locus-tag class description J4N39_00005 PF00308 Bacterial dnaA protein J4N39_00005 PF08299 Bacterial dnaA protein helix-turn-helix J4N39_00005 PF11638 DnaA N-terminal domain J4N39_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain J4N39_00010 PF02767 DNA polymerase III beta subunit, central domain J4N39_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain J4N39_00015 PF02463 RecF/RecN/SMC N terminal domain J4N39_00020 PF00204 DNA gyrase B J4N39_00020 PF00986 DNA gyrase B subunit, carboxyl terminus J4N39_00020 PF18053 DNA gyrase B subunit insert domain J4N39_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_00020 PF01751 Toprim domain J4N39_00025 PF07690 Major Facilitator Superfamily J4N39_00030 PF03466 LysR substrate binding domain J4N39_00030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_00035 PF00291 Pyridoxal-phosphate dependent enzyme J4N39_00035 PF00585 C-terminal regulatory domain of Threonine dehydratase J4N39_00040 PF00920 Dehydratase family J4N39_00045 PF01063 Amino-transferase class IV J4N39_00055 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J4N39_00055 PF00205 Thiamine pyrophosphate enzyme, central domain J4N39_00055 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J4N39_00060 PF01078 Magnesium chelatase, subunit ChlI J4N39_00060 PF13335 Magnesium chelatase, subunit ChlI C-terminal J4N39_00070 PF01553 Acyltransferase J4N39_00075 PF01323 DSBA-like thioredoxin domain J4N39_00080 PF01636 Phosphotransferase enzyme family J4N39_00085 PF13746 4Fe-4S dicluster domain J4N39_00085 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase J4N39_00085 PF12801 4Fe-4S binding domain J4N39_00090 PF06288 Protein of unknown function (DUF1040) J4N39_00100 PF07070 SpoOM protein J4N39_00105 PF03006 Haemolysin-III related J4N39_00110 PF02386 Cation transport protein J4N39_00115 PF02080 TrkA-C domain J4N39_00115 PF02254 TrkA-N domain J4N39_00120 PF01189 16S rRNA methyltransferase RsmB/F J4N39_00120 PF01029 NusB family J4N39_00125 PF02911 Formyl transferase, C-terminal domain J4N39_00125 PF00551 Formyl transferase J4N39_00130 PF01327 Polypeptide deformylase J4N39_00135 PF01476 LysM domain J4N39_00140 PF02481 DNA recombination-mediator protein A J4N39_00140 PF17782 DprA winged helix domain J4N39_00145 PF04361 Protein of unknown function (DUF494) J4N39_00150 PF01396 Topoisomerase DNA binding C4 zinc finger J4N39_00155 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain J4N39_00155 PF02222 ATP-grasp domain J4N39_00160 PF00731 AIR carboxylase J4N39_00165 PF01300 Telomere recombination J4N39_00170 PF01218 Coproporphyrinogen III oxidase J4N39_00175 PF18317 Shikimate 5'-dehydrogenase C-terminal domain J4N39_00175 PF01488 Shikimate / quinate 5-dehydrogenase J4N39_00175 PF08501 Shikimate dehydrogenase substrate binding domain J4N39_00185 PF00132 Bacterial transferase hexapeptide (six repeats) J4N39_00240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_00240 PF03466 LysR substrate binding domain J4N39_00245 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain J4N39_00245 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain J4N39_00250 PF01810 LysE type translocator J4N39_00255 PF00892 EamA-like transporter family J4N39_00260 PF00570 HRDC domain J4N39_00260 PF09382 RQC domain J4N39_00260 PF00271 Helicase conserved C-terminal domain J4N39_00260 PF16124 RecQ zinc-binding J4N39_00260 PF00270 DEAD/DEAH box helicase J4N39_00270 PF02592 Putative vitamin uptake transporter J4N39_00280 PF02541 Ppx/GppA phosphatase family J4N39_00285 PF00271 Helicase conserved C-terminal domain J4N39_00285 PF00270 DEAD/DEAH box helicase J4N39_00290 PF00085 Thioredoxin J4N39_00295 PF07497 Rho termination factor, RNA-binding domain J4N39_00295 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N39_00295 PF07498 Rho termination factor, N-terminal domain J4N39_00305 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase J4N39_00310 PF00175 Oxidoreductase NAD-binding domain J4N39_00310 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N39_00310 PF00970 Oxidoreductase FAD-binding domain J4N39_00315 PF00175 Oxidoreductase NAD-binding domain J4N39_00355 PF04545 Sigma-70, region 4 J4N39_00355 PF04542 Sigma-70 region 2 J4N39_00370 PF07719 Tetratricopeptide repeat J4N39_00370 PF07219 HemY protein N-terminus J4N39_00375 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase J4N39_00380 PF02602 Uroporphyrinogen-III synthase HemD J4N39_00385 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain J4N39_00385 PF03900 Porphobilinogen deaminase, C-terminal domain J4N39_00390 PF12633 Adenylate cyclase NT domain J4N39_00390 PF01295 Adenylate cyclase, class-I J4N39_00395 PF01491 Frataxin-like domain J4N39_00405 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J4N39_00405 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain J4N39_00410 PF01678 Diaminopimelate epimerase J4N39_00420 PF02899 Phage integrase, N-terminal SAM-like domain J4N39_00420 PF00589 Phage integrase family J4N39_00425 PF13419 Haloacid dehalogenase-like hydrolase J4N39_00430 PF10442 FIST C domain J4N39_00430 PF00563 EAL domain J4N39_00430 PF08495 FIST N domain J4N39_00430 PF00990 Diguanylate cyclase, GGDEF domain J4N39_00455 PF12146 Serine aminopeptidase, S33 J4N39_00460 PF01810 LysE type translocator J4N39_00465 PF08668 HDOD domain J4N39_00465 PF00563 EAL domain J4N39_00470 PF01022 Bacterial regulatory protein, arsR family J4N39_00475 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J4N39_00475 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J4N39_00515 PF01914 MarC family integral membrane protein J4N39_00530 PF02881 SRP54-type protein, helical bundle domain J4N39_00530 PF00448 SRP54-type protein, GTPase domain J4N39_00535 PF00005 ABC transporter J4N39_00540 PF18075 FtsX extracellular domain J4N39_00545 PF00140 Sigma-70 factor, region 1.2 J4N39_00545 PF04545 Sigma-70, region 4 J4N39_00545 PF04542 Sigma-70 region 2 J4N39_00550 PF00581 Rhodanese-like domain J4N39_00555 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease J4N39_00555 PF01694 Rhomboid family J4N39_00565 PF04345 Chorismate lyase J4N39_00570 PF01040 UbiA prenyltransferase family J4N39_00575 PF01553 Acyltransferase J4N39_00580 PF00717 Peptidase S24-like J4N39_00580 PF01726 LexA DNA binding domain J4N39_00585 PF04072 Leucine carboxyl methyltransferase J4N39_00590 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N39_00590 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4N39_00600 PF11953 Domain of unknown function (DUF3470) J4N39_00600 PF00037 4Fe-4S binding domain J4N39_00605 PF00588 SpoU rRNA Methylase family J4N39_00605 PF08032 RNA 2'-O ribose methyltransferase substrate binding J4N39_00610 PF00440 Bacterial regulatory proteins, tetR family J4N39_00615 PF07226 Protein of unknown function (DUF1422) J4N39_00620 PF05958 tRNA (Uracil-5-)-methyltransferase J4N39_00625 PF00593 TonB dependent receptor J4N39_00625 PF07715 TonB-dependent Receptor Plug Domain J4N39_00635 PF01177 Asp/Glu/Hydantoin racemase J4N39_00725 PF13091 PLD-like domain J4N39_00735 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain J4N39_00735 PF01565 FAD binding domain J4N39_00740 PF03099 Biotin/lipoate A/B protein ligase family J4N39_00740 PF02237 Biotin protein ligase C terminal domain J4N39_00740 PF08279 HTH domain J4N39_00745 PF00485 Phosphoribulokinase / Uridine kinase family J4N39_00770 PF03144 Elongation factor Tu domain 2 J4N39_00770 PF00009 Elongation factor Tu GTP binding domain J4N39_00770 PF03143 Elongation factor Tu C-terminal domain J4N39_00775 PF00584 SecE/Sec61-gamma subunits of protein translocation complex J4N39_00780 PF02357 Transcription termination factor nusG J4N39_00780 PF00467 KOW motif J4N39_00785 PF00298 Ribosomal protein L11, RNA binding domain J4N39_00785 PF03946 Ribosomal protein L11, N-terminal domain J4N39_00790 PF00687 Ribosomal protein L1p/L10e family J4N39_00795 PF00466 Ribosomal protein L10 J4N39_00800 PF16320 Ribosomal protein L7/L12 dimerisation domain J4N39_00800 PF00542 Ribosomal protein L7/L12 C-terminal domain J4N39_00805 PF04565 RNA polymerase Rpb2, domain 3 J4N39_00805 PF10385 RNA polymerase beta subunit external 1 domain J4N39_00805 PF00562 RNA polymerase Rpb2, domain 6 J4N39_00805 PF04563 RNA polymerase beta subunit J4N39_00805 PF04560 RNA polymerase Rpb2, domain 7 J4N39_00805 PF04561 RNA polymerase Rpb2, domain 2 J4N39_00810 PF04997 RNA polymerase Rpb1, domain 1 J4N39_00810 PF00623 RNA polymerase Rpb1, domain 2 J4N39_00810 PF04983 RNA polymerase Rpb1, domain 3 J4N39_00810 PF04998 RNA polymerase Rpb1, domain 5 J4N39_00810 PF05000 RNA polymerase Rpb1, domain 4 J4N39_00815 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ J4N39_00820 PF09297 NADH pyrophosphatase zinc ribbon domain J4N39_00820 PF00293 NUDIX domain J4N39_00825 PF01208 Uroporphyrinogen decarboxylase (URO-D) J4N39_00830 PF03167 Uracil DNA glycosylase superfamily J4N39_00835 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N39_00840 PF04222 Protein of unknown function (DUF416) J4N39_00845 PF05525 Branched-chain amino acid transport protein J4N39_00850 PF00571 CBS domain J4N39_00850 PF01595 Cyclin M transmembrane N-terminal domain J4N39_00855 PF00216 Bacterial DNA-binding protein J4N39_00865 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain J4N39_00865 PF02843 Phosphoribosylglycinamide synthetase, C domain J4N39_00865 PF02844 Phosphoribosylglycinamide synthetase, N domain J4N39_00870 PF01808 AICARFT/IMPCHase bienzyme J4N39_00870 PF02142 MGS-like domain J4N39_00875 PF13411 MerR HTH family regulatory protein J4N39_00880 PF00672 HAMP domain J4N39_00880 PF17200 Single Cache domain 2 J4N39_00880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_00885 PF02954 Bacterial regulatory protein, Fis family J4N39_00890 PF01207 Dihydrouridine synthase (Dus) J4N39_00900 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J4N39_00900 PF02785 Biotin carboxylase C-terminal domain J4N39_00900 PF00289 Biotin carboxylase, N-terminal domain J4N39_00905 PF00364 Biotin-requiring enzyme J4N39_00910 PF01220 Dehydroquinase class II J4N39_00915 PF16177 Acetyl-coenzyme A synthetase N-terminus J4N39_00915 PF00501 AMP-binding enzyme J4N39_00915 PF13193 AMP-binding enzyme C-terminal domain J4N39_00930 PF12832 MFS_1 like family J4N39_00935 PF00672 HAMP domain J4N39_00935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_00935 PF00512 His Kinase A (phospho-acceptor) domain J4N39_00935 PF01627 Hpt domain J4N39_00935 PF00072 Response regulator receiver domain J4N39_00940 PF00474 Sodium:solute symporter family J4N39_00950 PF01914 MarC family integral membrane protein J4N39_00955 PF00196 Bacterial regulatory proteins, luxR family J4N39_00955 PF00072 Response regulator receiver domain J4N39_00960 PF11412 Disulphide bond corrector protein DsbC J4N39_00960 PF02683 Cytochrome C biogenesis protein transmembrane region J4N39_00965 PF03605 Anaerobic c4-dicarboxylate membrane transporter J4N39_00970 PF00206 Lyase J4N39_00970 PF10415 Fumarase C C-terminus J4N39_00975 PF04186 FxsA cytoplasmic membrane protein J4N39_00980 PF00588 SpoU rRNA Methylase family J4N39_00985 PF00512 His Kinase A (phospho-acceptor) domain J4N39_00985 PF00672 HAMP domain J4N39_00985 PF16527 Two-component sensor protein CpxA, periplasmic domain J4N39_00985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_00990 PF00486 Transcriptional regulatory protein, C terminal J4N39_00990 PF00072 Response regulator receiver domain J4N39_01000 PF01545 Cation efflux family J4N39_01000 PF16916 Dimerisation domain of Zinc Transporter J4N39_01005 PF00365 Phosphofructokinase J4N39_01020 PF01758 Sodium Bile acid symporter family J4N39_01025 PF00121 Triosephosphate isomerase J4N39_01050 PF13419 Haloacid dehalogenase-like hydrolase J4N39_01055 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded J4N39_01060 PF06005 Cell division protein ZapB J4N39_01065 PF03737 Aldolase/RraA J4N39_01070 PF01040 UbiA prenyltransferase family J4N39_01075 PF07724 AAA domain (Cdc48 subfamily) J4N39_01075 PF00004 ATPase family associated with various cellular activities (AAA) J4N39_01080 PF00227 Proteasome subunit J4N39_01085 PF00753 Metallo-beta-lactamase superfamily J4N39_01095 PF00356 Bacterial regulatory proteins, lacI family J4N39_01100 PF00271 Helicase conserved C-terminal domain J4N39_01100 PF18074 Primosomal protein N C-terminal domain J4N39_01100 PF18319 PriA DNA helicase Cys-rich region (CRR) domain J4N39_01100 PF17764 3′ DNA-binding domain (3′BD) J4N39_01100 PF00270 DEAD/DEAH box helicase J4N39_01105 PF01197 Ribosomal protein L31 J4N39_01110 PF00390 Malic enzyme, N-terminal domain J4N39_01110 PF03949 Malic enzyme, NAD binding domain J4N39_01115 PF01340 Met Apo-repressor, MetJ J4N39_01120 PF01053 Cys/Met metabolism PLP-dependent enzyme J4N39_01125 PF00696 Amino acid kinase family J4N39_01125 PF03447 Homoserine dehydrogenase, NAD binding domain J4N39_01125 PF00742 Homoserine dehydrogenase J4N39_01130 PF02219 Methylenetetrahydrofolate reductase J4N39_01140 PF00311 Phosphoenolpyruvate carboxylase J4N39_01145 PF07687 Peptidase dimerisation domain J4N39_01145 PF01546 Peptidase family M20/M25/M40 J4N39_01150 PF01118 Semialdehyde dehydrogenase, NAD binding domain J4N39_01150 PF02774 Semialdehyde dehydrogenase, dimerisation domain J4N39_01155 PF00696 Amino acid kinase family J4N39_01160 PF00764 Arginosuccinate synthase J4N39_01165 PF00206 Lyase J4N39_01165 PF14698 Argininosuccinate lyase C-terminal J4N39_01165 PF00583 Acetyltransferase (GNAT) family J4N39_01175 PF00462 Glutaredoxin J4N39_01175 PF08534 Redoxin J4N39_01180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_01180 PF03466 LysR substrate binding domain J4N39_01185 PF00905 Penicillin binding protein transpeptidase domain J4N39_01185 PF17092 Penicillin-binding protein OB-like domain J4N39_01185 PF00912 Transglycosylase J4N39_01210 PF00263 Bacterial type II and III secretion system protein J4N39_01210 PF03958 Bacterial type II/III secretion system short domain J4N39_01210 PF07660 Secretin and TonB N terminus short domain J4N39_01210 PF11741 AMIN domain J4N39_01215 PF01202 Shikimate kinase J4N39_01220 PF01761 3-dehydroquinate synthase J4N39_01230 PF02086 D12 class N6 adenine-specific DNA methyltransferase J4N39_01235 PF00834 Ribulose-phosphate 3 epimerase family J4N39_01240 PF13419 Haloacid dehalogenase-like hydrolase J4N39_01245 PF00579 tRNA synthetases class I (W and Y) J4N39_01250 PF13609 Gram-negative porin J4N39_01260 PF00117 Glutamine amidotransferase class-I J4N39_01265 PF00202 Aminotransferase class-III J4N39_01270 PF04958 Arginine N-succinyltransferase beta subunit J4N39_01275 PF00171 Aldehyde dehydrogenase family J4N39_01285 PF13545 Crp-like helix-turn-helix domain J4N39_01285 PF00027 Cyclic nucleotide-binding domain J4N39_01290 PF00485 Phosphoribulokinase / Uridine kinase family J4N39_01295 PF06794 Uncharacterised protein family (UPF0270) J4N39_01300 PF00561 alpha/beta hydrolase fold J4N39_01310 PF12848 ABC transporter J4N39_01310 PF00005 ABC transporter J4N39_01315 PF02525 Flavodoxin-like fold J4N39_01320 PF02254 TrkA-N domain J4N39_01320 PF00999 Sodium/hydrogen exchanger family J4N39_01330 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N39_01335 PF04102 SlyX J4N39_01345 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J4N39_01345 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N39_01350 PF13309 HTH domain J4N39_01350 PF08348 YheO-like PAS domain J4N39_01355 PF02635 DsrE/DsrF-like family J4N39_01360 PF02635 DsrE/DsrF-like family J4N39_01370 PF00164 Ribosomal protein S12/S23 J4N39_01375 PF00177 Ribosomal protein S7p/S5e J4N39_01380 PF00679 Elongation factor G C-terminus J4N39_01380 PF14492 Elongation Factor G, domain II J4N39_01380 PF03764 Elongation factor G, domain IV J4N39_01380 PF00009 Elongation factor Tu GTP binding domain J4N39_01380 PF03144 Elongation factor Tu domain 2 J4N39_01385 PF03144 Elongation factor Tu domain 2 J4N39_01385 PF00009 Elongation factor Tu GTP binding domain J4N39_01385 PF03143 Elongation factor Tu C-terminal domain J4N39_01390 PF04324 BFD-like [2Fe-2S] binding domain J4N39_01395 PF00210 Ferritin-like domain J4N39_01400 PF00338 Ribosomal protein S10p/S20e J4N39_01405 PF00297 Ribosomal protein L3 J4N39_01410 PF00573 Ribosomal protein L4/L1 family J4N39_01415 PF00276 Ribosomal protein L23 J4N39_01420 PF00181 Ribosomal Proteins L2, RNA binding domain J4N39_01420 PF03947 Ribosomal Proteins L2, C-terminal domain J4N39_01425 PF00203 Ribosomal protein S19 J4N39_01430 PF00237 Ribosomal protein L22p/L17e J4N39_01435 PF07650 KH domain J4N39_01435 PF00189 Ribosomal protein S3, C-terminal domain J4N39_01440 PF00252 Ribosomal protein L16p/L10e J4N39_01445 PF00831 Ribosomal L29 protein J4N39_01450 PF00366 Ribosomal protein S17 J4N39_01455 PF00238 Ribosomal protein L14p/L23e J4N39_01460 PF00467 KOW motif J4N39_01460 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 J4N39_01465 PF00281 Ribosomal protein L5 J4N39_01465 PF00673 ribosomal L5P family C-terminus J4N39_01470 PF00253 Ribosomal protein S14p/S29e J4N39_01475 PF00410 Ribosomal protein S8 J4N39_01480 PF00347 Ribosomal protein L6 J4N39_01485 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast J4N39_01490 PF00333 Ribosomal protein S5, N-terminal domain J4N39_01490 PF03719 Ribosomal protein S5, C-terminal domain J4N39_01495 PF00327 Ribosomal protein L30p/L7e J4N39_01500 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A J4N39_01505 PF00344 SecY translocase J4N39_01510 PF00444 Ribosomal protein L36 J4N39_01515 PF00416 Ribosomal protein S13/S18 J4N39_01520 PF00411 Ribosomal protein S11 J4N39_01525 PF01479 S4 domain J4N39_01525 PF00163 Ribosomal protein S4/S9 N-terminal domain J4N39_01530 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain J4N39_01530 PF01000 RNA polymerase Rpb3/RpoA insert domain J4N39_01530 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain J4N39_01535 PF01196 Ribosomal protein L17 J4N39_01540 PF01053 Cys/Met metabolism PLP-dependent enzyme J4N39_01550 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N39_01550 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J4N39_01560 PF13673 Acetyltransferase (GNAT) domain J4N39_01565 PF02872 5'-nucleotidase, C-terminal domain J4N39_01565 PF00149 Calcineurin-like phosphoesterase J4N39_01570 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N39_01570 PF14824 Sirohaem biosynthesis protein central J4N39_01570 PF10414 Sirohaem synthase dimerisation region J4N39_01575 PF01507 Phosphoadenosine phosphosulfate reductase family J4N39_01580 PF00009 Elongation factor Tu GTP binding domain J4N39_01585 PF03600 Citrate transporter J4N39_01585 PF02080 TrkA-C domain J4N39_01610 PF02687 FtsX-like permease family J4N39_01610 PF00005 ABC transporter J4N39_01610 PF12704 MacB-like periplasmic core domain J4N39_01620 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain J4N39_01620 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain J4N39_01625 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J4N39_01625 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J4N39_01630 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J4N39_01630 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J4N39_01640 PF06877 Regulator of ribonuclease activity B J4N39_01650 PF05987 Bacterial protein of unknown function (DUF898) J4N39_01670 PF08264 Anticodon-binding domain of tRNA J4N39_01670 PF00133 tRNA synthetases class I (I, L, M and V) J4N39_01670 PF10458 Valyl tRNA synthetase tRNA binding arm J4N39_01675 PF04364 DNA polymerase III chi subunit, HolC J4N39_01680 PF02789 Cytosol aminopeptidase family, N-terminal domain J4N39_01680 PF00883 Cytosol aminopeptidase family, catalytic domain J4N39_01685 PF03739 Lipopolysaccharide export system permease LptF/LptG J4N39_01690 PF03739 Lipopolysaccharide export system permease LptF/LptG J4N39_01715 PF00990 Diguanylate cyclase, GGDEF domain J4N39_01715 PF13185 GAF domain J4N39_01730 PF00072 Response regulator receiver domain J4N39_01785 PF12833 Helix-turn-helix domain J4N39_01790 PF07690 Major Facilitator Superfamily J4N39_01820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_01820 PF00672 HAMP domain J4N39_01820 PF12729 Four helix bundle sensory module for signal transduction J4N39_01860 PF01464 Transglycosylase SLT domain J4N39_01860 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain J4N39_01865 PF04362 Bacterial Fe(2+) trafficking J4N39_01870 PF14815 NUDIX domain J4N39_01870 PF00633 Helix-hairpin-helix motif J4N39_01870 PF10576 Iron-sulfur binding domain of endonuclease III J4N39_01870 PF00730 HhH-GPD superfamily base excision DNA repair protein J4N39_01875 PF02390 Putative methyltransferase J4N39_01880 PF04960 Glutaminase J4N39_01885 PF00672 HAMP domain J4N39_01885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_01895 PF06969 HemN C-terminal domain J4N39_01895 PF04055 Radical SAM superfamily J4N39_01900 PF01725 Ham1 family J4N39_01915 PF05973 Phage derived protein Gp49-like (DUF891) J4N39_01920 PF02594 Uncharacterised ACR, YggU family COG1872 J4N39_01925 PF02325 YGGT family J4N39_01930 PF03807 NADP oxidoreductase coenzyme F420-dependent J4N39_01930 PF14748 Pyrroline-5-carboxylate reductase dimerisation J4N39_01935 PF01168 Alanine racemase, N-terminal domain J4N39_01940 PF00437 Type II/IV secretion system protein J4N39_01945 PF00437 Type II/IV secretion system protein J4N39_01950 PF03652 Holliday junction resolvase J4N39_01955 PF02622 Uncharacterized ACR, COG1678 J4N39_01960 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain J4N39_01960 PF02951 Prokaryotic glutathione synthetase, N-terminal domain J4N39_01965 PF04452 RNA methyltransferase J4N39_01970 PF04231 Endonuclease I J4N39_01975 PF10263 SprT-like family J4N39_01975 PF17283 SprT-like zinc ribbon domain J4N39_01985 PF02773 S-adenosylmethionine synthetase, C-terminal domain J4N39_01985 PF02772 S-adenosylmethionine synthetase, central domain J4N39_01985 PF00438 S-adenosylmethionine synthetase, N-terminal domain J4N39_01990 PF02779 Transketolase, pyrimidine binding domain J4N39_01990 PF02780 Transketolase, C-terminal domain J4N39_01990 PF00456 Transketolase, thiamine diphosphate binding domain J4N39_01995 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J4N39_01995 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J4N39_02000 PF00162 Phosphoglycerate kinase J4N39_02005 PF01116 Fructose-bisphosphate aldolase class-II J4N39_02010 PF05552 Conserved TM helix J4N39_02010 PF00924 Mechanosensitive ion channel J4N39_02020 PF01810 LysE type translocator J4N39_02025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_02025 PF03466 LysR substrate binding domain J4N39_02030 PF04402 Protein of unknown function (DUF541) J4N39_02035 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J4N39_02035 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N39_02035 PF01842 ACT domain J4N39_02040 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) J4N39_02045 PF01812 5-formyltetrahydrofolate cyclo-ligase family J4N39_02055 PF05164 Cell division protein ZapA J4N39_02060 PF03695 Uncharacterised protein family (UPF0149) J4N39_02065 PF01494 FAD binding domain J4N39_02070 PF01494 FAD binding domain J4N39_02085 PF01571 Aminomethyltransferase folate-binding domain J4N39_02090 PF03937 Flavinator of succinate dehydrogenase J4N39_02095 PF00890 FAD binding domain J4N39_02095 PF02910 Fumarate reductase flavoprotein C-term J4N39_02100 PF04542 Sigma-70 region 2 J4N39_02100 PF08281 Sigma-70, region 4 J4N39_02105 PF03872 Anti sigma-E protein RseA, N-terminal domain J4N39_02105 PF03873 Anti sigma-E protein RseA, C-terminal domain J4N39_02110 PF03888 MucB/RseB N-terminal domain J4N39_02110 PF17188 MucB/RseB C-terminal domain J4N39_02120 PF00679 Elongation factor G C-terminus J4N39_02120 PF00009 Elongation factor Tu GTP binding domain J4N39_02120 PF03144 Elongation factor Tu domain 2 J4N39_02120 PF06421 GTP-binding protein LepA C-terminus J4N39_02125 PF10502 Signal peptidase, peptidase S26 J4N39_02130 PF00035 Double-stranded RNA binding motif J4N39_02130 PF14622 Ribonuclease-III-like J4N39_02135 PF07650 KH domain J4N39_02135 PF01926 50S ribosome-binding GTPase J4N39_02140 PF02565 Recombination protein O C terminal J4N39_02140 PF11967 Recombination protein O N terminal J4N39_02145 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ J4N39_02150 PF01648 4'-phosphopantetheinyl transferase superfamily J4N39_02165 PF00990 Diguanylate cyclase, GGDEF domain J4N39_02165 PF00563 EAL domain J4N39_02165 PF03707 Bacterial signalling protein N terminal repeat J4N39_02170 PF00672 HAMP domain J4N39_02170 PF00512 His Kinase A (phospho-acceptor) domain J4N39_02170 PF01627 Hpt domain J4N39_02170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_02170 PF00072 Response regulator receiver domain J4N39_02170 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J4N39_02175 PF01938 TRAM domain J4N39_02175 PF05958 tRNA (Uracil-5-)-methyltransferase J4N39_02180 PF02824 TGS domain J4N39_02180 PF04607 Region found in RelA / SpoT proteins J4N39_02180 PF13291 ACT domain J4N39_02185 PF03819 MazG nucleotide pyrophosphohydrolase domain J4N39_02190 PF00117 Glutamine amidotransferase class-I J4N39_02190 PF06418 CTP synthase N-terminus J4N39_02195 PF03952 Enolase, N-terminal domain J4N39_02195 PF00113 Enolase, C-terminal TIM barrel domain J4N39_02205 PF04977 Septum formation initiator J4N39_02210 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase J4N39_02215 PF02542 YgbB family J4N39_02220 PF01142 tRNA pseudouridine synthase D (TruD) J4N39_02225 PF01975 Survival protein SurE J4N39_02235 PF01476 LysM domain J4N39_02235 PF01551 Peptidase family M23 J4N39_02240 PF00140 Sigma-70 factor, region 1.2 J4N39_02240 PF04545 Sigma-70, region 4 J4N39_02240 PF04539 Sigma-70 region 3 J4N39_02240 PF04542 Sigma-70 region 2 J4N39_02245 PF01624 MutS domain I J4N39_02245 PF05188 MutS domain II J4N39_02245 PF05192 MutS domain III J4N39_02245 PF05190 MutS family domain IV J4N39_02245 PF00488 MutS domain V J4N39_02260 PF05496 Holliday junction DNA helicase RuvB P-loop domain J4N39_02260 PF17864 RuvB AAA lid domain J4N39_02260 PF05491 RuvB C-terminal winged helix domain J4N39_02265 PF05816 Toxic anion resistance protein (TelA) J4N39_02270 PF02464 Competence-damaged protein J4N39_02275 PF00154 recA bacterial DNA recombination protein J4N39_02280 PF02631 RecX family J4N39_02285 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J4N39_02285 PF01411 tRNA synthetases class II (A) J4N39_02285 PF02272 DHHA1 domain J4N39_02290 PF01842 ACT domain J4N39_02290 PF00696 Amino acid kinase family J4N39_02290 PF13840 ACT domain J4N39_02295 PF02599 Global regulator protein family J4N39_02345 PF04277 Oxaloacetate decarboxylase, gamma chain J4N39_02350 PF00364 Biotin-requiring enzyme J4N39_02350 PF00682 HMGL-like J4N39_02350 PF02436 Conserved carboxylase domain J4N39_02355 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit J4N39_02360 PF08240 Alcohol dehydrogenase GroES-like domain J4N39_02360 PF00107 Zinc-binding dehydrogenase J4N39_02365 PF09335 SNARE associated Golgi protein J4N39_02370 PF00675 Insulinase (Peptidase family M16) J4N39_02370 PF05193 Peptidase M16 inactive domain J4N39_02375 PF04262 Glutamate-cysteine ligase J4N39_02385 PF02664 S-Ribosylhomocysteinase (LuxS) J4N39_02390 PF01595 Cyclin M transmembrane N-terminal domain J4N39_02390 PF00571 CBS domain J4N39_02390 PF03471 Transporter associated domain J4N39_02395 PF01578 Cytochrome C assembly protein J4N39_02400 PF02881 SRP54-type protein, helical bundle domain J4N39_02400 PF02978 Signal peptide binding domain J4N39_02400 PF00448 SRP54-type protein, GTPase domain J4N39_02405 PF00886 Ribosomal protein S16 J4N39_02410 PF05239 PRC-barrel domain J4N39_02410 PF01782 RimM N-terminal domain J4N39_02415 PF01746 tRNA (Guanine-1)-methyltransferase J4N39_02420 PF01245 Ribosomal protein L19 J4N39_02425 PF01113 Dihydrodipicolinate reductase, N-terminus J4N39_02425 PF05173 Dihydrodipicolinate reductase, C-terminus J4N39_02430 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain J4N39_02430 PF00117 Glutamine amidotransferase class-I J4N39_02435 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain J4N39_02435 PF02142 MGS-like domain J4N39_02435 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J4N39_02445 PF07715 TonB-dependent Receptor Plug Domain J4N39_02445 PF00593 TonB dependent receptor J4N39_02450 PF01925 Sulfite exporter TauE/SafE J4N39_02460 PF03458 UPF0126 domain J4N39_02465 PF01497 Periplasmic binding protein J4N39_02470 PF03186 CobD/Cbib protein J4N39_02475 PF01048 Phosphorylase superfamily J4N39_02485 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster J4N39_02485 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N39_02490 PF00310 Glutamine amidotransferases class-II J4N39_02490 PF04898 Glutamate synthase central domain J4N39_02490 PF01645 Conserved region in glutamate synthase J4N39_02490 PF01493 GXGXG motif J4N39_02495 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N39_02495 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster J4N39_02500 PF00310 Glutamine amidotransferases class-II J4N39_02500 PF04898 Glutamate synthase central domain J4N39_02500 PF01493 GXGXG motif J4N39_02500 PF01645 Conserved region in glutamate synthase J4N39_02510 PF16199 Radical_SAM C-terminal domain J4N39_02510 PF04055 Radical SAM superfamily J4N39_02515 PF00989 PAS fold J4N39_02515 PF00072 Response regulator receiver domain J4N39_02515 PF18415 Histidine kinase receptor ArcB trans-membrane domain J4N39_02515 PF00512 His Kinase A (phospho-acceptor) domain J4N39_02515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_02515 PF01627 Hpt domain J4N39_02525 PF00072 Response regulator receiver domain J4N39_02525 PF00486 Transcriptional regulatory protein, C terminal J4N39_02535 PF03737 Aldolase/RraA J4N39_02545 PF03447 Homoserine dehydrogenase, NAD binding domain J4N39_02545 PF00742 Homoserine dehydrogenase J4N39_02545 PF13840 ACT domain J4N39_02545 PF01842 ACT domain J4N39_02545 PF00696 Amino acid kinase family J4N39_02550 PF00288 GHMP kinases N terminal domain J4N39_02550 PF08544 GHMP kinases C terminal J4N39_02555 PF14821 Threonine synthase N terminus J4N39_02555 PF00291 Pyridoxal-phosphate dependent enzyme J4N39_02560 PF01228 Glycine radical J4N39_02565 PF01261 Xylose isomerase-like TIM barrel J4N39_02570 PF03167 Uracil DNA glycosylase superfamily J4N39_02585 PF01235 Sodium:alanine symporter family J4N39_02590 PF03883 Peroxide stress protein YaaA J4N39_02595 PF00271 Helicase conserved C-terminal domain J4N39_02595 PF00270 DEAD/DEAH box helicase J4N39_02600 PF05175 Methyltransferase small domain J4N39_02605 PF05525 Branched-chain amino acid transport protein J4N39_02610 PF00258 Flavodoxin J4N39_02615 PF02899 Phage integrase, N-terminal SAM-like domain J4N39_02615 PF00589 Phage integrase family J4N39_02620 PF10411 Disulfide bond isomerase protein N-terminus J4N39_02620 PF13098 Thioredoxin-like domain J4N39_02625 PF01368 DHH family J4N39_02625 PF17768 RecJ OB domain J4N39_02625 PF02272 DHHA1 domain J4N39_02635 PF01336 OB-fold nucleic acid binding domain J4N39_02635 PF00152 tRNA synthetases class II (D, K and N) J4N39_02640 PF02690 Na+/Pi-cotransporter J4N39_02645 PF03466 LysR substrate binding domain J4N39_02645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_02650 PF01022 Bacterial regulatory protein, arsR family J4N39_02655 PF00005 ABC transporter J4N39_02655 PF12848 ABC transporter J4N39_02660 PF01464 Transglycosylase SLT domain J4N39_02660 PF14718 Soluble lytic murein transglycosylase L domain J4N39_02665 PF01371 Trp repressor protein J4N39_02670 PF01931 Protein of unknown function DUF84 J4N39_02675 PF00800 Prephenate dehydratase J4N39_02675 PF01817 Chorismate mutase type II J4N39_02680 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein J4N39_02685 PF13525 Outer membrane lipoprotein J4N39_02690 PF01479 S4 domain J4N39_02690 PF00849 RNA pseudouridylate synthase J4N39_02695 PF02578 Multi-copper polyphenol oxidoreductase laccase J4N39_02700 PF00004 ATPase family associated with various cellular activities (AAA) J4N39_02700 PF07724 AAA domain (Cdc48 subfamily) J4N39_02700 PF17871 AAA lid domain J4N39_02700 PF02861 Clp amino terminal domain, pathogenicity island component J4N39_02700 PF10431 C-terminal, D2-small domain, of ClpB protein J4N39_02745 PF03411 Penicillin-insensitive murein endopeptidase J4N39_02755 PF00037 4Fe-4S binding domain J4N39_02760 PF16325 Peptidase family U32 C-terminal domain J4N39_02760 PF01136 Peptidase family U32 J4N39_02765 PF04381 Putative exonuclease, RdgC J4N39_02770 PF00072 Response regulator receiver domain J4N39_02770 PF00486 Transcriptional regulatory protein, C terminal J4N39_02775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_02775 PF00512 His Kinase A (phospho-acceptor) domain J4N39_02775 PF00989 PAS fold J4N39_02775 PF11808 Phosphate regulon sensor protein PhoR J4N39_02780 PF12849 PBP superfamily domain J4N39_02785 PF02541 Ppx/GppA phosphatase family J4N39_02790 PF02503 Polyphosphate kinase middle domain J4N39_02790 PF13090 Polyphosphate kinase C-terminal domain 2 J4N39_02790 PF17941 Polyphosphate kinase C-terminal domain 1 J4N39_02790 PF13089 Polyphosphate kinase N-terminal domain J4N39_02795 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_02800 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_02805 PF00005 ABC transporter J4N39_02810 PF01895 PhoU domain J4N39_02815 PF03976 Polyphosphate kinase 2 (PPK2) J4N39_02820 PF03932 CutC family J4N39_02825 PF00578 AhpC/TSA family J4N39_02825 PF10417 C-terminal domain of 1-Cys peroxiredoxin J4N39_02830 PF03466 LysR substrate binding domain J4N39_02830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_02835 PF00571 CBS domain J4N39_02840 PF02547 Queuosine biosynthesis protein J4N39_02845 PF01702 Queuine tRNA-ribosyltransferase J4N39_02850 PF02699 Preprotein translocase subunit J4N39_02855 PF07549 SecD/SecF GG Motif J4N39_02855 PF13721 SecD export protein N-terminal TM region J4N39_02855 PF02355 Protein export membrane protein J4N39_02860 PF02355 Protein export membrane protein J4N39_02860 PF07549 SecD/SecF GG Motif J4N39_02880 PF00459 Inositol monophosphatase family J4N39_02885 PF00588 SpoU rRNA Methylase family J4N39_02890 PF02082 Transcriptional regulator J4N39_02895 PF00266 Aminotransferase class-V J4N39_02900 PF01592 NifU-like N terminal domain J4N39_02905 PF01521 Iron-sulphur cluster biosynthesis J4N39_02910 PF00226 DnaJ domain J4N39_02910 PF07743 HSCB C-terminal oligomerisation domain J4N39_02915 PF00012 Hsp70 protein J4N39_02920 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N39_02925 PF04384 Iron-sulphur cluster assembly J4N39_02930 PF00883 Cytosol aminopeptidase family, catalytic domain J4N39_02930 PF12404 Peptidase J4N39_02935 PF00334 Nucleoside diphosphate kinase J4N39_02940 PF04055 Radical SAM superfamily J4N39_02950 PF13464 Domain of unknown function (DUF4115) J4N39_02955 PF04551 GcpE protein J4N39_02960 PF03129 Anticodon binding domain J4N39_02960 PF13393 Histidyl-tRNA synthetase J4N39_02965 PF09976 Tetratricopeptide repeat-like domain J4N39_02970 PF13360 PQQ-like domain J4N39_02975 PF01926 50S ribosome-binding GTPase J4N39_02975 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal J4N39_02980 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J4N39_02980 PF01411 tRNA synthetases class II (A) J4N39_02980 PF02272 DHHA1 domain J4N39_02990 PF13742 OB-fold nucleic acid binding domain J4N39_02990 PF02601 Exonuclease VII, large subunit J4N39_02995 PF00571 CBS domain J4N39_02995 PF00478 IMP dehydrogenase / GMP reductase domain J4N39_03000 PF00958 GMP synthase C terminal domain J4N39_03000 PF00117 Glutamine amidotransferase class-I J4N39_03000 PF02540 NAD synthase J4N39_03005 PF06483 Chitinase C J4N39_03005 PF00704 Glycosyl hydrolases family 18 J4N39_03020 PF01184 GPR1/FUN34/yaaH family J4N39_03025 PF01235 Sodium:alanine symporter family J4N39_03030 PF07885 Ion channel J4N39_03045 PF00271 Helicase conserved C-terminal domain J4N39_03045 PF00270 DEAD/DEAH box helicase J4N39_03085 PF01381 Helix-turn-helix J4N39_03095 PF01668 SmpB protein J4N39_03100 PF03364 Polyketide cyclase / dehydrase and lipid transport J4N39_03105 PF03658 RnfH family Ubiquitin J4N39_03110 PF04355 SmpA / OmlA family J4N39_03115 PF02463 RecF/RecN/SMC N terminal domain J4N39_03120 PF01513 ATP-NAD kinase J4N39_03125 PF01025 GrpE J4N39_03130 PF00012 Hsp70 protein J4N39_03135 PF00226 DnaJ domain J4N39_03135 PF01556 DnaJ C terminal domain J4N39_03135 PF00684 DnaJ central domain J4N39_03145 PF00356 Bacterial regulatory proteins, lacI family J4N39_03155 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_03160 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_03165 PF17912 MalK OB fold domain J4N39_03165 PF03459 TOBE domain J4N39_03165 PF00005 ABC transporter J4N39_03170 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain J4N39_03170 PF06165 Glycosyltransferase family 36 J4N39_03175 PF01263 Aldose 1-epimerase J4N39_03185 PF00356 Bacterial regulatory proteins, lacI family J4N39_03190 PF17200 Single Cache domain 2 J4N39_03190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_03190 PF00672 HAMP domain J4N39_03220 PF03806 AbgT putative transporter family J4N39_03230 PF14437 MafB19-like deaminase J4N39_03235 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N39_03235 PF01464 Transglycosylase SLT domain J4N39_03240 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal J4N39_03240 PF02769 AIR synthase related protein, C-terminal domain J4N39_03240 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain J4N39_03270 PF07687 Peptidase dimerisation domain J4N39_03270 PF01546 Peptidase family M20/M25/M40 J4N39_03275 PF00860 Permease family J4N39_03280 PF00156 Phosphoribosyl transferase domain J4N39_03285 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) J4N39_03290 PF07417 Sigma factor-binding transcriptional regulator Crl J4N39_03295 PF01472 PUA domain J4N39_03295 PF00696 Amino acid kinase family J4N39_03300 PF00171 Aldehyde dehydrogenase family J4N39_03305 PF03477 ATP cone domain J4N39_03310 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J4N39_03310 PF01872 RibD C-terminal domain J4N39_03315 PF00677 Lumazine binding domain J4N39_03320 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase J4N39_03320 PF00925 GTP cyclohydrolase II J4N39_03325 PF00892 EamA-like transporter family J4N39_03330 PF00885 6,7-dimethyl-8-ribityllumazine synthase J4N39_03335 PF01029 NusB family J4N39_03340 PF02769 AIR synthase related protein, C-terminal domain J4N39_03340 PF00586 AIR synthase related protein, N-terminal domain J4N39_03345 PF04608 Phosphatidylglycerophosphatase A J4N39_03355 PF12833 Helix-turn-helix domain J4N39_03360 PF02779 Transketolase, pyrimidine binding domain J4N39_03360 PF02780 Transketolase, C-terminal domain J4N39_03360 PF13292 1-deoxy-D-xylulose-5-phosphate synthase J4N39_03365 PF00348 Polyprenyl synthetase J4N39_03370 PF02609 Exonuclease VII small subunit J4N39_03375 PF01618 MotA/TolQ/ExbB proton channel family J4N39_03380 PF00691 OmpA family J4N39_03385 PF02568 Thiamine biosynthesis protein (ThiI) J4N39_03385 PF02926 THUMP domain J4N39_03390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_03390 PF03466 LysR substrate binding domain J4N39_03400 PF04241 Protein of unknown function (DUF423) J4N39_03405 PF01728 FtsJ-like methyltransferase J4N39_03405 PF18125 RlmM ferredoxin-like domain J4N39_03410 PF01367 5'-3' exonuclease, C-terminal SAM fold J4N39_03410 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J4N39_03415 PF11892 Domain of unknown function (DUF3412) J4N39_03415 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases J4N39_03415 PF03641 Possible lysine decarboxylase J4N39_03420 PF00990 Diguanylate cyclase, GGDEF domain J4N39_03430 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term J4N39_03430 PF14489 QueF-like protein J4N39_03435 PF07348 Syd protein (SUKH-2) J4N39_03440 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) J4N39_03470 PF00849 RNA pseudouridylate synthase J4N39_03475 PF11944 Protein of unknown function (DUF3461) J4N39_03480 PF01842 ACT domain J4N39_03480 PF01909 Nucleotidyltransferase domain J4N39_03480 PF01966 HD domain J4N39_03480 PF08335 GlnD PII-uridylyltransferase J4N39_03485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_03485 PF03466 LysR substrate binding domain J4N39_03490 PF07969 Amidohydrolase family J4N39_03495 PF01545 Cation efflux family J4N39_03495 PF16916 Dimerisation domain of Zinc Transporter J4N39_03500 PF01145 SPFH domain / Band 7 family J4N39_03505 PF01145 SPFH domain / Band 7 family J4N39_03505 PF12221 Bacterial membrane protein N terminal J4N39_03515 PF01638 HxlR-like helix-turn-helix J4N39_03525 PF00557 Metallopeptidase family M24 J4N39_03530 PF00318 Ribosomal protein S2 J4N39_03535 PF00889 Elongation factor TS J4N39_03540 PF00696 Amino acid kinase family J4N39_03545 PF01765 Ribosome recycling factor J4N39_03550 PF01255 Putative undecaprenyl diphosphate synthase J4N39_03560 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain J4N39_03560 PF13288 DXP reductoisomerase C-terminal domain J4N39_03560 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase J4N39_03565 PF02163 Peptidase family M50 J4N39_03565 PF17820 PDZ domain J4N39_03570 PF01103 Surface antigen J4N39_03570 PF07244 Surface antigen variable number repeat J4N39_03575 PF03938 Outer membrane protein (OmpH-like) J4N39_03580 PF00132 Bacterial transferase hexapeptide (six repeats) J4N39_03580 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD J4N39_03585 PF07977 FabA-like domain J4N39_03590 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 J4N39_03590 PF00132 Bacterial transferase hexapeptide (six repeats) J4N39_03595 PF02684 Lipid-A-disaccharide synthetase J4N39_03600 PF01351 Ribonuclease HII J4N39_03605 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J4N39_03605 PF14579 Helix-hairpin-helix motif J4N39_03605 PF02811 PHP domain J4N39_03605 PF01336 OB-fold nucleic acid binding domain J4N39_03605 PF07733 Bacterial DNA polymerase III alpha NTPase domain J4N39_03610 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit J4N39_03615 PF11734 TilS substrate C-terminal domain J4N39_03615 PF01171 PP-loop family J4N39_03615 PF09179 TilS substrate binding domain J4N39_03620 PF00034 Cytochrome c J4N39_03630 PF00543 Nitrogen regulatory protein P-II J4N39_03635 PF03372 Endonuclease/Exonuclease/phosphatase family J4N39_03640 PF01476 LysM domain J4N39_03640 PF01464 Transglycosylase SLT domain J4N39_03645 PF16123 Hydroxyacylglutathione hydrolase C-terminus J4N39_03645 PF00753 Metallo-beta-lactamase superfamily J4N39_03650 PF08241 Methyltransferase domain J4N39_03660 PF00075 RNase H J4N39_03665 PF00929 Exonuclease J4N39_03680 PF09317 Domain of unknown function (DUF1974) J4N39_03680 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J4N39_03680 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J4N39_03680 PF02770 Acyl-CoA dehydrogenase, middle domain J4N39_03685 PF13580 SIS domain J4N39_03690 PF13230 Glutamine amidotransferases class-II J4N39_03695 PF00551 Formyl transferase J4N39_03700 PF02769 AIR synthase related protein, C-terminal domain J4N39_03700 PF00586 AIR synthase related protein, N-terminal domain J4N39_03710 PF00860 Permease family J4N39_03725 PF03358 NADPH-dependent FMN reductase J4N39_03730 PF03960 ArsC family J4N39_03735 PF01435 Peptidase family M48 J4N39_03735 PF13181 Tetratricopeptide repeat J4N39_03745 PF01594 AI-2E family transporter J4N39_03750 PF00578 AhpC/TSA family J4N39_03755 PF01842 ACT domain J4N39_03760 PF00701 Dihydrodipicolinate synthetase family J4N39_03765 PF06804 NlpB/DapX lipoprotein J4N39_03775 PF02557 D-alanyl-D-alanine carboxypeptidase J4N39_03780 PF07687 Peptidase dimerisation domain J4N39_03780 PF01546 Peptidase family M20/M25/M40 J4N39_03785 PF03960 ArsC family J4N39_03805 PF11143 Protein of unknown function (DUF2919) J4N39_03810 PF04261 Dyp-type peroxidase family J4N39_03815 PF00669 Bacterial flagellin N-terminal helical region J4N39_03815 PF07196 Flagellin hook IN motif J4N39_03815 PF00700 Bacterial flagellin C-terminal helical region J4N39_03820 PF00700 Bacterial flagellin C-terminal helical region J4N39_03820 PF07196 Flagellin hook IN motif J4N39_03820 PF00669 Bacterial flagellin N-terminal helical region J4N39_03825 PF00700 Bacterial flagellin C-terminal helical region J4N39_03825 PF07196 Flagellin hook IN motif J4N39_03825 PF00669 Bacterial flagellin N-terminal helical region J4N39_03830 PF00700 Bacterial flagellin C-terminal helical region J4N39_03830 PF07196 Flagellin hook IN motif J4N39_03830 PF00669 Bacterial flagellin N-terminal helical region J4N39_03835 PF07196 Flagellin hook IN motif J4N39_03835 PF00700 Bacterial flagellin C-terminal helical region J4N39_03835 PF00669 Bacterial flagellin N-terminal helical region J4N39_03840 PF00669 Bacterial flagellin N-terminal helical region J4N39_03840 PF07196 Flagellin hook IN motif J4N39_03840 PF00700 Bacterial flagellin C-terminal helical region J4N39_03845 PF00669 Bacterial flagellin N-terminal helical region J4N39_03845 PF00700 Bacterial flagellin C-terminal helical region J4N39_03845 PF07196 Flagellin hook IN motif J4N39_03850 PF00700 Bacterial flagellin C-terminal helical region J4N39_03850 PF07196 Flagellin hook IN motif J4N39_03850 PF00669 Bacterial flagellin N-terminal helical region J4N39_03855 PF03646 FlaG protein J4N39_03860 PF07196 Flagellin hook IN motif J4N39_03860 PF07195 Flagellar hook-associated protein 2 C-terminus J4N39_03860 PF02465 Flagellar hook-associated protein 2 N-terminus J4N39_03870 PF02561 Flagellar protein FliS J4N39_03875 PF00158 Sigma-54 interaction domain J4N39_03875 PF06490 Flagellar regulatory protein FleQ J4N39_03875 PF02954 Bacterial regulatory protein, Fis family J4N39_03880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_03880 PF00512 His Kinase A (phospho-acceptor) domain J4N39_03880 PF13188 PAS domain J4N39_03885 PF02954 Bacterial regulatory protein, Fis family J4N39_03885 PF00072 Response regulator receiver domain J4N39_03885 PF00158 Sigma-54 interaction domain J4N39_03890 PF02049 Flagellar hook-basal body complex protein FliE J4N39_03895 PF01514 Secretory protein of YscJ/FliF family J4N39_03895 PF08345 Flagellar M-ring protein C-terminal J4N39_03900 PF14842 FliG N-terminal domain J4N39_03900 PF14841 FliG middle domain J4N39_03900 PF01706 FliG C-terminal domain J4N39_03910 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N39_03910 PF18269 T3SS EscN ATPase C-terminal domain J4N39_03930 PF02154 Flagellar motor switch protein FliM J4N39_03930 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J4N39_03935 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J4N39_03940 PF04347 Flagellar biosynthesis protein, FliO J4N39_03945 PF00813 FliP family J4N39_03950 PF01313 Bacterial export proteins, family 3 J4N39_03955 PF01311 Bacterial export proteins, family 1 J4N39_03960 PF01312 FlhB HrpN YscU SpaS Family J4N39_03965 PF00771 FHIPEP family J4N39_03970 PF00448 SRP54-type protein, GTPase domain J4N39_03975 PF10609 NUBPL iron-transfer P-loop NTPase J4N39_03980 PF04542 Sigma-70 region 2 J4N39_03980 PF04539 Sigma-70 region 3 J4N39_03980 PF04545 Sigma-70, region 4 J4N39_03985 PF00072 Response regulator receiver domain J4N39_03990 PF04344 Chemotaxis phosphatase, CheZ J4N39_03995 PF01584 CheW-like domain J4N39_03995 PF02895 Signal transducing histidine kinase, homodimeric domain J4N39_03995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_03995 PF01627 Hpt domain J4N39_03995 PF00072 Response regulator receiver domain J4N39_04000 PF01339 CheB methylesterase J4N39_04000 PF00072 Response regulator receiver domain J4N39_04005 PF13614 AAA domain J4N39_04015 PF01584 CheW-like domain J4N39_04025 PF00005 ABC transporter J4N39_04030 PF03379 CcmB protein J4N39_04035 PF01578 Cytochrome C assembly protein J4N39_04045 PF03100 CcmE J4N39_04050 PF01578 Cytochrome C assembly protein J4N39_04050 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal J4N39_04055 PF08534 Redoxin J4N39_04060 PF03918 Cytochrome C biogenesis protein J4N39_04065 PF03918 Cytochrome C biogenesis protein J4N39_04070 PF04333 MlaA lipoprotein J4N39_04080 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J4N39_04090 PF04542 Sigma-70 region 2 J4N39_04090 PF08281 Sigma-70, region 4 J4N39_04095 PF02803 Thiolase, C-terminal domain J4N39_04095 PF00108 Thiolase, N-terminal domain J4N39_04100 PF00378 Enoyl-CoA hydratase/isomerase J4N39_04100 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J4N39_04100 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J4N39_04105 PF05193 Peptidase M16 inactive domain J4N39_04105 PF00675 Insulinase (Peptidase family M16) J4N39_04110 PF00300 Histidine phosphatase superfamily (branch 1) J4N39_04115 PF01713 Smr domain J4N39_04120 PF05175 Methyltransferase small domain J4N39_04125 PF01264 Chorismate synthase J4N39_04135 PF04315 Elongation factor P hydroxylase J4N39_04140 PF08891 YfcL protein J4N39_04145 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB J4N39_04150 PF01381 Helix-turn-helix J4N39_04155 PF01266 FAD dependent oxidoreductase J4N39_04155 PF05430 S-adenosyl-L-methionine-dependent methyltransferase J4N39_04160 PF00109 Beta-ketoacyl synthase, N-terminal domain J4N39_04160 PF02801 Beta-ketoacyl synthase, C-terminal domain J4N39_04165 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J4N39_04165 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N39_04165 PF11890 Domain of unknown function (DUF3410) J4N39_04170 PF01118 Semialdehyde dehydrogenase, NAD binding domain J4N39_04170 PF02774 Semialdehyde dehydrogenase, dimerisation domain J4N39_04180 PF01416 tRNA pseudouridine synthase J4N39_04185 PF01039 Carboxyl transferase domain J4N39_04185 PF17848 Acetyl-coA carboxylase zinc finger domain J4N39_04190 PF02875 Mur ligase family, glutamate ligase domain J4N39_04190 PF08245 Mur ligase middle domain J4N39_04195 PF05036 Sporulation related domain J4N39_04200 PF02674 Colicin V production protein J4N39_04205 PF00156 Phosphoribosyl transferase domain J4N39_04210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_04210 PF03466 LysR substrate binding domain J4N39_04215 PF00072 Response regulator receiver domain J4N39_04220 PF04304 Protein of unknown function (DUF454) J4N39_04225 PF00156 Phosphoribosyl transferase domain J4N39_04230 PF12170 DNA polymerase III tau subunit V interacting with alpha J4N39_04230 PF12169 DNA polymerase III subunits gamma and tau domain III J4N39_04230 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding J4N39_04235 PF02575 YbaB/EbfC DNA-binding family J4N39_04240 PF02132 RecR protein J4N39_04240 PF13662 Toprim domain J4N39_04245 PF03692 Putative zinc- or iron-chelating domain J4N39_04250 PF03692 Putative zinc- or iron-chelating domain J4N39_04275 PF01032 FecCD transport family J4N39_04280 PF01497 Periplasmic binding protein J4N39_04285 PF00005 ABC transporter J4N39_04295 PF07715 TonB-dependent Receptor Plug Domain J4N39_04295 PF00593 TonB dependent receptor J4N39_04300 PF06445 GyrI-like small molecule binding domain J4N39_04300 PF12833 Helix-turn-helix domain J4N39_04305 PF13847 Methyltransferase domain J4N39_04310 PF01263 Aldose 1-epimerase J4N39_04315 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J4N39_04315 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J4N39_04320 PF01641 SelR domain J4N39_04330 PF07023 Protein of unknown function (DUF1315) J4N39_04335 PF00710 Asparaginase, N-terminal J4N39_04335 PF17763 Glutaminase/Asparaginase C-terminal domain J4N39_04340 PF01343 Peptidase family S49 J4N39_04345 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J4N39_04345 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N39_04350 PF00881 Nitroreductase family J4N39_04355 PF01131 DNA topoisomerase J4N39_04355 PF01751 Toprim domain J4N39_04365 PF12729 Four helix bundle sensory module for signal transduction J4N39_04365 PF00672 HAMP domain J4N39_04365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_04370 PF00106 short chain dehydrogenase J4N39_04375 PF00563 EAL domain J4N39_04375 PF00990 Diguanylate cyclase, GGDEF domain J4N39_04375 PF08447 PAS fold J4N39_04375 PF08448 PAS fold J4N39_04380 PF00850 Histone deacetylase domain J4N39_04385 PF17200 Single Cache domain 2 J4N39_04385 PF00672 HAMP domain J4N39_04385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_04390 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J4N39_04420 PF11893 Domain of unknown function (DUF3413) J4N39_04420 PF00884 Sulfatase J4N39_04425 PF07208 Protein of unknown function (DUF1414) J4N39_04430 PF04245 37-kD nucleoid-associated bacterial protein J4N39_04445 PF01118 Semialdehyde dehydrogenase, NAD binding domain J4N39_04445 PF02774 Semialdehyde dehydrogenase, dimerisation domain J4N39_04450 PF00027 Cyclic nucleotide-binding domain J4N39_04450 PF00520 Ion transport protein J4N39_04455 PF01914 MarC family integral membrane protein J4N39_04460 PF00465 Iron-containing alcohol dehydrogenase J4N39_04460 PF00171 Aldehyde dehydrogenase family J4N39_04470 PF11412 Disulphide bond corrector protein DsbC J4N39_04470 PF02683 Cytochrome C biogenesis protein transmembrane region J4N39_04475 PF00085 Thioredoxin J4N39_04495 PF02777 Iron/manganese superoxide dismutases, C-terminal domain J4N39_04495 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain J4N39_04500 PF00462 Glutaredoxin J4N39_04505 PF03009 Glycerophosphoryl diester phosphodiesterase family J4N39_04510 PF08220 DeoR-like helix-turn-helix domain J4N39_04510 PF00455 DeoR C terminal sensor domain J4N39_04515 PF00005 ABC transporter J4N39_04515 PF17912 MalK OB fold domain J4N39_04520 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_04525 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_04530 PF13416 Bacterial extracellular solute-binding protein J4N39_04535 PF03553 Na+/H+ antiporter family J4N39_04535 PF13726 Na+-H+ antiporter family J4N39_04540 PF00929 Exonuclease J4N39_04545 PF00691 OmpA family J4N39_04545 PF18393 MotY N-terminal domain J4N39_04550 PF10952 Protein of unknown function (DUF2753) J4N39_04555 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N39_04560 PF10576 Iron-sulfur binding domain of endonuclease III J4N39_04560 PF00730 HhH-GPD superfamily base excision DNA repair protein J4N39_04560 PF00633 Helix-hairpin-helix motif J4N39_04565 PF02508 Rnf-Nqr subunit, membrane protein J4N39_04570 PF04205 FMN-binding domain J4N39_04575 PF03116 NQR2, RnfD, RnfE family J4N39_04580 PF12838 4Fe-4S dicluster domain J4N39_04580 PF10531 SLBB domain J4N39_04580 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit J4N39_04580 PF13375 RnfC Barrel sandwich hybrid domain J4N39_04585 PF04060 Putative Fe-S cluster J4N39_04590 PF02508 Rnf-Nqr subunit, membrane protein J4N39_04595 PF02929 Beta galactosidase small chain J4N39_04595 PF16353 Domain of unknown function(DUF4981) J4N39_04595 PF00703 Glycosyl hydrolases family 2 J4N39_04595 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J4N39_04595 PF02837 Glycosyl hydrolases family 2, sugar binding domain J4N39_04600 PF16874 Glycosyl hydrolase family 36 C-terminal domain J4N39_04600 PF16875 Glycosyl hydrolase family 36 N-terminal domain J4N39_04610 PF00202 Aminotransferase class-III J4N39_04630 PF17757 UvrB interaction domain J4N39_04630 PF00271 Helicase conserved C-terminal domain J4N39_04630 PF04851 Type III restriction enzyme, res subunit J4N39_04630 PF02151 UvrB/uvrC motif J4N39_04630 PF12344 Ultra-violet resistance protein B J4N39_04635 PF00158 Sigma-54 interaction domain J4N39_04635 PF00072 Response regulator receiver domain J4N39_04635 PF02954 Bacterial regulatory protein, Fis family J4N39_04640 PF01627 Hpt domain J4N39_04645 PF01933 Uncharacterised protein family UPF0052 J4N39_04650 PF04055 Radical SAM superfamily J4N39_04650 PF06463 Molybdenum Cofactor Synthesis C J4N39_04655 PF00994 Probable molybdopterin binding domain J4N39_04660 PF01967 MoaC family J4N39_04665 PF02597 ThiS family J4N39_04670 PF02391 MoaE protein J4N39_04675 PF00704 Glycosyl hydrolases family 18 J4N39_04675 PF08329 Chitinase A, N-terminal domain J4N39_04680 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N39_04685 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_04690 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N39_04690 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_04695 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N39_04695 PF00005 ABC transporter J4N39_04700 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N39_04700 PF00005 ABC transporter J4N39_04705 PF01554 MatE J4N39_04710 PF13409 Glutathione S-transferase, N-terminal domain J4N39_04715 PF01609 Transposase DDE domain J4N39_04715 PF13808 DDE_Tnp_1-associated J4N39_04720 PF01810 LysE type translocator J4N39_04760 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N39_04765 PF00873 AcrB/AcrD/AcrF family J4N39_04780 PF03313 Serine dehydratase alpha chain J4N39_04785 PF01037 Lrp/AsnC ligand binding domain J4N39_04785 PF13404 AsnC-type helix-turn-helix domain J4N39_04795 PF09619 Type III secretion system lipoprotein chaperone (YscW) J4N39_04800 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J4N39_04820 PF01810 LysE type translocator J4N39_04830 PF08329 Chitinase A, N-terminal domain J4N39_04830 PF00704 Glycosyl hydrolases family 18 J4N39_04845 PF03793 PASTA domain J4N39_04845 PF00069 Protein kinase domain J4N39_04850 PF01156 Inosine-uridine preferring nucleoside hydrolase J4N39_04870 PF00356 Bacterial regulatory proteins, lacI family J4N39_04875 PF11896 Domain of unknown function (DUF3416) J4N39_04875 PF00128 Alpha amylase, catalytic domain J4N39_04880 PF01547 Bacterial extracellular solute-binding protein J4N39_04885 PF00248 Aldo/keto reductase family J4N39_04895 PF00356 Bacterial regulatory proteins, lacI family J4N39_04915 PF07690 Major Facilitator Superfamily J4N39_04920 PF00474 Sodium:solute symporter family J4N39_04925 PF03315 Serine dehydratase beta chain J4N39_04925 PF03313 Serine dehydratase alpha chain J4N39_04940 PF00990 Diguanylate cyclase, GGDEF domain J4N39_04950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_04950 PF03466 LysR substrate binding domain J4N39_04955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_04955 PF00672 HAMP domain J4N39_04960 PF00005 ABC transporter J4N39_04960 PF00571 CBS domain J4N39_04965 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_04975 PF03150 Di-haem cytochrome c peroxidase J4N39_04975 PF00034 Cytochrome c J4N39_04980 PF00072 Response regulator receiver domain J4N39_04980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_04980 PF00512 His Kinase A (phospho-acceptor) domain J4N39_04980 PF09308 LuxQ, periplasmic J4N39_04990 PF00990 Diguanylate cyclase, GGDEF domain J4N39_04995 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_05000 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N39_05005 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_05010 PF00005 ABC transporter J4N39_05020 PF02811 PHP domain J4N39_05020 PF01336 OB-fold nucleic acid binding domain J4N39_05020 PF07733 Bacterial DNA polymerase III alpha NTPase domain J4N39_05020 PF14579 Helix-hairpin-helix motif J4N39_05020 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J4N39_05030 PF18073 Rubredoxin metal binding domain J4N39_05035 PF02743 Cache domain J4N39_05035 PF00672 HAMP domain J4N39_05035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_05040 PF00072 Response regulator receiver domain J4N39_05040 PF01584 CheW-like domain J4N39_05045 PF03707 Bacterial signalling protein N terminal repeat J4N39_05045 PF00990 Diguanylate cyclase, GGDEF domain J4N39_05045 PF00563 EAL domain J4N39_05055 PF01554 MatE J4N39_05060 PF00939 Sodium:sulfate symporter transmembrane region J4N39_05065 PF00158 Sigma-54 interaction domain J4N39_05065 PF00072 Response regulator receiver domain J4N39_05065 PF02954 Bacterial regulatory protein, Fis family J4N39_05070 PF00403 Heavy-metal-associated domain J4N39_05075 PF01048 Phosphorylase superfamily J4N39_05080 PF00267 Gram-negative porin J4N39_05090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_05090 PF00672 HAMP domain J4N39_05095 PF01230 HIT domain J4N39_05120 PF05728 Uncharacterised protein family (UPF0227) J4N39_05125 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N39_05130 PF13302 Acetyltransferase (GNAT) domain J4N39_05140 PF00271 Helicase conserved C-terminal domain J4N39_05140 PF03461 TRCF domain J4N39_05140 PF17757 UvrB interaction domain J4N39_05140 PF02559 CarD-like/TRCF domain J4N39_05140 PF00270 DEAD/DEAH box helicase J4N39_05150 PF12704 MacB-like periplasmic core domain J4N39_05150 PF02687 FtsX-like permease family J4N39_05155 PF00005 ABC transporter J4N39_05160 PF12704 MacB-like periplasmic core domain J4N39_05160 PF02687 FtsX-like permease family J4N39_05170 PF00753 Metallo-beta-lactamase superfamily J4N39_05170 PF13567 Domain of unknown function (DUF4131) J4N39_05170 PF03772 Competence protein J4N39_05175 PF00664 ABC transporter transmembrane region J4N39_05175 PF00005 ABC transporter J4N39_05180 PF02606 Tetraacyldisaccharide-1-P 4'-kinase J4N39_05185 PF03966 Trm112p-like protein J4N39_05190 PF02348 Cytidylyltransferase J4N39_05210 PF00936 BMC domain J4N39_05230 PF00465 Iron-containing alcohol dehydrogenase J4N39_05230 PF00171 Aldehyde dehydrogenase family J4N39_05235 PF00202 Aminotransferase class-III J4N39_05250 PF00535 Glycosyl transferase family 2 J4N39_05255 PF04293 SpoVR like protein J4N39_05260 PF04285 Protein of unknown function (DUF444) J4N39_05265 PF08298 PrkA AAA domain J4N39_05265 PF06798 PrkA serine protein kinase C-terminal domain J4N39_05275 PF03887 YfbU domain J4N39_05285 PF04055 Radical SAM superfamily J4N39_05290 PF00672 HAMP domain J4N39_05290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_05295 PF01228 Glycine radical J4N39_05295 PF02901 Pyruvate formate lyase-like J4N39_05310 PF00005 ABC transporter J4N39_05315 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N39_05320 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_05325 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_05330 PF03372 Endonuclease/Exonuclease/phosphatase family J4N39_05340 PF00893 Small Multidrug Resistance protein J4N39_05345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_05345 PF03466 LysR substrate binding domain J4N39_05350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_05350 PF00672 HAMP domain J4N39_05360 PF08328 Adenylosuccinate lyase C-terminal J4N39_05360 PF00206 Lyase J4N39_05365 PF04356 Protein of unknown function (DUF489) J4N39_05375 PF00849 RNA pseudouridylate synthase J4N39_05380 PF03971 Monomeric isocitrate dehydrogenase J4N39_05385 PF00313 'Cold-shock' DNA-binding domain J4N39_05390 PF02617 ATP-dependent Clp protease adaptor protein ClpS J4N39_05395 PF10431 C-terminal, D2-small domain, of ClpB protein J4N39_05395 PF17871 AAA lid domain J4N39_05395 PF07724 AAA domain (Cdc48 subfamily) J4N39_05395 PF02861 Clp amino terminal domain, pathogenicity island component J4N39_05395 PF00004 ATPase family associated with various cellular activities (AAA) J4N39_05400 PF01176 Translation initiation factor 1A / IF-1 J4N39_05405 PF04377 Arginine-tRNA-protein transferase, C terminus J4N39_05405 PF04376 Arginine-tRNA-protein transferase, N terminus J4N39_05410 PF03588 Leucyl/phenylalanyl-tRNA protein transferase J4N39_05420 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J4N39_05425 PF10692 Protein of unknown function (DUF2498) J4N39_05430 PF01131 DNA topoisomerase J4N39_05430 PF01396 Topoisomerase DNA binding C4 zinc finger J4N39_05430 PF08272 Topoisomerase I zinc-ribbon-like J4N39_05430 PF01751 Toprim domain J4N39_05435 PF00990 Diguanylate cyclase, GGDEF domain J4N39_05435 PF03707 Bacterial signalling protein N terminal repeat J4N39_05435 PF00563 EAL domain J4N39_05440 PF00483 Nucleotidyl transferase J4N39_05445 PF00534 Glycosyl transferases group 1 J4N39_05445 PF08323 Starch synthase catalytic domain J4N39_05465 PF04994 TfoX C-terminal domain J4N39_05465 PF04993 TfoX N-terminal domain J4N39_05470 PF00356 Bacterial regulatory proteins, lacI family J4N39_05475 PF02613 Nitrate reductase delta subunit J4N39_05480 PF00072 Response regulator receiver domain J4N39_05480 PF00486 Transcriptional regulatory protein, C terminal J4N39_05485 PF02698 DUF218 domain J4N39_05490 PF13847 Methyltransferase domain J4N39_05495 PF03882 MukF winged-helix domain J4N39_05495 PF17193 MukF C-terminal domain J4N39_05495 PF17192 MukF middle domain J4N39_05500 PF04288 MukE-like family J4N39_05505 PF04310 MukB N-terminal J4N39_05505 PF16330 MukB hinge domain J4N39_05520 PF01370 NAD dependent epimerase/dehydratase family J4N39_05530 PF01226 Formate/nitrite transporter J4N39_05540 PF03649 Uncharacterised protein family (UPF0014) J4N39_05550 PF12680 SnoaL-like domain J4N39_05555 PF06796 Periplasmic nitrate reductase protein NapE J4N39_05560 PF03264 NapC/NirT cytochrome c family, N-terminal region J4N39_05565 PF01568 Molydopterin dinucleotide binding domain J4N39_05565 PF18364 Molybdopterin oxidoreductase N-terminal domain J4N39_05565 PF00384 Molybdopterin oxidoreductase J4N39_05570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_05575 PF01368 DHH family J4N39_05575 PF02833 DHHA2 domain J4N39_05590 PF01381 Helix-turn-helix J4N39_05590 PF08671 Anti-repressor SinI J4N39_05625 PF00005 ABC transporter J4N39_05630 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N39_05630 PF00005 ABC transporter J4N39_05635 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N39_05635 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_05640 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_05645 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N39_05650 PF02954 Bacterial regulatory protein, Fis family J4N39_05650 PF00158 Sigma-54 interaction domain J4N39_05655 PF04012 PspA/IM30 family J4N39_05660 PF06667 Phage shock protein B J4N39_05675 PF00529 HlyD membrane-fusion protein of T1SS J4N39_05675 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N39_05680 PF00873 AcrB/AcrD/AcrF family J4N39_05685 PF01053 Cys/Met metabolism PLP-dependent enzyme J4N39_05690 PF13091 PLD-like domain J4N39_05690 PF13396 Phospholipase_D-nuclease N-terminal J4N39_05695 PF00209 Sodium:neurotransmitter symporter family J4N39_05700 PF00849 RNA pseudouridylate synthase J4N39_05705 PF01170 Putative RNA methylase family UPF0020 J4N39_05705 PF02926 THUMP domain J4N39_05705 PF10672 S-adenosylmethionine-dependent methyltransferase J4N39_05725 PF03795 YCII-related domain J4N39_05730 PF03061 Thioesterase superfamily J4N39_05735 PF04279 Intracellular septation protein A J4N39_05740 PF00290 Tryptophan synthase alpha chain J4N39_05745 PF00291 Pyridoxal-phosphate dependent enzyme J4N39_05750 PF00218 Indole-3-glycerol phosphate synthase J4N39_05750 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase J4N39_05755 PF02885 Glycosyl transferase family, helical bundle domain J4N39_05755 PF00591 Glycosyl transferase family, a/b domain J4N39_05760 PF00117 Glutamine amidotransferase class-I J4N39_05765 PF04715 Anthranilate synthase component I, N terminal region J4N39_05765 PF00425 chorismate binding enzyme J4N39_05770 PF02811 PHP domain J4N39_05775 PF01300 Telomere recombination J4N39_05780 PF00849 RNA pseudouridylate synthase J4N39_05780 PF01479 S4 domain J4N39_05820 PF04269 Protein of unknown function, DUF440 J4N39_05825 PF01132 Elongation factor P (EF-P) OB domain J4N39_05825 PF08207 Elongation factor P (EF-P) KOW-like domain J4N39_05825 PF09285 Elongation factor P, C-terminal J4N39_05835 PF07690 Major Facilitator Superfamily J4N39_05845 PF04717 Type VI secretion system, phage-baseplate injector J4N39_05845 PF06715 Gp5 C-terminal repeat (3 copies) J4N39_05880 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath J4N39_05905 PF00004 ATPase family associated with various cellular activities (AAA) J4N39_05905 PF07724 AAA domain (Cdc48 subfamily) J4N39_05905 PF17871 AAA lid domain J4N39_05905 PF10431 C-terminal, D2-small domain, of ClpB protein J4N39_05935 PF06761 Intracellular multiplication and human macrophage-killing J4N39_05935 PF14331 ImcF-related N-terminal domain J4N39_05935 PF06744 Type VI secretion protein IcmF C-terminal J4N39_05950 PF03707 Bacterial signalling protein N terminal repeat J4N39_05950 PF00990 Diguanylate cyclase, GGDEF domain J4N39_05950 PF00563 EAL domain J4N39_05955 PF03104 DNA polymerase family B, exonuclease domain J4N39_05955 PF00136 DNA polymerase family B J4N39_05960 PF00196 Bacterial regulatory proteins, luxR family J4N39_05960 PF00072 Response regulator receiver domain J4N39_05965 PF08459 UvrC Helix-hairpin-helix N-terminal J4N39_05965 PF02151 UvrB/uvrC motif J4N39_05965 PF01541 GIY-YIG catalytic domain J4N39_05970 PF01066 CDP-alcohol phosphatidyltransferase J4N39_05975 PF07694 5TMR of 5TMR-LYT J4N39_05975 PF00990 Diguanylate cyclase, GGDEF domain J4N39_06005 PF00892 EamA-like transporter family J4N39_06015 PF01627 Hpt domain J4N39_06015 PF00072 Response regulator receiver domain J4N39_06015 PF01584 CheW-like domain J4N39_06015 PF02895 Signal transducing histidine kinase, homodimeric domain J4N39_06015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_06025 PF00202 Aminotransferase class-III J4N39_06030 PF16653 Saccharopine dehydrogenase C-terminal domain J4N39_06030 PF03435 Saccharopine dehydrogenase NADP binding domain J4N39_06035 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain J4N39_06040 PF17200 Single Cache domain 2 J4N39_06040 PF00672 HAMP domain J4N39_06040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_06055 PF00994 Probable molybdopterin binding domain J4N39_06065 PF00933 Glycosyl hydrolase family 3 N terminal domain J4N39_06070 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N39_06075 PF00268 Ribonucleotide reductase, small chain J4N39_06080 PF03477 ATP cone domain J4N39_06080 PF02867 Ribonucleotide reductase, barrel domain J4N39_06080 PF00317 Ribonucleotide reductase, all-alpha domain J4N39_06090 PF00521 DNA gyrase/topoisomerase IV, subunit A J4N39_06090 PF03989 DNA gyrase C-terminal domain, beta-propeller J4N39_06110 PF02335 Cytochrome c552 J4N39_06115 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) J4N39_06115 PF13435 Cytochrome c554 and c-prime J4N39_06120 PF13247 4Fe-4S dicluster domain J4N39_06125 PF03916 Polysulphide reductase, NrfD J4N39_06130 PF01578 Cytochrome C assembly protein J4N39_06130 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal J4N39_06135 PF08534 Redoxin J4N39_06140 PF03918 Cytochrome C biogenesis protein J4N39_06150 PF00925 GTP cyclohydrolase II J4N39_06175 PF01471 Putative peptidoglycan binding domain J4N39_06175 PF03734 L,D-transpeptidase catalytic domain J4N39_06180 PF05951 Bacterial protein of unknown function (DUF882) J4N39_06185 PF00753 Metallo-beta-lactamase superfamily J4N39_06200 PF03480 Bacterial extracellular solute-binding protein, family 7 J4N39_06210 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J4N39_06215 PF17200 Single Cache domain 2 J4N39_06215 PF07730 Histidine kinase J4N39_06220 PF00196 Bacterial regulatory proteins, luxR family J4N39_06220 PF00072 Response regulator receiver domain J4N39_06225 PF01047 MarR family J4N39_06230 PF02028 BCCT, betaine/carnitine/choline family transporter J4N39_06265 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) J4N39_06285 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) J4N39_06290 PF01926 50S ribosome-binding GTPase J4N39_06290 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal J4N39_06295 PF01926 50S ribosome-binding GTPase J4N39_06300 PF01252 Signal peptidase (SPase) II J4N39_06325 PF00465 Iron-containing alcohol dehydrogenase J4N39_06325 PF00171 Aldehyde dehydrogenase family J4N39_06335 PF02469 Fasciclin domain J4N39_06345 PF07733 Bacterial DNA polymerase III alpha NTPase domain J4N39_06345 PF14579 Helix-hairpin-helix motif J4N39_06345 PF02811 PHP domain J4N39_06345 PF00929 Exonuclease J4N39_06345 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J4N39_06350 PF00571 CBS domain J4N39_06355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_06355 PF00672 HAMP domain J4N39_06355 PF12729 Four helix bundle sensory module for signal transduction J4N39_06360 PF00155 Aminotransferase class I and II J4N39_06365 PF01966 HD domain J4N39_06365 PF00672 HAMP domain J4N39_06370 PF00672 HAMP domain J4N39_06370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_06370 PF17200 Single Cache domain 2 J4N39_06375 PF00152 tRNA synthetases class II (D, K and N) J4N39_06375 PF01336 OB-fold nucleic acid binding domain J4N39_06380 PF02743 Cache domain J4N39_06380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_06380 PF00672 HAMP domain J4N39_06390 PF03315 Serine dehydratase beta chain J4N39_06390 PF03313 Serine dehydratase alpha chain J4N39_06395 PF03222 Tryptophan/tyrosine permease family J4N39_06400 PF00293 NUDIX domain J4N39_06405 PF00072 Response regulator receiver domain J4N39_06405 PF00486 Transcriptional regulatory protein, C terminal J4N39_06410 PF04715 Anthranilate synthase component I, N terminal region J4N39_06410 PF00425 chorismate binding enzyme J4N39_06420 PF04317 YcjX-like family, DUF463 J4N39_06425 PF05128 Domain of unknown function (DUF697) J4N39_06430 PF00158 Sigma-54 interaction domain J4N39_06430 PF18024 Helix-turn-helix domain J4N39_06435 PF13302 Acetyltransferase (GNAT) domain J4N39_06450 PF06224 Winged helix DNA-binding domain J4N39_06460 PF00232 Glycosyl hydrolase family 1 J4N39_06470 PF00892 EamA-like transporter family J4N39_06480 PF00012 Hsp70 protein J4N39_06485 PF00012 Hsp70 protein J4N39_06520 PF02525 Flavodoxin-like fold J4N39_06525 PF11898 Domain of unknown function (DUF3418) J4N39_06525 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold J4N39_06525 PF00271 Helicase conserved C-terminal domain J4N39_06525 PF04408 Helicase associated domain (HA2) J4N39_06525 PF00270 DEAD/DEAH box helicase J4N39_06560 PF00144 Beta-lactamase J4N39_06565 PF02074 Carboxypeptidase Taq (M32) metallopeptidase J4N39_06570 PF01810 LysE type translocator J4N39_06575 PF00107 Zinc-binding dehydrogenase J4N39_06575 PF08240 Alcohol dehydrogenase GroES-like domain J4N39_06580 PF00072 Response regulator receiver domain J4N39_06580 PF00990 Diguanylate cyclase, GGDEF domain J4N39_06585 PF01235 Sodium:alanine symporter family J4N39_06620 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N39_06630 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain J4N39_06630 PF17203 Single cache domain 3 J4N39_06630 PF00989 PAS fold J4N39_06630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_06635 PF00072 Response regulator receiver domain J4N39_06635 PF12431 Transcriptional regulator J4N39_06650 PF01970 Tripartite tricarboxylate transporter TctA family J4N39_06670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_06670 PF00672 HAMP domain J4N39_06670 PF12729 Four helix bundle sensory module for signal transduction J4N39_06675 PF04074 YhcH/YjgK/YiaL J4N39_06690 PF00285 Citrate synthase, C-terminal domain J4N39_06695 PF00694 Aconitase C-terminal domain J4N39_06695 PF00330 Aconitase family (aconitate hydratase) J4N39_06700 PF04303 PrpF protein J4N39_06705 PF16177 Acetyl-coenzyme A synthetase N-terminus J4N39_06705 PF13193 AMP-binding enzyme C-terminal domain J4N39_06705 PF00501 AMP-binding enzyme J4N39_06715 PF00293 NUDIX domain J4N39_06720 PF04055 Radical SAM superfamily J4N39_06725 PF06508 Queuosine biosynthesis protein QueC J4N39_06730 PF00990 Diguanylate cyclase, GGDEF domain J4N39_06730 PF17158 Membrane-associated sensor, integral membrane domain J4N39_06750 PF00691 OmpA family J4N39_06800 PF10672 S-adenosylmethionine-dependent methyltransferase J4N39_06800 PF17785 PUA-like domain J4N39_06810 PF05724 Thiopurine S-methyltransferase (TPMT) J4N39_06815 PF02222 ATP-grasp domain J4N39_06815 PF01370 NAD dependent epimerase/dehydratase family J4N39_06820 PF01027 Inhibitor of apoptosis-promoting Bax1 J4N39_06825 PF00005 ABC transporter J4N39_06830 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_06835 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_06840 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N39_06845 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N39_06845 PF14824 Sirohaem biosynthesis protein central J4N39_06845 PF10414 Sirohaem synthase dimerisation region J4N39_06850 PF04461 Protein of unknown function (DUF520) J4N39_06855 PF00793 DAHP synthetase I family J4N39_06860 PF00391 PEP-utilising enzyme, mobile domain J4N39_06860 PF02896 PEP-utilising enzyme, TIM barrel domain J4N39_06860 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain J4N39_06875 PF17783 CvfB-like winged helix domain J4N39_06875 PF13509 S1 domain J4N39_06880 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF J4N39_06880 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF J4N39_06880 PF01189 16S rRNA methyltransferase RsmB/F J4N39_06885 PF02470 MlaD protein J4N39_06890 PF04403 Paraquat-inducible protein A J4N39_06895 PF00664 ABC transporter transmembrane region J4N39_06895 PF00005 ABC transporter J4N39_06900 PF13185 GAF domain J4N39_06905 PF04352 ProQ/FINO family J4N39_06905 PF17516 ProQ C-terminal domain J4N39_06910 PF11818 C-terminal domain of tail specific protease (DUF3340) J4N39_06910 PF00595 PDZ domain J4N39_06910 PF03572 Peptidase family S41 J4N39_06910 PF17804 Tail specific protease N-terminal domain J4N39_06920 PF11940 Domain of unknown function (DUF3458) Ig-like fold J4N39_06920 PF17432 Domain of unknown function (DUF3458_C) ARM repeats J4N39_06920 PF01433 Peptidase family M1 domain J4N39_06930 PF05088 Bacterial NAD-glutamate dehydrogenase J4N39_06935 PF01180 Dihydroorotate dehydrogenase J4N39_06940 PF07126 Cell-division protein ZapC J4N39_06945 PF01170 Putative RNA methylase family UPF0020 J4N39_06945 PF02926 THUMP domain J4N39_06945 PF10672 S-adenosylmethionine-dependent methyltransferase J4N39_06955 PF12848 ABC transporter J4N39_06955 PF16326 ABC transporter C-terminal domain J4N39_06955 PF00005 ABC transporter J4N39_06965 PF04957 Ribosome modulation factor J4N39_06970 PF07977 FabA-like domain J4N39_06975 PF05362 Lon protease (S16) C-terminal proteolytic domain J4N39_06975 PF13654 AAA domain J4N39_06980 PF17414 MatP C-terminal ribbon-helix-helix domain J4N39_06980 PF06303 MatP N-terminal domain J4N39_06995 PF09308 LuxQ, periplasmic J4N39_06995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_06995 PF00512 His Kinase A (phospho-acceptor) domain J4N39_06995 PF00072 Response regulator receiver domain J4N39_07010 PF00115 Cytochrome C and Quinol oxidase polypeptide I J4N39_07025 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP J4N39_07025 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J4N39_07035 PF00403 Heavy-metal-associated domain J4N39_07050 PF00027 Cyclic nucleotide-binding domain J4N39_07050 PF13545 Crp-like helix-turn-helix domain J4N39_07055 PF00582 Universal stress protein family J4N39_07060 PF01171 PP-loop family J4N39_07080 PF08402 TOBE domain J4N39_07080 PF00005 ABC transporter J4N39_07085 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_07090 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_07095 PF13416 Bacterial extracellular solute-binding protein J4N39_07100 PF13416 Bacterial extracellular solute-binding protein J4N39_07105 PF17151 Periplasmic sensor domain J4N39_07105 PF00990 Diguanylate cyclase, GGDEF domain J4N39_07115 PF02146 Sir2 family J4N39_07120 PF00909 Ammonium Transporter Family J4N39_07125 PF01292 Prokaryotic cytochrome b561 J4N39_07130 PF13247 4Fe-4S dicluster domain J4N39_07135 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J4N39_07135 PF00384 Molybdopterin oxidoreductase J4N39_07135 PF12838 4Fe-4S dicluster domain J4N39_07135 PF01568 Molydopterin dinucleotide binding domain J4N39_07135 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region J4N39_07165 PF02634 FdhD/NarQ family J4N39_07170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_07170 PF00672 HAMP domain J4N39_07175 PF00989 PAS fold J4N39_07175 PF00512 His Kinase A (phospho-acceptor) domain J4N39_07175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_07180 PF02954 Bacterial regulatory protein, Fis family J4N39_07180 PF00158 Sigma-54 interaction domain J4N39_07180 PF00072 Response regulator receiver domain J4N39_07185 PF12849 PBP superfamily domain J4N39_07190 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_07195 PF08402 TOBE domain J4N39_07195 PF00005 ABC transporter J4N39_07200 PF12804 MobA-like NTP transferase domain J4N39_07205 PF00994 Probable molybdopterin binding domain J4N39_07205 PF03454 MoeA C-terminal region (domain IV) J4N39_07205 PF03453 MoeA N-terminal region (domain I and II) J4N39_07215 PF00884 Sulfatase J4N39_07215 PF11893 Domain of unknown function (DUF3413) J4N39_07220 PF00480 ROK family J4N39_07225 PF03942 DTW domain J4N39_07235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_07235 PF12729 Four helix bundle sensory module for signal transduction J4N39_07235 PF00672 HAMP domain J4N39_07240 PF00877 NlpC/P60 family J4N39_07250 PF05230 MASE2 domain J4N39_07250 PF00990 Diguanylate cyclase, GGDEF domain J4N39_07255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_07255 PF00512 His Kinase A (phospho-acceptor) domain J4N39_07255 PF00072 Response regulator receiver domain J4N39_07255 PF09456 RcsC Alpha-Beta-Loop (ABL) J4N39_07260 PF03881 Fructosamine kinase J4N39_07270 PF00677 Lumazine binding domain J4N39_07275 PF01554 MatE J4N39_07280 PF01068 ATP dependent DNA ligase domain J4N39_07280 PF14743 DNA ligase OB-like domain J4N39_07295 PF12419 SNF2 Helicase protein J4N39_07295 PF00176 SNF2 family N-terminal domain J4N39_07295 PF00271 Helicase conserved C-terminal domain J4N39_07315 PF00939 Sodium:sulfate symporter transmembrane region J4N39_07335 PF02798 Glutathione S-transferase, N-terminal domain J4N39_07335 PF14497 Glutathione S-transferase, C-terminal domain J4N39_07345 PF04209 homogentisate 1,2-dioxygenase J4N39_07350 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N39_07360 PF01546 Peptidase family M20/M25/M40 J4N39_07360 PF07687 Peptidase dimerisation domain J4N39_07395 PF13416 Bacterial extracellular solute-binding protein J4N39_07400 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_07405 PF00005 ABC transporter J4N39_07410 PF01066 CDP-alcohol phosphatidyltransferase J4N39_07415 PF00563 EAL domain J4N39_07415 PF03707 Bacterial signalling protein N terminal repeat J4N39_07415 PF00990 Diguanylate cyclase, GGDEF domain J4N39_07420 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain J4N39_07420 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain J4N39_07425 PF10928 Protein of unknown function (DUF2810) J4N39_07430 PF01863 Protein of unknown function DUF45 J4N39_07445 PF07885 Ion channel J4N39_07455 PF00563 EAL domain J4N39_07455 PF03707 Bacterial signalling protein N terminal repeat J4N39_07455 PF00990 Diguanylate cyclase, GGDEF domain J4N39_07465 PF05971 RNA methyltransferase J4N39_07470 PF00072 Response regulator receiver domain J4N39_07480 PF03466 LysR substrate binding domain J4N39_07480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_07495 PF00990 Diguanylate cyclase, GGDEF domain J4N39_07505 PF00463 Isocitrate lyase family J4N39_07510 PF01274 Malate synthase J4N39_07530 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J4N39_07530 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J4N39_07535 PF00005 ABC transporter J4N39_07540 PF01032 FecCD transport family J4N39_07545 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family J4N39_07555 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase J4N39_07560 PF02654 Cobalamin-5-phosphate synthase J4N39_07565 PF02277 Phosphoribosyltransferase J4N39_07570 PF01613 Flavin reductase like domain J4N39_07575 PF13460 NAD(P)H-binding J4N39_07580 PF00375 Sodium:dicarboxylate symporter family J4N39_07585 PF00990 Diguanylate cyclase, GGDEF domain J4N39_07585 PF00072 Response regulator receiver domain J4N39_07590 PF00929 Exonuclease J4N39_07590 PF08411 Exonuclease C-terminal J4N39_07595 PF03788 LrgA family J4N39_07600 PF04172 LrgB-like family J4N39_07605 PF01497 Periplasmic binding protein J4N39_07610 PF01032 FecCD transport family J4N39_07615 PF01032 FecCD transport family J4N39_07620 PF00005 ABC transporter J4N39_07625 PF06445 GyrI-like small molecule binding domain J4N39_07625 PF12833 Helix-turn-helix domain J4N39_07630 PF07715 TonB-dependent Receptor Plug Domain J4N39_07630 PF00593 TonB dependent receptor J4N39_07640 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J4N39_07640 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region J4N39_07645 PF04358 DsrC like protein J4N39_07650 PF00708 Acylphosphatase J4N39_07655 PF00672 HAMP domain J4N39_07655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_07655 PF02743 Cache domain J4N39_07660 PF00216 Bacterial DNA-binding protein J4N39_07670 PF02687 FtsX-like permease family J4N39_07670 PF12704 MacB-like periplasmic core domain J4N39_07670 PF00005 ABC transporter J4N39_07675 PF12704 MacB-like periplasmic core domain J4N39_07675 PF02687 FtsX-like permease family J4N39_07675 PF00005 ABC transporter J4N39_07690 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain J4N39_07690 PF01588 Putative tRNA binding domain J4N39_07690 PF03147 Ferredoxin-fold anticodon binding domain J4N39_07690 PF03484 tRNA synthetase B5 domain J4N39_07690 PF03483 B3/4 domain J4N39_07695 PF01409 tRNA synthetases class II core domain (F) J4N39_07695 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain J4N39_07700 PF00072 Response regulator receiver domain J4N39_07700 PF00990 Diguanylate cyclase, GGDEF domain J4N39_07705 PF11852 Domain of unknown function (DUF3372) J4N39_07705 PF18494 Pullulanase Ins domain J4N39_07705 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J4N39_07705 PF17967 Pullulanase N2 domain J4N39_07705 PF03714 Bacterial pullanase-associated domain J4N39_07710 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus J4N39_07720 PF02803 Thiolase, C-terminal domain J4N39_07720 PF00108 Thiolase, N-terminal domain J4N39_07725 PF00106 short chain dehydrogenase J4N39_07730 PF00873 AcrB/AcrD/AcrF family J4N39_07735 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N39_07745 PF00440 Bacterial regulatory proteins, tetR family J4N39_07770 PF01810 LysE type translocator J4N39_07780 PF01810 LysE type translocator J4N39_07790 PF14552 Tautomerase enzyme J4N39_07800 PF00583 Acetyltransferase (GNAT) family J4N39_07810 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N39_07810 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J4N39_07825 PF12848 ABC transporter J4N39_07825 PF16326 ABC transporter C-terminal domain J4N39_07825 PF00005 ABC transporter J4N39_07830 PF05552 Conserved TM helix J4N39_07830 PF00924 Mechanosensitive ion channel J4N39_07835 PF01699 Sodium/calcium exchanger protein J4N39_07840 PF10503 Esterase PHB depolymerase J4N39_07850 PF01177 Asp/Glu/Hydantoin racemase J4N39_07865 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) J4N39_07870 PF04143 Sulphur transport J4N39_07885 PF00106 short chain dehydrogenase J4N39_07895 PF03831 PhnA domain J4N39_07895 PF08274 PhnA Zinc-Ribbon J4N39_07925 PF09905 DNA-binding protein VF530 J4N39_07935 PF01906 Putative heavy-metal-binding J4N39_07965 PF04266 ASCH domain J4N39_07980 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J4N39_07990 PF12464 Maltose acetyltransferase J4N39_07990 PF00132 Bacterial transferase hexapeptide (six repeats) J4N39_07995 PF00102 Protein-tyrosine phosphatase J4N39_07995 PF09013 YopH, N-terminal J4N39_08275 PF13495 Phage integrase, N-terminal SAM-like domain J4N39_08275 PF00589 Phage integrase family J4N39_08280 PF00453 Ribosomal protein L20 J4N39_08285 PF01632 Ribosomal protein L35 J4N39_08290 PF05198 Translation initiation factor IF-3, N-terminal domain J4N39_08290 PF00707 Translation initiation factor IF-3, C-terminal domain J4N39_08295 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J4N39_08295 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J4N39_08295 PF02824 TGS domain J4N39_08295 PF03129 Anticodon binding domain J4N39_08300 PF00392 Bacterial regulatory proteins, gntR family J4N39_08300 PF07702 UTRA domain J4N39_08310 PF00491 Arginase family J4N39_08315 PF17391 Urocanase N-terminal domain J4N39_08315 PF01175 Urocanase Rossmann-like domain J4N39_08315 PF17392 Urocanase C-terminal domain J4N39_08320 PF00221 Aromatic amino acid lyase J4N39_08330 PF04191 Phospholipid methyltransferase J4N39_08340 PF02913 FAD linked oxidases, C-terminal domain J4N39_08340 PF13183 4Fe-4S dicluster domain J4N39_08340 PF01565 FAD binding domain J4N39_08370 PF01259 SAICAR synthetase J4N39_08380 PF02253 Phospholipase A1 J4N39_08385 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold J4N39_08385 PF00271 Helicase conserved C-terminal domain J4N39_08385 PF04408 Helicase associated domain (HA2) J4N39_08385 PF11898 Domain of unknown function (DUF3418) J4N39_08385 PF00270 DEAD/DEAH box helicase J4N39_08390 PF03949 Malic enzyme, NAD binding domain J4N39_08390 PF00390 Malic enzyme, N-terminal domain J4N39_08400 PF02698 DUF218 domain J4N39_08405 PF00990 Diguanylate cyclase, GGDEF domain J4N39_08405 PF17151 Periplasmic sensor domain J4N39_08415 PF00266 Aminotransferase class-V J4N39_08430 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N39_08435 PF00664 ABC transporter transmembrane region J4N39_08435 PF00005 ABC transporter J4N39_08440 PF00005 ABC transporter J4N39_08440 PF00664 ABC transporter transmembrane region J4N39_08445 PF00266 Aminotransferase class-V J4N39_08455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_08455 PF00512 His Kinase A (phospho-acceptor) domain J4N39_08455 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N39_08470 PF04994 TfoX C-terminal domain J4N39_08470 PF04993 TfoX N-terminal domain J4N39_08480 PF03956 Lysine exporter LysO J4N39_08490 PF00282 Pyridoxal-dependent decarboxylase conserved domain J4N39_08495 PF01380 SIS domain J4N39_08495 PF01418 Helix-turn-helix domain, rpiR family J4N39_08500 PF00465 Iron-containing alcohol dehydrogenase J4N39_08505 PF00462 Glutaredoxin J4N39_08510 PF06826 Predicted Permease Membrane Region J4N39_08510 PF02080 TrkA-C domain J4N39_08515 PF07055 Enoyl reductase FAD binding domain J4N39_08515 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase J4N39_08515 PF12241 Trans-2-enoyl-CoA reductase catalytic region J4N39_08520 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J4N39_08520 PF02770 Acyl-CoA dehydrogenase, middle domain J4N39_08520 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J4N39_08520 PF09317 Domain of unknown function (DUF1974) J4N39_08525 PF16295 Tetracyclin repressor-like, C-terminal domain J4N39_08525 PF00440 Bacterial regulatory proteins, tetR family J4N39_08530 PF06965 Na+/H+ antiporter 1 J4N39_08545 PF00005 ABC transporter J4N39_08550 PF01554 MatE J4N39_08555 PF13460 NAD(P)H-binding J4N39_08555 PF11066 Protein of unknown function (DUF2867) J4N39_08565 PF07690 Major Facilitator Superfamily J4N39_08570 PF00849 RNA pseudouridylate synthase J4N39_08570 PF01479 S4 domain J4N39_08575 PF04851 Type III restriction enzyme, res subunit J4N39_08575 PF00271 Helicase conserved C-terminal domain J4N39_08585 PF00486 Transcriptional regulatory protein, C terminal J4N39_08585 PF00072 Response regulator receiver domain J4N39_08590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_08595 PF01386 Ribosomal L25p family J4N39_08600 PF06945 Protein of unknown function (DUF1289) J4N39_08630 PF03466 LysR substrate binding domain J4N39_08630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_08645 PF03606 C4-dicarboxylate anaerobic carrier J4N39_08650 PF03707 Bacterial signalling protein N terminal repeat J4N39_08650 PF00563 EAL domain J4N39_08650 PF00990 Diguanylate cyclase, GGDEF domain J4N39_08675 PF01757 Acyltransferase family J4N39_08680 PF01609 Transposase DDE domain J4N39_08680 PF13808 DDE_Tnp_1-associated J4N39_08775 PF10549 ORF11CD3 domain J4N39_08775 PF09669 Phage regulatory protein Rha (Phage_pRha) J4N39_08950 PF04098 Rad52/22 family double-strand break repair protein J4N39_08970 PF00436 Single-strand binding protein family J4N39_08990 PF12167 Arm DNA-binding domain J4N39_08990 PF00589 Phage integrase family J4N39_08995 PF04055 Radical SAM superfamily J4N39_08995 PF11842 Domain of unknown function (DUF3362) J4N39_08995 PF08497 Radical SAM N-terminal J4N39_09010 PF00563 EAL domain J4N39_09010 PF00990 Diguanylate cyclase, GGDEF domain J4N39_09010 PF13188 PAS domain J4N39_09010 PF03707 Bacterial signalling protein N terminal repeat J4N39_09015 PF00072 Response regulator receiver domain J4N39_09015 PF01339 CheB methylesterase J4N39_09020 PF01739 CheR methyltransferase, SAM binding domain J4N39_09020 PF03705 CheR methyltransferase, all-alpha domain J4N39_09025 PF01584 CheW-like domain J4N39_09030 PF01584 CheW-like domain J4N39_09035 PF02203 Tar ligand binding domain homologue J4N39_09035 PF00672 HAMP domain J4N39_09035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_09040 PF01627 Hpt domain J4N39_09040 PF09078 CheY binding J4N39_09040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_09040 PF01584 CheW-like domain J4N39_09040 PF02895 Signal transducing histidine kinase, homodimeric domain J4N39_09050 PF00072 Response regulator receiver domain J4N39_09060 PF03707 Bacterial signalling protein N terminal repeat J4N39_09060 PF00990 Diguanylate cyclase, GGDEF domain J4N39_09060 PF00563 EAL domain J4N39_09075 PF00893 Small Multidrug Resistance protein J4N39_09090 PF13186 Iron-sulfur cluster-binding domain J4N39_09090 PF04055 Radical SAM superfamily J4N39_09095 PF03781 Sulfatase-modifying factor enzyme 1 J4N39_09105 PF03466 LysR substrate binding domain J4N39_09105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_09120 PF00092 von Willebrand factor type A domain J4N39_09120 PF07584 Aerotolerance regulator N-terminal J4N39_09140 PF17863 AAA lid domain J4N39_09140 PF07726 ATPase family associated with various cellular activities (AAA) J4N39_09145 PF00884 Sulfatase J4N39_09150 PF02253 Phospholipase A1 J4N39_09160 PF01717 Cobalamin-independent synthase, Catalytic domain J4N39_09160 PF08267 Cobalamin-independent synthase, N-terminal domain J4N39_09175 PF04229 GrpB protein J4N39_09185 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N39_09185 PF00005 ABC transporter J4N39_09190 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N39_09190 PF00005 ABC transporter J4N39_09195 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N39_09200 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_09205 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_09225 PF00990 Diguanylate cyclase, GGDEF domain J4N39_09250 PF00171 Aldehyde dehydrogenase family J4N39_09255 PF02954 Bacterial regulatory protein, Fis family J4N39_09255 PF00158 Sigma-54 interaction domain J4N39_09255 PF01590 GAF domain J4N39_09270 PF01773 Na+ dependent nucleoside transporter N-terminus J4N39_09270 PF07670 Nucleoside recognition J4N39_09270 PF07662 Na+ dependent nucleoside transporter C-terminus J4N39_09275 PF01048 Phosphorylase superfamily J4N39_09280 PF01979 Amidohydrolase family J4N39_09295 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J4N39_09315 PF00990 Diguanylate cyclase, GGDEF domain J4N39_09315 PF08448 PAS fold J4N39_09335 PF02463 RecF/RecN/SMC N terminal domain J4N39_09335 PF06470 SMC proteins Flexible Hinge Domain J4N39_09340 PF00145 C-5 cytosine-specific DNA methylase J4N39_09350 PF06610 L-alanine exporter J4N39_09355 PF09308 LuxQ, periplasmic J4N39_09355 PF00072 Response regulator receiver domain J4N39_09355 PF00512 His Kinase A (phospho-acceptor) domain J4N39_09355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_09370 PF00756 Putative esterase J4N39_09375 PF00107 Zinc-binding dehydrogenase J4N39_09375 PF08240 Alcohol dehydrogenase GroES-like domain J4N39_09380 PF03466 LysR substrate binding domain J4N39_09380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_09385 PF02445 Quinolinate synthetase A protein J4N39_09390 PF16331 TolA binding protein trimerisation J4N39_09390 PF13174 Tetratricopeptide repeat J4N39_09395 PF00691 OmpA family J4N39_09400 PF07676 WD40-like Beta Propeller Repeat J4N39_09400 PF04052 TolB amino-terminal domain J4N39_09410 PF02472 Biopolymer transport protein ExbD/TolR J4N39_09415 PF01618 MotA/TolQ/ExbB proton channel family J4N39_09420 PF03061 Thioesterase superfamily J4N39_09430 PF08173 Membrane bound YbgT-like protein J4N39_09435 PF02322 Cytochrome bd terminal oxidase subunit II J4N39_09440 PF01654 Cytochrome bd terminal oxidase subunit I J4N39_09445 PF17864 RuvB AAA lid domain J4N39_09445 PF05496 Holliday junction DNA helicase RuvB P-loop domain J4N39_09445 PF05491 RuvB C-terminal winged helix domain J4N39_09450 PF01330 RuvA N terminal domain J4N39_09450 PF07499 RuvA, C-terminal domain J4N39_09455 PF02075 Crossover junction endodeoxyribonuclease RuvC J4N39_09470 PF00152 tRNA synthetases class II (D, K and N) J4N39_09470 PF02938 GAD domain J4N39_09470 PF01336 OB-fold nucleic acid binding domain J4N39_09475 PF01904 Protein of unknown function DUF72 J4N39_09480 PF13649 Methyltransferase domain J4N39_09485 PF08003 Protein of unknown function (DUF1698) J4N39_09490 PF08443 RimK-like ATP-grasp domain J4N39_09490 PF18030 RimK PreATP-grasp domain J4N39_09505 PF00265 Thymidine kinase J4N39_09510 PF09190 DALR domain J4N39_09510 PF01406 tRNA synthetases class I (C) catalytic domain J4N39_09515 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J4N39_09520 PF00149 Calcineurin-like phosphoesterase J4N39_09525 PF08668 HDOD domain J4N39_09525 PF00563 EAL domain J4N39_09530 PF02810 SEC-C motif J4N39_09535 PF01502 Phosphoribosyl-AMP cyclohydrolase J4N39_09535 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase J4N39_09540 PF00977 Histidine biosynthesis protein J4N39_09545 PF00977 Histidine biosynthesis protein J4N39_09550 PF00117 Glutamine amidotransferase class-I J4N39_09555 PF08645 Polynucleotide kinase 3 phosphatase J4N39_09555 PF00475 Imidazoleglycerol-phosphate dehydratase J4N39_09560 PF00155 Aminotransferase class I and II J4N39_09565 PF00815 Histidinol dehydrogenase J4N39_09570 PF01634 ATP phosphoribosyltransferase J4N39_09570 PF08029 HisG, C-terminal domain J4N39_09575 PF03553 Na+/H+ antiporter family J4N39_09580 PF00816 H-NS histone family J4N39_09585 PF00294 pfkB family carbohydrate kinase J4N39_09590 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) J4N39_09595 PF13609 Gram-negative porin J4N39_09600 PF06733 DEAD_2 J4N39_09600 PF13307 Helicase C-terminal domain J4N39_09605 PF01925 Sulfite exporter TauE/SafE J4N39_09615 PF10689 Protein of unknown function (DUF2496) J4N39_09625 PF16036 Chalcone isomerase-like J4N39_09650 PF00106 short chain dehydrogenase J4N39_09660 PF01435 Peptidase family M48 J4N39_09675 PF08241 Methyltransferase domain J4N39_09680 PF00155 Aminotransferase class I and II J4N39_09685 PF04055 Radical SAM superfamily J4N39_09685 PF06968 Biotin and Thiamin Synthesis associated domain J4N39_09690 PF00202 Aminotransferase class-III J4N39_09695 PF02403 Seryl-tRNA synthetase N-terminal domain J4N39_09695 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J4N39_09700 PF00004 ATPase family associated with various cellular activities (AAA) J4N39_09700 PF16193 AAA C-terminal domain J4N39_09700 PF12002 MgsA AAA+ ATPase C terminal J4N39_09705 PF03548 Outer membrane lipoprotein carrier protein LolA J4N39_09710 PF13491 4TM region of DNA translocase FtsK/SpoIIIE J4N39_09710 PF17854 FtsK alpha domain J4N39_09710 PF01580 FtsK/SpoIIIE family J4N39_09710 PF09397 Ftsk gamma domain J4N39_09715 PF01037 Lrp/AsnC ligand binding domain J4N39_09720 PF01262 Alanine dehydrogenase/PNT, C-terminal domain J4N39_09720 PF05222 Alanine dehydrogenase/PNT, N-terminal domain J4N39_09730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_09730 PF03466 LysR substrate binding domain J4N39_09740 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) J4N39_09750 PF13276 HTH-like domain J4N39_09750 PF00665 Integrase core domain J4N39_09750 PF13333 Integrase core domain J4N39_09755 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family J4N39_09760 PF18073 Rubredoxin metal binding domain J4N39_09765 PF06305 Lipopolysaccharide assembly protein A domain J4N39_09770 PF00216 Bacterial DNA-binding protein J4N39_09775 PF00575 S1 RNA binding domain J4N39_09780 PF02224 Cytidylate kinase J4N39_09790 PF01343 Peptidase family S49 J4N39_09790 PF08496 Peptidase family S49 N-terminal J4N39_09795 PF00106 short chain dehydrogenase J4N39_09800 PF01584 CheW-like domain J4N39_09800 PF00072 Response regulator receiver domain J4N39_09805 PF00480 ROK family J4N39_09810 PF00224 Pyruvate kinase, barrel domain J4N39_09810 PF02887 Pyruvate kinase, alpha/beta domain J4N39_09815 PF01734 Patatin-like phospholipase J4N39_09830 PF00367 phosphotransferase system, EIIB J4N39_09830 PF02378 Phosphotransferase system, EIIC J4N39_09835 PF01026 TatD related DNase J4N39_09840 PF09115 DNA polymerase III, delta subunit, C terminal J4N39_09845 PF02223 Thymidylate kinase J4N39_09850 PF02618 YceG-like family J4N39_09855 PF01063 Amino-transferase class IV J4N39_09860 PF02801 Beta-ketoacyl synthase, C-terminal domain J4N39_09860 PF00109 Beta-ketoacyl synthase, N-terminal domain J4N39_09865 PF00550 Phosphopantetheine attachment site J4N39_09875 PF00698 Acyl transferase domain J4N39_09880 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J4N39_09880 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J4N39_09885 PF02504 Fatty acid synthesis protein J4N39_09890 PF01783 Ribosomal L32p protein family J4N39_09895 PF02620 Large ribosomal RNA subunit accumulation protein YceD J4N39_09900 PF02545 Maf-like protein J4N39_09905 PF00849 RNA pseudouridylate synthase J4N39_09905 PF01479 S4 domain J4N39_09910 PF12111 Polyribonucleotide phosphorylase C terminal J4N39_09910 PF10150 Ribonuclease E/G family J4N39_09910 PF00575 S1 RNA binding domain J4N39_09915 PF01740 STAS domain J4N39_09915 PF00916 Sulfate permease family J4N39_09920 PF01451 Low molecular weight phosphotyrosine protein phosphatase J4N39_09925 PF12557 Cob(I)alamin adenosyltransferase N terminal J4N39_09925 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP J4N39_09940 PF05170 AsmA family J4N39_09945 PF00485 Phosphoribulokinase / Uridine kinase family J4N39_09950 PF10609 NUBPL iron-transfer P-loop NTPase J4N39_09955 PF09334 tRNA synthetases class I (M) J4N39_09955 PF01588 Putative tRNA binding domain J4N39_09965 PF07840 FadR C-terminal domain J4N39_09965 PF00392 Bacterial regulatory proteins, gntR family J4N39_09970 PF06450 Bacterial Na+/H+ antiporter B (NhaB) J4N39_09975 PF02600 Disulfide bond formation protein DsbB J4N39_09980 PF02810 SEC-C motif J4N39_09980 PF07517 SecA DEAD-like domain J4N39_09980 PF01043 SecA preprotein cross-linking domain J4N39_09980 PF07516 SecA Wing and Scaffold domain J4N39_09985 PF01207 Dihydrouridine synthase (Dus) J4N39_09990 PF00990 Diguanylate cyclase, GGDEF domain J4N39_09995 PF00128 Alpha amylase, catalytic domain J4N39_09995 PF02903 Alpha amylase, N-terminal ig-like domain J4N39_10000 PF00005 ABC transporter J4N39_10005 PF02653 Branched-chain amino acid transport system / permease component J4N39_10015 PF04217 Protein of unknown function, DUF412 J4N39_10020 PF00871 Acetokinase family J4N39_10025 PF07085 DRTGG domain J4N39_10025 PF01515 Phosphate acetyl/butaryl transferase J4N39_10040 PF00356 Bacterial regulatory proteins, lacI family J4N39_10045 PF00294 pfkB family carbohydrate kinase J4N39_10050 PF13407 Periplasmic binding protein domain J4N39_10055 PF02653 Branched-chain amino acid transport system / permease component J4N39_10060 PF00005 ABC transporter J4N39_10065 PF05025 RbsD / FucU transport protein family J4N39_10070 PF04116 Fatty acid hydroxylase superfamily J4N39_10080 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term J4N39_10080 PF12833 Helix-turn-helix domain J4N39_10095 PF07690 Major Facilitator Superfamily J4N39_10105 PF00501 AMP-binding enzyme J4N39_10105 PF13193 AMP-binding enzyme C-terminal domain J4N39_10110 PF13378 Enolase C-terminal domain-like J4N39_10115 PF00378 Enoyl-CoA hydratase/isomerase J4N39_10120 PF12697 Alpha/beta hydrolase family J4N39_10125 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J4N39_10125 PF16582 Middle domain of thiamine pyrophosphate J4N39_10125 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J4N39_10130 PF00425 chorismate binding enzyme J4N39_10135 PF00155 Aminotransferase class I and II J4N39_10145 PF13286 Phosphohydrolase-associated domain J4N39_10145 PF01966 HD domain J4N39_10150 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH J4N39_10185 PF10531 SLBB domain J4N39_10190 PF13145 PPIC-type PPIASE domain J4N39_10195 PF00216 Bacterial DNA-binding protein J4N39_10200 PF02190 ATP-dependent protease La (LON) substrate-binding domain J4N39_10200 PF00004 ATPase family associated with various cellular activities (AAA) J4N39_10200 PF05362 Lon protease (S16) C-terminal proteolytic domain J4N39_10205 PF06689 ClpX C4-type zinc finger J4N39_10205 PF10431 C-terminal, D2-small domain, of ClpB protein J4N39_10205 PF07724 AAA domain (Cdc48 subfamily) J4N39_10210 PF00574 Clp protease J4N39_10215 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N39_10215 PF05698 Bacterial trigger factor protein (TF) C-terminus J4N39_10215 PF05697 Bacterial trigger factor protein (TF) J4N39_10220 PF02743 Cache domain J4N39_10220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_10220 PF00512 His Kinase A (phospho-acceptor) domain J4N39_10225 PF00158 Sigma-54 interaction domain J4N39_10225 PF02954 Bacterial regulatory protein, Fis family J4N39_10225 PF00072 Response regulator receiver domain J4N39_10245 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J4N39_10250 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component J4N39_10255 PF03480 Bacterial extracellular solute-binding protein, family 7 J4N39_10260 PF03459 TOBE domain J4N39_10260 PF00005 ABC transporter J4N39_10260 PF17912 MalK OB fold domain J4N39_10265 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_10270 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_10275 PF01547 Bacterial extracellular solute-binding protein J4N39_10280 PF00672 HAMP domain J4N39_10280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_10280 PF00512 His Kinase A (phospho-acceptor) domain J4N39_10285 PF00672 HAMP domain J4N39_10285 PF17200 Single Cache domain 2 J4N39_10285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_10290 PF00486 Transcriptional regulatory protein, C terminal J4N39_10290 PF00072 Response regulator receiver domain J4N39_10295 PF00672 HAMP domain J4N39_10295 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J4N39_10295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_10295 PF01627 Hpt domain J4N39_10295 PF00512 His Kinase A (phospho-acceptor) domain J4N39_10295 PF00072 Response regulator receiver domain J4N39_10330 PF12697 Alpha/beta hydrolase family J4N39_10330 PF08241 Methyltransferase domain J4N39_10340 PF07715 TonB-dependent Receptor Plug Domain J4N39_10345 PF00005 ABC transporter J4N39_10350 PF01032 FecCD transport family J4N39_10355 PF01032 FecCD transport family J4N39_10360 PF01497 Periplasmic binding protein J4N39_10365 PF01804 Penicillin amidase J4N39_10370 PF12833 Helix-turn-helix domain J4N39_10370 PF01497 Periplasmic binding protein J4N39_10375 PF08021 Siderophore-interacting FAD-binding domain J4N39_10375 PF04954 Siderophore-interacting protein J4N39_10390 PF02796 Helix-turn-helix domain of resolvase J4N39_10390 PF00239 Resolvase, N terminal domain J4N39_10405 PF00075 RNase H J4N39_10420 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain J4N39_10420 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain J4N39_10425 PF13406 Transglycosylase SLT domain J4N39_10430 PF05166 YcgL domain J4N39_10435 PF03775 Septum formation inhibitor MinC, C-terminal domain J4N39_10435 PF05209 Septum formation inhibitor MinC, N-terminal domain J4N39_10440 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J4N39_10445 PF03776 Septum formation topological specificity factor MinE J4N39_10450 PF00570 HRDC domain J4N39_10450 PF01612 3'-5' exonuclease J4N39_10455 PF00501 AMP-binding enzyme J4N39_10455 PF13193 AMP-binding enzyme C-terminal domain J4N39_10460 PF12697 Alpha/beta hydrolase family J4N39_10475 PF00814 Glycoprotease family J4N39_10480 PF13307 Helicase C-terminal domain J4N39_10480 PF04851 Type III restriction enzyme, res subunit J4N39_10490 PF00551 Formyl transferase J4N39_10490 PF01842 ACT domain J4N39_10495 PF00672 HAMP domain J4N39_10495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_10495 PF17200 Single Cache domain 2 J4N39_10505 PF00145 C-5 cytosine-specific DNA methylase J4N39_10510 PF06185 YecM protein J4N39_10515 PF00750 tRNA synthetases class I (R) J4N39_10515 PF03485 Arginyl tRNA synthetase N terminal domain J4N39_10515 PF05746 DALR anticodon binding domain J4N39_10520 PF03279 Bacterial lipid A biosynthesis acyltransferase J4N39_10535 PF00512 His Kinase A (phospho-acceptor) domain J4N39_10535 PF12833 Helix-turn-helix domain J4N39_10535 PF07494 Two component regulator propeller J4N39_10535 PF00072 Response regulator receiver domain J4N39_10535 PF07495 Y_Y_Y domain J4N39_10535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_10540 PF01476 LysM domain J4N39_10540 PF08525 Opacity-associated protein A N-terminal motif J4N39_10540 PF01551 Peptidase family M23 J4N39_10545 PF01297 Zinc-uptake complex component A periplasmic J4N39_10550 PF00005 ABC transporter J4N39_10555 PF00950 ABC 3 transport family J4N39_10560 PF02629 CoA binding domain J4N39_10560 PF00549 CoA-ligase J4N39_10565 PF08442 ATP-grasp domain J4N39_10565 PF00549 CoA-ligase J4N39_10570 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J4N39_10570 PF00364 Biotin-requiring enzyme J4N39_10570 PF02817 e3 binding domain J4N39_10575 PF16078 2-oxoglutarate dehydrogenase N-terminus J4N39_10575 PF00676 Dehydrogenase E1 component J4N39_10575 PF16870 2-oxoglutarate dehydrogenase C-terminal J4N39_10575 PF02779 Transketolase, pyrimidine binding domain J4N39_10580 PF13085 2Fe-2S iron-sulfur cluster binding domain J4N39_10585 PF00890 FAD binding domain J4N39_10585 PF02910 Fumarate reductase flavoprotein C-term J4N39_10590 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit J4N39_10595 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit J4N39_10600 PF00285 Citrate synthase, C-terminal domain J4N39_10605 PF01784 NIF3 (NGG1p interacting factor 3) J4N39_10615 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J4N39_10615 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J4N39_10615 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J4N39_10615 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J4N39_10620 PF17206 SeqA protein N-terminal domain J4N39_10620 PF03925 SeqA protein C-terminal domain J4N39_10625 PF12697 Alpha/beta hydrolase family J4N39_10635 PF00258 Flavodoxin J4N39_10645 PF01475 Ferric uptake regulator family J4N39_10650 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain J4N39_10650 PF00749 tRNA synthetases class I (E and Q), catalytic domain J4N39_10655 PF00367 phosphotransferase system, EIIB J4N39_10655 PF02378 Phosphotransferase system, EIIC J4N39_10660 PF01979 Amidohydrolase family J4N39_10665 PF01047 MarR family J4N39_10665 PF00480 ROK family J4N39_10670 PF00999 Sodium/hydrogen exchanger family J4N39_10675 PF00733 Asparagine synthase J4N39_10675 PF13537 Glutamine amidotransferase domain J4N39_10680 PF02357 Transcription termination factor nusG J4N39_10685 PF00854 POT family J4N39_10690 PF00762 Ferrochelatase J4N39_10695 PF05191 Adenylate kinase, active site lid J4N39_10700 PF00183 Hsp90 protein J4N39_10705 PF00486 Transcriptional regulatory protein, C terminal J4N39_10710 PF17323 Trans-membrane regulatory protein ToxS J4N39_10725 PF12850 Calcineurin-like phosphoesterase superfamily domain J4N39_10740 PF07556 Protein of unknown function (DUF1538) J4N39_10745 PF07556 Protein of unknown function (DUF1538) J4N39_10750 PF01370 NAD dependent epimerase/dehydratase family J4N39_10750 PF08338 Domain of unknown function (DUF1731) J4N39_10755 PF00106 short chain dehydrogenase J4N39_10760 PF00085 Thioredoxin J4N39_10765 PF16200 C-terminal region of band_7 J4N39_10765 PF01145 SPFH domain / Band 7 family J4N39_10775 PF13411 MerR HTH family regulatory protein J4N39_10790 PF03573 outer membrane porin, OprD family J4N39_10795 PF01653 NAD-dependent DNA ligase adenylation domain J4N39_10795 PF03120 NAD-dependent DNA ligase OB-fold domain J4N39_10795 PF03119 NAD-dependent DNA ligase C4 zinc finger domain J4N39_10795 PF12826 Helix-hairpin-helix motif J4N39_10795 PF00533 BRCA1 C Terminus (BRCT) domain J4N39_10800 PF04354 ZipA, C-terminal FtsZ-binding domain J4N39_10810 PF00291 Pyridoxal-phosphate dependent enzyme J4N39_10815 PF00381 PTS HPr component phosphorylation site J4N39_10820 PF02896 PEP-utilising enzyme, TIM barrel domain J4N39_10820 PF05524 PEP-utilising enzyme, N-terminal J4N39_10820 PF00391 PEP-utilising enzyme, mobile domain J4N39_10825 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 J4N39_10830 PF13542 Helix-turn-helix domain of transposase family ISL3 J4N39_10830 PF01610 Transposase J4N39_10830 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 J4N39_10840 PF10549 ORF11CD3 domain J4N39_10840 PF09669 Phage regulatory protein Rha (Phage_pRha) J4N39_10850 PF13358 DDE superfamily endonuclease J4N39_10860 PF07196 Flagellin hook IN motif J4N39_10860 PF00669 Bacterial flagellin N-terminal helical region J4N39_10860 PF00700 Bacterial flagellin C-terminal helical region J4N39_10870 PF07196 Flagellin hook IN motif J4N39_10870 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N39_10875 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase J4N39_10875 PF10135 Rod binding protein J4N39_10880 PF02119 Flagellar P-ring protein J4N39_10885 PF02107 Flagellar L-ring protein J4N39_10890 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N39_10890 PF00460 Flagella basal body rod protein J4N39_10895 PF00460 Flagella basal body rod protein J4N39_10895 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N39_10900 PF07559 Flagellar basal body protein FlaE J4N39_10900 PF00460 Flagella basal body rod protein J4N39_10900 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N39_10905 PF03963 Flagellar hook capping protein - N-terminal region J4N39_10905 PF13861 FlgD Tudor-like domain J4N39_10905 PF13860 FlgD Ig-like domain J4N39_10910 PF00460 Flagella basal body rod protein J4N39_10910 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N39_10915 PF00460 Flagella basal body rod protein J4N39_10920 PF03705 CheR methyltransferase, all-alpha domain J4N39_10920 PF01739 CheR methyltransferase, SAM binding domain J4N39_10925 PF00072 Response regulator receiver domain J4N39_10925 PF01584 CheW-like domain J4N39_10970 PF17158 Membrane-associated sensor, integral membrane domain J4N39_10970 PF00990 Diguanylate cyclase, GGDEF domain J4N39_10985 PF17200 Single Cache domain 2 J4N39_10985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_10985 PF00672 HAMP domain J4N39_10990 PF00005 ABC transporter J4N39_10990 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N39_10995 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N39_10995 PF00005 ABC transporter J4N39_11005 PF00749 tRNA synthetases class I (E and Q), catalytic domain J4N39_11010 PF00403 Heavy-metal-associated domain J4N39_11030 PF00849 RNA pseudouridylate synthase J4N39_11030 PF01479 S4 domain J4N39_11035 PF01713 Smr domain J4N39_11050 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J4N39_11055 PF04073 Aminoacyl-tRNA editing domain J4N39_11060 PF00149 Calcineurin-like phosphoesterase J4N39_11060 PF02872 5'-nucleotidase, C-terminal domain J4N39_11065 PF02743 Cache domain J4N39_11065 PF00672 HAMP domain J4N39_11065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_11070 PF00793 DAHP synthetase I family J4N39_11075 PF13369 Transglutaminase-like superfamily J4N39_11080 PF04247 Invasion gene expression up-regulator, SirB J4N39_11085 PF13847 Methyltransferase domain J4N39_11085 PF17827 PrmC N-terminal domain J4N39_11090 PF03462 PCRF domain J4N39_11090 PF00472 RF-1 domain J4N39_11095 PF01488 Shikimate / quinate 5-dehydrogenase J4N39_11095 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain J4N39_11095 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain J4N39_11100 PF03550 Outer membrane lipoprotein LolB J4N39_11105 PF08544 GHMP kinases C terminal J4N39_11105 PF00288 GHMP kinases N terminal domain J4N39_11110 PF14572 Phosphoribosyl synthetase-associated domain J4N39_11110 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase J4N39_11115 PF03553 Na+/H+ antiporter family J4N39_11120 PF01195 Peptidyl-tRNA hydrolase J4N39_11125 PF06071 Protein of unknown function (DUF933) J4N39_11125 PF01926 50S ribosome-binding GTPase J4N39_11230 PF01494 FAD binding domain J4N39_11235 PF00919 Uncharacterized protein family UPF0004 J4N39_11235 PF01938 TRAM domain J4N39_11235 PF04055 Radical SAM superfamily J4N39_11240 PF02562 PhoH-like protein J4N39_11245 PF02130 Uncharacterized protein family UPF0054 J4N39_11250 PF00571 CBS domain J4N39_11250 PF03471 Transporter associated domain J4N39_11255 PF00795 Carbon-nitrogen hydrolase J4N39_11260 PF07295 Zinc-ribbon containing domain J4N39_11265 PF00133 tRNA synthetases class I (I, L, M and V) J4N39_11265 PF08264 Anticodon-binding domain of tRNA J4N39_11265 PF13603 Leucyl-tRNA synthetase, Domain 2 J4N39_11270 PF04390 Lipopolysaccharide-assembly J4N39_11275 PF06144 DNA polymerase III, delta subunit J4N39_11275 PF14840 Processivity clamp loader gamma complex DNA pol III C-term J4N39_11285 PF02590 Predicted SPOUT methyltransferase J4N39_11290 PF00905 Penicillin binding protein transpeptidase domain J4N39_11290 PF03717 Penicillin-binding Protein dimerisation domain J4N39_11295 PF01098 Cell cycle protein J4N39_11300 PF03330 Lytic transglycolase J4N39_11300 PF05036 Sporulation related domain J4N39_11305 PF07943 Penicillin-binding protein 5, C-terminal domain J4N39_11305 PF00768 D-alanyl-D-alanine carboxypeptidase J4N39_11310 PF04359 Protein of unknown function (DUF493) J4N39_11315 PF03099 Biotin/lipoate A/B protein ligase family J4N39_11320 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family J4N39_11320 PF04055 Radical SAM superfamily J4N39_11340 PF00464 Serine hydroxymethyltransferase J4N39_11350 PF16657 Maltogenic Amylase, C-terminal domain J4N39_11350 PF00128 Alpha amylase, catalytic domain J4N39_11355 PF00367 phosphotransferase system, EIIB J4N39_11355 PF02378 Phosphotransferase system, EIIC J4N39_11360 PF00356 Bacterial regulatory proteins, lacI family J4N39_11375 PF00005 ABC transporter J4N39_11375 PF09383 NIL domain J4N39_11380 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_11385 PF03180 NLPA lipoprotein J4N39_11395 PF01979 Amidohydrolase family J4N39_11400 PF01037 Lrp/AsnC ligand binding domain J4N39_11405 PF01810 LysE type translocator J4N39_11410 PF03806 AbgT putative transporter family J4N39_11415 PF00444 Ribosomal protein L36 J4N39_11420 PF01197 Ribosomal protein L31 J4N39_11425 PF01980 tRNA-methyltransferase O J4N39_11425 PF18389 TrmO C-terminal domain J4N39_11430 PF03129 Anticodon binding domain J4N39_11430 PF04073 Aminoacyl-tRNA editing domain J4N39_11430 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J4N39_11435 PF06786 Uncharacterised protein family (UPF0253) J4N39_11445 PF00990 Diguanylate cyclase, GGDEF domain J4N39_11445 PF03707 Bacterial signalling protein N terminal repeat J4N39_11445 PF00563 EAL domain J4N39_11450 PF00209 Sodium:neurotransmitter symporter family J4N39_11460 PF01272 Transcription elongation factor, GreA/GreB, C-term J4N39_11460 PF03449 Transcription elongation factor, N-terminal J4N39_11465 PF00817 impB/mucB/samB family J4N39_11465 PF11799 impB/mucB/samB family C-terminal domain J4N39_11465 PF11798 IMS family HHH motif J4N39_11470 PF00072 Response regulator receiver domain J4N39_11470 PF00990 Diguanylate cyclase, GGDEF domain J4N39_11480 PF02424 ApbE family J4N39_11485 PF00175 Oxidoreductase NAD-binding domain J4N39_11485 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N39_11485 PF00970 Oxidoreductase FAD-binding domain J4N39_11490 PF02508 Rnf-Nqr subunit, membrane protein J4N39_11495 PF02508 Rnf-Nqr subunit, membrane protein J4N39_11500 PF04205 FMN-binding domain J4N39_11505 PF03116 NQR2, RnfD, RnfE family J4N39_11510 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) J4N39_11510 PF11973 NQRA C-terminal domain J4N39_11515 PF01722 BolA-like protein J4N39_11520 PF05175 Methyltransferase small domain J4N39_11530 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J4N39_11535 PF07690 Major Facilitator Superfamily J4N39_11540 PF03502 Nucleoside-specific channel-forming protein, Tsx J4N39_11545 PF02558 Ketopantoate reductase PanE/ApbA J4N39_11545 PF08546 Ketopantoate reductase PanE/ApbA C terminal J4N39_11550 PF01965 DJ-1/PfpI family J4N39_11555 PF00266 Aminotransferase class-V J4N39_11560 PF02657 Fe-S metabolism associated domain J4N39_11565 PF00899 ThiF family J4N39_11570 PF06725 3D domain J4N39_11570 PF03562 MltA specific insert domain J4N39_11580 PF00696 Amino acid kinase family J4N39_11580 PF00583 Acetyltransferase (GNAT) family J4N39_11590 PF13538 UvrD-like helicase C-terminal domain J4N39_11595 PF13361 UvrD-like helicase C-terminal domain J4N39_11595 PF12705 PD-(D/E)XK nuclease superfamily J4N39_11595 PF00580 UvrD/REP helicase N-terminal domain J4N39_11600 PF17946 RecC C-terminal domain J4N39_11605 PF03466 LysR substrate binding domain J4N39_11605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_11610 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 J4N39_11615 PF07130 YebG protein J4N39_11620 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle J4N39_11620 PF14602 Hexapeptide repeat of succinyl-transferase J4N39_11635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_11635 PF03466 LysR substrate binding domain J4N39_11640 PF02417 Chromate transporter J4N39_11645 PF11849 Domain of unknown function (DUF3369) J4N39_11685 PF00437 Type II/IV secretion system protein J4N39_11700 PF04972 BON domain J4N39_11700 PF00263 Bacterial type II and III secretion system protein J4N39_11700 PF13629 Pilus formation protein N terminal region J4N39_11720 PF00501 AMP-binding enzyme J4N39_11730 PF03466 LysR substrate binding domain J4N39_11730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_11735 PF00679 Elongation factor G C-terminus J4N39_11735 PF00009 Elongation factor Tu GTP binding domain J4N39_11735 PF14492 Elongation Factor G, domain II J4N39_11735 PF03764 Elongation factor G, domain IV J4N39_11735 PF03144 Elongation factor Tu domain 2 J4N39_11745 PF18073 Rubredoxin metal binding domain J4N39_11755 PF18429 Domain of unknown function (DUF5609) J4N39_11765 PF01048 Phosphorylase superfamily J4N39_11770 PF01676 Metalloenzyme superfamily J4N39_11775 PF02885 Glycosyl transferase family, helical bundle domain J4N39_11775 PF00591 Glycosyl transferase family, a/b domain J4N39_11775 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain J4N39_11780 PF01791 DeoC/LacD family aldolase J4N39_11790 PF01773 Na+ dependent nucleoside transporter N-terminus J4N39_11790 PF07662 Na+ dependent nucleoside transporter C-terminus J4N39_11790 PF07670 Nucleoside recognition J4N39_11795 PF01026 TatD related DNase J4N39_11800 PF02608 ABC transporter substrate-binding protein PnrA-like J4N39_11805 PF00005 ABC transporter J4N39_11810 PF02653 Branched-chain amino acid transport system / permease component J4N39_11815 PF02653 Branched-chain amino acid transport system / permease component J4N39_11820 PF16658 Class II release factor RF3, C-terminal domain J4N39_11820 PF00009 Elongation factor Tu GTP binding domain J4N39_11820 PF03144 Elongation factor Tu domain 2 J4N39_11825 PF00583 Acetyltransferase (GNAT) family J4N39_11835 PF13508 Acetyltransferase (GNAT) domain J4N39_11840 PF02036 SCP-2 sterol transfer family J4N39_11845 PF00563 EAL domain J4N39_11845 PF03707 Bacterial signalling protein N terminal repeat J4N39_11845 PF00990 Diguanylate cyclase, GGDEF domain J4N39_11850 PF01136 Peptidase family U32 J4N39_11855 PF01136 Peptidase family U32 J4N39_11860 PF01554 MatE J4N39_11865 PF07719 Tetratricopeptide repeat J4N39_11865 PF13181 Tetratricopeptide repeat J4N39_11870 PF00013 KH domain J4N39_11870 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain J4N39_11870 PF01138 3' exoribonuclease family, domain 1 J4N39_11870 PF03725 3' exoribonuclease family, domain 2 J4N39_11870 PF00575 S1 RNA binding domain J4N39_11875 PF00312 Ribosomal protein S15 J4N39_11880 PF16198 tRNA pseudouridylate synthase B C-terminal domain J4N39_11880 PF01509 TruB family pseudouridylate synthase (N terminal domain) J4N39_11880 PF09157 Pseudouridine synthase II TruB, C-terminal J4N39_11885 PF02033 Ribosome-binding factor A J4N39_11890 PF00009 Elongation factor Tu GTP binding domain J4N39_11890 PF11987 Translation-initiation factor 2 J4N39_11890 PF08364 Bacterial translation initiation factor IF-2 associated region J4N39_11890 PF04760 Translation initiation factor IF-2, N-terminal region J4N39_11895 PF00575 S1 RNA binding domain J4N39_11895 PF13184 NusA-like KH domain J4N39_11895 PF08529 NusA N-terminal domain J4N39_11900 PF17384 RimP C-terminal SH3 domain J4N39_11900 PF02576 RimP N-terminal domain J4N39_11915 PF03840 Preprotein translocase SecG subunit J4N39_11920 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J4N39_11920 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J4N39_11920 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J4N39_11920 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J4N39_11925 PF00809 Pterin binding enzyme J4N39_11930 PF01434 Peptidase family M41 J4N39_11930 PF06480 FtsH Extracellular J4N39_11930 PF17862 AAA+ lid domain J4N39_11930 PF00004 ATPase family associated with various cellular activities (AAA) J4N39_11935 PF01728 FtsJ-like methyltransferase J4N39_11940 PF01985 CRS1 / YhbY (CRM) domain J4N39_11945 PF03449 Transcription elongation factor, N-terminal J4N39_11945 PF01272 Transcription elongation factor, GreA/GreB, C-term J4N39_11950 PF13609 Gram-negative porin J4N39_11955 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family J4N39_11965 PF01479 S4 domain J4N39_11965 PF00579 tRNA synthetases class I (W and Y) J4N39_11970 PF01476 LysM domain J4N39_11970 PF01551 Peptidase family M23 J4N39_11970 PF08525 Opacity-associated protein A N-terminal motif J4N39_11980 PF00873 AcrB/AcrD/AcrF family J4N39_11990 PF01521 Iron-sulphur cluster biosynthesis J4N39_11995 PF00202 Aminotransferase class-III J4N39_12000 PF01594 AI-2E family transporter J4N39_12005 PF08468 Methyltransferase small domain N-terminal J4N39_12005 PF05175 Methyltransferase small domain J4N39_12010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_12010 PF00512 His Kinase A (phospho-acceptor) domain J4N39_12010 PF09308 LuxQ, periplasmic J4N39_12010 PF00072 Response regulator receiver domain J4N39_12015 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N39_12020 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_12025 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N39_12025 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_12030 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N39_12030 PF00005 ABC transporter J4N39_12035 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N39_12035 PF00005 ABC transporter J4N39_12045 PF01869 BadF/BadG/BcrA/BcrD ATPase family J4N39_12050 PF02838 Glycosyl hydrolase family 20, domain 2 J4N39_12050 PF00728 Glycosyl hydrolase family 20, catalytic domain J4N39_12055 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain J4N39_12055 PF06165 Glycosyltransferase family 36 J4N39_12060 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J4N39_12060 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J4N39_12060 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J4N39_12060 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J4N39_12065 PF00005 ABC transporter J4N39_12065 PF08402 TOBE domain J4N39_12070 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_12075 PF13416 Bacterial extracellular solute-binding protein J4N39_12080 PF00909 Ammonium Transporter Family J4N39_12085 PF00543 Nitrogen regulatory protein P-II J4N39_12090 PF06062 Uncharacterised protein family (UPF0231) J4N39_12095 PF11791 Aconitate B N-terminal domain J4N39_12095 PF06434 Aconitate hydratase 2 N-terminus J4N39_12095 PF00330 Aconitase family (aconitate hydratase) J4N39_12100 PF01734 Patatin-like phospholipase J4N39_12105 PF14814 Bifunctional transglycosylase second domain J4N39_12105 PF00912 Transglycosylase J4N39_12105 PF00905 Penicillin binding protein transpeptidase domain J4N39_12110 PF00270 DEAD/DEAH box helicase J4N39_12110 PF04408 Helicase associated domain (HA2) J4N39_12110 PF00271 Helicase conserved C-terminal domain J4N39_12110 PF08482 ATP-dependent helicase C-terminal J4N39_12115 PF03749 Sugar fermentation stimulation protein RE domain J4N39_12115 PF17746 SfsA N-terminal OB domain J4N39_12120 PF01258 Prokaryotic dksA/traR C4-type zinc finger J4N39_12125 PF00749 tRNA synthetases class I (E and Q), catalytic domain J4N39_12130 PF12627 Probable RNA and SrmB- binding site of polymerase A J4N39_12130 PF01743 Poly A polymerase head domain J4N39_12130 PF12626 Polymerase A arginine-rich C-terminus J4N39_12135 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J4N39_12140 PF02548 Ketopantoate hydroxymethyltransferase J4N39_12145 PF02569 Pantoate-beta-alanine ligase J4N39_12150 PF07238 PilZ domain J4N39_12155 PF04225 Opacity-associated protein A LysM-like domain J4N39_12155 PF01551 Peptidase family M23 J4N39_12160 PF01817 Chorismate mutase type II J4N39_12160 PF02153 Prephenate dehydrogenase J4N39_12165 PF00793 DAHP synthetase I family J4N39_12170 PF07694 5TMR of 5TMR-LYT J4N39_12170 PF06580 Histidine kinase J4N39_12175 PF00072 Response regulator receiver domain J4N39_12175 PF04397 LytTr DNA-binding domain J4N39_12180 PF02554 Carbon starvation protein CstA J4N39_12185 PF00933 Glycosyl hydrolase family 3 N terminal domain J4N39_12190 PF03702 Anhydro-N-acetylmuramic acid kinase J4N39_12195 PF13580 SIS domain J4N39_12200 PF00990 Diguanylate cyclase, GGDEF domain J4N39_12200 PF00563 EAL domain J4N39_12200 PF03707 Bacterial signalling protein N terminal repeat J4N39_12210 PF02401 LytB protein J4N39_12215 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N39_12220 PF01252 Signal peptidase (SPase) II J4N39_12225 PF00133 tRNA synthetases class I (I, L, M and V) J4N39_12225 PF06827 Zinc finger found in FPG and IleRS J4N39_12225 PF08264 Anticodon-binding domain of tRNA J4N39_12230 PF06574 FAD synthetase J4N39_12230 PF01687 Riboflavin kinase J4N39_12235 PF03023 Lipid II flippase MurJ J4N39_12240 PF01649 Ribosomal protein S20 J4N39_12245 PF01061 ABC-2 type transporter J4N39_12250 PF00005 ABC transporter J4N39_12255 PF01740 STAS domain J4N39_12255 PF00916 Sulfate permease family J4N39_12260 PF00484 Carbonic anhydrase J4N39_12265 PF00156 Phosphoribosyl transferase domain J4N39_12270 PF00440 Bacterial regulatory proteins, tetR family J4N39_12280 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4N39_12280 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N39_12285 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J4N39_12285 PF00364 Biotin-requiring enzyme J4N39_12285 PF02817 e3 binding domain J4N39_12290 PF17831 Pyruvate dehydrogenase E1 component middle domain J4N39_12290 PF00456 Transketolase, thiamine diphosphate binding domain J4N39_12295 PF07729 FCD domain J4N39_12295 PF00392 Bacterial regulatory proteins, gntR family J4N39_12300 PF01510 N-acetylmuramoyl-L-alanine amidase J4N39_12305 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain J4N39_12305 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain J4N39_12310 PF07963 Prokaryotic N-terminal methylation motif J4N39_12310 PF00114 Pilin (bacterial filament) J4N39_12315 PF00437 Type II/IV secretion system protein J4N39_12315 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J4N39_12320 PF00482 Type II secretion system (T2SS), protein F J4N39_12325 PF06750 Bacterial Peptidase A24 N-terminal domain J4N39_12325 PF01478 Type IV leader peptidase family J4N39_12330 PF01121 Dephospho-CoA kinase J4N39_12335 PF07072 Cell division protein J4N39_12340 PF03884 DNA gyrase inhibitor YacG J4N39_12345 PF00293 NUDIX domain J4N39_12350 PF07516 SecA Wing and Scaffold domain J4N39_12350 PF01043 SecA preprotein cross-linking domain J4N39_12350 PF02810 SEC-C motif J4N39_12350 PF07517 SecA DEAD-like domain J4N39_12355 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase J4N39_12360 PF12327 FtsZ family, C-terminal domain J4N39_12360 PF00091 Tubulin/FtsZ family, GTPase domain J4N39_12365 PF02491 SHS2 domain inserted in FTSA J4N39_12370 PF03799 Cell division protein FtsQ J4N39_12370 PF08478 POTRA domain, FtsQ-type J4N39_12375 PF01225 Mur ligase family, catalytic domain J4N39_12375 PF02875 Mur ligase family, glutamate ligase domain J4N39_12375 PF08245 Mur ligase middle domain J4N39_12380 PF03033 Glycosyltransferase family 28 N-terminal domain J4N39_12380 PF04101 Glycosyltransferase family 28 C-terminal domain J4N39_12385 PF01098 Cell cycle protein J4N39_12390 PF02875 Mur ligase family, glutamate ligase domain J4N39_12390 PF08245 Mur ligase middle domain J4N39_12395 PF00953 Glycosyl transferase family 4 J4N39_12395 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 J4N39_12400 PF01225 Mur ligase family, catalytic domain J4N39_12400 PF02875 Mur ligase family, glutamate ligase domain J4N39_12400 PF08245 Mur ligase middle domain J4N39_12405 PF08245 Mur ligase middle domain J4N39_12405 PF01225 Mur ligase family, catalytic domain J4N39_12405 PF02875 Mur ligase family, glutamate ligase domain J4N39_12410 PF03717 Penicillin-binding Protein dimerisation domain J4N39_12410 PF00905 Penicillin binding protein transpeptidase domain J4N39_12415 PF04999 Cell division protein FtsL J4N39_12420 PF01795 MraW methylase family J4N39_12430 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N39_12435 PF04348 LppC putative lipoprotein J4N39_12440 PF02021 Uncharacterised protein family UPF0102 J4N39_12445 PF13580 SIS domain J4N39_12450 PF04972 BON domain J4N39_12455 PF00303 Thymidylate synthase J4N39_12460 PF01790 Prolipoprotein diacylglyceryl transferase J4N39_12465 PF01925 Sulfite exporter TauE/SafE J4N39_12470 PF05524 PEP-utilising enzyme, N-terminal J4N39_12470 PF00391 PEP-utilising enzyme, mobile domain J4N39_12470 PF01590 GAF domain J4N39_12470 PF02896 PEP-utilising enzyme, TIM barrel domain J4N39_12475 PF00293 NUDIX domain J4N39_12480 PF02976 DNA mismatch repair enzyme MutH J4N39_12490 PF00248 Aldo/keto reductase family J4N39_12500 PF02954 Bacterial regulatory protein, Fis family J4N39_12500 PF00072 Response regulator receiver domain J4N39_12500 PF00158 Sigma-54 interaction domain J4N39_12505 PF04386 Stringent starvation protein B J4N39_12510 PF02798 Glutathione S-transferase, N-terminal domain J4N39_12510 PF00043 Glutathione S-transferase, C-terminal domain J4N39_12515 PF02167 Cytochrome C1 family J4N39_12520 PF00033 Cytochrome b/b6/petB J4N39_12520 PF00032 Cytochrome b(C-terminal)/b6/petD J4N39_12525 PF00355 Rieske [2Fe-2S] domain J4N39_12525 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal J4N39_12530 PF00380 Ribosomal protein S9/S16 J4N39_12535 PF00572 Ribosomal protein L13 J4N39_12540 PF03969 AFG1-like ATPase J4N39_12550 PF00595 PDZ domain J4N39_12555 PF13180 PDZ domain J4N39_12560 PF00521 DNA gyrase/topoisomerase IV, subunit A J4N39_12560 PF03989 DNA gyrase C-terminal domain, beta-propeller J4N39_12565 PF00204 DNA gyrase B J4N39_12565 PF00986 DNA gyrase B subunit, carboxyl terminus J4N39_12565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_12565 PF01751 Toprim domain J4N39_12570 PF05728 Uncharacterised protein family (UPF0227) J4N39_12575 PF00149 Calcineurin-like phosphoesterase J4N39_12580 PF06853 Protein of unknown function (DUF1249) J4N39_12585 PF00293 NUDIX domain J4N39_12590 PF02321 Outer membrane efflux protein J4N39_12600 PF00294 pfkB family carbohydrate kinase J4N39_12600 PF01467 Cytidylyltransferase-like J4N39_12605 PF08335 GlnD PII-uridylyltransferase J4N39_12605 PF03710 Glutamate-ammonia ligase adenylyltransferase J4N39_12610 PF02743 Cache domain J4N39_12610 PF00672 HAMP domain J4N39_12610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_12625 PF01928 CYTH domain J4N39_12630 PF01865 Protein of unknown function DUF47 J4N39_12635 PF01384 Phosphate transporter family J4N39_12640 PF08239 Bacterial SH3 domain J4N39_12650 PF13401 AAA domain J4N39_12650 PF01471 Putative peptidoglycan binding domain J4N39_12655 PF01966 HD domain J4N39_12655 PF01743 Poly A polymerase head domain J4N39_12655 PF12627 Probable RNA and SrmB- binding site of polymerase A J4N39_12660 PF02673 Bacitracin resistance protein BacA J4N39_12665 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J4N39_12670 PF02152 Dihydroneopterin aldolase J4N39_12675 PF02660 Glycerol-3-phosphate acyltransferase J4N39_12685 PF00814 Glycoprotease family J4N39_12690 PF01165 Ribosomal protein S21 J4N39_12695 PF09424 Yqey-like protein J4N39_12700 PF10410 DnaB-helicase binding domain of primase J4N39_12700 PF08278 DNA primase DnaG DnaB-binding J4N39_12700 PF08275 DNA primase catalytic core, N-terminal domain J4N39_12700 PF01807 CHC2 zinc finger J4N39_12705 PF04546 Sigma-70, non-essential region J4N39_12705 PF03979 Sigma-70 factor, region 1.1 J4N39_12705 PF00140 Sigma-70 factor, region 1.2 J4N39_12705 PF04542 Sigma-70 region 2 J4N39_12705 PF04539 Sigma-70 region 3 J4N39_12705 PF04545 Sigma-70, region 4 J4N39_12715 PF08787 Alginate lyase J4N39_12725 PF03480 Bacterial extracellular solute-binding protein, family 7 J4N39_12735 PF03601 Conserved hypothetical protein 698 J4N39_12740 PF00563 EAL domain J4N39_12740 PF00990 Diguanylate cyclase, GGDEF domain J4N39_12740 PF03707 Bacterial signalling protein N terminal repeat J4N39_12750 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase J4N39_12755 PF00224 Pyruvate kinase, barrel domain J4N39_12755 PF02887 Pyruvate kinase, alpha/beta domain J4N39_12765 PF00990 Diguanylate cyclase, GGDEF domain J4N39_12765 PF17158 Membrane-associated sensor, integral membrane domain J4N39_12770 PF10369 Small subunit of acetolactate synthase J4N39_12775 PF00205 Thiamine pyrophosphate enzyme, central domain J4N39_12775 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J4N39_12775 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J4N39_12780 PF00501 AMP-binding enzyme J4N39_12785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_12785 PF03466 LysR substrate binding domain J4N39_12795 PF01569 PAP2 superfamily J4N39_12800 PF00873 AcrB/AcrD/AcrF family J4N39_12815 PF00682 HMGL-like J4N39_12815 PF08502 LeuA allosteric (dimerisation) domain J4N39_12820 PF00180 Isocitrate/isopropylmalate dehydrogenase J4N39_12825 PF00330 Aconitase family (aconitate hydratase) J4N39_12830 PF00694 Aconitase C-terminal domain J4N39_12845 PF05099 Tellurite resistance protein TerB J4N39_12845 PF00226 DnaJ domain J4N39_12850 PF03968 OstA-like protein J4N39_12850 PF04453 LPS transport system D J4N39_12855 PF09312 SurA N-terminal domain J4N39_12860 PF04166 Pyridoxal phosphate biosynthetic protein PdxA J4N39_12865 PF00398 Ribosomal RNA adenine dimethylase J4N39_12870 PF04379 ApaG domain J4N39_12875 PF00149 Calcineurin-like phosphoesterase J4N39_12880 PF00186 Dihydrofolate reductase J4N39_12885 PF12821 Threonine/Serine exporter, ThrE J4N39_12890 PF06738 Putative threonine/serine exporter J4N39_12895 PF01018 GTP1/OBG J4N39_12895 PF01926 50S ribosome-binding GTPase J4N39_12900 PF01016 Ribosomal L27 protein J4N39_12905 PF00829 Ribosomal prokaryotic L21 protein J4N39_12910 PF00348 Polyprenyl synthetase J4N39_12915 PF00990 Diguanylate cyclase, GGDEF domain J4N39_12915 PF08448 PAS fold J4N39_12920 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain J4N39_12920 PF00056 lactate/malate dehydrogenase, NAD binding domain J4N39_12925 PF01316 Arginine repressor, DNA binding domain J4N39_12925 PF02863 Arginine repressor, C-terminal domain J4N39_12930 PF16868 NMT1-like family J4N39_12945 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J4N39_12945 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N39_12950 PF00849 RNA pseudouridylate synthase J4N39_12955 PF00271 Helicase conserved C-terminal domain J4N39_12955 PF12137 RNA polymerase recycling family C-terminal J4N39_12955 PF00176 SNF2 family N-terminal domain J4N39_12955 PF18339 RapA N-terminal Tudor like domain 1 J4N39_12955 PF18337 RapA N-terminal Tudor like domain J4N39_12960 PF02562 PhoH-like protein J4N39_12960 PF13638 PIN domain J4N39_12965 PF00005 ABC transporter J4N39_12970 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_12980 PF02441 Flavoprotein J4N39_12985 PF01225 Mur ligase family, catalytic domain J4N39_12985 PF02875 Mur ligase family, glutamate ligase domain J4N39_12985 PF08245 Mur ligase middle domain J4N39_12990 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain J4N39_12995 PF00719 Inorganic pyrophosphatase J4N39_13000 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like J4N39_13005 PF04357 TamB, inner membrane protein subunit of TAM complex J4N39_13010 PF01103 Surface antigen J4N39_13010 PF07244 Surface antigen variable number repeat J4N39_13010 PF17243 POTRA domain TamA domain 1 J4N39_13015 PF01625 Peptide methionine sulfoxide reductase J4N39_13020 PF06526 Protein of unknown function (DUF1107) J4N39_13025 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) J4N39_13030 PF01042 Endoribonuclease L-PSP J4N39_13035 PF01553 Acyltransferase J4N39_13040 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J4N39_13045 PF01722 BolA-like protein J4N39_13055 PF05494 MlaC protein J4N39_13065 PF02405 Permease MlaE J4N39_13070 PF00005 ABC transporter J4N39_13075 PF01699 Sodium/calcium exchanger protein J4N39_13080 PF01380 SIS domain J4N39_13080 PF00571 CBS domain J4N39_13095 PF03968 OstA-like protein J4N39_13100 PF00005 ABC transporter J4N39_13100 PF12399 Branched-chain amino acid ATP-binding cassette transporter J4N39_13105 PF00309 Sigma-54 factor, Activator interacting domain (AID) J4N39_13105 PF04963 Sigma-54 factor, core binding domain J4N39_13105 PF04552 Sigma-54, DNA binding domain J4N39_13110 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein J4N39_13115 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N39_13120 PF03668 P-loop ATPase protein family J4N39_13125 PF00381 PTS HPr component phosphorylation site J4N39_13130 PF00571 CBS domain J4N39_13130 PF01769 Divalent cation transporter J4N39_13130 PF03448 MgtE intracellular N domain J4N39_13135 PF01523 Putative modulator of DNA gyrase J4N39_13140 PF04751 Protein of unknown function (DUF615) J4N39_13145 PF01523 Putative modulator of DNA gyrase J4N39_13150 PF00795 Carbon-nitrogen hydrolase J4N39_13160 PF10150 Ribonuclease E/G family J4N39_13160 PF00575 S1 RNA binding domain J4N39_13165 PF02545 Maf-like protein J4N39_13170 PF04093 rod shape-determining protein MreD J4N39_13175 PF04085 rod shape-determining protein MreC J4N39_13215 PF07963 Prokaryotic N-terminal methylation motif J4N39_13215 PF00114 Pilin (bacterial filament) J4N39_13220 PF07963 Prokaryotic N-terminal methylation motif J4N39_13230 PF00482 Type II secretion system (T2SS), protein F J4N39_13235 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J4N39_13235 PF00437 Type II/IV secretion system protein J4N39_13245 PF13401 AAA domain J4N39_13245 PF01471 Putative peptidoglycan binding domain J4N39_13250 PF07660 Secretin and TonB N terminus short domain J4N39_13250 PF03958 Bacterial type II/III secretion system short domain J4N39_13250 PF00263 Bacterial type II and III secretion system protein J4N39_13250 PF11741 AMIN domain J4N39_13270 PF17157 Gammaproteobacterial periplasmic sensor domain J4N39_13270 PF00990 Diguanylate cyclase, GGDEF domain J4N39_13270 PF00563 EAL domain J4N39_13275 PF00436 Single-strand binding protein family J4N39_13280 PF00196 Bacterial regulatory proteins, luxR family J4N39_13290 PF00483 Nucleotidyl transferase J4N39_13295 PF17760 UvrA interaction domain J4N39_13295 PF17755 UvrA DNA-binding domain J4N39_13295 PF00005 ABC transporter J4N39_13305 PF00266 Aminotransferase class-V J4N39_13310 PF01842 ACT domain J4N39_13310 PF00696 Amino acid kinase family J4N39_13315 PF02574 Homocysteine S-methyltransferase J4N39_13315 PF00809 Pterin binding enzyme J4N39_13315 PF02607 B12 binding domain J4N39_13315 PF02310 B12 binding domain J4N39_13315 PF02965 Vitamin B12 dependent methionine synthase, activation domain J4N39_13320 PF04204 Homoserine O-succinyltransferase J4N39_13365 PF01507 Phosphoadenosine phosphosulfate reductase family J4N39_13370 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain J4N39_13370 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J4N39_13375 PF00667 FAD binding domain J4N39_13375 PF00258 Flavodoxin J4N39_13375 PF00175 Oxidoreductase NAD-binding domain J4N39_13395 PF01207 Dihydrouridine synthase (Dus) J4N39_13400 PF01475 Ferric uptake regulator family J4N39_13410 PF00342 Phosphoglucose isomerase J4N39_13415 PF01894 Uncharacterised protein family UPF0047 J4N39_13425 PF00842 Alanine racemase, C-terminal domain J4N39_13425 PF01168 Alanine racemase, N-terminal domain J4N39_13430 PF03796 DnaB-like helicase C terminal domain J4N39_13430 PF00772 DnaB-like helicase N terminal domain J4N39_13440 PF00116 Cytochrome C oxidase subunit II, periplasmic domain J4N39_13440 PF02790 Cytochrome C oxidase subunit II, transmembrane domain J4N39_13445 PF00115 Cytochrome C and Quinol oxidase polypeptide I J4N39_13450 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 J4N39_13455 PF00510 Cytochrome c oxidase subunit III J4N39_13475 PF02628 Cytochrome oxidase assembly protein J4N39_13480 PF01040 UbiA prenyltransferase family J4N39_13485 PF03948 Ribosomal protein L9, C-terminal domain J4N39_13485 PF01281 Ribosomal protein L9, N-terminal domain J4N39_13490 PF01084 Ribosomal protein S18 J4N39_13495 PF01250 Ribosomal protein S6 J4N39_13500 PF00588 SpoU rRNA Methylase family J4N39_13500 PF08032 RNA 2'-O ribose methyltransferase substrate binding J4N39_13505 PF00773 RNB domain J4N39_13505 PF00575 S1 RNA binding domain J4N39_13505 PF08461 Ribonuclease R winged-helix domain J4N39_13505 PF17876 Cold shock domain J4N39_13505 PF08206 Ribonuclease B OB domain J4N39_13510 PF02082 Transcriptional regulator J4N39_13515 PF00970 Oxidoreductase FAD-binding domain J4N39_13515 PF00042 Globin J4N39_13515 PF00175 Oxidoreductase NAD-binding domain J4N39_13520 PF08238 Sel1 repeat J4N39_13525 PF00709 Adenylosuccinate synthetase J4N39_13535 PF01145 SPFH domain / Band 7 family J4N39_13540 PF12221 Bacterial membrane protein N terminal J4N39_13540 PF01145 SPFH domain / Band 7 family J4N39_13545 PF16360 GTP-binding GTPase Middle Region J4N39_13545 PF01926 50S ribosome-binding GTPase J4N39_13545 PF13167 GTP-binding GTPase N-terminal J4N39_13550 PF17209 Hfq protein J4N39_13560 PF01119 DNA mismatch repair protein, C-terminal domain J4N39_13560 PF08676 MutL C terminal dimerisation domain J4N39_13565 PF01520 N-acetylmuramoyl-L-alanine amidase J4N39_13570 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE J4N39_13575 PF08331 Domain of unknown function (DUF1730) J4N39_13630 PF00929 Exonuclease J4N39_13635 PF03193 RsgA GTPase J4N39_13640 PF02666 Phosphatidylserine decarboxylase J4N39_13645 PF00939 Sodium:sulfate symporter transmembrane region J4N39_13655 PF00152 tRNA synthetases class II (D, K and N) J4N39_13660 PF00890 FAD binding domain J4N39_13660 PF02910 Fumarate reductase flavoprotein C-term J4N39_13665 PF13085 2Fe-2S iron-sulfur cluster binding domain J4N39_13665 PF13183 4Fe-4S dicluster domain J4N39_13670 PF02300 Fumarate reductase subunit C J4N39_13675 PF02313 Fumarate reductase subunit D J4N39_13685 PF09285 Elongation factor P, C-terminal J4N39_13685 PF01132 Elongation factor P (EF-P) OB domain J4N39_13685 PF08207 Elongation factor P (EF-P) KOW-like domain J4N39_13690 PF04055 Radical SAM superfamily J4N39_13710 PF00118 TCP-1/cpn60 chaperonin family J4N39_13715 PF00166 Chaperonin 10 Kd subunit J4N39_13720 PF01554 MatE J4N39_13725 PF01909 Nucleotidyltransferase domain J4N39_13735 PF00132 Bacterial transferase hexapeptide (six repeats) J4N39_13735 PF06426 Serine acetyltransferase, N-terminal J4N39_13740 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus J4N39_13740 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus J4N39_13745 PF02556 Preprotein translocase subunit SecB J4N39_13750 PF00581 Rhodanese-like domain J4N39_13755 PF06415 BPG-independent PGAM N-terminus (iPGM_N) J4N39_13755 PF01676 Metalloenzyme superfamily J4N39_13760 PF01551 Peptidase family M23 J4N39_13765 PF00953 Glycosyl transferase family 4 J4N39_13770 PF01609 Transposase DDE domain J4N39_13770 PF13808 DDE_Tnp_1-associated J4N39_13780 PF00953 Glycosyl transferase family 4 J4N39_13810 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J4N39_13810 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J4N39_13810 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J4N39_13860 PF00977 Histidine biosynthesis protein J4N39_13865 PF00117 Glutamine amidotransferase class-I J4N39_13875 PF01467 Cytidylyltransferase-like J4N39_13875 PF00294 pfkB family carbohydrate kinase J4N39_13880 PF00733 Asparagine synthase J4N39_13880 PF13537 Glutamine amidotransferase domain J4N39_13885 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J4N39_13890 PF12804 MobA-like NTP transferase domain J4N39_13890 PF00132 Bacterial transferase hexapeptide (six repeats) J4N39_13890 PF14602 Hexapeptide repeat of succinyl-transferase J4N39_13895 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J4N39_13895 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J4N39_13905 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase J4N39_13910 PF04321 RmlD substrate binding domain J4N39_13915 PF00483 Nucleotidyl transferase J4N39_13920 PF16363 GDP-mannose 4,6 dehydratase J4N39_13925 PF13807 G-rich domain on putative tyrosine kinase J4N39_13925 PF13614 AAA domain J4N39_13925 PF02706 Chain length determinant protein J4N39_13930 PF01451 Low molecular weight phosphotyrosine protein phosphatase J4N39_13935 PF18412 Outer-membrane lipoprotein Wza C-terminal domain J4N39_13935 PF02563 Polysaccharide biosynthesis/export protein J4N39_13935 PF10531 SLBB domain J4N39_13940 PF00753 Metallo-beta-lactamase superfamily J4N39_13940 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain J4N39_13940 PF10996 Beta-Casp domain J4N39_13945 PF08360 QacR-like protein, C-terminal region J4N39_13945 PF00440 Bacterial regulatory proteins, tetR family J4N39_13965 PF06082 Exopolysaccharide biosynthesis protein YbjH J4N39_13970 PF01370 NAD dependent epimerase/dehydratase family J4N39_13980 PF01075 Glycosyltransferase family 9 (heptosyltransferase) J4N39_13985 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) J4N39_13990 PF01075 Glycosyltransferase family 9 (heptosyltransferase) J4N39_13995 PF00535 Glycosyl transferase family 2 J4N39_14000 PF01075 Glycosyltransferase family 9 (heptosyltransferase) J4N39_14005 PF01467 Cytidylyltransferase-like J4N39_14010 PF00884 Sulfatase J4N39_14015 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain J4N39_14015 PF06827 Zinc finger found in FPG and IleRS J4N39_14015 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain J4N39_14025 PF00471 Ribosomal protein L33 J4N39_14030 PF00830 Ribosomal L28 family J4N39_14040 PF04002 RadC-like JAB domain J4N39_14045 PF04127 DNA / pantothenate metabolism flavoprotein J4N39_14045 PF02441 Flavoprotein J4N39_14050 PF00440 Bacterial regulatory proteins, tetR family J4N39_14060 PF03279 Bacterial lipid A biosynthesis acyltransferase J4N39_14080 PF00156 Phosphoribosyl transferase domain J4N39_14085 PF03725 3' exoribonuclease family, domain 2 J4N39_14085 PF01138 3' exoribonuclease family, domain 1 J4N39_14090 PF08340 Domain of unknown function (DUF1732) J4N39_14090 PF03755 YicC-like family, N-terminal region J4N39_14105 PF00625 Guanylate kinase J4N39_14110 PF01192 RNA polymerase Rpb6 J4N39_14115 PF13291 ACT domain J4N39_14115 PF04607 Region found in RelA / SpoT proteins J4N39_14115 PF02824 TGS domain J4N39_14120 PF12105 SpoU, rRNA methylase, C-terminal J4N39_14120 PF00588 SpoU rRNA Methylase family J4N39_14125 PF00271 Helicase conserved C-terminal domain J4N39_14125 PF17191 RecG wedge domain J4N39_14125 PF00270 DEAD/DEAH box helicase J4N39_14130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_14130 PF00672 HAMP domain J4N39_14130 PF00512 His Kinase A (phospho-acceptor) domain J4N39_14135 PF00486 Transcriptional regulatory protein, C terminal J4N39_14135 PF00072 Response regulator receiver domain J4N39_14140 PF03449 Transcription elongation factor, N-terminal J4N39_14140 PF01272 Transcription elongation factor, GreA/GreB, C-term J4N39_14150 PF09371 Tex-like protein N-terminal domain J4N39_14150 PF00575 S1 RNA binding domain J4N39_14150 PF17674 HHH domain J4N39_14150 PF16921 Tex protein YqgF-like domain J4N39_14155 PF00534 Glycosyl transferases group 1 J4N39_14170 PF00561 alpha/beta hydrolase fold J4N39_14175 PF00156 Phosphoribosyl transferase domain J4N39_14180 PF01521 Iron-sulphur cluster biosynthesis J4N39_14180 PF01106 NifU-like domain J4N39_14185 PF00459 Inositol monophosphatase family J4N39_14190 PF00293 NUDIX domain J4N39_14195 PF01203 Type II secretion system (T2SS), protein N J4N39_14200 PF04612 Type II secretion system (T2SS), protein M J4N39_14205 PF05134 Type II secretion system (T2SS), protein L J4N39_14205 PF12693 GspL periplasmic domain J4N39_14210 PF03934 Type II secretion system (T2SS), protein K J4N39_14215 PF07963 Prokaryotic N-terminal methylation motif J4N39_14215 PF11612 Type II secretion system (T2SS), protein J J4N39_14220 PF07963 Prokaryotic N-terminal methylation motif J4N39_14220 PF02501 Type II secretion system (T2SS), protein I J4N39_14225 PF12019 Type II transport protein GspH J4N39_14230 PF07963 Prokaryotic N-terminal methylation motif J4N39_14230 PF08334 Type II secretion system (T2SS), protein G J4N39_14235 PF00482 Type II secretion system (T2SS), protein F J4N39_14240 PF00437 Type II/IV secretion system protein J4N39_14245 PF03958 Bacterial type II/III secretion system short domain J4N39_14245 PF00263 Bacterial type II and III secretion system protein J4N39_14250 PF11356 Type II secretion system protein C J4N39_14255 PF01479 S4 domain J4N39_14260 PF01430 Hsp33 protein J4N39_14265 PF01293 Phosphoenolpyruvate carboxykinase J4N39_14275 PF00583 Acetyltransferase (GNAT) family J4N39_14275 PF09500 Putative thioesterase (yiiD_Cterm) J4N39_14280 PF02580 D-Tyr-tRNA(Tyr) deacylase J4N39_14285 PF03631 Virulence factor BrkB J4N39_14300 PF00679 Elongation factor G C-terminus J4N39_14300 PF03144 Elongation factor Tu domain 2 J4N39_14300 PF00009 Elongation factor Tu GTP binding domain J4N39_14305 PF00120 Glutamine synthetase, catalytic domain J4N39_14305 PF03951 Glutamine synthetase, beta-Grasp domain J4N39_14315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_14315 PF00512 His Kinase A (phospho-acceptor) domain J4N39_14315 PF00989 PAS fold J4N39_14320 PF02954 Bacterial regulatory protein, Fis family J4N39_14320 PF00072 Response regulator receiver domain J4N39_14320 PF00158 Sigma-54 interaction domain J4N39_14325 PF00563 EAL domain J4N39_14325 PF00990 Diguanylate cyclase, GGDEF domain J4N39_14325 PF03707 Bacterial signalling protein N terminal repeat J4N39_14330 PF00962 Adenosine/AMP deaminase J4N39_14335 PF04055 Radical SAM superfamily J4N39_14335 PF06969 HemN C-terminal domain J4N39_14345 PF04220 Der GTPase activator (YihI) J4N39_14355 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J4N39_14360 PF01926 50S ribosome-binding GTPase J4N39_14365 PF01612 3'-5' exonuclease J4N39_14365 PF00476 DNA polymerase family A J4N39_14365 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J4N39_14365 PF01367 5'-3' exonuclease, C-terminal SAM fold J4N39_14375 PF00490 Delta-aminolevulinic acid dehydratase J4N39_14380 PF01026 TatD related DNase J4N39_14385 PF00902 Sec-independent protein translocase protein (TatC) J4N39_14390 PF02416 mttA/Hcf106 family J4N39_14395 PF02416 mttA/Hcf106 family J4N39_14400 PF03109 ABC1 family J4N39_14405 PF02036 SCP-2 sterol transfer family J4N39_14410 PF01209 ubiE/COQ5 methyltransferase family J4N39_14415 PF02646 RmuC family J4N39_14430 PF10625 Universal stress protein B (UspB) J4N39_14435 PF00210 Ferritin-like domain J4N39_14440 PF00582 Universal stress protein family J4N39_14450 PF04445 Putative SAM-dependent methyltransferase J4N39_14455 PF01037 Lrp/AsnC ligand binding domain J4N39_14460 PF01432 Peptidase family M3 J4N39_14465 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ J4N39_14470 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4N39_14470 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N39_14485 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N39_14485 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_14490 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_14495 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N39_14500 PF00005 ABC transporter J4N39_14500 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N39_14530 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J4N39_14535 PF00580 UvrD/REP helicase N-terminal domain J4N39_14535 PF13361 UvrD-like helicase C-terminal domain J4N39_14540 PF16295 Tetracyclin repressor-like, C-terminal domain J4N39_14540 PF00440 Bacterial regulatory proteins, tetR family J4N39_14545 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N39_14550 PF00873 AcrB/AcrD/AcrF family J4N39_14555 PF04380 Membrane fusogenic activity J4N39_14570 PF00486 Transcriptional regulatory protein, C terminal J4N39_14570 PF18500 CadC C-terminal domain 1 J4N39_14580 PF00672 HAMP domain J4N39_14580 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J4N39_14580 PF00072 Response regulator receiver domain J4N39_14580 PF01627 Hpt domain J4N39_14580 PF00512 His Kinase A (phospho-acceptor) domain J4N39_14580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_14585 PF00580 UvrD/REP helicase N-terminal domain J4N39_14585 PF13361 UvrD-like helicase C-terminal domain J4N39_14595 PF05114 Protein of unknown function (DUF692) J4N39_14605 PF07681 DoxX J4N39_14615 PF07690 Major Facilitator Superfamily J4N39_14620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_14620 PF03466 LysR substrate binding domain J4N39_14625 PF01321 Creatinase/Prolidase N-terminal domain J4N39_14625 PF00557 Metallopeptidase family M24 J4N39_14630 PF06968 Biotin and Thiamin Synthesis associated domain J4N39_14630 PF04055 Radical SAM superfamily J4N39_14635 PF05690 Thiazole biosynthesis protein ThiG J4N39_14640 PF02597 ThiS family J4N39_14645 PF00899 ThiF family J4N39_14650 PF02581 Thiamine monophosphate synthase J4N39_14655 PF13667 ThiC-associated domain J4N39_14655 PF01964 Radical SAM ThiC family J4N39_14660 PF02537 CrcB-like protein, Camphor Resistance (CrcB) J4N39_14715 PF12724 Flavodoxin domain J4N39_14720 PF02386 Cation transport protein J4N39_14725 PF09186 Domain of unknown function (DUF1949) J4N39_14725 PF01205 Uncharacterized protein family UPF0029 J4N39_14730 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J4N39_14730 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J4N39_14730 PF00378 Enoyl-CoA hydratase/isomerase J4N39_14735 PF02803 Thiolase, C-terminal domain J4N39_14735 PF00108 Thiolase, N-terminal domain J4N39_14740 PF08240 Alcohol dehydrogenase GroES-like domain J4N39_14740 PF00107 Zinc-binding dehydrogenase J4N39_14745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_14745 PF03466 LysR substrate binding domain J4N39_14755 PF01206 Sulfurtransferase TusA J4N39_14765 PF01169 Uncharacterized protein family UPF0016 J4N39_14770 PF02091 Glycyl-tRNA synthetase alpha subunit J4N39_14775 PF05746 DALR anticodon binding domain J4N39_14775 PF02092 Glycyl-tRNA synthetase beta subunit J4N39_14780 PF00128 Alpha amylase, catalytic domain J4N39_14785 PF00155 Aminotransferase class I and II J4N39_14790 PF08019 Phosphoethanolamine transferase EptA/EptB J4N39_14790 PF00884 Sulfatase J4N39_14795 PF00011 Hsp20/alpha crystallin family J4N39_14800 PF00132 Bacterial transferase hexapeptide (six repeats) J4N39_14800 PF12804 MobA-like NTP transferase domain J4N39_14805 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain J4N39_14805 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain J4N39_14810 PF02874 ATP synthase alpha/beta family, beta-barrel domain J4N39_14810 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N39_14815 PF00231 ATP synthase J4N39_14820 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N39_14820 PF00306 ATP synthase alpha/beta chain, C terminal domain J4N39_14820 PF02874 ATP synthase alpha/beta family, beta-barrel domain J4N39_14825 PF00213 ATP synthase delta (OSCP) subunit J4N39_14830 PF00430 ATP synthase B/B' CF(0) J4N39_14835 PF00137 ATP synthase subunit C J4N39_14840 PF00119 ATP synthase A chain J4N39_14845 PF03899 ATP synthase I chain J4N39_14850 PF02195 ParB-like nuclease domain J4N39_14850 PF17762 HTH domain found in ParB protein J4N39_14855 PF13614 AAA domain J4N39_14860 PF02527 rRNA small subunit methyltransferase G J4N39_14865 PF01134 Glucose inhibited division protein A J4N39_14865 PF13932 GidA associated domain J4N39_14870 PF00258 Flavodoxin J4N39_14880 PF01926 50S ribosome-binding GTPase J4N39_14880 PF12631 MnmE helical domain J4N39_14880 PF10396 GTP-binding protein TrmE N-terminus J4N39_14885 PF02096 60Kd inner membrane protein J4N39_14885 PF14849 YidC periplasmic domain J4N39_14890 PF01809 Putative membrane protein insertion efficiency factor J4N39_14895 PF00825 Ribonuclease P J4N39_14900 PF00468 Ribosomal protein L34 J4N39_14905 PF02195 ParB-like nuclease domain J4N39_14905 PF08775 ParB family J4N39_14910 PF13614 AAA domain J4N39_14910 PF18607 ParA helix turn helix domain J4N39_14935 PF01709 Transcriptional regulator J4N39_14940 PF02885 Glycosyl transferase family, helical bundle domain J4N39_14940 PF00591 Glycosyl transferase family, a/b domain J4N39_14965 PF03793 PASTA domain J4N39_14965 PF00069 Protein kinase domain J4N39_14980 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE J4N39_14985 PF13677 Membrane MotB of proton-channel complex MotA/MotB J4N39_14985 PF00691 OmpA family J4N39_14990 PF06761 Intracellular multiplication and human macrophage-killing J4N39_14990 PF14331 ImcF-related N-terminal domain J4N39_14990 PF06744 Type VI secretion protein IcmF C-terminal J4N39_15010 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 J4N39_15015 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath J4N39_15045 PF17871 AAA lid domain J4N39_15045 PF07724 AAA domain (Cdc48 subfamily) J4N39_15045 PF10431 C-terminal, D2-small domain, of ClpB protein J4N39_15045 PF00004 ATPase family associated with various cellular activities (AAA) J4N39_15055 PF04717 Type VI secretion system, phage-baseplate injector J4N39_15065 PF00005 ABC transporter J4N39_15070 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_15075 PF00005 ABC transporter J4N39_15085 PF00672 HAMP domain J4N39_15085 PF02743 Cache domain J4N39_15085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_15090 PF00990 Diguanylate cyclase, GGDEF domain J4N39_15095 PF07690 Major Facilitator Superfamily J4N39_15100 PF03466 LysR substrate binding domain J4N39_15100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_15105 PF00857 Isochorismatase family J4N39_15110 PF12833 Helix-turn-helix domain J4N39_15110 PF02311 AraC-like ligand binding domain J4N39_15125 PF04237 YjbR J4N39_15130 PF08021 Siderophore-interacting FAD-binding domain J4N39_15130 PF04954 Siderophore-interacting protein J4N39_15170 PF00664 ABC transporter transmembrane region J4N39_15170 PF00005 ABC transporter J4N39_15190 PF01638 HxlR-like helix-turn-helix J4N39_15205 PF02311 AraC-like ligand binding domain J4N39_15205 PF12833 Helix-turn-helix domain J4N39_15225 PF12833 Helix-turn-helix domain J4N39_15230 PF14765 Polyketide synthase dehydratase J4N39_15230 PF00698 Acyl transferase domain J4N39_15230 PF08240 Alcohol dehydrogenase GroES-like domain J4N39_15230 PF16197 Ketoacyl-synthetase C-terminal extension J4N39_15230 PF00109 Beta-ketoacyl synthase, N-terminal domain J4N39_15230 PF02801 Beta-ketoacyl synthase, C-terminal domain J4N39_15230 PF08659 KR domain J4N39_15230 PF00550 Phosphopantetheine attachment site J4N39_15245 PF00873 AcrB/AcrD/AcrF family J4N39_15255 PF00072 Response regulator receiver domain J4N39_15255 PF00486 Transcriptional regulatory protein, C terminal J4N39_15260 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N39_15260 PF00072 Response regulator receiver domain J4N39_15260 PF00989 PAS fold J4N39_15260 PF01627 Hpt domain J4N39_15260 PF00512 His Kinase A (phospho-acceptor) domain J4N39_15260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_15265 PF01568 Molydopterin dinucleotide binding domain J4N39_15265 PF04324 BFD-like [2Fe-2S] binding domain J4N39_15265 PF00384 Molybdopterin oxidoreductase J4N39_15265 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J4N39_15270 PF10414 Sirohaem synthase dimerisation region J4N39_15270 PF14824 Sirohaem biosynthesis protein central J4N39_15270 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N39_15275 PF04324 BFD-like [2Fe-2S] binding domain J4N39_15275 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J4N39_15275 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain J4N39_15275 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N39_15275 PF18267 Rubredoxin NAD+ reductase C-terminal domain J4N39_15285 PF07690 Major Facilitator Superfamily J4N39_15290 PF00069 Protein kinase domain J4N39_15290 PF03793 PASTA domain J4N39_15295 PF01256 Carbohydrate kinase J4N39_15295 PF03853 YjeF-related protein N-terminus J4N39_15310 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N39_15320 PF13187 4Fe-4S dicluster domain J4N39_15320 PF01645 Conserved region in glutamate synthase J4N39_15325 PF02028 BCCT, betaine/carnitine/choline family transporter J4N39_15350 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 J4N39_15350 PF02378 Phosphotransferase system, EIIC J4N39_15350 PF00367 phosphotransferase system, EIIB J4N39_15355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_15355 PF03466 LysR substrate binding domain J4N39_15365 PF10282 Lactonase, 7-bladed beta-propeller J4N39_15370 PF01575 MaoC like domain J4N39_15375 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus J4N39_15375 PF00561 alpha/beta hydrolase fold J4N39_15385 PF16925 Tetracyclin repressor-like, C-terminal domain J4N39_15385 PF00440 Bacterial regulatory proteins, tetR family J4N39_15390 PF00107 Zinc-binding dehydrogenase J4N39_15390 PF16884 N-terminal domain of oxidoreductase J4N39_15395 PF17676 LD-carboxypeptidase C-terminal domain J4N39_15395 PF02016 LD-carboxypeptidase N-terminal domain J4N39_15400 PF02903 Alpha amylase, N-terminal ig-like domain J4N39_15400 PF00128 Alpha amylase, catalytic domain J4N39_15405 PF00291 Pyridoxal-phosphate dependent enzyme J4N39_15420 PF01180 Dihydroorotate dehydrogenase J4N39_15430 PF00271 Helicase conserved C-terminal domain J4N39_15430 PF00270 DEAD/DEAH box helicase J4N39_15435 PF01053 Cys/Met metabolism PLP-dependent enzyme J4N39_15440 PF01037 Lrp/AsnC ligand binding domain J4N39_15445 PF12729 Four helix bundle sensory module for signal transduction J4N39_15445 PF00672 HAMP domain J4N39_15445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_15455 PF01810 LysE type translocator J4N39_15460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_15460 PF03466 LysR substrate binding domain J4N39_15475 PF07690 Major Facilitator Superfamily J4N39_15480 PF04219 Protein of unknown function, DUF J4N39_15485 PF03466 LysR substrate binding domain J4N39_15485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_15500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_15500 PF03466 LysR substrate binding domain J4N39_15505 PF00248 Aldo/keto reductase family J4N39_15515 PF01590 GAF domain J4N39_15515 PF00158 Sigma-54 interaction domain J4N39_15525 PF00440 Bacterial regulatory proteins, tetR family J4N39_15540 PF08713 DNA alkylation repair enzyme J4N39_15545 PF03063 Prismane/CO dehydrogenase family J4N39_15550 PF00175 Oxidoreductase NAD-binding domain J4N39_15550 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N39_15550 PF00970 Oxidoreductase FAD-binding domain J4N39_15560 PF00106 short chain dehydrogenase J4N39_15565 PF02311 AraC-like ligand binding domain J4N39_15565 PF12833 Helix-turn-helix domain J4N39_15570 PF04055 Radical SAM superfamily J4N39_15575 PF18267 Rubredoxin NAD+ reductase C-terminal domain J4N39_15575 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain J4N39_15575 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J4N39_15575 PF04324 BFD-like [2Fe-2S] binding domain J4N39_15575 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N39_15580 PF13806 Rieske-like [2Fe-2S] domain J4N39_15585 PF01226 Formate/nitrite transporter J4N39_15590 PF14824 Sirohaem biosynthesis protein central J4N39_15590 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N39_15590 PF10414 Sirohaem synthase dimerisation region J4N39_15595 PF00005 ABC transporter J4N39_15600 PF01497 Periplasmic binding protein J4N39_15605 PF01032 FecCD transport family J4N39_15610 PF00593 TonB dependent receptor J4N39_15610 PF07715 TonB-dependent Receptor Plug Domain J4N39_15615 PF04183 IucA / IucC family J4N39_15615 PF06276 Ferric iron reductase FhuF-like transporter J4N39_15625 PF00593 TonB dependent receptor J4N39_15625 PF07715 TonB-dependent Receptor Plug Domain J4N39_15630 PF00005 ABC transporter J4N39_15635 PF01497 Periplasmic binding protein J4N39_15640 PF01032 FecCD transport family J4N39_15650 PF06276 Ferric iron reductase FhuF-like transporter J4N39_15650 PF04183 IucA / IucC family J4N39_15655 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) J4N39_15660 PF03880 DbpA RNA binding domain J4N39_15660 PF00271 Helicase conserved C-terminal domain J4N39_15660 PF00270 DEAD/DEAH box helicase J4N39_15665 PF00990 Diguanylate cyclase, GGDEF domain J4N39_15665 PF00072 Response regulator receiver domain J4N39_15670 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J4N39_15670 PF00128 Alpha amylase, catalytic domain J4N39_15675 PF02264 LamB porin J4N39_15680 PF07148 Maltose operon periplasmic protein precursor (MalM) J4N39_15690 PF00375 Sodium:dicarboxylate symporter family J4N39_15695 PF00672 HAMP domain J4N39_15695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_15695 PF00512 His Kinase A (phospho-acceptor) domain J4N39_15695 PF01627 Hpt domain J4N39_15695 PF00072 Response regulator receiver domain J4N39_15695 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J4N39_15705 PF02630 SCO1/SenC J4N39_15715 PF00535 Glycosyl transferase family 2 J4N39_15720 PF07690 Major Facilitator Superfamily J4N39_15730 PF08220 DeoR-like helix-turn-helix domain J4N39_15730 PF00455 DeoR C terminal sensor domain J4N39_15735 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J4N39_15735 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J4N39_15750 PF00196 Bacterial regulatory proteins, luxR family J4N39_15750 PF17874 MalT-like TPR region J4N39_15755 PF00343 Carbohydrate phosphorylase J4N39_15760 PF02446 4-alpha-glucanotransferase J4N39_15765 PF00128 Alpha amylase, catalytic domain J4N39_15765 PF02806 Alpha amylase, C-terminal all-beta domain J4N39_15765 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J4N39_15775 PF08447 PAS fold J4N39_15775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_15780 PF02743 Cache domain J4N39_15780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_15780 PF00672 HAMP domain J4N39_15785 PF07995 Glucose / Sorbosone dehydrogenase J4N39_15800 PF01554 MatE J4N39_15825 PF00873 AcrB/AcrD/AcrF family J4N39_15830 PF13533 Biotin-lipoyl like J4N39_15835 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J4N39_15835 PF00072 Response regulator receiver domain J4N39_15835 PF01627 Hpt domain J4N39_15835 PF00512 His Kinase A (phospho-acceptor) domain J4N39_15835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_15835 PF00672 HAMP domain J4N39_15840 PF00072 Response regulator receiver domain J4N39_15840 PF00486 Transcriptional regulatory protein, C terminal J4N39_15850 PF00128 Alpha amylase, catalytic domain J4N39_15855 PF17200 Single Cache domain 2 J4N39_15855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_15855 PF00672 HAMP domain J4N39_15860 PF05230 MASE2 domain J4N39_15860 PF00990 Diguanylate cyclase, GGDEF domain J4N39_15865 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin J4N39_15870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_15870 PF00672 HAMP domain J4N39_15870 PF02743 Cache domain J4N39_15875 PF00583 Acetyltransferase (GNAT) family J4N39_15880 PF17158 Membrane-associated sensor, integral membrane domain J4N39_15880 PF00990 Diguanylate cyclase, GGDEF domain J4N39_15890 PF03193 RsgA GTPase J4N39_15915 PF07690 Major Facilitator Superfamily J4N39_15925 PF00563 EAL domain J4N39_15925 PF00990 Diguanylate cyclase, GGDEF domain J4N39_15930 PF00005 ABC transporter J4N39_15930 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N39_15935 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N39_15935 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_15940 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_15945 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N39_15955 PF01568 Molydopterin dinucleotide binding domain J4N39_15955 PF00384 Molybdopterin oxidoreductase J4N39_15955 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J4N39_15980 PF04616 Glycosyl hydrolases family 43 J4N39_15980 PF16369 C-terminal lipocalin-like domain J4N39_15985 PF13407 Periplasmic binding protein domain J4N39_15990 PF00005 ABC transporter J4N39_15995 PF02653 Branched-chain amino acid transport system / permease component J4N39_16010 PF12833 Helix-turn-helix domain J4N39_16015 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J4N39_16015 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J4N39_16020 PF01037 Lrp/AsnC ligand binding domain J4N39_16035 PF00392 Bacterial regulatory proteins, gntR family J4N39_16035 PF07702 UTRA domain J4N39_16060 PF00990 Diguanylate cyclase, GGDEF domain J4N39_16065 PF01219 Prokaryotic diacylglycerol kinase J4N39_16075 PF12848 ABC transporter J4N39_16075 PF00005 ABC transporter J4N39_16085 PF02384 N-6 DNA Methylase J4N39_16090 PF06250 YhcG PDDEXK nuclease domain J4N39_16090 PF17761 DUF1016 N-terminal domain J4N39_16095 PF01420 Type I restriction modification DNA specificity domain J4N39_16105 PF11867 Domain of unknown function (DUF3387) J4N39_16105 PF18766 SWI2/SNF2 ATPase J4N39_16105 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) J4N39_16110 PF02743 Cache domain J4N39_16110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_16110 PF00512 His Kinase A (phospho-acceptor) domain J4N39_16115 PF13609 Gram-negative porin J4N39_16120 PF04055 Radical SAM superfamily J4N39_16125 PF02901 Pyruvate formate lyase-like J4N39_16125 PF01228 Glycine radical J4N39_16130 PF00465 Iron-containing alcohol dehydrogenase J4N39_16135 PF02733 Dak1 domain J4N39_16140 PF02734 DAK2 domain J4N39_16145 PF02896 PEP-utilising enzyme, TIM barrel domain J4N39_16145 PF00391 PEP-utilising enzyme, mobile domain J4N39_16145 PF05524 PEP-utilising enzyme, N-terminal J4N39_16165 PF00989 PAS fold J4N39_16165 PF02954 Bacterial regulatory protein, Fis family J4N39_16165 PF00158 Sigma-54 interaction domain J4N39_16170 PF08220 DeoR-like helix-turn-helix domain J4N39_16170 PF00455 DeoR C terminal sensor domain J4N39_16175 PF00294 pfkB family carbohydrate kinase J4N39_16180 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J4N39_16180 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J4N39_16185 PF01263 Aldose 1-epimerase J4N39_16200 PF08447 PAS fold J4N39_16200 PF08448 PAS fold J4N39_16200 PF00563 EAL domain J4N39_16200 PF00990 Diguanylate cyclase, GGDEF domain J4N39_16205 PF01116 Fructose-bisphosphate aldolase class-II J4N39_16215 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J4N39_16220 PF03480 Bacterial extracellular solute-binding protein, family 7 J4N39_16225 PF01055 Glycosyl hydrolases family 31 J4N39_16240 PF00990 Diguanylate cyclase, GGDEF domain J4N39_16240 PF00563 EAL domain J4N39_16240 PF03707 Bacterial signalling protein N terminal repeat J4N39_16245 PF02743 Cache domain J4N39_16245 PF00672 HAMP domain J4N39_16245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_16255 PF00465 Iron-containing alcohol dehydrogenase J4N39_16265 PF10417 C-terminal domain of 1-Cys peroxiredoxin J4N39_16265 PF00578 AhpC/TSA family J4N39_16270 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain J4N39_16270 PF02777 Iron/manganese superoxide dismutases, C-terminal domain J4N39_16280 PF00578 AhpC/TSA family J4N39_16280 PF10417 C-terminal domain of 1-Cys peroxiredoxin J4N39_16285 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N39_16285 PF13192 Thioredoxin domain J4N39_16290 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J4N39_16290 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J4N39_16340 PF04972 BON domain J4N39_16340 PF00263 Bacterial type II and III secretion system protein J4N39_16340 PF13629 Pilus formation protein N terminal region J4N39_16350 PF10609 NUBPL iron-transfer P-loop NTPase J4N39_16355 PF00437 Type II/IV secretion system protein J4N39_16375 PF00691 OmpA family J4N39_16385 PF03616 Sodium/glutamate symporter J4N39_16390 PF17200 Single Cache domain 2 J4N39_16390 PF00672 HAMP domain J4N39_16390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_16395 PF00672 HAMP domain J4N39_16395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_16395 PF17200 Single Cache domain 2 J4N39_16425 PF01979 Amidohydrolase family J4N39_16445 PF09278 MerR, DNA binding J4N39_16445 PF00376 MerR family regulatory protein J4N39_16450 PF02566 OsmC-like protein J4N39_16470 PF00486 Transcriptional regulatory protein, C terminal J4N39_16470 PF00072 Response regulator receiver domain J4N39_16475 PF00512 His Kinase A (phospho-acceptor) domain J4N39_16475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_16475 PF00672 HAMP domain J4N39_16480 PF02798 Glutathione S-transferase, N-terminal domain J4N39_16485 PF01042 Endoribonuclease L-PSP J4N39_16495 PF02397 Bacterial sugar transferase J4N39_16505 PF00534 Glycosyl transferases group 1 J4N39_16505 PF13439 Glycosyltransferase Family 4 J4N39_16545 PF00534 Glycosyl transferases group 1 J4N39_16545 PF13439 Glycosyltransferase Family 4 J4N39_16550 PF02954 Bacterial regulatory protein, Fis family J4N39_16550 PF00158 Sigma-54 interaction domain J4N39_16550 PF00072 Response regulator receiver domain J4N39_16555 PF00672 HAMP domain J4N39_16555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_16555 PF00512 His Kinase A (phospho-acceptor) domain J4N39_16555 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J4N39_16555 PF00072 Response regulator receiver domain J4N39_16555 PF01627 Hpt domain J4N39_16570 PF00691 OmpA family J4N39_16590 PF01979 Amidohydrolase family J4N39_16600 PF00881 Nitroreductase family J4N39_16605 PF01053 Cys/Met metabolism PLP-dependent enzyme J4N39_16615 PF00583 Acetyltransferase (GNAT) family J4N39_16625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_16625 PF00672 HAMP domain J4N39_16630 PF12849 PBP superfamily domain J4N39_16635 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_16640 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_16645 PF00005 ABC transporter J4N39_16660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_16660 PF03466 LysR substrate binding domain J4N39_16665 PF00501 AMP-binding enzyme J4N39_16665 PF13193 AMP-binding enzyme C-terminal domain J4N39_16670 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J4N39_16685 PF12729 Four helix bundle sensory module for signal transduction J4N39_16685 PF00672 HAMP domain J4N39_16685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_16695 PF00356 Bacterial regulatory proteins, lacI family J4N39_16705 PF00722 Glycosyl hydrolases family 16 J4N39_16710 PF01136 Peptidase family U32 J4N39_16710 PF16325 Peptidase family U32 C-terminal domain J4N39_16715 PF03786 D-mannonate dehydratase (UxuA) J4N39_16720 PF00392 Bacterial regulatory proteins, gntR family J4N39_16720 PF07729 FCD domain J4N39_16725 PF03480 Bacterial extracellular solute-binding protein, family 7 J4N39_16730 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component J4N39_16735 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J4N39_16740 PF01232 Mannitol dehydrogenase Rossmann domain J4N39_16740 PF08125 Mannitol dehydrogenase C-terminal domain J4N39_16745 PF02614 Glucuronate isomerase J4N39_16750 PF00294 pfkB family carbohydrate kinase J4N39_16755 PF01081 KDPG and KHG aldolase J4N39_16760 PF10688 Bacterial inner membrane protein J4N39_16770 PF01554 MatE J4N39_16780 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N39_16785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_16785 PF03466 LysR substrate binding domain J4N39_16790 PF00472 RF-1 domain J4N39_16815 PF00703 Glycosyl hydrolases family 2 J4N39_16815 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J4N39_16815 PF02837 Glycosyl hydrolases family 2, sugar binding domain J4N39_16815 PF16355 Domain of unknown function (DUF4982) J4N39_16830 PF03618 Kinase/pyrophosphorylase J4N39_16835 PF00391 PEP-utilising enzyme, mobile domain J4N39_16835 PF02896 PEP-utilising enzyme, TIM barrel domain J4N39_16835 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain J4N39_16840 PF13276 HTH-like domain J4N39_16840 PF00665 Integrase core domain J4N39_16840 PF13333 Integrase core domain J4N39_16850 PF00563 EAL domain J4N39_16850 PF12792 CSS motif domain associated with EAL J4N39_16860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_16860 PF03466 LysR substrate binding domain J4N39_16880 PF01212 Beta-eliminating lyase J4N39_16890 PF07517 SecA DEAD-like domain J4N39_16890 PF02810 SEC-C motif J4N39_16890 PF07516 SecA Wing and Scaffold domain J4N39_16890 PF01043 SecA preprotein cross-linking domain J4N39_16920 PF02567 Phenazine biosynthesis-like protein J4N39_16940 PF09905 DNA-binding protein VF530 J4N39_16945 PF00271 Helicase conserved C-terminal domain J4N39_16945 PF00270 DEAD/DEAH box helicase J4N39_16950 PF06483 Chitinase C J4N39_16950 PF00704 Glycosyl hydrolases family 18 J4N39_16960 PF13419 Haloacid dehalogenase-like hydrolase J4N39_16975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_16975 PF00672 HAMP domain J4N39_16975 PF02743 Cache domain J4N39_16980 PF13309 HTH domain J4N39_16980 PF08348 YheO-like PAS domain J4N39_16985 PF03313 Serine dehydratase alpha chain J4N39_16990 PF01042 Endoribonuclease L-PSP J4N39_17010 PF01546 Peptidase family M20/M25/M40 J4N39_17010 PF07687 Peptidase dimerisation domain J4N39_17015 PF08348 YheO-like PAS domain J4N39_17015 PF13309 HTH domain J4N39_17020 PF13520 Amino acid permease J4N39_17025 PF07722 Peptidase C26 J4N39_17040 PF14579 Helix-hairpin-helix motif J4N39_17040 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J4N39_17040 PF11490 DNA polymerase III polC-type N-terminus II J4N39_17040 PF07733 Bacterial DNA polymerase III alpha NTPase domain J4N39_17040 PF00929 Exonuclease J4N39_17040 PF02811 PHP domain J4N39_17045 PF01979 Amidohydrolase family J4N39_17050 PF07683 Cobalamin synthesis protein cobW C-terminal domain J4N39_17050 PF02492 CobW/HypB/UreG, nucleotide-binding domain J4N39_17070 PF02743 Cache domain J4N39_17070 PF00672 HAMP domain J4N39_17070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_17095 PF00356 Bacterial regulatory proteins, lacI family J4N39_17100 PF03600 Citrate transporter J4N39_17120 PF00293 NUDIX domain J4N39_17140 PF00990 Diguanylate cyclase, GGDEF domain J4N39_17155 PF01048 Phosphorylase superfamily J4N39_17165 PF13411 MerR HTH family regulatory protein J4N39_17170 PF00875 DNA photolyase J4N39_17170 PF03441 FAD binding domain of DNA photolyase J4N39_17175 PF01476 LysM domain J4N39_17175 PF03734 L,D-transpeptidase catalytic domain J4N39_17175 PF17969 L,D-transpeptidase C-terminal domain J4N39_17185 PF00271 Helicase conserved C-terminal domain J4N39_17185 PF00270 DEAD/DEAH box helicase J4N39_17210 PF01618 MotA/TolQ/ExbB proton channel family J4N39_17215 PF00691 OmpA family J4N39_17215 PF13677 Membrane MotB of proton-channel complex MotA/MotB J4N39_17225 PF03466 LysR substrate binding domain J4N39_17225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_17235 PF00106 short chain dehydrogenase J4N39_17245 PF13230 Glutamine amidotransferases class-II J4N39_17260 PF01212 Beta-eliminating lyase J4N39_17275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_17275 PF00672 HAMP domain J4N39_17275 PF17200 Single Cache domain 2 J4N39_17315 PF00665 Integrase core domain J4N39_17315 PF13333 Integrase core domain J4N39_17315 PF13276 HTH-like domain J4N39_17325 PF01323 DSBA-like thioredoxin domain J4N39_17340 PF00990 Diguanylate cyclase, GGDEF domain J4N39_17340 PF07694 5TMR of 5TMR-LYT J4N39_17345 PF02378 Phosphotransferase system, EIIC J4N39_17345 PF00367 phosphotransferase system, EIIB J4N39_17350 PF00356 Bacterial regulatory proteins, lacI family J4N39_17355 PF08244 Glycosyl hydrolases family 32 C terminal J4N39_17355 PF00251 Glycosyl hydrolases family 32 N-terminal domain J4N39_17360 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J4N39_17360 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J4N39_17365 PF00456 Transketolase, thiamine diphosphate binding domain J4N39_17365 PF02780 Transketolase, C-terminal domain J4N39_17365 PF02779 Transketolase, pyrimidine binding domain J4N39_17370 PF00923 Transaldolase/Fructose-6-phosphate aldolase J4N39_17380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_17380 PF03466 LysR substrate binding domain J4N39_17385 PF00990 Diguanylate cyclase, GGDEF domain J4N39_17385 PF03707 Bacterial signalling protein N terminal repeat J4N39_17385 PF00563 EAL domain J4N39_17390 PF00581 Rhodanese-like domain J4N39_17400 PF00899 ThiF family J4N39_17405 PF00994 Probable molybdopterin binding domain J4N39_17405 PF03453 MoeA N-terminal region (domain I and II) J4N39_17405 PF03454 MoeA C-terminal region (domain IV) J4N39_17410 PF01227 GTP cyclohydrolase I J4N39_17415 PF00672 HAMP domain J4N39_17415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_17420 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J4N39_17420 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N39_17430 PF00691 OmpA family J4N39_17430 PF13505 Outer membrane protein beta-barrel domain J4N39_17435 PF02694 Uncharacterised BCR, YnfA/UPF0060 family J4N39_17445 PF01268 Formate--tetrahydrofolate ligase J4N39_17450 PF00294 pfkB family carbohydrate kinase J4N39_17465 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J4N39_17475 PF00563 EAL domain J4N39_17475 PF03707 Bacterial signalling protein N terminal repeat J4N39_17475 PF00990 Diguanylate cyclase, GGDEF domain J4N39_17485 PF02696 Uncharacterized ACR, YdiU/UPF0061 family J4N39_17505 PF00999 Sodium/hydrogen exchanger family J4N39_17505 PF02254 TrkA-N domain J4N39_17510 PF02525 Flavodoxin-like fold J4N39_17520 PF00005 ABC transporter J4N39_17525 PF01979 Amidohydrolase family J4N39_17530 PF00849 RNA pseudouridylate synthase J4N39_17535 PF00730 HhH-GPD superfamily base excision DNA repair protein J4N39_17535 PF06029 AlkA N-terminal domain J4N39_17540 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J4N39_17540 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain J4N39_17545 PF16657 Maltogenic Amylase, C-terminal domain J4N39_17545 PF02903 Alpha amylase, N-terminal ig-like domain J4N39_17545 PF00128 Alpha amylase, catalytic domain J4N39_17550 PF00583 Acetyltransferase (GNAT) family J4N39_17560 PF00529 HlyD membrane-fusion protein of T1SS J4N39_17560 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N39_17565 PF11742 Protein of unknown function (DUF3302) J4N39_17570 PF16363 GDP-mannose 4,6 dehydratase J4N39_17575 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain J4N39_17575 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain J4N39_17580 PF08544 GHMP kinases C terminal J4N39_17580 PF10509 Galactokinase galactose-binding signature J4N39_17580 PF00288 GHMP kinases N terminal domain J4N39_17600 PF04363 Protein of unknown function (DUF496) J4N39_17610 PF04337 Protein of unknown function, DUF480 J4N39_17615 PF01541 GIY-YIG catalytic domain J4N39_17620 PF00990 Diguanylate cyclase, GGDEF domain J4N39_17620 PF00563 EAL domain J4N39_17625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_17625 PF03466 LysR substrate binding domain J4N39_17630 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family J4N39_17640 PF00704 Glycosyl hydrolases family 18 J4N39_17640 PF08329 Chitinase A, N-terminal domain J4N39_17650 PF07690 Major Facilitator Superfamily J4N39_17665 PF00155 Aminotransferase class I and II J4N39_17670 PF00990 Diguanylate cyclase, GGDEF domain J4N39_17680 PF03264 NapC/NirT cytochrome c family, N-terminal region J4N39_17685 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) J4N39_17690 PF12801 4Fe-4S binding domain J4N39_17690 PF12837 4Fe-4S binding domain J4N39_17695 PF12800 4Fe-4S binding domain J4N39_17695 PF12838 4Fe-4S dicluster domain J4N39_17700 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J4N39_17700 PF00384 Molybdopterin oxidoreductase J4N39_17700 PF01568 Molydopterin dinucleotide binding domain J4N39_17705 PF03927 NapD protein J4N39_17715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_17715 PF00672 HAMP domain J4N39_17715 PF07730 Histidine kinase J4N39_17715 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term J4N39_17720 PF00196 Bacterial regulatory proteins, luxR family J4N39_17720 PF00072 Response regulator receiver domain J4N39_17725 PF13407 Periplasmic binding protein domain J4N39_17730 PF00072 Response regulator receiver domain J4N39_17730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_17730 PF00512 His Kinase A (phospho-acceptor) domain J4N39_17730 PF09308 LuxQ, periplasmic J4N39_17780 PF03060 Nitronate monooxygenase J4N39_17785 PF03466 LysR substrate binding domain J4N39_17785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_17790 PF01370 NAD dependent epimerase/dehydratase family J4N39_17800 PF01575 MaoC like domain J4N39_17815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_17815 PF03466 LysR substrate binding domain J4N39_17820 PF08443 RimK-like ATP-grasp domain J4N39_17820 PF18030 RimK PreATP-grasp domain J4N39_17830 PF08443 RimK-like ATP-grasp domain J4N39_17830 PF18030 RimK PreATP-grasp domain J4N39_17835 PF00056 lactate/malate dehydrogenase, NAD binding domain J4N39_17835 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain J4N39_17840 PF02913 FAD linked oxidases, C-terminal domain J4N39_17840 PF01565 FAD binding domain J4N39_17845 PF03466 LysR substrate binding domain J4N39_17845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_17860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_17860 PF03466 LysR substrate binding domain J4N39_17865 PF00561 alpha/beta hydrolase fold J4N39_17880 PF13460 NAD(P)H-binding J4N39_17880 PF11066 Protein of unknown function (DUF2867) J4N39_17885 PF02690 Na+/Pi-cotransporter J4N39_17895 PF00196 Bacterial regulatory proteins, luxR family J4N39_17895 PF17874 MalT-like TPR region J4N39_17905 PF00892 EamA-like transporter family J4N39_17955 PF02347 Glycine cleavage system P-protein J4N39_17960 PF01597 Glycine cleavage H-protein J4N39_17965 PF00464 Serine hydroxymethyltransferase J4N39_17975 PF01571 Aminomethyltransferase folate-binding domain J4N39_17975 PF08669 Glycine cleavage T-protein C-terminal barrel domain J4N39_18005 PF11756 Nitrous oxide-stimulated promoter J4N39_18010 PF05230 MASE2 domain J4N39_18010 PF00990 Diguanylate cyclase, GGDEF domain J4N39_18020 PF17853 GGDEF-like domain J4N39_18020 PF12833 Helix-turn-helix domain J4N39_18025 PF01979 Amidohydrolase family J4N39_18030 PF03473 MOSC domain J4N39_18030 PF03476 MOSC N-terminal beta barrel domain J4N39_18030 PF03473 MOSC domain J4N39_18030 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N39_18030 PF03476 MOSC N-terminal beta barrel domain J4N39_18030 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N39_18035 PF02540 NAD synthase J4N39_18065 PF00375 Sodium:dicarboxylate symporter family J4N39_18070 PF00294 pfkB family carbohydrate kinase J4N39_18075 PF13407 Periplasmic binding protein domain J4N39_18075 PF00356 Bacterial regulatory proteins, lacI family J4N39_18080 PF08274 PhnA Zinc-Ribbon J4N39_18080 PF03831 PhnA domain J4N39_18090 PF01906 Putative heavy-metal-binding J4N39_18095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_18095 PF03466 LysR substrate binding domain J4N39_18120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_18120 PF00672 HAMP domain J4N39_18120 PF12729 Four helix bundle sensory module for signal transduction J4N39_18125 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N39_18130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_18130 PF03466 LysR substrate binding domain J4N39_18135 PF00155 Aminotransferase class I and II J4N39_18140 PF08240 Alcohol dehydrogenase GroES-like domain J4N39_18140 PF00107 Zinc-binding dehydrogenase J4N39_18180 PF01381 Helix-turn-helix J4N39_18210 PF03354 Phage Terminase J4N39_18220 PF06147 Protein of unknown function (DUF968) J4N39_18305 PF03354 Phage Terminase J4N39_18410 PF08240 Alcohol dehydrogenase GroES-like domain J4N39_18410 PF00107 Zinc-binding dehydrogenase J4N39_18425 PF12833 Helix-turn-helix domain J4N39_18435 PF17837 4'-phosphopantetheinyl transferase N-terminal domain J4N39_18435 PF01648 4'-phosphopantetheinyl transferase superfamily J4N39_18445 PF08787 Alginate lyase J4N39_18470 PF12805 FUSC-like inner membrane protein yccS J4N39_18475 PF13361 UvrD-like helicase C-terminal domain J4N39_18475 PF00580 UvrD/REP helicase N-terminal domain J4N39_18475 PF12462 DNA helicase IV / RNA helicase N terminal J4N39_18480 PF01965 DJ-1/PfpI family J4N39_18485 PF02142 MGS-like domain J4N39_18490 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family J4N39_18495 PF00672 HAMP domain J4N39_18495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_18495 PF01627 Hpt domain J4N39_18495 PF00072 Response regulator receiver domain J4N39_18495 PF00512 His Kinase A (phospho-acceptor) domain J4N39_18505 PF18081 Fanconi anemia-associated nuclease SAP domain J4N39_18505 PF08774 VRR-NUC domain J4N39_18525 PF00072 Response regulator receiver domain J4N39_18525 PF01627 Hpt domain J4N39_18525 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J4N39_18525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_18525 PF00672 HAMP domain J4N39_18525 PF00512 His Kinase A (phospho-acceptor) domain J4N39_18535 PF00478 IMP dehydrogenase / GMP reductase domain J4N39_18545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_18545 PF03466 LysR substrate binding domain J4N39_18550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_18550 PF00672 HAMP domain J4N39_18560 PF01979 Amidohydrolase family J4N39_18565 PF03606 C4-dicarboxylate anaerobic carrier J4N39_18570 PF01625 Peptide methionine sulfoxide reductase J4N39_18570 PF01641 SelR domain J4N39_18575 PF02632 BioY family J4N39_18580 PF02361 Cobalt transport protein J4N39_18585 PF00005 ABC transporter J4N39_18595 PF12833 Helix-turn-helix domain J4N39_18600 PF00881 Nitroreductase family J4N39_18610 PF03707 Bacterial signalling protein N terminal repeat J4N39_18610 PF00563 EAL domain J4N39_18610 PF00990 Diguanylate cyclase, GGDEF domain J4N39_18615 PF00990 Diguanylate cyclase, GGDEF domain J4N39_18615 PF07694 5TMR of 5TMR-LYT J4N39_18620 PF01329 Pterin 4 alpha carbinolamine dehydratase J4N39_18625 PF00351 Biopterin-dependent aromatic amino acid hydroxylase J4N39_18635 PF00563 EAL domain J4N39_18635 PF00990 Diguanylate cyclase, GGDEF domain J4N39_18635 PF03707 Bacterial signalling protein N terminal repeat J4N39_18640 PF00871 Acetokinase family J4N39_18650 PF07804 HipA-like C-terminal domain J4N39_18650 PF13657 HipA N-terminal domain J4N39_18655 PF01047 MarR family J4N39_18660 PF02566 OsmC-like protein J4N39_18665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_18665 PF00072 Response regulator receiver domain J4N39_18670 PF00155 Aminotransferase class I and II J4N39_18685 PF01926 50S ribosome-binding GTPase J4N39_18690 PF08543 Phosphomethylpyrimidine kinase J4N39_18695 PF00005 ABC transporter J4N39_18700 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_18705 PF09084 NMT1/THI5 like J4N39_18710 PF03070 TENA/THI-4/PQQC family J4N39_18720 PF03091 CutA1 divalent ion tolerance protein J4N39_18735 PF01556 DnaJ C terminal domain J4N39_18735 PF00684 DnaJ central domain J4N39_18735 PF00226 DnaJ domain J4N39_18740 PF00085 Thioredoxin J4N39_18745 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J4N39_18745 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J4N39_18750 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J4N39_18760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_18760 PF00672 HAMP domain J4N39_18765 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4N39_18765 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N39_18780 PF00873 AcrB/AcrD/AcrF family J4N39_18785 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N39_18790 PF02626 Carboxyltransferase domain, subdomain A and B J4N39_18800 PF03746 LamB/YcsF family J4N39_18805 PF16363 GDP-mannose 4,6 dehydratase J4N39_18810 PF00593 TonB dependent receptor J4N39_18810 PF07715 TonB-dependent Receptor Plug Domain J4N39_18815 PF03466 LysR substrate binding domain J4N39_18815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_18820 PF00583 Acetyltransferase (GNAT) family J4N39_18820 PF13607 Succinyl-CoA ligase like flavodoxin domain J4N39_18820 PF13380 CoA binding domain J4N39_18825 PF05036 Sporulation related domain J4N39_18830 PF07478 D-ala D-ala ligase C-terminus J4N39_18830 PF01820 D-ala D-ala ligase N-terminus J4N39_18845 PF01253 Translation initiation factor SUI1 J4N39_18855 PF03701 Uncharacterised protein family (UPF0181) J4N39_18870 PF00072 Response regulator receiver domain J4N39_18870 PF00486 Transcriptional regulatory protein, C terminal J4N39_18875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_18875 PF00512 His Kinase A (phospho-acceptor) domain J4N39_18880 PF02233 NAD(P) transhydrogenase beta subunit J4N39_18885 PF05222 Alanine dehydrogenase/PNT, N-terminal domain J4N39_18885 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch J4N39_18885 PF01262 Alanine dehydrogenase/PNT, C-terminal domain J4N39_18900 PF17158 Membrane-associated sensor, integral membrane domain J4N39_18900 PF00990 Diguanylate cyclase, GGDEF domain J4N39_18905 PF00360 Phytochrome region J4N39_18905 PF01590 GAF domain J4N39_18905 PF00563 EAL domain J4N39_18905 PF00990 Diguanylate cyclase, GGDEF domain J4N39_18915 PF00691 OmpA family J4N39_18915 PF01389 OmpA-like transmembrane domain J4N39_18920 PF17200 Single Cache domain 2 J4N39_18920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_18920 PF00672 HAMP domain J4N39_18925 PF00005 ABC transporter J4N39_18925 PF03459 TOBE domain J4N39_18930 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_18940 PF07685 CobB/CobQ-like glutamine amidotransferase domain J4N39_18955 PF08443 RimK-like ATP-grasp domain J4N39_18955 PF18030 RimK PreATP-grasp domain J4N39_18960 PF00155 Aminotransferase class I and II J4N39_18970 PF13597 Anaerobic ribonucleoside-triphosphate reductase J4N39_18970 PF03477 ATP cone domain J4N39_18980 PF01134 Glucose inhibited division protein A J4N39_18990 PF00005 ABC transporter J4N39_18995 PF13472 GDSL-like Lipase/Acylhydrolase family J4N39_19000 PF12241 Trans-2-enoyl-CoA reductase catalytic region J4N39_19000 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase J4N39_19000 PF07055 Enoyl reductase FAD binding domain J4N39_19005 PF13188 PAS domain J4N39_19005 PF03707 Bacterial signalling protein N terminal repeat J4N39_19005 PF00990 Diguanylate cyclase, GGDEF domain J4N39_19005 PF00563 EAL domain J4N39_19015 PF00149 Calcineurin-like phosphoesterase J4N39_19015 PF02872 5'-nucleotidase, C-terminal domain J4N39_19020 PF11398 Protein of unknown function (DUF2813) J4N39_19025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_19025 PF03466 LysR substrate binding domain J4N39_19030 PF01226 Formate/nitrite transporter J4N39_19035 PF04264 YceI-like domain J4N39_19040 PF01292 Prokaryotic cytochrome b561 J4N39_19045 PF00174 Oxidoreductase molybdopterin binding domain J4N39_19050 PF01794 Ferric reductase like transmembrane component J4N39_19075 PF02567 Phenazine biosynthesis-like protein J4N39_19095 PF00378 Enoyl-CoA hydratase/isomerase J4N39_19110 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J4N39_19120 PF12793 Sugar transport-related sRNA regulator N-term J4N39_19120 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N39_19130 PF03061 Thioesterase superfamily J4N39_19140 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J4N39_19145 PF12262 Bacterial virulence factor lipase N-terminal J4N39_19160 PF03891 Domain of unknown function (DUF333) J4N39_19175 PF00924 Mechanosensitive ion channel J4N39_19190 PF13426 PAS domain J4N39_19190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_19190 PF13188 PAS domain J4N39_19195 PF02954 Bacterial regulatory protein, Fis family J4N39_19195 PF00072 Response regulator receiver domain J4N39_19195 PF00158 Sigma-54 interaction domain J4N39_19200 PF00512 His Kinase A (phospho-acceptor) domain J4N39_19200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_19215 PF14602 Hexapeptide repeat of succinyl-transferase J4N39_19215 PF12464 Maltose acetyltransferase J4N39_19230 PF00563 EAL domain J4N39_19230 PF00990 Diguanylate cyclase, GGDEF domain J4N39_19230 PF03707 Bacterial signalling protein N terminal repeat J4N39_19230 PF13188 PAS domain J4N39_19235 PF00149 Calcineurin-like phosphoesterase J4N39_19235 PF02872 5'-nucleotidase, C-terminal domain J4N39_19245 PF00072 Response regulator receiver domain J4N39_19245 PF01584 CheW-like domain J4N39_19250 PF01243 Pyridoxamine 5'-phosphate oxidase J4N39_19255 PF06228 Haem utilisation ChuX/HutX J4N39_19260 PF03544 Gram-negative bacterial TonB protein C-terminal J4N39_19265 PF01618 MotA/TolQ/ExbB proton channel family J4N39_19270 PF02472 Biopolymer transport protein ExbD/TolR J4N39_19280 PF01032 FecCD transport family J4N39_19285 PF00005 ABC transporter J4N39_19325 PF01202 Shikimate kinase J4N39_19335 PF01435 Peptidase family M48 J4N39_19340 PF04011 LemA family J4N39_19350 PF00873 AcrB/AcrD/AcrF family J4N39_19355 PF13533 Biotin-lipoyl like J4N39_19365 PF00248 Aldo/keto reductase family J4N39_19370 PF00128 Alpha amylase, catalytic domain J4N39_19375 PF11871 Domain of unknown function (DUF3391) J4N39_19375 PF01966 HD domain J4N39_19380 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N39_19380 PF00512 His Kinase A (phospho-acceptor) domain J4N39_19380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_19390 PF01810 LysE type translocator J4N39_19440 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ J4N39_19450 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA J4N39_19455 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system J4N39_19460 PF01810 LysE type translocator J4N39_19495 PF13673 Acetyltransferase (GNAT) domain J4N39_19495 PF04229 GrpB protein J4N39_19500 PF00300 Histidine phosphatase superfamily (branch 1) J4N39_19560 PF01609 Transposase DDE domain J4N39_19560 PF13808 DDE_Tnp_1-associated J4N39_19600 PF13302 Acetyltransferase (GNAT) domain J4N39_19645 PF12843 Putative quorum-sensing-regulated virulence factor J4N39_19655 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J4N39_19655 PF07685 CobB/CobQ-like glutamine amidotransferase domain J4N39_19660 PF00155 Aminotransferase class I and II J4N39_19665 PF17113 Regulatory signalling modulator protein AmpE J4N39_19665 PF03186 CobD/Cbib protein J4N39_19670 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N39_19675 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N39_19675 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J4N39_19680 PF06180 Cobalt chelatase (CbiK) J4N39_19685 PF11760 Cobalamin synthesis G N-terminal J4N39_19685 PF01890 Cobalamin synthesis G C-terminus J4N39_19685 PF11761 Cobalamin biosynthesis central region J4N39_19690 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N39_19695 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N39_19700 PF02570 Precorrin-8X methylmutase J4N39_19705 PF01888 CbiD J4N39_19710 PF00300 Histidine phosphatase superfamily (branch 1) J4N39_19720 PF00672 HAMP domain J4N39_19720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_19720 PF17200 Single Cache domain 2 J4N39_19725 PF03880 DbpA RNA binding domain J4N39_19725 PF00270 DEAD/DEAH box helicase J4N39_19725 PF00271 Helicase conserved C-terminal domain J4N39_19730 PF00773 RNB domain J4N39_19730 PF00575 S1 RNA binding domain J4N39_19730 PF08206 Ribonuclease B OB domain J4N39_19745 PF12849 PBP superfamily domain J4N39_19755 PF13649 Methyltransferase domain J4N39_19765 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N39_19765 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J4N39_19790 PF00360 Phytochrome region J4N39_19790 PF00990 Diguanylate cyclase, GGDEF domain J4N39_19790 PF01590 GAF domain J4N39_19790 PF00563 EAL domain J4N39_19795 PF02798 Glutathione S-transferase, N-terminal domain J4N39_19800 PF00209 Sodium:neurotransmitter symporter family J4N39_19805 PF16124 RecQ zinc-binding J4N39_19805 PF00570 HRDC domain J4N39_19805 PF00271 Helicase conserved C-terminal domain J4N39_19805 PF00270 DEAD/DEAH box helicase J4N39_19805 PF09382 RQC domain J4N39_19815 PF00512 His Kinase A (phospho-acceptor) domain J4N39_19815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_19815 PF00072 Response regulator receiver domain J4N39_19815 PF09308 LuxQ, periplasmic J4N39_19820 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J4N39_19820 PF00072 Response regulator receiver domain J4N39_19820 PF01627 Hpt domain J4N39_19820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_19820 PF00672 HAMP domain J4N39_19820 PF00512 His Kinase A (phospho-acceptor) domain J4N39_19830 PF00854 POT family J4N39_19845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_19845 PF00672 HAMP domain J4N39_19845 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J4N39_19845 PF00512 His Kinase A (phospho-acceptor) domain J4N39_19845 PF01627 Hpt domain J4N39_19845 PF00072 Response regulator receiver domain J4N39_19850 PF13533 Biotin-lipoyl like J4N39_19855 PF00873 AcrB/AcrD/AcrF family J4N39_19865 PF00072 Response regulator receiver domain J4N39_19870 PF01627 Hpt domain J4N39_19870 PF00512 His Kinase A (phospho-acceptor) domain J4N39_19870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_19870 PF00672 HAMP domain J4N39_19870 PF00072 Response regulator receiver domain J4N39_19870 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J4N39_19875 PF00005 ABC transporter J4N39_19875 PF17912 MalK OB fold domain J4N39_19875 PF03459 TOBE domain J4N39_19880 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_19885 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_19890 PF01547 Bacterial extracellular solute-binding protein J4N39_19895 PF16657 Maltogenic Amylase, C-terminal domain J4N39_19895 PF00128 Alpha amylase, catalytic domain J4N39_19900 PF00171 Aldehyde dehydrogenase family J4N39_19905 PF00440 Bacterial regulatory proteins, tetR family J4N39_19905 PF08359 YsiA-like protein, C-terminal region J4N39_19920 PF00293 NUDIX domain J4N39_19925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_19925 PF08447 PAS fold J4N39_19925 PF13426 PAS domain J4N39_19940 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 J4N39_19945 PF00990 Diguanylate cyclase, GGDEF domain J4N39_19945 PF08448 PAS fold J4N39_19950 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N39_19950 PF00005 ABC transporter J4N39_19965 PF00270 DEAD/DEAH box helicase J4N39_19965 PF00271 Helicase conserved C-terminal domain J4N39_19970 PF07690 Major Facilitator Superfamily J4N39_19975 PF13091 PLD-like domain J4N39_19980 PF00892 EamA-like transporter family J4N39_19985 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) J4N39_20010 PF00005 ABC transporter J4N39_20010 PF00664 ABC transporter transmembrane region J4N39_20025 PF03824 High-affinity nickel-transport protein J4N39_20050 PF07238 PilZ domain J4N39_20050 PF12945 Flagellar protein YcgR J4N39_20055 PF00313 'Cold-shock' DNA-binding domain J4N39_20060 PF13609 Gram-negative porin J4N39_20070 PF03606 C4-dicarboxylate anaerobic carrier J4N39_20075 PF00462 Glutaredoxin J4N39_20080 PF01734 Patatin-like phospholipase J4N39_20090 PF03707 Bacterial signalling protein N terminal repeat J4N39_20090 PF00563 EAL domain J4N39_20090 PF00990 Diguanylate cyclase, GGDEF domain J4N39_20095 PF07670 Nucleoside recognition J4N39_20100 PF01266 FAD dependent oxidoreductase J4N39_20100 PF16901 C-terminal domain of alpha-glycerophosphate oxidase J4N39_20105 PF00989 PAS fold J4N39_20105 PF00512 His Kinase A (phospho-acceptor) domain J4N39_20105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_20105 PF08447 PAS fold J4N39_20110 PF11849 Domain of unknown function (DUF3369) J4N39_20115 PF01022 Bacterial regulatory protein, arsR family J4N39_20120 PF07670 Nucleoside recognition J4N39_20125 PF07670 Nucleoside recognition J4N39_20145 PF00270 DEAD/DEAH box helicase J4N39_20145 PF00271 Helicase conserved C-terminal domain J4N39_20155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_20155 PF12729 Four helix bundle sensory module for signal transduction J4N39_20155 PF00672 HAMP domain J4N39_20170 PF00990 Diguanylate cyclase, GGDEF domain J4N39_20195 PF00583 Acetyltransferase (GNAT) family J4N39_20200 PF05762 VWA domain containing CoxE-like protein J4N39_20205 PF07728 AAA domain (dynein-related subfamily) J4N39_20205 PF12592 Protein of unknown function (DUF3763) J4N39_20205 PF17868 AAA lid domain J4N39_20220 PF00270 DEAD/DEAH box helicase J4N39_20220 PF00271 Helicase conserved C-terminal domain J4N39_20225 PF04336 Acyl carrier protein phosphodiesterase J4N39_20230 PF03222 Tryptophan/tyrosine permease family J4N39_20250 PF13419 Haloacid dehalogenase-like hydrolase J4N39_20260 PF17158 Membrane-associated sensor, integral membrane domain J4N39_20260 PF00990 Diguanylate cyclase, GGDEF domain J4N39_20275 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N39_20280 PF00156 Phosphoribosyl transferase domain J4N39_20290 PF08212 Lipocalin-like domain J4N39_20300 PF13419 Haloacid dehalogenase-like hydrolase J4N39_20315 PF05362 Lon protease (S16) C-terminal proteolytic domain J4N39_20315 PF13654 AAA domain J4N39_20320 PF02678 Pirin J4N39_20320 PF05726 Pirin C-terminal cupin domain J4N39_20325 PF06865 Pyrimidine/purine nucleoside phosphorylase J4N39_20330 PF00672 HAMP domain J4N39_20330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_20330 PF02743 Cache domain J4N39_20335 PF00563 EAL domain J4N39_20335 PF00990 Diguanylate cyclase, GGDEF domain J4N39_20335 PF00360 Phytochrome region J4N39_20335 PF01590 GAF domain J4N39_20350 PF07690 Major Facilitator Superfamily J4N39_20355 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family J4N39_20365 PF01227 GTP cyclohydrolase I J4N39_20370 PF02152 Dihydroneopterin aldolase J4N39_20395 PF01263 Aldose 1-epimerase J4N39_20405 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_20410 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_20415 PF00005 ABC transporter J4N39_20415 PF17912 MalK OB fold domain J4N39_20420 PF17200 Single Cache domain 2 J4N39_20420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_20420 PF00672 HAMP domain J4N39_20430 PF13419 Haloacid dehalogenase-like hydrolase J4N39_20440 PF02525 Flavodoxin-like fold J4N39_20445 PF03466 LysR substrate binding domain J4N39_20445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_20450 PF03313 Serine dehydratase alpha chain J4N39_20450 PF03315 Serine dehydratase beta chain J4N39_20455 PF00474 Sodium:solute symporter family J4N39_20460 PF07690 Major Facilitator Superfamily J4N39_20470 PF00583 Acetyltransferase (GNAT) family J4N39_20470 PF13508 Acetyltransferase (GNAT) domain J4N39_20480 PF03544 Gram-negative bacterial TonB protein C-terminal J4N39_20485 PF02472 Biopolymer transport protein ExbD/TolR J4N39_20490 PF01618 MotA/TolQ/ExbB proton channel family J4N39_20495 PF01618 MotA/TolQ/ExbB proton channel family J4N39_20505 PF07715 TonB-dependent Receptor Plug Domain J4N39_20505 PF00593 TonB dependent receptor J4N39_20505 PF07660 Secretin and TonB N terminus short domain J4N39_20510 PF00486 Transcriptional regulatory protein, C terminal J4N39_20510 PF00072 Response regulator receiver domain J4N39_20515 PF00990 Diguanylate cyclase, GGDEF domain J4N39_20530 PF00501 AMP-binding enzyme J4N39_20530 PF13193 AMP-binding enzyme C-terminal domain J4N39_20535 PF16874 Glycosyl hydrolase family 36 C-terminal domain J4N39_20535 PF16875 Glycosyl hydrolase family 36 N-terminal domain J4N39_20550 PF01451 Low molecular weight phosphotyrosine protein phosphatase J4N39_20565 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J4N39_20565 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J4N39_20565 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J4N39_20595 PF12464 Maltose acetyltransferase J4N39_20595 PF00132 Bacterial transferase hexapeptide (six repeats) J4N39_20600 PF00535 Glycosyl transferase family 2 J4N39_20605 PF13614 AAA domain J4N39_20605 PF13807 G-rich domain on putative tyrosine kinase J4N39_20605 PF02706 Chain length determinant protein J4N39_20620 PF02397 Bacterial sugar transferase J4N39_20625 PF03793 PASTA domain J4N39_20625 PF00069 Protein kinase domain J4N39_20630 PF01226 Formate/nitrite transporter J4N39_20645 PF00149 Calcineurin-like phosphoesterase J4N39_20645 PF02872 5'-nucleotidase, C-terminal domain J4N39_20655 PF12706 Beta-lactamase superfamily domain J4N39_20660 PF00440 Bacterial regulatory proteins, tetR family J4N39_20660 PF08361 MAATS-type transcriptional repressor, C-terminal region J4N39_20680 PF00704 Glycosyl hydrolases family 18 J4N39_20680 PF08329 Chitinase A, N-terminal domain J4N39_20685 PF14310 Fibronectin type III-like domain J4N39_20685 PF00933 Glycosyl hydrolase family 3 N terminal domain J4N39_20685 PF01915 Glycosyl hydrolase family 3 C-terminal domain J4N39_20700 PF02311 AraC-like ligand binding domain J4N39_20700 PF12833 Helix-turn-helix domain J4N39_20705 PF02264 LamB porin J4N39_20740 PF00563 EAL domain J4N39_20740 PF00990 Diguanylate cyclase, GGDEF domain J4N39_20740 PF03707 Bacterial signalling protein N terminal repeat J4N39_20750 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N39_20750 PF00005 ABC transporter J4N39_20755 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N39_20755 PF00005 ABC transporter J4N39_20760 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N39_20760 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_20765 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_20770 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N39_20790 PF00892 EamA-like transporter family J4N39_20815 PF17910 FeoB cytosolic helical domain J4N39_20815 PF02421 Ferrous iron transport protein B J4N39_20815 PF07670 Nucleoside recognition J4N39_20815 PF07664 Ferrous iron transport protein B C terminus J4N39_20830 PF00171 Aldehyde dehydrogenase family J4N39_20840 PF00012 Hsp70 protein J4N39_20855 PF00005 ABC transporter J4N39_20860 PF01032 FecCD transport family J4N39_20865 PF01032 FecCD transport family J4N39_20875 PF00593 TonB dependent receptor J4N39_20875 PF07715 TonB-dependent Receptor Plug Domain J4N39_20880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_20880 PF03466 LysR substrate binding domain J4N39_20885 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_20890 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_20895 PF00005 ABC transporter J4N39_20895 PF17912 MalK OB fold domain J4N39_20900 PF01609 Transposase DDE domain J4N39_20900 PF13808 DDE_Tnp_1-associated J4N39_20905 PF00005 ABC transporter J4N39_20905 PF17912 MalK OB fold domain J4N39_20905 PF03459 TOBE domain J4N39_20915 PF01554 MatE J4N39_20920 PF03466 LysR substrate binding domain J4N39_20920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_20925 PF01554 MatE J4N39_20930 PF03466 LysR substrate binding domain J4N39_20930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_20950 PF00950 ABC 3 transport family J4N39_20955 PF00005 ABC transporter J4N39_20990 PF00990 Diguanylate cyclase, GGDEF domain J4N39_21050 PF01557 Fumarylacetoacetate (FAA) hydrolase family J4N39_21055 PF13476 AAA domain J4N39_21060 PF12320 Type 5 capsule protein repressor C-terminal domain J4N39_21060 PF00149 Calcineurin-like phosphoesterase J4N39_21080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_21080 PF00512 His Kinase A (phospho-acceptor) domain J4N39_21080 PF00072 Response regulator receiver domain J4N39_21080 PF09308 LuxQ, periplasmic J4N39_21090 PF03707 Bacterial signalling protein N terminal repeat J4N39_21090 PF00563 EAL domain J4N39_21090 PF00990 Diguanylate cyclase, GGDEF domain J4N39_21105 PF01145 SPFH domain / Band 7 family J4N39_21110 PF01545 Cation efflux family J4N39_21110 PF16916 Dimerisation domain of Zinc Transporter J4N39_21115 PF07969 Amidohydrolase family J4N39_21120 PF03466 LysR substrate binding domain J4N39_21120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_21130 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_21135 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_21135 PF14785 Maltose transport system permease protein MalF P2 domain J4N39_21140 PF01547 Bacterial extracellular solute-binding protein J4N39_21145 PF08402 TOBE domain J4N39_21145 PF00005 ABC transporter J4N39_21175 PF10614 Type VIII secretion system (T8SS), CsgF protein J4N39_21180 PF03783 Curli production assembly/transport component CsgG J4N39_21185 PF00196 Bacterial regulatory proteins, luxR family J4N39_21225 PF00672 HAMP domain J4N39_21225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_21225 PF02743 Cache domain J4N39_21230 PF07726 ATPase family associated with various cellular activities (AAA) J4N39_21230 PF17863 AAA lid domain J4N39_21235 PF01882 Protein of unknown function DUF58 J4N39_21245 PF07584 Aerotolerance regulator N-terminal J4N39_21245 PF00092 von Willebrand factor type A domain J4N39_21250 PF13519 von Willebrand factor type A domain J4N39_21260 PF00465 Iron-containing alcohol dehydrogenase J4N39_21265 PF00675 Insulinase (Peptidase family M16) J4N39_21265 PF05193 Peptidase M16 inactive domain J4N39_21270 PF00990 Diguanylate cyclase, GGDEF domain J4N39_21275 PF07690 Major Facilitator Superfamily J4N39_21280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_21280 PF03466 LysR substrate binding domain J4N39_21305 PF00793 DAHP synthetase I family J4N39_21315 PF01810 LysE type translocator J4N39_21335 PF03466 LysR substrate binding domain J4N39_21335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_21340 PF00106 short chain dehydrogenase J4N39_21345 PF01292 Prokaryotic cytochrome b561 J4N39_21350 PF00245 Alkaline phosphatase J4N39_21370 PF08241 Methyltransferase domain J4N39_21395 PF01979 Amidohydrolase family J4N39_21410 PF00392 Bacterial regulatory proteins, gntR family J4N39_21410 PF00155 Aminotransferase class I and II J4N39_21415 PF01464 Transglycosylase SLT domain J4N39_21415 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N39_21425 PF01042 Endoribonuclease L-PSP J4N39_21430 PF00561 alpha/beta hydrolase fold J4N39_21440 PF02311 AraC-like ligand binding domain J4N39_21440 PF12833 Helix-turn-helix domain J4N39_21465 PF05990 Alpha/beta hydrolase of unknown function (DUF900) J4N39_21480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_21480 PF03466 LysR substrate binding domain J4N39_21485 PF02652 L-lactate permease J4N39_21490 PF02754 Cysteine-rich domain J4N39_21495 PF13183 4Fe-4S dicluster domain J4N39_21495 PF11870 Domain of unknown function (DUF3390) J4N39_21495 PF02589 LUD domain J4N39_21500 PF02589 LUD domain J4N39_21505 PF13183 4Fe-4S dicluster domain J4N39_21505 PF01565 FAD binding domain J4N39_21505 PF02913 FAD linked oxidases, C-terminal domain J4N39_21510 PF00765 Autoinducer synthase J4N39_21520 PF03472 Autoinducer binding domain J4N39_21520 PF00196 Bacterial regulatory proteins, luxR family J4N39_21535 PF00294 pfkB family carbohydrate kinase J4N39_21540 PF03928 Haem-degrading J4N39_21545 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J4N39_21545 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J4N39_21550 PF05524 PEP-utilising enzyme, N-terminal J4N39_21550 PF00391 PEP-utilising enzyme, mobile domain J4N39_21550 PF02896 PEP-utilising enzyme, TIM barrel domain J4N39_21550 PF00381 PTS HPr component phosphorylation site J4N39_21550 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N39_21560 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N39_21565 PF01228 Glycine radical J4N39_21565 PF02901 Pyruvate formate lyase-like J4N39_21570 PF04055 Radical SAM superfamily J4N39_21575 PF01370 NAD dependent epimerase/dehydratase family J4N39_21580 PF00923 Transaldolase/Fructose-6-phosphate aldolase J4N39_21585 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N39_21590 PF12833 Helix-turn-helix domain J4N39_21600 PF01238 Phosphomannose isomerase type I J4N39_21605 PF03595 Voltage-dependent anion channel J4N39_21610 PF01022 Bacterial regulatory protein, arsR family J4N39_21615 PF12848 ABC transporter J4N39_21615 PF00005 ABC transporter J4N39_21620 PF03594 Benzoate membrane transport protein J4N39_21625 PF07883 Cupin domain J4N39_21625 PF01381 Helix-turn-helix J4N39_21630 PF00293 NUDIX domain J4N39_21660 PF01914 MarC family integral membrane protein J4N39_21665 PF03466 LysR substrate binding domain J4N39_21665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_21675 PF01527 Transposase J4N39_21690 PF05231 MASE1 J4N39_21690 PF00563 EAL domain J4N39_21710 PF17137 Domain of unknown function (DUF5110) J4N39_21710 PF01055 Glycosyl hydrolases family 31 J4N39_21710 PF13802 Galactose mutarotase-like J4N39_21710 PF16338 Domain of unknown function (DUF4968) J4N39_21715 PF07702 UTRA domain J4N39_21715 PF00392 Bacterial regulatory proteins, gntR family J4N39_21720 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N39_21720 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N39_21725 PF02378 Phosphotransferase system, EIIC J4N39_21725 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N39_21725 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N39_21730 PF09261 Alpha mannosidase middle domain J4N39_21730 PF07748 Glycosyl hydrolases family 38 C-terminal domain J4N39_21730 PF01074 Glycosyl hydrolases family 38 N-terminal domain J4N39_21735 PF02595 Glycerate kinase family J4N39_21740 PF01238 Phosphomannose isomerase type I J4N39_21765 PF00582 Universal stress protein family J4N39_21780 PF02416 mttA/Hcf106 family J4N39_21785 PF02416 mttA/Hcf106 family J4N39_21790 PF00902 Sec-independent protein translocase protein (TatC) J4N39_21800 PF17151 Periplasmic sensor domain J4N39_21800 PF00990 Diguanylate cyclase, GGDEF domain J4N39_21820 PF01297 Zinc-uptake complex component A periplasmic J4N39_21825 PF00005 ABC transporter J4N39_21830 PF00950 ABC 3 transport family J4N39_21840 PF00593 TonB dependent receptor J4N39_21840 PF07715 TonB-dependent Receptor Plug Domain J4N39_21845 PF00141 Peroxidase J4N39_21855 PF16916 Dimerisation domain of Zinc Transporter J4N39_21855 PF01545 Cation efflux family J4N39_21885 PF01081 KDPG and KHG aldolase J4N39_21890 PF00294 pfkB family carbohydrate kinase J4N39_21895 PF07883 Cupin domain J4N39_21900 PF05426 Alginate lyase J4N39_21900 PF07940 Heparinase II/III-like protein J4N39_21905 PF05426 Alginate lyase J4N39_21905 PF07940 Heparinase II/III-like protein J4N39_21915 PF00072 Response regulator receiver domain J4N39_21915 PF00990 Diguanylate cyclase, GGDEF domain J4N39_21920 PF00474 Sodium:solute symporter family J4N39_21925 PF16874 Glycosyl hydrolase family 36 C-terminal domain J4N39_21925 PF16875 Glycosyl hydrolase family 36 N-terminal domain J4N39_21930 PF00356 Bacterial regulatory proteins, lacI family J4N39_21935 PF03466 LysR substrate binding domain J4N39_21935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_21940 PF00144 Beta-lactamase J4N39_21950 PF07883 Cupin domain J4N39_21955 PF13609 Gram-negative porin J4N39_21960 PF00202 Aminotransferase class-III J4N39_21965 PF01557 Fumarylacetoacetate (FAA) hydrolase family J4N39_21975 PF01547 Bacterial extracellular solute-binding protein J4N39_21990 PF00109 Beta-ketoacyl synthase, N-terminal domain J4N39_21990 PF02801 Beta-ketoacyl synthase, C-terminal domain J4N39_21990 PF08240 Alcohol dehydrogenase GroES-like domain J4N39_21990 PF14765 Polyketide synthase dehydratase J4N39_21990 PF00550 Phosphopantetheine attachment site J4N39_21990 PF16197 Ketoacyl-synthetase C-terminal extension J4N39_21990 PF08659 KR domain J4N39_21990 PF00698 Acyl transferase domain J4N39_22000 PF16657 Maltogenic Amylase, C-terminal domain J4N39_22000 PF00128 Alpha amylase, catalytic domain J4N39_22005 PF03466 LysR substrate binding domain J4N39_22005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_22020 PF07729 FCD domain J4N39_22020 PF00392 Bacterial regulatory proteins, gntR family J4N39_22030 PF07729 FCD domain J4N39_22030 PF00392 Bacterial regulatory proteins, gntR family J4N39_22040 PF03401 Tripartite tricarboxylate transporter family receptor J4N39_22050 PF01970 Tripartite tricarboxylate transporter TctA family J4N39_22070 PF01497 Periplasmic binding protein J4N39_22090 PF00106 short chain dehydrogenase J4N39_22095 PF04244 Deoxyribodipyrimidine photo-lyase-related protein J4N39_22100 PF03441 FAD binding domain of DNA photolyase J4N39_22100 PF00875 DNA photolyase J4N39_22105 PF01966 HD domain J4N39_22110 PF00356 Bacterial regulatory proteins, lacI family J4N39_22115 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J4N39_22115 PF13378 Enolase C-terminal domain-like J4N39_22125 PF00563 EAL domain J4N39_22125 PF00990 Diguanylate cyclase, GGDEF domain J4N39_22125 PF03707 Bacterial signalling protein N terminal repeat J4N39_22145 PF00571 CBS domain J4N39_22150 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J4N39_22150 PF14579 Helix-hairpin-helix motif J4N39_22150 PF02811 PHP domain J4N39_22150 PF07733 Bacterial DNA polymerase III alpha NTPase domain J4N39_22150 PF00929 Exonuclease J4N39_22150 PF11490 DNA polymerase III polC-type N-terminus II J4N39_22155 PF00801 PKD domain J4N39_22155 PF02013 Cellulose or protein binding domain J4N39_22155 PF00553 Cellulose binding domain J4N39_22155 PF02927 Cellulase N-terminal ig-like domain J4N39_22155 PF00759 Glycosyl hydrolase family 9 J4N39_22160 PF00474 Sodium:solute symporter family J4N39_22165 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP J4N39_22165 PF12557 Cob(I)alamin adenosyltransferase N terminal J4N39_22175 PF07963 Prokaryotic N-terminal methylation motif J4N39_22190 PF08787 Alginate lyase J4N39_22195 PF02310 B12 binding domain J4N39_22195 PF02607 B12 binding domain J4N39_22195 PF02965 Vitamin B12 dependent methionine synthase, activation domain J4N39_22195 PF00809 Pterin binding enzyme J4N39_22195 PF02574 Homocysteine S-methyltransferase J4N39_22200 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J4N39_22200 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J4N39_22210 PF02687 FtsX-like permease family J4N39_22210 PF12704 MacB-like periplasmic core domain J4N39_22215 PF00005 ABC transporter J4N39_22220 PF02378 Phosphotransferase system, EIIC J4N39_22220 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N39_22220 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N39_22225 PF01232 Mannitol dehydrogenase Rossmann domain J4N39_22225 PF08125 Mannitol dehydrogenase C-terminal domain J4N39_22230 PF05068 Mannitol repressor J4N39_22235 PF13419 Haloacid dehalogenase-like hydrolase J4N39_22255 PF00455 DeoR C terminal sensor domain J4N39_22255 PF08220 DeoR-like helix-turn-helix domain J4N39_22260 PF01380 SIS domain J4N39_22265 PF03781 Sulfatase-modifying factor enzyme 1 J4N39_22275 PF00925 GTP cyclohydrolase II J4N39_22305 PF13401 AAA domain J4N39_22305 PF11426 Tn7 transposition regulator TnsC J4N39_22310 PF06527 TniQ J4N39_22310 PF15978 Tn7-like transposition protein D J4N39_22345 PF00226 DnaJ domain J4N39_22345 PF01556 DnaJ C terminal domain J4N39_22365 PF00360 Phytochrome region J4N39_22365 PF00563 EAL domain J4N39_22365 PF00990 Diguanylate cyclase, GGDEF domain J4N39_22365 PF01590 GAF domain J4N39_22400 PF03466 LysR substrate binding domain J4N39_22400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_22420 PF01238 Phosphomannose isomerase type I J4N39_22425 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N39_22425 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N39_22430 PF12833 Helix-turn-helix domain J4N39_22435 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N39_22435 PF00381 PTS HPr component phosphorylation site J4N39_22435 PF02896 PEP-utilising enzyme, TIM barrel domain J4N39_22435 PF00391 PEP-utilising enzyme, mobile domain J4N39_22435 PF05524 PEP-utilising enzyme, N-terminal J4N39_22440 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N39_22465 PF01238 Phosphomannose isomerase type I J4N39_22470 PF12729 Four helix bundle sensory module for signal transduction J4N39_22470 PF00672 HAMP domain J4N39_22470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_22475 PF02264 LamB porin J4N39_22480 PF04041 beta-1,4-mannooligosaccharide phosphorylase J4N39_22485 PF04041 beta-1,4-mannooligosaccharide phosphorylase J4N39_22490 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J4N39_22490 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J4N39_22490 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J4N39_22490 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J4N39_22495 PF00356 Bacterial regulatory proteins, lacI family J4N39_22495 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family J4N39_22500 PF00005 ABC transporter J4N39_22500 PF17912 MalK OB fold domain J4N39_22515 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_22520 PF00528 Binding-protein-dependent transport system inner membrane component J4N39_22540 PF03466 LysR substrate binding domain J4N39_22540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_22560 PF00582 Universal stress protein family J4N39_22565 PF03616 Sodium/glutamate symporter J4N39_22595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_22595 PF03466 LysR substrate binding domain J4N39_22600 PF01810 LysE type translocator J4N39_22605 PF03466 LysR substrate binding domain J4N39_22605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_22615 PF00440 Bacterial regulatory proteins, tetR family J4N39_22615 PF08360 QacR-like protein, C-terminal region J4N39_22640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_22640 PF03466 LysR substrate binding domain J4N39_22645 PF14497 Glutathione S-transferase, C-terminal domain J4N39_22645 PF02798 Glutathione S-transferase, N-terminal domain J4N39_22655 PF00196 Bacterial regulatory proteins, luxR family J4N39_22655 PF00072 Response regulator receiver domain J4N39_22660 PF17409 MoaF C-terminal domain J4N39_22660 PF10703 MoaF N-terminal domain J4N39_22670 PF12804 MobA-like NTP transferase domain J4N39_22670 PF00132 Bacterial transferase hexapeptide (six repeats) J4N39_22685 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J4N39_22685 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain J4N39_22690 PF02321 Outer membrane efflux protein J4N39_22695 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N39_22700 PF00873 AcrB/AcrD/AcrF family J4N39_22705 PF00072 Response regulator receiver domain J4N39_22705 PF00486 Transcriptional regulatory protein, C terminal J4N39_22710 PF08521 Two-component sensor kinase N-terminal J4N39_22710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_22710 PF00512 His Kinase A (phospho-acceptor) domain J4N39_22725 PF00106 short chain dehydrogenase J4N39_22730 PF12833 Helix-turn-helix domain J4N39_22730 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term J4N39_22735 PF03466 LysR substrate binding domain J4N39_22735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N39_22770 PF02378 Phosphotransferase system, EIIC J4N39_22770 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N39_22775 PF00294 pfkB family carbohydrate kinase J4N39_22780 PF00381 PTS HPr component phosphorylation site J4N39_22780 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N39_22785 PF00356 Bacterial regulatory proteins, lacI family J4N39_22785 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family J4N39_22790 PF00474 Sodium:solute symporter family J4N39_22800 PF01619 Proline dehydrogenase J4N39_22800 PF14850 DNA-binding domain of Proline dehydrogenase J4N39_22800 PF18327 Proline utilization A proline dehydrogenase N-terminal domain J4N39_22800 PF00171 Aldehyde dehydrogenase family J4N39_22805 PF12833 Helix-turn-helix domain J4N39_22830 PF00950 ABC 3 transport family J4N39_22835 PF00950 ABC 3 transport family J4N39_22840 PF00005 ABC transporter J4N39_22845 PF01297 Zinc-uptake complex component A periplasmic J4N39_22855 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region J4N39_22855 PF01243 Pyridoxamine 5'-phosphate oxidase J4N39_22860 PF00529 HlyD membrane-fusion protein of T1SS J4N39_22875 PF00664 ABC transporter transmembrane region J4N39_22875 PF00005 ABC transporter J4N39_22875 PF03412 Peptidase C39 family J4N39_22890 PF00072 Response regulator receiver domain J4N39_22890 PF00486 Transcriptional regulatory protein, C terminal J4N39_22900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_22900 PF00672 HAMP domain J4N39_22900 PF02743 Cache domain J4N39_22905 PF00072 Response regulator receiver domain J4N39_22905 PF01339 CheB methylesterase J4N39_22910 PF03975 CheD chemotactic sensory transduction J4N39_22915 PF01739 CheR methyltransferase, SAM binding domain J4N39_22915 PF03705 CheR methyltransferase, all-alpha domain J4N39_22920 PF00672 HAMP domain J4N39_22920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N39_22920 PF02203 Tar ligand binding domain homologue J4N39_22925 PF01584 CheW-like domain J4N39_22930 PF01584 CheW-like domain J4N39_22935 PF01584 CheW-like domain J4N39_22935 PF09078 CheY binding J4N39_22935 PF02895 Signal transducing histidine kinase, homodimeric domain J4N39_22935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N39_22935 PF01627 Hpt domain J4N39_22940 PF00072 Response regulator receiver domain J4N39_22950 PF13718 GNAT acetyltransferase 2 J4N39_22950 PF05127 Helicase