locus-tag class description J4N42_00005 PF00308 Bacterial dnaA protein J4N42_00005 PF08299 Bacterial dnaA protein helix-turn-helix J4N42_00005 PF11638 DnaA N-terminal domain J4N42_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain J4N42_00010 PF02767 DNA polymerase III beta subunit, central domain J4N42_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain J4N42_00015 PF02463 RecF/RecN/SMC N terminal domain J4N42_00020 PF01751 Toprim domain J4N42_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_00020 PF00986 DNA gyrase B subunit, carboxyl terminus J4N42_00020 PF00204 DNA gyrase B J4N42_00020 PF18053 DNA gyrase B subunit insert domain J4N42_00025 PF00011 Hsp20/alpha crystallin family J4N42_00030 PF00155 Aminotransferase class I and II J4N42_00035 PF05746 DALR anticodon binding domain J4N42_00035 PF02092 Glycyl-tRNA synthetase beta subunit J4N42_00040 PF02091 Glycyl-tRNA synthetase alpha subunit J4N42_00045 PF01169 Uncharacterized protein family UPF0016 J4N42_00055 PF01206 Sulfurtransferase TusA J4N42_00065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_00065 PF03466 LysR substrate binding domain J4N42_00070 PF08240 Alcohol dehydrogenase GroES-like domain J4N42_00070 PF00107 Zinc-binding dehydrogenase J4N42_00075 PF00585 C-terminal regulatory domain of Threonine dehydratase J4N42_00075 PF00291 Pyridoxal-phosphate dependent enzyme J4N42_00080 PF00920 Dehydratase family J4N42_00085 PF01063 Amino-transferase class IV J4N42_00095 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J4N42_00095 PF00205 Thiamine pyrophosphate enzyme, central domain J4N42_00095 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J4N42_00100 PF01078 Magnesium chelatase, subunit ChlI J4N42_00100 PF13335 Magnesium chelatase, subunit ChlI C-terminal J4N42_00110 PF01553 Acyltransferase J4N42_00115 PF01323 DSBA-like thioredoxin domain J4N42_00120 PF01636 Phosphotransferase enzyme family J4N42_00125 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase J4N42_00125 PF13746 4Fe-4S dicluster domain J4N42_00125 PF12801 4Fe-4S binding domain J4N42_00130 PF06288 Protein of unknown function (DUF1040) J4N42_00140 PF07070 SpoOM protein J4N42_00145 PF03006 Haemolysin-III related J4N42_00155 PF02386 Cation transport protein J4N42_00160 PF02254 TrkA-N domain J4N42_00160 PF02080 TrkA-C domain J4N42_00165 PF01189 16S rRNA methyltransferase RsmB/F J4N42_00165 PF01029 NusB family J4N42_00170 PF02911 Formyl transferase, C-terminal domain J4N42_00170 PF00551 Formyl transferase J4N42_00175 PF01327 Polypeptide deformylase J4N42_00180 PF01476 LysM domain J4N42_00185 PF02481 DNA recombination-mediator protein A J4N42_00185 PF17782 DprA winged helix domain J4N42_00190 PF04361 Protein of unknown function (DUF494) J4N42_00200 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain J4N42_00200 PF02222 ATP-grasp domain J4N42_00205 PF00731 AIR carboxylase J4N42_00210 PF01300 Telomere recombination J4N42_00215 PF01218 Coproporphyrinogen III oxidase J4N42_00220 PF18317 Shikimate 5'-dehydrogenase C-terminal domain J4N42_00220 PF01488 Shikimate / quinate 5-dehydrogenase J4N42_00220 PF08501 Shikimate dehydrogenase substrate binding domain J4N42_00225 PF07369 Protein of unknown function (DUF1488) J4N42_00230 PF00132 Bacterial transferase hexapeptide (six repeats) J4N42_00270 PF00962 Adenosine/AMP deaminase J4N42_00275 PF00990 Diguanylate cyclase, GGDEF domain J4N42_00275 PF03707 Bacterial signalling protein N terminal repeat J4N42_00275 PF00563 EAL domain J4N42_00280 PF00158 Sigma-54 interaction domain J4N42_00280 PF00072 Response regulator receiver domain J4N42_00280 PF02954 Bacterial regulatory protein, Fis family J4N42_00285 PF00989 PAS fold J4N42_00285 PF00512 His Kinase A (phospho-acceptor) domain J4N42_00285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_00295 PF03951 Glutamine synthetase, beta-Grasp domain J4N42_00295 PF00120 Glutamine synthetase, catalytic domain J4N42_00300 PF03144 Elongation factor Tu domain 2 J4N42_00300 PF00009 Elongation factor Tu GTP binding domain J4N42_00300 PF00679 Elongation factor G C-terminus J4N42_00310 PF03631 Virulence factor BrkB J4N42_00315 PF02580 D-Tyr-tRNA(Tyr) deacylase J4N42_00320 PF00583 Acetyltransferase (GNAT) family J4N42_00320 PF09500 Putative thioesterase (yiiD_Cterm) J4N42_00330 PF01293 Phosphoenolpyruvate carboxykinase J4N42_00335 PF01430 Hsp33 protein J4N42_00340 PF01479 S4 domain J4N42_00345 PF11356 Type II secretion system protein C J4N42_00350 PF00263 Bacterial type II and III secretion system protein J4N42_00350 PF03958 Bacterial type II/III secretion system short domain J4N42_00355 PF00437 Type II/IV secretion system protein J4N42_00360 PF00482 Type II secretion system (T2SS), protein F J4N42_00365 PF07963 Prokaryotic N-terminal methylation motif J4N42_00365 PF08334 Type II secretion system (T2SS), protein G J4N42_00370 PF12019 Type II transport protein GspH J4N42_00375 PF07963 Prokaryotic N-terminal methylation motif J4N42_00375 PF02501 Type II secretion system (T2SS), protein I J4N42_00380 PF07963 Prokaryotic N-terminal methylation motif J4N42_00380 PF11612 Type II secretion system (T2SS), protein J J4N42_00385 PF03934 Type II secretion system (T2SS), protein K J4N42_00390 PF05134 Type II secretion system (T2SS), protein L J4N42_00390 PF12693 GspL periplasmic domain J4N42_00395 PF04612 Type II secretion system (T2SS), protein M J4N42_00400 PF01203 Type II secretion system (T2SS), protein N J4N42_00405 PF00459 Inositol monophosphatase family J4N42_00410 PF00293 NUDIX domain J4N42_00415 PF01521 Iron-sulphur cluster biosynthesis J4N42_00415 PF01106 NifU-like domain J4N42_00420 PF00156 Phosphoribosyl transferase domain J4N42_00425 PF00561 alpha/beta hydrolase fold J4N42_00435 PF16921 Tex protein YqgF-like domain J4N42_00435 PF09371 Tex-like protein N-terminal domain J4N42_00435 PF00575 S1 RNA binding domain J4N42_00435 PF17674 HHH domain J4N42_00440 PF18030 RimK PreATP-grasp domain J4N42_00440 PF08443 RimK-like ATP-grasp domain J4N42_00465 PF01272 Transcription elongation factor, GreA/GreB, C-term J4N42_00465 PF03449 Transcription elongation factor, N-terminal J4N42_00510 PF00072 Response regulator receiver domain J4N42_00510 PF00486 Transcriptional regulatory protein, C terminal J4N42_00515 PF00672 HAMP domain J4N42_00515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_00515 PF00512 His Kinase A (phospho-acceptor) domain J4N42_00520 PF17191 RecG wedge domain J4N42_00520 PF00270 DEAD/DEAH box helicase J4N42_00520 PF00271 Helicase conserved C-terminal domain J4N42_00525 PF12105 SpoU, rRNA methylase, C-terminal J4N42_00525 PF00588 SpoU rRNA Methylase family J4N42_00530 PF02824 TGS domain J4N42_00530 PF04607 Region found in RelA / SpoT proteins J4N42_00530 PF13291 ACT domain J4N42_00535 PF01192 RNA polymerase Rpb6 J4N42_00540 PF00625 Guanylate kinase J4N42_00545 PF00860 Permease family J4N42_00560 PF00892 EamA-like transporter family J4N42_00565 PF08340 Domain of unknown function (DUF1732) J4N42_00565 PF03755 YicC-like family, N-terminal region J4N42_00570 PF03725 3' exoribonuclease family, domain 2 J4N42_00570 PF01138 3' exoribonuclease family, domain 1 J4N42_00575 PF00156 Phosphoribosyl transferase domain J4N42_00580 PF03279 Bacterial lipid A biosynthesis acyltransferase J4N42_00585 PF00440 Bacterial regulatory proteins, tetR family J4N42_00590 PF04127 DNA / pantothenate metabolism flavoprotein J4N42_00590 PF02441 Flavoprotein J4N42_00595 PF04002 RadC-like JAB domain J4N42_00600 PF00830 Ribosomal L28 family J4N42_00605 PF00471 Ribosomal protein L33 J4N42_00615 PF06827 Zinc finger found in FPG and IleRS J4N42_00615 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain J4N42_00615 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain J4N42_00625 PF05686 Glycosyl transferase family 90 J4N42_00630 PF01075 Glycosyltransferase family 9 (heptosyltransferase) J4N42_00635 PF00534 Glycosyl transferases group 1 J4N42_00635 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) J4N42_00650 PF01075 Glycosyltransferase family 9 (heptosyltransferase) J4N42_00655 PF01467 Cytidylyltransferase-like J4N42_00665 PF03279 Bacterial lipid A biosynthesis acyltransferase J4N42_00670 PF08323 Starch synthase catalytic domain J4N42_00670 PF00534 Glycosyl transferases group 1 J4N42_00685 PF01370 NAD dependent epimerase/dehydratase family J4N42_00720 PF01370 NAD dependent epimerase/dehydratase family J4N42_00730 PF02397 Bacterial sugar transferase J4N42_00735 PF13091 PLD-like domain J4N42_00740 PF02237 Biotin protein ligase C terminal domain J4N42_00740 PF03099 Biotin/lipoate A/B protein ligase family J4N42_00740 PF08279 HTH domain J4N42_00745 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain J4N42_00745 PF01565 FAD binding domain J4N42_00765 PF02706 Chain length determinant protein J4N42_00770 PF00166 Chaperonin 10 Kd subunit J4N42_00775 PF00118 TCP-1/cpn60 chaperonin family J4N42_00780 PF11852 Domain of unknown function (DUF3372) J4N42_00780 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J4N42_00780 PF03714 Bacterial pullanase-associated domain J4N42_00780 PF18494 Pullulanase Ins domain J4N42_00780 PF17967 Pullulanase N2 domain J4N42_00785 PF00005 ABC transporter J4N42_00790 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J4N42_00790 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J4N42_00795 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded J4N42_00800 PF06005 Cell division protein ZapB J4N42_00805 PF02219 Methylenetetrahydrofolate reductase J4N42_00810 PF03447 Homoserine dehydrogenase, NAD binding domain J4N42_00810 PF00742 Homoserine dehydrogenase J4N42_00810 PF00696 Amino acid kinase family J4N42_00815 PF01053 Cys/Met metabolism PLP-dependent enzyme J4N42_00820 PF01340 Met Apo-repressor, MetJ J4N42_00825 PF00390 Malic enzyme, N-terminal domain J4N42_00825 PF03949 Malic enzyme, NAD binding domain J4N42_00830 PF01197 Ribosomal protein L31 J4N42_00835 PF18074 Primosomal protein N C-terminal domain J4N42_00835 PF00270 DEAD/DEAH box helicase J4N42_00835 PF17764 3′ DNA-binding domain (3′BD) J4N42_00835 PF00271 Helicase conserved C-terminal domain J4N42_00835 PF18319 PriA DNA helicase Cys-rich region (CRR) domain J4N42_00840 PF00356 Bacterial regulatory proteins, lacI family J4N42_00850 PF00227 Proteasome subunit J4N42_00855 PF00004 ATPase family associated with various cellular activities (AAA) J4N42_00855 PF07724 AAA domain (Cdc48 subfamily) J4N42_00865 PF02313 Fumarate reductase subunit D J4N42_00870 PF02300 Fumarate reductase subunit C J4N42_00875 PF13085 2Fe-2S iron-sulfur cluster binding domain J4N42_00875 PF13183 4Fe-4S dicluster domain J4N42_00880 PF02910 Fumarate reductase flavoprotein C-term J4N42_00880 PF00890 FAD binding domain J4N42_00885 PF00152 tRNA synthetases class II (D, K and N) J4N42_00890 PF06082 Exopolysaccharide biosynthesis protein YbjH J4N42_00900 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF J4N42_00915 PF10531 SLBB domain J4N42_00915 PF02563 Polysaccharide biosynthesis/export protein J4N42_00920 PF01061 ABC-2 type transporter J4N42_00930 PF16363 GDP-mannose 4,6 dehydratase J4N42_00935 PF00483 Nucleotidyl transferase J4N42_00940 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J4N42_00975 PF11380 Stealth protein CR2, conserved region 2 J4N42_00975 PF17102 Stealth protein CR3, conserved region 3 J4N42_00975 PF17103 Stealth protein CR4, conserved region 4 J4N42_00975 PF17101 Stealth protein CR1, conserved region 1 J4N42_00980 PF17101 Stealth protein CR1, conserved region 1 J4N42_00980 PF17103 Stealth protein CR4, conserved region 4 J4N42_00980 PF11380 Stealth protein CR2, conserved region 2 J4N42_00985 PF00534 Glycosyl transferases group 1 J4N42_00985 PF17101 Stealth protein CR1, conserved region 1 J4N42_00985 PF11380 Stealth protein CR2, conserved region 2 J4N42_00985 PF17103 Stealth protein CR4, conserved region 4 J4N42_00985 PF17102 Stealth protein CR3, conserved region 3 J4N42_00990 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain J4N42_00990 PF00753 Metallo-beta-lactamase superfamily J4N42_00990 PF10996 Beta-Casp domain J4N42_00995 PF00005 ABC transporter J4N42_01000 PF02080 TrkA-C domain J4N42_01000 PF03600 Citrate transporter J4N42_01005 PF01507 Phosphoadenosine phosphosulfate reductase family J4N42_01015 PF00009 Elongation factor Tu GTP binding domain J4N42_01020 PF00953 Glycosyl transferase family 4 J4N42_01035 PF00581 Rhodanese-like domain J4N42_01040 PF02556 Preprotein translocase subunit SecB J4N42_01045 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus J4N42_01045 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus J4N42_01050 PF06426 Serine acetyltransferase, N-terminal J4N42_01050 PF00132 Bacterial transferase hexapeptide (six repeats) J4N42_01055 PF10400 Virulence activator alpha C-term J4N42_01055 PF03551 Transcriptional regulator PadR-like family J4N42_01060 PF00311 Phosphoenolpyruvate carboxylase J4N42_01065 PF01546 Peptidase family M20/M25/M40 J4N42_01065 PF07687 Peptidase dimerisation domain J4N42_01070 PF02774 Semialdehyde dehydrogenase, dimerisation domain J4N42_01070 PF01118 Semialdehyde dehydrogenase, NAD binding domain J4N42_01075 PF00696 Amino acid kinase family J4N42_01080 PF00764 Arginosuccinate synthase J4N42_01085 PF14698 Argininosuccinate lyase C-terminal J4N42_01085 PF00583 Acetyltransferase (GNAT) family J4N42_01085 PF00206 Lyase J4N42_01100 PF01042 Endoribonuclease L-PSP J4N42_01105 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N42_01105 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4N42_01110 PF08534 Redoxin J4N42_01110 PF00462 Glutaredoxin J4N42_01115 PF03466 LysR substrate binding domain J4N42_01115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_01120 PF17092 Penicillin-binding protein OB-like domain J4N42_01120 PF00912 Transglycosylase J4N42_01120 PF00905 Penicillin binding protein transpeptidase domain J4N42_01130 PF05137 Fimbrial assembly protein (PilN) J4N42_01140 PF04351 Pilus assembly protein, PilP J4N42_01145 PF07660 Secretin and TonB N terminus short domain J4N42_01145 PF11741 AMIN domain J4N42_01145 PF03958 Bacterial type II/III secretion system short domain J4N42_01145 PF00263 Bacterial type II and III secretion system protein J4N42_01150 PF01202 Shikimate kinase J4N42_01155 PF01761 3-dehydroquinate synthase J4N42_01165 PF02086 D12 class N6 adenine-specific DNA methyltransferase J4N42_01170 PF00834 Ribulose-phosphate 3 epimerase family J4N42_01175 PF13419 Haloacid dehalogenase-like hydrolase J4N42_01180 PF00579 tRNA synthetases class I (W and Y) J4N42_01185 PF01757 Acyltransferase family J4N42_01195 PF00117 Glutamine amidotransferase class-I J4N42_01200 PF00202 Aminotransferase class-III J4N42_01205 PF04958 Arginine N-succinyltransferase beta subunit J4N42_01210 PF00171 Aldehyde dehydrogenase family J4N42_01220 PF13545 Crp-like helix-turn-helix domain J4N42_01220 PF00027 Cyclic nucleotide-binding domain J4N42_01225 PF00485 Phosphoribulokinase / Uridine kinase family J4N42_01230 PF06794 Uncharacterised protein family (UPF0270) J4N42_01235 PF00561 alpha/beta hydrolase fold J4N42_01245 PF12848 ABC transporter J4N42_01245 PF00005 ABC transporter J4N42_01250 PF02525 Flavodoxin-like fold J4N42_01255 PF00999 Sodium/hydrogen exchanger family J4N42_01255 PF02254 TrkA-N domain J4N42_01265 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N42_01270 PF01112 Asparaginase J4N42_01275 PF00709 Adenylosuccinate synthetase J4N42_01280 PF08238 Sel1 repeat J4N42_01285 PF17876 Cold shock domain J4N42_01285 PF00575 S1 RNA binding domain J4N42_01285 PF00773 RNB domain J4N42_01285 PF08206 Ribonuclease B OB domain J4N42_01285 PF08461 Ribonuclease R winged-helix domain J4N42_01290 PF08032 RNA 2'-O ribose methyltransferase substrate binding J4N42_01290 PF00588 SpoU rRNA Methylase family J4N42_01295 PF00338 Ribosomal protein S10p/S20e J4N42_01300 PF00297 Ribosomal protein L3 J4N42_01305 PF00573 Ribosomal protein L4/L1 family J4N42_01310 PF00276 Ribosomal protein L23 J4N42_01315 PF00181 Ribosomal Proteins L2, RNA binding domain J4N42_01315 PF03947 Ribosomal Proteins L2, C-terminal domain J4N42_01320 PF00203 Ribosomal protein S19 J4N42_01325 PF00237 Ribosomal protein L22p/L17e J4N42_01330 PF07650 KH domain J4N42_01330 PF00189 Ribosomal protein S3, C-terminal domain J4N42_01335 PF00252 Ribosomal protein L16p/L10e J4N42_01340 PF00831 Ribosomal L29 protein J4N42_01345 PF00366 Ribosomal protein S17 J4N42_01350 PF00238 Ribosomal protein L14p/L23e J4N42_01355 PF00467 KOW motif J4N42_01355 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 J4N42_01360 PF00281 Ribosomal protein L5 J4N42_01360 PF00673 ribosomal L5P family C-terminus J4N42_01365 PF00253 Ribosomal protein S14p/S29e J4N42_01370 PF00410 Ribosomal protein S8 J4N42_01375 PF00347 Ribosomal protein L6 J4N42_01380 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast J4N42_01385 PF00333 Ribosomal protein S5, N-terminal domain J4N42_01385 PF03719 Ribosomal protein S5, C-terminal domain J4N42_01390 PF00327 Ribosomal protein L30p/L7e J4N42_01395 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A J4N42_01400 PF00344 SecY translocase J4N42_01405 PF00444 Ribosomal protein L36 J4N42_01410 PF00416 Ribosomal protein S13/S18 J4N42_01415 PF00411 Ribosomal protein S11 J4N42_01420 PF00163 Ribosomal protein S4/S9 N-terminal domain J4N42_01420 PF01479 S4 domain J4N42_01425 PF01000 RNA polymerase Rpb3/RpoA insert domain J4N42_01425 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain J4N42_01425 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain J4N42_01430 PF01196 Ribosomal protein L17 J4N42_01440 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J4N42_01440 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N42_01455 PF13673 Acetyltransferase (GNAT) domain J4N42_01465 PF00149 Calcineurin-like phosphoesterase J4N42_01465 PF02872 5'-nucleotidase, C-terminal domain J4N42_01470 PF01507 Phosphoadenosine phosphosulfate reductase family J4N42_01475 PF00009 Elongation factor Tu GTP binding domain J4N42_01480 PF02080 TrkA-C domain J4N42_01480 PF03600 Citrate transporter J4N42_01505 PF00005 ABC transporter J4N42_01520 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) J4N42_01530 PF01625 Peptide methionine sulfoxide reductase J4N42_01535 PF01103 Surface antigen J4N42_01535 PF17243 POTRA domain TamA domain 1 J4N42_01535 PF07244 Surface antigen variable number repeat J4N42_01540 PF04357 TamB, inner membrane protein subunit of TAM complex J4N42_01545 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like J4N42_01555 PF00719 Inorganic pyrophosphatase J4N42_01560 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain J4N42_01565 PF01225 Mur ligase family, catalytic domain J4N42_01565 PF08245 Mur ligase middle domain J4N42_01565 PF02875 Mur ligase family, glutamate ligase domain J4N42_01570 PF02441 Flavoprotein J4N42_01580 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_01585 PF00005 ABC transporter J4N42_01590 PF04751 Protein of unknown function (DUF615) J4N42_01595 PF01523 Putative modulator of DNA gyrase J4N42_01600 PF03448 MgtE intracellular N domain J4N42_01600 PF01769 Divalent cation transporter J4N42_01600 PF00571 CBS domain J4N42_01605 PF00381 PTS HPr component phosphorylation site J4N42_01610 PF03668 P-loop ATPase protein family J4N42_01615 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N42_01620 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein J4N42_01625 PF04963 Sigma-54 factor, core binding domain J4N42_01625 PF04552 Sigma-54, DNA binding domain J4N42_01625 PF00309 Sigma-54 factor, Activator interacting domain (AID) J4N42_01630 PF00005 ABC transporter J4N42_01630 PF12399 Branched-chain amino acid ATP-binding cassette transporter J4N42_01635 PF03968 OstA-like protein J4N42_01650 PF00571 CBS domain J4N42_01650 PF01380 SIS domain J4N42_01655 PF01699 Sodium/calcium exchanger protein J4N42_01660 PF00005 ABC transporter J4N42_01665 PF02405 Permease MlaE J4N42_01670 PF02470 MlaD protein J4N42_01675 PF05494 MlaC protein J4N42_01685 PF01722 BolA-like protein J4N42_01690 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J4N42_01695 PF01553 Acyltransferase J4N42_01725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_01725 PF00672 HAMP domain J4N42_01725 PF17200 Single Cache domain 2 J4N42_01750 PF01464 Transglycosylase SLT domain J4N42_01750 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain J4N42_01755 PF04362 Bacterial Fe(2+) trafficking J4N42_01760 PF14815 NUDIX domain J4N42_01760 PF00633 Helix-hairpin-helix motif J4N42_01760 PF00730 HhH-GPD superfamily base excision DNA repair protein J4N42_01765 PF02390 Putative methyltransferase J4N42_01770 PF04960 Glutaminase J4N42_01775 PF01842 ACT domain J4N42_01775 PF00696 Amino acid kinase family J4N42_01780 PF00266 Aminotransferase class-V J4N42_01790 PF17760 UvrA interaction domain J4N42_01790 PF17755 UvrA DNA-binding domain J4N42_01790 PF00005 ABC transporter J4N42_01795 PF00483 Nucleotidyl transferase J4N42_01800 PF00196 Bacterial regulatory proteins, luxR family J4N42_01805 PF00436 Single-strand binding protein family J4N42_01810 PF00563 EAL domain J4N42_01810 PF17157 Gammaproteobacterial periplasmic sensor domain J4N42_01810 PF00990 Diguanylate cyclase, GGDEF domain J4N42_01830 PF11741 AMIN domain J4N42_01830 PF03958 Bacterial type II/III secretion system short domain J4N42_01830 PF00263 Bacterial type II and III secretion system protein J4N42_01830 PF07660 Secretin and TonB N terminus short domain J4N42_01835 PF01471 Putative peptidoglycan binding domain J4N42_01835 PF13401 AAA domain J4N42_01845 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J4N42_01845 PF00437 Type II/IV secretion system protein J4N42_01850 PF00482 Type II secretion system (T2SS), protein F J4N42_01860 PF07963 Prokaryotic N-terminal methylation motif J4N42_01900 PF04085 rod shape-determining protein MreC J4N42_01905 PF04093 rod shape-determining protein MreD J4N42_01910 PF02545 Maf-like protein J4N42_01915 PF00575 S1 RNA binding domain J4N42_01915 PF10150 Ribonuclease E/G family J4N42_01925 PF00795 Carbon-nitrogen hydrolase J4N42_01930 PF01523 Putative modulator of DNA gyrase J4N42_01940 PF06877 Regulator of ribonuclease activity B J4N42_01985 PF13289 SIR2-like domain J4N42_02030 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J4N42_02030 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J4N42_02035 PF00162 Phosphoglycerate kinase J4N42_02040 PF01116 Fructose-bisphosphate aldolase class-II J4N42_02045 PF05552 Conserved TM helix J4N42_02045 PF00924 Mechanosensitive ion channel J4N42_02055 PF01810 LysE type translocator J4N42_02060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_02060 PF03466 LysR substrate binding domain J4N42_02070 PF07694 5TMR of 5TMR-LYT J4N42_02070 PF00990 Diguanylate cyclase, GGDEF domain J4N42_02080 PF00224 Pyruvate kinase, barrel domain J4N42_02080 PF02887 Pyruvate kinase, alpha/beta domain J4N42_02085 PF08220 DeoR-like helix-turn-helix domain J4N42_02085 PF00455 DeoR C terminal sensor domain J4N42_02090 PF01380 SIS domain J4N42_02095 PF00672 HAMP domain J4N42_02095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_02100 PF13419 Haloacid dehalogenase-like hydrolase J4N42_02105 PF05068 Mannitol repressor J4N42_02110 PF01232 Mannitol dehydrogenase Rossmann domain J4N42_02110 PF08125 Mannitol dehydrogenase C-terminal domain J4N42_02115 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N42_02115 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N42_02115 PF02378 Phosphotransferase system, EIIC J4N42_02130 PF04539 Sigma-70 region 3 J4N42_02130 PF04546 Sigma-70, non-essential region J4N42_02130 PF03979 Sigma-70 factor, region 1.1 J4N42_02130 PF00140 Sigma-70 factor, region 1.2 J4N42_02130 PF04545 Sigma-70, region 4 J4N42_02130 PF04542 Sigma-70 region 2 J4N42_02135 PF10410 DnaB-helicase binding domain of primase J4N42_02135 PF08278 DNA primase DnaG DnaB-binding J4N42_02135 PF08275 DNA primase catalytic core, N-terminal domain J4N42_02135 PF01807 CHC2 zinc finger J4N42_02140 PF09424 Yqey-like protein J4N42_02145 PF01165 Ribosomal protein S21 J4N42_02150 PF00814 Glycoprotease family J4N42_02155 PF00561 alpha/beta hydrolase fold J4N42_02160 PF02660 Glycerol-3-phosphate acyltransferase J4N42_02165 PF02152 Dihydroneopterin aldolase J4N42_02170 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J4N42_02175 PF02673 Bacitracin resistance protein BacA J4N42_02180 PF04977 Septum formation initiator J4N42_02185 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase J4N42_02190 PF02542 YgbB family J4N42_02195 PF01142 tRNA pseudouridine synthase D (TruD) J4N42_02200 PF01975 Survival protein SurE J4N42_02210 PF01476 LysM domain J4N42_02210 PF01551 Peptidase family M23 J4N42_02215 PF04542 Sigma-70 region 2 J4N42_02215 PF04539 Sigma-70 region 3 J4N42_02215 PF04545 Sigma-70, region 4 J4N42_02215 PF00140 Sigma-70 factor, region 1.2 J4N42_02220 PF01624 MutS domain I J4N42_02220 PF05188 MutS domain II J4N42_02220 PF05192 MutS domain III J4N42_02220 PF05190 MutS family domain IV J4N42_02220 PF00488 MutS domain V J4N42_02225 PF02464 Competence-damaged protein J4N42_02230 PF00154 recA bacterial DNA recombination protein J4N42_02235 PF02631 RecX family J4N42_02240 PF01411 tRNA synthetases class II (A) J4N42_02240 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J4N42_02240 PF02272 DHHA1 domain J4N42_02245 PF00696 Amino acid kinase family J4N42_02245 PF01842 ACT domain J4N42_02245 PF13840 ACT domain J4N42_02250 PF02599 Global regulator protein family J4N42_02295 PF04277 Oxaloacetate decarboxylase, gamma chain J4N42_02300 PF00364 Biotin-requiring enzyme J4N42_02300 PF00682 HMGL-like J4N42_02300 PF02436 Conserved carboxylase domain J4N42_02305 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit J4N42_02310 PF00107 Zinc-binding dehydrogenase J4N42_02310 PF08240 Alcohol dehydrogenase GroES-like domain J4N42_02315 PF09335 SNARE associated Golgi protein J4N42_02320 PF00675 Insulinase (Peptidase family M16) J4N42_02320 PF05193 Peptidase M16 inactive domain J4N42_02325 PF04262 Glutamate-cysteine ligase J4N42_02335 PF02664 S-Ribosylhomocysteinase (LuxS) J4N42_02340 PF00571 CBS domain J4N42_02340 PF03471 Transporter associated domain J4N42_02340 PF01595 Cyclin M transmembrane N-terminal domain J4N42_02345 PF01578 Cytochrome C assembly protein J4N42_02350 PF02978 Signal peptide binding domain J4N42_02350 PF02881 SRP54-type protein, helical bundle domain J4N42_02350 PF00448 SRP54-type protein, GTPase domain J4N42_02355 PF00886 Ribosomal protein S16 J4N42_02360 PF05239 PRC-barrel domain J4N42_02360 PF01782 RimM N-terminal domain J4N42_02365 PF01746 tRNA (Guanine-1)-methyltransferase J4N42_02370 PF01245 Ribosomal protein L19 J4N42_02375 PF01966 HD domain J4N42_02375 PF01743 Poly A polymerase head domain J4N42_02375 PF12627 Probable RNA and SrmB- binding site of polymerase A J4N42_02380 PF13401 AAA domain J4N42_02380 PF01471 Putative peptidoglycan binding domain J4N42_02390 PF08239 Bacterial SH3 domain J4N42_02395 PF01384 Phosphate transporter family J4N42_02400 PF01865 Protein of unknown function DUF47 J4N42_02405 PF01928 CYTH domain J4N42_02410 PF00027 Cyclic nucleotide-binding domain J4N42_02410 PF07885 Ion channel J4N42_02415 PF02743 Cache domain J4N42_02415 PF00672 HAMP domain J4N42_02415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_02420 PF08335 GlnD PII-uridylyltransferase J4N42_02420 PF03710 Glutamate-ammonia ligase adenylyltransferase J4N42_02425 PF00294 pfkB family carbohydrate kinase J4N42_02425 PF01467 Cytidylyltransferase-like J4N42_02430 PF02321 Outer membrane efflux protein J4N42_02435 PF00293 NUDIX domain J4N42_02440 PF06853 Protein of unknown function (DUF1249) J4N42_02445 PF00149 Calcineurin-like phosphoesterase J4N42_02450 PF05728 Uncharacterised protein family (UPF0227) J4N42_02455 PF00204 DNA gyrase B J4N42_02455 PF00986 DNA gyrase B subunit, carboxyl terminus J4N42_02455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_02455 PF01751 Toprim domain J4N42_02460 PF00521 DNA gyrase/topoisomerase IV, subunit A J4N42_02460 PF03989 DNA gyrase C-terminal domain, beta-propeller J4N42_02465 PF13180 PDZ domain J4N42_02470 PF00595 PDZ domain J4N42_02475 PF06295 Protein of unknown function (DUF1043) J4N42_02480 PF03969 AFG1-like ATPase J4N42_02485 PF00572 Ribosomal protein L13 J4N42_02490 PF00380 Ribosomal protein S9/S16 J4N42_02495 PF00355 Rieske [2Fe-2S] domain J4N42_02495 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal J4N42_02500 PF00033 Cytochrome b/b6/petB J4N42_02500 PF00032 Cytochrome b(C-terminal)/b6/petD J4N42_02505 PF02167 Cytochrome C1 family J4N42_02510 PF00043 Glutathione S-transferase, C-terminal domain J4N42_02510 PF02798 Glutathione S-transferase, N-terminal domain J4N42_02515 PF04386 Stringent starvation protein B J4N42_02520 PF04972 BON domain J4N42_02525 PF13580 SIS domain J4N42_02530 PF02021 Uncharacterised protein family UPF0102 J4N42_02535 PF04348 LppC putative lipoprotein J4N42_02540 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N42_02550 PF01795 MraW methylase family J4N42_02555 PF04999 Cell division protein FtsL J4N42_02560 PF03717 Penicillin-binding Protein dimerisation domain J4N42_02560 PF00905 Penicillin binding protein transpeptidase domain J4N42_02565 PF08245 Mur ligase middle domain J4N42_02565 PF02875 Mur ligase family, glutamate ligase domain J4N42_02565 PF01225 Mur ligase family, catalytic domain J4N42_02570 PF02875 Mur ligase family, glutamate ligase domain J4N42_02570 PF08245 Mur ligase middle domain J4N42_02570 PF01225 Mur ligase family, catalytic domain J4N42_02575 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 J4N42_02575 PF00953 Glycosyl transferase family 4 J4N42_02580 PF08245 Mur ligase middle domain J4N42_02580 PF02875 Mur ligase family, glutamate ligase domain J4N42_02585 PF01098 Cell cycle protein J4N42_02590 PF04101 Glycosyltransferase family 28 C-terminal domain J4N42_02590 PF03033 Glycosyltransferase family 28 N-terminal domain J4N42_02595 PF08245 Mur ligase middle domain J4N42_02595 PF02875 Mur ligase family, glutamate ligase domain J4N42_02595 PF01225 Mur ligase family, catalytic domain J4N42_02600 PF08478 POTRA domain, FtsQ-type J4N42_02600 PF03799 Cell division protein FtsQ J4N42_02605 PF02491 SHS2 domain inserted in FTSA J4N42_02610 PF12327 FtsZ family, C-terminal domain J4N42_02610 PF00091 Tubulin/FtsZ family, GTPase domain J4N42_02615 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase J4N42_02625 PF02810 SEC-C motif J4N42_02625 PF07517 SecA DEAD-like domain J4N42_02625 PF01043 SecA preprotein cross-linking domain J4N42_02625 PF07516 SecA Wing and Scaffold domain J4N42_02630 PF00293 NUDIX domain J4N42_02635 PF05173 Dihydrodipicolinate reductase, C-terminus J4N42_02635 PF01113 Dihydrodipicolinate reductase, N-terminus J4N42_02640 PF00117 Glutamine amidotransferase class-I J4N42_02640 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain J4N42_02645 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J4N42_02645 PF02142 MGS-like domain J4N42_02645 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain J4N42_02650 PF01925 Sulfite exporter TauE/SafE J4N42_02655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_02655 PF03466 LysR substrate binding domain J4N42_02660 PF03458 UPF0126 domain J4N42_02665 PF01497 Periplasmic binding protein J4N42_02670 PF17113 Regulatory signalling modulator protein AmpE J4N42_02670 PF03186 CobD/Cbib protein J4N42_02675 PF01048 Phosphorylase superfamily J4N42_02680 PF00312 Ribosomal protein S15 J4N42_02685 PF01138 3' exoribonuclease family, domain 1 J4N42_02685 PF03725 3' exoribonuclease family, domain 2 J4N42_02685 PF00575 S1 RNA binding domain J4N42_02685 PF00013 KH domain J4N42_02685 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain J4N42_02690 PF07719 Tetratricopeptide repeat J4N42_02690 PF13181 Tetratricopeptide repeat J4N42_02705 PF01136 Peptidase family U32 J4N42_02710 PF01136 Peptidase family U32 J4N42_02715 PF00990 Diguanylate cyclase, GGDEF domain J4N42_02715 PF03707 Bacterial signalling protein N terminal repeat J4N42_02715 PF00563 EAL domain J4N42_02720 PF02036 SCP-2 sterol transfer family J4N42_02725 PF13508 Acetyltransferase (GNAT) domain J4N42_02735 PF00583 Acetyltransferase (GNAT) family J4N42_02740 PF00563 EAL domain J4N42_02740 PF03707 Bacterial signalling protein N terminal repeat J4N42_02740 PF00990 Diguanylate cyclase, GGDEF domain J4N42_02745 PF00009 Elongation factor Tu GTP binding domain J4N42_02745 PF03144 Elongation factor Tu domain 2 J4N42_02745 PF16658 Class II release factor RF3, C-terminal domain J4N42_02750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_02750 PF08447 PAS fold J4N42_02755 PF00270 DEAD/DEAH box helicase J4N42_02755 PF00271 Helicase conserved C-terminal domain J4N42_02760 PF05175 Methyltransferase small domain J4N42_02765 PF05525 Branched-chain amino acid transport protein J4N42_02775 PF01336 OB-fold nucleic acid binding domain J4N42_02775 PF00152 tRNA synthetases class II (D, K and N) J4N42_02780 PF02954 Bacterial regulatory protein, Fis family J4N42_02780 PF00072 Response regulator receiver domain J4N42_02780 PF00158 Sigma-54 interaction domain J4N42_02790 PF00248 Aldo/keto reductase family J4N42_02800 PF02976 DNA mismatch repair enzyme MutH J4N42_02805 PF00293 NUDIX domain J4N42_02810 PF00391 PEP-utilising enzyme, mobile domain J4N42_02810 PF02896 PEP-utilising enzyme, TIM barrel domain J4N42_02810 PF01590 GAF domain J4N42_02810 PF05524 PEP-utilising enzyme, N-terminal J4N42_02815 PF01925 Sulfite exporter TauE/SafE J4N42_02820 PF01790 Prolipoprotein diacylglyceryl transferase J4N42_02825 PF00303 Thymidylate synthase J4N42_02830 PF02690 Na+/Pi-cotransporter J4N42_02835 PF03466 LysR substrate binding domain J4N42_02835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_02840 PF01022 Bacterial regulatory protein, arsR family J4N42_02845 PF01649 Ribosomal protein S20 J4N42_02850 PF03023 Lipid II flippase MurJ J4N42_02855 PF06574 FAD synthetase J4N42_02855 PF01687 Riboflavin kinase J4N42_02860 PF08264 Anticodon-binding domain of tRNA J4N42_02860 PF00133 tRNA synthetases class I (I, L, M and V) J4N42_02860 PF06827 Zinc finger found in FPG and IleRS J4N42_02865 PF01252 Signal peptidase (SPase) II J4N42_02870 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N42_02875 PF02401 LytB protein J4N42_02880 PF02554 Carbon starvation protein CstA J4N42_02890 PF13580 SIS domain J4N42_02895 PF03702 Anhydro-N-acetylmuramic acid kinase J4N42_02900 PF00933 Glycosyl hydrolase family 3 N terminal domain J4N42_02905 PF04397 LytTr DNA-binding domain J4N42_02905 PF00072 Response regulator receiver domain J4N42_02910 PF07694 5TMR of 5TMR-LYT J4N42_02910 PF06580 Histidine kinase J4N42_02915 PF00793 DAHP synthetase I family J4N42_02920 PF01817 Chorismate mutase type II J4N42_02920 PF02153 Prephenate dehydrogenase J4N42_02925 PF04225 Opacity-associated protein A LysM-like domain J4N42_02925 PF01551 Peptidase family M23 J4N42_02930 PF07238 PilZ domain J4N42_02935 PF12848 ABC transporter J4N42_02935 PF00005 ABC transporter J4N42_02940 PF14718 Soluble lytic murein transglycosylase L domain J4N42_02940 PF01464 Transglycosylase SLT domain J4N42_02945 PF01371 Trp repressor protein J4N42_02950 PF01931 Protein of unknown function DUF84 J4N42_02955 PF00563 EAL domain J4N42_02955 PF00990 Diguanylate cyclase, GGDEF domain J4N42_02960 PF13416 Bacterial extracellular solute-binding protein J4N42_02965 PF01817 Chorismate mutase type II J4N42_02965 PF00800 Prephenate dehydratase J4N42_02970 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein J4N42_02975 PF01464 Transglycosylase SLT domain J4N42_02980 PF13525 Outer membrane lipoprotein J4N42_02985 PF00849 RNA pseudouridylate synthase J4N42_02985 PF01479 S4 domain J4N42_02990 PF02578 Multi-copper polyphenol oxidoreductase laccase J4N42_02995 PF07724 AAA domain (Cdc48 subfamily) J4N42_02995 PF00004 ATPase family associated with various cellular activities (AAA) J4N42_02995 PF10431 C-terminal, D2-small domain, of ClpB protein J4N42_02995 PF02861 Clp amino terminal domain, pathogenicity island component J4N42_02995 PF17871 AAA lid domain J4N42_03035 PF00459 Inositol monophosphatase family J4N42_03040 PF00588 SpoU rRNA Methylase family J4N42_03045 PF02082 Transcriptional regulator J4N42_03050 PF00266 Aminotransferase class-V J4N42_03055 PF01592 NifU-like N terminal domain J4N42_03060 PF01521 Iron-sulphur cluster biosynthesis J4N42_03065 PF00226 DnaJ domain J4N42_03065 PF07743 HSCB C-terminal oligomerisation domain J4N42_03070 PF00012 Hsp70 protein J4N42_03075 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N42_03080 PF04384 Iron-sulphur cluster assembly J4N42_03085 PF12404 Peptidase J4N42_03085 PF00883 Cytosol aminopeptidase family, catalytic domain J4N42_03090 PF00334 Nucleoside diphosphate kinase J4N42_03095 PF04055 Radical SAM superfamily J4N42_03100 PF13464 Domain of unknown function (DUF4115) J4N42_03105 PF04551 GcpE protein J4N42_03110 PF03129 Anticodon binding domain J4N42_03110 PF13393 Histidyl-tRNA synthetase J4N42_03115 PF09976 Tetratricopeptide repeat-like domain J4N42_03120 PF13360 PQQ-like domain J4N42_03125 PF01926 50S ribosome-binding GTPase J4N42_03125 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal J4N42_03140 PF02601 Exonuclease VII, large subunit J4N42_03140 PF13742 OB-fold nucleic acid binding domain J4N42_03145 PF00571 CBS domain J4N42_03145 PF00478 IMP dehydrogenase / GMP reductase domain J4N42_03150 PF00117 Glutamine amidotransferase class-I J4N42_03150 PF00958 GMP synthase C terminal domain J4N42_03150 PF02540 NAD synthase J4N42_03155 PF00704 Glycosyl hydrolases family 18 J4N42_03155 PF06483 Chitinase C J4N42_03160 PF01184 GPR1/FUN34/yaaH family J4N42_03165 PF01235 Sodium:alanine symporter family J4N42_03170 PF01266 FAD dependent oxidoreductase J4N42_03175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_03175 PF03466 LysR substrate binding domain J4N42_03180 PF07885 Ion channel J4N42_03190 PF07478 D-ala D-ala ligase C-terminus J4N42_03190 PF01820 D-ala D-ala ligase N-terminus J4N42_03225 PF00571 CBS domain J4N42_03225 PF03471 Transporter associated domain J4N42_03225 PF01595 Cyclin M transmembrane N-terminal domain J4N42_03230 PF00155 Aminotransferase class I and II J4N42_03235 PF00082 Subtilase family J4N42_03240 PF01553 Acyltransferase J4N42_03275 PF01047 MarR family J4N42_03290 PF01668 SmpB protein J4N42_03295 PF03364 Polyketide cyclase / dehydrase and lipid transport J4N42_03300 PF03658 RnfH family Ubiquitin J4N42_03310 PF04355 SmpA / OmlA family J4N42_03315 PF02463 RecF/RecN/SMC N terminal domain J4N42_03320 PF01513 ATP-NAD kinase J4N42_03325 PF01025 GrpE J4N42_03330 PF00375 Sodium:dicarboxylate symporter family J4N42_03335 PF00012 Hsp70 protein J4N42_03340 PF00226 DnaJ domain J4N42_03340 PF01556 DnaJ C terminal domain J4N42_03340 PF00684 DnaJ central domain J4N42_03350 PF07963 Prokaryotic N-terminal methylation motif J4N42_03350 PF00114 Pilin (bacterial filament) J4N42_03375 PF03806 AbgT putative transporter family J4N42_03385 PF14437 MafB19-like deaminase J4N42_03390 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N42_03390 PF01464 Transglycosylase SLT domain J4N42_03395 PF02769 AIR synthase related protein, C-terminal domain J4N42_03395 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain J4N42_03395 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal J4N42_03410 PF06786 Uncharacterised protein family (UPF0253) J4N42_03420 PF03129 Anticodon binding domain J4N42_03420 PF04073 Aminoacyl-tRNA editing domain J4N42_03420 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J4N42_03425 PF18389 TrmO C-terminal domain J4N42_03425 PF01980 tRNA-methyltransferase O J4N42_03430 PF01197 Ribosomal protein L31 J4N42_03435 PF00444 Ribosomal protein L36 J4N42_03440 PF03806 AbgT putative transporter family J4N42_03455 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 J4N42_03465 PF13302 Acetyltransferase (GNAT) domain J4N42_03480 PF04287 tRNA pseudouridine synthase C J4N42_03480 PF00849 RNA pseudouridylate synthase J4N42_03485 PF00849 RNA pseudouridylate synthase J4N42_03490 PF13292 1-deoxy-D-xylulose-5-phosphate synthase J4N42_03490 PF02779 Transketolase, pyrimidine binding domain J4N42_03490 PF02780 Transketolase, C-terminal domain J4N42_03495 PF00348 Polyprenyl synthetase J4N42_03500 PF02609 Exonuclease VII small subunit J4N42_03505 PF01618 MotA/TolQ/ExbB proton channel family J4N42_03510 PF00691 OmpA family J4N42_03510 PF13677 Membrane MotB of proton-channel complex MotA/MotB J4N42_03515 PF02926 THUMP domain J4N42_03515 PF02568 Thiamine biosynthesis protein (ThiI) J4N42_03520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_03520 PF03466 LysR substrate binding domain J4N42_03530 PF04241 Protein of unknown function (DUF423) J4N42_03535 PF01728 FtsJ-like methyltransferase J4N42_03535 PF18125 RlmM ferredoxin-like domain J4N42_03540 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J4N42_03540 PF01367 5'-3' exonuclease, C-terminal SAM fold J4N42_03545 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases J4N42_03545 PF03641 Possible lysine decarboxylase J4N42_03545 PF11892 Domain of unknown function (DUF3412) J4N42_03550 PF00990 Diguanylate cyclase, GGDEF domain J4N42_03560 PF14489 QueF-like protein J4N42_03560 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term J4N42_03565 PF07348 Syd protein (SUKH-2) J4N42_03570 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) J4N42_03575 PF03180 NLPA lipoprotein J4N42_03580 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_03585 PF00005 ABC transporter J4N42_03585 PF09383 NIL domain J4N42_03600 PF00356 Bacterial regulatory proteins, lacI family J4N42_03605 PF02378 Phosphotransferase system, EIIC J4N42_03605 PF00367 phosphotransferase system, EIIB J4N42_03610 PF16657 Maltogenic Amylase, C-terminal domain J4N42_03610 PF00128 Alpha amylase, catalytic domain J4N42_03635 PF13533 Biotin-lipoyl like J4N42_03640 PF00873 AcrB/AcrD/AcrF family J4N42_03660 PF13519 von Willebrand factor type A domain J4N42_03670 PF17863 AAA lid domain J4N42_03670 PF07726 ATPase family associated with various cellular activities (AAA) J4N42_03685 PF00464 Serine hydroxymethyltransferase J4N42_03695 PF04055 Radical SAM superfamily J4N42_03695 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family J4N42_03700 PF03099 Biotin/lipoate A/B protein ligase family J4N42_03705 PF04359 Protein of unknown function (DUF493) J4N42_03710 PF07943 Penicillin-binding protein 5, C-terminal domain J4N42_03710 PF00768 D-alanyl-D-alanine carboxypeptidase J4N42_03715 PF03330 Lytic transglycolase J4N42_03715 PF05036 Sporulation related domain J4N42_03720 PF01098 Cell cycle protein J4N42_03725 PF00905 Penicillin binding protein transpeptidase domain J4N42_03725 PF03717 Penicillin-binding Protein dimerisation domain J4N42_03730 PF02590 Predicted SPOUT methyltransferase J4N42_03740 PF14840 Processivity clamp loader gamma complex DNA pol III C-term J4N42_03740 PF06144 DNA polymerase III, delta subunit J4N42_03745 PF04390 Lipopolysaccharide-assembly J4N42_03750 PF08264 Anticodon-binding domain of tRNA J4N42_03750 PF00133 tRNA synthetases class I (I, L, M and V) J4N42_03750 PF13603 Leucyl-tRNA synthetase, Domain 2 J4N42_03755 PF07295 Zinc-ribbon containing domain J4N42_03760 PF00795 Carbon-nitrogen hydrolase J4N42_03765 PF00571 CBS domain J4N42_03765 PF03471 Transporter associated domain J4N42_03770 PF02130 Uncharacterized protein family UPF0054 J4N42_03775 PF02562 PhoH-like protein J4N42_03780 PF00919 Uncharacterized protein family UPF0004 J4N42_03780 PF04055 Radical SAM superfamily J4N42_03780 PF01938 TRAM domain J4N42_03785 PF01494 FAD binding domain J4N42_03790 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 J4N42_03795 PF02896 PEP-utilising enzyme, TIM barrel domain J4N42_03795 PF00391 PEP-utilising enzyme, mobile domain J4N42_03795 PF05524 PEP-utilising enzyme, N-terminal J4N42_03800 PF00381 PTS HPr component phosphorylation site J4N42_03805 PF00291 Pyridoxal-phosphate dependent enzyme J4N42_03815 PF04354 ZipA, C-terminal FtsZ-binding domain J4N42_03820 PF01653 NAD-dependent DNA ligase adenylation domain J4N42_03820 PF12826 Helix-hairpin-helix motif J4N42_03820 PF03119 NAD-dependent DNA ligase C4 zinc finger domain J4N42_03820 PF00533 BRCA1 C Terminus (BRCT) domain J4N42_03820 PF03120 NAD-dependent DNA ligase OB-fold domain J4N42_03825 PF13609 Gram-negative porin J4N42_03830 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) J4N42_03845 PF16200 C-terminal region of band_7 J4N42_03845 PF01145 SPFH domain / Band 7 family J4N42_03850 PF00085 Thioredoxin J4N42_03855 PF00106 short chain dehydrogenase J4N42_03860 PF08338 Domain of unknown function (DUF1731) J4N42_03860 PF01370 NAD dependent epimerase/dehydratase family J4N42_03865 PF07556 Protein of unknown function (DUF1538) J4N42_03870 PF07556 Protein of unknown function (DUF1538) J4N42_03885 PF12850 Calcineurin-like phosphoesterase superfamily domain J4N42_03900 PF17323 Trans-membrane regulatory protein ToxS J4N42_03905 PF00486 Transcriptional regulatory protein, C terminal J4N42_03910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_03910 PF00183 Hsp90 protein J4N42_03915 PF05191 Adenylate kinase, active site lid J4N42_03920 PF00762 Ferrochelatase J4N42_03925 PF00854 POT family J4N42_03935 PF00733 Asparagine synthase J4N42_03935 PF13537 Glutamine amidotransferase domain J4N42_03940 PF00999 Sodium/hydrogen exchanger family J4N42_03940 PF02254 TrkA-N domain J4N42_03945 PF01047 MarR family J4N42_03945 PF00480 ROK family J4N42_03950 PF01979 Amidohydrolase family J4N42_03955 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 J4N42_03955 PF00367 phosphotransferase system, EIIB J4N42_03955 PF02378 Phosphotransferase system, EIIC J4N42_03960 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain J4N42_03960 PF00749 tRNA synthetases class I (E and Q), catalytic domain J4N42_03965 PF01475 Ferric uptake regulator family J4N42_03975 PF00258 Flavodoxin J4N42_03985 PF12697 Alpha/beta hydrolase family J4N42_03990 PF17206 SeqA protein N-terminal domain J4N42_03990 PF03925 SeqA protein C-terminal domain J4N42_03995 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J4N42_03995 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J4N42_03995 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J4N42_03995 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J4N42_04005 PF01784 NIF3 (NGG1p interacting factor 3) J4N42_04010 PF00285 Citrate synthase, C-terminal domain J4N42_04015 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit J4N42_04020 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit J4N42_04025 PF02910 Fumarate reductase flavoprotein C-term J4N42_04025 PF00890 FAD binding domain J4N42_04030 PF13085 2Fe-2S iron-sulfur cluster binding domain J4N42_04035 PF16078 2-oxoglutarate dehydrogenase N-terminus J4N42_04035 PF00676 Dehydrogenase E1 component J4N42_04035 PF16870 2-oxoglutarate dehydrogenase C-terminal J4N42_04035 PF02779 Transketolase, pyrimidine binding domain J4N42_04040 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J4N42_04040 PF00364 Biotin-requiring enzyme J4N42_04040 PF02817 e3 binding domain J4N42_04045 PF08442 ATP-grasp domain J4N42_04045 PF00549 CoA-ligase J4N42_04050 PF02629 CoA binding domain J4N42_04050 PF00549 CoA-ligase J4N42_04055 PF13726 Na+-H+ antiporter family J4N42_04055 PF03553 Na+/H+ antiporter family J4N42_04060 PF00929 Exonuclease J4N42_04065 PF18393 MotY N-terminal domain J4N42_04065 PF00691 OmpA family J4N42_04070 PF10952 Protein of unknown function (DUF2753) J4N42_04075 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N42_04080 PF10576 Iron-sulfur binding domain of endonuclease III J4N42_04080 PF00633 Helix-hairpin-helix motif J4N42_04080 PF00730 HhH-GPD superfamily base excision DNA repair protein J4N42_04085 PF02508 Rnf-Nqr subunit, membrane protein J4N42_04090 PF04205 FMN-binding domain J4N42_04095 PF03116 NQR2, RnfD, RnfE family J4N42_04100 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit J4N42_04100 PF10531 SLBB domain J4N42_04100 PF12838 4Fe-4S dicluster domain J4N42_04100 PF13375 RnfC Barrel sandwich hybrid domain J4N42_04105 PF04060 Putative Fe-S cluster J4N42_04110 PF02508 Rnf-Nqr subunit, membrane protein J4N42_04120 PF12344 Ultra-violet resistance protein B J4N42_04120 PF17757 UvrB interaction domain J4N42_04120 PF00271 Helicase conserved C-terminal domain J4N42_04120 PF02151 UvrB/uvrC motif J4N42_04120 PF04851 Type III restriction enzyme, res subunit J4N42_04125 PF02954 Bacterial regulatory protein, Fis family J4N42_04125 PF00072 Response regulator receiver domain J4N42_04125 PF00158 Sigma-54 interaction domain J4N42_04130 PF01627 Hpt domain J4N42_04135 PF01933 Uncharacterised protein family UPF0052 J4N42_04140 PF06463 Molybdenum Cofactor Synthesis C J4N42_04140 PF04055 Radical SAM superfamily J4N42_04145 PF00994 Probable molybdopterin binding domain J4N42_04150 PF01967 MoaC family J4N42_04155 PF02597 ThiS family J4N42_04160 PF02391 MoaE protein J4N42_04165 PF00990 Diguanylate cyclase, GGDEF domain J4N42_04165 PF08448 PAS fold J4N42_04170 PF01743 Poly A polymerase head domain J4N42_04170 PF02272 DHHA1 domain J4N42_04170 PF01368 DHH family J4N42_04170 PF00571 CBS domain J4N42_04175 PF01554 MatE J4N42_04180 PF00403 Heavy-metal-associated domain J4N42_04185 PF01048 Phosphorylase superfamily J4N42_04200 PF09334 tRNA synthetases class I (M) J4N42_04200 PF01588 Putative tRNA binding domain J4N42_04205 PF10609 NUBPL iron-transfer P-loop NTPase J4N42_04210 PF00485 Phosphoribulokinase / Uridine kinase family J4N42_04215 PF05170 AsmA family J4N42_04220 PF12557 Cob(I)alamin adenosyltransferase N terminal J4N42_04220 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP J4N42_04225 PF01451 Low molecular weight phosphotyrosine protein phosphatase J4N42_04240 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain J4N42_04240 PF02777 Iron/manganese superoxide dismutases, C-terminal domain J4N42_04245 PF00462 Glutaredoxin J4N42_04250 PF01751 Toprim domain J4N42_04250 PF01131 DNA topoisomerase J4N42_04260 PF01161 Phosphatidylethanolamine-binding protein J4N42_04265 PF00106 short chain dehydrogenase J4N42_04270 PF00850 Histone deacetylase domain J4N42_04280 PF00892 EamA-like transporter family J4N42_04295 PF00072 Response regulator receiver domain J4N42_04295 PF00486 Transcriptional regulatory protein, C terminal J4N42_04300 PF04116 Fatty acid hydroxylase superfamily J4N42_04315 PF11893 Domain of unknown function (DUF3413) J4N42_04315 PF00884 Sulfatase J4N42_04320 PF07208 Protein of unknown function (DUF1414) J4N42_04325 PF04245 37-kD nucleoid-associated bacterial protein J4N42_04340 PF03553 Na+/H+ antiporter family J4N42_04345 PF01118 Semialdehyde dehydrogenase, NAD binding domain J4N42_04345 PF02774 Semialdehyde dehydrogenase, dimerisation domain J4N42_04350 PF07963 Prokaryotic N-terminal methylation motif J4N42_04355 PF00027 Cyclic nucleotide-binding domain J4N42_04355 PF00520 Ion transport protein J4N42_04360 PF01914 MarC family integral membrane protein J4N42_04365 PF00171 Aldehyde dehydrogenase family J4N42_04365 PF00465 Iron-containing alcohol dehydrogenase J4N42_04375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_04375 PF00672 HAMP domain J4N42_04380 PF00916 Sulfate permease family J4N42_04380 PF01740 STAS domain J4N42_04385 PF12111 Polyribonucleotide phosphorylase C terminal J4N42_04385 PF10150 Ribonuclease E/G family J4N42_04385 PF00575 S1 RNA binding domain J4N42_04390 PF00849 RNA pseudouridylate synthase J4N42_04390 PF01479 S4 domain J4N42_04395 PF02545 Maf-like protein J4N42_04400 PF02620 Large ribosomal RNA subunit accumulation protein YceD J4N42_04405 PF01783 Ribosomal L32p protein family J4N42_04410 PF02504 Fatty acid synthesis protein J4N42_04415 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J4N42_04415 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J4N42_04420 PF00698 Acyl transferase domain J4N42_04430 PF00550 Phosphopantetheine attachment site J4N42_04435 PF02801 Beta-ketoacyl synthase, C-terminal domain J4N42_04435 PF00109 Beta-ketoacyl synthase, N-terminal domain J4N42_04440 PF01063 Amino-transferase class IV J4N42_04445 PF02618 YceG-like family J4N42_04450 PF02223 Thymidylate kinase J4N42_04455 PF09115 DNA polymerase III, delta subunit, C terminal J4N42_04460 PF01026 TatD related DNase J4N42_04465 PF00367 phosphotransferase system, EIIB J4N42_04465 PF02378 Phosphotransferase system, EIIC J4N42_04485 PF01734 Patatin-like phospholipase J4N42_04490 PF02887 Pyruvate kinase, alpha/beta domain J4N42_04490 PF00224 Pyruvate kinase, barrel domain J4N42_04495 PF00480 ROK family J4N42_04500 PF01584 CheW-like domain J4N42_04500 PF00072 Response regulator receiver domain J4N42_04505 PF02811 PHP domain J4N42_04505 PF01336 OB-fold nucleic acid binding domain J4N42_04505 PF14579 Helix-hairpin-helix motif J4N42_04505 PF07733 Bacterial DNA polymerase III alpha NTPase domain J4N42_04505 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J4N42_04520 PF00106 short chain dehydrogenase J4N42_04525 PF01343 Peptidase family S49 J4N42_04525 PF08496 Peptidase family S49 N-terminal J4N42_04540 PF13286 Phosphohydrolase-associated domain J4N42_04540 PF01966 HD domain J4N42_04545 PF00990 Diguanylate cyclase, GGDEF domain J4N42_04545 PF00563 EAL domain J4N42_04545 PF03707 Bacterial signalling protein N terminal repeat J4N42_04555 PF00155 Aminotransferase class I and II J4N42_04560 PF00425 chorismate binding enzyme J4N42_04565 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J4N42_04565 PF16582 Middle domain of thiamine pyrophosphate J4N42_04565 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J4N42_04570 PF12697 Alpha/beta hydrolase family J4N42_04575 PF00378 Enoyl-CoA hydratase/isomerase J4N42_04580 PF13378 Enolase C-terminal domain-like J4N42_04585 PF00501 AMP-binding enzyme J4N42_04585 PF13193 AMP-binding enzyme C-terminal domain J4N42_04590 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 J4N42_04590 PF00367 phosphotransferase system, EIIB J4N42_04590 PF02378 Phosphotransferase system, EIIC J4N42_04595 PF03466 LysR substrate binding domain J4N42_04595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_04605 PF03601 Conserved hypothetical protein 698 J4N42_04610 PF07690 Major Facilitator Superfamily J4N42_04630 PF00230 Major intrinsic protein J4N42_04640 PF03692 Putative zinc- or iron-chelating domain J4N42_04645 PF03692 Putative zinc- or iron-chelating domain J4N42_04665 PF13847 Methyltransferase domain J4N42_04670 PF01263 Aldose 1-epimerase J4N42_04675 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J4N42_04675 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J4N42_04680 PF01641 SelR domain J4N42_04690 PF07023 Protein of unknown function (DUF1315) J4N42_04695 PF00710 Asparaginase, N-terminal J4N42_04695 PF17763 Glutaminase/Asparaginase C-terminal domain J4N42_04700 PF01343 Peptidase family S49 J4N42_04705 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J4N42_04705 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N42_04710 PF01842 ACT domain J4N42_04710 PF00551 Formyl transferase J4N42_04720 PF04851 Type III restriction enzyme, res subunit J4N42_04720 PF13307 Helicase C-terminal domain J4N42_04725 PF00814 Glycoprotease family J4N42_04740 PF00561 alpha/beta hydrolase fold J4N42_04745 PF13193 AMP-binding enzyme C-terminal domain J4N42_04745 PF00501 AMP-binding enzyme J4N42_04750 PF00570 HRDC domain J4N42_04750 PF01612 3'-5' exonuclease J4N42_04760 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J4N42_04765 PF05209 Septum formation inhibitor MinC, N-terminal domain J4N42_04765 PF03775 Septum formation inhibitor MinC, C-terminal domain J4N42_04770 PF05166 YcgL domain J4N42_04775 PF13406 Transglycosylase SLT domain J4N42_04780 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain J4N42_04780 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain J4N42_04790 PF02028 BCCT, betaine/carnitine/choline family transporter J4N42_04795 PF00072 Response regulator receiver domain J4N42_04795 PF01627 Hpt domain J4N42_04795 PF00512 His Kinase A (phospho-acceptor) domain J4N42_04795 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J4N42_04795 PF00672 HAMP domain J4N42_04795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_04805 PF02696 Uncharacterized ACR, YdiU/UPF0061 family J4N42_04810 PF00072 Response regulator receiver domain J4N42_04810 PF00486 Transcriptional regulatory protein, C terminal J4N42_04815 PF00672 HAMP domain J4N42_04815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_04815 PF00512 His Kinase A (phospho-acceptor) domain J4N42_04820 PF01547 Bacterial extracellular solute-binding protein J4N42_04825 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_04830 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_04835 PF00005 ABC transporter J4N42_04835 PF03459 TOBE domain J4N42_04835 PF17912 MalK OB fold domain J4N42_04845 PF03480 Bacterial extracellular solute-binding protein, family 7 J4N42_04850 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component J4N42_04855 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J4N42_04870 PF00158 Sigma-54 interaction domain J4N42_04870 PF00072 Response regulator receiver domain J4N42_04870 PF02954 Bacterial regulatory protein, Fis family J4N42_04875 PF02743 Cache domain J4N42_04875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_04875 PF00512 His Kinase A (phospho-acceptor) domain J4N42_04885 PF00574 Clp protease J4N42_04890 PF07724 AAA domain (Cdc48 subfamily) J4N42_04890 PF10431 C-terminal, D2-small domain, of ClpB protein J4N42_04890 PF06689 ClpX C4-type zinc finger J4N42_04895 PF02190 ATP-dependent protease La (LON) substrate-binding domain J4N42_04895 PF00004 ATPase family associated with various cellular activities (AAA) J4N42_04895 PF05362 Lon protease (S16) C-terminal proteolytic domain J4N42_04900 PF00216 Bacterial DNA-binding protein J4N42_04905 PF13145 PPIC-type PPIASE domain J4N42_04915 PF02224 Cytidylate kinase J4N42_04920 PF00575 S1 RNA binding domain J4N42_04925 PF00216 Bacterial DNA-binding protein J4N42_04930 PF06305 Lipopolysaccharide assembly protein A domain J4N42_04935 PF18073 Rubredoxin metal binding domain J4N42_04940 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family J4N42_04950 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) J4N42_04960 PF03466 LysR substrate binding domain J4N42_04960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_04975 PF02653 Branched-chain amino acid transport system / permease component J4N42_04980 PF00005 ABC transporter J4N42_04985 PF00990 Diguanylate cyclase, GGDEF domain J4N42_04985 PF00072 Response regulator receiver domain J4N42_04990 PF01207 Dihydrouridine synthase (Dus) J4N42_04995 PF07516 SecA Wing and Scaffold domain J4N42_04995 PF01043 SecA preprotein cross-linking domain J4N42_04995 PF07517 SecA DEAD-like domain J4N42_04995 PF02810 SEC-C motif J4N42_05000 PF03548 Outer membrane lipoprotein carrier protein LolA J4N42_05005 PF16193 AAA C-terminal domain J4N42_05005 PF00004 ATPase family associated with various cellular activities (AAA) J4N42_05005 PF12002 MgsA AAA+ ATPase C terminal J4N42_05010 PF02403 Seryl-tRNA synthetase N-terminal domain J4N42_05010 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J4N42_05015 PF02810 SEC-C motif J4N42_05020 PF08668 HDOD domain J4N42_05020 PF00563 EAL domain J4N42_05025 PF00149 Calcineurin-like phosphoesterase J4N42_05030 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J4N42_05035 PF09190 DALR domain J4N42_05035 PF01406 tRNA synthetases class I (C) catalytic domain J4N42_05040 PF00265 Thymidine kinase J4N42_05045 PF01176 Translation initiation factor 1A / IF-1 J4N42_05050 PF04376 Arginine-tRNA-protein transferase, N terminus J4N42_05050 PF04377 Arginine-tRNA-protein transferase, C terminus J4N42_05055 PF03588 Leucyl/phenylalanyl-tRNA protein transferase J4N42_05065 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J4N42_05070 PF10692 Protein of unknown function (DUF2498) J4N42_05075 PF08272 Topoisomerase I zinc-ribbon-like J4N42_05075 PF01131 DNA topoisomerase J4N42_05075 PF01751 Toprim domain J4N42_05075 PF01396 Topoisomerase DNA binding C4 zinc finger J4N42_05085 PF00483 Nucleotidyl transferase J4N42_05090 PF08323 Starch synthase catalytic domain J4N42_05090 PF00534 Glycosyl transferases group 1 J4N42_05110 PF04993 TfoX N-terminal domain J4N42_05110 PF04994 TfoX C-terminal domain J4N42_05115 PF00356 Bacterial regulatory proteins, lacI family J4N42_05120 PF02613 Nitrate reductase delta subunit J4N42_05125 PF00486 Transcriptional regulatory protein, C terminal J4N42_05125 PF00072 Response regulator receiver domain J4N42_05130 PF02698 DUF218 domain J4N42_05135 PF13847 Methyltransferase domain J4N42_05140 PF03882 MukF winged-helix domain J4N42_05140 PF17192 MukF middle domain J4N42_05140 PF17193 MukF C-terminal domain J4N42_05145 PF04288 MukE-like family J4N42_05150 PF16330 MukB hinge domain J4N42_05150 PF04310 MukB N-terminal J4N42_05155 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term J4N42_05155 PF12833 Helix-turn-helix domain J4N42_05160 PF00171 Aldehyde dehydrogenase family J4N42_05165 PF05199 GMC oxidoreductase J4N42_05165 PF00732 GMC oxidoreductase J4N42_05180 PF18030 RimK PreATP-grasp domain J4N42_05180 PF08443 RimK-like ATP-grasp domain J4N42_05185 PF08003 Protein of unknown function (DUF1698) J4N42_05190 PF13649 Methyltransferase domain J4N42_05195 PF01904 Protein of unknown function DUF72 J4N42_05200 PF01336 OB-fold nucleic acid binding domain J4N42_05200 PF00152 tRNA synthetases class II (D, K and N) J4N42_05200 PF02938 GAD domain J4N42_05205 PF02075 Crossover junction endodeoxyribonuclease RuvC J4N42_05210 PF02203 Tar ligand binding domain homologue J4N42_05210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_05210 PF00672 HAMP domain J4N42_05215 PF01330 RuvA N terminal domain J4N42_05215 PF07499 RuvA, C-terminal domain J4N42_05220 PF05491 RuvB C-terminal winged helix domain J4N42_05220 PF17864 RuvB AAA lid domain J4N42_05220 PF05496 Holliday junction DNA helicase RuvB P-loop domain J4N42_05225 PF01654 Cytochrome bd terminal oxidase subunit I J4N42_05230 PF02322 Cytochrome bd terminal oxidase subunit II J4N42_05235 PF08173 Membrane bound YbgT-like protein J4N42_05245 PF03061 Thioesterase superfamily J4N42_05250 PF01618 MotA/TolQ/ExbB proton channel family J4N42_05255 PF02472 Biopolymer transport protein ExbD/TolR J4N42_05265 PF04052 TolB amino-terminal domain J4N42_05265 PF07676 WD40-like Beta Propeller Repeat J4N42_05270 PF00691 OmpA family J4N42_05275 PF13174 Tetratricopeptide repeat J4N42_05275 PF16331 TolA binding protein trimerisation J4N42_05280 PF02445 Quinolinate synthetase A protein J4N42_05285 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading J4N42_05285 PF18416 N-acetylglucosamine binding protein domain 2 J4N42_05300 PF00512 His Kinase A (phospho-acceptor) domain J4N42_05300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_05300 PF09308 LuxQ, periplasmic J4N42_05300 PF00072 Response regulator receiver domain J4N42_05305 PF06610 L-alanine exporter J4N42_05355 PF01580 FtsK/SpoIIIE family J4N42_05355 PF09397 Ftsk gamma domain J4N42_05355 PF17854 FtsK alpha domain J4N42_05355 PF13491 4TM region of DNA translocase FtsK/SpoIIIE J4N42_05360 PF00266 Aminotransferase class-V J4N42_05385 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain J4N42_05385 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J4N42_05390 PF01202 Shikimate kinase J4N42_05395 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component J4N42_05395 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J4N42_05405 PF03480 Bacterial extracellular solute-binding protein, family 7 J4N42_05415 PF01238 Phosphomannose isomerase type I J4N42_05420 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N42_05420 PF02378 Phosphotransferase system, EIIC J4N42_05420 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N42_05425 PF12833 Helix-turn-helix domain J4N42_05435 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N42_05455 PF00563 EAL domain J4N42_05455 PF00990 Diguanylate cyclase, GGDEF domain J4N42_05455 PF03707 Bacterial signalling protein N terminal repeat J4N42_05460 PF00672 HAMP domain J4N42_05460 PF00512 His Kinase A (phospho-acceptor) domain J4N42_05460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_05465 PF00486 Transcriptional regulatory protein, C terminal J4N42_05465 PF00072 Response regulator receiver domain J4N42_05470 PF00535 Glycosyl transferase family 2 J4N42_05475 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase J4N42_05485 PF16295 Tetracyclin repressor-like, C-terminal domain J4N42_05485 PF00440 Bacterial regulatory proteins, tetR family J4N42_05490 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J4N42_05490 PF02770 Acyl-CoA dehydrogenase, middle domain J4N42_05490 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J4N42_05490 PF09317 Domain of unknown function (DUF1974) J4N42_05495 PF07055 Enoyl reductase FAD binding domain J4N42_05495 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase J4N42_05495 PF12241 Trans-2-enoyl-CoA reductase catalytic region J4N42_05500 PF02080 TrkA-C domain J4N42_05500 PF06826 Predicted Permease Membrane Region J4N42_05505 PF00462 Glutaredoxin J4N42_05510 PF00465 Iron-containing alcohol dehydrogenase J4N42_05515 PF01380 SIS domain J4N42_05515 PF01418 Helix-turn-helix domain, rpiR family J4N42_05520 PF00282 Pyridoxal-dependent decarboxylase conserved domain J4N42_05530 PF03956 Lysine exporter LysO J4N42_05540 PF04994 TfoX C-terminal domain J4N42_05540 PF04993 TfoX N-terminal domain J4N42_05555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_05555 PF00512 His Kinase A (phospho-acceptor) domain J4N42_05565 PF00266 Aminotransferase class-V J4N42_05575 PF11842 Domain of unknown function (DUF3362) J4N42_05575 PF04055 Radical SAM superfamily J4N42_05575 PF08497 Radical SAM N-terminal J4N42_05580 PF00989 PAS fold J4N42_05580 PF00563 EAL domain J4N42_05580 PF01590 GAF domain J4N42_05580 PF00990 Diguanylate cyclase, GGDEF domain J4N42_05585 PF00563 EAL domain J4N42_05585 PF03707 Bacterial signalling protein N terminal repeat J4N42_05585 PF00990 Diguanylate cyclase, GGDEF domain J4N42_05600 PF03466 LysR substrate binding domain J4N42_05600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_05605 PF08267 Cobalamin-independent synthase, N-terminal domain J4N42_05605 PF01717 Cobalamin-independent synthase, Catalytic domain J4N42_05620 PF03795 YCII-related domain J4N42_05625 PF03061 Thioesterase superfamily J4N42_05630 PF04279 Intracellular septation protein A J4N42_05640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_05640 PF00072 Response regulator receiver domain J4N42_05645 PF17327 Acyl homoserine lactone synthase J4N42_05650 PF00375 Sodium:dicarboxylate symporter family J4N42_05655 PF00290 Tryptophan synthase alpha chain J4N42_05660 PF00291 Pyridoxal-phosphate dependent enzyme J4N42_05665 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase J4N42_05665 PF00218 Indole-3-glycerol phosphate synthase J4N42_05670 PF02885 Glycosyl transferase family, helical bundle domain J4N42_05670 PF00591 Glycosyl transferase family, a/b domain J4N42_05675 PF00117 Glutamine amidotransferase class-I J4N42_05680 PF04715 Anthranilate synthase component I, N terminal region J4N42_05680 PF00425 chorismate binding enzyme J4N42_05690 PF02811 PHP domain J4N42_05695 PF01300 Telomere recombination J4N42_05700 PF00849 RNA pseudouridylate synthase J4N42_05700 PF01479 S4 domain J4N42_05705 PF00664 ABC transporter transmembrane region J4N42_05705 PF00005 ABC transporter J4N42_05710 PF00664 ABC transporter transmembrane region J4N42_05710 PF00005 ABC transporter J4N42_05715 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N42_05725 PF00266 Aminotransferase class-V J4N42_05735 PF00072 Response regulator receiver domain J4N42_05735 PF00990 Diguanylate cyclase, GGDEF domain J4N42_05740 PF02698 DUF218 domain J4N42_05750 PF00390 Malic enzyme, N-terminal domain J4N42_05750 PF03949 Malic enzyme, NAD binding domain J4N42_05755 PF00270 DEAD/DEAH box helicase J4N42_05755 PF11898 Domain of unknown function (DUF3418) J4N42_05755 PF04408 Helicase associated domain (HA2) J4N42_05755 PF00271 Helicase conserved C-terminal domain J4N42_05755 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold J4N42_05770 PF00155 Aminotransferase class I and II J4N42_05775 PF00563 EAL domain J4N42_05775 PF13185 GAF domain J4N42_05775 PF00990 Diguanylate cyclase, GGDEF domain J4N42_05780 PF00672 HAMP domain J4N42_05780 PF01966 HD domain J4N42_05790 PF00155 Aminotransferase class I and II J4N42_05790 PF00392 Bacterial regulatory proteins, gntR family J4N42_05800 PF00152 tRNA synthetases class II (D, K and N) J4N42_05800 PF01336 OB-fold nucleic acid binding domain J4N42_05805 PF00672 HAMP domain J4N42_05805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_05805 PF17200 Single Cache domain 2 J4N42_05810 PF01242 6-pyruvoyl tetrahydropterin synthase J4N42_05820 PF03222 Tryptophan/tyrosine permease family J4N42_05825 PF00563 EAL domain J4N42_05825 PF00990 Diguanylate cyclase, GGDEF domain J4N42_05825 PF03707 Bacterial signalling protein N terminal repeat J4N42_05825 PF13188 PAS domain J4N42_05830 PF03313 Serine dehydratase alpha chain J4N42_05830 PF03315 Serine dehydratase beta chain J4N42_05835 PF03222 Tryptophan/tyrosine permease family J4N42_05840 PF00293 NUDIX domain J4N42_05850 PF09308 LuxQ, periplasmic J4N42_05850 PF00072 Response regulator receiver domain J4N42_05850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_05850 PF00512 His Kinase A (phospho-acceptor) domain J4N42_05855 PF04715 Anthranilate synthase component I, N terminal region J4N42_05855 PF00425 chorismate binding enzyme J4N42_05870 PF04317 YcjX-like family, DUF463 J4N42_05875 PF05128 Domain of unknown function (DUF697) J4N42_05880 PF18024 Helix-turn-helix domain J4N42_05880 PF00158 Sigma-54 interaction domain J4N42_05885 PF13302 Acetyltransferase (GNAT) domain J4N42_05900 PF00925 GTP cyclohydrolase II J4N42_05925 PF03734 L,D-transpeptidase catalytic domain J4N42_05925 PF01471 Putative peptidoglycan binding domain J4N42_05930 PF05951 Bacterial protein of unknown function (DUF882) J4N42_05935 PF00753 Metallo-beta-lactamase superfamily J4N42_05975 PF13183 4Fe-4S dicluster domain J4N42_05975 PF02913 FAD linked oxidases, C-terminal domain J4N42_05975 PF01565 FAD binding domain J4N42_05995 PF00221 Aromatic amino acid lyase J4N42_06000 PF01175 Urocanase Rossmann-like domain J4N42_06000 PF17392 Urocanase C-terminal domain J4N42_06000 PF17391 Urocanase N-terminal domain J4N42_06005 PF00491 Arginase family J4N42_06010 PF01979 Amidohydrolase family J4N42_06015 PF00392 Bacterial regulatory proteins, gntR family J4N42_06015 PF07702 UTRA domain J4N42_06020 PF04266 ASCH domain J4N42_06025 PF04269 Protein of unknown function, DUF440 J4N42_06030 PF01132 Elongation factor P (EF-P) OB domain J4N42_06030 PF08207 Elongation factor P (EF-P) KOW-like domain J4N42_06030 PF09285 Elongation factor P, C-terminal J4N42_06040 PF00136 DNA polymerase family B J4N42_06040 PF03104 DNA polymerase family B, exonuclease domain J4N42_06045 PF00196 Bacterial regulatory proteins, luxR family J4N42_06045 PF00072 Response regulator receiver domain J4N42_06050 PF02151 UvrB/uvrC motif J4N42_06050 PF01541 GIY-YIG catalytic domain J4N42_06050 PF08459 UvrC Helix-hairpin-helix N-terminal J4N42_06055 PF01066 CDP-alcohol phosphatidyltransferase J4N42_06095 PF07995 Glucose / Sorbosone dehydrogenase J4N42_06105 PF00012 Hsp70 protein J4N42_06110 PF00012 Hsp70 protein J4N42_06155 PF00270 DEAD/DEAH box helicase J4N42_06155 PF11898 Domain of unknown function (DUF3418) J4N42_06155 PF04408 Helicase associated domain (HA2) J4N42_06155 PF00271 Helicase conserved C-terminal domain J4N42_06155 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold J4N42_06185 PF00582 Universal stress protein family J4N42_06195 PF00005 ABC transporter J4N42_06200 PF00664 ABC transporter transmembrane region J4N42_06200 PF00005 ABC transporter J4N42_06205 PF00529 HlyD membrane-fusion protein of T1SS J4N42_06215 PF00657 GDSL-like Lipase/Acylhydrolase J4N42_06225 PF00005 ABC transporter J4N42_06245 PF01872 RibD C-terminal domain J4N42_06245 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J4N42_06255 PF02567 Phenazine biosynthesis-like protein J4N42_06260 PF04954 Siderophore-interacting protein J4N42_06260 PF08021 Siderophore-interacting FAD-binding domain J4N42_06275 PF03466 LysR substrate binding domain J4N42_06275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_06285 PF07690 Major Facilitator Superfamily J4N42_06290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_06290 PF03466 LysR substrate binding domain J4N42_06300 PF12833 Helix-turn-helix domain J4N42_06305 PF13305 Tetracyclin repressor-like, C-terminal domain J4N42_06305 PF00440 Bacterial regulatory proteins, tetR family J4N42_06320 PF01554 MatE J4N42_06325 PF00005 ABC transporter J4N42_06325 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N42_06330 PF00005 ABC transporter J4N42_06330 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N42_06335 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N42_06340 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_06350 PF02074 Carboxypeptidase Taq (M32) metallopeptidase J4N42_06365 PF01810 LysE type translocator J4N42_06370 PF11849 Domain of unknown function (DUF3369) J4N42_06375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_06375 PF00512 His Kinase A (phospho-acceptor) domain J4N42_06375 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N42_06385 PF01235 Sodium:alanine symporter family J4N42_06400 PF00563 EAL domain J4N42_06400 PF03707 Bacterial signalling protein N terminal repeat J4N42_06400 PF00990 Diguanylate cyclase, GGDEF domain J4N42_06410 PF00970 Oxidoreductase FAD-binding domain J4N42_06410 PF00175 Oxidoreductase NAD-binding domain J4N42_06415 PF03611 PTS system sugar-specific permease component J4N42_06425 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N42_06430 PF00356 Bacterial regulatory proteins, lacI family J4N42_06445 PF00155 Aminotransferase class I and II J4N42_06450 PF12833 Helix-turn-helix domain J4N42_06450 PF01497 Periplasmic binding protein J4N42_06455 PF10415 Fumarase C C-terminus J4N42_06455 PF00206 Lyase J4N42_06465 PF00672 HAMP domain J4N42_06465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_06465 PF12729 Four helix bundle sensory module for signal transduction J4N42_06470 PF13382 Adenine deaminase C-terminal domain J4N42_06470 PF01979 Amidohydrolase family J4N42_06480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_06480 PF03466 LysR substrate binding domain J4N42_06490 PF03466 LysR substrate binding domain J4N42_06490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_06510 PF00873 AcrB/AcrD/AcrF family J4N42_06515 PF00529 HlyD membrane-fusion protein of T1SS J4N42_06515 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N42_06530 PF00072 Response regulator receiver domain J4N42_06530 PF01627 Hpt domain J4N42_06530 PF00512 His Kinase A (phospho-acceptor) domain J4N42_06530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_06530 PF00672 HAMP domain J4N42_06530 PF17149 Periplasmic sensor domain found in signal transduction proteins J4N42_06540 PF00925 GTP cyclohydrolase II J4N42_06540 PF08719 Domain of unknown function (DUF1768) J4N42_06545 PF03793 PASTA domain J4N42_06545 PF00069 Protein kinase domain J4N42_06550 PF01546 Peptidase family M20/M25/M40 J4N42_06550 PF07687 Peptidase dimerisation domain J4N42_06555 PF12792 CSS motif domain associated with EAL J4N42_06555 PF00563 EAL domain J4N42_06560 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N42_06565 PF04209 homogentisate 1,2-dioxygenase J4N42_06575 PF14497 Glutathione S-transferase, C-terminal domain J4N42_06575 PF02798 Glutathione S-transferase, N-terminal domain J4N42_06580 PF00455 DeoR C terminal sensor domain J4N42_06580 PF08220 DeoR-like helix-turn-helix domain J4N42_06585 PF03009 Glycerophosphoryl diester phosphodiesterase family J4N42_06590 PF03480 Bacterial extracellular solute-binding protein, family 7 J4N42_06600 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J4N42_06610 PF08220 DeoR-like helix-turn-helix domain J4N42_06610 PF00455 DeoR C terminal sensor domain J4N42_06615 PF00005 ABC transporter J4N42_06615 PF17912 MalK OB fold domain J4N42_06620 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_06625 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_06630 PF13416 Bacterial extracellular solute-binding protein J4N42_06640 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain J4N42_06640 PF00056 lactate/malate dehydrogenase, NAD binding domain J4N42_06645 PF00144 Beta-lactamase J4N42_06650 PF00753 Metallo-beta-lactamase superfamily J4N42_06660 PF04324 BFD-like [2Fe-2S] binding domain J4N42_06660 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J4N42_06660 PF18267 Rubredoxin NAD+ reductase C-terminal domain J4N42_06660 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain J4N42_06660 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N42_06665 PF13806 Rieske-like [2Fe-2S] domain J4N42_06670 PF01226 Formate/nitrite transporter J4N42_06675 PF10414 Sirohaem synthase dimerisation region J4N42_06675 PF14824 Sirohaem biosynthesis protein central J4N42_06675 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N42_06680 PF01144 Coenzyme A transferase J4N42_06685 PF01144 Coenzyme A transferase J4N42_06690 PF00108 Thiolase, N-terminal domain J4N42_06690 PF02803 Thiolase, C-terminal domain J4N42_06695 PF03466 LysR substrate binding domain J4N42_06695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_06700 PF00072 Response regulator receiver domain J4N42_06700 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J4N42_06700 PF00512 His Kinase A (phospho-acceptor) domain J4N42_06700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_06700 PF01627 Hpt domain J4N42_06700 PF00672 HAMP domain J4N42_06705 PF00072 Response regulator receiver domain J4N42_06715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_06715 PF00989 PAS fold J4N42_06715 PF17203 Single cache domain 3 J4N42_06715 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain J4N42_06720 PF12431 Transcriptional regulator J4N42_06720 PF00072 Response regulator receiver domain J4N42_06730 PF00072 Response regulator receiver domain J4N42_06730 PF01584 CheW-like domain J4N42_06750 PF00072 Response regulator receiver domain J4N42_06750 PF00990 Diguanylate cyclase, GGDEF domain J4N42_06765 PF13309 HTH domain J4N42_06765 PF08348 YheO-like PAS domain J4N42_06770 PF01042 Endoribonuclease L-PSP J4N42_06775 PF00375 Sodium:dicarboxylate symporter family J4N42_06780 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N42_06780 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4N42_06795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_06795 PF03466 LysR substrate binding domain J4N42_06810 PF01863 Protein of unknown function DUF45 J4N42_06815 PF05971 RNA methyltransferase J4N42_06830 PF04204 Homoserine O-succinyltransferase J4N42_06845 PF12792 CSS motif domain associated with EAL J4N42_06845 PF00563 EAL domain J4N42_06860 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N42_06870 PF01970 Tripartite tricarboxylate transporter TctA family J4N42_06900 PF00285 Citrate synthase, C-terminal domain J4N42_06905 PF00694 Aconitase C-terminal domain J4N42_06905 PF00330 Aconitase family (aconitate hydratase) J4N42_06910 PF04303 PrpF protein J4N42_06915 PF16177 Acetyl-coenzyme A synthetase N-terminus J4N42_06915 PF00501 AMP-binding enzyme J4N42_06915 PF13193 AMP-binding enzyme C-terminal domain J4N42_06940 PF04055 Radical SAM superfamily J4N42_06945 PF06508 Queuosine biosynthesis protein QueC J4N42_06950 PF00990 Diguanylate cyclase, GGDEF domain J4N42_06960 PF00691 OmpA family J4N42_06960 PF05736 OprF membrane domain J4N42_06985 PF17785 PUA-like domain J4N42_06985 PF10672 S-adenosylmethionine-dependent methyltransferase J4N42_06990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_06990 PF00672 HAMP domain J4N42_06990 PF02743 Cache domain J4N42_06995 PF00708 Acylphosphatase J4N42_07000 PF04358 DsrC like protein J4N42_07005 PF01027 Inhibitor of apoptosis-promoting Bax1 J4N42_07010 PF00005 ABC transporter J4N42_07015 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_07020 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_07025 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N42_07030 PF10414 Sirohaem synthase dimerisation region J4N42_07030 PF14824 Sirohaem biosynthesis protein central J4N42_07030 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N42_07035 PF04461 Protein of unknown function (DUF520) J4N42_07040 PF00793 DAHP synthetase I family J4N42_07045 PF00391 PEP-utilising enzyme, mobile domain J4N42_07045 PF02896 PEP-utilising enzyme, TIM barrel domain J4N42_07045 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain J4N42_07060 PF17783 CvfB-like winged helix domain J4N42_07060 PF13509 S1 domain J4N42_07065 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF J4N42_07065 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF J4N42_07065 PF01189 16S rRNA methyltransferase RsmB/F J4N42_07070 PF02470 MlaD protein J4N42_07075 PF04403 Paraquat-inducible protein A J4N42_07080 PF00664 ABC transporter transmembrane region J4N42_07080 PF00005 ABC transporter J4N42_07085 PF13185 GAF domain J4N42_07090 PF17516 ProQ C-terminal domain J4N42_07090 PF04352 ProQ/FINO family J4N42_07095 PF11818 C-terminal domain of tail specific protease (DUF3340) J4N42_07095 PF00595 PDZ domain J4N42_07095 PF03572 Peptidase family S41 J4N42_07095 PF17804 Tail specific protease N-terminal domain J4N42_07105 PF11940 Domain of unknown function (DUF3458) Ig-like fold J4N42_07105 PF17432 Domain of unknown function (DUF3458_C) ARM repeats J4N42_07105 PF01433 Peptidase family M1 domain J4N42_07115 PF05088 Bacterial NAD-glutamate dehydrogenase J4N42_07120 PF01180 Dihydroorotate dehydrogenase J4N42_07125 PF07126 Cell-division protein ZapC J4N42_07130 PF01170 Putative RNA methylase family UPF0020 J4N42_07130 PF02926 THUMP domain J4N42_07130 PF10672 S-adenosylmethionine-dependent methyltransferase J4N42_07140 PF12848 ABC transporter J4N42_07140 PF16326 ABC transporter C-terminal domain J4N42_07140 PF00005 ABC transporter J4N42_07150 PF04957 Ribosome modulation factor J4N42_07155 PF07977 FabA-like domain J4N42_07160 PF13654 AAA domain J4N42_07160 PF05362 Lon protease (S16) C-terminal proteolytic domain J4N42_07165 PF06303 MatP N-terminal domain J4N42_07165 PF17414 MatP C-terminal ribbon-helix-helix domain J4N42_07180 PF00072 Response regulator receiver domain J4N42_07180 PF09308 LuxQ, periplasmic J4N42_07180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_07180 PF00512 His Kinase A (phospho-acceptor) domain J4N42_07195 PF00115 Cytochrome C and Quinol oxidase polypeptide I J4N42_07210 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP J4N42_07210 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J4N42_07220 PF00403 Heavy-metal-associated domain J4N42_07235 PF13545 Crp-like helix-turn-helix domain J4N42_07235 PF00027 Cyclic nucleotide-binding domain J4N42_07240 PF00582 Universal stress protein family J4N42_07245 PF01171 PP-loop family J4N42_07250 PF01554 MatE J4N42_07270 PF08402 TOBE domain J4N42_07270 PF00005 ABC transporter J4N42_07275 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_07280 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_07285 PF13416 Bacterial extracellular solute-binding protein J4N42_07300 PF02146 Sir2 family J4N42_07305 PF00909 Ammonium Transporter Family J4N42_07320 PF13247 4Fe-4S dicluster domain J4N42_07325 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J4N42_07325 PF00384 Molybdopterin oxidoreductase J4N42_07325 PF01568 Molydopterin dinucleotide binding domain J4N42_07355 PF02634 FdhD/NarQ family J4N42_07360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_07360 PF00672 HAMP domain J4N42_07370 PF00005 ABC transporter J4N42_07370 PF12848 ABC transporter J4N42_07385 PF00512 His Kinase A (phospho-acceptor) domain J4N42_07385 PF00989 PAS fold J4N42_07385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_07390 PF02954 Bacterial regulatory protein, Fis family J4N42_07390 PF00072 Response regulator receiver domain J4N42_07390 PF00158 Sigma-54 interaction domain J4N42_07395 PF12849 PBP superfamily domain J4N42_07400 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_07405 PF08402 TOBE domain J4N42_07405 PF00005 ABC transporter J4N42_07410 PF12804 MobA-like NTP transferase domain J4N42_07415 PF00994 Probable molybdopterin binding domain J4N42_07415 PF03453 MoeA N-terminal region (domain I and II) J4N42_07415 PF03454 MoeA C-terminal region (domain IV) J4N42_07425 PF00480 ROK family J4N42_07430 PF03942 DTW domain J4N42_07440 PF12729 Four helix bundle sensory module for signal transduction J4N42_07440 PF00672 HAMP domain J4N42_07440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_07445 PF00877 NlpC/P60 family J4N42_07455 PF03881 Fructosamine kinase J4N42_07465 PF04717 Type VI secretion system, phage-baseplate injector J4N42_07465 PF06715 Gp5 C-terminal repeat (3 copies) J4N42_07495 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath J4N42_07520 PF07724 AAA domain (Cdc48 subfamily) J4N42_07520 PF17871 AAA lid domain J4N42_07520 PF00004 ATPase family associated with various cellular activities (AAA) J4N42_07520 PF10431 C-terminal, D2-small domain, of ClpB protein J4N42_07525 PF07690 Major Facilitator Superfamily J4N42_07550 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE J4N42_07570 PF00677 Lumazine binding domain J4N42_07575 PF01554 MatE J4N42_07580 PF01068 ATP dependent DNA ligase domain J4N42_07580 PF14743 DNA ligase OB-like domain J4N42_07585 PF01740 STAS domain J4N42_07595 PF10531 SLBB domain J4N42_07595 PF02563 Polysaccharide biosynthesis/export protein J4N42_07610 PF00672 HAMP domain J4N42_07610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_07610 PF01627 Hpt domain J4N42_07610 PF00072 Response regulator receiver domain J4N42_07610 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J4N42_07610 PF00512 His Kinase A (phospho-acceptor) domain J4N42_07615 PF02954 Bacterial regulatory protein, Fis family J4N42_07615 PF00158 Sigma-54 interaction domain J4N42_07615 PF00072 Response regulator receiver domain J4N42_07620 PF13439 Glycosyltransferase Family 4 J4N42_07620 PF00534 Glycosyl transferases group 1 J4N42_07645 PF00534 Glycosyl transferases group 1 J4N42_07645 PF13439 Glycosyltransferase Family 4 J4N42_07655 PF02397 Bacterial sugar transferase J4N42_07665 PF07693 KAP family P-loop domain J4N42_07670 PF00005 ABC transporter J4N42_07675 PF01032 FecCD transport family J4N42_07680 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family J4N42_07695 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase J4N42_07700 PF02654 Cobalamin-5-phosphate synthase J4N42_07705 PF02277 Phosphoribosyltransferase J4N42_07715 PF07690 Major Facilitator Superfamily J4N42_07730 PF00929 Exonuclease J4N42_07730 PF08411 Exonuclease C-terminal J4N42_07735 PF03788 LrgA family J4N42_07740 PF04172 LrgB-like family J4N42_07745 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J4N42_07745 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region J4N42_07765 PF04717 Type VI secretion system, phage-baseplate injector J4N42_07765 PF01471 Putative peptidoglycan binding domain J4N42_07770 PF05638 Type VI secretion system effector, Hcp J4N42_07780 PF13187 4Fe-4S dicluster domain J4N42_07780 PF01645 Conserved region in glutamate synthase J4N42_07795 PF02222 ATP-grasp domain J4N42_07800 PF05724 Thiopurine S-methyltransferase (TPMT) J4N42_07810 PF00216 Bacterial DNA-binding protein J4N42_07825 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain J4N42_07825 PF01409 tRNA synthetases class II core domain (F) J4N42_07855 PF01553 Acyltransferase J4N42_07860 PF00270 DEAD/DEAH box helicase J4N42_07860 PF00271 Helicase conserved C-terminal domain J4N42_07865 PF00465 Iron-containing alcohol dehydrogenase J4N42_07875 PF01235 Sodium:alanine symporter family J4N42_07880 PF12833 Helix-turn-helix domain J4N42_07880 PF02311 AraC-like ligand binding domain J4N42_07890 PF00962 Adenosine/AMP deaminase J4N42_07895 PF00892 EamA-like transporter family J4N42_07900 PF07702 UTRA domain J4N42_07900 PF00392 Bacterial regulatory proteins, gntR family J4N42_07905 PF00089 Trypsin J4N42_07910 PF13520 Amino acid permease J4N42_07915 PF04013 Putative SAM-dependent RNA methyltransferase J4N42_07920 PF00672 HAMP domain J4N42_07920 PF02743 Cache domain J4N42_07920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_07945 PF00005 ABC transporter J4N42_07945 PF00571 CBS domain J4N42_07950 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_07960 PF03741 Integral membrane protein TerC family J4N42_07965 PF11871 Domain of unknown function (DUF3391) J4N42_07965 PF01966 HD domain J4N42_07970 PF00072 Response regulator receiver domain J4N42_07970 PF00196 Bacterial regulatory proteins, luxR family J4N42_07975 PF07730 Histidine kinase J4N42_07975 PF17200 Single Cache domain 2 J4N42_07980 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J4N42_07990 PF03480 Bacterial extracellular solute-binding protein, family 7 J4N42_07995 PF01259 SAICAR synthetase J4N42_08000 PF17200 Single Cache domain 2 J4N42_08000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_08000 PF00672 HAMP domain J4N42_08020 PF02028 BCCT, betaine/carnitine/choline family transporter J4N42_08025 PF01047 MarR family J4N42_08035 PF01810 LysE type translocator J4N42_08040 PF03989 DNA gyrase C-terminal domain, beta-propeller J4N42_08040 PF00521 DNA gyrase/topoisomerase IV, subunit A J4N42_08050 PF03477 ATP cone domain J4N42_08050 PF02867 Ribonucleotide reductase, barrel domain J4N42_08050 PF00317 Ribonucleotide reductase, all-alpha domain J4N42_08055 PF00268 Ribonucleotide reductase, small chain J4N42_08060 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N42_08060 PF00970 Oxidoreductase FAD-binding domain J4N42_08060 PF00175 Oxidoreductase NAD-binding domain J4N42_08070 PF13533 Biotin-lipoyl like J4N42_08075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_08075 PF00072 Response regulator receiver domain J4N42_08090 PF00005 ABC transporter J4N42_08090 PF00664 ABC transporter transmembrane region J4N42_08105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_08105 PF00512 His Kinase A (phospho-acceptor) domain J4N42_08105 PF00672 HAMP domain J4N42_08105 PF01627 Hpt domain J4N42_08105 PF00072 Response regulator receiver domain J4N42_08105 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J4N42_08115 PF00994 Probable molybdopterin binding domain J4N42_08130 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain J4N42_08135 PF03435 Saccharopine dehydrogenase NADP binding domain J4N42_08135 PF16653 Saccharopine dehydrogenase C-terminal domain J4N42_08140 PF00202 Aminotransferase class-III J4N42_08155 PF03422 Carbohydrate binding module (family 6) J4N42_08155 PF02412 Thrombospondin type 3 repeat J4N42_08160 PF03334 Na+/H+ antiporter subunit J4N42_08165 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) J4N42_08170 PF01899 Na+/H+ ion antiporter subunit J4N42_08175 PF00361 Proton-conducting membrane transporter J4N42_08180 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L J4N42_08185 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter J4N42_08190 PF13244 Domain of unknown function (DUF4040) J4N42_08190 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J4N42_08190 PF00361 Proton-conducting membrane transporter J4N42_08195 PF06965 Na+/H+ antiporter 1 J4N42_08210 PF00005 ABC transporter J4N42_08215 PF01554 MatE J4N42_08220 PF11066 Protein of unknown function (DUF2867) J4N42_08220 PF13460 NAD(P)H-binding J4N42_08230 PF07690 Major Facilitator Superfamily J4N42_08235 PF01479 S4 domain J4N42_08235 PF00849 RNA pseudouridylate synthase J4N42_08240 PF04851 Type III restriction enzyme, res subunit J4N42_08240 PF00271 Helicase conserved C-terminal domain J4N42_08250 PF00072 Response regulator receiver domain J4N42_08250 PF00486 Transcriptional regulatory protein, C terminal J4N42_08255 PF17203 Single cache domain 3 J4N42_08255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_08255 PF00989 PAS fold J4N42_08255 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain J4N42_08280 PF04717 Type VI secretion system, phage-baseplate injector J4N42_08280 PF16671 Actin cross-linking domain J4N42_08285 PF05638 Type VI secretion system effector, Hcp J4N42_08295 PF00535 Glycosyl transferase family 2 J4N42_08300 PF01386 Ribosomal L25p family J4N42_08305 PF00196 Bacterial regulatory proteins, luxR family J4N42_08305 PF00072 Response regulator receiver domain J4N42_08310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_08310 PF13426 PAS domain J4N42_08310 PF08447 PAS fold J4N42_08310 PF00989 PAS fold J4N42_08310 PF00512 His Kinase A (phospho-acceptor) domain J4N42_08310 PF13493 Domain of unknown function (DUF4118) J4N42_08315 PF00486 Transcriptional regulatory protein, C terminal J4N42_08335 PF00704 Glycosyl hydrolases family 18 J4N42_08345 PF18416 N-acetylglucosamine binding protein domain 2 J4N42_08345 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading J4N42_08350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_08350 PF00512 His Kinase A (phospho-acceptor) domain J4N42_08425 PF00437 Type II/IV secretion system protein J4N42_08440 PF13629 Pilus formation protein N terminal region J4N42_08440 PF04972 BON domain J4N42_08440 PF00263 Bacterial type II and III secretion system protein J4N42_08465 PF00150 Cellulase (glycosyl hydrolase family 5) J4N42_08465 PF14600 Cellulose-binding domain J4N42_08470 PF03831 PhnA domain J4N42_08470 PF08274 PhnA Zinc-Ribbon J4N42_08475 PF00132 Bacterial transferase hexapeptide (six repeats) J4N42_08475 PF12804 MobA-like NTP transferase domain J4N42_08490 PF03150 Di-haem cytochrome c peroxidase J4N42_08490 PF00034 Cytochrome c J4N42_08495 PF00072 Response regulator receiver domain J4N42_08495 PF09308 LuxQ, periplasmic J4N42_08495 PF00512 His Kinase A (phospho-acceptor) domain J4N42_08495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_08510 PF00563 EAL domain J4N42_08510 PF00990 Diguanylate cyclase, GGDEF domain J4N42_08510 PF03707 Bacterial signalling protein N terminal repeat J4N42_08515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_08515 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N42_08515 PF00512 His Kinase A (phospho-acceptor) domain J4N42_08520 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) J4N42_08550 PF06945 Protein of unknown function (DUF1289) J4N42_08560 PF13416 Bacterial extracellular solute-binding protein J4N42_08565 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_08570 PF00005 ABC transporter J4N42_08575 PF01066 CDP-alcohol phosphatidyltransferase J4N42_08580 PF00990 Diguanylate cyclase, GGDEF domain J4N42_08585 PF05736 OprF membrane domain J4N42_08585 PF00691 OmpA family J4N42_08620 PF00437 Type II/IV secretion system protein J4N42_08635 PF04972 BON domain J4N42_08635 PF13629 Pilus formation protein N terminal region J4N42_08635 PF00263 Bacterial type II and III secretion system protein J4N42_08665 PF01170 Putative RNA methylase family UPF0020 J4N42_08665 PF10672 S-adenosylmethionine-dependent methyltransferase J4N42_08665 PF02926 THUMP domain J4N42_08670 PF00849 RNA pseudouridylate synthase J4N42_08675 PF12729 Four helix bundle sensory module for signal transduction J4N42_08675 PF00672 HAMP domain J4N42_08675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_08680 PF00209 Sodium:neurotransmitter symporter family J4N42_08685 PF13091 PLD-like domain J4N42_08685 PF13396 Phospholipase_D-nuclease N-terminal J4N42_08690 PF01053 Cys/Met metabolism PLP-dependent enzyme J4N42_08700 PF03352 Methyladenine glycosylase J4N42_08705 PF00873 AcrB/AcrD/AcrF family J4N42_08710 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N42_08715 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N42_08720 PF04024 PspC domain J4N42_08725 PF06667 Phage shock protein B J4N42_08730 PF04012 PspA/IM30 family J4N42_08735 PF02954 Bacterial regulatory protein, Fis family J4N42_08735 PF00158 Sigma-54 interaction domain J4N42_08740 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N42_08745 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_08750 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_08750 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N42_08755 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N42_08755 PF00005 ABC transporter J4N42_08760 PF00005 ABC transporter J4N42_08775 PF02833 DHHA2 domain J4N42_08775 PF01368 DHH family J4N42_08790 PF16874 Glycosyl hydrolase family 36 C-terminal domain J4N42_08790 PF16875 Glycosyl hydrolase family 36 N-terminal domain J4N42_08800 PF00384 Molybdopterin oxidoreductase J4N42_08800 PF18364 Molybdopterin oxidoreductase N-terminal domain J4N42_08800 PF01568 Molydopterin dinucleotide binding domain J4N42_08805 PF03264 NapC/NirT cytochrome c family, N-terminal region J4N42_08810 PF06796 Periplasmic nitrate reductase protein NapE J4N42_08815 PF03649 Uncharacterised protein family (UPF0014) J4N42_08820 PF01226 Formate/nitrite transporter J4N42_08835 PF03466 LysR substrate binding domain J4N42_08835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_08845 PF02698 DUF218 domain J4N42_08850 PF07724 AAA domain (Cdc48 subfamily) J4N42_08850 PF17871 AAA lid domain J4N42_08850 PF02861 Clp amino terminal domain, pathogenicity island component J4N42_08850 PF10431 C-terminal, D2-small domain, of ClpB protein J4N42_08850 PF00004 ATPase family associated with various cellular activities (AAA) J4N42_08855 PF02617 ATP-dependent Clp protease adaptor protein ClpS J4N42_08860 PF00313 'Cold-shock' DNA-binding domain J4N42_08870 PF03971 Monomeric isocitrate dehydrogenase J4N42_08875 PF00849 RNA pseudouridylate synthase J4N42_08880 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase J4N42_08880 PF01502 Phosphoribosyl-AMP cyclohydrolase J4N42_08885 PF00977 Histidine biosynthesis protein J4N42_08890 PF00977 Histidine biosynthesis protein J4N42_08895 PF00117 Glutamine amidotransferase class-I J4N42_08900 PF00475 Imidazoleglycerol-phosphate dehydratase J4N42_08900 PF08645 Polynucleotide kinase 3 phosphatase J4N42_08905 PF00155 Aminotransferase class I and II J4N42_08910 PF00815 Histidinol dehydrogenase J4N42_08915 PF01634 ATP phosphoribosyltransferase J4N42_08915 PF08029 HisG, C-terminal domain J4N42_08920 PF03553 Na+/H+ antiporter family J4N42_08925 PF00816 H-NS histone family J4N42_08930 PF00294 pfkB family carbohydrate kinase J4N42_08945 PF04356 Protein of unknown function (DUF489) J4N42_08950 PF08328 Adenylosuccinate lyase C-terminal J4N42_08950 PF00206 Lyase J4N42_08955 PF01435 Peptidase family M48 J4N42_08970 PF12697 Alpha/beta hydrolase family J4N42_08970 PF08241 Methyltransferase domain J4N42_08975 PF00155 Aminotransferase class I and II J4N42_08980 PF06968 Biotin and Thiamin Synthesis associated domain J4N42_08980 PF04055 Radical SAM superfamily J4N42_08985 PF00202 Aminotransferase class-III J4N42_08990 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) J4N42_08995 PF13609 Gram-negative porin J4N42_09000 PF06733 DEAD_2 J4N42_09000 PF13307 Helicase C-terminal domain J4N42_09005 PF01925 Sulfite exporter TauE/SafE J4N42_09015 PF10689 Protein of unknown function (DUF2496) J4N42_09020 PF08007 Cupin superfamily protein J4N42_09030 PF00672 HAMP domain J4N42_09030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_09035 PF03372 Endonuclease/Exonuclease/phosphatase family J4N42_09040 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_09045 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_09050 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N42_09055 PF00005 ABC transporter J4N42_09065 PF01228 Glycine radical J4N42_09065 PF02901 Pyruvate formate lyase-like J4N42_09075 PF00672 HAMP domain J4N42_09075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_09080 PF04055 Radical SAM superfamily J4N42_09090 PF03887 YfbU domain J4N42_09100 PF08298 PrkA AAA domain J4N42_09100 PF06798 PrkA serine protein kinase C-terminal domain J4N42_09105 PF04285 Protein of unknown function (DUF444) J4N42_09110 PF04293 SpoVR like protein J4N42_09115 PF02348 Cytidylyltransferase J4N42_09120 PF03966 Trm112p-like protein J4N42_09125 PF02606 Tetraacyldisaccharide-1-P 4'-kinase J4N42_09130 PF00005 ABC transporter J4N42_09130 PF00664 ABC transporter transmembrane region J4N42_09135 PF13567 Domain of unknown function (DUF4131) J4N42_09135 PF03772 Competence protein J4N42_09135 PF00753 Metallo-beta-lactamase superfamily J4N42_09145 PF02687 FtsX-like permease family J4N42_09145 PF12704 MacB-like periplasmic core domain J4N42_09150 PF00005 ABC transporter J4N42_09155 PF02687 FtsX-like permease family J4N42_09155 PF12704 MacB-like periplasmic core domain J4N42_09165 PF00270 DEAD/DEAH box helicase J4N42_09165 PF02559 CarD-like/TRCF domain J4N42_09165 PF03461 TRCF domain J4N42_09165 PF17757 UvrB interaction domain J4N42_09165 PF00271 Helicase conserved C-terminal domain J4N42_09180 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N42_09185 PF05728 Uncharacterised protein family (UPF0227) J4N42_09195 PF13036 Peptidoglycan-synthase activator LpoB J4N42_09195 PF08139 Prokaryotic membrane lipoprotein lipid attachment site J4N42_09210 PF01230 HIT domain J4N42_09215 PF00672 HAMP domain J4N42_09215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_09225 PF07840 FadR C-terminal domain J4N42_09225 PF00392 Bacterial regulatory proteins, gntR family J4N42_09230 PF06450 Bacterial Na+/H+ antiporter B (NhaB) J4N42_09235 PF02600 Disulfide bond formation protein DsbB J4N42_09240 PF13491 4TM region of DNA translocase FtsK/SpoIIIE J4N42_09240 PF17854 FtsK alpha domain J4N42_09240 PF09397 Ftsk gamma domain J4N42_09240 PF01580 FtsK/SpoIIIE family J4N42_09245 PF01037 Lrp/AsnC ligand binding domain J4N42_09250 PF01262 Alanine dehydrogenase/PNT, C-terminal domain J4N42_09250 PF05222 Alanine dehydrogenase/PNT, N-terminal domain J4N42_09255 PF04217 Protein of unknown function, DUF412 J4N42_09260 PF00871 Acetokinase family J4N42_09265 PF07085 DRTGG domain J4N42_09265 PF01515 Phosphate acetyl/butaryl transferase J4N42_09270 PF13409 Glutathione S-transferase, N-terminal domain J4N42_09275 PF07670 Nucleoside recognition J4N42_09280 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N42_09280 PF00005 ABC transporter J4N42_09285 PF00005 ABC transporter J4N42_09285 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N42_09290 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N42_09290 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_09295 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_09300 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N42_09315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_09315 PF03466 LysR substrate binding domain J4N42_09325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_09325 PF03466 LysR substrate binding domain J4N42_09340 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J4N42_09345 PF00593 TonB dependent receptor J4N42_09345 PF07715 TonB-dependent Receptor Plug Domain J4N42_09350 PF12833 Helix-turn-helix domain J4N42_09365 PF03544 Gram-negative bacterial TonB protein C-terminal J4N42_09370 PF02472 Biopolymer transport protein ExbD/TolR J4N42_09375 PF01618 MotA/TolQ/ExbB proton channel family J4N42_09380 PF01618 MotA/TolQ/ExbB proton channel family J4N42_09390 PF00005 ABC transporter J4N42_09395 PF01497 Periplasmic binding protein J4N42_09400 PF01032 FecCD transport family J4N42_09405 PF07715 TonB-dependent Receptor Plug Domain J4N42_09405 PF00593 TonB dependent receptor J4N42_09410 PF01625 Peptide methionine sulfoxide reductase J4N42_09410 PF01641 SelR domain J4N42_09430 PF00588 SpoU rRNA Methylase family J4N42_09430 PF08032 RNA 2'-O ribose methyltransferase substrate binding J4N42_09435 PF11953 Domain of unknown function (DUF3470) J4N42_09435 PF00037 4Fe-4S binding domain J4N42_09445 PF01557 Fumarylacetoacetate (FAA) hydrolase family J4N42_09465 PF13192 Thioredoxin domain J4N42_09465 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N42_09470 PF10417 C-terminal domain of 1-Cys peroxiredoxin J4N42_09470 PF00578 AhpC/TSA family J4N42_09480 PF00990 Diguanylate cyclase, GGDEF domain J4N42_09480 PF05230 MASE2 domain J4N42_09490 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J4N42_09495 PF09619 Type III secretion system lipoprotein chaperone (YscW) J4N42_09510 PF01037 Lrp/AsnC ligand binding domain J4N42_09510 PF13404 AsnC-type helix-turn-helix domain J4N42_09515 PF00291 Pyridoxal-phosphate dependent enzyme J4N42_09520 PF02132 RecR protein J4N42_09520 PF13662 Toprim domain J4N42_09525 PF02575 YbaB/EbfC DNA-binding family J4N42_09530 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding J4N42_09530 PF12170 DNA polymerase III tau subunit V interacting with alpha J4N42_09530 PF12169 DNA polymerase III subunits gamma and tau domain III J4N42_09535 PF00156 Phosphoribosyl transferase domain J4N42_09540 PF04304 Protein of unknown function (DUF454) J4N42_09545 PF00072 Response regulator receiver domain J4N42_09550 PF03466 LysR substrate binding domain J4N42_09550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_09555 PF00881 Nitroreductase family J4N42_09560 PF00378 Enoyl-CoA hydratase/isomerase J4N42_09560 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J4N42_09560 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J4N42_09565 PF00108 Thiolase, N-terminal domain J4N42_09565 PF02803 Thiolase, C-terminal domain J4N42_09570 PF04542 Sigma-70 region 2 J4N42_09570 PF08281 Sigma-70, region 4 J4N42_09580 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J4N42_09585 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J4N42_09590 PF04333 MlaA lipoprotein J4N42_09600 PF03918 Cytochrome C biogenesis protein J4N42_09605 PF08534 Redoxin J4N42_09610 PF01578 Cytochrome C assembly protein J4N42_09610 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal J4N42_09615 PF03100 CcmE J4N42_09625 PF01578 Cytochrome C assembly protein J4N42_09630 PF03379 CcmB protein J4N42_09635 PF00005 ABC transporter J4N42_09645 PF01584 CheW-like domain J4N42_09655 PF13614 AAA domain J4N42_09660 PF01339 CheB methylesterase J4N42_09660 PF00072 Response regulator receiver domain J4N42_09665 PF00072 Response regulator receiver domain J4N42_09665 PF01627 Hpt domain J4N42_09665 PF02895 Signal transducing histidine kinase, homodimeric domain J4N42_09665 PF01584 CheW-like domain J4N42_09665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_09670 PF04344 Chemotaxis phosphatase, CheZ J4N42_09675 PF00072 Response regulator receiver domain J4N42_09680 PF04539 Sigma-70 region 3 J4N42_09680 PF04545 Sigma-70, region 4 J4N42_09680 PF04542 Sigma-70 region 2 J4N42_09685 PF10609 NUBPL iron-transfer P-loop NTPase J4N42_09690 PF00448 SRP54-type protein, GTPase domain J4N42_09695 PF00771 FHIPEP family J4N42_09700 PF00300 Histidine phosphatase superfamily (branch 1) J4N42_09705 PF00675 Insulinase (Peptidase family M16) J4N42_09705 PF16187 Middle or third domain of peptidase_M16 J4N42_09705 PF05193 Peptidase M16 inactive domain J4N42_09710 PF06185 YecM protein J4N42_09715 PF05746 DALR anticodon binding domain J4N42_09715 PF00750 tRNA synthetases class I (R) J4N42_09715 PF03485 Arginyl tRNA synthetase N terminal domain J4N42_09730 PF07664 Ferrous iron transport protein B C terminus J4N42_09730 PF17910 FeoB cytosolic helical domain J4N42_09730 PF02421 Ferrous iron transport protein B J4N42_09730 PF07670 Nucleoside recognition J4N42_09740 PF02311 AraC-like ligand binding domain J4N42_09740 PF12833 Helix-turn-helix domain J4N42_09745 PF01297 Zinc-uptake complex component A periplasmic J4N42_09750 PF00005 ABC transporter J4N42_09755 PF00950 ABC 3 transport family J4N42_09760 PF00156 Phosphoribosyl transferase domain J4N42_09765 PF02674 Colicin V production protein J4N42_09770 PF05036 Sporulation related domain J4N42_09775 PF02875 Mur ligase family, glutamate ligase domain J4N42_09775 PF08245 Mur ligase middle domain J4N42_09780 PF01039 Carboxyl transferase domain J4N42_09780 PF17848 Acetyl-coA carboxylase zinc finger domain J4N42_09785 PF01416 tRNA pseudouridine synthase J4N42_09795 PF02774 Semialdehyde dehydrogenase, dimerisation domain J4N42_09795 PF01118 Semialdehyde dehydrogenase, NAD binding domain J4N42_09800 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J4N42_09800 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N42_09800 PF11890 Domain of unknown function (DUF3410) J4N42_09805 PF00109 Beta-ketoacyl synthase, N-terminal domain J4N42_09805 PF02801 Beta-ketoacyl synthase, C-terminal domain J4N42_09810 PF01266 FAD dependent oxidoreductase J4N42_09810 PF05430 S-adenosyl-L-methionine-dependent methyltransferase J4N42_09820 PF08891 YfcL protein J4N42_09825 PF04315 Elongation factor P hydroxylase J4N42_09830 PF03458 UPF0126 domain J4N42_09835 PF01264 Chorismate synthase J4N42_09840 PF05175 Methyltransferase small domain J4N42_09845 PF01713 Smr domain J4N42_09850 PF01312 FlhB HrpN YscU SpaS Family J4N42_09855 PF01311 Bacterial export proteins, family 1 J4N42_09860 PF01313 Bacterial export proteins, family 3 J4N42_09865 PF00813 FliP family J4N42_09870 PF04347 Flagellar biosynthesis protein, FliO J4N42_09875 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J4N42_09880 PF02154 Flagellar motor switch protein FliM J4N42_09880 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J4N42_09900 PF18269 T3SS EscN ATPase C-terminal domain J4N42_09900 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N42_09910 PF01706 FliG C-terminal domain J4N42_09910 PF14841 FliG middle domain J4N42_09910 PF14842 FliG N-terminal domain J4N42_09915 PF08345 Flagellar M-ring protein C-terminal J4N42_09915 PF01514 Secretory protein of YscJ/FliF family J4N42_09920 PF02049 Flagellar hook-basal body complex protein FliE J4N42_09925 PF00158 Sigma-54 interaction domain J4N42_09925 PF00072 Response regulator receiver domain J4N42_09925 PF02954 Bacterial regulatory protein, Fis family J4N42_09930 PF13188 PAS domain J4N42_09930 PF00512 His Kinase A (phospho-acceptor) domain J4N42_09930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_09935 PF06490 Flagellar regulatory protein FleQ J4N42_09935 PF02954 Bacterial regulatory protein, Fis family J4N42_09935 PF00158 Sigma-54 interaction domain J4N42_09940 PF02561 Flagellar protein FliS J4N42_09950 PF07196 Flagellin hook IN motif J4N42_09950 PF07195 Flagellar hook-associated protein 2 C-terminus J4N42_09950 PF02465 Flagellar hook-associated protein 2 N-terminus J4N42_09955 PF03646 FlaG protein J4N42_09960 PF00669 Bacterial flagellin N-terminal helical region J4N42_09960 PF07196 Flagellin hook IN motif J4N42_09960 PF00700 Bacterial flagellin C-terminal helical region J4N42_09965 PF07196 Flagellin hook IN motif J4N42_09965 PF00700 Bacterial flagellin C-terminal helical region J4N42_09965 PF00669 Bacterial flagellin N-terminal helical region J4N42_09970 PF00669 Bacterial flagellin N-terminal helical region J4N42_09970 PF07196 Flagellin hook IN motif J4N42_09970 PF00700 Bacterial flagellin C-terminal helical region J4N42_09975 PF04261 Dyp-type peroxidase family J4N42_09980 PF11143 Protein of unknown function (DUF2919) J4N42_09985 PF03918 Cytochrome C biogenesis protein J4N42_09990 PF08534 Redoxin J4N42_09995 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal J4N42_09995 PF01578 Cytochrome C assembly protein J4N42_10000 PF03916 Polysulphide reductase, NrfD J4N42_10005 PF13247 4Fe-4S dicluster domain J4N42_10015 PF02335 Cytochrome c552 J4N42_10020 PF01568 Molydopterin dinucleotide binding domain J4N42_10020 PF00384 Molybdopterin oxidoreductase J4N42_10020 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J4N42_10020 PF04324 BFD-like [2Fe-2S] binding domain J4N42_10025 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N42_10025 PF10414 Sirohaem synthase dimerisation region J4N42_10025 PF14824 Sirohaem biosynthesis protein central J4N42_10030 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J4N42_10030 PF04324 BFD-like [2Fe-2S] binding domain J4N42_10030 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N42_10030 PF18267 Rubredoxin NAD+ reductase C-terminal domain J4N42_10030 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain J4N42_10035 PF13806 Rieske-like [2Fe-2S] domain J4N42_10040 PF07690 Major Facilitator Superfamily J4N42_10045 PF00069 Protein kinase domain J4N42_10070 PF03960 ArsC family J4N42_10075 PF01546 Peptidase family M20/M25/M40 J4N42_10075 PF07687 Peptidase dimerisation domain J4N42_10090 PF06804 NlpB/DapX lipoprotein J4N42_10095 PF00701 Dihydrodipicolinate synthetase family J4N42_10100 PF01842 ACT domain J4N42_10105 PF00578 AhpC/TSA family J4N42_10110 PF00884 Sulfatase J4N42_10120 PF02743 Cache domain J4N42_10120 PF00672 HAMP domain J4N42_10120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_10125 PF02743 Cache domain J4N42_10125 PF00672 HAMP domain J4N42_10125 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_10130 PF01594 AI-2E family transporter J4N42_10135 PF01206 Sulfurtransferase TusA J4N42_10140 PF01435 Peptidase family M48 J4N42_10140 PF13181 Tetratricopeptide repeat J4N42_10145 PF03960 ArsC family J4N42_10150 PF03358 NADPH-dependent FMN reductase J4N42_10165 PF00860 Permease family J4N42_10170 PF04073 Aminoacyl-tRNA editing domain J4N42_10175 PF02872 5'-nucleotidase, C-terminal domain J4N42_10175 PF00149 Calcineurin-like phosphoesterase J4N42_10180 PF00793 DAHP synthetase I family J4N42_10185 PF13369 Transglutaminase-like superfamily J4N42_10190 PF04247 Invasion gene expression up-regulator, SirB J4N42_10195 PF13847 Methyltransferase domain J4N42_10195 PF17827 PrmC N-terminal domain J4N42_10200 PF03462 PCRF domain J4N42_10200 PF00472 RF-1 domain J4N42_10205 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain J4N42_10205 PF01488 Shikimate / quinate 5-dehydrogenase J4N42_10205 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain J4N42_10210 PF03550 Outer membrane lipoprotein LolB J4N42_10215 PF00288 GHMP kinases N terminal domain J4N42_10215 PF08544 GHMP kinases C terminal J4N42_10220 PF14572 Phosphoribosyl synthetase-associated domain J4N42_10220 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase J4N42_10225 PF01195 Peptidyl-tRNA hydrolase J4N42_10230 PF01926 50S ribosome-binding GTPase J4N42_10230 PF06071 Protein of unknown function (DUF933) J4N42_10310 PF00700 Bacterial flagellin C-terminal helical region J4N42_10310 PF07196 Flagellin hook IN motif J4N42_10310 PF00669 Bacterial flagellin N-terminal helical region J4N42_10315 PF00700 Bacterial flagellin C-terminal helical region J4N42_10315 PF07196 Flagellin hook IN motif J4N42_10315 PF00669 Bacterial flagellin N-terminal helical region J4N42_10320 PF00700 Bacterial flagellin C-terminal helical region J4N42_10320 PF00669 Bacterial flagellin N-terminal helical region J4N42_10325 PF07196 Flagellin hook IN motif J4N42_10325 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N42_10330 PF10135 Rod binding protein J4N42_10330 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase J4N42_10335 PF02119 Flagellar P-ring protein J4N42_10345 PF00460 Flagella basal body rod protein J4N42_10345 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N42_10350 PF00460 Flagella basal body rod protein J4N42_10350 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N42_10355 PF07559 Flagellar basal body protein FlaE J4N42_10355 PF00460 Flagella basal body rod protein J4N42_10355 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N42_10360 PF03963 Flagellar hook capping protein - N-terminal region J4N42_10360 PF13860 FlgD Ig-like domain J4N42_10360 PF13861 FlgD Tudor-like domain J4N42_10365 PF00460 Flagella basal body rod protein J4N42_10365 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N42_10370 PF00460 Flagella basal body rod protein J4N42_10375 PF03705 CheR methyltransferase, all-alpha domain J4N42_10375 PF01739 CheR methyltransferase, SAM binding domain J4N42_10380 PF01584 CheW-like domain J4N42_10380 PF00072 Response regulator receiver domain J4N42_10425 PF00749 tRNA synthetases class I (E and Q), catalytic domain J4N42_10430 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) J4N42_10435 PF13609 Gram-negative porin J4N42_10440 PF00403 Heavy-metal-associated domain J4N42_10455 PF03173 Putative carbohydrate binding domain J4N42_10455 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain J4N42_10455 PF00728 Glycosyl hydrolase family 20, catalytic domain J4N42_10455 PF02838 Glycosyl hydrolase family 20, domain 2 J4N42_10480 PF01713 Smr domain J4N42_10485 PF00849 RNA pseudouridylate synthase J4N42_10485 PF01479 S4 domain J4N42_10495 PF00586 AIR synthase related protein, N-terminal domain J4N42_10495 PF02769 AIR synthase related protein, C-terminal domain J4N42_10500 PF00551 Formyl transferase J4N42_10505 PF13230 Glutamine amidotransferases class-II J4N42_10510 PF13580 SIS domain J4N42_10515 PF09317 Domain of unknown function (DUF1974) J4N42_10515 PF02770 Acyl-CoA dehydrogenase, middle domain J4N42_10515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J4N42_10515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J4N42_10525 PF00929 Exonuclease J4N42_10530 PF00075 RNase H J4N42_10535 PF08241 Methyltransferase domain J4N42_10540 PF16123 Hydroxyacylglutathione hydrolase C-terminus J4N42_10540 PF00753 Metallo-beta-lactamase superfamily J4N42_10545 PF01464 Transglycosylase SLT domain J4N42_10545 PF01476 LysM domain J4N42_10555 PF03372 Endonuclease/Exonuclease/phosphatase family J4N42_10560 PF00543 Nitrogen regulatory protein P-II J4N42_10565 PF00034 Cytochrome c J4N42_10570 PF01171 PP-loop family J4N42_10570 PF09179 TilS substrate binding domain J4N42_10570 PF11734 TilS substrate C-terminal domain J4N42_10575 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit J4N42_10580 PF01336 OB-fold nucleic acid binding domain J4N42_10580 PF07733 Bacterial DNA polymerase III alpha NTPase domain J4N42_10580 PF14579 Helix-hairpin-helix motif J4N42_10580 PF02811 PHP domain J4N42_10580 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J4N42_10585 PF01351 Ribonuclease HII J4N42_10590 PF02684 Lipid-A-disaccharide synthetase J4N42_10595 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 J4N42_10595 PF00132 Bacterial transferase hexapeptide (six repeats) J4N42_10600 PF07977 FabA-like domain J4N42_10605 PF00132 Bacterial transferase hexapeptide (six repeats) J4N42_10605 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD J4N42_10610 PF03938 Outer membrane protein (OmpH-like) J4N42_10615 PF01103 Surface antigen J4N42_10615 PF07244 Surface antigen variable number repeat J4N42_10620 PF17820 PDZ domain J4N42_10620 PF02163 Peptidase family M50 J4N42_10625 PF13288 DXP reductoisomerase C-terminal domain J4N42_10625 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain J4N42_10625 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase J4N42_10635 PF01255 Putative undecaprenyl diphosphate synthase J4N42_10640 PF01765 Ribosome recycling factor J4N42_10645 PF00696 Amino acid kinase family J4N42_10650 PF00889 Elongation factor TS J4N42_10655 PF00318 Ribosomal protein S2 J4N42_10660 PF00557 Metallopeptidase family M24 J4N42_10670 PF11944 Protein of unknown function (DUF3461) J4N42_10675 PF04608 Phosphatidylglycerophosphatase A J4N42_10680 PF00586 AIR synthase related protein, N-terminal domain J4N42_10680 PF02769 AIR synthase related protein, C-terminal domain J4N42_10685 PF01029 NusB family J4N42_10690 PF00885 6,7-dimethyl-8-ribityllumazine synthase J4N42_10700 PF00677 Lumazine binding domain J4N42_10705 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J4N42_10705 PF01872 RibD C-terminal domain J4N42_10710 PF03477 ATP cone domain J4N42_10720 PF00171 Aldehyde dehydrogenase family J4N42_10725 PF00696 Amino acid kinase family J4N42_10725 PF01472 PUA domain J4N42_10730 PF07417 Sigma factor-binding transcriptional regulator Crl J4N42_10735 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) J4N42_10740 PF00156 Phosphoribosyl transferase domain J4N42_10745 PF00860 Permease family J4N42_10750 PF07687 Peptidase dimerisation domain J4N42_10750 PF01546 Peptidase family M20/M25/M40 J4N42_10760 PF08443 RimK-like ATP-grasp domain J4N42_10760 PF18030 RimK PreATP-grasp domain J4N42_10765 PF18030 RimK PreATP-grasp domain J4N42_10765 PF08443 RimK-like ATP-grasp domain J4N42_10775 PF00209 Sodium:neurotransmitter symporter family J4N42_10780 PF00041 Fibronectin type III domain J4N42_10780 PF00704 Glycosyl hydrolases family 18 J4N42_10790 PF01272 Transcription elongation factor, GreA/GreB, C-term J4N42_10790 PF03449 Transcription elongation factor, N-terminal J4N42_10795 PF00270 DEAD/DEAH box helicase J4N42_10795 PF00271 Helicase conserved C-terminal domain J4N42_10795 PF00570 HRDC domain J4N42_10795 PF16124 RecQ zinc-binding J4N42_10795 PF09382 RQC domain J4N42_10800 PF00817 impB/mucB/samB family J4N42_10800 PF11799 impB/mucB/samB family C-terminal domain J4N42_10800 PF11798 IMS family HHH motif J4N42_10805 PF00990 Diguanylate cyclase, GGDEF domain J4N42_10805 PF00072 Response regulator receiver domain J4N42_10815 PF02424 ApbE family J4N42_10820 PF00970 Oxidoreductase FAD-binding domain J4N42_10820 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N42_10820 PF00175 Oxidoreductase NAD-binding domain J4N42_10825 PF02508 Rnf-Nqr subunit, membrane protein J4N42_10830 PF02508 Rnf-Nqr subunit, membrane protein J4N42_10835 PF04205 FMN-binding domain J4N42_10840 PF03116 NQR2, RnfD, RnfE family J4N42_10845 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) J4N42_10845 PF11973 NQRA C-terminal domain J4N42_10850 PF01722 BolA-like protein J4N42_10855 PF05175 Methyltransferase small domain J4N42_10865 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J4N42_10870 PF07690 Major Facilitator Superfamily J4N42_10875 PF03502 Nucleoside-specific channel-forming protein, Tsx J4N42_10880 PF02558 Ketopantoate reductase PanE/ApbA J4N42_10880 PF08546 Ketopantoate reductase PanE/ApbA C terminal J4N42_10885 PF01965 DJ-1/PfpI family J4N42_10890 PF00266 Aminotransferase class-V J4N42_10895 PF02657 Fe-S metabolism associated domain J4N42_10900 PF00899 ThiF family J4N42_10905 PF03562 MltA specific insert domain J4N42_10905 PF06725 3D domain J4N42_10915 PF00696 Amino acid kinase family J4N42_10915 PF00583 Acetyltransferase (GNAT) family J4N42_10925 PF13538 UvrD-like helicase C-terminal domain J4N42_10930 PF12705 PD-(D/E)XK nuclease superfamily J4N42_10930 PF00580 UvrD/REP helicase N-terminal domain J4N42_10930 PF13361 UvrD-like helicase C-terminal domain J4N42_10935 PF17946 RecC C-terminal domain J4N42_10945 PF03466 LysR substrate binding domain J4N42_10945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_10950 PF07130 YebG protein J4N42_10955 PF03932 CutC family J4N42_10960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_10960 PF03466 LysR substrate binding domain J4N42_10975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_10975 PF03466 LysR substrate binding domain J4N42_10995 PF01895 PhoU domain J4N42_11000 PF00005 ABC transporter J4N42_11005 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_11010 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_11015 PF02503 Polyphosphate kinase middle domain J4N42_11015 PF13090 Polyphosphate kinase C-terminal domain 2 J4N42_11015 PF17941 Polyphosphate kinase C-terminal domain 1 J4N42_11015 PF13089 Polyphosphate kinase N-terminal domain J4N42_11020 PF02541 Ppx/GppA phosphatase family J4N42_11025 PF12849 PBP superfamily domain J4N42_11030 PF11808 Phosphate regulon sensor protein PhoR J4N42_11030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_11030 PF00512 His Kinase A (phospho-acceptor) domain J4N42_11030 PF00989 PAS fold J4N42_11035 PF00072 Response regulator receiver domain J4N42_11035 PF00486 Transcriptional regulatory protein, C terminal J4N42_11040 PF04381 Putative exonuclease, RdgC J4N42_11045 PF16325 Peptidase family U32 C-terminal domain J4N42_11045 PF01136 Peptidase family U32 J4N42_11050 PF12838 4Fe-4S dicluster domain J4N42_11055 PF03411 Penicillin-insensitive murein endopeptidase J4N42_11065 PF02355 Protein export membrane protein J4N42_11065 PF07549 SecD/SecF GG Motif J4N42_11070 PF02355 Protein export membrane protein J4N42_11070 PF13721 SecD export protein N-terminal TM region J4N42_11070 PF07549 SecD/SecF GG Motif J4N42_11075 PF02699 Preprotein translocase subunit J4N42_11080 PF01702 Queuine tRNA-ribosyltransferase J4N42_11085 PF02547 Queuosine biosynthesis protein J4N42_11090 PF00571 CBS domain J4N42_11095 PF00463 Isocitrate lyase family J4N42_11100 PF01274 Malate synthase J4N42_11105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_11105 PF03466 LysR substrate binding domain J4N42_11110 PF10417 C-terminal domain of 1-Cys peroxiredoxin J4N42_11110 PF00578 AhpC/TSA family J4N42_11115 PF01914 MarC family integral membrane protein J4N42_11120 PF14602 Hexapeptide repeat of succinyl-transferase J4N42_11120 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle J4N42_11125 PF00230 Major intrinsic protein J4N42_11130 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J4N42_11130 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J4N42_11135 PF08220 DeoR-like helix-turn-helix domain J4N42_11135 PF00455 DeoR C terminal sensor domain J4N42_11140 PF01266 FAD dependent oxidoreductase J4N42_11140 PF16901 C-terminal domain of alpha-glycerophosphate oxidase J4N42_11155 PF01588 Putative tRNA binding domain J4N42_11160 PF00356 Bacterial regulatory proteins, lacI family J4N42_11175 PF00356 Bacterial regulatory proteins, lacI family J4N42_11180 PF01263 Aldose 1-epimerase J4N42_11185 PF10509 Galactokinase galactose-binding signature J4N42_11185 PF08544 GHMP kinases C terminal J4N42_11185 PF00288 GHMP kinases N terminal domain J4N42_11190 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain J4N42_11190 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain J4N42_11195 PF16363 GDP-mannose 4,6 dehydratase J4N42_11200 PF00356 Bacterial regulatory proteins, lacI family J4N42_11205 PF02837 Glycosyl hydrolases family 2, sugar binding domain J4N42_11205 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J4N42_11205 PF02929 Beta galactosidase small chain J4N42_11205 PF16353 Domain of unknown function(DUF4981) J4N42_11205 PF00703 Glycosyl hydrolases family 2 J4N42_11210 PF04074 YhcH/YjgK/YiaL J4N42_11215 PF13520 Amino acid permease J4N42_11225 PF06719 AraC-type transcriptional regulator N-terminus J4N42_11225 PF12833 Helix-turn-helix domain J4N42_11235 PF01204 Trehalase J4N42_11240 PF16874 Glycosyl hydrolase family 36 C-terminal domain J4N42_11240 PF16875 Glycosyl hydrolase family 36 N-terminal domain J4N42_11245 PF02929 Beta galactosidase small chain J4N42_11245 PF16353 Domain of unknown function(DUF4981) J4N42_11245 PF00703 Glycosyl hydrolases family 2 J4N42_11245 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J4N42_11245 PF02837 Glycosyl hydrolases family 2, sugar binding domain J4N42_11255 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_11260 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_11265 PF00005 ABC transporter J4N42_11265 PF17912 MalK OB fold domain J4N42_11270 PF01554 MatE J4N42_11280 PF03466 LysR substrate binding domain J4N42_11280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_11305 PF00437 Type II/IV secretion system protein J4N42_11320 PF13629 Pilus formation protein N terminal region J4N42_11320 PF00263 Bacterial type II and III secretion system protein J4N42_11320 PF04972 BON domain J4N42_11350 PF12833 Helix-turn-helix domain J4N42_11355 PF00501 AMP-binding enzyme J4N42_11365 PF03466 LysR substrate binding domain J4N42_11365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_11375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_11375 PF03466 LysR substrate binding domain J4N42_11380 PF00679 Elongation factor G C-terminus J4N42_11380 PF14492 Elongation Factor G, domain II J4N42_11380 PF03764 Elongation factor G, domain IV J4N42_11380 PF00009 Elongation factor Tu GTP binding domain J4N42_11380 PF03144 Elongation factor Tu domain 2 J4N42_11385 PF18073 Rubredoxin metal binding domain J4N42_11395 PF18429 Domain of unknown function (DUF5609) J4N42_11405 PF01048 Phosphorylase superfamily J4N42_11410 PF01676 Metalloenzyme superfamily J4N42_11415 PF00591 Glycosyl transferase family, a/b domain J4N42_11415 PF02885 Glycosyl transferase family, helical bundle domain J4N42_11415 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain J4N42_11420 PF01791 DeoC/LacD family aldolase J4N42_11425 PF07670 Nucleoside recognition J4N42_11425 PF07662 Na+ dependent nucleoside transporter C-terminus J4N42_11425 PF01773 Na+ dependent nucleoside transporter N-terminus J4N42_11430 PF01026 TatD related DNase J4N42_11440 PF03883 Peroxide stress protein YaaA J4N42_11445 PF01235 Sodium:alanine symporter family J4N42_11460 PF03167 Uracil DNA glycosylase superfamily J4N42_11465 PF01261 Xylose isomerase-like TIM barrel J4N42_11470 PF01228 Glycine radical J4N42_11475 PF03358 NADPH-dependent FMN reductase J4N42_11480 PF14821 Threonine synthase N terminus J4N42_11480 PF00291 Pyridoxal-phosphate dependent enzyme J4N42_11485 PF08544 GHMP kinases C terminal J4N42_11485 PF00288 GHMP kinases N terminal domain J4N42_11490 PF01842 ACT domain J4N42_11490 PF00696 Amino acid kinase family J4N42_11490 PF00742 Homoserine dehydrogenase J4N42_11490 PF13840 ACT domain J4N42_11490 PF03447 Homoserine dehydrogenase, NAD binding domain J4N42_11500 PF03737 Aldolase/RraA J4N42_11510 PF00072 Response regulator receiver domain J4N42_11510 PF00486 Transcriptional regulatory protein, C terminal J4N42_11520 PF00989 PAS fold J4N42_11520 PF18415 Histidine kinase receptor ArcB trans-membrane domain J4N42_11520 PF00072 Response regulator receiver domain J4N42_11520 PF00512 His Kinase A (phospho-acceptor) domain J4N42_11520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_11520 PF01627 Hpt domain J4N42_11525 PF00563 EAL domain J4N42_11525 PF01590 GAF domain J4N42_11525 PF00990 Diguanylate cyclase, GGDEF domain J4N42_11525 PF00360 Phytochrome region J4N42_11530 PF04055 Radical SAM superfamily J4N42_11530 PF16199 Radical_SAM C-terminal domain J4N42_11535 PF01493 GXGXG motif J4N42_11535 PF01645 Conserved region in glutamate synthase J4N42_11535 PF04898 Glutamate synthase central domain J4N42_11535 PF00310 Glutamine amidotransferases class-II J4N42_11540 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N42_11540 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster J4N42_11545 PF01493 GXGXG motif J4N42_11545 PF01645 Conserved region in glutamate synthase J4N42_11545 PF04898 Glutamate synthase central domain J4N42_11545 PF00310 Glutamine amidotransferases class-II J4N42_11550 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster J4N42_11550 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N42_11560 PF09157 Pseudouridine synthase II TruB, C-terminal J4N42_11560 PF16198 tRNA pseudouridylate synthase B C-terminal domain J4N42_11560 PF01509 TruB family pseudouridylate synthase (N terminal domain) J4N42_11565 PF02033 Ribosome-binding factor A J4N42_11570 PF11987 Translation-initiation factor 2 J4N42_11570 PF00009 Elongation factor Tu GTP binding domain J4N42_11570 PF08364 Bacterial translation initiation factor IF-2 associated region J4N42_11570 PF04760 Translation initiation factor IF-2, N-terminal region J4N42_11575 PF00575 S1 RNA binding domain J4N42_11575 PF08529 NusA N-terminal domain J4N42_11575 PF13184 NusA-like KH domain J4N42_11580 PF02576 RimP N-terminal domain J4N42_11580 PF17384 RimP C-terminal SH3 domain J4N42_11595 PF03840 Preprotein translocase SecG subunit J4N42_11600 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J4N42_11600 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J4N42_11600 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J4N42_11600 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J4N42_11605 PF00809 Pterin binding enzyme J4N42_11610 PF00004 ATPase family associated with various cellular activities (AAA) J4N42_11610 PF17862 AAA+ lid domain J4N42_11610 PF06480 FtsH Extracellular J4N42_11610 PF01434 Peptidase family M41 J4N42_11615 PF01728 FtsJ-like methyltransferase J4N42_11620 PF01985 CRS1 / YhbY (CRM) domain J4N42_11625 PF03449 Transcription elongation factor, N-terminal J4N42_11625 PF01272 Transcription elongation factor, GreA/GreB, C-term J4N42_11630 PF13609 Gram-negative porin J4N42_11635 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family J4N42_11645 PF04304 Protein of unknown function (DUF454) J4N42_11650 PF00579 tRNA synthetases class I (W and Y) J4N42_11655 PF01476 LysM domain J4N42_11655 PF08525 Opacity-associated protein A N-terminal motif J4N42_11655 PF01551 Peptidase family M23 J4N42_11660 PF00873 AcrB/AcrD/AcrF family J4N42_11665 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N42_11670 PF01521 Iron-sulphur cluster biosynthesis J4N42_11675 PF00202 Aminotransferase class-III J4N42_11680 PF01594 AI-2E family transporter J4N42_11685 PF05175 Methyltransferase small domain J4N42_11685 PF08468 Methyltransferase small domain N-terminal J4N42_11690 PF00512 His Kinase A (phospho-acceptor) domain J4N42_11690 PF09308 LuxQ, periplasmic J4N42_11690 PF00072 Response regulator receiver domain J4N42_11690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_11695 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N42_11700 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_11705 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_11705 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N42_11710 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N42_11710 PF00005 ABC transporter J4N42_11715 PF00005 ABC transporter J4N42_11715 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N42_11725 PF01869 BadF/BadG/BcrA/BcrD ATPase family J4N42_11730 PF02838 Glycosyl hydrolase family 20, domain 2 J4N42_11730 PF00728 Glycosyl hydrolase family 20, catalytic domain J4N42_11735 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain J4N42_11735 PF06165 Glycosyltransferase family 36 J4N42_11740 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J4N42_11740 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J4N42_11740 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J4N42_11740 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J4N42_11745 PF08402 TOBE domain J4N42_11745 PF00005 ABC transporter J4N42_11755 PF13416 Bacterial extracellular solute-binding protein J4N42_11760 PF13098 Thioredoxin-like domain J4N42_11760 PF10411 Disulfide bond isomerase protein N-terminus J4N42_11765 PF00909 Ammonium Transporter Family J4N42_11770 PF00543 Nitrogen regulatory protein P-II J4N42_11775 PF06062 Uncharacterised protein family (UPF0231) J4N42_11780 PF00330 Aconitase family (aconitate hydratase) J4N42_11780 PF06434 Aconitate hydratase 2 N-terminus J4N42_11780 PF11791 Aconitate B N-terminal domain J4N42_11785 PF01734 Patatin-like phospholipase J4N42_11790 PF14814 Bifunctional transglycosylase second domain J4N42_11790 PF00905 Penicillin binding protein transpeptidase domain J4N42_11790 PF00912 Transglycosylase J4N42_11795 PF04408 Helicase associated domain (HA2) J4N42_11795 PF00271 Helicase conserved C-terminal domain J4N42_11795 PF08482 ATP-dependent helicase C-terminal J4N42_11795 PF00270 DEAD/DEAH box helicase J4N42_11800 PF03749 Sugar fermentation stimulation protein RE domain J4N42_11800 PF17746 SfsA N-terminal OB domain J4N42_11805 PF01258 Prokaryotic dksA/traR C4-type zinc finger J4N42_11810 PF00749 tRNA synthetases class I (E and Q), catalytic domain J4N42_11815 PF01743 Poly A polymerase head domain J4N42_11815 PF12626 Polymerase A arginine-rich C-terminus J4N42_11815 PF12627 Probable RNA and SrmB- binding site of polymerase A J4N42_11820 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J4N42_11825 PF02548 Ketopantoate hydroxymethyltransferase J4N42_11830 PF02569 Pantoate-beta-alanine ligase J4N42_11835 PF01061 ABC-2 type transporter J4N42_11840 PF00005 ABC transporter J4N42_11845 PF01740 STAS domain J4N42_11845 PF00916 Sulfate permease family J4N42_11850 PF00484 Carbonic anhydrase J4N42_11855 PF00156 Phosphoribosyl transferase domain J4N42_11860 PF00440 Bacterial regulatory proteins, tetR family J4N42_11865 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4N42_11865 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N42_11870 PF02817 e3 binding domain J4N42_11870 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J4N42_11870 PF00364 Biotin-requiring enzyme J4N42_11875 PF17831 Pyruvate dehydrogenase E1 component middle domain J4N42_11875 PF00456 Transketolase, thiamine diphosphate binding domain J4N42_11880 PF00392 Bacterial regulatory proteins, gntR family J4N42_11880 PF07729 FCD domain J4N42_11885 PF17768 RecJ OB domain J4N42_11885 PF02272 DHHA1 domain J4N42_11885 PF01368 DHH family J4N42_11890 PF13098 Thioredoxin-like domain J4N42_11890 PF10411 Disulfide bond isomerase protein N-terminus J4N42_11895 PF02899 Phage integrase, N-terminal SAM-like domain J4N42_11895 PF00589 Phage integrase family J4N42_11900 PF00258 Flavodoxin J4N42_11905 PF01510 N-acetylmuramoyl-L-alanine amidase J4N42_11910 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain J4N42_11910 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain J4N42_11915 PF07963 Prokaryotic N-terminal methylation motif J4N42_11915 PF00114 Pilin (bacterial filament) J4N42_11920 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J4N42_11920 PF00437 Type II/IV secretion system protein J4N42_11925 PF00482 Type II secretion system (T2SS), protein F J4N42_11930 PF06750 Bacterial Peptidase A24 N-terminal domain J4N42_11930 PF01478 Type IV leader peptidase family J4N42_11935 PF01121 Dephospho-CoA kinase J4N42_11940 PF07072 Cell division protein J4N42_11945 PF03884 DNA gyrase inhibitor YacG J4N42_11950 PF03952 Enolase, N-terminal domain J4N42_11950 PF00113 Enolase, C-terminal TIM barrel domain J4N42_11955 PF00117 Glutamine amidotransferase class-I J4N42_11955 PF06418 CTP synthase N-terminus J4N42_11960 PF03819 MazG nucleotide pyrophosphohydrolase domain J4N42_11965 PF02824 TGS domain J4N42_11965 PF04607 Region found in RelA / SpoT proteins J4N42_11965 PF13291 ACT domain J4N42_11970 PF05958 tRNA (Uracil-5-)-methyltransferase J4N42_11970 PF01938 TRAM domain J4N42_11975 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J4N42_11975 PF00072 Response regulator receiver domain J4N42_11975 PF00512 His Kinase A (phospho-acceptor) domain J4N42_11975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_11975 PF00672 HAMP domain J4N42_11975 PF01627 Hpt domain J4N42_11980 PF00990 Diguanylate cyclase, GGDEF domain J4N42_11980 PF03707 Bacterial signalling protein N terminal repeat J4N42_11980 PF00563 EAL domain J4N42_11995 PF01648 4'-phosphopantetheinyl transferase superfamily J4N42_12000 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ J4N42_12005 PF11967 Recombination protein O N terminal J4N42_12005 PF02565 Recombination protein O C terminal J4N42_12010 PF07650 KH domain J4N42_12010 PF01926 50S ribosome-binding GTPase J4N42_12015 PF14622 Ribonuclease-III-like J4N42_12015 PF00035 Double-stranded RNA binding motif J4N42_12020 PF10502 Signal peptidase, peptidase S26 J4N42_12025 PF00679 Elongation factor G C-terminus J4N42_12025 PF00009 Elongation factor Tu GTP binding domain J4N42_12025 PF03144 Elongation factor Tu domain 2 J4N42_12025 PF06421 GTP-binding protein LepA C-terminus J4N42_12035 PF17188 MucB/RseB C-terminal domain J4N42_12035 PF03888 MucB/RseB N-terminal domain J4N42_12040 PF03872 Anti sigma-E protein RseA, N-terminal domain J4N42_12040 PF03873 Anti sigma-E protein RseA, C-terminal domain J4N42_12045 PF04542 Sigma-70 region 2 J4N42_12045 PF08281 Sigma-70, region 4 J4N42_12050 PF00890 FAD binding domain J4N42_12050 PF02910 Fumarate reductase flavoprotein C-term J4N42_12060 PF03937 Flavinator of succinate dehydrogenase J4N42_12080 PF01494 FAD binding domain J4N42_12085 PF01494 FAD binding domain J4N42_12090 PF03695 Uncharacterised protein family (UPF0149) J4N42_12095 PF05164 Cell division protein ZapA J4N42_12105 PF01812 5-formyltetrahydrofolate cyclo-ligase family J4N42_12110 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) J4N42_12115 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N42_12115 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J4N42_12115 PF01842 ACT domain J4N42_12120 PF10369 Small subunit of acetolactate synthase J4N42_12125 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J4N42_12125 PF00205 Thiamine pyrophosphate enzyme, central domain J4N42_12125 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J4N42_12130 PF00501 AMP-binding enzyme J4N42_12135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_12135 PF03466 LysR substrate binding domain J4N42_12145 PF01569 PAP2 superfamily J4N42_12150 PF00873 AcrB/AcrD/AcrF family J4N42_12160 PF00440 Bacterial regulatory proteins, tetR family J4N42_12160 PF13977 BetI-type transcriptional repressor, C-terminal J4N42_12165 PF00682 HMGL-like J4N42_12165 PF08502 LeuA allosteric (dimerisation) domain J4N42_12170 PF00180 Isocitrate/isopropylmalate dehydrogenase J4N42_12175 PF00330 Aconitase family (aconitate hydratase) J4N42_12180 PF00694 Aconitase C-terminal domain J4N42_12225 PF00072 Response regulator receiver domain J4N42_12250 PF03739 Lipopolysaccharide export system permease LptF/LptG J4N42_12255 PF03739 Lipopolysaccharide export system permease LptF/LptG J4N42_12260 PF00883 Cytosol aminopeptidase family, catalytic domain J4N42_12260 PF02789 Cytosol aminopeptidase family, N-terminal domain J4N42_12265 PF04364 DNA polymerase III chi subunit, HolC J4N42_12270 PF10458 Valyl tRNA synthetase tRNA binding arm J4N42_12270 PF00133 tRNA synthetases class I (I, L, M and V) J4N42_12270 PF08264 Anticodon-binding domain of tRNA J4N42_12280 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N42_12280 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J4N42_12285 PF00849 RNA pseudouridylate synthase J4N42_12295 PF18337 RapA N-terminal Tudor like domain J4N42_12295 PF12137 RNA polymerase recycling family C-terminal J4N42_12295 PF00271 Helicase conserved C-terminal domain J4N42_12295 PF18339 RapA N-terminal Tudor like domain 1 J4N42_12295 PF00176 SNF2 family N-terminal domain J4N42_12300 PF13638 PIN domain J4N42_12300 PF02562 PhoH-like protein J4N42_12305 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J4N42_12305 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J4N42_12310 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J4N42_12310 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J4N42_12315 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain J4N42_12315 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain J4N42_12320 PF01042 Endoribonuclease L-PSP J4N42_12325 PF00226 DnaJ domain J4N42_12325 PF05099 Tellurite resistance protein TerB J4N42_12330 PF04453 LPS transport system D J4N42_12330 PF03968 OstA-like protein J4N42_12335 PF00639 PPIC-type PPIASE domain J4N42_12335 PF09312 SurA N-terminal domain J4N42_12340 PF04166 Pyridoxal phosphate biosynthetic protein PdxA J4N42_12345 PF00398 Ribosomal RNA adenine dimethylase J4N42_12350 PF04379 ApaG domain J4N42_12355 PF00149 Calcineurin-like phosphoesterase J4N42_12360 PF00186 Dihydrofolate reductase J4N42_12365 PF12821 Threonine/Serine exporter, ThrE J4N42_12370 PF06738 Putative threonine/serine exporter J4N42_12375 PF01926 50S ribosome-binding GTPase J4N42_12375 PF01018 GTP1/OBG J4N42_12380 PF01016 Ribosomal L27 protein J4N42_12385 PF00829 Ribosomal prokaryotic L21 protein J4N42_12390 PF00348 Polyprenyl synthetase J4N42_12395 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain J4N42_12395 PF00056 lactate/malate dehydrogenase, NAD binding domain J4N42_12400 PF01316 Arginine repressor, DNA binding domain J4N42_12400 PF02863 Arginine repressor, C-terminal domain J4N42_12405 PF16868 NMT1-like family J4N42_12415 PF00582 Universal stress protein family J4N42_12430 PF02779 Transketolase, pyrimidine binding domain J4N42_12430 PF02780 Transketolase, C-terminal domain J4N42_12430 PF00456 Transketolase, thiamine diphosphate binding domain J4N42_12435 PF02772 S-adenosylmethionine synthetase, central domain J4N42_12435 PF02773 S-adenosylmethionine synthetase, C-terminal domain J4N42_12435 PF00438 S-adenosylmethionine synthetase, N-terminal domain J4N42_12445 PF10263 SprT-like family J4N42_12445 PF17283 SprT-like zinc ribbon domain J4N42_12450 PF04231 Endonuclease I J4N42_12455 PF04452 RNA methyltransferase J4N42_12460 PF02951 Prokaryotic glutathione synthetase, N-terminal domain J4N42_12460 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain J4N42_12465 PF02622 Uncharacterized ACR, COG1678 J4N42_12470 PF03652 Holliday junction resolvase J4N42_12475 PF00437 Type II/IV secretion system protein J4N42_12480 PF00437 Type II/IV secretion system protein J4N42_12485 PF01168 Alanine racemase, N-terminal domain J4N42_12490 PF03807 NADP oxidoreductase coenzyme F420-dependent J4N42_12490 PF14748 Pyrroline-5-carboxylate reductase dimerisation J4N42_12495 PF02325 YGGT family J4N42_12500 PF02594 Uncharacterised ACR, YggU family COG1872 J4N42_12510 PF01725 Ham1 family J4N42_12515 PF06969 HemN C-terminal domain J4N42_12515 PF04055 Radical SAM superfamily J4N42_12520 PF02965 Vitamin B12 dependent methionine synthase, activation domain J4N42_12520 PF00809 Pterin binding enzyme J4N42_12520 PF02607 B12 binding domain J4N42_12520 PF02574 Homocysteine S-methyltransferase J4N42_12520 PF02310 B12 binding domain J4N42_12525 PF00999 Sodium/hydrogen exchanger family J4N42_12585 PF01507 Phosphoadenosine phosphosulfate reductase family J4N42_12590 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J4N42_12590 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain J4N42_12595 PF00667 FAD binding domain J4N42_12595 PF00258 Flavodoxin J4N42_12595 PF00175 Oxidoreductase NAD-binding domain J4N42_12615 PF01207 Dihydrouridine synthase (Dus) J4N42_12620 PF01475 Ferric uptake regulator family J4N42_12630 PF00342 Phosphoglucose isomerase J4N42_12635 PF01894 Uncharacterised protein family UPF0047 J4N42_12645 PF00842 Alanine racemase, C-terminal domain J4N42_12645 PF01168 Alanine racemase, N-terminal domain J4N42_12650 PF03796 DnaB-like helicase C terminal domain J4N42_12650 PF00772 DnaB-like helicase N terminal domain J4N42_12660 PF03948 Ribosomal protein L9, C-terminal domain J4N42_12660 PF01281 Ribosomal protein L9, N-terminal domain J4N42_12665 PF01084 Ribosomal protein S18 J4N42_12670 PF00436 Single-strand binding protein family J4N42_12675 PF01250 Ribosomal protein S6 J4N42_12680 PF00210 Ferritin-like domain J4N42_12685 PF04324 BFD-like [2Fe-2S] binding domain J4N42_12690 PF00009 Elongation factor Tu GTP binding domain J4N42_12690 PF03143 Elongation factor Tu C-terminal domain J4N42_12690 PF03144 Elongation factor Tu domain 2 J4N42_12695 PF00009 Elongation factor Tu GTP binding domain J4N42_12695 PF03144 Elongation factor Tu domain 2 J4N42_12695 PF03764 Elongation factor G, domain IV J4N42_12695 PF14492 Elongation Factor G, domain II J4N42_12695 PF00679 Elongation factor G C-terminus J4N42_12700 PF00177 Ribosomal protein S7p/S5e J4N42_12705 PF00164 Ribosomal protein S12/S23 J4N42_12710 PF04077 DsrH like protein J4N42_12715 PF02635 DsrE/DsrF-like family J4N42_12720 PF02635 DsrE/DsrF-like family J4N42_12725 PF08348 YheO-like PAS domain J4N42_12725 PF13309 HTH domain J4N42_12730 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N42_12730 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J4N42_12740 PF04102 SlyX J4N42_12745 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) J4N42_12750 PF01145 SPFH domain / Band 7 family J4N42_12755 PF01145 SPFH domain / Band 7 family J4N42_12755 PF12221 Bacterial membrane protein N terminal J4N42_12760 PF13167 GTP-binding GTPase N-terminal J4N42_12760 PF16360 GTP-binding GTPase Middle Region J4N42_12760 PF01926 50S ribosome-binding GTPase J4N42_12765 PF17209 Hfq protein J4N42_12775 PF08676 MutL C terminal dimerisation domain J4N42_12775 PF01119 DNA mismatch repair protein, C-terminal domain J4N42_12785 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE J4N42_12790 PF08331 Domain of unknown function (DUF1730) J4N42_12845 PF00929 Exonuclease J4N42_12850 PF03193 RsgA GTPase J4N42_12855 PF02666 Phosphatidylserine decarboxylase J4N42_12860 PF02080 TrkA-C domain J4N42_12860 PF03600 Citrate transporter J4N42_12870 PF06415 BPG-independent PGAM N-terminus (iPGM_N) J4N42_12870 PF01676 Metalloenzyme superfamily J4N42_12875 PF01551 Peptidase family M23 J4N42_12885 PF00440 Bacterial regulatory proteins, tetR family J4N42_12885 PF08360 QacR-like protein, C-terminal region J4N42_12890 PF01208 Uroporphyrinogen decarboxylase (URO-D) J4N42_12895 PF09297 NADH pyrophosphatase zinc ribbon domain J4N42_12895 PF00293 NUDIX domain J4N42_12900 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ J4N42_12905 PF04998 RNA polymerase Rpb1, domain 5 J4N42_12905 PF05000 RNA polymerase Rpb1, domain 4 J4N42_12905 PF04983 RNA polymerase Rpb1, domain 3 J4N42_12905 PF00623 RNA polymerase Rpb1, domain 2 J4N42_12905 PF04997 RNA polymerase Rpb1, domain 1 J4N42_12910 PF04560 RNA polymerase Rpb2, domain 7 J4N42_12910 PF00562 RNA polymerase Rpb2, domain 6 J4N42_12910 PF04565 RNA polymerase Rpb2, domain 3 J4N42_12910 PF04561 RNA polymerase Rpb2, domain 2 J4N42_12910 PF04563 RNA polymerase beta subunit J4N42_12910 PF10385 RNA polymerase beta subunit external 1 domain J4N42_12915 PF00542 Ribosomal protein L7/L12 C-terminal domain J4N42_12915 PF16320 Ribosomal protein L7/L12 dimerisation domain J4N42_12920 PF00466 Ribosomal protein L10 J4N42_12925 PF00687 Ribosomal protein L1p/L10e family J4N42_12930 PF00298 Ribosomal protein L11, RNA binding domain J4N42_12930 PF03946 Ribosomal protein L11, N-terminal domain J4N42_12935 PF02357 Transcription termination factor nusG J4N42_12935 PF00467 KOW motif J4N42_12940 PF00584 SecE/Sec61-gamma subunits of protein translocation complex J4N42_12945 PF03143 Elongation factor Tu C-terminal domain J4N42_12945 PF03144 Elongation factor Tu domain 2 J4N42_12945 PF00009 Elongation factor Tu GTP binding domain J4N42_12970 PF00485 Phosphoribulokinase / Uridine kinase family J4N42_12985 PF00121 Triosephosphate isomerase J4N42_12995 PF01554 MatE J4N42_13000 PF03737 Aldolase/RraA J4N42_13005 PF01040 UbiA prenyltransferase family J4N42_13010 PF01132 Elongation factor P (EF-P) OB domain J4N42_13010 PF09285 Elongation factor P, C-terminal J4N42_13010 PF08207 Elongation factor P (EF-P) KOW-like domain J4N42_13015 PF04055 Radical SAM superfamily J4N42_13020 PF02308 MgtC family J4N42_13025 PF03605 Anaerobic c4-dicarboxylate membrane transporter J4N42_13030 PF00365 Phosphofructokinase J4N42_13035 PF16916 Dimerisation domain of Zinc Transporter J4N42_13035 PF01545 Cation efflux family J4N42_13045 PF00486 Transcriptional regulatory protein, C terminal J4N42_13045 PF00072 Response regulator receiver domain J4N42_13050 PF00512 His Kinase A (phospho-acceptor) domain J4N42_13050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_13050 PF16527 Two-component sensor protein CpxA, periplasmic domain J4N42_13050 PF00672 HAMP domain J4N42_13055 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain J4N42_13055 PF02777 Iron/manganese superoxide dismutases, C-terminal domain J4N42_13060 PF00588 SpoU rRNA Methylase family J4N42_13065 PF04186 FxsA cytoplasmic membrane protein J4N42_13070 PF10415 Fumarase C C-terminus J4N42_13070 PF00206 Lyase J4N42_13075 PF03605 Anaerobic c4-dicarboxylate membrane transporter J4N42_13080 PF03606 C4-dicarboxylate anaerobic carrier J4N42_13090 PF00696 Amino acid kinase family J4N42_13095 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J4N42_13095 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J4N42_13100 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J4N42_13100 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J4N42_13105 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain J4N42_13105 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain J4N42_13110 PF02863 Arginine repressor, C-terminal domain J4N42_13110 PF01316 Arginine repressor, DNA binding domain J4N42_13115 PF02683 Cytochrome C biogenesis protein transmembrane region J4N42_13115 PF11412 Disulphide bond corrector protein DsbC J4N42_13120 PF00196 Bacterial regulatory proteins, luxR family J4N42_13120 PF00072 Response regulator receiver domain J4N42_13125 PF02080 TrkA-C domain J4N42_13125 PF00999 Sodium/hydrogen exchanger family J4N42_13125 PF03471 Transporter associated domain J4N42_13135 PF00474 Sodium:solute symporter family J4N42_13145 PF00925 GTP cyclohydrolase II J4N42_13145 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase J4N42_13155 PF03547 Membrane transport protein J4N42_13160 PF00121 Triosephosphate isomerase J4N42_13165 PF02734 DAK2 domain J4N42_13170 PF02733 Dak1 domain J4N42_13175 PF04166 Pyridoxal phosphate biosynthetic protein PdxA J4N42_13180 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component J4N42_13180 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J4N42_13190 PF03480 Bacterial extracellular solute-binding protein, family 7 J4N42_13195 PF02502 Ribose/Galactose Isomerase J4N42_13200 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded J4N42_13205 PF13936 Helix-turn-helix domain J4N42_13205 PF04198 Putative sugar-binding domain J4N42_13210 PF01627 Hpt domain J4N42_13210 PF00512 His Kinase A (phospho-acceptor) domain J4N42_13210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_13210 PF00672 HAMP domain J4N42_13210 PF00072 Response regulator receiver domain J4N42_13215 PF12832 MFS_1 like family J4N42_13230 PF16177 Acetyl-coenzyme A synthetase N-terminus J4N42_13230 PF13193 AMP-binding enzyme C-terminal domain J4N42_13230 PF00501 AMP-binding enzyme J4N42_13235 PF01220 Dehydroquinase class II J4N42_13240 PF00364 Biotin-requiring enzyme J4N42_13245 PF00289 Biotin carboxylase, N-terminal domain J4N42_13245 PF02785 Biotin carboxylase C-terminal domain J4N42_13245 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J4N42_13255 PF01207 Dihydrouridine synthase (Dus) J4N42_13260 PF02954 Bacterial regulatory protein, Fis family J4N42_13265 PF00672 HAMP domain J4N42_13265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_13265 PF17200 Single Cache domain 2 J4N42_13270 PF13411 MerR HTH family regulatory protein J4N42_13275 PF02142 MGS-like domain J4N42_13275 PF01808 AICARFT/IMPCHase bienzyme J4N42_13280 PF02844 Phosphoribosylglycinamide synthetase, N domain J4N42_13280 PF02843 Phosphoribosylglycinamide synthetase, C domain J4N42_13280 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain J4N42_13290 PF00216 Bacterial DNA-binding protein J4N42_13295 PF00571 CBS domain J4N42_13295 PF01595 Cyclin M transmembrane N-terminal domain J4N42_13300 PF04222 Protein of unknown function (DUF416) J4N42_13305 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N42_13310 PF03167 Uracil DNA glycosylase superfamily J4N42_13390 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) J4N42_13395 PF01177 Asp/Glu/Hydantoin racemase J4N42_13405 PF07715 TonB-dependent Receptor Plug Domain J4N42_13405 PF00593 TonB dependent receptor J4N42_13410 PF05958 tRNA (Uracil-5-)-methyltransferase J4N42_13420 PF00440 Bacterial regulatory proteins, tetR family J4N42_13425 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N42_13425 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4N42_13430 PF01554 MatE J4N42_13435 PF04072 Leucine carboxyl methyltransferase J4N42_13440 PF01726 LexA DNA binding domain J4N42_13440 PF00717 Peptidase S24-like J4N42_13445 PF01219 Prokaryotic diacylglycerol kinase J4N42_13450 PF01553 Acyltransferase J4N42_13455 PF01040 UbiA prenyltransferase family J4N42_13460 PF04345 Chorismate lyase J4N42_13465 PF03748 Flagellar basal body-associated protein FliL J4N42_13470 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease J4N42_13470 PF01694 Rhomboid family J4N42_13475 PF00581 Rhodanese-like domain J4N42_13480 PF00140 Sigma-70 factor, region 1.2 J4N42_13480 PF04545 Sigma-70, region 4 J4N42_13480 PF04542 Sigma-70 region 2 J4N42_13485 PF18075 FtsX extracellular domain J4N42_13490 PF00005 ABC transporter J4N42_13495 PF00448 SRP54-type protein, GTPase domain J4N42_13495 PF02881 SRP54-type protein, helical bundle domain J4N42_13510 PF01914 MarC family integral membrane protein J4N42_13525 PF00857 Isochorismatase family J4N42_13535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_13535 PF03466 LysR substrate binding domain J4N42_13565 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J4N42_13565 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J4N42_13570 PF01022 Bacterial regulatory protein, arsR family J4N42_13575 PF00563 EAL domain J4N42_13575 PF08668 HDOD domain J4N42_13580 PF01810 LysE type translocator J4N42_13585 PF12146 Serine aminopeptidase, S33 J4N42_13605 PF03942 DTW domain J4N42_13610 PF13419 Haloacid dehalogenase-like hydrolase J4N42_13615 PF00589 Phage integrase family J4N42_13615 PF02899 Phage integrase, N-terminal SAM-like domain J4N42_13625 PF01678 Diaminopimelate epimerase J4N42_13630 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain J4N42_13630 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J4N42_13640 PF01491 Frataxin-like domain J4N42_13645 PF12633 Adenylate cyclase NT domain J4N42_13645 PF01295 Adenylate cyclase, class-I J4N42_13650 PF03900 Porphobilinogen deaminase, C-terminal domain J4N42_13650 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain J4N42_13655 PF02602 Uroporphyrinogen-III synthase HemD J4N42_13660 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase J4N42_13665 PF07219 HemY protein N-terminus J4N42_13705 PF00175 Oxidoreductase NAD-binding domain J4N42_13715 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase J4N42_13725 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N42_13725 PF07498 Rho termination factor, N-terminal domain J4N42_13725 PF07497 Rho termination factor, RNA-binding domain J4N42_13730 PF00085 Thioredoxin J4N42_13735 PF00270 DEAD/DEAH box helicase J4N42_13735 PF00271 Helicase conserved C-terminal domain J4N42_13740 PF02541 Ppx/GppA phosphatase family J4N42_13750 PF03741 Integral membrane protein TerC family J4N42_13750 PF03471 Transporter associated domain J4N42_13750 PF00571 CBS domain J4N42_13760 PF02592 Putative vitamin uptake transporter J4N42_13770 PF00270 DEAD/DEAH box helicase J4N42_13770 PF00271 Helicase conserved C-terminal domain J4N42_13770 PF00570 HRDC domain J4N42_13770 PF16124 RecQ zinc-binding J4N42_13770 PF09382 RQC domain J4N42_13775 PF00892 EamA-like transporter family J4N42_13785 PF01810 LysE type translocator J4N42_13795 PF08534 Redoxin J4N42_13800 PF13361 UvrD-like helicase C-terminal domain J4N42_13800 PF00580 UvrD/REP helicase N-terminal domain J4N42_13810 PF05114 Protein of unknown function (DUF692) J4N42_13825 PF01432 Peptidase family M3 J4N42_13830 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ J4N42_13840 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N42_13840 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4N42_13845 PF01081 KDPG and KHG aldolase J4N42_13850 PF02447 GntP family permease J4N42_13855 PF01202 Shikimate kinase J4N42_13860 PF00920 Dehydratase family J4N42_13865 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family J4N42_13865 PF00356 Bacterial regulatory proteins, lacI family J4N42_13870 PF00072 Response regulator receiver domain J4N42_13885 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_13885 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N42_13890 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_13895 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N42_13900 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N42_13900 PF00005 ABC transporter J4N42_13930 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J4N42_13935 PF13361 UvrD-like helicase C-terminal domain J4N42_13935 PF00580 UvrD/REP helicase N-terminal domain J4N42_13940 PF00440 Bacterial regulatory proteins, tetR family J4N42_13945 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N42_13950 PF00873 AcrB/AcrD/AcrF family J4N42_13955 PF04380 Membrane fusogenic activity J4N42_13960 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain J4N42_13960 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain J4N42_13965 PF03466 LysR substrate binding domain J4N42_13965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_13970 PF04055 Radical SAM superfamily J4N42_13970 PF06969 HemN C-terminal domain J4N42_13980 PF04220 Der GTPase activator (YihI) J4N42_13990 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J4N42_13995 PF01926 50S ribosome-binding GTPase J4N42_14000 PF00476 DNA polymerase family A J4N42_14000 PF01367 5'-3' exonuclease, C-terminal SAM fold J4N42_14000 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J4N42_14000 PF01612 3'-5' exonuclease J4N42_14010 PF00490 Delta-aminolevulinic acid dehydratase J4N42_14015 PF01026 TatD related DNase J4N42_14020 PF00902 Sec-independent protein translocase protein (TatC) J4N42_14025 PF02416 mttA/Hcf106 family J4N42_14030 PF02416 mttA/Hcf106 family J4N42_14035 PF03109 ABC1 family J4N42_14040 PF02036 SCP-2 sterol transfer family J4N42_14045 PF01209 ubiE/COQ5 methyltransferase family J4N42_14050 PF02646 RmuC family J4N42_14065 PF03707 Bacterial signalling protein N terminal repeat J4N42_14065 PF00990 Diguanylate cyclase, GGDEF domain J4N42_14065 PF00563 EAL domain J4N42_14080 PF10625 Universal stress protein B (UspB) J4N42_14085 PF00210 Ferritin-like domain J4N42_14090 PF00582 Universal stress protein family J4N42_14095 PF00892 EamA-like transporter family J4N42_14105 PF04445 Putative SAM-dependent methyltransferase J4N42_14110 PF08448 PAS fold J4N42_14110 PF00990 Diguanylate cyclase, GGDEF domain J4N42_14110 PF00563 EAL domain J4N42_14115 PF01037 Lrp/AsnC ligand binding domain J4N42_14125 PF07690 Major Facilitator Superfamily J4N42_14130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_14130 PF03466 LysR substrate binding domain J4N42_14135 PF00557 Metallopeptidase family M24 J4N42_14135 PF01321 Creatinase/Prolidase N-terminal domain J4N42_14135 PF00557 Metallopeptidase family M24 J4N42_14135 PF01321 Creatinase/Prolidase N-terminal domain J4N42_14140 PF06968 Biotin and Thiamin Synthesis associated domain J4N42_14140 PF04055 Radical SAM superfamily J4N42_14145 PF05690 Thiazole biosynthesis protein ThiG J4N42_14155 PF00899 ThiF family J4N42_14160 PF02581 Thiamine monophosphate synthase J4N42_14165 PF13667 ThiC-associated domain J4N42_14165 PF01964 Radical SAM ThiC family J4N42_14170 PF02537 CrcB-like protein, Camphor Resistance (CrcB) J4N42_14175 PF07731 Multicopper oxidase J4N42_14175 PF07732 Multicopper oxidase J4N42_14175 PF00394 Multicopper oxidase J4N42_14220 PF12724 Flavodoxin domain J4N42_14225 PF02386 Cation transport protein J4N42_14230 PF01205 Uncharacterized protein family UPF0029 J4N42_14230 PF09186 Domain of unknown function (DUF1949) J4N42_14235 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J4N42_14235 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J4N42_14235 PF00378 Enoyl-CoA hydratase/isomerase J4N42_14240 PF02803 Thiolase, C-terminal domain J4N42_14240 PF00108 Thiolase, N-terminal domain J4N42_14245 PF03466 LysR substrate binding domain J4N42_14245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_14250 PF07690 Major Facilitator Superfamily J4N42_14255 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N42_14260 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_14265 PF12804 MobA-like NTP transferase domain J4N42_14265 PF00132 Bacterial transferase hexapeptide (six repeats) J4N42_14270 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain J4N42_14270 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain J4N42_14275 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N42_14275 PF02874 ATP synthase alpha/beta family, beta-barrel domain J4N42_14280 PF00231 ATP synthase J4N42_14285 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N42_14285 PF00306 ATP synthase alpha/beta chain, C terminal domain J4N42_14285 PF02874 ATP synthase alpha/beta family, beta-barrel domain J4N42_14290 PF00213 ATP synthase delta (OSCP) subunit J4N42_14295 PF00430 ATP synthase B/B' CF(0) J4N42_14300 PF00137 ATP synthase subunit C J4N42_14305 PF00119 ATP synthase A chain J4N42_14310 PF03899 ATP synthase I chain J4N42_14315 PF17762 HTH domain found in ParB protein J4N42_14315 PF02195 ParB-like nuclease domain J4N42_14320 PF13614 AAA domain J4N42_14325 PF02527 rRNA small subunit methyltransferase G J4N42_14330 PF13932 GidA associated domain J4N42_14330 PF01134 Glucose inhibited division protein A J4N42_14335 PF00258 Flavodoxin J4N42_14340 PF01926 50S ribosome-binding GTPase J4N42_14340 PF12631 MnmE helical domain J4N42_14340 PF10396 GTP-binding protein TrmE N-terminus J4N42_14345 PF02096 60Kd inner membrane protein J4N42_14345 PF14849 YidC periplasmic domain J4N42_14350 PF01809 Putative membrane protein insertion efficiency factor J4N42_14355 PF00825 Ribonuclease P J4N42_14360 PF00468 Ribosomal protein L34 J4N42_14365 PF00005 ABC transporter J4N42_14370 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_14375 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N42_14380 PF13614 AAA domain J4N42_14380 PF18607 ParA helix turn helix domain J4N42_14385 PF08775 ParB family J4N42_14385 PF02195 ParB-like nuclease domain J4N42_14390 PF13718 GNAT acetyltransferase 2 J4N42_14390 PF05127 Helicase J4N42_14400 PF00072 Response regulator receiver domain J4N42_14400 PF00486 Transcriptional regulatory protein, C terminal J4N42_14405 PF01584 CheW-like domain J4N42_14405 PF09078 CheY binding J4N42_14405 PF02895 Signal transducing histidine kinase, homodimeric domain J4N42_14405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_14405 PF01627 Hpt domain J4N42_14410 PF01584 CheW-like domain J4N42_14415 PF01584 CheW-like domain J4N42_14420 PF02203 Tar ligand binding domain homologue J4N42_14420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_14420 PF00672 HAMP domain J4N42_14425 PF01739 CheR methyltransferase, SAM binding domain J4N42_14425 PF03705 CheR methyltransferase, all-alpha domain J4N42_14430 PF03975 CheD chemotactic sensory transduction J4N42_14435 PF01339 CheB methylesterase J4N42_14435 PF00072 Response regulator receiver domain J4N42_14440 PF02743 Cache domain J4N42_14440 PF00672 HAMP domain J4N42_14440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_14450 PF00072 Response regulator receiver domain J4N42_14450 PF00990 Diguanylate cyclase, GGDEF domain J4N42_14455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_14455 PF03466 LysR substrate binding domain J4N42_14470 PF12706 Beta-lactamase superfamily domain J4N42_14495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_14495 PF03466 LysR substrate binding domain J4N42_14520 PF00486 Transcriptional regulatory protein, C terminal J4N42_14520 PF00072 Response regulator receiver domain J4N42_14525 PF07689 KaiB domain J4N42_14525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_14525 PF00512 His Kinase A (phospho-acceptor) domain J4N42_14565 PF00232 Glycosyl hydrolase family 1 J4N42_14570 PF01418 Helix-turn-helix domain, rpiR family J4N42_14570 PF01380 SIS domain J4N42_14575 PF01380 SIS domain J4N42_14580 PF00367 phosphotransferase system, EIIB J4N42_14580 PF02378 Phosphotransferase system, EIIC J4N42_14585 PF00933 Glycosyl hydrolase family 3 N terminal domain J4N42_14585 PF01915 Glycosyl hydrolase family 3 C-terminal domain J4N42_14615 PF01810 LysE type translocator J4N42_14625 PF13460 NAD(P)H-binding J4N42_14630 PF00664 ABC transporter transmembrane region J4N42_14630 PF00005 ABC transporter J4N42_14645 PF00171 Aldehyde dehydrogenase family J4N42_14655 PF00465 Iron-containing alcohol dehydrogenase J4N42_14665 PF00884 Sulfatase J4N42_14670 PF04055 Radical SAM superfamily J4N42_14670 PF13186 Iron-sulfur cluster-binding domain J4N42_14675 PF00884 Sulfatase J4N42_14680 PF16925 Tetracyclin repressor-like, C-terminal domain J4N42_14680 PF00440 Bacterial regulatory proteins, tetR family J4N42_14730 PF03480 Bacterial extracellular solute-binding protein, family 7 J4N42_14765 PF00106 short chain dehydrogenase J4N42_14775 PF00875 DNA photolyase J4N42_14775 PF03441 FAD binding domain of DNA photolyase J4N42_14790 PF04542 Sigma-70 region 2 J4N42_14790 PF04545 Sigma-70, region 4 J4N42_14800 PF04717 Type VI secretion system, phage-baseplate injector J4N42_14820 PF01124 MAPEG family J4N42_14850 PF12697 Alpha/beta hydrolase family J4N42_14855 PF00939 Sodium:sulfate symporter transmembrane region J4N42_14860 PF13302 Acetyltransferase (GNAT) domain J4N42_14865 PF01966 HD domain J4N42_14870 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) J4N42_14875 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N42_14880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_14880 PF00672 HAMP domain J4N42_14880 PF12729 Four helix bundle sensory module for signal transduction J4N42_14885 PF00704 Glycosyl hydrolases family 18 J4N42_14885 PF08329 Chitinase A, N-terminal domain J4N42_14890 PF00392 Bacterial regulatory proteins, gntR family J4N42_14890 PF07702 UTRA domain J4N42_14895 PF00005 ABC transporter J4N42_14905 PF00664 ABC transporter transmembrane region J4N42_14905 PF03412 Peptidase C39 family J4N42_14905 PF00005 ABC transporter J4N42_14920 PF00529 HlyD membrane-fusion protein of T1SS J4N42_14925 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region J4N42_14925 PF01243 Pyridoxamine 5'-phosphate oxidase J4N42_14935 PF03781 Sulfatase-modifying factor enzyme 1 J4N42_14945 PF12833 Helix-turn-helix domain J4N42_14950 PF00171 Aldehyde dehydrogenase family J4N42_14950 PF01619 Proline dehydrogenase J4N42_14950 PF14850 DNA-binding domain of Proline dehydrogenase J4N42_14950 PF18327 Proline utilization A proline dehydrogenase N-terminal domain J4N42_14960 PF00474 Sodium:solute symporter family J4N42_14965 PF01037 Lrp/AsnC ligand binding domain J4N42_14975 PF01551 Peptidase family M23 J4N42_14975 PF04225 Opacity-associated protein A LysM-like domain J4N42_14990 PF00375 Sodium:dicarboxylate symporter family J4N42_14995 PF03193 RsgA GTPase J4N42_15005 PF02630 SCO1/SenC J4N42_15020 PF03616 Sodium/glutamate symporter J4N42_15025 PF12945 Flagellar protein YcgR J4N42_15025 PF07238 PilZ domain J4N42_15045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_15045 PF03466 LysR substrate binding domain J4N42_15050 PF01965 DJ-1/PfpI family J4N42_15050 PF12833 Helix-turn-helix domain J4N42_15055 PF00581 Rhodanese-like domain J4N42_15070 PF07690 Major Facilitator Superfamily J4N42_15075 PF02525 Flavodoxin-like fold J4N42_15080 PF02254 TrkA-N domain J4N42_15080 PF00999 Sodium/hydrogen exchanger family J4N42_15090 PF03992 Antibiotic biosynthesis monooxygenase J4N42_15110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_15110 PF03466 LysR substrate binding domain J4N42_15115 PF00128 Alpha amylase, catalytic domain J4N42_15115 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J4N42_15120 PF02264 LamB porin J4N42_15125 PF07148 Maltose operon periplasmic protein precursor (MalM) J4N42_15130 PF02903 Alpha amylase, N-terminal ig-like domain J4N42_15130 PF16657 Maltogenic Amylase, C-terminal domain J4N42_15130 PF00128 Alpha amylase, catalytic domain J4N42_15135 PF04389 Peptidase family M28 J4N42_15135 PF02225 PA domain J4N42_15140 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase J4N42_15155 PF03466 LysR substrate binding domain J4N42_15155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_15165 PF00730 HhH-GPD superfamily base excision DNA repair protein J4N42_15165 PF06029 AlkA N-terminal domain J4N42_15170 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J4N42_15170 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain J4N42_15180 PF03600 Citrate transporter J4N42_15185 PF07670 Nucleoside recognition J4N42_15190 PF07670 Nucleoside recognition J4N42_15195 PF07687 Peptidase dimerisation domain J4N42_15195 PF01546 Peptidase family M20/M25/M40 J4N42_15200 PF08448 PAS fold J4N42_15200 PF00563 EAL domain J4N42_15200 PF00990 Diguanylate cyclase, GGDEF domain J4N42_15205 PF00672 HAMP domain J4N42_15205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_15210 PF00563 EAL domain J4N42_15210 PF12792 CSS motif domain associated with EAL J4N42_15215 PF00672 HAMP domain J4N42_15215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_15215 PF17200 Single Cache domain 2 J4N42_15225 PF00375 Sodium:dicarboxylate symporter family J4N42_15230 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 J4N42_15255 PF00561 alpha/beta hydrolase fold J4N42_15260 PF00881 Nitroreductase family J4N42_15270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_15270 PF03466 LysR substrate binding domain J4N42_15275 PF00892 EamA-like transporter family J4N42_15280 PF00583 Acetyltransferase (GNAT) family J4N42_15295 PF01734 Patatin-like phospholipase J4N42_15305 PF00535 Glycosyl transferase family 2 J4N42_15310 PF13439 Glycosyltransferase Family 4 J4N42_15310 PF00534 Glycosyl transferases group 1 J4N42_15335 PF01979 Amidohydrolase family J4N42_15340 PF00132 Bacterial transferase hexapeptide (six repeats) J4N42_15345 PF02492 CobW/HypB/UreG, nucleotide-binding domain J4N42_15345 PF07683 Cobalamin synthesis protein cobW C-terminal domain J4N42_15350 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family J4N42_15355 PF08525 Opacity-associated protein A N-terminal motif J4N42_15355 PF01551 Peptidase family M23 J4N42_15355 PF01476 LysM domain J4N42_15360 PF18027 Cytosolic carboxypeptidase N-terminal domain J4N42_15360 PF00246 Zinc carboxypeptidase J4N42_15370 PF01569 PAP2 superfamily J4N42_15375 PF03466 LysR substrate binding domain J4N42_15375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_15380 PF01554 MatE J4N42_15390 PF03253 Urea transporter J4N42_15395 PF02743 Cache domain J4N42_15395 PF00672 HAMP domain J4N42_15395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_15405 PF12848 ABC transporter J4N42_15405 PF16326 ABC transporter C-terminal domain J4N42_15405 PF00005 ABC transporter J4N42_15430 PF00990 Diguanylate cyclase, GGDEF domain J4N42_15430 PF13426 PAS domain J4N42_15430 PF00563 EAL domain J4N42_15490 PF00210 Ferritin-like domain J4N42_15495 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N42_15495 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J4N42_15500 PF00990 Diguanylate cyclase, GGDEF domain J4N42_15500 PF00072 Response regulator receiver domain J4N42_15510 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J4N42_15510 PF13378 Enolase C-terminal domain-like J4N42_15520 PF03466 LysR substrate binding domain J4N42_15520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_15560 PF02743 Cache domain J4N42_15560 PF00672 HAMP domain J4N42_15560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_15570 PF13533 Biotin-lipoyl like J4N42_15580 PF13419 Haloacid dehalogenase-like hydrolase J4N42_15585 PF00753 Metallo-beta-lactamase superfamily J4N42_15590 PF00005 ABC transporter J4N42_15590 PF00571 CBS domain J4N42_15595 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_15600 PF04069 Substrate binding domain of ABC-type glycine betaine transport system J4N42_15605 PF00732 GMC oxidoreductase J4N42_15605 PF05199 GMC oxidoreductase J4N42_15610 PF00171 Aldehyde dehydrogenase family J4N42_15615 PF13977 BetI-type transcriptional repressor, C-terminal J4N42_15615 PF00440 Bacterial regulatory proteins, tetR family J4N42_15620 PF01568 Molydopterin dinucleotide binding domain J4N42_15620 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region J4N42_15620 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J4N42_15620 PF12838 4Fe-4S dicluster domain J4N42_15620 PF00384 Molybdopterin oxidoreductase J4N42_15625 PF02368 Bacterial Ig-like domain (group 2) J4N42_15630 PF00196 Bacterial regulatory proteins, luxR family J4N42_15630 PF00072 Response regulator receiver domain J4N42_15635 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J4N42_15670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_15670 PF03466 LysR substrate binding domain J4N42_15675 PF00561 alpha/beta hydrolase fold J4N42_15685 PF01323 DSBA-like thioredoxin domain J4N42_15695 PF00501 AMP-binding enzyme J4N42_15695 PF13193 AMP-binding enzyme C-terminal domain J4N42_15705 PF00255 Glutathione peroxidase J4N42_15710 PF01047 MarR family J4N42_15720 PF00144 Beta-lactamase J4N42_15730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_15745 PF06628 Catalase-related immune-responsive J4N42_15745 PF00199 Catalase J4N42_15760 PF16884 N-terminal domain of oxidoreductase J4N42_15760 PF00107 Zinc-binding dehydrogenase J4N42_15765 PF00440 Bacterial regulatory proteins, tetR family J4N42_15765 PF16925 Tetracyclin repressor-like, C-terminal domain J4N42_15785 PF00313 'Cold-shock' DNA-binding domain J4N42_15790 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J4N42_15795 PF01638 HxlR-like helix-turn-helix J4N42_15810 PF14602 Hexapeptide repeat of succinyl-transferase J4N42_15810 PF12464 Maltose acetyltransferase J4N42_15820 PF00072 Response regulator receiver domain J4N42_15820 PF02954 Bacterial regulatory protein, Fis family J4N42_15820 PF00158 Sigma-54 interaction domain J4N42_15825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_15825 PF00512 His Kinase A (phospho-acceptor) domain J4N42_15830 PF12849 PBP superfamily domain J4N42_15835 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_15840 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_15845 PF00005 ABC transporter J4N42_15850 PF00563 EAL domain J4N42_15850 PF00990 Diguanylate cyclase, GGDEF domain J4N42_15850 PF03707 Bacterial signalling protein N terminal repeat J4N42_15860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_15860 PF00672 HAMP domain J4N42_15860 PF12729 Four helix bundle sensory module for signal transduction J4N42_15865 PF00512 His Kinase A (phospho-acceptor) domain J4N42_15865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_15865 PF00072 Response regulator receiver domain J4N42_15865 PF13188 PAS domain J4N42_15865 PF08448 PAS fold J4N42_15870 PF03707 Bacterial signalling protein N terminal repeat J4N42_15870 PF00563 EAL domain J4N42_15870 PF00990 Diguanylate cyclase, GGDEF domain J4N42_15875 PF00072 Response regulator receiver domain J4N42_15875 PF02954 Bacterial regulatory protein, Fis family J4N42_15875 PF00158 Sigma-54 interaction domain J4N42_15880 PF00356 Bacterial regulatory proteins, lacI family J4N42_15890 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_15895 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_15900 PF00232 Glycosyl hydrolase family 1 J4N42_15905 PF00005 ABC transporter J4N42_15905 PF17912 MalK OB fold domain J4N42_15910 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain J4N42_15910 PF06165 Glycosyltransferase family 36 J4N42_15915 PF01263 Aldose 1-epimerase J4N42_15925 PF00356 Bacterial regulatory proteins, lacI family J4N42_15935 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J4N42_15945 PF03480 Bacterial extracellular solute-binding protein, family 7 J4N42_15950 PF00171 Aldehyde dehydrogenase family J4N42_15955 PF00202 Aminotransferase class-III J4N42_15960 PF00392 Bacterial regulatory proteins, gntR family J4N42_15960 PF00155 Aminotransferase class I and II J4N42_15970 PF00563 EAL domain J4N42_15970 PF03707 Bacterial signalling protein N terminal repeat J4N42_15970 PF00990 Diguanylate cyclase, GGDEF domain J4N42_15980 PF07670 Nucleoside recognition J4N42_16005 PF08525 Opacity-associated protein A N-terminal motif J4N42_16005 PF01476 LysM domain J4N42_16005 PF01551 Peptidase family M23 J4N42_16010 PF08447 PAS fold J4N42_16010 PF08448 PAS fold J4N42_16010 PF00563 EAL domain J4N42_16010 PF00990 Diguanylate cyclase, GGDEF domain J4N42_16020 PF07690 Major Facilitator Superfamily J4N42_16030 PF00462 Glutaredoxin J4N42_16035 PF00892 EamA-like transporter family J4N42_16040 PF13609 Gram-negative porin J4N42_16045 PF13462 Thioredoxin J4N42_16045 PF06965 Na+/H+ antiporter 1 J4N42_16050 PF00578 AhpC/TSA family J4N42_16055 PF11412 Disulphide bond corrector protein DsbC J4N42_16055 PF02683 Cytochrome C biogenesis protein transmembrane region J4N42_16065 PF13609 Gram-negative porin J4N42_16075 PF01557 Fumarylacetoacetate (FAA) hydrolase family J4N42_16095 PF01810 LysE type translocator J4N42_16100 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J4N42_16100 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J4N42_16100 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J4N42_16100 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J4N42_16105 PF02790 Cytochrome C oxidase subunit II, transmembrane domain J4N42_16105 PF00116 Cytochrome C oxidase subunit II, periplasmic domain J4N42_16110 PF00115 Cytochrome C and Quinol oxidase polypeptide I J4N42_16115 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 J4N42_16120 PF00510 Cytochrome c oxidase subunit III J4N42_16140 PF02628 Cytochrome oxidase assembly protein J4N42_16145 PF01040 UbiA prenyltransferase family J4N42_16155 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_16160 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N42_16165 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_16170 PF00005 ABC transporter J4N42_16175 PF00793 DAHP synthetase I family J4N42_16185 PF01212 Beta-eliminating lyase J4N42_16195 PF01810 LysE type translocator J4N42_16200 PF01037 Lrp/AsnC ligand binding domain J4N42_16205 PF12262 Bacterial virulence factor lipase N-terminal J4N42_16210 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J4N42_16225 PF00128 Alpha amylase, catalytic domain J4N42_16240 PF00248 Aldo/keto reductase family J4N42_16250 PF00005 ABC transporter J4N42_16255 PF12704 MacB-like periplasmic core domain J4N42_16255 PF02687 FtsX-like permease family J4N42_16270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_16270 PF06580 Histidine kinase J4N42_16270 PF13492 GAF domain J4N42_16270 PF07694 5TMR of 5TMR-LYT J4N42_16275 PF04397 LytTr DNA-binding domain J4N42_16275 PF00072 Response regulator receiver domain J4N42_16280 PF00563 EAL domain J4N42_16280 PF00990 Diguanylate cyclase, GGDEF domain J4N42_16280 PF00360 Phytochrome region J4N42_16280 PF01590 GAF domain J4N42_16300 PF00132 Bacterial transferase hexapeptide (six repeats) J4N42_16305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_16305 PF03466 LysR substrate binding domain J4N42_16315 PF00155 Aminotransferase class I and II J4N42_16315 PF00392 Bacterial regulatory proteins, gntR family J4N42_16325 PF00990 Diguanylate cyclase, GGDEF domain J4N42_16350 PF01554 MatE J4N42_16360 PF01590 GAF domain J4N42_16360 PF00158 Sigma-54 interaction domain J4N42_16365 PF00970 Oxidoreductase FAD-binding domain J4N42_16365 PF00042 Globin J4N42_16365 PF00175 Oxidoreductase NAD-binding domain J4N42_16375 PF07152 YaeQ protein J4N42_16380 PF00313 'Cold-shock' DNA-binding domain J4N42_16385 PF03889 Alternative ribosome-rescue factor A J4N42_16400 PF07943 Penicillin-binding protein 5, C-terminal domain J4N42_16400 PF00768 D-alanyl-D-alanine carboxypeptidase J4N42_16415 PF12843 Putative quorum-sensing-regulated virulence factor J4N42_16450 PF10415 Fumarase C C-terminus J4N42_16450 PF00206 Lyase J4N42_16455 PF00171 Aldehyde dehydrogenase family J4N42_16460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_16460 PF03466 LysR substrate binding domain J4N42_16465 PF00248 Aldo/keto reductase family J4N42_16470 PF00557 Metallopeptidase family M24 J4N42_16475 PF02028 BCCT, betaine/carnitine/choline family transporter J4N42_16480 PF02899 Phage integrase, N-terminal SAM-like domain J4N42_16480 PF00589 Phage integrase family J4N42_16490 PF01638 HxlR-like helix-turn-helix J4N42_16500 PF01323 DSBA-like thioredoxin domain J4N42_16520 PF07885 Ion channel J4N42_16535 PF13411 MerR HTH family regulatory protein J4N42_16540 PF01522 Polysaccharide deacetylase J4N42_16545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_16545 PF03466 LysR substrate binding domain J4N42_16555 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J4N42_16570 PF04074 YhcH/YjgK/YiaL J4N42_16575 PF00474 Sodium:solute symporter family J4N42_16585 PF01418 Helix-turn-helix domain, rpiR family J4N42_16585 PF01380 SIS domain J4N42_16590 PF00701 Dihydrodipicolinate synthetase family J4N42_16595 PF05025 RbsD / FucU transport protein family J4N42_16600 PF00005 ABC transporter J4N42_16605 PF02653 Branched-chain amino acid transport system / permease component J4N42_16610 PF13407 Periplasmic binding protein domain J4N42_16615 PF00294 pfkB family carbohydrate kinase J4N42_16620 PF00356 Bacterial regulatory proteins, lacI family J4N42_16630 PF00672 HAMP domain J4N42_16630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_16630 PF00512 His Kinase A (phospho-acceptor) domain J4N42_16635 PF00072 Response regulator receiver domain J4N42_16635 PF00486 Transcriptional regulatory protein, C terminal J4N42_16655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_16655 PF08447 PAS fold J4N42_16670 PF14864 Alkyl sulfatase C-terminal J4N42_16670 PF14863 Alkyl sulfatase dimerisation J4N42_16670 PF00753 Metallo-beta-lactamase superfamily J4N42_16680 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J4N42_16680 PF02824 TGS domain J4N42_16680 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J4N42_16680 PF03129 Anticodon binding domain J4N42_16685 PF00707 Translation initiation factor IF-3, C-terminal domain J4N42_16685 PF05198 Translation initiation factor IF-3, N-terminal domain J4N42_16690 PF01632 Ribosomal protein L35 J4N42_16700 PF00474 Sodium:solute symporter family J4N42_16715 PF00356 Bacterial regulatory proteins, lacI family J4N42_16720 PF03328 HpcH/HpaI aldolase/citrate lyase family J4N42_16725 PF00815 Histidinol dehydrogenase J4N42_16740 PF00561 alpha/beta hydrolase fold J4N42_16745 PF00116 Cytochrome C oxidase subunit II, periplasmic domain J4N42_16745 PF06481 COX Aromatic Rich Motif J4N42_16750 PF00115 Cytochrome C and Quinol oxidase polypeptide I J4N42_16755 PF00510 Cytochrome c oxidase subunit III J4N42_16760 PF03626 Prokaryotic Cytochrome C oxidase subunit IV J4N42_16765 PF01040 UbiA prenyltransferase family J4N42_16770 PF10571 Uncharacterised protein family UPF0547 J4N42_16785 PF01575 MaoC like domain J4N42_16790 PF12849 PBP superfamily domain J4N42_16800 PF08206 Ribonuclease B OB domain J4N42_16800 PF00773 RNB domain J4N42_16800 PF00575 S1 RNA binding domain J4N42_16805 PF00271 Helicase conserved C-terminal domain J4N42_16805 PF00270 DEAD/DEAH box helicase J4N42_16805 PF03880 DbpA RNA binding domain J4N42_16815 PF00171 Aldehyde dehydrogenase family J4N42_16820 PF01590 GAF domain J4N42_16820 PF02954 Bacterial regulatory protein, Fis family J4N42_16820 PF00158 Sigma-54 interaction domain J4N42_16835 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ J4N42_16850 PF12833 Helix-turn-helix domain J4N42_16860 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain J4N42_16860 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J4N42_16865 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase J4N42_16870 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain J4N42_16870 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain J4N42_16875 PF01966 HD domain J4N42_16905 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N42_16910 PF03466 LysR substrate binding domain J4N42_16910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_16925 PF00990 Diguanylate cyclase, GGDEF domain J4N42_16925 PF00563 EAL domain J4N42_16925 PF03707 Bacterial signalling protein N terminal repeat J4N42_16930 PF00155 Aminotransferase class I and II J4N42_16935 PF08240 Alcohol dehydrogenase GroES-like domain J4N42_16935 PF00107 Zinc-binding dehydrogenase J4N42_16945 PF00194 Eukaryotic-type carbonic anhydrase J4N42_17000 PF08447 PAS fold J4N42_17000 PF00990 Diguanylate cyclase, GGDEF domain J4N42_17000 PF00563 EAL domain J4N42_17000 PF08448 PAS fold J4N42_17005 PF01758 Sodium Bile acid symporter family J4N42_17030 PF02583 Metal-sensitive transcriptional repressor J4N42_17035 PF03824 High-affinity nickel-transport protein J4N42_17060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_17060 PF03466 LysR substrate binding domain J4N42_17065 PF05368 NmrA-like family J4N42_17085 PF00924 Mechanosensitive ion channel J4N42_17090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_17090 PF03466 LysR substrate binding domain J4N42_17100 PF03448 MgtE intracellular N domain J4N42_17100 PF01769 Divalent cation transporter J4N42_17100 PF00571 CBS domain J4N42_17110 PF01699 Sodium/calcium exchanger protein J4N42_17115 PF07549 SecD/SecF GG Motif J4N42_17115 PF02355 Protein export membrane protein J4N42_17120 PF07549 SecD/SecF GG Motif J4N42_17120 PF13721 SecD export protein N-terminal TM region J4N42_17120 PF02355 Protein export membrane protein J4N42_17140 PF01070 FMN-dependent dehydrogenase J4N42_17145 PF02652 L-lactate permease J4N42_17150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_17150 PF03466 LysR substrate binding domain J4N42_17155 PF00005 ABC transporter J4N42_17155 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N42_17165 PF13654 AAA domain J4N42_17165 PF05362 Lon protease (S16) C-terminal proteolytic domain J4N42_17180 PF02653 Branched-chain amino acid transport system / permease component J4N42_17190 PF00005 ABC transporter J4N42_17190 PF12399 Branched-chain amino acid ATP-binding cassette transporter J4N42_17195 PF00005 ABC transporter J4N42_17200 PF01774 UreD urease accessory protein J4N42_17205 PF00547 Urease, gamma subunit J4N42_17210 PF00699 Urease beta subunit J4N42_17215 PF01979 Amidohydrolase family J4N42_17215 PF00449 Urease alpha-subunit, N-terminal domain J4N42_17220 PF02814 UreE urease accessory protein, N-terminal domain J4N42_17220 PF05194 UreE urease accessory protein, C-terminal domain J4N42_17230 PF01730 UreF J4N42_17235 PF02492 CobW/HypB/UreG, nucleotide-binding domain J4N42_17245 PF00990 Diguanylate cyclase, GGDEF domain J4N42_17250 PF00360 Phytochrome region J4N42_17250 PF00990 Diguanylate cyclase, GGDEF domain J4N42_17250 PF01590 GAF domain J4N42_17250 PF00563 EAL domain J4N42_17260 PF13519 von Willebrand factor type A domain J4N42_17260 PF07584 Aerotolerance regulator N-terminal J4N42_17275 PF01882 Protein of unknown function DUF58 J4N42_17280 PF17863 AAA lid domain J4N42_17280 PF07726 ATPase family associated with various cellular activities (AAA) J4N42_17290 PF01979 Amidohydrolase family J4N42_17295 PF01679 Proteolipid membrane potential modulator J4N42_17300 PF03476 MOSC N-terminal beta barrel domain J4N42_17300 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N42_17300 PF03476 MOSC N-terminal beta barrel domain J4N42_17300 PF03473 MOSC domain J4N42_17300 PF03473 MOSC domain J4N42_17300 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N42_17305 PF00765 Autoinducer synthase J4N42_17310 PF03472 Autoinducer binding domain J4N42_17310 PF00196 Bacterial regulatory proteins, luxR family J4N42_17335 PF00128 Alpha amylase, catalytic domain J4N42_17365 PF00072 Response regulator receiver domain J4N42_17365 PF00486 Transcriptional regulatory protein, C terminal J4N42_17375 PF03853 YjeF-related protein N-terminus J4N42_17375 PF01256 Carbohydrate kinase J4N42_17385 PF00478 IMP dehydrogenase / GMP reductase domain J4N42_17395 PF00176 SNF2 family N-terminal domain J4N42_17395 PF00271 Helicase conserved C-terminal domain J4N42_17410 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term J4N42_17410 PF12833 Helix-turn-helix domain J4N42_17425 PF00529 HlyD membrane-fusion protein of T1SS J4N42_17425 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N42_17435 PF01594 AI-2E family transporter J4N42_17455 PF05552 Conserved TM helix J4N42_17455 PF00924 Mechanosensitive ion channel J4N42_17465 PF04363 Protein of unknown function (DUF496) J4N42_17475 PF04337 Protein of unknown function, DUF480 J4N42_17480 PF01541 GIY-YIG catalytic domain J4N42_17490 PF13407 Periplasmic binding protein domain J4N42_17495 PF00512 His Kinase A (phospho-acceptor) domain J4N42_17495 PF00072 Response regulator receiver domain J4N42_17495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_17495 PF09308 LuxQ, periplasmic J4N42_17520 PF12805 FUSC-like inner membrane protein yccS J4N42_17525 PF12462 DNA helicase IV / RNA helicase N terminal J4N42_17525 PF00580 UvrD/REP helicase N-terminal domain J4N42_17525 PF13361 UvrD-like helicase C-terminal domain J4N42_17530 PF02142 MGS-like domain J4N42_17535 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family J4N42_17540 PF00072 Response regulator receiver domain J4N42_17540 PF01627 Hpt domain J4N42_17540 PF00672 HAMP domain J4N42_17540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_17540 PF00512 His Kinase A (phospho-acceptor) domain J4N42_17545 PF00294 pfkB family carbohydrate kinase J4N42_17560 PF13419 Haloacid dehalogenase-like hydrolase J4N42_17580 PF00226 DnaJ domain J4N42_17580 PF00684 DnaJ central domain J4N42_17580 PF01556 DnaJ C terminal domain J4N42_17590 PF00498 FHA domain J4N42_17590 PF00563 EAL domain J4N42_17590 PF00990 Diguanylate cyclase, GGDEF domain J4N42_17595 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase J4N42_17595 PF12241 Trans-2-enoyl-CoA reductase catalytic region J4N42_17595 PF07055 Enoyl reductase FAD binding domain J4N42_17600 PF13472 GDSL-like Lipase/Acylhydrolase family J4N42_17605 PF00005 ABC transporter J4N42_17620 PF02626 Carboxyltransferase domain, subdomain A and B J4N42_17630 PF03746 LamB/YcsF family J4N42_17635 PF07715 TonB-dependent Receptor Plug Domain J4N42_17635 PF00593 TonB dependent receptor J4N42_17645 PF08447 PAS fold J4N42_17645 PF00563 EAL domain J4N42_17645 PF08448 PAS fold J4N42_17645 PF05231 MASE1 J4N42_17645 PF00990 Diguanylate cyclase, GGDEF domain J4N42_17645 PF13426 PAS domain J4N42_17650 PF16363 GDP-mannose 4,6 dehydratase J4N42_17660 PF03264 NapC/NirT cytochrome c family, N-terminal region J4N42_17665 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) J4N42_17670 PF01568 Molydopterin dinucleotide binding domain J4N42_17670 PF00384 Molybdopterin oxidoreductase J4N42_17670 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J4N42_17680 PF13187 4Fe-4S dicluster domain J4N42_17680 PF12800 4Fe-4S binding domain J4N42_17680 PF00037 4Fe-4S binding domain J4N42_17685 PF07730 Histidine kinase J4N42_17685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_17685 PF00672 HAMP domain J4N42_17685 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term J4N42_17690 PF00072 Response regulator receiver domain J4N42_17690 PF00196 Bacterial regulatory proteins, luxR family J4N42_17695 PF03606 C4-dicarboxylate anaerobic carrier J4N42_17700 PF12792 CSS motif domain associated with EAL J4N42_17700 PF00563 EAL domain J4N42_17720 PF01292 Prokaryotic cytochrome b561 J4N42_17725 PF04264 YceI-like domain J4N42_17730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_17730 PF03466 LysR substrate binding domain J4N42_17745 PF06496 Protein of unknown function (DUF1097) J4N42_17750 PF11398 Protein of unknown function (DUF2813) J4N42_17755 PF00149 Calcineurin-like phosphoesterase J4N42_17755 PF02872 5'-nucleotidase, C-terminal domain J4N42_17760 PF12320 Type 5 capsule protein repressor C-terminal domain J4N42_17760 PF00149 Calcineurin-like phosphoesterase J4N42_17765 PF13476 AAA domain J4N42_17770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_17770 PF00072 Response regulator receiver domain J4N42_17775 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J4N42_17795 PF00155 Aminotransferase class I and II J4N42_17805 PF00654 Voltage gated chloride channel J4N42_17810 PF07683 Cobalamin synthesis protein cobW C-terminal domain J4N42_17810 PF02492 CobW/HypB/UreG, nucleotide-binding domain J4N42_17815 PF01926 50S ribosome-binding GTPase J4N42_17825 PF02896 PEP-utilising enzyme, TIM barrel domain J4N42_17825 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain J4N42_17825 PF00391 PEP-utilising enzyme, mobile domain J4N42_17830 PF03618 Kinase/pyrophosphorylase J4N42_17835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_17835 PF00672 HAMP domain J4N42_17835 PF12729 Four helix bundle sensory module for signal transduction J4N42_17840 PF00472 RF-1 domain J4N42_17845 PF13419 Haloacid dehalogenase-like hydrolase J4N42_17850 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N42_17850 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J4N42_17860 PF00691 OmpA family J4N42_17860 PF13505 Outer membrane protein beta-barrel domain J4N42_17875 PF01037 Lrp/AsnC ligand binding domain J4N42_17885 PF00923 Transaldolase/Fructose-6-phosphate aldolase J4N42_17895 PF08329 Chitinase A, N-terminal domain J4N42_17895 PF00704 Glycosyl hydrolases family 18 J4N42_17900 PF00581 Rhodanese-like domain J4N42_17920 PF00899 ThiF family J4N42_17925 PF03454 MoeA C-terminal region (domain IV) J4N42_17925 PF00994 Probable molybdopterin binding domain J4N42_17925 PF03453 MoeA N-terminal region (domain I and II) J4N42_17930 PF01227 GTP cyclohydrolase I J4N42_17935 PF03880 DbpA RNA binding domain J4N42_17935 PF00271 Helicase conserved C-terminal domain J4N42_17935 PF00270 DEAD/DEAH box helicase J4N42_17945 PF01979 Amidohydrolase family J4N42_17950 PF01625 Peptide methionine sulfoxide reductase J4N42_17950 PF01641 SelR domain J4N42_17955 PF01268 Formate--tetrahydrofolate ligase J4N42_17965 PF00465 Iron-containing alcohol dehydrogenase J4N42_17970 PF12833 Helix-turn-helix domain J4N42_17970 PF06719 AraC-type transcriptional regulator N-terminus J4N42_17975 PF06483 Chitinase C J4N42_17975 PF00704 Glycosyl hydrolases family 18 J4N42_17980 PF00483 Nucleotidyl transferase J4N42_17985 PF08447 PAS fold J4N42_17985 PF08448 PAS fold J4N42_17985 PF05231 MASE1 J4N42_17985 PF13426 PAS domain J4N42_17985 PF00563 EAL domain J4N42_17985 PF00990 Diguanylate cyclase, GGDEF domain J4N42_17990 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N42_17990 PF02378 Phosphotransferase system, EIIC J4N42_17995 PF00294 pfkB family carbohydrate kinase J4N42_18000 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N42_18000 PF00381 PTS HPr component phosphorylation site J4N42_18005 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family J4N42_18005 PF00356 Bacterial regulatory proteins, lacI family J4N42_18020 PF07685 CobB/CobQ-like glutamine amidotransferase domain J4N42_18020 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J4N42_18030 PF00072 Response regulator receiver domain J4N42_18030 PF00486 Transcriptional regulatory protein, C terminal J4N42_18040 PF07694 5TMR of 5TMR-LYT J4N42_18040 PF00990 Diguanylate cyclase, GGDEF domain J4N42_18055 PF01262 Alanine dehydrogenase/PNT, C-terminal domain J4N42_18055 PF05222 Alanine dehydrogenase/PNT, N-terminal domain J4N42_18055 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch J4N42_18060 PF02233 NAD(P) transhydrogenase beta subunit J4N42_18070 PF00486 Transcriptional regulatory protein, C terminal J4N42_18070 PF00072 Response regulator receiver domain J4N42_18085 PF03701 Uncharacterised protein family (UPF0181) J4N42_18105 PF00145 C-5 cytosine-specific DNA methylase J4N42_18140 PF05707 Zonular occludens toxin (Zot) J4N42_18150 PF00145 C-5 cytosine-specific DNA methylase J4N42_18185 PF05707 Zonular occludens toxin (Zot) J4N42_18195 PF00145 C-5 cytosine-specific DNA methylase J4N42_18230 PF05707 Zonular occludens toxin (Zot) J4N42_18235 PF01253 Translation initiation factor SUI1 J4N42_18250 PF01820 D-ala D-ala ligase N-terminus J4N42_18250 PF07478 D-ala D-ala ligase C-terminus J4N42_18260 PF13380 CoA binding domain J4N42_18260 PF13607 Succinyl-CoA ligase like flavodoxin domain J4N42_18260 PF00583 Acetyltransferase (GNAT) family J4N42_18265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_18265 PF03466 LysR substrate binding domain J4N42_18270 PF07715 TonB-dependent Receptor Plug Domain J4N42_18270 PF04886 PT repeat J4N42_18270 PF00593 TonB dependent receptor J4N42_18280 PF12793 Sugar transport-related sRNA regulator N-term J4N42_18280 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N42_18290 PF03061 Thioesterase superfamily J4N42_18295 PF01435 Peptidase family M48 J4N42_18300 PF17820 PDZ domain J4N42_18300 PF02163 Peptidase family M50 J4N42_18320 PF03741 Integral membrane protein TerC family J4N42_18325 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J4N42_18325 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J4N42_18330 PF00085 Thioredoxin J4N42_18335 PF07690 Major Facilitator Superfamily J4N42_18340 PF11756 Nitrous oxide-stimulated promoter J4N42_18355 PF01156 Inosine-uridine preferring nucleoside hydrolase J4N42_18360 PF00990 Diguanylate cyclase, GGDEF domain J4N42_18360 PF17151 Periplasmic sensor domain J4N42_18390 PF05762 VWA domain containing CoxE-like protein J4N42_18395 PF07728 AAA domain (dynein-related subfamily) J4N42_18395 PF17868 AAA lid domain J4N42_18395 PF12592 Protein of unknown function (DUF3763) J4N42_18405 PF01212 Beta-eliminating lyase J4N42_18420 PF01177 Asp/Glu/Hydantoin racemase J4N42_18445 PF00873 AcrB/AcrD/AcrF family J4N42_18450 PF13533 Biotin-lipoyl like J4N42_18465 PF00591 Glycosyl transferase family, a/b domain J4N42_18465 PF02885 Glycosyl transferase family, helical bundle domain J4N42_18470 PF10688 Bacterial inner membrane protein J4N42_18475 PF00676 Dehydrogenase E1 component J4N42_18480 PF02779 Transketolase, pyrimidine binding domain J4N42_18480 PF02780 Transketolase, C-terminal domain J4N42_18485 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J4N42_18485 PF00364 Biotin-requiring enzyme J4N42_18485 PF02817 e3 binding domain J4N42_18490 PF01012 Electron transfer flavoprotein domain J4N42_18490 PF00766 Electron transfer flavoprotein FAD-binding domain J4N42_18495 PF01012 Electron transfer flavoprotein domain J4N42_18510 PF02798 Glutathione S-transferase, N-terminal domain J4N42_18535 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N42_18545 PF02694 Uncharacterised BCR, YnfA/UPF0060 family J4N42_18590 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J4N42_18590 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J4N42_18595 PF00378 Enoyl-CoA hydratase/isomerase J4N42_18600 PF00378 Enoyl-CoA hydratase/isomerase J4N42_18605 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J4N42_18605 PF02770 Acyl-CoA dehydrogenase, middle domain J4N42_18605 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J4N42_18610 PF00171 Aldehyde dehydrogenase family J4N42_18615 PF00108 Thiolase, N-terminal domain J4N42_18615 PF02803 Thiolase, C-terminal domain J4N42_18620 PF00376 MerR family regulatory protein J4N42_18620 PF09278 MerR, DNA binding J4N42_18625 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J4N42_18625 PF02770 Acyl-CoA dehydrogenase, middle domain J4N42_18625 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J4N42_18630 PF01039 Carboxyl transferase domain J4N42_18635 PF00378 Enoyl-CoA hydratase/isomerase J4N42_18640 PF00682 HMGL-like J4N42_18655 PF00990 Diguanylate cyclase, GGDEF domain J4N42_18660 PF00072 Response regulator receiver domain J4N42_18660 PF00196 Bacterial regulatory proteins, luxR family J4N42_18665 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase J4N42_18670 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit J4N42_18675 PF04909 Amidohydrolase J4N42_18680 PF04303 PrpF protein J4N42_18685 PF03737 Aldolase/RraA J4N42_18690 PF04909 Amidohydrolase J4N42_18695 PF18317 Shikimate 5'-dehydrogenase C-terminal domain J4N42_18695 PF01488 Shikimate / quinate 5-dehydrogenase J4N42_18695 PF08501 Shikimate dehydrogenase substrate binding domain J4N42_18700 PF01220 Dehydroquinase class II J4N42_18705 PF03480 Bacterial extracellular solute-binding protein, family 7 J4N42_18710 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J4N42_18710 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J4N42_18720 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J4N42_18720 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J4N42_18725 PF01261 Xylose isomerase-like TIM barrel J4N42_18725 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N42_18735 PF03547 Membrane transport protein J4N42_18740 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J4N42_18750 PF03480 Bacterial extracellular solute-binding protein, family 7 J4N42_18755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_18755 PF03466 LysR substrate binding domain J4N42_18765 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J4N42_18770 PF00248 Aldo/keto reductase family J4N42_18775 PF14031 Putative serine dehydratase domain J4N42_18775 PF01168 Alanine racemase, N-terminal domain J4N42_18790 PF01638 HxlR-like helix-turn-helix J4N42_18815 PF00990 Diguanylate cyclase, GGDEF domain J4N42_18815 PF07694 5TMR of 5TMR-LYT J4N42_18820 PF00672 HAMP domain J4N42_18820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_18820 PF17200 Single Cache domain 2 J4N42_18825 PF00672 HAMP domain J4N42_18825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_18825 PF17200 Single Cache domain 2 J4N42_18840 PF07690 Major Facilitator Superfamily J4N42_18845 PF18081 Fanconi anemia-associated nuclease SAP domain J4N42_18845 PF08774 VRR-NUC domain J4N42_18855 PF04055 Radical SAM superfamily J4N42_18855 PF13186 Iron-sulfur cluster-binding domain J4N42_18860 PF03781 Sulfatase-modifying factor enzyme 1 J4N42_18865 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase J4N42_18870 PF03358 NADPH-dependent FMN reductase J4N42_18895 PF12464 Maltose acetyltransferase J4N42_18895 PF14602 Hexapeptide repeat of succinyl-transferase J4N42_18900 PF03466 LysR substrate binding domain J4N42_18900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_18930 PF17863 AAA lid domain J4N42_18930 PF07726 ATPase family associated with various cellular activities (AAA) J4N42_18940 PF00884 Sulfatase J4N42_18950 PF00360 Phytochrome region J4N42_18950 PF00990 Diguanylate cyclase, GGDEF domain J4N42_18950 PF01590 GAF domain J4N42_18950 PF00563 EAL domain J4N42_18955 PF07687 Peptidase dimerisation domain J4N42_18955 PF01546 Peptidase family M20/M25/M40 J4N42_18960 PF03806 AbgT putative transporter family J4N42_18965 PF03466 LysR substrate binding domain J4N42_18965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_18975 PF18030 RimK PreATP-grasp domain J4N42_18975 PF08443 RimK-like ATP-grasp domain J4N42_18980 PF00155 Aminotransferase class I and II J4N42_18985 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system J4N42_18990 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system J4N42_19030 PF03477 ATP cone domain J4N42_19030 PF13597 Anaerobic ribonucleoside-triphosphate reductase J4N42_19050 PF07662 Na+ dependent nucleoside transporter C-terminus J4N42_19050 PF01773 Na+ dependent nucleoside transporter N-terminus J4N42_19050 PF07670 Nucleoside recognition J4N42_19055 PF01048 Phosphorylase superfamily J4N42_19060 PF01979 Amidohydrolase family J4N42_19070 PF04143 Sulphur transport J4N42_19080 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4N42_19080 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N42_19100 PF00106 short chain dehydrogenase J4N42_19105 PF13545 Crp-like helix-turn-helix domain J4N42_19105 PF00027 Cyclic nucleotide-binding domain J4N42_19110 PF01554 MatE J4N42_19125 PF02581 Thiamine monophosphate synthase J4N42_19130 PF02110 Hydroxyethylthiazole kinase family J4N42_19135 PF03070 TENA/THI-4/PQQC family J4N42_19140 PF09084 NMT1/THI5 like J4N42_19145 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_19150 PF00005 ABC transporter J4N42_19155 PF08543 Phosphomethylpyrimidine kinase J4N42_19160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_19160 PF03466 LysR substrate binding domain J4N42_19170 PF07690 Major Facilitator Superfamily J4N42_19175 PF00561 alpha/beta hydrolase fold J4N42_19175 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus J4N42_19185 PF02803 Thiolase, C-terminal domain J4N42_19185 PF00108 Thiolase, N-terminal domain J4N42_19190 PF00106 short chain dehydrogenase J4N42_19195 PF00873 AcrB/AcrD/AcrF family J4N42_19200 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N42_19205 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N42_19210 PF08361 MAATS-type transcriptional repressor, C-terminal region J4N42_19210 PF00440 Bacterial regulatory proteins, tetR family J4N42_19215 PF00270 DEAD/DEAH box helicase J4N42_19215 PF00271 Helicase conserved C-terminal domain J4N42_19220 PF04336 Acyl carrier protein phosphodiesterase J4N42_19225 PF03222 Tryptophan/tyrosine permease family J4N42_19230 PF12729 Four helix bundle sensory module for signal transduction J4N42_19230 PF00672 HAMP domain J4N42_19230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_19235 PF00990 Diguanylate cyclase, GGDEF domain J4N42_19235 PF17151 Periplasmic sensor domain J4N42_19240 PF12833 Helix-turn-helix domain J4N42_19245 PF11975 Family 4 glycosyl hydrolase C-terminal domain J4N42_19245 PF02056 Family 4 glycosyl hydrolase J4N42_19260 PF00990 Diguanylate cyclase, GGDEF domain J4N42_19260 PF00072 Response regulator receiver domain J4N42_19265 PF01037 Lrp/AsnC ligand binding domain J4N42_19275 PF00012 Hsp70 protein J4N42_19290 PF07690 Major Facilitator Superfamily J4N42_19300 PF00990 Diguanylate cyclase, GGDEF domain J4N42_19300 PF13185 GAF domain J4N42_19310 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N42_19310 PF00512 His Kinase A (phospho-acceptor) domain J4N42_19310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_19315 PF11849 Domain of unknown function (DUF3369) J4N42_19320 PF00909 Ammonium Transporter Family J4N42_19325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_19325 PF00672 HAMP domain J4N42_19325 PF12729 Four helix bundle sensory module for signal transduction J4N42_19335 PF12833 Helix-turn-helix domain J4N42_19340 PF01554 MatE J4N42_19355 PF00672 HAMP domain J4N42_19355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_19355 PF12729 Four helix bundle sensory module for signal transduction J4N42_19360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_19360 PF00672 HAMP domain J4N42_19360 PF02743 Cache domain J4N42_19395 PF02810 SEC-C motif J4N42_19395 PF07517 SecA DEAD-like domain J4N42_19395 PF01043 SecA preprotein cross-linking domain J4N42_19395 PF07516 SecA Wing and Scaffold domain J4N42_19410 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N42_19420 PF09905 DNA-binding protein VF530 J4N42_19425 PF00132 Bacterial transferase hexapeptide (six repeats) J4N42_19440 PF13302 Acetyltransferase (GNAT) domain J4N42_19445 PF09334 tRNA synthetases class I (M) J4N42_19445 PF01588 Putative tRNA binding domain J4N42_19445 PF08264 Anticodon-binding domain of tRNA J4N42_19455 PF01925 Sulfite exporter TauE/SafE J4N42_19465 PF01717 Cobalamin-independent synthase, Catalytic domain J4N42_19465 PF08267 Cobalamin-independent synthase, N-terminal domain J4N42_19470 PF01966 HD domain J4N42_19490 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J4N42_19490 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J4N42_19500 PF03466 LysR substrate binding domain J4N42_19500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_19505 PF09905 DNA-binding protein VF530 J4N42_19510 PF00270 DEAD/DEAH box helicase J4N42_19510 PF00271 Helicase conserved C-terminal domain J4N42_19540 PF00871 Acetokinase family J4N42_19545 PF00990 Diguanylate cyclase, GGDEF domain J4N42_19545 PF00563 EAL domain J4N42_19545 PF03707 Bacterial signalling protein N terminal repeat J4N42_19550 PF13411 MerR HTH family regulatory protein J4N42_19560 PF03466 LysR substrate binding domain J4N42_19560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_19575 PF00563 EAL domain J4N42_19575 PF00990 Diguanylate cyclase, GGDEF domain J4N42_19575 PF00498 FHA domain J4N42_19580 PF00990 Diguanylate cyclase, GGDEF domain J4N42_19585 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N42_19585 PF00005 ABC transporter J4N42_19590 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N42_19590 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_19595 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_19600 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N42_19615 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term J4N42_19615 PF12833 Helix-turn-helix domain J4N42_19620 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) J4N42_19625 PF04183 IucA / IucC family J4N42_19625 PF06276 Ferric iron reductase FhuF-like transporter J4N42_19635 PF06276 Ferric iron reductase FhuF-like transporter J4N42_19635 PF04183 IucA / IucC family J4N42_19645 PF00941 FAD binding domain in molybdopterin dehydrogenase J4N42_19645 PF03450 CO dehydrogenase flavoprotein C-terminal domain J4N42_19650 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain J4N42_19650 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase J4N42_19660 PF01979 Amidohydrolase family J4N42_19675 PF03466 LysR substrate binding domain J4N42_19675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_19680 PF08212 Lipocalin-like domain J4N42_19690 PF01810 LysE type translocator J4N42_19700 PF14602 Hexapeptide repeat of succinyl-transferase J4N42_19700 PF12464 Maltose acetyltransferase J4N42_19715 PF07690 Major Facilitator Superfamily J4N42_19740 PF00875 DNA photolyase J4N42_19740 PF03441 FAD binding domain of DNA photolyase J4N42_19745 PF04244 Deoxyribodipyrimidine photo-lyase-related protein J4N42_19750 PF00156 Phosphoribosyl transferase domain J4N42_19755 PF01810 LysE type translocator J4N42_19785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_19785 PF03466 LysR substrate binding domain J4N42_19790 PF14863 Alkyl sulfatase dimerisation J4N42_19790 PF14864 Alkyl sulfatase C-terminal J4N42_19790 PF00753 Metallo-beta-lactamase superfamily J4N42_19805 PF02595 Glycerate kinase family J4N42_19810 PF02447 GntP family permease J4N42_19815 PF17853 GGDEF-like domain J4N42_19815 PF13556 PucR C-terminal helix-turn-helix domain J4N42_19815 PF05651 Putative sugar diacid recognition J4N42_19820 PF13847 Methyltransferase domain J4N42_19830 PF04115 Ureidoglycolate lyase J4N42_19835 PF03561 Allantoicase repeat J4N42_19850 PF00576 HIUase/Transthyretin family J4N42_19855 PF00860 Permease family J4N42_19860 PF00860 Permease family J4N42_19865 PF01979 Amidohydrolase family J4N42_19910 PF07715 TonB-dependent Receptor Plug Domain J4N42_19910 PF00593 TonB dependent receptor J4N42_19915 PF00326 Prolyl oligopeptidase family J4N42_19915 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain J4N42_19920 PF05161 MOFRL family J4N42_19920 PF13660 Domain of unknown function (DUF4147) J4N42_19925 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J4N42_19925 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J4N42_19930 PF01261 Xylose isomerase-like TIM barrel J4N42_19940 PF01274 Malate synthase J4N42_19950 PF01447 Thermolysin metallopeptidase, catalytic domain J4N42_19950 PF03413 Peptidase propeptide and YPEB domain J4N42_19950 PF07504 Fungalysin/Thermolysin Propeptide Motif J4N42_19950 PF04151 Bacterial pre-peptidase C-terminal domain J4N42_19950 PF02868 Thermolysin metallopeptidase, alpha-helical domain J4N42_19965 PF00128 Alpha amylase, catalytic domain J4N42_19990 PF01584 CheW-like domain J4N42_19990 PF00072 Response regulator receiver domain J4N42_20005 PF11965 Domain of unknown function (DUF3479) J4N42_20005 PF02514 CobN/Magnesium Chelatase J4N42_20010 PF00593 TonB dependent receptor J4N42_20010 PF07715 TonB-dependent Receptor Plug Domain J4N42_20020 PF04237 YjbR J4N42_20025 PF01047 MarR family J4N42_20030 PF00892 EamA-like transporter family J4N42_20035 PF00990 Diguanylate cyclase, GGDEF domain J4N42_20055 PF03315 Serine dehydratase beta chain J4N42_20055 PF03313 Serine dehydratase alpha chain J4N42_20060 PF03466 LysR substrate binding domain J4N42_20060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_20080 PF07702 UTRA domain J4N42_20080 PF00392 Bacterial regulatory proteins, gntR family J4N42_20085 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_20090 PF00005 ABC transporter J4N42_20100 PF00266 Aminotransferase class-V J4N42_20105 PF00202 Aminotransferase class-III J4N42_20110 PF13419 Haloacid dehalogenase-like hydrolase J4N42_20120 PF03606 C4-dicarboxylate anaerobic carrier J4N42_20140 PF13419 Haloacid dehalogenase-like hydrolase J4N42_20155 PF00465 Iron-containing alcohol dehydrogenase J4N42_20170 PF01810 LysE type translocator J4N42_20175 PF07549 SecD/SecF GG Motif J4N42_20175 PF02355 Protein export membrane protein J4N42_20180 PF07549 SecD/SecF GG Motif J4N42_20180 PF13721 SecD export protein N-terminal TM region J4N42_20180 PF02355 Protein export membrane protein J4N42_20230 PF02272 DHHA1 domain J4N42_20230 PF01411 tRNA synthetases class II (A) J4N42_20230 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J4N42_20285 PF01906 Putative heavy-metal-binding J4N42_20290 PF13673 Acetyltransferase (GNAT) domain J4N42_20295 PF01042 Endoribonuclease L-PSP J4N42_20310 PF00583 Acetyltransferase (GNAT) family J4N42_20315 PF00132 Bacterial transferase hexapeptide (six repeats) J4N42_20315 PF12464 Maltose acetyltransferase J4N42_20370 PF01329 Pterin 4 alpha carbinolamine dehydratase J4N42_20375 PF00351 Biopterin-dependent aromatic amino acid hydroxylase J4N42_20380 PF13193 AMP-binding enzyme C-terminal domain J4N42_20380 PF00501 AMP-binding enzyme J4N42_20385 PF08241 Methyltransferase domain J4N42_20390 PF03466 LysR substrate binding domain J4N42_20390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_20400 PF00892 EamA-like transporter family J4N42_20405 PF00892 EamA-like transporter family J4N42_20420 PF08669 Glycine cleavage T-protein C-terminal barrel domain J4N42_20420 PF01571 Aminomethyltransferase folate-binding domain J4N42_20430 PF00464 Serine hydroxymethyltransferase J4N42_20435 PF01597 Glycine cleavage H-protein J4N42_20440 PF02347 Glycine cleavage system P-protein J4N42_20460 PF00664 ABC transporter transmembrane region J4N42_20460 PF00005 ABC transporter J4N42_20465 PF07702 UTRA domain J4N42_20465 PF00392 Bacterial regulatory proteins, gntR family J4N42_20470 PF02378 Phosphotransferase system, EIIC J4N42_20470 PF00367 phosphotransferase system, EIIB J4N42_20475 PF00251 Glycosyl hydrolases family 32 N-terminal domain J4N42_20475 PF08244 Glycosyl hydrolases family 32 C terminal J4N42_20485 PF00294 pfkB family carbohydrate kinase J4N42_20505 PF03466 LysR substrate binding domain J4N42_20505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_20515 PF03466 LysR substrate binding domain J4N42_20515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_20520 PF00291 Pyridoxal-phosphate dependent enzyme J4N42_20530 PF13508 Acetyltransferase (GNAT) domain J4N42_20540 PF01638 HxlR-like helix-turn-helix J4N42_20550 PF00106 short chain dehydrogenase J4N42_20565 PF00719 Inorganic pyrophosphatase J4N42_20580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_20580 PF00072 Response regulator receiver domain J4N42_20580 PF01627 Hpt domain J4N42_20580 PF00512 His Kinase A (phospho-acceptor) domain J4N42_20580 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J4N42_20580 PF00672 HAMP domain J4N42_20585 PF02811 PHP domain J4N42_20585 PF11490 DNA polymerase III polC-type N-terminus II J4N42_20585 PF00929 Exonuclease J4N42_20585 PF14579 Helix-hairpin-helix motif J4N42_20585 PF07733 Bacterial DNA polymerase III alpha NTPase domain J4N42_20585 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J4N42_20590 PF00271 Helicase conserved C-terminal domain J4N42_20590 PF00270 DEAD/DEAH box helicase J4N42_20595 PF10282 Lactonase, 7-bladed beta-propeller J4N42_20600 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J4N42_20605 PF00672 HAMP domain J4N42_20605 PF01627 Hpt domain J4N42_20605 PF00072 Response regulator receiver domain J4N42_20605 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J4N42_20605 PF00512 His Kinase A (phospho-acceptor) domain J4N42_20605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_20620 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J4N42_20620 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J4N42_20625 PF00728 Glycosyl hydrolase family 20, catalytic domain J4N42_20625 PF02838 Glycosyl hydrolase family 20, domain 2 J4N42_20635 PF01081 KDPG and KHG aldolase J4N42_20640 PF00294 pfkB family carbohydrate kinase J4N42_20645 PF00474 Sodium:solute symporter family J4N42_20655 PF07969 Amidohydrolase family J4N42_20665 PF01418 Helix-turn-helix domain, rpiR family J4N42_20665 PF02685 Glucokinase J4N42_20665 PF01380 SIS domain J4N42_20670 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N42_20670 PF00175 Oxidoreductase NAD-binding domain J4N42_20670 PF00970 Oxidoreductase FAD-binding domain J4N42_20675 PF03063 Prismane/CO dehydrogenase family J4N42_20690 PF01757 Acyltransferase family J4N42_20700 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_20705 PF14785 Maltose transport system permease protein MalF P2 domain J4N42_20705 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_20710 PF01547 Bacterial extracellular solute-binding protein J4N42_20715 PF08402 TOBE domain J4N42_20715 PF00005 ABC transporter J4N42_20720 PF16200 C-terminal region of band_7 J4N42_20720 PF01145 SPFH domain / Band 7 family J4N42_20735 PF01243 Pyridoxamine 5'-phosphate oxidase J4N42_20740 PF06228 Haem utilisation ChuX/HutX J4N42_20745 PF04055 Radical SAM superfamily J4N42_20750 PF03544 Gram-negative bacterial TonB protein C-terminal J4N42_20755 PF01618 MotA/TolQ/ExbB proton channel family J4N42_20760 PF02472 Biopolymer transport protein ExbD/TolR J4N42_20770 PF01032 FecCD transport family J4N42_20775 PF00005 ABC transporter J4N42_20800 PF00563 EAL domain J4N42_20800 PF00990 Diguanylate cyclase, GGDEF domain J4N42_20800 PF03707 Bacterial signalling protein N terminal repeat J4N42_20815 PF03466 LysR substrate binding domain J4N42_20815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_20820 PF00990 Diguanylate cyclase, GGDEF domain J4N42_20820 PF00563 EAL domain J4N42_20820 PF03707 Bacterial signalling protein N terminal repeat J4N42_20830 PF02678 Pirin J4N42_20830 PF05726 Pirin C-terminal cupin domain J4N42_20835 PF06865 Pyrimidine/purine nucleoside phosphorylase J4N42_20845 PF02386 Cation transport protein J4N42_20850 PF02254 TrkA-N domain J4N42_20850 PF02080 TrkA-C domain J4N42_20855 PF00924 Mechanosensitive ion channel J4N42_20860 PF12706 Beta-lactamase superfamily domain J4N42_20870 PF00672 HAMP domain J4N42_20870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_20870 PF17200 Single Cache domain 2 J4N42_20880 PF06761 Intracellular multiplication and human macrophage-killing J4N42_20880 PF14331 ImcF-related N-terminal domain J4N42_20880 PF06744 Type VI secretion protein IcmF C-terminal J4N42_20895 PF00158 Sigma-54 interaction domain J4N42_20895 PF02954 Bacterial regulatory protein, Fis family J4N42_20900 PF10431 C-terminal, D2-small domain, of ClpB protein J4N42_20900 PF17871 AAA lid domain J4N42_20900 PF07724 AAA domain (Cdc48 subfamily) J4N42_20900 PF00004 ATPase family associated with various cellular activities (AAA) J4N42_20910 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE J4N42_20930 PF05947 Type VI secretion system, TssF J4N42_20960 PF01037 Lrp/AsnC ligand binding domain J4N42_20965 PF01810 LysE type translocator J4N42_20970 PF03466 LysR substrate binding domain J4N42_20970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_20975 PF07690 Major Facilitator Superfamily J4N42_20980 PF07943 Penicillin-binding protein 5, C-terminal domain J4N42_20980 PF00768 D-alanyl-D-alanine carboxypeptidase J4N42_20985 PF02875 Mur ligase family, glutamate ligase domain J4N42_20985 PF01225 Mur ligase family, catalytic domain J4N42_20985 PF08245 Mur ligase middle domain J4N42_20990 PF03466 LysR substrate binding domain J4N42_20990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_21000 PF08240 Alcohol dehydrogenase GroES-like domain J4N42_21000 PF00107 Zinc-binding dehydrogenase J4N42_21005 PF00756 Putative esterase J4N42_21020 PF01979 Amidohydrolase family J4N42_21030 PF01979 Amidohydrolase family J4N42_21035 PF12833 Helix-turn-helix domain J4N42_21035 PF02311 AraC-like ligand binding domain J4N42_21040 PF02566 OsmC-like protein J4N42_21045 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J4N42_21060 PF00155 Aminotransferase class I and II J4N42_21060 PF00392 Bacterial regulatory proteins, gntR family J4N42_21070 PF13520 Amino acid permease J4N42_21075 PF13091 PLD-like domain J4N42_21085 PF00881 Nitroreductase family J4N42_21095 PF03459 TOBE domain J4N42_21095 PF00005 ABC transporter J4N42_21100 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_21110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_21110 PF03459 TOBE domain J4N42_21115 PF12833 Helix-turn-helix domain J4N42_21130 PF03448 MgtE intracellular N domain J4N42_21130 PF01769 Divalent cation transporter J4N42_21130 PF00571 CBS domain J4N42_21140 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin J4N42_21145 PF07969 Amidohydrolase family J4N42_21160 PF02540 NAD synthase J4N42_21175 PF02397 Bacterial sugar transferase J4N42_21190 PF02706 Chain length determinant protein J4N42_21190 PF13807 G-rich domain on putative tyrosine kinase J4N42_21190 PF13614 AAA domain J4N42_21195 PF01370 NAD dependent epimerase/dehydratase family J4N42_21210 PF01943 Polysaccharide biosynthesis protein J4N42_21220 PF00535 Glycosyl transferase family 2 J4N42_21225 PF00535 Glycosyl transferase family 2 J4N42_21230 PF00535 Glycosyl transferase family 2 J4N42_21235 PF00722 Glycosyl hydrolases family 16 J4N42_21250 PF00005 ABC transporter J4N42_21255 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N42_21255 PF00529 HlyD membrane-fusion protein of T1SS J4N42_21265 PF00196 Bacterial regulatory proteins, luxR family J4N42_21270 PF00196 Bacterial regulatory proteins, luxR family J4N42_21275 PF00202 Aminotransferase class-III J4N42_21280 PF05853 beta-keto acid cleavage enzyme J4N42_21285 PF16868 NMT1-like family J4N42_21290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_21290 PF03466 LysR substrate binding domain J4N42_21305 PF00881 Nitroreductase family J4N42_21330 PF00849 RNA pseudouridylate synthase J4N42_21335 PF00005 ABC transporter J4N42_21340 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_21345 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_21350 PF12849 PBP superfamily domain J4N42_21355 PF17200 Single Cache domain 2 J4N42_21355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_21355 PF00672 HAMP domain J4N42_21360 PF00271 Helicase conserved C-terminal domain J4N42_21360 PF00270 DEAD/DEAH box helicase J4N42_21370 PF01476 LysM domain J4N42_21370 PF03734 L,D-transpeptidase catalytic domain J4N42_21370 PF17969 L,D-transpeptidase C-terminal domain J4N42_21375 PF01048 Phosphorylase superfamily J4N42_21390 PF00990 Diguanylate cyclase, GGDEF domain J4N42_21400 PF11742 Protein of unknown function (DUF3302) J4N42_21405 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N42_21405 PF00529 HlyD membrane-fusion protein of T1SS J4N42_21415 PF00990 Diguanylate cyclase, GGDEF domain J4N42_21420 PF01380 SIS domain J4N42_21420 PF01418 Helix-turn-helix domain, rpiR family J4N42_21425 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J4N42_21430 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component J4N42_21435 PF03480 Bacterial extracellular solute-binding protein, family 7 J4N42_21440 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase J4N42_21445 PF00480 ROK family J4N42_21450 PF01979 Amidohydrolase family J4N42_21455 PF03616 Sodium/glutamate symporter J4N42_21460 PF12945 Flagellar protein YcgR J4N42_21460 PF07238 PilZ domain J4N42_21465 PF00884 Sulfatase J4N42_21465 PF08019 Phosphoethanolamine transferase EptA/EptB J4N42_21475 PF00106 short chain dehydrogenase J4N42_21480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_21480 PF03466 LysR substrate binding domain J4N42_21490 PF00072 Response regulator receiver domain J4N42_21490 PF00486 Transcriptional regulatory protein, C terminal J4N42_21495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_21495 PF00672 HAMP domain J4N42_21495 PF00512 His Kinase A (phospho-acceptor) domain J4N42_21500 PF03466 LysR substrate binding domain J4N42_21500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_21505 PF00376 MerR family regulatory protein J4N42_21505 PF09278 MerR, DNA binding J4N42_21515 PF00375 Sodium:dicarboxylate symporter family J4N42_21520 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase J4N42_21525 PF00171 Aldehyde dehydrogenase family J4N42_21530 PF03466 LysR substrate binding domain J4N42_21530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_21535 PF02678 Pirin J4N42_21535 PF17954 Quercetinase C-terminal cupin domain J4N42_21540 PF00857 Isochorismatase family J4N42_21565 PF01212 Beta-eliminating lyase J4N42_21600 PF08281 Sigma-70, region 4 J4N42_21600 PF04542 Sigma-70 region 2 J4N42_21635 PF01569 PAP2 superfamily J4N42_21645 PF17810 Arginine decarboxylase helical bundle domain J4N42_21645 PF17944 Arginine decarboxylase C-terminal helical extension J4N42_21645 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J4N42_21650 PF00491 Arginase family J4N42_21655 PF00128 Alpha amylase, catalytic domain J4N42_21655 PF02806 Alpha amylase, C-terminal all-beta domain J4N42_21655 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J4N42_21660 PF02446 4-alpha-glucanotransferase J4N42_21665 PF00343 Carbohydrate phosphorylase J4N42_21670 PF17874 MalT-like TPR region J4N42_21670 PF00196 Bacterial regulatory proteins, luxR family J4N42_21675 PF00356 Bacterial regulatory proteins, lacI family J4N42_21695 PF02929 Beta galactosidase small chain J4N42_21695 PF16353 Domain of unknown function(DUF4981) J4N42_21695 PF00703 Glycosyl hydrolases family 2 J4N42_21695 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J4N42_21695 PF02837 Glycosyl hydrolases family 2, sugar binding domain J4N42_21730 PF00293 NUDIX domain J4N42_21740 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N42_21765 PF02567 Phenazine biosynthesis-like protein J4N42_21820 PF00528 Binding-protein-dependent transport system inner membrane component J4N42_21825 PF00005 ABC transporter J4N42_21835 PF00465 Iron-containing alcohol dehydrogenase J4N42_21840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_21840 PF03466 LysR substrate binding domain J4N42_21870 PF16347 Domain of unknown function (DUF4976) J4N42_21870 PF00884 Sulfatase J4N42_21875 PF00933 Glycosyl hydrolase family 3 N terminal domain J4N42_21875 PF14310 Fibronectin type III-like domain J4N42_21875 PF01915 Glycosyl hydrolase family 3 C-terminal domain J4N42_21880 PF04055 Radical SAM superfamily J4N42_21880 PF13186 Iron-sulfur cluster-binding domain J4N42_21895 PF00271 Helicase conserved C-terminal domain J4N42_21895 PF00270 DEAD/DEAH box helicase J4N42_21900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_21900 PF03466 LysR substrate binding domain J4N42_21915 PF07690 Major Facilitator Superfamily J4N42_21920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_21920 PF03466 LysR substrate binding domain J4N42_21925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_21925 PF03466 LysR substrate binding domain J4N42_21935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_21935 PF03466 LysR substrate binding domain J4N42_21940 PF11975 Family 4 glycosyl hydrolase C-terminal domain J4N42_21940 PF02056 Family 4 glycosyl hydrolase J4N42_21945 PF04794 YdjC-like protein J4N42_21950 PF00583 Acetyltransferase (GNAT) family J4N42_21955 PF07694 5TMR of 5TMR-LYT J4N42_21955 PF00990 Diguanylate cyclase, GGDEF domain J4N42_21960 PF08173 Membrane bound YbgT-like protein J4N42_21965 PF02322 Cytochrome bd terminal oxidase subunit II J4N42_21970 PF01654 Cytochrome bd terminal oxidase subunit I J4N42_21985 PF05114 Protein of unknown function (DUF692) J4N42_22000 PF00392 Bacterial regulatory proteins, gntR family J4N42_22000 PF07702 UTRA domain J4N42_22005 PF07690 Major Facilitator Superfamily J4N42_22010 PF00294 pfkB family carbohydrate kinase J4N42_22015 PF03747 ADP-ribosylglycohydrolase J4N42_22020 PF03825 Nucleoside H+ symporter J4N42_22035 PF14864 Alkyl sulfatase C-terminal J4N42_22035 PF14863 Alkyl sulfatase dimerisation J4N42_22035 PF00753 Metallo-beta-lactamase superfamily J4N42_22055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_22055 PF03466 LysR substrate binding domain J4N42_22060 PF00486 Transcriptional regulatory protein, C terminal J4N42_22060 PF00072 Response regulator receiver domain J4N42_22065 PF00512 His Kinase A (phospho-acceptor) domain J4N42_22065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_22065 PF18719 ArlS sensor domain J4N42_22075 PF04076 Bacterial OB fold (BOF) protein J4N42_22090 PF14765 Polyketide synthase dehydratase J4N42_22090 PF16197 Ketoacyl-synthetase C-terminal extension J4N42_22090 PF00109 Beta-ketoacyl synthase, N-terminal domain J4N42_22090 PF02801 Beta-ketoacyl synthase, C-terminal domain J4N42_22090 PF08659 KR domain J4N42_22090 PF00550 Phosphopantetheine attachment site J4N42_22090 PF00698 Acyl transferase domain J4N42_22090 PF08240 Alcohol dehydrogenase GroES-like domain J4N42_22095 PF00005 ABC transporter J4N42_22100 PF01032 FecCD transport family J4N42_22105 PF01032 FecCD transport family J4N42_22110 PF01497 Periplasmic binding protein J4N42_22115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_22115 PF03466 LysR substrate binding domain J4N42_22120 PF00593 TonB dependent receptor J4N42_22120 PF07715 TonB-dependent Receptor Plug Domain J4N42_22125 PF06224 Winged helix DNA-binding domain J4N42_22130 PF07690 Major Facilitator Superfamily J4N42_22145 PF01081 KDPG and KHG aldolase J4N42_22150 PF00294 pfkB family carbohydrate kinase J4N42_22155 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 J4N42_22155 PF00367 phosphotransferase system, EIIB J4N42_22155 PF02378 Phosphotransferase system, EIIC J4N42_22160 PF13378 Enolase C-terminal domain-like J4N42_22160 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J4N42_22165 PF07702 UTRA domain J4N42_22165 PF00392 Bacterial regulatory proteins, gntR family J4N42_22185 PF00356 Bacterial regulatory proteins, lacI family J4N42_22205 PF00474 Sodium:solute symporter family J4N42_22210 PF03313 Serine dehydratase alpha chain J4N42_22210 PF03315 Serine dehydratase beta chain J4N42_22220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_22220 PF03466 LysR substrate binding domain J4N42_22230 PF03606 C4-dicarboxylate anaerobic carrier J4N42_22235 PF01546 Peptidase family M20/M25/M40 J4N42_22235 PF07687 Peptidase dimerisation domain J4N42_22240 PF00392 Bacterial regulatory proteins, gntR family J4N42_22240 PF07729 FCD domain J4N42_22245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N42_22245 PF00512 His Kinase A (phospho-acceptor) domain J4N42_22245 PF00072 Response regulator receiver domain J4N42_22245 PF09308 LuxQ, periplasmic J4N42_22270 PF00107 Zinc-binding dehydrogenase J4N42_22270 PF08240 Alcohol dehydrogenase GroES-like domain J4N42_22275 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N42_22275 PF02378 Phosphotransferase system, EIIC J4N42_22280 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N42_22290 PF02378 Phosphotransferase system, EIIC J4N42_22290 PF00367 phosphotransferase system, EIIB J4N42_22295 PF01546 Peptidase family M20/M25/M40 J4N42_22300 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) J4N42_22305 PF02779 Transketolase, pyrimidine binding domain J4N42_22305 PF00456 Transketolase, thiamine diphosphate binding domain J4N42_22305 PF02780 Transketolase, C-terminal domain J4N42_22310 PF00923 Transaldolase/Fructose-6-phosphate aldolase J4N42_22315 PF13419 Haloacid dehalogenase-like hydrolase J4N42_22320 PF00465 Iron-containing alcohol dehydrogenase J4N42_22335 PF00455 DeoR C terminal sensor domain J4N42_22335 PF08220 DeoR-like helix-turn-helix domain J4N42_22345 PF10928 Protein of unknown function (DUF2810) J4N42_22350 PF00132 Bacterial transferase hexapeptide (six repeats) J4N42_22365 PF17200 Single Cache domain 2 J4N42_22365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N42_22365 PF00672 HAMP domain J4N42_22370 PF01546 Peptidase family M20/M25/M40 J4N42_22375 PF01103 Surface antigen J4N42_22375 PF07244 Surface antigen variable number repeat J4N42_22375 PF17243 POTRA domain TamA domain 1 J4N42_22380 PF07969 Amidohydrolase family J4N42_22390 PF03466 LysR substrate binding domain J4N42_22390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_22395 PF13091 PLD-like domain J4N42_22415 PF13533 Biotin-lipoyl like J4N42_22425 PF00135 Carboxylesterase family J4N42_22435 PF03458 UPF0126 domain J4N42_22455 PF13599 Pentapeptide repeats (9 copies) J4N42_22465 PF13237 4Fe-4S dicluster domain J4N42_22465 PF12801 4Fe-4S binding domain J4N42_22470 PF12800 4Fe-4S binding domain J4N42_22470 PF12838 4Fe-4S dicluster domain J4N42_22475 PF01810 LysE type translocator J4N42_22480 PF03466 LysR substrate binding domain J4N42_22480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_22490 PF01965 DJ-1/PfpI family J4N42_22490 PF12833 Helix-turn-helix domain J4N42_22505 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J4N42_22505 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J4N42_22510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N42_22510 PF03466 LysR substrate binding domain J4N42_22520 PF01709 Transcriptional regulator J4N42_22535 PF00005 ABC transporter J4N42_22535 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N42_22540 PF00005 ABC transporter J4N42_22540 PF08352 Oligopeptide/dipeptide transporter, C-terminal region