locus-tag class description J4N40_00010 PF00258 Flavodoxin J4N40_00015 PF01134 Glucose inhibited division protein A J4N40_00015 PF13932 GidA associated domain J4N40_00020 PF02527 rRNA small subunit methyltransferase G J4N40_00025 PF13614 AAA domain J4N40_00030 PF17762 HTH domain found in ParB protein J4N40_00030 PF02195 ParB-like nuclease domain J4N40_00035 PF03899 ATP synthase I chain J4N40_00040 PF00119 ATP synthase A chain J4N40_00045 PF00137 ATP synthase subunit C J4N40_00050 PF00430 ATP synthase B/B' CF(0) J4N40_00055 PF00213 ATP synthase delta (OSCP) subunit J4N40_00060 PF00306 ATP synthase alpha/beta chain, C terminal domain J4N40_00060 PF02874 ATP synthase alpha/beta family, beta-barrel domain J4N40_00060 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N40_00065 PF00231 ATP synthase J4N40_00070 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N40_00070 PF02874 ATP synthase alpha/beta family, beta-barrel domain J4N40_00075 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain J4N40_00075 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain J4N40_00080 PF00132 Bacterial transferase hexapeptide (six repeats) J4N40_00080 PF12804 MobA-like NTP transferase domain J4N40_00085 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_00090 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N40_00095 PF07690 Major Facilitator Superfamily J4N40_00100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_00100 PF03466 LysR substrate binding domain J4N40_00105 PF00291 Pyridoxal-phosphate dependent enzyme J4N40_00105 PF00585 C-terminal regulatory domain of Threonine dehydratase J4N40_00110 PF00920 Dehydratase family J4N40_00115 PF01063 Amino-transferase class IV J4N40_00125 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J4N40_00125 PF00205 Thiamine pyrophosphate enzyme, central domain J4N40_00125 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J4N40_00130 PF01078 Magnesium chelatase, subunit ChlI J4N40_00130 PF13335 Magnesium chelatase, subunit ChlI C-terminal J4N40_00140 PF01553 Acyltransferase J4N40_00145 PF01323 DSBA-like thioredoxin domain J4N40_00150 PF01636 Phosphotransferase enzyme family J4N40_00155 PF13746 4Fe-4S dicluster domain J4N40_00155 PF12801 4Fe-4S binding domain J4N40_00155 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase J4N40_00160 PF06288 Protein of unknown function (DUF1040) J4N40_00170 PF07070 SpoOM protein J4N40_00175 PF03006 Haemolysin-III related J4N40_00185 PF02386 Cation transport protein J4N40_00190 PF02080 TrkA-C domain J4N40_00190 PF02254 TrkA-N domain J4N40_00195 PF01189 16S rRNA methyltransferase RsmB/F J4N40_00195 PF01029 NusB family J4N40_00200 PF02911 Formyl transferase, C-terminal domain J4N40_00200 PF00551 Formyl transferase J4N40_00205 PF01327 Polypeptide deformylase J4N40_00215 PF02481 DNA recombination-mediator protein A J4N40_00215 PF17782 DprA winged helix domain J4N40_00220 PF04361 Protein of unknown function (DUF494) J4N40_00225 PF01396 Topoisomerase DNA binding C4 zinc finger J4N40_00230 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain J4N40_00230 PF02222 ATP-grasp domain J4N40_00235 PF00731 AIR carboxylase J4N40_00240 PF01300 Telomere recombination J4N40_00245 PF01218 Coproporphyrinogen III oxidase J4N40_00250 PF18317 Shikimate 5'-dehydrogenase C-terminal domain J4N40_00250 PF08501 Shikimate dehydrogenase substrate binding domain J4N40_00250 PF01488 Shikimate / quinate 5-dehydrogenase J4N40_00255 PF07369 Protein of unknown function (DUF1488) J4N40_00260 PF00132 Bacterial transferase hexapeptide (six repeats) J4N40_00305 PF00394 Multicopper oxidase J4N40_00305 PF07731 Multicopper oxidase J4N40_00305 PF07732 Multicopper oxidase J4N40_00310 PF02537 CrcB-like protein, Camphor Resistance (CrcB) J4N40_00315 PF13667 ThiC-associated domain J4N40_00315 PF01964 Radical SAM ThiC family J4N40_00320 PF02581 Thiamine monophosphate synthase J4N40_00325 PF00899 ThiF family J4N40_00330 PF02597 ThiS family J4N40_00335 PF05690 Thiazole biosynthesis protein ThiG J4N40_00340 PF04055 Radical SAM superfamily J4N40_00340 PF06968 Biotin and Thiamin Synthesis associated domain J4N40_00345 PF01321 Creatinase/Prolidase N-terminal domain J4N40_00345 PF00557 Metallopeptidase family M24 J4N40_00345 PF01321 Creatinase/Prolidase N-terminal domain J4N40_00345 PF00557 Metallopeptidase family M24 J4N40_00350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_00350 PF03466 LysR substrate binding domain J4N40_00355 PF07690 Major Facilitator Superfamily J4N40_00375 PF05114 Protein of unknown function (DUF692) J4N40_00385 PF13361 UvrD-like helicase C-terminal domain J4N40_00385 PF00580 UvrD/REP helicase N-terminal domain J4N40_00395 PF01810 LysE type translocator J4N40_00405 PF00892 EamA-like transporter family J4N40_00410 PF09382 RQC domain J4N40_00410 PF16124 RecQ zinc-binding J4N40_00410 PF00271 Helicase conserved C-terminal domain J4N40_00410 PF00270 DEAD/DEAH box helicase J4N40_00410 PF00570 HRDC domain J4N40_00420 PF02592 Putative vitamin uptake transporter J4N40_00430 PF02541 Ppx/GppA phosphatase family J4N40_00435 PF00270 DEAD/DEAH box helicase J4N40_00435 PF00271 Helicase conserved C-terminal domain J4N40_00440 PF00085 Thioredoxin J4N40_00445 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N40_00445 PF07497 Rho termination factor, RNA-binding domain J4N40_00445 PF07498 Rho termination factor, N-terminal domain J4N40_00455 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase J4N40_00460 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N40_00465 PF00175 Oxidoreductase NAD-binding domain J4N40_00500 PF07219 HemY protein N-terminus J4N40_00505 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase J4N40_00510 PF02602 Uroporphyrinogen-III synthase HemD J4N40_00515 PF03900 Porphobilinogen deaminase, C-terminal domain J4N40_00515 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain J4N40_00520 PF01295 Adenylate cyclase, class-I J4N40_00520 PF12633 Adenylate cyclase NT domain J4N40_00525 PF01491 Frataxin-like domain J4N40_00535 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J4N40_00535 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain J4N40_00540 PF01678 Diaminopimelate epimerase J4N40_00550 PF02899 Phage integrase, N-terminal SAM-like domain J4N40_00550 PF00589 Phage integrase family J4N40_00555 PF13419 Haloacid dehalogenase-like hydrolase J4N40_00560 PF00990 Diguanylate cyclase, GGDEF domain J4N40_00560 PF10442 FIST C domain J4N40_00560 PF08495 FIST N domain J4N40_00560 PF00563 EAL domain J4N40_00565 PF03942 DTW domain J4N40_00585 PF12146 Serine aminopeptidase, S33 J4N40_00590 PF01810 LysE type translocator J4N40_00595 PF00563 EAL domain J4N40_00595 PF08668 HDOD domain J4N40_00600 PF01022 Bacterial regulatory protein, arsR family J4N40_00605 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J4N40_00605 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J4N40_00625 PF10694 Protein of unknown function (DUF2500) J4N40_00645 PF01914 MarC family integral membrane protein J4N40_00660 PF02881 SRP54-type protein, helical bundle domain J4N40_00660 PF00448 SRP54-type protein, GTPase domain J4N40_00665 PF00005 ABC transporter J4N40_00670 PF18075 FtsX extracellular domain J4N40_00675 PF04542 Sigma-70 region 2 J4N40_00675 PF00140 Sigma-70 factor, region 1.2 J4N40_00675 PF04545 Sigma-70, region 4 J4N40_00680 PF00581 Rhodanese-like domain J4N40_00685 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease J4N40_00685 PF01694 Rhomboid family J4N40_00690 PF03748 Flagellar basal body-associated protein FliL J4N40_00695 PF04345 Chorismate lyase J4N40_00700 PF01040 UbiA prenyltransferase family J4N40_00705 PF01553 Acyltransferase J4N40_00710 PF01726 LexA DNA binding domain J4N40_00710 PF00717 Peptidase S24-like J4N40_00715 PF04072 Leucine carboxyl methyltransferase J4N40_00720 PF01554 MatE J4N40_00725 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N40_00725 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4N40_00730 PF00440 Bacterial regulatory proteins, tetR family J4N40_00745 PF13426 PAS domain J4N40_00745 PF00563 EAL domain J4N40_00745 PF00990 Diguanylate cyclase, GGDEF domain J4N40_00750 PF01590 GAF domain J4N40_00750 PF00990 Diguanylate cyclase, GGDEF domain J4N40_00750 PF00360 Phytochrome region J4N40_00750 PF00563 EAL domain J4N40_00755 PF00990 Diguanylate cyclase, GGDEF domain J4N40_00755 PF00072 Response regulator receiver domain J4N40_00795 PF04002 RadC-like JAB domain J4N40_00850 PF05958 tRNA (Uracil-5-)-methyltransferase J4N40_00855 PF00593 TonB dependent receptor J4N40_00855 PF07715 TonB-dependent Receptor Plug Domain J4N40_00865 PF01177 Asp/Glu/Hydantoin racemase J4N40_00920 PF13091 PLD-like domain J4N40_00930 PF01565 FAD binding domain J4N40_00930 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain J4N40_00935 PF02237 Biotin protein ligase C terminal domain J4N40_00935 PF03099 Biotin/lipoate A/B protein ligase family J4N40_00935 PF08279 HTH domain J4N40_00940 PF00485 Phosphoribulokinase / Uridine kinase family J4N40_00965 PF00009 Elongation factor Tu GTP binding domain J4N40_00965 PF03144 Elongation factor Tu domain 2 J4N40_00965 PF03143 Elongation factor Tu C-terminal domain J4N40_00970 PF00584 SecE/Sec61-gamma subunits of protein translocation complex J4N40_00975 PF02357 Transcription termination factor nusG J4N40_00975 PF00467 KOW motif J4N40_00980 PF03946 Ribosomal protein L11, N-terminal domain J4N40_00980 PF00298 Ribosomal protein L11, RNA binding domain J4N40_00985 PF00687 Ribosomal protein L1p/L10e family J4N40_00990 PF00466 Ribosomal protein L10 J4N40_00995 PF16320 Ribosomal protein L7/L12 dimerisation domain J4N40_00995 PF00542 Ribosomal protein L7/L12 C-terminal domain J4N40_01000 PF04563 RNA polymerase beta subunit J4N40_01000 PF04560 RNA polymerase Rpb2, domain 7 J4N40_01000 PF04565 RNA polymerase Rpb2, domain 3 J4N40_01000 PF10385 RNA polymerase beta subunit external 1 domain J4N40_01000 PF00562 RNA polymerase Rpb2, domain 6 J4N40_01000 PF04561 RNA polymerase Rpb2, domain 2 J4N40_01005 PF04983 RNA polymerase Rpb1, domain 3 J4N40_01005 PF00623 RNA polymerase Rpb1, domain 2 J4N40_01005 PF05000 RNA polymerase Rpb1, domain 4 J4N40_01005 PF04997 RNA polymerase Rpb1, domain 1 J4N40_01005 PF04998 RNA polymerase Rpb1, domain 5 J4N40_01010 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ J4N40_01015 PF00293 NUDIX domain J4N40_01015 PF09297 NADH pyrophosphatase zinc ribbon domain J4N40_01020 PF01208 Uroporphyrinogen decarboxylase (URO-D) J4N40_01025 PF03167 Uracil DNA glycosylase superfamily J4N40_01030 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N40_01035 PF04222 Protein of unknown function (DUF416) J4N40_01040 PF00571 CBS domain J4N40_01040 PF01595 Cyclin M transmembrane N-terminal domain J4N40_01045 PF00216 Bacterial DNA-binding protein J4N40_01055 PF02843 Phosphoribosylglycinamide synthetase, C domain J4N40_01055 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain J4N40_01055 PF02844 Phosphoribosylglycinamide synthetase, N domain J4N40_01060 PF01808 AICARFT/IMPCHase bienzyme J4N40_01060 PF02142 MGS-like domain J4N40_01065 PF13411 MerR HTH family regulatory protein J4N40_01070 PF18500 CadC C-terminal domain 1 J4N40_01070 PF00486 Transcriptional regulatory protein, C terminal J4N40_01075 PF13520 Amino acid permease J4N40_01080 PF01276 Orn/Lys/Arg decarboxylase, major domain J4N40_01080 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain J4N40_01080 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain J4N40_01140 PF00005 ABC transporter J4N40_01140 PF12848 ABC transporter J4N40_01150 PF02954 Bacterial regulatory protein, Fis family J4N40_01155 PF01207 Dihydrouridine synthase (Dus) J4N40_01165 PF00289 Biotin carboxylase, N-terminal domain J4N40_01165 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J4N40_01165 PF02785 Biotin carboxylase C-terminal domain J4N40_01170 PF00364 Biotin-requiring enzyme J4N40_01175 PF01220 Dehydroquinase class II J4N40_01180 PF16177 Acetyl-coenzyme A synthetase N-terminus J4N40_01180 PF00501 AMP-binding enzyme J4N40_01180 PF13193 AMP-binding enzyme C-terminal domain J4N40_01195 PF12832 MFS_1 like family J4N40_01200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_01200 PF00512 His Kinase A (phospho-acceptor) domain J4N40_01200 PF09308 LuxQ, periplasmic J4N40_01200 PF00072 Response regulator receiver domain J4N40_01205 PF10415 Fumarase C C-terminus J4N40_01205 PF00206 Lyase J4N40_01220 PF00474 Sodium:solute symporter family J4N40_01230 PF00999 Sodium/hydrogen exchanger family J4N40_01230 PF02080 TrkA-C domain J4N40_01230 PF03471 Transporter associated domain J4N40_01235 PF00196 Bacterial regulatory proteins, luxR family J4N40_01235 PF00072 Response regulator receiver domain J4N40_01240 PF11412 Disulphide bond corrector protein DsbC J4N40_01240 PF02683 Cytochrome C biogenesis protein transmembrane region J4N40_01245 PF03605 Anaerobic c4-dicarboxylate membrane transporter J4N40_01250 PF10415 Fumarase C C-terminus J4N40_01250 PF00206 Lyase J4N40_01255 PF04186 FxsA cytoplasmic membrane protein J4N40_01260 PF00588 SpoU rRNA Methylase family J4N40_01265 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain J4N40_01265 PF02777 Iron/manganese superoxide dismutases, C-terminal domain J4N40_01270 PF16527 Two-component sensor protein CpxA, periplasmic domain J4N40_01270 PF00672 HAMP domain J4N40_01270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_01270 PF00512 His Kinase A (phospho-acceptor) domain J4N40_01275 PF00072 Response regulator receiver domain J4N40_01275 PF00486 Transcriptional regulatory protein, C terminal J4N40_01280 PF07813 LTXXQ motif family protein J4N40_01285 PF01545 Cation efflux family J4N40_01285 PF16916 Dimerisation domain of Zinc Transporter J4N40_01290 PF00365 Phosphofructokinase J4N40_01295 PF01554 MatE J4N40_01300 PF00166 Chaperonin 10 Kd subunit J4N40_01305 PF00118 TCP-1/cpn60 chaperonin family J4N40_01315 PF02308 MgtC family J4N40_01320 PF04055 Radical SAM superfamily J4N40_01325 PF01132 Elongation factor P (EF-P) OB domain J4N40_01325 PF08207 Elongation factor P (EF-P) KOW-like domain J4N40_01325 PF09285 Elongation factor P, C-terminal J4N40_01335 PF02313 Fumarate reductase subunit D J4N40_01340 PF02300 Fumarate reductase subunit C J4N40_01345 PF13085 2Fe-2S iron-sulfur cluster binding domain J4N40_01345 PF13183 4Fe-4S dicluster domain J4N40_01350 PF00890 FAD binding domain J4N40_01350 PF02910 Fumarate reductase flavoprotein C-term J4N40_01355 PF00152 tRNA synthetases class II (D, K and N) J4N40_01365 PF00440 Bacterial regulatory proteins, tetR family J4N40_01365 PF08360 QacR-like protein, C-terminal region J4N40_01375 PF01551 Peptidase family M23 J4N40_01380 PF06426 Serine acetyltransferase, N-terminal J4N40_01380 PF00132 Bacterial transferase hexapeptide (six repeats) J4N40_01385 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus J4N40_01385 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus J4N40_01390 PF02556 Preprotein translocase subunit SecB J4N40_01395 PF00581 Rhodanese-like domain J4N40_01400 PF01676 Metalloenzyme superfamily J4N40_01400 PF06415 BPG-independent PGAM N-terminus (iPGM_N) J4N40_01410 PF02080 TrkA-C domain J4N40_01410 PF03600 Citrate transporter J4N40_01415 PF02666 Phosphatidylserine decarboxylase J4N40_01420 PF03193 RsgA GTPase J4N40_01425 PF00929 Exonuclease J4N40_01490 PF08331 Domain of unknown function (DUF1730) J4N40_01495 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE J4N40_01500 PF01520 N-acetylmuramoyl-L-alanine amidase J4N40_01505 PF01119 DNA mismatch repair protein, C-terminal domain J4N40_01505 PF08676 MutL C terminal dimerisation domain J4N40_01515 PF17209 Hfq protein J4N40_01520 PF16360 GTP-binding GTPase Middle Region J4N40_01520 PF13167 GTP-binding GTPase N-terminal J4N40_01520 PF01926 50S ribosome-binding GTPase J4N40_01525 PF01145 SPFH domain / Band 7 family J4N40_01525 PF12221 Bacterial membrane protein N terminal J4N40_01530 PF01145 SPFH domain / Band 7 family J4N40_01535 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) J4N40_01540 PF00709 Adenylosuccinate synthetase J4N40_01545 PF08238 Sel1 repeat J4N40_01550 PF00970 Oxidoreductase FAD-binding domain J4N40_01550 PF00042 Globin J4N40_01550 PF00175 Oxidoreductase NAD-binding domain J4N40_01555 PF02082 Transcriptional regulator J4N40_01560 PF08206 Ribonuclease B OB domain J4N40_01560 PF00773 RNB domain J4N40_01560 PF00575 S1 RNA binding domain J4N40_01560 PF17876 Cold shock domain J4N40_01560 PF08461 Ribonuclease R winged-helix domain J4N40_01565 PF00588 SpoU rRNA Methylase family J4N40_01565 PF08032 RNA 2'-O ribose methyltransferase substrate binding J4N40_01570 PF13419 Haloacid dehalogenase-like hydrolase J4N40_01575 PF00579 tRNA synthetases class I (W and Y) J4N40_01590 PF00117 Glutamine amidotransferase class-I J4N40_01595 PF00202 Aminotransferase class-III J4N40_01600 PF04958 Arginine N-succinyltransferase beta subunit J4N40_01605 PF00171 Aldehyde dehydrogenase family J4N40_01615 PF00027 Cyclic nucleotide-binding domain J4N40_01615 PF13545 Crp-like helix-turn-helix domain J4N40_01620 PF00485 Phosphoribulokinase / Uridine kinase family J4N40_01625 PF06794 Uncharacterised protein family (UPF0270) J4N40_01630 PF00561 alpha/beta hydrolase fold J4N40_01640 PF00005 ABC transporter J4N40_01640 PF12848 ABC transporter J4N40_01645 PF02525 Flavodoxin-like fold J4N40_01650 PF00999 Sodium/hydrogen exchanger family J4N40_01650 PF02254 TrkA-N domain J4N40_01660 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N40_01665 PF01112 Asparaginase J4N40_01670 PF04102 SlyX J4N40_01680 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J4N40_01680 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N40_01685 PF08348 YheO-like PAS domain J4N40_01685 PF13309 HTH domain J4N40_01690 PF02635 DsrE/DsrF-like family J4N40_01695 PF02635 DsrE/DsrF-like family J4N40_01700 PF04077 DsrH like protein J4N40_01705 PF00164 Ribosomal protein S12/S23 J4N40_01710 PF00177 Ribosomal protein S7p/S5e J4N40_01715 PF03144 Elongation factor Tu domain 2 J4N40_01715 PF00009 Elongation factor Tu GTP binding domain J4N40_01715 PF14492 Elongation Factor G, domain II J4N40_01715 PF00679 Elongation factor G C-terminus J4N40_01715 PF03764 Elongation factor G, domain IV J4N40_01720 PF03143 Elongation factor Tu C-terminal domain J4N40_01720 PF00009 Elongation factor Tu GTP binding domain J4N40_01720 PF03144 Elongation factor Tu domain 2 J4N40_01725 PF04324 BFD-like [2Fe-2S] binding domain J4N40_01730 PF00210 Ferritin-like domain J4N40_01735 PF00390 Malic enzyme, N-terminal domain J4N40_01735 PF03949 Malic enzyme, NAD binding domain J4N40_01740 PF01340 Met Apo-repressor, MetJ J4N40_01745 PF01053 Cys/Met metabolism PLP-dependent enzyme J4N40_01750 PF00742 Homoserine dehydrogenase J4N40_01750 PF03447 Homoserine dehydrogenase, NAD binding domain J4N40_01750 PF00696 Amino acid kinase family J4N40_01755 PF02219 Methylenetetrahydrofolate reductase J4N40_01765 PF00311 Phosphoenolpyruvate carboxylase J4N40_01770 PF07687 Peptidase dimerisation domain J4N40_01770 PF01546 Peptidase family M20/M25/M40 J4N40_01775 PF02774 Semialdehyde dehydrogenase, dimerisation domain J4N40_01775 PF01118 Semialdehyde dehydrogenase, NAD binding domain J4N40_01780 PF00696 Amino acid kinase family J4N40_01785 PF00764 Arginosuccinate synthase J4N40_01790 PF00206 Lyase J4N40_01790 PF14698 Argininosuccinate lyase C-terminal J4N40_01790 PF00583 Acetyltransferase (GNAT) family J4N40_01800 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4N40_01800 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N40_01805 PF00462 Glutaredoxin J4N40_01805 PF08534 Redoxin J4N40_01810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_01810 PF03466 LysR substrate binding domain J4N40_01815 PF00912 Transglycosylase J4N40_01815 PF00905 Penicillin binding protein transpeptidase domain J4N40_01815 PF17092 Penicillin-binding protein OB-like domain J4N40_01825 PF05137 Fimbrial assembly protein (PilN) J4N40_01835 PF04351 Pilus assembly protein, PilP J4N40_01840 PF03958 Bacterial type II/III secretion system short domain J4N40_01840 PF11741 AMIN domain J4N40_01840 PF00263 Bacterial type II and III secretion system protein J4N40_01840 PF07660 Secretin and TonB N terminus short domain J4N40_01845 PF01202 Shikimate kinase J4N40_01850 PF01761 3-dehydroquinate synthase J4N40_01860 PF02086 D12 class N6 adenine-specific DNA methyltransferase J4N40_01865 PF00834 Ribulose-phosphate 3 epimerase family J4N40_01870 PF01250 Ribosomal protein S6 J4N40_01875 PF00436 Single-strand binding protein family J4N40_01880 PF01084 Ribosomal protein S18 J4N40_01885 PF03948 Ribosomal protein L9, C-terminal domain J4N40_01885 PF01281 Ribosomal protein L9, N-terminal domain J4N40_01895 PF00772 DnaB-like helicase N terminal domain J4N40_01895 PF03796 DnaB-like helicase C terminal domain J4N40_01900 PF01168 Alanine racemase, N-terminal domain J4N40_01900 PF00842 Alanine racemase, C-terminal domain J4N40_01905 PF01894 Uncharacterised protein family UPF0047 J4N40_01910 PF00342 Phosphoglucose isomerase J4N40_01920 PF01475 Ferric uptake regulator family J4N40_01940 PF03432 Relaxase/Mobilisation nuclease domain J4N40_01970 PF12161 HsdM N-terminal domain J4N40_01970 PF02384 N-6 DNA Methylase J4N40_01980 PF12008 Type I restriction and modification enzyme - subunit R C terminal J4N40_01980 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) J4N40_01980 PF18766 SWI2/SNF2 ATPase J4N40_02005 PF00589 Phage integrase family J4N40_02010 PF01207 Dihydrouridine synthase (Dus) J4N40_02030 PF00667 FAD binding domain J4N40_02030 PF00175 Oxidoreductase NAD-binding domain J4N40_02030 PF00258 Flavodoxin J4N40_02035 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain J4N40_02035 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J4N40_02040 PF01507 Phosphoadenosine phosphosulfate reductase family J4N40_02095 PF00999 Sodium/hydrogen exchanger family J4N40_02100 PF02310 B12 binding domain J4N40_02100 PF02607 B12 binding domain J4N40_02100 PF02965 Vitamin B12 dependent methionine synthase, activation domain J4N40_02100 PF00809 Pterin binding enzyme J4N40_02100 PF02574 Homocysteine S-methyltransferase J4N40_02105 PF00696 Amino acid kinase family J4N40_02105 PF01842 ACT domain J4N40_02110 PF00266 Aminotransferase class-V J4N40_02120 PF17760 UvrA interaction domain J4N40_02120 PF00005 ABC transporter J4N40_02120 PF17755 UvrA DNA-binding domain J4N40_02125 PF00483 Nucleotidyl transferase J4N40_02130 PF00196 Bacterial regulatory proteins, luxR family J4N40_02135 PF00436 Single-strand binding protein family J4N40_02140 PF17157 Gammaproteobacterial periplasmic sensor domain J4N40_02140 PF00563 EAL domain J4N40_02140 PF00990 Diguanylate cyclase, GGDEF domain J4N40_02160 PF00263 Bacterial type II and III secretion system protein J4N40_02160 PF03958 Bacterial type II/III secretion system short domain J4N40_02165 PF13401 AAA domain J4N40_02165 PF01471 Putative peptidoglycan binding domain J4N40_02175 PF00437 Type II/IV secretion system protein J4N40_02175 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J4N40_02180 PF00482 Type II secretion system (T2SS), protein F J4N40_02190 PF07963 Prokaryotic N-terminal methylation motif J4N40_02190 PF00114 Pilin (bacterial filament) J4N40_02230 PF04085 rod shape-determining protein MreC J4N40_02235 PF04093 rod shape-determining protein MreD J4N40_02240 PF02545 Maf-like protein J4N40_02245 PF10150 Ribonuclease E/G family J4N40_02245 PF00575 S1 RNA binding domain J4N40_02250 PF13502 AsmA-like C-terminal region J4N40_02250 PF13116 Protein of unknown function J4N40_02255 PF00795 Carbon-nitrogen hydrolase J4N40_02260 PF01523 Putative modulator of DNA gyrase J4N40_02265 PF02562 PhoH-like protein J4N40_02265 PF13638 PIN domain J4N40_02270 PF18337 RapA N-terminal Tudor like domain J4N40_02270 PF00271 Helicase conserved C-terminal domain J4N40_02270 PF00176 SNF2 family N-terminal domain J4N40_02270 PF12137 RNA polymerase recycling family C-terminal J4N40_02270 PF18339 RapA N-terminal Tudor like domain 1 J4N40_02280 PF00849 RNA pseudouridylate synthase J4N40_02285 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J4N40_02285 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N40_02290 PF04751 Protein of unknown function (DUF615) J4N40_02295 PF01523 Putative modulator of DNA gyrase J4N40_02300 PF03448 MgtE intracellular N domain J4N40_02300 PF00571 CBS domain J4N40_02300 PF01769 Divalent cation transporter J4N40_02305 PF00381 PTS HPr component phosphorylation site J4N40_02310 PF03668 P-loop ATPase protein family J4N40_02315 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N40_02320 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein J4N40_02325 PF00309 Sigma-54 factor, Activator interacting domain (AID) J4N40_02325 PF04552 Sigma-54, DNA binding domain J4N40_02325 PF04963 Sigma-54 factor, core binding domain J4N40_02330 PF12399 Branched-chain amino acid ATP-binding cassette transporter J4N40_02330 PF00005 ABC transporter J4N40_02335 PF03968 OstA-like protein J4N40_02345 PF00571 CBS domain J4N40_02345 PF01380 SIS domain J4N40_02350 PF01699 Sodium/calcium exchanger protein J4N40_02355 PF00005 ABC transporter J4N40_02360 PF02405 Permease MlaE J4N40_02365 PF02470 MlaD protein J4N40_02370 PF05494 MlaC protein J4N40_02380 PF01722 BolA-like protein J4N40_02385 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J4N40_02390 PF01553 Acyltransferase J4N40_02395 PF01042 Endoribonuclease L-PSP J4N40_02400 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain J4N40_02400 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain J4N40_02405 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J4N40_02405 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J4N40_02415 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J4N40_02415 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J4N40_02425 PF06877 Regulator of ribonuclease activity B J4N40_02435 PF00583 Acetyltransferase (GNAT) family J4N40_02445 PF08264 Anticodon-binding domain of tRNA J4N40_02445 PF00133 tRNA synthetases class I (I, L, M and V) J4N40_02445 PF10458 Valyl tRNA synthetase tRNA binding arm J4N40_02450 PF04364 DNA polymerase III chi subunit, HolC J4N40_02455 PF00883 Cytosol aminopeptidase family, catalytic domain J4N40_02455 PF02789 Cytosol aminopeptidase family, N-terminal domain J4N40_02460 PF03739 Lipopolysaccharide export system permease LptF/LptG J4N40_02465 PF03739 Lipopolysaccharide export system permease LptF/LptG J4N40_02475 PF10011 Predicted membrane protein (DUF2254) J4N40_02490 PF01522 Polysaccharide deacetylase J4N40_02495 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N40_02500 PF02378 Phosphotransferase system, EIIC J4N40_02505 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit J4N40_02510 PF11975 Family 4 glycosyl hydrolase C-terminal domain J4N40_02510 PF02056 Family 4 glycosyl hydrolase J4N40_02515 PF04794 YdjC-like protein J4N40_02520 PF00356 Bacterial regulatory proteins, lacI family J4N40_02570 PF00171 Aldehyde dehydrogenase family J4N40_02600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N40_02600 PF17200 Single Cache domain 2 J4N40_02600 PF00672 HAMP domain J4N40_02640 PF01464 Transglycosylase SLT domain J4N40_02640 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain J4N40_02645 PF04362 Bacterial Fe(2+) trafficking J4N40_02650 PF14815 NUDIX domain J4N40_02650 PF00730 HhH-GPD superfamily base excision DNA repair protein J4N40_02650 PF00633 Helix-hairpin-helix motif J4N40_02655 PF02390 Putative methyltransferase J4N40_02660 PF02086 D12 class N6 adenine-specific DNA methyltransferase J4N40_02665 PF04960 Glutaminase J4N40_02670 PF04055 Radical SAM superfamily J4N40_02670 PF06969 HemN C-terminal domain J4N40_02675 PF01725 Ham1 family J4N40_02685 PF02594 Uncharacterised ACR, YggU family COG1872 J4N40_02690 PF02325 YGGT family J4N40_02695 PF03807 NADP oxidoreductase coenzyme F420-dependent J4N40_02695 PF14748 Pyrroline-5-carboxylate reductase dimerisation J4N40_02700 PF01168 Alanine racemase, N-terminal domain J4N40_02705 PF00437 Type II/IV secretion system protein J4N40_02710 PF00437 Type II/IV secretion system protein J4N40_02715 PF03652 Holliday junction resolvase J4N40_02720 PF02622 Uncharacterized ACR, COG1678 J4N40_02725 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain J4N40_02725 PF02951 Prokaryotic glutathione synthetase, N-terminal domain J4N40_02730 PF04452 RNA methyltransferase J4N40_02735 PF04231 Endonuclease I J4N40_02740 PF10263 SprT-like family J4N40_02740 PF17283 SprT-like zinc ribbon domain J4N40_02750 PF02772 S-adenosylmethionine synthetase, central domain J4N40_02750 PF02773 S-adenosylmethionine synthetase, C-terminal domain J4N40_02750 PF00438 S-adenosylmethionine synthetase, N-terminal domain J4N40_02755 PF02779 Transketolase, pyrimidine binding domain J4N40_02755 PF02780 Transketolase, C-terminal domain J4N40_02755 PF00456 Transketolase, thiamine diphosphate binding domain J4N40_02760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_02760 PF03466 LysR substrate binding domain J4N40_02765 PF07715 TonB-dependent Receptor Plug Domain J4N40_02765 PF00593 TonB dependent receptor J4N40_02770 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J4N40_02770 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J4N40_02775 PF00162 Phosphoglycerate kinase J4N40_02780 PF01116 Fructose-bisphosphate aldolase class-II J4N40_02785 PF00924 Mechanosensitive ion channel J4N40_02785 PF05552 Conserved TM helix J4N40_02795 PF01810 LysE type translocator J4N40_02800 PF03466 LysR substrate binding domain J4N40_02800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_02805 PF04402 Protein of unknown function (DUF541) J4N40_02810 PF01842 ACT domain J4N40_02810 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N40_02810 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J4N40_02815 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) J4N40_02820 PF01812 5-formyltetrahydrofolate cyclo-ligase family J4N40_02830 PF05164 Cell division protein ZapA J4N40_02835 PF03695 Uncharacterised protein family (UPF0149) J4N40_02840 PF01494 FAD binding domain J4N40_02845 PF01494 FAD binding domain J4N40_02860 PF01571 Aminomethyltransferase folate-binding domain J4N40_02865 PF03937 Flavinator of succinate dehydrogenase J4N40_02870 PF00890 FAD binding domain J4N40_02870 PF02910 Fumarate reductase flavoprotein C-term J4N40_02875 PF04542 Sigma-70 region 2 J4N40_02875 PF08281 Sigma-70, region 4 J4N40_02880 PF03873 Anti sigma-E protein RseA, C-terminal domain J4N40_02880 PF03872 Anti sigma-E protein RseA, N-terminal domain J4N40_02885 PF17188 MucB/RseB C-terminal domain J4N40_02885 PF03888 MucB/RseB N-terminal domain J4N40_02895 PF03144 Elongation factor Tu domain 2 J4N40_02895 PF06421 GTP-binding protein LepA C-terminus J4N40_02895 PF00009 Elongation factor Tu GTP binding domain J4N40_02895 PF00679 Elongation factor G C-terminus J4N40_02900 PF10502 Signal peptidase, peptidase S26 J4N40_02905 PF00035 Double-stranded RNA binding motif J4N40_02905 PF14622 Ribonuclease-III-like J4N40_02910 PF07650 KH domain J4N40_02910 PF01926 50S ribosome-binding GTPase J4N40_02915 PF02565 Recombination protein O C terminal J4N40_02915 PF11967 Recombination protein O N terminal J4N40_02920 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ J4N40_02925 PF01648 4'-phosphopantetheinyl transferase superfamily J4N40_02930 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J4N40_02930 PF00072 Response regulator receiver domain J4N40_02930 PF01627 Hpt domain J4N40_02930 PF00512 His Kinase A (phospho-acceptor) domain J4N40_02930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_02930 PF00672 HAMP domain J4N40_02935 PF01938 TRAM domain J4N40_02935 PF05958 tRNA (Uracil-5-)-methyltransferase J4N40_02940 PF02824 TGS domain J4N40_02940 PF13291 ACT domain J4N40_02940 PF04607 Region found in RelA / SpoT proteins J4N40_02945 PF03819 MazG nucleotide pyrophosphohydrolase domain J4N40_02950 PF06418 CTP synthase N-terminus J4N40_02950 PF00117 Glutamine amidotransferase class-I J4N40_02955 PF03952 Enolase, N-terminal domain J4N40_02955 PF00113 Enolase, C-terminal TIM barrel domain J4N40_02960 PF04977 Septum formation initiator J4N40_02965 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase J4N40_02970 PF02542 YgbB family J4N40_02975 PF01142 tRNA pseudouridine synthase D (TruD) J4N40_02980 PF01975 Survival protein SurE J4N40_02990 PF01476 LysM domain J4N40_02990 PF01551 Peptidase family M23 J4N40_02995 PF00140 Sigma-70 factor, region 1.2 J4N40_02995 PF04545 Sigma-70, region 4 J4N40_02995 PF04539 Sigma-70 region 3 J4N40_02995 PF04542 Sigma-70 region 2 J4N40_03000 PF00488 MutS domain V J4N40_03000 PF05188 MutS domain II J4N40_03000 PF01624 MutS domain I J4N40_03000 PF05192 MutS domain III J4N40_03000 PF05190 MutS family domain IV J4N40_03005 PF02464 Competence-damaged protein J4N40_03010 PF00154 recA bacterial DNA recombination protein J4N40_03015 PF02631 RecX family J4N40_03020 PF02272 DHHA1 domain J4N40_03020 PF01411 tRNA synthetases class II (A) J4N40_03020 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J4N40_03025 PF00696 Amino acid kinase family J4N40_03025 PF01842 ACT domain J4N40_03025 PF13840 ACT domain J4N40_03030 PF02599 Global regulator protein family J4N40_03085 PF04277 Oxaloacetate decarboxylase, gamma chain J4N40_03090 PF02436 Conserved carboxylase domain J4N40_03090 PF00364 Biotin-requiring enzyme J4N40_03090 PF00682 HMGL-like J4N40_03095 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit J4N40_03100 PF00107 Zinc-binding dehydrogenase J4N40_03100 PF08240 Alcohol dehydrogenase GroES-like domain J4N40_03105 PF09335 SNARE associated Golgi protein J4N40_03110 PF05193 Peptidase M16 inactive domain J4N40_03110 PF00675 Insulinase (Peptidase family M16) J4N40_03115 PF04262 Glutamate-cysteine ligase J4N40_03125 PF02664 S-Ribosylhomocysteinase (LuxS) J4N40_03130 PF00571 CBS domain J4N40_03130 PF03471 Transporter associated domain J4N40_03130 PF01595 Cyclin M transmembrane N-terminal domain J4N40_03135 PF01578 Cytochrome C assembly protein J4N40_03140 PF00448 SRP54-type protein, GTPase domain J4N40_03140 PF02881 SRP54-type protein, helical bundle domain J4N40_03140 PF02978 Signal peptide binding domain J4N40_03145 PF00886 Ribosomal protein S16 J4N40_03150 PF05239 PRC-barrel domain J4N40_03150 PF01782 RimM N-terminal domain J4N40_03155 PF01746 tRNA (Guanine-1)-methyltransferase J4N40_03160 PF01245 Ribosomal protein L19 J4N40_03165 PF03884 DNA gyrase inhibitor YacG J4N40_03170 PF07072 Cell division protein J4N40_03175 PF01121 Dephospho-CoA kinase J4N40_03180 PF06750 Bacterial Peptidase A24 N-terminal domain J4N40_03180 PF01478 Type IV leader peptidase family J4N40_03185 PF00482 Type II secretion system (T2SS), protein F J4N40_03190 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J4N40_03190 PF00437 Type II/IV secretion system protein J4N40_03195 PF00114 Pilin (bacterial filament) J4N40_03195 PF07963 Prokaryotic N-terminal methylation motif J4N40_03200 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain J4N40_03200 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain J4N40_03205 PF01510 N-acetylmuramoyl-L-alanine amidase J4N40_03210 PF07729 FCD domain J4N40_03210 PF00392 Bacterial regulatory proteins, gntR family J4N40_03215 PF17831 Pyruvate dehydrogenase E1 component middle domain J4N40_03215 PF00456 Transketolase, thiamine diphosphate binding domain J4N40_03220 PF02817 e3 binding domain J4N40_03220 PF00364 Biotin-requiring enzyme J4N40_03220 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J4N40_03225 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4N40_03225 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N40_03230 PF00440 Bacterial regulatory proteins, tetR family J4N40_03235 PF00156 Phosphoribosyl transferase domain J4N40_03240 PF00484 Carbonic anhydrase J4N40_03245 PF01740 STAS domain J4N40_03245 PF00916 Sulfate permease family J4N40_03250 PF00005 ABC transporter J4N40_03255 PF01061 ABC-2 type transporter J4N40_03260 PF03279 Bacterial lipid A biosynthesis acyltransferase J4N40_03265 PF02569 Pantoate-beta-alanine ligase J4N40_03270 PF02548 Ketopantoate hydroxymethyltransferase J4N40_03275 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J4N40_03280 PF01743 Poly A polymerase head domain J4N40_03280 PF12626 Polymerase A arginine-rich C-terminus J4N40_03280 PF12627 Probable RNA and SrmB- binding site of polymerase A J4N40_03285 PF00749 tRNA synthetases class I (E and Q), catalytic domain J4N40_03290 PF01258 Prokaryotic dksA/traR C4-type zinc finger J4N40_03295 PF03749 Sugar fermentation stimulation protein RE domain J4N40_03295 PF17746 SfsA N-terminal OB domain J4N40_03300 PF00270 DEAD/DEAH box helicase J4N40_03300 PF04408 Helicase associated domain (HA2) J4N40_03300 PF00271 Helicase conserved C-terminal domain J4N40_03300 PF08482 ATP-dependent helicase C-terminal J4N40_03305 PF00905 Penicillin binding protein transpeptidase domain J4N40_03305 PF00912 Transglycosylase J4N40_03305 PF14814 Bifunctional transglycosylase second domain J4N40_03310 PF01734 Patatin-like phospholipase J4N40_03315 PF06434 Aconitate hydratase 2 N-terminus J4N40_03315 PF11791 Aconitate B N-terminal domain J4N40_03315 PF00330 Aconitase family (aconitate hydratase) J4N40_03320 PF06062 Uncharacterised protein family (UPF0231) J4N40_03325 PF00543 Nitrogen regulatory protein P-II J4N40_03330 PF00909 Ammonium Transporter Family J4N40_03335 PF13416 Bacterial extracellular solute-binding protein J4N40_03345 PF00005 ABC transporter J4N40_03345 PF08402 TOBE domain J4N40_03350 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J4N40_03350 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J4N40_03350 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J4N40_03350 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J4N40_03355 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain J4N40_03355 PF06165 Glycosyltransferase family 36 J4N40_03360 PF00728 Glycosyl hydrolase family 20, catalytic domain J4N40_03360 PF02838 Glycosyl hydrolase family 20, domain 2 J4N40_03365 PF01869 BadF/BadG/BcrA/BcrD ATPase family J4N40_03375 PF00005 ABC transporter J4N40_03375 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N40_03380 PF00005 ABC transporter J4N40_03380 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N40_03385 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_03385 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N40_03390 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_03395 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N40_03400 PF09308 LuxQ, periplasmic J4N40_03400 PF00072 Response regulator receiver domain J4N40_03400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_03400 PF00512 His Kinase A (phospho-acceptor) domain J4N40_03405 PF05175 Methyltransferase small domain J4N40_03405 PF08468 Methyltransferase small domain N-terminal J4N40_03410 PF01594 AI-2E family transporter J4N40_03415 PF00202 Aminotransferase class-III J4N40_03420 PF01521 Iron-sulphur cluster biosynthesis J4N40_03430 PF00873 AcrB/AcrD/AcrF family J4N40_03435 PF08525 Opacity-associated protein A N-terminal motif J4N40_03435 PF01551 Peptidase family M23 J4N40_03435 PF01476 LysM domain J4N40_03440 PF00579 tRNA synthetases class I (W and Y) J4N40_03450 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family J4N40_03455 PF13609 Gram-negative porin J4N40_03460 PF03449 Transcription elongation factor, N-terminal J4N40_03460 PF01272 Transcription elongation factor, GreA/GreB, C-term J4N40_03465 PF01985 CRS1 / YhbY (CRM) domain J4N40_03470 PF01728 FtsJ-like methyltransferase J4N40_03475 PF01434 Peptidase family M41 J4N40_03475 PF06480 FtsH Extracellular J4N40_03475 PF17862 AAA+ lid domain J4N40_03475 PF00004 ATPase family associated with various cellular activities (AAA) J4N40_03480 PF00809 Pterin binding enzyme J4N40_03485 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J4N40_03485 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J4N40_03485 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J4N40_03485 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J4N40_03490 PF03840 Preprotein translocase SecG subunit J4N40_03505 PF17384 RimP C-terminal SH3 domain J4N40_03505 PF02576 RimP N-terminal domain J4N40_03510 PF13184 NusA-like KH domain J4N40_03510 PF00575 S1 RNA binding domain J4N40_03510 PF08529 NusA N-terminal domain J4N40_03515 PF11987 Translation-initiation factor 2 J4N40_03515 PF08364 Bacterial translation initiation factor IF-2 associated region J4N40_03515 PF04760 Translation initiation factor IF-2, N-terminal region J4N40_03515 PF00009 Elongation factor Tu GTP binding domain J4N40_03520 PF02033 Ribosome-binding factor A J4N40_03525 PF09157 Pseudouridine synthase II TruB, C-terminal J4N40_03525 PF16198 tRNA pseudouridylate synthase B C-terminal domain J4N40_03525 PF01509 TruB family pseudouridylate synthase (N terminal domain) J4N40_03530 PF00312 Ribosomal protein S15 J4N40_03535 PF00013 KH domain J4N40_03535 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain J4N40_03535 PF03725 3' exoribonuclease family, domain 2 J4N40_03535 PF00575 S1 RNA binding domain J4N40_03535 PF01138 3' exoribonuclease family, domain 1 J4N40_03540 PF07719 Tetratricopeptide repeat J4N40_03540 PF13181 Tetratricopeptide repeat J4N40_03550 PF01554 MatE J4N40_03555 PF01136 Peptidase family U32 J4N40_03560 PF01136 Peptidase family U32 J4N40_03565 PF00563 EAL domain J4N40_03565 PF00990 Diguanylate cyclase, GGDEF domain J4N40_03565 PF03707 Bacterial signalling protein N terminal repeat J4N40_03570 PF02036 SCP-2 sterol transfer family J4N40_03575 PF13508 Acetyltransferase (GNAT) domain J4N40_03595 PF00009 Elongation factor Tu GTP binding domain J4N40_03595 PF03144 Elongation factor Tu domain 2 J4N40_03595 PF16658 Class II release factor RF3, C-terminal domain J4N40_03605 PF01026 TatD related DNase J4N40_03610 PF07670 Nucleoside recognition J4N40_03610 PF07662 Na+ dependent nucleoside transporter C-terminus J4N40_03610 PF01773 Na+ dependent nucleoside transporter N-terminus J4N40_03615 PF01791 DeoC/LacD family aldolase J4N40_03620 PF02885 Glycosyl transferase family, helical bundle domain J4N40_03620 PF00591 Glycosyl transferase family, a/b domain J4N40_03620 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain J4N40_03625 PF01676 Metalloenzyme superfamily J4N40_03630 PF01048 Phosphorylase superfamily J4N40_03640 PF18429 Domain of unknown function (DUF5609) J4N40_03650 PF18073 Rubredoxin metal binding domain J4N40_03655 PF00679 Elongation factor G C-terminus J4N40_03655 PF14492 Elongation Factor G, domain II J4N40_03655 PF03764 Elongation factor G, domain IV J4N40_03655 PF00009 Elongation factor Tu GTP binding domain J4N40_03655 PF03144 Elongation factor Tu domain 2 J4N40_03660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_03660 PF03466 LysR substrate binding domain J4N40_03670 PF00501 AMP-binding enzyme J4N40_03700 PF00196 Bacterial regulatory proteins, luxR family J4N40_03710 PF03466 LysR substrate binding domain J4N40_03710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_03715 PF00356 Bacterial regulatory proteins, lacI family J4N40_03735 PF01544 CorA-like Mg2+ transporter protein J4N40_03740 PF01266 FAD dependent oxidoreductase J4N40_03740 PF16901 C-terminal domain of alpha-glycerophosphate oxidase J4N40_03745 PF00455 DeoR C terminal sensor domain J4N40_03745 PF08220 DeoR-like helix-turn-helix domain J4N40_03750 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J4N40_03750 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J4N40_03755 PF00230 Major intrinsic protein J4N40_03760 PF07690 Major Facilitator Superfamily J4N40_03765 PF03009 Glycerophosphoryl diester phosphodiesterase family J4N40_03770 PF14602 Hexapeptide repeat of succinyl-transferase J4N40_03770 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle J4N40_03785 PF07130 YebG protein J4N40_03790 PF03466 LysR substrate binding domain J4N40_03790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_03800 PF11893 Domain of unknown function (DUF3413) J4N40_03800 PF00884 Sulfatase J4N40_03805 PF17946 RecC C-terminal domain J4N40_03810 PF12705 PD-(D/E)XK nuclease superfamily J4N40_03810 PF00580 UvrD/REP helicase N-terminal domain J4N40_03810 PF13361 UvrD-like helicase C-terminal domain J4N40_03815 PF13538 UvrD-like helicase C-terminal domain J4N40_03835 PF00696 Amino acid kinase family J4N40_03835 PF00583 Acetyltransferase (GNAT) family J4N40_03845 PF03562 MltA specific insert domain J4N40_03845 PF06725 3D domain J4N40_03850 PF00899 ThiF family J4N40_03855 PF02657 Fe-S metabolism associated domain J4N40_03860 PF00990 Diguanylate cyclase, GGDEF domain J4N40_03860 PF17158 Membrane-associated sensor, integral membrane domain J4N40_03865 PF00266 Aminotransferase class-V J4N40_03870 PF01965 DJ-1/PfpI family J4N40_03875 PF08546 Ketopantoate reductase PanE/ApbA C terminal J4N40_03875 PF02558 Ketopantoate reductase PanE/ApbA J4N40_03880 PF03502 Nucleoside-specific channel-forming protein, Tsx J4N40_03895 PF04542 Sigma-70 region 2 J4N40_03895 PF04545 Sigma-70, region 4 J4N40_03905 PF07690 Major Facilitator Superfamily J4N40_03910 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J4N40_03915 PF03923 Uncharacterized lipoprotein J4N40_03915 PF08139 Prokaryotic membrane lipoprotein lipid attachment site J4N40_03920 PF05175 Methyltransferase small domain J4N40_03925 PF01722 BolA-like protein J4N40_03930 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) J4N40_03930 PF11973 NQRA C-terminal domain J4N40_03935 PF03116 NQR2, RnfD, RnfE family J4N40_03940 PF04205 FMN-binding domain J4N40_03945 PF02508 Rnf-Nqr subunit, membrane protein J4N40_03950 PF02508 Rnf-Nqr subunit, membrane protein J4N40_03955 PF00175 Oxidoreductase NAD-binding domain J4N40_03955 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N40_03955 PF00970 Oxidoreductase FAD-binding domain J4N40_03960 PF02424 ApbE family J4N40_03970 PF00990 Diguanylate cyclase, GGDEF domain J4N40_03970 PF00072 Response regulator receiver domain J4N40_03980 PF11799 impB/mucB/samB family C-terminal domain J4N40_03980 PF11798 IMS family HHH motif J4N40_03980 PF00817 impB/mucB/samB family J4N40_03985 PF00270 DEAD/DEAH box helicase J4N40_03985 PF09382 RQC domain J4N40_03985 PF16124 RecQ zinc-binding J4N40_03985 PF00570 HRDC domain J4N40_03985 PF00271 Helicase conserved C-terminal domain J4N40_03990 PF03449 Transcription elongation factor, N-terminal J4N40_03990 PF01272 Transcription elongation factor, GreA/GreB, C-term J4N40_04000 PF06483 Chitinase C J4N40_04000 PF00704 Glycosyl hydrolases family 18 J4N40_04005 PF00209 Sodium:neurotransmitter symporter family J4N40_04015 PF06786 Uncharacterised protein family (UPF0253) J4N40_04025 PF03129 Anticodon binding domain J4N40_04025 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J4N40_04025 PF04073 Aminoacyl-tRNA editing domain J4N40_04030 PF01980 tRNA-methyltransferase O J4N40_04030 PF18389 TrmO C-terminal domain J4N40_04035 PF01197 Ribosomal protein L31 J4N40_04040 PF00444 Ribosomal protein L36 J4N40_04045 PF03806 AbgT putative transporter family J4N40_04070 PF01370 NAD dependent epimerase/dehydratase family J4N40_04075 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J4N40_04075 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J4N40_04080 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 J4N40_04105 PF04287 tRNA pseudouridine synthase C J4N40_04110 PF00849 RNA pseudouridylate synthase J4N40_04115 PF11944 Protein of unknown function (DUF3461) J4N40_04120 PF08335 GlnD PII-uridylyltransferase J4N40_04120 PF01909 Nucleotidyltransferase domain J4N40_04120 PF01966 HD domain J4N40_04120 PF01842 ACT domain J4N40_04125 PF00557 Metallopeptidase family M24 J4N40_04130 PF00318 Ribosomal protein S2 J4N40_04135 PF00889 Elongation factor TS J4N40_04140 PF00696 Amino acid kinase family J4N40_04145 PF01765 Ribosome recycling factor J4N40_04150 PF01255 Putative undecaprenyl diphosphate synthase J4N40_04160 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain J4N40_04160 PF13288 DXP reductoisomerase C-terminal domain J4N40_04160 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase J4N40_04165 PF02163 Peptidase family M50 J4N40_04165 PF17820 PDZ domain J4N40_04170 PF07244 Surface antigen variable number repeat J4N40_04170 PF01103 Surface antigen J4N40_04175 PF03938 Outer membrane protein (OmpH-like) J4N40_04180 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD J4N40_04180 PF00132 Bacterial transferase hexapeptide (six repeats) J4N40_04185 PF07977 FabA-like domain J4N40_04190 PF00132 Bacterial transferase hexapeptide (six repeats) J4N40_04190 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 J4N40_04195 PF02684 Lipid-A-disaccharide synthetase J4N40_04200 PF01351 Ribonuclease HII J4N40_04205 PF02811 PHP domain J4N40_04205 PF01336 OB-fold nucleic acid binding domain J4N40_04205 PF07733 Bacterial DNA polymerase III alpha NTPase domain J4N40_04205 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J4N40_04205 PF14579 Helix-hairpin-helix motif J4N40_04210 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit J4N40_04215 PF09179 TilS substrate binding domain J4N40_04215 PF11734 TilS substrate C-terminal domain J4N40_04215 PF01171 PP-loop family J4N40_04220 PF00034 Cytochrome c J4N40_04225 PF00543 Nitrogen regulatory protein P-II J4N40_04230 PF03372 Endonuclease/Exonuclease/phosphatase family J4N40_04240 PF01476 LysM domain J4N40_04240 PF01464 Transglycosylase SLT domain J4N40_04245 PF00753 Metallo-beta-lactamase superfamily J4N40_04245 PF16123 Hydroxyacylglutathione hydrolase C-terminus J4N40_04250 PF08241 Methyltransferase domain J4N40_04255 PF00075 RNase H J4N40_04260 PF00929 Exonuclease J4N40_04285 PF01740 STAS domain J4N40_04285 PF00916 Sulfate permease family J4N40_04290 PF09317 Domain of unknown function (DUF1974) J4N40_04290 PF02770 Acyl-CoA dehydrogenase, middle domain J4N40_04290 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J4N40_04290 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J4N40_04295 PF13580 SIS domain J4N40_04300 PF13230 Glutamine amidotransferases class-II J4N40_04305 PF00551 Formyl transferase J4N40_04310 PF00586 AIR synthase related protein, N-terminal domain J4N40_04310 PF02769 AIR synthase related protein, C-terminal domain J4N40_04320 PF00860 Permease family J4N40_04335 PF03358 NADPH-dependent FMN reductase J4N40_04340 PF03960 ArsC family J4N40_04345 PF01435 Peptidase family M48 J4N40_04345 PF13181 Tetratricopeptide repeat J4N40_04355 PF01594 AI-2E family transporter J4N40_04360 PF00578 AhpC/TSA family J4N40_04370 PF00701 Dihydrodipicolinate synthetase family J4N40_04375 PF06804 NlpB/DapX lipoprotein J4N40_04390 PF07687 Peptidase dimerisation domain J4N40_04390 PF01546 Peptidase family M20/M25/M40 J4N40_04395 PF03960 ArsC family J4N40_04415 PF11143 Protein of unknown function (DUF2919) J4N40_04420 PF04261 Dyp-type peroxidase family J4N40_04425 PF00700 Bacterial flagellin C-terminal helical region J4N40_04425 PF07196 Flagellin hook IN motif J4N40_04425 PF00669 Bacterial flagellin N-terminal helical region J4N40_04430 PF00700 Bacterial flagellin C-terminal helical region J4N40_04430 PF07196 Flagellin hook IN motif J4N40_04430 PF00669 Bacterial flagellin N-terminal helical region J4N40_04435 PF00700 Bacterial flagellin C-terminal helical region J4N40_04435 PF07196 Flagellin hook IN motif J4N40_04435 PF00669 Bacterial flagellin N-terminal helical region J4N40_04440 PF03646 FlaG protein J4N40_04445 PF07196 Flagellin hook IN motif J4N40_04445 PF07195 Flagellar hook-associated protein 2 C-terminus J4N40_04445 PF02465 Flagellar hook-associated protein 2 N-terminus J4N40_04455 PF02561 Flagellar protein FliS J4N40_04460 PF00158 Sigma-54 interaction domain J4N40_04460 PF06490 Flagellar regulatory protein FleQ J4N40_04460 PF02954 Bacterial regulatory protein, Fis family J4N40_04465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_04465 PF13188 PAS domain J4N40_04465 PF00512 His Kinase A (phospho-acceptor) domain J4N40_04470 PF02954 Bacterial regulatory protein, Fis family J4N40_04470 PF00072 Response regulator receiver domain J4N40_04470 PF00158 Sigma-54 interaction domain J4N40_04475 PF02049 Flagellar hook-basal body complex protein FliE J4N40_04480 PF01514 Secretory protein of YscJ/FliF family J4N40_04480 PF08345 Flagellar M-ring protein C-terminal J4N40_04485 PF01706 FliG C-terminal domain J4N40_04485 PF14841 FliG middle domain J4N40_04485 PF14842 FliG N-terminal domain J4N40_04495 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N40_04495 PF18269 T3SS EscN ATPase C-terminal domain J4N40_04520 PF02154 Flagellar motor switch protein FliM J4N40_04520 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J4N40_04525 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J4N40_04530 PF04347 Flagellar biosynthesis protein, FliO J4N40_04535 PF00813 FliP family J4N40_04540 PF01313 Bacterial export proteins, family 3 J4N40_04545 PF01311 Bacterial export proteins, family 1 J4N40_04550 PF01312 FlhB HrpN YscU SpaS Family J4N40_04555 PF00771 FHIPEP family J4N40_04560 PF00448 SRP54-type protein, GTPase domain J4N40_04565 PF10609 NUBPL iron-transfer P-loop NTPase J4N40_04570 PF04542 Sigma-70 region 2 J4N40_04570 PF04539 Sigma-70 region 3 J4N40_04570 PF04545 Sigma-70, region 4 J4N40_04575 PF00072 Response regulator receiver domain J4N40_04580 PF04344 Chemotaxis phosphatase, CheZ J4N40_04585 PF01584 CheW-like domain J4N40_04585 PF02895 Signal transducing histidine kinase, homodimeric domain J4N40_04585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_04585 PF01627 Hpt domain J4N40_04585 PF00072 Response regulator receiver domain J4N40_04590 PF01339 CheB methylesterase J4N40_04590 PF00072 Response regulator receiver domain J4N40_04595 PF13614 AAA domain J4N40_04605 PF01584 CheW-like domain J4N40_04615 PF00005 ABC transporter J4N40_04620 PF03379 CcmB protein J4N40_04625 PF01578 Cytochrome C assembly protein J4N40_04630 PF04995 Heme exporter protein D (CcmD) J4N40_04635 PF03100 CcmE J4N40_04640 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal J4N40_04640 PF01578 Cytochrome C assembly protein J4N40_04645 PF08534 Redoxin J4N40_04650 PF03918 Cytochrome C biogenesis protein J4N40_04655 PF03918 Cytochrome C biogenesis protein J4N40_04660 PF04333 MlaA lipoprotein J4N40_04665 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J4N40_04670 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J4N40_04680 PF08281 Sigma-70, region 4 J4N40_04680 PF04542 Sigma-70 region 2 J4N40_04685 PF02803 Thiolase, C-terminal domain J4N40_04685 PF00108 Thiolase, N-terminal domain J4N40_04690 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J4N40_04690 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J4N40_04690 PF00378 Enoyl-CoA hydratase/isomerase J4N40_04700 PF00675 Insulinase (Peptidase family M16) J4N40_04700 PF05193 Peptidase M16 inactive domain J4N40_04700 PF16187 Middle or third domain of peptidase_M16 J4N40_04705 PF00300 Histidine phosphatase superfamily (branch 1) J4N40_04710 PF01713 Smr domain J4N40_04715 PF05175 Methyltransferase small domain J4N40_04720 PF01264 Chorismate synthase J4N40_04725 PF03458 UPF0126 domain J4N40_04730 PF04315 Elongation factor P hydroxylase J4N40_04735 PF08891 YfcL protein J4N40_04740 PF03358 NADPH-dependent FMN reductase J4N40_04745 PF01266 FAD dependent oxidoreductase J4N40_04745 PF05430 S-adenosyl-L-methionine-dependent methyltransferase J4N40_04750 PF00109 Beta-ketoacyl synthase, N-terminal domain J4N40_04750 PF02801 Beta-ketoacyl synthase, C-terminal domain J4N40_04755 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J4N40_04755 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N40_04755 PF11890 Domain of unknown function (DUF3410) J4N40_04760 PF01118 Semialdehyde dehydrogenase, NAD binding domain J4N40_04760 PF02774 Semialdehyde dehydrogenase, dimerisation domain J4N40_04770 PF01416 tRNA pseudouridine synthase J4N40_04775 PF01039 Carboxyl transferase domain J4N40_04775 PF17848 Acetyl-coA carboxylase zinc finger domain J4N40_04780 PF02875 Mur ligase family, glutamate ligase domain J4N40_04780 PF08245 Mur ligase middle domain J4N40_04785 PF05036 Sporulation related domain J4N40_04790 PF02674 Colicin V production protein J4N40_04795 PF00156 Phosphoribosyl transferase domain J4N40_04800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_04800 PF03466 LysR substrate binding domain J4N40_04805 PF00072 Response regulator receiver domain J4N40_04810 PF04304 Protein of unknown function (DUF454) J4N40_04815 PF00156 Phosphoribosyl transferase domain J4N40_04820 PF12169 DNA polymerase III subunits gamma and tau domain III J4N40_04820 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding J4N40_04820 PF12170 DNA polymerase III tau subunit V interacting with alpha J4N40_04825 PF02575 YbaB/EbfC DNA-binding family J4N40_04830 PF02132 RecR protein J4N40_04830 PF13662 Toprim domain J4N40_04835 PF00230 Major intrinsic protein J4N40_04845 PF01042 Endoribonuclease L-PSP J4N40_04850 PF03313 Serine dehydratase alpha chain J4N40_04860 PF03692 Putative zinc- or iron-chelating domain J4N40_04865 PF04226 Transglycosylase associated protein J4N40_04870 PF03692 Putative zinc- or iron-chelating domain J4N40_04875 PF00924 Mechanosensitive ion channel J4N40_04875 PF05552 Conserved TM helix J4N40_04880 PF03992 Antibiotic biosynthesis monooxygenase J4N40_04885 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N40_04895 PF00245 Alkaline phosphatase J4N40_04910 PF13847 Methyltransferase domain J4N40_04915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N40_04915 PF08447 PAS fold J4N40_04915 PF13426 PAS domain J4N40_04920 PF01263 Aldose 1-epimerase J4N40_04925 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J4N40_04925 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J4N40_04930 PF01641 SelR domain J4N40_04940 PF07023 Protein of unknown function (DUF1315) J4N40_04945 PF00710 Asparaginase, N-terminal J4N40_04945 PF17763 Glutaminase/Asparaginase C-terminal domain J4N40_04950 PF01343 Peptidase family S49 J4N40_04955 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J4N40_04955 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N40_04965 PF00881 Nitroreductase family J4N40_04970 PF01751 Toprim domain J4N40_04970 PF01131 DNA topoisomerase J4N40_04980 PF00106 short chain dehydrogenase J4N40_04985 PF00850 Histone deacetylase domain J4N40_04995 PF00884 Sulfatase J4N40_04995 PF11893 Domain of unknown function (DUF3413) J4N40_05000 PF07208 Protein of unknown function (DUF1414) J4N40_05005 PF04245 37-kD nucleoid-associated bacterial protein J4N40_05020 PF03553 Na+/H+ antiporter family J4N40_05025 PF02774 Semialdehyde dehydrogenase, dimerisation domain J4N40_05025 PF01118 Semialdehyde dehydrogenase, NAD binding domain J4N40_05030 PF00027 Cyclic nucleotide-binding domain J4N40_05030 PF00520 Ion transport protein J4N40_05035 PF01914 MarC family integral membrane protein J4N40_05040 PF00171 Aldehyde dehydrogenase family J4N40_05040 PF00465 Iron-containing alcohol dehydrogenase J4N40_05055 PF02777 Iron/manganese superoxide dismutases, C-terminal domain J4N40_05055 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain J4N40_05060 PF00462 Glutaredoxin J4N40_05080 PF13726 Na+-H+ antiporter family J4N40_05080 PF03553 Na+/H+ antiporter family J4N40_05085 PF00929 Exonuclease J4N40_05090 PF18393 MotY N-terminal domain J4N40_05090 PF00691 OmpA family J4N40_05095 PF10952 Protein of unknown function (DUF2753) J4N40_05100 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N40_05105 PF10576 Iron-sulfur binding domain of endonuclease III J4N40_05105 PF00633 Helix-hairpin-helix motif J4N40_05105 PF00730 HhH-GPD superfamily base excision DNA repair protein J4N40_05110 PF02508 Rnf-Nqr subunit, membrane protein J4N40_05115 PF04205 FMN-binding domain J4N40_05120 PF03116 NQR2, RnfD, RnfE family J4N40_05125 PF13375 RnfC Barrel sandwich hybrid domain J4N40_05125 PF10531 SLBB domain J4N40_05125 PF12838 4Fe-4S dicluster domain J4N40_05125 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit J4N40_05130 PF04060 Putative Fe-S cluster J4N40_05135 PF02508 Rnf-Nqr subunit, membrane protein J4N40_05140 PF01228 Glycine radical J4N40_05140 PF02901 Pyruvate formate lyase-like J4N40_05150 PF12344 Ultra-violet resistance protein B J4N40_05150 PF17757 UvrB interaction domain J4N40_05150 PF04851 Type III restriction enzyme, res subunit J4N40_05150 PF00271 Helicase conserved C-terminal domain J4N40_05150 PF02151 UvrB/uvrC motif J4N40_05155 PF00072 Response regulator receiver domain J4N40_05155 PF00158 Sigma-54 interaction domain J4N40_05155 PF02954 Bacterial regulatory protein, Fis family J4N40_05160 PF01627 Hpt domain J4N40_05165 PF01933 Uncharacterised protein family UPF0052 J4N40_05170 PF06463 Molybdenum Cofactor Synthesis C J4N40_05170 PF04055 Radical SAM superfamily J4N40_05175 PF00994 Probable molybdopterin binding domain J4N40_05180 PF01967 MoaC family J4N40_05185 PF02597 ThiS family J4N40_05190 PF02391 MoaE protein J4N40_05195 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N40_05200 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_05205 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_05205 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N40_05210 PF00005 ABC transporter J4N40_05210 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N40_05215 PF00005 ABC transporter J4N40_05215 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N40_05220 PF13409 Glutathione S-transferase, N-terminal domain J4N40_05230 PF07085 DRTGG domain J4N40_05230 PF01515 Phosphate acetyl/butaryl transferase J4N40_05235 PF00871 Acetokinase family J4N40_05240 PF04217 Protein of unknown function, DUF412 J4N40_05250 PF02653 Branched-chain amino acid transport system / permease component J4N40_05255 PF00005 ABC transporter J4N40_05260 PF00128 Alpha amylase, catalytic domain J4N40_05260 PF02903 Alpha amylase, N-terminal ig-like domain J4N40_05265 PF17158 Membrane-associated sensor, integral membrane domain J4N40_05265 PF00990 Diguanylate cyclase, GGDEF domain J4N40_05270 PF01207 Dihydrouridine synthase (Dus) J4N40_05275 PF02810 SEC-C motif J4N40_05275 PF03695 Uncharacterised protein family (UPF0149) J4N40_05280 PF02600 Disulfide bond formation protein DsbB J4N40_05285 PF06450 Bacterial Na+/H+ antiporter B (NhaB) J4N40_05290 PF07840 FadR C-terminal domain J4N40_05290 PF00392 Bacterial regulatory proteins, gntR family J4N40_05315 PF09334 tRNA synthetases class I (M) J4N40_05315 PF01588 Putative tRNA binding domain J4N40_05320 PF10609 NUBPL iron-transfer P-loop NTPase J4N40_05325 PF00485 Phosphoribulokinase / Uridine kinase family J4N40_05335 PF12557 Cob(I)alamin adenosyltransferase N terminal J4N40_05335 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP J4N40_05340 PF01451 Low molecular weight phosphotyrosine protein phosphatase J4N40_05345 PF01740 STAS domain J4N40_05345 PF00916 Sulfate permease family J4N40_05350 PF00575 S1 RNA binding domain J4N40_05350 PF10150 Ribonuclease E/G family J4N40_05350 PF12111 Polyribonucleotide phosphorylase C terminal J4N40_05355 PF01479 S4 domain J4N40_05355 PF00849 RNA pseudouridylate synthase J4N40_05360 PF02545 Maf-like protein J4N40_05365 PF02620 Large ribosomal RNA subunit accumulation protein YceD J4N40_05370 PF01783 Ribosomal L32p protein family J4N40_05375 PF02504 Fatty acid synthesis protein J4N40_05380 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J4N40_05380 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J4N40_05385 PF00698 Acyl transferase domain J4N40_05395 PF00550 Phosphopantetheine attachment site J4N40_05400 PF02801 Beta-ketoacyl synthase, C-terminal domain J4N40_05400 PF00109 Beta-ketoacyl synthase, N-terminal domain J4N40_05405 PF01063 Amino-transferase class IV J4N40_05410 PF02618 YceG-like family J4N40_05415 PF02223 Thymidylate kinase J4N40_05420 PF09115 DNA polymerase III, delta subunit, C terminal J4N40_05425 PF01026 TatD related DNase J4N40_05430 PF02378 Phosphotransferase system, EIIC J4N40_05430 PF00367 phosphotransferase system, EIIB J4N40_05445 PF00209 Sodium:neurotransmitter symporter family J4N40_05460 PF01734 Patatin-like phospholipase J4N40_05465 PF00224 Pyruvate kinase, barrel domain J4N40_05465 PF02887 Pyruvate kinase, alpha/beta domain J4N40_05470 PF00480 ROK family J4N40_05475 PF01584 CheW-like domain J4N40_05475 PF00072 Response regulator receiver domain J4N40_05480 PF01336 OB-fold nucleic acid binding domain J4N40_05480 PF07733 Bacterial DNA polymerase III alpha NTPase domain J4N40_05480 PF02811 PHP domain J4N40_05480 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J4N40_05480 PF14579 Helix-hairpin-helix motif J4N40_05495 PF00106 short chain dehydrogenase J4N40_05500 PF08496 Peptidase family S49 N-terminal J4N40_05500 PF01343 Peptidase family S49 J4N40_05505 PF02224 Cytidylate kinase J4N40_05510 PF00575 S1 RNA binding domain J4N40_05515 PF00216 Bacterial DNA-binding protein J4N40_05520 PF06305 Lipopolysaccharide assembly protein A domain J4N40_05525 PF18073 Rubredoxin metal binding domain J4N40_05530 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family J4N40_05535 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N40_05555 PF02470 MlaD protein J4N40_05560 PF04403 Paraquat-inducible protein A J4N40_05565 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J4N40_05570 PF00034 Cytochrome c J4N40_05575 PF01568 Molydopterin dinucleotide binding domain J4N40_05575 PF00384 Molybdopterin oxidoreductase J4N40_05575 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J4N40_05580 PF03916 Polysulphide reductase, NrfD J4N40_05585 PF13247 4Fe-4S dicluster domain J4N40_05590 PF00512 His Kinase A (phospho-acceptor) domain J4N40_05590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_05595 PF00072 Response regulator receiver domain J4N40_05595 PF00196 Bacterial regulatory proteins, luxR family J4N40_05605 PF11412 Disulphide bond corrector protein DsbC J4N40_05605 PF02683 Cytochrome C biogenesis protein transmembrane region J4N40_05610 PF00085 Thioredoxin J4N40_05630 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N40_05640 PF00005 ABC transporter J4N40_05640 PF02687 FtsX-like permease family J4N40_05640 PF12704 MacB-like periplasmic core domain J4N40_05645 PF00005 ABC transporter J4N40_05645 PF12704 MacB-like periplasmic core domain J4N40_05645 PF02687 FtsX-like permease family J4N40_05650 PF02687 FtsX-like permease family J4N40_05650 PF00005 ABC transporter J4N40_05650 PF12704 MacB-like periplasmic core domain J4N40_05670 PF08267 Cobalamin-independent synthase, N-terminal domain J4N40_05670 PF01717 Cobalamin-independent synthase, Catalytic domain J4N40_05680 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N40_05680 PF00529 HlyD membrane-fusion protein of T1SS J4N40_05685 PF03466 LysR substrate binding domain J4N40_05685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_05700 PF00512 His Kinase A (phospho-acceptor) domain J4N40_05700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_05700 PF00672 HAMP domain J4N40_05705 PF00486 Transcriptional regulatory protein, C terminal J4N40_05705 PF00072 Response regulator receiver domain J4N40_05710 PF00535 Glycosyl transferase family 2 J4N40_05715 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase J4N40_05735 PF11842 Domain of unknown function (DUF3362) J4N40_05735 PF04055 Radical SAM superfamily J4N40_05735 PF08497 Radical SAM N-terminal J4N40_05755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_05755 PF03466 LysR substrate binding domain J4N40_05760 PF01717 Cobalamin-independent synthase, Catalytic domain J4N40_05760 PF08267 Cobalamin-independent synthase, N-terminal domain J4N40_05770 PF03795 YCII-related domain J4N40_05775 PF03061 Thioesterase superfamily J4N40_05780 PF04279 Intracellular septation protein A J4N40_05790 PF00072 Response regulator receiver domain J4N40_05790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_05795 PF17327 Acyl homoserine lactone synthase J4N40_05800 PF00375 Sodium:dicarboxylate symporter family J4N40_05805 PF00501 AMP-binding enzyme J4N40_05805 PF13193 AMP-binding enzyme C-terminal domain J4N40_05810 PF00027 Cyclic nucleotide-binding domain J4N40_05810 PF13545 Crp-like helix-turn-helix domain J4N40_05815 PF00290 Tryptophan synthase alpha chain J4N40_05820 PF00291 Pyridoxal-phosphate dependent enzyme J4N40_05825 PF00218 Indole-3-glycerol phosphate synthase J4N40_05825 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase J4N40_05830 PF02885 Glycosyl transferase family, helical bundle domain J4N40_05830 PF00591 Glycosyl transferase family, a/b domain J4N40_05835 PF00117 Glutamine amidotransferase class-I J4N40_05840 PF04715 Anthranilate synthase component I, N terminal region J4N40_05840 PF00425 chorismate binding enzyme J4N40_05845 PF08056 Tryptophan operon leader peptide J4N40_05850 PF02811 PHP domain J4N40_05855 PF01300 Telomere recombination J4N40_05865 PF01479 S4 domain J4N40_05865 PF00849 RNA pseudouridylate synthase J4N40_05870 PF04269 Protein of unknown function, DUF440 J4N40_05875 PF01132 Elongation factor P (EF-P) OB domain J4N40_05875 PF08207 Elongation factor P (EF-P) KOW-like domain J4N40_05875 PF09285 Elongation factor P, C-terminal J4N40_05885 PF00136 DNA polymerase family B J4N40_05885 PF03104 DNA polymerase family B, exonuclease domain J4N40_05890 PF00196 Bacterial regulatory proteins, luxR family J4N40_05890 PF00072 Response regulator receiver domain J4N40_05895 PF01541 GIY-YIG catalytic domain J4N40_05895 PF02151 UvrB/uvrC motif J4N40_05895 PF08459 UvrC Helix-hairpin-helix N-terminal J4N40_05900 PF01066 CDP-alcohol phosphatidyltransferase J4N40_05925 PF00202 Aminotransferase class-III J4N40_05930 PF03435 Saccharopine dehydrogenase NADP binding domain J4N40_05930 PF16653 Saccharopine dehydrogenase C-terminal domain J4N40_05935 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain J4N40_05950 PF00994 Probable molybdopterin binding domain J4N40_05960 PF00268 Ribonucleotide reductase, small chain J4N40_05965 PF03477 ATP cone domain J4N40_05965 PF02867 Ribonucleotide reductase, barrel domain J4N40_05965 PF00317 Ribonucleotide reductase, all-alpha domain J4N40_05975 PF03989 DNA gyrase C-terminal domain, beta-propeller J4N40_05975 PF00521 DNA gyrase/topoisomerase IV, subunit A J4N40_05990 PF02335 Cytochrome c552 J4N40_06000 PF13247 4Fe-4S dicluster domain J4N40_06005 PF03916 Polysulphide reductase, NrfD J4N40_06010 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal J4N40_06010 PF01578 Cytochrome C assembly protein J4N40_06015 PF08534 Redoxin J4N40_06020 PF03918 Cytochrome C biogenesis protein J4N40_06030 PF00925 GTP cyclohydrolase II J4N40_06055 PF01471 Putative peptidoglycan binding domain J4N40_06055 PF03734 L,D-transpeptidase catalytic domain J4N40_06060 PF05951 Bacterial protein of unknown function (DUF882) J4N40_06065 PF00753 Metallo-beta-lactamase superfamily J4N40_06080 PF03480 Bacterial extracellular solute-binding protein, family 7 J4N40_06090 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J4N40_06095 PF07730 Histidine kinase J4N40_06095 PF17200 Single Cache domain 2 J4N40_06100 PF00072 Response regulator receiver domain J4N40_06100 PF00196 Bacterial regulatory proteins, luxR family J4N40_06110 PF02028 BCCT, betaine/carnitine/choline family transporter J4N40_06115 PF00672 HAMP domain J4N40_06115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N40_06135 PF00155 Aminotransferase class I and II J4N40_06150 PF00155 Aminotransferase class I and II J4N40_06150 PF00392 Bacterial regulatory proteins, gntR family J4N40_06160 PF01336 OB-fold nucleic acid binding domain J4N40_06160 PF00152 tRNA synthetases class II (D, K and N) J4N40_06165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N40_06165 PF17200 Single Cache domain 2 J4N40_06165 PF00672 HAMP domain J4N40_06170 PF01242 6-pyruvoyl tetrahydropterin synthase J4N40_06180 PF00563 EAL domain J4N40_06180 PF04940 Sensors of blue-light using FAD J4N40_06185 PF03315 Serine dehydratase beta chain J4N40_06185 PF03313 Serine dehydratase alpha chain J4N40_06190 PF03222 Tryptophan/tyrosine permease family J4N40_06195 PF00293 NUDIX domain J4N40_06205 PF00072 Response regulator receiver domain J4N40_06205 PF09308 LuxQ, periplasmic J4N40_06205 PF00512 His Kinase A (phospho-acceptor) domain J4N40_06205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_06210 PF00425 chorismate binding enzyme J4N40_06210 PF04715 Anthranilate synthase component I, N terminal region J4N40_06225 PF04317 YcjX-like family, DUF463 J4N40_06230 PF05128 Domain of unknown function (DUF697) J4N40_06235 PF18024 Helix-turn-helix domain J4N40_06235 PF00158 Sigma-54 interaction domain J4N40_06240 PF13302 Acetyltransferase (GNAT) domain J4N40_06255 PF00589 Phage integrase family J4N40_06255 PF13495 Phage integrase, N-terminal SAM-like domain J4N40_06370 PF00583 Acetyltransferase (GNAT) family J4N40_06615 PF01337 Barstar (barnase inhibitor) J4N40_06870 PF13508 Acetyltransferase (GNAT) domain J4N40_06870 PF00583 Acetyltransferase (GNAT) family J4N40_06880 PF05154 TM2 domain J4N40_06925 PF01928 CYTH domain J4N40_07010 PF01810 LysE type translocator J4N40_07035 PF13673 Acetyltransferase (GNAT) domain J4N40_07035 PF04229 GrpB protein J4N40_07380 PF00293 NUDIX domain J4N40_07380 PF13344 Haloacid dehalogenase-like hydrolase J4N40_07395 PF13333 Integrase core domain J4N40_07395 PF13276 HTH-like domain J4N40_07395 PF00665 Integrase core domain J4N40_07465 PF08274 PhnA Zinc-Ribbon J4N40_07465 PF03831 PhnA domain J4N40_07565 PF14602 Hexapeptide repeat of succinyl-transferase J4N40_07565 PF12464 Maltose acetyltransferase J4N40_07570 PF13302 Acetyltransferase (GNAT) domain J4N40_07575 PF01411 tRNA synthetases class II (A) J4N40_07575 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J4N40_07595 PF07237 Protein of unknown function (DUF1428) J4N40_07600 PF01810 LysE type translocator J4N40_07605 PF01810 LysE type translocator J4N40_07610 PF11008 Protein of unknown function (DUF2846) J4N40_07615 PF01103 Surface antigen J4N40_07615 PF17243 POTRA domain TamA domain 1 J4N40_07620 PF13091 PLD-like domain J4N40_07625 PF00135 Carboxylesterase family J4N40_07640 PF13533 Biotin-lipoyl like J4N40_07655 PF00155 Aminotransferase class I and II J4N40_07660 PF08543 Phosphomethylpyrimidine kinase J4N40_07675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_07675 PF03466 LysR substrate binding domain J4N40_07690 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N40_07705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_07705 PF00989 PAS fold J4N40_07705 PF17203 Single cache domain 3 J4N40_07705 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain J4N40_07710 PF12431 Transcriptional regulator J4N40_07710 PF00072 Response regulator receiver domain J4N40_07715 PF07715 TonB-dependent Receptor Plug Domain J4N40_07715 PF00593 TonB dependent receptor J4N40_07720 PF02311 AraC-like ligand binding domain J4N40_07720 PF12833 Helix-turn-helix domain J4N40_07725 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain J4N40_07725 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain J4N40_07730 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase J4N40_07735 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain J4N40_07735 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J4N40_07755 PF01590 GAF domain J4N40_07755 PF02954 Bacterial regulatory protein, Fis family J4N40_07755 PF00158 Sigma-54 interaction domain J4N40_07760 PF00171 Aldehyde dehydrogenase family J4N40_07780 PF12833 Helix-turn-helix domain J4N40_07795 PF00263 Bacterial type II and III secretion system protein J4N40_07795 PF03958 Bacterial type II/III secretion system short domain J4N40_07800 PF16697 Inner membrane component of T3SS, cytoplasmic domain J4N40_07800 PF16693 Inner membrane component of T3SS, periplasmic domain J4N40_07810 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF J4N40_07815 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) J4N40_07825 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI J4N40_07830 PF01514 Secretory protein of YscJ/FliF family J4N40_07840 PF02108 Flagellar assembly protein FliH J4N40_07850 PF02661 Fic/DOC family J4N40_07880 PF12833 Helix-turn-helix domain J4N40_07880 PF12852 Cupin J4N40_07885 PF01312 FlhB HrpN YscU SpaS Family J4N40_07890 PF01311 Bacterial export proteins, family 1 J4N40_07895 PF01313 Bacterial export proteins, family 3 J4N40_07900 PF00813 FliP family J4N40_07905 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J4N40_07920 PF18269 T3SS EscN ATPase C-terminal domain J4N40_07920 PF02874 ATP synthase alpha/beta family, beta-barrel domain J4N40_07920 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N40_07930 PF09059 TyeA J4N40_07950 PF00771 FHIPEP family J4N40_07955 PF09621 Type III secretion system regulator (LcrR) J4N40_07965 PF04792 V antigen (LcrV) protein J4N40_07970 PF07720 Tetratricopeptide repeat J4N40_07980 PF05844 YopD protein J4N40_07990 PF16868 NMT1-like family J4N40_07995 PF01925 Sulfite exporter TauE/SafE J4N40_08005 PF01970 Tripartite tricarboxylate transporter TctA family J4N40_08035 PF00285 Citrate synthase, C-terminal domain J4N40_08040 PF00330 Aconitase family (aconitate hydratase) J4N40_08040 PF00694 Aconitase C-terminal domain J4N40_08045 PF04303 PrpF protein J4N40_08050 PF16177 Acetyl-coenzyme A synthetase N-terminus J4N40_08050 PF00501 AMP-binding enzyme J4N40_08050 PF13193 AMP-binding enzyme C-terminal domain J4N40_08060 PF00089 Trypsin J4N40_08075 PF04055 Radical SAM superfamily J4N40_08080 PF06508 Queuosine biosynthesis protein QueC J4N40_08090 PF01810 LysE type translocator J4N40_08095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_08095 PF03466 LysR substrate binding domain J4N40_08100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_08100 PF03466 LysR substrate binding domain J4N40_08105 PF00873 AcrB/AcrD/AcrF family J4N40_08115 PF03466 LysR substrate binding domain J4N40_08115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_08120 PF00267 Gram-negative porin J4N40_08130 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N40_08135 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_08140 PF00005 ABC transporter J4N40_08145 PF02574 Homocysteine S-methyltransferase J4N40_08145 PF00809 Pterin binding enzyme J4N40_08145 PF02965 Vitamin B12 dependent methionine synthase, activation domain J4N40_08145 PF02607 B12 binding domain J4N40_08145 PF02310 B12 binding domain J4N40_08150 PF08240 Alcohol dehydrogenase GroES-like domain J4N40_08150 PF00107 Zinc-binding dehydrogenase J4N40_08160 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N40_08165 PF00857 Isochorismatase family J4N40_08170 PF12833 Helix-turn-helix domain J4N40_08170 PF02311 AraC-like ligand binding domain J4N40_08175 PF00109 Beta-ketoacyl synthase, N-terminal domain J4N40_08175 PF02801 Beta-ketoacyl synthase, C-terminal domain J4N40_08175 PF00550 Phosphopantetheine attachment site J4N40_08175 PF08659 KR domain J4N40_08175 PF00107 Zinc-binding dehydrogenase J4N40_08175 PF08240 Alcohol dehydrogenase GroES-like domain J4N40_08175 PF00698 Acyl transferase domain J4N40_08175 PF14765 Polyketide synthase dehydratase J4N40_08175 PF16197 Ketoacyl-synthetase C-terminal extension J4N40_08185 PF07690 Major Facilitator Superfamily J4N40_08190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_08190 PF03466 LysR substrate binding domain J4N40_08200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_08200 PF03466 LysR substrate binding domain J4N40_08205 PF00248 Aldo/keto reductase family J4N40_08215 PF01614 Bacterial transcriptional regulator J4N40_08215 PF09339 IclR helix-turn-helix domain J4N40_08220 PF13185 GAF domain J4N40_08220 PF00990 Diguanylate cyclase, GGDEF domain J4N40_08230 PF05736 OprF membrane domain J4N40_08230 PF00691 OmpA family J4N40_08245 PF00691 OmpA family J4N40_08260 PF10672 S-adenosylmethionine-dependent methyltransferase J4N40_08260 PF17785 PUA-like domain J4N40_08265 PF00672 HAMP domain J4N40_08265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N40_08265 PF17200 Single Cache domain 2 J4N40_08270 PF00708 Acylphosphatase J4N40_08275 PF04358 DsrC like protein J4N40_08285 PF01027 Inhibitor of apoptosis-promoting Bax1 J4N40_08290 PF00005 ABC transporter J4N40_08295 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_08300 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_08305 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N40_08310 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N40_08310 PF10414 Sirohaem synthase dimerisation region J4N40_08310 PF14824 Sirohaem biosynthesis protein central J4N40_08315 PF04461 Protein of unknown function (DUF520) J4N40_08320 PF00793 DAHP synthetase I family J4N40_08340 PF01189 16S rRNA methyltransferase RsmB/F J4N40_08340 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF J4N40_08340 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF J4N40_08345 PF02470 MlaD protein J4N40_08350 PF04403 Paraquat-inducible protein A J4N40_08355 PF00664 ABC transporter transmembrane region J4N40_08355 PF00005 ABC transporter J4N40_08360 PF13185 GAF domain J4N40_08365 PF17516 ProQ C-terminal domain J4N40_08365 PF04352 ProQ/FINO family J4N40_08370 PF17804 Tail specific protease N-terminal domain J4N40_08370 PF03572 Peptidase family S41 J4N40_08370 PF00595 PDZ domain J4N40_08370 PF11818 C-terminal domain of tail specific protease (DUF3340) J4N40_08380 PF01433 Peptidase family M1 domain J4N40_08380 PF17432 Domain of unknown function (DUF3458_C) ARM repeats J4N40_08380 PF11940 Domain of unknown function (DUF3458) Ig-like fold J4N40_08390 PF05088 Bacterial NAD-glutamate dehydrogenase J4N40_08395 PF01180 Dihydroorotate dehydrogenase J4N40_08400 PF07126 Cell-division protein ZapC J4N40_08405 PF10672 S-adenosylmethionine-dependent methyltransferase J4N40_08405 PF02926 THUMP domain J4N40_08405 PF01170 Putative RNA methylase family UPF0020 J4N40_08415 PF12848 ABC transporter J4N40_08415 PF16326 ABC transporter C-terminal domain J4N40_08415 PF00005 ABC transporter J4N40_08425 PF04957 Ribosome modulation factor J4N40_08430 PF07977 FabA-like domain J4N40_08435 PF13654 AAA domain J4N40_08435 PF05362 Lon protease (S16) C-terminal proteolytic domain J4N40_08440 PF06303 MatP N-terminal domain J4N40_08440 PF17414 MatP C-terminal ribbon-helix-helix domain J4N40_08465 PF00512 His Kinase A (phospho-acceptor) domain J4N40_08465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_08465 PF00072 Response regulator receiver domain J4N40_08465 PF09308 LuxQ, periplasmic J4N40_08480 PF00115 Cytochrome C and Quinol oxidase polypeptide I J4N40_08495 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J4N40_08495 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP J4N40_08505 PF00403 Heavy-metal-associated domain J4N40_08520 PF13545 Crp-like helix-turn-helix domain J4N40_08520 PF00027 Cyclic nucleotide-binding domain J4N40_08525 PF00582 Universal stress protein family J4N40_08530 PF01171 PP-loop family J4N40_08550 PF00005 ABC transporter J4N40_08550 PF08402 TOBE domain J4N40_08555 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_08560 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_08565 PF13416 Bacterial extracellular solute-binding protein J4N40_08570 PF13416 Bacterial extracellular solute-binding protein J4N40_08575 PF02146 Sir2 family J4N40_08585 PF00909 Ammonium Transporter Family J4N40_08675 PF05593 RHS Repeat J4N40_08675 PF03527 RHS protein J4N40_08690 PF13247 4Fe-4S dicluster domain J4N40_08695 PF01568 Molydopterin dinucleotide binding domain J4N40_08695 PF00384 Molybdopterin oxidoreductase J4N40_08695 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J4N40_08705 PF02613 Nitrate reductase delta subunit J4N40_08725 PF02634 FdhD/NarQ family J4N40_08730 PF00005 ABC transporter J4N40_08730 PF12848 ABC transporter J4N40_08735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_08735 PF00512 His Kinase A (phospho-acceptor) domain J4N40_08740 PF00072 Response regulator receiver domain J4N40_08740 PF00158 Sigma-54 interaction domain J4N40_08740 PF02954 Bacterial regulatory protein, Fis family J4N40_08745 PF12849 PBP superfamily domain J4N40_08750 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_08755 PF00005 ABC transporter J4N40_08755 PF08402 TOBE domain J4N40_08760 PF12804 MobA-like NTP transferase domain J4N40_08765 PF00994 Probable molybdopterin binding domain J4N40_08765 PF03454 MoeA C-terminal region (domain IV) J4N40_08765 PF03453 MoeA N-terminal region (domain I and II) J4N40_08775 PF00480 ROK family J4N40_08780 PF03942 DTW domain J4N40_08810 PF00672 HAMP domain J4N40_08810 PF12729 Four helix bundle sensory module for signal transduction J4N40_08810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N40_08815 PF00877 NlpC/P60 family J4N40_08825 PF00990 Diguanylate cyclase, GGDEF domain J4N40_08825 PF05230 MASE2 domain J4N40_08830 PF00072 Response regulator receiver domain J4N40_08830 PF01339 CheB methylesterase J4N40_08835 PF03881 Fructosamine kinase J4N40_08845 PF00677 Lumazine binding domain J4N40_08850 PF01554 MatE J4N40_08860 PF01068 ATP dependent DNA ligase domain J4N40_08860 PF14743 DNA ligase OB-like domain J4N40_08865 PF01740 STAS domain J4N40_08875 PF02563 Polysaccharide biosynthesis/export protein J4N40_08875 PF10531 SLBB domain J4N40_08890 PF02954 Bacterial regulatory protein, Fis family J4N40_08890 PF00158 Sigma-54 interaction domain J4N40_08890 PF00072 Response regulator receiver domain J4N40_08895 PF00534 Glycosyl transferases group 1 J4N40_08895 PF13439 Glycosyltransferase Family 4 J4N40_08900 PF13439 Glycosyltransferase Family 4 J4N40_08900 PF00534 Glycosyl transferases group 1 J4N40_08930 PF13439 Glycosyltransferase Family 4 J4N40_08930 PF00534 Glycosyl transferases group 1 J4N40_08940 PF02397 Bacterial sugar transferase J4N40_08950 PF02028 BCCT, betaine/carnitine/choline family transporter J4N40_08965 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold J4N40_08965 PF00271 Helicase conserved C-terminal domain J4N40_08965 PF04408 Helicase associated domain (HA2) J4N40_08965 PF11898 Domain of unknown function (DUF3418) J4N40_08965 PF00270 DEAD/DEAH box helicase J4N40_08970 PF02525 Flavodoxin-like fold J4N40_09005 PF00990 Diguanylate cyclase, GGDEF domain J4N40_09015 PF00012 Hsp70 protein J4N40_09020 PF00012 Hsp70 protein J4N40_09035 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J4N40_09035 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J4N40_09045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_09045 PF03466 LysR substrate binding domain J4N40_09055 PF07963 Prokaryotic N-terminal methylation motif J4N40_09055 PF08334 Type II secretion system (T2SS), protein G J4N40_09060 PF00664 ABC transporter transmembrane region J4N40_09060 PF00005 ABC transporter J4N40_09065 PF00005 ABC transporter J4N40_09065 PF00664 ABC transporter transmembrane region J4N40_09075 PF00593 TonB dependent receptor J4N40_09075 PF07715 TonB-dependent Receptor Plug Domain J4N40_09080 PF01032 FecCD transport family J4N40_09085 PF01497 Periplasmic binding protein J4N40_09090 PF00005 ABC transporter J4N40_09100 PF01966 HD domain J4N40_09100 PF11871 Domain of unknown function (DUF3391) J4N40_09105 PF03222 Tryptophan/tyrosine permease family J4N40_09110 PF00465 Iron-containing alcohol dehydrogenase J4N40_09115 PF01966 HD domain J4N40_09125 PF03741 Integral membrane protein TerC family J4N40_09135 PF04055 Radical SAM superfamily J4N40_09140 PF11230 Protein of unknown function (DUF3029) J4N40_09145 PF01810 LysE type translocator J4N40_09150 PF11871 Domain of unknown function (DUF3391) J4N40_09150 PF01966 HD domain J4N40_09155 PF03707 Bacterial signalling protein N terminal repeat J4N40_09155 PF00990 Diguanylate cyclase, GGDEF domain J4N40_09155 PF00563 EAL domain J4N40_09160 PF00072 Response regulator receiver domain J4N40_09160 PF02954 Bacterial regulatory protein, Fis family J4N40_09160 PF00158 Sigma-54 interaction domain J4N40_09165 PF00512 His Kinase A (phospho-acceptor) domain J4N40_09165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_09170 PF00939 Sodium:sulfate symporter transmembrane region J4N40_09190 PF00072 Response regulator receiver domain J4N40_09190 PF00990 Diguanylate cyclase, GGDEF domain J4N40_09195 PF03928 Haem-degrading J4N40_09200 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J4N40_09200 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J4N40_09205 PF00455 DeoR C terminal sensor domain J4N40_09205 PF08220 DeoR-like helix-turn-helix domain J4N40_09220 PF02321 Outer membrane efflux protein J4N40_09230 PF00664 ABC transporter transmembrane region J4N40_09230 PF00005 ABC transporter J4N40_09230 PF03412 Peptidase C39 family J4N40_09240 PF00884 Sulfatase J4N40_09245 PF00884 Sulfatase J4N40_09260 PF04055 Radical SAM superfamily J4N40_09260 PF13186 Iron-sulfur cluster-binding domain J4N40_09265 PF03781 Sulfatase-modifying factor enzyme 1 J4N40_09275 PF00884 Sulfatase J4N40_09280 PF00696 Amino acid kinase family J4N40_09280 PF13840 ACT domain J4N40_09285 PF06339 Ectoine synthase J4N40_09290 PF00202 Aminotransferase class-III J4N40_09295 PF00583 Acetyltransferase (GNAT) family J4N40_09300 PF02028 BCCT, betaine/carnitine/choline family transporter J4N40_09315 PF00005 ABC transporter J4N40_09315 PF00571 CBS domain J4N40_09320 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_09325 PF04069 Substrate binding domain of ABC-type glycine betaine transport system J4N40_09330 PF00884 Sulfatase J4N40_09355 PF01235 Sodium:alanine symporter family J4N40_09365 PF01810 LysE type translocator J4N40_09370 PF02074 Carboxypeptidase Taq (M32) metallopeptidase J4N40_09415 PF17152 Periplasmic sensor domain J4N40_09415 PF00990 Diguanylate cyclase, GGDEF domain J4N40_09470 PF13195 Protein of unknown function (DUF4011) J4N40_09470 PF13087 AAA domain J4N40_09470 PF13086 AAA domain J4N40_09470 PF13086 AAA domain J4N40_09470 PF13087 AAA domain J4N40_09470 PF13195 Protein of unknown function (DUF4011) J4N40_09495 PF00816 H-NS histone family J4N40_09505 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal J4N40_09505 PF01926 50S ribosome-binding GTPase J4N40_09510 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal J4N40_09510 PF01926 50S ribosome-binding GTPase J4N40_09550 PF07508 Recombinase J4N40_09550 PF00239 Resolvase, N terminal domain J4N40_09550 PF13408 Recombinase zinc beta ribbon domain J4N40_09585 PF02074 Carboxypeptidase Taq (M32) metallopeptidase J4N40_09590 PF03279 Bacterial lipid A biosynthesis acyltransferase J4N40_09595 PF00893 Small Multidrug Resistance protein J4N40_09605 PF04204 Homoserine O-succinyltransferase J4N40_09620 PF00990 Diguanylate cyclase, GGDEF domain J4N40_09620 PF00563 EAL domain J4N40_09620 PF03707 Bacterial signalling protein N terminal repeat J4N40_09625 PF00072 Response regulator receiver domain J4N40_09625 PF00672 HAMP domain J4N40_09625 PF01627 Hpt domain J4N40_09625 PF00512 His Kinase A (phospho-acceptor) domain J4N40_09625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_09625 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J4N40_09650 PF04237 YjbR J4N40_09655 PF01047 MarR family J4N40_09665 PF00563 EAL domain J4N40_09665 PF12792 CSS motif domain associated with EAL J4N40_09670 PF00202 Aminotransferase class-III J4N40_09675 PF00171 Aldehyde dehydrogenase family J4N40_09680 PF04371 Porphyromonas-type peptidyl-arginine deiminase J4N40_09685 PF00795 Carbon-nitrogen hydrolase J4N40_09690 PF01266 FAD dependent oxidoreductase J4N40_09695 PF00171 Aldehyde dehydrogenase family J4N40_09700 PF01381 Helix-turn-helix J4N40_09700 PF07883 Cupin domain J4N40_09705 PF07722 Peptidase C26 J4N40_09710 PF00120 Glutamine synthetase, catalytic domain J4N40_09715 PF03553 Na+/H+ antiporter family J4N40_09870 PF14497 Glutathione S-transferase, C-terminal domain J4N40_09870 PF02798 Glutathione S-transferase, N-terminal domain J4N40_09880 PF04209 homogentisate 1,2-dioxygenase J4N40_09885 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N40_09890 PF07687 Peptidase dimerisation domain J4N40_09890 PF01546 Peptidase family M20/M25/M40 J4N40_09895 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N40_09900 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_09905 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_09905 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N40_09910 PF00005 ABC transporter J4N40_09910 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N40_09915 PF00005 ABC transporter J4N40_09915 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N40_09925 PF01752 Collagenase J4N40_09925 PF08453 Peptidase family M9 N-terminal J4N40_09935 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_09940 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_09945 PF08402 TOBE domain J4N40_09945 PF00005 ABC transporter J4N40_09950 PF00701 Dihydrodipicolinate synthetase family J4N40_09955 PF02423 Ornithine cyclodeaminase/mu-crystallin family J4N40_09965 PF05430 S-adenosyl-L-methionine-dependent methyltransferase J4N40_09965 PF01266 FAD dependent oxidoreductase J4N40_09970 PF05544 Proline racemase J4N40_09975 PF00171 Aldehyde dehydrogenase family J4N40_09980 PF00392 Bacterial regulatory proteins, gntR family J4N40_10000 PF05971 RNA methyltransferase J4N40_10005 PF01863 Protein of unknown function DUF45 J4N40_10015 PF03466 LysR substrate binding domain J4N40_10015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_10035 PF00005 ABC transporter J4N40_10040 PF01032 FecCD transport family J4N40_10045 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family J4N40_10060 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase J4N40_10065 PF02654 Cobalamin-5-phosphate synthase J4N40_10070 PF02277 Phosphoribosyltransferase J4N40_10080 PF00375 Sodium:dicarboxylate symporter family J4N40_10085 PF08411 Exonuclease C-terminal J4N40_10085 PF00929 Exonuclease J4N40_10090 PF03788 LrgA family J4N40_10095 PF04172 LrgB-like family J4N40_10100 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J4N40_10100 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region J4N40_10105 PF02222 ATP-grasp domain J4N40_10110 PF05724 Thiopurine S-methyltransferase (TPMT) J4N40_10120 PF00216 Bacterial DNA-binding protein J4N40_10130 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain J4N40_10130 PF01588 Putative tRNA binding domain J4N40_10130 PF03147 Ferredoxin-fold anticodon binding domain J4N40_10130 PF03483 B3/4 domain J4N40_10130 PF03484 tRNA synthetase B5 domain J4N40_10135 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain J4N40_10135 PF01409 tRNA synthetases class II core domain (F) J4N40_10165 PF01906 Putative heavy-metal-binding J4N40_10170 PF00453 Ribosomal protein L20 J4N40_10175 PF01632 Ribosomal protein L35 J4N40_10180 PF05198 Translation initiation factor IF-3, N-terminal domain J4N40_10180 PF00707 Translation initiation factor IF-3, C-terminal domain J4N40_10185 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J4N40_10185 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J4N40_10185 PF03129 Anticodon binding domain J4N40_10185 PF02824 TGS domain J4N40_10200 PF00392 Bacterial regulatory proteins, gntR family J4N40_10200 PF07702 UTRA domain J4N40_10205 PF01979 Amidohydrolase family J4N40_10210 PF00491 Arginase family J4N40_10215 PF01175 Urocanase Rossmann-like domain J4N40_10215 PF17392 Urocanase C-terminal domain J4N40_10215 PF17391 Urocanase N-terminal domain J4N40_10220 PF00221 Aromatic amino acid lyase J4N40_10230 PF04191 Phospholipid methyltransferase J4N40_10235 PF13183 4Fe-4S dicluster domain J4N40_10235 PF02913 FAD linked oxidases, C-terminal domain J4N40_10235 PF01565 FAD binding domain J4N40_10250 PF00691 OmpA family J4N40_10250 PF05736 OprF membrane domain J4N40_10270 PF01259 SAICAR synthetase J4N40_10275 PF09423 PhoD-like phosphatase J4N40_10275 PF16655 PhoD-like phosphatase, N-terminal domain J4N40_10285 PF00270 DEAD/DEAH box helicase J4N40_10285 PF11898 Domain of unknown function (DUF3418) J4N40_10285 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold J4N40_10285 PF00271 Helicase conserved C-terminal domain J4N40_10285 PF04408 Helicase associated domain (HA2) J4N40_10290 PF00390 Malic enzyme, N-terminal domain J4N40_10290 PF03949 Malic enzyme, NAD binding domain J4N40_10295 PF02698 DUF218 domain J4N40_10300 PF00939 Sodium:sulfate symporter transmembrane region J4N40_10305 PF00990 Diguanylate cyclase, GGDEF domain J4N40_10305 PF00072 Response regulator receiver domain J4N40_10315 PF00266 Aminotransferase class-V J4N40_10325 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N40_10330 PF00664 ABC transporter transmembrane region J4N40_10330 PF00005 ABC transporter J4N40_10335 PF00664 ABC transporter transmembrane region J4N40_10335 PF00005 ABC transporter J4N40_10340 PF00291 Pyridoxal-phosphate dependent enzyme J4N40_10345 PF00266 Aminotransferase class-V J4N40_10355 PF00512 His Kinase A (phospho-acceptor) domain J4N40_10355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_10355 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N40_10370 PF04994 TfoX C-terminal domain J4N40_10370 PF04993 TfoX N-terminal domain J4N40_10380 PF03956 Lysine exporter LysO J4N40_10390 PF00282 Pyridoxal-dependent decarboxylase conserved domain J4N40_10395 PF01380 SIS domain J4N40_10395 PF01418 Helix-turn-helix domain, rpiR family J4N40_10400 PF00465 Iron-containing alcohol dehydrogenase J4N40_10405 PF00462 Glutaredoxin J4N40_10410 PF02080 TrkA-C domain J4N40_10410 PF06826 Predicted Permease Membrane Region J4N40_10415 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase J4N40_10415 PF12241 Trans-2-enoyl-CoA reductase catalytic region J4N40_10415 PF07055 Enoyl reductase FAD binding domain J4N40_10445 PF00005 ABC transporter J4N40_10450 PF01554 MatE J4N40_10455 PF11066 Protein of unknown function (DUF2867) J4N40_10455 PF13460 NAD(P)H-binding J4N40_10465 PF07690 Major Facilitator Superfamily J4N40_10485 PF00072 Response regulator receiver domain J4N40_10485 PF00486 Transcriptional regulatory protein, C terminal J4N40_10490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_10495 PF01386 Ribosomal L25p family J4N40_10505 PF02872 5'-nucleotidase, C-terminal domain J4N40_10505 PF00149 Calcineurin-like phosphoesterase J4N40_10515 PF06945 Protein of unknown function (DUF1289) J4N40_10525 PF13416 Bacterial extracellular solute-binding protein J4N40_10530 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_10535 PF00005 ABC transporter J4N40_10540 PF01066 CDP-alcohol phosphatidyltransferase J4N40_10550 PF01590 GAF domain J4N40_10550 PF00158 Sigma-54 interaction domain J4N40_10555 PF03063 Prismane/CO dehydrogenase family J4N40_10560 PF00175 Oxidoreductase NAD-binding domain J4N40_10560 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N40_10560 PF00970 Oxidoreductase FAD-binding domain J4N40_10570 PF00849 RNA pseudouridylate synthase J4N40_10575 PF00209 Sodium:neurotransmitter symporter family J4N40_10580 PF13091 PLD-like domain J4N40_10580 PF13396 Phospholipase_D-nuclease N-terminal J4N40_10585 PF01053 Cys/Met metabolism PLP-dependent enzyme J4N40_10590 PF00561 alpha/beta hydrolase fold J4N40_10595 PF03280 Proteobacterial lipase chaperone protein J4N40_10600 PF03352 Methyladenine glycosylase J4N40_10605 PF00873 AcrB/AcrD/AcrF family J4N40_10610 PF13533 Biotin-lipoyl like J4N40_10620 PF04024 PspC domain J4N40_10625 PF06667 Phage shock protein B J4N40_10630 PF04012 PspA/IM30 family J4N40_10635 PF00158 Sigma-54 interaction domain J4N40_10635 PF02954 Bacterial regulatory protein, Fis family J4N40_10640 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N40_10645 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_10650 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_10650 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N40_10655 PF00005 ABC transporter J4N40_10655 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N40_10660 PF00005 ABC transporter J4N40_10670 PF01368 DHH family J4N40_10670 PF02833 DHHA2 domain J4N40_10680 PF16874 Glycosyl hydrolase family 36 C-terminal domain J4N40_10680 PF16875 Glycosyl hydrolase family 36 N-terminal domain J4N40_10685 PF00384 Molybdopterin oxidoreductase J4N40_10685 PF18364 Molybdopterin oxidoreductase N-terminal domain J4N40_10685 PF01568 Molydopterin dinucleotide binding domain J4N40_10690 PF03264 NapC/NirT cytochrome c family, N-terminal region J4N40_10695 PF06796 Periplasmic nitrate reductase protein NapE J4N40_10700 PF03649 Uncharacterised protein family (UPF0014) J4N40_10710 PF01226 Formate/nitrite transporter J4N40_10735 PF02698 DUF218 domain J4N40_10740 PF00265 Thymidine kinase J4N40_10745 PF09190 DALR domain J4N40_10745 PF01406 tRNA synthetases class I (C) catalytic domain J4N40_10750 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J4N40_10755 PF00149 Calcineurin-like phosphoesterase J4N40_10760 PF08668 HDOD domain J4N40_10760 PF00563 EAL domain J4N40_10765 PF02810 SEC-C motif J4N40_10770 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase J4N40_10770 PF01502 Phosphoribosyl-AMP cyclohydrolase J4N40_10775 PF00977 Histidine biosynthesis protein J4N40_10780 PF00977 Histidine biosynthesis protein J4N40_10785 PF00117 Glutamine amidotransferase class-I J4N40_10790 PF00475 Imidazoleglycerol-phosphate dehydratase J4N40_10790 PF08645 Polynucleotide kinase 3 phosphatase J4N40_10795 PF00155 Aminotransferase class I and II J4N40_10800 PF00815 Histidinol dehydrogenase J4N40_10805 PF01634 ATP phosphoribosyltransferase J4N40_10805 PF08029 HisG, C-terminal domain J4N40_10810 PF03553 Na+/H+ antiporter family J4N40_10815 PF00816 H-NS histone family J4N40_10820 PF00294 pfkB family carbohydrate kinase J4N40_10835 PF04356 Protein of unknown function (DUF489) J4N40_10840 PF08328 Adenylosuccinate lyase C-terminal J4N40_10840 PF00206 Lyase J4N40_10850 PF16036 Chalcone isomerase-like J4N40_10875 PF00106 short chain dehydrogenase J4N40_10885 PF01435 Peptidase family M48 J4N40_10900 PF08241 Methyltransferase domain J4N40_10905 PF00155 Aminotransferase class I and II J4N40_10910 PF06968 Biotin and Thiamin Synthesis associated domain J4N40_10910 PF04055 Radical SAM superfamily J4N40_10915 PF00202 Aminotransferase class-III J4N40_10920 PF01258 Prokaryotic dksA/traR C4-type zinc finger J4N40_10935 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J4N40_10935 PF02403 Seryl-tRNA synthetase N-terminal domain J4N40_10940 PF16193 AAA C-terminal domain J4N40_10940 PF12002 MgsA AAA+ ATPase C terminal J4N40_10940 PF00004 ATPase family associated with various cellular activities (AAA) J4N40_10945 PF03548 Outer membrane lipoprotein carrier protein LolA J4N40_10950 PF17854 FtsK alpha domain J4N40_10950 PF09397 Ftsk gamma domain J4N40_10950 PF13491 4TM region of DNA translocase FtsK/SpoIIIE J4N40_10950 PF01580 FtsK/SpoIIIE family J4N40_10955 PF01037 Lrp/AsnC ligand binding domain J4N40_10960 PF01262 Alanine dehydrogenase/PNT, C-terminal domain J4N40_10960 PF05222 Alanine dehydrogenase/PNT, N-terminal domain J4N40_10970 PF03466 LysR substrate binding domain J4N40_10970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_10980 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) J4N40_10985 PF00672 HAMP domain J4N40_10985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N40_10995 PF03372 Endonuclease/Exonuclease/phosphatase family J4N40_11005 PF00579 tRNA synthetases class I (W and Y) J4N40_11020 PF00873 AcrB/AcrD/AcrF family J4N40_11025 PF00529 HlyD membrane-fusion protein of T1SS J4N40_11025 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N40_11030 PF17200 Single Cache domain 2 J4N40_11030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N40_11030 PF00672 HAMP domain J4N40_11045 PF01654 Cytochrome bd terminal oxidase subunit I J4N40_11050 PF02322 Cytochrome bd terminal oxidase subunit II J4N40_11060 PF06610 L-alanine exporter J4N40_11065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_11065 PF00512 His Kinase A (phospho-acceptor) domain J4N40_11065 PF09308 LuxQ, periplasmic J4N40_11065 PF00072 Response regulator receiver domain J4N40_11075 PF03738 Glutathionylspermidine synthase preATP-grasp J4N40_11085 PF03994 Domain of Unknown Function (DUF350) J4N40_11095 PF02445 Quinolinate synthetase A protein J4N40_11100 PF16331 TolA binding protein trimerisation J4N40_11100 PF13174 Tetratricopeptide repeat J4N40_11105 PF00691 OmpA family J4N40_11110 PF04052 TolB amino-terminal domain J4N40_11110 PF07676 WD40-like Beta Propeller Repeat J4N40_11120 PF02472 Biopolymer transport protein ExbD/TolR J4N40_11125 PF01618 MotA/TolQ/ExbB proton channel family J4N40_11130 PF03061 Thioesterase superfamily J4N40_11140 PF08173 Membrane bound YbgT-like protein J4N40_11145 PF02322 Cytochrome bd terminal oxidase subunit II J4N40_11150 PF01654 Cytochrome bd terminal oxidase subunit I J4N40_11155 PF17864 RuvB AAA lid domain J4N40_11155 PF05491 RuvB C-terminal winged helix domain J4N40_11155 PF05496 Holliday junction DNA helicase RuvB P-loop domain J4N40_11160 PF01330 RuvA N terminal domain J4N40_11160 PF07499 RuvA, C-terminal domain J4N40_11165 PF02075 Crossover junction endodeoxyribonuclease RuvC J4N40_11170 PF01709 Transcriptional regulator J4N40_11175 PF00152 tRNA synthetases class II (D, K and N) J4N40_11175 PF02938 GAD domain J4N40_11175 PF01336 OB-fold nucleic acid binding domain J4N40_11180 PF01904 Protein of unknown function DUF72 J4N40_11185 PF13649 Methyltransferase domain J4N40_11190 PF08003 Protein of unknown function (DUF1698) J4N40_11195 PF08443 RimK-like ATP-grasp domain J4N40_11195 PF18030 RimK PreATP-grasp domain J4N40_11215 PF04310 MukB N-terminal J4N40_11215 PF16330 MukB hinge domain J4N40_11220 PF04288 MukE-like family J4N40_11225 PF17192 MukF middle domain J4N40_11225 PF17193 MukF C-terminal domain J4N40_11225 PF03882 MukF winged-helix domain J4N40_11230 PF13847 Methyltransferase domain J4N40_11235 PF02698 DUF218 domain J4N40_11240 PF00072 Response regulator receiver domain J4N40_11240 PF00486 Transcriptional regulatory protein, C terminal J4N40_11245 PF02613 Nitrate reductase delta subunit J4N40_11250 PF00356 Bacterial regulatory proteins, lacI family J4N40_11255 PF04994 TfoX C-terminal domain J4N40_11255 PF04993 TfoX N-terminal domain J4N40_11275 PF08323 Starch synthase catalytic domain J4N40_11275 PF00534 Glycosyl transferases group 1 J4N40_11280 PF00483 Nucleotidyl transferase J4N40_11285 PF01131 DNA topoisomerase J4N40_11285 PF08272 Topoisomerase I zinc-ribbon-like J4N40_11285 PF01751 Toprim domain J4N40_11285 PF01396 Topoisomerase DNA binding C4 zinc finger J4N40_11290 PF10692 Protein of unknown function (DUF2498) J4N40_11295 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J4N40_11305 PF03588 Leucyl/phenylalanyl-tRNA protein transferase J4N40_11310 PF04377 Arginine-tRNA-protein transferase, C terminus J4N40_11310 PF04376 Arginine-tRNA-protein transferase, N terminus J4N40_11315 PF01176 Translation initiation factor 1A / IF-1 J4N40_11320 PF17871 AAA lid domain J4N40_11320 PF00004 ATPase family associated with various cellular activities (AAA) J4N40_11320 PF07724 AAA domain (Cdc48 subfamily) J4N40_11320 PF02861 Clp amino terminal domain, pathogenicity island component J4N40_11320 PF10431 C-terminal, D2-small domain, of ClpB protein J4N40_11325 PF02617 ATP-dependent Clp protease adaptor protein ClpS J4N40_11330 PF00313 'Cold-shock' DNA-binding domain J4N40_11335 PF03971 Monomeric isocitrate dehydrogenase J4N40_11340 PF00849 RNA pseudouridylate synthase J4N40_11345 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) J4N40_11355 PF06733 DEAD_2 J4N40_11355 PF13307 Helicase C-terminal domain J4N40_11360 PF01925 Sulfite exporter TauE/SafE J4N40_11365 PF07445 Primosomal replication protein priC J4N40_11370 PF10689 Protein of unknown function (DUF2496) J4N40_11375 PF03372 Endonuclease/Exonuclease/phosphatase family J4N40_11385 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_11390 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_11395 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N40_11400 PF00005 ABC transporter J4N40_11415 PF02901 Pyruvate formate lyase-like J4N40_11415 PF01228 Glycine radical J4N40_11425 PF04055 Radical SAM superfamily J4N40_11435 PF03887 YfbU domain J4N40_11440 PF08298 PrkA AAA domain J4N40_11440 PF06798 PrkA serine protein kinase C-terminal domain J4N40_11445 PF04285 Protein of unknown function (DUF444) J4N40_11450 PF04293 SpoVR like protein J4N40_11455 PF02348 Cytidylyltransferase J4N40_11460 PF03966 Trm112p-like protein J4N40_11465 PF02606 Tetraacyldisaccharide-1-P 4'-kinase J4N40_11470 PF00664 ABC transporter transmembrane region J4N40_11470 PF00005 ABC transporter J4N40_11480 PF03772 Competence protein J4N40_11480 PF13567 Domain of unknown function (DUF4131) J4N40_11480 PF00753 Metallo-beta-lactamase superfamily J4N40_11490 PF02687 FtsX-like permease family J4N40_11490 PF12704 MacB-like periplasmic core domain J4N40_11495 PF00005 ABC transporter J4N40_11500 PF12704 MacB-like periplasmic core domain J4N40_11500 PF02687 FtsX-like permease family J4N40_11510 PF02559 CarD-like/TRCF domain J4N40_11510 PF00270 DEAD/DEAH box helicase J4N40_11510 PF00271 Helicase conserved C-terminal domain J4N40_11510 PF03461 TRCF domain J4N40_11510 PF17757 UvrB interaction domain J4N40_11525 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N40_11530 PF05728 Uncharacterised protein family (UPF0227) J4N40_11535 PF01636 Phosphotransferase enzyme family J4N40_11540 PF13036 Peptidoglycan-synthase activator LpoB J4N40_11540 PF08139 Prokaryotic membrane lipoprotein lipid attachment site J4N40_11555 PF01230 HIT domain J4N40_11560 PF00672 HAMP domain J4N40_11560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N40_11570 PF01048 Phosphorylase superfamily J4N40_11575 PF00403 Heavy-metal-associated domain J4N40_11580 PF00571 CBS domain J4N40_11580 PF00478 IMP dehydrogenase / GMP reductase domain J4N40_11585 PF08032 RNA 2'-O ribose methyltransferase substrate binding J4N40_11585 PF00588 SpoU rRNA Methylase family J4N40_11595 PF00990 Diguanylate cyclase, GGDEF domain J4N40_11605 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J4N40_11610 PF09619 Type III secretion system lipoprotein chaperone (YscW) J4N40_11625 PF01037 Lrp/AsnC ligand binding domain J4N40_11625 PF13404 AsnC-type helix-turn-helix domain J4N40_11630 PF00291 Pyridoxal-phosphate dependent enzyme J4N40_11645 PF00873 AcrB/AcrD/AcrF family J4N40_11650 PF00529 HlyD membrane-fusion protein of T1SS J4N40_11650 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N40_11695 PF07690 Major Facilitator Superfamily J4N40_11700 PF03601 Conserved hypothetical protein 698 J4N40_11710 PF00501 AMP-binding enzyme J4N40_11710 PF13193 AMP-binding enzyme C-terminal domain J4N40_11715 PF13378 Enolase C-terminal domain-like J4N40_11720 PF00378 Enoyl-CoA hydratase/isomerase J4N40_11725 PF12697 Alpha/beta hydrolase family J4N40_11730 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J4N40_11730 PF16582 Middle domain of thiamine pyrophosphate J4N40_11730 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J4N40_11735 PF00425 chorismate binding enzyme J4N40_11740 PF00155 Aminotransferase class I and II J4N40_11750 PF13286 Phosphohydrolase-associated domain J4N40_11750 PF01966 HD domain J4N40_11770 PF13145 PPIC-type PPIASE domain J4N40_11775 PF00216 Bacterial DNA-binding protein J4N40_11780 PF00004 ATPase family associated with various cellular activities (AAA) J4N40_11780 PF02190 ATP-dependent protease La (LON) substrate-binding domain J4N40_11780 PF05362 Lon protease (S16) C-terminal proteolytic domain J4N40_11785 PF07724 AAA domain (Cdc48 subfamily) J4N40_11785 PF06689 ClpX C4-type zinc finger J4N40_11785 PF10431 C-terminal, D2-small domain, of ClpB protein J4N40_11790 PF00574 Clp protease J4N40_11795 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N40_11795 PF05698 Bacterial trigger factor protein (TF) C-terminus J4N40_11795 PF05697 Bacterial trigger factor protein (TF) J4N40_11800 PF00512 His Kinase A (phospho-acceptor) domain J4N40_11800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_11800 PF02743 Cache domain J4N40_11805 PF00158 Sigma-54 interaction domain J4N40_11805 PF00072 Response regulator receiver domain J4N40_11805 PF02954 Bacterial regulatory protein, Fis family J4N40_11810 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J4N40_11815 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component J4N40_11820 PF03480 Bacterial extracellular solute-binding protein, family 7 J4N40_11825 PF02696 Uncharacterized ACR, YdiU/UPF0061 family J4N40_11840 PF02386 Cation transport protein J4N40_11845 PF02080 TrkA-C domain J4N40_11845 PF02254 TrkA-N domain J4N40_11850 PF00270 DEAD/DEAH box helicase J4N40_11850 PF00271 Helicase conserved C-terminal domain J4N40_11860 PF04820 Tryptophan halogenase J4N40_11885 PF00550 Phosphopantetheine attachment site J4N40_11890 PF00550 Phosphopantetheine attachment site J4N40_11905 PF07977 FabA-like domain J4N40_11910 PF00535 Glycosyl transferase family 2 J4N40_11915 PF00221 Aromatic amino acid lyase J4N40_11940 PF02801 Beta-ketoacyl synthase, C-terminal domain J4N40_11940 PF00109 Beta-ketoacyl synthase, N-terminal domain J4N40_11945 PF07977 FabA-like domain J4N40_11955 PF02801 Beta-ketoacyl synthase, C-terminal domain J4N40_11955 PF00109 Beta-ketoacyl synthase, N-terminal domain J4N40_11965 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain J4N40_11965 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain J4N40_11970 PF01773 Na+ dependent nucleoside transporter N-terminus J4N40_11970 PF07662 Na+ dependent nucleoside transporter C-terminus J4N40_11970 PF07670 Nucleoside recognition J4N40_11975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_11975 PF03466 LysR substrate binding domain J4N40_11980 PF13406 Transglycosylase SLT domain J4N40_11985 PF05166 YcgL domain J4N40_11990 PF05209 Septum formation inhibitor MinC, N-terminal domain J4N40_11990 PF03775 Septum formation inhibitor MinC, C-terminal domain J4N40_11995 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J4N40_12000 PF03776 Septum formation topological specificity factor MinE J4N40_12005 PF01612 3'-5' exonuclease J4N40_12005 PF00570 HRDC domain J4N40_12010 PF00501 AMP-binding enzyme J4N40_12010 PF13193 AMP-binding enzyme C-terminal domain J4N40_12015 PF00561 alpha/beta hydrolase fold J4N40_12020 PF03843 Outer membrane lipoprotein Slp family J4N40_12030 PF00814 Glycoprotease family J4N40_12035 PF04851 Type III restriction enzyme, res subunit J4N40_12035 PF13307 Helicase C-terminal domain J4N40_12040 PF01842 ACT domain J4N40_12040 PF00551 Formyl transferase J4N40_12045 PF06185 YecM protein J4N40_12050 PF03485 Arginyl tRNA synthetase N terminal domain J4N40_12050 PF05746 DALR anticodon binding domain J4N40_12050 PF00750 tRNA synthetases class I (R) J4N40_12070 PF07670 Nucleoside recognition J4N40_12070 PF02421 Ferrous iron transport protein B J4N40_12070 PF07664 Ferrous iron transport protein B C terminus J4N40_12070 PF17910 FeoB cytosolic helical domain J4N40_12075 PF04023 FeoA domain J4N40_12080 PF02311 AraC-like ligand binding domain J4N40_12080 PF12833 Helix-turn-helix domain J4N40_12085 PF01297 Zinc-uptake complex component A periplasmic J4N40_12090 PF00005 ABC transporter J4N40_12095 PF00950 ABC 3 transport family J4N40_12100 PF02629 CoA binding domain J4N40_12100 PF00549 CoA-ligase J4N40_12105 PF08442 ATP-grasp domain J4N40_12105 PF00549 CoA-ligase J4N40_12110 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J4N40_12110 PF00364 Biotin-requiring enzyme J4N40_12110 PF02817 e3 binding domain J4N40_12115 PF16870 2-oxoglutarate dehydrogenase C-terminal J4N40_12115 PF00676 Dehydrogenase E1 component J4N40_12115 PF16078 2-oxoglutarate dehydrogenase N-terminus J4N40_12115 PF02779 Transketolase, pyrimidine binding domain J4N40_12120 PF13085 2Fe-2S iron-sulfur cluster binding domain J4N40_12125 PF02910 Fumarate reductase flavoprotein C-term J4N40_12125 PF00890 FAD binding domain J4N40_12130 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit J4N40_12135 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit J4N40_12140 PF00285 Citrate synthase, C-terminal domain J4N40_12145 PF01784 NIF3 (NGG1p interacting factor 3) J4N40_12155 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J4N40_12155 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J4N40_12155 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J4N40_12155 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J4N40_12160 PF17206 SeqA protein N-terminal domain J4N40_12160 PF03925 SeqA protein C-terminal domain J4N40_12165 PF12697 Alpha/beta hydrolase family J4N40_12175 PF00258 Flavodoxin J4N40_12185 PF01475 Ferric uptake regulator family J4N40_12190 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain J4N40_12190 PF00749 tRNA synthetases class I (E and Q), catalytic domain J4N40_12195 PF02378 Phosphotransferase system, EIIC J4N40_12195 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 J4N40_12195 PF00367 phosphotransferase system, EIIB J4N40_12200 PF01979 Amidohydrolase family J4N40_12205 PF01047 MarR family J4N40_12205 PF00480 ROK family J4N40_12210 PF00999 Sodium/hydrogen exchanger family J4N40_12210 PF02254 TrkA-N domain J4N40_12215 PF00733 Asparagine synthase J4N40_12215 PF13537 Glutamine amidotransferase domain J4N40_12220 PF02357 Transcription termination factor nusG J4N40_12225 PF00854 POT family J4N40_12230 PF00762 Ferrochelatase J4N40_12235 PF05191 Adenylate kinase, active site lid J4N40_12240 PF00183 Hsp90 protein J4N40_12240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_12245 PF00486 Transcriptional regulatory protein, C terminal J4N40_12250 PF17323 Trans-membrane regulatory protein ToxS J4N40_12265 PF12850 Calcineurin-like phosphoesterase superfamily domain J4N40_12280 PF07556 Protein of unknown function (DUF1538) J4N40_12285 PF07556 Protein of unknown function (DUF1538) J4N40_12290 PF01370 NAD dependent epimerase/dehydratase family J4N40_12290 PF08338 Domain of unknown function (DUF1731) J4N40_12300 PF00085 Thioredoxin J4N40_12305 PF01145 SPFH domain / Band 7 family J4N40_12305 PF16200 C-terminal region of band_7 J4N40_12320 PF03573 outer membrane porin, OprD family J4N40_12325 PF03119 NAD-dependent DNA ligase C4 zinc finger domain J4N40_12325 PF03120 NAD-dependent DNA ligase OB-fold domain J4N40_12325 PF01653 NAD-dependent DNA ligase adenylation domain J4N40_12325 PF12826 Helix-hairpin-helix motif J4N40_12325 PF00533 BRCA1 C Terminus (BRCT) domain J4N40_12330 PF04354 ZipA, C-terminal FtsZ-binding domain J4N40_12340 PF00291 Pyridoxal-phosphate dependent enzyme J4N40_12345 PF00381 PTS HPr component phosphorylation site J4N40_12350 PF05524 PEP-utilising enzyme, N-terminal J4N40_12350 PF00391 PEP-utilising enzyme, mobile domain J4N40_12350 PF02896 PEP-utilising enzyme, TIM barrel domain J4N40_12355 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 J4N40_12360 PF00669 Bacterial flagellin N-terminal helical region J4N40_12360 PF00700 Bacterial flagellin C-terminal helical region J4N40_12360 PF07196 Flagellin hook IN motif J4N40_12365 PF07196 Flagellin hook IN motif J4N40_12365 PF00700 Bacterial flagellin C-terminal helical region J4N40_12365 PF00669 Bacterial flagellin N-terminal helical region J4N40_12370 PF00669 Bacterial flagellin N-terminal helical region J4N40_12370 PF07196 Flagellin hook IN motif J4N40_12370 PF00700 Bacterial flagellin C-terminal helical region J4N40_12375 PF00669 Bacterial flagellin N-terminal helical region J4N40_12380 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N40_12380 PF07196 Flagellin hook IN motif J4N40_12385 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase J4N40_12385 PF10135 Rod binding protein J4N40_12390 PF02119 Flagellar P-ring protein J4N40_12395 PF02107 Flagellar L-ring protein J4N40_12400 PF00460 Flagella basal body rod protein J4N40_12400 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N40_12405 PF00460 Flagella basal body rod protein J4N40_12405 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N40_12410 PF07559 Flagellar basal body protein FlaE J4N40_12410 PF00460 Flagella basal body rod protein J4N40_12410 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N40_12415 PF03963 Flagellar hook capping protein - N-terminal region J4N40_12415 PF13860 FlgD Ig-like domain J4N40_12415 PF13861 FlgD Tudor-like domain J4N40_12420 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N40_12420 PF00460 Flagella basal body rod protein J4N40_12425 PF00460 Flagella basal body rod protein J4N40_12430 PF01739 CheR methyltransferase, SAM binding domain J4N40_12430 PF03705 CheR methyltransferase, all-alpha domain J4N40_12435 PF01584 CheW-like domain J4N40_12435 PF00072 Response regulator receiver domain J4N40_12480 PF01389 OmpA-like transmembrane domain J4N40_12480 PF00691 OmpA family J4N40_12485 PF00749 tRNA synthetases class I (E and Q), catalytic domain J4N40_12490 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) J4N40_12495 PF13609 Gram-negative porin J4N40_12500 PF00403 Heavy-metal-associated domain J4N40_12515 PF03173 Putative carbohydrate binding domain J4N40_12515 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain J4N40_12515 PF02838 Glycosyl hydrolase family 20, domain 2 J4N40_12515 PF00728 Glycosyl hydrolase family 20, catalytic domain J4N40_12540 PF01713 Smr domain J4N40_12545 PF00849 RNA pseudouridylate synthase J4N40_12545 PF01479 S4 domain J4N40_12550 PF04073 Aminoacyl-tRNA editing domain J4N40_12555 PF00149 Calcineurin-like phosphoesterase J4N40_12555 PF02872 5'-nucleotidase, C-terminal domain J4N40_12560 PF00793 DAHP synthetase I family J4N40_12565 PF13369 Transglutaminase-like superfamily J4N40_12570 PF04247 Invasion gene expression up-regulator, SirB J4N40_12575 PF13847 Methyltransferase domain J4N40_12575 PF17827 PrmC N-terminal domain J4N40_12580 PF00472 RF-1 domain J4N40_12580 PF03462 PCRF domain J4N40_12585 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain J4N40_12585 PF01488 Shikimate / quinate 5-dehydrogenase J4N40_12585 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain J4N40_12590 PF03550 Outer membrane lipoprotein LolB J4N40_12595 PF00288 GHMP kinases N terminal domain J4N40_12595 PF08544 GHMP kinases C terminal J4N40_12600 PF14572 Phosphoribosyl synthetase-associated domain J4N40_12600 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase J4N40_12605 PF01195 Peptidyl-tRNA hydrolase J4N40_12610 PF01926 50S ribosome-binding GTPase J4N40_12610 PF06071 Protein of unknown function (DUF933) J4N40_12715 PF01494 FAD binding domain J4N40_12720 PF04055 Radical SAM superfamily J4N40_12720 PF01938 TRAM domain J4N40_12720 PF00919 Uncharacterized protein family UPF0004 J4N40_12725 PF02562 PhoH-like protein J4N40_12730 PF02130 Uncharacterized protein family UPF0054 J4N40_12735 PF03471 Transporter associated domain J4N40_12735 PF00571 CBS domain J4N40_12740 PF00795 Carbon-nitrogen hydrolase J4N40_12745 PF07295 Zinc-ribbon containing domain J4N40_12750 PF08264 Anticodon-binding domain of tRNA J4N40_12750 PF00133 tRNA synthetases class I (I, L, M and V) J4N40_12750 PF13603 Leucyl-tRNA synthetase, Domain 2 J4N40_12755 PF04390 Lipopolysaccharide-assembly J4N40_12760 PF14840 Processivity clamp loader gamma complex DNA pol III C-term J4N40_12760 PF06144 DNA polymerase III, delta subunit J4N40_12770 PF02590 Predicted SPOUT methyltransferase J4N40_12775 PF00905 Penicillin binding protein transpeptidase domain J4N40_12775 PF03717 Penicillin-binding Protein dimerisation domain J4N40_12780 PF01098 Cell cycle protein J4N40_12785 PF03330 Lytic transglycolase J4N40_12785 PF05036 Sporulation related domain J4N40_12790 PF07943 Penicillin-binding protein 5, C-terminal domain J4N40_12790 PF00768 D-alanyl-D-alanine carboxypeptidase J4N40_12795 PF04359 Protein of unknown function (DUF493) J4N40_12800 PF03099 Biotin/lipoate A/B protein ligase family J4N40_12805 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family J4N40_12805 PF04055 Radical SAM superfamily J4N40_12810 PF00464 Serine hydroxymethyltransferase J4N40_12815 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 J4N40_12815 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) J4N40_12830 PF16657 Maltogenic Amylase, C-terminal domain J4N40_12830 PF00128 Alpha amylase, catalytic domain J4N40_12835 PF02378 Phosphotransferase system, EIIC J4N40_12835 PF00367 phosphotransferase system, EIIB J4N40_12840 PF00356 Bacterial regulatory proteins, lacI family J4N40_12850 PF00005 ABC transporter J4N40_12850 PF09383 NIL domain J4N40_12855 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_12860 PF03180 NLPA lipoprotein J4N40_12865 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) J4N40_12870 PF07348 Syd protein (SUKH-2) J4N40_12875 PF14489 QueF-like protein J4N40_12875 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term J4N40_12885 PF00990 Diguanylate cyclase, GGDEF domain J4N40_12890 PF11892 Domain of unknown function (DUF3412) J4N40_12890 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases J4N40_12890 PF03641 Possible lysine decarboxylase J4N40_12895 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J4N40_12895 PF01367 5'-3' exonuclease, C-terminal SAM fold J4N40_12900 PF18125 RlmM ferredoxin-like domain J4N40_12900 PF01728 FtsJ-like methyltransferase J4N40_12905 PF04241 Protein of unknown function (DUF423) J4N40_12915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_12915 PF03466 LysR substrate binding domain J4N40_12920 PF02926 THUMP domain J4N40_12920 PF02568 Thiamine biosynthesis protein (ThiI) J4N40_12925 PF00691 OmpA family J4N40_12925 PF13677 Membrane MotB of proton-channel complex MotA/MotB J4N40_12930 PF01618 MotA/TolQ/ExbB proton channel family J4N40_12935 PF02609 Exonuclease VII small subunit J4N40_12940 PF00348 Polyprenyl synthetase J4N40_12945 PF02779 Transketolase, pyrimidine binding domain J4N40_12945 PF13292 1-deoxy-D-xylulose-5-phosphate synthase J4N40_12945 PF02780 Transketolase, C-terminal domain J4N40_12950 PF04608 Phosphatidylglycerophosphatase A J4N40_12955 PF00586 AIR synthase related protein, N-terminal domain J4N40_12955 PF02769 AIR synthase related protein, C-terminal domain J4N40_12960 PF01029 NusB family J4N40_12965 PF00885 6,7-dimethyl-8-ribityllumazine synthase J4N40_12970 PF00925 GTP cyclohydrolase II J4N40_12970 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase J4N40_12975 PF00677 Lumazine binding domain J4N40_12980 PF01872 RibD C-terminal domain J4N40_12980 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J4N40_12985 PF03477 ATP cone domain J4N40_12990 PF00171 Aldehyde dehydrogenase family J4N40_12995 PF00696 Amino acid kinase family J4N40_12995 PF01472 PUA domain J4N40_13000 PF07417 Sigma factor-binding transcriptional regulator Crl J4N40_13005 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) J4N40_13010 PF00156 Phosphoribosyl transferase domain J4N40_13015 PF00860 Permease family J4N40_13020 PF07687 Peptidase dimerisation domain J4N40_13020 PF01546 Peptidase family M20/M25/M40 J4N40_13035 PF07715 TonB-dependent Receptor Plug Domain J4N40_13035 PF00593 TonB dependent receptor J4N40_13050 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal J4N40_13050 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain J4N40_13050 PF02769 AIR synthase related protein, C-terminal domain J4N40_13055 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N40_13055 PF01464 Transglycosylase SLT domain J4N40_13060 PF14437 MafB19-like deaminase J4N40_13065 PF03806 AbgT putative transporter family J4N40_13095 PF00226 DnaJ domain J4N40_13095 PF01556 DnaJ C terminal domain J4N40_13095 PF00684 DnaJ central domain J4N40_13100 PF00012 Hsp70 protein J4N40_13105 PF00375 Sodium:dicarboxylate symporter family J4N40_13110 PF01025 GrpE J4N40_13115 PF01513 ATP-NAD kinase J4N40_13125 PF02463 RecF/RecN/SMC N terminal domain J4N40_13135 PF04355 SmpA / OmlA family J4N40_13140 PF03658 RnfH family Ubiquitin J4N40_13145 PF03364 Polyketide cyclase / dehydrase and lipid transport J4N40_13150 PF01668 SmpB protein J4N40_13170 PF03466 LysR substrate binding domain J4N40_13170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_13175 PF00583 Acetyltransferase (GNAT) family J4N40_13175 PF00795 Carbon-nitrogen hydrolase J4N40_13195 PF00202 Aminotransferase class-III J4N40_13200 PF01053 Cys/Met metabolism PLP-dependent enzyme J4N40_13210 PF01266 FAD dependent oxidoreductase J4N40_13215 PF01235 Sodium:alanine symporter family J4N40_13220 PF01184 GPR1/FUN34/yaaH family J4N40_13225 PF00704 Glycosyl hydrolases family 18 J4N40_13225 PF06483 Chitinase C J4N40_13230 PF03553 Na+/H+ antiporter family J4N40_13235 PF00958 GMP synthase C terminal domain J4N40_13235 PF00117 Glutamine amidotransferase class-I J4N40_13235 PF02540 NAD synthase J4N40_13240 PF00571 CBS domain J4N40_13240 PF00478 IMP dehydrogenase / GMP reductase domain J4N40_13245 PF02601 Exonuclease VII, large subunit J4N40_13245 PF13742 OB-fold nucleic acid binding domain J4N40_13260 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal J4N40_13260 PF01926 50S ribosome-binding GTPase J4N40_13265 PF13360 PQQ-like domain J4N40_13270 PF09976 Tetratricopeptide repeat-like domain J4N40_13275 PF03129 Anticodon binding domain J4N40_13275 PF13393 Histidyl-tRNA synthetase J4N40_13280 PF04551 GcpE protein J4N40_13285 PF13464 Domain of unknown function (DUF4115) J4N40_13290 PF04055 Radical SAM superfamily J4N40_13295 PF00334 Nucleoside diphosphate kinase J4N40_13300 PF00883 Cytosol aminopeptidase family, catalytic domain J4N40_13300 PF12404 Peptidase J4N40_13305 PF04384 Iron-sulphur cluster assembly J4N40_13310 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N40_13315 PF00012 Hsp70 protein J4N40_13320 PF00226 DnaJ domain J4N40_13320 PF07743 HSCB C-terminal oligomerisation domain J4N40_13325 PF01521 Iron-sulphur cluster biosynthesis J4N40_13330 PF01592 NifU-like N terminal domain J4N40_13335 PF00266 Aminotransferase class-V J4N40_13340 PF02082 Transcriptional regulator J4N40_13345 PF00588 SpoU rRNA Methylase family J4N40_13350 PF00459 Inositol monophosphatase family J4N40_13365 PF07549 SecD/SecF GG Motif J4N40_13365 PF02355 Protein export membrane protein J4N40_13370 PF13721 SecD export protein N-terminal TM region J4N40_13370 PF07549 SecD/SecF GG Motif J4N40_13370 PF02355 Protein export membrane protein J4N40_13375 PF02699 Preprotein translocase subunit J4N40_13380 PF01702 Queuine tRNA-ribosyltransferase J4N40_13385 PF02547 Queuosine biosynthesis protein J4N40_13395 PF00571 CBS domain J4N40_13400 PF00463 Isocitrate lyase family J4N40_13405 PF01274 Malate synthase J4N40_13410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_13410 PF03466 LysR substrate binding domain J4N40_13415 PF00578 AhpC/TSA family J4N40_13415 PF10417 C-terminal domain of 1-Cys peroxiredoxin J4N40_13420 PF03932 CutC family J4N40_13425 PF03976 Polyphosphate kinase 2 (PPK2) J4N40_13430 PF01895 PhoU domain J4N40_13435 PF00005 ABC transporter J4N40_13440 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_13445 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_13450 PF17941 Polyphosphate kinase C-terminal domain 1 J4N40_13450 PF13090 Polyphosphate kinase C-terminal domain 2 J4N40_13450 PF02503 Polyphosphate kinase middle domain J4N40_13450 PF13089 Polyphosphate kinase N-terminal domain J4N40_13455 PF02541 Ppx/GppA phosphatase family J4N40_13460 PF12849 PBP superfamily domain J4N40_13465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_13465 PF00512 His Kinase A (phospho-acceptor) domain J4N40_13465 PF00989 PAS fold J4N40_13465 PF11808 Phosphate regulon sensor protein PhoR J4N40_13470 PF00486 Transcriptional regulatory protein, C terminal J4N40_13470 PF00072 Response regulator receiver domain J4N40_13475 PF04381 Putative exonuclease, RdgC J4N40_13480 PF01136 Peptidase family U32 J4N40_13480 PF16325 Peptidase family U32 C-terminal domain J4N40_13485 PF00037 4Fe-4S binding domain J4N40_13495 PF03411 Penicillin-insensitive murein endopeptidase J4N40_13540 PF00004 ATPase family associated with various cellular activities (AAA) J4N40_13540 PF07724 AAA domain (Cdc48 subfamily) J4N40_13540 PF17871 AAA lid domain J4N40_13540 PF02861 Clp amino terminal domain, pathogenicity island component J4N40_13540 PF10431 C-terminal, D2-small domain, of ClpB protein J4N40_13545 PF02578 Multi-copper polyphenol oxidoreductase laccase J4N40_13550 PF01479 S4 domain J4N40_13550 PF00849 RNA pseudouridylate synthase J4N40_13555 PF13525 Outer membrane lipoprotein J4N40_13560 PF01464 Transglycosylase SLT domain J4N40_13560 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N40_13565 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein J4N40_13570 PF01817 Chorismate mutase type II J4N40_13570 PF00800 Prephenate dehydratase J4N40_13575 PF01931 Protein of unknown function DUF84 J4N40_13580 PF01371 Trp repressor protein J4N40_13585 PF01464 Transglycosylase SLT domain J4N40_13585 PF14718 Soluble lytic murein transglycosylase L domain J4N40_13590 PF00005 ABC transporter J4N40_13590 PF12848 ABC transporter J4N40_13595 PF07238 PilZ domain J4N40_13600 PF04225 Opacity-associated protein A LysM-like domain J4N40_13600 PF01551 Peptidase family M23 J4N40_13605 PF01817 Chorismate mutase type II J4N40_13605 PF02153 Prephenate dehydrogenase J4N40_13610 PF00793 DAHP synthetase I family J4N40_13615 PF00933 Glycosyl hydrolase family 3 N terminal domain J4N40_13620 PF03702 Anhydro-N-acetylmuramic acid kinase J4N40_13625 PF01380 SIS domain J4N40_13640 PF02554 Carbon starvation protein CstA J4N40_13645 PF07694 5TMR of 5TMR-LYT J4N40_13645 PF06580 Histidine kinase J4N40_13650 PF04397 LytTr DNA-binding domain J4N40_13650 PF00072 Response regulator receiver domain J4N40_13660 PF02401 LytB protein J4N40_13665 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N40_13670 PF01252 Signal peptidase (SPase) II J4N40_13675 PF08264 Anticodon-binding domain of tRNA J4N40_13675 PF00133 tRNA synthetases class I (I, L, M and V) J4N40_13675 PF06827 Zinc finger found in FPG and IleRS J4N40_13680 PF06574 FAD synthetase J4N40_13680 PF01687 Riboflavin kinase J4N40_13685 PF03023 Lipid II flippase MurJ J4N40_13690 PF01649 Ribosomal protein S20 J4N40_13695 PF01022 Bacterial regulatory protein, arsR family J4N40_13700 PF03466 LysR substrate binding domain J4N40_13700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_13705 PF02690 Na+/Pi-cotransporter J4N40_13720 PF00303 Thymidylate synthase J4N40_13755 PF13657 HipA N-terminal domain J4N40_13755 PF07804 HipA-like C-terminal domain J4N40_13765 PF01381 Helix-turn-helix J4N40_13780 PF00313 'Cold-shock' DNA-binding domain J4N40_13800 PF00313 'Cold-shock' DNA-binding domain J4N40_13840 PF00303 Thymidylate synthase J4N40_13845 PF01790 Prolipoprotein diacylglyceryl transferase J4N40_13850 PF01925 Sulfite exporter TauE/SafE J4N40_13855 PF01590 GAF domain J4N40_13855 PF05524 PEP-utilising enzyme, N-terminal J4N40_13855 PF00391 PEP-utilising enzyme, mobile domain J4N40_13855 PF02896 PEP-utilising enzyme, TIM barrel domain J4N40_13860 PF00293 NUDIX domain J4N40_13865 PF02976 DNA mismatch repair enzyme MutH J4N40_13875 PF00248 Aldo/keto reductase family J4N40_13885 PF02954 Bacterial regulatory protein, Fis family J4N40_13885 PF00072 Response regulator receiver domain J4N40_13885 PF00158 Sigma-54 interaction domain J4N40_13890 PF01336 OB-fold nucleic acid binding domain J4N40_13890 PF00152 tRNA synthetases class II (D, K and N) J4N40_13900 PF02272 DHHA1 domain J4N40_13900 PF01368 DHH family J4N40_13900 PF17768 RecJ OB domain J4N40_13905 PF13098 Thioredoxin-like domain J4N40_13905 PF10411 Disulfide bond isomerase protein N-terminus J4N40_13910 PF02899 Phage integrase, N-terminal SAM-like domain J4N40_13910 PF00589 Phage integrase family J4N40_13915 PF00258 Flavodoxin J4N40_13920 PF05525 Branched-chain amino acid transport protein J4N40_13925 PF05175 Methyltransferase small domain J4N40_13930 PF00271 Helicase conserved C-terminal domain J4N40_13930 PF00270 DEAD/DEAH box helicase J4N40_13935 PF03883 Peroxide stress protein YaaA J4N40_13940 PF01235 Sodium:alanine symporter family J4N40_13955 PF03167 Uracil DNA glycosylase superfamily J4N40_13960 PF01261 Xylose isomerase-like TIM barrel J4N40_13965 PF01228 Glycine radical J4N40_13975 PF00291 Pyridoxal-phosphate dependent enzyme J4N40_13975 PF14821 Threonine synthase N terminus J4N40_13980 PF00288 GHMP kinases N terminal domain J4N40_13980 PF08544 GHMP kinases C terminal J4N40_13985 PF00696 Amino acid kinase family J4N40_13985 PF01842 ACT domain J4N40_13985 PF13840 ACT domain J4N40_13985 PF00742 Homoserine dehydrogenase J4N40_13985 PF03447 Homoserine dehydrogenase, NAD binding domain J4N40_14000 PF03737 Aldolase/RraA J4N40_14010 PF00072 Response regulator receiver domain J4N40_14010 PF00486 Transcriptional regulatory protein, C terminal J4N40_14020 PF00989 PAS fold J4N40_14020 PF01627 Hpt domain J4N40_14020 PF18415 Histidine kinase receptor ArcB trans-membrane domain J4N40_14020 PF00512 His Kinase A (phospho-acceptor) domain J4N40_14020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_14020 PF00072 Response regulator receiver domain J4N40_14025 PF00990 Diguanylate cyclase, GGDEF domain J4N40_14025 PF00360 Phytochrome region J4N40_14025 PF00563 EAL domain J4N40_14025 PF01590 GAF domain J4N40_14030 PF16199 Radical_SAM C-terminal domain J4N40_14030 PF04055 Radical SAM superfamily J4N40_14035 PF00310 Glutamine amidotransferases class-II J4N40_14035 PF04898 Glutamate synthase central domain J4N40_14035 PF01645 Conserved region in glutamate synthase J4N40_14035 PF01493 GXGXG motif J4N40_14040 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster J4N40_14040 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N40_14045 PF00310 Glutamine amidotransferases class-II J4N40_14045 PF04898 Glutamate synthase central domain J4N40_14045 PF01645 Conserved region in glutamate synthase J4N40_14045 PF01493 GXGXG motif J4N40_14050 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster J4N40_14050 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N40_14060 PF01048 Phosphorylase superfamily J4N40_14065 PF03186 CobD/Cbib protein J4N40_14065 PF17113 Regulatory signalling modulator protein AmpE J4N40_14070 PF01497 Periplasmic binding protein J4N40_14075 PF03458 UPF0126 domain J4N40_14080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_14080 PF03466 LysR substrate binding domain J4N40_14085 PF01925 Sulfite exporter TauE/SafE J4N40_14100 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain J4N40_14100 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J4N40_14100 PF02142 MGS-like domain J4N40_14105 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain J4N40_14105 PF00117 Glutamine amidotransferase class-I J4N40_14110 PF05173 Dihydrodipicolinate reductase, C-terminus J4N40_14110 PF01113 Dihydrodipicolinate reductase, N-terminus J4N40_14115 PF00293 NUDIX domain J4N40_14120 PF07516 SecA Wing and Scaffold domain J4N40_14120 PF01043 SecA preprotein cross-linking domain J4N40_14120 PF07517 SecA DEAD-like domain J4N40_14120 PF02810 SEC-C motif J4N40_14130 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase J4N40_14135 PF12327 FtsZ family, C-terminal domain J4N40_14135 PF00091 Tubulin/FtsZ family, GTPase domain J4N40_14140 PF02491 SHS2 domain inserted in FTSA J4N40_14145 PF03799 Cell division protein FtsQ J4N40_14145 PF08478 POTRA domain, FtsQ-type J4N40_14150 PF01225 Mur ligase family, catalytic domain J4N40_14150 PF02875 Mur ligase family, glutamate ligase domain J4N40_14150 PF08245 Mur ligase middle domain J4N40_14155 PF04101 Glycosyltransferase family 28 C-terminal domain J4N40_14155 PF03033 Glycosyltransferase family 28 N-terminal domain J4N40_14160 PF01098 Cell cycle protein J4N40_14165 PF02875 Mur ligase family, glutamate ligase domain J4N40_14165 PF08245 Mur ligase middle domain J4N40_14170 PF00953 Glycosyl transferase family 4 J4N40_14170 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 J4N40_14175 PF01225 Mur ligase family, catalytic domain J4N40_14175 PF02875 Mur ligase family, glutamate ligase domain J4N40_14175 PF08245 Mur ligase middle domain J4N40_14180 PF08245 Mur ligase middle domain J4N40_14180 PF01225 Mur ligase family, catalytic domain J4N40_14180 PF02875 Mur ligase family, glutamate ligase domain J4N40_14185 PF03717 Penicillin-binding Protein dimerisation domain J4N40_14185 PF00905 Penicillin binding protein transpeptidase domain J4N40_14190 PF04999 Cell division protein FtsL J4N40_14195 PF01795 MraW methylase family J4N40_14205 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N40_14210 PF04348 LppC putative lipoprotein J4N40_14215 PF02021 Uncharacterised protein family UPF0102 J4N40_14220 PF13580 SIS domain J4N40_14225 PF04972 BON domain J4N40_14230 PF04386 Stringent starvation protein B J4N40_14235 PF00043 Glutathione S-transferase, C-terminal domain J4N40_14235 PF02798 Glutathione S-transferase, N-terminal domain J4N40_14240 PF02167 Cytochrome C1 family J4N40_14245 PF00032 Cytochrome b(C-terminal)/b6/petD J4N40_14245 PF00033 Cytochrome b/b6/petB J4N40_14250 PF00355 Rieske [2Fe-2S] domain J4N40_14250 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal J4N40_14255 PF00380 Ribosomal protein S9/S16 J4N40_14260 PF00572 Ribosomal protein L13 J4N40_14265 PF03969 AFG1-like ATPase J4N40_14270 PF06295 Protein of unknown function (DUF1043) J4N40_14275 PF00595 PDZ domain J4N40_14280 PF13180 PDZ domain J4N40_14285 PF00521 DNA gyrase/topoisomerase IV, subunit A J4N40_14285 PF03989 DNA gyrase C-terminal domain, beta-propeller J4N40_14290 PF00204 DNA gyrase B J4N40_14290 PF00986 DNA gyrase B subunit, carboxyl terminus J4N40_14290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_14290 PF01751 Toprim domain J4N40_14295 PF05728 Uncharacterised protein family (UPF0227) J4N40_14300 PF00149 Calcineurin-like phosphoesterase J4N40_14305 PF06853 Protein of unknown function (DUF1249) J4N40_14310 PF00293 NUDIX domain J4N40_14315 PF02321 Outer membrane efflux protein J4N40_14320 PF00294 pfkB family carbohydrate kinase J4N40_14320 PF01467 Cytidylyltransferase-like J4N40_14325 PF08335 GlnD PII-uridylyltransferase J4N40_14325 PF03710 Glutamate-ammonia ligase adenylyltransferase J4N40_14330 PF02743 Cache domain J4N40_14330 PF00672 HAMP domain J4N40_14330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N40_14340 PF01928 CYTH domain J4N40_14345 PF01865 Protein of unknown function DUF47 J4N40_14350 PF01384 Phosphate transporter family J4N40_14355 PF08239 Bacterial SH3 domain J4N40_14370 PF13401 AAA domain J4N40_14370 PF01471 Putative peptidoglycan binding domain J4N40_14375 PF01966 HD domain J4N40_14375 PF01743 Poly A polymerase head domain J4N40_14375 PF12627 Probable RNA and SrmB- binding site of polymerase A J4N40_14380 PF02673 Bacitracin resistance protein BacA J4N40_14385 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J4N40_14390 PF02152 Dihydroneopterin aldolase J4N40_14395 PF02660 Glycerol-3-phosphate acyltransferase J4N40_14400 PF00561 alpha/beta hydrolase fold J4N40_14405 PF00814 Glycoprotease family J4N40_14410 PF01165 Ribosomal protein S21 J4N40_14415 PF09424 Yqey-like protein J4N40_14420 PF08278 DNA primase DnaG DnaB-binding J4N40_14420 PF01807 CHC2 zinc finger J4N40_14420 PF10410 DnaB-helicase binding domain of primase J4N40_14420 PF08275 DNA primase catalytic core, N-terminal domain J4N40_14425 PF04546 Sigma-70, non-essential region J4N40_14425 PF03979 Sigma-70 factor, region 1.1 J4N40_14425 PF00140 Sigma-70 factor, region 1.2 J4N40_14425 PF04542 Sigma-70 region 2 J4N40_14425 PF04539 Sigma-70 region 3 J4N40_14425 PF04545 Sigma-70, region 4 J4N40_14455 PF03180 NLPA lipoprotein J4N40_14480 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N40_14480 PF02378 Phosphotransferase system, EIIC J4N40_14480 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N40_14485 PF01232 Mannitol dehydrogenase Rossmann domain J4N40_14485 PF08125 Mannitol dehydrogenase C-terminal domain J4N40_14490 PF05068 Mannitol repressor J4N40_14495 PF02954 Bacterial regulatory protein, Fis family J4N40_14495 PF00989 PAS fold J4N40_14495 PF00158 Sigma-54 interaction domain J4N40_14500 PF02896 PEP-utilising enzyme, TIM barrel domain J4N40_14500 PF05524 PEP-utilising enzyme, N-terminal J4N40_14500 PF00391 PEP-utilising enzyme, mobile domain J4N40_14505 PF02734 DAK2 domain J4N40_14510 PF02733 Dak1 domain J4N40_14515 PF00465 Iron-containing alcohol dehydrogenase J4N40_14520 PF01380 SIS domain J4N40_14525 PF00455 DeoR C terminal sensor domain J4N40_14525 PF08220 DeoR-like helix-turn-helix domain J4N40_14530 PF00224 Pyruvate kinase, barrel domain J4N40_14530 PF02887 Pyruvate kinase, alpha/beta domain J4N40_14540 PF00990 Diguanylate cyclase, GGDEF domain J4N40_14545 PF10369 Small subunit of acetolactate synthase J4N40_14550 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J4N40_14550 PF00205 Thiamine pyrophosphate enzyme, central domain J4N40_14550 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J4N40_14555 PF00501 AMP-binding enzyme J4N40_14560 PF03466 LysR substrate binding domain J4N40_14560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_14570 PF01569 PAP2 superfamily J4N40_14580 PF00682 HMGL-like J4N40_14580 PF08502 LeuA allosteric (dimerisation) domain J4N40_14585 PF00180 Isocitrate/isopropylmalate dehydrogenase J4N40_14590 PF00330 Aconitase family (aconitate hydratase) J4N40_14595 PF00694 Aconitase C-terminal domain J4N40_14605 PF05099 Tellurite resistance protein TerB J4N40_14605 PF00226 DnaJ domain J4N40_14610 PF04453 LPS transport system D J4N40_14610 PF03968 OstA-like protein J4N40_14615 PF09312 SurA N-terminal domain J4N40_14620 PF04166 Pyridoxal phosphate biosynthetic protein PdxA J4N40_14625 PF00398 Ribosomal RNA adenine dimethylase J4N40_14630 PF04379 ApaG domain J4N40_14635 PF00149 Calcineurin-like phosphoesterase J4N40_14640 PF00186 Dihydrofolate reductase J4N40_14645 PF12821 Threonine/Serine exporter, ThrE J4N40_14650 PF06738 Putative threonine/serine exporter J4N40_14655 PF01018 GTP1/OBG J4N40_14655 PF01926 50S ribosome-binding GTPase J4N40_14660 PF01016 Ribosomal L27 protein J4N40_14665 PF00829 Ribosomal prokaryotic L21 protein J4N40_14670 PF00348 Polyprenyl synthetase J4N40_14680 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain J4N40_14680 PF00056 lactate/malate dehydrogenase, NAD binding domain J4N40_14685 PF01316 Arginine repressor, DNA binding domain J4N40_14685 PF02863 Arginine repressor, C-terminal domain J4N40_14690 PF16868 NMT1-like family J4N40_14705 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J4N40_14710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_14710 PF03466 LysR substrate binding domain J4N40_14715 PF00005 ABC transporter J4N40_14720 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_14730 PF02441 Flavoprotein J4N40_14735 PF01225 Mur ligase family, catalytic domain J4N40_14735 PF02875 Mur ligase family, glutamate ligase domain J4N40_14735 PF08245 Mur ligase middle domain J4N40_14740 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain J4N40_14745 PF00719 Inorganic pyrophosphatase J4N40_14755 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like J4N40_14760 PF04357 TamB, inner membrane protein subunit of TAM complex J4N40_14765 PF01103 Surface antigen J4N40_14765 PF07244 Surface antigen variable number repeat J4N40_14765 PF17243 POTRA domain TamA domain 1 J4N40_14770 PF01625 Peptide methionine sulfoxide reductase J4N40_14775 PF06526 Protein of unknown function (DUF1107) J4N40_14780 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) J4N40_14785 PF10795 Protein of unknown function (DUF2607) J4N40_14795 PF00005 ABC transporter J4N40_14820 PF03600 Citrate transporter J4N40_14820 PF02080 TrkA-C domain J4N40_14825 PF00009 Elongation factor Tu GTP binding domain J4N40_14830 PF01507 Phosphoadenosine phosphosulfate reductase family J4N40_14835 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N40_14835 PF10414 Sirohaem synthase dimerisation region J4N40_14835 PF14824 Sirohaem biosynthesis protein central J4N40_14840 PF02872 5'-nucleotidase, C-terminal domain J4N40_14840 PF00149 Calcineurin-like phosphoesterase J4N40_14850 PF03880 DbpA RNA binding domain J4N40_14850 PF00271 Helicase conserved C-terminal domain J4N40_14850 PF00270 DEAD/DEAH box helicase J4N40_14855 PF13673 Acetyltransferase (GNAT) domain J4N40_14865 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N40_14865 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J4N40_14875 PF01196 Ribosomal protein L17 J4N40_14880 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain J4N40_14880 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain J4N40_14880 PF01000 RNA polymerase Rpb3/RpoA insert domain J4N40_14885 PF00163 Ribosomal protein S4/S9 N-terminal domain J4N40_14885 PF01479 S4 domain J4N40_14890 PF00411 Ribosomal protein S11 J4N40_14895 PF00416 Ribosomal protein S13/S18 J4N40_14900 PF00444 Ribosomal protein L36 J4N40_14905 PF00344 SecY translocase J4N40_14910 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A J4N40_14915 PF00327 Ribosomal protein L30p/L7e J4N40_14920 PF00333 Ribosomal protein S5, N-terminal domain J4N40_14920 PF03719 Ribosomal protein S5, C-terminal domain J4N40_14925 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast J4N40_14930 PF00347 Ribosomal protein L6 J4N40_14935 PF00410 Ribosomal protein S8 J4N40_14940 PF00253 Ribosomal protein S14p/S29e J4N40_14945 PF00281 Ribosomal protein L5 J4N40_14945 PF00673 ribosomal L5P family C-terminus J4N40_14950 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 J4N40_14950 PF00467 KOW motif J4N40_14955 PF00238 Ribosomal protein L14p/L23e J4N40_14960 PF00366 Ribosomal protein S17 J4N40_14965 PF00831 Ribosomal L29 protein J4N40_14970 PF00252 Ribosomal protein L16p/L10e J4N40_14975 PF07650 KH domain J4N40_14975 PF00189 Ribosomal protein S3, C-terminal domain J4N40_14980 PF00237 Ribosomal protein L22p/L17e J4N40_14985 PF00203 Ribosomal protein S19 J4N40_14990 PF00181 Ribosomal Proteins L2, RNA binding domain J4N40_14990 PF03947 Ribosomal Proteins L2, C-terminal domain J4N40_14995 PF00276 Ribosomal protein L23 J4N40_15000 PF00573 Ribosomal protein L4/L1 family J4N40_15005 PF00297 Ribosomal protein L3 J4N40_15010 PF00338 Ribosomal protein S10p/S20e J4N40_15015 PF01197 Ribosomal protein L31 J4N40_15020 PF00270 DEAD/DEAH box helicase J4N40_15020 PF00271 Helicase conserved C-terminal domain J4N40_15020 PF17764 3′ DNA-binding domain (3′BD) J4N40_15020 PF18074 Primosomal protein N C-terminal domain J4N40_15020 PF18319 PriA DNA helicase Cys-rich region (CRR) domain J4N40_15025 PF00356 Bacterial regulatory proteins, lacI family J4N40_15035 PF00227 Proteasome subunit J4N40_15040 PF00004 ATPase family associated with various cellular activities (AAA) J4N40_15040 PF07724 AAA domain (Cdc48 subfamily) J4N40_15045 PF01040 UbiA prenyltransferase family J4N40_15050 PF03737 Aldolase/RraA J4N40_15055 PF06005 Cell division protein ZapB J4N40_15060 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded J4N40_15065 PF00455 DeoR C terminal sensor domain J4N40_15065 PF08220 DeoR-like helix-turn-helix domain J4N40_15090 PF00121 Triosephosphate isomerase J4N40_15100 PF00483 Nucleotidyl transferase J4N40_15105 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J4N40_15105 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J4N40_15105 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J4N40_15110 PF00953 Glycosyl transferase family 4 J4N40_15115 PF01238 Phosphomannose isomerase type I J4N40_15120 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J4N40_15120 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J4N40_15120 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J4N40_15120 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J4N40_15125 PF01050 Mannose-6-phosphate isomerase J4N40_15125 PF00483 Nucleotidyl transferase J4N40_15140 PF13439 Glycosyltransferase Family 4 J4N40_15140 PF00534 Glycosyl transferases group 1 J4N40_15145 PF00132 Bacterial transferase hexapeptide (six repeats) J4N40_15145 PF14602 Hexapeptide repeat of succinyl-transferase J4N40_15145 PF12464 Maltose acetyltransferase J4N40_15165 PF03102 NeuB family J4N40_15165 PF08666 SAF domain J4N40_15170 PF02348 Cytidylyltransferase J4N40_15170 PF13472 GDSL-like Lipase/Acylhydrolase family J4N40_15205 PF06082 Exopolysaccharide biosynthesis protein YbjH J4N40_15210 PF01370 NAD dependent epimerase/dehydratase family J4N40_15215 PF03279 Bacterial lipid A biosynthesis acyltransferase J4N40_15225 PF01075 Glycosyltransferase family 9 (heptosyltransferase) J4N40_15230 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) J4N40_15235 PF00535 Glycosyl transferase family 2 J4N40_15245 PF02911 Formyl transferase, C-terminal domain J4N40_15245 PF00551 Formyl transferase J4N40_15260 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J4N40_15260 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J4N40_15270 PF13193 AMP-binding enzyme C-terminal domain J4N40_15270 PF00668 Condensation domain J4N40_15270 PF00550 Phosphopantetheine attachment site J4N40_15270 PF00975 Thioesterase domain J4N40_15270 PF00501 AMP-binding enzyme J4N40_15275 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J4N40_15280 PF00483 Nucleotidyl transferase J4N40_15285 PF16363 GDP-mannose 4,6 dehydratase J4N40_15295 PF01219 Prokaryotic diacylglycerol kinase J4N40_15300 PF01075 Glycosyltransferase family 9 (heptosyltransferase) J4N40_15305 PF00535 Glycosyl transferase family 2 J4N40_15310 PF00535 Glycosyl transferase family 2 J4N40_15315 PF05686 Glycosyl transferase family 90 J4N40_15320 PF01467 Cytidylyltransferase-like J4N40_15325 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain J4N40_15325 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain J4N40_15325 PF06827 Zinc finger found in FPG and IleRS J4N40_15335 PF00471 Ribosomal protein L33 J4N40_15340 PF00830 Ribosomal L28 family J4N40_15345 PF04002 RadC-like JAB domain J4N40_15350 PF17200 Single Cache domain 2 J4N40_15350 PF00672 HAMP domain J4N40_15350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N40_15355 PF04127 DNA / pantothenate metabolism flavoprotein J4N40_15355 PF02441 Flavoprotein J4N40_15360 PF00440 Bacterial regulatory proteins, tetR family J4N40_15365 PF03279 Bacterial lipid A biosynthesis acyltransferase J4N40_15370 PF00156 Phosphoribosyl transferase domain J4N40_15375 PF03725 3' exoribonuclease family, domain 2 J4N40_15375 PF01138 3' exoribonuclease family, domain 1 J4N40_15380 PF08340 Domain of unknown function (DUF1732) J4N40_15380 PF03755 YicC-like family, N-terminal region J4N40_15390 PF00005 ABC transporter J4N40_15390 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N40_15395 PF00005 ABC transporter J4N40_15395 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N40_15400 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N40_15405 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_15405 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N40_15410 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_15415 PF00593 TonB dependent receptor J4N40_15415 PF07715 TonB-dependent Receptor Plug Domain J4N40_15430 PF01618 MotA/TolQ/ExbB proton channel family J4N40_15435 PF02472 Biopolymer transport protein ExbD/TolR J4N40_15450 PF00625 Guanylate kinase J4N40_15455 PF01192 RNA polymerase Rpb6 J4N40_15460 PF13291 ACT domain J4N40_15460 PF04607 Region found in RelA / SpoT proteins J4N40_15460 PF02824 TGS domain J4N40_15465 PF00588 SpoU rRNA Methylase family J4N40_15465 PF12105 SpoU, rRNA methylase, C-terminal J4N40_15470 PF00270 DEAD/DEAH box helicase J4N40_15470 PF17191 RecG wedge domain J4N40_15470 PF00271 Helicase conserved C-terminal domain J4N40_15475 PF00860 Permease family J4N40_15480 PF00672 HAMP domain J4N40_15480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_15480 PF00512 His Kinase A (phospho-acceptor) domain J4N40_15485 PF00072 Response regulator receiver domain J4N40_15485 PF00486 Transcriptional regulatory protein, C terminal J4N40_15495 PF03449 Transcription elongation factor, N-terminal J4N40_15495 PF01272 Transcription elongation factor, GreA/GreB, C-term J4N40_15505 PF16921 Tex protein YqgF-like domain J4N40_15505 PF09371 Tex-like protein N-terminal domain J4N40_15505 PF17674 HHH domain J4N40_15505 PF00575 S1 RNA binding domain J4N40_15515 PF00561 alpha/beta hydrolase fold J4N40_15520 PF00156 Phosphoribosyl transferase domain J4N40_15525 PF01106 NifU-like domain J4N40_15525 PF01521 Iron-sulphur cluster biosynthesis J4N40_15530 PF00293 NUDIX domain J4N40_15535 PF00459 Inositol monophosphatase family J4N40_15540 PF01203 Type II secretion system (T2SS), protein N J4N40_15545 PF04612 Type II secretion system (T2SS), protein M J4N40_15550 PF05134 Type II secretion system (T2SS), protein L J4N40_15550 PF12693 GspL periplasmic domain J4N40_15555 PF03934 Type II secretion system (T2SS), protein K J4N40_15560 PF11612 Type II secretion system (T2SS), protein J J4N40_15560 PF07963 Prokaryotic N-terminal methylation motif J4N40_15565 PF02501 Type II secretion system (T2SS), protein I J4N40_15565 PF07963 Prokaryotic N-terminal methylation motif J4N40_15570 PF12019 Type II transport protein GspH J4N40_15575 PF07963 Prokaryotic N-terminal methylation motif J4N40_15575 PF08334 Type II secretion system (T2SS), protein G J4N40_15580 PF00482 Type II secretion system (T2SS), protein F J4N40_15585 PF00437 Type II/IV secretion system protein J4N40_15590 PF00263 Bacterial type II and III secretion system protein J4N40_15590 PF03958 Bacterial type II/III secretion system short domain J4N40_15595 PF11356 Type II secretion system protein C J4N40_15600 PF01479 S4 domain J4N40_15605 PF01430 Hsp33 protein J4N40_15610 PF01293 Phosphoenolpyruvate carboxykinase J4N40_15620 PF00583 Acetyltransferase (GNAT) family J4N40_15620 PF09500 Putative thioesterase (yiiD_Cterm) J4N40_15625 PF02580 D-Tyr-tRNA(Tyr) deacylase J4N40_15630 PF03631 Virulence factor BrkB J4N40_15640 PF00308 Bacterial dnaA protein J4N40_15640 PF08299 Bacterial dnaA protein helix-turn-helix J4N40_15645 PF00009 Elongation factor Tu GTP binding domain J4N40_15645 PF00679 Elongation factor G C-terminus J4N40_15645 PF03144 Elongation factor Tu domain 2 J4N40_15650 PF00120 Glutamine synthetase, catalytic domain J4N40_15650 PF03951 Glutamine synthetase, beta-Grasp domain J4N40_15660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_15660 PF00512 His Kinase A (phospho-acceptor) domain J4N40_15660 PF00989 PAS fold J4N40_15665 PF02954 Bacterial regulatory protein, Fis family J4N40_15665 PF00072 Response regulator receiver domain J4N40_15665 PF00158 Sigma-54 interaction domain J4N40_15670 PF03707 Bacterial signalling protein N terminal repeat J4N40_15670 PF00990 Diguanylate cyclase, GGDEF domain J4N40_15670 PF00563 EAL domain J4N40_15675 PF00962 Adenosine/AMP deaminase J4N40_15680 PF06969 HemN C-terminal domain J4N40_15680 PF04055 Radical SAM superfamily J4N40_15685 PF10675 Protein of unknown function (DUF2489) J4N40_15690 PF04220 Der GTPase activator (YihI) J4N40_15700 PF00034 Cytochrome c J4N40_15705 PF01926 50S ribosome-binding GTPase J4N40_15710 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J4N40_15710 PF00476 DNA polymerase family A J4N40_15710 PF01612 3'-5' exonuclease J4N40_15710 PF01367 5'-3' exonuclease, C-terminal SAM fold J4N40_15715 PF00583 Acetyltransferase (GNAT) family J4N40_15720 PF00490 Delta-aminolevulinic acid dehydratase J4N40_15725 PF01026 TatD related DNase J4N40_15730 PF00902 Sec-independent protein translocase protein (TatC) J4N40_15735 PF02416 mttA/Hcf106 family J4N40_15740 PF02416 mttA/Hcf106 family J4N40_15745 PF03109 ABC1 family J4N40_15750 PF02036 SCP-2 sterol transfer family J4N40_15755 PF01209 ubiE/COQ5 methyltransferase family J4N40_15760 PF02646 RmuC family J4N40_15770 PF00563 EAL domain J4N40_15770 PF03707 Bacterial signalling protein N terminal repeat J4N40_15770 PF00990 Diguanylate cyclase, GGDEF domain J4N40_15775 PF01594 AI-2E family transporter J4N40_15805 PF00781 Diacylglycerol kinase catalytic domain J4N40_15830 PF01590 GAF domain J4N40_15830 PF02954 Bacterial regulatory protein, Fis family J4N40_15830 PF00158 Sigma-54 interaction domain J4N40_15840 PF10625 Universal stress protein B (UspB) J4N40_15845 PF00210 Ferritin-like domain J4N40_15850 PF00582 Universal stress protein family J4N40_15855 PF00892 EamA-like transporter family J4N40_15865 PF04445 Putative SAM-dependent methyltransferase J4N40_15870 PF00990 Diguanylate cyclase, GGDEF domain J4N40_15870 PF00563 EAL domain J4N40_15870 PF08448 PAS fold J4N40_15875 PF01037 Lrp/AsnC ligand binding domain J4N40_15880 PF01432 Peptidase family M3 J4N40_15885 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ J4N40_15890 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4N40_15890 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N40_15895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_15895 PF03466 LysR substrate binding domain J4N40_15900 PF01048 Phosphorylase superfamily J4N40_15905 PF01081 KDPG and KHG aldolase J4N40_15910 PF02447 GntP family permease J4N40_15915 PF01202 Shikimate kinase J4N40_15920 PF00920 Dehydratase family J4N40_15925 PF00893 Small Multidrug Resistance protein J4N40_15930 PF00893 Small Multidrug Resistance protein J4N40_15935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_15935 PF03466 LysR substrate binding domain J4N40_15940 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family J4N40_15940 PF00356 Bacterial regulatory proteins, lacI family J4N40_15950 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_15950 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N40_15955 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_15960 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N40_15965 PF00005 ABC transporter J4N40_15965 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N40_15970 PF13419 Haloacid dehalogenase-like hydrolase J4N40_16000 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J4N40_16005 PF13361 UvrD-like helicase C-terminal domain J4N40_16005 PF00580 UvrD/REP helicase N-terminal domain J4N40_16010 PF00440 Bacterial regulatory proteins, tetR family J4N40_16010 PF16295 Tetracyclin repressor-like, C-terminal domain J4N40_16015 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N40_16020 PF00873 AcrB/AcrD/AcrF family J4N40_16025 PF04380 Membrane fusogenic activity J4N40_16030 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain J4N40_16030 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain J4N40_16035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_16035 PF03466 LysR substrate binding domain J4N40_16070 PF12724 Flavodoxin domain J4N40_16075 PF02386 Cation transport protein J4N40_16080 PF01205 Uncharacterized protein family UPF0029 J4N40_16080 PF09186 Domain of unknown function (DUF1949) J4N40_16085 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J4N40_16085 PF00378 Enoyl-CoA hydratase/isomerase J4N40_16085 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J4N40_16090 PF00108 Thiolase, N-terminal domain J4N40_16090 PF02803 Thiolase, C-terminal domain J4N40_16095 PF08240 Alcohol dehydrogenase GroES-like domain J4N40_16095 PF00107 Zinc-binding dehydrogenase J4N40_16100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_16100 PF03466 LysR substrate binding domain J4N40_16110 PF01206 Sulfurtransferase TusA J4N40_16120 PF01169 Uncharacterized protein family UPF0016 J4N40_16125 PF02091 Glycyl-tRNA synthetase alpha subunit J4N40_16130 PF05746 DALR anticodon binding domain J4N40_16130 PF02092 Glycyl-tRNA synthetase beta subunit J4N40_16135 PF00128 Alpha amylase, catalytic domain J4N40_16140 PF00155 Aminotransferase class I and II J4N40_16145 PF00011 Hsp20/alpha crystallin family J4N40_16155 PF01751 Toprim domain J4N40_16155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_16155 PF00986 DNA gyrase B subunit, carboxyl terminus J4N40_16155 PF00204 DNA gyrase B J4N40_16155 PF18053 DNA gyrase B subunit insert domain J4N40_16160 PF02463 RecF/RecN/SMC N terminal domain J4N40_16165 PF00712 DNA polymerase III beta subunit, N-terminal domain J4N40_16165 PF02767 DNA polymerase III beta subunit, central domain J4N40_16165 PF02768 DNA polymerase III beta subunit, C-terminal domain J4N40_16170 PF00308 Bacterial dnaA protein J4N40_16170 PF08299 Bacterial dnaA protein helix-turn-helix J4N40_16170 PF11638 DnaA N-terminal domain J4N40_16175 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N40_16180 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_16185 PF00005 ABC transporter J4N40_16190 PF00468 Ribosomal protein L34 J4N40_16195 PF00825 Ribonuclease P J4N40_16200 PF01809 Putative membrane protein insertion efficiency factor J4N40_16205 PF02096 60Kd inner membrane protein J4N40_16205 PF14849 YidC periplasmic domain J4N40_16210 PF10396 GTP-binding protein TrmE N-terminus J4N40_16210 PF12631 MnmE helical domain J4N40_16210 PF01926 50S ribosome-binding GTPase J4N40_16215 PF02899 Phage integrase, N-terminal SAM-like domain J4N40_16215 PF00589 Phage integrase family J4N40_16250 PF11867 Domain of unknown function (DUF3387) J4N40_16250 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) J4N40_16250 PF18766 SWI2/SNF2 ATPase J4N40_16265 PF12161 HsdM N-terminal domain J4N40_16265 PF02384 N-6 DNA Methylase J4N40_16300 PF01381 Helix-turn-helix J4N40_16310 PF00005 ABC transporter J4N40_16310 PF16326 ABC transporter C-terminal domain J4N40_16310 PF12848 ABC transporter J4N40_16315 PF00326 Prolyl oligopeptidase family J4N40_16315 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain J4N40_16325 PF13533 Biotin-lipoyl like J4N40_16330 PF00873 AcrB/AcrD/AcrF family J4N40_16335 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J4N40_16345 PF13302 Acetyltransferase (GNAT) domain J4N40_16355 PF17151 Periplasmic sensor domain J4N40_16355 PF00990 Diguanylate cyclase, GGDEF domain J4N40_16370 PF00873 AcrB/AcrD/AcrF family J4N40_16375 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N40_16390 PF12838 4Fe-4S dicluster domain J4N40_16390 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J4N40_16390 PF00384 Molybdopterin oxidoreductase J4N40_16390 PF01568 Molydopterin dinucleotide binding domain J4N40_16390 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region J4N40_16405 PF00005 ABC transporter J4N40_16415 PF02567 Phenazine biosynthesis-like protein J4N40_16420 PF01161 Phosphatidylethanolamine-binding protein J4N40_16430 PF01758 Sodium Bile acid symporter family J4N40_16445 PF01638 HxlR-like helix-turn-helix J4N40_16465 PF03466 LysR substrate binding domain J4N40_16465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_16470 PF00248 Aldo/keto reductase family J4N40_16475 PF03928 Haem-degrading J4N40_16495 PF03222 Tryptophan/tyrosine permease family J4N40_16505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N40_16505 PF00672 HAMP domain J4N40_16505 PF02743 Cache domain J4N40_16510 PF07670 Nucleoside recognition J4N40_16530 PF01551 Peptidase family M23 J4N40_16530 PF08525 Opacity-associated protein A N-terminal motif J4N40_16530 PF01476 LysM domain J4N40_16535 PF08448 PAS fold J4N40_16535 PF08447 PAS fold J4N40_16535 PF00990 Diguanylate cyclase, GGDEF domain J4N40_16535 PF00563 EAL domain J4N40_16540 PF03466 LysR substrate binding domain J4N40_16540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_16545 PF07690 Major Facilitator Superfamily J4N40_16555 PF00462 Glutaredoxin J4N40_16560 PF00892 EamA-like transporter family J4N40_16565 PF00267 Gram-negative porin J4N40_16575 PF01557 Fumarylacetoacetate (FAA) hydrolase family J4N40_16595 PF01810 LysE type translocator J4N40_16605 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J4N40_16605 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J4N40_16605 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J4N40_16605 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J4N40_16610 PF02790 Cytochrome C oxidase subunit II, transmembrane domain J4N40_16610 PF00116 Cytochrome C oxidase subunit II, periplasmic domain J4N40_16615 PF00115 Cytochrome C and Quinol oxidase polypeptide I J4N40_16620 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 J4N40_16625 PF00510 Cytochrome c oxidase subunit III J4N40_16645 PF02628 Cytochrome oxidase assembly protein J4N40_16650 PF01040 UbiA prenyltransferase family J4N40_16655 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J4N40_16655 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N40_16665 PF05736 OprF membrane domain J4N40_16665 PF00691 OmpA family J4N40_16685 PF00313 'Cold-shock' DNA-binding domain J4N40_16690 PF03889 Alternative ribosome-rescue factor A J4N40_16695 PF00990 Diguanylate cyclase, GGDEF domain J4N40_16700 PF00140 Sigma-70 factor, region 1.2 J4N40_16700 PF04542 Sigma-70 region 2 J4N40_16700 PF04539 Sigma-70 region 3 J4N40_16700 PF04545 Sigma-70, region 4 J4N40_16710 PF00664 ABC transporter transmembrane region J4N40_16710 PF00005 ABC transporter J4N40_16715 PF00005 ABC transporter J4N40_16715 PF00664 ABC transporter transmembrane region J4N40_16720 PF02321 Outer membrane efflux protein J4N40_16725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_16725 PF00072 Response regulator receiver domain J4N40_16730 PF13533 Biotin-lipoyl like J4N40_16750 PF00672 HAMP domain J4N40_16750 PF12729 Four helix bundle sensory module for signal transduction J4N40_16750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N40_16755 PF00210 Ferritin-like domain J4N40_16765 PF07995 Glucose / Sorbosone dehydrogenase J4N40_16770 PF00465 Iron-containing alcohol dehydrogenase J4N40_16785 PF00892 EamA-like transporter family J4N40_16795 PF03466 LysR substrate binding domain J4N40_16795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_16805 PF13193 AMP-binding enzyme C-terminal domain J4N40_16805 PF00501 AMP-binding enzyme J4N40_16810 PF00351 Biopterin-dependent aromatic amino acid hydroxylase J4N40_16815 PF01329 Pterin 4 alpha carbinolamine dehydratase J4N40_16835 PF12843 Putative quorum-sensing-regulated virulence factor J4N40_16845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_16845 PF03466 LysR substrate binding domain J4N40_16850 PF07690 Major Facilitator Superfamily J4N40_16855 PF00271 Helicase conserved C-terminal domain J4N40_16855 PF00270 DEAD/DEAH box helicase J4N40_16860 PF09905 DNA-binding protein VF530 J4N40_16870 PF00291 Pyridoxal-phosphate dependent enzyme J4N40_16875 PF00313 'Cold-shock' DNA-binding domain J4N40_16885 PF01470 Pyroglutamyl peptidase J4N40_16895 PF02492 CobW/HypB/UreG, nucleotide-binding domain J4N40_16895 PF07683 Cobalamin synthesis protein cobW C-terminal domain J4N40_16900 PF00270 DEAD/DEAH box helicase J4N40_16900 PF00271 Helicase conserved C-terminal domain J4N40_16920 PF12792 CSS motif domain associated with EAL J4N40_16920 PF00563 EAL domain J4N40_16925 PF00005 ABC transporter J4N40_16930 PF00672 HAMP domain J4N40_16930 PF12729 Four helix bundle sensory module for signal transduction J4N40_16930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N40_17000 PF01575 MaoC like domain J4N40_17005 PF12849 PBP superfamily domain J4N40_17015 PF12833 Helix-turn-helix domain J4N40_17020 PF08206 Ribonuclease B OB domain J4N40_17020 PF00773 RNB domain J4N40_17020 PF00575 S1 RNA binding domain J4N40_17025 PF03880 DbpA RNA binding domain J4N40_17025 PF00271 Helicase conserved C-terminal domain J4N40_17025 PF00270 DEAD/DEAH box helicase J4N40_17035 PF00871 Acetokinase family J4N40_17040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_17040 PF03466 LysR substrate binding domain J4N40_17045 PF12146 Serine aminopeptidase, S33 J4N40_17050 PF12146 Serine aminopeptidase, S33 J4N40_17065 PF01925 Sulfite exporter TauE/SafE J4N40_17080 PF01475 Ferric uptake regulator family J4N40_17085 PF01979 Amidohydrolase family J4N40_17090 PF00132 Bacterial transferase hexapeptide (six repeats) J4N40_17095 PF07683 Cobalamin synthesis protein cobW C-terminal domain J4N40_17095 PF02492 CobW/HypB/UreG, nucleotide-binding domain J4N40_17100 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family J4N40_17105 PF08525 Opacity-associated protein A N-terminal motif J4N40_17105 PF01551 Peptidase family M23 J4N40_17105 PF01476 LysM domain J4N40_17110 PF07683 Cobalamin synthesis protein cobW C-terminal domain J4N40_17110 PF02492 CobW/HypB/UreG, nucleotide-binding domain J4N40_17115 PF07683 Cobalamin synthesis protein cobW C-terminal domain J4N40_17115 PF02492 CobW/HypB/UreG, nucleotide-binding domain J4N40_17120 PF01258 Prokaryotic dksA/traR C4-type zinc finger J4N40_17125 PF01914 MarC family integral membrane protein J4N40_17140 PF08447 PAS fold J4N40_17140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N40_17140 PF13426 PAS domain J4N40_17150 PF00682 HMGL-like J4N40_17155 PF00378 Enoyl-CoA hydratase/isomerase J4N40_17160 PF01039 Carboxyl transferase domain J4N40_17165 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J4N40_17165 PF02770 Acyl-CoA dehydrogenase, middle domain J4N40_17165 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J4N40_17170 PF00376 MerR family regulatory protein J4N40_17170 PF09278 MerR, DNA binding J4N40_17175 PF02803 Thiolase, C-terminal domain J4N40_17175 PF00108 Thiolase, N-terminal domain J4N40_17180 PF00171 Aldehyde dehydrogenase family J4N40_17185 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J4N40_17185 PF02770 Acyl-CoA dehydrogenase, middle domain J4N40_17185 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J4N40_17190 PF00378 Enoyl-CoA hydratase/isomerase J4N40_17195 PF00378 Enoyl-CoA hydratase/isomerase J4N40_17200 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J4N40_17200 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J4N40_17210 PF06481 COX Aromatic Rich Motif J4N40_17210 PF00116 Cytochrome C oxidase subunit II, periplasmic domain J4N40_17215 PF00115 Cytochrome C and Quinol oxidase polypeptide I J4N40_17220 PF00510 Cytochrome c oxidase subunit III J4N40_17230 PF01040 UbiA prenyltransferase family J4N40_17235 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J4N40_17235 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N40_17250 PF00171 Aldehyde dehydrogenase family J4N40_17260 PF02028 BCCT, betaine/carnitine/choline family transporter J4N40_17290 PF00005 ABC transporter J4N40_17295 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N40_17300 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_17305 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_17315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_17315 PF03466 LysR substrate binding domain J4N40_17320 PF13417 Glutathione S-transferase, N-terminal domain J4N40_17320 PF00043 Glutathione S-transferase, C-terminal domain J4N40_17330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_17330 PF03466 LysR substrate binding domain J4N40_17340 PF00766 Electron transfer flavoprotein FAD-binding domain J4N40_17340 PF01012 Electron transfer flavoprotein domain J4N40_17345 PF02817 e3 binding domain J4N40_17345 PF00364 Biotin-requiring enzyme J4N40_17345 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J4N40_17350 PF02780 Transketolase, C-terminal domain J4N40_17350 PF02779 Transketolase, pyrimidine binding domain J4N40_17355 PF00676 Dehydrogenase E1 component J4N40_17375 PF00012 Hsp70 protein J4N40_17380 PF04314 Copper chaperone PCu(A)C J4N40_17415 PF00072 Response regulator receiver domain J4N40_17415 PF00486 Transcriptional regulatory protein, C terminal J4N40_17435 PF01483 Proprotein convertase P-domain J4N40_17435 PF00082 Subtilase family J4N40_17445 PF00990 Diguanylate cyclase, GGDEF domain J4N40_17450 PF03222 Tryptophan/tyrosine permease family J4N40_17460 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J4N40_17460 PF00384 Molybdopterin oxidoreductase J4N40_17460 PF01568 Molydopterin dinucleotide binding domain J4N40_17465 PF14824 Sirohaem biosynthesis protein central J4N40_17465 PF10414 Sirohaem synthase dimerisation region J4N40_17465 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N40_17470 PF00591 Glycosyl transferase family, a/b domain J4N40_17470 PF02885 Glycosyl transferase family, helical bundle domain J4N40_17475 PF01738 Dienelactone hydrolase family J4N40_17480 PF00072 Response regulator receiver domain J4N40_17480 PF03861 ANTAR domain J4N40_17490 PF00005 ABC transporter J4N40_17495 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_17500 PF00005 ABC transporter J4N40_17505 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N40_17505 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain J4N40_17505 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J4N40_17505 PF18267 Rubredoxin NAD+ reductase C-terminal domain J4N40_17505 PF04324 BFD-like [2Fe-2S] binding domain J4N40_17505 PF13806 Rieske-like [2Fe-2S] domain J4N40_17535 PF00072 Response regulator receiver domain J4N40_17535 PF00211 Adenylate and Guanylate cyclase catalytic domain J4N40_17550 PF00069 Protein kinase domain J4N40_17550 PF03793 PASTA domain J4N40_17565 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE J4N40_17570 PF00691 OmpA family J4N40_17570 PF13677 Membrane MotB of proton-channel complex MotA/MotB J4N40_17575 PF06761 Intracellular multiplication and human macrophage-killing J4N40_17575 PF14331 ImcF-related N-terminal domain J4N40_17575 PF06744 Type VI secretion protein IcmF C-terminal J4N40_17595 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 J4N40_17600 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath J4N40_17605 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath J4N40_17620 PF05947 Type VI secretion system, TssF J4N40_17630 PF07724 AAA domain (Cdc48 subfamily) J4N40_17630 PF00004 ATPase family associated with various cellular activities (AAA) J4N40_17630 PF17871 AAA lid domain J4N40_17630 PF10431 C-terminal, D2-small domain, of ClpB protein J4N40_17640 PF06715 Gp5 C-terminal repeat (3 copies) J4N40_17640 PF04717 Type VI secretion system, phage-baseplate injector J4N40_17655 PF12320 Type 5 capsule protein repressor C-terminal domain J4N40_17655 PF00149 Calcineurin-like phosphoesterase J4N40_17660 PF13476 AAA domain J4N40_17670 PF08212 Lipocalin-like domain J4N40_17680 PF03606 C4-dicarboxylate anaerobic carrier J4N40_17690 PF01212 Beta-eliminating lyase J4N40_17700 PF12592 Protein of unknown function (DUF3763) J4N40_17700 PF17868 AAA lid domain J4N40_17700 PF07728 AAA domain (dynein-related subfamily) J4N40_17705 PF05762 VWA domain containing CoxE-like protein J4N40_17720 PF03466 LysR substrate binding domain J4N40_17720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_17725 PF09330 D-lactate dehydrogenase, membrane binding J4N40_17725 PF01565 FAD binding domain J4N40_17740 PF01168 Alanine racemase, N-terminal domain J4N40_17740 PF00842 Alanine racemase, C-terminal domain J4N40_17745 PF00672 HAMP domain J4N40_17745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N40_17760 PF09154 Domain of unknown function (DUF1939) J4N40_17760 PF00128 Alpha amylase, catalytic domain J4N40_17790 PF00296 Luciferase-like monooxygenase J4N40_17795 PF00990 Diguanylate cyclase, GGDEF domain J4N40_17795 PF00563 EAL domain J4N40_17795 PF03707 Bacterial signalling protein N terminal repeat J4N40_17805 PF00563 EAL domain J4N40_17805 PF00990 Diguanylate cyclase, GGDEF domain J4N40_17805 PF03707 Bacterial signalling protein N terminal repeat J4N40_17810 PF14760 Rnk N-terminus J4N40_17810 PF01272 Transcription elongation factor, GreA/GreB, C-term J4N40_17815 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain J4N40_17815 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N40_17815 PF18267 Rubredoxin NAD+ reductase C-terminal domain J4N40_17815 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J4N40_17815 PF04324 BFD-like [2Fe-2S] binding domain J4N40_17820 PF13806 Rieske-like [2Fe-2S] domain J4N40_17825 PF01226 Formate/nitrite transporter J4N40_17830 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N40_17830 PF14824 Sirohaem biosynthesis protein central J4N40_17830 PF10414 Sirohaem synthase dimerisation region J4N40_17845 PF03605 Anaerobic c4-dicarboxylate membrane transporter J4N40_17855 PF00593 TonB dependent receptor J4N40_17855 PF07715 TonB-dependent Receptor Plug Domain J4N40_17865 PF13302 Acetyltransferase (GNAT) domain J4N40_17870 PF11756 Nitrous oxide-stimulated promoter J4N40_17875 PF07690 Major Facilitator Superfamily J4N40_17880 PF00085 Thioredoxin J4N40_17885 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J4N40_17885 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J4N40_17905 PF01238 Phosphomannose isomerase type I J4N40_17910 PF07690 Major Facilitator Superfamily J4N40_17915 PF05231 MASE1 J4N40_17915 PF07730 Histidine kinase J4N40_17915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_17920 PF00196 Bacterial regulatory proteins, luxR family J4N40_17920 PF00072 Response regulator receiver domain J4N40_17925 PF07690 Major Facilitator Superfamily J4N40_17930 PF02634 FdhD/NarQ family J4N40_17935 PF03466 LysR substrate binding domain J4N40_17935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_17940 PF00384 Molybdopterin oxidoreductase J4N40_17955 PF02567 Phenazine biosynthesis-like protein J4N40_17960 PF01177 Asp/Glu/Hydantoin racemase J4N40_17965 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4N40_17965 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N40_17975 PF04143 Sulphur transport J4N40_17990 PF13597 Anaerobic ribonucleoside-triphosphate reductase J4N40_17990 PF03477 ATP cone domain J4N40_18000 PF01554 MatE J4N40_18005 PF12833 Helix-turn-helix domain J4N40_18005 PF12852 Cupin J4N40_18010 PF00155 Aminotransferase class I and II J4N40_18015 PF08443 RimK-like ATP-grasp domain J4N40_18015 PF18030 RimK PreATP-grasp domain J4N40_18025 PF04076 Bacterial OB fold (BOF) protein J4N40_18030 PF07685 CobB/CobQ-like glutamine amidotransferase domain J4N40_18030 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J4N40_18040 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_18045 PF00005 ABC transporter J4N40_18045 PF03459 TOBE domain J4N40_18055 PF00360 Phytochrome region J4N40_18055 PF01590 GAF domain J4N40_18055 PF00563 EAL domain J4N40_18055 PF00990 Diguanylate cyclase, GGDEF domain J4N40_18060 PF00990 Diguanylate cyclase, GGDEF domain J4N40_18075 PF01262 Alanine dehydrogenase/PNT, C-terminal domain J4N40_18075 PF05222 Alanine dehydrogenase/PNT, N-terminal domain J4N40_18075 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch J4N40_18080 PF02233 NAD(P) transhydrogenase beta subunit J4N40_18090 PF00486 Transcriptional regulatory protein, C terminal J4N40_18090 PF00072 Response regulator receiver domain J4N40_18105 PF03701 Uncharacterised protein family (UPF0181) J4N40_18120 PF03466 LysR substrate binding domain J4N40_18120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_18150 PF05840 Bacteriophage replication gene A protein (GPA) J4N40_18250 PF01253 Translation initiation factor SUI1 J4N40_18260 PF01820 D-ala D-ala ligase N-terminus J4N40_18260 PF07478 D-ala D-ala ligase C-terminus J4N40_18265 PF05036 Sporulation related domain J4N40_18270 PF00583 Acetyltransferase (GNAT) family J4N40_18270 PF13607 Succinyl-CoA ligase like flavodoxin domain J4N40_18270 PF13380 CoA binding domain J4N40_18275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_18275 PF03466 LysR substrate binding domain J4N40_18280 PF00593 TonB dependent receptor J4N40_18280 PF04886 PT repeat J4N40_18280 PF07715 TonB-dependent Receptor Plug Domain J4N40_18285 PF16363 GDP-mannose 4,6 dehydratase J4N40_18290 PF00990 Diguanylate cyclase, GGDEF domain J4N40_18290 PF05231 MASE1 J4N40_18290 PF08447 PAS fold J4N40_18290 PF08448 PAS fold J4N40_18290 PF13426 PAS domain J4N40_18290 PF00563 EAL domain J4N40_18295 PF03746 LamB/YcsF family J4N40_18300 PF02682 Carboxyltransferase domain, subdomain C and D J4N40_18305 PF02626 Carboxyltransferase domain, subdomain A and B J4N40_18320 PF00005 ABC transporter J4N40_18325 PF13472 GDSL-like Lipase/Acylhydrolase family J4N40_18330 PF07055 Enoyl reductase FAD binding domain J4N40_18330 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase J4N40_18330 PF12241 Trans-2-enoyl-CoA reductase catalytic region J4N40_18335 PF13188 PAS domain J4N40_18335 PF00563 EAL domain J4N40_18335 PF00990 Diguanylate cyclase, GGDEF domain J4N40_18335 PF03707 Bacterial signalling protein N terminal repeat J4N40_18345 PF00226 DnaJ domain J4N40_18345 PF00684 DnaJ central domain J4N40_18345 PF01556 DnaJ C terminal domain J4N40_18370 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N40_18370 PF12793 Sugar transport-related sRNA regulator N-term J4N40_18380 PF03061 Thioesterase superfamily J4N40_18395 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J4N40_18400 PF12262 Bacterial virulence factor lipase N-terminal J4N40_18420 PF03741 Integral membrane protein TerC family J4N40_18425 PF02872 5'-nucleotidase, C-terminal domain J4N40_18425 PF00149 Calcineurin-like phosphoesterase J4N40_18430 PF11398 Protein of unknown function (DUF2813) J4N40_18435 PF06496 Protein of unknown function (DUF1097) J4N40_18440 PF03466 LysR substrate binding domain J4N40_18440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_18445 PF01226 Formate/nitrite transporter J4N40_18450 PF04264 YceI-like domain J4N40_18455 PF01292 Prokaryotic cytochrome b561 J4N40_18475 PF00271 Helicase conserved C-terminal domain J4N40_18475 PF00270 DEAD/DEAH box helicase J4N40_18480 PF04336 Acyl carrier protein phosphodiesterase J4N40_18490 PF12729 Four helix bundle sensory module for signal transduction J4N40_18490 PF00672 HAMP domain J4N40_18490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N40_18495 PF13419 Haloacid dehalogenase-like hydrolase J4N40_18510 PF00294 pfkB family carbohydrate kinase J4N40_18515 PF01268 Formate--tetrahydrofolate ligase J4N40_18520 PF00483 Nucleotidyl transferase J4N40_18525 PF00704 Glycosyl hydrolases family 18 J4N40_18525 PF06483 Chitinase C J4N40_18530 PF06719 AraC-type transcriptional regulator N-terminus J4N40_18530 PF12833 Helix-turn-helix domain J4N40_18535 PF00465 Iron-containing alcohol dehydrogenase J4N40_18545 PF00005 ABC transporter J4N40_18550 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_18555 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N40_18560 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_18565 PF00563 EAL domain J4N40_18565 PF01590 GAF domain J4N40_18565 PF00990 Diguanylate cyclase, GGDEF domain J4N40_18565 PF00989 PAS fold J4N40_18580 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family J4N40_18580 PF00356 Bacterial regulatory proteins, lacI family J4N40_18585 PF00381 PTS HPr component phosphorylation site J4N40_18585 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N40_18590 PF00294 pfkB family carbohydrate kinase J4N40_18595 PF02378 Phosphotransferase system, EIIC J4N40_18595 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N40_18605 PF00873 AcrB/AcrD/AcrF family J4N40_18625 PF08669 Glycine cleavage T-protein C-terminal barrel domain J4N40_18625 PF01571 Aminomethyltransferase folate-binding domain J4N40_18635 PF00464 Serine hydroxymethyltransferase J4N40_18640 PF01597 Glycine cleavage H-protein J4N40_18645 PF02347 Glycine cleavage system P-protein J4N40_18650 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N40_18655 PF00753 Metallo-beta-lactamase superfamily J4N40_18655 PF16123 Hydroxyacylglutathione hydrolase C-terminus J4N40_18660 PF03466 LysR substrate binding domain J4N40_18660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_18665 PF00892 EamA-like transporter family J4N40_18670 PF02627 Carboxymuconolactone decarboxylase family J4N40_18675 PF12833 Helix-turn-helix domain J4N40_18720 PF00929 Exonuclease J4N40_18720 PF02811 PHP domain J4N40_18720 PF14579 Helix-hairpin-helix motif J4N40_18720 PF07733 Bacterial DNA polymerase III alpha NTPase domain J4N40_18720 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J4N40_18720 PF11490 DNA polymerase III polC-type N-terminus II J4N40_18730 PF00664 ABC transporter transmembrane region J4N40_18730 PF00005 ABC transporter J4N40_18750 PF02253 Phospholipase A1 J4N40_18760 PF00376 MerR family regulatory protein J4N40_18760 PF09278 MerR, DNA binding J4N40_18765 PF01327 Polypeptide deformylase J4N40_18795 PF01769 Divalent cation transporter J4N40_18795 PF00571 CBS domain J4N40_18795 PF03448 MgtE intracellular N domain J4N40_18815 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N40_18820 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J4N40_18830 PF01757 Acyltransferase family J4N40_18840 PF09722 Protein of unknown function (DUF2384) J4N40_18845 PF00141 Peroxidase J4N40_18850 PF01645 Conserved region in glutamate synthase J4N40_18850 PF13187 4Fe-4S dicluster domain J4N40_18860 PF00171 Aldehyde dehydrogenase family J4N40_18875 PF00892 EamA-like transporter family J4N40_18880 PF00893 Small Multidrug Resistance protein J4N40_18900 PF00892 EamA-like transporter family J4N40_18910 PF07963 Prokaryotic N-terminal methylation motif J4N40_18910 PF08334 Type II secretion system (T2SS), protein G J4N40_18915 PF01584 CheW-like domain J4N40_18915 PF00072 Response regulator receiver domain J4N40_18920 PF00196 Bacterial regulatory proteins, luxR family J4N40_18920 PF00072 Response regulator receiver domain J4N40_18930 PF00990 Diguanylate cyclase, GGDEF domain J4N40_18935 PF00072 Response regulator receiver domain J4N40_18935 PF00196 Bacterial regulatory proteins, luxR family J4N40_18940 PF13188 PAS domain J4N40_18940 PF03707 Bacterial signalling protein N terminal repeat J4N40_18940 PF00563 EAL domain J4N40_18940 PF00990 Diguanylate cyclase, GGDEF domain J4N40_18945 PF00072 Response regulator receiver domain J4N40_18945 PF09456 RcsC Alpha-Beta-Loop (ABL) J4N40_18945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_18945 PF00512 His Kinase A (phospho-acceptor) domain J4N40_18950 PF01926 50S ribosome-binding GTPase J4N40_18955 PF00155 Aminotransferase class I and II J4N40_18960 PF00072 Response regulator receiver domain J4N40_18960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_18970 PF00814 Glycoprotease family J4N40_18970 PF00583 Acetyltransferase (GNAT) family J4N40_18980 PF03606 C4-dicarboxylate anaerobic carrier J4N40_18995 PF18081 Fanconi anemia-associated nuclease SAP domain J4N40_18995 PF08774 VRR-NUC domain J4N40_19005 PF04076 Bacterial OB fold (BOF) protein J4N40_19010 PF00781 Diacylglycerol kinase catalytic domain J4N40_19015 PF03466 LysR substrate binding domain J4N40_19015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_19020 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J4N40_19035 PF00092 von Willebrand factor type A domain J4N40_19050 PF17863 AAA lid domain J4N40_19050 PF07726 ATPase family associated with various cellular activities (AAA) J4N40_19055 PF13186 Iron-sulfur cluster-binding domain J4N40_19055 PF04055 Radical SAM superfamily J4N40_19060 PF00884 Sulfatase J4N40_19060 PF16385 Domain of unknown function J4N40_19065 PF03466 LysR substrate binding domain J4N40_19065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_19070 PF00884 Sulfatase J4N40_19075 PF00486 Transcriptional regulatory protein, C terminal J4N40_19075 PF00072 Response regulator receiver domain J4N40_19090 PF00672 HAMP domain J4N40_19090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_19090 PF00512 His Kinase A (phospho-acceptor) domain J4N40_19090 PF01627 Hpt domain J4N40_19090 PF00072 Response regulator receiver domain J4N40_19095 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family J4N40_19100 PF02142 MGS-like domain J4N40_19105 PF13361 UvrD-like helicase C-terminal domain J4N40_19105 PF12462 DNA helicase IV / RNA helicase N terminal J4N40_19105 PF00580 UvrD/REP helicase N-terminal domain J4N40_19110 PF12805 FUSC-like inner membrane protein yccS J4N40_19140 PF07715 TonB-dependent Receptor Plug Domain J4N40_19140 PF00593 TonB dependent receptor J4N40_19150 PF13411 MerR HTH family regulatory protein J4N40_19155 PF00005 ABC transporter J4N40_19160 PF01032 FecCD transport family J4N40_19165 PF01032 FecCD transport family J4N40_19170 PF01497 Periplasmic binding protein J4N40_19180 PF01048 Phosphorylase superfamily J4N40_19185 PF04973 Nicotinamide mononucleotide transporter J4N40_19190 PF00356 Bacterial regulatory proteins, lacI family J4N40_19195 PF00294 pfkB family carbohydrate kinase J4N40_19200 PF13407 Periplasmic binding protein domain J4N40_19205 PF02653 Branched-chain amino acid transport system / permease component J4N40_19210 PF00005 ABC transporter J4N40_19215 PF05025 RbsD / FucU transport protein family J4N40_19220 PF00563 EAL domain J4N40_19220 PF00990 Diguanylate cyclase, GGDEF domain J4N40_19265 PF04116 Fatty acid hydroxylase superfamily J4N40_19275 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase J4N40_19275 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain J4N40_19285 PF00512 His Kinase A (phospho-acceptor) domain J4N40_19285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_19285 PF09308 LuxQ, periplasmic J4N40_19285 PF00072 Response regulator receiver domain J4N40_19290 PF03150 Di-haem cytochrome c peroxidase J4N40_19290 PF00034 Cytochrome c J4N40_19300 PF16200 C-terminal region of band_7 J4N40_19300 PF01145 SPFH domain / Band 7 family J4N40_19310 PF00881 Nitroreductase family J4N40_19315 PF00571 CBS domain J4N40_19315 PF00005 ABC transporter J4N40_19320 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_19325 PF04069 Substrate binding domain of ABC-type glycine betaine transport system J4N40_19330 PF00732 GMC oxidoreductase J4N40_19330 PF05199 GMC oxidoreductase J4N40_19335 PF00171 Aldehyde dehydrogenase family J4N40_19340 PF13977 BetI-type transcriptional repressor, C-terminal J4N40_19340 PF00440 Bacterial regulatory proteins, tetR family J4N40_19345 PF00072 Response regulator receiver domain J4N40_19345 PF00990 Diguanylate cyclase, GGDEF domain J4N40_19355 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J4N40_19355 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J4N40_19365 PF00378 Enoyl-CoA hydratase/isomerase J4N40_19370 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J4N40_19370 PF02770 Acyl-CoA dehydrogenase, middle domain J4N40_19370 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J4N40_19375 PF00171 Aldehyde dehydrogenase family J4N40_19380 PF00108 Thiolase, N-terminal domain J4N40_19380 PF02803 Thiolase, C-terminal domain J4N40_19385 PF09278 MerR, DNA binding J4N40_19385 PF00376 MerR family regulatory protein J4N40_19390 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J4N40_19390 PF02770 Acyl-CoA dehydrogenase, middle domain J4N40_19390 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J4N40_19395 PF01039 Carboxyl transferase domain J4N40_19400 PF00378 Enoyl-CoA hydratase/isomerase J4N40_19405 PF00364 Biotin-requiring enzyme J4N40_19405 PF00289 Biotin carboxylase, N-terminal domain J4N40_19405 PF02785 Biotin carboxylase C-terminal domain J4N40_19405 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J4N40_19405 PF18140 Propionyl-coenzyme A carboxylase BT domain J4N40_19410 PF00682 HMGL-like J4N40_19420 PF00924 Mechanosensitive ion channel J4N40_19420 PF12794 Mechanosensitive ion channel inner membrane domain 1 J4N40_19420 PF12795 Mechanosensitive ion channel porin domain J4N40_19425 PF14602 Hexapeptide repeat of succinyl-transferase J4N40_19425 PF12464 Maltose acetyltransferase J4N40_19430 PF00155 Aminotransferase class I and II J4N40_19430 PF00392 Bacterial regulatory proteins, gntR family J4N40_19435 PF01654 Cytochrome bd terminal oxidase subunit I J4N40_19440 PF02322 Cytochrome bd terminal oxidase subunit II J4N40_19450 PF02567 Phenazine biosynthesis-like protein J4N40_19455 PF03466 LysR substrate binding domain J4N40_19455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_19460 PF03306 Alpha-acetolactate decarboxylase J4N40_19465 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J4N40_19465 PF00205 Thiamine pyrophosphate enzyme, central domain J4N40_19465 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J4N40_19470 PF00106 short chain dehydrogenase J4N40_19475 PF02028 BCCT, betaine/carnitine/choline family transporter J4N40_19500 PF05724 Thiopurine S-methyltransferase (TPMT) J4N40_19505 PF00501 AMP-binding enzyme J4N40_19505 PF14535 AMP-binding enzyme C-terminal domain J4N40_19510 PF00005 ABC transporter J4N40_19530 PF00501 AMP-binding enzyme J4N40_19535 PF12399 Branched-chain amino acid ATP-binding cassette transporter J4N40_19535 PF00005 ABC transporter J4N40_19545 PF01012 Electron transfer flavoprotein domain J4N40_19550 PF01012 Electron transfer flavoprotein domain J4N40_19550 PF00766 Electron transfer flavoprotein FAD-binding domain J4N40_19555 PF13193 AMP-binding enzyme C-terminal domain J4N40_19555 PF00501 AMP-binding enzyme J4N40_19560 PF02378 Phosphotransferase system, EIIC J4N40_19560 PF00367 phosphotransferase system, EIIB J4N40_19565 PF11975 Family 4 glycosyl hydrolase C-terminal domain J4N40_19565 PF02056 Family 4 glycosyl hydrolase J4N40_19570 PF07702 UTRA domain J4N40_19570 PF00392 Bacterial regulatory proteins, gntR family J4N40_19575 PF03334 Na+/H+ antiporter subunit J4N40_19580 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) J4N40_19585 PF01899 Na+/H+ ion antiporter subunit J4N40_19590 PF00361 Proton-conducting membrane transporter J4N40_19595 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L J4N40_19600 PF13244 Domain of unknown function (DUF4040) J4N40_19600 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter J4N40_19600 PF00361 Proton-conducting membrane transporter J4N40_19600 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J4N40_19610 PF00582 Universal stress protein family J4N40_19615 PF00106 short chain dehydrogenase J4N40_19620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_19620 PF03466 LysR substrate binding domain J4N40_19630 PF07690 Major Facilitator Superfamily J4N40_19665 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE J4N40_19695 PF01037 Lrp/AsnC ligand binding domain J4N40_19705 PF05947 Type VI secretion system, TssF J4N40_19715 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath J4N40_19730 PF00069 Protein kinase domain J4N40_19755 PF04717 Type VI secretion system, phage-baseplate injector J4N40_19760 PF05638 Type VI secretion system effector, Hcp J4N40_19765 PF00004 ATPase family associated with various cellular activities (AAA) J4N40_19765 PF07724 AAA domain (Cdc48 subfamily) J4N40_19765 PF17871 AAA lid domain J4N40_19765 PF10431 C-terminal, D2-small domain, of ClpB protein J4N40_19770 PF02954 Bacterial regulatory protein, Fis family J4N40_19770 PF00072 Response regulator receiver domain J4N40_19770 PF00158 Sigma-54 interaction domain J4N40_19795 PF01551 Peptidase family M23 J4N40_19810 PF01699 Sodium/calcium exchanger protein J4N40_19825 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N40_19835 PF12833 Helix-turn-helix domain J4N40_19840 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N40_19840 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N40_19845 PF01238 Phosphomannose isomerase type I J4N40_19860 PF17678 Glycosyl hydrolase family 92 N-terminal domain J4N40_19860 PF07971 Glycosyl hydrolase family 92 J4N40_19865 PF07971 Glycosyl hydrolase family 92 J4N40_19865 PF17678 Glycosyl hydrolase family 92 N-terminal domain J4N40_19870 PF07971 Glycosyl hydrolase family 92 J4N40_19870 PF17678 Glycosyl hydrolase family 92 N-terminal domain J4N40_19885 PF00478 IMP dehydrogenase / GMP reductase domain J4N40_19890 PF03853 YjeF-related protein N-terminus J4N40_19890 PF01256 Carbohydrate kinase J4N40_19900 PF00072 Response regulator receiver domain J4N40_19905 PF00248 Aldo/keto reductase family J4N40_19920 PF00654 Voltage gated chloride channel J4N40_19930 PF01227 GTP cyclohydrolase I J4N40_19935 PF00994 Probable molybdopterin binding domain J4N40_19935 PF03454 MoeA C-terminal region (domain IV) J4N40_19935 PF03453 MoeA N-terminal region (domain I and II) J4N40_19940 PF00899 ThiF family J4N40_19955 PF00581 Rhodanese-like domain J4N40_19965 PF00923 Transaldolase/Fructose-6-phosphate aldolase J4N40_19970 PF02779 Transketolase, pyrimidine binding domain J4N40_19970 PF02780 Transketolase, C-terminal domain J4N40_19970 PF00456 Transketolase, thiamine diphosphate binding domain J4N40_19975 PF08447 PAS fold J4N40_19975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N40_19980 PF07690 Major Facilitator Superfamily J4N40_19985 PF00793 DAHP synthetase I family J4N40_19995 PF00691 OmpA family J4N40_19995 PF01389 OmpA-like transmembrane domain J4N40_20000 PF13419 Haloacid dehalogenase-like hydrolase J4N40_20005 PF00472 RF-1 domain J4N40_20010 PF12729 Four helix bundle sensory module for signal transduction J4N40_20010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N40_20010 PF00672 HAMP domain J4N40_20015 PF00873 AcrB/AcrD/AcrF family J4N40_20020 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N40_20025 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J4N40_20030 PF07687 Peptidase dimerisation domain J4N40_20030 PF01546 Peptidase family M20/M25/M40 J4N40_20045 PF00072 Response regulator receiver domain J4N40_20045 PF00196 Bacterial regulatory proteins, luxR family J4N40_20050 PF07730 Histidine kinase J4N40_20050 PF00672 HAMP domain J4N40_20050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_20050 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term J4N40_20055 PF13187 4Fe-4S dicluster domain J4N40_20055 PF12838 4Fe-4S dicluster domain J4N40_20065 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J4N40_20065 PF00384 Molybdopterin oxidoreductase J4N40_20065 PF01568 Molydopterin dinucleotide binding domain J4N40_20070 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) J4N40_20075 PF03264 NapC/NirT cytochrome c family, N-terminal region J4N40_20085 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus J4N40_20095 PF02803 Thiolase, C-terminal domain J4N40_20095 PF00108 Thiolase, N-terminal domain J4N40_20100 PF00106 short chain dehydrogenase J4N40_20105 PF01810 LysE type translocator J4N40_20115 PF02355 Protein export membrane protein J4N40_20115 PF07549 SecD/SecF GG Motif J4N40_20120 PF02355 Protein export membrane protein J4N40_20120 PF07549 SecD/SecF GG Motif J4N40_20120 PF13721 SecD export protein N-terminal TM region J4N40_20145 PF01037 Lrp/AsnC ligand binding domain J4N40_20165 PF00529 HlyD membrane-fusion protein of T1SS J4N40_20165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N40_20170 PF01047 MarR family J4N40_20175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_20175 PF00072 Response regulator receiver domain J4N40_20175 PF09308 LuxQ, periplasmic J4N40_20175 PF00512 His Kinase A (phospho-acceptor) domain J4N40_20180 PF13407 Periplasmic binding protein domain J4N40_20185 PF01541 GIY-YIG catalytic domain J4N40_20190 PF04337 Protein of unknown function, DUF480 J4N40_20200 PF04363 Protein of unknown function (DUF496) J4N40_20205 PF01554 MatE J4N40_20215 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J4N40_20215 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J4N40_20230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_20230 PF03466 LysR substrate binding domain J4N40_20240 PF13520 Amino acid permease J4N40_20245 PF00155 Aminotransferase class I and II J4N40_20245 PF00392 Bacterial regulatory proteins, gntR family J4N40_20255 PF00512 His Kinase A (phospho-acceptor) domain J4N40_20255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_20255 PF00672 HAMP domain J4N40_20255 PF16527 Two-component sensor protein CpxA, periplasmic domain J4N40_20260 PF00486 Transcriptional regulatory protein, C terminal J4N40_20260 PF00072 Response regulator receiver domain J4N40_20275 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term J4N40_20275 PF12833 Helix-turn-helix domain J4N40_20285 PF00529 HlyD membrane-fusion protein of T1SS J4N40_20285 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N40_20290 PF03109 ABC1 family J4N40_20295 PF00571 CBS domain J4N40_20295 PF01769 Divalent cation transporter J4N40_20295 PF03448 MgtE intracellular N domain J4N40_20300 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin J4N40_20305 PF07969 Amidohydrolase family J4N40_20310 PF01966 HD domain J4N40_20320 PF07690 Major Facilitator Superfamily J4N40_20330 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase J4N40_20335 PF00255 Glutathione peroxidase J4N40_20350 PF01323 DSBA-like thioredoxin domain J4N40_20365 PF00486 Transcriptional regulatory protein, C terminal J4N40_20365 PF00072 Response regulator receiver domain J4N40_20370 PF16527 Two-component sensor protein CpxA, periplasmic domain J4N40_20370 PF00672 HAMP domain J4N40_20370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_20370 PF00512 His Kinase A (phospho-acceptor) domain J4N40_20380 PF01219 Prokaryotic diacylglycerol kinase J4N40_20385 PF00884 Sulfatase J4N40_20385 PF08019 Phosphoethanolamine transferase EptA/EptB J4N40_20390 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J4N40_20405 PF01734 Patatin-like phospholipase J4N40_20410 PF02678 Pirin J4N40_20410 PF05726 Pirin C-terminal cupin domain J4N40_20415 PF00313 'Cold-shock' DNA-binding domain J4N40_20430 PF00962 Adenosine/AMP deaminase J4N40_20435 PF08534 Redoxin J4N40_20435 PF00462 Glutaredoxin J4N40_20445 PF00768 D-alanyl-D-alanine carboxypeptidase J4N40_20445 PF07943 Penicillin-binding protein 5, C-terminal domain J4N40_20450 PF02798 Glutathione S-transferase, N-terminal domain J4N40_20455 PF02909 Tetracyclin repressor-like, C-terminal domain J4N40_20455 PF00440 Bacterial regulatory proteins, tetR family J4N40_20460 PF01872 RibD C-terminal domain J4N40_20465 PF08244 Glycosyl hydrolases family 32 C terminal J4N40_20465 PF00251 Glycosyl hydrolases family 32 N-terminal domain J4N40_20470 PF00294 pfkB family carbohydrate kinase J4N40_20475 PF00367 phosphotransferase system, EIIB J4N40_20475 PF02378 Phosphotransferase system, EIIC J4N40_20480 PF00356 Bacterial regulatory proteins, lacI family J4N40_20485 PF02264 LamB porin J4N40_20485 PF11471 Maltoporin periplasmic N-terminal extension J4N40_20530 PF00106 short chain dehydrogenase J4N40_20535 PF03466 LysR substrate binding domain J4N40_20535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_20540 PF01497 Periplasmic binding protein J4N40_20540 PF12833 Helix-turn-helix domain J4N40_20545 PF00155 Aminotransferase class I and II J4N40_20565 PF00271 Helicase conserved C-terminal domain J4N40_20565 PF00270 DEAD/DEAH box helicase J4N40_20575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_20575 PF03466 LysR substrate binding domain J4N40_20580 PF03466 LysR substrate binding domain J4N40_20580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_20590 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J4N40_20595 PF00107 Zinc-binding dehydrogenase J4N40_20595 PF08240 Alcohol dehydrogenase GroES-like domain J4N40_20615 PF00392 Bacterial regulatory proteins, gntR family J4N40_20615 PF00155 Aminotransferase class I and II J4N40_20620 PF01321 Creatinase/Prolidase N-terminal domain J4N40_20620 PF00557 Metallopeptidase family M24 J4N40_20625 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family J4N40_20630 PF01037 Lrp/AsnC ligand binding domain J4N40_20635 PF00171 Aldehyde dehydrogenase family J4N40_20640 PF00202 Aminotransferase class-III J4N40_20645 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) J4N40_20660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_20660 PF03466 LysR substrate binding domain J4N40_20665 PF00709 Adenylosuccinate synthetase J4N40_20670 PF17763 Glutaminase/Asparaginase C-terminal domain J4N40_20670 PF00710 Asparaginase, N-terminal J4N40_20675 PF03618 Kinase/pyrophosphorylase J4N40_20680 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain J4N40_20680 PF02896 PEP-utilising enzyme, TIM barrel domain J4N40_20680 PF00391 PEP-utilising enzyme, mobile domain J4N40_20690 PF00196 Bacterial regulatory proteins, luxR family J4N40_20690 PF00072 Response regulator receiver domain J4N40_20695 PF00579 tRNA synthetases class I (W and Y) J4N40_20700 PF13416 Bacterial extracellular solute-binding protein J4N40_20715 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 J4N40_20715 PF00703 Glycosyl hydrolases family 2 J4N40_20715 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J4N40_20715 PF02837 Glycosyl hydrolases family 2, sugar binding domain J4N40_20720 PF02028 BCCT, betaine/carnitine/choline family transporter J4N40_20725 PF00392 Bacterial regulatory proteins, gntR family J4N40_20725 PF07702 UTRA domain J4N40_20750 PF08402 TOBE domain J4N40_20750 PF00005 ABC transporter J4N40_20770 PF00873 AcrB/AcrD/AcrF family J4N40_20790 PF00873 AcrB/AcrD/AcrF family J4N40_20800 PF13091 PLD-like domain J4N40_20805 PF00398 Ribosomal RNA adenine dimethylase J4N40_20825 PF00376 MerR family regulatory protein J4N40_20825 PF09278 MerR, DNA binding J4N40_20835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_20835 PF03466 LysR substrate binding domain J4N40_20845 PF13378 Enolase C-terminal domain-like J4N40_20845 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J4N40_20850 PF00679 Elongation factor G C-terminus J4N40_20850 PF00009 Elongation factor Tu GTP binding domain J4N40_20850 PF03764 Elongation factor G, domain IV J4N40_20850 PF03144 Elongation factor Tu domain 2 J4N40_20850 PF14492 Elongation Factor G, domain II J4N40_20875 PF02001 Protein of unknown function DUF134 J4N40_20880 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_20885 PF00005 ABC transporter J4N40_20885 PF00571 CBS domain J4N40_20890 PF17185 NlpE C-terminal OB domain J4N40_20890 PF04170 NlpE N-terminal domain J4N40_20895 PF06629 MltA-interacting protein MipA J4N40_20910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_20910 PF03466 LysR substrate binding domain J4N40_20935 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family J4N40_20935 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain J4N40_20945 PF00857 Isochorismatase family J4N40_20960 PF00455 DeoR C terminal sensor domain J4N40_20960 PF08220 DeoR-like helix-turn-helix domain J4N40_20965 PF01625 Peptide methionine sulfoxide reductase J4N40_20965 PF01641 SelR domain J4N40_20970 PF03060 Nitronate monooxygenase J4N40_20975 PF13520 Amino acid permease J4N40_20980 PF05985 Ethanolamine ammonia-lyase light chain (EutC) J4N40_20985 PF06751 Ethanolamine ammonia lyase large subunit (EutB) J4N40_20990 PF12833 Helix-turn-helix domain J4N40_20995 PF08359 YsiA-like protein, C-terminal region J4N40_20995 PF00440 Bacterial regulatory proteins, tetR family J4N40_21010 PF03466 LysR substrate binding domain J4N40_21010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_21015 PF01810 LysE type translocator J4N40_21025 PF00118 TCP-1/cpn60 chaperonin family J4N40_21030 PF00166 Chaperonin 10 Kd subunit J4N40_21035 PF00581 Rhodanese-like domain J4N40_21050 PF01070 FMN-dependent dehydrogenase J4N40_21070 PF00669 Bacterial flagellin N-terminal helical region J4N40_21075 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N40_21075 PF00460 Flagella basal body rod protein J4N40_21080 PF10135 Rod binding protein J4N40_21080 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase J4N40_21085 PF02119 Flagellar P-ring protein J4N40_21090 PF02107 Flagellar L-ring protein J4N40_21095 PF00460 Flagella basal body rod protein J4N40_21095 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N40_21100 PF00460 Flagella basal body rod protein J4N40_21100 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N40_21105 PF07559 Flagellar basal body protein FlaE J4N40_21105 PF00460 Flagella basal body rod protein J4N40_21105 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N40_21110 PF13860 FlgD Ig-like domain J4N40_21110 PF13861 FlgD Tudor-like domain J4N40_21110 PF03963 Flagellar hook capping protein - N-terminal region J4N40_21115 PF00460 Flagella basal body rod protein J4N40_21115 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N40_21120 PF00460 Flagella basal body rod protein J4N40_21140 PF01464 Transglycosylase SLT domain J4N40_21145 PF00133 tRNA synthetases class I (I, L, M and V) J4N40_21145 PF08264 Anticodon-binding domain of tRNA J4N40_21165 PF03313 Serine dehydratase alpha chain J4N40_21165 PF03315 Serine dehydratase beta chain J4N40_21175 PF03466 LysR substrate binding domain J4N40_21175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_21180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_21180 PF03466 LysR substrate binding domain J4N40_21185 PF00691 OmpA family J4N40_21185 PF01389 OmpA-like transmembrane domain J4N40_21190 PF00246 Zinc carboxypeptidase J4N40_21190 PF18027 Cytosolic carboxypeptidase N-terminal domain J4N40_21195 PF01266 FAD dependent oxidoreductase J4N40_21205 PF04393 Protein of unknown function (DUF535) J4N40_21220 PF07702 UTRA domain J4N40_21220 PF00392 Bacterial regulatory proteins, gntR family J4N40_21225 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_21230 PF00005 ABC transporter J4N40_21240 PF00266 Aminotransferase class-V J4N40_21245 PF00202 Aminotransferase class-III J4N40_21250 PF13419 Haloacid dehalogenase-like hydrolase J4N40_21255 PF00356 Bacterial regulatory proteins, lacI family J4N40_21260 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N40_21270 PF03611 PTS system sugar-specific permease component J4N40_21280 PF05922 Peptidase inhibitor I9 J4N40_21280 PF00082 Subtilase family J4N40_21285 PF00657 GDSL-like Lipase/Acylhydrolase J4N40_21290 PF00440 Bacterial regulatory proteins, tetR family J4N40_21300 PF02321 Outer membrane efflux protein J4N40_21305 PF12704 MacB-like periplasmic core domain J4N40_21305 PF00005 ABC transporter J4N40_21305 PF02687 FtsX-like permease family J4N40_21310 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N40_21315 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J4N40_21320 PF00194 Eukaryotic-type carbonic anhydrase J4N40_21325 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) J4N40_21340 PF13419 Haloacid dehalogenase-like hydrolase J4N40_21345 PF03466 LysR substrate binding domain J4N40_21345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_21375 PF14602 Hexapeptide repeat of succinyl-transferase J4N40_21375 PF12464 Maltose acetyltransferase J4N40_21380 PF02566 OsmC-like protein J4N40_21385 PF01625 Peptide methionine sulfoxide reductase J4N40_21385 PF01641 SelR domain J4N40_21400 PF04244 Deoxyribodipyrimidine photo-lyase-related protein J4N40_21405 PF00875 DNA photolyase J4N40_21405 PF03441 FAD binding domain of DNA photolyase J4N40_21410 PF00990 Diguanylate cyclase, GGDEF domain J4N40_21425 PF00990 Diguanylate cyclase, GGDEF domain J4N40_21425 PF05230 MASE2 domain J4N40_21440 PF07670 Nucleoside recognition J4N40_21440 PF01773 Na+ dependent nucleoside transporter N-terminus J4N40_21440 PF07662 Na+ dependent nucleoside transporter C-terminus J4N40_21455 PF01212 Beta-eliminating lyase J4N40_21460 PF03116 NQR2, RnfD, RnfE family J4N40_21465 PF01654 Cytochrome bd terminal oxidase subunit I J4N40_21470 PF02322 Cytochrome bd terminal oxidase subunit II J4N40_21485 PF00182 Chitinase class I J4N40_21490 PF01266 FAD dependent oxidoreductase J4N40_21505 PF05525 Branched-chain amino acid transport protein J4N40_21510 PF00990 Diguanylate cyclase, GGDEF domain J4N40_21515 PF02954 Bacterial regulatory protein, Fis family J4N40_21515 PF00072 Response regulator receiver domain J4N40_21515 PF00158 Sigma-54 interaction domain J4N40_21520 PF00512 His Kinase A (phospho-acceptor) domain J4N40_21520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_21520 PF02743 Cache domain J4N40_21525 PF00232 Glycosyl hydrolase family 1 J4N40_21540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_21540 PF03466 LysR substrate binding domain J4N40_21550 PF12706 Beta-lactamase superfamily domain J4N40_21560 PF08443 RimK-like ATP-grasp domain J4N40_21560 PF18030 RimK PreATP-grasp domain J4N40_21565 PF08443 RimK-like ATP-grasp domain J4N40_21565 PF18030 RimK PreATP-grasp domain J4N40_21570 PF00753 Metallo-beta-lactamase superfamily J4N40_21575 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J4N40_21575 PF17944 Arginine decarboxylase C-terminal helical extension J4N40_21575 PF17810 Arginine decarboxylase helical bundle domain J4N40_21580 PF00491 Arginase family J4N40_21585 PF07690 Major Facilitator Superfamily J4N40_21590 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain J4N40_21590 PF00326 Prolyl oligopeptidase family J4N40_21605 PF00950 ABC 3 transport family J4N40_21610 PF00005 ABC transporter J4N40_21615 PF01297 Zinc-uptake complex component A periplasmic J4N40_21660 PF02472 Biopolymer transport protein ExbD/TolR J4N40_21665 PF01618 MotA/TolQ/ExbB proton channel family J4N40_21670 PF01618 MotA/TolQ/ExbB proton channel family J4N40_21680 PF07715 TonB-dependent Receptor Plug Domain J4N40_21680 PF00593 TonB dependent receptor J4N40_21685 PF16750 Sensor domain of 2-component histidine kinase J4N40_21685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_21685 PF00672 HAMP domain J4N40_21685 PF00512 His Kinase A (phospho-acceptor) domain J4N40_21690 PF00072 Response regulator receiver domain J4N40_21690 PF00486 Transcriptional regulatory protein, C terminal J4N40_21695 PF03009 Glycerophosphoryl diester phosphodiesterase family J4N40_21705 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J4N40_21705 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N40_21710 PF10928 Protein of unknown function (DUF2810) J4N40_21765 PF04013 Putative SAM-dependent RNA methyltransferase J4N40_21770 PF01523 Putative modulator of DNA gyrase J4N40_21775 PF01523 Putative modulator of DNA gyrase J4N40_21780 PF08543 Phosphomethylpyrimidine kinase J4N40_21785 PF00005 ABC transporter J4N40_21790 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_21795 PF09084 NMT1/THI5 like J4N40_21800 PF03070 TENA/THI-4/PQQC family J4N40_21805 PF02110 Hydroxyethylthiazole kinase family J4N40_21810 PF02581 Thiamine monophosphate synthase J4N40_21820 PF01568 Molydopterin dinucleotide binding domain J4N40_21820 PF00384 Molybdopterin oxidoreductase J4N40_21820 PF18364 Molybdopterin oxidoreductase N-terminal domain J4N40_21825 PF03264 NapC/NirT cytochrome c family, N-terminal region J4N40_21830 PF13302 Acetyltransferase (GNAT) domain J4N40_21850 PF00583 Acetyltransferase (GNAT) family J4N40_21870 PF00155 Aminotransferase class I and II J4N40_21870 PF00392 Bacterial regulatory proteins, gntR family J4N40_21875 PF02595 Glycerate kinase family J4N40_21880 PF02447 GntP family permease J4N40_21885 PF13556 PucR C-terminal helix-turn-helix domain J4N40_21885 PF05651 Putative sugar diacid recognition J4N40_21885 PF17853 GGDEF-like domain J4N40_21920 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N40_21925 PF12706 Beta-lactamase superfamily domain J4N40_21935 PF07690 Major Facilitator Superfamily J4N40_21940 PF13533 Biotin-lipoyl like J4N40_21945 PF03922 OmpW family J4N40_21950 PF13599 Pentapeptide repeats (9 copies) J4N40_21970 PF01037 Lrp/AsnC ligand binding domain J4N40_21975 PF01810 LysE type translocator J4N40_21980 PF08021 Siderophore-interacting FAD-binding domain J4N40_21980 PF04954 Siderophore-interacting protein J4N40_21985 PF03466 LysR substrate binding domain J4N40_21985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_21990 PF00797 N-acetyltransferase J4N40_21995 PF00107 Zinc-binding dehydrogenase J4N40_21995 PF08240 Alcohol dehydrogenase GroES-like domain J4N40_22000 PF00756 Putative esterase J4N40_22010 PF00990 Diguanylate cyclase, GGDEF domain J4N40_22010 PF17152 Periplasmic sensor domain J4N40_22025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_22025 PF03466 LysR substrate binding domain J4N40_22040 PF00849 RNA pseudouridylate synthase J4N40_22045 PF01554 MatE J4N40_22050 PF03707 Bacterial signalling protein N terminal repeat J4N40_22050 PF00563 EAL domain J4N40_22050 PF00990 Diguanylate cyclase, GGDEF domain J4N40_22060 PF06865 Pyrimidine/purine nucleoside phosphorylase J4N40_22070 PF00704 Glycosyl hydrolases family 18 J4N40_22070 PF08329 Chitinase A, N-terminal domain J4N40_22075 PF12697 Alpha/beta hydrolase family J4N40_22090 PF03600 Citrate transporter J4N40_22100 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 J4N40_22110 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J4N40_22110 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain J4N40_22115 PF12833 Helix-turn-helix domain J4N40_22115 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J4N40_22115 PF02805 Metal binding domain of Ada J4N40_22115 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain J4N40_22125 PF07681 DoxX J4N40_22130 PF17954 Quercetinase C-terminal cupin domain J4N40_22130 PF02678 Pirin J4N40_22135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_22135 PF03466 LysR substrate binding domain J4N40_22150 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase J4N40_22160 PF03616 Sodium/glutamate symporter J4N40_22165 PF00155 Aminotransferase class I and II J4N40_22165 PF00392 Bacterial regulatory proteins, gntR family J4N40_22170 PF00005 ABC transporter J4N40_22180 PF03616 Sodium/glutamate symporter J4N40_22195 PF17200 Single Cache domain 2 J4N40_22195 PF00672 HAMP domain J4N40_22195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N40_22200 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J4N40_22205 PF00072 Response regulator receiver domain J4N40_22205 PF04397 LytTr DNA-binding domain J4N40_22210 PF07694 5TMR of 5TMR-LYT J4N40_22210 PF13492 GAF domain J4N40_22210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_22210 PF06580 Histidine kinase J4N40_22230 PF00005 ABC transporter J4N40_22240 PF01098 Cell cycle protein J4N40_22245 PF01709 Transcriptional regulator J4N40_22255 PF01627 Hpt domain J4N40_22255 PF00072 Response regulator receiver domain J4N40_22255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_22255 PF00672 HAMP domain J4N40_22255 PF00512 His Kinase A (phospho-acceptor) domain J4N40_22255 PF17149 Periplasmic sensor domain found in signal transduction proteins J4N40_22265 PF08719 Domain of unknown function (DUF1768) J4N40_22265 PF00925 GTP cyclohydrolase II J4N40_22275 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N40_22275 PF00005 ABC transporter J4N40_22280 PF00005 ABC transporter J4N40_22280 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N40_22295 PF13614 AAA domain J4N40_22295 PF18607 ParA helix turn helix domain J4N40_22300 PF08775 ParB family J4N40_22300 PF02195 ParB-like nuclease domain J4N40_22305 PF13718 GNAT acetyltransferase 2 J4N40_22305 PF05127 Helicase J4N40_22315 PF00132 Bacterial transferase hexapeptide (six repeats) J4N40_22325 PF00267 Gram-negative porin J4N40_22330 PF00367 phosphotransferase system, EIIB J4N40_22330 PF02378 Phosphotransferase system, EIIC J4N40_22335 PF01380 SIS domain J4N40_22340 PF01418 Helix-turn-helix domain, rpiR family J4N40_22340 PF01380 SIS domain J4N40_22345 PF00246 Zinc carboxypeptidase J4N40_22350 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N40_22355 PF03358 NADPH-dependent FMN reductase J4N40_22365 PF03412 Peptidase C39 family J4N40_22365 PF00664 ABC transporter transmembrane region J4N40_22365 PF00005 ABC transporter J4N40_22380 PF00529 HlyD membrane-fusion protein of T1SS J4N40_22385 PF00072 Response regulator receiver domain J4N40_22385 PF00158 Sigma-54 interaction domain J4N40_22385 PF02954 Bacterial regulatory protein, Fis family J4N40_22390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_22390 PF00512 His Kinase A (phospho-acceptor) domain J4N40_22390 PF02743 Cache domain J4N40_22395 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region J4N40_22395 PF01243 Pyridoxamine 5'-phosphate oxidase J4N40_22405 PF12833 Helix-turn-helix domain J4N40_22410 PF18327 Proline utilization A proline dehydrogenase N-terminal domain J4N40_22410 PF00171 Aldehyde dehydrogenase family J4N40_22410 PF01619 Proline dehydrogenase J4N40_22410 PF14850 DNA-binding domain of Proline dehydrogenase J4N40_22420 PF00474 Sodium:solute symporter family J4N40_22445 PF01037 Lrp/AsnC ligand binding domain J4N40_22455 PF00005 ABC transporter J4N40_22455 PF00664 ABC transporter transmembrane region J4N40_22465 PF00270 DEAD/DEAH box helicase J4N40_22465 PF00271 Helicase conserved C-terminal domain J4N40_22470 PF03475 3-alpha domain J4N40_22470 PF03473 MOSC domain J4N40_22490 PF04542 Sigma-70 region 2 J4N40_22490 PF08281 Sigma-70, region 4 J4N40_22495 PF01965 DJ-1/PfpI family J4N40_22495 PF12833 Helix-turn-helix domain J4N40_22500 PF03466 LysR substrate binding domain J4N40_22500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_22520 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N40_22520 PF13192 Thioredoxin domain J4N40_22525 PF10417 C-terminal domain of 1-Cys peroxiredoxin J4N40_22525 PF00578 AhpC/TSA family J4N40_22530 PF01047 MarR family J4N40_22535 PF02566 OsmC-like protein J4N40_22555 PF02311 AraC-like ligand binding domain J4N40_22555 PF12833 Helix-turn-helix domain J4N40_22580 PF02687 FtsX-like permease family J4N40_22580 PF12704 MacB-like periplasmic core domain J4N40_22585 PF00005 ABC transporter J4N40_22595 PF01136 Peptidase family U32 J4N40_22605 PF02378 Phosphotransferase system, EIIC J4N40_22605 PF00367 phosphotransferase system, EIIB J4N40_22610 PF00072 Response regulator receiver domain J4N40_22610 PF00486 Transcriptional regulatory protein, C terminal J4N40_22615 PF08521 Two-component sensor kinase N-terminal J4N40_22615 PF00512 His Kinase A (phospho-acceptor) domain J4N40_22615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_22620 PF01547 Bacterial extracellular solute-binding protein J4N40_22625 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain J4N40_22625 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J4N40_22630 PF06276 Ferric iron reductase FhuF-like transporter J4N40_22630 PF04183 IucA / IucC family J4N40_22640 PF06276 Ferric iron reductase FhuF-like transporter J4N40_22640 PF04183 IucA / IucC family J4N40_22645 PF02655 ATP-grasp domain J4N40_22645 PF00206 Lyase J4N40_22650 PF07715 TonB-dependent Receptor Plug Domain J4N40_22650 PF00593 TonB dependent receptor J4N40_22655 PF07715 TonB-dependent Receptor Plug Domain J4N40_22655 PF07660 Secretin and TonB N terminus short domain J4N40_22655 PF00593 TonB dependent receptor J4N40_22660 PF01497 Periplasmic binding protein J4N40_22665 PF01032 FecCD transport family J4N40_22670 PF01032 FecCD transport family J4N40_22675 PF00005 ABC transporter J4N40_22680 PF17200 Single Cache domain 2 J4N40_22680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N40_22680 PF00672 HAMP domain J4N40_22685 PF00675 Insulinase (Peptidase family M16) J4N40_22685 PF05193 Peptidase M16 inactive domain J4N40_22710 PF07690 Major Facilitator Superfamily J4N40_22715 PF02796 Helix-turn-helix domain of resolvase J4N40_22715 PF00239 Resolvase, N terminal domain J4N40_22720 PF00356 Bacterial regulatory proteins, lacI family J4N40_22725 PF00474 Sodium:solute symporter family J4N40_22740 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J4N40_22740 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component J4N40_22750 PF03480 Bacterial extracellular solute-binding protein, family 7 J4N40_22755 PF00356 Bacterial regulatory proteins, lacI family J4N40_22760 PF03328 HpcH/HpaI aldolase/citrate lyase family J4N40_22780 PF12697 Alpha/beta hydrolase family J4N40_22795 PF07690 Major Facilitator Superfamily J4N40_22800 PF00474 Sodium:solute symporter family J4N40_22805 PF03315 Serine dehydratase beta chain J4N40_22805 PF03313 Serine dehydratase alpha chain J4N40_22810 PF00128 Alpha amylase, catalytic domain J4N40_22810 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J4N40_22815 PF02264 LamB porin J4N40_22830 PF16657 Maltogenic Amylase, C-terminal domain J4N40_22830 PF00128 Alpha amylase, catalytic domain J4N40_22830 PF02903 Alpha amylase, N-terminal ig-like domain J4N40_22835 PF04231 Endonuclease I J4N40_22840 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J4N40_22840 PF11852 Domain of unknown function (DUF3372) J4N40_22840 PF03714 Bacterial pullanase-associated domain J4N40_22840 PF18494 Pullulanase Ins domain J4N40_22840 PF17967 Pullulanase N2 domain J4N40_22855 PF08543 Phosphomethylpyrimidine kinase J4N40_22860 PF00375 Sodium:dicarboxylate symporter family J4N40_22865 PF03193 RsgA GTPase J4N40_22870 PF00367 phosphotransferase system, EIIB J4N40_22870 PF02378 Phosphotransferase system, EIIC J4N40_22875 PF02630 SCO1/SenC J4N40_22890 PF00196 Bacterial regulatory proteins, luxR family J4N40_22890 PF17874 MalT-like TPR region J4N40_22895 PF00343 Carbohydrate phosphorylase J4N40_22900 PF02446 4-alpha-glucanotransferase J4N40_22905 PF00128 Alpha amylase, catalytic domain J4N40_22905 PF02806 Alpha amylase, C-terminal all-beta domain J4N40_22905 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J4N40_22915 PF00128 Alpha amylase, catalytic domain J4N40_22930 PF07670 Nucleoside recognition J4N40_22935 PF07670 Nucleoside recognition J4N40_22940 PF07687 Peptidase dimerisation domain J4N40_22940 PF01546 Peptidase family M20/M25/M40 J4N40_22945 PF06803 Protein of unknown function (DUF1232) J4N40_22960 PF00375 Sodium:dicarboxylate symporter family J4N40_22970 PF03466 LysR substrate binding domain J4N40_22970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_22975 PF08803 Putative mono-oxygenase ydhR J4N40_22985 PF13614 AAA domain J4N40_22985 PF13807 G-rich domain on putative tyrosine kinase J4N40_22985 PF02706 Chain length determinant protein J4N40_22990 PF01451 Low molecular weight phosphotyrosine protein phosphatase J4N40_22995 PF10531 SLBB domain J4N40_22995 PF02563 Polysaccharide biosynthesis/export protein J4N40_22995 PF18412 Outer-membrane lipoprotein Wza C-terminal domain J4N40_23000 PF00881 Nitroreductase family J4N40_23005 PF01914 MarC family integral membrane protein J4N40_23010 PF01734 Patatin-like phospholipase J4N40_23015 PF18416 N-acetylglucosamine binding protein domain 2 J4N40_23015 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading J4N40_23020 PF02469 Fasciclin domain J4N40_23025 PF00875 DNA photolyase J4N40_23025 PF03441 FAD binding domain of DNA photolyase J4N40_23035 PF00581 Rhodanese-like domain J4N40_23035 PF17773 UPF0176 acylphosphatase like domain J4N40_23040 PF00561 alpha/beta hydrolase fold J4N40_23045 PF07943 Penicillin-binding protein 5, C-terminal domain J4N40_23045 PF00768 D-alanyl-D-alanine carboxypeptidase J4N40_23050 PF00128 Alpha amylase, catalytic domain J4N40_23050 PF00686 Starch binding domain J4N40_23055 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term J4N40_23055 PF12833 Helix-turn-helix domain J4N40_23060 PF00881 Nitroreductase family J4N40_23070 PF03466 LysR substrate binding domain J4N40_23070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_23075 PF09905 DNA-binding protein VF530 J4N40_23085 PF00970 Oxidoreductase FAD-binding domain J4N40_23085 PF00175 Oxidoreductase NAD-binding domain J4N40_23095 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) J4N40_23100 PF01594 AI-2E family transporter J4N40_23110 PF13533 Biotin-lipoyl like J4N40_23130 PF00892 EamA-like transporter family J4N40_23135 PF03466 LysR substrate binding domain J4N40_23135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_23140 PF07690 Major Facilitator Superfamily J4N40_23160 PF00072 Response regulator receiver domain J4N40_23160 PF00486 Transcriptional regulatory protein, C terminal J4N40_23165 PF00672 HAMP domain J4N40_23165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_23165 PF00512 His Kinase A (phospho-acceptor) domain J4N40_23180 PF00923 Transaldolase/Fructose-6-phosphate aldolase J4N40_23185 PF04055 Radical SAM superfamily J4N40_23190 PF01228 Glycine radical J4N40_23190 PF02901 Pyruvate formate lyase-like J4N40_23210 PF08000 Bacterial PH domain J4N40_23215 PF00691 OmpA family J4N40_23215 PF13677 Membrane MotB of proton-channel complex MotA/MotB J4N40_23220 PF01618 MotA/TolQ/ExbB proton channel family J4N40_23225 PF04545 Sigma-70, region 4 J4N40_23225 PF04542 Sigma-70 region 2 J4N40_23230 PF03748 Flagellar basal body-associated protein FliL J4N40_23245 PF02561 Flagellar protein FliS J4N40_23250 PF07195 Flagellar hook-associated protein 2 C-terminus J4N40_23250 PF07196 Flagellin hook IN motif J4N40_23250 PF02465 Flagellar hook-associated protein 2 N-terminus J4N40_23260 PF00700 Bacterial flagellin C-terminal helical region J4N40_23260 PF00669 Bacterial flagellin N-terminal helical region J4N40_23270 PF00771 FHIPEP family J4N40_23275 PF01312 FlhB HrpN YscU SpaS Family J4N40_23280 PF01311 Bacterial export proteins, family 1 J4N40_23285 PF01313 Bacterial export proteins, family 3 J4N40_23290 PF00813 FliP family J4N40_23295 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J4N40_23310 PF00158 Sigma-54 interaction domain J4N40_23310 PF02954 Bacterial regulatory protein, Fis family J4N40_23310 PF00072 Response regulator receiver domain J4N40_23315 PF02049 Flagellar hook-basal body complex protein FliE J4N40_23320 PF01514 Secretory protein of YscJ/FliF family J4N40_23320 PF08345 Flagellar M-ring protein C-terminal J4N40_23325 PF14841 FliG middle domain J4N40_23325 PF01706 FliG C-terminal domain J4N40_23325 PF14842 FliG N-terminal domain J4N40_23335 PF18269 T3SS EscN ATPase C-terminal domain J4N40_23335 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N40_23350 PF03466 LysR substrate binding domain J4N40_23350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_23385 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N40_23390 PF03466 LysR substrate binding domain J4N40_23390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_23410 PF00072 Response regulator receiver domain J4N40_23410 PF00486 Transcriptional regulatory protein, C terminal J4N40_23415 PF00072 Response regulator receiver domain J4N40_23415 PF08448 PAS fold J4N40_23415 PF00512 His Kinase A (phospho-acceptor) domain J4N40_23415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_23415 PF13426 PAS domain J4N40_23420 PF00080 Copper/zinc superoxide dismutase (SODC) J4N40_23435 PF00563 EAL domain J4N40_23435 PF00990 Diguanylate cyclase, GGDEF domain J4N40_23435 PF03707 Bacterial signalling protein N terminal repeat J4N40_23435 PF13188 PAS domain J4N40_23440 PF00155 Aminotransferase class I and II J4N40_23445 PF00107 Zinc-binding dehydrogenase J4N40_23445 PF08240 Alcohol dehydrogenase GroES-like domain J4N40_23475 PF00194 Eukaryotic-type carbonic anhydrase J4N40_23480 PF00924 Mechanosensitive ion channel J4N40_23490 PF01070 FMN-dependent dehydrogenase J4N40_23495 PF02652 L-lactate permease J4N40_23500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_23500 PF03466 LysR substrate binding domain J4N40_23505 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain J4N40_23505 PF00326 Prolyl oligopeptidase family J4N40_23510 PF00005 ABC transporter J4N40_23510 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N40_23520 PF13654 AAA domain J4N40_23520 PF05362 Lon protease (S16) C-terminal proteolytic domain J4N40_23525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N40_23525 PF00672 HAMP domain J4N40_23525 PF12729 Four helix bundle sensory module for signal transduction J4N40_23530 PF13609 Gram-negative porin J4N40_23535 PF07238 PilZ domain J4N40_23535 PF12945 Flagellar protein YcgR J4N40_23550 PF00583 Acetyltransferase (GNAT) family J4N40_23555 PF12800 4Fe-4S binding domain J4N40_23555 PF12838 4Fe-4S dicluster domain J4N40_23560 PF13237 4Fe-4S dicluster domain J4N40_23560 PF12801 4Fe-4S binding domain J4N40_23580 PF12558 ATP-binding cassette cobalt transporter J4N40_23580 PF00005 ABC transporter J4N40_23585 PF07155 ECF-type riboflavin transporter, S component J4N40_23590 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N40_23590 PF00529 HlyD membrane-fusion protein of T1SS J4N40_23595 PF11742 Protein of unknown function (DUF3302) J4N40_23600 PF00990 Diguanylate cyclase, GGDEF domain J4N40_23615 PF01048 Phosphorylase superfamily J4N40_23620 PF08349 Protein of unknown function (DUF1722) J4N40_23625 PF13411 MerR HTH family regulatory protein J4N40_23630 PF00875 DNA photolyase J4N40_23630 PF03441 FAD binding domain of DNA photolyase J4N40_23635 PF17969 L,D-transpeptidase C-terminal domain J4N40_23635 PF01476 LysM domain J4N40_23635 PF03734 L,D-transpeptidase catalytic domain J4N40_23645 PF00270 DEAD/DEAH box helicase J4N40_23645 PF00271 Helicase conserved C-terminal domain J4N40_23650 PF00326 Prolyl oligopeptidase family J4N40_23650 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain J4N40_23655 PF07715 TonB-dependent Receptor Plug Domain J4N40_23655 PF00593 TonB dependent receptor J4N40_23675 PF00672 HAMP domain J4N40_23675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N40_23680 PF12849 PBP superfamily domain J4N40_23685 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_23690 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_23695 PF00005 ABC transporter J4N40_23710 PF07584 Aerotolerance regulator N-terminal J4N40_23710 PF13519 von Willebrand factor type A domain J4N40_23715 PF13519 von Willebrand factor type A domain J4N40_23725 PF01882 Protein of unknown function DUF58 J4N40_23730 PF07726 ATPase family associated with various cellular activities (AAA) J4N40_23730 PF17863 AAA lid domain J4N40_23735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N40_23735 PF00672 HAMP domain J4N40_23735 PF02743 Cache domain J4N40_23745 PF00196 Bacterial regulatory proteins, luxR family J4N40_23750 PF00196 Bacterial regulatory proteins, luxR family J4N40_23760 PF00005 ABC transporter J4N40_23760 PF00664 ABC transporter transmembrane region J4N40_23765 PF00529 HlyD membrane-fusion protein of T1SS J4N40_23775 PF01032 FecCD transport family J4N40_23780 PF01497 Periplasmic binding protein J4N40_23785 PF00005 ABC transporter J4N40_23790 PF00593 TonB dependent receptor J4N40_23790 PF07715 TonB-dependent Receptor Plug Domain J4N40_23795 PF00664 ABC transporter transmembrane region J4N40_23795 PF00005 ABC transporter J4N40_23800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_23800 PF02702 Osmosensitive K+ channel His kinase sensor domain J4N40_23800 PF13493 Domain of unknown function (DUF4118) J4N40_23800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N40_23800 PF00512 His Kinase A (phospho-acceptor) domain J4N40_23800 PF02702 Osmosensitive K+ channel His kinase sensor domain J4N40_23800 PF00512 His Kinase A (phospho-acceptor) domain J4N40_23800 PF13493 Domain of unknown function (DUF4118) J4N40_23805 PF00072 Response regulator receiver domain J4N40_23805 PF00486 Transcriptional regulatory protein, C terminal J4N40_23810 PF02080 TrkA-C domain J4N40_23810 PF02254 TrkA-N domain J4N40_23815 PF02386 Cation transport protein J4N40_23820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_23820 PF03466 LysR substrate binding domain J4N40_23825 PF02028 BCCT, betaine/carnitine/choline family transporter J4N40_23830 PF00848 Ring hydroxylating alpha subunit (catalytic domain) J4N40_23830 PF00355 Rieske [2Fe-2S] domain J4N40_23835 PF00171 Aldehyde dehydrogenase family J4N40_23840 PF18113 Rubredoxin binding C-terminal domain J4N40_23840 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N40_23845 PF01266 FAD dependent oxidoreductase J4N40_23855 PF00127 Copper binding proteins, plastocyanin/azurin family J4N40_23860 PF13419 Haloacid dehalogenase-like hydrolase J4N40_23870 PF00158 Sigma-54 interaction domain J4N40_23870 PF01590 GAF domain J4N40_23875 PF00258 Flavodoxin J4N40_23875 PF00301 Rubredoxin J4N40_23875 PF00753 Metallo-beta-lactamase superfamily J4N40_23880 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N40_23880 PF18113 Rubredoxin binding C-terminal domain J4N40_23890 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J4N40_23890 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J4N40_23895 PF00199 Catalase J4N40_23895 PF06628 Catalase-related immune-responsive J4N40_23900 PF13417 Glutathione S-transferase, N-terminal domain J4N40_23905 PF00107 Zinc-binding dehydrogenase J4N40_23905 PF16884 N-terminal domain of oxidoreductase J4N40_23910 PF16925 Tetracyclin repressor-like, C-terminal domain J4N40_23910 PF00440 Bacterial regulatory proteins, tetR family J4N40_23915 PF04266 ASCH domain J4N40_23945 PF00534 Glycosyl transferases group 1 J4N40_23945 PF13439 Glycosyltransferase Family 4 J4N40_23955 PF13807 G-rich domain on putative tyrosine kinase J4N40_23955 PF02706 Chain length determinant protein J4N40_23955 PF13614 AAA domain J4N40_23970 PF02397 Bacterial sugar transferase J4N40_23975 PF08402 TOBE domain J4N40_23975 PF00005 ABC transporter J4N40_23980 PF01547 Bacterial extracellular solute-binding protein J4N40_23985 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_23985 PF14785 Maltose transport system permease protein MalF P2 domain J4N40_23990 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_24015 PF07690 Major Facilitator Superfamily J4N40_24025 PF00550 Phosphopantetheine attachment site J4N40_24025 PF00857 Isochorismatase family J4N40_24030 PF00501 AMP-binding enzyme J4N40_24030 PF13193 AMP-binding enzyme C-terminal domain J4N40_24035 PF00425 chorismate binding enzyme J4N40_24040 PF00793 DAHP synthetase I family J4N40_24045 PF00664 ABC transporter transmembrane region J4N40_24045 PF00005 ABC transporter J4N40_24050 PF04954 Siderophore-interacting protein J4N40_24050 PF08021 Siderophore-interacting FAD-binding domain J4N40_24050 PF00005 ABC transporter J4N40_24050 PF00664 ABC transporter transmembrane region J4N40_24055 PF00282 Pyridoxal-dependent decarboxylase conserved domain J4N40_24060 PF00501 AMP-binding enzyme J4N40_24060 PF00550 Phosphopantetheine attachment site J4N40_24060 PF00668 Condensation domain J4N40_24065 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) J4N40_24070 PF00975 Thioesterase domain J4N40_24075 PF00501 AMP-binding enzyme J4N40_24075 PF13193 AMP-binding enzyme C-terminal domain J4N40_24075 PF00668 Condensation domain J4N40_24080 PF07715 TonB-dependent Receptor Plug Domain J4N40_24080 PF00593 TonB dependent receptor J4N40_24085 PF01497 Periplasmic binding protein J4N40_24090 PF01032 FecCD transport family J4N40_24095 PF01032 FecCD transport family J4N40_24100 PF13193 AMP-binding enzyme C-terminal domain J4N40_24100 PF00550 Phosphopantetheine attachment site J4N40_24100 PF00668 Condensation domain J4N40_24100 PF00501 AMP-binding enzyme J4N40_24110 PF17837 4'-phosphopantetheinyl transferase N-terminal domain J4N40_24110 PF01648 4'-phosphopantetheinyl transferase superfamily J4N40_24120 PF05661 Protein of unknown function (DUF808) J4N40_24125 PF01979 Amidohydrolase family J4N40_24130 PF01679 Proteolipid membrane potential modulator J4N40_24135 PF03473 MOSC domain J4N40_24135 PF03476 MOSC N-terminal beta barrel domain J4N40_24135 PF03473 MOSC domain J4N40_24135 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N40_24135 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N40_24135 PF03476 MOSC N-terminal beta barrel domain J4N40_24140 PF02540 NAD synthase J4N40_24145 PF01467 Cytidylyltransferase-like J4N40_24185 PF00005 ABC transporter J4N40_24190 PF01032 FecCD transport family J4N40_24200 PF02472 Biopolymer transport protein ExbD/TolR J4N40_24205 PF01618 MotA/TolQ/ExbB proton channel family J4N40_24210 PF03544 Gram-negative bacterial TonB protein C-terminal J4N40_24215 PF04055 Radical SAM superfamily J4N40_24220 PF06228 Haem utilisation ChuX/HutX J4N40_24225 PF01243 Pyridoxamine 5'-phosphate oxidase J4N40_24235 PF00072 Response regulator receiver domain J4N40_24235 PF01584 CheW-like domain J4N40_24245 PF01554 MatE J4N40_24250 PF00005 ABC transporter J4N40_24250 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N40_24255 PF00005 ABC transporter J4N40_24255 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N40_24260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N40_24265 PF00528 Binding-protein-dependent transport system inner membrane component J4N40_24270 PF00455 DeoR C terminal sensor domain J4N40_24270 PF08220 DeoR-like helix-turn-helix domain J4N40_24275 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J4N40_24275 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J4N40_24280 PF07005 Sugar-binding N-terminal domain J4N40_24280 PF17042 Nucleotide-binding C-terminal domain J4N40_24285 PF00596 Class II Aldolase and Adducin N-terminal domain J4N40_24290 PF01261 Xylose isomerase-like TIM barrel J4N40_24295 PF01370 NAD dependent epimerase/dehydratase family J4N40_24300 PF02447 GntP family permease J4N40_24305 PF02583 Metal-sensitive transcriptional repressor J4N40_24310 PF03824 High-affinity nickel-transport protein J4N40_24315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N40_24315 PF02743 Cache domain J4N40_24315 PF00672 HAMP domain J4N40_24320 PF03466 LysR substrate binding domain J4N40_24320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N40_24325 PF01039 Carboxyl transferase domain J4N40_24325 PF17848 Acetyl-coA carboxylase zinc finger domain J4N40_24335 PF01752 Collagenase J4N40_24335 PF08453 Peptidase family M9 N-terminal J4N40_24335 PF04151 Bacterial pre-peptidase C-terminal domain J4N40_24345 PF02627 Carboxymuconolactone decarboxylase family J4N40_24350 PF13411 MerR HTH family regulatory protein J4N40_24355 PF00128 Alpha amylase, catalytic domain J4N40_24370 PF00999 Sodium/hydrogen exchanger family J4N40_24370 PF02254 TrkA-N domain J4N40_24375 PF02525 Flavodoxin-like fold J4N40_24380 PF00582 Universal stress protein family