locus-tag	class	description
J4N40_00010	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
J4N40_00015	COG0445	tRNA wobble uridine modification
J4N40_00020	COG0357	Ribosomal RNA small subunit methyltransferase G
J4N40_00025	COG1192	Involved in chromosome partitioning
J4N40_00030	COG1475	DNA binding
J4N40_00035	COG3312	ion transport
J4N40_00040	COG0356	it plays a direct role in the translocation of protons across the membrane
J4N40_00050	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
J4N40_00055	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
J4N40_00060	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
J4N40_00065	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
J4N40_00070	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
J4N40_00075	COG0355	proton-transporting ATP synthase activity, rotational mechanism
J4N40_00085	COG0765	amino acid transport
J4N40_00090	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J4N40_00095	COG2814	Major facilitator Superfamily
J4N40_00100	COG0583	DNA-binding transcription factor activity
J4N40_00110	COG0129	dihydroxy-acid dehydratase activity
J4N40_00115	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
J4N40_00120	COG3978	acetolactate synthase activity
J4N40_00130	COG0606	chelatase, subunit chli
J4N40_00140	COG0204	Acyl-transferase
J4N40_00145	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
J4N40_00150	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
J4N40_00160	COG3084	Protein conserved in bacteria
J4N40_00170	COG4326	sporulation control protein
J4N40_00175	COG1272	protein, Hemolysin III
J4N40_00185	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
J4N40_00190	COG0569	domain protein
J4N40_00195	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
J4N40_00195	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
J4N40_00200	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
J4N40_00205	COG0242	peptide deformylase activity
J4N40_00215	COG0758	DNA mediated transformation
J4N40_00220	COG2922	Belongs to the Smg family
J4N40_00225	COG0551	DNA topoisomerase type I activity
J4N40_00230	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
J4N40_00235	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
J4N40_00240	COG0009	L-threonylcarbamoyladenylate synthase
J4N40_00260	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
J4N40_00305	COG2132	Multicopper oxidase
J4N40_00325	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
J4N40_00330	COG2104	thiamine diphosphate biosynthetic process
J4N40_00345	COG0006	proline dipeptidase activity
J4N40_00345	COG0006	proline dipeptidase activity
J4N40_00375	COG3220	belongs to the UPF0276 family
J4N40_00385	COG0210	DNA helicase
J4N40_00390	COG0405	Gamma-glutamyltransferase
J4N40_00395	COG1280	lysine exporter protein (LysE YggA)
J4N40_00405	COG2962	Rard protein
J4N40_00410	COG0514	ATP-dependent DNA helicase (RecQ)
J4N40_00420	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
J4N40_00430	COG0248	Ppx GppA phosphatase
J4N40_00435	COG0513	Belongs to the DEAD box helicase family
J4N40_00440	COG3118	belongs to the thioredoxin family
J4N40_00455	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
J4N40_00460	COG0633	Ferredoxin
J4N40_00500	COG3071	HemY protein
J4N40_00505	COG2959	enzyme of heme biosynthesis
J4N40_00510	COG1587	Uroporphyrinogen-III synthase
J4N40_00515	COG0181	hydroxymethylbilane synthase activity
J4N40_00520	COG3072	Adenylate cyclase
J4N40_00525	COG1965	Belongs to the frataxin family
J4N40_00535	COG0019	diaminopimelate decarboxylase activity
J4N40_00540	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
J4N40_00550	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
J4N40_00555	COG1011	Hydrolase
J4N40_00560	COG3287	FIST C domain
J4N40_00560	COG2200	EAL domain
J4N40_00560	COG2199	diguanylate cyclase activity
J4N40_00565	COG3148	PFAM DTW domain containing protein
J4N40_00580	COG0561	phosphatase activity
J4N40_00585	COG2267	carboxylic ester hydrolase activity
J4N40_00590	COG1280	lysine exporter protein (LysE YggA)
J4N40_00595	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
J4N40_00600	COG0640	Transcriptional regulator
J4N40_00605	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
J4N40_00645	COG2095	MarC family integral membrane protein
J4N40_00655	COG0742	ribosomal rna small subunit methyltransferase
J4N40_00660	COG0552	protein localization to endoplasmic reticulum
J4N40_00665	COG2884	Cell division ATP-binding protein ftsE
J4N40_00670	COG2177	Part of the ABC transporter FtsEX involved in
J4N40_00680	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
J4N40_00685	COG0705	Rhomboid family
J4N40_00690	COG1580	Controls the rotational direction of flagella during chemotaxis
J4N40_00695	COG3161	chorismate lyase activity
J4N40_00700	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
J4N40_00705	COG2937	Belongs to the GPAT DAPAT family
J4N40_00710	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
J4N40_00715	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
J4N40_00720	COG0534	Mate efflux family protein
J4N40_00725	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
J4N40_00745	COG5001	Diguanylate cyclase
J4N40_00750	COG4251	negative regulation of phosphorylation
J4N40_00750	COG5001	Diguanylate cyclase
J4N40_00750	COG3706	GGDEF domain
J4N40_00750	COG2203	Gaf domain
J4N40_00795	COG2003	Belongs to the UPF0758 family
J4N40_00855	COG4206	TonB-dependent receptor
J4N40_00920	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
J4N40_00930	COG0812	UDP-N-acetylmuramate dehydrogenase activity
J4N40_00935	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
J4N40_00935	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
J4N40_00965	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
J4N40_00970	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
J4N40_00975	COG0250	Participates in transcription elongation, termination and antitermination
J4N40_00990	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
J4N40_00995	COG0222	ribosome binding
J4N40_01000	COG0085	RNA polymerase activity
J4N40_01005	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
J4N40_01010	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
J4N40_01015	COG2816	NAD+ diphosphatase activity
J4N40_01020	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
J4N40_01025	COG1573	uracil-dna glycosylase
J4N40_01035	COG3068	Protein conserved in bacteria
J4N40_01040	COG1253	flavin adenine dinucleotide binding
J4N40_01055	COG0151	Belongs to the GarS family
J4N40_01060	COG0138	bifunctional purine biosynthesis protein purh
J4N40_01065	COG0789	Transcriptional regulator
J4N40_01070	COG3710	Transcriptional regulator
J4N40_01075	COG0531	amino acid
J4N40_01080	COG1982	Orn Lys Arg decarboxylase major
J4N40_01140	COG0488	(ABC) transporter
J4N40_01150	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
J4N40_01155	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
J4N40_01160	COG2264	protein methyltransferase activity
J4N40_01165	COG0439	Biotin carboxylase
J4N40_01170	COG0511	ligase activity, forming carbon-carbon bonds
J4N40_01175	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
J4N40_01180	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
J4N40_01195	COG2814	Major facilitator Superfamily
J4N40_01220	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
J4N40_01230	COG3263	regulation of cellular component size
J4N40_01240	COG4232	protein-disulfide reductase activity
J4N40_01245	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
J4N40_01250	COG1027	Aspartate ammonia-lyase
J4N40_01255	COG3030	protein affecting phage T7 exclusion by the F plasmid
J4N40_01260	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
J4N40_01270	COG2205	protein histidine kinase activity
J4N40_01275	COG0745	RESPONSE REGULATOR receiver
J4N40_01280	COG3678	ATP-independent chaperone mediated protein folding
J4N40_01285	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
J4N40_01290	COG0205	6-phosphofructokinase activity
J4N40_01295	COG0534	Mate efflux family protein
J4N40_01305	COG0459	protein refolding
J4N40_01315	COG1285	pathogenesis
J4N40_01320	COG1509	lysine 2,3-aminomutase activity
J4N40_01335	COG3080	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
J4N40_01340	COG3029	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
J4N40_01345	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
J4N40_01350	COG1053	succinate dehydrogenase
J4N40_01355	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
J4N40_01375	COG4942	peptidase
J4N40_01380	COG1045	serine acetyltransferase
J4N40_01385	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
J4N40_01390	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
J4N40_01395	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
J4N40_01400	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
J4N40_01410	COG3273	potassium ion transport
J4N40_01410	COG0471	metal ion transport
J4N40_01415	COG0688	phosphatidylethanolamine metabolic process
J4N40_01420	COG1162	GTPase activity
J4N40_01425	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
J4N40_01490	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
J4N40_01495	COG0802	atpase or kinase
J4N40_01505	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
J4N40_01510	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
J4N40_01520	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
J4N40_01525	COG0330	HflC and HflK could
J4N40_01530	COG0330	HflC and HflK could
J4N40_01535	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
J4N40_01540	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
J4N40_01545	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
J4N40_01550	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
J4N40_01550	COG1017	nitric oxide dioxygenase activity
J4N40_01555	COG1959	2 iron, 2 sulfur cluster binding
J4N40_01560	COG0557	exoribonuclease II activity
J4N40_01565	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
J4N40_01570	COG0546	phosphoglycolate phosphatase activity
J4N40_01575	COG0180	Tryptophanyl-tRNA synthetase
J4N40_01590	COG0512	Glutamine amidotransferase of anthranilate synthase
J4N40_01595	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
J4N40_01615	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
J4N40_01620	COG3954	Phosphoribulokinase
J4N40_01630	COG0429	hydrolase of the alpha beta-hydrolase fold
J4N40_01640	COG0488	(ABC) transporter
J4N40_01645	COG2249	NAD(P)H dehydrogenase (quinone) activity
J4N40_01660	COG1047	Peptidyl-prolyl cis-trans
J4N40_01665	COG1446	asparaginase
J4N40_01680	COG0545	Peptidyl-prolyl cis-trans isomerase
J4N40_01685	COG2964	Protein conserved in bacteria
J4N40_01690	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
J4N40_01695	COG2923	Belongs to the DsrF TusC family
J4N40_01715	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
J4N40_01720	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
J4N40_01735	COG0281	malic enzyme
J4N40_01740	COG3060	This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis
J4N40_01745	COG0626	cystathionine gamma-synthase activity
J4N40_01750	COG0460	homoserine dehydrogenase
J4N40_01750	COG0527	aspartate kinase activity
J4N40_01755	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
J4N40_01765	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
J4N40_01775	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
J4N40_01785	COG0137	argininosuccinate synthase activity
J4N40_01790	COG0165	Argininosuccinate lyase
J4N40_01790	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
J4N40_01800	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
J4N40_01805	COG0678	peroxiredoxin activity
J4N40_01805	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
J4N40_01815	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
J4N40_01845	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
J4N40_01850	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
J4N40_01860	COG0338	D12 class N6 adenine-specific DNA methyltransferase
J4N40_01865	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
J4N40_01870	COG0360	Binds together with S18 to 16S ribosomal RNA
J4N40_01875	COG2965	DNA replication, synthesis of RNA primer
J4N40_01900	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
J4N40_01905	COG0432	Pfam Uncharacterised protein family UPF0047
J4N40_01910	COG0166	Belongs to the GPI family
J4N40_01920	COG0735	belongs to the Fur family
J4N40_01980	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
J4N40_02005	COG0582	viral genome integration into host DNA
J4N40_02010	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
J4N40_02030	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
J4N40_02035	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
J4N40_02040	COG0175	sulfate reduction
J4N40_02100	COG0646	methionine synthase
J4N40_02100	COG1410	methionine synthase
J4N40_02105	COG0527	aspartate kinase activity
J4N40_02110	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
J4N40_02120	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
J4N40_02135	COG0629	single-stranded DNA binding
J4N40_02140	COG2199	diguanylate cyclase activity
J4N40_02140	COG2200	EAL domain
J4N40_02160	COG1450	Type ii and iii secretion system protein
J4N40_02165	COG3409	Peptidoglycan-binding domain 1 protein
J4N40_02165	COG3267	Type II secretory pathway component ExeA
J4N40_02175	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
J4N40_02180	COG1459	type II secretion system
J4N40_02225	COG1077	Cell shape determining protein MreB Mrl
J4N40_02230	COG1792	Involved in formation and maintenance of cell shape
J4N40_02235	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
J4N40_02240	COG0424	maF-like protein
J4N40_02250	COG3164	Protein of unknown function
J4N40_02255	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
J4N40_02260	COG0312	modulator of DNA gyrase
J4N40_02265	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
J4N40_02270	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
J4N40_02280	COG0564	pseudouridine synthase activity
J4N40_02285	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
J4N40_02290	COG3028	Belongs to the UPF0307 family
J4N40_02295	COG0312	modulator of DNA gyrase
J4N40_02300	COG2239	Acts as a magnesium transporter
J4N40_02305	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
J4N40_02310	COG1660	Displays ATPase and GTPase activities
J4N40_02315	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
J4N40_02320	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
J4N40_02330	COG1137	ATPase activity
J4N40_02335	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
J4N40_02345	COG0517	IMP dehydrogenase activity
J4N40_02345	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
J4N40_02355	COG1127	ABC transporter
J4N40_02360	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
J4N40_02365	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
J4N40_02370	COG2854	intermembrane phospholipid transfer
J4N40_02380	COG5007	Belongs to the BolA IbaG family
J4N40_02385	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
J4N40_02390	COG0204	Acyl-transferase
J4N40_02395	COG0251	oxidation-reduction process
J4N40_02400	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
J4N40_02405	COG0540	Belongs to the ATCase OTCase family
J4N40_02435	COG0456	acetyltransferase
J4N40_02445	COG0525	valine-tRNA ligase activity
J4N40_02450	COG2927	DNA polymerase III (CHI subunit)
J4N40_02455	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
J4N40_02460	COG0795	lipopolysaccharide-transporting ATPase activity
J4N40_02465	COG0795	lipopolysaccharide-transporting ATPase activity
J4N40_02480	COG1028	Short-chain dehydrogenase reductase Sdr
J4N40_02490	COG0726	polysaccharide deacetylase
J4N40_02495	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
J4N40_02500	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
J4N40_02505	COG1447	Phosphotransferase system cellobiose-specific component IIA
J4N40_02510	COG1486	melibiose metabolic process
J4N40_02515	COG3394	polysaccharide catabolic process
J4N40_02520	COG1609	Transcriptional regulator
J4N40_02525	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
J4N40_02645	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
J4N40_02655	COG0220	tRNA (guanine-N7-)-methyltransferase activity
J4N40_02665	COG2066	Belongs to the glutaminase family
J4N40_02670	COG0635	Involved in the biosynthesis of porphyrin-containing compound
J4N40_02675	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
J4N40_02685	COG1872	DUF167
J4N40_02690	COG0762	integral membrane protein
J4N40_02695	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
J4N40_02700	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
J4N40_02715	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
J4N40_02720	COG1678	Uncharacterized ACR, COG1678
J4N40_02725	COG0189	ligase activity
J4N40_02730	COG1385	rRNA (uridine-N3-)-methyltransferase activity
J4N40_02735	COG2356	endonuclease I
J4N40_02750	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
J4N40_02755	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
J4N40_02760	COG0583	DNA-binding transcription factor activity
J4N40_02765	COG4771	TonB-dependent receptor
J4N40_02780	COG0191	fructose-bisphosphate aldolase activity
J4N40_02785	COG0668	transmembrane transport
J4N40_02800	COG0583	DNA-binding transcription factor activity
J4N40_02810	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
J4N40_02815	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
J4N40_02820	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
J4N40_02830	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
J4N40_02835	COG3079	Belongs to the UPF0149 family
J4N40_02840	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
J4N40_02845	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
J4N40_02860	COG0354	folic acid binding
J4N40_02865	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
J4N40_02870	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
J4N40_02875	COG1595	DNA-templated transcription, initiation
J4N40_02890	COG3086	response to oxidative stress
J4N40_02895	COG0481	GTPase activity
J4N40_02900	COG0681	Belongs to the peptidase S26 family
J4N40_02910	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
J4N40_02915	COG1381	Involved in DNA repair and RecF pathway recombination
J4N40_02920	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
J4N40_02925	COG0736	holo-[acyl-carrier-protein] synthase activity
J4N40_02935	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
J4N40_02940	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
J4N40_02945	COG3956	TIGRFAM MazG family protein
J4N40_02950	COG0504	CTP synthase activity
J4N40_02955	COG0148	phosphopyruvate hydratase activity
J4N40_02960	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
J4N40_02965	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
J4N40_02970	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
J4N40_02980	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
J4N40_02985	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
J4N40_02995	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
J4N40_03000	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
J4N40_03005	COG1546	Belongs to the CinA family
J4N40_03010	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
J4N40_03015	COG2137	regulation of response to DNA damage stimulus
J4N40_03020	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
J4N40_03025	COG0527	aspartate kinase activity
J4N40_03085	COG3630	sodium ion export across plasma membrane
J4N40_03090	COG5016	pyruvate
J4N40_03090	COG0511	ligase activity, forming carbon-carbon bonds
J4N40_03095	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
J4N40_03105	COG1238	metal cluster binding
J4N40_03110	COG0612	Peptidase, M16
J4N40_03125	COG1854	S-ribosylhomocysteine lyase activity
J4N40_03130	COG4536	flavin adenine dinucleotide binding
J4N40_03135	COG4137	Cytochrome C assembly protein
J4N40_03140	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
J4N40_03145	COG0228	four-way junction DNA binding
J4N40_03150	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
J4N40_03165	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
J4N40_03170	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
J4N40_03175	COG0237	dephospho-CoA kinase activity
J4N40_03185	COG1459	type II secretion system
J4N40_03190	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
J4N40_03200	COG0157	Belongs to the NadC ModD family
J4N40_03210	COG2186	Transcriptional regulator
J4N40_03215	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
J4N40_03220	COG0508	dehydrogenase complex catalyzes the overall conversion of
J4N40_03225	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
J4N40_03240	COG0288	reversible hydration of carbon dioxide
J4N40_03245	COG0659	secondary active sulfate transmembrane transporter activity
J4N40_03250	COG1131	(ABC) transporter
J4N40_03255	COG0842	Transport permease protein
J4N40_03260	COG1560	Kdo2-lipid A biosynthetic process
J4N40_03265	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
J4N40_03270	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
J4N40_03275	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
J4N40_03285	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
J4N40_03295	COG1489	DNA binding
J4N40_03300	COG1643	Atp-dependent helicase
J4N40_03305	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
J4N40_03310	COG1752	Esterase of the alpha-beta hydrolase superfamily
J4N40_03315	COG1049	propionate catabolic process, 2-methylcitrate cycle
J4N40_03320	COG3112	Uncharacterised protein family (UPF0231)
J4N40_03330	COG0004	ammonium transporteR
J4N40_03335	COG1840	ABC-type Fe3 transport system, periplasmic component
J4N40_03345	COG3842	ATPase activity
J4N40_03350	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
J4N40_03365	COG2971	BadF BadG BcrA BcrD
J4N40_03375	COG4608	Belongs to the ABC transporter superfamily
J4N40_03380	COG0444	Belongs to the ABC transporter superfamily
J4N40_03385	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J4N40_03395	COG0747	negative chemotaxis
J4N40_03400	COG0784	Response regulator, receiver
J4N40_03400	COG2205	protein histidine kinase activity
J4N40_03410	COG0628	permease
J4N40_03435	COG0739	heme binding
J4N40_03440	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
J4N40_03450	COG2027	D-alanyl-D-alanine carboxypeptidase
J4N40_03455	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
J4N40_03460	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
J4N40_03465	COG1534	Rna-binding protein
J4N40_03470	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
J4N40_03475	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
J4N40_03480	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
J4N40_03485	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
J4N40_03490	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
J4N40_03505	COG0779	Required for maturation of 30S ribosomal subunits
J4N40_03510	COG0195	Participates in both transcription termination and antitermination
J4N40_03515	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
J4N40_03520	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
J4N40_03525	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
J4N40_03530	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
J4N40_03535	COG1185	polyribonucleotide nucleotidyltransferase activity
J4N40_03550	COG0534	Mate efflux family protein
J4N40_03555	COG0826	peptidase U32
J4N40_03560	COG0826	peptidase U32
J4N40_03570	COG3154	lipid carrier protein
J4N40_03575	COG3153	acetyltransferase
J4N40_03605	COG0084	hydrolase, TatD family'
J4N40_03610	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
J4N40_03615	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
J4N40_03620	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
J4N40_03625	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
J4N40_03630	COG0813	purine-nucleoside phosphorylase activity
J4N40_03640	COG0560	Phosphoserine phosphatase
J4N40_03650	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
J4N40_03655	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
J4N40_03660	COG0583	DNA-binding transcription factor activity
J4N40_03670	COG1022	Amp-dependent synthetase and ligase
J4N40_03710	COG0583	DNA-binding transcription factor activity
J4N40_03715	COG1609	Transcriptional regulator
J4N40_03735	COG0598	Magnesium transport protein CorA
J4N40_03740	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
J4N40_03745	COG1349	DNA-binding transcription factor activity
J4N40_03750	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
J4N40_03755	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
J4N40_03760	COG2271	Major facilitator Superfamily
J4N40_03765	COG0584	glycerophosphoryl diester phosphodiesterase
J4N40_03770	COG2171	N-acyltransferase activity
J4N40_03785	COG3141	response to X-ray
J4N40_03805	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
J4N40_03810	COG1074	ATP-dependent DNA helicase activity
J4N40_03815	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
J4N40_03835	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
J4N40_03835	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
J4N40_03845	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
J4N40_03850	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
J4N40_03855	COG2166	iron-sulfur cluster assembly
J4N40_03860	COG3706	GGDEF domain
J4N40_03865	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
J4N40_03870	COG0693	protein deglycase activity
J4N40_03875	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
J4N40_03895	COG1595	DNA-templated transcription, initiation
J4N40_03915	COG3056	Lipoprotein
J4N40_03920	COG2813	Specifically methylates the guanine in position
J4N40_03925	COG0271	Belongs to the BolA IbaG family
J4N40_03930	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
J4N40_03935	COG1805	sodium ion transport
J4N40_03940	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
J4N40_03945	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
J4N40_03950	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
J4N40_03955	COG2871	sodium ion transport
J4N40_03960	COG1477	protein flavinylation
J4N40_03980	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
J4N40_03985	COG0514	ATP-dependent DNA helicase (RecQ)
J4N40_04005	COG0733	neurotransmitter:sodium symporter activity
J4N40_04025	COG0442	prolyl-tRNA aminoacylation
J4N40_04030	COG1720	tRNA m6t6A37 methyltransferase activity
J4N40_04035	COG0254	rRNA binding
J4N40_04045	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
J4N40_04070	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
J4N40_04075	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
J4N40_04105	COG3098	single-species biofilm formation
J4N40_04110	COG0564	pseudouridine synthase activity
J4N40_04120	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
J4N40_04125	COG0024	Methionine aminopeptidase
J4N40_04130	COG0052	Belongs to the universal ribosomal protein uS2 family
J4N40_04135	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
J4N40_04140	COG0528	UMP kinase activity
J4N40_04145	COG0233	cytoplasmic translational termination
J4N40_04150	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
J4N40_04155	COG0575	Belongs to the CDS family
J4N40_04160	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
J4N40_04165	COG0750	zinc metalloprotease
J4N40_04175	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
J4N40_04180	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
J4N40_04190	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
J4N40_04195	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
J4N40_04205	COG0587	DNA-directed DNA polymerase activity
J4N40_04210	COG0825	malonyl-CoA metabolic process
J4N40_04225	COG0347	Belongs to the P(II) protein family
J4N40_04230	COG3021	interspecies interaction between organisms
J4N40_04240	COG0741	lytic transglycosylase activity
J4N40_04240	COG1388	LysM domain
J4N40_04245	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
J4N40_04250	COG2226	methyltransferase
J4N40_04255	COG0328	RNA-DNA hybrid ribonuclease activity
J4N40_04290	COG1960	acyl-CoA dehydrogenase activity
J4N40_04295	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
J4N40_04300	COG0121	glutamine amidotransferase
J4N40_04305	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
J4N40_04310	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
J4N40_04315	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
J4N40_04320	COG2233	PERMEase
J4N40_04340	COG1393	Belongs to the ArsC family
J4N40_04345	COG4783	chaperone-mediated protein folding
J4N40_04360	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
J4N40_04370	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
J4N40_04375	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
J4N40_04390	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
J4N40_04395	COG1393	Belongs to the ArsC family
J4N40_04420	COG2837	iron assimilation
J4N40_04425	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
J4N40_04430	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
J4N40_04435	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
J4N40_04440	COG1334	flagellar protein FlaG
J4N40_04445	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
J4N40_04455	COG1516	flagellar protein fliS
J4N40_04475	COG1677	Flagellar hook-basal body complex protein FliE
J4N40_04485	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
J4N40_04540	COG1987	bacterial-type flagellum assembly
J4N40_04545	COG1684	flagellar biosynthetic protein fliR
J4N40_04580	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
J4N40_04585	COG2198	Histidine kinase
J4N40_04585	COG0784	Response regulator, receiver
J4N40_04585	COG0643	Histidine kinase
J4N40_04590	COG2201	protein-glutamate methylesterase activity
J4N40_04595	COG1192	Involved in chromosome partitioning
J4N40_04605	COG0835	chemotaxis
J4N40_04615	COG4133	protoheme IX ABC transporter activity
J4N40_04620	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
J4N40_04625	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
J4N40_04630	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
J4N40_04635	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
J4N40_04640	COG1138	Cytochrome C-type biogenesis protein
J4N40_04645	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
J4N40_04655	COG3088	subunit of a heme lyase
J4N40_04655	COG4235	cytochrome complex assembly
J4N40_04665	COG2067	long-chain fatty acid transport protein
J4N40_04685	COG0183	Belongs to the thiolase family
J4N40_04690	COG1024	Enoyl-CoA hydratase
J4N40_04690	COG1250	3-hydroxyacyl-CoA dehydrogenase
J4N40_04705	COG2062	phosphohistidine phosphatase, SixA
J4N40_04710	COG2840	Smr protein MutS2
J4N40_04715	COG2890	protein-(glutamine-N5) methyltransferase activity
J4N40_04725	COG2860	membrane
J4N40_04730	COG3101	peptidyl-lysine hydroxylation
J4N40_04740	COG0431	NADPH-dependent FMN reductase
J4N40_04745	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
J4N40_04745	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
J4N40_04750	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
J4N40_04755	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
J4N40_04760	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
J4N40_04770	COG0101	tRNA pseudouridine synthase activity
J4N40_04775	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
J4N40_04780	COG0285	dihydrofolate synthase activity
J4N40_04785	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
J4N40_04790	COG1286	toxin biosynthetic process
J4N40_04795	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
J4N40_04800	COG0583	DNA-binding transcription factor activity
J4N40_04805	COG0745	RESPONSE REGULATOR receiver
J4N40_04810	COG2832	Protein of unknown function (DUF454)
J4N40_04815	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
J4N40_04830	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
J4N40_04835	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
J4N40_04840	COG0814	amino acid
J4N40_04845	COG0251	oxidation-reduction process
J4N40_04850	COG3681	Belongs to the UPF0597 family
J4N40_04865	COG2261	transglycosylase associated protein
J4N40_04870	COG2983	Belongs to the UPF0260 family
J4N40_04875	COG0668	transmembrane transport
J4N40_04880	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
J4N40_04885	COG0346	lactoylglutathione lyase activity
J4N40_04895	COG1785	Belongs to the alkaline phosphatase family
J4N40_04910	COG2226	methyltransferase
J4N40_04925	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
J4N40_04930	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
J4N40_04940	COG3139	Protein of unknown function (DUF1315)
J4N40_04945	COG0252	asparaginase activity
J4N40_04950	COG0616	signal peptide processing
J4N40_04955	COG1902	pentaerythritol trinitrate reductase activity
J4N40_04955	COG0446	pyridine nucleotide-disulphide oxidoreductase
J4N40_04965	COG0778	Nitroreductase
J4N40_04970	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
J4N40_04985	COG0123	including yeast histone deacetylase and acetoin utilization protein
J4N40_05000	COG3082	Protein of unknown function (DUF1414)
J4N40_05005	COG3081	Nucleoid-associated protein
J4N40_05020	COG1757	Na H antiporter
J4N40_05025	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
J4N40_05030	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
J4N40_05035	COG2095	MarC family integral membrane protein
J4N40_05040	COG1454	alcohol dehydrogenase
J4N40_05040	COG1012	belongs to the aldehyde dehydrogenase family
J4N40_05060	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
J4N40_05080	COG2056	Na+-H+ antiporter family
J4N40_05085	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
J4N40_05090	COG2885	chlorophyll binding
J4N40_05100	COG0346	lactoylglutathione lyase activity
J4N40_05105	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
J4N40_05110	COG4660	Part of a membrane complex involved in electron transport
J4N40_05115	COG4659	FMN binding
J4N40_05120	COG4658	electron transport chain
J4N40_05125	COG4656	Part of a membrane complex involved in electron transport
J4N40_05130	COG2878	Part of a membrane complex involved in electron transport
J4N40_05135	COG4657	Part of a membrane complex involved in electron transport
J4N40_05140	COG1882	Formate acetyltransferase
J4N40_05150	COG0556	nucleotide-excision repair
J4N40_05155	COG2204	response regulator
J4N40_05160	COG2198	Histidine kinase
J4N40_05165	COG0391	Required for morphogenesis under gluconeogenic growth conditions
J4N40_05170	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
J4N40_05175	COG0521	Mo-molybdopterin cofactor biosynthetic process
J4N40_05180	COG0315	cyclic pyranopterin monophosphate synthase activity
J4N40_05185	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
J4N40_05190	COG0314	molybdopterin synthase activity
J4N40_05200	COG0601	transmembrane transport
J4N40_05205	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J4N40_05210	COG0444	Belongs to the ABC transporter superfamily
J4N40_05220	COG0435	Glutathione S-transferase
J4N40_05230	COG0280	phosphate acetyltransferase
J4N40_05230	COG0857	belongs to the CobB CobQ family
J4N40_05235	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
J4N40_05240	COG3092	negative regulation of chromosome organization
J4N40_05250	COG4120	Belongs to the binding-protein-dependent transport system permease family
J4N40_05255	COG1122	ATPase activity
J4N40_05260	COG0366	Alpha amylase catalytic
J4N40_05265	COG3706	GGDEF domain
J4N40_05270	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
J4N40_05275	COG3012	SEC-C Motif Domain Protein
J4N40_05275	COG3318	Belongs to the UPF0149 family
J4N40_05280	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
J4N40_05285	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
J4N40_05290	COG2186	Transcriptional regulator
J4N40_05315	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J4N40_05315	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J4N40_05325	COG0572	uridine kinase
J4N40_05335	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
J4N40_05340	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
J4N40_05345	COG0659	secondary active sulfate transmembrane transporter activity
J4N40_05350	COG1530	ribonuclease E activity
J4N40_05355	COG0564	pseudouridine synthase activity
J4N40_05360	COG0424	maF-like protein
J4N40_05365	COG1399	metal-binding, possibly nucleic acid-binding protein
J4N40_05375	COG0416	fatty acid biosynthetic process
J4N40_05380	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
J4N40_05410	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
J4N40_05415	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
J4N40_05420	COG0470	DNA polymerase III
J4N40_05425	COG0084	hydrolase, TatD family'
J4N40_05430	COG1263	PTS System
J4N40_05430	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J4N40_05445	COG0733	neurotransmitter:sodium symporter activity
J4N40_05460	COG4667	esterase of the alpha-beta hydrolase superfamily
J4N40_05470	COG1940	carbohydrate kinase activity
J4N40_05475	COG0784	Response regulator, receiver
J4N40_05475	COG0835	chemotaxis
J4N40_05480	COG0587	DNA-directed DNA polymerase activity
J4N40_05495	COG1028	Short-chain dehydrogenase reductase Sdr
J4N40_05500	COG0616	signal peptide processing
J4N40_05505	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
J4N40_05510	COG0539	negative regulation of cytoplasmic translation
J4N40_05520	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
J4N40_05525	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
J4N40_05535	COG4166	transmembrane transport
J4N40_05555	COG3008	intermembrane lipid transfer
J4N40_05555	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
J4N40_05560	COG2995	paraquat-inducible protein a
J4N40_05565	COG3258	Cytochrome c
J4N40_05570	COG2863	cytochrome
J4N40_05605	COG4232	protein-disulfide reductase activity
J4N40_05610	COG3118	belongs to the thioredoxin family
J4N40_05630	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J4N40_05640	COG0577	efflux transmembrane transporter activity
J4N40_05640	COG1136	(ABC) transporter
J4N40_05650	COG1136	(ABC) transporter
J4N40_05650	COG0577	efflux transmembrane transporter activity
J4N40_05700	COG5002	protein histidine kinase activity
J4N40_05700	COG3850	Histidine kinase
J4N40_05705	COG0745	RESPONSE REGULATOR receiver
J4N40_05710	COG0463	Glycosyl transferase, family 2
J4N40_05715	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
J4N40_05735	COG1032	radical SAM domain protein
J4N40_05755	COG0583	DNA-binding transcription factor activity
J4N40_05760	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
J4N40_05770	COG2350	Protein conserved in bacteria
J4N40_05780	COG2917	probably involved in intracellular septation
J4N40_05800	COG1301	dicarboxylic acid transport
J4N40_05805	COG0318	PFAM AMP-dependent synthetase and ligase
J4N40_05810	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
J4N40_05815	COG0159	tryptophan synthase activity
J4N40_05825	COG0134	indole-3-glycerol-phosphate synthase activity
J4N40_05825	COG0135	phosphoribosylanthranilate isomerase activity
J4N40_05835	COG0512	Glutamine amidotransferase of anthranilate synthase
J4N40_05840	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
J4N40_05850	COG0613	PHP domain protein
J4N40_05855	COG0009	L-threonylcarbamoyladenylate synthase
J4N40_05865	COG1187	pseudouridine synthase activity
J4N40_05885	COG0417	DNA replication proofreading
J4N40_05890	COG2197	response regulator
J4N40_05895	COG0322	excinuclease ABC activity
J4N40_05935	COG0019	diaminopimelate decarboxylase activity
J4N40_05965	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
J4N40_05970	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
J4N40_05990	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
J4N40_06000	COG0437	4 iron, 4 sulfur cluster binding
J4N40_06005	COG3301	Polysulphide reductase, NrfD
J4N40_06010	COG1138	Cytochrome C-type biogenesis protein
J4N40_06015	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
J4N40_06020	COG3088	subunit of a heme lyase
J4N40_06020	COG4235	cytochrome complex assembly
J4N40_06030	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
J4N40_06055	COG2989	Protein conserved in bacteria
J4N40_06060	COG3108	Peptidase M15
J4N40_06065	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
J4N40_06080	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
J4N40_06110	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
J4N40_06115	COG0840	transmembrane signaling receptor activity
J4N40_06135	COG1448	Aminotransferase
J4N40_06150	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
J4N40_06160	COG0017	Asparaginyl-tRNA synthetase
J4N40_06165	COG0840	transmembrane signaling receptor activity
J4N40_06170	COG0720	synthase
J4N40_06180	COG2200	EAL domain
J4N40_06185	COG1760	l-serine dehydratase
J4N40_06190	COG0814	amino acid
J4N40_06195	COG0494	nUDIX hydrolase
J4N40_06205	COG2205	protein histidine kinase activity
J4N40_06205	COG0784	Response regulator, receiver
J4N40_06210	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
J4N40_06225	COG3106	COG3106 Predicted ATPase
J4N40_06230	COG3768	UPF0283 membrane protein
J4N40_06240	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
J4N40_06370	COG0456	acetyltransferase
J4N40_06615	COG2732	(Barnase) inhibitor
J4N40_06870	COG0456	acetyltransferase
J4N40_06880	COG2314	TM2 domain
J4N40_07010	COG1280	lysine exporter protein (LysE YggA)
J4N40_07035	COG0456	acetyltransferase
J4N40_07035	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
J4N40_07395	COG2801	Transposase and inactivated derivatives
J4N40_07465	COG2824	Alkylphosphonate utilization operon protein PhnA
J4N40_07565	COG0110	maltose O-acetyltransferase activity
J4N40_07570	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
J4N40_07575	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
J4N40_07595	COG5507	3-demethylubiquinone-9 3-methyltransferase
J4N40_07600	COG1280	lysine exporter protein (LysE YggA)
J4N40_07605	COG1280	lysine exporter protein (LysE YggA)
J4N40_07615	COG0729	surface antigen
J4N40_07620	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
J4N40_07625	COG2272	Belongs to the type-B carboxylesterase lipase family
J4N40_07660	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
J4N40_07690	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J4N40_07705	COG3290	protein histidine kinase activity
J4N40_07710	COG4565	transcriptional regulatory protein
J4N40_07720	COG2207	Transcriptional regulator
J4N40_07725	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
J4N40_07730	COG0363	glucosamine-6-phosphate deaminase activity
J4N40_07735	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
J4N40_07755	COG3284	Transcriptional regulator
J4N40_07760	COG1012	belongs to the aldehyde dehydrogenase family
J4N40_07830	COG4669	(LipO)protein
J4N40_07850	COG3177	Filamentation induced by cAMP protein fic
J4N40_07880	COG2207	Transcriptional regulator
J4N40_07885	COG4792	protein secretion
J4N40_07890	COG4791	protein targeting
J4N40_07895	COG4794	Type iii secretion
J4N40_07900	COG4790	Type iii secretion
J4N40_07970	COG0457	Tetratricopeptide repeat
J4N40_07990	COG2358	TRAP transporter, solute receptor (TAXI family
J4N40_07995	COG0730	response to heat
J4N40_08030	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
J4N40_08035	COG0372	Belongs to the citrate synthase family
J4N40_08045	COG2828	Protein conserved in bacteria
J4N40_08070	COG0561	phosphatase activity
J4N40_08075	COG0602	queuosine metabolic process
J4N40_08080	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
J4N40_08095	COG0583	DNA-binding transcription factor activity
J4N40_08100	COG0583	DNA-binding transcription factor activity
J4N40_08115	COG0583	DNA-binding transcription factor activity
J4N40_08130	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J4N40_08135	COG0765	amino acid transport
J4N40_08140	COG1126	abc transporter atp-binding protein
J4N40_08145	COG1410	methionine synthase
J4N40_08145	COG0646	methionine synthase
J4N40_08160	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J4N40_08165	COG1335	isochorismatase
J4N40_08185	COG2814	Major facilitator Superfamily
J4N40_08190	COG0583	DNA-binding transcription factor activity
J4N40_08200	COG0583	DNA-binding transcription factor activity
J4N40_08205	COG0656	L-ascorbic acid biosynthetic process
J4N40_08215	COG1414	Transcriptional regulator
J4N40_08220	COG2203	Gaf domain
J4N40_08220	COG2199	diguanylate cyclase activity
J4N40_08245	COG2885	chlorophyll binding
J4N40_08265	COG0840	transmembrane signaling receptor activity
J4N40_08270	COG1254	Belongs to the acylphosphatase family
J4N40_08275	COG2920	part of a sulfur-relay system
J4N40_08285	COG0670	Belongs to the BI1 family
J4N40_08290	COG1126	abc transporter atp-binding protein
J4N40_08295	COG0765	amino acid transport
J4N40_08300	COG4597	amino acid ABC transporter
J4N40_08305	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J4N40_08315	COG1666	GTP binding
J4N40_08320	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
J4N40_08345	COG3008	intermembrane lipid transfer
J4N40_08350	COG2995	paraquat-inducible protein a
J4N40_08355	COG1132	(ABC) transporter
J4N40_08360	COG1956	GAF domain-containing protein
J4N40_08365	COG3109	RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities
J4N40_08380	COG0308	aminopeptidase N
J4N40_08390	COG2902	Dehydrogenase
J4N40_08395	COG0167	dihydroorotate dehydrogenase activity
J4N40_08405	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
J4N40_08405	COG0116	Belongs to the methyltransferase superfamily
J4N40_08415	COG0488	(ABC) transporter
J4N40_08430	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
J4N40_08435	COG1067	ATP-dependent peptidase activity
J4N40_08440	COG3120	sequence-specific DNA binding
J4N40_08465	COG0784	Response regulator, receiver
J4N40_08465	COG2205	protein histidine kinase activity
J4N40_08480	COG3278	Belongs to the heme-copper respiratory oxidase family
J4N40_08495	COG2010	Cytochrome c
J4N40_08505	COG2217	Heavy metal translocating P-type atpase
J4N40_08520	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
J4N40_08525	COG0589	response to stress
J4N40_08550	COG3842	ATPase activity
J4N40_08560	COG1177	transmembrane transport
J4N40_08570	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
J4N40_08575	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
J4N40_08585	COG0004	ammonium transporteR
J4N40_08615	COG4282	regulation of fungal-type cell wall biogenesis
J4N40_08690	COG0437	4 iron, 4 sulfur cluster binding
J4N40_08695	COG0243	molybdopterin cofactor binding
J4N40_08695	COG3383	formate dehydrogenase (NAD+) activity
J4N40_08725	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
J4N40_08730	COG0488	(ABC) transporter
J4N40_08735	COG4191	Histidine kinase
J4N40_08740	COG2204	response regulator
J4N40_08755	COG3842	ATPase activity
J4N40_08760	COG0746	molybdenum cofactor guanylyltransferase activity
J4N40_08765	COG0303	'Molybdopterin
J4N40_08775	COG1940	carbohydrate kinase activity
J4N40_08780	COG3148	PFAM DTW domain containing protein
J4N40_08810	COG0840	transmembrane signaling receptor activity
J4N40_08815	COG0791	NLP P60 protein
J4N40_08825	COG3706	GGDEF domain
J4N40_08835	COG3001	Fructosamine kinase
J4N40_08845	COG0307	riboflavin synthase, alpha
J4N40_08850	COG0534	Mate efflux family protein
J4N40_08860	COG1793	dna ligase
J4N40_08890	COG2204	response regulator
J4N40_08895	COG0297	glycogen (starch) synthase activity
J4N40_08900	COG0438	transferase activity, transferring glycosyl groups
J4N40_08930	COG0438	transferase activity, transferring glycosyl groups
J4N40_08935	COG1215	transferase activity, transferring glycosyl groups
J4N40_08940	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
J4N40_08950	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
J4N40_08965	COG1643	Atp-dependent helicase
J4N40_08970	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
J4N40_09015	COG0443	Heat shock 70 kDa protein
J4N40_09020	COG0443	Heat shock 70 kDa protein
J4N40_09045	COG0583	DNA-binding transcription factor activity
J4N40_09060	COG1132	(ABC) transporter
J4N40_09065	COG1132	(ABC) transporter
J4N40_09075	COG4774	siderophore transport
J4N40_09085	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
J4N40_09090	COG1120	ATPase activity
J4N40_09105	COG0814	amino acid
J4N40_09115	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
J4N40_09125	COG0861	Integral membrane protein TerC family
J4N40_09135	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
J4N40_09140	COG1328	CTP reductase activity
J4N40_09155	COG3300	MHYT domain
J4N40_09155	COG5001	Diguanylate cyclase
J4N40_09170	COG0471	metal ion transport
J4N40_09195	COG4702	Belongs to the UPF0303 family
J4N40_09200	COG0673	inositol 2-dehydrogenase activity
J4N40_09205	COG1349	DNA-binding transcription factor activity
J4N40_09220	COG1538	Outer membrane efflux protein
J4N40_09245	COG3119	arylsulfatase activity
J4N40_09260	COG0641	radical SAM
J4N40_09275	COG3119	arylsulfatase activity
J4N40_09280	COG0527	aspartate kinase activity
J4N40_09285	COG0662	Cupin 2, conserved barrel domain protein
J4N40_09290	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
J4N40_09295	COG0456	acetyltransferase
J4N40_09300	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
J4N40_09320	COG4176	ABC-type proline glycine betaine transport system permease component
J4N40_09325	COG2113	Glycine betaine
J4N40_09330	COG1368	sulfuric ester hydrolase activity
J4N40_09355	COG1115	amino acid carrier protein
J4N40_09365	COG1280	lysine exporter protein (LysE YggA)
J4N40_09370	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
J4N40_09415	COG2199	diguanylate cyclase activity
J4N40_09470	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
J4N40_09470	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
J4N40_09495	COG2916	Histone family protein nucleoid-structuring protein H-NS
J4N40_09505	COG1160	GTP binding
J4N40_09510	COG1160	GTP binding
J4N40_09550	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
J4N40_09585	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
J4N40_09590	COG1560	Kdo2-lipid A biosynthetic process
J4N40_09605	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
J4N40_09610	COG3063	Type IV pilus biogenesis stability protein PilW
J4N40_09650	COG2315	Protein conserved in bacteria
J4N40_09655	COG1846	Transcriptional regulator
J4N40_09665	COG2200	EAL domain
J4N40_09670	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
J4N40_09675	COG1012	belongs to the aldehyde dehydrogenase family
J4N40_09680	COG2957	Belongs to the agmatine deiminase family
J4N40_09690	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
J4N40_09695	COG1012	belongs to the aldehyde dehydrogenase family
J4N40_09700	COG1917	Cupin 2, conserved barrel domain protein
J4N40_09700	COG1396	sequence-specific DNA binding
J4N40_09705	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
J4N40_09710	COG0174	glutamine synthetase
J4N40_09715	COG1757	Na H antiporter
J4N40_09870	COG0625	glutathione transferase activity
J4N40_09880	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
J4N40_09890	COG2195	Cleaves the N-terminal amino acid of tripeptides
J4N40_09900	COG0601	transmembrane transport
J4N40_09905	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J4N40_09925	COG3291	Pkd domain containing protein
J4N40_09935	COG1177	transmembrane transport
J4N40_09945	COG3842	ATPase activity
J4N40_09950	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
J4N40_09955	COG2423	ornithine cyclodeaminase activity
J4N40_09970	COG3938	Belongs to the proline racemase family
J4N40_10000	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
J4N40_10005	COG1451	nucleotide metabolic process
J4N40_10015	COG0583	DNA-binding transcription factor activity
J4N40_10035	COG4138	Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system
J4N40_10040	COG4139	cobalamin transport
J4N40_10045	COG2988	succinylglutamate desuccinylase activity
J4N40_10065	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
J4N40_10070	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
J4N40_10080	COG1823	symporter activity
J4N40_10085	COG2925	Exonuclease
J4N40_10090	COG1380	Effector of murein hydrolase LrgA
J4N40_10095	COG1346	cytolysis
J4N40_10100	COG0295	cytidine deaminase activity
J4N40_10105	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
J4N40_10110	COG0500	methyltransferase
J4N40_10120	COG0776	regulation of translation
J4N40_10130	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J4N40_10130	COG0072	phenylalanine-tRNA ligase activity
J4N40_10135	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
J4N40_10165	COG0393	Putative heavy-metal-binding
J4N40_10175	COG0291	Belongs to the bacterial ribosomal protein bL35 family
J4N40_10185	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
J4N40_10205	COG1228	amidohydrolase
J4N40_10210	COG0010	Belongs to the arginase family
J4N40_10215	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
J4N40_10220	COG2986	histidine ammonia-lyase
J4N40_10235	COG0247	lactate metabolic process
J4N40_10235	COG0277	FAD linked oxidase domain protein
J4N40_10270	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
J4N40_10285	COG1643	Atp-dependent helicase
J4N40_10290	COG0281	malic enzyme
J4N40_10295	COG2949	membrane
J4N40_10300	COG0471	metal ion transport
J4N40_10325	COG0492	ferredoxin-NADP+ reductase activity
J4N40_10330	COG4988	ABC transporter
J4N40_10335	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
J4N40_10345	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
J4N40_10355	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J4N40_10355	COG4191	Histidine kinase
J4N40_10370	COG3070	regulator of competence-specific genes
J4N40_10380	COG2431	L-lysine efflux transmembrane transporter activity
J4N40_10390	COG0076	glutamate decarboxylase activity
J4N40_10395	COG1737	Transcriptional regulator
J4N40_10405	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
J4N40_10410	COG2985	domain, Protein
J4N40_10410	COG3273	potassium ion transport
J4N40_10415	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
J4N40_10450	COG0534	Mate efflux family protein
J4N40_10455	COG0702	epimerase
J4N40_10465	COG2814	Major facilitator Superfamily
J4N40_10495	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
J4N40_10515	COG3313	Fe-S protein
J4N40_10525	COG4134	Bacterial extracellular solute-binding protein
J4N40_10530	COG4135	transport system, permease component
J4N40_10535	COG4136	ATPase activity
J4N40_10540	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
J4N40_10550	COG3604	Transcriptional regulator
J4N40_10555	COG1151	hydroxylamine reductase activity
J4N40_10560	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
J4N40_10570	COG0564	pseudouridine synthase activity
J4N40_10575	COG0733	neurotransmitter:sodium symporter activity
J4N40_10585	COG0626	cystathionine gamma-synthase activity
J4N40_10590	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
J4N40_10595	COG5380	lipid catabolic process
J4N40_10600	COG2818	Glycosylase
J4N40_10620	COG1983	PspC domain protein
J4N40_10630	COG1842	Phage shock protein A
J4N40_10635	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
J4N40_10650	COG4171	peptide transport system, permease
J4N40_10660	COG4172	Belongs to the ABC transporter superfamily
J4N40_10670	COG1227	inorganic diphosphatase activity
J4N40_10685	COG0243	molybdopterin cofactor binding
J4N40_10690	COG3005	denitrification pathway
J4N40_10695	COG4459	periplasmic nitrate reductase
J4N40_10700	COG0390	transport system, permease component
J4N40_10710	COG2116	formate transmembrane transporter activity
J4N40_10735	COG1434	Gram-negative-bacterium-type cell wall biogenesis
J4N40_10740	COG1435	thymidine kinase activity
J4N40_10745	COG0215	cysteine-tRNA ligase activity
J4N40_10750	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
J4N40_10755	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
J4N40_10760	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
J4N40_10765	COG3012	SEC-C Motif Domain Protein
J4N40_10770	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
J4N40_10770	COG0140	phosphoribosyl-ATP diphosphatase activity
J4N40_10780	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
J4N40_10785	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
J4N40_10790	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
J4N40_10790	COG0131	Imidazoleglycerol-phosphate dehydratase
J4N40_10800	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
J4N40_10810	COG1757	Na H antiporter
J4N40_10820	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
J4N40_10835	COG2915	High frequency lysogenization protein hflD homolog
J4N40_10840	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
J4N40_10850	COG2268	Band 7 protein
J4N40_10860	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
J4N40_10875	COG0300	oxidoreductase activity
J4N40_10895	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
J4N40_10915	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
J4N40_10920	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
J4N40_10940	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
J4N40_10950	COG1674	ftsk spoiiie
J4N40_10960	COG0686	Belongs to the AlaDH PNT family
J4N40_10970	COG0583	DNA-binding transcription factor activity
J4N40_10995	COG3568	Endonuclease Exonuclease Phosphatase
J4N40_11020	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
J4N40_11025	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J4N40_11045	COG1271	oxidase subunit
J4N40_11050	COG1294	oxidase, subunit
J4N40_11065	COG5002	protein histidine kinase activity
J4N40_11065	COG0784	Response regulator, receiver
J4N40_11075	COG0754	glutathionylspermidine amidase activity
J4N40_11085	COG3766	membrane
J4N40_11095	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
J4N40_11100	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
J4N40_11105	COG2885	chlorophyll binding
J4N40_11110	COG0823	Involved in the tonB-independent uptake of proteins
J4N40_11125	COG0811	peptide transport
J4N40_11130	COG0824	Thioesterase
J4N40_11140	COG4890	Cyd operon protein YbgT
J4N40_11145	COG1294	oxidase, subunit
J4N40_11150	COG1271	oxidase subunit
J4N40_11155	COG2255	four-way junction helicase activity
J4N40_11160	COG0632	four-way junction helicase activity
J4N40_11165	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
J4N40_11170	COG0217	transcriptional regulatory protein
J4N40_11180	COG1801	Protein of unknown function DUF72
J4N40_11190	COG0500	methyltransferase
J4N40_11195	COG0189	ligase activity
J4N40_11195	COG4067	protein conserved in archaea
J4N40_11215	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
J4N40_11220	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
J4N40_11230	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
J4N40_11235	COG1434	Gram-negative-bacterium-type cell wall biogenesis
J4N40_11240	COG0745	RESPONSE REGULATOR receiver
J4N40_11245	COG3381	protein complex oligomerization
J4N40_11250	COG1609	Transcriptional regulator
J4N40_11255	COG3070	regulator of competence-specific genes
J4N40_11275	COG0297	glycogen (starch) synthase activity
J4N40_11280	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
J4N40_11285	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
J4N40_11305	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
J4N40_11310	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
J4N40_11315	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
J4N40_11320	COG0542	response to heat
J4N40_11325	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
J4N40_11330	COG1278	Cold shock
J4N40_11340	COG1187	pseudouridine synthase activity
J4N40_11345	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
J4N40_11350	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
J4N40_11355	COG1199	ATP-dependent helicase activity
J4N40_11360	COG0730	response to heat
J4N40_11365	COG3923	Primosomal replication protein n
J4N40_11375	COG0708	Exodeoxyribonuclease III
J4N40_11415	COG1882	Formate acetyltransferase
J4N40_11425	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
J4N40_11435	COG3013	Belongs to the UPF0304 family
J4N40_11440	COG2766	serine protein kinase
J4N40_11445	COG2718	Belongs to the UPF0229 family
J4N40_11450	COG2719	SpoVR family
J4N40_11470	COG1132	(ABC) transporter
J4N40_11480	COG0658	competence protein
J4N40_11480	COG2333	competence protein COMEC
J4N40_11490	COG4591	ABC-type transport system involved in lipoprotein release permease component
J4N40_11495	COG1136	(ABC) transporter
J4N40_11500	COG4591	ABC-type transport system involved in lipoprotein release permease component
J4N40_11510	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
J4N40_11525	COG1252	NADH dehydrogenase
J4N40_11530	COG3150	esterase
J4N40_11555	COG0537	adenosine 5'-monophosphoramidase activity
J4N40_11580	COG0516	GMP reductase activity
J4N40_11580	COG0517	IMP dehydrogenase activity
J4N40_11585	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
J4N40_11610	COG3126	Type III secretion system lipoprotein chaperone (YscW)
J4N40_11615	COG1946	Acyl-CoA thioesterase
J4N40_11625	COG1522	sequence-specific DNA binding
J4N40_11630	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
J4N40_11645	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
J4N40_11650	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J4N40_11695	COG0477	Major facilitator Superfamily
J4N40_11700	COG2855	membrane
J4N40_11720	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
J4N40_11730	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
J4N40_11735	COG1169	isochorismate synthase
J4N40_11740	COG0436	Aminotransferase
J4N40_11745	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
J4N40_11750	COG0232	Belongs to the dGTPase family. Type 2 subfamily
J4N40_11765	COG1555	photosystem II stabilization
J4N40_11770	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
J4N40_11775	COG0776	regulation of translation
J4N40_11780	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
J4N40_11785	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
J4N40_11795	COG0544	peptidyl-prolyl cis-trans isomerase activity
J4N40_11810	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
J4N40_11815	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
J4N40_11820	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
J4N40_11825	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
J4N40_11840	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
J4N40_11845	COG0569	domain protein
J4N40_11850	COG0513	Belongs to the DEAD box helicase family
J4N40_11885	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J4N40_11890	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J4N40_11905	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
J4N40_11910	COG1216	Glycosyl transferase, family 2
J4N40_11915	COG2986	histidine ammonia-lyase
J4N40_11940	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
J4N40_11950	COG1028	Short-chain dehydrogenase reductase Sdr
J4N40_11965	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
J4N40_11970	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
J4N40_11980	COG2951	lytic endotransglycosylase activity
J4N40_11985	COG3100	YcgL domain-containing protein
J4N40_11990	COG0850	regulation of cytokinetic process
J4N40_11995	COG2894	cell division
J4N40_12000	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
J4N40_12005	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
J4N40_12010	COG0318	PFAM AMP-dependent synthetase and ligase
J4N40_12015	COG2267	carboxylic ester hydrolase activity
J4N40_12020	COG3065	identical protein binding
J4N40_12030	COG1214	PFAM Peptidase M22, glycoprotease
J4N40_12035	COG1199	ATP-dependent helicase activity
J4N40_12040	COG0788	formyltetrahydrofolate deformylase activity
J4N40_12045	COG3102	Protein conserved in bacteria
J4N40_12050	COG0018	arginyl-trna synthetase
J4N40_12075	COG1918	ferrous iron import across plasma membrane
J4N40_12080	COG4977	sequence-specific DNA binding
J4N40_12085	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
J4N40_12090	COG1121	(ABC) transporter
J4N40_12095	COG1108	ABC-type Mn2 Zn2 transport systems permease components
J4N40_12105	COG0045	succinate-CoA ligase (ADP-forming) activity
J4N40_12110	COG0508	dehydrogenase complex catalyzes the overall conversion of
J4N40_12115	COG0567	Dehydrogenase, E1 component
J4N40_12120	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
J4N40_12125	COG1053	succinate dehydrogenase
J4N40_12130	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
J4N40_12145	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
J4N40_12155	COG0033	Phosphoglucomutase
J4N40_12160	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
J4N40_12165	COG0596	Alpha beta hydrolase
J4N40_12175	COG0716	FMN binding
J4N40_12185	COG0735	belongs to the Fur family
J4N40_12190	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
J4N40_12195	COG1263	PTS System
J4N40_12195	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J4N40_12195	COG2190	(PTS) system
J4N40_12200	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
J4N40_12205	COG1846	Transcriptional regulator
J4N40_12205	COG1940	carbohydrate kinase activity
J4N40_12210	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
J4N40_12210	COG4651	solute:proton antiporter activity
J4N40_12215	COG0367	asparagine synthase
J4N40_12220	COG0250	Participates in transcription elongation, termination and antitermination
J4N40_12225	COG3104	oligopeptide transport
J4N40_12230	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
J4N40_12240	COG0326	Molecular chaperone. Has ATPase activity
J4N40_12245	COG3710	Transcriptional regulator
J4N40_12265	COG0622	Phosphoesterase
J4N40_12290	COG1090	epimerase
J4N40_12300	COG3118	belongs to the thioredoxin family
J4N40_12305	COG0330	HflC and HflK could
J4N40_12325	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
J4N40_12330	COG3115	cell septum assembly
J4N40_12335	COG2981	High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway
J4N40_12340	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
J4N40_12345	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
J4N40_12350	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
J4N40_12355	COG2190	(PTS) system
J4N40_12360	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
J4N40_12365	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
J4N40_12370	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
J4N40_12375	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
J4N40_12385	COG3951	Flagellar rod assembly protein muramidase FlgJ
J4N40_12385	COG1705	Flagellar rod assembly protein muramidase FlgJ
J4N40_12390	COG1706	bacterial-type flagellum-dependent cell motility
J4N40_12395	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
J4N40_12405	COG4787	bacterial-type flagellum-dependent cell motility
J4N40_12410	COG1749	Flagellar hook protein flgE
J4N40_12420	COG1558	bacterial-type flagellum-dependent cell motility
J4N40_12425	COG1815	bacterial-type flagellum-dependent cell motility
J4N40_12430	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
J4N40_12435	COG0784	Response regulator, receiver
J4N40_12435	COG0835	chemotaxis
J4N40_12490	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
J4N40_12500	COG2217	Heavy metal translocating P-type atpase
J4N40_12500	COG2608	mercury ion transmembrane transporter activity
J4N40_12540	COG2840	Smr protein MutS2
J4N40_12545	COG1187	pseudouridine synthase activity
J4N40_12550	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
J4N40_12555	COG0737	Belongs to the 5'-nucleotidase family
J4N40_12560	COG2877	3-deoxy-8-phosphooctulonate synthase activity
J4N40_12565	COG2912	Transglutaminase-like superfamily
J4N40_12570	COG3094	Invasion gene expression up-regulator, SirB
J4N40_12575	COG2890	protein-(glutamine-N5) methyltransferase activity
J4N40_12585	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
J4N40_12590	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
J4N40_12595	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
J4N40_12600	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
J4N40_12605	COG0193	aminoacyl-tRNA hydrolase activity
J4N40_12610	COG0012	GTP binding
J4N40_12715	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
J4N40_12720	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
J4N40_12725	COG1702	phosphate starvation-inducible protein PhoH
J4N40_12730	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
J4N40_12735	COG4535	Mg2 and Co2 transporter CorC
J4N40_12740	COG0815	Transfers the fatty acyl group on membrane lipoproteins
J4N40_12745	COG2888	peptidyl-tyrosine sulfation
J4N40_12750	COG0495	leucyl-tRNA aminoacylation
J4N40_12755	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
J4N40_12760	COG1466	dna polymerase III delta subunit
J4N40_12765	COG0799	negative regulation of ribosome biogenesis
J4N40_12770	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
J4N40_12775	COG0768	penicillin binding
J4N40_12780	COG0772	Belongs to the SEDS family
J4N40_12785	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
J4N40_12790	COG1686	Belongs to the peptidase S11 family
J4N40_12800	COG0321	lipoyl(octanoyl) transferase activity
J4N40_12805	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
J4N40_12810	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
J4N40_12815	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
J4N40_12830	COG0366	Alpha amylase catalytic
J4N40_12835	COG1263	PTS System
J4N40_12835	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J4N40_12845	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
J4N40_12850	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
J4N40_12855	COG2011	ABC-type metal ion transport system permease component
J4N40_12860	COG1464	Belongs to the NlpA lipoprotein family
J4N40_12865	COG5595	Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310)
J4N40_12875	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
J4N40_12875	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
J4N40_12890	COG1611	Belongs to the LOG family
J4N40_12895	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
J4N40_12905	COG2363	Small membrane protein
J4N40_12915	COG0583	DNA-binding transcription factor activity
J4N40_12920	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
J4N40_12920	COG0301	tRNA thio-modification
J4N40_12930	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
J4N40_12935	COG1722	exodeoxyribonuclease VII activity
J4N40_12940	COG0142	geranyltranstransferase activity
J4N40_12945	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
J4N40_12950	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
J4N40_12955	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
J4N40_12965	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
J4N40_12980	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
J4N40_12980	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
J4N40_12985	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
J4N40_12990	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
J4N40_12995	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
J4N40_13005	COG1073	alpha beta
J4N40_13010	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
J4N40_13015	COG2252	PERMEase
J4N40_13020	COG2195	Cleaves the N-terminal amino acid of tripeptides
J4N40_13050	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
J4N40_13050	COG0047	phosphoribosylformylglycinamidine synthase activity
J4N40_13055	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
J4N40_13065	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
J4N40_13095	COG0484	heat shock protein binding
J4N40_13105	COG1301	dicarboxylic acid transport
J4N40_13110	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
J4N40_13115	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
J4N40_13125	COG0497	DNA recombination
J4N40_13135	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
J4N40_13140	COG2914	Belongs to the UPF0125 (RnfH) family
J4N40_13145	COG2867	negative regulation of translational initiation
J4N40_13150	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
J4N40_13170	COG0583	DNA-binding transcription factor activity
J4N40_13175	COG3153	acetyltransferase
J4N40_13175	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
J4N40_13195	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
J4N40_13200	COG2873	o-acetylhomoserine
J4N40_13215	COG1115	amino acid carrier protein
J4N40_13220	COG1584	GPR1 FUN34 yaaH family protein
J4N40_13230	COG1757	Na H antiporter
J4N40_13240	COG0516	GMP reductase activity
J4N40_13240	COG0517	IMP dehydrogenase activity
J4N40_13260	COG1160	GTP binding
J4N40_13265	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
J4N40_13270	COG2976	Protein conserved in bacteria
J4N40_13275	COG0124	histidyl-tRNA synthetase
J4N40_13280	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
J4N40_13295	COG0105	UTP biosynthetic process
J4N40_13305	COG2975	iron-sulfur cluster assembly
J4N40_13310	COG0633	Ferredoxin
J4N40_13315	COG0443	Heat shock 70 kDa protein
J4N40_13330	COG0822	iron-sulfur transferase activity
J4N40_13335	COG1104	cysteine desulfurase activity
J4N40_13345	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
J4N40_13350	COG0483	inositol monophosphate 1-phosphatase activity
J4N40_13365	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
J4N40_13370	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
J4N40_13375	COG1862	Preprotein translocase
J4N40_13385	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
J4N40_13395	COG0517	IMP dehydrogenase activity
J4N40_13405	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
J4N40_13410	COG0583	DNA-binding transcription factor activity
J4N40_13415	COG0450	alkyl hydroperoxide reductase
J4N40_13420	COG3142	Participates in the control of copper homeostasis
J4N40_13430	COG0704	Plays a role in the regulation of phosphate uptake
J4N40_13435	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
J4N40_13440	COG0581	inorganic phosphate transmembrane transporter activity
J4N40_13445	COG0573	inorganic phosphate transmembrane transporter activity
J4N40_13450	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
J4N40_13455	COG0248	Ppx GppA phosphatase
J4N40_13465	COG5002	protein histidine kinase activity
J4N40_13470	COG0745	RESPONSE REGULATOR receiver
J4N40_13475	COG2974	May be involved in recombination
J4N40_13480	COG0826	peptidase U32
J4N40_13485	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
J4N40_13540	COG0542	response to heat
J4N40_13550	COG0564	pseudouridine synthase activity
J4N40_13555	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
J4N40_13565	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
J4N40_13570	COG0077	Prephenate dehydratase
J4N40_13570	COG1605	Chorismate mutase
J4N40_13575	COG1986	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions
J4N40_13580	COG2973	This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region
J4N40_13590	COG0488	(ABC) transporter
J4N40_13600	COG0739	heme binding
J4N40_13605	COG0287	Prephenate dehydrogenase
J4N40_13605	COG1605	Chorismate mutase
J4N40_13610	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
J4N40_13615	COG1472	Belongs to the glycosyl hydrolase 3 family
J4N40_13620	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
J4N40_13640	COG1966	Carbon starvation protein
J4N40_13645	COG3275	phosphorelay sensor kinase activity
J4N40_13650	COG3279	Response regulator of the LytR AlgR family
J4N40_13660	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
J4N40_13665	COG1047	Peptidyl-prolyl cis-trans
J4N40_13680	COG0196	riboflavin kinase activity
J4N40_13685	COG0728	peptidoglycan biosynthetic process
J4N40_13690	COG0268	Binds directly to 16S ribosomal RNA
J4N40_13695	COG0640	Transcriptional regulator
J4N40_13700	COG0583	DNA-binding transcription factor activity
J4N40_13705	COG1283	sodium-dependent phosphate transmembrane transporter activity
J4N40_13720	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
J4N40_13755	COG3550	peptidyl-serine autophosphorylation
J4N40_13780	COG1278	Cold shock
J4N40_13800	COG1278	Cold shock
J4N40_13840	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
J4N40_13845	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
J4N40_13850	COG0730	response to heat
J4N40_13875	COG0667	Aldo Keto reductase
J4N40_13885	COG2204	response regulator
J4N40_13900	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
J4N40_13905	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
J4N40_13910	COG4974	Belongs to the 'phage' integrase family
J4N40_13915	COG0716	FMN binding
J4N40_13925	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
J4N40_13930	COG0513	Belongs to the DEAD box helicase family
J4N40_13935	COG3022	response to hydroperoxide
J4N40_13940	COG1115	amino acid carrier protein
J4N40_13955	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
J4N40_13960	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
J4N40_13965	COG3445	Acts as a radical domain for damaged PFL and possibly other radical proteins
J4N40_13975	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
J4N40_13980	COG0083	homoserine kinase activity
J4N40_14000	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
J4N40_14010	COG0745	RESPONSE REGULATOR receiver
J4N40_14020	COG5002	protein histidine kinase activity
J4N40_14020	COG0784	Response regulator, receiver
J4N40_14020	COG2198	Histidine kinase
J4N40_14025	COG5001	Diguanylate cyclase
J4N40_14025	COG4251	negative regulation of phosphorylation
J4N40_14025	COG3706	GGDEF domain
J4N40_14025	COG2203	Gaf domain
J4N40_14030	COG1242	4 iron, 4 sulfur cluster binding
J4N40_14035	COG0069	glutamate synthase activity
J4N40_14035	COG0070	glutamate synthase
J4N40_14035	COG0067	glutamate synthase
J4N40_14045	COG0067	glutamate synthase
J4N40_14045	COG0069	glutamate synthase activity
J4N40_14045	COG0070	glutamate synthase
J4N40_14050	COG0493	'glutamate synthase
J4N40_14060	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
J4N40_14075	COG2860	membrane
J4N40_14080	COG0583	DNA-binding transcription factor activity
J4N40_14085	COG0730	response to heat
J4N40_14100	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
J4N40_14105	COG0505	Belongs to the CarA family
J4N40_14115	COG0494	nUDIX hydrolase
J4N40_14120	COG0653	protein targeting
J4N40_14130	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
J4N40_14135	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
J4N40_14140	COG0849	cell division
J4N40_14145	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
J4N40_14160	COG0772	Belongs to the SEDS family
J4N40_14165	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
J4N40_14170	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
J4N40_14175	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
J4N40_14180	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
J4N40_14185	COG0768	penicillin binding
J4N40_14190	COG3116	cell division
J4N40_14205	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
J4N40_14220	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
J4N40_14225	COG2823	Periplasmic or secreted lipoprotein
J4N40_14230	COG2969	positive regulation of protein catabolic process
J4N40_14235	COG0625	glutathione transferase activity
J4N40_14240	COG2857	Cytochrome c1
J4N40_14245	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
J4N40_14250	COG0723	plastoquinol--plastocyanin reductase activity
J4N40_14255	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
J4N40_14265	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
J4N40_14270	COG3105	Protein conserved in bacteria
J4N40_14280	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
J4N40_14285	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
J4N40_14295	COG3150	esterase
J4N40_14305	COG3151	Protein conserved in bacteria
J4N40_14310	COG0494	nUDIX hydrolase
J4N40_14315	COG1538	Outer membrane efflux protein
J4N40_14320	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
J4N40_14320	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
J4N40_14325	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
J4N40_14340	COG3025	triphosphatase activity
J4N40_14345	COG1392	Phosphate transport regulator
J4N40_14350	COG0306	phosphate transporter
J4N40_14355	COG4991	sh3 domain protein
J4N40_14360	COG0405	Gamma-glutamyltransferase
J4N40_14370	COG3267	Type II secretory pathway component ExeA
J4N40_14370	COG3409	Peptidoglycan-binding domain 1 protein
J4N40_14380	COG1968	undecaprenyl-diphosphatase activity
J4N40_14385	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
J4N40_14390	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
J4N40_14395	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
J4N40_14400	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
J4N40_14405	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
J4N40_14410	COG0828	Belongs to the bacterial ribosomal protein bS21 family
J4N40_14415	COG1610	YqeY-like protein
J4N40_14420	COG0358	DNA primase activity
J4N40_14480	COG2213	PTS system mannitol-specific
J4N40_14480	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
J4N40_14490	COG3722	fumarate hydratase activity
J4N40_14505	COG1461	Dihydroxyacetone kinase
J4N40_14510	COG2376	Dihydroxyacetone kinase
J4N40_14520	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
J4N40_14525	COG1349	DNA-binding transcription factor activity
J4N40_14530	COG0469	pyruvate kinase activity
J4N40_14545	COG0440	acetolactate synthase activity
J4N40_14550	COG0028	Belongs to the TPP enzyme family
J4N40_14555	COG1022	Amp-dependent synthetase and ligase
J4N40_14560	COG0583	DNA-binding transcription factor activity
J4N40_14580	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
J4N40_14585	COG0473	3-isopropylmalate dehydrogenase activity
J4N40_14605	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
J4N40_14610	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
J4N40_14615	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
J4N40_14620	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
J4N40_14625	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
J4N40_14630	COG2967	ApaG domain
J4N40_14635	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
J4N40_14650	COG2966	Psort location CytoplasmicMembrane, score
J4N40_14655	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
J4N40_14665	COG0261	This protein binds to 23S rRNA in the presence of protein L20
J4N40_14670	COG0142	geranyltranstransferase activity
J4N40_14690	COG2358	TRAP transporter, solute receptor (TAXI family
J4N40_14705	COG1902	pentaerythritol trinitrate reductase activity
J4N40_14710	COG0583	DNA-binding transcription factor activity
J4N40_14715	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
J4N40_14720	COG1178	ABC-type Fe3 transport system permease component
J4N40_14725	COG4143	(ABC) transporter
J4N40_14730	COG0163	prenyltransferase activity
J4N40_14735	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
J4N40_14740	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
J4N40_14745	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
J4N40_14755	COG2105	PFAM AIG2 family protein
J4N40_14760	COG2911	Protein conserved in bacteria
J4N40_14765	COG0729	surface antigen
J4N40_14770	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
J4N40_14780	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
J4N40_14795	COG4181	ATPase activity
J4N40_14815	COG0529	Catalyzes the synthesis of activated sulfate
J4N40_14820	COG0471	metal ion transport
J4N40_14820	COG3273	potassium ion transport
J4N40_14825	COG2895	sulfate adenylyltransferase (ATP) activity
J4N40_14830	COG0175	sulfate reduction
J4N40_14835	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
J4N40_14835	COG1648	precorrin-2 dehydrogenase activity
J4N40_14850	COG0513	Belongs to the DEAD box helicase family
J4N40_14855	COG2153	protein acetylation
J4N40_14865	COG0545	Peptidyl-prolyl cis-trans isomerase
J4N40_14875	COG0203	ribosomal protein L17
J4N40_14880	COG0202	RNA polymerase activity
J4N40_14890	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
J4N40_14895	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
J4N40_14900	COG0257	Belongs to the bacterial ribosomal protein bL36 family
J4N40_14905	COG0201	protein transport
J4N40_14910	COG0200	Binds to the 23S rRNA
J4N40_14915	COG1841	ribosomal large subunit assembly
J4N40_14930	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
J4N40_14935	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
J4N40_14945	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
J4N40_14950	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
J4N40_14960	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
J4N40_14965	COG0255	Belongs to the universal ribosomal protein uL29 family
J4N40_14975	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
J4N40_14980	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
J4N40_14985	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
J4N40_14990	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
J4N40_15000	COG0088	Forms part of the polypeptide exit tunnel
J4N40_15005	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
J4N40_15015	COG0254	rRNA binding
J4N40_15020	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
J4N40_15025	COG1609	Transcriptional regulator
J4N40_15035	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
J4N40_15040	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
J4N40_15045	COG1575	Belongs to the MenA family. Type 1 subfamily
J4N40_15050	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
J4N40_15060	COG1494	fructose-1,6-bisphosphatase
J4N40_15090	COG0149	triose-phosphate isomerase activity
J4N40_15110	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
J4N40_15115	COG1482	cell wall glycoprotein biosynthetic process
J4N40_15140	COG0438	transferase activity, transferring glycosyl groups
J4N40_15165	COG2089	acid synthase
J4N40_15205	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
J4N40_15215	COG1560	Kdo2-lipid A biosynthetic process
J4N40_15225	COG0859	PFAM glycosyl transferase family 9
J4N40_15230	COG1519	Transferase
J4N40_15245	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
J4N40_15250	COG1028	Short-chain dehydrogenase reductase Sdr
J4N40_15260	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
J4N40_15290	COG3642	lipopolysaccharide core region biosynthetic process
J4N40_15295	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
J4N40_15300	COG0859	PFAM glycosyl transferase family 9
J4N40_15305	COG0463	Glycosyl transferase, family 2
J4N40_15320	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
J4N40_15345	COG2003	Belongs to the UPF0758 family
J4N40_15350	COG0840	transmembrane signaling receptor activity
J4N40_15355	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
J4N40_15360	COG1309	transcriptional regulator
J4N40_15365	COG1560	Kdo2-lipid A biosynthetic process
J4N40_15370	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
J4N40_15375	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
J4N40_15380	COG1561	YicC-like family, N-terminal region
J4N40_15390	COG4608	Belongs to the ABC transporter superfamily
J4N40_15395	COG0444	Belongs to the ABC transporter superfamily
J4N40_15400	COG0747	negative chemotaxis
J4N40_15405	COG4239	(ABC) transporter, permease
J4N40_15410	COG4174	ABC transporter (Permease)
J4N40_15430	COG0811	peptide transport
J4N40_15435	COG0848	biopolymer transport protein
J4N40_15450	COG0194	GDP metabolic process
J4N40_15455	COG1758	RNA polymerase activity
J4N40_15460	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
J4N40_15465	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
J4N40_15470	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
J4N40_15475	COG2233	PERMEase
J4N40_15495	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
J4N40_15505	COG2183	response to ionizing radiation
J4N40_15520	COG1040	competence protein
J4N40_15530	COG0494	nUDIX hydrolase
J4N40_15535	COG1218	3'(2'),5'-bisphosphate nucleotidase
J4N40_15545	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
J4N40_15550	COG3297	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
J4N40_15555	COG3156	type II secretion system protein K
J4N40_15560	COG4795	General secretion pathway protein
J4N40_15565	COG2165	general secretion pathway protein
J4N40_15570	COG2165	general secretion pathway protein
J4N40_15575	COG2165	general secretion pathway protein
J4N40_15580	COG1459	type II secretion system
J4N40_15585	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
J4N40_15595	COG3031	protein transport across the cell outer membrane
J4N40_15600	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
J4N40_15605	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
J4N40_15610	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
J4N40_15620	COG0456	acetyltransferase
J4N40_15625	COG1490	D-aminoacyl-tRNA deacylase activity
J4N40_15630	COG1295	ribonuclease BN
J4N40_15640	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
J4N40_15645	COG1217	gtp-binding protein TYPA
J4N40_15650	COG0174	glutamine synthetase
J4N40_15660	COG3852	Histidine kinase
J4N40_15665	COG2204	response regulator
J4N40_15675	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
J4N40_15705	COG0218	Necessary for normal cell division and for the maintenance of normal septation
J4N40_15710	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
J4N40_15710	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
J4N40_15715	COG0456	acetyltransferase
J4N40_15725	COG0084	hydrolase, TatD family'
J4N40_15730	COG0805	protein transport
J4N40_15735	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
J4N40_15745	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
J4N40_15750	COG3165	ubiquinone biosynthetic process from chorismate
J4N40_15755	COG2226	methyltransferase
J4N40_15760	COG1322	Protein conserved in bacteria
J4N40_15775	COG0628	permease
J4N40_15805	COG1597	lipid kinase activity
J4N40_15835	COG2081	HI0933 family
J4N40_15845	COG1528	Iron-storage protein
J4N40_15850	COG0589	response to stress
J4N40_15865	COG0742	ribosomal rna small subunit methyltransferase
J4N40_15870	COG5001	Diguanylate cyclase
J4N40_15870	COG5002	protein histidine kinase activity
J4N40_15875	COG1522	sequence-specific DNA binding
J4N40_15885	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
J4N40_15890	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
J4N40_15895	COG0583	DNA-binding transcription factor activity
J4N40_15900	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
J4N40_15905	COG0800	Aldolase
J4N40_15910	COG2610	gluconate transmembrane transporter activity
J4N40_15915	COG3265	gluconokinase activity
J4N40_15920	COG0129	dihydroxy-acid dehydratase activity
J4N40_15935	COG0583	DNA-binding transcription factor activity
J4N40_15940	COG1609	Transcriptional regulator
J4N40_15950	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J4N40_15955	COG0601	transmembrane transport
J4N40_15960	COG4166	transmembrane transport
J4N40_16015	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J4N40_16020	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
J4N40_16025	COG2960	long-chain fatty acid transporting porin activity
J4N40_16030	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
J4N40_16035	COG0583	DNA-binding transcription factor activity
J4N40_16075	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
J4N40_16080	COG1739	Uncharacterized protein family UPF0029
J4N40_16090	COG0183	Belongs to the thiolase family
J4N40_16095	COG0604	alcohol dehydrogenase
J4N40_16110	COG0425	Belongs to the sulfur carrier protein TusA family
J4N40_16120	COG2119	membrane
J4N40_16135	COG0366	Alpha amylase catalytic
J4N40_16140	COG3977	Valine--pyruvate aminotransferase
J4N40_16145	COG0071	Belongs to the small heat shock protein (HSP20) family
J4N40_16155	COG0187	DNA topoisomerase II activity
J4N40_16165	COG0592	DNA-directed DNA polymerase activity
J4N40_16170	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
J4N40_16185	COG1126	abc transporter atp-binding protein
J4N40_16195	COG0594	ribonuclease P activity
J4N40_16205	COG0706	membrane insertase activity
J4N40_16215	COG4974	Belongs to the 'phage' integrase family
J4N40_16250	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
J4N40_16260	COG3645	SOS response
J4N40_16300	COG1395	domain, Protein
J4N40_16310	COG0488	(ABC) transporter
J4N40_16315	COG1505	serine-type exopeptidase activity
J4N40_16325	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J4N40_16335	COG2067	long-chain fatty acid transport protein
J4N40_16345	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
J4N40_16370	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
J4N40_16390	COG3383	formate dehydrogenase (NAD+) activity
J4N40_16400	COG0842	Transport permease protein
J4N40_16405	COG1131	(ABC) transporter
J4N40_16420	COG1881	PFAM PEBP family protein
J4N40_16430	COG0798	PFAM Bile acid sodium symporter
J4N40_16445	COG1733	regulation of RNA biosynthetic process
J4N40_16470	COG4989	oxidoreductase activity
J4N40_16495	COG0814	amino acid
J4N40_16510	COG3314	Sporulation integral membrane protein YlbJ
J4N40_16530	COG0739	heme binding
J4N40_16535	COG5001	Diguanylate cyclase
J4N40_16540	COG0583	DNA-binding transcription factor activity
J4N40_16545	COG2814	Major facilitator Superfamily
J4N40_16560	COG0697	spore germination
J4N40_16565	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
J4N40_16575	COG0179	Fumarylacetoacetate (FAA) hydrolase
J4N40_16595	COG1280	lysine exporter protein (LysE YggA)
J4N40_16605	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
J4N40_16610	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
J4N40_16615	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
J4N40_16620	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
J4N40_16625	COG1845	cytochrome c oxidase, subunit III
J4N40_16645	COG1612	heme a metabolic process
J4N40_16650	COG0109	protoheme IX farnesyltransferase activity
J4N40_16655	COG0545	Peptidyl-prolyl cis-trans isomerase
J4N40_16685	COG1278	Cold shock
J4N40_16690	COG3036	rescue of stalled ribosome
J4N40_16695	COG2199	diguanylate cyclase activity
J4N40_16710	COG1132	(ABC) transporter
J4N40_16720	COG1538	Outer membrane efflux protein
J4N40_16725	COG0784	Response regulator, receiver
J4N40_16725	COG2205	protein histidine kinase activity
J4N40_16750	COG0840	transmembrane signaling receptor activity
J4N40_16755	COG0783	Belongs to the Dps family
J4N40_16765	COG2133	pyrroloquinoline quinone binding
J4N40_16770	COG1454	alcohol dehydrogenase
J4N40_16775	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
J4N40_16800	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
J4N40_16805	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
J4N40_16810	COG3186	Phenylalanine-4-hydroxylase
J4N40_16835	COG3530	Putative quorum-sensing-regulated virulence factor
J4N40_16850	COG2814	Major facilitator Superfamily
J4N40_16855	COG0513	Belongs to the DEAD box helicase family
J4N40_16860	COG4628	conserved protein (DUF2132)
J4N40_16870	COG0133	tryptophan synthase activity
J4N40_16875	COG1278	Cold shock
J4N40_16885	COG2039	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
J4N40_16895	COG0523	cobalamin synthesis protein
J4N40_16900	COG0513	Belongs to the DEAD box helicase family
J4N40_16920	COG2200	EAL domain
J4N40_16925	COG1119	ATPase activity
J4N40_17020	COG4776	Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction
J4N40_17025	COG0513	Belongs to the DEAD box helicase family
J4N40_17035	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
J4N40_17045	COG1073	alpha beta
J4N40_17050	COG1073	alpha beta
J4N40_17065	COG0730	response to heat
J4N40_17080	COG0735	belongs to the Fur family
J4N40_17085	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
J4N40_17095	COG0523	cobalamin synthesis protein
J4N40_17100	COG2988	succinylglutamate desuccinylase activity
J4N40_17105	COG0739	heme binding
J4N40_17110	COG0523	cobalamin synthesis protein
J4N40_17125	COG2095	MarC family integral membrane protein
J4N40_17155	COG1024	Enoyl-CoA hydratase
J4N40_17160	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
J4N40_17165	COG1960	acyl-CoA dehydrogenase activity
J4N40_17175	COG0183	Belongs to the thiolase family
J4N40_17190	COG1024	Enoyl-CoA hydratase
J4N40_17195	COG1024	Enoyl-CoA hydratase
J4N40_17205	COG1028	Short-chain dehydrogenase reductase Sdr
J4N40_17210	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
J4N40_17215	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
J4N40_17220	COG1845	cytochrome c oxidase, subunit III
J4N40_17225	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
J4N40_17230	COG0109	protoheme IX farnesyltransferase activity
J4N40_17235	COG0446	pyridine nucleotide-disulphide oxidoreductase
J4N40_17235	COG1902	pentaerythritol trinitrate reductase activity
J4N40_17250	COG1012	belongs to the aldehyde dehydrogenase family
J4N40_17260	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
J4N40_17290	COG1126	abc transporter atp-binding protein
J4N40_17295	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J4N40_17300	COG4215	(ABC) transporter
J4N40_17305	COG4160	amino acid transport
J4N40_17375	COG0443	Heat shock 70 kDa protein
J4N40_17380	COG2847	Copper chaperone PCu(A)C
J4N40_17450	COG0814	amino acid
J4N40_17460	COG0243	molybdopterin cofactor binding
J4N40_17465	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
J4N40_17465	COG1648	precorrin-2 dehydrogenase activity
J4N40_17490	COG1116	anion transmembrane transporter activity
J4N40_17490	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
J4N40_17495	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
J4N40_17500	COG1116	anion transmembrane transporter activity
J4N40_17505	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
J4N40_17505	COG2146	nitrite reductase [NAD(P)H] activity
J4N40_17550	COG0515	serine threonine protein kinase
J4N40_17550	COG2815	serine threonine protein kinase
J4N40_17585	COG0631	protein serine/threonine phosphatase activity
J4N40_17655	COG0420	3'-5' exonuclease activity
J4N40_17660	COG0419	ATPase involved in DNA repair
J4N40_17670	COG3040	lipid binding
J4N40_17680	COG1288	antiporter activity
J4N40_17690	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
J4N40_17705	COG2425	protein containing a von Willebrand factor type A (vWA) domain
J4N40_17720	COG0583	DNA-binding transcription factor activity
J4N40_17725	COG0277	FAD linked oxidase domain protein
J4N40_17740	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
J4N40_17790	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
J4N40_17810	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
J4N40_17815	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
J4N40_17825	COG2116	formate transmembrane transporter activity
J4N40_17845	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
J4N40_17880	COG3118	belongs to the thioredoxin family
J4N40_17885	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
J4N40_17910	COG2271	Major facilitator Superfamily
J4N40_17915	COG3851	Histidine kinase
J4N40_17920	COG2197	response regulator
J4N40_17930	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
J4N40_17935	COG0583	DNA-binding transcription factor activity
J4N40_17940	COG0243	molybdopterin cofactor binding
J4N40_17955	COG0384	phenazine biosynthesis protein PhzF
J4N40_17960	COG1794	racemase activity, acting on amino acids and derivatives
J4N40_17990	COG1328	CTP reductase activity
J4N40_17995	COG0602	queuosine metabolic process
J4N40_18000	COG0534	Mate efflux family protein
J4N40_18005	COG2207	Transcriptional regulator
J4N40_18015	COG0189	ligase activity
J4N40_18015	COG4067	protein conserved in archaea
J4N40_18025	COG3111	PFAM Bacterial OB fold (BOF) protein
J4N40_18035	COG0725	ABC transporter, periplasmic molybdate-binding protein
J4N40_18040	COG4149	molybdate abc transporter
J4N40_18045	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
J4N40_18055	COG4251	negative regulation of phosphorylation
J4N40_18055	COG3706	GGDEF domain
J4N40_18055	COG5001	Diguanylate cyclase
J4N40_18055	COG2203	Gaf domain
J4N40_18075	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
J4N40_18080	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
J4N40_18105	COG3140	Belongs to the UPF0181 family
J4N40_18120	COG0583	DNA-binding transcription factor activity
J4N40_18250	COG0023	Translation Initiation Factor
J4N40_18260	COG1181	Belongs to the D-alanine--D-alanine ligase family
J4N40_18270	COG0045	succinate-CoA ligase (ADP-forming) activity
J4N40_18270	COG1042	CoA-binding domain protein
J4N40_18270	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
J4N40_18275	COG0583	DNA-binding transcription factor activity
J4N40_18290	COG3447	MASE1 domain protein
J4N40_18290	COG5002	protein histidine kinase activity
J4N40_18290	COG5001	Diguanylate cyclase
J4N40_18295	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
J4N40_18300	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
J4N40_18305	COG1984	allophanate hydrolase subunit 2
J4N40_18315	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
J4N40_18320	COG4181	ATPase activity
J4N40_18330	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
J4N40_18335	COG5001	Diguanylate cyclase
J4N40_18335	COG3300	MHYT domain
J4N40_18370	COG4533	DNA binding
J4N40_18380	COG2050	protein possibly involved in aromatic compounds catabolism
J4N40_18395	COG2067	long-chain fatty acid transport protein
J4N40_18400	COG2267	carboxylic ester hydrolase activity
J4N40_18425	COG0737	Belongs to the 5'-nucleotidase family
J4N40_18430	COG3593	DNA synthesis involved in DNA repair
J4N40_18440	COG0583	DNA-binding transcription factor activity
J4N40_18445	COG2116	formate transmembrane transporter activity
J4N40_18450	COG2353	YceI-like domain
J4N40_18455	COG3038	cytochrome b561
J4N40_18475	COG0513	Belongs to the DEAD box helicase family
J4N40_18490	COG0840	transmembrane signaling receptor activity
J4N40_18495	COG0546	phosphoglycolate phosphatase activity
J4N40_18510	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
J4N40_18515	COG2759	Belongs to the formate--tetrahydrofolate ligase family
J4N40_18520	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
J4N40_18530	COG2207	Transcriptional regulator
J4N40_18535	COG1979	alcohol dehydrogenase
J4N40_18545	COG1126	abc transporter atp-binding protein
J4N40_18550	COG0765	amino acid transport
J4N40_18555	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J4N40_18560	COG0765	amino acid transport
J4N40_18565	COG2200	EAL domain
J4N40_18565	COG2199	diguanylate cyclase activity
J4N40_18565	COG2203	Gaf domain
J4N40_18580	COG1609	Transcriptional regulator
J4N40_18585	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
J4N40_18585	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
J4N40_18590	COG1105	Belongs to the carbohydrate kinase PfkB family
J4N40_18595	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J4N40_18595	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
J4N40_18595	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J4N40_18625	COG0404	The glycine cleavage system catalyzes the degradation of glycine
J4N40_18635	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
J4N40_18640	COG0509	glycine decarboxylation via glycine cleavage system
J4N40_18650	COG0346	lactoylglutathione lyase activity
J4N40_18655	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
J4N40_18660	COG0583	DNA-binding transcription factor activity
J4N40_18665	COG0697	spore germination
J4N40_18670	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
J4N40_18720	COG2176	DNA-directed DNA polymerase activity
J4N40_18765	COG0242	peptide deformylase activity
J4N40_18795	COG2239	Acts as a magnesium transporter
J4N40_18815	COG0346	lactoylglutathione lyase activity
J4N40_18820	COG1902	pentaerythritol trinitrate reductase activity
J4N40_18830	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
J4N40_18830	COG2755	lipolytic protein G-D-S-L family
J4N40_18840	COG5642	Protein of unknown function (DUF2384)
J4N40_18845	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
J4N40_18880	COG2076	Multidrug Resistance protein
J4N40_18900	COG2962	Rard protein
J4N40_18915	COG0835	chemotaxis
J4N40_18915	COG0784	Response regulator, receiver
J4N40_18920	COG2197	response regulator
J4N40_18930	COG3706	GGDEF domain
J4N40_18935	COG2197	response regulator
J4N40_18940	COG5001	Diguanylate cyclase
J4N40_18940	COG3300	MHYT domain
J4N40_18945	COG0784	Response regulator, receiver
J4N40_18945	COG2205	protein histidine kinase activity
J4N40_18950	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
J4N40_18970	COG0456	acetyltransferase
J4N40_18970	COG1214	PFAM Peptidase M22, glycoprotease
J4N40_18980	COG3069	C4-dicarboxylate transmembrane transporter activity
J4N40_19005	COG3111	PFAM Bacterial OB fold (BOF) protein
J4N40_19010	COG1597	lipid kinase activity
J4N40_19015	COG0583	DNA-binding transcription factor activity
J4N40_19020	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
J4N40_19050	COG0714	Associated with various cellular activities
J4N40_19055	COG0641	radical SAM
J4N40_19060	COG3119	arylsulfatase activity
J4N40_19070	COG3119	arylsulfatase activity
J4N40_19075	COG0745	RESPONSE REGULATOR receiver
J4N40_19090	COG0784	Response regulator, receiver
J4N40_19090	COG2198	Histidine kinase
J4N40_19090	COG2205	protein histidine kinase activity
J4N40_19095	COG1879	ABC-type sugar transport system periplasmic component
J4N40_19100	COG1803	Methylglyoxal synthase
J4N40_19105	COG0210	DNA helicase
J4N40_19110	COG1289	transmembrane transporter activity
J4N40_19140	COG4771	TonB-dependent receptor
J4N40_19140	COG1629	transport
J4N40_19150	COG0789	Transcriptional regulator
J4N40_19155	COG4604	ABC transporter, ATP-binding protein
J4N40_19160	COG4605	iron ion homeostasis
J4N40_19165	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J4N40_19170	COG4607	ABC-type enterochelin transport system periplasmic component
J4N40_19180	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
J4N40_19190	COG1609	Transcriptional regulator
J4N40_19195	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
J4N40_19200	COG1879	ABC-type sugar transport system periplasmic component
J4N40_19205	COG1172	Belongs to the binding-protein-dependent transport system permease family
J4N40_19210	COG1129	ABC transporter
J4N40_19215	COG1869	D-ribose catabolic process
J4N40_19220	COG5001	Diguanylate cyclase
J4N40_19275	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
J4N40_19285	COG0784	Response regulator, receiver
J4N40_19285	COG2205	protein histidine kinase activity
J4N40_19300	COG0330	HflC and HflK could
J4N40_19315	COG0517	IMP dehydrogenase activity
J4N40_19315	COG4175	Glycine betaine
J4N40_19320	COG4176	ABC-type proline glycine betaine transport system permease component
J4N40_19335	COG1012	belongs to the aldehyde dehydrogenase family
J4N40_19340	COG1309	transcriptional regulator
J4N40_19350	COG1028	Short-chain dehydrogenase reductase Sdr
J4N40_19365	COG1024	Enoyl-CoA hydratase
J4N40_19370	COG1960	acyl-CoA dehydrogenase activity
J4N40_19380	COG0183	Belongs to the thiolase family
J4N40_19390	COG1960	acyl-CoA dehydrogenase activity
J4N40_19395	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
J4N40_19405	COG4770	biotin carboxylase activity
J4N40_19420	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
J4N40_19420	COG3264	Mechanosensitive ion channel
J4N40_19425	COG0110	maltose O-acetyltransferase activity
J4N40_19430	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
J4N40_19435	COG1271	oxidase subunit
J4N40_19440	COG1294	oxidase, subunit
J4N40_19450	COG0384	phenazine biosynthesis protein PhzF
J4N40_19460	COG3527	Alpha-acetolactate decarboxylase
J4N40_19475	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
J4N40_19500	COG0500	methyltransferase
J4N40_19530	COG1022	Amp-dependent synthetase and ligase
J4N40_19555	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
J4N40_19560	COG1263	PTS System
J4N40_19560	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J4N40_19565	COG1486	melibiose metabolic process
J4N40_19570	COG2188	Transcriptional regulator
J4N40_19575	COG1320	monovalent cation:proton antiporter activity
J4N40_19580	COG2212	antiporter activity
J4N40_19585	COG1863	multisubunit Na H antiporter MnhE subunit
J4N40_19590	COG0651	ATP synthesis coupled electron transport
J4N40_19595	COG1006	Multisubunit Na H antiporter MnhC subunit
J4N40_19600	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
J4N40_19600	COG2111	Na H antiporter
J4N40_19610	COG0589	response to stress
J4N40_19615	COG4221	oxidoreductase activity
J4N40_19620	COG0583	DNA-binding transcription factor activity
J4N40_19630	COG2814	Major facilitator Superfamily
J4N40_19695	COG1522	sequence-specific DNA binding
J4N40_19730	COG0515	serine threonine protein kinase
J4N40_19755	COG3501	Rhs element vgr protein
J4N40_19795	COG0739	heme binding
J4N40_19820	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J4N40_19825	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J4N40_19835	COG2207	Transcriptional regulator
J4N40_19840	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
J4N40_19840	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J4N40_19840	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J4N40_19855	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J4N40_19860	COG3537	Alpha-1,2-mannosidase
J4N40_19865	COG3537	Alpha-1,2-mannosidase
J4N40_19870	COG3537	Alpha-1,2-mannosidase
J4N40_19890	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
J4N40_19890	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
J4N40_19905	COG4989	oxidoreductase activity
J4N40_19920	COG0038	chloride channel
J4N40_19940	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
J4N40_19955	COG2897	thiosulfate sulfurtransferase activity
J4N40_19965	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
J4N40_19970	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
J4N40_19975	COG0840	transmembrane signaling receptor activity
J4N40_19980	COG2814	Major facilitator Superfamily
J4N40_19985	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
J4N40_20000	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
J4N40_20010	COG0840	transmembrane signaling receptor activity
J4N40_20030	COG2195	Cleaves the N-terminal amino acid of tripeptides
J4N40_20045	COG2197	response regulator
J4N40_20050	COG3850	Histidine kinase
J4N40_20055	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
J4N40_20065	COG0243	molybdopterin cofactor binding
J4N40_20075	COG3005	denitrification pathway
J4N40_20085	COG3243	poly(R)-hydroxyalkanoic acid synthase
J4N40_20095	COG0183	Belongs to the thiolase family
J4N40_20105	COG1280	lysine exporter protein (LysE YggA)
J4N40_20115	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
J4N40_20120	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
J4N40_20170	COG1846	Transcriptional regulator
J4N40_20175	COG0784	Response regulator, receiver
J4N40_20175	COG2205	protein histidine kinase activity
J4N40_20180	COG1879	ABC-type sugar transport system periplasmic component
J4N40_20185	COG2827	Endonuclease containing a URI domain
J4N40_20190	COG3132	Protein of unknown function, DUF480
J4N40_20230	COG0583	DNA-binding transcription factor activity
J4N40_20240	COG0531	amino acid
J4N40_20255	COG2205	protein histidine kinase activity
J4N40_20260	COG0745	RESPONSE REGULATOR receiver
J4N40_20285	COG1566	PFAM secretion protein HlyD family protein
J4N40_20290	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
J4N40_20295	COG2239	Acts as a magnesium transporter
J4N40_20300	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
J4N40_20305	COG0402	S-adenosylhomocysteine deaminase activity
J4N40_20310	COG1418	mRNA catabolic process
J4N40_20320	COG2814	Major facilitator Superfamily
J4N40_20330	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
J4N40_20350	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
J4N40_20365	COG0745	RESPONSE REGULATOR receiver
J4N40_20370	COG2205	protein histidine kinase activity
J4N40_20380	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
J4N40_20385	COG2194	sulfuric ester hydrolase activity
J4N40_20405	COG4667	esterase of the alpha-beta hydrolase superfamily
J4N40_20410	COG1741	Belongs to the pirin family
J4N40_20415	COG1278	Cold shock
J4N40_20430	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
J4N40_20435	COG0678	peroxiredoxin activity
J4N40_20435	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
J4N40_20445	COG1686	Belongs to the peptidase S11 family
J4N40_20450	COG0625	glutathione transferase activity
J4N40_20460	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
J4N40_20465	COG1621	beta-fructofuranosidase activity
J4N40_20470	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
J4N40_20475	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J4N40_20475	COG1263	PTS System
J4N40_20500	COG1028	Short-chain dehydrogenase reductase Sdr
J4N40_20515	COG3746	phosphate-selective porin O and P
J4N40_20530	COG0300	oxidoreductase activity
J4N40_20535	COG0583	DNA-binding transcription factor activity
J4N40_20540	COG2207	Transcriptional regulator
J4N40_20540	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
J4N40_20545	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
J4N40_20565	COG0513	Belongs to the DEAD box helicase family
J4N40_20575	COG0583	DNA-binding transcription factor activity
J4N40_20590	COG1902	pentaerythritol trinitrate reductase activity
J4N40_20595	COG1063	alcohol dehydrogenase
J4N40_20605	COG1028	Short-chain dehydrogenase reductase Sdr
J4N40_20615	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
J4N40_20620	COG0006	proline dipeptidase activity
J4N40_20625	COG3608	succinylglutamate desuccinylase aspartoacylase
J4N40_20630	COG1522	sequence-specific DNA binding
J4N40_20635	COG1012	belongs to the aldehyde dehydrogenase family
J4N40_20640	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
J4N40_20645	COG3122	Protein conserved in bacteria
J4N40_20660	COG0583	DNA-binding transcription factor activity
J4N40_20665	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
J4N40_20670	COG0252	asparaginase activity
J4N40_20675	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
J4N40_20690	COG2197	response regulator
J4N40_20695	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
J4N40_20720	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
J4N40_20750	COG3842	ATPase activity
J4N40_20770	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
J4N40_20800	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
J4N40_20805	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
J4N40_20835	COG0583	DNA-binding transcription factor activity
J4N40_20845	COG4948	Mandelate Racemase Muconate Lactonizing
J4N40_20875	COG1342	Belongs to the UPF0251 family
J4N40_20880	COG4176	ABC-type proline glycine betaine transport system permease component
J4N40_20885	COG4175	Glycine betaine
J4N40_20885	COG3448	diguanylate cyclase activity
J4N40_20890	COG3015	lipoprotein NlpE involved in copper resistance
J4N40_20895	COG3713	MltA-interacting MipA family protein
J4N40_20910	COG0583	DNA-binding transcription factor activity
J4N40_20935	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
J4N40_20945	COG1335	isochorismatase
J4N40_20960	COG1349	DNA-binding transcription factor activity
J4N40_20965	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
J4N40_20965	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
J4N40_20970	COG2070	2-Nitropropane dioxygenase
J4N40_20975	COG0531	amino acid
J4N40_20980	COG4302	ethanolamine ammonia-lyase activity
J4N40_20985	COG4303	Ethanolamine ammonia lyase large subunit
J4N40_20995	COG1309	transcriptional regulator
J4N40_21015	COG1280	lysine exporter protein (LysE YggA)
J4N40_21025	COG0459	protein refolding
J4N40_21030	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
J4N40_21035	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
J4N40_21050	COG1304	FMN binding
J4N40_21075	COG4786	Flagellar basal body rod
J4N40_21075	COG1256	bacterial-type flagellum assembly
J4N40_21085	COG1706	bacterial-type flagellum-dependent cell motility
J4N40_21090	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
J4N40_21095	COG4786	Flagellar basal body rod
J4N40_21100	COG4787	bacterial-type flagellum-dependent cell motility
J4N40_21115	COG1558	bacterial-type flagellum-dependent cell motility
J4N40_21120	COG1815	bacterial-type flagellum-dependent cell motility
J4N40_21140	COG0741	lytic transglycosylase activity
J4N40_21145	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
J4N40_21165	COG1760	l-serine dehydratase
J4N40_21180	COG0583	DNA-binding transcription factor activity
J4N40_21190	COG2866	Carboxypeptidase
J4N40_21195	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
J4N40_21205	COG2990	Protein conserved in bacteria
J4N40_21230	COG3842	ATPase activity
J4N40_21235	COG1840	ABC-type Fe3 transport system, periplasmic component
J4N40_21245	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
J4N40_21255	COG1609	Transcriptional regulator
J4N40_21285	COG3240	lipase activity
J4N40_21290	COG1309	transcriptional regulator
J4N40_21305	COG0577	efflux transmembrane transporter activity
J4N40_21305	COG1136	(ABC) transporter
J4N40_21310	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J4N40_21315	COG2067	long-chain fatty acid transport protein
J4N40_21325	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
J4N40_21340	COG1011	Hydrolase
J4N40_21375	COG0110	maltose O-acetyltransferase activity
J4N40_21380	COG1765	OsmC-like protein
J4N40_21385	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
J4N40_21385	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
J4N40_21400	COG3046	protein related to deoxyribodipyrimidine photolyase
J4N40_21405	COG0415	Belongs to the DNA photolyase family
J4N40_21410	COG3706	GGDEF domain
J4N40_21425	COG3706	GGDEF domain
J4N40_21440	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
J4N40_21455	COG3033	Beta-eliminating lyase
J4N40_21465	COG1271	oxidase subunit
J4N40_21470	COG1294	oxidase, subunit
J4N40_21485	COG3179	chitinase
J4N40_21490	COG0579	oxidoreductase
J4N40_21510	COG3706	GGDEF domain
J4N40_21540	COG0583	DNA-binding transcription factor activity
J4N40_21560	COG0189	ligase activity
J4N40_21565	COG4067	protein conserved in archaea
J4N40_21565	COG0189	ligase activity
J4N40_21575	COG1166	arginine decarboxylase activity
J4N40_21580	COG0010	Belongs to the arginase family
J4N40_21585	COG2814	Major facilitator Superfamily
J4N40_21590	COG1770	oligopeptidase
J4N40_21605	COG1108	ABC-type Mn2 Zn2 transport systems permease components
J4N40_21610	COG1121	(ABC) transporter
J4N40_21615	COG0803	Belongs to the bacterial solute-binding protein 9 family
J4N40_21660	COG0848	biopolymer transport protein
J4N40_21665	COG0811	peptide transport
J4N40_21670	COG0811	peptide transport
J4N40_21690	COG0745	RESPONSE REGULATOR receiver
J4N40_21695	COG0584	glycerophosphoryl diester phosphodiesterase
J4N40_21705	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
J4N40_21770	COG0312	modulator of DNA gyrase
J4N40_21775	COG0312	modulator of DNA gyrase
J4N40_21780	COG0351	phosphomethylpyrimidine kinase
J4N40_21785	COG1116	anion transmembrane transporter activity
J4N40_21790	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
J4N40_21795	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
J4N40_21800	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
J4N40_21820	COG0243	molybdopterin cofactor binding
J4N40_21825	COG3005	denitrification pathway
J4N40_21830	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
J4N40_21835	COG1028	Short-chain dehydrogenase reductase Sdr
J4N40_21850	COG0456	acetyltransferase
J4N40_21870	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
J4N40_21875	COG1929	Belongs to the glycerate kinase type-1 family
J4N40_21880	COG2610	gluconate transmembrane transporter activity
J4N40_21885	COG3835	regulator
J4N40_21945	COG3047	cAMP biosynthetic process
J4N40_21950	COG1357	PFAM Pentapeptide repeats (8 copies)
J4N40_21980	COG2375	cellular response to nickel ion
J4N40_21985	COG0583	DNA-binding transcription factor activity
J4N40_21990	COG2162	N-hydroxyarylamine O-acetyltransferase activity
J4N40_21995	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
J4N40_22010	COG2199	diguanylate cyclase activity
J4N40_22020	COG0561	phosphatase activity
J4N40_22025	COG0583	DNA-binding transcription factor activity
J4N40_22040	COG0564	pseudouridine synthase activity
J4N40_22045	COG0534	Mate efflux family protein
J4N40_22060	COG3123	guanosine phosphorylase activity
J4N40_22075	COG0596	Alpha beta hydrolase
J4N40_22100	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
J4N40_22110	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
J4N40_22115	COG2169	Transcriptional regulator
J4N40_22115	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
J4N40_22125	COG2259	Doxx family
J4N40_22130	COG1741	Belongs to the pirin family
J4N40_22150	COG0363	glucosamine-6-phosphate deaminase activity
J4N40_22160	COG0786	glutamate:sodium symporter activity
J4N40_22165	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
J4N40_22170	COG1131	(ABC) transporter
J4N40_22180	COG0786	glutamate:sodium symporter activity
J4N40_22200	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
J4N40_22205	COG3279	Response regulator of the LytR AlgR family
J4N40_22210	COG3275	phosphorelay sensor kinase activity
J4N40_22230	COG1136	(ABC) transporter
J4N40_22240	COG0772	Belongs to the SEDS family
J4N40_22265	COG3236	hydrolase activity, hydrolyzing N-glycosyl compounds
J4N40_22265	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
J4N40_22275	COG0444	Belongs to the ABC transporter superfamily
J4N40_22280	COG4608	Belongs to the ABC transporter superfamily
J4N40_22305	COG1444	tRNA N-acetyltransferase activity
J4N40_22325	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
J4N40_22330	COG1263	PTS System
J4N40_22330	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J4N40_22335	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
J4N40_22350	COG4166	transmembrane transport
J4N40_22395	COG0259	pyridoxamine-phosphate oxidase activity
J4N40_22420	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
J4N40_22455	COG1132	(ABC) transporter
J4N40_22465	COG0513	Belongs to the DEAD box helicase family
J4N40_22470	COG2258	MOSC domain
J4N40_22520	COG3634	alkyl hydroperoxide reductase activity
J4N40_22530	COG1846	Transcriptional regulator
J4N40_22535	COG1764	response to oxidative stress
J4N40_22580	COG0577	efflux transmembrane transporter activity
J4N40_22585	COG1136	(ABC) transporter
J4N40_22595	COG0826	peptidase U32
J4N40_22620	COG1653	transport
J4N40_22625	COG0019	diaminopimelate decarboxylase activity
J4N40_22630	COG4264	IucA IucC family
J4N40_22655	COG4772	TonB-dependent receptor
J4N40_22660	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
J4N40_22665	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J4N40_22670	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J4N40_22675	COG1120	ATPase activity
J4N40_22680	COG0840	transmembrane signaling receptor activity
J4N40_22685	COG0612	Peptidase, M16
J4N40_22710	COG2814	Major facilitator Superfamily
J4N40_22720	COG1609	Transcriptional regulator
J4N40_22725	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
J4N40_22740	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
J4N40_22740	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
J4N40_22750	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
J4N40_22755	COG1609	Transcriptional regulator
J4N40_22805	COG1760	l-serine dehydratase
J4N40_22815	COG4580	involved in the transport of maltose and maltodextrins
J4N40_22835	COG2356	endonuclease I
J4N40_22855	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
J4N40_22860	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
J4N40_22865	COG1162	GTPase activity
J4N40_22870	COG1263	PTS System
J4N40_22870	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J4N40_22875	COG1999	signal sequence binding
J4N40_22890	COG2909	trisaccharide binding
J4N40_22895	COG0058	SHG alpha-glucan phosphorylase activity
J4N40_22900	COG1640	4-alpha-glucanotransferase
J4N40_22905	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
J4N40_22915	COG0366	Alpha amylase catalytic
J4N40_22930	COG3366	ferrous iron transmembrane transporter activity
J4N40_22935	COG0700	Nucleoside recognition
J4N40_22940	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
J4N40_22945	COG3339	Conserved Protein
J4N40_22960	COG1301	dicarboxylic acid transport
J4N40_22970	COG0583	DNA-binding transcription factor activity
J4N40_23005	COG2095	MarC family integral membrane protein
J4N40_23010	COG4667	esterase of the alpha-beta hydrolase superfamily
J4N40_23015	COG3397	chitin binding
J4N40_23020	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
J4N40_23025	COG0415	Belongs to the DNA photolyase family
J4N40_23035	COG1054	Belongs to the UPF0176 family
J4N40_23045	COG1686	Belongs to the peptidase S11 family
J4N40_23070	COG0583	DNA-binding transcription factor activity
J4N40_23075	COG4628	conserved protein (DUF2132)
J4N40_23095	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
J4N40_23100	COG0628	permease
J4N40_23140	COG2814	Major facilitator Superfamily
J4N40_23160	COG0745	RESPONSE REGULATOR receiver
J4N40_23165	COG2205	protein histidine kinase activity
J4N40_23180	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
J4N40_23185	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
J4N40_23190	COG1882	Formate acetyltransferase
J4N40_23215	COG1360	Flagellar Motor Protein
J4N40_23220	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
J4N40_23225	COG1191	sigma factor activity
J4N40_23230	COG1580	Controls the rotational direction of flagella during chemotaxis
J4N40_23245	COG1516	flagellar protein fliS
J4N40_23250	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
J4N40_23260	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
J4N40_23275	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
J4N40_23285	COG1987	bacterial-type flagellum assembly
J4N40_23325	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
J4N40_23385	COG0346	lactoylglutathione lyase activity
J4N40_23410	COG0745	RESPONSE REGULATOR receiver
J4N40_23435	COG3300	MHYT domain
J4N40_23435	COG5001	Diguanylate cyclase
J4N40_23440	COG0156	8-amino-7-oxononanoate synthase activity
J4N40_23445	COG1063	alcohol dehydrogenase
J4N40_23480	COG0668	transmembrane transport
J4N40_23490	COG1304	FMN binding
J4N40_23495	COG1620	l-lactate permease
J4N40_23500	COG0583	DNA-binding transcription factor activity
J4N40_23505	COG1505	serine-type exopeptidase activity
J4N40_23510	COG4172	Belongs to the ABC transporter superfamily
J4N40_23520	COG1067	ATP-dependent peptidase activity
J4N40_23530	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
J4N40_23550	COG1247	-acetyltransferase
J4N40_23555	COG0437	4 iron, 4 sulfur cluster binding
J4N40_23560	COG0348	domain, Protein
J4N40_23580	COG1122	ATPase activity
J4N40_23585	COG4720	Psort location CytoplasmicMembrane, score
J4N40_23590	COG1566	PFAM secretion protein HlyD family protein
J4N40_23615	COG0813	purine-nucleoside phosphorylase activity
J4N40_23620	COG3272	Protein of unknown function (DUF1722)
J4N40_23625	COG0789	Transcriptional regulator
J4N40_23630	COG0415	Belongs to the DNA photolyase family
J4N40_23635	COG1376	ErfK ybiS ycfS ynhG family protein
J4N40_23635	COG1388	LysM domain
J4N40_23645	COG0513	Belongs to the DEAD box helicase family
J4N40_23650	COG1770	oligopeptidase
J4N40_23655	COG4771	TonB-dependent receptor
J4N40_23685	COG0573	inorganic phosphate transmembrane transporter activity
J4N40_23690	COG0581	inorganic phosphate transmembrane transporter activity
J4N40_23695	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
J4N40_23710	COG2304	oxidoreductase activity
J4N40_23715	COG2304	oxidoreductase activity
J4N40_23730	COG0714	Associated with various cellular activities
J4N40_23745	COG2197	response regulator
J4N40_23780	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
J4N40_23785	COG1120	ATPase activity
J4N40_23790	COG4774	siderophore transport
J4N40_23795	COG1132	(ABC) transporter
J4N40_23800	COG2205	protein histidine kinase activity
J4N40_23800	COG2205	protein histidine kinase activity
J4N40_23810	COG0569	domain protein
J4N40_23815	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
J4N40_23820	COG0583	DNA-binding transcription factor activity
J4N40_23835	COG1012	belongs to the aldehyde dehydrogenase family
J4N40_23840	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
J4N40_23845	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
J4N40_23855	COG3241	Transfers electrons from cytochrome c551 to cytochrome oxidase
J4N40_23860	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
J4N40_23890	COG2084	Dehydrogenase
J4N40_23895	COG0753	catalase activity
J4N40_23905	COG2130	NADP-dependent
J4N40_23910	COG1309	transcriptional regulator
J4N40_23915	COG3097	Belongs to the UPF0267 family
J4N40_23955	COG3206	protein involved in exopolysaccharide biosynthesis
J4N40_23955	COG0489	protein tyrosine kinase activity
J4N40_23970	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
J4N40_23975	COG3842	ATPase activity
J4N40_23985	COG1175	transmembrane transport
J4N40_23990	COG3833	ABC-type maltose transport systems, permease component
J4N40_24015	COG0477	Major facilitator Superfamily
J4N40_24025	COG1535	isochorismatase
J4N40_24025	COG3433	isochorismatase activity
J4N40_24030	COG1021	2,3-dihydroxybenzoate-AMP ligase
J4N40_24035	COG1169	isochorismate synthase
J4N40_24040	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
J4N40_24050	COG1132	(ABC) transporter
J4N40_24050	COG2375	cellular response to nickel ion
J4N40_24055	COG0076	glutamate decarboxylase activity
J4N40_24060	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J4N40_24075	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J4N40_24080	COG4774	siderophore transport
J4N40_24085	COG4607	ABC-type enterochelin transport system periplasmic component
J4N40_24090	COG4605	iron ion homeostasis
J4N40_24095	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J4N40_24105	COG1028	Short-chain dehydrogenase reductase Sdr
J4N40_24120	COG2354	Protein conserved in bacteria
J4N40_24125	COG0418	dihydroorotase activity
J4N40_24130	COG0401	homolog of Blt101
J4N40_24135	COG3217	Mosc domain protein beta barrel domain protein
J4N40_24135	COG0633	Ferredoxin
J4N40_24135	COG0633	Ferredoxin
J4N40_24135	COG3217	Mosc domain protein beta barrel domain protein
J4N40_24145	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
J4N40_24185	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
J4N40_24190	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J4N40_24200	COG0848	biopolymer transport protein
J4N40_24205	COG0811	peptide transport
J4N40_24210	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
J4N40_24220	COG3721	Heme iron utilization protein
J4N40_24225	COG0748	coenzyme F420 binding
J4N40_24235	COG0835	chemotaxis
J4N40_24235	COG0784	Response regulator, receiver
J4N40_24240	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
J4N40_24245	COG0534	Mate efflux family protein
J4N40_24250	COG0444	Belongs to the ABC transporter superfamily
J4N40_24255	COG4608	Belongs to the ABC transporter superfamily
J4N40_24260	COG0747	negative chemotaxis
J4N40_24270	COG1349	DNA-binding transcription factor activity
J4N40_24275	COG2084	Dehydrogenase
J4N40_24280	COG3395	kinase activity
J4N40_24285	COG0235	Class ii aldolase
J4N40_24290	COG3622	Belongs to the hyi family
J4N40_24295	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
J4N40_24300	COG2610	gluconate transmembrane transporter activity
J4N40_24320	COG0583	DNA-binding transcription factor activity
J4N40_24325	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
J4N40_24335	COG4934	collagen metabolic process
J4N40_24345	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
J4N40_24350	COG0789	Transcriptional regulator
J4N40_24355	COG0366	Alpha amylase catalytic
J4N40_24375	COG2249	NAD(P)H dehydrogenase (quinone) activity
J4N40_24380	COG0589	response to stress