terminal domain M4S28_00390 PF00298 Ribosomal protein L11, RNA binding domain M4S28_00395 PF02357 Transcription termination factor nusG M4S28_00395 PF00467 KOW motif M4S28_00400 PF00584 SecE/Sec61-gamma subunits of protein translocation complex M4S28_00405 PF03143 Elongation factor Tu C-terminal domain M4S28_00405 PF03144 Elongation factor Tu domain 2 M4S28_00405 PF00009 Elongation factor Tu GTP binding domain M4S28_00430 PF00485 Phosphoribulokinase / Uridine kinase family M4S28_00435 PF02237 Biotin protein ligase C terminal domain M4S28_00435 PF08279 HTH domain M4S28_00435 PF03099 Biotin/lipoate A/B protein ligase family M4S28_00440 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain M4S28_00440 PF01565 FAD binding domain M4S28_00450 PF13091 PLD-like domain M4S28_00550 PF01177 Asp/Glu/Hydantoin racemase M4S28_00560 PF07715 TonB-dependent Receptor Plug Domain M4S28_00560 PF00593 TonB dependent receptor M4S28_00565 PF05958 tRNA (Uracil-5-)-methyltransferase M4S28_00575 PF00440 Bacterial regulatory proteins, tetR family M4S28_00585 PF07992 Pyridine nucleotide-disulphide oxidoreductase M4S28_00585 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M4S28_00590 PF01554 MatE M4S28_00595 PF04072 Leucine carboxyl methyltransferase M4S28_00600 PF00717 Peptidase S24-like M4S28_00600 PF01726 LexA DNA binding domain M4S28_00605 PF01219 Prokaryotic diacylglycerol kinase M4S28_00610 PF01553 Acyltransferase M4S28_00615 PF01040 UbiA prenyltransferase family M4S28_00620 PF04345 Chorismate lyase M4S28_00625 PF03748 Flagellar basal body-associated protein FliL M4S28_00630 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease M4S28_00630 PF01694 Rhomboid family M4S28_00635 PF00581 Rhodanese-like domain M4S28_00640 PF00140 Sigma-70 factor, region 1.2 M4S28_00640 PF04545 Sigma-70, region 4 M4S28_00640 PF04542 Sigma-70 region 2 M4S28_00645 PF18075 FtsX extracellular domain M4S28_00650 PF00005 ABC transporter M4S28_00655 PF02881 SRP54-type protein, helical bundle domain M4S28_00655 PF00448 SRP54-type protein, GTPase domain M4S28_00655 PF02881 SRP54-type protein, helical bundle domain M4S28_00655 PF00448 SRP54-type protein, GTPase domain M4S28_00670 PF01914 MarC family integral membrane protein M4S28_00710 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M4S28_00710 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M4S28_00715 PF01022 Bacterial regulatory protein, arsR family M4S28_00720 PF08668 HDOD domain M4S28_00720 PF00563 EAL domain M4S28_00725 PF01810 LysE type translocator M4S28_00730 PF12146 Serine aminopeptidase, S33 M4S28_00750 PF03942 DTW domain M4S28_00755 PF08495 FIST N domain M4S28_00755 PF00563 EAL domain M4S28_00755 PF10442 FIST C domain M4S28_00755 PF00990 Diguanylate cyclase, GGDEF domain M4S28_00760 PF00990 Diguanylate cyclase, GGDEF domain M4S28_00760 PF10442 FIST C domain M4S28_00760 PF08495 FIST N domain M4S28_00760 PF00563 EAL domain M4S28_00765 PF13419 Haloacid dehalogenase-like hydrolase M4S28_00770 PF00589 Phage integrase family M4S28_00770 PF02899 Phage integrase, N-terminal SAM-like domain M4S28_00780 PF01678 Diaminopimelate epimerase M4S28_00785 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain M4S28_00785 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain M4S28_00795 PF01491 Frataxin-like domain M4S28_00800 PF01295 Adenylate cyclase, class-I M4S28_00800 PF12633 Adenylate cyclase NT domain M4S28_00805 PF03900 Porphobilinogen deaminase, C-terminal domain M4S28_00805 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain M4S28_00810 PF02602 Uroporphyrinogen-III synthase HemD M4S28_00815 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase M4S28_00820 PF07219 HemY protein N-terminus M4S28_00825 PF01609 Transposase DDE domain M4S28_00825 PF13006 Insertion element 4 transposase N-terminal M4S28_00875 PF00175 Oxidoreductase NAD-binding domain M4S28_00880 PF00111 2Fe-2S iron-sulfur cluster binding domain M4S28_00880 PF00175 Oxidoreductase NAD-binding domain M4S28_00885 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase M4S28_00895 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M4S28_00895 PF07498 Rho termination factor, N-terminal domain M4S28_00895 PF07497 Rho termination factor, RNA-binding domain M4S28_00900 PF00085 Thioredoxin M4S28_00905 PF00270 DEAD/DEAH box helicase M4S28_00905 PF00271 Helicase conserved C-terminal domain M4S28_00910 PF02541 Ppx/GppA phosphatase family M4S28_00915 PF02592 Putative vitamin uptake transporter M4S28_00925 PF09382 RQC domain M4S28_00925 PF16124 RecQ zinc-binding M4S28_00925 PF00570 HRDC domain M4S28_00925 PF00271 Helicase conserved C-terminal domain M4S28_00925 PF00270 DEAD/DEAH box helicase M4S28_00930 PF00892 EamA-like transporter family M4S28_00935 PF12833 Helix-turn-helix domain M4S28_00935 PF02311 AraC-like ligand binding domain M4S28_00940 PF01810 LysE type translocator M4S28_00950 PF08534 Redoxin M4S28_00955 PF00580 UvrD/REP helicase N-terminal domain M4S28_00955 PF13361 UvrD-like helicase C-terminal domain M4S28_00965 PF05114 Protein of unknown function (DUF692) M4S28_00985 PF07690 Major Facilitator Superfamily M4S28_00990 PF03466 LysR substrate binding domain M4S28_00990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_00995 PF01321 Creatinase/Prolidase N-terminal domain M4S28_00995 PF00557 Metallopeptidase family M24 M4S28_00995 PF01321 Creatinase/Prolidase N-terminal domain M4S28_00995 PF00557 Metallopeptidase family M24 M4S28_01000 PF04055 Radical SAM superfamily M4S28_01000 PF06968 Biotin and Thiamin Synthesis associated domain M4S28_01005 PF05690 Thiazole biosynthesis protein ThiG M4S28_01010 PF02597 ThiS family M4S28_01020 PF02581 Thiamine monophosphate synthase M4S28_01025 PF13667 ThiC-associated domain M4S28_01025 PF01964 Radical SAM ThiC family M4S28_01030 PF02537 CrcB-like protein, Camphor Resistance (CrcB) M4S28_01035 PF07732 Multicopper oxidase M4S28_01035 PF07731 Multicopper oxidase M4S28_01035 PF00394 Multicopper oxidase M4S28_01080 PF00132 Bacterial transferase hexapeptide (six repeats) M4S28_01085 PF07369 Protein of unknown function (DUF1488) M4S28_01090 PF01488 Shikimate / quinate 5-dehydrogenase M4S28_01090 PF08501 Shikimate dehydrogenase substrate binding domain M4S28_01090 PF18317 Shikimate 5'-dehydrogenase C-terminal domain M4S28_01095 PF01218 Coproporphyrinogen III oxidase M4S28_01100 PF01300 Telomere recombination M4S28_01105 PF00731 AIR carboxylase M4S28_01110 PF02222 ATP-grasp domain M4S28_01110 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain M4S28_01115 PF01396 Topoisomerase DNA binding C4 zinc finger M4S28_01120 PF04361 Protein of unknown function (DUF494) M4S28_01125 PF02481 DNA recombination-mediator protein A M4S28_01125 PF17782 DprA winged helix domain M4S28_01135 PF01327 Polypeptide deformylase M4S28_01140 PF02911 Formyl transferase, C-terminal domain M4S28_01140 PF00551 Formyl transferase M4S28_01145 PF01189 16S rRNA methyltransferase RsmB/F M4S28_01145 PF01029 NusB family M4S28_01150 PF02080 TrkA-C domain M4S28_01150 PF02254 TrkA-N domain M4S28_01155 PF02386 Cation transport protein M4S28_01165 PF03006 Haemolysin-III related M4S28_01170 PF07070 SpoOM protein M4S28_01180 PF06288 Protein of unknown function (DUF1040) M4S28_01185 PF13746 4Fe-4S dicluster domain M4S28_01185 PF12801 4Fe-4S binding domain M4S28_01185 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase M4S28_01190 PF01636 Phosphotransferase enzyme family M4S28_01195 PF01323 DSBA-like thioredoxin domain M4S28_01205 PF01078 Magnesium chelatase, subunit ChlI M4S28_01205 PF13335 Magnesium chelatase, subunit ChlI C-terminal M4S28_01210 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M4S28_01210 PF00205 Thiamine pyrophosphate enzyme, central domain M4S28_01210 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M4S28_01220 PF01063 Amino-transferase class IV M4S28_01225 PF00920 Dehydratase family M4S28_01230 PF00291 Pyridoxal-phosphate dependent enzyme M4S28_01230 PF00585 C-terminal regulatory domain of Threonine dehydratase M4S28_01235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_01235 PF03466 LysR substrate binding domain M4S28_01240 PF07690 Major Facilitator Superfamily M4S28_01245 PF00132 Bacterial transferase hexapeptide (six repeats) M4S28_01245 PF12804 MobA-like NTP transferase domain M4S28_01250 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain M4S28_01250 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain M4S28_01255 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M4S28_01255 PF02874 ATP synthase alpha/beta family, beta-barrel domain M4S28_01260 PF00231 ATP synthase M4S28_01265 PF02874 ATP synthase alpha/beta family, beta-barrel domain M4S28_01265 PF00306 ATP synthase alpha/beta chain, C terminal domain M4S28_01265 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M4S28_01270 PF00213 ATP synthase delta (OSCP) subunit M4S28_01275 PF00430 ATP synthase B/B' CF(0) M4S28_01280 PF00137 ATP synthase subunit C M4S28_01285 PF00119 ATP synthase A chain M4S28_01290 PF03899 ATP synthase I chain M4S28_01295 PF02195 ParB-like nuclease domain M4S28_01295 PF17762 HTH domain found in ParB protein M4S28_01300 PF13614 AAA domain M4S28_01305 PF02527 rRNA small subunit methyltransferase G M4S28_01310 PF13932 GidA associated domain M4S28_01310 PF01134 Glucose inhibited division protein A M4S28_01315 PF00258 Flavodoxin M4S28_01320 PF01926 50S ribosome-binding GTPase M4S28_01320 PF12631 MnmE helical domain M4S28_01320 PF10396 GTP-binding protein TrmE N-terminus M4S28_01325 PF02096 60Kd inner membrane protein M4S28_01325 PF14849 YidC periplasmic domain M4S28_01330 PF01809 Putative membrane protein insertion efficiency factor M4S28_01335 PF00825 Ribonuclease P M4S28_01340 PF00468 Ribosomal protein L34 M4S28_01345 PF00005 ABC transporter M4S28_01350 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_01355 PF00497 Bacterial extracellular solute-binding proteins, family 3 M4S28_01360 PF00308 Bacterial dnaA protein M4S28_01360 PF08299 Bacterial dnaA protein helix-turn-helix M4S28_01360 PF11638 DnaA N-terminal domain M4S28_01365 PF00712 DNA polymerase III beta subunit, N-terminal domain M4S28_01365 PF02767 DNA polymerase III beta subunit, central domain M4S28_01365 PF02768 DNA polymerase III beta subunit, C-terminal domain M4S28_01370 PF02463 RecF/RecN/SMC N terminal domain M4S28_01375 PF00204 DNA gyrase B M4S28_01375 PF00986 DNA gyrase B subunit, carboxyl terminus M4S28_01375 PF18053 DNA gyrase B subunit insert domain M4S28_01375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_01375 PF01751 Toprim domain M4S28_01380 PF00011 Hsp20/alpha crystallin family M4S28_01385 PF00155 Aminotransferase class I and II M4S28_01390 PF00128 Alpha amylase, catalytic domain M4S28_01395 PF05746 DALR anticodon binding domain M4S28_01395 PF02092 Glycyl-tRNA synthetase beta subunit M4S28_01400 PF02091 Glycyl-tRNA synthetase alpha subunit M4S28_01405 PF01169 Uncharacterized protein family UPF0016 M4S28_01415 PF01206 Sulfurtransferase TusA M4S28_01425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_01425 PF03466 LysR substrate binding domain M4S28_01430 PF08240 Alcohol dehydrogenase GroES-like domain M4S28_01430 PF00107 Zinc-binding dehydrogenase M4S28_01435 PF02803 Thiolase, C-terminal domain M4S28_01435 PF00108 Thiolase, N-terminal domain M4S28_01440 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M4S28_01440 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M4S28_01440 PF00378 Enoyl-CoA hydratase/isomerase M4S28_01445 PF01205 Uncharacterized protein family UPF0029 M4S28_01445 PF09186 Domain of unknown function (DUF1949) M4S28_01450 PF02386 Cation transport protein M4S28_01455 PF12724 Flavodoxin domain M4S28_01500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_01500 PF03466 LysR substrate binding domain M4S28_01505 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain M4S28_01505 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain M4S28_01510 PF04380 Membrane fusogenic activity M4S28_01515 PF00873 AcrB/AcrD/AcrF family M4S28_01520 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M4S28_01525 PF00440 Bacterial regulatory proteins, tetR family M4S28_01530 PF00580 UvrD/REP helicase N-terminal domain M4S28_01530 PF13361 UvrD-like helicase C-terminal domain M4S28_01535 PF13442 Cytochrome C oxidase, cbb3-type, subunit III M4S28_01570 PF00005 ABC transporter M4S28_01570 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M4S28_01575 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M4S28_01580 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_01585 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_01585 PF12911 N-terminal TM domain of oligopeptide transport permease C M4S28_01595 PF03116 NQR2, RnfD, RnfE family M4S28_01605 PF07992 Pyridine nucleotide-disulphide oxidoreductase M4S28_01605 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M4S28_01610 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ M4S28_01615 PF01432 Peptidase family M3 M4S28_01620 PF01037 Lrp/AsnC ligand binding domain M4S28_01625 PF00563 EAL domain M4S28_01625 PF00990 Diguanylate cyclase, GGDEF domain M4S28_01625 PF08448 PAS fold M4S28_01630 PF04445 Putative SAM-dependent methyltransferase M4S28_01640 PF00892 EamA-like transporter family M4S28_01645 PF00582 Universal stress protein family M4S28_01650 PF00210 Ferritin-like domain M4S28_01655 PF10625 Universal stress protein B (UspB) M4S28_01670 PF00665 Integrase core domain M4S28_01675 PF11426 Tn7 transposition regulator TnsC M4S28_01675 PF13401 AAA domain M4S28_01695 PF02384 N-6 DNA Methylase M4S28_01695 PF12161 HsdM N-terminal domain M4S28_01700 PF01420 Type I restriction modification DNA specificity domain M4S28_01710 PF18766 SWI2/SNF2 ATPase M4S28_01710 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) M4S28_01710 PF11867 Domain of unknown function (DUF3387) M4S28_01725 PF05573 NosL M4S28_01730 PF12679 ABC-2 family transporter protein M4S28_01735 PF00005 ABC transporter M4S28_01740 PF05048 Periplasmic copper-binding protein (NosD) M4S28_01745 PF18793 Nitrous oxide reductase propeller repeat 2 M4S28_01745 PF18764 Nitrous oxide reductase propeller repeat M4S28_01750 PF04205 FMN-binding domain M4S28_01750 PF12801 4Fe-4S binding domain M4S28_01760 PF02646 RmuC family M4S28_01765 PF01209 ubiE/COQ5 methyltransferase family M4S28_01770 PF02036 SCP-2 sterol transfer family M4S28_01775 PF03109 ABC1 family M4S28_01780 PF02416 mttA/Hcf106 family M4S28_01785 PF02416 mttA/Hcf106 family M4S28_01790 PF00902 Sec-independent protein translocase protein (TatC) M4S28_01795 PF01026 TatD related DNase M4S28_01800 PF00490 Delta-aminolevulinic acid dehydratase M4S28_01810 PF00476 DNA polymerase family A M4S28_01810 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M4S28_01810 PF01367 5'-3' exonuclease, C-terminal SAM fold M4S28_01810 PF01612 3'-5' exonuclease M4S28_01820 PF01926 50S ribosome-binding GTPase M4S28_01825 PF00034 Cytochrome c M4S28_01835 PF04220 Der GTPase activator (YihI) M4S28_01840 PF10675 Protein of unknown function (DUF2489) M4S28_01845 PF06969 HemN C-terminal domain M4S28_01845 PF04055 Radical SAM superfamily M4S28_01850 PF00990 Diguanylate cyclase, GGDEF domain M4S28_01850 PF00563 EAL domain M4S28_01850 PF03707 Bacterial signalling protein N terminal repeat M4S28_01855 PF00072 Response regulator receiver domain M4S28_01855 PF00158 Sigma-54 interaction domain M4S28_01855 PF02954 Bacterial regulatory protein, Fis family M4S28_01860 PF00512 His Kinase A (phospho-acceptor) domain M4S28_01860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_01860 PF00989 PAS fold M4S28_01870 PF00120 Glutamine synthetase, catalytic domain M4S28_01870 PF03951 Glutamine synthetase, beta-Grasp domain M4S28_01875 PF00679 Elongation factor G C-terminus M4S28_01875 PF00009 Elongation factor Tu GTP binding domain M4S28_01875 PF03144 Elongation factor Tu domain 2 M4S28_01890 PF03631 Virulence factor BrkB M4S28_01895 PF02580 D-Tyr-tRNA(Tyr) deacylase M4S28_01900 PF00583 Acetyltransferase (GNAT) family M4S28_01900 PF09500 Putative thioesterase (yiiD_Cterm) M4S28_01910 PF01293 Phosphoenolpyruvate carboxykinase M4S28_01915 PF01430 Hsp33 protein M4S28_01920 PF01479 S4 domain M4S28_01925 PF11356 Type II secretion system protein C M4S28_01930 PF00263 Bacterial type II and III secretion system protein M4S28_01930 PF03958 Bacterial type II/III secretion system short domain M4S28_01935 PF00437 Type II/IV secretion system protein M4S28_01940 PF00482 Type II secretion system (T2SS), protein F M4S28_01945 PF07963 Prokaryotic N-terminal methylation motif M4S28_01945 PF08334 Type II secretion system (T2SS), protein G M4S28_01950 PF12019 Type II transport protein GspH M4S28_01955 PF02501 Type II secretion system (T2SS), protein I M4S28_01955 PF07963 Prokaryotic N-terminal methylation motif M4S28_01960 PF07963 Prokaryotic N-terminal methylation motif M4S28_01960 PF11612 Type II secretion system (T2SS), protein J M4S28_01965 PF03934 Type II secretion system (T2SS), protein K M4S28_01970 PF12693 GspL periplasmic domain M4S28_01970 PF05134 Type II secretion system (T2SS), protein L M4S28_01975 PF04612 Type II secretion system (T2SS), protein M M4S28_01980 PF01203 Type II secretion system (T2SS), protein N M4S28_01985 PF00459 Inositol monophosphatase family M4S28_01990 PF00293 NUDIX domain M4S28_01995 PF01521 Iron-sulphur cluster biosynthesis M4S28_01995 PF01106 NifU-like domain M4S28_02000 PF00156 Phosphoribosyl transferase domain M4S28_02005 PF00561 alpha/beta hydrolase fold M4S28_02015 PF16921 Tex protein YqgF-like domain M4S28_02015 PF00575 S1 RNA binding domain M4S28_02015 PF17674 HHH domain M4S28_02015 PF09371 Tex-like protein N-terminal domain M4S28_02020 PF01272 Transcription elongation factor, GreA/GreB, C-term M4S28_02020 PF03449 Transcription elongation factor, N-terminal M4S28_02025 PF00072 Response regulator receiver domain M4S28_02025 PF00486 Transcriptional regulatory protein, C terminal M4S28_02030 PF00512 His Kinase A (phospho-acceptor) domain M4S28_02030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_02030 PF00672 HAMP domain M4S28_02035 PF00270 DEAD/DEAH box helicase M4S28_02035 PF00271 Helicase conserved C-terminal domain M4S28_02035 PF17191 RecG wedge domain M4S28_02040 PF13291 ACT domain M4S28_02040 PF04607 Region found in RelA / SpoT proteins M4S28_02040 PF02824 TGS domain M4S28_02045 PF01192 RNA polymerase Rpb6 M4S28_02050 PF00625 Guanylate kinase M4S28_02055 PF00860 Permease family M4S28_02070 PF00313 'Cold-shock' DNA-binding domain M4S28_02075 PF08340 Domain of unknown function (DUF1732) M4S28_02075 PF03755 YicC-like family, N-terminal region M4S28_02080 PF01138 3' exoribonuclease family, domain 1 M4S28_02080 PF03725 3' exoribonuclease family, domain 2 M4S28_02085 PF00156 Phosphoribosyl transferase domain M4S28_02090 PF03279 Bacterial lipid A biosynthesis acyltransferase M4S28_02095 PF00440 Bacterial regulatory proteins, tetR family M4S28_02100 PF04127 DNA / pantothenate metabolism flavoprotein M4S28_02100 PF02441 Flavoprotein M4S28_02105 PF04002 RadC-like JAB domain M4S28_02110 PF00830 Ribosomal L28 family M4S28_02115 PF00471 Ribosomal protein L33 M4S28_02125 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain M4S28_02125 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain M4S28_02125 PF06827 Zinc finger found in FPG and IleRS M4S28_02130 PF01370 NAD dependent epimerase/dehydratase family M4S28_02140 PF01467 Cytidylyltransferase-like M4S28_02145 PF01075 Glycosyltransferase family 9 (heptosyltransferase) M4S28_02155 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) M4S28_02165 PF00535 Glycosyl transferase family 2 M4S28_02180 PF13439 Glycosyltransferase Family 4 M4S28_02180 PF00534 Glycosyl transferases group 1 M4S28_02185 PF00132 Bacterial transferase hexapeptide (six repeats) M4S28_02200 PF03279 Bacterial lipid A biosynthesis acyltransferase M4S28_02205 PF01370 NAD dependent epimerase/dehydratase family M4S28_02210 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M4S28_02210 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M4S28_02210 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M4S28_02215 PF00440 Bacterial regulatory proteins, tetR family M4S28_02215 PF08360 QacR-like protein, C-terminal region M4S28_02220 PF01551 Peptidase family M23 M4S28_02225 PF00132 Bacterial transferase hexapeptide (six repeats) M4S28_02225 PF06426 Serine acetyltransferase, N-terminal M4S28_02230 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus M4S28_02230 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus M4S28_02235 PF02556 Preprotein translocase subunit SecB M4S28_02240 PF00581 Rhodanese-like domain M4S28_02260 PF06082 Exopolysaccharide biosynthesis protein YbjH M4S28_02265 PF10531 SLBB domain M4S28_02265 PF18412 Outer-membrane lipoprotein Wza C-terminal domain M4S28_02265 PF02563 Polysaccharide biosynthesis/export protein M4S28_02270 PF01451 Low molecular weight phosphotyrosine protein phosphatase M4S28_02275 PF13807 G-rich domain on putative tyrosine kinase M4S28_02275 PF13614 AAA domain M4S28_02275 PF02706 Chain length determinant protein M4S28_02280 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M4S28_02280 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M4S28_02280 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M4S28_02285 PF01370 NAD dependent epimerase/dehydratase family M4S28_02295 PF02719 Polysaccharide biosynthesis protein M4S28_02300 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family M4S28_02305 PF02348 Cytidylyltransferase M4S28_02315 PF03102 NeuB family M4S28_02315 PF08666 SAF domain M4S28_02320 PF06508 Queuosine biosynthesis protein QueC M4S28_02325 PF00117 Glutamine amidotransferase class-I M4S28_02365 PF00733 Asparagine synthase M4S28_02365 PF13537 Glutamine amidotransferase domain M4S28_02370 PF00132 Bacterial transferase hexapeptide (six repeats) M4S28_02370 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD M4S28_02375 PF01757 Acyltransferase family M4S28_02380 PF13477 Glycosyl transferase 4-like M4S28_02380 PF00534 Glycosyl transferases group 1 M4S28_02385 PF00953 Glycosyl transferase family 4 M4S28_02390 PF01676 Metalloenzyme superfamily M4S28_02390 PF06415 BPG-independent PGAM N-terminus (iPGM_N) M4S28_02405 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M4S28_02405 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M4S28_02410 PF01554 MatE M4S28_02415 PF02706 Chain length determinant protein M4S28_02420 PF00166 Chaperonin 10 Kd subunit M4S28_02425 PF00118 TCP-1/cpn60 chaperonin family M4S28_02440 PF00990 Diguanylate cyclase, GGDEF domain M4S28_02445 PF02308 MgtC family M4S28_02450 PF08334 Type II secretion system (T2SS), protein G M4S28_02450 PF07963 Prokaryotic N-terminal methylation motif M4S28_02455 PF04055 Radical SAM superfamily M4S28_02460 PF01132 Elongation factor P (EF-P) OB domain M4S28_02460 PF08207 Elongation factor P (EF-P) KOW-like domain M4S28_02460 PF09285 Elongation factor P, C-terminal M4S28_02465 PF02313 Fumarate reductase subunit D M4S28_02470 PF02300 Fumarate reductase subunit C M4S28_02475 PF13085 2Fe-2S iron-sulfur cluster binding domain M4S28_02475 PF13183 4Fe-4S dicluster domain M4S28_02480 PF00890 FAD binding domain M4S28_02480 PF02910 Fumarate reductase flavoprotein C-term M4S28_02485 PF00152 tRNA synthetases class II (D, K and N) M4S28_02495 PF02743 Cache domain M4S28_02495 PF00672 HAMP domain M4S28_02495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M4S28_02500 PF03600 Citrate transporter M4S28_02500 PF02080 TrkA-C domain M4S28_02505 PF02666 Phosphatidylserine decarboxylase M4S28_02510 PF03193 RsgA GTPase M4S28_02515 PF00929 Exonuclease M4S28_02605 PF08331 Domain of unknown function (DUF1730) M4S28_02610 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE M4S28_02615 PF01520 N-acetylmuramoyl-L-alanine amidase M4S28_02620 PF01119 DNA mismatch repair protein, C-terminal domain M4S28_02620 PF08676 MutL C terminal dimerisation domain M4S28_02630 PF17209 Hfq protein M4S28_02635 PF16360 GTP-binding GTPase Middle Region M4S28_02635 PF13167 GTP-binding GTPase N-terminal M4S28_02635 PF01926 50S ribosome-binding GTPase M4S28_02640 PF01145 SPFH domain / Band 7 family M4S28_02640 PF12221 Bacterial membrane protein N terminal M4S28_02645 PF01145 SPFH domain / Band 7 family M4S28_02650 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) M4S28_02655 PF00709 Adenylosuccinate synthetase M4S28_02660 PF08238 Sel1 repeat M4S28_02665 PF01979 Amidohydrolase family M4S28_02670 PF00773 RNB domain M4S28_02670 PF17876 Cold shock domain M4S28_02670 PF08461 Ribonuclease R winged-helix domain M4S28_02670 PF08206 Ribonuclease B OB domain M4S28_02670 PF00575 S1 RNA binding domain M4S28_02675 PF08032 RNA 2'-O ribose methyltransferase substrate binding M4S28_02675 PF00588 SpoU rRNA Methylase family M4S28_02680 PF01250 Ribosomal protein S6 M4S28_02685 PF01084 Ribosomal protein S18 M4S28_02690 PF03948 Ribosomal protein L9, C-terminal domain M4S28_02690 PF01281 Ribosomal protein L9, N-terminal domain M4S28_02700 PF00772 DnaB-like helicase N terminal domain M4S28_02700 PF03796 DnaB-like helicase C terminal domain M4S28_02705 PF01168 Alanine racemase, N-terminal domain M4S28_02705 PF00842 Alanine racemase, C-terminal domain M4S28_02715 PF01894 Uncharacterised protein family UPF0047 M4S28_02720 PF00342 Phosphoglucose isomerase M4S28_02725 PF01609 Transposase DDE domain M4S28_02725 PF13006 Insertion element 4 transposase N-terminal M4S28_02735 PF01475 Ferric uptake regulator family M4S28_02755 PF01207 Dihydrouridine synthase (Dus) M4S28_02760 PF09583 Phage shock protein G (Phageshock_PspG) M4S28_02775 PF00175 Oxidoreductase NAD-binding domain M4S28_02775 PF00258 Flavodoxin M4S28_02775 PF00667 FAD binding domain M4S28_02780 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M4S28_02780 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M4S28_02785 PF01507 Phosphoadenosine phosphosulfate reductase family M4S28_02860 PF00999 Sodium/hydrogen exchanger family M4S28_02865 PF02310 B12 binding domain M4S28_02865 PF02607 B12 binding domain M4S28_02865 PF02965 Vitamin B12 dependent methionine synthase, activation domain M4S28_02865 PF00809 Pterin binding enzyme M4S28_02865 PF02574 Homocysteine S-methyltransferase M4S28_02870 PF01842 ACT domain M4S28_02870 PF00696 Amino acid kinase family M4S28_02875 PF00266 Aminotransferase class-V M4S28_02885 PF00005 ABC transporter M4S28_02885 PF17755 UvrA DNA-binding domain M4S28_02885 PF17760 UvrA interaction domain M4S28_02890 PF00483 Nucleotidyl transferase M4S28_02895 PF00196 Bacterial regulatory proteins, luxR family M4S28_02900 PF00436 Single-strand binding protein family M4S28_02905 PF00563 EAL domain M4S28_02905 PF17157 Gammaproteobacterial periplasmic sensor domain M4S28_02905 PF00990 Diguanylate cyclase, GGDEF domain M4S28_02925 PF03958 Bacterial type II/III secretion system short domain M4S28_02925 PF00263 Bacterial type II and III secretion system protein M4S28_02930 PF13401 AAA domain M4S28_02930 PF01471 Putative peptidoglycan binding domain M4S28_02940 PF00437 Type II/IV secretion system protein M4S28_02940 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M4S28_02945 PF00482 Type II secretion system (T2SS), protein F M4S28_02955 PF07963 Prokaryotic N-terminal methylation motif M4S28_02960 PF07963 Prokaryotic N-terminal methylation motif M4S28_02995 PF04085 rod shape-determining protein MreC M4S28_03000 PF04093 rod shape-determining protein MreD M4S28_03005 PF02545 Maf-like protein M4S28_03010 PF10150 Ribonuclease E/G family M4S28_03010 PF00575 S1 RNA binding domain M4S28_03020 PF00795 Carbon-nitrogen hydrolase M4S28_03025 PF01523 Putative modulator of DNA gyrase M4S28_03030 PF02562 PhoH-like protein M4S28_03030 PF13638 PIN domain M4S28_03035 PF00271 Helicase conserved C-terminal domain M4S28_03035 PF12137 RNA polymerase recycling family C-terminal M4S28_03035 PF00176 SNF2 family N-terminal domain M4S28_03035 PF18339 RapA N-terminal Tudor like domain 1 M4S28_03035 PF18337 RapA N-terminal Tudor like domain M4S28_03045 PF00849 RNA pseudouridylate synthase M4S28_03050 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M4S28_03050 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M4S28_03055 PF00582 Universal stress protein family M4S28_03070 PF01316 Arginine repressor, DNA binding domain M4S28_03070 PF02863 Arginine repressor, C-terminal domain M4S28_03075 PF00056 lactate/malate dehydrogenase, NAD binding domain M4S28_03075 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain M4S28_03085 PF00348 Polyprenyl synthetase M4S28_03090 PF00829 Ribosomal prokaryotic L21 protein M4S28_03095 PF01016 Ribosomal L27 protein M4S28_03100 PF01018 GTP1/OBG M4S28_03100 PF01926 50S ribosome-binding GTPase M4S28_03105 PF06738 Putative threonine/serine exporter M4S28_03110 PF12821 Threonine/Serine exporter, ThrE M4S28_03115 PF00186 Dihydrofolate reductase M4S28_03120 PF00149 Calcineurin-like phosphoesterase M4S28_03125 PF04379 ApaG domain M4S28_03130 PF00398 Ribosomal RNA adenine dimethylase M4S28_03135 PF04166 Pyridoxal phosphate biosynthetic protein PdxA M4S28_03140 PF09312 SurA N-terminal domain M4S28_03140 PF00639 PPIC-type PPIASE domain M4S28_03145 PF04453 LPS transport system D M4S28_03145 PF03968 OstA-like protein M4S28_03150 PF00226 DnaJ domain M4S28_03150 PF05099 Tellurite resistance protein TerB M4S28_03165 PF00694 Aconitase C-terminal domain M4S28_03170 PF00330 Aconitase family (aconitate hydratase) M4S28_03175 PF00180 Isocitrate/isopropylmalate dehydrogenase M4S28_03180 PF08502 LeuA allosteric (dimerisation) domain M4S28_03180 PF00682 HMGL-like M4S28_03195 PF00873 AcrB/AcrD/AcrF family M4S28_03200 PF01569 PAP2 superfamily M4S28_03210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_03210 PF03466 LysR substrate binding domain M4S28_03215 PF00501 AMP-binding enzyme M4S28_03220 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M4S28_03220 PF00205 Thiamine pyrophosphate enzyme, central domain M4S28_03220 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M4S28_03225 PF10369 Small subunit of acetolactate synthase M4S28_03230 PF00990 Diguanylate cyclase, GGDEF domain M4S28_03230 PF17158 Membrane-associated sensor, integral membrane domain M4S28_03235 PF07729 FCD domain M4S28_03235 PF00392 Bacterial regulatory proteins, gntR family M4S28_03240 PF00224 Pyruvate kinase, barrel domain M4S28_03240 PF02887 Pyruvate kinase, alpha/beta domain M4S28_03245 PF08220 DeoR-like helix-turn-helix domain M4S28_03245 PF00455 DeoR C terminal sensor domain M4S28_03250 PF01380 SIS domain M4S28_03255 PF01053 Cys/Met metabolism PLP-dependent enzyme M4S28_03265 PF04542 Sigma-70 region 2 M4S28_03265 PF00140 Sigma-70 factor, region 1.2 M4S28_03265 PF04545 Sigma-70, region 4 M4S28_03265 PF04539 Sigma-70 region 3 M4S28_03265 PF03979 Sigma-70 factor, region 1.1 M4S28_03265 PF04546 Sigma-70, non-essential region M4S28_03270 PF08278 DNA primase DnaG DnaB-binding M4S28_03270 PF01807 CHC2 zinc finger M4S28_03270 PF08275 DNA primase catalytic core, N-terminal domain M4S28_03270 PF10410 DnaB-helicase binding domain of primase M4S28_03275 PF09424 Yqey-like protein M4S28_03280 PF01165 Ribosomal protein S21 M4S28_03285 PF00814 Glycoprotease family M4S28_03290 PF12697 Alpha/beta hydrolase family M4S28_03295 PF02660 Glycerol-3-phosphate acyltransferase M4S28_03300 PF02152 Dihydroneopterin aldolase M4S28_03305 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) M4S28_03310 PF02673 Bacitracin resistance protein BacA M4S28_03315 PF01966 HD domain M4S28_03315 PF01743 Poly A polymerase head domain M4S28_03315 PF12627 Probable RNA and SrmB- binding site of polymerase A M4S28_03320 PF01471 Putative peptidoglycan binding domain M4S28_03320 PF13401 AAA domain M4S28_03330 PF08239 Bacterial SH3 domain M4S28_03335 PF01384 Phosphate transporter family M4S28_03340 PF01865 Protein of unknown function DUF47 M4S28_03345 PF01928 CYTH domain M4S28_03350 PF07885 Ion channel M4S28_03355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M4S28_03355 PF02743 Cache domain M4S28_03355 PF00672 HAMP domain M4S28_03360 PF08335 GlnD PII-uridylyltransferase M4S28_03360 PF03710 Glutamate-ammonia ligase adenylyltransferase M4S28_03365 PF01467 Cytidylyltransferase-like M4S28_03365 PF00294 pfkB family carbohydrate kinase M4S28_03370 PF02321 Outer membrane efflux protein M4S28_03375 PF00293 NUDIX domain M4S28_03380 PF06853 Protein of unknown function (DUF1249) M4S28_03385 PF00149 Calcineurin-like phosphoesterase M4S28_03390 PF05728 Uncharacterised protein family (UPF0227) M4S28_03395 PF01751 Toprim domain M4S28_03395 PF00986 DNA gyrase B subunit, carboxyl terminus M4S28_03395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_03395 PF00204 DNA gyrase B M4S28_03400 PF03989 DNA gyrase C-terminal domain, beta-propeller M4S28_03400 PF00521 DNA gyrase/topoisomerase IV, subunit A M4S28_03405 PF13180 PDZ domain M4S28_03410 PF00595 PDZ domain M4S28_03415 PF06295 Protein of unknown function (DUF1043) M4S28_03420 PF03969 AFG1-like ATPase M4S28_03425 PF00572 Ribosomal protein L13 M4S28_03430 PF00380 Ribosomal protein S9/S16 M4S28_03435 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal M4S28_03435 PF00355 Rieske [2Fe-2S] domain M4S28_03440 PF00032 Cytochrome b(C-terminal)/b6/petD M4S28_03440 PF00033 Cytochrome b/b6/petB M4S28_03445 PF02167 Cytochrome C1 family M4S28_03450 PF00043 Glutathione S-transferase, C-terminal domain M4S28_03450 PF02798 Glutathione S-transferase, N-terminal domain M4S28_03455 PF04386 Stringent starvation protein B M4S28_03460 PF04972 BON domain M4S28_03465 PF13580 SIS domain M4S28_03470 PF02021 Uncharacterised protein family UPF0102 M4S28_03475 PF04348 LppC putative lipoprotein M4S28_03480 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M4S28_03490 PF01795 MraW methylase family M4S28_03495 PF04999 Cell division protein FtsL M4S28_03500 PF03717 Penicillin-binding Protein dimerisation domain M4S28_03500 PF00905 Penicillin binding protein transpeptidase domain M4S28_03505 PF08245 Mur ligase middle domain M4S28_03505 PF02875 Mur ligase family, glutamate ligase domain M4S28_03505 PF01225 Mur ligase family, catalytic domain M4S28_03510 PF08245 Mur ligase middle domain M4S28_03510 PF02875 Mur ligase family, glutamate ligase domain M4S28_03510 PF01225 Mur ligase family, catalytic domain M4S28_03515 PF00953 Glycosyl transferase family 4 M4S28_03515 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 M4S28_03520 PF08245 Mur ligase middle domain M4S28_03520 PF02875 Mur ligase family, glutamate ligase domain M4S28_03525 PF01098 Cell cycle protein M4S28_03530 PF04101 Glycosyltransferase family 28 C-terminal domain M4S28_03530 PF03033 Glycosyltransferase family 28 N-terminal domain M4S28_03535 PF01225 Mur ligase family, catalytic domain M4S28_03535 PF08245 Mur ligase middle domain M4S28_03535 PF02875 Mur ligase family, glutamate ligase domain M4S28_03540 PF08478 POTRA domain, FtsQ-type M4S28_03540 PF03799 Cell division protein FtsQ M4S28_03545 PF02491 SHS2 domain inserted in FTSA M4S28_03550 PF00091 Tubulin/FtsZ family, GTPase domain M4S28_03550 PF12327 FtsZ family, C-terminal domain M4S28_03555 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase M4S28_03560 PF01043 SecA preprotein cross-linking domain M4S28_03560 PF07517 SecA DEAD-like domain M4S28_03560 PF02810 SEC-C motif M4S28_03560 PF07516 SecA Wing and Scaffold domain M4S28_03565 PF00293 NUDIX domain M4S28_03570 PF01113 Dihydrodipicolinate reductase, N-terminus M4S28_03570 PF05173 Dihydrodipicolinate reductase, C-terminus M4S28_03575 PF00117 Glutamine amidotransferase class-I M4S28_03575 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain M4S28_03580 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M4S28_03580 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain M4S28_03580 PF02142 MGS-like domain M4S28_03585 PF01925 Sulfite exporter TauE/SafE M4S28_03590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_03590 PF03466 LysR substrate binding domain M4S28_03600 PF03458 UPF0126 domain M4S28_03605 PF01497 Periplasmic binding protein M4S28_03615 PF01048 Phosphorylase superfamily M4S28_03625 PF07992 Pyridine nucleotide-disulphide oxidoreductase M4S28_03625 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster M4S28_03630 PF04898 Glutamate synthase central domain M4S28_03630 PF01645 Conserved region in glutamate synthase M4S28_03630 PF01493 GXGXG motif M4S28_03630 PF00310 Glutamine amidotransferases class-II M4S28_03635 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster M4S28_03635 PF07992 Pyridine nucleotide-disulphide oxidoreductase M4S28_03640 PF01645 Conserved region in glutamate synthase M4S28_03640 PF00310 Glutamine amidotransferases class-II M4S28_03640 PF04898 Glutamate synthase central domain M4S28_03640 PF01493 GXGXG motif M4S28_03645 PF16199 Radical_SAM C-terminal domain M4S28_03645 PF04055 Radical SAM superfamily M4S28_03650 PF00990 Diguanylate cyclase, GGDEF domain M4S28_03650 PF00563 EAL domain M4S28_03650 PF01590 GAF domain M4S28_03650 PF00360 Phytochrome region M4S28_03655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_03655 PF00512 His Kinase A (phospho-acceptor) domain M4S28_03655 PF18415 Histidine kinase receptor ArcB trans-membrane domain M4S28_03655 PF00072 Response regulator receiver domain M4S28_03655 PF00989 PAS fold M4S28_03655 PF01627 Hpt domain M4S28_03665 PF00072 Response regulator receiver domain M4S28_03665 PF00486 Transcriptional regulatory protein, C terminal M4S28_03670 PF03737 Aldolase/RraA M4S28_03680 PF00742 Homoserine dehydrogenase M4S28_03680 PF13840 ACT domain M4S28_03680 PF03447 Homoserine dehydrogenase, NAD binding domain M4S28_03680 PF00696 Amino acid kinase family M4S28_03680 PF01842 ACT domain M4S28_03685 PF08544 GHMP kinases C terminal M4S28_03685 PF00288 GHMP kinases N terminal domain M4S28_03690 PF00291 Pyridoxal-phosphate dependent enzyme M4S28_03690 PF14821 Threonine synthase N terminus M4S28_03695 PF01228 Glycine radical M4S28_03700 PF01261 Xylose isomerase-like TIM barrel M4S28_03705 PF03167 Uracil DNA glycosylase superfamily M4S28_03720 PF01235 Sodium:alanine symporter family M4S28_03730 PF03883 Peroxide stress protein YaaA M4S28_03735 PF00271 Helicase conserved C-terminal domain M4S28_03735 PF00270 DEAD/DEAH box helicase M4S28_03740 PF05175 Methyltransferase small domain M4S28_03745 PF05525 Branched-chain amino acid transport protein M4S28_03750 PF00258 Flavodoxin M4S28_03755 PF00589 Phage integrase family M4S28_03755 PF02899 Phage integrase, N-terminal SAM-like domain M4S28_03760 PF13098 Thioredoxin-like domain M4S28_03760 PF10411 Disulfide bond isomerase protein N-terminus M4S28_03765 PF01368 DHH family M4S28_03765 PF17768 RecJ OB domain M4S28_03765 PF02272 DHHA1 domain M4S28_03775 PF00152 tRNA synthetases class II (D, K and N) M4S28_03775 PF01336 OB-fold nucleic acid binding domain M4S28_03780 PF00158 Sigma-54 interaction domain M4S28_03780 PF02830 V4R domain M4S28_03780 PF06505 Activator of aromatic catabolism M4S28_03780 PF02954 Bacterial regulatory protein, Fis family M4S28_03795 PF02976 DNA mismatch repair enzyme MutH M4S28_03800 PF00293 NUDIX domain M4S28_03805 PF02896 PEP-utilising enzyme, TIM barrel domain M4S28_03805 PF05524 PEP-utilising enzyme, N-terminal M4S28_03805 PF00391 PEP-utilising enzyme, mobile domain M4S28_03805 PF01590 GAF domain M4S28_03810 PF01925 Sulfite exporter TauE/SafE M4S28_03815 PF01790 Prolipoprotein diacylglyceryl transferase M4S28_03820 PF00303 Thymidylate synthase M4S28_03825 PF00486 Transcriptional regulatory protein, C terminal M4S28_03825 PF00072 Response regulator receiver domain M4S28_03835 PF02690 Na+/Pi-cotransporter M4S28_03840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_03840 PF03466 LysR substrate binding domain M4S28_03845 PF01022 Bacterial regulatory protein, arsR family M4S28_03850 PF01649 Ribosomal protein S20 M4S28_03855 PF03023 Lipid II flippase MurJ M4S28_03860 PF06574 FAD synthetase M4S28_03860 PF01687 Riboflavin kinase M4S28_03865 PF08264 Anticodon-binding domain of tRNA M4S28_03865 PF00133 tRNA synthetases class I (I, L, M and V) M4S28_03865 PF06827 Zinc finger found in FPG and IleRS M4S28_03870 PF01252 Signal peptidase (SPase) II M4S28_03875 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M4S28_03880 PF02401 LytB protein M4S28_03885 PF04397 LytTr DNA-binding domain M4S28_03885 PF00072 Response regulator receiver domain M4S28_03890 PF07694 5TMR of 5TMR-LYT M4S28_03890 PF06580 Histidine kinase M4S28_03895 PF13006 Insertion element 4 transposase N-terminal M4S28_03895 PF01609 Transposase DDE domain M4S28_03900 PF02554 Carbon starvation protein CstA M4S28_03910 PF13580 SIS domain M4S28_03915 PF03702 Anhydro-N-acetylmuramic acid kinase M4S28_03920 PF01869 BadF/BadG/BcrA/BcrD ATPase family M4S28_03930 PF01380 SIS domain M4S28_03930 PF01418 Helix-turn-helix domain, rpiR family M4S28_03935 PF00933 Glycosyl hydrolase family 3 N terminal domain M4S28_03940 PF00793 DAHP synthetase I family M4S28_03945 PF02153 Prephenate dehydrogenase M4S28_03945 PF01817 Chorismate mutase type II M4S28_03950 PF01551 Peptidase family M23 M4S28_03950 PF04225 Opacity-associated protein A LysM-like domain M4S28_03955 PF07238 PilZ domain M4S28_03960 PF00005 ABC transporter M4S28_03960 PF12848 ABC transporter M4S28_03965 PF14718 Soluble lytic murein transglycosylase L domain M4S28_03965 PF01464 Transglycosylase SLT domain M4S28_03970 PF01371 Trp repressor protein M4S28_03975 PF01931 Protein of unknown function DUF84 M4S28_03980 PF00563 EAL domain M4S28_03980 PF00990 Diguanylate cyclase, GGDEF domain M4S28_03985 PF01817 Chorismate mutase type II M4S28_03985 PF00800 Prephenate dehydratase M4S28_03990 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein M4S28_03995 PF00497 Bacterial extracellular solute-binding proteins, family 3 M4S28_03995 PF01464 Transglycosylase SLT domain M4S28_04000 PF13525 Outer membrane lipoprotein M4S28_04005 PF01479 S4 domain M4S28_04005 PF00849 RNA pseudouridylate synthase M4S28_04010 PF02578 Multi-copper polyphenol oxidoreductase laccase M4S28_04015 PF10431 C-terminal, D2-small domain, of ClpB protein M4S28_04015 PF02861 Clp amino terminal domain, pathogenicity island component M4S28_04015 PF17871 AAA lid domain M4S28_04015 PF07724 AAA domain (Cdc48 subfamily) M4S28_04015 PF00004 ATPase family associated with various cellular activities (AAA) M4S28_04050 PF03411 Penicillin-insensitive murein endopeptidase M4S28_04060 PF12838 4Fe-4S dicluster domain M4S28_04065 PF01136 Peptidase family U32 M4S28_04065 PF16325 Peptidase family U32 C-terminal domain M4S28_04070 PF04381 Putative exonuclease, RdgC M4S28_04075 PF00072 Response regulator receiver domain M4S28_04075 PF00486 Transcriptional regulatory protein, C terminal M4S28_04080 PF00989 PAS fold M4S28_04080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_04080 PF11808 Phosphate regulon sensor protein PhoR M4S28_04080 PF00512 His Kinase A (phospho-acceptor) domain M4S28_04085 PF12849 PBP superfamily domain M4S28_04090 PF02541 Ppx/GppA phosphatase family M4S28_04095 PF02503 Polyphosphate kinase middle domain M4S28_04095 PF17941 Polyphosphate kinase C-terminal domain 1 M4S28_04095 PF13090 Polyphosphate kinase C-terminal domain 2 M4S28_04095 PF13089 Polyphosphate kinase N-terminal domain M4S28_04100 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_04105 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_04110 PF00005 ABC transporter M4S28_04115 PF01895 PhoU domain M4S28_04130 PF03466 LysR substrate binding domain M4S28_04130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_04135 PF03932 CutC family M4S28_04140 PF10417 C-terminal domain of 1-Cys peroxiredoxin M4S28_04140 PF00578 AhpC/TSA family M4S28_04145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_04145 PF03466 LysR substrate binding domain M4S28_04150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M4S28_04155 PF00571 CBS domain M4S28_04160 PF02547 Queuosine biosynthesis protein M4S28_04165 PF01702 Queuine tRNA-ribosyltransferase M4S28_04170 PF02699 Preprotein translocase subunit M4S28_04175 PF02355 Protein export membrane protein M4S28_04175 PF07549 SecD/SecF GG Motif M4S28_04175 PF13721 SecD export protein N-terminal TM region M4S28_04180 PF07549 SecD/SecF GG Motif M4S28_04180 PF02355 Protein export membrane protein M4S28_04185 PF00459 Inositol monophosphatase family M4S28_04190 PF00588 SpoU rRNA Methylase family M4S28_04195 PF02082 Transcriptional regulator M4S28_04200 PF00266 Aminotransferase class-V M4S28_04205 PF01592 NifU-like N terminal domain M4S28_04210 PF01521 Iron-sulphur cluster biosynthesis M4S28_04215 PF00226 DnaJ domain M4S28_04215 PF07743 HSCB C-terminal oligomerisation domain M4S28_04220 PF00012 Hsp70 protein M4S28_04225 PF00111 2Fe-2S iron-sulfur cluster binding domain M4S28_04230 PF04384 Iron-sulphur cluster assembly M4S28_04235 PF00883 Cytosol aminopeptidase family, catalytic domain M4S28_04235 PF12404 Peptidase M4S28_04240 PF00334 Nucleoside diphosphate kinase M4S28_04245 PF04055 Radical SAM superfamily M4S28_04250 PF13464 Domain of unknown function (DUF4115) M4S28_04255 PF04551 GcpE protein M4S28_04260 PF03129 Anticodon binding domain M4S28_04260 PF13393 Histidyl-tRNA synthetase M4S28_04265 PF09976 Tetratricopeptide repeat-like domain M4S28_04270 PF13360 PQQ-like domain M4S28_04275 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal M4S28_04275 PF01926 50S ribosome-binding GTPase M4S28_04280 PF02272 DHHA1 domain M4S28_04280 PF01411 tRNA synthetases class II (A) M4S28_04280 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M4S28_04285 PF00990 Diguanylate cyclase, GGDEF domain M4S28_04285 PF08448 PAS fold M4S28_04300 PF02653 Branched-chain amino acid transport system / permease component M4S28_04310 PF00005 ABC transporter M4S28_04310 PF12399 Branched-chain amino acid ATP-binding cassette transporter M4S28_04315 PF00005 ABC transporter M4S28_04320 PF01774 UreD urease accessory protein M4S28_04325 PF00547 Urease, gamma subunit M4S28_04330 PF00699 Urease beta subunit M4S28_04335 PF01979 Amidohydrolase family M4S28_04335 PF00449 Urease alpha-subunit, N-terminal domain M4S28_04340 PF05194 UreE urease accessory protein, C-terminal domain M4S28_04340 PF02814 UreE urease accessory protein, N-terminal domain M4S28_04350 PF01730 UreF M4S28_04355 PF02492 CobW/HypB/UreG, nucleotide-binding domain M4S28_04360 PF02601 Exonuclease VII, large subunit M4S28_04360 PF13742 OB-fold nucleic acid binding domain M4S28_04365 PF00571 CBS domain M4S28_04365 PF00478 IMP dehydrogenase / GMP reductase domain M4S28_04370 PF00958 GMP synthase C terminal domain M4S28_04370 PF00117 Glutamine amidotransferase class-I M4S28_04370 PF02540 NAD synthase M4S28_04375 PF00704 Glycosyl hydrolases family 18 M4S28_04375 PF06483 Chitinase C M4S28_04380 PF03553 Na+/H+ antiporter family M4S28_04385 PF01184 GPR1/FUN34/yaaH family M4S28_04390 PF01235 Sodium:alanine symporter family M4S28_04395 PF10996 Beta-Casp domain M4S28_04395 PF00753 Metallo-beta-lactamase superfamily M4S28_04395 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain M4S28_04400 PF01553 Acyltransferase M4S28_04425 PF08443 RimK-like ATP-grasp domain M4S28_04425 PF18030 RimK PreATP-grasp domain M4S28_04435 PF01668 SmpB protein M4S28_04440 PF03364 Polyketide cyclase / dehydrase and lipid transport M4S28_04445 PF03658 RnfH family Ubiquitin M4S28_04450 PF04355 SmpA / OmlA family M4S28_04455 PF02463 RecF/RecN/SMC N terminal domain M4S28_04460 PF01513 ATP-NAD kinase M4S28_04465 PF01025 GrpE M4S28_04470 PF00375 Sodium:dicarboxylate symporter family M4S28_04480 PF01609 Transposase DDE domain M4S28_04480 PF13006 Insertion element 4 transposase N-terminal M4S28_04485 PF00012 Hsp70 protein M4S28_04490 PF00684 DnaJ central domain M4S28_04490 PF01556 DnaJ C terminal domain M4S28_04490 PF00226 DnaJ domain M4S28_04495 PF07963 Prokaryotic N-terminal methylation motif M4S28_04495 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor M4S28_04520 PF03806 AbgT putative transporter family M4S28_04525 PF01595 Cyclin M transmembrane N-terminal domain M4S28_04525 PF03471 Transporter associated domain M4S28_04525 PF00571 CBS domain M4S28_04530 PF14437 MafB19-like deaminase M4S28_04535 PF00497 Bacterial extracellular solute-binding proteins, family 3 M4S28_04535 PF01464 Transglycosylase SLT domain M4S28_04540 PF02769 AIR synthase related protein, C-terminal domain M4S28_04540 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain M4S28_04540 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal M4S28_04550 PF14602 Hexapeptide repeat of succinyl-transferase M4S28_04550 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle M4S28_04555 PF02872 5'-nucleotidase, C-terminal domain M4S28_04555 PF00149 Calcineurin-like phosphoesterase M4S28_04560 PF01914 MarC family integral membrane protein M4S28_04575 PF07130 YebG protein M4S28_04580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_04580 PF03466 LysR substrate binding domain M4S28_04590 PF17946 RecC C-terminal domain M4S28_04600 PF12705 PD-(D/E)XK nuclease superfamily M4S28_04600 PF00580 UvrD/REP helicase N-terminal domain M4S28_04600 PF13361 UvrD-like helicase C-terminal domain M4S28_04605 PF13538 UvrD-like helicase C-terminal domain M4S28_04615 PF00583 Acetyltransferase (GNAT) family M4S28_04615 PF00696 Amino acid kinase family M4S28_04625 PF06725 3D domain M4S28_04625 PF03562 MltA specific insert domain M4S28_04630 PF00899 ThiF family M4S28_04635 PF02657 Fe-S metabolism associated domain M4S28_04640 PF00266 Aminotransferase class-V M4S28_04645 PF08546 Ketopantoate reductase PanE/ApbA C terminal M4S28_04645 PF02558 Ketopantoate reductase PanE/ApbA M4S28_04650 PF03502 Nucleoside-specific channel-forming protein, Tsx M4S28_04660 PF07690 Major Facilitator Superfamily M4S28_04665 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M4S28_04675 PF05175 Methyltransferase small domain M4S28_04680 PF01722 BolA-like protein M4S28_04685 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) M4S28_04685 PF11973 NQRA C-terminal domain M4S28_04690 PF03116 NQR2, RnfD, RnfE family M4S28_04695 PF04205 FMN-binding domain M4S28_04700 PF02508 Rnf-Nqr subunit, membrane protein M4S28_04705 PF02508 Rnf-Nqr subunit, membrane protein M4S28_04710 PF00175 Oxidoreductase NAD-binding domain M4S28_04710 PF00111 2Fe-2S iron-sulfur cluster binding domain M4S28_04710 PF00970 Oxidoreductase FAD-binding domain M4S28_04715 PF02424 ApbE family M4S28_04720 PF04400 (Na+)-NQR maturation NqrM M4S28_04725 PF00990 Diguanylate cyclase, GGDEF domain M4S28_04725 PF00072 Response regulator receiver domain M4S28_04730 PF00817 impB/mucB/samB family M4S28_04730 PF11799 impB/mucB/samB family C-terminal domain M4S28_04730 PF11798 IMS family HHH motif M4S28_04735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M4S28_04740 PF00270 DEAD/DEAH box helicase M4S28_04740 PF00271 Helicase conserved C-terminal domain M4S28_04740 PF00570 HRDC domain M4S28_04740 PF16124 RecQ zinc-binding M4S28_04740 PF09382 RQC domain M4S28_04755 PF00209 Sodium:neurotransmitter symporter family M4S28_04760 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family M4S28_04760 PF04055 Radical SAM superfamily M4S28_04765 PF03099 Biotin/lipoate A/B protein ligase family M4S28_04770 PF04359 Protein of unknown function (DUF493) M4S28_04775 PF00768 D-alanyl-D-alanine carboxypeptidase M4S28_04775 PF07943 Penicillin-binding protein 5, C-terminal domain M4S28_04780 PF03330 Lytic transglycolase M4S28_04780 PF05036 Sporulation related domain M4S28_04785 PF01098 Cell cycle protein M4S28_04790 PF03717 Penicillin-binding Protein dimerisation domain M4S28_04790 PF00905 Penicillin binding protein transpeptidase domain M4S28_04795 PF02590 Predicted SPOUT methyltransferase M4S28_04805 PF06144 DNA polymerase III, delta subunit M4S28_04805 PF14840 Processivity clamp loader gamma complex DNA pol III C-term M4S28_04810 PF04390 Lipopolysaccharide-assembly M4S28_04815 PF13603 Leucyl-tRNA synthetase, Domain 2 M4S28_04815 PF00133 tRNA synthetases class I (I, L, M and V) M4S28_04815 PF08264 Anticodon-binding domain of tRNA M4S28_04820 PF07295 Zinc-ribbon containing domain M4S28_04825 PF00795 Carbon-nitrogen hydrolase M4S28_04830 PF03471 Transporter associated domain M4S28_04830 PF00571 CBS domain M4S28_04835 PF02130 Uncharacterized protein family UPF0054 M4S28_04840 PF02562 PhoH-like protein M4S28_04845 PF00919 Uncharacterized protein family UPF0004 M4S28_04845 PF01938 TRAM domain M4S28_04845 PF04055 Radical SAM superfamily M4S28_04850 PF01494 FAD binding domain M4S28_04855 PF10282 Lactonase, 7-bladed beta-propeller M4S28_04955 PF06071 Protein of unknown function (DUF933) M4S28_04955 PF01926 50S ribosome-binding GTPase M4S28_04960 PF01195 Peptidyl-tRNA hydrolase M4S28_04965 PF14572 Phosphoribosyl synthetase-associated domain M4S28_04965 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase M4S28_04970 PF08544 GHMP kinases C terminal M4S28_04970 PF00288 GHMP kinases N terminal domain M4S28_04975 PF03550 Outer membrane lipoprotein LolB M4S28_04980 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain M4S28_04980 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain M4S28_04980 PF01488 Shikimate / quinate 5-dehydrogenase M4S28_04985 PF03462 PCRF domain M4S28_04985 PF00472 RF-1 domain M4S28_04990 PF13847 Methyltransferase domain M4S28_04990 PF17827 PrmC N-terminal domain M4S28_04995 PF04247 Invasion gene expression up-regulator, SirB M4S28_05000 PF13369 Transglutaminase-like superfamily M4S28_05005 PF00793 DAHP synthetase I family M4S28_05010 PF02872 5'-nucleotidase, C-terminal domain M4S28_05010 PF00149 Calcineurin-like phosphoesterase M4S28_05015 PF04073 Aminoacyl-tRNA editing domain M4S28_05020 PF01479 S4 domain M4S28_05020 PF00849 RNA pseudouridylate synthase M4S28_05025 PF01713 Smr domain M4S28_05050 PF03173 Putative carbohydrate binding domain M4S28_05050 PF00728 Glycosyl hydrolase family 20, catalytic domain M4S28_05050 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain M4S28_05050 PF02838 Glycosyl hydrolase family 20, domain 2 M4S28_05065 PF00403 Heavy-metal-associated domain M4S28_05070 PF00749 tRNA synthetases class I (E and Q), catalytic domain M4S28_05075 PF00109 Beta-ketoacyl synthase, N-terminal domain M4S28_05075 PF02801 Beta-ketoacyl synthase, C-terminal domain M4S28_05090 PF00109 Beta-ketoacyl synthase, N-terminal domain M4S28_05090 PF02801 Beta-ketoacyl synthase, C-terminal domain M4S28_05115 PF00221 Aromatic amino acid lyase M4S28_05120 PF00535 Glycosyl transferase family 2 M4S28_05130 PF13193 AMP-binding enzyme C-terminal domain M4S28_05130 PF00501 AMP-binding enzyme M4S28_05140 PF00550 Phosphopantetheine attachment site M4S28_05145 PF00550 Phosphopantetheine attachment site M4S28_05170 PF04820 Tryptophan halogenase M4S28_05205 PF13144 Chaperone for flagella basal body P-ring formation M4S28_05210 PF00072 Response regulator receiver domain M4S28_05210 PF01584 CheW-like domain M4S28_05215 PF01739 CheR methyltransferase, SAM binding domain M4S28_05215 PF03705 CheR methyltransferase, all-alpha domain M4S28_05220 PF00460 Flagella basal body rod protein M4S28_05225 PF00460 Flagella basal body rod protein M4S28_05225 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M4S28_05230 PF03963 Flagellar hook capping protein - N-terminal region M4S28_05230 PF13860 FlgD Ig-like domain M4S28_05230 PF13861 FlgD Tudor-like domain M4S28_05235 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M4S28_05235 PF00460 Flagella basal body rod protein M4S28_05235 PF07559 Flagellar basal body protein FlaE M4S28_05240 PF00460 Flagella basal body rod protein M4S28_05240 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M4S28_05245 PF00460 Flagella basal body rod protein M4S28_05245 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M4S28_05250 PF02107 Flagellar L-ring protein M4S28_05255 PF02119 Flagellar P-ring protein M4S28_05260 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase M4S28_05260 PF10135 Rod binding protein M4S28_05265 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M4S28_05265 PF07196 Flagellin hook IN motif M4S28_05275 PF00700 Bacterial flagellin C-terminal helical region M4S28_05275 PF07196 Flagellin hook IN motif M4S28_05275 PF00669 Bacterial flagellin N-terminal helical region M4S28_05285 PF00700 Bacterial flagellin C-terminal helical region M4S28_05285 PF00669 Bacterial flagellin N-terminal helical region M4S28_05285 PF07196 Flagellin hook IN motif M4S28_05290 PF00700 Bacterial flagellin C-terminal helical region M4S28_05290 PF07196 Flagellin hook IN motif M4S28_05290 PF00669 Bacterial flagellin N-terminal helical region M4S28_05295 PF03646 FlaG protein M4S28_05300 PF02465 Flagellar hook-associated protein 2 N-terminus M4S28_05300 PF07195 Flagellar hook-associated protein 2 C-terminus M4S28_05300 PF07196 Flagellin hook IN motif M4S28_05310 PF02561 Flagellar protein FliS M4S28_05315 PF06490 Flagellar regulatory protein FleQ M4S28_05315 PF02954 Bacterial regulatory protein, Fis family M4S28_05315 PF00158 Sigma-54 interaction domain M4S28_05320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_05320 PF00512 His Kinase A (phospho-acceptor) domain M4S28_05320 PF13188 PAS domain M4S28_05325 PF02954 Bacterial regulatory protein, Fis family M4S28_05325 PF00072 Response regulator receiver domain M4S28_05325 PF00158 Sigma-54 interaction domain M4S28_05330 PF02049 Flagellar hook-basal body complex protein FliE M4S28_05335 PF08345 Flagellar M-ring protein C-terminal M4S28_05335 PF01514 Secretory protein of YscJ/FliF family M4S28_05340 PF01706 FliG C-terminal domain M4S28_05340 PF14841 FliG middle domain M4S28_05340 PF14842 FliG N-terminal domain M4S28_05350 PF18269 T3SS EscN ATPase C-terminal domain M4S28_05350 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M4S28_05370 PF02154 Flagellar motor switch protein FliM M4S28_05370 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M4S28_05375 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M4S28_05380 PF04347 Flagellar biosynthesis protein, FliO M4S28_05385 PF00813 FliP family M4S28_05390 PF01313 Bacterial export proteins, family 3 M4S28_05395 PF01311 Bacterial export proteins, family 1 M4S28_05400 PF01312 FlhB HrpN YscU SpaS Family M4S28_05405 PF00771 FHIPEP family M4S28_05410 PF00448 SRP54-type protein, GTPase domain M4S28_05415 PF10609 NUBPL iron-transfer P-loop NTPase M4S28_05420 PF04545 Sigma-70, region 4 M4S28_05420 PF04539 Sigma-70 region 3 M4S28_05420 PF04542 Sigma-70 region 2 M4S28_05425 PF00072 Response regulator receiver domain M4S28_05430 PF04344 Chemotaxis phosphatase, CheZ M4S28_05435 PF01584 CheW-like domain M4S28_05435 PF00072 Response regulator receiver domain M4S28_05435 PF01627 Hpt domain M4S28_05435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_05435 PF02895 Signal transducing histidine kinase, homodimeric domain M4S28_05440 PF00072 Response regulator receiver domain M4S28_05440 PF01339 CheB methylesterase M4S28_05445 PF13614 AAA domain M4S28_05455 PF01584 CheW-like domain M4S28_05465 PF00005 ABC transporter M4S28_05470 PF03379 CcmB protein M4S28_05475 PF01578 Cytochrome C assembly protein M4S28_05480 PF04995 Heme exporter protein D (CcmD) M4S28_05485 PF03100 CcmE M4S28_05490 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal M4S28_05490 PF01578 Cytochrome C assembly protein M4S28_05495 PF08534 Redoxin M4S28_05500 PF03918 Cytochrome C biogenesis protein M4S28_05505 PF03918 Cytochrome C biogenesis protein M4S28_05510 PF04333 MlaA lipoprotein M4S28_05515 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) M4S28_05520 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) M4S28_05530 PF04542 Sigma-70 region 2 M4S28_05530 PF08281 Sigma-70, region 4 M4S28_05535 PF00108 Thiolase, N-terminal domain M4S28_05535 PF02803 Thiolase, C-terminal domain M4S28_05540 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M4S28_05540 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M4S28_05540 PF00378 Enoyl-CoA hydratase/isomerase M4S28_05545 PF16187 Middle or third domain of peptidase_M16 M4S28_05545 PF00675 Insulinase (Peptidase family M16) M4S28_05545 PF05193 Peptidase M16 inactive domain M4S28_05550 PF00300 Histidine phosphatase superfamily (branch 1) M4S28_05555 PF01713 Smr domain M4S28_05560 PF05175 Methyltransferase small domain M4S28_05565 PF01810 LysE type translocator M4S28_05570 PF02696 Uncharacterized ACR, YdiU/UPF0061 family M4S28_05575 PF00486 Transcriptional regulatory protein, C terminal M4S28_05575 PF00072 Response regulator receiver domain M4S28_05580 PF00672 HAMP domain M4S28_05580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_05580 PF00512 His Kinase A (phospho-acceptor) domain M4S28_05585 PF01547 Bacterial extracellular solute-binding protein M4S28_05590 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_05595 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_05600 PF00005 ABC transporter M4S28_05600 PF17912 MalK OB fold domain M4S28_05600 PF03459 TOBE domain M4S28_05610 PF16360 GTP-binding GTPase Middle Region M4S28_05610 PF13167 GTP-binding GTPase N-terminal M4S28_05610 PF01926 50S ribosome-binding GTPase M4S28_05615 PF00698 Acyl transferase domain M4S28_05615 PF03060 Nitronate monooxygenase M4S28_05620 PF00550 Phosphopantetheine attachment site M4S28_05620 PF08659 KR domain M4S28_05620 PF02801 Beta-ketoacyl synthase, C-terminal domain M4S28_05620 PF00109 Beta-ketoacyl synthase, N-terminal domain M4S28_05620 PF16197 Ketoacyl-synthetase C-terminal extension M4S28_05620 PF00698 Acyl transferase domain M4S28_05620 PF14765 Polyketide synthase dehydratase M4S28_05630 PF02801 Beta-ketoacyl synthase, C-terminal domain M4S28_05630 PF00109 Beta-ketoacyl synthase, N-terminal domain M4S28_05630 PF08659 KR domain M4S28_05630 PF16197 Ketoacyl-synthetase C-terminal extension M4S28_05630 PF14765 Polyketide synthase dehydratase M4S28_05630 PF00550 Phosphopantetheine attachment site M4S28_05630 PF00698 Acyl transferase domain M4S28_05635 PF01648 4'-phosphopantetheinyl transferase superfamily M4S28_05645 PF03480 Bacterial extracellular solute-binding protein, family 7 M4S28_05650 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component M4S28_05655 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component M4S28_05665 PF02954 Bacterial regulatory protein, Fis family M4S28_05665 PF00158 Sigma-54 interaction domain M4S28_05665 PF00072 Response regulator receiver domain M4S28_05670 PF02743 Cache domain M4S28_05670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_05670 PF00512 His Kinase A (phospho-acceptor) domain M4S28_05675 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M4S28_05675 PF05698 Bacterial trigger factor protein (TF) C-terminus M4S28_05675 PF05697 Bacterial trigger factor protein (TF) M4S28_05680 PF00574 Clp protease M4S28_05685 PF06689 ClpX C4-type zinc finger M4S28_05685 PF10431 C-terminal, D2-small domain, of ClpB protein M4S28_05685 PF07724 AAA domain (Cdc48 subfamily) M4S28_05690 PF00004 ATPase family associated with various cellular activities (AAA) M4S28_05690 PF05362 Lon protease (S16) C-terminal proteolytic domain M4S28_05690 PF02190 ATP-dependent protease La (LON) substrate-binding domain M4S28_05695 PF00216 Bacterial DNA-binding protein M4S28_05700 PF13145 PPIC-type PPIASE domain M4S28_05720 PF01966 HD domain M4S28_05720 PF13286 Phosphohydrolase-associated domain M4S28_05730 PF00155 Aminotransferase class I and II M4S28_05735 PF00425 chorismate binding enzyme M4S28_05740 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M4S28_05740 PF16582 Middle domain of thiamine pyrophosphate M4S28_05740 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M4S28_05745 PF00561 alpha/beta hydrolase fold M4S28_05750 PF00378 Enoyl-CoA hydratase/isomerase M4S28_05755 PF13378 Enolase C-terminal domain-like M4S28_05760 PF00501 AMP-binding enzyme M4S28_05760 PF13193 AMP-binding enzyme C-terminal domain M4S28_05770 PF03601 Conserved hypothetical protein 698 M4S28_05775 PF07690 Major Facilitator Superfamily M4S28_05830 PF13533 Biotin-lipoyl like M4S28_05835 PF00873 AcrB/AcrD/AcrF family M4S28_05845 PF00291 Pyridoxal-phosphate dependent enzyme M4S28_05850 PF01037 Lrp/AsnC ligand binding domain M4S28_05850 PF13404 AsnC-type helix-turn-helix domain M4S28_05865 PF09619 Type III secretion system lipoprotein chaperone (YscW) M4S28_05870 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M4S28_05885 PF02805 Metal binding domain of Ada M4S28_05885 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M4S28_05885 PF12833 Helix-turn-helix domain M4S28_05885 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M4S28_05915 PF05656 Protein of unknown function (DUF805) M4S28_05925 PF01693 Caulimovirus viroplasmin M4S28_05930 PF13439 Glycosyltransferase Family 4 M4S28_05930 PF00534 Glycosyl transferases group 1 M4S28_05935 PF00535 Glycosyl transferase family 2 M4S28_05970 PF00255 Glutathione peroxidase M4S28_05975 PF03109 ABC1 family M4S28_05990 PF00158 Sigma-54 interaction domain M4S28_05990 PF00072 Response regulator receiver domain M4S28_05990 PF02954 Bacterial regulatory protein, Fis family M4S28_06000 PF01645 Conserved region in glutamate synthase M4S28_06010 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M4S28_06010 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M4S28_06010 PF00378 Enoyl-CoA hydratase/isomerase M4S28_06015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_06015 PF03466 LysR substrate binding domain M4S28_06020 PF00376 MerR family regulatory protein M4S28_06020 PF09278 MerR, DNA binding M4S28_06025 PF04794 YdjC-like protein M4S28_06030 PF02056 Family 4 glycosyl hydrolase M4S28_06030 PF11975 Family 4 glycosyl hydrolase C-terminal domain M4S28_06035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_06035 PF03466 LysR substrate binding domain M4S28_06060 PF00884 Sulfatase M4S28_06065 PF00356 Bacterial regulatory proteins, lacI family M4S28_06080 PF07690 Major Facilitator Superfamily M4S28_06085 PF00474 Sodium:solute symporter family M4S28_06090 PF03313 Serine dehydratase alpha chain M4S28_06090 PF03315 Serine dehydratase beta chain M4S28_06095 PF01037 Lrp/AsnC ligand binding domain M4S28_06100 PF01810 LysE type translocator M4S28_06105 PF07992 Pyridine nucleotide-disulphide oxidoreductase M4S28_06105 PF13192 Thioredoxin domain M4S28_06110 PF00578 AhpC/TSA family M4S28_06110 PF10417 C-terminal domain of 1-Cys peroxiredoxin M4S28_06120 PF00860 Permease family M4S28_06125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_06125 PF03466 LysR substrate binding domain M4S28_06135 PF03330 Lytic transglycolase M4S28_06135 PF05036 Sporulation related domain M4S28_06150 PF01368 DHH family M4S28_06150 PF02833 DHHA2 domain M4S28_06165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_06165 PF03466 LysR substrate binding domain M4S28_06190 PF07992 Pyridine nucleotide-disulphide oxidoreductase M4S28_06190 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M4S28_06195 PF00375 Sodium:dicarboxylate symporter family M4S28_06200 PF13382 Adenine deaminase C-terminal domain M4S28_06200 PF01979 Amidohydrolase family M4S28_06215 PF01979 Amidohydrolase family M4S28_06225 PF02311 AraC-like ligand binding domain M4S28_06225 PF12833 Helix-turn-helix domain M4S28_06230 PF08212 Lipocalin-like domain M4S28_06245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_06245 PF03466 LysR substrate binding domain M4S28_06250 PF17932 Tetracyclin repressor-like, C-terminal domain M4S28_06250 PF00440 Bacterial regulatory proteins, tetR family M4S28_06260 PF00873 AcrB/AcrD/AcrF family M4S28_06265 PF00116 Cytochrome C oxidase subunit II, periplasmic domain M4S28_06265 PF06481 COX Aromatic Rich Motif M4S28_06270 PF00115 Cytochrome C and Quinol oxidase polypeptide I M4S28_06275 PF00510 Cytochrome c oxidase subunit III M4S28_06280 PF03626 Prokaryotic Cytochrome C oxidase subunit IV M4S28_06285 PF01040 UbiA prenyltransferase family M4S28_06295 PF14863 Alkyl sulfatase dimerisation M4S28_06295 PF00753 Metallo-beta-lactamase superfamily M4S28_06295 PF14864 Alkyl sulfatase C-terminal M4S28_06310 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) M4S28_06315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_06315 PF03466 LysR substrate binding domain M4S28_06320 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M4S28_06325 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M4S28_06340 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M4S28_06345 PF01323 DSBA-like thioredoxin domain M4S28_06360 PF00591 Glycosyl transferase family, a/b domain M4S28_06360 PF02885 Glycosyl transferase family, helical bundle domain M4S28_06375 PF00571 CBS domain M4S28_06375 PF01743 Poly A polymerase head domain M4S28_06380 PF01554 MatE M4S28_06385 PF00403 Heavy-metal-associated domain M4S28_06390 PF01048 Phosphorylase superfamily M4S28_06400 PF00672 HAMP domain M4S28_06400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M4S28_06405 PF01230 HIT domain M4S28_06420 PF08139 Prokaryotic membrane lipoprotein lipid attachment site M4S28_06420 PF13036 Peptidoglycan-synthase activator LpoB M4S28_06430 PF05728 Uncharacterised protein family (UPF0227) M4S28_06435 PF07992 Pyridine nucleotide-disulphide oxidoreductase M4S28_06450 PF00271 Helicase conserved C-terminal domain M4S28_06450 PF17757 UvrB interaction domain M4S28_06450 PF03461 TRCF domain M4S28_06450 PF02559 CarD-like/TRCF domain M4S28_06450 PF00270 DEAD/DEAH box helicase M4S28_06460 PF02687 FtsX-like permease family M4S28_06460 PF12704 MacB-like periplasmic core domain M4S28_06465 PF00005 ABC transporter M4S28_06470 PF12704 MacB-like periplasmic core domain M4S28_06470 PF02687 FtsX-like permease family M4S28_06480 PF03772 Competence protein M4S28_06480 PF00753 Metallo-beta-lactamase superfamily M4S28_06485 PF00664 ABC transporter transmembrane region M4S28_06485 PF00005 ABC transporter M4S28_06490 PF02606 Tetraacyldisaccharide-1-P 4'-kinase M4S28_06495 PF03966 Trm112p-like protein M4S28_06500 PF02348 Cytidylyltransferase M4S28_06505 PF02224 Cytidylate kinase M4S28_06510 PF00575 S1 RNA binding domain M4S28_06515 PF00216 Bacterial DNA-binding protein M4S28_06520 PF06305 Lipopolysaccharide assembly protein A domain M4S28_06525 PF18073 Rubredoxin metal binding domain M4S28_06530 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family M4S28_06535 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) M4S28_06545 PF03466 LysR substrate binding domain M4S28_06545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_06555 PF01262 Alanine dehydrogenase/PNT, C-terminal domain M4S28_06555 PF05222 Alanine dehydrogenase/PNT, N-terminal domain M4S28_06560 PF01037 Lrp/AsnC ligand binding domain M4S28_06565 PF13491 4TM region of DNA translocase FtsK/SpoIIIE M4S28_06565 PF01580 FtsK/SpoIIIE family M4S28_06565 PF09397 Ftsk gamma domain M4S28_06565 PF17854 FtsK alpha domain M4S28_06570 PF03548 Outer membrane lipoprotein carrier protein LolA M4S28_06575 PF00004 ATPase family associated with various cellular activities (AAA) M4S28_06575 PF16193 AAA C-terminal domain M4S28_06575 PF12002 MgsA AAA+ ATPase C terminal M4S28_06580 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M4S28_06580 PF02403 Seryl-tRNA synthetase N-terminal domain M4S28_06585 PF01258 Prokaryotic dksA/traR C4-type zinc finger M4S28_06590 PF00202 Aminotransferase class-III M4S28_06595 PF06968 Biotin and Thiamin Synthesis associated domain M4S28_06595 PF04055 Radical SAM superfamily M4S28_06600 PF00155 Aminotransferase class I and II M4S28_06605 PF08241 Methyltransferase domain M4S28_06620 PF01435 Peptidase family M48 M4S28_06625 PF08328 Adenylosuccinate lyase C-terminal M4S28_06625 PF00206 Lyase M4S28_06630 PF04356 Protein of unknown function (DUF489) M4S28_06645 PF00294 pfkB family carbohydrate kinase M4S28_06650 PF00816 H-NS histone family M4S28_06655 PF03553 Na+/H+ antiporter family M4S28_06660 PF01634 ATP phosphoribosyltransferase M4S28_06660 PF08029 HisG, C-terminal domain M4S28_06665 PF00815 Histidinol dehydrogenase M4S28_06670 PF00155 Aminotransferase class I and II M4S28_06675 PF08645 Polynucleotide kinase 3 phosphatase M4S28_06675 PF00475 Imidazoleglycerol-phosphate dehydratase M4S28_06680 PF00117 Glutamine amidotransferase class-I M4S28_06685 PF00977 Histidine biosynthesis protein M4S28_06690 PF00977 Histidine biosynthesis protein M4S28_06695 PF01502 Phosphoribosyl-AMP cyclohydrolase M4S28_06695 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase M4S28_06700 PF02810 SEC-C motif M4S28_06705 PF08668 HDOD domain M4S28_06705 PF00563 EAL domain M4S28_06710 PF00149 Calcineurin-like phosphoesterase M4S28_06715 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M4S28_06720 PF01406 tRNA synthetases class I (C) catalytic domain M4S28_06720 PF09190 DALR domain M4S28_06725 PF00265 Thymidine kinase M4S28_06750 PF01226 Formate/nitrite transporter M4S28_06760 PF00665 Integrase core domain M4S28_06765 PF11426 Tn7 transposition regulator TnsC M4S28_06765 PF13401 AAA domain M4S28_06785 PF02384 N-6 DNA Methylase M4S28_06785 PF12161 HsdM N-terminal domain M4S28_06790 PF01420 Type I restriction modification DNA specificity domain M4S28_06800 PF18766 SWI2/SNF2 ATPase M4S28_06800 PF11867 Domain of unknown function (DUF3387) M4S28_06800 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) M4S28_06815 PF03649 Uncharacterised protein family (UPF0014) M4S28_06820 PF06796 Periplasmic nitrate reductase protein NapE M4S28_06825 PF03264 NapC/NirT cytochrome c family, N-terminal region M4S28_06830 PF01568 Molydopterin dinucleotide binding domain M4S28_06830 PF18364 Molybdopterin oxidoreductase N-terminal domain M4S28_06830 PF00384 Molybdopterin oxidoreductase M4S28_06840 PF02833 DHHA2 domain M4S28_06840 PF01368 DHH family M4S28_06855 PF00005 ABC transporter M4S28_06860 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M4S28_06860 PF00005 ABC transporter M4S28_06865 PF12911 N-terminal TM domain of oligopeptide transport permease C M4S28_06865 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_06870 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_06875 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M4S28_06880 PF02954 Bacterial regulatory protein, Fis family M4S28_06880 PF00158 Sigma-54 interaction domain M4S28_06885 PF04012 PspA/IM30 family M4S28_06890 PF06667 Phage shock protein B M4S28_06895 PF04024 PspC domain M4S28_06900 PF00529 HlyD membrane-fusion protein of T1SS M4S28_06900 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M4S28_06905 PF13533 Biotin-lipoyl like M4S28_06910 PF00873 AcrB/AcrD/AcrF family M4S28_06915 PF03352 Methyladenine glycosylase M4S28_06930 PF01053 Cys/Met metabolism PLP-dependent enzyme M4S28_06935 PF13091 PLD-like domain M4S28_06935 PF13396 Phospholipase_D-nuclease N-terminal M4S28_06940 PF00209 Sodium:neurotransmitter symporter family M4S28_06945 PF12729 Four helix bundle sensory module for signal transduction M4S28_06945 PF00672 HAMP domain M4S28_06945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M4S28_06950 PF00849 RNA pseudouridylate synthase M4S28_06955 PF10672 S-adenosylmethionine-dependent methyltransferase M4S28_06955 PF02926 THUMP domain M4S28_06955 PF01170 Putative RNA methylase family UPF0020 M4S28_06960 PF01066 CDP-alcohol phosphatidyltransferase M4S28_06965 PF00005 ABC transporter M4S28_06970 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_06975 PF13416 Bacterial extracellular solute-binding protein M4S28_06985 PF06945 Protein of unknown function (DUF1289) M4S28_07005 PF00270 DEAD/DEAH box helicase M4S28_07005 PF00271 Helicase conserved C-terminal domain M4S28_07010 PF01810 LysE type translocator M4S28_07020 PF18027 Cytosolic carboxypeptidase N-terminal domain M4S28_07020 PF00246 Zinc carboxypeptidase M4S28_07040 PF00005 ABC transporter M4S28_07040 PF00571 CBS domain M4S28_07045 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_07050 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M4S28_07060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_07060 PF03466 LysR substrate binding domain M4S28_07065 PF04403 Paraquat-inducible protein A M4S28_07070 PF02470 MlaD protein M4S28_07095 PF00691 OmpA family M4S28_07130 PF13302 Acetyltransferase (GNAT) domain M4S28_07140 PF04055 Radical SAM superfamily M4S28_07140 PF13186 Iron-sulfur cluster-binding domain M4S28_07145 PF14310 Fibronectin type III-like domain M4S28_07145 PF00933 Glycosyl hydrolase family 3 N terminal domain M4S28_07145 PF01915 Glycosyl hydrolase family 3 C-terminal domain M4S28_07150 PF00884 Sulfatase M4S28_07150 PF16347 Domain of unknown function (DUF4976) M4S28_07210 PF07885 Ion channel M4S28_07215 PF01548 Transposase M4S28_07215 PF02371 Transposase IS116/IS110/IS902 family M4S28_07310 PF01386 Ribosomal L25p family M4S28_07315 PF00535 Glycosyl transferase family 2 M4S28_07315 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 M4S28_07320 PF09335 SNARE associated Golgi protein M4S28_07330 PF00672 HAMP domain M4S28_07330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_07330 PF00512 His Kinase A (phospho-acceptor) domain M4S28_07335 PF00072 Response regulator receiver domain M4S28_07335 PF00486 Transcriptional regulatory protein, C terminal M4S28_07345 PF00271 Helicase conserved C-terminal domain M4S28_07345 PF04851 Type III restriction enzyme, res subunit M4S28_07350 PF00849 RNA pseudouridylate synthase M4S28_07350 PF01479 S4 domain M4S28_07355 PF07690 Major Facilitator Superfamily M4S28_07365 PF11066 Protein of unknown function (DUF2867) M4S28_07365 PF13460 NAD(P)H-binding M4S28_07370 PF01554 MatE M4S28_07375 PF00005 ABC transporter M4S28_07390 PF06965 Na+/H+ antiporter 1 M4S28_07410 PF16295 Tetracyclin repressor-like, C-terminal domain M4S28_07410 PF00440 Bacterial regulatory proteins, tetR family M4S28_07415 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M4S28_07415 PF02770 Acyl-CoA dehydrogenase, middle domain M4S28_07415 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M4S28_07415 PF09317 Domain of unknown function (DUF1974) M4S28_07420 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase M4S28_07420 PF07055 Enoyl reductase FAD binding domain M4S28_07420 PF12241 Trans-2-enoyl-CoA reductase catalytic region M4S28_07425 PF06826 Predicted Permease Membrane Region M4S28_07425 PF02080 TrkA-C domain M4S28_07430 PF00462 Glutaredoxin M4S28_07435 PF00465 Iron-containing alcohol dehydrogenase M4S28_07440 PF01418 Helix-turn-helix domain, rpiR family M4S28_07440 PF01380 SIS domain M4S28_07445 PF00282 Pyridoxal-dependent decarboxylase conserved domain M4S28_07455 PF03956 Lysine exporter LysO M4S28_07465 PF04994 TfoX C-terminal domain M4S28_07465 PF04993 TfoX N-terminal domain M4S28_07475 PF00072 Response regulator receiver domain M4S28_07475 PF00158 Sigma-54 interaction domain M4S28_07475 PF02954 Bacterial regulatory protein, Fis family M4S28_07480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_07480 PF00512 His Kinase A (phospho-acceptor) domain M4S28_07480 PF00989 PAS fold M4S28_07490 PF00266 Aminotransferase class-V M4S28_07500 PF03475 3-alpha domain M4S28_07500 PF03473 MOSC domain M4S28_07505 PF00929 Exonuclease M4S28_07505 PF07733 Bacterial DNA polymerase III alpha NTPase domain M4S28_07505 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M4S28_07505 PF14579 Helix-hairpin-helix motif M4S28_07505 PF02811 PHP domain M4S28_07520 PF00155 Aminotransferase class I and II M4S28_07525 PF00672 HAMP domain M4S28_07525 PF01966 HD domain M4S28_07535 PF00155 Aminotransferase class I and II M4S28_07535 PF00392 Bacterial regulatory proteins, gntR family M4S28_07555 PF01336 OB-fold nucleic acid binding domain M4S28_07555 PF00152 tRNA synthetases class II (D, K and N) M4S28_07560 PF00916 Sulfate permease family M4S28_07560 PF01740 STAS domain M4S28_07565 PF02743 Cache domain M4S28_07565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M4S28_07565 PF00672 HAMP domain M4S28_07570 PF00384 Molybdopterin oxidoreductase M4S28_07570 PF01568 Molydopterin dinucleotide binding domain M4S28_07575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_07575 PF03466 LysR substrate binding domain M4S28_07580 PF02634 FdhD/NarQ family M4S28_07590 PF03222 Tryptophan/tyrosine permease family M4S28_07595 PF03315 Serine dehydratase beta chain M4S28_07595 PF03313 Serine dehydratase alpha chain M4S28_07600 PF03222 Tryptophan/tyrosine permease family M4S28_07605 PF00293 NUDIX domain M4S28_07615 PF00072 Response regulator receiver domain M4S28_07615 PF09308 LuxQ, periplasmic M4S28_07615 PF00512 His Kinase A (phospho-acceptor) domain M4S28_07615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_07620 PF00425 chorismate binding enzyme M4S28_07620 PF04715 Anthranilate synthase component I, N terminal region M4S28_07635 PF04317 YcjX-like family, DUF463 M4S28_07640 PF05128 Domain of unknown function (DUF697) M4S28_07645 PF00158 Sigma-54 interaction domain M4S28_07645 PF18024 Helix-turn-helix domain M4S28_07650 PF13302 Acetyltransferase (GNAT) domain M4S28_07665 PF00012 Hsp70 protein M4S28_07670 PF00012 Hsp70 protein M4S28_07680 PF00990 Diguanylate cyclase, GGDEF domain M4S28_07700 PF00486 Transcriptional regulatory protein, C terminal M4S28_07730 PF00270 DEAD/DEAH box helicase M4S28_07730 PF11898 Domain of unknown function (DUF3418) M4S28_07730 PF04408 Helicase associated domain (HA2) M4S28_07730 PF00271 Helicase conserved C-terminal domain M4S28_07730 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold M4S28_07770 PF00990 Diguanylate cyclase, GGDEF domain M4S28_07770 PF00072 Response regulator receiver domain M4S28_07775 PF01409 tRNA synthetases class II core domain (F) M4S28_07775 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain M4S28_07780 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain M4S28_07780 PF03147 Ferredoxin-fold anticodon binding domain M4S28_07780 PF03484 tRNA synthetase B5 domain M4S28_07780 PF01588 Putative tRNA binding domain M4S28_07780 PF03483 B3/4 domain M4S28_07845 PF01734 Patatin-like phospholipase M4S28_07860 PF01227 GTP cyclohydrolase I M4S28_07865 PF02152 Dihydroneopterin aldolase M4S28_07870 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) M4S28_07875 PF04231 Endonuclease I M4S28_07890 PF03180 NLPA lipoprotein M4S28_07895 PF01738 Dienelactone hydrolase family M4S28_07925 PF01037 Lrp/AsnC ligand binding domain M4S28_07930 PF01053 Cys/Met metabolism PLP-dependent enzyme M4S28_07940 PF00892 EamA-like transporter family M4S28_07950 PF03466 LysR substrate binding domain M4S28_07950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_07965 PF01039 Carboxyl transferase domain M4S28_07965 PF17848 Acetyl-coA carboxylase zinc finger domain M4S28_07970 PF03466 LysR substrate binding domain M4S28_07970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_07995 PF01156 Inosine-uridine preferring nucleoside hydrolase M4S28_08000 PF12805 FUSC-like inner membrane protein yccS M4S28_08015 PF03824 High-affinity nickel-transport protein M4S28_08030 PF00072 Response regulator receiver domain M4S28_08030 PF00486 Transcriptional regulatory protein, C terminal M4S28_08035 PF00512 His Kinase A (phospho-acceptor) domain M4S28_08035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_08035 PF07689 KaiB domain M4S28_08050 PF02001 Protein of unknown function DUF134 M4S28_08070 PF04973 Nicotinamide mononucleotide transporter M4S28_08075 PF01048 Phosphorylase superfamily M4S28_08100 PF00216 Bacterial DNA-binding protein M4S28_08105 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M4S28_08105 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M4S28_08105 PF00205 Thiamine pyrophosphate enzyme, central domain M4S28_08165 PF00672 HAMP domain M4S28_08165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M4S28_08165 PF17200 Single Cache domain 2 M4S28_08175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_08175 PF03466 LysR substrate binding domain M4S28_08185 PF02668 Taurine catabolism dioxygenase TauD, TfdA family M4S28_08190 PF00072 Response regulator receiver domain M4S28_08190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_08195 PF00155 Aminotransferase class I and II M4S28_08200 PF00392 Bacterial regulatory proteins, gntR family M4S28_08200 PF00155 Aminotransferase class I and II M4S28_08215 PF07683 Cobalamin synthesis protein cobW C-terminal domain M4S28_08215 PF02492 CobW/HypB/UreG, nucleotide-binding domain M4S28_08220 PF00132 Bacterial transferase hexapeptide (six repeats) M4S28_08230 PF00216 Bacterial DNA-binding protein M4S28_08250 PF00034 Cytochrome c M4S28_08260 PF05724 Thiopurine S-methyltransferase (TPMT) M4S28_08265 PF02222 ATP-grasp domain M4S28_08270 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M4S28_08270 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region M4S28_08275 PF04172 LrgB-like family M4S28_08280 PF03788 LrgA family M4S28_08285 PF00929 Exonuclease M4S28_08285 PF08411 Exonuclease C-terminal M4S28_08310 PF04116 Fatty acid hydroxylase superfamily M4S28_08330 PF03372 Endonuclease/Exonuclease/phosphatase family M4S28_08335 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) M4S28_08355 PF01117 Aerolysin toxin M4S28_08355 PF03440 Aerolysin/Pertussis toxin (APT) domain M4S28_08365 PF03466 LysR substrate binding domain M4S28_08365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_08370 PF00248 Aldo/keto reductase family M4S28_08375 PF03928 Haem-degrading M4S28_08380 PF00375 Sodium:dicarboxylate symporter family M4S28_08385 PF13460 NAD(P)H-binding M4S28_08390 PF07963 Prokaryotic N-terminal methylation motif M4S28_08395 PF01613 Flavin reductase like domain M4S28_08400 PF02277 Phosphoribosyltransferase M4S28_08405 PF02654 Cobalamin-5-phosphate synthase M4S28_08410 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase M4S28_08425 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family M4S28_08430 PF01032 FecCD transport family M4S28_08435 PF00005 ABC transporter M4S28_08445 PF03466 LysR substrate binding domain M4S28_08445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_08465 PF00155 Aminotransferase class I and II M4S28_08465 PF00392 Bacterial regulatory proteins, gntR family M4S28_08470 PF01654 Cytochrome bd terminal oxidase subunit I M4S28_08475 PF02322 Cytochrome bd terminal oxidase subunit II M4S28_08495 PF03466 LysR substrate binding domain M4S28_08495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_08520 PF00583 Acetyltransferase (GNAT) family M4S28_08530 PF00990 Diguanylate cyclase, GGDEF domain M4S28_08540 PF07690 Major Facilitator Superfamily M4S28_08545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_08545 PF03466 LysR substrate binding domain M4S28_08555 PF01863 Protein of unknown function DUF45 M4S28_08560 PF05971 RNA methyltransferase M4S28_08570 PF04204 Homoserine O-succinyltransferase M4S28_08585 PF07687 Peptidase dimerisation domain M4S28_08585 PF01546 Peptidase family M20/M25/M40 M4S28_08590 PF00990 Diguanylate cyclase, GGDEF domain M4S28_08590 PF05230 MASE2 domain M4S28_08610 PF13356 Arm DNA-binding domain M4S28_08610 PF00589 Phage integrase family M4S28_08625 PF13148 Protein of unknown function (DUF3987) M4S28_08660 PF04002 RadC-like JAB domain M4S28_08695 PF00271 Helicase conserved C-terminal domain M4S28_08695 PF00270 DEAD/DEAH box helicase M4S28_08695 PF00570 HRDC domain M4S28_08695 PF16124 RecQ zinc-binding M4S28_08695 PF09382 RQC domain M4S28_08705 PF01966 HD domain M4S28_08705 PF13286 Phosphohydrolase-associated domain M4S28_08725 PF01695 IstB-like ATP binding protein M4S28_08730 PF00665 Integrase core domain M4S28_08740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_08740 PF03466 LysR substrate binding domain M4S28_08760 PF00263 Bacterial type II and III secretion system protein M4S28_08760 PF13629 Pilus formation protein N terminal region M4S28_08760 PF04972 BON domain M4S28_08770 PF10609 NUBPL iron-transfer P-loop NTPase M4S28_08775 PF00437 Type II/IV secretion system protein M4S28_08810 PF00691 OmpA family M4S28_08810 PF04972 BON domain M4S28_08815 PF00563 EAL domain M4S28_08815 PF00990 Diguanylate cyclase, GGDEF domain M4S28_08815 PF08448 PAS fold M4S28_08820 PF00709 Adenylosuccinate synthetase M4S28_08825 PF03466 LysR substrate binding domain M4S28_08825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_08840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M4S28_08840 PF12729 Four helix bundle sensory module for signal transduction M4S28_08840 PF00672 HAMP domain M4S28_08855 PF00704 Glycosyl hydrolases family 18 M4S28_08860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_08860 PF03466 LysR substrate binding domain M4S28_08865 PF07715 TonB-dependent Receptor Plug Domain M4S28_08865 PF00593 TonB dependent receptor M4S28_08870 PF13649 Methyltransferase domain M4S28_08875 PF00990 Diguanylate cyclase, GGDEF domain M4S28_08875 PF08448 PAS fold M4S28_08880 PF00583 Acetyltransferase (GNAT) family M4S28_08885 PF00082 Subtilase family M4S28_08895 PF01810 LysE type translocator M4S28_08910 PF00149 Calcineurin-like phosphoesterase M4S28_08910 PF12320 Type 5 capsule protein repressor C-terminal domain M4S28_08915 PF13476 AAA domain M4S28_08935 PF04244 Deoxyribodipyrimidine photo-lyase-related protein M4S28_08940 PF03441 FAD binding domain of DNA photolyase M4S28_08940 PF00875 DNA photolyase M4S28_08945 PF00582 Universal stress protein family M4S28_08975 PF07690 Major Facilitator Superfamily M4S28_08980 PF03009 Glycerophosphoryl diester phosphodiesterase family M4S28_08990 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M4S28_08990 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M4S28_09010 PF00293 NUDIX domain M4S28_09025 PF01479 S4 domain M4S28_09025 PF00849 RNA pseudouridylate synthase M4S28_09035 PF12464 Maltose acetyltransferase M4S28_09035 PF00132 Bacterial transferase hexapeptide (six repeats) M4S28_09085 PF03737 Aldolase/RraA M4S28_09110 PF00293 NUDIX domain M4S28_09155 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M4S28_09185 PF17676 LD-carboxypeptidase C-terminal domain M4S28_09185 PF02016 LD-carboxypeptidase N-terminal domain M4S28_09205 PF07516 SecA Wing and Scaffold domain M4S28_09205 PF02810 SEC-C motif M4S28_09205 PF01043 SecA preprotein cross-linking domain M4S28_09205 PF07517 SecA DEAD-like domain M4S28_09210 PF13419 Haloacid dehalogenase-like hydrolase M4S28_09225 PF00132 Bacterial transferase hexapeptide (six repeats) M4S28_09255 PF03616 Sodium/glutamate symporter M4S28_09270 PF12392 Collagenase M4S28_09270 PF01136 Peptidase family U32 M4S28_09280 PF00664 ABC transporter transmembrane region M4S28_09280 PF00005 ABC transporter M4S28_09285 PF00005 ABC transporter M4S28_09290 PF00497 Bacterial extracellular solute-binding proteins, family 3 M4S28_09295 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_09300 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_09305 PF13495 Phage integrase, N-terminal SAM-like domain M4S28_09305 PF00589 Phage integrase family M4S28_09310 PF04986 Putative transposase M4S28_09310 PF14319 Transposase zinc-binding domain M4S28_09375 PF01202 Shikimate kinase M4S28_09410 PF02321 Outer membrane efflux protein M4S28_09415 PF00873 AcrB/AcrD/AcrF family M4S28_09425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_09425 PF03466 LysR substrate binding domain M4S28_09430 PF02397 Bacterial sugar transferase M4S28_09440 PF00534 Glycosyl transferases group 1 M4S28_09440 PF13579 Glycosyl transferase 4-like domain M4S28_09465 PF00534 Glycosyl transferases group 1 M4S28_09465 PF13439 Glycosyltransferase Family 4 M4S28_09470 PF00158 Sigma-54 interaction domain M4S28_09470 PF02954 Bacterial regulatory protein, Fis family M4S28_09470 PF00072 Response regulator receiver domain M4S28_09480 PF00005 ABC transporter M4S28_09480 PF00571 CBS domain M4S28_09485 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_09495 PF00672 HAMP domain M4S28_09495 PF00512 His Kinase A (phospho-acceptor) domain M4S28_09495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_09495 PF01627 Hpt domain M4S28_09495 PF00072 Response regulator receiver domain M4S28_09495 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M4S28_09515 PF00691 OmpA family M4S28_09525 PF14743 DNA ligase OB-like domain M4S28_09525 PF01068 ATP dependent DNA ligase domain M4S28_09530 PF01554 MatE M4S28_09535 PF00677 Lumazine binding domain M4S28_09545 PF03881 Fructosamine kinase M4S28_09555 PF00877 NlpC/P60 family M4S28_09560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M4S28_09560 PF02743 Cache domain M4S28_09560 PF00672 HAMP domain M4S28_09570 PF03942 DTW domain M4S28_09575 PF00480 ROK family M4S28_09585 PF00994 Probable molybdopterin binding domain M4S28_09585 PF03454 MoeA C-terminal region (domain IV) M4S28_09585 PF03453 MoeA N-terminal region (domain I and II) M4S28_09590 PF12804 MobA-like NTP transferase domain M4S28_09595 PF08402 TOBE domain M4S28_09595 PF00005 ABC transporter M4S28_09600 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_09605 PF12849 PBP superfamily domain M4S28_09610 PF00158 Sigma-54 interaction domain M4S28_09610 PF02954 Bacterial regulatory protein, Fis family M4S28_09610 PF00072 Response regulator receiver domain M4S28_09615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_09615 PF00512 His Kinase A (phospho-acceptor) domain M4S28_09620 PF17200 Single Cache domain 2 M4S28_09620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M4S28_09620 PF00672 HAMP domain M4S28_09635 PF12848 ABC transporter M4S28_09635 PF00005 ABC transporter M4S28_09640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M4S28_09640 PF00672 HAMP domain M4S28_09645 PF02634 FdhD/NarQ family M4S28_09665 PF02613 Nitrate reductase delta subunit M4S28_09675 PF01568 Molydopterin dinucleotide binding domain M4S28_09675 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M4S28_09675 PF00384 Molybdopterin oxidoreductase M4S28_09680 PF13247 4Fe-4S dicluster domain M4S28_09695 PF00909 Ammonium Transporter Family M4S28_09700 PF02146 Sir2 family M4S28_09710 PF13416 Bacterial extracellular solute-binding protein M4S28_09715 PF13416 Bacterial extracellular solute-binding protein M4S28_09720 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_09725 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_09730 PF00005 ABC transporter M4S28_09730 PF08402 TOBE domain M4S28_09750 PF01171 PP-loop family M4S28_09755 PF00582 Universal stress protein family M4S28_09760 PF00027 Cyclic nucleotide-binding domain M4S28_09760 PF13545 Crp-like helix-turn-helix domain M4S28_09775 PF00403 Heavy-metal-associated domain M4S28_09785 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP M4S28_09785 PF13442 Cytochrome C oxidase, cbb3-type, subunit III M4S28_09800 PF00115 Cytochrome C and Quinol oxidase polypeptide I M4S28_09815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_09815 PF09308 LuxQ, periplasmic M4S28_09815 PF00512 His Kinase A (phospho-acceptor) domain M4S28_09815 PF00072 Response regulator receiver domain M4S28_09835 PF05707 Zonular occludens toxin (Zot) M4S28_09895 PF05707 Zonular occludens toxin (Zot) M4S28_09955 PF05707 Zonular occludens toxin (Zot) M4S28_10015 PF05707 Zonular occludens toxin (Zot) M4S28_10145 PF17414 MatP C-terminal ribbon-helix-helix domain M4S28_10145 PF06303 MatP N-terminal domain M4S28_10150 PF13654 AAA domain M4S28_10150 PF05362 Lon protease (S16) C-terminal proteolytic domain M4S28_10155 PF07977 FabA-like domain M4S28_10160 PF04957 Ribosome modulation factor M4S28_10170 PF16326 ABC transporter C-terminal domain M4S28_10170 PF12848 ABC transporter M4S28_10170 PF00005 ABC transporter M4S28_10180 PF01170 Putative RNA methylase family UPF0020 M4S28_10180 PF02926 THUMP domain M4S28_10180 PF10672 S-adenosylmethionine-dependent methyltransferase M4S28_10185 PF07126 Cell-division protein ZapC M4S28_10190 PF01180 Dihydroorotate dehydrogenase M4S28_10195 PF05088 Bacterial NAD-glutamate dehydrogenase M4S28_10205 PF11940 Domain of unknown function (DUF3458) Ig-like fold M4S28_10205 PF17432 Domain of unknown function (DUF3458_C) ARM repeats M4S28_10205 PF01433 Peptidase family M1 domain M4S28_10215 PF11818 C-terminal domain of tail specific protease (DUF3340) M4S28_10215 PF00595 PDZ domain M4S28_10215 PF03572 Peptidase family S41 M4S28_10215 PF17804 Tail specific protease N-terminal domain M4S28_10220 PF17516 ProQ C-terminal domain M4S28_10220 PF04352 ProQ/FINO family M4S28_10225 PF13185 GAF domain M4S28_10230 PF00005 ABC transporter M4S28_10230 PF00664 ABC transporter transmembrane region M4S28_10235 PF04403 Paraquat-inducible protein A M4S28_10240 PF02470 MlaD protein M4S28_10245 PF01189 16S rRNA methyltransferase RsmB/F M4S28_10245 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF M4S28_10245 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF M4S28_10250 PF17783 CvfB-like winged helix domain M4S28_10250 PF13509 S1 domain M4S28_10265 PF00391 PEP-utilising enzyme, mobile domain M4S28_10265 PF02896 PEP-utilising enzyme, TIM barrel domain M4S28_10265 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain M4S28_10270 PF00793 DAHP synthetase I family M4S28_10275 PF04461 Protein of unknown function (DUF520) M4S28_10280 PF10414 Sirohaem synthase dimerisation region M4S28_10280 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M4S28_10280 PF14824 Sirohaem biosynthesis protein central M4S28_10285 PF00497 Bacterial extracellular solute-binding proteins, family 3 M4S28_10290 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_10295 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_10300 PF00005 ABC transporter M4S28_10305 PF01027 Inhibitor of apoptosis-promoting Bax1 M4S28_10310 PF04358 DsrC like protein M4S28_10315 PF00708 Acylphosphatase M4S28_10320 PF00672 HAMP domain M4S28_10320 PF12729 Four helix bundle sensory module for signal transduction M4S28_10320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M4S28_10325 PF10672 S-adenosylmethionine-dependent methyltransferase M4S28_10325 PF17785 PUA-like domain M4S28_10345 PF00691 OmpA family M4S28_10345 PF13488 Glycine zipper M4S28_10355 PF17151 Periplasmic sensor domain M4S28_10355 PF00990 Diguanylate cyclase, GGDEF domain M4S28_10360 PF06508 Queuosine biosynthesis protein QueC M4S28_10365 PF04055 Radical SAM superfamily M4S28_10395 PF13193 AMP-binding enzyme C-terminal domain M4S28_10395 PF00501 AMP-binding enzyme M4S28_10395 PF16177 Acetyl-coenzyme A synthetase N-terminus M4S28_10400 PF04303 PrpF protein M4S28_10405 PF00330 Aconitase family (aconitate hydratase) M4S28_10405 PF00694 Aconitase C-terminal domain M4S28_10410 PF00285 Citrate synthase, C-terminal domain M4S28_10425 PF07690 Major Facilitator Superfamily M4S28_10440 PF04717 Type VI secretion system, phage-baseplate injector M4S28_10440 PF06715 Gp5 C-terminal repeat (3 copies) M4S28_10470 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath M4S28_10495 PF00004 ATPase family associated with various cellular activities (AAA) M4S28_10495 PF07724 AAA domain (Cdc48 subfamily) M4S28_10495 PF17871 AAA lid domain M4S28_10495 PF10431 C-terminal, D2-small domain, of ClpB protein M4S28_10525 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE M4S28_10540 PF03793 PASTA domain M4S28_10540 PF00069 Protein kinase domain M4S28_10550 PF00072 Response regulator receiver domain M4S28_10555 PF00672 HAMP domain M4S28_10555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_10555 PF00512 His Kinase A (phospho-acceptor) domain M4S28_10555 PF01627 Hpt domain M4S28_10555 PF00072 Response regulator receiver domain M4S28_10555 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M4S28_10570 PF01970 Tripartite tricarboxylate transporter TctA family M4S28_10585 PF09905 DNA-binding protein VF530 M4S28_10590 PF00072 Response regulator receiver domain M4S28_10595 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain M4S28_10595 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M4S28_10600 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase M4S28_10605 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain M4S28_10605 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain M4S28_10610 PF00072 Response regulator receiver domain M4S28_10610 PF12431 Transcriptional regulator M4S28_10615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_10615 PF00989 PAS fold M4S28_10615 PF17203 Single cache domain 3 M4S28_10615 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain M4S28_10630 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M4S28_10645 PF01235 Sodium:alanine symporter family M4S28_10665 PF01235 Sodium:alanine symporter family M4S28_10680 PF01117 Aerolysin toxin M4S28_10680 PF03440 Aerolysin/Pertussis toxin (APT) domain M4S28_10685 PF01810 LysE type translocator M4S28_10690 PF02074 Carboxypeptidase Taq (M32) metallopeptidase M4S28_10720 PF01925 Sulfite exporter TauE/SafE M4S28_10730 PF01717 Cobalamin-independent synthase, Catalytic domain M4S28_10730 PF08267 Cobalamin-independent synthase, N-terminal domain M4S28_10750 PF01928 CYTH domain M4S28_10765 PF00583 Acetyltransferase (GNAT) family M4S28_10785 PF00158 Sigma-54 interaction domain M4S28_10785 PF02954 Bacterial regulatory protein, Fis family M4S28_10785 PF00072 Response regulator receiver domain M4S28_10790 PF00989 PAS fold M4S28_10790 PF00512 His Kinase A (phospho-acceptor) domain M4S28_10790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_10795 PF00939 Sodium:sulfate symporter transmembrane region M4S28_10825 PF07504 Fungalysin/Thermolysin Propeptide Motif M4S28_10825 PF03413 Peptidase propeptide and YPEB domain M4S28_10825 PF01447 Thermolysin metallopeptidase, catalytic domain M4S28_10825 PF02868 Thermolysin metallopeptidase, alpha-helical domain M4S28_10825 PF04151 Bacterial pre-peptidase C-terminal domain M4S28_10845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_10845 PF03466 LysR substrate binding domain M4S28_10850 PF01212 Beta-eliminating lyase M4S28_10865 PF01641 SelR domain M4S28_10865 PF01625 Peptide methionine sulfoxide reductase M4S28_10875 PF00474 Sodium:solute symporter family M4S28_10885 PF00672 HAMP domain M4S28_10885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M4S28_10885 PF17200 Single Cache domain 2 M4S28_10895 PF11490 DNA polymerase III polC-type N-terminus II M4S28_10895 PF00929 Exonuclease M4S28_10895 PF02811 PHP domain M4S28_10895 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M4S28_10895 PF07733 Bacterial DNA polymerase III alpha NTPase domain M4S28_10895 PF14579 Helix-hairpin-helix motif M4S28_10900 PF00571 CBS domain M4S28_10905 PF07729 FCD domain M4S28_10905 PF00392 Bacterial regulatory proteins, gntR family M4S28_10915 PF07729 FCD domain M4S28_10915 PF00392 Bacterial regulatory proteins, gntR family M4S28_10925 PF08787 Alginate lyase M4S28_10935 PF08787 Alginate lyase M4S28_10945 PF02743 Cache domain M4S28_10945 PF00672 HAMP domain M4S28_10945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M4S28_10950 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M4S28_10950 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M4S28_10960 PF00474 Sodium:solute symporter family M4S28_10965 PF07729 FCD domain M4S28_10965 PF00392 Bacterial regulatory proteins, gntR family M4S28_10970 PF01557 Fumarylacetoacetate (FAA) hydrolase family M4S28_10975 PF05426 Alginate lyase M4S28_10975 PF07940 Heparinase II/III-like protein M4S28_10980 PF05426 Alginate lyase M4S28_10980 PF07940 Heparinase II/III-like protein M4S28_10985 PF07883 Cupin domain M4S28_10990 PF00294 pfkB family carbohydrate kinase M4S28_10995 PF01081 KDPG and KHG aldolase M4S28_11000 PF00474 Sodium:solute symporter family M4S28_11005 PF00497 Bacterial extracellular solute-binding proteins, family 3 M4S28_11005 PF01464 Transglycosylase SLT domain M4S28_11020 PF00491 Arginase family M4S28_11025 PF17810 Arginine decarboxylase helical bundle domain M4S28_11025 PF17944 Arginine decarboxylase C-terminal helical extension M4S28_11025 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain M4S28_11030 PF00171 Aldehyde dehydrogenase family M4S28_11035 PF17932 Tetracyclin repressor-like, C-terminal domain M4S28_11035 PF00440 Bacterial regulatory proteins, tetR family M4S28_11040 PF16326 ABC transporter C-terminal domain M4S28_11040 PF00005 ABC transporter M4S28_11040 PF12848 ABC transporter M4S28_11055 PF04266 ASCH domain M4S28_11060 PF00453 Ribosomal protein L20 M4S28_11065 PF01632 Ribosomal protein L35 M4S28_11070 PF00707 Translation initiation factor IF-3, C-terminal domain M4S28_11070 PF05198 Translation initiation factor IF-3, N-terminal domain M4S28_11075 PF03129 Anticodon binding domain M4S28_11075 PF02824 TGS domain M4S28_11075 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M4S28_11075 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M4S28_11080 PF07070 SpoOM protein M4S28_11085 PF07702 UTRA domain M4S28_11085 PF00392 Bacterial regulatory proteins, gntR family M4S28_11090 PF01979 Amidohydrolase family M4S28_11095 PF00491 Arginase family M4S28_11100 PF17391 Urocanase N-terminal domain M4S28_11100 PF17392 Urocanase C-terminal domain M4S28_11100 PF01175 Urocanase Rossmann-like domain M4S28_11105 PF00221 Aromatic amino acid lyase M4S28_11115 PF04191 Phospholipid methyltransferase M4S28_11120 PF02913 FAD linked oxidases, C-terminal domain M4S28_11120 PF13183 4Fe-4S dicluster domain M4S28_11120 PF01565 FAD binding domain M4S28_11135 PF00691 OmpA family M4S28_11155 PF01259 SAICAR synthetase M4S28_11165 PF00270 DEAD/DEAH box helicase M4S28_11165 PF11898 Domain of unknown function (DUF3418) M4S28_11165 PF04408 Helicase associated domain (HA2) M4S28_11165 PF00271 Helicase conserved C-terminal domain M4S28_11165 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold M4S28_11170 PF00390 Malic enzyme, N-terminal domain M4S28_11170 PF03949 Malic enzyme, NAD binding domain M4S28_11175 PF02698 DUF218 domain M4S28_11180 PF00939 Sodium:sulfate symporter transmembrane region M4S28_11185 PF06942 GlpM protein M4S28_11190 PF00990 Diguanylate cyclase, GGDEF domain M4S28_11190 PF00072 Response regulator receiver domain M4S28_11200 PF00990 Diguanylate cyclase, GGDEF domain M4S28_11205 PF03466 LysR substrate binding domain M4S28_11205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_11215 PF00266 Aminotransferase class-V M4S28_11240 PF07992 Pyridine nucleotide-disulphide oxidoreductase M4S28_11245 PF00664 ABC transporter transmembrane region M4S28_11245 PF00005 ABC transporter M4S28_11250 PF00664 ABC transporter transmembrane region M4S28_11250 PF00005 ABC transporter M4S28_11280 PF00563 EAL domain M4S28_11280 PF00990 Diguanylate cyclase, GGDEF domain M4S28_11280 PF13426 PAS domain M4S28_11290 PF00486 Transcriptional regulatory protein, C terminal M4S28_11295 PF08534 Redoxin M4S28_11305 PF02743 Cache domain M4S28_11305 PF00672 HAMP domain M4S28_11305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M4S28_11310 PF02028 BCCT, betaine/carnitine/choline family transporter M4S28_11315 PF02028 BCCT, betaine/carnitine/choline family transporter M4S28_11320 PF00196 Bacterial regulatory proteins, luxR family M4S28_11320 PF00072 Response regulator receiver domain M4S28_11325 PF07730 Histidine kinase M4S28_11325 PF17200 Single Cache domain 2 M4S28_11330 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component M4S28_11340 PF03480 Bacterial extracellular solute-binding protein, family 7 M4S28_11355 PF00753 Metallo-beta-lactamase superfamily M4S28_11360 PF05951 Bacterial protein of unknown function (DUF882) M4S28_11365 PF01471 Putative peptidoglycan binding domain M4S28_11365 PF03734 L,D-transpeptidase catalytic domain M4S28_11390 PF00925 GTP cyclohydrolase II M4S28_11400 PF03918 Cytochrome C biogenesis protein M4S28_11405 PF08534 Redoxin M4S28_11410 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal M4S28_11410 PF01578 Cytochrome C assembly protein M4S28_11415 PF03916 Polysulphide reductase, NrfD M4S28_11420 PF13247 4Fe-4S dicluster domain M4S28_11430 PF02335 Cytochrome c552 M4S28_11435 PF00581 Rhodanese-like domain M4S28_11445 PF03989 DNA gyrase C-terminal domain, beta-propeller M4S28_11445 PF00521 DNA gyrase/topoisomerase IV, subunit A M4S28_11455 PF03477 ATP cone domain M4S28_11455 PF02867 Ribonucleotide reductase, barrel domain M4S28_11455 PF00317 Ribonucleotide reductase, all-alpha domain M4S28_11460 PF00268 Ribonucleotide reductase, small chain M4S28_11465 PF00175 Oxidoreductase NAD-binding domain M4S28_11465 PF00970 Oxidoreductase FAD-binding domain M4S28_11465 PF00111 2Fe-2S iron-sulfur cluster binding domain M4S28_11475 PF02613 Nitrate reductase delta subunit M4S28_11480 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M4S28_11480 PF01568 Molydopterin dinucleotide binding domain M4S28_11480 PF00384 Molybdopterin oxidoreductase M4S28_11485 PF13247 4Fe-4S dicluster domain M4S28_11485 PF12800 4Fe-4S binding domain M4S28_11490 PF04976 DMSO reductase anchor subunit (DmsC) M4S28_11495 PF00994 Probable molybdopterin binding domain M4S28_11510 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain M4S28_11515 PF16653 Saccharopine dehydrogenase C-terminal domain M4S28_11515 PF03435 Saccharopine dehydrogenase NADP binding domain M4S28_11520 PF00202 Aminotransferase class-III M4S28_11545 PF01066 CDP-alcohol phosphatidyltransferase M4S28_11550 PF08459 UvrC Helix-hairpin-helix N-terminal M4S28_11550 PF02151 UvrB/uvrC motif M4S28_11550 PF01541 GIY-YIG catalytic domain M4S28_11555 PF00072 Response regulator receiver domain M4S28_11555 PF00196 Bacterial regulatory proteins, luxR family M4S28_11560 PF03104 DNA polymerase family B, exonuclease domain M4S28_11560 PF00136 DNA polymerase family B M4S28_11570 PF01132 Elongation factor P (EF-P) OB domain M4S28_11570 PF08207 Elongation factor P (EF-P) KOW-like domain M4S28_11570 PF09285 Elongation factor P, C-terminal M4S28_11575 PF04269 Protein of unknown function, DUF440 M4S28_11585 PF01479 S4 domain M4S28_11585 PF00849 RNA pseudouridylate synthase M4S28_11590 PF01300 Telomere recombination M4S28_11595 PF02811 PHP domain M4S28_11600 PF08056 Tryptophan operon leader peptide M4S28_11605 PF00425 chorismate binding enzyme M4S28_11605 PF04715 Anthranilate synthase component I, N terminal region M4S28_11610 PF00117 Glutamine amidotransferase class-I M4S28_11615 PF02885 Glycosyl transferase family, helical bundle domain M4S28_11615 PF00591 Glycosyl transferase family, a/b domain M4S28_11620 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase M4S28_11620 PF00218 Indole-3-glycerol phosphate synthase M4S28_11625 PF00291 Pyridoxal-phosphate dependent enzyme M4S28_11630 PF00290 Tryptophan synthase alpha chain M4S28_11635 PF16200 C-terminal region of band_7 M4S28_11635 PF01145 SPFH domain / Band 7 family M4S28_11645 PF00375 Sodium:dicarboxylate symporter family M4S28_11650 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component M4S28_11655 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component M4S28_11660 PF03480 Bacterial extracellular solute-binding protein, family 7 M4S28_11665 PF00497 Bacterial extracellular solute-binding proteins, family 3 M4S28_11670 PF00155 Aminotransferase class I and II M4S28_11675 PF03466 LysR substrate binding domain M4S28_11675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_11685 PF04279 Intracellular septation protein A M4S28_11690 PF03061 Thioesterase superfamily M4S28_11695 PF03795 YCII-related domain M4S28_11705 PF01717 Cobalamin-independent synthase, Catalytic domain M4S28_11705 PF08267 Cobalamin-independent synthase, N-terminal domain M4S28_11710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_11710 PF03466 LysR substrate binding domain M4S28_11725 PF08497 Radical SAM N-terminal M4S28_11725 PF04055 Radical SAM superfamily M4S28_11725 PF11842 Domain of unknown function (DUF3362) M4S28_11735 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase M4S28_11740 PF00535 Glycosyl transferase family 2 M4S28_11745 PF00072 Response regulator receiver domain M4S28_11745 PF00486 Transcriptional regulatory protein, C terminal M4S28_11765 PF01266 FAD dependent oxidoreductase M4S28_11770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_11770 PF03466 LysR substrate binding domain M4S28_11780 PF06610 L-alanine exporter M4S28_11785 PF09308 LuxQ, periplasmic M4S28_11785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_11785 PF00512 His Kinase A (phospho-acceptor) domain M4S28_11785 PF00072 Response regulator receiver domain M4S28_11800 PF02445 Quinolinate synthetase A protein M4S28_11805 PF16331 TolA binding protein trimerisation M4S28_11805 PF13174 Tetratricopeptide repeat M4S28_11810 PF00691 OmpA family M4S28_11815 PF07676 WD40-like Beta Propeller Repeat M4S28_11815 PF04052 TolB amino-terminal domain M4S28_11825 PF02472 Biopolymer transport protein ExbD/TolR M4S28_11830 PF01618 MotA/TolQ/ExbB proton channel family M4S28_11835 PF03061 Thioesterase superfamily M4S28_11845 PF08173 Membrane bound YbgT-like protein M4S28_11850 PF02322 Cytochrome bd terminal oxidase subunit II M4S28_11855 PF01654 Cytochrome bd terminal oxidase subunit I M4S28_11860 PF05491 RuvB C-terminal winged helix domain M4S28_11860 PF05496 Holliday junction DNA helicase RuvB P-loop domain M4S28_11860 PF17864 RuvB AAA lid domain M4S28_11865 PF07499 RuvA, C-terminal domain M4S28_11865 PF01330 RuvA N terminal domain M4S28_11870 PF02203 Tar ligand binding domain homologue M4S28_11870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M4S28_11870 PF00672 HAMP domain M4S28_11875 PF02075 Crossover junction endodeoxyribonuclease RuvC M4S28_11880 PF02938 GAD domain M4S28_11880 PF01336 OB-fold nucleic acid binding domain M4S28_11880 PF00152 tRNA synthetases class II (D, K and N) M4S28_11885 PF01904 Protein of unknown function DUF72 M4S28_11890 PF13649 Methyltransferase domain M4S28_11895 PF08003 Protein of unknown function (DUF1698) M4S28_11900 PF08443 RimK-like ATP-grasp domain M4S28_11900 PF18030 RimK PreATP-grasp domain M4S28_11915 PF01568 Molydopterin dinucleotide binding domain M4S28_11915 PF12838 4Fe-4S dicluster domain M4S28_11915 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M4S28_11915 PF00384 Molybdopterin oxidoreductase M4S28_11915 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region M4S28_11920 PF04310 MukB N-terminal M4S28_11920 PF16330 MukB hinge domain M4S28_11925 PF04288 MukE-like family M4S28_11930 PF03882 MukF winged-helix domain M4S28_11930 PF17193 MukF C-terminal domain M4S28_11930 PF17192 MukF middle domain M4S28_11935 PF13847 Methyltransferase domain M4S28_11940 PF02698 DUF218 domain M4S28_11945 PF00072 Response regulator receiver domain M4S28_11945 PF00486 Transcriptional regulatory protein, C terminal M4S28_11950 PF02613 Nitrate reductase delta subunit M4S28_11955 PF00356 Bacterial regulatory proteins, lacI family M4S28_11960 PF04994 TfoX C-terminal domain M4S28_11960 PF04993 TfoX N-terminal domain M4S28_11985 PF00534 Glycosyl transferases group 1 M4S28_11985 PF08323 Starch synthase catalytic domain M4S28_11990 PF00483 Nucleotidyl transferase M4S28_11995 PF08272 Topoisomerase I zinc-ribbon-like M4S28_11995 PF01131 DNA topoisomerase M4S28_11995 PF01751 Toprim domain M4S28_11995 PF01396 Topoisomerase DNA binding C4 zinc finger M4S28_12000 PF10692 Protein of unknown function (DUF2498) M4S28_12005 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M4S28_12015 PF03588 Leucyl/phenylalanyl-tRNA protein transferase M4S28_12020 PF04376 Arginine-tRNA-protein transferase, N terminus M4S28_12020 PF04377 Arginine-tRNA-protein transferase, C terminus M4S28_12025 PF01176 Translation initiation factor 1A / IF-1 M4S28_12030 PF00004 ATPase family associated with various cellular activities (AAA) M4S28_12030 PF07724 AAA domain (Cdc48 subfamily) M4S28_12030 PF10431 C-terminal, D2-small domain, of ClpB protein M4S28_12030 PF02861 Clp amino terminal domain, pathogenicity island component M4S28_12030 PF17871 AAA lid domain M4S28_12035 PF02617 ATP-dependent Clp protease adaptor protein ClpS M4S28_12040 PF00313 'Cold-shock' DNA-binding domain M4S28_12045 PF03971 Monomeric isocitrate dehydrogenase M4S28_12050 PF00849 RNA pseudouridylate synthase M4S28_12065 PF06733 DEAD_2 M4S28_12065 PF13307 Helicase C-terminal domain M4S28_12070 PF01925 Sulfite exporter TauE/SafE M4S28_12080 PF10689 Protein of unknown function (DUF2496) M4S28_12085 PF08007 Cupin superfamily protein M4S28_12090 PF00672 HAMP domain M4S28_12090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M4S28_12095 PF07690 Major Facilitator Superfamily M4S28_12100 PF00326 Prolyl oligopeptidase family M4S28_12100 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain M4S28_12105 PF03372 Endonuclease/Exonuclease/phosphatase family M4S28_12110 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_12115 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_12120 PF00497 Bacterial extracellular solute-binding proteins, family 3 M4S28_12125 PF00005 ABC transporter M4S28_12135 PF01228 Glycine radical M4S28_12135 PF02901 Pyruvate formate lyase-like M4S28_12145 PF04055 Radical SAM superfamily M4S28_12150 PF03887 YfbU domain M4S28_12155 PF06629 MltA-interacting protein MipA M4S28_12160 PF08298 PrkA AAA domain M4S28_12160 PF06798 PrkA serine protein kinase C-terminal domain M4S28_12165 PF04285 Protein of unknown function (DUF444) M4S28_12170 PF04293 SpoVR like protein M4S28_12175 PF01343 Peptidase family S49 M4S28_12175 PF08496 Peptidase family S49 N-terminal M4S28_12180 PF00106 short chain dehydrogenase M4S28_12185 PF00154 recA bacterial DNA recombination protein M4S28_12195 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M4S28_12195 PF14579 Helix-hairpin-helix motif M4S28_12195 PF02811 PHP domain M4S28_12195 PF01336 OB-fold nucleic acid binding domain M4S28_12195 PF07733 Bacterial DNA polymerase III alpha NTPase domain M4S28_12200 PF01584 CheW-like domain M4S28_12200 PF00072 Response regulator receiver domain M4S28_12205 PF00480 ROK family M4S28_12210 PF00224 Pyruvate kinase, barrel domain M4S28_12210 PF02887 Pyruvate kinase, alpha/beta domain M4S28_12215 PF01734 Patatin-like phospholipase M4S28_12235 PF00367 phosphotransferase system, EIIB M4S28_12235 PF02378 Phosphotransferase system, EIIC M4S28_12240 PF01026 TatD related DNase M4S28_12245 PF09115 DNA polymerase III, delta subunit, C terminal M4S28_12250 PF02223 Thymidylate kinase M4S28_12255 PF02618 YceG-like family M4S28_12260 PF01063 Amino-transferase class IV M4S28_12265 PF00109 Beta-ketoacyl synthase, N-terminal domain M4S28_12265 PF02801 Beta-ketoacyl synthase, C-terminal domain M4S28_12270 PF00550 Phosphopantetheine attachment site M4S28_12280 PF00698 Acyl transferase domain M4S28_12285 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M4S28_12285 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M4S28_12290 PF02504 Fatty acid synthesis protein M4S28_12295 PF01783 Ribosomal L32p protein family M4S28_12300 PF02620 Large ribosomal RNA subunit accumulation protein YceD M4S28_12305 PF02545 Maf-like protein M4S28_12310 PF01479 S4 domain M4S28_12310 PF00849 RNA pseudouridylate synthase M4S28_12315 PF12111 Polyribonucleotide phosphorylase C terminal M4S28_12315 PF10150 Ribonuclease E/G family M4S28_12315 PF00575 S1 RNA binding domain M4S28_12320 PF00916 Sulfate permease family M4S28_12320 PF01740 STAS domain M4S28_12330 PF01451 Low molecular weight phosphotyrosine protein phosphatase M4S28_12335 PF12557 Cob(I)alamin adenosyltransferase N terminal M4S28_12335 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP M4S28_12340 PF05170 AsmA family M4S28_12345 PF00485 Phosphoribulokinase / Uridine kinase family M4S28_12350 PF10609 NUBPL iron-transfer P-loop NTPase M4S28_12355 PF01588 Putative tRNA binding domain M4S28_12355 PF09334 tRNA synthetases class I (M) M4S28_12365 PF00392 Bacterial regulatory proteins, gntR family M4S28_12365 PF07840 FadR C-terminal domain M4S28_12370 PF06450 Bacterial Na+/H+ antiporter B (NhaB) M4S28_12375 PF02600 Disulfide bond formation protein DsbB M4S28_12380 PF02810 SEC-C motif M4S28_12380 PF01043 SecA preprotein cross-linking domain M4S28_12380 PF07516 SecA Wing and Scaffold domain M4S28_12380 PF07517 SecA DEAD-like domain M4S28_12385 PF07963 Prokaryotic N-terminal methylation motif M4S28_12385 PF08334 Type II secretion system (T2SS), protein G M4S28_12390 PF01207 Dihydrouridine synthase (Dus) M4S28_12395 PF05230 MASE2 domain M4S28_12395 PF00990 Diguanylate cyclase, GGDEF domain M4S28_12400 PF00128 Alpha amylase, catalytic domain M4S28_12400 PF02903 Alpha amylase, N-terminal ig-like domain M4S28_12410 PF04217 Protein of unknown function, DUF412 M4S28_12415 PF00871 Acetokinase family M4S28_12420 PF07085 DRTGG domain M4S28_12420 PF01515 Phosphate acetyl/butaryl transferase M4S28_12425 PF13409 Glutathione S-transferase, N-terminal domain M4S28_12430 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M4S28_12430 PF00005 ABC transporter M4S28_12435 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M4S28_12435 PF00005 ABC transporter M4S28_12440 PF12911 N-terminal TM domain of oligopeptide transport permease C M4S28_12440 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_12445 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_12450 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M4S28_12455 PF02391 MoaE protein M4S28_12460 PF02597 ThiS family M4S28_12465 PF01967 MoaC family M4S28_12470 PF00994 Probable molybdopterin binding domain M4S28_12475 PF06463 Molybdenum Cofactor Synthesis C M4S28_12475 PF04055 Radical SAM superfamily M4S28_12480 PF01933 Uncharacterised protein family UPF0052 M4S28_12485 PF01627 Hpt domain M4S28_12490 PF00072 Response regulator receiver domain M4S28_12490 PF00158 Sigma-54 interaction domain M4S28_12490 PF02954 Bacterial regulatory protein, Fis family M4S28_12495 PF04851 Type III restriction enzyme, res subunit M4S28_12495 PF17757 UvrB interaction domain M4S28_12495 PF02151 UvrB/uvrC motif M4S28_12495 PF00271 Helicase conserved C-terminal domain M4S28_12495 PF12344 Ultra-violet resistance protein B M4S28_12510 PF02508 Rnf-Nqr subunit, membrane protein M4S28_12515 PF04060 Putative Fe-S cluster M4S28_12520 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit M4S28_12520 PF12838 4Fe-4S dicluster domain M4S28_12520 PF13375 RnfC Barrel sandwich hybrid domain M4S28_12520 PF10531 SLBB domain M4S28_12525 PF03116 NQR2, RnfD, RnfE family M4S28_12530 PF04205 FMN-binding domain M4S28_12535 PF02508 Rnf-Nqr subunit, membrane protein M4S28_12540 PF10576 Iron-sulfur binding domain of endonuclease III M4S28_12540 PF00633 Helix-hairpin-helix motif M4S28_12540 PF00730 HhH-GPD superfamily base excision DNA repair protein M4S28_12545 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M4S28_12550 PF10952 Protein of unknown function (DUF2753) M4S28_12555 PF00691 OmpA family M4S28_12555 PF18393 MotY N-terminal domain M4S28_12560 PF00929 Exonuclease M4S28_12565 PF13726 Na+-H+ antiporter family M4S28_12565 PF03553 Na+/H+ antiporter family M4S28_12575 PF00462 Glutaredoxin M4S28_12580 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain M4S28_12580 PF02777 Iron/manganese superoxide dismutases, C-terminal domain M4S28_12595 PF00171 Aldehyde dehydrogenase family M4S28_12595 PF00465 Iron-containing alcohol dehydrogenase M4S28_12600 PF01914 MarC family integral membrane protein M4S28_12605 PF00027 Cyclic nucleotide-binding domain M4S28_12605 PF00520 Ion transport protein M4S28_12610 PF01118 Semialdehyde dehydrogenase, NAD binding domain M4S28_12610 PF02774 Semialdehyde dehydrogenase, dimerisation domain M4S28_12615 PF03553 Na+/H+ antiporter family M4S28_12630 PF04245 37-kD nucleoid-associated bacterial protein M4S28_12635 PF07208 Protein of unknown function (DUF1414) M4S28_12640 PF11893 Domain of unknown function (DUF3413) M4S28_12640 PF00884 Sulfatase M4S28_12655 PF02082 Transcriptional regulator M4S28_12665 PF00850 Histone deacetylase domain M4S28_12670 PF00106 short chain dehydrogenase M4S28_12680 PF01131 DNA topoisomerase M4S28_12680 PF01751 Toprim domain M4S28_12685 PF00881 Nitroreductase family M4S28_12690 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M4S28_12690 PF07992 Pyridine nucleotide-disulphide oxidoreductase M4S28_12695 PF01343 Peptidase family S49 M4S28_12700 PF00710 Asparaginase, N-terminal M4S28_12700 PF17763 Glutaminase/Asparaginase C-terminal domain M4S28_12705 PF07023 Protein of unknown function (DUF1315) M4S28_12715 PF01641 SelR domain M4S28_12720 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M4S28_12720 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M4S28_12725 PF01263 Aldose 1-epimerase M4S28_12730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M4S28_12730 PF08447 PAS fold M4S28_12730 PF13426 PAS domain M4S28_12735 PF13847 Methyltransferase domain M4S28_12750 PF02028 BCCT, betaine/carnitine/choline family transporter M4S28_12755 PF00245 Alkaline phosphatase M4S28_12765 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M4S28_12775 PF03692 Putative zinc- or iron-chelating domain M4S28_12780 PF03692 Putative zinc- or iron-chelating domain M4S28_12785 PF00230 Major intrinsic protein M4S28_12790 PF02132 RecR protein M4S28_12790 PF13662 Toprim domain M4S28_12795 PF02575 YbaB/EbfC DNA-binding family M4S28_12800 PF12169 DNA polymerase III subunits gamma and tau domain III M4S28_12800 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding M4S28_12800 PF12170 DNA polymerase III tau subunit V interacting with alpha M4S28_12805 PF00156 Phosphoribosyl transferase domain M4S28_12810 PF04304 Protein of unknown function (DUF454) M4S28_12815 PF00072 Response regulator receiver domain M4S28_12820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_12820 PF03466 LysR substrate binding domain M4S28_12825 PF00156 Phosphoribosyl transferase domain M4S28_12830 PF02674 Colicin V production protein M4S28_12835 PF05036 Sporulation related domain M4S28_12840 PF08245 Mur ligase middle domain M4S28_12840 PF02875 Mur ligase family, glutamate ligase domain M4S28_12845 PF01039 Carboxyl transferase domain M4S28_12845 PF17848 Acetyl-coA carboxylase zinc finger domain M4S28_12850 PF01416 tRNA pseudouridine synthase M4S28_12860 PF01118 Semialdehyde dehydrogenase, NAD binding domain M4S28_12860 PF02774 Semialdehyde dehydrogenase, dimerisation domain M4S28_12865 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M4S28_12865 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M4S28_12865 PF11890 Domain of unknown function (DUF3410) M4S28_12870 PF02801 Beta-ketoacyl synthase, C-terminal domain M4S28_12870 PF00109 Beta-ketoacyl synthase, N-terminal domain M4S28_12875 PF01266 FAD dependent oxidoreductase M4S28_12875 PF05430 S-adenosyl-L-methionine-dependent methyltransferase M4S28_12880 PF03358 NADPH-dependent FMN reductase M4S28_12885 PF08891 YfcL protein M4S28_12890 PF04315 Elongation factor P hydroxylase M4S28_12895 PF03458 UPF0126 domain M4S28_12900 PF01264 Chorismate synthase M4S28_12915 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain M4S28_12915 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain M4S28_12925 PF01773 Na+ dependent nucleoside transporter N-terminus M4S28_12925 PF07670 Nucleoside recognition M4S28_12925 PF07662 Na+ dependent nucleoside transporter C-terminus M4S28_12930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_12930 PF03466 LysR substrate binding domain M4S28_12935 PF13406 Transglycosylase SLT domain M4S28_12940 PF05166 YcgL domain M4S28_12945 PF03775 Septum formation inhibitor MinC, C-terminal domain M4S28_12945 PF05209 Septum formation inhibitor MinC, N-terminal domain M4S28_12950 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain M4S28_12955 PF03776 Septum formation topological specificity factor MinE M4S28_12960 PF01612 3'-5' exonuclease M4S28_12960 PF00570 HRDC domain M4S28_12965 PF00501 AMP-binding enzyme M4S28_12965 PF13193 AMP-binding enzyme C-terminal domain M4S28_12970 PF00561 alpha/beta hydrolase fold M4S28_12985 PF00814 Glycoprotease family M4S28_12990 PF04851 Type III restriction enzyme, res subunit M4S28_12990 PF13307 Helicase C-terminal domain M4S28_13000 PF01842 ACT domain M4S28_13000 PF00551 Formyl transferase M4S28_13005 PF06185 YecM protein M4S28_13010 PF03485 Arginyl tRNA synthetase N terminal domain M4S28_13010 PF05746 DALR anticodon binding domain M4S28_13010 PF00750 tRNA synthetases class I (R) M4S28_13025 PF02421 Ferrous iron transport protein B M4S28_13025 PF07670 Nucleoside recognition M4S28_13025 PF07664 Ferrous iron transport protein B C terminus M4S28_13030 PF04023 FeoA domain M4S28_13040 PF12833 Helix-turn-helix domain M4S28_13045 PF01297 Zinc-uptake complex component A periplasmic M4S28_13050 PF00005 ABC transporter M4S28_13055 PF00950 ABC 3 transport family M4S28_13060 PF02629 CoA binding domain M4S28_13060 PF00549 CoA-ligase M4S28_13065 PF00549 CoA-ligase M4S28_13065 PF08442 ATP-grasp domain M4S28_13070 PF00364 Biotin-requiring enzyme M4S28_13070 PF02817 e3 binding domain M4S28_13070 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M4S28_13075 PF02779 Transketolase, pyrimidine binding domain M4S28_13075 PF00676 Dehydrogenase E1 component M4S28_13075 PF16078 2-oxoglutarate dehydrogenase N-terminus M4S28_13075 PF16870 2-oxoglutarate dehydrogenase C-terminal M4S28_13080 PF13085 2Fe-2S iron-sulfur cluster binding domain M4S28_13085 PF00890 FAD binding domain M4S28_13085 PF02910 Fumarate reductase flavoprotein C-term M4S28_13090 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M4S28_13095 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M4S28_13100 PF00285 Citrate synthase, C-terminal domain M4S28_13105 PF01784 NIF3 (NGG1p interacting factor 3) M4S28_13115 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M4S28_13115 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M4S28_13115 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M4S28_13115 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M4S28_13120 PF03925 SeqA protein C-terminal domain M4S28_13120 PF17206 SeqA protein N-terminal domain M4S28_13125 PF12697 Alpha/beta hydrolase family M4S28_13135 PF00258 Flavodoxin M4S28_13145 PF01475 Ferric uptake regulator family M4S28_13150 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain M4S28_13150 PF00749 tRNA synthetases class I (E and Q), catalytic domain M4S28_13155 PF00367 phosphotransferase system, EIIB M4S28_13155 PF02378 Phosphotransferase system, EIIC M4S28_13160 PF01979 Amidohydrolase family M4S28_13165 PF00480 ROK family M4S28_13165 PF01047 MarR family M4S28_13170 PF00999 Sodium/hydrogen exchanger family M4S28_13170 PF02254 TrkA-N domain M4S28_13175 PF13537 Glutamine amidotransferase domain M4S28_13175 PF00733 Asparagine synthase M4S28_13180 PF02357 Transcription termination factor nusG M4S28_13190 PF00854 POT family M4S28_13195 PF00762 Ferrochelatase M4S28_13200 PF05191 Adenylate kinase, active site lid M4S28_13205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_13205 PF00183 Hsp90 protein M4S28_13210 PF00486 Transcriptional regulatory protein, C terminal M4S28_13215 PF17323 Trans-membrane regulatory protein ToxS M4S28_13225 PF12850 Calcineurin-like phosphoesterase superfamily domain M4S28_13240 PF07556 Protein of unknown function (DUF1538) M4S28_13245 PF07556 Protein of unknown function (DUF1538) M4S28_13250 PF01370 NAD dependent epimerase/dehydratase family M4S28_13250 PF08338 Domain of unknown function (DUF1731) M4S28_13255 PF00106 short chain dehydrogenase M4S28_13260 PF00085 Thioredoxin M4S28_13265 PF16200 C-terminal region of band_7 M4S28_13265 PF01145 SPFH domain / Band 7 family M4S28_13275 PF13411 MerR HTH family regulatory protein M4S28_13285 PF13609 Gram-negative porin M4S28_13290 PF03119 NAD-dependent DNA ligase C4 zinc finger domain M4S28_13290 PF03120 NAD-dependent DNA ligase OB-fold domain M4S28_13290 PF01653 NAD-dependent DNA ligase adenylation domain M4S28_13290 PF00533 BRCA1 C Terminus (BRCT) domain M4S28_13290 PF12826 Helix-hairpin-helix motif M4S28_13295 PF04354 ZipA, C-terminal FtsZ-binding domain M4S28_13305 PF00291 Pyridoxal-phosphate dependent enzyme M4S28_13310 PF00381 PTS HPr component phosphorylation site M4S28_13315 PF02896 PEP-utilising enzyme, TIM barrel domain M4S28_13315 PF00391 PEP-utilising enzyme, mobile domain M4S28_13315 PF05524 PEP-utilising enzyme, N-terminal M4S28_13320 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 M4S28_13325 PF07196 Flagellin hook IN motif M4S28_13325 PF00669 Bacterial flagellin N-terminal helical region M4S28_13325 PF00700 Bacterial flagellin C-terminal helical region M4S28_13330 PF00700 Bacterial flagellin C-terminal helical region M4S28_13330 PF07196 Flagellin hook IN motif M4S28_13330 PF00669 Bacterial flagellin N-terminal helical region M4S28_13335 PF04261 Dyp-type peroxidase family M4S28_13340 PF11143 Protein of unknown function (DUF2919) M4S28_13360 PF03960 ArsC family M4S28_13365 PF07687 Peptidase dimerisation domain M4S28_13365 PF01546 Peptidase family M20/M25/M40 M4S28_13380 PF06804 NlpB/DapX lipoprotein M4S28_13385 PF00701 Dihydrodipicolinate synthetase family M4S28_13390 PF01842 ACT domain M4S28_13395 PF00578 AhpC/TSA family M4S28_13400 PF01594 AI-2E family transporter M4S28_13410 PF01435 Peptidase family M48 M4S28_13410 PF13181 Tetratricopeptide repeat M4S28_13415 PF03960 ArsC family M4S28_13420 PF03358 NADPH-dependent FMN reductase M4S28_13435 PF00860 Permease family M4S28_13445 PF00586 AIR synthase related protein, N-terminal domain M4S28_13445 PF02769 AIR synthase related protein, C-terminal domain M4S28_13450 PF00551 Formyl transferase M4S28_13455 PF13230 Glutamine amidotransferases class-II M4S28_13460 PF13580 SIS domain M4S28_13465 PF09317 Domain of unknown function (DUF1974) M4S28_13465 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M4S28_13465 PF02770 Acyl-CoA dehydrogenase, middle domain M4S28_13465 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M4S28_13475 PF00929 Exonuclease M4S28_13480 PF00075 RNase H M4S28_13485 PF08241 Methyltransferase domain M4S28_13490 PF00753 Metallo-beta-lactamase superfamily M4S28_13490 PF16123 Hydroxyacylglutathione hydrolase C-terminus M4S28_13495 PF01476 LysM domain M4S28_13495 PF01464 Transglycosylase SLT domain M4S28_13505 PF03372 Endonuclease/Exonuclease/phosphatase family M4S28_13510 PF00543 Nitrogen regulatory protein P-II M4S28_13515 PF00034 Cytochrome c M4S28_13520 PF11734 TilS substrate C-terminal domain M4S28_13520 PF09179 TilS substrate binding domain M4S28_13520 PF01171 PP-loop family M4S28_13525 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit M4S28_13530 PF01336 OB-fold nucleic acid binding domain M4S28_13530 PF02811 PHP domain M4S28_13530 PF14579 Helix-hairpin-helix motif M4S28_13530 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M4S28_13530 PF07733 Bacterial DNA polymerase III alpha NTPase domain M4S28_13535 PF01351 Ribonuclease HII M4S28_13540 PF02684 Lipid-A-disaccharide synthetase M4S28_13545 PF00132 Bacterial transferase hexapeptide (six repeats) M4S28_13545 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 M4S28_13550 PF07977 FabA-like domain M4S28_13555 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD M4S28_13555 PF00132 Bacterial transferase hexapeptide (six repeats) M4S28_13560 PF03938 Outer membrane protein (OmpH-like) M4S28_13565 PF01103 Surface antigen M4S28_13565 PF07244 Surface antigen variable number repeat M4S28_13570 PF17820 PDZ domain M4S28_13570 PF02163 Peptidase family M50 M4S28_13575 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain M4S28_13575 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase M4S28_13575 PF13288 DXP reductoisomerase C-terminal domain M4S28_13585 PF01255 Putative undecaprenyl diphosphate synthase M4S28_13590 PF01765 Ribosome recycling factor M4S28_13595 PF00696 Amino acid kinase family M4S28_13600 PF00889 Elongation factor TS M4S28_13605 PF00318 Ribosomal protein S2 M4S28_13610 PF00557 Metallopeptidase family M24 M4S28_13615 PF01842 ACT domain M4S28_13615 PF08335 GlnD PII-uridylyltransferase M4S28_13615 PF01966 HD domain M4S28_13615 PF01909 Nucleotidyltransferase domain M4S28_13620 PF11944 Protein of unknown function (DUF3461) M4S28_13625 PF00849 RNA pseudouridylate synthase M4S28_13630 PF04287 tRNA pseudouridine synthase C M4S28_13655 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 M4S28_13675 PF03806 AbgT putative transporter family M4S28_13680 PF00444 Ribosomal protein L36 M4S28_13685 PF01197 Ribosomal protein L31 M4S28_13690 PF01980 tRNA-methyltransferase O M4S28_13690 PF18389 TrmO C-terminal domain M4S28_13695 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M4S28_13695 PF03129 Anticodon binding domain M4S28_13695 PF04073 Aminoacyl-tRNA editing domain M4S28_13705 PF06786 Uncharacterised protein family (UPF0253) M4S28_13720 PF00464 Serine hydroxymethyltransferase M4S28_13740 PF16657 Maltogenic Amylase, C-terminal domain M4S28_13740 PF00128 Alpha amylase, catalytic domain M4S28_13745 PF00367 phosphotransferase system, EIIB M4S28_13745 PF02378 Phosphotransferase system, EIIC M4S28_13750 PF00356 Bacterial regulatory proteins, lacI family M4S28_13765 PF00005 ABC transporter M4S28_13765 PF09383 NIL domain M4S28_13770 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_13775 PF03180 NLPA lipoprotein M4S28_13780 PF02264 LamB porin M4S28_13785 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) M4S28_13800 PF00691 OmpA family M4S28_13810 PF07348 Syd protein (SUKH-2) M4S28_13815 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term M4S28_13815 PF14489 QueF-like protein M4S28_13825 PF00990 Diguanylate cyclase, GGDEF domain M4S28_13830 PF03641 Possible lysine decarboxylase M4S28_13830 PF11892 Domain of unknown function (DUF3412) M4S28_13830 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases M4S28_13835 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M4S28_13835 PF01367 5'-3' exonuclease, C-terminal SAM fold M4S28_13840 PF07715 TonB-dependent Receptor Plug Domain M4S28_13840 PF00593 TonB dependent receptor M4S28_13845 PF01728 FtsJ-like methyltransferase M4S28_13845 PF18125 RlmM ferredoxin-like domain M4S28_13860 PF03466 LysR substrate binding domain M4S28_13860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_13865 PF02926 THUMP domain M4S28_13865 PF02568 Thiamine biosynthesis protein (ThiI) M4S28_13870 PF13677 Membrane MotB of proton-channel complex MotA/MotB M4S28_13870 PF00691 OmpA family M4S28_13875 PF01618 MotA/TolQ/ExbB proton channel family M4S28_13880 PF02609 Exonuclease VII small subunit M4S28_13885 PF00348 Polyprenyl synthetase M4S28_13890 PF13292 1-deoxy-D-xylulose-5-phosphate synthase M4S28_13890 PF02780 Transketolase, C-terminal domain M4S28_13890 PF02779 Transketolase, pyrimidine binding domain M4S28_13900 PF04608 Phosphatidylglycerophosphatase A M4S28_13905 PF00586 AIR synthase related protein, N-terminal domain M4S28_13905 PF02769 AIR synthase related protein, C-terminal domain M4S28_13910 PF01029 NusB family M4S28_13915 PF00885 6,7-dimethyl-8-ribityllumazine synthase M4S28_13920 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase M4S28_13920 PF00925 GTP cyclohydrolase II M4S28_13925 PF00677 Lumazine binding domain M4S28_13930 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M4S28_13930 PF01872 RibD C-terminal domain M4S28_13935 PF03477 ATP cone domain M4S28_13940 PF00171 Aldehyde dehydrogenase family M4S28_13945 PF00696 Amino acid kinase family M4S28_13945 PF01472 PUA domain M4S28_13950 PF07417 Sigma factor-binding transcriptional regulator Crl M4S28_13955 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) M4S28_13960 PF00156 Phosphoribosyl transferase domain M4S28_13965 PF00860 Permease family M4S28_13970 PF01546 Peptidase family M20/M25/M40 M4S28_13970 PF07687 Peptidase dimerisation domain M4S28_13990 PF00962 Adenosine/AMP deaminase M4S28_14005 PF01588 Putative tRNA binding domain M4S28_14010 PF00356 Bacterial regulatory proteins, lacI family M4S28_14015 PF01263 Aldose 1-epimerase M4S28_14020 PF10509 Galactokinase galactose-binding signature M4S28_14020 PF08544 GHMP kinases C terminal M4S28_14020 PF00288 GHMP kinases N terminal domain M4S28_14025 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain M4S28_14025 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain M4S28_14030 PF16363 GDP-mannose 4,6 dehydratase M4S28_14035 PF00356 Bacterial regulatory proteins, lacI family M4S28_14040 PF02837 Glycosyl hydrolases family 2, sugar binding domain M4S28_14040 PF02836 Glycosyl hydrolases family 2, TIM barrel domain M4S28_14040 PF00703 Glycosyl hydrolases family 2 M4S28_14040 PF16353 Domain of unknown function(DUF4981) M4S28_14040 PF02929 Beta galactosidase small chain M4S28_14045 PF04074 YhcH/YjgK/YiaL M4S28_14050 PF13520 Amino acid permease M4S28_14055 PF13520 Amino acid permease M4S28_14065 PF01204 Trehalase M4S28_14070 PF02929 Beta galactosidase small chain M4S28_14070 PF16353 Domain of unknown function(DUF4981) M4S28_14070 PF00703 Glycosyl hydrolases family 2 M4S28_14070 PF02836 Glycosyl hydrolases family 2, TIM barrel domain M4S28_14070 PF02837 Glycosyl hydrolases family 2, sugar binding domain M4S28_14080 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_14085 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_14090 PF17912 MalK OB fold domain M4S28_14090 PF00005 ABC transporter M4S28_14095 PF01554 MatE M4S28_14100 PF00474 Sodium:solute symporter family M4S28_14105 PF16874 Glycosyl hydrolase family 36 C-terminal domain M4S28_14105 PF16875 Glycosyl hydrolase family 36 N-terminal domain M4S28_14110 PF00356 Bacterial regulatory proteins, lacI family M4S28_14115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_14115 PF03466 LysR substrate binding domain M4S28_14120 PF02417 Chromate transporter M4S28_14150 PF00437 Type II/IV secretion system protein M4S28_14180 PF04972 BON domain M4S28_14180 PF00263 Bacterial type II and III secretion system protein M4S28_14180 PF13629 Pilus formation protein N terminal region M4S28_14205 PF02311 AraC-like ligand binding domain M4S28_14205 PF12833 Helix-turn-helix domain M4S28_14210 PF00501 AMP-binding enzyme M4S28_14215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_14215 PF03466 LysR substrate binding domain M4S28_14225 PF03466 LysR substrate binding domain M4S28_14225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_14230 PF09905 DNA-binding protein VF530 M4S28_14235 PF00009 Elongation factor Tu GTP binding domain M4S28_14235 PF03764 Elongation factor G, domain IV M4S28_14235 PF14492 Elongation Factor G, domain II M4S28_14235 PF00679 Elongation factor G C-terminus M4S28_14235 PF03144 Elongation factor Tu domain 2 M4S28_14240 PF18073 Rubredoxin metal binding domain M4S28_14250 PF18429 Domain of unknown function (DUF5609) M4S28_14260 PF01048 Phosphorylase superfamily M4S28_14265 PF01676 Metalloenzyme superfamily M4S28_14270 PF02885 Glycosyl transferase family, helical bundle domain M4S28_14270 PF00591 Glycosyl transferase family, a/b domain M4S28_14270 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain M4S28_14275 PF01791 DeoC/LacD family aldolase M4S28_14280 PF01773 Na+ dependent nucleoside transporter N-terminus M4S28_14280 PF07662 Na+ dependent nucleoside transporter C-terminus M4S28_14280 PF07670 Nucleoside recognition M4S28_14285 PF01026 TatD related DNase M4S28_14305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_14305 PF03466 LysR substrate binding domain M4S28_14310 PF16658 Class II release factor RF3, C-terminal domain M4S28_14310 PF03144 Elongation factor Tu domain 2 M4S28_14310 PF00009 Elongation factor Tu GTP binding domain M4S28_14315 PF00583 Acetyltransferase (GNAT) family M4S28_14325 PF13508 Acetyltransferase (GNAT) domain M4S28_14330 PF02036 SCP-2 sterol transfer family M4S28_14335 PF00990 Diguanylate cyclase, GGDEF domain M4S28_14335 PF00563 EAL domain M4S28_14335 PF03707 Bacterial signalling protein N terminal repeat M4S28_14340 PF01136 Peptidase family U32 M4S28_14345 PF01136 Peptidase family U32 M4S28_14350 PF01554 MatE M4S28_14360 PF07719 Tetratricopeptide repeat M4S28_14360 PF13181 Tetratricopeptide repeat M4S28_14365 PF00013 KH domain M4S28_14365 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain M4S28_14365 PF01138 3' exoribonuclease family, domain 1 M4S28_14365 PF03725 3' exoribonuclease family, domain 2 M4S28_14365 PF00575 S1 RNA binding domain M4S28_14370 PF00312 Ribosomal protein S15 M4S28_14375 PF09157 Pseudouridine synthase II TruB, C-terminal M4S28_14375 PF16198 tRNA pseudouridylate synthase B C-terminal domain M4S28_14375 PF01509 TruB family pseudouridylate synthase (N terminal domain) M4S28_14380 PF02033 Ribosome-binding factor A M4S28_14385 PF08364 Bacterial translation initiation factor IF-2 associated region M4S28_14385 PF11987 Translation-initiation factor 2 M4S28_14385 PF00009 Elongation factor Tu GTP binding domain M4S28_14385 PF04760 Translation initiation factor IF-2, N-terminal region M4S28_14390 PF13184 NusA-like KH domain M4S28_14390 PF08529 NusA N-terminal domain M4S28_14390 PF00575 S1 RNA binding domain M4S28_14395 PF02576 RimP N-terminal domain M4S28_14395 PF17384 RimP C-terminal SH3 domain M4S28_14410 PF03840 Preprotein translocase SecG subunit M4S28_14415 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M4S28_14415 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M4S28_14415 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M4S28_14415 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M4S28_14420 PF00809 Pterin binding enzyme M4S28_14425 PF00004 ATPase family associated with various cellular activities (AAA) M4S28_14425 PF17862 AAA+ lid domain M4S28_14425 PF06480 FtsH Extracellular M4S28_14425 PF01434 Peptidase family M41 M4S28_14430 PF01728 FtsJ-like methyltransferase M4S28_14435 PF01985 CRS1 / YhbY (CRM) domain M4S28_14440 PF01272 Transcription elongation factor, GreA/GreB, C-term M4S28_14440 PF03449 Transcription elongation factor, N-terminal M4S28_14445 PF13609 Gram-negative porin M4S28_14450 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family M4S28_14455 PF00571 CBS domain M4S28_14455 PF01769 Divalent cation transporter M4S28_14455 PF03448 MgtE intracellular N domain M4S28_14460 PF00579 tRNA synthetases class I (W and Y) M4S28_14465 PF01551 Peptidase family M23 M4S28_14465 PF08525 Opacity-associated protein A N-terminal motif M4S28_14465 PF01476 LysM domain M4S28_14470 PF00873 AcrB/AcrD/AcrF family M4S28_14480 PF01521 Iron-sulphur cluster biosynthesis M4S28_14485 PF00202 Aminotransferase class-III M4S28_14490 PF01594 AI-2E family transporter M4S28_14495 PF08468 Methyltransferase small domain N-terminal M4S28_14495 PF05175 Methyltransferase small domain M4S28_14500 PF01627 Hpt domain M4S28_14500 PF00512 His Kinase A (phospho-acceptor) domain M4S28_14500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_14500 PF00672 HAMP domain M4S28_14500 PF17149 Periplasmic sensor domain found in signal transduction proteins M4S28_14500 PF00072 Response regulator receiver domain M4S28_14505 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M4S28_14510 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_14515 PF12911 N-terminal TM domain of oligopeptide transport permease C M4S28_14515 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_14520 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M4S28_14520 PF00005 ABC transporter M4S28_14525 PF00005 ABC transporter M4S28_14525 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M4S28_14535 PF01869 BadF/BadG/BcrA/BcrD ATPase family M4S28_14540 PF00728 Glycosyl hydrolase family 20, catalytic domain M4S28_14540 PF02838 Glycosyl hydrolase family 20, domain 2 M4S28_14545 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain M4S28_14545 PF06165 Glycosyltransferase family 36 M4S28_14550 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M4S28_14550 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M4S28_14550 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M4S28_14550 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M4S28_14555 PF00005 ABC transporter M4S28_14555 PF08402 TOBE domain M4S28_14565 PF13416 Bacterial extracellular solute-binding protein M4S28_14570 PF00909 Ammonium Transporter Family M4S28_14575 PF00543 Nitrogen regulatory protein P-II M4S28_14580 PF06062 Uncharacterised protein family (UPF0231) M4S28_14585 PF00330 Aconitase family (aconitate hydratase) M4S28_14585 PF06434 Aconitate hydratase 2 N-terminus M4S28_14585 PF11791 Aconitate B N-terminal domain M4S28_14590 PF01734 Patatin-like phospholipase M4S28_14595 PF00905 Penicillin binding protein transpeptidase domain M4S28_14595 PF14814 Bifunctional transglycosylase second domain M4S28_14595 PF00912 Transglycosylase M4S28_14600 PF00271 Helicase conserved C-terminal domain M4S28_14600 PF00270 DEAD/DEAH box helicase M4S28_14600 PF08482 ATP-dependent helicase C-terminal M4S28_14600 PF04408 Helicase associated domain (HA2) M4S28_14605 PF17746 SfsA N-terminal OB domain M4S28_14605 PF03749 Sugar fermentation stimulation protein RE domain M4S28_14610 PF01258 Prokaryotic dksA/traR C4-type zinc finger M4S28_14615 PF00749 tRNA synthetases class I (E and Q), catalytic domain M4S28_14620 PF12627 Probable RNA and SrmB- binding site of polymerase A M4S28_14620 PF12626 Polymerase A arginine-rich C-terminus M4S28_14620 PF01743 Poly A polymerase head domain M4S28_14625 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) M4S28_14630 PF02548 Ketopantoate hydroxymethyltransferase M4S28_14635 PF02569 Pantoate-beta-alanine ligase M4S28_14640 PF01061 ABC-2 type transporter M4S28_14645 PF00005 ABC transporter M4S28_14650 PF00916 Sulfate permease family M4S28_14650 PF01740 STAS domain M4S28_14655 PF00484 Carbonic anhydrase M4S28_14660 PF00156 Phosphoribosyl transferase domain M4S28_14665 PF00440 Bacterial regulatory proteins, tetR family M4S28_14670 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M4S28_14670 PF07992 Pyridine nucleotide-disulphide oxidoreductase M4S28_14675 PF00364 Biotin-requiring enzyme M4S28_14675 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M4S28_14675 PF02817 e3 binding domain M4S28_14680 PF17831 Pyruvate dehydrogenase E1 component middle domain M4S28_14680 PF00456 Transketolase, thiamine diphosphate binding domain M4S28_14685 PF00392 Bacterial regulatory proteins, gntR family M4S28_14685 PF07729 FCD domain M4S28_14690 PF01510 N-acetylmuramoyl-L-alanine amidase M4S28_14695 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain M4S28_14695 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain M4S28_14700 PF07963 Prokaryotic N-terminal methylation motif M4S28_14700 PF00114 Pilin (bacterial filament) M4S28_14705 PF00437 Type II/IV secretion system protein M4S28_14705 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M4S28_14710 PF00482 Type II secretion system (T2SS), protein F M4S28_14715 PF06750 Bacterial Peptidase A24 N-terminal domain M4S28_14715 PF01478 Type IV leader peptidase family M4S28_14720 PF01121 Dephospho-CoA kinase M4S28_14725 PF07072 Cell division protein M4S28_14730 PF03884 DNA gyrase inhibitor YacG M4S28_14735 PF01245 Ribosomal protein L19 M4S28_14740 PF01746 tRNA (Guanine-1)-methyltransferase M4S28_14745 PF05239 PRC-barrel domain M4S28_14745 PF01782 RimM N-terminal domain M4S28_14750 PF00886 Ribosomal protein S16 M4S28_14755 PF02881 SRP54-type protein, helical bundle domain M4S28_14755 PF00448 SRP54-type protein, GTPase domain M4S28_14755 PF02978 Signal peptide binding domain M4S28_14760 PF01578 Cytochrome C assembly protein M4S28_14765 PF00571 CBS domain M4S28_14765 PF01595 Cyclin M transmembrane N-terminal domain M4S28_14765 PF03471 Transporter associated domain M4S28_14770 PF13006 Insertion element 4 transposase N-terminal M4S28_14770 PF01609 Transposase DDE domain M4S28_14775 PF02664 S-Ribosylhomocysteinase (LuxS) M4S28_14785 PF04262 Glutamate-cysteine ligase M4S28_14790 PF00675 Insulinase (Peptidase family M16) M4S28_14790 PF05193 Peptidase M16 inactive domain M4S28_14795 PF09335 SNARE associated Golgi protein M4S28_14800 PF08240 Alcohol dehydrogenase GroES-like domain M4S28_14800 PF00107 Zinc-binding dehydrogenase M4S28_14805 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit M4S28_14810 PF02436 Conserved carboxylase domain M4S28_14810 PF00682 HMGL-like M4S28_14810 PF00364 Biotin-requiring enzyme M4S28_14815 PF04277 Oxaloacetate decarboxylase, gamma chain M4S28_14870 PF02599 Global regulator protein family M4S28_14875 PF13840 ACT domain M4S28_14875 PF00696 Amino acid kinase family M4S28_14875 PF01842 ACT domain M4S28_14880 PF01411 tRNA synthetases class II (A) M4S28_14880 PF02272 DHHA1 domain M4S28_14880 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M4S28_14885 PF00154 recA bacterial DNA recombination protein M4S28_14920 PF11867 Domain of unknown function (DUF3387) M4S28_14920 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) M4S28_14920 PF18766 SWI2/SNF2 ATPase M4S28_14935 PF12161 HsdM N-terminal domain M4S28_14935 PF02384 N-6 DNA Methylase M4S28_14965 PF00154 recA bacterial DNA recombination protein M4S28_14975 PF02464 Competence-damaged protein M4S28_14980 PF05188 MutS domain II M4S28_14980 PF01624 MutS domain I M4S28_14980 PF00488 MutS domain V M4S28_14980 PF05192 MutS domain III M4S28_14980 PF05190 MutS family domain IV M4S28_14985 PF04545 Sigma-70, region 4 M4S28_14985 PF04539 Sigma-70 region 3 M4S28_14985 PF04542 Sigma-70 region 2 M4S28_14985 PF00140 Sigma-70 factor, region 1.2 M4S28_14990 PF01551 Peptidase family M23 M4S28_14990 PF01476 LysM domain M4S28_15000 PF01975 Survival protein SurE M4S28_15005 PF01142 tRNA pseudouridine synthase D (TruD) M4S28_15010 PF02542 YgbB family M4S28_15015 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase M4S28_15020 PF04977 Septum formation initiator M4S28_15025 PF03952 Enolase, N-terminal domain M4S28_15025 PF00113 Enolase, C-terminal TIM barrel domain M4S28_15030 PF00117 Glutamine amidotransferase class-I M4S28_15030 PF06418 CTP synthase N-terminus M4S28_15035 PF03819 MazG nucleotide pyrophosphohydrolase domain M4S28_15040 PF04607 Region found in RelA / SpoT proteins M4S28_15040 PF13291 ACT domain M4S28_15040 PF02824 TGS domain M4S28_15045 PF01938 TRAM domain M4S28_15045 PF05958 tRNA (Uracil-5-)-methyltransferase M4S28_15050 PF00672 HAMP domain M4S28_15050 PF01627 Hpt domain M4S28_15050 PF00072 Response regulator receiver domain M4S28_15050 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M4S28_15050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_15050 PF00512 His Kinase A (phospho-acceptor) domain M4S28_15055 PF01648 4'-phosphopantetheinyl transferase superfamily M4S28_15060 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ M4S28_15065 PF11967 Recombination protein O N terminal M4S28_15065 PF02565 Recombination protein O C terminal M4S28_15070 PF01926 50S ribosome-binding GTPase M4S28_15070 PF07650 KH domain M4S28_15075 PF14622 Ribonuclease-III-like M4S28_15075 PF00035 Double-stranded RNA binding motif M4S28_15080 PF10502 Signal peptidase, peptidase S26 M4S28_15085 PF00009 Elongation factor Tu GTP binding domain M4S28_15085 PF06421 GTP-binding protein LepA C-terminus M4S28_15085 PF03144 Elongation factor Tu domain 2 M4S28_15085 PF00679 Elongation factor G C-terminus M4S28_15095 PF17188 MucB/RseB C-terminal domain M4S28_15095 PF03888 MucB/RseB N-terminal domain M4S28_15100 PF03872 Anti sigma-E protein RseA, N-terminal domain M4S28_15100 PF03873 Anti sigma-E protein RseA, C-terminal domain M4S28_15105 PF08281 Sigma-70, region 4 M4S28_15105 PF04542 Sigma-70 region 2 M4S28_15110 PF02910 Fumarate reductase flavoprotein C-term M4S28_15110 PF00890 FAD binding domain M4S28_15115 PF03937 Flavinator of succinate dehydrogenase M4S28_15135 PF01494 FAD binding domain M4S28_15140 PF01494 FAD binding domain M4S28_15145 PF03695 Uncharacterised protein family (UPF0149) M4S28_15150 PF05164 Cell division protein ZapA M4S28_15160 PF01812 5-formyltetrahydrofolate cyclo-ligase family M4S28_15165 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) M4S28_15170 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M4S28_15170 PF01842 ACT domain M4S28_15170 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M4S28_15185 PF03466 LysR substrate binding domain M4S28_15185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_15190 PF01810 LysE type translocator M4S28_15195 PF05552 Conserved TM helix M4S28_15195 PF00924 Mechanosensitive ion channel M4S28_15200 PF01116 Fructose-bisphosphate aldolase class-II M4S28_15205 PF00162 Phosphoglycerate kinase M4S28_15210 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M4S28_15210 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M4S28_15215 PF02780 Transketolase, C-terminal domain M4S28_15215 PF00456 Transketolase, thiamine diphosphate binding domain M4S28_15215 PF02779 Transketolase, pyrimidine binding domain M4S28_15220 PF02772 S-adenosylmethionine synthetase, central domain M4S28_15220 PF02773 S-adenosylmethionine synthetase, C-terminal domain M4S28_15220 PF00438 S-adenosylmethionine synthetase, N-terminal domain M4S28_15230 PF17283 SprT-like zinc ribbon domain M4S28_15230 PF10263 SprT-like family M4S28_15235 PF04231 Endonuclease I M4S28_15240 PF04452 RNA methyltransferase M4S28_15245 PF02951 Prokaryotic glutathione synthetase, N-terminal domain M4S28_15245 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain M4S28_15250 PF02622 Uncharacterized ACR, COG1678 M4S28_15255 PF03652 Holliday junction resolvase M4S28_15265 PF00437 Type II/IV secretion system protein M4S28_15270 PF00437 Type II/IV secretion system protein M4S28_15275 PF01168 Alanine racemase, N-terminal domain M4S28_15280 PF14748 Pyrroline-5-carboxylate reductase dimerisation M4S28_15280 PF03807 NADP oxidoreductase coenzyme F420-dependent M4S28_15285 PF02325 YGGT family M4S28_15290 PF02594 Uncharacterised ACR, YggU family COG1872 M4S28_15365 PF05840 Bacteriophage replication gene A protein (GPA) M4S28_15410 PF01725 Ham1 family M4S28_15415 PF06969 HemN C-terminal domain M4S28_15415 PF04055 Radical SAM superfamily M4S28_15420 PF04960 Glutaminase M4S28_15425 PF02390 Putative methyltransferase M4S28_15430 PF00633 Helix-hairpin-helix motif M4S28_15430 PF14815 NUDIX domain M4S28_15430 PF00730 HhH-GPD superfamily base excision DNA repair protein M4S28_15435 PF04362 Bacterial Fe(2+) trafficking M4S28_15440 PF01464 Transglycosylase SLT domain M4S28_15440 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain M4S28_15480 PF17200 Single Cache domain 2 M4S28_15480 PF00672 HAMP domain M4S28_15480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M4S28_15570 PF00072 Response regulator receiver domain M4S28_15590 PF03739 Lipopolysaccharide export system permease LptF/LptG M4S28_15595 PF03739 Lipopolysaccharide export system permease LptF/LptG M4S28_15600 PF00883 Cytosol aminopeptidase family, catalytic domain M4S28_15600 PF02789 Cytosol aminopeptidase family, N-terminal domain M4S28_15605 PF04364 DNA polymerase III chi subunit, HolC M4S28_15610 PF00133 tRNA synthetases class I (I, L, M and V) M4S28_15610 PF08264 Anticodon-binding domain of tRNA M4S28_15610 PF10458 Valyl tRNA synthetase tRNA binding arm M4S28_15615 PF01435 Peptidase family M48 M4S28_15620 PF05987 Bacterial protein of unknown function (DUF898) M4S28_15630 PF00583 Acetyltransferase (GNAT) family M4S28_15640 PF06877 Regulator of ribonuclease activity B M4S28_15650 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M4S28_15650 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M4S28_15655 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M4S28_15655 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M4S28_15660 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain M4S28_15660 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain M4S28_15665 PF01042 Endoribonuclease L-PSP M4S28_15670 PF01553 Acyltransferase M4S28_15675 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M4S28_15680 PF01722 BolA-like protein M4S28_15690 PF05494 MlaC protein M4S28_15695 PF02470 MlaD protein M4S28_15700 PF02405 Permease MlaE M4S28_15705 PF00005 ABC transporter M4S28_15710 PF01699 Sodium/calcium exchanger protein M4S28_15715 PF01380 SIS domain M4S28_15715 PF00571 CBS domain M4S28_15730 PF03968 OstA-like protein M4S28_15735 PF12399 Branched-chain amino acid ATP-binding cassette transporter M4S28_15735 PF00005 ABC transporter M4S28_15740 PF04552 Sigma-54, DNA binding domain M4S28_15740 PF00309 Sigma-54 factor, Activator interacting domain (AID) M4S28_15740 PF04963 Sigma-54 factor, core binding domain M4S28_15745 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein M4S28_15750 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M4S28_15755 PF03668 P-loop ATPase protein family M4S28_15760 PF00381 PTS HPr component phosphorylation site M4S28_15765 PF03448 MgtE intracellular N domain M4S28_15765 PF01769 Divalent cation transporter M4S28_15765 PF00571 CBS domain M4S28_15770 PF01523 Putative modulator of DNA gyrase M4S28_15775 PF04751 Protein of unknown function (DUF615) M4S28_15780 PF00005 ABC transporter M4S28_15785 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_15795 PF02441 Flavoprotein M4S28_15800 PF02875 Mur ligase family, glutamate ligase domain M4S28_15800 PF01225 Mur ligase family, catalytic domain M4S28_15800 PF08245 Mur ligase middle domain M4S28_15805 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain M4S28_15810 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like M4S28_15815 PF04357 TamB, inner membrane protein subunit of TAM complex M4S28_15820 PF07244 Surface antigen variable number repeat M4S28_15820 PF01103 Surface antigen M4S28_15820 PF17243 POTRA domain TamA domain 1 M4S28_15825 PF01625 Peptide methionine sulfoxide reductase M4S28_15830 PF06526 Protein of unknown function (DUF1107) M4S28_15835 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) M4S28_15840 PF10795 Protein of unknown function (DUF2607) M4S28_15850 PF00005 ABC transporter M4S28_15875 PF03600 Citrate transporter M4S28_15875 PF02080 TrkA-C domain M4S28_15880 PF00009 Elongation factor Tu GTP binding domain M4S28_15885 PF01507 Phosphoadenosine phosphosulfate reductase family M4S28_15890 PF02872 5'-nucleotidase, C-terminal domain M4S28_15890 PF00149 Calcineurin-like phosphoesterase M4S28_15935 PF13673 Acetyltransferase (GNAT) domain M4S28_15945 PF04225 Opacity-associated protein A LysM-like domain M4S28_15945 PF08525 Opacity-associated protein A N-terminal motif M4S28_15950 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M4S28_15950 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M4S28_15960 PF01196 Ribosomal protein L17 M4S28_15965 PF01000 RNA polymerase Rpb3/RpoA insert domain M4S28_15965 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain M4S28_15965 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain M4S28_15970 PF01479 S4 domain M4S28_15970 PF00163 Ribosomal protein S4/S9 N-terminal domain M4S28_15975 PF00411 Ribosomal protein S11 M4S28_15980 PF00416 Ribosomal protein S13/S18 M4S28_15985 PF00444 Ribosomal protein L36 M4S28_15990 PF00344 SecY translocase M4S28_15995 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A M4S28_16000 PF00327 Ribosomal protein L30p/L7e M4S28_16005 PF03719 Ribosomal protein S5, C-terminal domain M4S28_16005 PF00333 Ribosomal protein S5, N-terminal domain M4S28_16010 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast M4S28_16015 PF00347 Ribosomal protein L6 M4S28_16020 PF00410 Ribosomal protein S8 M4S28_16025 PF00253 Ribosomal protein S14p/S29e M4S28_16030 PF00673 ribosomal L5P family C-terminus M4S28_16030 PF00281 Ribosomal protein L5 M4S28_16035 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 M4S28_16035 PF00467 KOW motif M4S28_16040 PF00238 Ribosomal protein L14p/L23e M4S28_16045 PF00366 Ribosomal protein S17 M4S28_16050 PF00831 Ribosomal L29 protein M4S28_16055 PF00252 Ribosomal protein L16p/L10e M4S28_16060 PF00189 Ribosomal protein S3, C-terminal domain M4S28_16060 PF07650 KH domain M4S28_16065 PF00237 Ribosomal protein L22p/L17e M4S28_16070 PF00203 Ribosomal protein S19 M4S28_16075 PF03947 Ribosomal Proteins L2, C-terminal domain M4S28_16075 PF00181 Ribosomal Proteins L2, RNA binding domain M4S28_16080 PF00276 Ribosomal protein L23 M4S28_16085 PF00573 Ribosomal protein L4/L1 family M4S28_16090 PF00297 Ribosomal protein L3 M4S28_16095 PF00338 Ribosomal protein S10p/S20e M4S28_16100 PF03144 Elongation factor Tu domain 2 M4S28_16100 PF00009 Elongation factor Tu GTP binding domain M4S28_16100 PF03143 Elongation factor Tu C-terminal domain M4S28_16105 PF14492 Elongation Factor G, domain II M4S28_16105 PF00009 Elongation factor Tu GTP binding domain M4S28_16105 PF00679 Elongation factor G C-terminus M4S28_16105 PF03144 Elongation factor Tu domain 2 M4S28_16105 PF03764 Elongation factor G, domain IV M4S28_16110 PF00177 Ribosomal protein S7p/S5e M4S28_16125 PF02635 DsrE/DsrF-like family M4S28_16130 PF02635 DsrE/DsrF-like family M4S28_16135 PF08348 YheO-like PAS domain M4S28_16135 PF13309 HTH domain M4S28_16140 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M4S28_16140 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M4S28_16150 PF04102 SlyX M4S28_16155 PF01112 Asparaginase M4S28_16160 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M4S28_16170 PF02254 TrkA-N domain M4S28_16170 PF00999 Sodium/hydrogen exchanger family M4S28_16175 PF02525 Flavodoxin-like fold M4S28_16180 PF12848 ABC transporter M4S28_16180 PF00005 ABC transporter M4S28_16190 PF00561 alpha/beta hydrolase fold M4S28_16195 PF06794 Uncharacterised protein family (UPF0270) M4S28_16200 PF00485 Phosphoribulokinase / Uridine kinase family M4S28_16205 PF13545 Crp-like helix-turn-helix domain M4S28_16205 PF00027 Cyclic nucleotide-binding domain M4S28_16215 PF00171 Aldehyde dehydrogenase family M4S28_16220 PF04958 Arginine N-succinyltransferase beta subunit M4S28_16225 PF00202 Aminotransferase class-III M4S28_16230 PF00117 Glutamine amidotransferase class-I M4S28_16240 PF00579 tRNA synthetases class I (W and Y) M4S28_16245 PF13419 Haloacid dehalogenase-like hydrolase M4S28_16250 PF00834 Ribulose-phosphate 3 epimerase family M4S28_16255 PF02086 D12 class N6 adenine-specific DNA methyltransferase M4S28_16265 PF01761 3-dehydroquinate synthase M4S28_16270 PF01202 Shikimate kinase M4S28_16275 PF07660 Secretin and TonB N terminus short domain M4S28_16275 PF03958 Bacterial type II/III secretion system short domain M4S28_16275 PF00263 Bacterial type II and III secretion system protein M4S28_16275 PF11741 AMIN domain M4S28_16300 PF00905 Penicillin binding protein transpeptidase domain M4S28_16300 PF17092 Penicillin-binding protein OB-like domain M4S28_16300 PF00912 Transglycosylase M4S28_16305 PF03466 LysR substrate binding domain M4S28_16305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_16315 PF00462 Glutaredoxin M4S28_16315 PF08534 Redoxin M4S28_16320 PF07992 Pyridine nucleotide-disulphide oxidoreductase M4S28_16320 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M4S28_16325 PF01042 Endoribonuclease L-PSP M4S28_16335 PF14698 Argininosuccinate lyase C-terminal M4S28_16335 PF00206 Lyase M4S28_16335 PF00583 Acetyltransferase (GNAT) family M4S28_16340 PF00764 Arginosuccinate synthase M4S28_16345 PF00696 Amino acid kinase family M4S28_16350 PF02774 Semialdehyde dehydrogenase, dimerisation domain M4S28_16350 PF01118 Semialdehyde dehydrogenase, NAD binding domain M4S28_16355 PF07687 Peptidase dimerisation domain M4S28_16355 PF01546 Peptidase family M20/M25/M40 M4S28_16360 PF00311 Phosphoenolpyruvate carboxylase M4S28_16370 PF02219 Methylenetetrahydrofolate reductase M4S28_16375 PF00696 Amino acid kinase family M4S28_16375 PF00742 Homoserine dehydrogenase M4S28_16375 PF03447 Homoserine dehydrogenase, NAD binding domain M4S28_16380 PF01053 Cys/Met metabolism PLP-dependent enzyme M4S28_16385 PF01340 Met Apo-repressor, MetJ M4S28_16390 PF00390 Malic enzyme, N-terminal domain M4S28_16390 PF03949 Malic enzyme, NAD binding domain M4S28_16395 PF01197 Ribosomal protein L31 M4S28_16400 PF18319 PriA DNA helicase Cys-rich region (CRR) domain M4S28_16400 PF18074 Primosomal protein N C-terminal domain M4S28_16400 PF17764 3′ DNA-binding domain (3′BD) M4S28_16400 PF00270 DEAD/DEAH box helicase M4S28_16400 PF00271 Helicase conserved C-terminal domain M4S28_16405 PF00356 Bacterial regulatory proteins, lacI family M4S28_16415 PF00227 Proteasome subunit M4S28_16420 PF07724 AAA domain (Cdc48 subfamily) M4S28_16420 PF00004 ATPase family associated with various cellular activities (AAA) M4S28_16425 PF01040 UbiA prenyltransferase family M4S28_16430 PF03737 Aldolase/RraA M4S28_16470 PF07690 Major Facilitator Superfamily M4S28_16480 PF12833 Helix-turn-helix domain M4S28_16485 PF02311 AraC-like ligand binding domain M4S28_16485 PF12833 Helix-turn-helix domain M4S28_16500 PF02311 AraC-like ligand binding domain M4S28_16500 PF12833 Helix-turn-helix domain M4S28_16530 PF12706 Beta-lactamase superfamily domain M4S28_16535 PF02743 Cache domain M4S28_16535 PF00672 HAMP domain M4S28_16535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M4S28_16540 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M4S28_16540 PF12793 Sugar transport-related sRNA regulator N-term M4S28_16545 PF08443 RimK-like ATP-grasp domain M4S28_16545 PF18030 RimK PreATP-grasp domain M4S28_16550 PF08443 RimK-like ATP-grasp domain M4S28_16550 PF18030 RimK PreATP-grasp domain M4S28_16555 PF13006 Insertion element 4 transposase N-terminal M4S28_16555 PF01609 Transposase DDE domain M4S28_16575 PF13416 Bacterial extracellular solute-binding protein M4S28_16580 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_16585 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_16590 PF17912 MalK OB fold domain M4S28_16590 PF00005 ABC transporter M4S28_16595 PF03009 Glycerophosphoryl diester phosphodiesterase family M4S28_16615 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M4S28_16625 PF04399 Glutaredoxin 2, C terminal domain M4S28_16625 PF13417 Glutathione S-transferase, N-terminal domain M4S28_16630 PF03618 Kinase/pyrophosphorylase M4S28_16635 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain M4S28_16635 PF02896 PEP-utilising enzyme, TIM barrel domain M4S28_16635 PF00391 PEP-utilising enzyme, mobile domain M4S28_16645 PF01554 MatE M4S28_16650 PF13309 HTH domain M4S28_16650 PF08348 YheO-like PAS domain M4S28_16655 PF01042 Endoribonuclease L-PSP M4S28_16660 PF00375 Sodium:dicarboxylate symporter family M4S28_16665 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M4S28_16665 PF07992 Pyridine nucleotide-disulphide oxidoreductase M4S28_16675 PF00884 Sulfatase M4S28_16730 PF04013 Putative SAM-dependent RNA methyltransferase M4S28_16770 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 M4S28_16800 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase M4S28_16810 PF03466 LysR substrate binding domain M4S28_16810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_16815 PF13460 NAD(P)H-binding M4S28_16830 PF01638 HxlR-like helix-turn-helix M4S28_16835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_16835 PF03466 LysR substrate binding domain M4S28_16840 PF00106 short chain dehydrogenase M4S28_16850 PF03922 OmpW family M4S28_16855 PF00483 Nucleotidyl transferase M4S28_16860 PF03606 C4-dicarboxylate anaerobic carrier M4S28_16885 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_16890 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_16895 PF00005 ABC transporter M4S28_16910 PF02954 Bacterial regulatory protein, Fis family M4S28_16910 PF00158 Sigma-54 interaction domain M4S28_16910 PF00072 Response regulator receiver domain M4S28_16915 PF02743 Cache domain M4S28_16915 PF00512 His Kinase A (phospho-acceptor) domain M4S28_16915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_16920 PF13378 Enolase C-terminal domain-like M4S28_16920 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M4S28_16930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_16930 PF03466 LysR substrate binding domain M4S28_16945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M4S28_16945 PF00672 HAMP domain M4S28_16945 PF17200 Single Cache domain 2 M4S28_16955 PF03466 LysR substrate binding domain M4S28_16955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_16965 PF00672 HAMP domain M4S28_16965 PF02743 Cache domain M4S28_16965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M4S28_16980 PF00155 Aminotransferase class I and II M4S28_16980 PF00392 Bacterial regulatory proteins, gntR family M4S28_16985 PF13006 Insertion element 4 transposase N-terminal M4S28_16985 PF01609 Transposase DDE domain M4S28_16995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_16995 PF03466 LysR substrate binding domain M4S28_17000 PF07690 Major Facilitator Superfamily M4S28_17005 PF03222 Tryptophan/tyrosine permease family M4S28_17010 PF03825 Nucleoside H+ symporter M4S28_17015 PF03747 ADP-ribosylglycohydrolase M4S28_17020 PF00294 pfkB family carbohydrate kinase M4S28_17025 PF07690 Major Facilitator Superfamily M4S28_17030 PF00392 Bacterial regulatory proteins, gntR family M4S28_17030 PF07702 UTRA domain M4S28_17035 PF01047 MarR family M4S28_17040 PF02566 OsmC-like protein M4S28_17050 PF00171 Aldehyde dehydrogenase family M4S28_17060 PF12729 Four helix bundle sensory module for signal transduction M4S28_17060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M4S28_17060 PF00672 HAMP domain M4S28_17080 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M4S28_17090 PF12833 Helix-turn-helix domain M4S28_17095 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M4S28_17095 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M4S28_17095 PF02378 Phosphotransferase system, EIIC M4S28_17100 PF01238 Phosphomannose isomerase type I M4S28_17115 PF17912 MalK OB fold domain M4S28_17115 PF03459 TOBE domain M4S28_17115 PF00005 ABC transporter M4S28_17120 PF13419 Haloacid dehalogenase-like hydrolase M4S28_17135 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_17140 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_17145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_17145 PF03466 LysR substrate binding domain M4S28_17150 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M4S28_17155 PF00246 Zinc carboxypeptidase M4S28_17165 PF02810 SEC-C motif M4S28_17170 PF00893 Small Multidrug Resistance protein M4S28_17175 PF08240 Alcohol dehydrogenase GroES-like domain M4S28_17175 PF00107 Zinc-binding dehydrogenase M4S28_17180 PF00756 Putative esterase M4S28_17195 PF13344 Haloacid dehalogenase-like hydrolase M4S28_17195 PF00293 NUDIX domain M4S28_17200 PF00171 Aldehyde dehydrogenase family M4S28_17205 PF00158 Sigma-54 interaction domain M4S28_17205 PF02954 Bacterial regulatory protein, Fis family M4S28_17205 PF01590 GAF domain M4S28_17210 PF00672 HAMP domain M4S28_17210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M4S28_17215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_17215 PF03466 LysR substrate binding domain M4S28_17225 PF13443 Cro/C1-type HTH DNA-binding domain M4S28_17260 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system M4S28_17265 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system M4S28_17275 PF03605 Anaerobic c4-dicarboxylate membrane transporter M4S28_17280 PF13419 Haloacid dehalogenase-like hydrolase M4S28_17285 PF01966 HD domain M4S28_17305 PF03450 CO dehydrogenase flavoprotein C-terminal domain M4S28_17305 PF00941 FAD binding domain in molybdopterin dehydrogenase M4S28_17310 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase M4S28_17310 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain M4S28_17320 PF01979 Amidohydrolase family M4S28_17330 PF13693 Winged helix-turn-helix DNA-binding M4S28_17335 PF09039 Mu DNA binding, I gamma subdomain M4S28_17335 PF09299 Mu transposase, C-terminal M4S28_17335 PF02914 Bacteriophage Mu transposase M4S28_17335 PF02316 Mu DNA-binding domain M4S28_17340 PF09077 Mu B transposition protein, C terminal M4S28_17340 PF13401 AAA domain M4S28_17410 PF08765 Mor transcription activator family M4S28_17440 PF08461 Ribonuclease R winged-helix domain M4S28_17445 PF11985 Protein of unknown function (DUF3486) M4S28_17455 PF03237 Terminase-like family M4S28_17465 PF06074 Protein of unknown function (DUF935) M4S28_17480 PF10124 Mu-like prophage major head subunit gpT M4S28_17500 PF07030 Protein of unknown function (DUF1320) M4S28_17520 PF17482 Phage tail sheath C-terminal domain M4S28_17520 PF04984 Phage tail sheath protein subtilisin-like domain M4S28_17525 PF10618 Phage tail tube protein M4S28_17550 PF06890 Bacteriophage Mu Gp45 protein M4S28_17565 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) M4S28_17585 PF02627 Carboxymuconolactone decarboxylase family M4S28_17590 PF13411 MerR HTH family regulatory protein M4S28_17605 PF07690 Major Facilitator Superfamily M4S28_17605 PF00083 Sugar (and other) transporter M4S28_17615 PF04229 GrpB protein M4S28_17630 PF04115 Ureidoglycolate lyase M4S28_17635 PF03561 Allantoicase repeat M4S28_17640 PF01014 Uricase M4S28_17640 PF09349 OHCU decarboxylase M4S28_17650 PF00576 HIUase/Transthyretin family M4S28_17655 PF00860 Permease family M4S28_17660 PF00860 Permease family M4S28_17665 PF01979 Amidohydrolase family M4S28_17680 PF01979 Amidohydrolase family M4S28_17690 PF05161 MOFRL family M4S28_17690 PF13660 Domain of unknown function (DUF4147) M4S28_17695 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M4S28_17695 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M4S28_17700 PF01261 Xylose isomerase-like TIM barrel M4S28_17705 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M4S28_17705 PF00205 Thiamine pyrophosphate enzyme, central domain M4S28_17705 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M4S28_17710 PF01274 Malate synthase M4S28_17720 PF07681 DoxX M4S28_17725 PF01047 MarR family M4S28_17755 PF03466 LysR substrate binding domain M4S28_17755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_17760 PF00892 EamA-like transporter family M4S28_17805 PF13629 Pilus formation protein N terminal region M4S28_17805 PF04972 BON domain M4S28_17805 PF00263 Bacterial type II and III secretion system protein M4S28_17820 PF00437 Type II/IV secretion system protein M4S28_17875 PF11412 Disulphide bond corrector protein DsbC M4S28_17875 PF02683 Cytochrome C biogenesis protein transmembrane region M4S28_17890 PF12945 Flagellar protein YcgR M4S28_17890 PF07238 PilZ domain M4S28_17895 PF05362 Lon protease (S16) C-terminal proteolytic domain M4S28_17895 PF13654 AAA domain M4S28_17905 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M4S28_17905 PF00005 ABC transporter M4S28_17920 PF13280 WYL domain M4S28_17920 PF08279 HTH domain M4S28_17925 PF00356 Bacterial regulatory proteins, lacI family M4S28_17935 PF01263 Aldose 1-epimerase M4S28_17940 PF06165 Glycosyltransferase family 36 M4S28_17940 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain M4S28_17945 PF00005 ABC transporter M4S28_17945 PF17912 MalK OB fold domain M4S28_17945 PF03459 TOBE domain M4S28_17950 PF00232 Glycosyl hydrolase family 1 M4S28_17955 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_17960 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_17970 PF00356 Bacterial regulatory proteins, lacI family M4S28_17975 PF17200 Single Cache domain 2 M4S28_17975 PF00672 HAMP domain M4S28_17975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M4S28_17990 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain M4S28_17990 PF00326 Prolyl oligopeptidase family M4S28_17995 PF03466 LysR substrate binding domain M4S28_17995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_18000 PF02652 L-lactate permease M4S28_18005 PF01070 FMN-dependent dehydrogenase M4S28_18020 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_18025 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M4S28_18030 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M4S28_18030 PF00005 ABC transporter M4S28_18035 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M4S28_18035 PF00005 ABC transporter M4S28_18040 PF01554 MatE M4S28_18045 PF12833 Helix-turn-helix domain M4S28_18045 PF01497 Periplasmic binding protein M4S28_18050 PF00155 Aminotransferase class I and II M4S28_18065 PF17773 UPF0176 acylphosphatase like domain M4S28_18065 PF00581 Rhodanese-like domain M4S28_18085 PF01238 Phosphomannose isomerase type I M4S28_18090 PF07690 Major Facilitator Superfamily M4S28_18095 PF07730 Histidine kinase M4S28_18095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_18095 PF05231 MASE1 M4S28_18100 PF00072 Response regulator receiver domain M4S28_18100 PF00196 Bacterial regulatory proteins, luxR family M4S28_18105 PF07690 Major Facilitator Superfamily M4S28_18115 PF00563 EAL domain M4S28_18115 PF00990 Diguanylate cyclase, GGDEF domain M4S28_18115 PF03707 Bacterial signalling protein N terminal repeat M4S28_18125 PF05726 Pirin C-terminal cupin domain M4S28_18125 PF02678 Pirin M4S28_18130 PF06865 Pyrimidine/purine nucleoside phosphorylase M4S28_18140 PF00704 Glycosyl hydrolases family 18 M4S28_18140 PF08329 Chitinase A, N-terminal domain M4S28_18145 PF12697 Alpha/beta hydrolase family M4S28_18170 PF12852 Cupin M4S28_18170 PF12833 Helix-turn-helix domain M4S28_18190 PF01124 MAPEG family M4S28_18195 PF07670 Nucleoside recognition M4S28_18200 PF07670 Nucleoside recognition M4S28_18210 PF03600 Citrate transporter M4S28_18220 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M4S28_18220 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M4S28_18225 PF06029 AlkA N-terminal domain M4S28_18225 PF00730 HhH-GPD superfamily base excision DNA repair protein M4S28_18235 PF03466 LysR substrate binding domain M4S28_18235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_18245 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase M4S28_18250 PF05068 Mannitol repressor M4S28_18255 PF01232 Mannitol dehydrogenase Rossmann domain M4S28_18255 PF08125 Mannitol dehydrogenase C-terminal domain M4S28_18260 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M4S28_18260 PF02378 Phosphotransferase system, EIIC M4S28_18260 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M4S28_18270 PF00881 Nitroreductase family M4S28_18280 PF00258 Flavodoxin M4S28_18280 PF00753 Metallo-beta-lactamase superfamily M4S28_18280 PF00301 Rubredoxin M4S28_18285 PF18113 Rubredoxin binding C-terminal domain M4S28_18285 PF07992 Pyridine nucleotide-disulphide oxidoreductase M4S28_18290 PF03616 Sodium/glutamate symporter M4S28_18295 PF10928 Protein of unknown function (DUF2810) M4S28_18305 PF14552 Tautomerase enzyme M4S28_18315 PF04542 Sigma-70 region 2 M4S28_18315 PF04545 Sigma-70, region 4 M4S28_18320 PF12973 ChrR Cupin-like domain M4S28_18330 PF00875 DNA photolyase M4S28_18330 PF03441 FAD binding domain of DNA photolyase M4S28_18340 PF00106 short chain dehydrogenase M4S28_18345 PF01593 Flavin containing amine oxidoreductase M4S28_18380 PF00106 short chain dehydrogenase M4S28_18385 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) M4S28_18395 PF00155 Aminotransferase class I and II M4S28_18410 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 M4S28_18410 PF00367 phosphotransferase system, EIIB M4S28_18410 PF02378 Phosphotransferase system, EIIC M4S28_18440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_18440 PF00512 His Kinase A (phospho-acceptor) domain M4S28_18440 PF07689 KaiB domain M4S28_18445 PF00486 Transcriptional regulatory protein, C terminal M4S28_18445 PF00072 Response regulator receiver domain M4S28_18500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_18500 PF03466 LysR substrate binding domain M4S28_18510 PF07690 Major Facilitator Superfamily M4S28_18515 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M4S28_18525 PF07549 SecD/SecF GG Motif M4S28_18525 PF02355 Protein export membrane protein M4S28_18530 PF13721 SecD export protein N-terminal TM region M4S28_18530 PF07549 SecD/SecF GG Motif M4S28_18530 PF02355 Protein export membrane protein M4S28_18540 PF00675 Insulinase (Peptidase family M16) M4S28_18540 PF05193 Peptidase M16 inactive domain M4S28_18545 PF04397 LytTr DNA-binding domain M4S28_18545 PF00072 Response regulator receiver domain M4S28_18550 PF07694 5TMR of 5TMR-LYT M4S28_18550 PF06580 Histidine kinase M4S28_18565 PF02687 FtsX-like permease family M4S28_18565 PF12704 MacB-like periplasmic core domain M4S28_18570 PF00005 ABC transporter M4S28_18580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_18580 PF03466 LysR substrate binding domain M4S28_18595 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M4S28_18595 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M4S28_18610 PF01709 Transcriptional regulator M4S28_18620 PF01329 Pterin 4 alpha carbinolamine dehydratase M4S28_18625 PF00351 Biopterin-dependent aromatic amino acid hydroxylase M4S28_18630 PF13193 AMP-binding enzyme C-terminal domain M4S28_18630 PF00501 AMP-binding enzyme M4S28_18635 PF00696 Amino acid kinase family M4S28_18640 PF02798 Glutathione S-transferase, N-terminal domain M4S28_18640 PF14497 Glutathione S-transferase, C-terminal domain M4S28_18650 PF04209 homogentisate 1,2-dioxygenase M4S28_18655 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M4S28_18670 PF00005 ABC transporter M4S28_18670 PF08402 TOBE domain M4S28_18695 PF00392 Bacterial regulatory proteins, gntR family M4S28_18695 PF07702 UTRA domain M4S28_18700 PF01627 Hpt domain M4S28_18700 PF00512 His Kinase A (phospho-acceptor) domain M4S28_18700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_18700 PF00672 HAMP domain M4S28_18700 PF00072 Response regulator receiver domain M4S28_18700 PF17149 Periplasmic sensor domain found in signal transduction proteins M4S28_18710 PF08719 Domain of unknown function (DUF1768) M4S28_18710 PF00925 GTP cyclohydrolase II M4S28_18720 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M4S28_18720 PF00005 ABC transporter M4S28_18725 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M4S28_18725 PF00005 ABC transporter M4S28_18740 PF13614 AAA domain M4S28_18740 PF18607 ParA helix turn helix domain M4S28_18745 PF08775 ParB family M4S28_18745 PF02195 ParB-like nuclease domain M4S28_18750 PF13718 GNAT acetyltransferase 2 M4S28_18750 PF05127 Helicase M4S28_18760 PF00664 ABC transporter transmembrane region M4S28_18760 PF00005 ABC transporter M4S28_18760 PF03412 Peptidase C39 family M4S28_18775 PF00529 HlyD membrane-fusion protein of T1SS M4S28_18780 PF02954 Bacterial regulatory protein, Fis family M4S28_18780 PF00072 Response regulator receiver domain M4S28_18780 PF00158 Sigma-54 interaction domain M4S28_18785 PF02743 Cache domain M4S28_18785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_18785 PF00512 His Kinase A (phospho-acceptor) domain M4S28_18790 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region M4S28_18790 PF01243 Pyridoxamine 5'-phosphate oxidase M4S28_18795 PF00196 Bacterial regulatory proteins, luxR family M4S28_18795 PF00072 Response regulator receiver domain M4S28_18810 PF12833 Helix-turn-helix domain M4S28_18815 PF18327 Proline utilization A proline dehydrogenase N-terminal domain M4S28_18815 PF00171 Aldehyde dehydrogenase family M4S28_18815 PF14850 DNA-binding domain of Proline dehydrogenase M4S28_18815 PF01619 Proline dehydrogenase M4S28_18825 PF00474 Sodium:solute symporter family M4S28_18850 PF01037 Lrp/AsnC ligand binding domain M4S28_18855 PF04286 Protein of unknown function (DUF445) M4S28_18860 PF00664 ABC transporter transmembrane region M4S28_18860 PF00005 ABC transporter M4S28_18890 PF01544 CorA-like Mg2+ transporter protein M4S28_18895 PF08019 Phosphoethanolamine transferase EptA/EptB M4S28_18895 PF00884 Sulfatase M4S28_18915 PF01418 Helix-turn-helix domain, rpiR family M4S28_18915 PF01380 SIS domain M4S28_18915 PF02685 Glucokinase M4S28_18925 PF07969 Amidohydrolase family M4S28_18935 PF00474 Sodium:solute symporter family M4S28_18940 PF00294 pfkB family carbohydrate kinase M4S28_18945 PF01081 KDPG and KHG aldolase M4S28_18950 PF02838 Glycosyl hydrolase family 20, domain 2 M4S28_18950 PF00728 Glycosyl hydrolase family 20, catalytic domain M4S28_18955 PF02743 Cache domain M4S28_18955 PF00512 His Kinase A (phospho-acceptor) domain M4S28_18955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_18960 PF00158 Sigma-54 interaction domain M4S28_18960 PF00072 Response regulator receiver domain M4S28_18960 PF02954 Bacterial regulatory protein, Fis family M4S28_18975 PF01266 FAD dependent oxidoreductase M4S28_18980 PF04151 Bacterial pre-peptidase C-terminal domain M4S28_18980 PF04389 Peptidase family M28 M4S28_18985 PF07504 Fungalysin/Thermolysin Propeptide Motif M4S28_18985 PF04151 Bacterial pre-peptidase C-terminal domain M4S28_18985 PF03413 Peptidase propeptide and YPEB domain M4S28_18985 PF01447 Thermolysin metallopeptidase, catalytic domain M4S28_18985 PF02868 Thermolysin metallopeptidase, alpha-helical domain M4S28_18995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_18995 PF00512 His Kinase A (phospho-acceptor) domain M4S28_18995 PF00672 HAMP domain M4S28_19000 PF00072 Response regulator receiver domain M4S28_19000 PF00486 Transcriptional regulatory protein, C terminal M4S28_19010 PF00291 Pyridoxal-phosphate dependent enzyme M4S28_19015 PF01037 Lrp/AsnC ligand binding domain M4S28_19025 PF01546 Peptidase family M20/M25/M40 M4S28_19025 PF07687 Peptidase dimerisation domain M4S28_19030 PF03480 Bacterial extracellular solute-binding protein, family 7 M4S28_19040 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component M4S28_19045 PF01321 Creatinase/Prolidase N-terminal domain M4S28_19045 PF00557 Metallopeptidase family M24 M4S28_19050 PF00440 Bacterial regulatory proteins, tetR family M4S28_19050 PF13977 BetI-type transcriptional repressor, C-terminal M4S28_19055 PF00171 Aldehyde dehydrogenase family M4S28_19060 PF05199 GMC oxidoreductase M4S28_19060 PF00732 GMC oxidoreductase M4S28_19065 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M4S28_19070 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_19075 PF00005 ABC transporter M4S28_19075 PF00571 CBS domain M4S28_19080 PF01047 MarR family M4S28_19085 PF00171 Aldehyde dehydrogenase family M4S28_19095 PF00465 Iron-containing alcohol dehydrogenase M4S28_19105 PF00884 Sulfatase M4S28_19110 PF13186 Iron-sulfur cluster-binding domain M4S28_19110 PF04055 Radical SAM superfamily M4S28_19115 PF00440 Bacterial regulatory proteins, tetR family M4S28_19115 PF16925 Tetracyclin repressor-like, C-terminal domain M4S28_19150 PF02600 Disulfide bond formation protein DsbB M4S28_19155 PF01081 KDPG and KHG aldolase M4S28_19160 PF00294 pfkB family carbohydrate kinase M4S28_19165 PF00367 phosphotransferase system, EIIB M4S28_19165 PF02378 Phosphotransferase system, EIIC M4S28_19170 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M4S28_19170 PF13378 Enolase C-terminal domain-like M4S28_19180 PF00392 Bacterial regulatory proteins, gntR family M4S28_19180 PF07702 UTRA domain M4S28_19190 PF14602 Hexapeptide repeat of succinyl-transferase M4S28_19190 PF12464 Maltose acetyltransferase M4S28_19195 PF00962 Adenosine/AMP deaminase M4S28_19200 PF03466 LysR substrate binding domain M4S28_19200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_19205 PF04262 Glutamate-cysteine ligase M4S28_19210 PF00005 ABC transporter M4S28_19210 PF00664 ABC transporter transmembrane region M4S28_19215 PF00664 ABC transporter transmembrane region M4S28_19215 PF00005 ABC transporter M4S28_19230 PF08659 KR domain M4S28_19230 PF14765 Polyketide synthase dehydratase M4S28_19230 PF00550 Phosphopantetheine attachment site M4S28_19230 PF16197 Ketoacyl-synthetase C-terminal extension M4S28_19230 PF00109 Beta-ketoacyl synthase, N-terminal domain M4S28_19230 PF08240 Alcohol dehydrogenase GroES-like domain M4S28_19230 PF00698 Acyl transferase domain M4S28_19230 PF02801 Beta-ketoacyl synthase, C-terminal domain M4S28_19255 PF00809 Pterin binding enzyme M4S28_19255 PF02310 B12 binding domain M4S28_19255 PF02607 B12 binding domain M4S28_19255 PF02965 Vitamin B12 dependent methionine synthase, activation domain M4S28_19255 PF02574 Homocysteine S-methyltransferase M4S28_19270 PF00106 short chain dehydrogenase M4S28_19275 PF14864 Alkyl sulfatase C-terminal M4S28_19275 PF14863 Alkyl sulfatase dimerisation M4S28_19275 PF00753 Metallo-beta-lactamase superfamily M4S28_19280 PF03466 LysR substrate binding domain M4S28_19280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_19290 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M4S28_19315 PF00232 Glycosyl hydrolase family 1 M4S28_19320 PF00356 Bacterial regulatory proteins, lacI family M4S28_19325 PF12464 Maltose acetyltransferase M4S28_19325 PF14602 Hexapeptide repeat of succinyl-transferase M4S28_19335 PF01872 RibD C-terminal domain M4S28_19345 PF13091 PLD-like domain M4S28_19350 PF00881 Nitroreductase family M4S28_19365 PF04055 Radical SAM superfamily M4S28_19365 PF13186 Iron-sulfur cluster-binding domain M4S28_19370 PF03466 LysR substrate binding domain M4S28_19370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_19375 PF00884 Sulfatase M4S28_19385 PF07992 Pyridine nucleotide-disulphide oxidoreductase M4S28_19385 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M4S28_19390 PF00440 Bacterial regulatory proteins, tetR family M4S28_19395 PF00696 Amino acid kinase family M4S28_19400 PF13520 Amino acid permease M4S28_19405 PF04371 Porphyromonas-type peptidyl-arginine deiminase M4S28_19410 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M4S28_19410 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M4S28_19415 PF01042 Endoribonuclease L-PSP M4S28_19425 PF03466 LysR substrate binding domain M4S28_19425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_19440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_19440 PF03466 LysR substrate binding domain M4S28_19445 PF00106 short chain dehydrogenase M4S28_19450 PF16901 C-terminal domain of alpha-glycerophosphate oxidase M4S28_19450 PF01266 FAD dependent oxidoreductase M4S28_19455 PF00455 DeoR C terminal sensor domain M4S28_19455 PF08220 DeoR-like helix-turn-helix domain M4S28_19460 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M4S28_19460 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M4S28_19465 PF00230 Major intrinsic protein M4S28_19470 PF00664 ABC transporter transmembrane region M4S28_19470 PF00005 ABC transporter M4S28_19470 PF03412 Peptidase C39 family M4S28_19480 PF03412 Peptidase C39 family M4S28_19480 PF00005 ABC transporter M4S28_19480 PF00664 ABC transporter transmembrane region M4S28_19490 PF02794 RTX toxin acyltransferase family M4S28_19495 PF12146 Serine aminopeptidase, S33 M4S28_19495 PF11647 Membrane Localization Domain M4S28_19495 PF11713 Peptidase C80 family M4S28_19495 PF07634 RtxA repeat M4S28_19495 PF16671 Actin cross-linking domain M4S28_19505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_19505 PF03466 LysR substrate binding domain M4S28_19510 PF01758 Sodium Bile acid symporter family M4S28_19525 PF00440 Bacterial regulatory proteins, tetR family M4S28_19540 PF06224 Winged helix DNA-binding domain M4S28_19545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_19545 PF03466 LysR substrate binding domain M4S28_19555 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M4S28_19555 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M4S28_19585 PF00455 DeoR C terminal sensor domain M4S28_19585 PF08220 DeoR-like helix-turn-helix domain M4S28_19590 PF03611 PTS system sugar-specific permease component M4S28_19595 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M4S28_19600 PF00596 Class II Aldolase and Adducin N-terminal domain M4S28_19610 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family M4S28_19615 PF01261 Xylose isomerase-like TIM barrel M4S28_19625 PF13419 Haloacid dehalogenase-like hydrolase M4S28_19630 PF00834 Ribulose-phosphate 3 epimerase family M4S28_19640 PF07690 Major Facilitator Superfamily M4S28_19650 PF01261 Xylose isomerase-like TIM barrel M4S28_19655 PF01614 Bacterial transcriptional regulator M4S28_19655 PF09339 IclR helix-turn-helix domain M4S28_19660 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family M4S28_19665 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M4S28_19665 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M4S28_19680 PF00596 Class II Aldolase and Adducin N-terminal domain M4S28_19685 PF03480 Bacterial extracellular solute-binding protein, family 7 M4S28_19690 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component M4S28_19695 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component M4S28_19700 PF02615 Malate/L-lactate dehydrogenase M4S28_19705 PF02595 Glycerate kinase family M4S28_19710 PF00199 Catalase M4S28_19710 PF06628 Catalase-related immune-responsive M4S28_19715 PF01734 Patatin-like phospholipase M4S28_19720 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M4S28_19720 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M4S28_19730 PF00175 Oxidoreductase NAD-binding domain M4S28_19730 PF00970 Oxidoreductase FAD-binding domain M4S28_19735 PF01553 Acyltransferase M4S28_19740 PF04816 tRNA (adenine(22)-N(1))-methyltransferase M4S28_19750 PF00128 Alpha amylase, catalytic domain M4S28_19750 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) M4S28_19755 PF02264 LamB porin M4S28_19765 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) M4S28_19765 PF11852 Domain of unknown function (DUF3372) M4S28_19765 PF03714 Bacterial pullanase-associated domain M4S28_19765 PF18494 Pullulanase Ins domain M4S28_19765 PF17967 Pullulanase N2 domain M4S28_19770 PF16657 Maltogenic Amylase, C-terminal domain M4S28_19770 PF02903 Alpha amylase, N-terminal ig-like domain M4S28_19770 PF00128 Alpha amylase, catalytic domain M4S28_19780 PF01810 LysE type translocator M4S28_19785 PF01037 Lrp/AsnC ligand binding domain M4S28_19790 PF03466 LysR substrate binding domain M4S28_19790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_19795 PF13442 Cytochrome C oxidase, cbb3-type, subunit III M4S28_19805 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M4S28_19805 PF00384 Molybdopterin oxidoreductase M4S28_19805 PF01568 Molydopterin dinucleotide binding domain M4S28_19810 PF03916 Polysulphide reductase, NrfD M4S28_19815 PF13247 4Fe-4S dicluster domain M4S28_19820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_19820 PF00512 His Kinase A (phospho-acceptor) domain M4S28_19825 PF00196 Bacterial regulatory proteins, luxR family M4S28_19825 PF00072 Response regulator receiver domain M4S28_19835 PF00375 Sodium:dicarboxylate symporter family M4S28_19840 PF03193 RsgA GTPase M4S28_19850 PF02630 SCO1/SenC M4S28_19865 PF17874 MalT-like TPR region M4S28_19865 PF00196 Bacterial regulatory proteins, luxR family M4S28_19870 PF00343 Carbohydrate phosphorylase M4S28_19875 PF02446 4-alpha-glucanotransferase M4S28_19880 PF00128 Alpha amylase, catalytic domain M4S28_19880 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) M4S28_19880 PF02806 Alpha amylase, C-terminal all-beta domain M4S28_19890 PF13006 Insertion element 4 transposase N-terminal M4S28_19890 PF01609 Transposase DDE domain M4S28_19900 PF00005 ABC transporter M4S28_19900 PF12558 ATP-binding cassette cobalt transporter M4S28_19905 PF07155 ECF-type riboflavin transporter, S component M4S28_19910 PF00529 HlyD membrane-fusion protein of T1SS M4S28_19910 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M4S28_19915 PF11742 Protein of unknown function (DUF3302) M4S28_19925 PF00990 Diguanylate cyclase, GGDEF domain M4S28_19940 PF01048 Phosphorylase superfamily M4S28_19945 PF03734 L,D-transpeptidase catalytic domain M4S28_19945 PF17969 L,D-transpeptidase C-terminal domain M4S28_19945 PF01476 LysM domain M4S28_19955 PF00270 DEAD/DEAH box helicase M4S28_19955 PF00271 Helicase conserved C-terminal domain M4S28_19960 PF00657 GDSL-like Lipase/Acylhydrolase M4S28_19965 PF00561 alpha/beta hydrolase fold M4S28_19970 PF03280 Proteobacterial lipase chaperone protein M4S28_19975 PF17200 Single Cache domain 2 M4S28_19975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M4S28_19975 PF00672 HAMP domain M4S28_19980 PF12849 PBP superfamily domain M4S28_19985 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_19990 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_19995 PF00005 ABC transporter M4S28_20020 PF07584 Aerotolerance regulator N-terminal M4S28_20020 PF00092 von Willebrand factor type A domain M4S28_20025 PF07584 Aerotolerance regulator N-terminal M4S28_20025 PF00092 von Willebrand factor type A domain M4S28_20035 PF01882 Protein of unknown function DUF58 M4S28_20040 PF07726 ATPase family associated with various cellular activities (AAA) M4S28_20040 PF17863 AAA lid domain M4S28_20045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M4S28_20045 PF00672 HAMP domain M4S28_20045 PF02743 Cache domain M4S28_20055 PF00005 ABC transporter M4S28_20055 PF08402 TOBE domain M4S28_20060 PF01547 Bacterial extracellular solute-binding protein M4S28_20065 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_20065 PF14785 Maltose transport system permease protein MalF P2 domain M4S28_20070 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_20080 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M4S28_20080 PF12793 Sugar transport-related sRNA regulator N-term M4S28_20095 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M4S28_20110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_20110 PF03466 LysR substrate binding domain M4S28_20125 PF04231 Endonuclease I M4S28_20135 PF02687 FtsX-like permease family M4S28_20135 PF12704 MacB-like periplasmic core domain M4S28_20140 PF00005 ABC transporter M4S28_20165 PF02872 5'-nucleotidase, C-terminal domain M4S28_20165 PF00149 Calcineurin-like phosphoesterase M4S28_20170 PF00005 ABC transporter M4S28_20180 PF01032 FecCD transport family M4S28_20195 PF02310 B12 binding domain M4S28_20195 PF04055 Radical SAM superfamily M4S28_20210 PF07694 5TMR of 5TMR-LYT M4S28_20210 PF00990 Diguanylate cyclase, GGDEF domain M4S28_20250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_20250 PF03466 LysR substrate binding domain M4S28_20255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_20255 PF00072 Response regulator receiver domain M4S28_20260 PF17327 Acyl homoserine lactone synthase M4S28_20265 PF04151 Bacterial pre-peptidase C-terminal domain M4S28_20265 PF01752 Collagenase M4S28_20265 PF08453 Peptidase family M9 N-terminal M4S28_20280 PF00463 Isocitrate lyase family M4S28_20285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_20285 PF03466 LysR substrate binding domain M4S28_20290 PF01274 Malate synthase M4S28_20295 PF00171 Aldehyde dehydrogenase family M4S28_20300 PF01614 Bacterial transcriptional regulator M4S28_20300 PF09339 IclR helix-turn-helix domain M4S28_20305 PF01515 Phosphate acetyl/butaryl transferase M4S28_20310 PF01925 Sulfite exporter TauE/SafE M4S28_20315 PF06213 Cobalamin biosynthesis protein CobT M4S28_20315 PF11775 Cobalamin biosynthesis protein CobT VWA domain M4S28_20320 PF08406 CbbQ/NirQ/NorQ C-terminal M4S28_20320 PF12556 Cobaltochelatase CobS subunit N terminal M4S28_20320 PF07728 AAA domain (dynein-related subfamily) M4S28_20325 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M4S28_20325 PF00205 Thiamine pyrophosphate enzyme, central domain M4S28_20325 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M4S28_20340 PF01266 FAD dependent oxidoreductase M4S28_20345 PF03480 Bacterial extracellular solute-binding protein, family 7 M4S28_20350 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component M4S28_20355 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component M4S28_20355 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component M4S28_20370 PF02028 BCCT, betaine/carnitine/choline family transporter M4S28_20380 PF17151 Periplasmic sensor domain M4S28_20380 PF00990 Diguanylate cyclase, GGDEF domain M4S28_20385 PF01979 Amidohydrolase family M4S28_20395 PF03473 MOSC domain M4S28_20395 PF00111 2Fe-2S iron-sulfur cluster binding domain M4S28_20395 PF03476 MOSC N-terminal beta barrel domain M4S28_20400 PF02540 NAD synthase M4S28_20405 PF01467 Cytidylyltransferase-like M4S28_20445 PF00005 ABC transporter M4S28_20450 PF01032 FecCD transport family M4S28_20460 PF02472 Biopolymer transport protein ExbD/TolR M4S28_20465 PF01618 MotA/TolQ/ExbB proton channel family M4S28_20470 PF03544 Gram-negative bacterial TonB protein C-terminal M4S28_20475 PF04055 Radical SAM superfamily M4S28_20480 PF06228 Haem utilisation ChuX/HutX M4S28_20485 PF01243 Pyridoxamine 5'-phosphate oxidase M4S28_20490 PF01923 Cobalamin adenosyltransferase M4S28_20495 PF00072 Response regulator receiver domain M4S28_20495 PF01584 CheW-like domain M4S28_20505 PF00128 Alpha amylase, catalytic domain M4S28_20510 PF02743 Cache domain M4S28_20510 PF00672 HAMP domain M4S28_20510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M4S28_20515 PF07670 Nucleoside recognition M4S28_20540 PF01551 Peptidase family M23 M4S28_20540 PF08525 Opacity-associated protein A N-terminal motif M4S28_20540 PF01476 LysM domain M4S28_20545 PF08447 PAS fold M4S28_20545 PF00990 Diguanylate cyclase, GGDEF domain M4S28_20545 PF08448 PAS fold M4S28_20545 PF00563 EAL domain M4S28_20550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_20550 PF03466 LysR substrate binding domain M4S28_20555 PF07690 Major Facilitator Superfamily M4S28_20565 PF00462 Glutaredoxin M4S28_20570 PF00892 EamA-like transporter family M4S28_20585 PF06965 Na+/H+ antiporter 1 M4S28_20585 PF13462 Thioredoxin M4S28_20590 PF00085 Thioredoxin M4S28_20595 PF11412 Disulphide bond corrector protein DsbC M4S28_20595 PF02683 Cytochrome C biogenesis protein transmembrane region M4S28_20610 PF00924 Mechanosensitive ion channel M4S28_20610 PF05552 Conserved TM helix M4S28_20650 PF03412 Peptidase C39 family M4S28_20650 PF00005 ABC transporter M4S28_20650 PF00664 ABC transporter transmembrane region M4S28_20660 PF02321 Outer membrane efflux protein M4S28_20680 PF00248 Aldo/keto reductase family M4S28_20685 PF00270 DEAD/DEAH box helicase M4S28_20685 PF00271 Helicase conserved C-terminal domain M4S28_20685 PF03880 DbpA RNA binding domain M4S28_20700 PF11490 DNA polymerase III polC-type N-terminus II M4S28_20700 PF02811 PHP domain M4S28_20700 PF14579 Helix-hairpin-helix motif M4S28_20700 PF00929 Exonuclease M4S28_20700 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M4S28_20700 PF07733 Bacterial DNA polymerase III alpha NTPase domain M4S28_20710 PF00271 Helicase conserved C-terminal domain M4S28_20710 PF00270 DEAD/DEAH box helicase M4S28_20715 PF00881 Nitroreductase family M4S28_20735 PF00037 4Fe-4S binding domain M4S28_20735 PF11953 Domain of unknown function (DUF3470) M4S28_20740 PF00588 SpoU rRNA Methylase family M4S28_20740 PF08032 RNA 2'-O ribose methyltransferase substrate binding M4S28_20745 PF00248 Aldo/keto reductase family M4S28_20755 PF07687 Peptidase dimerisation domain M4S28_20755 PF01546 Peptidase family M20/M25/M40 M4S28_20770 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M4S28_20775 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M4S28_20780 PF00873 AcrB/AcrD/AcrF family M4S28_20785 PF01575 MaoC like domain M4S28_20790 PF12849 PBP superfamily domain M4S28_20800 PF12833 Helix-turn-helix domain M4S28_20805 PF17876 Cold shock domain M4S28_20805 PF08206 Ribonuclease B OB domain M4S28_20805 PF00773 RNB domain M4S28_20805 PF00575 S1 RNA binding domain M4S28_20810 PF03880 DbpA RNA binding domain M4S28_20810 PF00270 DEAD/DEAH box helicase M4S28_20810 PF00271 Helicase conserved C-terminal domain M4S28_20815 PF00871 Acetokinase family M4S28_20825 PF00571 CBS domain M4S28_20825 PF00291 Pyridoxal-phosphate dependent enzyme M4S28_20830 PF01381 Helix-turn-helix M4S28_20830 PF07883 Cupin domain M4S28_20835 PF03594 Benzoate membrane transport protein M4S28_20855 PF08240 Alcohol dehydrogenase GroES-like domain M4S28_20855 PF00107 Zinc-binding dehydrogenase M4S28_20870 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain M4S28_20870 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain M4S28_20875 PF04183 IucA / IucC family M4S28_20875 PF06276 Ferric iron reductase FhuF-like transporter M4S28_20885 PF04183 IucA / IucC family M4S28_20885 PF06276 Ferric iron reductase FhuF-like transporter M4S28_20890 PF00206 Lyase M4S28_20890 PF02655 ATP-grasp domain M4S28_20895 PF00593 TonB dependent receptor M4S28_20895 PF07715 TonB-dependent Receptor Plug Domain M4S28_20900 PF07660 Secretin and TonB N terminus short domain M4S28_20900 PF00593 TonB dependent receptor M4S28_20900 PF07715 TonB-dependent Receptor Plug Domain M4S28_20905 PF01497 Periplasmic binding protein M4S28_20910 PF01032 FecCD transport family M4S28_20915 PF01032 FecCD transport family M4S28_20920 PF00005 ABC transporter M4S28_20930 PF00892 EamA-like transporter family M4S28_20935 PF00128 Alpha amylase, catalytic domain M4S28_20940 PF01494 FAD binding domain M4S28_20945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_20945 PF03466 LysR substrate binding domain M4S28_20950 PF01554 MatE M4S28_20980 PF00478 IMP dehydrogenase / GMP reductase domain M4S28_20985 PF00589 Phage integrase family M4S28_20995 PF00145 C-5 cytosine-specific DNA methylase M4S28_21025 PF06892 Phage regulatory protein CII (CP76) M4S28_21060 PF05840 Bacteriophage replication gene A protein (GPA) M4S28_21085 PF01043 SecA preprotein cross-linking domain M4S28_21085 PF07517 SecA DEAD-like domain M4S28_21085 PF02810 SEC-C motif M4S28_21085 PF07516 SecA Wing and Scaffold domain M4S28_21235 PF00145 C-5 cytosine-specific DNA methylase M4S28_21250 PF13417 Glutathione S-transferase, N-terminal domain M4S28_21250 PF00043 Glutathione S-transferase, C-terminal domain M4S28_21275 PF00892 EamA-like transporter family M4S28_21280 PF08543 Phosphomethylpyrimidine kinase M4S28_21285 PF00005 ABC transporter M4S28_21290 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_21295 PF09084 NMT1/THI5 like M4S28_21300 PF03070 TENA/THI-4/PQQC family M4S28_21305 PF02110 Hydroxyethylthiazole kinase family M4S28_21310 PF02743 Cache domain M4S28_21310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M4S28_21310 PF00672 HAMP domain M4S28_21315 PF02581 Thiamine monophosphate synthase M4S28_21325 PF03466 LysR substrate binding domain M4S28_21325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_21335 PF12833 Helix-turn-helix domain M4S28_21335 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term M4S28_21340 PF01979 Amidohydrolase family M4S28_21365 PF07694 5TMR of 5TMR-LYT M4S28_21365 PF00990 Diguanylate cyclase, GGDEF domain M4S28_21375 PF13533 Biotin-lipoyl like M4S28_21385 PF01594 AI-2E family transporter M4S28_21415 PF01497 Periplasmic binding protein M4S28_21420 PF01032 FecCD transport family M4S28_21425 PF01032 FecCD transport family M4S28_21430 PF00005 ABC transporter M4S28_21435 PF00072 Response regulator receiver domain M4S28_21440 PF00672 HAMP domain M4S28_21440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_21440 PF00512 His Kinase A (phospho-acceptor) domain M4S28_21440 PF01627 Hpt domain M4S28_21440 PF17149 Periplasmic sensor domain found in signal transduction proteins M4S28_21440 PF00072 Response regulator receiver domain M4S28_21445 PF03466 LysR substrate binding domain M4S28_21445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_21450 PF07690 Major Facilitator Superfamily M4S28_21455 PF05547 Immune inhibitor A peptidase M6 M4S28_21455 PF00801 PKD domain M4S28_21470 PF01037 Lrp/AsnC ligand binding domain M4S28_21475 PF08447 PAS fold M4S28_21475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M4S28_21480 PF02780 Transketolase, C-terminal domain M4S28_21480 PF02779 Transketolase, pyrimidine binding domain M4S28_21480 PF00456 Transketolase, thiamine diphosphate binding domain M4S28_21485 PF00923 Transaldolase/Fructose-6-phosphate aldolase M4S28_21500 PF00665 Integrase core domain M4S28_21505 PF01695 IstB-like ATP binding protein M4S28_21510 PF03466 LysR substrate binding domain M4S28_21510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_21530 PF13629 Pilus formation protein N terminal region M4S28_21530 PF00263 Bacterial type II and III secretion system protein M4S28_21530 PF04972 BON domain M4S28_21545 PF00437 Type II/IV secretion system protein M4S28_21585 PF01590 GAF domain M4S28_21585 PF00563 EAL domain M4S28_21585 PF00360 Phytochrome region M4S28_21585 PF00990 Diguanylate cyclase, GGDEF domain M4S28_21590 PF00581 Rhodanese-like domain M4S28_21610 PF00899 ThiF family M4S28_21615 PF00994 Probable molybdopterin binding domain M4S28_21615 PF03453 MoeA N-terminal region (domain I and II) M4S28_21615 PF03454 MoeA C-terminal region (domain IV) M4S28_21620 PF01227 GTP cyclohydrolase I M4S28_21630 PF07152 YaeQ protein M4S28_21670 PF04984 Phage tail sheath protein subtilisin-like domain M4S28_21670 PF17482 Phage tail sheath C-terminal domain M4S28_21770 PF07157 DNA circularisation protein N-terminus M4S28_21825 PF06892 Phage regulatory protein CII (CP76) M4S28_21860 PF02899 Phage integrase, N-terminal SAM-like domain M4S28_21860 PF00589 Phage integrase family M4S28_21865 PF00313 'Cold-shock' DNA-binding domain M4S28_21870 PF07995 Glucose / Sorbosone dehydrogenase M4S28_21875 PF07690 Major Facilitator Superfamily M4S28_21880 PF00005 ABC transporter M4S28_21890 PF12833 Helix-turn-helix domain M4S28_21895 PF07715 TonB-dependent Receptor Plug Domain M4S28_21895 PF00593 TonB dependent receptor M4S28_21905 PF01032 FecCD transport family M4S28_21910 PF00378 Enoyl-CoA hydratase/isomerase M4S28_21925 PF00155 Aminotransferase class I and II M4S28_21930 PF06826 Predicted Permease Membrane Region M4S28_21930 PF02080 TrkA-C domain M4S28_21940 PF13533 Biotin-lipoyl like M4S28_21945 PF00873 AcrB/AcrD/AcrF family M4S28_21955 PF02253 Phospholipase A1 M4S28_21960 PF00486 Transcriptional regulatory protein, C terminal M4S28_21960 PF18500 CadC C-terminal domain 1 M4S28_21970 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M4S28_21975 PF00132 Bacterial transferase hexapeptide (six repeats) M4S28_21985 PF00664 ABC transporter transmembrane region M4S28_21985 PF00005 ABC transporter M4S28_21990 PF00529 HlyD membrane-fusion protein of T1SS M4S28_21990 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M4S28_22010 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M4S28_22015 PF00873 AcrB/AcrD/AcrF family M4S28_22050 PF08274 PhnA Zinc-Ribbon M4S28_22050 PF03831 PhnA domain M4S28_22075 PF12833 Helix-turn-helix domain M4S28_22075 PF02311 AraC-like ligand binding domain M4S28_22080 PF04886 PT repeat M4S28_22080 PF00593 TonB dependent receptor M4S28_22080 PF07715 TonB-dependent Receptor Plug Domain M4S28_22090 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_22095 PF00497 Bacterial extracellular solute-binding proteins, family 3 M4S28_22100 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_22105 PF00005 ABC transporter M4S28_22110 PF00465 Iron-containing alcohol dehydrogenase M4S28_22115 PF06719 AraC-type transcriptional regulator N-terminus M4S28_22115 PF12833 Helix-turn-helix domain M4S28_22135 PF01042 Endoribonuclease L-PSP M4S28_22150 PF00132 Bacterial transferase hexapeptide (six repeats) M4S28_22150 PF14602 Hexapeptide repeat of succinyl-transferase M4S28_22150 PF12464 Maltose acetyltransferase M4S28_22170 PF04224 Protein of unknown function, DUF417 M4S28_22175 PF01042 Endoribonuclease L-PSP M4S28_22180 PF02028 BCCT, betaine/carnitine/choline family transporter M4S28_22190 PF00704 Glycosyl hydrolases family 18 M4S28_22190 PF06483 Chitinase C M4S28_22195 PF00990 Diguanylate cyclase, GGDEF domain M4S28_22195 PF07694 5TMR of 5TMR-LYT M4S28_22210 PF07943 Penicillin-binding protein 5, C-terminal domain M4S28_22210 PF00768 D-alanyl-D-alanine carboxypeptidase M4S28_22220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_22220 PF03466 LysR substrate binding domain M4S28_22230 PF00849 RNA pseudouridylate synthase M4S28_22240 PF16884 N-terminal domain of oxidoreductase M4S28_22240 PF00107 Zinc-binding dehydrogenase M4S28_22245 PF16925 Tetracyclin repressor-like, C-terminal domain M4S28_22245 PF00440 Bacterial regulatory proteins, tetR family M4S28_22250 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M4S28_22250 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M4S28_22260 PF00691 OmpA family M4S28_22260 PF04972 BON domain M4S28_22270 PF01590 GAF domain M4S28_22270 PF00158 Sigma-54 interaction domain M4S28_22275 PF00042 Globin M4S28_22275 PF00175 Oxidoreductase NAD-binding domain M4S28_22275 PF00970 Oxidoreductase FAD-binding domain M4S28_22285 PF00654 Voltage gated chloride channel M4S28_22290 PF02492 CobW/HypB/UreG, nucleotide-binding domain M4S28_22290 PF07683 Cobalamin synthesis protein cobW C-terminal domain M4S28_22295 PF00270 DEAD/DEAH box helicase M4S28_22295 PF00271 Helicase conserved C-terminal domain M4S28_22300 PF01810 LysE type translocator M4S28_22325 PF00486 Transcriptional regulatory protein, C terminal M4S28_22325 PF00072 Response regulator receiver domain M4S28_22330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_22330 PF00512 His Kinase A (phospho-acceptor) domain M4S28_22345 PF01037 Lrp/AsnC ligand binding domain M4S28_22370 PF03264 NapC/NirT cytochrome c family, N-terminal region M4S28_22375 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) M4S28_22380 PF01568 Molydopterin dinucleotide binding domain M4S28_22380 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M4S28_22380 PF00384 Molybdopterin oxidoreductase M4S28_22390 PF12800 4Fe-4S binding domain M4S28_22390 PF00037 4Fe-4S binding domain M4S28_22390 PF13187 4Fe-4S dicluster domain M4S28_22395 PF00672 HAMP domain M4S28_22395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_22395 PF07730 Histidine kinase M4S28_22395 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term M4S28_22400 PF00072 Response regulator receiver domain M4S28_22400 PF00196 Bacterial regulatory proteins, luxR family M4S28_22405 PF03606 C4-dicarboxylate anaerobic carrier M4S28_22420 PF12262 Bacterial virulence factor lipase N-terminal M4S28_22425 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) M4S28_22430 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M4S28_22435 PF00873 AcrB/AcrD/AcrF family M4S28_22455 PF00392 Bacterial regulatory proteins, gntR family M4S28_22455 PF07702 UTRA domain M4S28_22460 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M4S28_22460 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M4S28_22460 PF02378 Phosphotransferase system, EIIC M4S28_22465 PF09261 Alpha mannosidase middle domain M4S28_22465 PF07748 Glycosyl hydrolases family 38 C-terminal domain M4S28_22465 PF01074 Glycosyl hydrolases family 38 N-terminal domain M4S28_22470 PF02595 Glycerate kinase family M4S28_22475 PF01238 Phosphomannose isomerase type I M4S28_22500 PF00990 Diguanylate cyclase, GGDEF domain M4S28_22500 PF05230 MASE2 domain M4S28_22505 PF01926 50S ribosome-binding GTPase M4S28_22510 PF01551 Peptidase family M23 M4S28_22510 PF01476 LysM domain M4S28_22510 PF08525 Opacity-associated protein A N-terminal motif M4S28_22535 PF00158 Sigma-54 interaction domain M4S28_22535 PF02954 Bacterial regulatory protein, Fis family M4S28_22535 PF01590 GAF domain M4S28_22540 PF10431 C-terminal, D2-small domain, of ClpB protein M4S28_22540 PF00004 ATPase family associated with various cellular activities (AAA) M4S28_22540 PF17871 AAA lid domain M4S28_22540 PF07724 AAA domain (Cdc48 subfamily) M4S28_22545 PF05638 Type VI secretion system effector, Hcp M4S28_22550 PF04717 Type VI secretion system, phage-baseplate injector M4S28_22575 PF03793 PASTA domain M4S28_22575 PF00069 Protein kinase domain M4S28_22590 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath M4S28_22600 PF05947 Type VI secretion system, TssF M4S28_22610 PF01037 Lrp/AsnC ligand binding domain M4S28_22640 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE M4S28_22695 PF00034 Cytochrome c M4S28_22700 PF00196 Bacterial regulatory proteins, luxR family M4S28_22735 PF01212 Beta-eliminating lyase M4S28_22740 PF00293 NUDIX domain M4S28_22745 PF17868 AAA lid domain M4S28_22745 PF12592 Protein of unknown function (DUF3763) M4S28_22745 PF07728 AAA domain (dynein-related subfamily) M4S28_22750 PF05762 VWA domain containing CoxE-like protein M4S28_22775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M4S28_22775 PF00672 HAMP domain M4S28_22825 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M4S28_22825 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M4S28_22825 PF07992 Pyridine nucleotide-disulphide oxidoreductase M4S28_22825 PF04324 BFD-like [2Fe-2S] binding domain M4S28_22825 PF18267 Rubredoxin NAD+ reductase C-terminal domain M4S28_22830 PF13806 Rieske-like [2Fe-2S] domain M4S28_22835 PF01226 Formate/nitrite transporter M4S28_22840 PF10414 Sirohaem synthase dimerisation region M4S28_22840 PF14824 Sirohaem biosynthesis protein central M4S28_22840 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M4S28_22855 PF00072 Response regulator receiver domain M4S28_22855 PF00486 Transcriptional regulatory protein, C terminal M4S28_22860 PF00512 His Kinase A (phospho-acceptor) domain M4S28_22860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_22860 PF00672 HAMP domain M4S28_22860 PF16527 Two-component sensor protein CpxA, periplasmic domain M4S28_22865 PF00375 Sodium:dicarboxylate symporter family M4S28_22870 PF07715 TonB-dependent Receptor Plug Domain M4S28_22870 PF00593 TonB dependent receptor M4S28_22880 PF01618 MotA/TolQ/ExbB proton channel family M4S28_22885 PF01618 MotA/TolQ/ExbB proton channel family M4S28_22890 PF02472 Biopolymer transport protein ExbD/TolR M4S28_22935 PF01297 Zinc-uptake complex component A periplasmic M4S28_22940 PF00005 ABC transporter M4S28_22945 PF00950 ABC 3 transport family M4S28_22965 PF11756 Nitrous oxide-stimulated promoter M4S28_22970 PF01554 MatE M4S28_22990 PF07690 Major Facilitator Superfamily M4S28_22995 PF12833 Helix-turn-helix domain M4S28_22995 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term M4S28_23000 PF00501 AMP-binding enzyme M4S28_23000 PF13193 AMP-binding enzyme C-terminal domain M4S28_23005 PF05199 GMC oxidoreductase M4S28_23005 PF00732 GMC oxidoreductase M4S28_23010 PF00085 Thioredoxin M4S28_23015 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M4S28_23015 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M4S28_23030 PF04143 Sulphur transport M4S28_23045 PF03477 ATP cone domain M4S28_23045 PF13597 Anaerobic ribonucleoside-triphosphate reductase M4S28_23055 PF01554 MatE M4S28_23060 PF12833 Helix-turn-helix domain M4S28_23065 PF00155 Aminotransferase class I and II M4S28_23070 PF18030 RimK PreATP-grasp domain M4S28_23070 PF08443 RimK-like ATP-grasp domain M4S28_23075 PF00005 ABC transporter M4S28_23075 PF12848 ABC transporter M4S28_23090 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain M4S28_23090 PF07685 CobB/CobQ-like glutamine amidotransferase domain M4S28_23100 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_23105 PF00005 ABC transporter M4S28_23105 PF03459 TOBE domain M4S28_23115 PF01590 GAF domain M4S28_23115 PF00990 Diguanylate cyclase, GGDEF domain M4S28_23115 PF00360 Phytochrome region M4S28_23115 PF00563 EAL domain M4S28_23125 PF17158 Membrane-associated sensor, integral membrane domain M4S28_23125 PF00990 Diguanylate cyclase, GGDEF domain M4S28_23140 PF01262 Alanine dehydrogenase/PNT, C-terminal domain M4S28_23140 PF05222 Alanine dehydrogenase/PNT, N-terminal domain M4S28_23140 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch M4S28_23145 PF02233 NAD(P) transhydrogenase beta subunit M4S28_23155 PF00072 Response regulator receiver domain M4S28_23155 PF00486 Transcriptional regulatory protein, C terminal M4S28_23170 PF03701 Uncharacterised protein family (UPF0181) M4S28_23175 PF00990 Diguanylate cyclase, GGDEF domain M4S28_23175 PF08448 PAS fold M4S28_23210 PF01253 Translation initiation factor SUI1 M4S28_23225 PF07478 D-ala D-ala ligase C-terminus M4S28_23225 PF01820 D-ala D-ala ligase N-terminus M4S28_23230 PF05036 Sporulation related domain M4S28_23235 PF13380 CoA binding domain M4S28_23235 PF13607 Succinyl-CoA ligase like flavodoxin domain M4S28_23235 PF00583 Acetyltransferase (GNAT) family M4S28_23240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_23240 PF03466 LysR substrate binding domain M4S28_23245 PF07715 TonB-dependent Receptor Plug Domain M4S28_23245 PF00593 TonB dependent receptor M4S28_23250 PF16363 GDP-mannose 4,6 dehydratase M4S28_23255 PF03707 Bacterial signalling protein N terminal repeat M4S28_23255 PF00990 Diguanylate cyclase, GGDEF domain M4S28_23255 PF00563 EAL domain M4S28_23265 PF07715 TonB-dependent Receptor Plug Domain M4S28_23265 PF00593 TonB dependent receptor M4S28_23270 PF03746 LamB/YcsF family M4S28_23275 PF02682 Carboxyltransferase domain, subdomain C and D M4S28_23280 PF02626 Carboxyltransferase domain, subdomain A and B M4S28_23295 PF00005 ABC transporter M4S28_23300 PF13472 GDSL-like Lipase/Acylhydrolase family M4S28_23305 PF12241 Trans-2-enoyl-CoA reductase catalytic region M4S28_23305 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase M4S28_23305 PF07055 Enoyl reductase FAD binding domain M4S28_23310 PF00990 Diguanylate cyclase, GGDEF domain M4S28_23310 PF00498 FHA domain M4S28_23310 PF00563 EAL domain M4S28_23320 PF03717 Penicillin-binding Protein dimerisation domain M4S28_23320 PF00905 Penicillin binding protein transpeptidase domain M4S28_23325 PF00226 DnaJ domain M4S28_23325 PF00684 DnaJ central domain M4S28_23325 PF01556 DnaJ C terminal domain M4S28_23345 PF00892 EamA-like transporter family M4S28_23350 PF12793 Sugar transport-related sRNA regulator N-term M4S28_23350 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M4S28_23360 PF03061 Thioesterase superfamily M4S28_23365 PF01435 Peptidase family M48 M4S28_23375 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) M4S28_23380 PF12262 Bacterial virulence factor lipase N-terminal M4S28_23390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_23390 PF03466 LysR substrate binding domain M4S28_23400 PF13533 Biotin-lipoyl like M4S28_23410 PF00271 Helicase conserved C-terminal domain M4S28_23410 PF00270 DEAD/DEAH box helicase M4S28_23425 PF03741 Integral membrane protein TerC family M4S28_23430 PF02872 5'-nucleotidase, C-terminal domain M4S28_23430 PF00149 Calcineurin-like phosphoesterase M4S28_23435 PF11398 Protein of unknown function (DUF2813) M4S28_23440 PF06496 Protein of unknown function (DUF1097) M4S28_23445 PF03466 LysR substrate binding domain M4S28_23445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_23450 PF01226 Formate/nitrite transporter M4S28_23455 PF04264 YceI-like domain M4S28_23460 PF01292 Prokaryotic cytochrome b561 M4S28_23475 PF12792 CSS motif domain associated with EAL M4S28_23475 PF00563 EAL domain M4S28_23480 PF00873 AcrB/AcrD/AcrF family M4S28_23485 PF00529 HlyD membrane-fusion protein of T1SS M4S28_23485 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M4S28_23490 PF00529 HlyD membrane-fusion protein of T1SS M4S28_23490 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M4S28_23500 PF00270 DEAD/DEAH box helicase M4S28_23500 PF00271 Helicase conserved C-terminal domain M4S28_23505 PF04336 Acyl carrier protein phosphodiesterase M4S28_23510 PF03222 Tryptophan/tyrosine permease family M4S28_23515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M4S28_23520 PF13419 Haloacid dehalogenase-like hydrolase M4S28_23525 PF11849 Domain of unknown function (DUF3369) M4S28_23570 PF00294 pfkB family carbohydrate kinase M4S28_23575 PF01268 Formate--tetrahydrofolate ligase M4S28_23580 PF17158 Membrane-associated sensor, integral membrane domain M4S28_23580 PF00990 Diguanylate cyclase, GGDEF domain M4S28_23585 PF13419 Haloacid dehalogenase-like hydrolase M4S28_23590 PF00472 RF-1 domain M4S28_23605 PF00089 Trypsin M4S28_23610 PF08669 Glycine cleavage T-protein C-terminal barrel domain M4S28_23610 PF01571 Aminomethyltransferase folate-binding domain M4S28_23620 PF00464 Serine hydroxymethyltransferase M4S28_23625 PF01597 Glycine cleavage H-protein M4S28_23630 PF02347 Glycine cleavage system P-protein M4S28_23650 PF01554 MatE M4S28_23660 PF02743 Cache domain M4S28_23660 PF00672 HAMP domain M4S28_23660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M4S28_23670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_23670 PF03466 LysR substrate binding domain M4S28_23675 PF01810 LysE type translocator M4S28_23690 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M4S28_23700 PF00579 tRNA synthetases class I (W and Y) M4S28_23710 PF00291 Pyridoxal-phosphate dependent enzyme M4S28_23715 PF07690 Major Facilitator Superfamily M4S28_23725 PF01161 Phosphatidylethanolamine-binding protein M4S28_23730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_23730 PF00512 His Kinase A (phospho-acceptor) domain M4S28_23730 PF00989 PAS fold M4S28_23730 PF00672 HAMP domain M4S28_23735 PF00072 Response regulator receiver domain M4S28_23735 PF00486 Transcriptional regulatory protein, C terminal M4S28_23750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_23750 PF03466 LysR substrate binding domain M4S28_23755 PF13533 Biotin-lipoyl like M4S28_23760 PF07690 Major Facilitator Superfamily M4S28_23775 PF04542 Sigma-70 region 2 M4S28_23775 PF04539 Sigma-70 region 3 M4S28_23775 PF04545 Sigma-70, region 4 M4S28_23775 PF00140 Sigma-70 factor, region 1.2 M4S28_23795 PF13533 Biotin-lipoyl like M4S28_23800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_23800 PF00072 Response regulator receiver domain M4S28_23805 PF02321 Outer membrane efflux protein M4S28_23810 PF00664 ABC transporter transmembrane region M4S28_23810 PF00005 ABC transporter M4S28_23815 PF00005 ABC transporter M4S28_23825 PF00672 HAMP domain M4S28_23825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_23825 PF00512 His Kinase A (phospho-acceptor) domain M4S28_23825 PF01627 Hpt domain M4S28_23825 PF00072 Response regulator receiver domain M4S28_23825 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M4S28_23850 PF04055 Radical SAM superfamily M4S28_23850 PF13186 Iron-sulfur cluster-binding domain M4S28_23855 PF03781 Sulfatase-modifying factor enzyme 1 M4S28_23865 PF13407 Periplasmic binding protein domain M4S28_23875 PF03707 Bacterial signalling protein N terminal repeat M4S28_23875 PF00563 EAL domain M4S28_23875 PF00990 Diguanylate cyclase, GGDEF domain M4S28_23880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_23880 PF03466 LysR substrate binding domain M4S28_23895 PF13519 von Willebrand factor type A domain M4S28_23910 PF07726 ATPase family associated with various cellular activities (AAA) M4S28_23910 PF17863 AAA lid domain M4S28_23920 PF00884 Sulfatase M4S28_23925 PF00884 Sulfatase M4S28_23930 PF00034 Cytochrome c M4S28_23930 PF03150 Di-haem cytochrome c peroxidase M4S28_23935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_23935 PF00512 His Kinase A (phospho-acceptor) domain M4S28_23935 PF09308 LuxQ, periplasmic M4S28_23935 PF00072 Response regulator receiver domain M4S28_23945 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) M4S28_23960 PF00962 Adenosine/AMP deaminase M4S28_23965 PF00072 Response regulator receiver domain M4S28_23965 PF00196 Bacterial regulatory proteins, luxR family M4S28_23980 PF02469 Fasciclin domain M4S28_24010 PF02567 Phenazine biosynthesis-like protein M4S28_24015 PF01810 LysE type translocator M4S28_24025 PF03707 Bacterial signalling protein N terminal repeat M4S28_24025 PF00990 Diguanylate cyclase, GGDEF domain M4S28_24025 PF00563 EAL domain M4S28_24045 PF00115 Cytochrome C and Quinol oxidase polypeptide I M4S28_24055 PF13442 Cytochrome C oxidase, cbb3-type, subunit III M4S28_24055 PF00034 Cytochrome c M4S28_24070 PF00561 alpha/beta hydrolase fold M4S28_24085 PF02028 BCCT, betaine/carnitine/choline family transporter M4S28_24095 PF00171 Aldehyde dehydrogenase family M4S28_24105 PF03466 LysR substrate binding domain M4S28_24105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_24115 PF00119 ATP synthase A chain M4S28_24120 PF00137 ATP synthase subunit C M4S28_24125 PF00430 ATP synthase B/B' CF(0) M4S28_24130 PF00213 ATP synthase delta (OSCP) subunit M4S28_24135 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M4S28_24135 PF00306 ATP synthase alpha/beta chain, C terminal domain M4S28_24135 PF02874 ATP synthase alpha/beta family, beta-barrel domain M4S28_24140 PF00231 ATP synthase M4S28_24145 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M4S28_24145 PF02874 ATP synthase alpha/beta family, beta-barrel domain M4S28_24150 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain M4S28_24150 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain M4S28_24160 PF03466 LysR substrate binding domain M4S28_24160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_24170 PF00005 ABC transporter M4S28_24170 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M4S28_24175 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_24175 PF12911 N-terminal TM domain of oligopeptide transport permease C M4S28_24180 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_24185 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M4S28_24205 PF05025 RbsD / FucU transport protein family M4S28_24210 PF00005 ABC transporter M4S28_24215 PF02653 Branched-chain amino acid transport system / permease component M4S28_24220 PF13407 Periplasmic binding protein domain M4S28_24225 PF00294 pfkB family carbohydrate kinase M4S28_24230 PF00356 Bacterial regulatory proteins, lacI family M4S28_24235 PF00072 Response regulator receiver domain M4S28_24235 PF00512 His Kinase A (phospho-acceptor) domain M4S28_24235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_24235 PF09308 LuxQ, periplasmic M4S28_24240 PF00795 Carbon-nitrogen hydrolase M4S28_24305 PF00005 ABC transporter M4S28_24345 PF03466 LysR substrate binding domain M4S28_24345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_24380 PF05016 ParE toxin of type II toxin-antitoxin system, parDE M4S28_24415 PF04986 Putative transposase M4S28_24415 PF14319 Transposase zinc-binding domain M4S28_24420 PF13495 Phage integrase, N-terminal SAM-like domain M4S28_24420 PF00589 Phage integrase family M4S28_24425 PF04986 Putative transposase M4S28_24425 PF14319 Transposase zinc-binding domain M4S28_24430 PF00589 Phage integrase family M4S28_24430 PF13495 Phage integrase, N-terminal SAM-like domain M4S28_24440 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M4S28_24440 PF00384 Molybdopterin oxidoreductase M4S28_24440 PF01568 Molydopterin dinucleotide binding domain M4S28_24445 PF07992 Pyridine nucleotide-disulphide oxidoreductase M4S28_24445 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M4S28_24445 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M4S28_24445 PF04324 BFD-like [2Fe-2S] binding domain M4S28_24445 PF18267 Rubredoxin NAD+ reductase C-terminal domain M4S28_24455 PF07690 Major Facilitator Superfamily M4S28_24460 PF03793 PASTA domain M4S28_24460 PF00069 Protein kinase domain M4S28_24465 PF00356 Bacterial regulatory proteins, lacI family M4S28_24465 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M4S28_24470 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M4S28_24470 PF00381 PTS HPr component phosphorylation site M4S28_24475 PF00294 pfkB family carbohydrate kinase M4S28_24480 PF02378 Phosphotransferase system, EIIC M4S28_24480 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M4S28_24490 PF00873 AcrB/AcrD/AcrF family M4S28_24510 PF04116 Fatty acid hydroxylase superfamily M4S28_24515 PF00486 Transcriptional regulatory protein, C terminal M4S28_24515 PF00072 Response regulator receiver domain M4S28_24535 PF02798 Glutathione S-transferase, N-terminal domain M4S28_24540 PF01844 HNH endonuclease M4S28_24550 PF07690 Major Facilitator Superfamily M4S28_24555 PF08774 VRR-NUC domain M4S28_24555 PF18081 Fanconi anemia-associated nuclease SAP domain M4S28_24565 PF00072 Response regulator receiver domain M4S28_24565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_24565 PF00672 HAMP domain M4S28_24565 PF17149 Periplasmic sensor domain found in signal transduction proteins M4S28_24565 PF00512 His Kinase A (phospho-acceptor) domain M4S28_24565 PF01627 Hpt domain M4S28_24575 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M4S28_24580 PF02142 MGS-like domain M4S28_24590 PF12462 DNA helicase IV / RNA helicase N terminal M4S28_24590 PF00580 UvrD/REP helicase N-terminal domain M4S28_24590 PF13361 UvrD-like helicase C-terminal domain M4S28_24595 PF12805 FUSC-like inner membrane protein yccS M4S28_24615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_24615 PF03466 LysR substrate binding domain M4S28_24620 PF04055 Radical SAM superfamily M4S28_24625 PF11230 Protein of unknown function (DUF3029) M4S28_24635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_24635 PF03466 LysR substrate binding domain M4S28_24650 PF00892 EamA-like transporter family M4S28_24655 PF13419 Haloacid dehalogenase-like hydrolase M4S28_24665 PF00465 Iron-containing alcohol dehydrogenase M4S28_24685 PF02525 Flavodoxin-like fold M4S28_24690 PF00999 Sodium/hydrogen exchanger family M4S28_24690 PF02254 TrkA-N domain M4S28_24720 PF08240 Alcohol dehydrogenase GroES-like domain M4S28_24720 PF00107 Zinc-binding dehydrogenase M4S28_24725 PF00155 Aminotransferase class I and II M4S28_24730 PF17153 Periplasmic sensor domain, extracellular M4S28_24730 PF00563 EAL domain M4S28_24740 PF02687 FtsX-like permease family M4S28_24740 PF12704 MacB-like periplasmic core domain M4S28_24740 PF00005 ABC transporter M4S28_24745 PF02687 FtsX-like permease family M4S28_24745 PF00005 ABC transporter M4S28_24745 PF12704 MacB-like periplasmic core domain M4S28_24750 PF00005 ABC transporter M4S28_24750 PF02687 FtsX-like permease family M4S28_24750 PF12704 MacB-like periplasmic core domain M4S28_24760 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M4S28_24770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_24770 PF03466 LysR substrate binding domain M4S28_24775 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M4S28_24800 PF00990 Diguanylate cyclase, GGDEF domain M4S28_24800 PF01590 GAF domain M4S28_24800 PF00563 EAL domain M4S28_24800 PF00360 Phytochrome region M4S28_24805 PF01966 HD domain M4S28_24815 PF03466 LysR substrate binding domain M4S28_24815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_24820 PF01906 Putative heavy-metal-binding M4S28_24825 PF01476 LysM domain M4S28_24825 PF08525 Opacity-associated protein A N-terminal motif M4S28_24825 PF01551 Peptidase family M23 M4S28_24850 PF00005 ABC transporter M4S28_24850 PF00664 ABC transporter transmembrane region M4S28_24855 PF00005 ABC transporter M4S28_24855 PF00664 ABC transporter transmembrane region M4S28_24870 PF08264 Anticodon-binding domain of tRNA M4S28_24870 PF00133 tRNA synthetases class I (I, L, M and V) M4S28_24890 PF03313 Serine dehydratase alpha chain M4S28_24890 PF03315 Serine dehydratase beta chain M4S28_24895 PF00854 POT family M4S28_24900 PF08021 Siderophore-interacting FAD-binding domain M4S28_24900 PF04954 Siderophore-interacting protein M4S28_24905 PF00356 Bacterial regulatory proteins, lacI family M4S28_24905 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M4S28_24910 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain M4S28_24910 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M4S28_24915 PF01202 Shikimate kinase M4S28_24920 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component M4S28_24930 PF03480 Bacterial extracellular solute-binding protein, family 7 M4S28_24940 PF00392 Bacterial regulatory proteins, gntR family M4S28_24940 PF07702 UTRA domain M4S28_24945 PF00528 Binding-protein-dependent transport system inner membrane component M4S28_24950 PF00005 ABC transporter M4S28_24955 PF01266 FAD dependent oxidoreductase M4S28_24965 PF00266 Aminotransferase class-V M4S28_24970 PF00202 Aminotransferase class-III M4S28_24975 PF13419 Haloacid dehalogenase-like hydrolase M4S28_24980 PF00691 OmpA family M4S28_24980 PF01389 OmpA-like transmembrane domain M4S28_24985 PF02566 OsmC-like protein M4S28_24990 PF01641 SelR domain M4S28_24990 PF01625 Peptide methionine sulfoxide reductase M4S28_24995 PF02386 Cation transport protein M4S28_25000 PF02254 TrkA-N domain M4S28_25000 PF02080 TrkA-C domain M4S28_25005 PF00924 Mechanosensitive ion channel M4S28_25010 PF00483 Nucleotidyl transferase M4S28_25010 PF01050 Mannose-6-phosphate isomerase M4S28_25015 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M4S28_25015 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M4S28_25015 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M4S28_25015 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M4S28_25020 PF00793 DAHP synthetase I family M4S28_25025 PF12843 Putative quorum-sensing-regulated virulence factor M4S28_25040 PF18416 N-acetylglucosamine binding protein domain 2 M4S28_25040 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading M4S28_25045 PF01040 UbiA prenyltransferase family M4S28_25050 PF02628 Cytochrome oxidase assembly protein M4S28_25070 PF00510 Cytochrome c oxidase subunit III M4S28_25075 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 M4S28_25080 PF00115 Cytochrome C and Quinol oxidase polypeptide I M4S28_25085 PF00116 Cytochrome C oxidase subunit II, periplasmic domain M4S28_25085 PF02790 Cytochrome C oxidase subunit II, transmembrane domain M4S28_25090 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M4S28_25090 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M4S28_25090 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M4S28_25090 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M4S28_25095 PF01810 LysE type translocator M4S28_25100 PF01557 Fumarylacetoacetate (FAA) hydrolase family M4S28_25110 PF00012 Hsp70 protein M4S28_25130 PF00072 Response regulator receiver domain M4S28_25130 PF09308 LuxQ, periplasmic M4S28_25130 PF00512 His Kinase A (phospho-acceptor) domain M4S28_25130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_25135 PF13407 Periplasmic binding protein domain M4S28_25140 PF01541 GIY-YIG catalytic domain M4S28_25145 PF04337 Protein of unknown function, DUF480 M4S28_25155 PF04363 Protein of unknown function (DUF496) M4S28_25170 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M4S28_25170 PF00072 Response regulator receiver domain M4S28_25170 PF01627 Hpt domain M4S28_25170 PF00512 His Kinase A (phospho-acceptor) domain M4S28_25170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_25170 PF00672 HAMP domain M4S28_25175 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M4S28_25175 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M4S28_25180 PF00111 2Fe-2S iron-sulfur cluster binding domain M4S28_25180 PF00175 Oxidoreductase NAD-binding domain M4S28_25180 PF00970 Oxidoreductase FAD-binding domain M4S28_25185 PF03063 Prismane/CO dehydrogenase family M4S28_25200 PF01810 LysE type translocator M4S28_25205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_25205 PF03466 LysR substrate binding domain M4S28_25215 PF13520 Amino acid permease M4S28_25220 PF00392 Bacterial regulatory proteins, gntR family M4S28_25220 PF00155 Aminotransferase class I and II M4S28_25230 PF03253 Urea transporter M4S28_25260 PF17863 AAA lid domain M4S28_25260 PF07726 ATPase family associated with various cellular activities (AAA) M4S28_25275 PF04055 Radical SAM superfamily M4S28_25275 PF13186 Iron-sulfur cluster-binding domain M4S28_25280 PF16385 Domain of unknown function M4S28_25280 PF00884 Sulfatase M4S28_25285 PF00106 short chain dehydrogenase M4S28_25290 PF00196 Bacterial regulatory proteins, luxR family M4S28_25290 PF00072 Response regulator receiver domain M4S28_25325 PF12833 Helix-turn-helix domain M4S28_25340 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin M4S28_25345 PF07969 Amidohydrolase family M4S28_25350 PF00313 'Cold-shock' DNA-binding domain M4S28_25355 PF00990 Diguanylate cyclase, GGDEF domain M4S28_25370 PF00270 DEAD/DEAH box helicase M4S28_25370 PF00271 Helicase conserved C-terminal domain M4S28_25375 PF00990 Diguanylate cyclase, GGDEF domain M4S28_25375 PF03707 Bacterial signalling protein N terminal repeat M4S28_25375 PF00563 EAL domain M4S28_25390 PF08521 Two-component sensor kinase N-terminal M4S28_25390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_25390 PF00512 His Kinase A (phospho-acceptor) domain M4S28_25395 PF00072 Response regulator receiver domain M4S28_25395 PF00486 Transcriptional regulatory protein, C terminal M4S28_25400 PF00873 AcrB/AcrD/AcrF family M4S28_25410 PF02321 Outer membrane efflux protein M4S28_25420 PF01773 Na+ dependent nucleoside transporter N-terminus M4S28_25420 PF07662 Na+ dependent nucleoside transporter C-terminus M4S28_25420 PF07670 Nucleoside recognition M4S28_25430 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M4S28_25435 PF03611 PTS system sugar-specific permease component M4S28_25440 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M4S28_25445 PF01966 HD domain M4S28_25450 PF13302 Acetyltransferase (GNAT) domain M4S28_25455 PF00512 His Kinase A (phospho-acceptor) domain M4S28_25455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M4S28_25455 PF00672 HAMP domain M4S28_25455 PF16527 Two-component sensor protein CpxA, periplasmic domain M4S28_25460 PF00486 Transcriptional regulatory protein, C terminal M4S28_25460 PF00072 Response regulator receiver domain M4S28_25465 PF13426 PAS domain M4S28_25465 PF00990 Diguanylate cyclase, GGDEF domain M4S28_25465 PF00563 EAL domain M4S28_25475 PF08447 PAS fold M4S28_25475 PF00990 Diguanylate cyclase, GGDEF domain M4S28_25475 PF00563 EAL domain M4S28_25475 PF08448 PAS fold M4S28_25485 PF00005 ABC transporter M4S28_25505 PF01872 RibD C-terminal domain M4S28_25505 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M4S28_25515 PF00849 RNA pseudouridylate synthase M4S28_25530 PF04754 Putative transposase, YhgA-like M4S28_25535 PF13614 AAA domain M4S28_25560 PF02954 Bacterial regulatory protein, Fis family M4S28_25585 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system M4S28_25600 PF02195 ParB-like nuclease domain M4S28_25600 PF17762 HTH domain found in ParB protein M4S28_25635 PF01464 Transglycosylase SLT domain M4S28_25645 PF18340 DNA relaxase TraI 2B/2B-like domain M4S28_25645 PF18272 single-stranded DNA binding TraI N-terminal subdomain M4S28_25645 PF07057 DNA helicase TraI M4S28_25645 PF08751 TrwC relaxase M4S28_25670 PF10412 Type IV secretion-system coupling protein DNA-binding domain M4S28_25670 PF12615 F sex factor protein N terminal M4S28_25685 PF06122 Conjugative relaxosome accessory transposon protein M4S28_25695 PF13728 F plasmid transfer operon protein M4S28_25720 PF06986 Type-1V conjugative transfer system mating pair stabilisation M4S28_25730 PF06834 TraU protein M4S28_25745 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer M4S28_25800 PF13610 DDE domain M4S28_25825 PF00239 Resolvase, N terminal domain M4S28_25825 PF02796 Helix-turn-helix domain of resolvase M4S28_25860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M4S28_25860 PF03466 LysR substrate binding domain M4S28_25870 PF00293 NUDIX domain M4S28_25880 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M4S28_25895 PF02371 Transposase IS116/IS110/IS902 family M4S28_25895 PF01548 Transposase M4S28_25925 PF13610 DDE domain M4S28_25935 PF00668 Condensation domain M4S28_25935 PF13193 AMP-binding enzyme C-terminal domain M4S28_25935 PF00550 Phosphopantetheine attachment site M4S28_25935 PF00501 AMP-binding enzyme M4S28_25940 PF01032 FecCD transport family M4S28_25945 PF01032 FecCD transport family M4S28_25950 PF01497 Periplasmic binding protein M4S28_25955 PF07715 TonB-dependent Receptor Plug Domain M4S28_25955 PF00593 TonB dependent receptor M4S28_25960 PF00668 Condensation domain M4S28_25960 PF13193 AMP-binding enzyme C-terminal domain M4S28_25960 PF00501 AMP-binding enzyme M4S28_25965 PF00975 Thioesterase domain M4S28_25970 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) M4S28_25975 PF00501 AMP-binding enzyme M4S28_25975 PF13193 AMP-binding enzyme C-terminal domain M4S28_25975 PF00668 Condensation domain M4S28_25975 PF00550 Phosphopantetheine attachment site M4S28_25980 PF00282 Pyridoxal-dependent decarboxylase conserved domain M4S28_25985 PF00005 ABC transporter M4S28_25990 PF00664 ABC transporter transmembrane region M4S28_25990 PF00005 ABC transporter M4S28_25995 PF00793 DAHP synthetase I family M4S28_26000 PF00425 chorismate binding enzyme M4S28_26005 PF13193 AMP-binding enzyme C-terminal domain M4S28_26005 PF00501 AMP-binding enzyme M4S28_26010 PF00550 Phosphopantetheine attachment site M4S28_26010 PF00857 Isochorismatase family M4S28_26015 PF00005 ABC transporter M4S28_26030 PF13610 DDE domain M4S28_26065 PF00005 ABC transporter M4S28_26150 PF04002 RadC-like JAB domain M4S28_26185 PF08751 TrwC relaxase M4S28_26185 PF18340 DNA relaxase TraI 2B/2B-like domain M4S28_26185 PF07057 DNA helicase TraI M4S28_26185 PF18272 single-stranded DNA binding TraI N-terminal subdomain M4S28_26190 PF10412 Type IV secretion-system coupling protein DNA-binding domain M4S28_26190 PF12615 F sex factor protein N terminal M4S28_26200 PF13361 UvrD-like helicase C-terminal domain M4S28_26200 PF00580 UvrD/REP helicase N-terminal domain M4S28_26215 PF00114 Pilin (bacterial filament) M4S28_26215 PF07963 Prokaryotic N-terminal methylation motif M4S28_26225 PF00872 Transposase, Mutator family M4S28_26245 PF02954 Bacterial regulatory protein, Fis family M4S28_26300 PF02743 Cache domain M4S28_26300 PF00672 HAMP domain M4S28_26300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M4S28_26310 PF00216 Bacterial DNA-binding protein M4S28_26315 PF13610 DDE domain M4S28_26330 PF02472 Biopolymer transport protein ExbD/TolR M4S28_26335 PF01618 MotA/TolQ/ExbB proton channel family M4S28_26340 PF01618 MotA/TolQ/ExbB proton channel family M4S28_26355 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M4S28_26420 PF00691 OmpA family M4S28_26420 PF05736 OprF membrane domain