locus-tag class description J4N43_00005 PF00308 Bacterial dnaA protein J4N43_00005 PF08299 Bacterial dnaA protein helix-turn-helix J4N43_00005 PF11638 DnaA N-terminal domain J4N43_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain J4N43_00010 PF02767 DNA polymerase III beta subunit, central domain J4N43_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain J4N43_00015 PF02463 RecF/RecN/SMC N terminal domain J4N43_00020 PF00204 DNA gyrase B J4N43_00020 PF00986 DNA gyrase B subunit, carboxyl terminus J4N43_00020 PF18053 DNA gyrase B subunit insert domain J4N43_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_00020 PF01751 Toprim domain J4N43_00030 PF00011 Hsp20/alpha crystallin family J4N43_00035 PF00155 Aminotransferase class I and II J4N43_00040 PF00128 Alpha amylase, catalytic domain J4N43_00045 PF05746 DALR anticodon binding domain J4N43_00045 PF02092 Glycyl-tRNA synthetase beta subunit J4N43_00050 PF02091 Glycyl-tRNA synthetase alpha subunit J4N43_00055 PF01169 Uncharacterized protein family UPF0016 J4N43_00065 PF01206 Sulfurtransferase TusA J4N43_00075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_00075 PF03466 LysR substrate binding domain J4N43_00080 PF08240 Alcohol dehydrogenase GroES-like domain J4N43_00080 PF00107 Zinc-binding dehydrogenase J4N43_00085 PF02803 Thiolase, C-terminal domain J4N43_00085 PF00108 Thiolase, N-terminal domain J4N43_00090 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J4N43_00090 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J4N43_00090 PF00378 Enoyl-CoA hydratase/isomerase J4N43_00100 PF02386 Cation transport protein J4N43_00105 PF12724 Flavodoxin domain J4N43_00150 PF07731 Multicopper oxidase J4N43_00150 PF07732 Multicopper oxidase J4N43_00150 PF00394 Multicopper oxidase J4N43_00155 PF02537 CrcB-like protein, Camphor Resistance (CrcB) J4N43_00160 PF13667 ThiC-associated domain J4N43_00160 PF01964 Radical SAM ThiC family J4N43_00165 PF02581 Thiamine monophosphate synthase J4N43_00170 PF00899 ThiF family J4N43_00175 PF02597 ThiS family J4N43_00180 PF05690 Thiazole biosynthesis protein ThiG J4N43_00185 PF06968 Biotin and Thiamin Synthesis associated domain J4N43_00185 PF04055 Radical SAM superfamily J4N43_00190 PF00557 Metallopeptidase family M24 J4N43_00190 PF00557 Metallopeptidase family M24 J4N43_00190 PF01321 Creatinase/Prolidase N-terminal domain J4N43_00190 PF01321 Creatinase/Prolidase N-terminal domain J4N43_00195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_00195 PF03466 LysR substrate binding domain J4N43_00200 PF07690 Major Facilitator Superfamily J4N43_00220 PF05114 Protein of unknown function (DUF692) J4N43_00230 PF00580 UvrD/REP helicase N-terminal domain J4N43_00230 PF13361 UvrD-like helicase C-terminal domain J4N43_00235 PF01797 Transposase IS200 like J4N43_00245 PF01810 LysE type translocator J4N43_00255 PF00892 EamA-like transporter family J4N43_00260 PF00271 Helicase conserved C-terminal domain J4N43_00260 PF00570 HRDC domain J4N43_00260 PF16124 RecQ zinc-binding J4N43_00260 PF09382 RQC domain J4N43_00260 PF00270 DEAD/DEAH box helicase J4N43_00270 PF02592 Putative vitamin uptake transporter J4N43_00280 PF02541 Ppx/GppA phosphatase family J4N43_00285 PF00271 Helicase conserved C-terminal domain J4N43_00285 PF00270 DEAD/DEAH box helicase J4N43_00290 PF00085 Thioredoxin J4N43_00295 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N43_00295 PF07498 Rho termination factor, N-terminal domain J4N43_00295 PF07497 Rho termination factor, RNA-binding domain J4N43_00305 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase J4N43_00310 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N43_00315 PF00175 Oxidoreductase NAD-binding domain J4N43_00350 PF01797 Transposase IS200 like J4N43_00355 PF07219 HemY protein N-terminus J4N43_00360 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase J4N43_00365 PF02602 Uroporphyrinogen-III synthase HemD J4N43_00370 PF03900 Porphobilinogen deaminase, C-terminal domain J4N43_00370 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain J4N43_00375 PF01295 Adenylate cyclase, class-I J4N43_00375 PF12633 Adenylate cyclase NT domain J4N43_00380 PF01491 Frataxin-like domain J4N43_00390 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain J4N43_00390 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J4N43_00395 PF01678 Diaminopimelate epimerase J4N43_00405 PF00589 Phage integrase family J4N43_00405 PF02899 Phage integrase, N-terminal SAM-like domain J4N43_00410 PF13419 Haloacid dehalogenase-like hydrolase J4N43_00415 PF08495 FIST N domain J4N43_00415 PF10442 FIST C domain J4N43_00415 PF00990 Diguanylate cyclase, GGDEF domain J4N43_00415 PF00563 EAL domain J4N43_00420 PF03942 DTW domain J4N43_00440 PF12146 Serine aminopeptidase, S33 J4N43_00445 PF01810 LysE type translocator J4N43_00450 PF00563 EAL domain J4N43_00450 PF08668 HDOD domain J4N43_00455 PF01022 Bacterial regulatory protein, arsR family J4N43_00460 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J4N43_00460 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J4N43_00480 PF10694 Protein of unknown function (DUF2500) J4N43_00500 PF01914 MarC family integral membrane protein J4N43_00515 PF00448 SRP54-type protein, GTPase domain J4N43_00515 PF02881 SRP54-type protein, helical bundle domain J4N43_00520 PF00005 ABC transporter J4N43_00525 PF18075 FtsX extracellular domain J4N43_00530 PF04545 Sigma-70, region 4 J4N43_00530 PF04542 Sigma-70 region 2 J4N43_00530 PF00140 Sigma-70 factor, region 1.2 J4N43_00535 PF00581 Rhodanese-like domain J4N43_00540 PF01694 Rhomboid family J4N43_00540 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease J4N43_00545 PF03748 Flagellar basal body-associated protein FliL J4N43_00550 PF04345 Chorismate lyase J4N43_00555 PF01040 UbiA prenyltransferase family J4N43_00560 PF01553 Acyltransferase J4N43_00565 PF01726 LexA DNA binding domain J4N43_00565 PF00717 Peptidase S24-like J4N43_00570 PF04072 Leucine carboxyl methyltransferase J4N43_00575 PF01554 MatE J4N43_00580 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4N43_00580 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N43_00585 PF00440 Bacterial regulatory proteins, tetR family J4N43_00595 PF05958 tRNA (Uracil-5-)-methyltransferase J4N43_00600 PF07715 TonB-dependent Receptor Plug Domain J4N43_00600 PF00593 TonB dependent receptor J4N43_00605 PF01797 Transposase IS200 like J4N43_00615 PF01177 Asp/Glu/Hydantoin racemase J4N43_00680 PF13091 PLD-like domain J4N43_00690 PF01565 FAD binding domain J4N43_00690 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain J4N43_00695 PF02237 Biotin protein ligase C terminal domain J4N43_00695 PF08279 HTH domain J4N43_00695 PF03099 Biotin/lipoate A/B protein ligase family J4N43_00700 PF00485 Phosphoribulokinase / Uridine kinase family J4N43_00725 PF00009 Elongation factor Tu GTP binding domain J4N43_00725 PF03143 Elongation factor Tu C-terminal domain J4N43_00725 PF03144 Elongation factor Tu domain 2 J4N43_00730 PF00584 SecE/Sec61-gamma subunits of protein translocation complex J4N43_00735 PF02357 Transcription termination factor nusG J4N43_00735 PF00467 KOW motif J4N43_00740 PF03946 Ribosomal protein L11, N-terminal domain J4N43_00740 PF00298 Ribosomal protein L11, RNA binding domain J4N43_00745 PF00687 Ribosomal protein L1p/L10e family J4N43_00750 PF00466 Ribosomal protein L10 J4N43_00755 PF16320 Ribosomal protein L7/L12 dimerisation domain J4N43_00755 PF00542 Ribosomal protein L7/L12 C-terminal domain J4N43_00760 PF10385 RNA polymerase beta subunit external 1 domain J4N43_00760 PF04563 RNA polymerase beta subunit J4N43_00760 PF04560 RNA polymerase Rpb2, domain 7 J4N43_00760 PF00562 RNA polymerase Rpb2, domain 6 J4N43_00760 PF04565 RNA polymerase Rpb2, domain 3 J4N43_00760 PF04561 RNA polymerase Rpb2, domain 2 J4N43_00765 PF00623 RNA polymerase Rpb1, domain 2 J4N43_00765 PF04983 RNA polymerase Rpb1, domain 3 J4N43_00765 PF05000 RNA polymerase Rpb1, domain 4 J4N43_00765 PF04998 RNA polymerase Rpb1, domain 5 J4N43_00765 PF04997 RNA polymerase Rpb1, domain 1 J4N43_00770 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ J4N43_00775 PF09297 NADH pyrophosphatase zinc ribbon domain J4N43_00775 PF00293 NUDIX domain J4N43_00780 PF01208 Uroporphyrinogen decarboxylase (URO-D) J4N43_00785 PF03167 Uracil DNA glycosylase superfamily J4N43_00790 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N43_00795 PF04222 Protein of unknown function (DUF416) J4N43_00800 PF01595 Cyclin M transmembrane N-terminal domain J4N43_00800 PF00571 CBS domain J4N43_00805 PF00216 Bacterial DNA-binding protein J4N43_00815 PF02844 Phosphoribosylglycinamide synthetase, N domain J4N43_00815 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain J4N43_00815 PF02843 Phosphoribosylglycinamide synthetase, C domain J4N43_00820 PF01808 AICARFT/IMPCHase bienzyme J4N43_00820 PF02142 MGS-like domain J4N43_00825 PF13411 MerR HTH family regulatory protein J4N43_00830 PF18500 CadC C-terminal domain 1 J4N43_00830 PF00486 Transcriptional regulatory protein, C terminal J4N43_00835 PF13520 Amino acid permease J4N43_00840 PF01276 Orn/Lys/Arg decarboxylase, major domain J4N43_00840 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain J4N43_00840 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain J4N43_00890 PF12848 ABC transporter J4N43_00890 PF00005 ABC transporter J4N43_00900 PF02954 Bacterial regulatory protein, Fis family J4N43_00905 PF01207 Dihydrouridine synthase (Dus) J4N43_00915 PF02785 Biotin carboxylase C-terminal domain J4N43_00915 PF00289 Biotin carboxylase, N-terminal domain J4N43_00915 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J4N43_00920 PF00364 Biotin-requiring enzyme J4N43_00925 PF01220 Dehydroquinase class II J4N43_00930 PF16177 Acetyl-coenzyme A synthetase N-terminus J4N43_00930 PF13193 AMP-binding enzyme C-terminal domain J4N43_00930 PF00501 AMP-binding enzyme J4N43_00945 PF12832 MFS_1 like family J4N43_00950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_00950 PF00512 His Kinase A (phospho-acceptor) domain J4N43_00950 PF09308 LuxQ, periplasmic J4N43_00950 PF00072 Response regulator receiver domain J4N43_00955 PF10415 Fumarase C C-terminus J4N43_00955 PF00206 Lyase J4N43_00970 PF00474 Sodium:solute symporter family J4N43_00980 PF00999 Sodium/hydrogen exchanger family J4N43_00980 PF02080 TrkA-C domain J4N43_00980 PF03471 Transporter associated domain J4N43_00985 PF00196 Bacterial regulatory proteins, luxR family J4N43_00985 PF00072 Response regulator receiver domain J4N43_00990 PF11412 Disulphide bond corrector protein DsbC J4N43_00990 PF02683 Cytochrome C biogenesis protein transmembrane region J4N43_00995 PF03605 Anaerobic c4-dicarboxylate membrane transporter J4N43_01000 PF00206 Lyase J4N43_01000 PF10415 Fumarase C C-terminus J4N43_01005 PF04186 FxsA cytoplasmic membrane protein J4N43_01010 PF00588 SpoU rRNA Methylase family J4N43_01015 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain J4N43_01015 PF02777 Iron/manganese superoxide dismutases, C-terminal domain J4N43_01020 PF00512 His Kinase A (phospho-acceptor) domain J4N43_01020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_01020 PF00672 HAMP domain J4N43_01020 PF16527 Two-component sensor protein CpxA, periplasmic domain J4N43_01025 PF00072 Response regulator receiver domain J4N43_01025 PF00486 Transcriptional regulatory protein, C terminal J4N43_01030 PF07813 LTXXQ motif family protein J4N43_01035 PF01545 Cation efflux family J4N43_01035 PF16916 Dimerisation domain of Zinc Transporter J4N43_01040 PF00365 Phosphofructokinase J4N43_01045 PF01554 MatE J4N43_01050 PF00166 Chaperonin 10 Kd subunit J4N43_01055 PF00118 TCP-1/cpn60 chaperonin family J4N43_01065 PF02308 MgtC family J4N43_01070 PF04055 Radical SAM superfamily J4N43_01075 PF09285 Elongation factor P, C-terminal J4N43_01075 PF08207 Elongation factor P (EF-P) KOW-like domain J4N43_01075 PF01132 Elongation factor P (EF-P) OB domain J4N43_01085 PF02313 Fumarate reductase subunit D J4N43_01090 PF02300 Fumarate reductase subunit C J4N43_01095 PF13085 2Fe-2S iron-sulfur cluster binding domain J4N43_01095 PF13183 4Fe-4S dicluster domain J4N43_01100 PF02910 Fumarate reductase flavoprotein C-term J4N43_01100 PF00890 FAD binding domain J4N43_01105 PF00152 tRNA synthetases class II (D, K and N) J4N43_01115 PF00440 Bacterial regulatory proteins, tetR family J4N43_01115 PF08360 QacR-like protein, C-terminal region J4N43_01125 PF01551 Peptidase family M23 J4N43_01130 PF00132 Bacterial transferase hexapeptide (six repeats) J4N43_01130 PF06426 Serine acetyltransferase, N-terminal J4N43_01135 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus J4N43_01135 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus J4N43_01140 PF02556 Preprotein translocase subunit SecB J4N43_01145 PF00581 Rhodanese-like domain J4N43_01150 PF01676 Metalloenzyme superfamily J4N43_01150 PF06415 BPG-independent PGAM N-terminus (iPGM_N) J4N43_01160 PF02080 TrkA-C domain J4N43_01160 PF03600 Citrate transporter J4N43_01165 PF02666 Phosphatidylserine decarboxylase J4N43_01170 PF03193 RsgA GTPase J4N43_01175 PF00929 Exonuclease J4N43_01240 PF08331 Domain of unknown function (DUF1730) J4N43_01245 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE J4N43_01250 PF01520 N-acetylmuramoyl-L-alanine amidase J4N43_01255 PF01119 DNA mismatch repair protein, C-terminal domain J4N43_01255 PF08676 MutL C terminal dimerisation domain J4N43_01265 PF17209 Hfq protein J4N43_01270 PF16360 GTP-binding GTPase Middle Region J4N43_01270 PF13167 GTP-binding GTPase N-terminal J4N43_01270 PF01926 50S ribosome-binding GTPase J4N43_01275 PF01145 SPFH domain / Band 7 family J4N43_01275 PF12221 Bacterial membrane protein N terminal J4N43_01280 PF01145 SPFH domain / Band 7 family J4N43_01285 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) J4N43_01290 PF00709 Adenylosuccinate synthetase J4N43_01295 PF08238 Sel1 repeat J4N43_01300 PF00175 Oxidoreductase NAD-binding domain J4N43_01300 PF00970 Oxidoreductase FAD-binding domain J4N43_01300 PF00042 Globin J4N43_01305 PF02082 Transcriptional regulator J4N43_01310 PF08206 Ribonuclease B OB domain J4N43_01310 PF00575 S1 RNA binding domain J4N43_01310 PF00773 RNB domain J4N43_01310 PF08461 Ribonuclease R winged-helix domain J4N43_01310 PF17876 Cold shock domain J4N43_01315 PF08032 RNA 2'-O ribose methyltransferase substrate binding J4N43_01315 PF00588 SpoU rRNA Methylase family J4N43_01320 PF13419 Haloacid dehalogenase-like hydrolase J4N43_01325 PF00579 tRNA synthetases class I (W and Y) J4N43_01340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_01340 PF03466 LysR substrate binding domain J4N43_01345 PF03806 AbgT putative transporter family J4N43_01350 PF07687 Peptidase dimerisation domain J4N43_01350 PF01546 Peptidase family M20/M25/M40 J4N43_01360 PF00892 EamA-like transporter family J4N43_01365 PF01047 MarR family J4N43_01370 PF00117 Glutamine amidotransferase class-I J4N43_01375 PF00202 Aminotransferase class-III J4N43_01380 PF04958 Arginine N-succinyltransferase beta subunit J4N43_01385 PF00171 Aldehyde dehydrogenase family J4N43_01395 PF00027 Cyclic nucleotide-binding domain J4N43_01395 PF13545 Crp-like helix-turn-helix domain J4N43_01400 PF00485 Phosphoribulokinase / Uridine kinase family J4N43_01405 PF06794 Uncharacterised protein family (UPF0270) J4N43_01410 PF00561 alpha/beta hydrolase fold J4N43_01420 PF00005 ABC transporter J4N43_01420 PF12848 ABC transporter J4N43_01425 PF02525 Flavodoxin-like fold J4N43_01430 PF00999 Sodium/hydrogen exchanger family J4N43_01430 PF02254 TrkA-N domain J4N43_01440 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N43_01445 PF01112 Asparaginase J4N43_01450 PF04102 SlyX J4N43_01460 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J4N43_01460 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N43_01465 PF13309 HTH domain J4N43_01465 PF08348 YheO-like PAS domain J4N43_01470 PF02635 DsrE/DsrF-like family J4N43_01475 PF02635 DsrE/DsrF-like family J4N43_01480 PF04077 DsrH like protein J4N43_01485 PF00164 Ribosomal protein S12/S23 J4N43_01490 PF00177 Ribosomal protein S7p/S5e J4N43_01495 PF00679 Elongation factor G C-terminus J4N43_01495 PF14492 Elongation Factor G, domain II J4N43_01495 PF03764 Elongation factor G, domain IV J4N43_01495 PF00009 Elongation factor Tu GTP binding domain J4N43_01495 PF03144 Elongation factor Tu domain 2 J4N43_01500 PF03144 Elongation factor Tu domain 2 J4N43_01500 PF03143 Elongation factor Tu C-terminal domain J4N43_01500 PF00009 Elongation factor Tu GTP binding domain J4N43_01505 PF04324 BFD-like [2Fe-2S] binding domain J4N43_01510 PF00210 Ferritin-like domain J4N43_01515 PF00390 Malic enzyme, N-terminal domain J4N43_01515 PF03949 Malic enzyme, NAD binding domain J4N43_01520 PF01340 Met Apo-repressor, MetJ J4N43_01525 PF01053 Cys/Met metabolism PLP-dependent enzyme J4N43_01530 PF00696 Amino acid kinase family J4N43_01530 PF00742 Homoserine dehydrogenase J4N43_01530 PF03447 Homoserine dehydrogenase, NAD binding domain J4N43_01535 PF02219 Methylenetetrahydrofolate reductase J4N43_01545 PF00311 Phosphoenolpyruvate carboxylase J4N43_01550 PF07687 Peptidase dimerisation domain J4N43_01550 PF01546 Peptidase family M20/M25/M40 J4N43_01555 PF01118 Semialdehyde dehydrogenase, NAD binding domain J4N43_01555 PF02774 Semialdehyde dehydrogenase, dimerisation domain J4N43_01560 PF00696 Amino acid kinase family J4N43_01565 PF00764 Arginosuccinate synthase J4N43_01580 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N43_01580 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4N43_01585 PF00462 Glutaredoxin J4N43_01585 PF08534 Redoxin J4N43_01590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_01590 PF03466 LysR substrate binding domain J4N43_01595 PF17092 Penicillin-binding protein OB-like domain J4N43_01595 PF00912 Transglycosylase J4N43_01595 PF00905 Penicillin binding protein transpeptidase domain J4N43_01605 PF05137 Fimbrial assembly protein (PilN) J4N43_01615 PF04351 Pilus assembly protein, PilP J4N43_01620 PF03958 Bacterial type II/III secretion system short domain J4N43_01620 PF11741 AMIN domain J4N43_01620 PF00263 Bacterial type II and III secretion system protein J4N43_01620 PF07660 Secretin and TonB N terminus short domain J4N43_01625 PF01202 Shikimate kinase J4N43_01630 PF01761 3-dehydroquinate synthase J4N43_01640 PF02086 D12 class N6 adenine-specific DNA methyltransferase J4N43_01645 PF00834 Ribulose-phosphate 3 epimerase family J4N43_01650 PF01250 Ribosomal protein S6 J4N43_01655 PF00436 Single-strand binding protein family J4N43_01660 PF01084 Ribosomal protein S18 J4N43_01665 PF03948 Ribosomal protein L9, C-terminal domain J4N43_01665 PF01281 Ribosomal protein L9, N-terminal domain J4N43_01675 PF03796 DnaB-like helicase C terminal domain J4N43_01675 PF00772 DnaB-like helicase N terminal domain J4N43_01680 PF00842 Alanine racemase, C-terminal domain J4N43_01680 PF01168 Alanine racemase, N-terminal domain J4N43_01685 PF01894 Uncharacterised protein family UPF0047 J4N43_01690 PF00342 Phosphoglucose isomerase J4N43_01700 PF01475 Ferric uptake regulator family J4N43_01705 PF01207 Dihydrouridine synthase (Dus) J4N43_01725 PF00175 Oxidoreductase NAD-binding domain J4N43_01725 PF00258 Flavodoxin J4N43_01725 PF00667 FAD binding domain J4N43_01730 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J4N43_01730 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain J4N43_01735 PF01507 Phosphoadenosine phosphosulfate reductase family J4N43_01790 PF00999 Sodium/hydrogen exchanger family J4N43_01795 PF02574 Homocysteine S-methyltransferase J4N43_01795 PF00809 Pterin binding enzyme J4N43_01795 PF02965 Vitamin B12 dependent methionine synthase, activation domain J4N43_01795 PF02607 B12 binding domain J4N43_01795 PF02310 B12 binding domain J4N43_01800 PF01842 ACT domain J4N43_01800 PF00696 Amino acid kinase family J4N43_01805 PF00266 Aminotransferase class-V J4N43_01815 PF17755 UvrA DNA-binding domain J4N43_01815 PF17760 UvrA interaction domain J4N43_01815 PF00005 ABC transporter J4N43_01820 PF00483 Nucleotidyl transferase J4N43_01825 PF00196 Bacterial regulatory proteins, luxR family J4N43_01830 PF00436 Single-strand binding protein family J4N43_01835 PF00563 EAL domain J4N43_01835 PF17157 Gammaproteobacterial periplasmic sensor domain J4N43_01835 PF00990 Diguanylate cyclase, GGDEF domain J4N43_01855 PF00263 Bacterial type II and III secretion system protein J4N43_01855 PF03958 Bacterial type II/III secretion system short domain J4N43_01860 PF01471 Putative peptidoglycan binding domain J4N43_01860 PF13401 AAA domain J4N43_01870 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J4N43_01870 PF00437 Type II/IV secretion system protein J4N43_01875 PF00482 Type II secretion system (T2SS), protein F J4N43_01885 PF07963 Prokaryotic N-terminal methylation motif J4N43_01920 PF04085 rod shape-determining protein MreC J4N43_01925 PF04093 rod shape-determining protein MreD J4N43_01930 PF02545 Maf-like protein J4N43_01935 PF10150 Ribonuclease E/G family J4N43_01935 PF00575 S1 RNA binding domain J4N43_01940 PF13502 AsmA-like C-terminal region J4N43_01940 PF13116 Protein of unknown function J4N43_01945 PF00795 Carbon-nitrogen hydrolase J4N43_01950 PF01523 Putative modulator of DNA gyrase J4N43_01955 PF02562 PhoH-like protein J4N43_01955 PF13638 PIN domain J4N43_01960 PF12137 RNA polymerase recycling family C-terminal J4N43_01960 PF00176 SNF2 family N-terminal domain J4N43_01960 PF18339 RapA N-terminal Tudor like domain 1 J4N43_01960 PF18337 RapA N-terminal Tudor like domain J4N43_01960 PF00271 Helicase conserved C-terminal domain J4N43_01970 PF00849 RNA pseudouridylate synthase J4N43_01975 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J4N43_01975 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N43_01980 PF04751 Protein of unknown function (DUF615) J4N43_01985 PF01523 Putative modulator of DNA gyrase J4N43_01990 PF01769 Divalent cation transporter J4N43_01990 PF03448 MgtE intracellular N domain J4N43_01990 PF00571 CBS domain J4N43_01995 PF00381 PTS HPr component phosphorylation site J4N43_02000 PF03668 P-loop ATPase protein family J4N43_02005 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N43_02010 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein J4N43_02015 PF00309 Sigma-54 factor, Activator interacting domain (AID) J4N43_02015 PF04963 Sigma-54 factor, core binding domain J4N43_02015 PF04552 Sigma-54, DNA binding domain J4N43_02020 PF00005 ABC transporter J4N43_02020 PF12399 Branched-chain amino acid ATP-binding cassette transporter J4N43_02025 PF03968 OstA-like protein J4N43_02035 PF01380 SIS domain J4N43_02035 PF00571 CBS domain J4N43_02040 PF01699 Sodium/calcium exchanger protein J4N43_02045 PF00005 ABC transporter J4N43_02050 PF02405 Permease MlaE J4N43_02055 PF02470 MlaD protein J4N43_02060 PF05494 MlaC protein J4N43_02070 PF01722 BolA-like protein J4N43_02075 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J4N43_02080 PF01553 Acyltransferase J4N43_02085 PF01042 Endoribonuclease L-PSP J4N43_02090 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain J4N43_02090 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain J4N43_02095 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J4N43_02095 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J4N43_02105 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J4N43_02105 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J4N43_02115 PF06877 Regulator of ribonuclease activity B J4N43_02125 PF00583 Acetyltransferase (GNAT) family J4N43_02140 PF04364 DNA polymerase III chi subunit, HolC J4N43_02145 PF00883 Cytosol aminopeptidase family, catalytic domain J4N43_02145 PF02789 Cytosol aminopeptidase family, N-terminal domain J4N43_02150 PF03739 Lipopolysaccharide export system permease LptF/LptG J4N43_02155 PF03739 Lipopolysaccharide export system permease LptF/LptG J4N43_02165 PF10011 Predicted membrane protein (DUF2254) J4N43_02180 PF01522 Polysaccharide deacetylase J4N43_02185 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N43_02190 PF02378 Phosphotransferase system, EIIC J4N43_02195 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit J4N43_02200 PF11975 Family 4 glycosyl hydrolase C-terminal domain J4N43_02200 PF02056 Family 4 glycosyl hydrolase J4N43_02205 PF04794 YdjC-like protein J4N43_02210 PF00356 Bacterial regulatory proteins, lacI family J4N43_02260 PF00171 Aldehyde dehydrogenase family J4N43_02290 PF00672 HAMP domain J4N43_02290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N43_02290 PF17200 Single Cache domain 2 J4N43_02330 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain J4N43_02330 PF01464 Transglycosylase SLT domain J4N43_02335 PF04362 Bacterial Fe(2+) trafficking J4N43_02340 PF00633 Helix-hairpin-helix motif J4N43_02340 PF14815 NUDIX domain J4N43_02340 PF00730 HhH-GPD superfamily base excision DNA repair protein J4N43_02345 PF02390 Putative methyltransferase J4N43_02350 PF02086 D12 class N6 adenine-specific DNA methyltransferase J4N43_02355 PF04960 Glutaminase J4N43_02360 PF06969 HemN C-terminal domain J4N43_02360 PF04055 Radical SAM superfamily J4N43_02365 PF01725 Ham1 family J4N43_02375 PF02594 Uncharacterised ACR, YggU family COG1872 J4N43_02380 PF02325 YGGT family J4N43_02385 PF03807 NADP oxidoreductase coenzyme F420-dependent J4N43_02385 PF14748 Pyrroline-5-carboxylate reductase dimerisation J4N43_02390 PF01168 Alanine racemase, N-terminal domain J4N43_02395 PF00437 Type II/IV secretion system protein J4N43_02400 PF00437 Type II/IV secretion system protein J4N43_02405 PF03652 Holliday junction resolvase J4N43_02410 PF02622 Uncharacterized ACR, COG1678 J4N43_02415 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain J4N43_02415 PF02951 Prokaryotic glutathione synthetase, N-terminal domain J4N43_02420 PF04452 RNA methyltransferase J4N43_02425 PF04231 Endonuclease I J4N43_02430 PF17283 SprT-like zinc ribbon domain J4N43_02430 PF10263 SprT-like family J4N43_02440 PF00438 S-adenosylmethionine synthetase, N-terminal domain J4N43_02440 PF02773 S-adenosylmethionine synthetase, C-terminal domain J4N43_02440 PF02772 S-adenosylmethionine synthetase, central domain J4N43_02445 PF02779 Transketolase, pyrimidine binding domain J4N43_02445 PF02780 Transketolase, C-terminal domain J4N43_02445 PF00456 Transketolase, thiamine diphosphate binding domain J4N43_02450 PF03466 LysR substrate binding domain J4N43_02450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_02455 PF07715 TonB-dependent Receptor Plug Domain J4N43_02455 PF00593 TonB dependent receptor J4N43_02460 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J4N43_02460 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J4N43_02465 PF00162 Phosphoglycerate kinase J4N43_02470 PF01116 Fructose-bisphosphate aldolase class-II J4N43_02475 PF05552 Conserved TM helix J4N43_02475 PF00924 Mechanosensitive ion channel J4N43_02485 PF01810 LysE type translocator J4N43_02490 PF03466 LysR substrate binding domain J4N43_02490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_02495 PF04402 Protein of unknown function (DUF541) J4N43_02500 PF01842 ACT domain J4N43_02500 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N43_02500 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J4N43_02505 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) J4N43_02510 PF01812 5-formyltetrahydrofolate cyclo-ligase family J4N43_02520 PF05164 Cell division protein ZapA J4N43_02525 PF03695 Uncharacterised protein family (UPF0149) J4N43_02530 PF01494 FAD binding domain J4N43_02535 PF01494 FAD binding domain J4N43_02555 PF03937 Flavinator of succinate dehydrogenase J4N43_02565 PF02910 Fumarate reductase flavoprotein C-term J4N43_02565 PF00890 FAD binding domain J4N43_02570 PF04542 Sigma-70 region 2 J4N43_02570 PF08281 Sigma-70, region 4 J4N43_02575 PF03873 Anti sigma-E protein RseA, C-terminal domain J4N43_02575 PF03872 Anti sigma-E protein RseA, N-terminal domain J4N43_02580 PF17188 MucB/RseB C-terminal domain J4N43_02580 PF03888 MucB/RseB N-terminal domain J4N43_02590 PF00679 Elongation factor G C-terminus J4N43_02590 PF03144 Elongation factor Tu domain 2 J4N43_02590 PF06421 GTP-binding protein LepA C-terminus J4N43_02590 PF00009 Elongation factor Tu GTP binding domain J4N43_02595 PF10502 Signal peptidase, peptidase S26 J4N43_02600 PF00035 Double-stranded RNA binding motif J4N43_02600 PF14622 Ribonuclease-III-like J4N43_02605 PF07650 KH domain J4N43_02605 PF01926 50S ribosome-binding GTPase J4N43_02610 PF02565 Recombination protein O C terminal J4N43_02610 PF11967 Recombination protein O N terminal J4N43_02615 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ J4N43_02620 PF01648 4'-phosphopantetheinyl transferase superfamily J4N43_02625 PF00672 HAMP domain J4N43_02625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_02625 PF00512 His Kinase A (phospho-acceptor) domain J4N43_02625 PF01627 Hpt domain J4N43_02625 PF00072 Response regulator receiver domain J4N43_02625 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J4N43_02630 PF01938 TRAM domain J4N43_02630 PF05958 tRNA (Uracil-5-)-methyltransferase J4N43_02635 PF13291 ACT domain J4N43_02635 PF04607 Region found in RelA / SpoT proteins J4N43_02635 PF02824 TGS domain J4N43_02640 PF03819 MazG nucleotide pyrophosphohydrolase domain J4N43_02645 PF00117 Glutamine amidotransferase class-I J4N43_02645 PF06418 CTP synthase N-terminus J4N43_02650 PF00113 Enolase, C-terminal TIM barrel domain J4N43_02650 PF03952 Enolase, N-terminal domain J4N43_02655 PF04977 Septum formation initiator J4N43_02660 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase J4N43_02665 PF02542 YgbB family J4N43_02670 PF01142 tRNA pseudouridine synthase D (TruD) J4N43_02675 PF01975 Survival protein SurE J4N43_02685 PF01476 LysM domain J4N43_02685 PF01551 Peptidase family M23 J4N43_02690 PF00140 Sigma-70 factor, region 1.2 J4N43_02690 PF04542 Sigma-70 region 2 J4N43_02690 PF04539 Sigma-70 region 3 J4N43_02690 PF04545 Sigma-70, region 4 J4N43_02695 PF05190 MutS family domain IV J4N43_02695 PF00488 MutS domain V J4N43_02695 PF05192 MutS domain III J4N43_02695 PF01624 MutS domain I J4N43_02695 PF05188 MutS domain II J4N43_02700 PF02464 Competence-damaged protein J4N43_02705 PF00154 recA bacterial DNA recombination protein J4N43_02710 PF02631 RecX family J4N43_02715 PF02272 DHHA1 domain J4N43_02715 PF01411 tRNA synthetases class II (A) J4N43_02715 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J4N43_02720 PF01842 ACT domain J4N43_02720 PF13840 ACT domain J4N43_02720 PF00696 Amino acid kinase family J4N43_02725 PF02599 Global regulator protein family J4N43_02780 PF04277 Oxaloacetate decarboxylase, gamma chain J4N43_02785 PF00364 Biotin-requiring enzyme J4N43_02785 PF00682 HMGL-like J4N43_02785 PF02436 Conserved carboxylase domain J4N43_02790 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit J4N43_02795 PF08240 Alcohol dehydrogenase GroES-like domain J4N43_02795 PF00107 Zinc-binding dehydrogenase J4N43_02800 PF09335 SNARE associated Golgi protein J4N43_02805 PF05193 Peptidase M16 inactive domain J4N43_02805 PF00675 Insulinase (Peptidase family M16) J4N43_02810 PF04262 Glutamate-cysteine ligase J4N43_02820 PF02664 S-Ribosylhomocysteinase (LuxS) J4N43_02825 PF00571 CBS domain J4N43_02825 PF03471 Transporter associated domain J4N43_02825 PF01595 Cyclin M transmembrane N-terminal domain J4N43_02835 PF02978 Signal peptide binding domain J4N43_02835 PF00448 SRP54-type protein, GTPase domain J4N43_02835 PF02881 SRP54-type protein, helical bundle domain J4N43_02840 PF00886 Ribosomal protein S16 J4N43_02845 PF01782 RimM N-terminal domain J4N43_02845 PF05239 PRC-barrel domain J4N43_02850 PF01746 tRNA (Guanine-1)-methyltransferase J4N43_02855 PF01245 Ribosomal protein L19 J4N43_02860 PF03884 DNA gyrase inhibitor YacG J4N43_02865 PF07072 Cell division protein J4N43_02870 PF01121 Dephospho-CoA kinase J4N43_02875 PF06750 Bacterial Peptidase A24 N-terminal domain J4N43_02875 PF01478 Type IV leader peptidase family J4N43_02880 PF00482 Type II secretion system (T2SS), protein F J4N43_02885 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J4N43_02885 PF00437 Type II/IV secretion system protein J4N43_02890 PF00114 Pilin (bacterial filament) J4N43_02890 PF07963 Prokaryotic N-terminal methylation motif J4N43_02895 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain J4N43_02895 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain J4N43_02900 PF01510 N-acetylmuramoyl-L-alanine amidase J4N43_02905 PF07729 FCD domain J4N43_02905 PF00392 Bacterial regulatory proteins, gntR family J4N43_02910 PF00456 Transketolase, thiamine diphosphate binding domain J4N43_02910 PF17831 Pyruvate dehydrogenase E1 component middle domain J4N43_02915 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J4N43_02915 PF00364 Biotin-requiring enzyme J4N43_02915 PF02817 e3 binding domain J4N43_02920 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N43_02920 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4N43_02925 PF00440 Bacterial regulatory proteins, tetR family J4N43_02930 PF00156 Phosphoribosyl transferase domain J4N43_02935 PF00484 Carbonic anhydrase J4N43_02940 PF00916 Sulfate permease family J4N43_02940 PF01740 STAS domain J4N43_02945 PF00005 ABC transporter J4N43_02950 PF01061 ABC-2 type transporter J4N43_02955 PF03279 Bacterial lipid A biosynthesis acyltransferase J4N43_02960 PF02569 Pantoate-beta-alanine ligase J4N43_02965 PF02548 Ketopantoate hydroxymethyltransferase J4N43_02970 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J4N43_02975 PF01743 Poly A polymerase head domain J4N43_02975 PF12626 Polymerase A arginine-rich C-terminus J4N43_02975 PF12627 Probable RNA and SrmB- binding site of polymerase A J4N43_02980 PF00749 tRNA synthetases class I (E and Q), catalytic domain J4N43_02985 PF01258 Prokaryotic dksA/traR C4-type zinc finger J4N43_02990 PF17746 SfsA N-terminal OB domain J4N43_02990 PF03749 Sugar fermentation stimulation protein RE domain J4N43_02995 PF00270 DEAD/DEAH box helicase J4N43_02995 PF04408 Helicase associated domain (HA2) J4N43_02995 PF00271 Helicase conserved C-terminal domain J4N43_02995 PF08482 ATP-dependent helicase C-terminal J4N43_03000 PF00905 Penicillin binding protein transpeptidase domain J4N43_03000 PF14814 Bifunctional transglycosylase second domain J4N43_03000 PF00912 Transglycosylase J4N43_03005 PF01734 Patatin-like phospholipase J4N43_03010 PF06434 Aconitate hydratase 2 N-terminus J4N43_03010 PF11791 Aconitate B N-terminal domain J4N43_03010 PF00330 Aconitase family (aconitate hydratase) J4N43_03015 PF06062 Uncharacterised protein family (UPF0231) J4N43_03020 PF00543 Nitrogen regulatory protein P-II J4N43_03025 PF00909 Ammonium Transporter Family J4N43_03030 PF13416 Bacterial extracellular solute-binding protein J4N43_03040 PF08402 TOBE domain J4N43_03040 PF00005 ABC transporter J4N43_03045 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J4N43_03045 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J4N43_03045 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J4N43_03045 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J4N43_03050 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain J4N43_03050 PF06165 Glycosyltransferase family 36 J4N43_03055 PF00728 Glycosyl hydrolase family 20, catalytic domain J4N43_03055 PF02838 Glycosyl hydrolase family 20, domain 2 J4N43_03060 PF01869 BadF/BadG/BcrA/BcrD ATPase family J4N43_03070 PF00005 ABC transporter J4N43_03070 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N43_03075 PF00005 ABC transporter J4N43_03075 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N43_03080 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_03080 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N43_03085 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_03090 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N43_03095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_03095 PF00512 His Kinase A (phospho-acceptor) domain J4N43_03095 PF09308 LuxQ, periplasmic J4N43_03095 PF00072 Response regulator receiver domain J4N43_03100 PF05175 Methyltransferase small domain J4N43_03100 PF08468 Methyltransferase small domain N-terminal J4N43_03105 PF01594 AI-2E family transporter J4N43_03110 PF00202 Aminotransferase class-III J4N43_03115 PF01521 Iron-sulphur cluster biosynthesis J4N43_03125 PF00873 AcrB/AcrD/AcrF family J4N43_03130 PF01476 LysM domain J4N43_03130 PF08525 Opacity-associated protein A N-terminal motif J4N43_03130 PF01551 Peptidase family M23 J4N43_03135 PF00579 tRNA synthetases class I (W and Y) J4N43_03145 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family J4N43_03150 PF13609 Gram-negative porin J4N43_03155 PF01272 Transcription elongation factor, GreA/GreB, C-term J4N43_03155 PF03449 Transcription elongation factor, N-terminal J4N43_03160 PF01985 CRS1 / YhbY (CRM) domain J4N43_03165 PF01728 FtsJ-like methyltransferase J4N43_03170 PF06480 FtsH Extracellular J4N43_03170 PF17862 AAA+ lid domain J4N43_03170 PF00004 ATPase family associated with various cellular activities (AAA) J4N43_03170 PF01434 Peptidase family M41 J4N43_03175 PF00809 Pterin binding enzyme J4N43_03180 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J4N43_03180 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J4N43_03180 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J4N43_03180 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J4N43_03185 PF03840 Preprotein translocase SecG subunit J4N43_03200 PF02576 RimP N-terminal domain J4N43_03200 PF17384 RimP C-terminal SH3 domain J4N43_03205 PF08529 NusA N-terminal domain J4N43_03205 PF00575 S1 RNA binding domain J4N43_03205 PF13184 NusA-like KH domain J4N43_03210 PF08364 Bacterial translation initiation factor IF-2 associated region J4N43_03210 PF11987 Translation-initiation factor 2 J4N43_03210 PF00009 Elongation factor Tu GTP binding domain J4N43_03210 PF04760 Translation initiation factor IF-2, N-terminal region J4N43_03215 PF02033 Ribosome-binding factor A J4N43_03220 PF01509 TruB family pseudouridylate synthase (N terminal domain) J4N43_03220 PF09157 Pseudouridine synthase II TruB, C-terminal J4N43_03220 PF16198 tRNA pseudouridylate synthase B C-terminal domain J4N43_03225 PF00312 Ribosomal protein S15 J4N43_03230 PF00013 KH domain J4N43_03230 PF01138 3' exoribonuclease family, domain 1 J4N43_03230 PF03725 3' exoribonuclease family, domain 2 J4N43_03230 PF00575 S1 RNA binding domain J4N43_03230 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain J4N43_03235 PF13181 Tetratricopeptide repeat J4N43_03235 PF07719 Tetratricopeptide repeat J4N43_03245 PF01554 MatE J4N43_03250 PF01136 Peptidase family U32 J4N43_03255 PF01136 Peptidase family U32 J4N43_03260 PF00563 EAL domain J4N43_03260 PF03707 Bacterial signalling protein N terminal repeat J4N43_03260 PF00990 Diguanylate cyclase, GGDEF domain J4N43_03265 PF02036 SCP-2 sterol transfer family J4N43_03270 PF13508 Acetyltransferase (GNAT) domain J4N43_03290 PF00009 Elongation factor Tu GTP binding domain J4N43_03290 PF03144 Elongation factor Tu domain 2 J4N43_03290 PF16658 Class II release factor RF3, C-terminal domain J4N43_03300 PF01026 TatD related DNase J4N43_03305 PF01773 Na+ dependent nucleoside transporter N-terminus J4N43_03305 PF07670 Nucleoside recognition J4N43_03305 PF07662 Na+ dependent nucleoside transporter C-terminus J4N43_03310 PF01791 DeoC/LacD family aldolase J4N43_03315 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain J4N43_03315 PF00591 Glycosyl transferase family, a/b domain J4N43_03315 PF02885 Glycosyl transferase family, helical bundle domain J4N43_03320 PF01676 Metalloenzyme superfamily J4N43_03325 PF01048 Phosphorylase superfamily J4N43_03335 PF18429 Domain of unknown function (DUF5609) J4N43_03345 PF18073 Rubredoxin metal binding domain J4N43_03350 PF00679 Elongation factor G C-terminus J4N43_03350 PF03764 Elongation factor G, domain IV J4N43_03350 PF00009 Elongation factor Tu GTP binding domain J4N43_03350 PF03144 Elongation factor Tu domain 2 J4N43_03350 PF14492 Elongation Factor G, domain II J4N43_03355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_03355 PF03466 LysR substrate binding domain J4N43_03365 PF00501 AMP-binding enzyme J4N43_03395 PF00196 Bacterial regulatory proteins, luxR family J4N43_03405 PF03466 LysR substrate binding domain J4N43_03405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_03410 PF00356 Bacterial regulatory proteins, lacI family J4N43_03430 PF01544 CorA-like Mg2+ transporter protein J4N43_03435 PF01266 FAD dependent oxidoreductase J4N43_03435 PF16901 C-terminal domain of alpha-glycerophosphate oxidase J4N43_03440 PF08220 DeoR-like helix-turn-helix domain J4N43_03440 PF00455 DeoR C terminal sensor domain J4N43_03445 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J4N43_03445 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J4N43_03450 PF00230 Major intrinsic protein J4N43_03455 PF07690 Major Facilitator Superfamily J4N43_03460 PF03009 Glycerophosphoryl diester phosphodiesterase family J4N43_03465 PF14602 Hexapeptide repeat of succinyl-transferase J4N43_03465 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle J4N43_03480 PF07130 YebG protein J4N43_03485 PF03466 LysR substrate binding domain J4N43_03485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_03495 PF11893 Domain of unknown function (DUF3413) J4N43_03495 PF00884 Sulfatase J4N43_03500 PF17946 RecC C-terminal domain J4N43_03505 PF00580 UvrD/REP helicase N-terminal domain J4N43_03505 PF13361 UvrD-like helicase C-terminal domain J4N43_03505 PF12705 PD-(D/E)XK nuclease superfamily J4N43_03510 PF13538 UvrD-like helicase C-terminal domain J4N43_03520 PF00696 Amino acid kinase family J4N43_03520 PF00583 Acetyltransferase (GNAT) family J4N43_03530 PF06725 3D domain J4N43_03530 PF03562 MltA specific insert domain J4N43_03535 PF00899 ThiF family J4N43_03540 PF02657 Fe-S metabolism associated domain J4N43_03545 PF00990 Diguanylate cyclase, GGDEF domain J4N43_03545 PF17158 Membrane-associated sensor, integral membrane domain J4N43_03550 PF00266 Aminotransferase class-V J4N43_03555 PF01965 DJ-1/PfpI family J4N43_03560 PF08546 Ketopantoate reductase PanE/ApbA C terminal J4N43_03560 PF02558 Ketopantoate reductase PanE/ApbA J4N43_03565 PF03502 Nucleoside-specific channel-forming protein, Tsx J4N43_03580 PF04542 Sigma-70 region 2 J4N43_03580 PF04545 Sigma-70, region 4 J4N43_03590 PF07690 Major Facilitator Superfamily J4N43_03595 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J4N43_03600 PF03923 Uncharacterized lipoprotein J4N43_03600 PF08139 Prokaryotic membrane lipoprotein lipid attachment site J4N43_03605 PF05175 Methyltransferase small domain J4N43_03610 PF01722 BolA-like protein J4N43_03615 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) J4N43_03615 PF11973 NQRA C-terminal domain J4N43_03620 PF03116 NQR2, RnfD, RnfE family J4N43_03625 PF04205 FMN-binding domain J4N43_03630 PF02508 Rnf-Nqr subunit, membrane protein J4N43_03635 PF02508 Rnf-Nqr subunit, membrane protein J4N43_03640 PF00175 Oxidoreductase NAD-binding domain J4N43_03640 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N43_03640 PF00970 Oxidoreductase FAD-binding domain J4N43_03645 PF02424 ApbE family J4N43_03655 PF00990 Diguanylate cyclase, GGDEF domain J4N43_03655 PF00072 Response regulator receiver domain J4N43_03665 PF00817 impB/mucB/samB family J4N43_03665 PF11799 impB/mucB/samB family C-terminal domain J4N43_03665 PF11798 IMS family HHH motif J4N43_03670 PF00270 DEAD/DEAH box helicase J4N43_03670 PF00271 Helicase conserved C-terminal domain J4N43_03670 PF00570 HRDC domain J4N43_03670 PF16124 RecQ zinc-binding J4N43_03670 PF09382 RQC domain J4N43_03675 PF01272 Transcription elongation factor, GreA/GreB, C-term J4N43_03675 PF03449 Transcription elongation factor, N-terminal J4N43_03685 PF00704 Glycosyl hydrolases family 18 J4N43_03685 PF06483 Chitinase C J4N43_03690 PF00209 Sodium:neurotransmitter symporter family J4N43_03700 PF06786 Uncharacterised protein family (UPF0253) J4N43_03710 PF03129 Anticodon binding domain J4N43_03710 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J4N43_03710 PF04073 Aminoacyl-tRNA editing domain J4N43_03715 PF01980 tRNA-methyltransferase O J4N43_03715 PF18389 TrmO C-terminal domain J4N43_03720 PF01197 Ribosomal protein L31 J4N43_03725 PF00444 Ribosomal protein L36 J4N43_03730 PF03806 AbgT putative transporter family J4N43_03755 PF01370 NAD dependent epimerase/dehydratase family J4N43_03765 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 J4N43_03790 PF04287 tRNA pseudouridine synthase C J4N43_03795 PF00849 RNA pseudouridylate synthase J4N43_03800 PF11944 Protein of unknown function (DUF3461) J4N43_03805 PF08335 GlnD PII-uridylyltransferase J4N43_03805 PF01966 HD domain J4N43_03805 PF01909 Nucleotidyltransferase domain J4N43_03805 PF01842 ACT domain J4N43_03810 PF00557 Metallopeptidase family M24 J4N43_03815 PF00318 Ribosomal protein S2 J4N43_03820 PF00889 Elongation factor TS J4N43_03825 PF00696 Amino acid kinase family J4N43_03830 PF01765 Ribosome recycling factor J4N43_03835 PF01255 Putative undecaprenyl diphosphate synthase J4N43_03845 PF13288 DXP reductoisomerase C-terminal domain J4N43_03845 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain J4N43_03845 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase J4N43_03850 PF02163 Peptidase family M50 J4N43_03850 PF17820 PDZ domain J4N43_03855 PF07244 Surface antigen variable number repeat J4N43_03855 PF01103 Surface antigen J4N43_03860 PF03938 Outer membrane protein (OmpH-like) J4N43_03865 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD J4N43_03865 PF00132 Bacterial transferase hexapeptide (six repeats) J4N43_03870 PF07977 FabA-like domain J4N43_03875 PF00132 Bacterial transferase hexapeptide (six repeats) J4N43_03875 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 J4N43_03880 PF02684 Lipid-A-disaccharide synthetase J4N43_03885 PF01351 Ribonuclease HII J4N43_03890 PF01336 OB-fold nucleic acid binding domain J4N43_03890 PF07733 Bacterial DNA polymerase III alpha NTPase domain J4N43_03890 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J4N43_03890 PF14579 Helix-hairpin-helix motif J4N43_03890 PF02811 PHP domain J4N43_03895 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit J4N43_03900 PF11734 TilS substrate C-terminal domain J4N43_03900 PF09179 TilS substrate binding domain J4N43_03900 PF01171 PP-loop family J4N43_03905 PF00034 Cytochrome c J4N43_03910 PF00543 Nitrogen regulatory protein P-II J4N43_03915 PF03372 Endonuclease/Exonuclease/phosphatase family J4N43_03930 PF16123 Hydroxyacylglutathione hydrolase C-terminus J4N43_03930 PF00753 Metallo-beta-lactamase superfamily J4N43_03935 PF08241 Methyltransferase domain J4N43_03940 PF00075 RNase H J4N43_03945 PF00929 Exonuclease J4N43_03970 PF01740 STAS domain J4N43_03970 PF00916 Sulfate permease family J4N43_03975 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J4N43_03975 PF09317 Domain of unknown function (DUF1974) J4N43_03975 PF02770 Acyl-CoA dehydrogenase, middle domain J4N43_03975 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J4N43_03980 PF13580 SIS domain J4N43_03985 PF13230 Glutamine amidotransferases class-II J4N43_03990 PF00551 Formyl transferase J4N43_03995 PF00586 AIR synthase related protein, N-terminal domain J4N43_03995 PF02769 AIR synthase related protein, C-terminal domain J4N43_04005 PF00860 Permease family J4N43_04020 PF03358 NADPH-dependent FMN reductase J4N43_04025 PF03960 ArsC family J4N43_04030 PF01435 Peptidase family M48 J4N43_04030 PF13181 Tetratricopeptide repeat J4N43_04040 PF01594 AI-2E family transporter J4N43_04045 PF00578 AhpC/TSA family J4N43_04055 PF00701 Dihydrodipicolinate synthetase family J4N43_04060 PF06804 NlpB/DapX lipoprotein J4N43_04075 PF07687 Peptidase dimerisation domain J4N43_04075 PF01546 Peptidase family M20/M25/M40 J4N43_04080 PF03960 ArsC family J4N43_04100 PF11143 Protein of unknown function (DUF2919) J4N43_04105 PF04261 Dyp-type peroxidase family J4N43_04110 PF00700 Bacterial flagellin C-terminal helical region J4N43_04110 PF07196 Flagellin hook IN motif J4N43_04110 PF00669 Bacterial flagellin N-terminal helical region J4N43_04115 PF00700 Bacterial flagellin C-terminal helical region J4N43_04115 PF07196 Flagellin hook IN motif J4N43_04115 PF00669 Bacterial flagellin N-terminal helical region J4N43_04120 PF00700 Bacterial flagellin C-terminal helical region J4N43_04120 PF07196 Flagellin hook IN motif J4N43_04120 PF00669 Bacterial flagellin N-terminal helical region J4N43_04125 PF03646 FlaG protein J4N43_04130 PF07196 Flagellin hook IN motif J4N43_04130 PF07195 Flagellar hook-associated protein 2 C-terminus J4N43_04130 PF02465 Flagellar hook-associated protein 2 N-terminus J4N43_04140 PF02561 Flagellar protein FliS J4N43_04145 PF06490 Flagellar regulatory protein FleQ J4N43_04145 PF00158 Sigma-54 interaction domain J4N43_04145 PF02954 Bacterial regulatory protein, Fis family J4N43_04150 PF13188 PAS domain J4N43_04150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_04150 PF00512 His Kinase A (phospho-acceptor) domain J4N43_04155 PF02954 Bacterial regulatory protein, Fis family J4N43_04155 PF00072 Response regulator receiver domain J4N43_04155 PF00158 Sigma-54 interaction domain J4N43_04160 PF02049 Flagellar hook-basal body complex protein FliE J4N43_04165 PF01514 Secretory protein of YscJ/FliF family J4N43_04165 PF08345 Flagellar M-ring protein C-terminal J4N43_04170 PF14841 FliG middle domain J4N43_04170 PF01706 FliG C-terminal domain J4N43_04170 PF14842 FliG N-terminal domain J4N43_04180 PF18269 T3SS EscN ATPase C-terminal domain J4N43_04180 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N43_04210 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J4N43_04210 PF02154 Flagellar motor switch protein FliM J4N43_04215 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J4N43_04220 PF04347 Flagellar biosynthesis protein, FliO J4N43_04225 PF00813 FliP family J4N43_04230 PF01313 Bacterial export proteins, family 3 J4N43_04235 PF01311 Bacterial export proteins, family 1 J4N43_04240 PF01312 FlhB HrpN YscU SpaS Family J4N43_04245 PF00771 FHIPEP family J4N43_04250 PF00448 SRP54-type protein, GTPase domain J4N43_04255 PF10609 NUBPL iron-transfer P-loop NTPase J4N43_04260 PF04545 Sigma-70, region 4 J4N43_04260 PF04542 Sigma-70 region 2 J4N43_04260 PF04539 Sigma-70 region 3 J4N43_04265 PF00072 Response regulator receiver domain J4N43_04270 PF04344 Chemotaxis phosphatase, CheZ J4N43_04275 PF01584 CheW-like domain J4N43_04275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_04275 PF02895 Signal transducing histidine kinase, homodimeric domain J4N43_04275 PF00072 Response regulator receiver domain J4N43_04275 PF01627 Hpt domain J4N43_04280 PF01339 CheB methylesterase J4N43_04280 PF00072 Response regulator receiver domain J4N43_04285 PF13614 AAA domain J4N43_04295 PF01584 CheW-like domain J4N43_04305 PF00005 ABC transporter J4N43_04310 PF03379 CcmB protein J4N43_04315 PF01578 Cytochrome C assembly protein J4N43_04320 PF04995 Heme exporter protein D (CcmD) J4N43_04325 PF03100 CcmE J4N43_04330 PF01578 Cytochrome C assembly protein J4N43_04330 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal J4N43_04335 PF08534 Redoxin J4N43_04340 PF03918 Cytochrome C biogenesis protein J4N43_04345 PF03918 Cytochrome C biogenesis protein J4N43_04350 PF04333 MlaA lipoprotein J4N43_04355 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J4N43_04360 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J4N43_04370 PF04542 Sigma-70 region 2 J4N43_04370 PF08281 Sigma-70, region 4 J4N43_04375 PF02803 Thiolase, C-terminal domain J4N43_04375 PF00108 Thiolase, N-terminal domain J4N43_04380 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J4N43_04380 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J4N43_04380 PF00378 Enoyl-CoA hydratase/isomerase J4N43_04390 PF16187 Middle or third domain of peptidase_M16 J4N43_04390 PF00675 Insulinase (Peptidase family M16) J4N43_04390 PF05193 Peptidase M16 inactive domain J4N43_04395 PF00300 Histidine phosphatase superfamily (branch 1) J4N43_04400 PF01713 Smr domain J4N43_04405 PF05175 Methyltransferase small domain J4N43_04410 PF01264 Chorismate synthase J4N43_04415 PF03458 UPF0126 domain J4N43_04420 PF04315 Elongation factor P hydroxylase J4N43_04425 PF08891 YfcL protein J4N43_04430 PF03358 NADPH-dependent FMN reductase J4N43_04435 PF01266 FAD dependent oxidoreductase J4N43_04435 PF05430 S-adenosyl-L-methionine-dependent methyltransferase J4N43_04440 PF00109 Beta-ketoacyl synthase, N-terminal domain J4N43_04440 PF02801 Beta-ketoacyl synthase, C-terminal domain J4N43_04445 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N43_04445 PF11890 Domain of unknown function (DUF3410) J4N43_04445 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J4N43_04450 PF01118 Semialdehyde dehydrogenase, NAD binding domain J4N43_04450 PF02774 Semialdehyde dehydrogenase, dimerisation domain J4N43_04460 PF01416 tRNA pseudouridine synthase J4N43_04465 PF01039 Carboxyl transferase domain J4N43_04465 PF17848 Acetyl-coA carboxylase zinc finger domain J4N43_04470 PF02875 Mur ligase family, glutamate ligase domain J4N43_04470 PF08245 Mur ligase middle domain J4N43_04475 PF05036 Sporulation related domain J4N43_04480 PF02674 Colicin V production protein J4N43_04485 PF00156 Phosphoribosyl transferase domain J4N43_04490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_04490 PF03466 LysR substrate binding domain J4N43_04495 PF00072 Response regulator receiver domain J4N43_04500 PF04304 Protein of unknown function (DUF454) J4N43_04505 PF00156 Phosphoribosyl transferase domain J4N43_04510 PF12170 DNA polymerase III tau subunit V interacting with alpha J4N43_04510 PF12169 DNA polymerase III subunits gamma and tau domain III J4N43_04510 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding J4N43_04515 PF02575 YbaB/EbfC DNA-binding family J4N43_04520 PF02132 RecR protein J4N43_04520 PF13662 Toprim domain J4N43_04525 PF00230 Major intrinsic protein J4N43_04530 PF03692 Putative zinc- or iron-chelating domain J4N43_04535 PF04226 Transglycosylase associated protein J4N43_04540 PF03692 Putative zinc- or iron-chelating domain J4N43_04595 PF00924 Mechanosensitive ion channel J4N43_04595 PF05552 Conserved TM helix J4N43_04600 PF03992 Antibiotic biosynthesis monooxygenase J4N43_04605 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N43_04615 PF00245 Alkaline phosphatase J4N43_04630 PF13847 Methyltransferase domain J4N43_04635 PF08447 PAS fold J4N43_04635 PF13426 PAS domain J4N43_04635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N43_04640 PF01263 Aldose 1-epimerase J4N43_04645 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J4N43_04645 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J4N43_04650 PF01641 SelR domain J4N43_04660 PF07023 Protein of unknown function (DUF1315) J4N43_04665 PF00710 Asparaginase, N-terminal J4N43_04665 PF17763 Glutaminase/Asparaginase C-terminal domain J4N43_04670 PF01343 Peptidase family S49 J4N43_04675 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J4N43_04675 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N43_04685 PF00881 Nitroreductase family J4N43_04690 PF01131 DNA topoisomerase J4N43_04690 PF01751 Toprim domain J4N43_04700 PF00106 short chain dehydrogenase J4N43_04705 PF00850 Histone deacetylase domain J4N43_04715 PF00884 Sulfatase J4N43_04715 PF11893 Domain of unknown function (DUF3413) J4N43_04720 PF07208 Protein of unknown function (DUF1414) J4N43_04725 PF04245 37-kD nucleoid-associated bacterial protein J4N43_04740 PF03553 Na+/H+ antiporter family J4N43_04745 PF02774 Semialdehyde dehydrogenase, dimerisation domain J4N43_04745 PF01118 Semialdehyde dehydrogenase, NAD binding domain J4N43_04750 PF00027 Cyclic nucleotide-binding domain J4N43_04750 PF00520 Ion transport protein J4N43_04755 PF01914 MarC family integral membrane protein J4N43_04760 PF00171 Aldehyde dehydrogenase family J4N43_04760 PF00465 Iron-containing alcohol dehydrogenase J4N43_04775 PF02777 Iron/manganese superoxide dismutases, C-terminal domain J4N43_04775 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain J4N43_04780 PF00462 Glutaredoxin J4N43_04800 PF02899 Phage integrase, N-terminal SAM-like domain J4N43_04800 PF00589 Phage integrase family J4N43_04845 PF06892 Phage regulatory protein CII (CP76) J4N43_04885 PF05840 Bacteriophage replication gene A protein (GPA) J4N43_05040 PF13726 Na+-H+ antiporter family J4N43_05040 PF03553 Na+/H+ antiporter family J4N43_05045 PF00929 Exonuclease J4N43_05050 PF18393 MotY N-terminal domain J4N43_05050 PF00691 OmpA family J4N43_05055 PF10952 Protein of unknown function (DUF2753) J4N43_05060 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N43_05065 PF10576 Iron-sulfur binding domain of endonuclease III J4N43_05065 PF00633 Helix-hairpin-helix motif J4N43_05065 PF00730 HhH-GPD superfamily base excision DNA repair protein J4N43_05070 PF02508 Rnf-Nqr subunit, membrane protein J4N43_05075 PF04205 FMN-binding domain J4N43_05080 PF03116 NQR2, RnfD, RnfE family J4N43_05085 PF13375 RnfC Barrel sandwich hybrid domain J4N43_05085 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit J4N43_05085 PF10531 SLBB domain J4N43_05085 PF12838 4Fe-4S dicluster domain J4N43_05090 PF04060 Putative Fe-S cluster J4N43_05095 PF02508 Rnf-Nqr subunit, membrane protein J4N43_05100 PF01228 Glycine radical J4N43_05100 PF02901 Pyruvate formate lyase-like J4N43_05110 PF00271 Helicase conserved C-terminal domain J4N43_05110 PF04851 Type III restriction enzyme, res subunit J4N43_05110 PF12344 Ultra-violet resistance protein B J4N43_05110 PF02151 UvrB/uvrC motif J4N43_05110 PF17757 UvrB interaction domain J4N43_05115 PF02954 Bacterial regulatory protein, Fis family J4N43_05115 PF00158 Sigma-54 interaction domain J4N43_05115 PF00072 Response regulator receiver domain J4N43_05120 PF01627 Hpt domain J4N43_05125 PF01933 Uncharacterised protein family UPF0052 J4N43_05130 PF04055 Radical SAM superfamily J4N43_05130 PF06463 Molybdenum Cofactor Synthesis C J4N43_05135 PF00994 Probable molybdopterin binding domain J4N43_05140 PF01967 MoaC family J4N43_05145 PF02597 ThiS family J4N43_05150 PF02391 MoaE protein J4N43_05155 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N43_05160 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_05165 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_05165 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N43_05170 PF00005 ABC transporter J4N43_05170 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N43_05175 PF00005 ABC transporter J4N43_05175 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N43_05180 PF13409 Glutathione S-transferase, N-terminal domain J4N43_05190 PF07085 DRTGG domain J4N43_05190 PF01515 Phosphate acetyl/butaryl transferase J4N43_05195 PF00871 Acetokinase family J4N43_05200 PF04217 Protein of unknown function, DUF412 J4N43_05210 PF02653 Branched-chain amino acid transport system / permease component J4N43_05215 PF00005 ABC transporter J4N43_05220 PF00128 Alpha amylase, catalytic domain J4N43_05220 PF02903 Alpha amylase, N-terminal ig-like domain J4N43_05225 PF00990 Diguanylate cyclase, GGDEF domain J4N43_05225 PF17158 Membrane-associated sensor, integral membrane domain J4N43_05230 PF01207 Dihydrouridine synthase (Dus) J4N43_05235 PF02810 SEC-C motif J4N43_05235 PF03695 Uncharacterised protein family (UPF0149) J4N43_05240 PF02600 Disulfide bond formation protein DsbB J4N43_05245 PF06450 Bacterial Na+/H+ antiporter B (NhaB) J4N43_05250 PF07840 FadR C-terminal domain J4N43_05250 PF00392 Bacterial regulatory proteins, gntR family J4N43_05275 PF09334 tRNA synthetases class I (M) J4N43_05275 PF01588 Putative tRNA binding domain J4N43_05280 PF10609 NUBPL iron-transfer P-loop NTPase J4N43_05285 PF00485 Phosphoribulokinase / Uridine kinase family J4N43_05295 PF12557 Cob(I)alamin adenosyltransferase N terminal J4N43_05295 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP J4N43_05300 PF01451 Low molecular weight phosphotyrosine protein phosphatase J4N43_05305 PF01740 STAS domain J4N43_05305 PF00916 Sulfate permease family J4N43_05310 PF10150 Ribonuclease E/G family J4N43_05310 PF00575 S1 RNA binding domain J4N43_05310 PF12111 Polyribonucleotide phosphorylase C terminal J4N43_05315 PF00849 RNA pseudouridylate synthase J4N43_05315 PF01479 S4 domain J4N43_05320 PF02545 Maf-like protein J4N43_05325 PF02620 Large ribosomal RNA subunit accumulation protein YceD J4N43_05330 PF01783 Ribosomal L32p protein family J4N43_05335 PF02504 Fatty acid synthesis protein J4N43_05340 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J4N43_05340 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J4N43_05345 PF00698 Acyl transferase domain J4N43_05355 PF00550 Phosphopantetheine attachment site J4N43_05360 PF00109 Beta-ketoacyl synthase, N-terminal domain J4N43_05360 PF02801 Beta-ketoacyl synthase, C-terminal domain J4N43_05365 PF01063 Amino-transferase class IV J4N43_05370 PF02618 YceG-like family J4N43_05375 PF02223 Thymidylate kinase J4N43_05380 PF09115 DNA polymerase III, delta subunit, C terminal J4N43_05385 PF01026 TatD related DNase J4N43_05390 PF00367 phosphotransferase system, EIIB J4N43_05390 PF02378 Phosphotransferase system, EIIC J4N43_05405 PF00209 Sodium:neurotransmitter symporter family J4N43_05420 PF01734 Patatin-like phospholipase J4N43_05425 PF00224 Pyruvate kinase, barrel domain J4N43_05425 PF02887 Pyruvate kinase, alpha/beta domain J4N43_05430 PF00480 ROK family J4N43_05435 PF00072 Response regulator receiver domain J4N43_05435 PF01584 CheW-like domain J4N43_05440 PF01336 OB-fold nucleic acid binding domain J4N43_05440 PF02811 PHP domain J4N43_05440 PF14579 Helix-hairpin-helix motif J4N43_05440 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J4N43_05440 PF07733 Bacterial DNA polymerase III alpha NTPase domain J4N43_05455 PF00106 short chain dehydrogenase J4N43_05460 PF08496 Peptidase family S49 N-terminal J4N43_05460 PF01343 Peptidase family S49 J4N43_05465 PF02224 Cytidylate kinase J4N43_05470 PF00575 S1 RNA binding domain J4N43_05475 PF00216 Bacterial DNA-binding protein J4N43_05480 PF06305 Lipopolysaccharide assembly protein A domain J4N43_05485 PF18073 Rubredoxin metal binding domain J4N43_05490 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family J4N43_05495 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N43_05515 PF02470 MlaD protein J4N43_05520 PF04403 Paraquat-inducible protein A J4N43_05525 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J4N43_05530 PF00034 Cytochrome c J4N43_05535 PF00384 Molybdopterin oxidoreductase J4N43_05535 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J4N43_05535 PF01568 Molydopterin dinucleotide binding domain J4N43_05540 PF03916 Polysulphide reductase, NrfD J4N43_05545 PF13247 4Fe-4S dicluster domain J4N43_05550 PF00512 His Kinase A (phospho-acceptor) domain J4N43_05550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_05555 PF00072 Response regulator receiver domain J4N43_05555 PF00196 Bacterial regulatory proteins, luxR family J4N43_05565 PF11412 Disulphide bond corrector protein DsbC J4N43_05565 PF02683 Cytochrome C biogenesis protein transmembrane region J4N43_05570 PF00085 Thioredoxin J4N43_05580 PF05958 tRNA (Uracil-5-)-methyltransferase J4N43_05595 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N43_05605 PF12704 MacB-like periplasmic core domain J4N43_05605 PF02687 FtsX-like permease family J4N43_05605 PF00005 ABC transporter J4N43_05610 PF12704 MacB-like periplasmic core domain J4N43_05610 PF02687 FtsX-like permease family J4N43_05610 PF00005 ABC transporter J4N43_05615 PF00005 ABC transporter J4N43_05615 PF02687 FtsX-like permease family J4N43_05615 PF12704 MacB-like periplasmic core domain J4N43_05635 PF08267 Cobalamin-independent synthase, N-terminal domain J4N43_05635 PF01717 Cobalamin-independent synthase, Catalytic domain J4N43_05645 PF00529 HlyD membrane-fusion protein of T1SS J4N43_05645 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N43_05650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_05650 PF03466 LysR substrate binding domain J4N43_05670 PF00512 His Kinase A (phospho-acceptor) domain J4N43_05670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_05670 PF00672 HAMP domain J4N43_05675 PF00486 Transcriptional regulatory protein, C terminal J4N43_05675 PF00072 Response regulator receiver domain J4N43_05680 PF00535 Glycosyl transferase family 2 J4N43_05685 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase J4N43_05715 PF08448 PAS fold J4N43_05715 PF00990 Diguanylate cyclase, GGDEF domain J4N43_05715 PF08447 PAS fold J4N43_05715 PF00563 EAL domain J4N43_05730 PF03466 LysR substrate binding domain J4N43_05730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_05735 PF08267 Cobalamin-independent synthase, N-terminal domain J4N43_05735 PF01717 Cobalamin-independent synthase, Catalytic domain J4N43_05745 PF03795 YCII-related domain J4N43_05750 PF03061 Thioesterase superfamily J4N43_05755 PF04279 Intracellular septation protein A J4N43_05765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_05765 PF00072 Response regulator receiver domain J4N43_05770 PF17327 Acyl homoserine lactone synthase J4N43_05775 PF00375 Sodium:dicarboxylate symporter family J4N43_05780 PF00501 AMP-binding enzyme J4N43_05780 PF13193 AMP-binding enzyme C-terminal domain J4N43_05785 PF13545 Crp-like helix-turn-helix domain J4N43_05785 PF00027 Cyclic nucleotide-binding domain J4N43_05790 PF00290 Tryptophan synthase alpha chain J4N43_05795 PF00291 Pyridoxal-phosphate dependent enzyme J4N43_05800 PF00218 Indole-3-glycerol phosphate synthase J4N43_05800 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase J4N43_05805 PF02885 Glycosyl transferase family, helical bundle domain J4N43_05805 PF00591 Glycosyl transferase family, a/b domain J4N43_05810 PF00117 Glutamine amidotransferase class-I J4N43_05815 PF00425 chorismate binding enzyme J4N43_05815 PF04715 Anthranilate synthase component I, N terminal region J4N43_05820 PF08056 Tryptophan operon leader peptide J4N43_05825 PF02811 PHP domain J4N43_05830 PF01300 Telomere recombination J4N43_05840 PF01479 S4 domain J4N43_05840 PF00849 RNA pseudouridylate synthase J4N43_05845 PF04269 Protein of unknown function, DUF440 J4N43_05850 PF09285 Elongation factor P, C-terminal J4N43_05850 PF08207 Elongation factor P (EF-P) KOW-like domain J4N43_05850 PF01132 Elongation factor P (EF-P) OB domain J4N43_05860 PF00136 DNA polymerase family B J4N43_05860 PF03104 DNA polymerase family B, exonuclease domain J4N43_05865 PF00072 Response regulator receiver domain J4N43_05865 PF00196 Bacterial regulatory proteins, luxR family J4N43_05870 PF01541 GIY-YIG catalytic domain J4N43_05870 PF02151 UvrB/uvrC motif J4N43_05870 PF08459 UvrC Helix-hairpin-helix N-terminal J4N43_05875 PF01066 CDP-alcohol phosphatidyltransferase J4N43_05900 PF00202 Aminotransferase class-III J4N43_05905 PF03435 Saccharopine dehydrogenase NADP binding domain J4N43_05905 PF16653 Saccharopine dehydrogenase C-terminal domain J4N43_05910 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain J4N43_05925 PF00994 Probable molybdopterin binding domain J4N43_05935 PF00268 Ribonucleotide reductase, small chain J4N43_05940 PF03477 ATP cone domain J4N43_05940 PF02867 Ribonucleotide reductase, barrel domain J4N43_05940 PF00317 Ribonucleotide reductase, all-alpha domain J4N43_05950 PF00521 DNA gyrase/topoisomerase IV, subunit A J4N43_05950 PF03989 DNA gyrase C-terminal domain, beta-propeller J4N43_05965 PF02335 Cytochrome c552 J4N43_05975 PF13247 4Fe-4S dicluster domain J4N43_05980 PF03916 Polysulphide reductase, NrfD J4N43_05985 PF01578 Cytochrome C assembly protein J4N43_05985 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal J4N43_05990 PF08534 Redoxin J4N43_05995 PF03918 Cytochrome C biogenesis protein J4N43_06005 PF00925 GTP cyclohydrolase II J4N43_06030 PF03734 L,D-transpeptidase catalytic domain J4N43_06030 PF01471 Putative peptidoglycan binding domain J4N43_06035 PF05951 Bacterial protein of unknown function (DUF882) J4N43_06040 PF00753 Metallo-beta-lactamase superfamily J4N43_06055 PF03480 Bacterial extracellular solute-binding protein, family 7 J4N43_06065 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J4N43_06070 PF07730 Histidine kinase J4N43_06070 PF17200 Single Cache domain 2 J4N43_06075 PF00196 Bacterial regulatory proteins, luxR family J4N43_06075 PF00072 Response regulator receiver domain J4N43_06085 PF02028 BCCT, betaine/carnitine/choline family transporter J4N43_06090 PF00672 HAMP domain J4N43_06090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N43_06110 PF00155 Aminotransferase class I and II J4N43_06125 PF00392 Bacterial regulatory proteins, gntR family J4N43_06125 PF00155 Aminotransferase class I and II J4N43_06135 PF00152 tRNA synthetases class II (D, K and N) J4N43_06135 PF01336 OB-fold nucleic acid binding domain J4N43_06140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N43_06140 PF17200 Single Cache domain 2 J4N43_06140 PF00672 HAMP domain J4N43_06145 PF01242 6-pyruvoyl tetrahydropterin synthase J4N43_06155 PF04940 Sensors of blue-light using FAD J4N43_06155 PF00563 EAL domain J4N43_06160 PF03313 Serine dehydratase alpha chain J4N43_06160 PF03315 Serine dehydratase beta chain J4N43_06165 PF03222 Tryptophan/tyrosine permease family J4N43_06170 PF00293 NUDIX domain J4N43_06180 PF00072 Response regulator receiver domain J4N43_06180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_06180 PF09308 LuxQ, periplasmic J4N43_06180 PF00512 His Kinase A (phospho-acceptor) domain J4N43_06185 PF00425 chorismate binding enzyme J4N43_06185 PF04715 Anthranilate synthase component I, N terminal region J4N43_06200 PF04317 YcjX-like family, DUF463 J4N43_06205 PF05128 Domain of unknown function (DUF697) J4N43_06210 PF00158 Sigma-54 interaction domain J4N43_06210 PF18024 Helix-turn-helix domain J4N43_06215 PF13302 Acetyltransferase (GNAT) domain J4N43_06230 PF13495 Phage integrase, N-terminal SAM-like domain J4N43_06230 PF00589 Phage integrase family J4N43_06255 PF14552 Tautomerase enzyme J4N43_06275 PF01337 Barstar (barnase inhibitor) J4N43_06325 PF05016 ParE toxin of type II toxin-antitoxin system, parDE J4N43_06470 PF00857 Isochorismatase family J4N43_06685 PF14602 Hexapeptide repeat of succinyl-transferase J4N43_06685 PF12464 Maltose acetyltransferase J4N43_06690 PF13302 Acetyltransferase (GNAT) domain J4N43_06695 PF02272 DHHA1 domain J4N43_06695 PF01411 tRNA synthetases class II (A) J4N43_06695 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J4N43_06715 PF07237 Protein of unknown function (DUF1428) J4N43_06720 PF01810 LysE type translocator J4N43_06725 PF01810 LysE type translocator J4N43_06730 PF11008 Protein of unknown function (DUF2846) J4N43_06735 PF17243 POTRA domain TamA domain 1 J4N43_06735 PF01103 Surface antigen J4N43_06740 PF13091 PLD-like domain J4N43_06745 PF00135 Carboxylesterase family J4N43_06760 PF13533 Biotin-lipoyl like J4N43_06770 PF06826 Predicted Permease Membrane Region J4N43_06770 PF02080 TrkA-C domain J4N43_06775 PF00155 Aminotransferase class I and II J4N43_06780 PF08543 Phosphomethylpyrimidine kinase J4N43_06795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_06795 PF03466 LysR substrate binding domain J4N43_06810 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N43_06825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_06825 PF00989 PAS fold J4N43_06825 PF17203 Single cache domain 3 J4N43_06825 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain J4N43_06830 PF12431 Transcriptional regulator J4N43_06830 PF00072 Response regulator receiver domain J4N43_06835 PF07715 TonB-dependent Receptor Plug Domain J4N43_06835 PF00593 TonB dependent receptor J4N43_06840 PF02311 AraC-like ligand binding domain J4N43_06840 PF12833 Helix-turn-helix domain J4N43_06845 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain J4N43_06845 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain J4N43_06850 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase J4N43_06855 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain J4N43_06855 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J4N43_06880 PF00158 Sigma-54 interaction domain J4N43_06880 PF02954 Bacterial regulatory protein, Fis family J4N43_06880 PF01590 GAF domain J4N43_06885 PF00171 Aldehyde dehydrogenase family J4N43_06905 PF12833 Helix-turn-helix domain J4N43_06920 PF00263 Bacterial type II and III secretion system protein J4N43_06920 PF03958 Bacterial type II/III secretion system short domain J4N43_06925 PF16697 Inner membrane component of T3SS, cytoplasmic domain J4N43_06925 PF16693 Inner membrane component of T3SS, periplasmic domain J4N43_06935 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF J4N43_06940 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) J4N43_06950 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI J4N43_06955 PF01514 Secretory protein of YscJ/FliF family J4N43_06965 PF02108 Flagellar assembly protein FliH J4N43_06975 PF02661 Fic/DOC family J4N43_07005 PF12852 Cupin J4N43_07005 PF12833 Helix-turn-helix domain J4N43_07010 PF01312 FlhB HrpN YscU SpaS Family J4N43_07015 PF01311 Bacterial export proteins, family 1 J4N43_07020 PF01313 Bacterial export proteins, family 3 J4N43_07025 PF00813 FliP family J4N43_07030 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J4N43_07045 PF02874 ATP synthase alpha/beta family, beta-barrel domain J4N43_07045 PF18269 T3SS EscN ATPase C-terminal domain J4N43_07045 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N43_07055 PF09059 TyeA J4N43_07075 PF00771 FHIPEP family J4N43_07080 PF09621 Type III secretion system regulator (LcrR) J4N43_07090 PF04792 V antigen (LcrV) protein J4N43_07095 PF07720 Tetratricopeptide repeat J4N43_07105 PF05844 YopD protein J4N43_07110 PF16868 NMT1-like family J4N43_07115 PF01925 Sulfite exporter TauE/SafE J4N43_07125 PF01970 Tripartite tricarboxylate transporter TctA family J4N43_07155 PF00285 Citrate synthase, C-terminal domain J4N43_07160 PF00330 Aconitase family (aconitate hydratase) J4N43_07160 PF00694 Aconitase C-terminal domain J4N43_07165 PF04303 PrpF protein J4N43_07170 PF13193 AMP-binding enzyme C-terminal domain J4N43_07170 PF16177 Acetyl-coenzyme A synthetase N-terminus J4N43_07170 PF00501 AMP-binding enzyme J4N43_07180 PF00089 Trypsin J4N43_07195 PF04055 Radical SAM superfamily J4N43_07200 PF06508 Queuosine biosynthesis protein QueC J4N43_07210 PF01810 LysE type translocator J4N43_07215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_07215 PF03466 LysR substrate binding domain J4N43_07220 PF03466 LysR substrate binding domain J4N43_07220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_07225 PF00873 AcrB/AcrD/AcrF family J4N43_07235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_07235 PF03466 LysR substrate binding domain J4N43_07240 PF00267 Gram-negative porin J4N43_07250 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N43_07255 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_07260 PF00005 ABC transporter J4N43_07265 PF00809 Pterin binding enzyme J4N43_07265 PF02310 B12 binding domain J4N43_07265 PF02574 Homocysteine S-methyltransferase J4N43_07265 PF02607 B12 binding domain J4N43_07265 PF02965 Vitamin B12 dependent methionine synthase, activation domain J4N43_07270 PF08240 Alcohol dehydrogenase GroES-like domain J4N43_07270 PF00107 Zinc-binding dehydrogenase J4N43_07280 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N43_07285 PF00857 Isochorismatase family J4N43_07290 PF12833 Helix-turn-helix domain J4N43_07290 PF02311 AraC-like ligand binding domain J4N43_07295 PF08240 Alcohol dehydrogenase GroES-like domain J4N43_07295 PF00107 Zinc-binding dehydrogenase J4N43_07305 PF07690 Major Facilitator Superfamily J4N43_07310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_07310 PF03466 LysR substrate binding domain J4N43_07320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_07320 PF03466 LysR substrate binding domain J4N43_07325 PF00248 Aldo/keto reductase family J4N43_07335 PF09339 IclR helix-turn-helix domain J4N43_07335 PF01614 Bacterial transcriptional regulator J4N43_07340 PF13185 GAF domain J4N43_07340 PF00990 Diguanylate cyclase, GGDEF domain J4N43_07350 PF05736 OprF membrane domain J4N43_07350 PF00691 OmpA family J4N43_07365 PF00691 OmpA family J4N43_07380 PF17785 PUA-like domain J4N43_07380 PF10672 S-adenosylmethionine-dependent methyltransferase J4N43_07385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N43_07385 PF00672 HAMP domain J4N43_07385 PF02743 Cache domain J4N43_07390 PF00708 Acylphosphatase J4N43_07395 PF04358 DsrC like protein J4N43_07405 PF01027 Inhibitor of apoptosis-promoting Bax1 J4N43_07410 PF00005 ABC transporter J4N43_07415 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_07420 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_07425 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N43_07430 PF10414 Sirohaem synthase dimerisation region J4N43_07430 PF14824 Sirohaem biosynthesis protein central J4N43_07430 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N43_07435 PF04461 Protein of unknown function (DUF520) J4N43_07440 PF00793 DAHP synthetase I family J4N43_07460 PF01189 16S rRNA methyltransferase RsmB/F J4N43_07460 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF J4N43_07460 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF J4N43_07465 PF02470 MlaD protein J4N43_07470 PF04403 Paraquat-inducible protein A J4N43_07475 PF00664 ABC transporter transmembrane region J4N43_07475 PF00005 ABC transporter J4N43_07480 PF13185 GAF domain J4N43_07485 PF04352 ProQ/FINO family J4N43_07485 PF17516 ProQ C-terminal domain J4N43_07490 PF11818 C-terminal domain of tail specific protease (DUF3340) J4N43_07490 PF00595 PDZ domain J4N43_07490 PF03572 Peptidase family S41 J4N43_07490 PF17804 Tail specific protease N-terminal domain J4N43_07500 PF11940 Domain of unknown function (DUF3458) Ig-like fold J4N43_07500 PF17432 Domain of unknown function (DUF3458_C) ARM repeats J4N43_07500 PF01433 Peptidase family M1 domain J4N43_07510 PF05088 Bacterial NAD-glutamate dehydrogenase J4N43_07515 PF01180 Dihydroorotate dehydrogenase J4N43_07520 PF07126 Cell-division protein ZapC J4N43_07525 PF10672 S-adenosylmethionine-dependent methyltransferase J4N43_07525 PF02926 THUMP domain J4N43_07525 PF01170 Putative RNA methylase family UPF0020 J4N43_07535 PF16326 ABC transporter C-terminal domain J4N43_07535 PF00005 ABC transporter J4N43_07535 PF12848 ABC transporter J4N43_07545 PF04957 Ribosome modulation factor J4N43_07550 PF07977 FabA-like domain J4N43_07555 PF13654 AAA domain J4N43_07555 PF05362 Lon protease (S16) C-terminal proteolytic domain J4N43_07560 PF17414 MatP C-terminal ribbon-helix-helix domain J4N43_07560 PF06303 MatP N-terminal domain J4N43_07590 PF09308 LuxQ, periplasmic J4N43_07590 PF00072 Response regulator receiver domain J4N43_07590 PF00512 His Kinase A (phospho-acceptor) domain J4N43_07590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_07605 PF00115 Cytochrome C and Quinol oxidase polypeptide I J4N43_07620 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP J4N43_07620 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J4N43_07630 PF00403 Heavy-metal-associated domain J4N43_07645 PF13545 Crp-like helix-turn-helix domain J4N43_07645 PF00027 Cyclic nucleotide-binding domain J4N43_07650 PF00582 Universal stress protein family J4N43_07655 PF01171 PP-loop family J4N43_07675 PF08402 TOBE domain J4N43_07675 PF00005 ABC transporter J4N43_07680 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_07685 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_07690 PF13416 Bacterial extracellular solute-binding protein J4N43_07695 PF13416 Bacterial extracellular solute-binding protein J4N43_07700 PF02146 Sir2 family J4N43_07710 PF00909 Ammonium Transporter Family J4N43_07795 PF03527 RHS protein J4N43_07795 PF05593 RHS Repeat J4N43_07810 PF13247 4Fe-4S dicluster domain J4N43_07815 PF00384 Molybdopterin oxidoreductase J4N43_07815 PF01568 Molydopterin dinucleotide binding domain J4N43_07815 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J4N43_07825 PF02613 Nitrate reductase delta subunit J4N43_07845 PF02634 FdhD/NarQ family J4N43_07850 PF00005 ABC transporter J4N43_07850 PF12848 ABC transporter J4N43_07855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_07855 PF00512 His Kinase A (phospho-acceptor) domain J4N43_07860 PF02954 Bacterial regulatory protein, Fis family J4N43_07860 PF00072 Response regulator receiver domain J4N43_07860 PF00158 Sigma-54 interaction domain J4N43_07865 PF12849 PBP superfamily domain J4N43_07870 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_07875 PF08402 TOBE domain J4N43_07875 PF00005 ABC transporter J4N43_07880 PF12804 MobA-like NTP transferase domain J4N43_07885 PF00994 Probable molybdopterin binding domain J4N43_07885 PF03454 MoeA C-terminal region (domain IV) J4N43_07885 PF03453 MoeA N-terminal region (domain I and II) J4N43_07895 PF00480 ROK family J4N43_07900 PF03942 DTW domain J4N43_07930 PF00877 NlpC/P60 family J4N43_07940 PF05230 MASE2 domain J4N43_07940 PF00990 Diguanylate cyclase, GGDEF domain J4N43_07945 PF01339 CheB methylesterase J4N43_07945 PF00072 Response regulator receiver domain J4N43_07950 PF03881 Fructosamine kinase J4N43_07960 PF00677 Lumazine binding domain J4N43_07965 PF01554 MatE J4N43_07975 PF01068 ATP dependent DNA ligase domain J4N43_07975 PF14743 DNA ligase OB-like domain J4N43_07980 PF01740 STAS domain J4N43_07990 PF02563 Polysaccharide biosynthesis/export protein J4N43_07990 PF10531 SLBB domain J4N43_08005 PF02954 Bacterial regulatory protein, Fis family J4N43_08005 PF00072 Response regulator receiver domain J4N43_08005 PF00158 Sigma-54 interaction domain J4N43_08010 PF13439 Glycosyltransferase Family 4 J4N43_08010 PF00534 Glycosyl transferases group 1 J4N43_08015 PF00534 Glycosyl transferases group 1 J4N43_08015 PF13439 Glycosyltransferase Family 4 J4N43_08045 PF13439 Glycosyltransferase Family 4 J4N43_08045 PF00534 Glycosyl transferases group 1 J4N43_08055 PF02397 Bacterial sugar transferase J4N43_08065 PF02028 BCCT, betaine/carnitine/choline family transporter J4N43_08080 PF00270 DEAD/DEAH box helicase J4N43_08080 PF11898 Domain of unknown function (DUF3418) J4N43_08080 PF04408 Helicase associated domain (HA2) J4N43_08080 PF00271 Helicase conserved C-terminal domain J4N43_08080 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold J4N43_08085 PF02525 Flavodoxin-like fold J4N43_08120 PF00990 Diguanylate cyclase, GGDEF domain J4N43_08135 PF00012 Hsp70 protein J4N43_08150 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J4N43_08150 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J4N43_08155 PF03992 Antibiotic biosynthesis monooxygenase J4N43_08160 PF03466 LysR substrate binding domain J4N43_08160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_08170 PF07963 Prokaryotic N-terminal methylation motif J4N43_08170 PF08334 Type II secretion system (T2SS), protein G J4N43_08175 PF00664 ABC transporter transmembrane region J4N43_08175 PF00005 ABC transporter J4N43_08180 PF00664 ABC transporter transmembrane region J4N43_08180 PF00005 ABC transporter J4N43_08190 PF07715 TonB-dependent Receptor Plug Domain J4N43_08190 PF00593 TonB dependent receptor J4N43_08195 PF01032 FecCD transport family J4N43_08200 PF01497 Periplasmic binding protein J4N43_08205 PF00005 ABC transporter J4N43_08215 PF11871 Domain of unknown function (DUF3391) J4N43_08215 PF01966 HD domain J4N43_08220 PF03222 Tryptophan/tyrosine permease family J4N43_08225 PF00465 Iron-containing alcohol dehydrogenase J4N43_08230 PF01966 HD domain J4N43_08240 PF03741 Integral membrane protein TerC family J4N43_08250 PF04055 Radical SAM superfamily J4N43_08255 PF11230 Protein of unknown function (DUF3029) J4N43_08260 PF01810 LysE type translocator J4N43_08265 PF01966 HD domain J4N43_08265 PF11871 Domain of unknown function (DUF3391) J4N43_08270 PF00563 EAL domain J4N43_08270 PF00990 Diguanylate cyclase, GGDEF domain J4N43_08270 PF03707 Bacterial signalling protein N terminal repeat J4N43_08275 PF02954 Bacterial regulatory protein, Fis family J4N43_08275 PF00072 Response regulator receiver domain J4N43_08275 PF00158 Sigma-54 interaction domain J4N43_08280 PF00512 His Kinase A (phospho-acceptor) domain J4N43_08280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_08285 PF00939 Sodium:sulfate symporter transmembrane region J4N43_08305 PF00990 Diguanylate cyclase, GGDEF domain J4N43_08305 PF00072 Response regulator receiver domain J4N43_08310 PF03928 Haem-degrading J4N43_08315 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J4N43_08315 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J4N43_08320 PF00455 DeoR C terminal sensor domain J4N43_08320 PF08220 DeoR-like helix-turn-helix domain J4N43_08335 PF02321 Outer membrane efflux protein J4N43_08345 PF00005 ABC transporter J4N43_08345 PF00664 ABC transporter transmembrane region J4N43_08345 PF03412 Peptidase C39 family J4N43_08355 PF00884 Sulfatase J4N43_08360 PF00884 Sulfatase J4N43_08375 PF13186 Iron-sulfur cluster-binding domain J4N43_08375 PF04055 Radical SAM superfamily J4N43_08380 PF03781 Sulfatase-modifying factor enzyme 1 J4N43_08390 PF00884 Sulfatase J4N43_08395 PF00696 Amino acid kinase family J4N43_08395 PF13840 ACT domain J4N43_08400 PF06339 Ectoine synthase J4N43_08405 PF00202 Aminotransferase class-III J4N43_08410 PF00583 Acetyltransferase (GNAT) family J4N43_08415 PF02028 BCCT, betaine/carnitine/choline family transporter J4N43_08430 PF00005 ABC transporter J4N43_08430 PF00571 CBS domain J4N43_08435 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_08440 PF04069 Substrate binding domain of ABC-type glycine betaine transport system J4N43_08445 PF00884 Sulfatase J4N43_08470 PF01235 Sodium:alanine symporter family J4N43_08480 PF01810 LysE type translocator J4N43_08485 PF02074 Carboxypeptidase Taq (M32) metallopeptidase J4N43_08490 PF03279 Bacterial lipid A biosynthesis acyltransferase J4N43_08495 PF00893 Small Multidrug Resistance protein J4N43_08505 PF04204 Homoserine O-succinyltransferase J4N43_08520 PF00990 Diguanylate cyclase, GGDEF domain J4N43_08520 PF00563 EAL domain J4N43_08520 PF03707 Bacterial signalling protein N terminal repeat J4N43_08525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_08525 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J4N43_08525 PF00672 HAMP domain J4N43_08525 PF01627 Hpt domain J4N43_08525 PF00072 Response regulator receiver domain J4N43_08525 PF00512 His Kinase A (phospho-acceptor) domain J4N43_08550 PF04237 YjbR J4N43_08555 PF01047 MarR family J4N43_08565 PF12792 CSS motif domain associated with EAL J4N43_08565 PF00563 EAL domain J4N43_08570 PF00202 Aminotransferase class-III J4N43_08575 PF00171 Aldehyde dehydrogenase family J4N43_08580 PF04371 Porphyromonas-type peptidyl-arginine deiminase J4N43_08585 PF00795 Carbon-nitrogen hydrolase J4N43_08590 PF01266 FAD dependent oxidoreductase J4N43_08595 PF00171 Aldehyde dehydrogenase family J4N43_08600 PF01381 Helix-turn-helix J4N43_08600 PF07883 Cupin domain J4N43_08605 PF07722 Peptidase C26 J4N43_08610 PF00120 Glutamine synthetase, catalytic domain J4N43_08615 PF03553 Na+/H+ antiporter family J4N43_08630 PF02694 Uncharacterised BCR, YnfA/UPF0060 family J4N43_08655 PF07007 Lysozyme inhibitor LprI J4N43_08705 PF14497 Glutathione S-transferase, C-terminal domain J4N43_08705 PF02798 Glutathione S-transferase, N-terminal domain J4N43_08715 PF04209 homogentisate 1,2-dioxygenase J4N43_08720 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N43_08725 PF07687 Peptidase dimerisation domain J4N43_08725 PF01546 Peptidase family M20/M25/M40 J4N43_08730 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N43_08735 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_08740 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_08740 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N43_08745 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N43_08745 PF00005 ABC transporter J4N43_08750 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N43_08750 PF00005 ABC transporter J4N43_08760 PF01752 Collagenase J4N43_08760 PF08453 Peptidase family M9 N-terminal J4N43_08770 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_08775 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_08780 PF08402 TOBE domain J4N43_08780 PF00005 ABC transporter J4N43_08785 PF00701 Dihydrodipicolinate synthetase family J4N43_08790 PF02423 Ornithine cyclodeaminase/mu-crystallin family J4N43_08800 PF05430 S-adenosyl-L-methionine-dependent methyltransferase J4N43_08800 PF01266 FAD dependent oxidoreductase J4N43_08805 PF05544 Proline racemase J4N43_08810 PF00171 Aldehyde dehydrogenase family J4N43_08815 PF00392 Bacterial regulatory proteins, gntR family J4N43_08835 PF05971 RNA methyltransferase J4N43_08840 PF01863 Protein of unknown function DUF45 J4N43_08850 PF03466 LysR substrate binding domain J4N43_08850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_08870 PF00005 ABC transporter J4N43_08875 PF01032 FecCD transport family J4N43_08880 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family J4N43_08895 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase J4N43_08900 PF02654 Cobalamin-5-phosphate synthase J4N43_08905 PF02277 Phosphoribosyltransferase J4N43_08910 PF13460 NAD(P)H-binding J4N43_08915 PF00375 Sodium:dicarboxylate symporter family J4N43_08920 PF08411 Exonuclease C-terminal J4N43_08920 PF00929 Exonuclease J4N43_08925 PF03788 LrgA family J4N43_08930 PF04172 LrgB-like family J4N43_08935 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J4N43_08935 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region J4N43_08940 PF02222 ATP-grasp domain J4N43_08945 PF05724 Thiopurine S-methyltransferase (TPMT) J4N43_08955 PF00216 Bacterial DNA-binding protein J4N43_08965 PF01588 Putative tRNA binding domain J4N43_08965 PF03147 Ferredoxin-fold anticodon binding domain J4N43_08965 PF03484 tRNA synthetase B5 domain J4N43_08965 PF03483 B3/4 domain J4N43_08965 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain J4N43_08970 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain J4N43_08970 PF01409 tRNA synthetases class II core domain (F) J4N43_09005 PF01906 Putative heavy-metal-binding J4N43_09010 PF00453 Ribosomal protein L20 J4N43_09015 PF01632 Ribosomal protein L35 J4N43_09020 PF05198 Translation initiation factor IF-3, N-terminal domain J4N43_09020 PF00707 Translation initiation factor IF-3, C-terminal domain J4N43_09025 PF02824 TGS domain J4N43_09025 PF03129 Anticodon binding domain J4N43_09025 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J4N43_09025 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J4N43_09040 PF00392 Bacterial regulatory proteins, gntR family J4N43_09040 PF07702 UTRA domain J4N43_09045 PF01979 Amidohydrolase family J4N43_09050 PF00491 Arginase family J4N43_09055 PF17392 Urocanase C-terminal domain J4N43_09055 PF01175 Urocanase Rossmann-like domain J4N43_09055 PF17391 Urocanase N-terminal domain J4N43_09060 PF00221 Aromatic amino acid lyase J4N43_09070 PF04191 Phospholipid methyltransferase J4N43_09075 PF01565 FAD binding domain J4N43_09075 PF13183 4Fe-4S dicluster domain J4N43_09075 PF02913 FAD linked oxidases, C-terminal domain J4N43_09090 PF00691 OmpA family J4N43_09090 PF05736 OprF membrane domain J4N43_09180 PF01259 SAICAR synthetase J4N43_09185 PF09423 PhoD-like phosphatase J4N43_09185 PF16655 PhoD-like phosphatase, N-terminal domain J4N43_09195 PF04408 Helicase associated domain (HA2) J4N43_09195 PF00270 DEAD/DEAH box helicase J4N43_09195 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold J4N43_09195 PF00271 Helicase conserved C-terminal domain J4N43_09195 PF11898 Domain of unknown function (DUF3418) J4N43_09200 PF00390 Malic enzyme, N-terminal domain J4N43_09200 PF03949 Malic enzyme, NAD binding domain J4N43_09205 PF02698 DUF218 domain J4N43_09210 PF00939 Sodium:sulfate symporter transmembrane region J4N43_09215 PF00072 Response regulator receiver domain J4N43_09215 PF00990 Diguanylate cyclase, GGDEF domain J4N43_09225 PF00266 Aminotransferase class-V J4N43_09235 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N43_09240 PF00664 ABC transporter transmembrane region J4N43_09240 PF00005 ABC transporter J4N43_09245 PF00664 ABC transporter transmembrane region J4N43_09245 PF00005 ABC transporter J4N43_09250 PF00291 Pyridoxal-phosphate dependent enzyme J4N43_09255 PF00266 Aminotransferase class-V J4N43_09265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_09265 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N43_09265 PF00512 His Kinase A (phospho-acceptor) domain J4N43_09280 PF04993 TfoX N-terminal domain J4N43_09280 PF04994 TfoX C-terminal domain J4N43_09290 PF03956 Lysine exporter LysO J4N43_09300 PF00282 Pyridoxal-dependent decarboxylase conserved domain J4N43_09305 PF01418 Helix-turn-helix domain, rpiR family J4N43_09305 PF01380 SIS domain J4N43_09310 PF00465 Iron-containing alcohol dehydrogenase J4N43_09315 PF00462 Glutaredoxin J4N43_09320 PF06826 Predicted Permease Membrane Region J4N43_09320 PF02080 TrkA-C domain J4N43_09325 PF07055 Enoyl reductase FAD binding domain J4N43_09325 PF12241 Trans-2-enoyl-CoA reductase catalytic region J4N43_09325 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase J4N43_09330 PF02770 Acyl-CoA dehydrogenase, middle domain J4N43_09330 PF09317 Domain of unknown function (DUF1974) J4N43_09330 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J4N43_09330 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J4N43_09335 PF16295 Tetracyclin repressor-like, C-terminal domain J4N43_09335 PF00440 Bacterial regulatory proteins, tetR family J4N43_09340 PF06965 Na+/H+ antiporter 1 J4N43_09355 PF00005 ABC transporter J4N43_09360 PF01554 MatE J4N43_09365 PF11066 Protein of unknown function (DUF2867) J4N43_09365 PF13460 NAD(P)H-binding J4N43_09375 PF07690 Major Facilitator Superfamily J4N43_09380 PF01479 S4 domain J4N43_09380 PF00849 RNA pseudouridylate synthase J4N43_09385 PF00271 Helicase conserved C-terminal domain J4N43_09385 PF04851 Type III restriction enzyme, res subunit J4N43_09395 PF00072 Response regulator receiver domain J4N43_09395 PF00486 Transcriptional regulatory protein, C terminal J4N43_09400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_09405 PF01386 Ribosomal L25p family J4N43_09415 PF00149 Calcineurin-like phosphoesterase J4N43_09415 PF02872 5'-nucleotidase, C-terminal domain J4N43_09425 PF06945 Protein of unknown function (DUF1289) J4N43_09435 PF13416 Bacterial extracellular solute-binding protein J4N43_09440 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_09445 PF00005 ABC transporter J4N43_09450 PF01066 CDP-alcohol phosphatidyltransferase J4N43_09460 PF01590 GAF domain J4N43_09460 PF00158 Sigma-54 interaction domain J4N43_09465 PF03063 Prismane/CO dehydrogenase family J4N43_09470 PF00970 Oxidoreductase FAD-binding domain J4N43_09470 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N43_09470 PF00175 Oxidoreductase NAD-binding domain J4N43_09480 PF00849 RNA pseudouridylate synthase J4N43_09485 PF00209 Sodium:neurotransmitter symporter family J4N43_09490 PF13396 Phospholipase_D-nuclease N-terminal J4N43_09490 PF13091 PLD-like domain J4N43_09495 PF01053 Cys/Met metabolism PLP-dependent enzyme J4N43_09500 PF00561 alpha/beta hydrolase fold J4N43_09505 PF03280 Proteobacterial lipase chaperone protein J4N43_09510 PF03352 Methyladenine glycosylase J4N43_09515 PF00873 AcrB/AcrD/AcrF family J4N43_09520 PF13533 Biotin-lipoyl like J4N43_09530 PF04024 PspC domain J4N43_09535 PF06667 Phage shock protein B J4N43_09540 PF04012 PspA/IM30 family J4N43_09545 PF00158 Sigma-54 interaction domain J4N43_09545 PF02954 Bacterial regulatory protein, Fis family J4N43_09550 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N43_09555 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_09560 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N43_09560 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_09565 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N43_09565 PF00005 ABC transporter J4N43_09570 PF00005 ABC transporter J4N43_09580 PF02833 DHHA2 domain J4N43_09580 PF01368 DHH family J4N43_09590 PF16874 Glycosyl hydrolase family 36 C-terminal domain J4N43_09590 PF16875 Glycosyl hydrolase family 36 N-terminal domain J4N43_09595 PF18364 Molybdopterin oxidoreductase N-terminal domain J4N43_09595 PF01568 Molydopterin dinucleotide binding domain J4N43_09595 PF00384 Molybdopterin oxidoreductase J4N43_09600 PF03264 NapC/NirT cytochrome c family, N-terminal region J4N43_09605 PF06796 Periplasmic nitrate reductase protein NapE J4N43_09610 PF03649 Uncharacterised protein family (UPF0014) J4N43_09620 PF01226 Formate/nitrite transporter J4N43_09645 PF02698 DUF218 domain J4N43_09650 PF00265 Thymidine kinase J4N43_09655 PF01406 tRNA synthetases class I (C) catalytic domain J4N43_09655 PF09190 DALR domain J4N43_09660 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J4N43_09665 PF00149 Calcineurin-like phosphoesterase J4N43_09670 PF08668 HDOD domain J4N43_09670 PF00563 EAL domain J4N43_09675 PF02810 SEC-C motif J4N43_09680 PF01502 Phosphoribosyl-AMP cyclohydrolase J4N43_09680 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase J4N43_09685 PF00977 Histidine biosynthesis protein J4N43_09690 PF00977 Histidine biosynthesis protein J4N43_09695 PF00117 Glutamine amidotransferase class-I J4N43_09700 PF00475 Imidazoleglycerol-phosphate dehydratase J4N43_09700 PF08645 Polynucleotide kinase 3 phosphatase J4N43_09705 PF00155 Aminotransferase class I and II J4N43_09710 PF00815 Histidinol dehydrogenase J4N43_09715 PF01634 ATP phosphoribosyltransferase J4N43_09715 PF08029 HisG, C-terminal domain J4N43_09720 PF03553 Na+/H+ antiporter family J4N43_09725 PF00816 H-NS histone family J4N43_09730 PF00294 pfkB family carbohydrate kinase J4N43_09745 PF04356 Protein of unknown function (DUF489) J4N43_09750 PF08328 Adenylosuccinate lyase C-terminal J4N43_09750 PF00206 Lyase J4N43_09760 PF16036 Chalcone isomerase-like J4N43_09785 PF00106 short chain dehydrogenase J4N43_09795 PF01435 Peptidase family M48 J4N43_09810 PF08241 Methyltransferase domain J4N43_09815 PF00155 Aminotransferase class I and II J4N43_09820 PF06968 Biotin and Thiamin Synthesis associated domain J4N43_09820 PF04055 Radical SAM superfamily J4N43_09825 PF00202 Aminotransferase class-III J4N43_09830 PF01258 Prokaryotic dksA/traR C4-type zinc finger J4N43_09845 PF02403 Seryl-tRNA synthetase N-terminal domain J4N43_09845 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J4N43_09850 PF00004 ATPase family associated with various cellular activities (AAA) J4N43_09850 PF16193 AAA C-terminal domain J4N43_09850 PF12002 MgsA AAA+ ATPase C terminal J4N43_09855 PF03548 Outer membrane lipoprotein carrier protein LolA J4N43_09860 PF01580 FtsK/SpoIIIE family J4N43_09860 PF09397 Ftsk gamma domain J4N43_09860 PF17854 FtsK alpha domain J4N43_09860 PF13491 4TM region of DNA translocase FtsK/SpoIIIE J4N43_09865 PF01037 Lrp/AsnC ligand binding domain J4N43_09870 PF01262 Alanine dehydrogenase/PNT, C-terminal domain J4N43_09870 PF05222 Alanine dehydrogenase/PNT, N-terminal domain J4N43_09880 PF03466 LysR substrate binding domain J4N43_09880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_09890 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) J4N43_09895 PF00672 HAMP domain J4N43_09895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N43_09905 PF03372 Endonuclease/Exonuclease/phosphatase family J4N43_09915 PF00579 tRNA synthetases class I (W and Y) J4N43_09930 PF00873 AcrB/AcrD/AcrF family J4N43_09935 PF00529 HlyD membrane-fusion protein of T1SS J4N43_09935 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N43_09940 PF17200 Single Cache domain 2 J4N43_09940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N43_09940 PF00672 HAMP domain J4N43_09955 PF01654 Cytochrome bd terminal oxidase subunit I J4N43_09960 PF02322 Cytochrome bd terminal oxidase subunit II J4N43_10055 PF13007 Transposase C of IS166 homeodomain J4N43_10055 PF13005 zinc-finger binding domain of transposase IS66 J4N43_10055 PF03050 Transposase IS66 family J4N43_10055 PF13817 IS66 C-terminal element J4N43_10090 PF12102 Domain of unknown function (DUF3578) J4N43_10090 PF07728 AAA domain (dynein-related subfamily) J4N43_10115 PF01420 Type I restriction modification DNA specificity domain J4N43_10120 PF02384 N-6 DNA Methylase J4N43_10125 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) J4N43_10125 PF04851 Type III restriction enzyme, res subunit J4N43_10125 PF00271 Helicase conserved C-terminal domain J4N43_10125 PF08463 EcoEI R protein C-terminal J4N43_10190 PF13356 Arm DNA-binding domain J4N43_10190 PF00589 Phage integrase family J4N43_10200 PF06610 L-alanine exporter J4N43_10205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_10205 PF00512 His Kinase A (phospho-acceptor) domain J4N43_10205 PF09308 LuxQ, periplasmic J4N43_10205 PF00072 Response regulator receiver domain J4N43_10215 PF03738 Glutathionylspermidine synthase preATP-grasp J4N43_10225 PF03994 Domain of Unknown Function (DUF350) J4N43_10235 PF02445 Quinolinate synthetase A protein J4N43_10240 PF16331 TolA binding protein trimerisation J4N43_10240 PF13174 Tetratricopeptide repeat J4N43_10245 PF00691 OmpA family J4N43_10250 PF07676 WD40-like Beta Propeller Repeat J4N43_10250 PF04052 TolB amino-terminal domain J4N43_10260 PF02472 Biopolymer transport protein ExbD/TolR J4N43_10265 PF01618 MotA/TolQ/ExbB proton channel family J4N43_10270 PF03061 Thioesterase superfamily J4N43_10280 PF08173 Membrane bound YbgT-like protein J4N43_10285 PF02322 Cytochrome bd terminal oxidase subunit II J4N43_10290 PF01654 Cytochrome bd terminal oxidase subunit I J4N43_10295 PF05496 Holliday junction DNA helicase RuvB P-loop domain J4N43_10295 PF05491 RuvB C-terminal winged helix domain J4N43_10295 PF17864 RuvB AAA lid domain J4N43_10300 PF01330 RuvA N terminal domain J4N43_10300 PF07499 RuvA, C-terminal domain J4N43_10305 PF02075 Crossover junction endodeoxyribonuclease RuvC J4N43_10310 PF01709 Transcriptional regulator J4N43_10315 PF01336 OB-fold nucleic acid binding domain J4N43_10315 PF02938 GAD domain J4N43_10315 PF00152 tRNA synthetases class II (D, K and N) J4N43_10320 PF01904 Protein of unknown function DUF72 J4N43_10325 PF13649 Methyltransferase domain J4N43_10330 PF08003 Protein of unknown function (DUF1698) J4N43_10335 PF08443 RimK-like ATP-grasp domain J4N43_10335 PF18030 RimK PreATP-grasp domain J4N43_10355 PF16330 MukB hinge domain J4N43_10355 PF04310 MukB N-terminal J4N43_10360 PF04288 MukE-like family J4N43_10365 PF17193 MukF C-terminal domain J4N43_10365 PF17192 MukF middle domain J4N43_10365 PF03882 MukF winged-helix domain J4N43_10370 PF13847 Methyltransferase domain J4N43_10375 PF02698 DUF218 domain J4N43_10380 PF00072 Response regulator receiver domain J4N43_10380 PF00486 Transcriptional regulatory protein, C terminal J4N43_10385 PF02613 Nitrate reductase delta subunit J4N43_10390 PF00356 Bacterial regulatory proteins, lacI family J4N43_10395 PF04993 TfoX N-terminal domain J4N43_10395 PF04994 TfoX C-terminal domain J4N43_10415 PF00534 Glycosyl transferases group 1 J4N43_10415 PF08323 Starch synthase catalytic domain J4N43_10420 PF00483 Nucleotidyl transferase J4N43_10425 PF08272 Topoisomerase I zinc-ribbon-like J4N43_10425 PF01751 Toprim domain J4N43_10425 PF01396 Topoisomerase DNA binding C4 zinc finger J4N43_10425 PF01131 DNA topoisomerase J4N43_10430 PF10692 Protein of unknown function (DUF2498) J4N43_10435 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J4N43_10445 PF03588 Leucyl/phenylalanyl-tRNA protein transferase J4N43_10450 PF04376 Arginine-tRNA-protein transferase, N terminus J4N43_10450 PF04377 Arginine-tRNA-protein transferase, C terminus J4N43_10455 PF01176 Translation initiation factor 1A / IF-1 J4N43_10460 PF17871 AAA lid domain J4N43_10460 PF02861 Clp amino terminal domain, pathogenicity island component J4N43_10460 PF00004 ATPase family associated with various cellular activities (AAA) J4N43_10460 PF07724 AAA domain (Cdc48 subfamily) J4N43_10460 PF10431 C-terminal, D2-small domain, of ClpB protein J4N43_10465 PF02617 ATP-dependent Clp protease adaptor protein ClpS J4N43_10470 PF00313 'Cold-shock' DNA-binding domain J4N43_10475 PF03971 Monomeric isocitrate dehydrogenase J4N43_10480 PF00849 RNA pseudouridylate synthase J4N43_10485 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) J4N43_10495 PF06733 DEAD_2 J4N43_10495 PF13307 Helicase C-terminal domain J4N43_10500 PF01925 Sulfite exporter TauE/SafE J4N43_10505 PF07445 Primosomal replication protein priC J4N43_10510 PF10689 Protein of unknown function (DUF2496) J4N43_10515 PF03372 Endonuclease/Exonuclease/phosphatase family J4N43_10525 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_10530 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_10535 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N43_10540 PF00005 ABC transporter J4N43_10555 PF01228 Glycine radical J4N43_10555 PF02901 Pyruvate formate lyase-like J4N43_10565 PF04055 Radical SAM superfamily J4N43_10575 PF03887 YfbU domain J4N43_10580 PF08298 PrkA AAA domain J4N43_10580 PF06798 PrkA serine protein kinase C-terminal domain J4N43_10585 PF04285 Protein of unknown function (DUF444) J4N43_10590 PF04293 SpoVR like protein J4N43_10595 PF02348 Cytidylyltransferase J4N43_10600 PF03966 Trm112p-like protein J4N43_10605 PF02606 Tetraacyldisaccharide-1-P 4'-kinase J4N43_10610 PF00005 ABC transporter J4N43_10610 PF00664 ABC transporter transmembrane region J4N43_10615 PF03772 Competence protein J4N43_10615 PF00753 Metallo-beta-lactamase superfamily J4N43_10615 PF13567 Domain of unknown function (DUF4131) J4N43_10625 PF02687 FtsX-like permease family J4N43_10625 PF12704 MacB-like periplasmic core domain J4N43_10630 PF00005 ABC transporter J4N43_10635 PF12704 MacB-like periplasmic core domain J4N43_10635 PF02687 FtsX-like permease family J4N43_10645 PF02559 CarD-like/TRCF domain J4N43_10645 PF00270 DEAD/DEAH box helicase J4N43_10645 PF00271 Helicase conserved C-terminal domain J4N43_10645 PF03461 TRCF domain J4N43_10645 PF17757 UvrB interaction domain J4N43_10660 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N43_10665 PF05728 Uncharacterised protein family (UPF0227) J4N43_10670 PF01636 Phosphotransferase enzyme family J4N43_10675 PF13036 Peptidoglycan-synthase activator LpoB J4N43_10675 PF08139 Prokaryotic membrane lipoprotein lipid attachment site J4N43_10690 PF01230 HIT domain J4N43_10695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N43_10695 PF00672 HAMP domain J4N43_10705 PF01048 Phosphorylase superfamily J4N43_10710 PF00403 Heavy-metal-associated domain J4N43_10715 PF00478 IMP dehydrogenase / GMP reductase domain J4N43_10715 PF00571 CBS domain J4N43_10720 PF00588 SpoU rRNA Methylase family J4N43_10720 PF08032 RNA 2'-O ribose methyltransferase substrate binding J4N43_10765 PF13676 TIR domain J4N43_10785 PF01420 Type I restriction modification DNA specificity domain J4N43_10790 PF12161 HsdM N-terminal domain J4N43_10790 PF02384 N-6 DNA Methylase J4N43_10795 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) J4N43_10795 PF04851 Type III restriction enzyme, res subunit J4N43_10795 PF08463 EcoEI R protein C-terminal J4N43_10795 PF00271 Helicase conserved C-terminal domain J4N43_10835 PF00990 Diguanylate cyclase, GGDEF domain J4N43_10845 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J4N43_10850 PF09619 Type III secretion system lipoprotein chaperone (YscW) J4N43_10865 PF01037 Lrp/AsnC ligand binding domain J4N43_10865 PF13404 AsnC-type helix-turn-helix domain J4N43_10870 PF00291 Pyridoxal-phosphate dependent enzyme J4N43_10885 PF00873 AcrB/AcrD/AcrF family J4N43_10890 PF00529 HlyD membrane-fusion protein of T1SS J4N43_10890 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N43_10935 PF07690 Major Facilitator Superfamily J4N43_10940 PF03601 Conserved hypothetical protein 698 J4N43_10950 PF13193 AMP-binding enzyme C-terminal domain J4N43_10950 PF00501 AMP-binding enzyme J4N43_10955 PF13378 Enolase C-terminal domain-like J4N43_10960 PF00378 Enoyl-CoA hydratase/isomerase J4N43_10965 PF12697 Alpha/beta hydrolase family J4N43_10970 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J4N43_10970 PF16582 Middle domain of thiamine pyrophosphate J4N43_10970 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J4N43_10975 PF00425 chorismate binding enzyme J4N43_10980 PF00155 Aminotransferase class I and II J4N43_10990 PF01966 HD domain J4N43_10990 PF13286 Phosphohydrolase-associated domain J4N43_11010 PF13145 PPIC-type PPIASE domain J4N43_11015 PF00216 Bacterial DNA-binding protein J4N43_11020 PF00004 ATPase family associated with various cellular activities (AAA) J4N43_11020 PF05362 Lon protease (S16) C-terminal proteolytic domain J4N43_11020 PF02190 ATP-dependent protease La (LON) substrate-binding domain J4N43_11025 PF06689 ClpX C4-type zinc finger J4N43_11025 PF07724 AAA domain (Cdc48 subfamily) J4N43_11025 PF10431 C-terminal, D2-small domain, of ClpB protein J4N43_11030 PF00574 Clp protease J4N43_11035 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N43_11035 PF05698 Bacterial trigger factor protein (TF) C-terminus J4N43_11035 PF05697 Bacterial trigger factor protein (TF) J4N43_11040 PF02743 Cache domain J4N43_11040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_11040 PF00512 His Kinase A (phospho-acceptor) domain J4N43_11045 PF02954 Bacterial regulatory protein, Fis family J4N43_11045 PF00072 Response regulator receiver domain J4N43_11045 PF00158 Sigma-54 interaction domain J4N43_11050 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J4N43_11055 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component J4N43_11060 PF03480 Bacterial extracellular solute-binding protein, family 7 J4N43_11065 PF02696 Uncharacterized ACR, YdiU/UPF0061 family J4N43_11080 PF02386 Cation transport protein J4N43_11085 PF02254 TrkA-N domain J4N43_11085 PF02080 TrkA-C domain J4N43_11090 PF00271 Helicase conserved C-terminal domain J4N43_11090 PF00270 DEAD/DEAH box helicase J4N43_11100 PF04820 Tryptophan halogenase J4N43_11125 PF00550 Phosphopantetheine attachment site J4N43_11130 PF00550 Phosphopantetheine attachment site J4N43_11145 PF07977 FabA-like domain J4N43_11150 PF00535 Glycosyl transferase family 2 J4N43_11155 PF00221 Aromatic amino acid lyase J4N43_11180 PF00109 Beta-ketoacyl synthase, N-terminal domain J4N43_11180 PF02801 Beta-ketoacyl synthase, C-terminal domain J4N43_11185 PF07977 FabA-like domain J4N43_11195 PF00109 Beta-ketoacyl synthase, N-terminal domain J4N43_11195 PF02801 Beta-ketoacyl synthase, C-terminal domain J4N43_11200 PF01209 ubiE/COQ5 methyltransferase family J4N43_11210 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain J4N43_11210 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain J4N43_11215 PF01773 Na+ dependent nucleoside transporter N-terminus J4N43_11215 PF07662 Na+ dependent nucleoside transporter C-terminus J4N43_11215 PF07670 Nucleoside recognition J4N43_11220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_11220 PF03466 LysR substrate binding domain J4N43_11225 PF13406 Transglycosylase SLT domain J4N43_11230 PF05166 YcgL domain J4N43_11235 PF05209 Septum formation inhibitor MinC, N-terminal domain J4N43_11235 PF03775 Septum formation inhibitor MinC, C-terminal domain J4N43_11240 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J4N43_11245 PF03776 Septum formation topological specificity factor MinE J4N43_11250 PF00570 HRDC domain J4N43_11250 PF01612 3'-5' exonuclease J4N43_11255 PF13193 AMP-binding enzyme C-terminal domain J4N43_11255 PF00501 AMP-binding enzyme J4N43_11260 PF00561 alpha/beta hydrolase fold J4N43_11265 PF03843 Outer membrane lipoprotein Slp family J4N43_11275 PF00814 Glycoprotease family J4N43_11280 PF13307 Helicase C-terminal domain J4N43_11280 PF04851 Type III restriction enzyme, res subunit J4N43_11285 PF00551 Formyl transferase J4N43_11285 PF01842 ACT domain J4N43_11290 PF06185 YecM protein J4N43_11295 PF00750 tRNA synthetases class I (R) J4N43_11295 PF05746 DALR anticodon binding domain J4N43_11295 PF03485 Arginyl tRNA synthetase N terminal domain J4N43_11315 PF07670 Nucleoside recognition J4N43_11315 PF17910 FeoB cytosolic helical domain J4N43_11315 PF07664 Ferrous iron transport protein B C terminus J4N43_11315 PF02421 Ferrous iron transport protein B J4N43_11320 PF04023 FeoA domain J4N43_11325 PF12833 Helix-turn-helix domain J4N43_11325 PF02311 AraC-like ligand binding domain J4N43_11330 PF01297 Zinc-uptake complex component A periplasmic J4N43_11335 PF00005 ABC transporter J4N43_11340 PF00950 ABC 3 transport family J4N43_11345 PF02629 CoA binding domain J4N43_11345 PF00549 CoA-ligase J4N43_11350 PF08442 ATP-grasp domain J4N43_11350 PF00549 CoA-ligase J4N43_11355 PF02817 e3 binding domain J4N43_11355 PF00364 Biotin-requiring enzyme J4N43_11355 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J4N43_11360 PF02779 Transketolase, pyrimidine binding domain J4N43_11360 PF16870 2-oxoglutarate dehydrogenase C-terminal J4N43_11360 PF00676 Dehydrogenase E1 component J4N43_11360 PF16078 2-oxoglutarate dehydrogenase N-terminus J4N43_11365 PF13085 2Fe-2S iron-sulfur cluster binding domain J4N43_11370 PF02910 Fumarate reductase flavoprotein C-term J4N43_11370 PF00890 FAD binding domain J4N43_11375 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit J4N43_11380 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit J4N43_11385 PF00285 Citrate synthase, C-terminal domain J4N43_11390 PF01784 NIF3 (NGG1p interacting factor 3) J4N43_11400 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J4N43_11400 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J4N43_11400 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J4N43_11400 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J4N43_11405 PF03925 SeqA protein C-terminal domain J4N43_11405 PF17206 SeqA protein N-terminal domain J4N43_11410 PF12697 Alpha/beta hydrolase family J4N43_11420 PF00258 Flavodoxin J4N43_11430 PF01475 Ferric uptake regulator family J4N43_11435 PF00749 tRNA synthetases class I (E and Q), catalytic domain J4N43_11435 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain J4N43_11440 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 J4N43_11440 PF00367 phosphotransferase system, EIIB J4N43_11440 PF02378 Phosphotransferase system, EIIC J4N43_11445 PF01979 Amidohydrolase family J4N43_11450 PF01047 MarR family J4N43_11450 PF00480 ROK family J4N43_11455 PF02254 TrkA-N domain J4N43_11455 PF00999 Sodium/hydrogen exchanger family J4N43_11460 PF13537 Glutamine amidotransferase domain J4N43_11460 PF00733 Asparagine synthase J4N43_11465 PF02357 Transcription termination factor nusG J4N43_11470 PF00854 POT family J4N43_11480 PF05191 Adenylate kinase, active site lid J4N43_11485 PF00183 Hsp90 protein J4N43_11485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_11490 PF00486 Transcriptional regulatory protein, C terminal J4N43_11495 PF17323 Trans-membrane regulatory protein ToxS J4N43_11510 PF12850 Calcineurin-like phosphoesterase superfamily domain J4N43_11530 PF07556 Protein of unknown function (DUF1538) J4N43_11535 PF07556 Protein of unknown function (DUF1538) J4N43_11540 PF08338 Domain of unknown function (DUF1731) J4N43_11540 PF01370 NAD dependent epimerase/dehydratase family J4N43_11545 PF00106 short chain dehydrogenase J4N43_11550 PF00085 Thioredoxin J4N43_11555 PF01145 SPFH domain / Band 7 family J4N43_11555 PF16200 C-terminal region of band_7 J4N43_11570 PF03573 outer membrane porin, OprD family J4N43_11575 PF00533 BRCA1 C Terminus (BRCT) domain J4N43_11575 PF03120 NAD-dependent DNA ligase OB-fold domain J4N43_11575 PF01653 NAD-dependent DNA ligase adenylation domain J4N43_11575 PF03119 NAD-dependent DNA ligase C4 zinc finger domain J4N43_11575 PF12826 Helix-hairpin-helix motif J4N43_11580 PF04354 ZipA, C-terminal FtsZ-binding domain J4N43_11590 PF00291 Pyridoxal-phosphate dependent enzyme J4N43_11595 PF00381 PTS HPr component phosphorylation site J4N43_11600 PF00391 PEP-utilising enzyme, mobile domain J4N43_11600 PF05524 PEP-utilising enzyme, N-terminal J4N43_11600 PF02896 PEP-utilising enzyme, TIM barrel domain J4N43_11605 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 J4N43_11610 PF00700 Bacterial flagellin C-terminal helical region J4N43_11610 PF07196 Flagellin hook IN motif J4N43_11610 PF00669 Bacterial flagellin N-terminal helical region J4N43_11620 PF00700 Bacterial flagellin C-terminal helical region J4N43_11620 PF07196 Flagellin hook IN motif J4N43_11620 PF00669 Bacterial flagellin N-terminal helical region J4N43_11625 PF00669 Bacterial flagellin N-terminal helical region J4N43_11630 PF07196 Flagellin hook IN motif J4N43_11630 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N43_11635 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase J4N43_11635 PF10135 Rod binding protein J4N43_11640 PF02119 Flagellar P-ring protein J4N43_11645 PF02107 Flagellar L-ring protein J4N43_11650 PF00460 Flagella basal body rod protein J4N43_11650 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N43_11655 PF00460 Flagella basal body rod protein J4N43_11655 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N43_11660 PF07559 Flagellar basal body protein FlaE J4N43_11660 PF00460 Flagella basal body rod protein J4N43_11660 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N43_11665 PF13861 FlgD Tudor-like domain J4N43_11665 PF03963 Flagellar hook capping protein - N-terminal region J4N43_11665 PF13860 FlgD Ig-like domain J4N43_11670 PF00460 Flagella basal body rod protein J4N43_11670 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N43_11675 PF00460 Flagella basal body rod protein J4N43_11680 PF01797 Transposase IS200 like J4N43_11685 PF03705 CheR methyltransferase, all-alpha domain J4N43_11685 PF01739 CheR methyltransferase, SAM binding domain J4N43_11690 PF01584 CheW-like domain J4N43_11690 PF00072 Response regulator receiver domain J4N43_11735 PF00691 OmpA family J4N43_11735 PF01389 OmpA-like transmembrane domain J4N43_11740 PF00749 tRNA synthetases class I (E and Q), catalytic domain J4N43_11745 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) J4N43_11750 PF13609 Gram-negative porin J4N43_11755 PF00403 Heavy-metal-associated domain J4N43_11770 PF03173 Putative carbohydrate binding domain J4N43_11770 PF00728 Glycosyl hydrolase family 20, catalytic domain J4N43_11770 PF02838 Glycosyl hydrolase family 20, domain 2 J4N43_11770 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain J4N43_11795 PF01713 Smr domain J4N43_11800 PF00849 RNA pseudouridylate synthase J4N43_11800 PF01479 S4 domain J4N43_11805 PF04073 Aminoacyl-tRNA editing domain J4N43_11810 PF02872 5'-nucleotidase, C-terminal domain J4N43_11810 PF00149 Calcineurin-like phosphoesterase J4N43_11815 PF00793 DAHP synthetase I family J4N43_11820 PF13369 Transglutaminase-like superfamily J4N43_11825 PF04247 Invasion gene expression up-regulator, SirB J4N43_11830 PF13847 Methyltransferase domain J4N43_11830 PF17827 PrmC N-terminal domain J4N43_11835 PF03462 PCRF domain J4N43_11835 PF00472 RF-1 domain J4N43_11840 PF01488 Shikimate / quinate 5-dehydrogenase J4N43_11840 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain J4N43_11840 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain J4N43_11845 PF03550 Outer membrane lipoprotein LolB J4N43_11850 PF08544 GHMP kinases C terminal J4N43_11850 PF00288 GHMP kinases N terminal domain J4N43_11855 PF14572 Phosphoribosyl synthetase-associated domain J4N43_11855 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase J4N43_11860 PF01195 Peptidyl-tRNA hydrolase J4N43_11865 PF06071 Protein of unknown function (DUF933) J4N43_11865 PF01926 50S ribosome-binding GTPase J4N43_11970 PF01494 FAD binding domain J4N43_11975 PF04055 Radical SAM superfamily J4N43_11975 PF01938 TRAM domain J4N43_11975 PF00919 Uncharacterized protein family UPF0004 J4N43_11980 PF02562 PhoH-like protein J4N43_11985 PF02130 Uncharacterized protein family UPF0054 J4N43_11990 PF00571 CBS domain J4N43_11990 PF03471 Transporter associated domain J4N43_11995 PF00795 Carbon-nitrogen hydrolase J4N43_12000 PF01797 Transposase IS200 like J4N43_12005 PF07295 Zinc-ribbon containing domain J4N43_12010 PF00133 tRNA synthetases class I (I, L, M and V) J4N43_12010 PF13603 Leucyl-tRNA synthetase, Domain 2 J4N43_12010 PF08264 Anticodon-binding domain of tRNA J4N43_12015 PF04390 Lipopolysaccharide-assembly J4N43_12020 PF06144 DNA polymerase III, delta subunit J4N43_12020 PF14840 Processivity clamp loader gamma complex DNA pol III C-term J4N43_12030 PF02590 Predicted SPOUT methyltransferase J4N43_12035 PF03717 Penicillin-binding Protein dimerisation domain J4N43_12035 PF00905 Penicillin binding protein transpeptidase domain J4N43_12040 PF01098 Cell cycle protein J4N43_12045 PF03330 Lytic transglycolase J4N43_12045 PF05036 Sporulation related domain J4N43_12050 PF00768 D-alanyl-D-alanine carboxypeptidase J4N43_12050 PF07943 Penicillin-binding protein 5, C-terminal domain J4N43_12055 PF04359 Protein of unknown function (DUF493) J4N43_12060 PF03099 Biotin/lipoate A/B protein ligase family J4N43_12065 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family J4N43_12065 PF04055 Radical SAM superfamily J4N43_12070 PF00464 Serine hydroxymethyltransferase J4N43_12075 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) J4N43_12075 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 J4N43_12090 PF00128 Alpha amylase, catalytic domain J4N43_12090 PF16657 Maltogenic Amylase, C-terminal domain J4N43_12095 PF00367 phosphotransferase system, EIIB J4N43_12095 PF02378 Phosphotransferase system, EIIC J4N43_12100 PF00356 Bacterial regulatory proteins, lacI family J4N43_12110 PF09383 NIL domain J4N43_12110 PF00005 ABC transporter J4N43_12115 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_12120 PF03180 NLPA lipoprotein J4N43_12125 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) J4N43_12130 PF07348 Syd protein (SUKH-2) J4N43_12135 PF14489 QueF-like protein J4N43_12135 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term J4N43_12145 PF00990 Diguanylate cyclase, GGDEF domain J4N43_12150 PF11892 Domain of unknown function (DUF3412) J4N43_12150 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases J4N43_12150 PF03641 Possible lysine decarboxylase J4N43_12155 PF01367 5'-3' exonuclease, C-terminal SAM fold J4N43_12155 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J4N43_12160 PF18125 RlmM ferredoxin-like domain J4N43_12160 PF01728 FtsJ-like methyltransferase J4N43_12165 PF04241 Protein of unknown function (DUF423) J4N43_12175 PF03466 LysR substrate binding domain J4N43_12175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_12180 PF02568 Thiamine biosynthesis protein (ThiI) J4N43_12180 PF02926 THUMP domain J4N43_12185 PF13677 Membrane MotB of proton-channel complex MotA/MotB J4N43_12185 PF00691 OmpA family J4N43_12190 PF01618 MotA/TolQ/ExbB proton channel family J4N43_12195 PF02609 Exonuclease VII small subunit J4N43_12200 PF00348 Polyprenyl synthetase J4N43_12205 PF13292 1-deoxy-D-xylulose-5-phosphate synthase J4N43_12205 PF02779 Transketolase, pyrimidine binding domain J4N43_12205 PF02780 Transketolase, C-terminal domain J4N43_12210 PF04608 Phosphatidylglycerophosphatase A J4N43_12215 PF00586 AIR synthase related protein, N-terminal domain J4N43_12215 PF02769 AIR synthase related protein, C-terminal domain J4N43_12220 PF01029 NusB family J4N43_12225 PF00885 6,7-dimethyl-8-ribityllumazine synthase J4N43_12230 PF00925 GTP cyclohydrolase II J4N43_12230 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase J4N43_12235 PF00677 Lumazine binding domain J4N43_12240 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J4N43_12240 PF01872 RibD C-terminal domain J4N43_12245 PF03477 ATP cone domain J4N43_12250 PF00171 Aldehyde dehydrogenase family J4N43_12255 PF00696 Amino acid kinase family J4N43_12255 PF01472 PUA domain J4N43_12260 PF07417 Sigma factor-binding transcriptional regulator Crl J4N43_12265 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) J4N43_12270 PF00156 Phosphoribosyl transferase domain J4N43_12275 PF00860 Permease family J4N43_12280 PF01546 Peptidase family M20/M25/M40 J4N43_12280 PF07687 Peptidase dimerisation domain J4N43_12295 PF07715 TonB-dependent Receptor Plug Domain J4N43_12295 PF00593 TonB dependent receptor J4N43_12310 PF02769 AIR synthase related protein, C-terminal domain J4N43_12310 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain J4N43_12310 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal J4N43_12315 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N43_12315 PF01464 Transglycosylase SLT domain J4N43_12320 PF14437 MafB19-like deaminase J4N43_12325 PF03806 AbgT putative transporter family J4N43_12355 PF00226 DnaJ domain J4N43_12355 PF01556 DnaJ C terminal domain J4N43_12355 PF00684 DnaJ central domain J4N43_12360 PF00012 Hsp70 protein J4N43_12365 PF00375 Sodium:dicarboxylate symporter family J4N43_12370 PF01025 GrpE J4N43_12375 PF01513 ATP-NAD kinase J4N43_12385 PF02463 RecF/RecN/SMC N terminal domain J4N43_12395 PF04355 SmpA / OmlA family J4N43_12400 PF03658 RnfH family Ubiquitin J4N43_12405 PF03364 Polyketide cyclase / dehydrase and lipid transport J4N43_12410 PF01668 SmpB protein J4N43_12455 PF02384 N-6 DNA Methylase J4N43_12485 PF00075 RNase H J4N43_12500 PF02796 Helix-turn-helix domain of resolvase J4N43_12500 PF00239 Resolvase, N terminal domain J4N43_12520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_12520 PF03466 LysR substrate binding domain J4N43_12525 PF00583 Acetyltransferase (GNAT) family J4N43_12525 PF00795 Carbon-nitrogen hydrolase J4N43_12545 PF00202 Aminotransferase class-III J4N43_12550 PF01053 Cys/Met metabolism PLP-dependent enzyme J4N43_12560 PF01266 FAD dependent oxidoreductase J4N43_12565 PF01235 Sodium:alanine symporter family J4N43_12570 PF01184 GPR1/FUN34/yaaH family J4N43_12575 PF06483 Chitinase C J4N43_12575 PF00704 Glycosyl hydrolases family 18 J4N43_12580 PF03553 Na+/H+ antiporter family J4N43_12585 PF00117 Glutamine amidotransferase class-I J4N43_12585 PF00958 GMP synthase C terminal domain J4N43_12585 PF02540 NAD synthase J4N43_12590 PF00571 CBS domain J4N43_12590 PF00478 IMP dehydrogenase / GMP reductase domain J4N43_12595 PF02601 Exonuclease VII, large subunit J4N43_12595 PF13742 OB-fold nucleic acid binding domain J4N43_12610 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal J4N43_12610 PF01926 50S ribosome-binding GTPase J4N43_12615 PF13360 PQQ-like domain J4N43_12620 PF09976 Tetratricopeptide repeat-like domain J4N43_12625 PF13393 Histidyl-tRNA synthetase J4N43_12625 PF03129 Anticodon binding domain J4N43_12630 PF04551 GcpE protein J4N43_12635 PF13464 Domain of unknown function (DUF4115) J4N43_12640 PF04055 Radical SAM superfamily J4N43_12645 PF00334 Nucleoside diphosphate kinase J4N43_12650 PF12404 Peptidase J4N43_12650 PF00883 Cytosol aminopeptidase family, catalytic domain J4N43_12655 PF04384 Iron-sulphur cluster assembly J4N43_12660 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N43_12665 PF00012 Hsp70 protein J4N43_12670 PF00226 DnaJ domain J4N43_12670 PF07743 HSCB C-terminal oligomerisation domain J4N43_12675 PF01521 Iron-sulphur cluster biosynthesis J4N43_12680 PF01592 NifU-like N terminal domain J4N43_12685 PF00266 Aminotransferase class-V J4N43_12690 PF02082 Transcriptional regulator J4N43_12695 PF00588 SpoU rRNA Methylase family J4N43_12700 PF00459 Inositol monophosphatase family J4N43_12715 PF07549 SecD/SecF GG Motif J4N43_12715 PF02355 Protein export membrane protein J4N43_12720 PF07549 SecD/SecF GG Motif J4N43_12720 PF13721 SecD export protein N-terminal TM region J4N43_12720 PF02355 Protein export membrane protein J4N43_12725 PF02699 Preprotein translocase subunit J4N43_12730 PF01702 Queuine tRNA-ribosyltransferase J4N43_12735 PF02547 Queuosine biosynthesis protein J4N43_12745 PF00571 CBS domain J4N43_12750 PF00463 Isocitrate lyase family J4N43_12755 PF01274 Malate synthase J4N43_12760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_12760 PF03466 LysR substrate binding domain J4N43_12765 PF10417 C-terminal domain of 1-Cys peroxiredoxin J4N43_12765 PF00578 AhpC/TSA family J4N43_12770 PF03932 CutC family J4N43_12775 PF03976 Polyphosphate kinase 2 (PPK2) J4N43_12780 PF01895 PhoU domain J4N43_12785 PF00005 ABC transporter J4N43_12790 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_12795 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_12800 PF02503 Polyphosphate kinase middle domain J4N43_12800 PF13090 Polyphosphate kinase C-terminal domain 2 J4N43_12800 PF17941 Polyphosphate kinase C-terminal domain 1 J4N43_12800 PF13089 Polyphosphate kinase N-terminal domain J4N43_12805 PF02541 Ppx/GppA phosphatase family J4N43_12810 PF12849 PBP superfamily domain J4N43_12815 PF11808 Phosphate regulon sensor protein PhoR J4N43_12815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_12815 PF00512 His Kinase A (phospho-acceptor) domain J4N43_12815 PF00989 PAS fold J4N43_12820 PF00072 Response regulator receiver domain J4N43_12820 PF00486 Transcriptional regulatory protein, C terminal J4N43_12825 PF04381 Putative exonuclease, RdgC J4N43_12830 PF01136 Peptidase family U32 J4N43_12830 PF16325 Peptidase family U32 C-terminal domain J4N43_12835 PF00037 4Fe-4S binding domain J4N43_12845 PF03411 Penicillin-insensitive murein endopeptidase J4N43_12890 PF02861 Clp amino terminal domain, pathogenicity island component J4N43_12890 PF10431 C-terminal, D2-small domain, of ClpB protein J4N43_12890 PF07724 AAA domain (Cdc48 subfamily) J4N43_12890 PF00004 ATPase family associated with various cellular activities (AAA) J4N43_12890 PF17871 AAA lid domain J4N43_12895 PF02578 Multi-copper polyphenol oxidoreductase laccase J4N43_12900 PF00849 RNA pseudouridylate synthase J4N43_12900 PF01479 S4 domain J4N43_12905 PF13525 Outer membrane lipoprotein J4N43_12910 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N43_12910 PF01464 Transglycosylase SLT domain J4N43_12915 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein J4N43_12920 PF00800 Prephenate dehydratase J4N43_12920 PF01817 Chorismate mutase type II J4N43_12925 PF01931 Protein of unknown function DUF84 J4N43_12930 PF01371 Trp repressor protein J4N43_12935 PF14718 Soluble lytic murein transglycosylase L domain J4N43_12935 PF01464 Transglycosylase SLT domain J4N43_12940 PF12848 ABC transporter J4N43_12940 PF00005 ABC transporter J4N43_12945 PF07238 PilZ domain J4N43_12950 PF04225 Opacity-associated protein A LysM-like domain J4N43_12950 PF01551 Peptidase family M23 J4N43_12955 PF01817 Chorismate mutase type II J4N43_12955 PF02153 Prephenate dehydrogenase J4N43_12960 PF00793 DAHP synthetase I family J4N43_12965 PF00933 Glycosyl hydrolase family 3 N terminal domain J4N43_12970 PF03702 Anhydro-N-acetylmuramic acid kinase J4N43_12975 PF01380 SIS domain J4N43_12990 PF02554 Carbon starvation protein CstA J4N43_12995 PF06580 Histidine kinase J4N43_12995 PF07694 5TMR of 5TMR-LYT J4N43_13000 PF04397 LytTr DNA-binding domain J4N43_13000 PF00072 Response regulator receiver domain J4N43_13010 PF02401 LytB protein J4N43_13015 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N43_13020 PF01252 Signal peptidase (SPase) II J4N43_13025 PF08264 Anticodon-binding domain of tRNA J4N43_13025 PF00133 tRNA synthetases class I (I, L, M and V) J4N43_13025 PF06827 Zinc finger found in FPG and IleRS J4N43_13030 PF06574 FAD synthetase J4N43_13030 PF01687 Riboflavin kinase J4N43_13035 PF03023 Lipid II flippase MurJ J4N43_13040 PF01649 Ribosomal protein S20 J4N43_13045 PF01797 Transposase IS200 like J4N43_13050 PF01022 Bacterial regulatory protein, arsR family J4N43_13055 PF03466 LysR substrate binding domain J4N43_13055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_13060 PF02690 Na+/Pi-cotransporter J4N43_13070 PF00303 Thymidylate synthase J4N43_13075 PF01790 Prolipoprotein diacylglyceryl transferase J4N43_13080 PF01925 Sulfite exporter TauE/SafE J4N43_13090 PF00293 NUDIX domain J4N43_13095 PF02976 DNA mismatch repair enzyme MutH J4N43_13105 PF00248 Aldo/keto reductase family J4N43_13115 PF02954 Bacterial regulatory protein, Fis family J4N43_13115 PF00072 Response regulator receiver domain J4N43_13115 PF00158 Sigma-54 interaction domain J4N43_13120 PF00152 tRNA synthetases class II (D, K and N) J4N43_13120 PF01336 OB-fold nucleic acid binding domain J4N43_13130 PF02272 DHHA1 domain J4N43_13130 PF17768 RecJ OB domain J4N43_13130 PF01368 DHH family J4N43_13135 PF10411 Disulfide bond isomerase protein N-terminus J4N43_13135 PF13098 Thioredoxin-like domain J4N43_13140 PF02899 Phage integrase, N-terminal SAM-like domain J4N43_13140 PF00589 Phage integrase family J4N43_13145 PF00258 Flavodoxin J4N43_13150 PF05525 Branched-chain amino acid transport protein J4N43_13155 PF05175 Methyltransferase small domain J4N43_13160 PF00271 Helicase conserved C-terminal domain J4N43_13160 PF00270 DEAD/DEAH box helicase J4N43_13165 PF03883 Peroxide stress protein YaaA J4N43_13170 PF01235 Sodium:alanine symporter family J4N43_13185 PF03167 Uracil DNA glycosylase superfamily J4N43_13190 PF01261 Xylose isomerase-like TIM barrel J4N43_13195 PF01228 Glycine radical J4N43_13205 PF14821 Threonine synthase N terminus J4N43_13205 PF00291 Pyridoxal-phosphate dependent enzyme J4N43_13210 PF00288 GHMP kinases N terminal domain J4N43_13210 PF08544 GHMP kinases C terminal J4N43_13215 PF00696 Amino acid kinase family J4N43_13215 PF01842 ACT domain J4N43_13215 PF13840 ACT domain J4N43_13215 PF00742 Homoserine dehydrogenase J4N43_13215 PF03447 Homoserine dehydrogenase, NAD binding domain J4N43_13230 PF03737 Aldolase/RraA J4N43_13240 PF00072 Response regulator receiver domain J4N43_13240 PF00486 Transcriptional regulatory protein, C terminal J4N43_13250 PF00512 His Kinase A (phospho-acceptor) domain J4N43_13250 PF00072 Response regulator receiver domain J4N43_13250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_13250 PF00989 PAS fold J4N43_13250 PF18415 Histidine kinase receptor ArcB trans-membrane domain J4N43_13250 PF01627 Hpt domain J4N43_13260 PF16199 Radical_SAM C-terminal domain J4N43_13260 PF04055 Radical SAM superfamily J4N43_13265 PF00310 Glutamine amidotransferases class-II J4N43_13265 PF04898 Glutamate synthase central domain J4N43_13265 PF01645 Conserved region in glutamate synthase J4N43_13265 PF01493 GXGXG motif J4N43_13270 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster J4N43_13270 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N43_13275 PF04898 Glutamate synthase central domain J4N43_13275 PF00310 Glutamine amidotransferases class-II J4N43_13275 PF01645 Conserved region in glutamate synthase J4N43_13275 PF01493 GXGXG motif J4N43_13280 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster J4N43_13280 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N43_13290 PF01048 Phosphorylase superfamily J4N43_13295 PF17113 Regulatory signalling modulator protein AmpE J4N43_13295 PF03186 CobD/Cbib protein J4N43_13300 PF01497 Periplasmic binding protein J4N43_13305 PF03458 UPF0126 domain J4N43_13310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_13310 PF03466 LysR substrate binding domain J4N43_13315 PF01925 Sulfite exporter TauE/SafE J4N43_13330 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J4N43_13330 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain J4N43_13330 PF02142 MGS-like domain J4N43_13335 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain J4N43_13335 PF00117 Glutamine amidotransferase class-I J4N43_13340 PF01113 Dihydrodipicolinate reductase, N-terminus J4N43_13340 PF05173 Dihydrodipicolinate reductase, C-terminus J4N43_13345 PF00293 NUDIX domain J4N43_13350 PF07516 SecA Wing and Scaffold domain J4N43_13350 PF01043 SecA preprotein cross-linking domain J4N43_13350 PF07517 SecA DEAD-like domain J4N43_13350 PF02810 SEC-C motif J4N43_13360 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase J4N43_13365 PF00091 Tubulin/FtsZ family, GTPase domain J4N43_13365 PF12327 FtsZ family, C-terminal domain J4N43_13370 PF02491 SHS2 domain inserted in FTSA J4N43_13375 PF03799 Cell division protein FtsQ J4N43_13375 PF08478 POTRA domain, FtsQ-type J4N43_13380 PF08245 Mur ligase middle domain J4N43_13380 PF02875 Mur ligase family, glutamate ligase domain J4N43_13380 PF01225 Mur ligase family, catalytic domain J4N43_13385 PF04101 Glycosyltransferase family 28 C-terminal domain J4N43_13385 PF03033 Glycosyltransferase family 28 N-terminal domain J4N43_13390 PF01098 Cell cycle protein J4N43_13395 PF08245 Mur ligase middle domain J4N43_13395 PF02875 Mur ligase family, glutamate ligase domain J4N43_13400 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 J4N43_13400 PF00953 Glycosyl transferase family 4 J4N43_13405 PF01225 Mur ligase family, catalytic domain J4N43_13405 PF02875 Mur ligase family, glutamate ligase domain J4N43_13405 PF08245 Mur ligase middle domain J4N43_13410 PF08245 Mur ligase middle domain J4N43_13410 PF01225 Mur ligase family, catalytic domain J4N43_13410 PF02875 Mur ligase family, glutamate ligase domain J4N43_13415 PF03717 Penicillin-binding Protein dimerisation domain J4N43_13415 PF00905 Penicillin binding protein transpeptidase domain J4N43_13420 PF04999 Cell division protein FtsL J4N43_13425 PF01795 MraW methylase family J4N43_13435 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N43_13440 PF04348 LppC putative lipoprotein J4N43_13445 PF02021 Uncharacterised protein family UPF0102 J4N43_13450 PF13580 SIS domain J4N43_13455 PF04972 BON domain J4N43_13460 PF04386 Stringent starvation protein B J4N43_13465 PF00043 Glutathione S-transferase, C-terminal domain J4N43_13465 PF02798 Glutathione S-transferase, N-terminal domain J4N43_13470 PF02167 Cytochrome C1 family J4N43_13475 PF00032 Cytochrome b(C-terminal)/b6/petD J4N43_13475 PF00033 Cytochrome b/b6/petB J4N43_13480 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal J4N43_13480 PF00355 Rieske [2Fe-2S] domain J4N43_13485 PF00380 Ribosomal protein S9/S16 J4N43_13490 PF00572 Ribosomal protein L13 J4N43_13495 PF03969 AFG1-like ATPase J4N43_13500 PF06295 Protein of unknown function (DUF1043) J4N43_13505 PF00595 PDZ domain J4N43_13510 PF13180 PDZ domain J4N43_13515 PF00521 DNA gyrase/topoisomerase IV, subunit A J4N43_13515 PF03989 DNA gyrase C-terminal domain, beta-propeller J4N43_13520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_13520 PF00204 DNA gyrase B J4N43_13520 PF01751 Toprim domain J4N43_13520 PF00986 DNA gyrase B subunit, carboxyl terminus J4N43_13525 PF05728 Uncharacterised protein family (UPF0227) J4N43_13530 PF00149 Calcineurin-like phosphoesterase J4N43_13535 PF06853 Protein of unknown function (DUF1249) J4N43_13540 PF00293 NUDIX domain J4N43_13545 PF02321 Outer membrane efflux protein J4N43_13550 PF01467 Cytidylyltransferase-like J4N43_13550 PF00294 pfkB family carbohydrate kinase J4N43_13555 PF08335 GlnD PII-uridylyltransferase J4N43_13555 PF03710 Glutamate-ammonia ligase adenylyltransferase J4N43_13560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N43_13560 PF02743 Cache domain J4N43_13560 PF00672 HAMP domain J4N43_13570 PF01928 CYTH domain J4N43_13575 PF01865 Protein of unknown function DUF47 J4N43_13580 PF01384 Phosphate transporter family J4N43_13585 PF08239 Bacterial SH3 domain J4N43_13600 PF13401 AAA domain J4N43_13600 PF01471 Putative peptidoglycan binding domain J4N43_13605 PF01743 Poly A polymerase head domain J4N43_13605 PF01966 HD domain J4N43_13605 PF12627 Probable RNA and SrmB- binding site of polymerase A J4N43_13610 PF02673 Bacitracin resistance protein BacA J4N43_13615 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J4N43_13620 PF02152 Dihydroneopterin aldolase J4N43_13625 PF02660 Glycerol-3-phosphate acyltransferase J4N43_13630 PF00561 alpha/beta hydrolase fold J4N43_13635 PF00814 Glycoprotease family J4N43_13640 PF01165 Ribosomal protein S21 J4N43_13645 PF09424 Yqey-like protein J4N43_13650 PF01807 CHC2 zinc finger J4N43_13650 PF10410 DnaB-helicase binding domain of primase J4N43_13650 PF08278 DNA primase DnaG DnaB-binding J4N43_13650 PF08275 DNA primase catalytic core, N-terminal domain J4N43_13655 PF04546 Sigma-70, non-essential region J4N43_13655 PF03979 Sigma-70 factor, region 1.1 J4N43_13655 PF00140 Sigma-70 factor, region 1.2 J4N43_13655 PF04542 Sigma-70 region 2 J4N43_13655 PF04539 Sigma-70 region 3 J4N43_13655 PF04545 Sigma-70, region 4 J4N43_13680 PF00589 Phage integrase family J4N43_13680 PF02899 Phage integrase, N-terminal SAM-like domain J4N43_13700 PF03180 NLPA lipoprotein J4N43_13720 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N43_13720 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N43_13720 PF02378 Phosphotransferase system, EIIC J4N43_13725 PF01232 Mannitol dehydrogenase Rossmann domain J4N43_13725 PF08125 Mannitol dehydrogenase C-terminal domain J4N43_13730 PF05068 Mannitol repressor J4N43_13735 PF00158 Sigma-54 interaction domain J4N43_13735 PF00989 PAS fold J4N43_13735 PF02954 Bacterial regulatory protein, Fis family J4N43_13740 PF02896 PEP-utilising enzyme, TIM barrel domain J4N43_13740 PF00391 PEP-utilising enzyme, mobile domain J4N43_13740 PF05524 PEP-utilising enzyme, N-terminal J4N43_13745 PF02734 DAK2 domain J4N43_13750 PF02733 Dak1 domain J4N43_13755 PF00465 Iron-containing alcohol dehydrogenase J4N43_13760 PF01380 SIS domain J4N43_13765 PF00455 DeoR C terminal sensor domain J4N43_13765 PF08220 DeoR-like helix-turn-helix domain J4N43_13770 PF00224 Pyruvate kinase, barrel domain J4N43_13770 PF02887 Pyruvate kinase, alpha/beta domain J4N43_13780 PF00990 Diguanylate cyclase, GGDEF domain J4N43_13785 PF10369 Small subunit of acetolactate synthase J4N43_13790 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J4N43_13790 PF00205 Thiamine pyrophosphate enzyme, central domain J4N43_13790 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J4N43_13795 PF00501 AMP-binding enzyme J4N43_13800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_13800 PF03466 LysR substrate binding domain J4N43_13810 PF01569 PAP2 superfamily J4N43_13820 PF08502 LeuA allosteric (dimerisation) domain J4N43_13820 PF00682 HMGL-like J4N43_13825 PF00180 Isocitrate/isopropylmalate dehydrogenase J4N43_13830 PF00330 Aconitase family (aconitate hydratase) J4N43_13835 PF00694 Aconitase C-terminal domain J4N43_13845 PF00226 DnaJ domain J4N43_13845 PF05099 Tellurite resistance protein TerB J4N43_13850 PF04453 LPS transport system D J4N43_13850 PF03968 OstA-like protein J4N43_13855 PF09312 SurA N-terminal domain J4N43_13860 PF04166 Pyridoxal phosphate biosynthetic protein PdxA J4N43_13865 PF00398 Ribosomal RNA adenine dimethylase J4N43_13870 PF04379 ApaG domain J4N43_13875 PF00149 Calcineurin-like phosphoesterase J4N43_13880 PF00186 Dihydrofolate reductase J4N43_13885 PF12821 Threonine/Serine exporter, ThrE J4N43_13890 PF06738 Putative threonine/serine exporter J4N43_13895 PF01926 50S ribosome-binding GTPase J4N43_13895 PF01018 GTP1/OBG J4N43_13900 PF01016 Ribosomal L27 protein J4N43_13905 PF00829 Ribosomal prokaryotic L21 protein J4N43_13910 PF00348 Polyprenyl synthetase J4N43_13920 PF00056 lactate/malate dehydrogenase, NAD binding domain J4N43_13920 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain J4N43_13925 PF02863 Arginine repressor, C-terminal domain J4N43_13925 PF01316 Arginine repressor, DNA binding domain J4N43_13930 PF16868 NMT1-like family J4N43_13945 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J4N43_13950 PF03466 LysR substrate binding domain J4N43_13950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_13955 PF00005 ABC transporter J4N43_13960 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_13970 PF02441 Flavoprotein J4N43_13975 PF08245 Mur ligase middle domain J4N43_13975 PF01225 Mur ligase family, catalytic domain J4N43_13975 PF02875 Mur ligase family, glutamate ligase domain J4N43_13980 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain J4N43_13985 PF00719 Inorganic pyrophosphatase J4N43_13995 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like J4N43_14000 PF04357 TamB, inner membrane protein subunit of TAM complex J4N43_14005 PF07244 Surface antigen variable number repeat J4N43_14005 PF17243 POTRA domain TamA domain 1 J4N43_14005 PF01103 Surface antigen J4N43_14010 PF01625 Peptide methionine sulfoxide reductase J4N43_14015 PF06526 Protein of unknown function (DUF1107) J4N43_14020 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) J4N43_14025 PF10795 Protein of unknown function (DUF2607) J4N43_14035 PF00005 ABC transporter J4N43_14060 PF02080 TrkA-C domain J4N43_14060 PF03600 Citrate transporter J4N43_14065 PF00009 Elongation factor Tu GTP binding domain J4N43_14070 PF01507 Phosphoadenosine phosphosulfate reductase family J4N43_14075 PF10414 Sirohaem synthase dimerisation region J4N43_14075 PF14824 Sirohaem biosynthesis protein central J4N43_14075 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N43_14080 PF02872 5'-nucleotidase, C-terminal domain J4N43_14080 PF00149 Calcineurin-like phosphoesterase J4N43_14090 PF03880 DbpA RNA binding domain J4N43_14090 PF00270 DEAD/DEAH box helicase J4N43_14090 PF00271 Helicase conserved C-terminal domain J4N43_14095 PF13673 Acetyltransferase (GNAT) domain J4N43_14105 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N43_14105 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J4N43_14115 PF01196 Ribosomal protein L17 J4N43_14120 PF01000 RNA polymerase Rpb3/RpoA insert domain J4N43_14120 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain J4N43_14120 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain J4N43_14125 PF00163 Ribosomal protein S4/S9 N-terminal domain J4N43_14125 PF01479 S4 domain J4N43_14130 PF00411 Ribosomal protein S11 J4N43_14135 PF00416 Ribosomal protein S13/S18 J4N43_14140 PF00444 Ribosomal protein L36 J4N43_14145 PF00344 SecY translocase J4N43_14150 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A J4N43_14155 PF00327 Ribosomal protein L30p/L7e J4N43_14160 PF00333 Ribosomal protein S5, N-terminal domain J4N43_14160 PF03719 Ribosomal protein S5, C-terminal domain J4N43_14165 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast J4N43_14170 PF00347 Ribosomal protein L6 J4N43_14175 PF00410 Ribosomal protein S8 J4N43_14180 PF00253 Ribosomal protein S14p/S29e J4N43_14185 PF00281 Ribosomal protein L5 J4N43_14185 PF00673 ribosomal L5P family C-terminus J4N43_14190 PF00467 KOW motif J4N43_14190 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 J4N43_14195 PF00238 Ribosomal protein L14p/L23e J4N43_14200 PF00366 Ribosomal protein S17 J4N43_14205 PF00831 Ribosomal L29 protein J4N43_14210 PF00252 Ribosomal protein L16p/L10e J4N43_14215 PF00189 Ribosomal protein S3, C-terminal domain J4N43_14215 PF07650 KH domain J4N43_14220 PF00237 Ribosomal protein L22p/L17e J4N43_14225 PF00203 Ribosomal protein S19 J4N43_14230 PF00181 Ribosomal Proteins L2, RNA binding domain J4N43_14230 PF03947 Ribosomal Proteins L2, C-terminal domain J4N43_14235 PF00276 Ribosomal protein L23 J4N43_14240 PF00573 Ribosomal protein L4/L1 family J4N43_14245 PF00297 Ribosomal protein L3 J4N43_14250 PF00338 Ribosomal protein S10p/S20e J4N43_14255 PF01197 Ribosomal protein L31 J4N43_14260 PF17764 3′ DNA-binding domain (3′BD) J4N43_14260 PF18074 Primosomal protein N C-terminal domain J4N43_14260 PF18319 PriA DNA helicase Cys-rich region (CRR) domain J4N43_14260 PF00271 Helicase conserved C-terminal domain J4N43_14260 PF00270 DEAD/DEAH box helicase J4N43_14265 PF00356 Bacterial regulatory proteins, lacI family J4N43_14275 PF00227 Proteasome subunit J4N43_14280 PF00004 ATPase family associated with various cellular activities (AAA) J4N43_14280 PF07724 AAA domain (Cdc48 subfamily) J4N43_14285 PF01040 UbiA prenyltransferase family J4N43_14290 PF03737 Aldolase/RraA J4N43_14295 PF06005 Cell division protein ZapB J4N43_14300 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded J4N43_14305 PF08220 DeoR-like helix-turn-helix domain J4N43_14305 PF00455 DeoR C terminal sensor domain J4N43_14330 PF00121 Triosephosphate isomerase J4N43_14335 PF00483 Nucleotidyl transferase J4N43_14340 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J4N43_14340 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J4N43_14340 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J4N43_14345 PF02719 Polysaccharide biosynthesis protein J4N43_14350 PF00842 Alanine racemase, C-terminal domain J4N43_14350 PF01168 Alanine racemase, N-terminal domain J4N43_14360 PF07478 D-ala D-ala ligase C-terminus J4N43_14360 PF01820 D-ala D-ala ligase N-terminus J4N43_14365 PF02397 Bacterial sugar transferase J4N43_14375 PF03023 Lipid II flippase MurJ J4N43_14380 PF01501 Glycosyl transferase family 8 J4N43_14380 PF00535 Glycosyl transferase family 2 J4N43_14390 PF02348 Cytidylyltransferase J4N43_14395 PF00132 Bacterial transferase hexapeptide (six repeats) J4N43_14395 PF00483 Nucleotidyl transferase J4N43_14405 PF03102 NeuB family J4N43_14405 PF08666 SAF domain J4N43_14410 PF02350 UDP-N-acetylglucosamine 2-epimerase J4N43_14415 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J4N43_14420 PF02719 Polysaccharide biosynthesis protein J4N43_14425 PF02706 Chain length determinant protein J4N43_14455 PF06082 Exopolysaccharide biosynthesis protein YbjH J4N43_14460 PF01370 NAD dependent epimerase/dehydratase family J4N43_14465 PF03279 Bacterial lipid A biosynthesis acyltransferase J4N43_14470 PF01075 Glycosyltransferase family 9 (heptosyltransferase) J4N43_14475 PF00534 Glycosyl transferases group 1 J4N43_14475 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) J4N43_14480 PF07922 Glycosyltransferase family 52 J4N43_14490 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J4N43_14500 PF00483 Nucleotidyl transferase J4N43_14505 PF16363 GDP-mannose 4,6 dehydratase J4N43_14515 PF01219 Prokaryotic diacylglycerol kinase J4N43_14520 PF01075 Glycosyltransferase family 9 (heptosyltransferase) J4N43_14525 PF00535 Glycosyl transferase family 2 J4N43_14530 PF00535 Glycosyl transferase family 2 J4N43_14535 PF01467 Cytidylyltransferase-like J4N43_14540 PF05686 Glycosyl transferase family 90 J4N43_14550 PF06827 Zinc finger found in FPG and IleRS J4N43_14550 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain J4N43_14550 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain J4N43_14560 PF00471 Ribosomal protein L33 J4N43_14565 PF00830 Ribosomal L28 family J4N43_14570 PF04002 RadC-like JAB domain J4N43_14575 PF00672 HAMP domain J4N43_14575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N43_14575 PF17200 Single Cache domain 2 J4N43_14580 PF04127 DNA / pantothenate metabolism flavoprotein J4N43_14580 PF02441 Flavoprotein J4N43_14585 PF00440 Bacterial regulatory proteins, tetR family J4N43_14590 PF03279 Bacterial lipid A biosynthesis acyltransferase J4N43_14595 PF01797 Transposase IS200 like J4N43_14600 PF00156 Phosphoribosyl transferase domain J4N43_14605 PF03725 3' exoribonuclease family, domain 2 J4N43_14605 PF01138 3' exoribonuclease family, domain 1 J4N43_14610 PF08340 Domain of unknown function (DUF1732) J4N43_14610 PF03755 YicC-like family, N-terminal region J4N43_14620 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N43_14620 PF00005 ABC transporter J4N43_14625 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N43_14625 PF00005 ABC transporter J4N43_14630 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N43_14635 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_14635 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N43_14640 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_14645 PF07715 TonB-dependent Receptor Plug Domain J4N43_14645 PF00593 TonB dependent receptor J4N43_14660 PF01618 MotA/TolQ/ExbB proton channel family J4N43_14665 PF02472 Biopolymer transport protein ExbD/TolR J4N43_14680 PF00625 Guanylate kinase J4N43_14685 PF01192 RNA polymerase Rpb6 J4N43_14690 PF04607 Region found in RelA / SpoT proteins J4N43_14690 PF13291 ACT domain J4N43_14690 PF02824 TGS domain J4N43_14695 PF12105 SpoU, rRNA methylase, C-terminal J4N43_14695 PF00588 SpoU rRNA Methylase family J4N43_14700 PF17191 RecG wedge domain J4N43_14700 PF00271 Helicase conserved C-terminal domain J4N43_14700 PF00270 DEAD/DEAH box helicase J4N43_14705 PF00860 Permease family J4N43_14710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_14710 PF00672 HAMP domain J4N43_14710 PF00512 His Kinase A (phospho-acceptor) domain J4N43_14715 PF00072 Response regulator receiver domain J4N43_14715 PF00486 Transcriptional regulatory protein, C terminal J4N43_14725 PF01272 Transcription elongation factor, GreA/GreB, C-term J4N43_14725 PF03449 Transcription elongation factor, N-terminal J4N43_14735 PF17674 HHH domain J4N43_14735 PF00575 S1 RNA binding domain J4N43_14735 PF09371 Tex-like protein N-terminal domain J4N43_14735 PF16921 Tex protein YqgF-like domain J4N43_14745 PF00561 alpha/beta hydrolase fold J4N43_14750 PF00156 Phosphoribosyl transferase domain J4N43_14755 PF01521 Iron-sulphur cluster biosynthesis J4N43_14755 PF01106 NifU-like domain J4N43_14760 PF00293 NUDIX domain J4N43_14765 PF00459 Inositol monophosphatase family J4N43_14770 PF01203 Type II secretion system (T2SS), protein N J4N43_14775 PF04612 Type II secretion system (T2SS), protein M J4N43_14780 PF05134 Type II secretion system (T2SS), protein L J4N43_14780 PF12693 GspL periplasmic domain J4N43_14785 PF03934 Type II secretion system (T2SS), protein K J4N43_14790 PF07963 Prokaryotic N-terminal methylation motif J4N43_14790 PF11612 Type II secretion system (T2SS), protein J J4N43_14795 PF07963 Prokaryotic N-terminal methylation motif J4N43_14795 PF02501 Type II secretion system (T2SS), protein I J4N43_14800 PF12019 Type II transport protein GspH J4N43_14805 PF07963 Prokaryotic N-terminal methylation motif J4N43_14805 PF08334 Type II secretion system (T2SS), protein G J4N43_14810 PF00482 Type II secretion system (T2SS), protein F J4N43_14815 PF00437 Type II/IV secretion system protein J4N43_14820 PF03958 Bacterial type II/III secretion system short domain J4N43_14820 PF00263 Bacterial type II and III secretion system protein J4N43_14825 PF11356 Type II secretion system protein C J4N43_14830 PF01479 S4 domain J4N43_14835 PF01430 Hsp33 protein J4N43_14840 PF01293 Phosphoenolpyruvate carboxykinase J4N43_14850 PF09500 Putative thioesterase (yiiD_Cterm) J4N43_14850 PF00583 Acetyltransferase (GNAT) family J4N43_14855 PF02580 D-Tyr-tRNA(Tyr) deacylase J4N43_14860 PF03631 Virulence factor BrkB J4N43_14870 PF08299 Bacterial dnaA protein helix-turn-helix J4N43_14870 PF00308 Bacterial dnaA protein J4N43_14875 PF03144 Elongation factor Tu domain 2 J4N43_14875 PF00679 Elongation factor G C-terminus J4N43_14875 PF00009 Elongation factor Tu GTP binding domain J4N43_14880 PF03951 Glutamine synthetase, beta-Grasp domain J4N43_14880 PF00120 Glutamine synthetase, catalytic domain J4N43_14890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_14890 PF00989 PAS fold J4N43_14890 PF00512 His Kinase A (phospho-acceptor) domain J4N43_14895 PF02954 Bacterial regulatory protein, Fis family J4N43_14895 PF00072 Response regulator receiver domain J4N43_14895 PF00158 Sigma-54 interaction domain J4N43_14900 PF00563 EAL domain J4N43_14900 PF00990 Diguanylate cyclase, GGDEF domain J4N43_14900 PF03707 Bacterial signalling protein N terminal repeat J4N43_14905 PF00962 Adenosine/AMP deaminase J4N43_14910 PF06969 HemN C-terminal domain J4N43_14910 PF04055 Radical SAM superfamily J4N43_14915 PF10675 Protein of unknown function (DUF2489) J4N43_14920 PF04220 Der GTPase activator (YihI) J4N43_14930 PF00034 Cytochrome c J4N43_14935 PF01926 50S ribosome-binding GTPase J4N43_14940 PF01612 3'-5' exonuclease J4N43_14940 PF00476 DNA polymerase family A J4N43_14940 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J4N43_14940 PF01367 5'-3' exonuclease, C-terminal SAM fold J4N43_14945 PF00583 Acetyltransferase (GNAT) family J4N43_14950 PF00490 Delta-aminolevulinic acid dehydratase J4N43_14955 PF01026 TatD related DNase J4N43_14960 PF00902 Sec-independent protein translocase protein (TatC) J4N43_14965 PF02416 mttA/Hcf106 family J4N43_14970 PF02416 mttA/Hcf106 family J4N43_14975 PF03109 ABC1 family J4N43_14980 PF02036 SCP-2 sterol transfer family J4N43_14985 PF01209 ubiE/COQ5 methyltransferase family J4N43_14990 PF02646 RmuC family J4N43_15000 PF00563 EAL domain J4N43_15000 PF00990 Diguanylate cyclase, GGDEF domain J4N43_15000 PF03707 Bacterial signalling protein N terminal repeat J4N43_15005 PF01594 AI-2E family transporter J4N43_15035 PF00781 Diacylglycerol kinase catalytic domain J4N43_15060 PF02954 Bacterial regulatory protein, Fis family J4N43_15060 PF00158 Sigma-54 interaction domain J4N43_15060 PF01590 GAF domain J4N43_15070 PF10625 Universal stress protein B (UspB) J4N43_15075 PF00210 Ferritin-like domain J4N43_15080 PF00582 Universal stress protein family J4N43_15085 PF00892 EamA-like transporter family J4N43_15095 PF04445 Putative SAM-dependent methyltransferase J4N43_15100 PF00563 EAL domain J4N43_15100 PF00990 Diguanylate cyclase, GGDEF domain J4N43_15100 PF08448 PAS fold J4N43_15105 PF01037 Lrp/AsnC ligand binding domain J4N43_15110 PF01432 Peptidase family M3 J4N43_15115 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ J4N43_15120 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N43_15120 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4N43_15150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_15150 PF03466 LysR substrate binding domain J4N43_15155 PF01048 Phosphorylase superfamily J4N43_15160 PF01081 KDPG and KHG aldolase J4N43_15165 PF02447 GntP family permease J4N43_15170 PF01202 Shikimate kinase J4N43_15175 PF00920 Dehydratase family J4N43_15180 PF00893 Small Multidrug Resistance protein J4N43_15185 PF00893 Small Multidrug Resistance protein J4N43_15190 PF03466 LysR substrate binding domain J4N43_15190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_15195 PF00356 Bacterial regulatory proteins, lacI family J4N43_15195 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family J4N43_15200 PF00069 Protein kinase domain J4N43_15235 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N43_15235 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_15240 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_15245 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N43_15250 PF00005 ABC transporter J4N43_15250 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N43_15255 PF13419 Haloacid dehalogenase-like hydrolase J4N43_15285 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J4N43_15290 PF00580 UvrD/REP helicase N-terminal domain J4N43_15290 PF13361 UvrD-like helicase C-terminal domain J4N43_15295 PF16295 Tetracyclin repressor-like, C-terminal domain J4N43_15295 PF00440 Bacterial regulatory proteins, tetR family J4N43_15300 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N43_15305 PF00873 AcrB/AcrD/AcrF family J4N43_15310 PF04380 Membrane fusogenic activity J4N43_15315 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain J4N43_15315 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain J4N43_15320 PF03466 LysR substrate binding domain J4N43_15320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_15355 PF00132 Bacterial transferase hexapeptide (six repeats) J4N43_15360 PF07369 Protein of unknown function (DUF1488) J4N43_15365 PF08501 Shikimate dehydrogenase substrate binding domain J4N43_15365 PF01488 Shikimate / quinate 5-dehydrogenase J4N43_15365 PF18317 Shikimate 5'-dehydrogenase C-terminal domain J4N43_15370 PF01218 Coproporphyrinogen III oxidase J4N43_15375 PF01300 Telomere recombination J4N43_15380 PF00731 AIR carboxylase J4N43_15385 PF02222 ATP-grasp domain J4N43_15385 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain J4N43_15390 PF01797 Transposase IS200 like J4N43_15395 PF01396 Topoisomerase DNA binding C4 zinc finger J4N43_15400 PF04361 Protein of unknown function (DUF494) J4N43_15405 PF02481 DNA recombination-mediator protein A J4N43_15405 PF17782 DprA winged helix domain J4N43_15415 PF01327 Polypeptide deformylase J4N43_15420 PF02911 Formyl transferase, C-terminal domain J4N43_15420 PF00551 Formyl transferase J4N43_15425 PF01189 16S rRNA methyltransferase RsmB/F J4N43_15425 PF01029 NusB family J4N43_15430 PF02254 TrkA-N domain J4N43_15430 PF02080 TrkA-C domain J4N43_15435 PF02386 Cation transport protein J4N43_15445 PF03006 Haemolysin-III related J4N43_15450 PF07070 SpoOM protein J4N43_15460 PF06288 Protein of unknown function (DUF1040) J4N43_15465 PF13746 4Fe-4S dicluster domain J4N43_15465 PF12801 4Fe-4S binding domain J4N43_15465 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase J4N43_15470 PF01636 Phosphotransferase enzyme family J4N43_15475 PF01323 DSBA-like thioredoxin domain J4N43_15480 PF01553 Acyltransferase J4N43_15490 PF01078 Magnesium chelatase, subunit ChlI J4N43_15490 PF13335 Magnesium chelatase, subunit ChlI C-terminal J4N43_15495 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J4N43_15495 PF00205 Thiamine pyrophosphate enzyme, central domain J4N43_15495 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J4N43_15505 PF01063 Amino-transferase class IV J4N43_15510 PF00920 Dehydratase family J4N43_15515 PF00585 C-terminal regulatory domain of Threonine dehydratase J4N43_15515 PF00291 Pyridoxal-phosphate dependent enzyme J4N43_15520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_15520 PF03466 LysR substrate binding domain J4N43_15525 PF07690 Major Facilitator Superfamily J4N43_15530 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N43_15535 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_15540 PF12804 MobA-like NTP transferase domain J4N43_15540 PF00132 Bacterial transferase hexapeptide (six repeats) J4N43_15545 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain J4N43_15545 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain J4N43_15550 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N43_15550 PF02874 ATP synthase alpha/beta family, beta-barrel domain J4N43_15555 PF00231 ATP synthase J4N43_15560 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N43_15560 PF02874 ATP synthase alpha/beta family, beta-barrel domain J4N43_15560 PF00306 ATP synthase alpha/beta chain, C terminal domain J4N43_15565 PF00213 ATP synthase delta (OSCP) subunit J4N43_15570 PF00430 ATP synthase B/B' CF(0) J4N43_15575 PF00137 ATP synthase subunit C J4N43_15580 PF00119 ATP synthase A chain J4N43_15585 PF03899 ATP synthase I chain J4N43_15590 PF17762 HTH domain found in ParB protein J4N43_15590 PF02195 ParB-like nuclease domain J4N43_15595 PF13614 AAA domain J4N43_15600 PF02527 rRNA small subunit methyltransferase G J4N43_15605 PF13932 GidA associated domain J4N43_15605 PF01134 Glucose inhibited division protein A J4N43_15610 PF00258 Flavodoxin J4N43_15615 PF12631 MnmE helical domain J4N43_15615 PF10396 GTP-binding protein TrmE N-terminus J4N43_15615 PF01926 50S ribosome-binding GTPase J4N43_15620 PF02096 60Kd inner membrane protein J4N43_15620 PF14849 YidC periplasmic domain J4N43_15625 PF01809 Putative membrane protein insertion efficiency factor J4N43_15630 PF00825 Ribonuclease P J4N43_15635 PF00468 Ribosomal protein L34 J4N43_15640 PF00005 ABC transporter J4N43_15645 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_15650 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N43_15655 PF13614 AAA domain J4N43_15655 PF18607 ParA helix turn helix domain J4N43_15660 PF08775 ParB family J4N43_15660 PF02195 ParB-like nuclease domain J4N43_15665 PF13718 GNAT acetyltransferase 2 J4N43_15665 PF05127 Helicase J4N43_15675 PF00132 Bacterial transferase hexapeptide (six repeats) J4N43_15680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_15680 PF03466 LysR substrate binding domain J4N43_15685 PF03575 Peptidase family S51 J4N43_15690 PF00267 Gram-negative porin J4N43_15695 PF00367 phosphotransferase system, EIIB J4N43_15695 PF02378 Phosphotransferase system, EIIC J4N43_15700 PF01380 SIS domain J4N43_15705 PF01380 SIS domain J4N43_15705 PF01418 Helix-turn-helix domain, rpiR family J4N43_15710 PF00246 Zinc carboxypeptidase J4N43_15715 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N43_15720 PF03358 NADPH-dependent FMN reductase J4N43_15730 PF00664 ABC transporter transmembrane region J4N43_15730 PF00005 ABC transporter J4N43_15730 PF03412 Peptidase C39 family J4N43_15745 PF00529 HlyD membrane-fusion protein of T1SS J4N43_15750 PF02954 Bacterial regulatory protein, Fis family J4N43_15750 PF00072 Response regulator receiver domain J4N43_15750 PF00158 Sigma-54 interaction domain J4N43_15755 PF00512 His Kinase A (phospho-acceptor) domain J4N43_15755 PF02743 Cache domain J4N43_15755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_15760 PF01243 Pyridoxamine 5'-phosphate oxidase J4N43_15760 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region J4N43_15770 PF12833 Helix-turn-helix domain J4N43_15775 PF01619 Proline dehydrogenase J4N43_15775 PF00171 Aldehyde dehydrogenase family J4N43_15775 PF18327 Proline utilization A proline dehydrogenase N-terminal domain J4N43_15775 PF14850 DNA-binding domain of Proline dehydrogenase J4N43_15785 PF00474 Sodium:solute symporter family J4N43_15810 PF01037 Lrp/AsnC ligand binding domain J4N43_15820 PF00664 ABC transporter transmembrane region J4N43_15820 PF00005 ABC transporter J4N43_15830 PF00271 Helicase conserved C-terminal domain J4N43_15830 PF00270 DEAD/DEAH box helicase J4N43_15835 PF03473 MOSC domain J4N43_15835 PF03475 3-alpha domain J4N43_15855 PF08281 Sigma-70, region 4 J4N43_15855 PF04542 Sigma-70 region 2 J4N43_15860 PF01965 DJ-1/PfpI family J4N43_15860 PF12833 Helix-turn-helix domain J4N43_15865 PF03466 LysR substrate binding domain J4N43_15865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_15890 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N43_15890 PF13192 Thioredoxin domain J4N43_15895 PF10417 C-terminal domain of 1-Cys peroxiredoxin J4N43_15895 PF00578 AhpC/TSA family J4N43_15900 PF01047 MarR family J4N43_15905 PF02566 OsmC-like protein J4N43_15940 PF02687 FtsX-like permease family J4N43_15940 PF12704 MacB-like periplasmic core domain J4N43_15945 PF00005 ABC transporter J4N43_15955 PF01136 Peptidase family U32 J4N43_15965 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J4N43_15965 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain J4N43_15970 PF04183 IucA / IucC family J4N43_15970 PF06276 Ferric iron reductase FhuF-like transporter J4N43_15980 PF06276 Ferric iron reductase FhuF-like transporter J4N43_15980 PF04183 IucA / IucC family J4N43_15985 PF02655 ATP-grasp domain J4N43_15985 PF00206 Lyase J4N43_15990 PF07715 TonB-dependent Receptor Plug Domain J4N43_15990 PF00593 TonB dependent receptor J4N43_15995 PF00593 TonB dependent receptor J4N43_15995 PF07715 TonB-dependent Receptor Plug Domain J4N43_15995 PF07660 Secretin and TonB N terminus short domain J4N43_16000 PF01497 Periplasmic binding protein J4N43_16005 PF01032 FecCD transport family J4N43_16010 PF01032 FecCD transport family J4N43_16015 PF00005 ABC transporter J4N43_16020 PF17200 Single Cache domain 2 J4N43_16020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N43_16020 PF00672 HAMP domain J4N43_16025 PF05193 Peptidase M16 inactive domain J4N43_16025 PF00675 Insulinase (Peptidase family M16) J4N43_16035 PF01551 Peptidase family M23 J4N43_16035 PF04225 Opacity-associated protein A LysM-like domain J4N43_16050 PF07690 Major Facilitator Superfamily J4N43_16055 PF02796 Helix-turn-helix domain of resolvase J4N43_16055 PF00239 Resolvase, N terminal domain J4N43_16060 PF00356 Bacterial regulatory proteins, lacI family J4N43_16065 PF00474 Sodium:solute symporter family J4N43_16080 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J4N43_16080 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component J4N43_16090 PF03480 Bacterial extracellular solute-binding protein, family 7 J4N43_16095 PF00356 Bacterial regulatory proteins, lacI family J4N43_16100 PF03328 HpcH/HpaI aldolase/citrate lyase family J4N43_16105 PF00815 Histidinol dehydrogenase J4N43_16120 PF12697 Alpha/beta hydrolase family J4N43_16135 PF07690 Major Facilitator Superfamily J4N43_16140 PF00474 Sodium:solute symporter family J4N43_16145 PF03315 Serine dehydratase beta chain J4N43_16145 PF03313 Serine dehydratase alpha chain J4N43_16150 PF00128 Alpha amylase, catalytic domain J4N43_16150 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J4N43_16155 PF02264 LamB porin J4N43_16170 PF00128 Alpha amylase, catalytic domain J4N43_16170 PF02903 Alpha amylase, N-terminal ig-like domain J4N43_16170 PF16657 Maltogenic Amylase, C-terminal domain J4N43_16175 PF04231 Endonuclease I J4N43_16180 PF11852 Domain of unknown function (DUF3372) J4N43_16180 PF18494 Pullulanase Ins domain J4N43_16180 PF17967 Pullulanase N2 domain J4N43_16180 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J4N43_16180 PF03714 Bacterial pullanase-associated domain J4N43_16195 PF01276 Orn/Lys/Arg decarboxylase, major domain J4N43_16195 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain J4N43_16195 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain J4N43_16200 PF13520 Amino acid permease J4N43_16210 PF08543 Phosphomethylpyrimidine kinase J4N43_16215 PF00375 Sodium:dicarboxylate symporter family J4N43_16220 PF03193 RsgA GTPase J4N43_16225 PF00367 phosphotransferase system, EIIB J4N43_16225 PF02378 Phosphotransferase system, EIIC J4N43_16230 PF02630 SCO1/SenC J4N43_16245 PF00196 Bacterial regulatory proteins, luxR family J4N43_16245 PF17874 MalT-like TPR region J4N43_16250 PF00343 Carbohydrate phosphorylase J4N43_16255 PF02446 4-alpha-glucanotransferase J4N43_16260 PF02806 Alpha amylase, C-terminal all-beta domain J4N43_16260 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J4N43_16260 PF00128 Alpha amylase, catalytic domain J4N43_16265 PF00912 Transglycosylase J4N43_16270 PF00128 Alpha amylase, catalytic domain J4N43_16285 PF07670 Nucleoside recognition J4N43_16290 PF07670 Nucleoside recognition J4N43_16300 PF06803 Protein of unknown function (DUF1232) J4N43_16315 PF00375 Sodium:dicarboxylate symporter family J4N43_16330 PF08803 Putative mono-oxygenase ydhR J4N43_16340 PF13614 AAA domain J4N43_16340 PF13807 G-rich domain on putative tyrosine kinase J4N43_16340 PF02706 Chain length determinant protein J4N43_16345 PF01451 Low molecular weight phosphotyrosine protein phosphatase J4N43_16350 PF02563 Polysaccharide biosynthesis/export protein J4N43_16350 PF18412 Outer-membrane lipoprotein Wza C-terminal domain J4N43_16350 PF10531 SLBB domain J4N43_16355 PF00881 Nitroreductase family J4N43_16360 PF01914 MarC family integral membrane protein J4N43_16365 PF01734 Patatin-like phospholipase J4N43_16375 PF02469 Fasciclin domain J4N43_16380 PF00875 DNA photolyase J4N43_16380 PF03441 FAD binding domain of DNA photolyase J4N43_16390 PF00581 Rhodanese-like domain J4N43_16390 PF17773 UPF0176 acylphosphatase like domain J4N43_16395 PF00561 alpha/beta hydrolase fold J4N43_16400 PF07943 Penicillin-binding protein 5, C-terminal domain J4N43_16400 PF00768 D-alanyl-D-alanine carboxypeptidase J4N43_16405 PF00128 Alpha amylase, catalytic domain J4N43_16405 PF00686 Starch binding domain J4N43_16410 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term J4N43_16410 PF12833 Helix-turn-helix domain J4N43_16415 PF00881 Nitroreductase family J4N43_16425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_16425 PF03466 LysR substrate binding domain J4N43_16430 PF09905 DNA-binding protein VF530 J4N43_16440 PF00970 Oxidoreductase FAD-binding domain J4N43_16440 PF00175 Oxidoreductase NAD-binding domain J4N43_16450 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) J4N43_16455 PF01594 AI-2E family transporter J4N43_16465 PF13533 Biotin-lipoyl like J4N43_16485 PF00892 EamA-like transporter family J4N43_16490 PF03466 LysR substrate binding domain J4N43_16490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_16495 PF07690 Major Facilitator Superfamily J4N43_16505 PF00583 Acetyltransferase (GNAT) family J4N43_16515 PF00486 Transcriptional regulatory protein, C terminal J4N43_16515 PF00072 Response regulator receiver domain J4N43_16520 PF00512 His Kinase A (phospho-acceptor) domain J4N43_16520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_16520 PF00672 HAMP domain J4N43_16535 PF00923 Transaldolase/Fructose-6-phosphate aldolase J4N43_16540 PF04055 Radical SAM superfamily J4N43_16545 PF01228 Glycine radical J4N43_16545 PF02901 Pyruvate formate lyase-like J4N43_16565 PF08000 Bacterial PH domain J4N43_16575 PF13677 Membrane MotB of proton-channel complex MotA/MotB J4N43_16575 PF00691 OmpA family J4N43_16580 PF01618 MotA/TolQ/ExbB proton channel family J4N43_16585 PF04545 Sigma-70, region 4 J4N43_16585 PF04542 Sigma-70 region 2 J4N43_16590 PF03748 Flagellar basal body-associated protein FliL J4N43_16605 PF02561 Flagellar protein FliS J4N43_16610 PF07195 Flagellar hook-associated protein 2 C-terminus J4N43_16610 PF07196 Flagellin hook IN motif J4N43_16610 PF02465 Flagellar hook-associated protein 2 N-terminus J4N43_16620 PF00700 Bacterial flagellin C-terminal helical region J4N43_16620 PF00669 Bacterial flagellin N-terminal helical region J4N43_16630 PF00771 FHIPEP family J4N43_16635 PF01312 FlhB HrpN YscU SpaS Family J4N43_16640 PF01311 Bacterial export proteins, family 1 J4N43_16645 PF01313 Bacterial export proteins, family 3 J4N43_16650 PF00813 FliP family J4N43_16655 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J4N43_16670 PF00072 Response regulator receiver domain J4N43_16670 PF00158 Sigma-54 interaction domain J4N43_16670 PF02954 Bacterial regulatory protein, Fis family J4N43_16675 PF02049 Flagellar hook-basal body complex protein FliE J4N43_16680 PF01514 Secretory protein of YscJ/FliF family J4N43_16680 PF08345 Flagellar M-ring protein C-terminal J4N43_16685 PF14842 FliG N-terminal domain J4N43_16685 PF14841 FliG middle domain J4N43_16685 PF01706 FliG C-terminal domain J4N43_16695 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N43_16695 PF18269 T3SS EscN ATPase C-terminal domain J4N43_16710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_16710 PF03466 LysR substrate binding domain J4N43_16745 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N43_16750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_16750 PF03466 LysR substrate binding domain J4N43_16770 PF00072 Response regulator receiver domain J4N43_16770 PF00486 Transcriptional regulatory protein, C terminal J4N43_16775 PF08448 PAS fold J4N43_16775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_16775 PF00512 His Kinase A (phospho-acceptor) domain J4N43_16775 PF13426 PAS domain J4N43_16775 PF00072 Response regulator receiver domain J4N43_16780 PF00080 Copper/zinc superoxide dismutase (SODC) J4N43_16795 PF13188 PAS domain J4N43_16795 PF03707 Bacterial signalling protein N terminal repeat J4N43_16795 PF00990 Diguanylate cyclase, GGDEF domain J4N43_16795 PF00563 EAL domain J4N43_16800 PF00155 Aminotransferase class I and II J4N43_16805 PF08240 Alcohol dehydrogenase GroES-like domain J4N43_16805 PF00107 Zinc-binding dehydrogenase J4N43_16835 PF00194 Eukaryotic-type carbonic anhydrase J4N43_16840 PF00924 Mechanosensitive ion channel J4N43_16850 PF01070 FMN-dependent dehydrogenase J4N43_16855 PF02652 L-lactate permease J4N43_16860 PF03466 LysR substrate binding domain J4N43_16860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_16865 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain J4N43_16865 PF00326 Prolyl oligopeptidase family J4N43_16870 PF00005 ABC transporter J4N43_16870 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N43_16880 PF05362 Lon protease (S16) C-terminal proteolytic domain J4N43_16880 PF13654 AAA domain J4N43_16885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N43_16885 PF00672 HAMP domain J4N43_16885 PF12729 Four helix bundle sensory module for signal transduction J4N43_16890 PF13609 Gram-negative porin J4N43_16895 PF12945 Flagellar protein YcgR J4N43_16895 PF07238 PilZ domain J4N43_16910 PF00583 Acetyltransferase (GNAT) family J4N43_16915 PF12838 4Fe-4S dicluster domain J4N43_16915 PF12800 4Fe-4S binding domain J4N43_16920 PF12801 4Fe-4S binding domain J4N43_16920 PF13237 4Fe-4S dicluster domain J4N43_16940 PF00005 ABC transporter J4N43_16940 PF12558 ATP-binding cassette cobalt transporter J4N43_16945 PF07155 ECF-type riboflavin transporter, S component J4N43_16950 PF00529 HlyD membrane-fusion protein of T1SS J4N43_16950 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N43_16955 PF11742 Protein of unknown function (DUF3302) J4N43_16960 PF00990 Diguanylate cyclase, GGDEF domain J4N43_16975 PF01048 Phosphorylase superfamily J4N43_16980 PF08349 Protein of unknown function (DUF1722) J4N43_16985 PF13411 MerR HTH family regulatory protein J4N43_16990 PF00875 DNA photolyase J4N43_16990 PF03441 FAD binding domain of DNA photolyase J4N43_16995 PF03734 L,D-transpeptidase catalytic domain J4N43_16995 PF17969 L,D-transpeptidase C-terminal domain J4N43_16995 PF01476 LysM domain J4N43_17005 PF00270 DEAD/DEAH box helicase J4N43_17005 PF00271 Helicase conserved C-terminal domain J4N43_17010 PF00326 Prolyl oligopeptidase family J4N43_17010 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain J4N43_17015 PF07715 TonB-dependent Receptor Plug Domain J4N43_17015 PF00593 TonB dependent receptor J4N43_17035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N43_17035 PF00672 HAMP domain J4N43_17040 PF12849 PBP superfamily domain J4N43_17045 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_17050 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_17055 PF00005 ABC transporter J4N43_17070 PF07584 Aerotolerance regulator N-terminal J4N43_17070 PF13519 von Willebrand factor type A domain J4N43_17075 PF13519 von Willebrand factor type A domain J4N43_17085 PF01882 Protein of unknown function DUF58 J4N43_17090 PF07726 ATPase family associated with various cellular activities (AAA) J4N43_17090 PF17863 AAA lid domain J4N43_17095 PF00672 HAMP domain J4N43_17095 PF02743 Cache domain J4N43_17095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N43_17105 PF00196 Bacterial regulatory proteins, luxR family J4N43_17110 PF00196 Bacterial regulatory proteins, luxR family J4N43_17120 PF00664 ABC transporter transmembrane region J4N43_17120 PF00005 ABC transporter J4N43_17125 PF00529 HlyD membrane-fusion protein of T1SS J4N43_17135 PF01032 FecCD transport family J4N43_17140 PF01497 Periplasmic binding protein J4N43_17145 PF00005 ABC transporter J4N43_17150 PF07715 TonB-dependent Receptor Plug Domain J4N43_17150 PF00593 TonB dependent receptor J4N43_17155 PF00005 ABC transporter J4N43_17155 PF00664 ABC transporter transmembrane region J4N43_17160 PF02702 Osmosensitive K+ channel His kinase sensor domain J4N43_17160 PF13493 Domain of unknown function (DUF4118) J4N43_17160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_17160 PF00512 His Kinase A (phospho-acceptor) domain J4N43_17160 PF02702 Osmosensitive K+ channel His kinase sensor domain J4N43_17160 PF13493 Domain of unknown function (DUF4118) J4N43_17160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_17160 PF00512 His Kinase A (phospho-acceptor) domain J4N43_17165 PF00072 Response regulator receiver domain J4N43_17165 PF00486 Transcriptional regulatory protein, C terminal J4N43_17170 PF02080 TrkA-C domain J4N43_17170 PF02254 TrkA-N domain J4N43_17175 PF02386 Cation transport protein J4N43_17180 PF03466 LysR substrate binding domain J4N43_17180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_17185 PF02028 BCCT, betaine/carnitine/choline family transporter J4N43_17190 PF00355 Rieske [2Fe-2S] domain J4N43_17190 PF00848 Ring hydroxylating alpha subunit (catalytic domain) J4N43_17195 PF00171 Aldehyde dehydrogenase family J4N43_17200 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N43_17200 PF18113 Rubredoxin binding C-terminal domain J4N43_17205 PF01266 FAD dependent oxidoreductase J4N43_17215 PF00127 Copper binding proteins, plastocyanin/azurin family J4N43_17220 PF13419 Haloacid dehalogenase-like hydrolase J4N43_17230 PF00158 Sigma-54 interaction domain J4N43_17230 PF01590 GAF domain J4N43_17235 PF00301 Rubredoxin J4N43_17235 PF00753 Metallo-beta-lactamase superfamily J4N43_17235 PF00258 Flavodoxin J4N43_17240 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N43_17240 PF18113 Rubredoxin binding C-terminal domain J4N43_17250 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J4N43_17250 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J4N43_17255 PF06628 Catalase-related immune-responsive J4N43_17255 PF00199 Catalase J4N43_17260 PF13417 Glutathione S-transferase, N-terminal domain J4N43_17265 PF00107 Zinc-binding dehydrogenase J4N43_17265 PF16884 N-terminal domain of oxidoreductase J4N43_17270 PF16925 Tetracyclin repressor-like, C-terminal domain J4N43_17270 PF00440 Bacterial regulatory proteins, tetR family J4N43_17275 PF04266 ASCH domain J4N43_17305 PF13439 Glycosyltransferase Family 4 J4N43_17305 PF00534 Glycosyl transferases group 1 J4N43_17315 PF02706 Chain length determinant protein J4N43_17315 PF13614 AAA domain J4N43_17315 PF13807 G-rich domain on putative tyrosine kinase J4N43_17330 PF02397 Bacterial sugar transferase J4N43_17340 PF01547 Bacterial extracellular solute-binding protein J4N43_17345 PF14785 Maltose transport system permease protein MalF P2 domain J4N43_17345 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_17350 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_17375 PF00664 ABC transporter transmembrane region J4N43_17375 PF00005 ABC transporter J4N43_17380 PF04954 Siderophore-interacting protein J4N43_17380 PF00664 ABC transporter transmembrane region J4N43_17380 PF00005 ABC transporter J4N43_17380 PF08021 Siderophore-interacting FAD-binding domain J4N43_17385 PF07715 TonB-dependent Receptor Plug Domain J4N43_17385 PF00593 TonB dependent receptor J4N43_17390 PF01497 Periplasmic binding protein J4N43_17395 PF01032 FecCD transport family J4N43_17400 PF01032 FecCD transport family J4N43_17410 PF05661 Protein of unknown function (DUF808) J4N43_17415 PF01979 Amidohydrolase family J4N43_17420 PF01679 Proteolipid membrane potential modulator J4N43_17425 PF03476 MOSC N-terminal beta barrel domain J4N43_17425 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N43_17425 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N43_17425 PF03473 MOSC domain J4N43_17425 PF03473 MOSC domain J4N43_17425 PF03476 MOSC N-terminal beta barrel domain J4N43_17430 PF02540 NAD synthase J4N43_17435 PF01467 Cytidylyltransferase-like J4N43_17465 PF01797 Transposase IS200 like J4N43_17480 PF00005 ABC transporter J4N43_17485 PF01032 FecCD transport family J4N43_17495 PF02472 Biopolymer transport protein ExbD/TolR J4N43_17500 PF01618 MotA/TolQ/ExbB proton channel family J4N43_17505 PF03544 Gram-negative bacterial TonB protein C-terminal J4N43_17510 PF04055 Radical SAM superfamily J4N43_17515 PF06228 Haem utilisation ChuX/HutX J4N43_17520 PF01243 Pyridoxamine 5'-phosphate oxidase J4N43_17530 PF00072 Response regulator receiver domain J4N43_17530 PF01584 CheW-like domain J4N43_17540 PF01554 MatE J4N43_17545 PF00005 ABC transporter J4N43_17545 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N43_17550 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N43_17550 PF00005 ABC transporter J4N43_17555 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N43_17560 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_17565 PF00455 DeoR C terminal sensor domain J4N43_17565 PF08220 DeoR-like helix-turn-helix domain J4N43_17570 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J4N43_17570 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J4N43_17575 PF07005 Sugar-binding N-terminal domain J4N43_17575 PF17042 Nucleotide-binding C-terminal domain J4N43_17580 PF00596 Class II Aldolase and Adducin N-terminal domain J4N43_17585 PF01261 Xylose isomerase-like TIM barrel J4N43_17590 PF01370 NAD dependent epimerase/dehydratase family J4N43_17595 PF02447 GntP family permease J4N43_17600 PF02583 Metal-sensitive transcriptional repressor J4N43_17605 PF03824 High-affinity nickel-transport protein J4N43_17610 PF02743 Cache domain J4N43_17610 PF00672 HAMP domain J4N43_17610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N43_17615 PF03466 LysR substrate binding domain J4N43_17615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_17620 PF17848 Acetyl-coA carboxylase zinc finger domain J4N43_17620 PF01039 Carboxyl transferase domain J4N43_17630 PF04151 Bacterial pre-peptidase C-terminal domain J4N43_17630 PF01752 Collagenase J4N43_17630 PF08453 Peptidase family M9 N-terminal J4N43_17640 PF02627 Carboxymuconolactone decarboxylase family J4N43_17645 PF13411 MerR HTH family regulatory protein J4N43_17650 PF00128 Alpha amylase, catalytic domain J4N43_17665 PF02254 TrkA-N domain J4N43_17665 PF00999 Sodium/hydrogen exchanger family J4N43_17670 PF02525 Flavodoxin-like fold J4N43_17675 PF00582 Universal stress protein family J4N43_17680 PF16326 ABC transporter C-terminal domain J4N43_17680 PF12848 ABC transporter J4N43_17680 PF00005 ABC transporter J4N43_17685 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain J4N43_17685 PF00326 Prolyl oligopeptidase family J4N43_17695 PF13533 Biotin-lipoyl like J4N43_17700 PF00873 AcrB/AcrD/AcrF family J4N43_17705 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J4N43_17715 PF13302 Acetyltransferase (GNAT) domain J4N43_17725 PF00990 Diguanylate cyclase, GGDEF domain J4N43_17725 PF17151 Periplasmic sensor domain J4N43_17740 PF00873 AcrB/AcrD/AcrF family J4N43_17745 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N43_17760 PF12838 4Fe-4S dicluster domain J4N43_17760 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J4N43_17760 PF00384 Molybdopterin oxidoreductase J4N43_17760 PF01568 Molydopterin dinucleotide binding domain J4N43_17760 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region J4N43_17775 PF00005 ABC transporter J4N43_17785 PF01380 SIS domain J4N43_17785 PF02685 Glucokinase J4N43_17785 PF01418 Helix-turn-helix domain, rpiR family J4N43_17795 PF07969 Amidohydrolase family J4N43_17805 PF00474 Sodium:solute symporter family J4N43_17810 PF00294 pfkB family carbohydrate kinase J4N43_17815 PF01081 KDPG and KHG aldolase J4N43_17820 PF02838 Glycosyl hydrolase family 20, domain 2 J4N43_17820 PF00728 Glycosyl hydrolase family 20, catalytic domain J4N43_17825 PF10282 Lactonase, 7-bladed beta-propeller J4N43_17830 PF01042 Endoribonuclease L-PSP J4N43_17835 PF02567 Phenazine biosynthesis-like protein J4N43_17840 PF01161 Phosphatidylethanolamine-binding protein J4N43_17850 PF01758 Sodium Bile acid symporter family J4N43_17865 PF01638 HxlR-like helix-turn-helix J4N43_17885 PF03466 LysR substrate binding domain J4N43_17885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_17890 PF00248 Aldo/keto reductase family J4N43_17915 PF03222 Tryptophan/tyrosine permease family J4N43_17925 PF00672 HAMP domain J4N43_17925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N43_17925 PF02743 Cache domain J4N43_17930 PF07670 Nucleoside recognition J4N43_17950 PF01551 Peptidase family M23 J4N43_17950 PF08525 Opacity-associated protein A N-terminal motif J4N43_17950 PF01476 LysM domain J4N43_17955 PF08447 PAS fold J4N43_17955 PF00990 Diguanylate cyclase, GGDEF domain J4N43_17955 PF00563 EAL domain J4N43_17955 PF08448 PAS fold J4N43_17960 PF03466 LysR substrate binding domain J4N43_17960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_17965 PF07690 Major Facilitator Superfamily J4N43_17975 PF00462 Glutaredoxin J4N43_17985 PF00267 Gram-negative porin J4N43_17995 PF01557 Fumarylacetoacetate (FAA) hydrolase family J4N43_18015 PF01810 LysE type translocator J4N43_18025 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J4N43_18025 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J4N43_18025 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J4N43_18025 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J4N43_18030 PF00116 Cytochrome C oxidase subunit II, periplasmic domain J4N43_18030 PF02790 Cytochrome C oxidase subunit II, transmembrane domain J4N43_18035 PF00115 Cytochrome C and Quinol oxidase polypeptide I J4N43_18040 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 J4N43_18045 PF00510 Cytochrome c oxidase subunit III J4N43_18065 PF02628 Cytochrome oxidase assembly protein J4N43_18070 PF01040 UbiA prenyltransferase family J4N43_18075 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J4N43_18075 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N43_18085 PF05736 OprF membrane domain J4N43_18085 PF00691 OmpA family J4N43_18105 PF00313 'Cold-shock' DNA-binding domain J4N43_18110 PF03889 Alternative ribosome-rescue factor A J4N43_18115 PF00990 Diguanylate cyclase, GGDEF domain J4N43_18120 PF00140 Sigma-70 factor, region 1.2 J4N43_18120 PF04542 Sigma-70 region 2 J4N43_18120 PF04539 Sigma-70 region 3 J4N43_18120 PF04545 Sigma-70, region 4 J4N43_18130 PF00005 ABC transporter J4N43_18130 PF00664 ABC transporter transmembrane region J4N43_18135 PF00005 ABC transporter J4N43_18135 PF00664 ABC transporter transmembrane region J4N43_18140 PF02321 Outer membrane efflux protein J4N43_18145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_18145 PF00072 Response regulator receiver domain J4N43_18150 PF13533 Biotin-lipoyl like J4N43_18170 PF17200 Single Cache domain 2 J4N43_18170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N43_18170 PF00672 HAMP domain J4N43_18175 PF00210 Ferritin-like domain J4N43_18185 PF07995 Glucose / Sorbosone dehydrogenase J4N43_18190 PF00465 Iron-containing alcohol dehydrogenase J4N43_18205 PF00892 EamA-like transporter family J4N43_18215 PF03466 LysR substrate binding domain J4N43_18215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_18225 PF13193 AMP-binding enzyme C-terminal domain J4N43_18225 PF00501 AMP-binding enzyme J4N43_18230 PF00351 Biopterin-dependent aromatic amino acid hydroxylase J4N43_18235 PF01329 Pterin 4 alpha carbinolamine dehydratase J4N43_18255 PF12843 Putative quorum-sensing-regulated virulence factor J4N43_18265 PF01810 LysE type translocator J4N43_18305 PF00270 DEAD/DEAH box helicase J4N43_18305 PF00271 Helicase conserved C-terminal domain J4N43_18310 PF09905 DNA-binding protein VF530 J4N43_18320 PF00291 Pyridoxal-phosphate dependent enzyme J4N43_18330 PF00313 'Cold-shock' DNA-binding domain J4N43_18340 PF01470 Pyroglutamyl peptidase J4N43_18350 PF02492 CobW/HypB/UreG, nucleotide-binding domain J4N43_18350 PF07683 Cobalamin synthesis protein cobW C-terminal domain J4N43_18355 PF00270 DEAD/DEAH box helicase J4N43_18355 PF00271 Helicase conserved C-terminal domain J4N43_18375 PF00563 EAL domain J4N43_18375 PF12792 CSS motif domain associated with EAL J4N43_18380 PF00005 ABC transporter J4N43_18385 PF12729 Four helix bundle sensory module for signal transduction J4N43_18385 PF00672 HAMP domain J4N43_18385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N43_18395 PF01575 MaoC like domain J4N43_18400 PF12849 PBP superfamily domain J4N43_18410 PF12833 Helix-turn-helix domain J4N43_18415 PF00773 RNB domain J4N43_18415 PF08206 Ribonuclease B OB domain J4N43_18415 PF00575 S1 RNA binding domain J4N43_18420 PF03880 DbpA RNA binding domain J4N43_18420 PF00271 Helicase conserved C-terminal domain J4N43_18420 PF00270 DEAD/DEAH box helicase J4N43_18430 PF00871 Acetokinase family J4N43_18435 PF03466 LysR substrate binding domain J4N43_18435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_18440 PF12146 Serine aminopeptidase, S33 J4N43_18445 PF12146 Serine aminopeptidase, S33 J4N43_18475 PF01475 Ferric uptake regulator family J4N43_18480 PF01979 Amidohydrolase family J4N43_18485 PF00132 Bacterial transferase hexapeptide (six repeats) J4N43_18490 PF02492 CobW/HypB/UreG, nucleotide-binding domain J4N43_18490 PF07683 Cobalamin synthesis protein cobW C-terminal domain J4N43_18500 PF01476 LysM domain J4N43_18500 PF08525 Opacity-associated protein A N-terminal motif J4N43_18500 PF01551 Peptidase family M23 J4N43_18505 PF02492 CobW/HypB/UreG, nucleotide-binding domain J4N43_18505 PF07683 Cobalamin synthesis protein cobW C-terminal domain J4N43_18510 PF02492 CobW/HypB/UreG, nucleotide-binding domain J4N43_18510 PF07683 Cobalamin synthesis protein cobW C-terminal domain J4N43_18515 PF01258 Prokaryotic dksA/traR C4-type zinc finger J4N43_18520 PF01914 MarC family integral membrane protein J4N43_18530 PF13426 PAS domain J4N43_18530 PF08447 PAS fold J4N43_18530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N43_18540 PF00682 HMGL-like J4N43_18545 PF00378 Enoyl-CoA hydratase/isomerase J4N43_18550 PF01039 Carboxyl transferase domain J4N43_18555 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J4N43_18555 PF02770 Acyl-CoA dehydrogenase, middle domain J4N43_18555 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J4N43_18560 PF09278 MerR, DNA binding J4N43_18560 PF00376 MerR family regulatory protein J4N43_18565 PF02803 Thiolase, C-terminal domain J4N43_18565 PF00108 Thiolase, N-terminal domain J4N43_18570 PF00171 Aldehyde dehydrogenase family J4N43_18575 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J4N43_18575 PF02770 Acyl-CoA dehydrogenase, middle domain J4N43_18575 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J4N43_18580 PF00378 Enoyl-CoA hydratase/isomerase J4N43_18585 PF00378 Enoyl-CoA hydratase/isomerase J4N43_18590 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J4N43_18590 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J4N43_18600 PF00116 Cytochrome C oxidase subunit II, periplasmic domain J4N43_18600 PF06481 COX Aromatic Rich Motif J4N43_18605 PF00115 Cytochrome C and Quinol oxidase polypeptide I J4N43_18610 PF00510 Cytochrome c oxidase subunit III J4N43_18620 PF01040 UbiA prenyltransferase family J4N43_18625 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N43_18625 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J4N43_18640 PF00171 Aldehyde dehydrogenase family J4N43_18650 PF02028 BCCT, betaine/carnitine/choline family transporter J4N43_18680 PF00005 ABC transporter J4N43_18685 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N43_18690 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_18695 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_18705 PF03466 LysR substrate binding domain J4N43_18705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_18710 PF13417 Glutathione S-transferase, N-terminal domain J4N43_18710 PF00043 Glutathione S-transferase, C-terminal domain J4N43_18720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_18720 PF03466 LysR substrate binding domain J4N43_18730 PF00766 Electron transfer flavoprotein FAD-binding domain J4N43_18730 PF01012 Electron transfer flavoprotein domain J4N43_18735 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J4N43_18735 PF02817 e3 binding domain J4N43_18735 PF00364 Biotin-requiring enzyme J4N43_18740 PF02780 Transketolase, C-terminal domain J4N43_18740 PF02779 Transketolase, pyrimidine binding domain J4N43_18745 PF00676 Dehydrogenase E1 component J4N43_18765 PF00474 Sodium:solute symporter family J4N43_18770 PF00929 Exonuclease J4N43_18770 PF02811 PHP domain J4N43_18770 PF11490 DNA polymerase III polC-type N-terminus II J4N43_18770 PF14579 Helix-hairpin-helix motif J4N43_18770 PF07733 Bacterial DNA polymerase III alpha NTPase domain J4N43_18770 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J4N43_18775 PF00571 CBS domain J4N43_18780 PF07729 FCD domain J4N43_18780 PF00392 Bacterial regulatory proteins, gntR family J4N43_18785 PF00392 Bacterial regulatory proteins, gntR family J4N43_18785 PF07729 FCD domain J4N43_18795 PF08787 Alginate lyase J4N43_18810 PF08787 Alginate lyase J4N43_18815 PF08787 Alginate lyase J4N43_18820 PF07940 Heparinase II/III-like protein J4N43_18820 PF05426 Alginate lyase J4N43_18825 PF05426 Alginate lyase J4N43_18825 PF07940 Heparinase II/III-like protein J4N43_18830 PF07883 Cupin domain J4N43_18835 PF00294 pfkB family carbohydrate kinase J4N43_18840 PF01081 KDPG and KHG aldolase J4N43_18850 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J4N43_18850 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain J4N43_18860 PF04314 Copper chaperone PCu(A)C J4N43_18895 PF00072 Response regulator receiver domain J4N43_18895 PF00486 Transcriptional regulatory protein, C terminal J4N43_18915 PF01483 Proprotein convertase P-domain J4N43_18915 PF00082 Subtilase family J4N43_18925 PF00990 Diguanylate cyclase, GGDEF domain J4N43_18930 PF03222 Tryptophan/tyrosine permease family J4N43_18940 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J4N43_18940 PF00384 Molybdopterin oxidoreductase J4N43_18940 PF01568 Molydopterin dinucleotide binding domain J4N43_18945 PF14824 Sirohaem biosynthesis protein central J4N43_18945 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N43_18945 PF10414 Sirohaem synthase dimerisation region J4N43_18950 PF02885 Glycosyl transferase family, helical bundle domain J4N43_18950 PF00591 Glycosyl transferase family, a/b domain J4N43_18955 PF01738 Dienelactone hydrolase family J4N43_18960 PF03861 ANTAR domain J4N43_18960 PF00072 Response regulator receiver domain J4N43_18970 PF00005 ABC transporter J4N43_18975 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_18980 PF00005 ABC transporter J4N43_19015 PF00072 Response regulator receiver domain J4N43_19015 PF00211 Adenylate and Guanylate cyclase catalytic domain J4N43_19035 PF03793 PASTA domain J4N43_19035 PF00069 Protein kinase domain J4N43_19050 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE J4N43_19055 PF13677 Membrane MotB of proton-channel complex MotA/MotB J4N43_19055 PF00691 OmpA family J4N43_19060 PF14331 ImcF-related N-terminal domain J4N43_19060 PF06761 Intracellular multiplication and human macrophage-killing J4N43_19060 PF06744 Type VI secretion protein IcmF C-terminal J4N43_19080 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 J4N43_19085 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath J4N43_19090 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath J4N43_19105 PF05947 Type VI secretion system, TssF J4N43_19115 PF00004 ATPase family associated with various cellular activities (AAA) J4N43_19115 PF17871 AAA lid domain J4N43_19115 PF07724 AAA domain (Cdc48 subfamily) J4N43_19115 PF10431 C-terminal, D2-small domain, of ClpB protein J4N43_19125 PF04717 Type VI secretion system, phage-baseplate injector J4N43_19125 PF06715 Gp5 C-terminal repeat (3 copies) J4N43_19140 PF00149 Calcineurin-like phosphoesterase J4N43_19140 PF12320 Type 5 capsule protein repressor C-terminal domain J4N43_19145 PF13476 AAA domain J4N43_19155 PF08212 Lipocalin-like domain J4N43_19165 PF03606 C4-dicarboxylate anaerobic carrier J4N43_19175 PF01212 Beta-eliminating lyase J4N43_19185 PF07728 AAA domain (dynein-related subfamily) J4N43_19185 PF17868 AAA lid domain J4N43_19185 PF12592 Protein of unknown function (DUF3763) J4N43_19190 PF05762 VWA domain containing CoxE-like protein J4N43_19205 PF03466 LysR substrate binding domain J4N43_19205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_19210 PF09330 D-lactate dehydrogenase, membrane binding J4N43_19210 PF01565 FAD binding domain J4N43_19225 PF01168 Alanine racemase, N-terminal domain J4N43_19225 PF00842 Alanine racemase, C-terminal domain J4N43_19230 PF00672 HAMP domain J4N43_19230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N43_19245 PF00128 Alpha amylase, catalytic domain J4N43_19245 PF09154 Domain of unknown function (DUF1939) J4N43_19275 PF00296 Luciferase-like monooxygenase J4N43_19280 PF00563 EAL domain J4N43_19280 PF00990 Diguanylate cyclase, GGDEF domain J4N43_19280 PF03707 Bacterial signalling protein N terminal repeat J4N43_19290 PF00563 EAL domain J4N43_19290 PF00990 Diguanylate cyclase, GGDEF domain J4N43_19290 PF03707 Bacterial signalling protein N terminal repeat J4N43_19295 PF01272 Transcription elongation factor, GreA/GreB, C-term J4N43_19295 PF14760 Rnk N-terminus J4N43_19300 PF04324 BFD-like [2Fe-2S] binding domain J4N43_19300 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J4N43_19300 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain J4N43_19300 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N43_19300 PF18267 Rubredoxin NAD+ reductase C-terminal domain J4N43_19305 PF13806 Rieske-like [2Fe-2S] domain J4N43_19310 PF01226 Formate/nitrite transporter J4N43_19315 PF10414 Sirohaem synthase dimerisation region J4N43_19315 PF14824 Sirohaem biosynthesis protein central J4N43_19315 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N43_19330 PF03605 Anaerobic c4-dicarboxylate membrane transporter J4N43_19340 PF07715 TonB-dependent Receptor Plug Domain J4N43_19340 PF00593 TonB dependent receptor J4N43_19350 PF13302 Acetyltransferase (GNAT) domain J4N43_19355 PF11756 Nitrous oxide-stimulated promoter J4N43_19360 PF07690 Major Facilitator Superfamily J4N43_19365 PF00085 Thioredoxin J4N43_19370 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J4N43_19370 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J4N43_19390 PF01238 Phosphomannose isomerase type I J4N43_19395 PF07690 Major Facilitator Superfamily J4N43_19400 PF05231 MASE1 J4N43_19400 PF07730 Histidine kinase J4N43_19400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_19405 PF00196 Bacterial regulatory proteins, luxR family J4N43_19405 PF00072 Response regulator receiver domain J4N43_19410 PF07690 Major Facilitator Superfamily J4N43_19415 PF02634 FdhD/NarQ family J4N43_19420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_19420 PF03466 LysR substrate binding domain J4N43_19425 PF00384 Molybdopterin oxidoreductase J4N43_19440 PF02567 Phenazine biosynthesis-like protein J4N43_19445 PF01177 Asp/Glu/Hydantoin racemase J4N43_19450 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N43_19450 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4N43_19460 PF04143 Sulphur transport J4N43_19475 PF13597 Anaerobic ribonucleoside-triphosphate reductase J4N43_19475 PF03477 ATP cone domain J4N43_19485 PF01554 MatE J4N43_19490 PF12833 Helix-turn-helix domain J4N43_19490 PF12852 Cupin J4N43_19495 PF00155 Aminotransferase class I and II J4N43_19500 PF18030 RimK PreATP-grasp domain J4N43_19500 PF08443 RimK-like ATP-grasp domain J4N43_19510 PF04076 Bacterial OB fold (BOF) protein J4N43_19515 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J4N43_19515 PF07685 CobB/CobQ-like glutamine amidotransferase domain J4N43_19525 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_19530 PF00005 ABC transporter J4N43_19530 PF03459 TOBE domain J4N43_19540 PF00563 EAL domain J4N43_19540 PF01590 GAF domain J4N43_19540 PF00990 Diguanylate cyclase, GGDEF domain J4N43_19540 PF00360 Phytochrome region J4N43_19545 PF00990 Diguanylate cyclase, GGDEF domain J4N43_19560 PF01262 Alanine dehydrogenase/PNT, C-terminal domain J4N43_19560 PF05222 Alanine dehydrogenase/PNT, N-terminal domain J4N43_19560 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch J4N43_19565 PF02233 NAD(P) transhydrogenase beta subunit J4N43_19575 PF00486 Transcriptional regulatory protein, C terminal J4N43_19575 PF00072 Response regulator receiver domain J4N43_19590 PF03701 Uncharacterised protein family (UPF0181) J4N43_19605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_19605 PF03466 LysR substrate binding domain J4N43_19655 PF01253 Translation initiation factor SUI1 J4N43_19665 PF07478 D-ala D-ala ligase C-terminus J4N43_19665 PF01820 D-ala D-ala ligase N-terminus J4N43_19670 PF05036 Sporulation related domain J4N43_19675 PF00583 Acetyltransferase (GNAT) family J4N43_19675 PF13607 Succinyl-CoA ligase like flavodoxin domain J4N43_19675 PF13380 CoA binding domain J4N43_19680 PF03466 LysR substrate binding domain J4N43_19680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_19685 PF07715 TonB-dependent Receptor Plug Domain J4N43_19685 PF00593 TonB dependent receptor J4N43_19685 PF04886 PT repeat J4N43_19690 PF16363 GDP-mannose 4,6 dehydratase J4N43_19695 PF00990 Diguanylate cyclase, GGDEF domain J4N43_19695 PF05231 MASE1 J4N43_19695 PF13426 PAS domain J4N43_19695 PF08448 PAS fold J4N43_19695 PF00563 EAL domain J4N43_19695 PF08447 PAS fold J4N43_19700 PF03746 LamB/YcsF family J4N43_19705 PF02682 Carboxyltransferase domain, subdomain C and D J4N43_19710 PF02626 Carboxyltransferase domain, subdomain A and B J4N43_19725 PF00005 ABC transporter J4N43_19730 PF13472 GDSL-like Lipase/Acylhydrolase family J4N43_19735 PF12241 Trans-2-enoyl-CoA reductase catalytic region J4N43_19735 PF07055 Enoyl reductase FAD binding domain J4N43_19735 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase J4N43_19750 PF00684 DnaJ central domain J4N43_19750 PF01556 DnaJ C terminal domain J4N43_19750 PF00226 DnaJ domain J4N43_19775 PF12793 Sugar transport-related sRNA regulator N-term J4N43_19775 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N43_19785 PF03061 Thioesterase superfamily J4N43_19800 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J4N43_19805 PF12262 Bacterial virulence factor lipase N-terminal J4N43_19825 PF03741 Integral membrane protein TerC family J4N43_19830 PF00149 Calcineurin-like phosphoesterase J4N43_19830 PF02872 5'-nucleotidase, C-terminal domain J4N43_19835 PF11398 Protein of unknown function (DUF2813) J4N43_19840 PF06496 Protein of unknown function (DUF1097) J4N43_19845 PF03466 LysR substrate binding domain J4N43_19845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_19850 PF01226 Formate/nitrite transporter J4N43_19855 PF04264 YceI-like domain J4N43_19860 PF01292 Prokaryotic cytochrome b561 J4N43_19880 PF00270 DEAD/DEAH box helicase J4N43_19880 PF00271 Helicase conserved C-terminal domain J4N43_19885 PF04336 Acyl carrier protein phosphodiesterase J4N43_19895 PF00672 HAMP domain J4N43_19895 PF12729 Four helix bundle sensory module for signal transduction J4N43_19895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N43_19900 PF13419 Haloacid dehalogenase-like hydrolase J4N43_19915 PF00294 pfkB family carbohydrate kinase J4N43_19920 PF01268 Formate--tetrahydrofolate ligase J4N43_19925 PF00483 Nucleotidyl transferase J4N43_19930 PF01797 Transposase IS200 like J4N43_19935 PF06483 Chitinase C J4N43_19935 PF00704 Glycosyl hydrolases family 18 J4N43_19940 PF06719 AraC-type transcriptional regulator N-terminus J4N43_19940 PF12833 Helix-turn-helix domain J4N43_19945 PF00465 Iron-containing alcohol dehydrogenase J4N43_19955 PF00005 ABC transporter J4N43_19960 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_19965 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N43_19970 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_19975 PF00989 PAS fold J4N43_19975 PF00990 Diguanylate cyclase, GGDEF domain J4N43_19975 PF01590 GAF domain J4N43_19975 PF00563 EAL domain J4N43_19990 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family J4N43_19990 PF00356 Bacterial regulatory proteins, lacI family J4N43_19995 PF00381 PTS HPr component phosphorylation site J4N43_19995 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N43_20000 PF00294 pfkB family carbohydrate kinase J4N43_20005 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N43_20005 PF02378 Phosphotransferase system, EIIC J4N43_20015 PF00873 AcrB/AcrD/AcrF family J4N43_20035 PF08669 Glycine cleavage T-protein C-terminal barrel domain J4N43_20035 PF01571 Aminomethyltransferase folate-binding domain J4N43_20045 PF00464 Serine hydroxymethyltransferase J4N43_20050 PF01597 Glycine cleavage H-protein J4N43_20055 PF02347 Glycine cleavage system P-protein J4N43_20060 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N43_20065 PF00753 Metallo-beta-lactamase superfamily J4N43_20070 PF03466 LysR substrate binding domain J4N43_20070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_20075 PF00892 EamA-like transporter family J4N43_20080 PF02627 Carboxymuconolactone decarboxylase family J4N43_20085 PF12833 Helix-turn-helix domain J4N43_20110 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J4N43_20110 PF00929 Exonuclease J4N43_20110 PF02811 PHP domain J4N43_20110 PF11490 DNA polymerase III polC-type N-terminus II J4N43_20110 PF07733 Bacterial DNA polymerase III alpha NTPase domain J4N43_20110 PF14579 Helix-hairpin-helix motif J4N43_20115 PF00005 ABC transporter J4N43_20115 PF00664 ABC transporter transmembrane region J4N43_20135 PF02253 Phospholipase A1 J4N43_20145 PF00376 MerR family regulatory protein J4N43_20145 PF09278 MerR, DNA binding J4N43_20150 PF01327 Polypeptide deformylase J4N43_20185 PF03448 MgtE intracellular N domain J4N43_20185 PF01769 Divalent cation transporter J4N43_20185 PF00571 CBS domain J4N43_20205 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N43_20210 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J4N43_20220 PF01757 Acyltransferase family J4N43_20230 PF09722 Protein of unknown function (DUF2384) J4N43_20235 PF00141 Peroxidase J4N43_20240 PF13187 4Fe-4S dicluster domain J4N43_20240 PF01645 Conserved region in glutamate synthase J4N43_20255 PF00171 Aldehyde dehydrogenase family J4N43_20270 PF00892 EamA-like transporter family J4N43_20275 PF00893 Small Multidrug Resistance protein J4N43_20295 PF00892 EamA-like transporter family J4N43_20305 PF07963 Prokaryotic N-terminal methylation motif J4N43_20305 PF08334 Type II secretion system (T2SS), protein G J4N43_20310 PF00072 Response regulator receiver domain J4N43_20310 PF01584 CheW-like domain J4N43_20315 PF00196 Bacterial regulatory proteins, luxR family J4N43_20315 PF00072 Response regulator receiver domain J4N43_20325 PF00990 Diguanylate cyclase, GGDEF domain J4N43_20330 PF00196 Bacterial regulatory proteins, luxR family J4N43_20330 PF00072 Response regulator receiver domain J4N43_20335 PF00563 EAL domain J4N43_20335 PF13188 PAS domain J4N43_20335 PF00990 Diguanylate cyclase, GGDEF domain J4N43_20335 PF03707 Bacterial signalling protein N terminal repeat J4N43_20340 PF00512 His Kinase A (phospho-acceptor) domain J4N43_20340 PF09456 RcsC Alpha-Beta-Loop (ABL) J4N43_20340 PF00072 Response regulator receiver domain J4N43_20340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_20345 PF01926 50S ribosome-binding GTPase J4N43_20350 PF00155 Aminotransferase class I and II J4N43_20355 PF00072 Response regulator receiver domain J4N43_20355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_20365 PF00814 Glycoprotease family J4N43_20365 PF00583 Acetyltransferase (GNAT) family J4N43_20375 PF03606 C4-dicarboxylate anaerobic carrier J4N43_20390 PF18081 Fanconi anemia-associated nuclease SAP domain J4N43_20390 PF08774 VRR-NUC domain J4N43_20400 PF04076 Bacterial OB fold (BOF) protein J4N43_20405 PF00781 Diacylglycerol kinase catalytic domain J4N43_20410 PF03466 LysR substrate binding domain J4N43_20410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_20415 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J4N43_20430 PF00092 von Willebrand factor type A domain J4N43_20445 PF17863 AAA lid domain J4N43_20445 PF07726 ATPase family associated with various cellular activities (AAA) J4N43_20450 PF13186 Iron-sulfur cluster-binding domain J4N43_20450 PF04055 Radical SAM superfamily J4N43_20455 PF16385 Domain of unknown function J4N43_20455 PF00884 Sulfatase J4N43_20460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_20460 PF03466 LysR substrate binding domain J4N43_20465 PF00884 Sulfatase J4N43_20470 PF00072 Response regulator receiver domain J4N43_20470 PF00486 Transcriptional regulatory protein, C terminal J4N43_20485 PF00512 His Kinase A (phospho-acceptor) domain J4N43_20485 PF00072 Response regulator receiver domain J4N43_20485 PF00672 HAMP domain J4N43_20485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_20485 PF01627 Hpt domain J4N43_20490 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family J4N43_20495 PF02142 MGS-like domain J4N43_20500 PF00580 UvrD/REP helicase N-terminal domain J4N43_20500 PF12462 DNA helicase IV / RNA helicase N terminal J4N43_20500 PF13361 UvrD-like helicase C-terminal domain J4N43_20505 PF12805 FUSC-like inner membrane protein yccS J4N43_20545 PF00593 TonB dependent receptor J4N43_20545 PF07715 TonB-dependent Receptor Plug Domain J4N43_20555 PF13411 MerR HTH family regulatory protein J4N43_20560 PF00005 ABC transporter J4N43_20565 PF01032 FecCD transport family J4N43_20570 PF01032 FecCD transport family J4N43_20575 PF01497 Periplasmic binding protein J4N43_20585 PF01797 Transposase IS200 like J4N43_20590 PF01048 Phosphorylase superfamily J4N43_20595 PF04973 Nicotinamide mononucleotide transporter J4N43_20600 PF00356 Bacterial regulatory proteins, lacI family J4N43_20605 PF00294 pfkB family carbohydrate kinase J4N43_20610 PF13407 Periplasmic binding protein domain J4N43_20615 PF02653 Branched-chain amino acid transport system / permease component J4N43_20620 PF00005 ABC transporter J4N43_20625 PF05025 RbsD / FucU transport protein family J4N43_20630 PF00563 EAL domain J4N43_20630 PF00990 Diguanylate cyclase, GGDEF domain J4N43_20675 PF04116 Fatty acid hydroxylase superfamily J4N43_20685 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase J4N43_20685 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain J4N43_20695 PF00512 His Kinase A (phospho-acceptor) domain J4N43_20695 PF00072 Response regulator receiver domain J4N43_20695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_20695 PF09308 LuxQ, periplasmic J4N43_20700 PF00034 Cytochrome c J4N43_20700 PF03150 Di-haem cytochrome c peroxidase J4N43_20710 PF16200 C-terminal region of band_7 J4N43_20710 PF01145 SPFH domain / Band 7 family J4N43_20720 PF00881 Nitroreductase family J4N43_20725 PF00005 ABC transporter J4N43_20725 PF00571 CBS domain J4N43_20730 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_20735 PF04069 Substrate binding domain of ABC-type glycine betaine transport system J4N43_20740 PF00732 GMC oxidoreductase J4N43_20740 PF05199 GMC oxidoreductase J4N43_20745 PF00171 Aldehyde dehydrogenase family J4N43_20750 PF13977 BetI-type transcriptional repressor, C-terminal J4N43_20750 PF00440 Bacterial regulatory proteins, tetR family J4N43_20755 PF00990 Diguanylate cyclase, GGDEF domain J4N43_20755 PF00072 Response regulator receiver domain J4N43_20765 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J4N43_20765 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J4N43_20775 PF00378 Enoyl-CoA hydratase/isomerase J4N43_20780 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J4N43_20780 PF02770 Acyl-CoA dehydrogenase, middle domain J4N43_20780 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J4N43_20785 PF00171 Aldehyde dehydrogenase family J4N43_20790 PF00108 Thiolase, N-terminal domain J4N43_20790 PF02803 Thiolase, C-terminal domain J4N43_20795 PF09278 MerR, DNA binding J4N43_20795 PF00376 MerR family regulatory protein J4N43_20800 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J4N43_20800 PF02770 Acyl-CoA dehydrogenase, middle domain J4N43_20800 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J4N43_20805 PF01039 Carboxyl transferase domain J4N43_20810 PF00378 Enoyl-CoA hydratase/isomerase J4N43_20815 PF18140 Propionyl-coenzyme A carboxylase BT domain J4N43_20815 PF00364 Biotin-requiring enzyme J4N43_20815 PF02785 Biotin carboxylase C-terminal domain J4N43_20815 PF00289 Biotin carboxylase, N-terminal domain J4N43_20815 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J4N43_20820 PF00682 HMGL-like J4N43_20830 PF12794 Mechanosensitive ion channel inner membrane domain 1 J4N43_20830 PF00924 Mechanosensitive ion channel J4N43_20830 PF12795 Mechanosensitive ion channel porin domain J4N43_20835 PF12464 Maltose acetyltransferase J4N43_20835 PF14602 Hexapeptide repeat of succinyl-transferase J4N43_20840 PF00392 Bacterial regulatory proteins, gntR family J4N43_20840 PF00155 Aminotransferase class I and II J4N43_20845 PF01654 Cytochrome bd terminal oxidase subunit I J4N43_20850 PF02322 Cytochrome bd terminal oxidase subunit II J4N43_20870 PF03466 LysR substrate binding domain J4N43_20870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_20875 PF03306 Alpha-acetolactate decarboxylase J4N43_20880 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J4N43_20880 PF00205 Thiamine pyrophosphate enzyme, central domain J4N43_20880 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J4N43_20885 PF00106 short chain dehydrogenase J4N43_20890 PF05724 Thiopurine S-methyltransferase (TPMT) J4N43_20895 PF00501 AMP-binding enzyme J4N43_20895 PF14535 AMP-binding enzyme C-terminal domain J4N43_20900 PF00005 ABC transporter J4N43_20920 PF00501 AMP-binding enzyme J4N43_20925 PF00005 ABC transporter J4N43_20925 PF12399 Branched-chain amino acid ATP-binding cassette transporter J4N43_20935 PF01012 Electron transfer flavoprotein domain J4N43_20940 PF00766 Electron transfer flavoprotein FAD-binding domain J4N43_20940 PF01012 Electron transfer flavoprotein domain J4N43_20945 PF13193 AMP-binding enzyme C-terminal domain J4N43_20945 PF00501 AMP-binding enzyme J4N43_20950 PF00367 phosphotransferase system, EIIB J4N43_20950 PF02378 Phosphotransferase system, EIIC J4N43_20955 PF02056 Family 4 glycosyl hydrolase J4N43_20955 PF11975 Family 4 glycosyl hydrolase C-terminal domain J4N43_20960 PF00392 Bacterial regulatory proteins, gntR family J4N43_20960 PF07702 UTRA domain J4N43_20965 PF03334 Na+/H+ antiporter subunit J4N43_20970 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) J4N43_20975 PF01899 Na+/H+ ion antiporter subunit J4N43_20980 PF00361 Proton-conducting membrane transporter J4N43_20985 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L J4N43_20990 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter J4N43_20990 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J4N43_20990 PF00361 Proton-conducting membrane transporter J4N43_20990 PF13244 Domain of unknown function (DUF4040) J4N43_21000 PF00582 Universal stress protein family J4N43_21005 PF00106 short chain dehydrogenase J4N43_21010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_21010 PF03466 LysR substrate binding domain J4N43_21020 PF07690 Major Facilitator Superfamily J4N43_21025 PF01797 Transposase IS200 like J4N43_21060 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE J4N43_21090 PF01037 Lrp/AsnC ligand binding domain J4N43_21100 PF05947 Type VI secretion system, TssF J4N43_21110 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath J4N43_21125 PF00069 Protein kinase domain J4N43_21150 PF04717 Type VI secretion system, phage-baseplate injector J4N43_21155 PF05638 Type VI secretion system effector, Hcp J4N43_21160 PF17871 AAA lid domain J4N43_21160 PF07724 AAA domain (Cdc48 subfamily) J4N43_21160 PF10431 C-terminal, D2-small domain, of ClpB protein J4N43_21160 PF00004 ATPase family associated with various cellular activities (AAA) J4N43_21165 PF00158 Sigma-54 interaction domain J4N43_21165 PF00072 Response regulator receiver domain J4N43_21165 PF02954 Bacterial regulatory protein, Fis family J4N43_21190 PF08525 Opacity-associated protein A N-terminal motif J4N43_21190 PF01551 Peptidase family M23 J4N43_21190 PF01476 LysM domain J4N43_21205 PF01699 Sodium/calcium exchanger protein J4N43_21220 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N43_21230 PF12833 Helix-turn-helix domain J4N43_21240 PF01238 Phosphomannose isomerase type I J4N43_21255 PF17678 Glycosyl hydrolase family 92 N-terminal domain J4N43_21255 PF07971 Glycosyl hydrolase family 92 J4N43_21260 PF07971 Glycosyl hydrolase family 92 J4N43_21260 PF17678 Glycosyl hydrolase family 92 N-terminal domain J4N43_21270 PF17678 Glycosyl hydrolase family 92 N-terminal domain J4N43_21270 PF07971 Glycosyl hydrolase family 92 J4N43_21290 PF00478 IMP dehydrogenase / GMP reductase domain J4N43_21295 PF03853 YjeF-related protein N-terminus J4N43_21295 PF01256 Carbohydrate kinase J4N43_21305 PF00072 Response regulator receiver domain J4N43_21310 PF00248 Aldo/keto reductase family J4N43_21325 PF00654 Voltage gated chloride channel J4N43_21335 PF01227 GTP cyclohydrolase I J4N43_21340 PF03454 MoeA C-terminal region (domain IV) J4N43_21340 PF03453 MoeA N-terminal region (domain I and II) J4N43_21340 PF00994 Probable molybdopterin binding domain J4N43_21345 PF00899 ThiF family J4N43_21360 PF00581 Rhodanese-like domain J4N43_21370 PF00923 Transaldolase/Fructose-6-phosphate aldolase J4N43_21375 PF00456 Transketolase, thiamine diphosphate binding domain J4N43_21375 PF02780 Transketolase, C-terminal domain J4N43_21375 PF02779 Transketolase, pyrimidine binding domain J4N43_21380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N43_21380 PF00672 HAMP domain J4N43_21380 PF12729 Four helix bundle sensory module for signal transduction J4N43_21385 PF07690 Major Facilitator Superfamily J4N43_21390 PF00793 DAHP synthetase I family J4N43_21395 PF00691 OmpA family J4N43_21395 PF01389 OmpA-like transmembrane domain J4N43_21400 PF13419 Haloacid dehalogenase-like hydrolase J4N43_21405 PF00472 RF-1 domain J4N43_21410 PF00672 HAMP domain J4N43_21410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N43_21410 PF12729 Four helix bundle sensory module for signal transduction J4N43_21415 PF00873 AcrB/AcrD/AcrF family J4N43_21420 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N43_21425 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J4N43_21430 PF07687 Peptidase dimerisation domain J4N43_21430 PF01546 Peptidase family M20/M25/M40 J4N43_21445 PF00196 Bacterial regulatory proteins, luxR family J4N43_21445 PF00072 Response regulator receiver domain J4N43_21450 PF07730 Histidine kinase J4N43_21450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_21450 PF00672 HAMP domain J4N43_21450 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term J4N43_21455 PF12838 4Fe-4S dicluster domain J4N43_21455 PF13187 4Fe-4S dicluster domain J4N43_21465 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J4N43_21465 PF00384 Molybdopterin oxidoreductase J4N43_21465 PF01568 Molydopterin dinucleotide binding domain J4N43_21470 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) J4N43_21475 PF03264 NapC/NirT cytochrome c family, N-terminal region J4N43_21485 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus J4N43_21495 PF00108 Thiolase, N-terminal domain J4N43_21495 PF02803 Thiolase, C-terminal domain J4N43_21500 PF00106 short chain dehydrogenase J4N43_21505 PF01810 LysE type translocator J4N43_21515 PF07549 SecD/SecF GG Motif J4N43_21515 PF02355 Protein export membrane protein J4N43_21520 PF02355 Protein export membrane protein J4N43_21520 PF07549 SecD/SecF GG Motif J4N43_21520 PF13721 SecD export protein N-terminal TM region J4N43_21545 PF01037 Lrp/AsnC ligand binding domain J4N43_21565 PF00529 HlyD membrane-fusion protein of T1SS J4N43_21565 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N43_21570 PF01047 MarR family J4N43_21575 PF09308 LuxQ, periplasmic J4N43_21575 PF00072 Response regulator receiver domain J4N43_21575 PF00512 His Kinase A (phospho-acceptor) domain J4N43_21575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_21580 PF13407 Periplasmic binding protein domain J4N43_21585 PF01541 GIY-YIG catalytic domain J4N43_21590 PF04337 Protein of unknown function, DUF480 J4N43_21600 PF04363 Protein of unknown function (DUF496) J4N43_21605 PF01554 MatE J4N43_21610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_21610 PF00512 His Kinase A (phospho-acceptor) domain J4N43_21610 PF01627 Hpt domain J4N43_21610 PF00072 Response regulator receiver domain J4N43_21610 PF00672 HAMP domain J4N43_21610 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J4N43_21615 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J4N43_21615 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J4N43_21635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_21635 PF03466 LysR substrate binding domain J4N43_21645 PF13520 Amino acid permease J4N43_21650 PF00155 Aminotransferase class I and II J4N43_21650 PF00392 Bacterial regulatory proteins, gntR family J4N43_21660 PF00672 HAMP domain J4N43_21660 PF16527 Two-component sensor protein CpxA, periplasmic domain J4N43_21660 PF00512 His Kinase A (phospho-acceptor) domain J4N43_21660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_21665 PF00072 Response regulator receiver domain J4N43_21665 PF00486 Transcriptional regulatory protein, C terminal J4N43_21680 PF12833 Helix-turn-helix domain J4N43_21680 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term J4N43_21690 PF00529 HlyD membrane-fusion protein of T1SS J4N43_21690 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N43_21695 PF03109 ABC1 family J4N43_21700 PF00571 CBS domain J4N43_21700 PF01769 Divalent cation transporter J4N43_21700 PF03448 MgtE intracellular N domain J4N43_21705 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin J4N43_21710 PF07969 Amidohydrolase family J4N43_21715 PF01966 HD domain J4N43_21725 PF07690 Major Facilitator Superfamily J4N43_21735 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase J4N43_21740 PF00255 Glutathione peroxidase J4N43_21755 PF01323 DSBA-like thioredoxin domain J4N43_21770 PF00486 Transcriptional regulatory protein, C terminal J4N43_21770 PF00072 Response regulator receiver domain J4N43_21775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_21775 PF00512 His Kinase A (phospho-acceptor) domain J4N43_21775 PF16527 Two-component sensor protein CpxA, periplasmic domain J4N43_21775 PF00672 HAMP domain J4N43_21785 PF01219 Prokaryotic diacylglycerol kinase J4N43_21790 PF00884 Sulfatase J4N43_21790 PF08019 Phosphoethanolamine transferase EptA/EptB J4N43_21795 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J4N43_21810 PF01734 Patatin-like phospholipase J4N43_21815 PF02678 Pirin J4N43_21815 PF05726 Pirin C-terminal cupin domain J4N43_21820 PF00313 'Cold-shock' DNA-binding domain J4N43_21835 PF00962 Adenosine/AMP deaminase J4N43_21840 PF08534 Redoxin J4N43_21840 PF00462 Glutaredoxin J4N43_21850 PF07943 Penicillin-binding protein 5, C-terminal domain J4N43_21850 PF00768 D-alanyl-D-alanine carboxypeptidase J4N43_21855 PF02798 Glutathione S-transferase, N-terminal domain J4N43_21860 PF08244 Glycosyl hydrolases family 32 C terminal J4N43_21860 PF00251 Glycosyl hydrolases family 32 N-terminal domain J4N43_21865 PF00294 pfkB family carbohydrate kinase J4N43_21870 PF02378 Phosphotransferase system, EIIC J4N43_21870 PF00367 phosphotransferase system, EIIB J4N43_21875 PF00356 Bacterial regulatory proteins, lacI family J4N43_21880 PF11471 Maltoporin periplasmic N-terminal extension J4N43_21880 PF02264 LamB porin J4N43_21930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_21930 PF03466 LysR substrate binding domain J4N43_21935 PF12833 Helix-turn-helix domain J4N43_21935 PF01497 Periplasmic binding protein J4N43_21940 PF00155 Aminotransferase class I and II J4N43_21965 PF00535 Glycosyl transferase family 2 J4N43_21975 PF00270 DEAD/DEAH box helicase J4N43_21975 PF00271 Helicase conserved C-terminal domain J4N43_21985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_21985 PF03466 LysR substrate binding domain J4N43_21990 PF03466 LysR substrate binding domain J4N43_21990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_22000 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J4N43_22005 PF08240 Alcohol dehydrogenase GroES-like domain J4N43_22005 PF00107 Zinc-binding dehydrogenase J4N43_22025 PF00155 Aminotransferase class I and II J4N43_22025 PF00392 Bacterial regulatory proteins, gntR family J4N43_22030 PF01321 Creatinase/Prolidase N-terminal domain J4N43_22030 PF00557 Metallopeptidase family M24 J4N43_22035 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family J4N43_22040 PF01037 Lrp/AsnC ligand binding domain J4N43_22045 PF00171 Aldehyde dehydrogenase family J4N43_22050 PF00202 Aminotransferase class-III J4N43_22055 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) J4N43_22070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_22070 PF03466 LysR substrate binding domain J4N43_22075 PF00709 Adenylosuccinate synthetase J4N43_22080 PF00710 Asparaginase, N-terminal J4N43_22080 PF17763 Glutaminase/Asparaginase C-terminal domain J4N43_22085 PF03618 Kinase/pyrophosphorylase J4N43_22090 PF00391 PEP-utilising enzyme, mobile domain J4N43_22090 PF02896 PEP-utilising enzyme, TIM barrel domain J4N43_22090 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain J4N43_22100 PF00072 Response regulator receiver domain J4N43_22100 PF00196 Bacterial regulatory proteins, luxR family J4N43_22105 PF00579 tRNA synthetases class I (W and Y) J4N43_22110 PF13416 Bacterial extracellular solute-binding protein J4N43_22125 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 J4N43_22125 PF00703 Glycosyl hydrolases family 2 J4N43_22125 PF02837 Glycosyl hydrolases family 2, sugar binding domain J4N43_22125 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J4N43_22130 PF02028 BCCT, betaine/carnitine/choline family transporter J4N43_22135 PF00392 Bacterial regulatory proteins, gntR family J4N43_22135 PF07702 UTRA domain J4N43_22160 PF08402 TOBE domain J4N43_22160 PF00005 ABC transporter J4N43_22180 PF00873 AcrB/AcrD/AcrF family J4N43_22200 PF00873 AcrB/AcrD/AcrF family J4N43_22205 PF13533 Biotin-lipoyl like J4N43_22210 PF13091 PLD-like domain J4N43_22215 PF00398 Ribosomal RNA adenine dimethylase J4N43_22235 PF00376 MerR family regulatory protein J4N43_22235 PF09278 MerR, DNA binding J4N43_22245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_22245 PF03466 LysR substrate binding domain J4N43_22255 PF13378 Enolase C-terminal domain-like J4N43_22255 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J4N43_22260 PF00679 Elongation factor G C-terminus J4N43_22260 PF03144 Elongation factor Tu domain 2 J4N43_22260 PF00009 Elongation factor Tu GTP binding domain J4N43_22260 PF14492 Elongation Factor G, domain II J4N43_22260 PF03764 Elongation factor G, domain IV J4N43_22285 PF02001 Protein of unknown function DUF134 J4N43_22290 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_22295 PF00571 CBS domain J4N43_22295 PF00005 ABC transporter J4N43_22300 PF04170 NlpE N-terminal domain J4N43_22300 PF17185 NlpE C-terminal OB domain J4N43_22305 PF06629 MltA-interacting protein MipA J4N43_22320 PF03466 LysR substrate binding domain J4N43_22320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_22345 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain J4N43_22345 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family J4N43_22355 PF00857 Isochorismatase family J4N43_22370 PF08220 DeoR-like helix-turn-helix domain J4N43_22370 PF00455 DeoR C terminal sensor domain J4N43_22375 PF01625 Peptide methionine sulfoxide reductase J4N43_22375 PF01641 SelR domain J4N43_22380 PF03060 Nitronate monooxygenase J4N43_22385 PF13520 Amino acid permease J4N43_22390 PF05985 Ethanolamine ammonia-lyase light chain (EutC) J4N43_22395 PF06751 Ethanolamine ammonia lyase large subunit (EutB) J4N43_22400 PF12833 Helix-turn-helix domain J4N43_22405 PF08359 YsiA-like protein, C-terminal region J4N43_22405 PF00440 Bacterial regulatory proteins, tetR family J4N43_22420 PF03466 LysR substrate binding domain J4N43_22420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_22425 PF01810 LysE type translocator J4N43_22440 PF00166 Chaperonin 10 Kd subunit J4N43_22445 PF00581 Rhodanese-like domain J4N43_22460 PF01070 FMN-dependent dehydrogenase J4N43_22480 PF00669 Bacterial flagellin N-terminal helical region J4N43_22485 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N43_22485 PF00460 Flagella basal body rod protein J4N43_22490 PF10135 Rod binding protein J4N43_22490 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase J4N43_22495 PF02119 Flagellar P-ring protein J4N43_22500 PF02107 Flagellar L-ring protein J4N43_22505 PF00460 Flagella basal body rod protein J4N43_22505 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N43_22510 PF00460 Flagella basal body rod protein J4N43_22510 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N43_22515 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N43_22515 PF00460 Flagella basal body rod protein J4N43_22515 PF07559 Flagellar basal body protein FlaE J4N43_22520 PF03963 Flagellar hook capping protein - N-terminal region J4N43_22520 PF13861 FlgD Tudor-like domain J4N43_22520 PF13860 FlgD Ig-like domain J4N43_22525 PF00460 Flagella basal body rod protein J4N43_22525 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N43_22530 PF00460 Flagella basal body rod protein J4N43_22550 PF01464 Transglycosylase SLT domain J4N43_22550 PF01476 LysM domain J4N43_22555 PF00133 tRNA synthetases class I (I, L, M and V) J4N43_22555 PF08264 Anticodon-binding domain of tRNA J4N43_22575 PF03315 Serine dehydratase beta chain J4N43_22575 PF03313 Serine dehydratase alpha chain J4N43_22585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_22585 PF03466 LysR substrate binding domain J4N43_22590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_22590 PF03466 LysR substrate binding domain J4N43_22595 PF01389 OmpA-like transmembrane domain J4N43_22595 PF00691 OmpA family J4N43_22600 PF18027 Cytosolic carboxypeptidase N-terminal domain J4N43_22600 PF00246 Zinc carboxypeptidase J4N43_22605 PF01266 FAD dependent oxidoreductase J4N43_22615 PF04393 Protein of unknown function (DUF535) J4N43_22630 PF00392 Bacterial regulatory proteins, gntR family J4N43_22630 PF07702 UTRA domain J4N43_22635 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_22640 PF00005 ABC transporter J4N43_22650 PF00266 Aminotransferase class-V J4N43_22655 PF00202 Aminotransferase class-III J4N43_22660 PF13419 Haloacid dehalogenase-like hydrolase J4N43_22665 PF00356 Bacterial regulatory proteins, lacI family J4N43_22670 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N43_22680 PF03611 PTS system sugar-specific permease component J4N43_22690 PF05922 Peptidase inhibitor I9 J4N43_22690 PF00082 Subtilase family J4N43_22695 PF00657 GDSL-like Lipase/Acylhydrolase J4N43_22700 PF00440 Bacterial regulatory proteins, tetR family J4N43_22710 PF02321 Outer membrane efflux protein J4N43_22715 PF02687 FtsX-like permease family J4N43_22715 PF12704 MacB-like periplasmic core domain J4N43_22715 PF00005 ABC transporter J4N43_22720 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N43_22725 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J4N43_22730 PF00194 Eukaryotic-type carbonic anhydrase J4N43_22735 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) J4N43_22750 PF13419 Haloacid dehalogenase-like hydrolase J4N43_22755 PF03466 LysR substrate binding domain J4N43_22755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_22775 PF12464 Maltose acetyltransferase J4N43_22775 PF14602 Hexapeptide repeat of succinyl-transferase J4N43_22780 PF02566 OsmC-like protein J4N43_22785 PF01641 SelR domain J4N43_22785 PF01625 Peptide methionine sulfoxide reductase J4N43_22800 PF04244 Deoxyribodipyrimidine photo-lyase-related protein J4N43_22805 PF00875 DNA photolyase J4N43_22805 PF03441 FAD binding domain of DNA photolyase J4N43_22810 PF00990 Diguanylate cyclase, GGDEF domain J4N43_22825 PF00990 Diguanylate cyclase, GGDEF domain J4N43_22825 PF05230 MASE2 domain J4N43_22840 PF07670 Nucleoside recognition J4N43_22840 PF07662 Na+ dependent nucleoside transporter C-terminus J4N43_22840 PF01773 Na+ dependent nucleoside transporter N-terminus J4N43_22860 PF01212 Beta-eliminating lyase J4N43_22865 PF03116 NQR2, RnfD, RnfE family J4N43_22870 PF01654 Cytochrome bd terminal oxidase subunit I J4N43_22875 PF02322 Cytochrome bd terminal oxidase subunit II J4N43_22890 PF04229 GrpB protein J4N43_22895 PF01266 FAD dependent oxidoreductase J4N43_22910 PF05525 Branched-chain amino acid transport protein J4N43_22915 PF00990 Diguanylate cyclase, GGDEF domain J4N43_22920 PF00158 Sigma-54 interaction domain J4N43_22920 PF00072 Response regulator receiver domain J4N43_22920 PF02954 Bacterial regulatory protein, Fis family J4N43_22925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_22925 PF00512 His Kinase A (phospho-acceptor) domain J4N43_22925 PF08448 PAS fold J4N43_22925 PF13426 PAS domain J4N43_22925 PF00072 Response regulator receiver domain J4N43_22930 PF00232 Glycosyl hydrolase family 1 J4N43_22945 PF03466 LysR substrate binding domain J4N43_22945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_22955 PF12706 Beta-lactamase superfamily domain J4N43_22965 PF08443 RimK-like ATP-grasp domain J4N43_22965 PF18030 RimK PreATP-grasp domain J4N43_22970 PF18030 RimK PreATP-grasp domain J4N43_22970 PF08443 RimK-like ATP-grasp domain J4N43_22975 PF00753 Metallo-beta-lactamase superfamily J4N43_22980 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J4N43_22980 PF17944 Arginine decarboxylase C-terminal helical extension J4N43_22980 PF17810 Arginine decarboxylase helical bundle domain J4N43_22985 PF00491 Arginase family J4N43_22990 PF07690 Major Facilitator Superfamily J4N43_22995 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain J4N43_22995 PF00326 Prolyl oligopeptidase family J4N43_23010 PF00950 ABC 3 transport family J4N43_23015 PF00005 ABC transporter J4N43_23020 PF01297 Zinc-uptake complex component A periplasmic J4N43_23065 PF02472 Biopolymer transport protein ExbD/TolR J4N43_23070 PF01618 MotA/TolQ/ExbB proton channel family J4N43_23075 PF01618 MotA/TolQ/ExbB proton channel family J4N43_23085 PF07715 TonB-dependent Receptor Plug Domain J4N43_23085 PF00593 TonB dependent receptor J4N43_23090 PF00672 HAMP domain J4N43_23090 PF16750 Sensor domain of 2-component histidine kinase J4N43_23090 PF00512 His Kinase A (phospho-acceptor) domain J4N43_23090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_23095 PF00486 Transcriptional regulatory protein, C terminal J4N43_23095 PF00072 Response regulator receiver domain J4N43_23100 PF03009 Glycerophosphoryl diester phosphodiesterase family J4N43_23110 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N43_23110 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J4N43_23115 PF10928 Protein of unknown function (DUF2810) J4N43_23170 PF04013 Putative SAM-dependent RNA methyltransferase J4N43_23175 PF01523 Putative modulator of DNA gyrase J4N43_23180 PF01523 Putative modulator of DNA gyrase J4N43_23185 PF08543 Phosphomethylpyrimidine kinase J4N43_23190 PF00005 ABC transporter J4N43_23195 PF00528 Binding-protein-dependent transport system inner membrane component J4N43_23200 PF09084 NMT1/THI5 like J4N43_23205 PF03070 TENA/THI-4/PQQC family J4N43_23210 PF02110 Hydroxyethylthiazole kinase family J4N43_23215 PF02581 Thiamine monophosphate synthase J4N43_23225 PF01568 Molydopterin dinucleotide binding domain J4N43_23225 PF18364 Molybdopterin oxidoreductase N-terminal domain J4N43_23225 PF00384 Molybdopterin oxidoreductase J4N43_23230 PF03264 NapC/NirT cytochrome c family, N-terminal region J4N43_23235 PF13302 Acetyltransferase (GNAT) domain J4N43_23255 PF00583 Acetyltransferase (GNAT) family J4N43_23275 PF00155 Aminotransferase class I and II J4N43_23275 PF00392 Bacterial regulatory proteins, gntR family J4N43_23280 PF02595 Glycerate kinase family J4N43_23285 PF02447 GntP family permease J4N43_23290 PF17853 GGDEF-like domain J4N43_23290 PF13556 PucR C-terminal helix-turn-helix domain J4N43_23290 PF05651 Putative sugar diacid recognition J4N43_23325 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N43_23330 PF12706 Beta-lactamase superfamily domain J4N43_23340 PF07690 Major Facilitator Superfamily J4N43_23345 PF13533 Biotin-lipoyl like J4N43_23350 PF03922 OmpW family J4N43_23355 PF13599 Pentapeptide repeats (9 copies) J4N43_23370 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading J4N43_23370 PF18416 N-acetylglucosamine binding protein domain 2 J4N43_23375 PF01037 Lrp/AsnC ligand binding domain J4N43_23380 PF01810 LysE type translocator J4N43_23385 PF04954 Siderophore-interacting protein J4N43_23385 PF08021 Siderophore-interacting FAD-binding domain J4N43_23390 PF03466 LysR substrate binding domain J4N43_23390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_23395 PF00797 N-acetyltransferase J4N43_23400 PF00107 Zinc-binding dehydrogenase J4N43_23400 PF08240 Alcohol dehydrogenase GroES-like domain J4N43_23405 PF00756 Putative esterase J4N43_23415 PF00990 Diguanylate cyclase, GGDEF domain J4N43_23415 PF17152 Periplasmic sensor domain J4N43_23430 PF03466 LysR substrate binding domain J4N43_23430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_23445 PF00849 RNA pseudouridylate synthase J4N43_23450 PF01554 MatE J4N43_23455 PF00563 EAL domain J4N43_23455 PF03707 Bacterial signalling protein N terminal repeat J4N43_23455 PF00990 Diguanylate cyclase, GGDEF domain J4N43_23465 PF06865 Pyrimidine/purine nucleoside phosphorylase J4N43_23475 PF00704 Glycosyl hydrolases family 18 J4N43_23475 PF08329 Chitinase A, N-terminal domain J4N43_23480 PF12697 Alpha/beta hydrolase family J4N43_23495 PF03600 Citrate transporter J4N43_23505 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 J4N43_23515 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain J4N43_23515 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J4N43_23520 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain J4N43_23520 PF12833 Helix-turn-helix domain J4N43_23520 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J4N43_23520 PF02805 Metal binding domain of Ada J4N43_23530 PF07681 DoxX J4N43_23535 PF02678 Pirin J4N43_23535 PF17954 Quercetinase C-terminal cupin domain J4N43_23540 PF03466 LysR substrate binding domain J4N43_23540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N43_23555 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase J4N43_23565 PF03616 Sodium/glutamate symporter J4N43_23570 PF00392 Bacterial regulatory proteins, gntR family J4N43_23570 PF00155 Aminotransferase class I and II J4N43_23575 PF00005 ABC transporter J4N43_23585 PF03616 Sodium/glutamate symporter J4N43_23600 PF00672 HAMP domain J4N43_23600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N43_23600 PF17200 Single Cache domain 2 J4N43_23605 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J4N43_23615 PF04397 LytTr DNA-binding domain J4N43_23615 PF00072 Response regulator receiver domain J4N43_23620 PF13492 GAF domain J4N43_23620 PF07694 5TMR of 5TMR-LYT J4N43_23620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_23620 PF06580 Histidine kinase J4N43_23640 PF00005 ABC transporter J4N43_23650 PF01098 Cell cycle protein J4N43_23655 PF01709 Transcriptional regulator J4N43_23665 PF01627 Hpt domain J4N43_23665 PF00512 His Kinase A (phospho-acceptor) domain J4N43_23665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N43_23665 PF00672 HAMP domain J4N43_23665 PF17149 Periplasmic sensor domain found in signal transduction proteins J4N43_23665 PF00072 Response regulator receiver domain J4N43_23675 PF00925 GTP cyclohydrolase II J4N43_23675 PF08719 Domain of unknown function (DUF1768) J4N43_23685 PF00005 ABC transporter J4N43_23685 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N43_23690 PF00005 ABC transporter J4N43_23690 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N43_23705 PF13614 AAA domain J4N43_23710 PF17762 HTH domain found in ParB protein J4N43_23710 PF02195 ParB-like nuclease domain J4N43_23805 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB J4N43_23810 PF01381 Helix-turn-helix J4N43_23905 PF07715 TonB-dependent Receptor Plug Domain J4N43_23910 PF00756 Putative esterase J4N43_23910 PF11806 Domain of unknown function (DUF3327) J4N43_23915 PF03621 MbtH-like protein J4N43_23920 PF02371 Transposase IS116/IS110/IS902 family J4N43_23920 PF01548 Transposase J4N43_23925 PF02371 Transposase IS116/IS110/IS902 family J4N43_23925 PF01548 Transposase J4N43_23930 PF13737 Transposase DDE domain J4N43_23935 PF01548 Transposase J4N43_23935 PF02371 Transposase IS116/IS110/IS902 family J4N43_23940 PF04324 BFD-like [2Fe-2S] binding domain J4N43_23940 PF01266 FAD dependent oxidoreductase J4N43_23945 PF00890 FAD binding domain J4N43_23950 PF02754 Cysteine-rich domain J4N43_23950 PF13183 4Fe-4S dicluster domain J4N43_23975 PF00313 'Cold-shock' DNA-binding domain J4N43_23990 PF00356 Bacterial regulatory proteins, lacI family J4N43_23995 PF16874 Glycosyl hydrolase family 36 C-terminal domain J4N43_23995 PF16875 Glycosyl hydrolase family 36 N-terminal domain J4N43_24000 PF00474 Sodium:solute symporter family J4N43_24005 PF16363 GDP-mannose 4,6 dehydratase J4N43_24010 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain J4N43_24010 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain J4N43_24015 PF00288 GHMP kinases N terminal domain J4N43_24015 PF10509 Galactokinase galactose-binding signature J4N43_24015 PF08544 GHMP kinases C terminal J4N43_24025 PF02028 BCCT, betaine/carnitine/choline family transporter J4N43_24050 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system J4N43_24055 PF01381 Helix-turn-helix J4N43_24105 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system J4N43_24110 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system J4N43_24145 PF00990 Diguanylate cyclase, GGDEF domain J4N43_24145 PF00072 Response regulator receiver domain J4N43_24150 PF00990 Diguanylate cyclase, GGDEF domain J4N43_24150 PF00563 EAL domain J4N43_24150 PF03707 Bacterial signalling protein N terminal repeat J4N43_24225 PF00313 'Cold-shock' DNA-binding domain J4N43_24320 PF00216 Bacterial DNA-binding protein J4N43_24325 PF00216 Bacterial DNA-binding protein J4N43_24355 PF00436 Single-strand binding protein family