locus-tag class description J4N41_00005 PF00308 Bacterial dnaA protein J4N41_00005 PF08299 Bacterial dnaA protein helix-turn-helix J4N41_00005 PF11638 DnaA N-terminal domain J4N41_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain J4N41_00010 PF02767 DNA polymerase III beta subunit, central domain J4N41_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain J4N41_00015 PF02463 RecF/RecN/SMC N terminal domain J4N41_00020 PF01751 Toprim domain J4N41_00020 PF18053 DNA gyrase B subunit insert domain J4N41_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_00020 PF00204 DNA gyrase B J4N41_00020 PF00986 DNA gyrase B subunit, carboxyl terminus J4N41_00025 PF00011 Hsp20/alpha crystallin family J4N41_00030 PF00155 Aminotransferase class I and II J4N41_00035 PF05746 DALR anticodon binding domain J4N41_00035 PF02092 Glycyl-tRNA synthetase beta subunit J4N41_00040 PF02091 Glycyl-tRNA synthetase alpha subunit J4N41_00045 PF01169 Uncharacterized protein family UPF0016 J4N41_00055 PF01206 Sulfurtransferase TusA J4N41_00065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_00065 PF03466 LysR substrate binding domain J4N41_00070 PF00107 Zinc-binding dehydrogenase J4N41_00070 PF08240 Alcohol dehydrogenase GroES-like domain J4N41_00075 PF00291 Pyridoxal-phosphate dependent enzyme J4N41_00075 PF00585 C-terminal regulatory domain of Threonine dehydratase J4N41_00080 PF00920 Dehydratase family J4N41_00085 PF01063 Amino-transferase class IV J4N41_00095 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J4N41_00095 PF00205 Thiamine pyrophosphate enzyme, central domain J4N41_00095 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J4N41_00100 PF01078 Magnesium chelatase, subunit ChlI J4N41_00100 PF13335 Magnesium chelatase, subunit ChlI C-terminal J4N41_00120 PF00589 Phage integrase family J4N41_00120 PF02899 Phage integrase, N-terminal SAM-like domain J4N41_00135 PF00004 ATPase family associated with various cellular activities (AAA) J4N41_00140 PF04851 Type III restriction enzyme, res subunit J4N41_00205 PF01553 Acyltransferase J4N41_00210 PF01323 DSBA-like thioredoxin domain J4N41_00215 PF01636 Phosphotransferase enzyme family J4N41_00220 PF13746 4Fe-4S dicluster domain J4N41_00220 PF12801 4Fe-4S binding domain J4N41_00220 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase J4N41_00225 PF06288 Protein of unknown function (DUF1040) J4N41_00235 PF07070 SpoOM protein J4N41_00240 PF03006 Haemolysin-III related J4N41_00250 PF02386 Cation transport protein J4N41_00255 PF02080 TrkA-C domain J4N41_00255 PF02254 TrkA-N domain J4N41_00260 PF01189 16S rRNA methyltransferase RsmB/F J4N41_00260 PF01029 NusB family J4N41_00265 PF02911 Formyl transferase, C-terminal domain J4N41_00265 PF00551 Formyl transferase J4N41_00270 PF01327 Polypeptide deformylase J4N41_00275 PF17782 DprA winged helix domain J4N41_00275 PF02481 DNA recombination-mediator protein A J4N41_00280 PF04361 Protein of unknown function (DUF494) J4N41_00285 PF01396 Topoisomerase DNA binding C4 zinc finger J4N41_00290 PF02222 ATP-grasp domain J4N41_00290 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain J4N41_00295 PF00731 AIR carboxylase J4N41_00300 PF01300 Telomere recombination J4N41_00305 PF01218 Coproporphyrinogen III oxidase J4N41_00310 PF18317 Shikimate 5'-dehydrogenase C-terminal domain J4N41_00310 PF01488 Shikimate / quinate 5-dehydrogenase J4N41_00310 PF08501 Shikimate dehydrogenase substrate binding domain J4N41_00315 PF07369 Protein of unknown function (DUF1488) J4N41_00320 PF00132 Bacterial transferase hexapeptide (six repeats) J4N41_00385 PF00962 Adenosine/AMP deaminase J4N41_00390 PF13188 PAS domain J4N41_00390 PF03707 Bacterial signalling protein N terminal repeat J4N41_00390 PF00563 EAL domain J4N41_00390 PF00990 Diguanylate cyclase, GGDEF domain J4N41_00395 PF02954 Bacterial regulatory protein, Fis family J4N41_00395 PF00072 Response regulator receiver domain J4N41_00395 PF00158 Sigma-54 interaction domain J4N41_00400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_00400 PF00512 His Kinase A (phospho-acceptor) domain J4N41_00400 PF00989 PAS fold J4N41_00405 PF03951 Glutamine synthetase, beta-Grasp domain J4N41_00405 PF00120 Glutamine synthetase, catalytic domain J4N41_00410 PF00679 Elongation factor G C-terminus J4N41_00410 PF00009 Elongation factor Tu GTP binding domain J4N41_00410 PF03144 Elongation factor Tu domain 2 J4N41_00425 PF03631 Virulence factor BrkB J4N41_00430 PF02580 D-Tyr-tRNA(Tyr) deacylase J4N41_00435 PF00583 Acetyltransferase (GNAT) family J4N41_00435 PF09500 Putative thioesterase (yiiD_Cterm) J4N41_00445 PF01293 Phosphoenolpyruvate carboxykinase J4N41_00450 PF01430 Hsp33 protein J4N41_00455 PF01479 S4 domain J4N41_00460 PF11356 Type II secretion system protein C J4N41_00465 PF03958 Bacterial type II/III secretion system short domain J4N41_00465 PF00263 Bacterial type II and III secretion system protein J4N41_00470 PF00437 Type II/IV secretion system protein J4N41_00475 PF00482 Type II secretion system (T2SS), protein F J4N41_00480 PF07963 Prokaryotic N-terminal methylation motif J4N41_00480 PF08334 Type II secretion system (T2SS), protein G J4N41_00485 PF12019 Type II transport protein GspH J4N41_00490 PF07963 Prokaryotic N-terminal methylation motif J4N41_00490 PF02501 Type II secretion system (T2SS), protein I J4N41_00495 PF11612 Type II secretion system (T2SS), protein J J4N41_00495 PF07963 Prokaryotic N-terminal methylation motif J4N41_00500 PF03934 Type II secretion system (T2SS), protein K J4N41_00505 PF12693 GspL periplasmic domain J4N41_00505 PF05134 Type II secretion system (T2SS), protein L J4N41_00510 PF04612 Type II secretion system (T2SS), protein M J4N41_00515 PF01203 Type II secretion system (T2SS), protein N J4N41_00520 PF00672 HAMP domain J4N41_00520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_00520 PF00512 His Kinase A (phospho-acceptor) domain J4N41_00525 PF00486 Transcriptional regulatory protein, C terminal J4N41_00525 PF00072 Response regulator receiver domain J4N41_00530 PF01272 Transcription elongation factor, GreA/GreB, C-term J4N41_00530 PF03449 Transcription elongation factor, N-terminal J4N41_00540 PF17674 HHH domain J4N41_00540 PF16921 Tex protein YqgF-like domain J4N41_00540 PF09371 Tex-like protein N-terminal domain J4N41_00540 PF00575 S1 RNA binding domain J4N41_00550 PF00561 alpha/beta hydrolase fold J4N41_00555 PF00156 Phosphoribosyl transferase domain J4N41_00560 PF01521 Iron-sulphur cluster biosynthesis J4N41_00560 PF01106 NifU-like domain J4N41_00565 PF00293 NUDIX domain J4N41_00570 PF00459 Inositol monophosphatase family J4N41_00575 PF00156 Phosphoribosyl transferase domain J4N41_00580 PF01138 3' exoribonuclease family, domain 1 J4N41_00580 PF03725 3' exoribonuclease family, domain 2 J4N41_00585 PF03755 YicC-like family, N-terminal region J4N41_00585 PF08340 Domain of unknown function (DUF1732) J4N41_00590 PF00860 Permease family J4N41_00595 PF00625 Guanylate kinase J4N41_00600 PF01192 RNA polymerase Rpb6 J4N41_00605 PF13291 ACT domain J4N41_00605 PF04607 Region found in RelA / SpoT proteins J4N41_00605 PF02824 TGS domain J4N41_00610 PF00588 SpoU rRNA Methylase family J4N41_00610 PF12105 SpoU, rRNA methylase, C-terminal J4N41_00615 PF00270 DEAD/DEAH box helicase J4N41_00615 PF00271 Helicase conserved C-terminal domain J4N41_00615 PF17191 RecG wedge domain J4N41_00620 PF03279 Bacterial lipid A biosynthesis acyltransferase J4N41_00625 PF03279 Bacterial lipid A biosynthesis acyltransferase J4N41_00630 PF00440 Bacterial regulatory proteins, tetR family J4N41_00635 PF04127 DNA / pantothenate metabolism flavoprotein J4N41_00635 PF02441 Flavoprotein J4N41_00640 PF04002 RadC-like JAB domain J4N41_00645 PF00830 Ribosomal L28 family J4N41_00650 PF00471 Ribosomal protein L33 J4N41_00660 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain J4N41_00660 PF06827 Zinc finger found in FPG and IleRS J4N41_00660 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain J4N41_00665 PF01467 Cytidylyltransferase-like J4N41_00670 PF01075 Glycosyltransferase family 9 (heptosyltransferase) J4N41_00675 PF00535 Glycosyl transferase family 2 J4N41_00680 PF01075 Glycosyltransferase family 9 (heptosyltransferase) J4N41_00690 PF00175 Oxidoreductase NAD-binding domain J4N41_00690 PF00970 Oxidoreductase FAD-binding domain J4N41_00690 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N41_00695 PF00483 Nucleotidyl transferase J4N41_00700 PF16363 GDP-mannose 4,6 dehydratase J4N41_00705 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J4N41_00710 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase J4N41_00735 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) J4N41_00735 PF00534 Glycosyl transferases group 1 J4N41_00740 PF04488 Glycosyltransferase sugar-binding region containing DXD motif J4N41_00750 PF01075 Glycosyltransferase family 9 (heptosyltransferase) J4N41_00755 PF14602 Hexapeptide repeat of succinyl-transferase J4N41_00755 PF00132 Bacterial transferase hexapeptide (six repeats) J4N41_00755 PF12464 Maltose acetyltransferase J4N41_00765 PF04932 O-Antigen ligase J4N41_00770 PF00534 Glycosyl transferases group 1 J4N41_00775 PF01370 NAD dependent epimerase/dehydratase family J4N41_00780 PF16363 GDP-mannose 4,6 dehydratase J4N41_00785 PF00483 Nucleotidyl transferase J4N41_00790 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase J4N41_00795 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J4N41_00810 PF00005 ABC transporter J4N41_00810 PF00664 ABC transporter transmembrane region J4N41_00815 PF02719 Polysaccharide biosynthesis protein J4N41_00820 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J4N41_00825 PF02350 UDP-N-acetylglucosamine 2-epimerase J4N41_00830 PF03102 NeuB family J4N41_00830 PF08666 SAF domain J4N41_00845 PF00483 Nucleotidyl transferase J4N41_00850 PF02348 Cytidylyltransferase J4N41_00885 PF00535 Glycosyl transferase family 2 J4N41_00900 PF02397 Bacterial sugar transferase J4N41_00905 PF13091 PLD-like domain J4N41_00910 PF03099 Biotin/lipoate A/B protein ligase family J4N41_00910 PF08279 HTH domain J4N41_00910 PF02237 Biotin protein ligase C terminal domain J4N41_00915 PF01565 FAD binding domain J4N41_00915 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain J4N41_00925 PF00455 DeoR C terminal sensor domain J4N41_00925 PF08220 DeoR-like helix-turn-helix domain J4N41_00940 PF00166 Chaperonin 10 Kd subunit J4N41_00945 PF00118 TCP-1/cpn60 chaperonin family J4N41_00950 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J4N41_00950 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J4N41_00950 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J4N41_00955 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded J4N41_00960 PF06005 Cell division protein ZapB J4N41_00965 PF02219 Methylenetetrahydrofolate reductase J4N41_00970 PF03447 Homoserine dehydrogenase, NAD binding domain J4N41_00970 PF00742 Homoserine dehydrogenase J4N41_00970 PF00696 Amino acid kinase family J4N41_00975 PF01053 Cys/Met metabolism PLP-dependent enzyme J4N41_00980 PF01340 Met Apo-repressor, MetJ J4N41_00985 PF00390 Malic enzyme, N-terminal domain J4N41_00985 PF03949 Malic enzyme, NAD binding domain J4N41_00990 PF01197 Ribosomal protein L31 J4N41_00995 PF00271 Helicase conserved C-terminal domain J4N41_00995 PF17764 3′ DNA-binding domain (3′BD) J4N41_00995 PF18074 Primosomal protein N C-terminal domain J4N41_00995 PF18319 PriA DNA helicase Cys-rich region (CRR) domain J4N41_00995 PF00270 DEAD/DEAH box helicase J4N41_01000 PF00356 Bacterial regulatory proteins, lacI family J4N41_01005 PF05036 Sporulation related domain J4N41_01010 PF00227 Proteasome subunit J4N41_01015 PF00004 ATPase family associated with various cellular activities (AAA) J4N41_01015 PF07724 AAA domain (Cdc48 subfamily) J4N41_01020 PF13006 Insertion element 4 transposase N-terminal J4N41_01020 PF01609 Transposase DDE domain J4N41_01025 PF02313 Fumarate reductase subunit D J4N41_01030 PF02300 Fumarate reductase subunit C J4N41_01035 PF13085 2Fe-2S iron-sulfur cluster binding domain J4N41_01035 PF13183 4Fe-4S dicluster domain J4N41_01040 PF02910 Fumarate reductase flavoprotein C-term J4N41_01040 PF00890 FAD binding domain J4N41_01045 PF00152 tRNA synthetases class II (D, K and N) J4N41_01050 PF06082 Exopolysaccharide biosynthesis protein YbjH J4N41_01055 PF06251 Capsule biosynthesis GfcC J4N41_01060 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF J4N41_01085 PF00581 Rhodanese-like domain J4N41_01090 PF02556 Preprotein translocase subunit SecB J4N41_01095 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus J4N41_01095 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus J4N41_01100 PF06426 Serine acetyltransferase, N-terminal J4N41_01100 PF00132 Bacterial transferase hexapeptide (six repeats) J4N41_01105 PF10400 Virulence activator alpha C-term J4N41_01105 PF03551 Transcriptional regulator PadR-like family J4N41_01110 PF00311 Phosphoenolpyruvate carboxylase J4N41_01115 PF03167 Uracil DNA glycosylase superfamily J4N41_01120 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N41_01125 PF04222 Protein of unknown function (DUF416) J4N41_01130 PF01595 Cyclin M transmembrane N-terminal domain J4N41_01130 PF00571 CBS domain J4N41_01135 PF00216 Bacterial DNA-binding protein J4N41_01145 PF02843 Phosphoribosylglycinamide synthetase, C domain J4N41_01145 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain J4N41_01145 PF02844 Phosphoribosylglycinamide synthetase, N domain J4N41_01150 PF02142 MGS-like domain J4N41_01150 PF01808 AICARFT/IMPCHase bienzyme J4N41_01155 PF13411 MerR HTH family regulatory protein J4N41_01160 PF00990 Diguanylate cyclase, GGDEF domain J4N41_01160 PF08448 PAS fold J4N41_01165 PF02954 Bacterial regulatory protein, Fis family J4N41_01170 PF01207 Dihydrouridine synthase (Dus) J4N41_01180 PF02785 Biotin carboxylase C-terminal domain J4N41_01180 PF00289 Biotin carboxylase, N-terminal domain J4N41_01180 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J4N41_01185 PF00364 Biotin-requiring enzyme J4N41_01190 PF01220 Dehydroquinase class II J4N41_01195 PF00501 AMP-binding enzyme J4N41_01195 PF13193 AMP-binding enzyme C-terminal domain J4N41_01195 PF16177 Acetyl-coenzyme A synthetase N-terminus J4N41_01210 PF12832 MFS_1 like family J4N41_01215 PF00072 Response regulator receiver domain J4N41_01215 PF09308 LuxQ, periplasmic J4N41_01215 PF00512 His Kinase A (phospho-acceptor) domain J4N41_01215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_01220 PF00485 Phosphoribulokinase / Uridine kinase family J4N41_01245 PF03143 Elongation factor Tu C-terminal domain J4N41_01245 PF03144 Elongation factor Tu domain 2 J4N41_01245 PF00009 Elongation factor Tu GTP binding domain J4N41_01250 PF00584 SecE/Sec61-gamma subunits of protein translocation complex J4N41_01255 PF00467 KOW motif J4N41_01255 PF02357 Transcription termination factor nusG J4N41_01260 PF00298 Ribosomal protein L11, RNA binding domain J4N41_01260 PF03946 Ribosomal protein L11, N-terminal domain J4N41_01265 PF00687 Ribosomal protein L1p/L10e family J4N41_01270 PF00466 Ribosomal protein L10 J4N41_01275 PF00542 Ribosomal protein L7/L12 C-terminal domain J4N41_01275 PF16320 Ribosomal protein L7/L12 dimerisation domain J4N41_01280 PF04565 RNA polymerase Rpb2, domain 3 J4N41_01280 PF00562 RNA polymerase Rpb2, domain 6 J4N41_01280 PF10385 RNA polymerase beta subunit external 1 domain J4N41_01280 PF04563 RNA polymerase beta subunit J4N41_01280 PF04561 RNA polymerase Rpb2, domain 2 J4N41_01280 PF04560 RNA polymerase Rpb2, domain 7 J4N41_01285 PF00623 RNA polymerase Rpb1, domain 2 J4N41_01285 PF04997 RNA polymerase Rpb1, domain 1 J4N41_01285 PF04983 RNA polymerase Rpb1, domain 3 J4N41_01285 PF05000 RNA polymerase Rpb1, domain 4 J4N41_01285 PF04998 RNA polymerase Rpb1, domain 5 J4N41_01290 PF03605 Anaerobic c4-dicarboxylate membrane transporter J4N41_01295 PF00206 Lyase J4N41_01295 PF10415 Fumarase C C-terminus J4N41_01300 PF04186 FxsA cytoplasmic membrane protein J4N41_01370 PF00117 Glutamine amidotransferase class-I J4N41_01375 PF00202 Aminotransferase class-III J4N41_01380 PF04958 Arginine N-succinyltransferase beta subunit J4N41_01385 PF00171 Aldehyde dehydrogenase family J4N41_01395 PF02666 Phosphatidylserine decarboxylase J4N41_01400 PF03193 RsgA GTPase J4N41_01405 PF00929 Exonuclease J4N41_01455 PF08331 Domain of unknown function (DUF1730) J4N41_01460 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE J4N41_01465 PF01520 N-acetylmuramoyl-L-alanine amidase J4N41_01470 PF01119 DNA mismatch repair protein, C-terminal domain J4N41_01470 PF08676 MutL C terminal dimerisation domain J4N41_01480 PF17209 Hfq protein J4N41_01485 PF01926 50S ribosome-binding GTPase J4N41_01485 PF13167 GTP-binding GTPase N-terminal J4N41_01485 PF16360 GTP-binding GTPase Middle Region J4N41_01490 PF01145 SPFH domain / Band 7 family J4N41_01490 PF12221 Bacterial membrane protein N terminal J4N41_01495 PF01145 SPFH domain / Band 7 family J4N41_01500 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) J4N41_01505 PF04102 SlyX J4N41_01515 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J4N41_01515 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N41_01520 PF13309 HTH domain J4N41_01520 PF08348 YheO-like PAS domain J4N41_01525 PF02635 DsrE/DsrF-like family J4N41_01530 PF02635 DsrE/DsrF-like family J4N41_01535 PF04077 DsrH like protein J4N41_01540 PF00164 Ribosomal protein S12/S23 J4N41_01545 PF00177 Ribosomal protein S7p/S5e J4N41_01550 PF03764 Elongation factor G, domain IV J4N41_01550 PF00009 Elongation factor Tu GTP binding domain J4N41_01550 PF03144 Elongation factor Tu domain 2 J4N41_01550 PF14492 Elongation Factor G, domain II J4N41_01550 PF00679 Elongation factor G C-terminus J4N41_01555 PF03143 Elongation factor Tu C-terminal domain J4N41_01555 PF03144 Elongation factor Tu domain 2 J4N41_01555 PF00009 Elongation factor Tu GTP binding domain J4N41_01560 PF04324 BFD-like [2Fe-2S] binding domain J4N41_01565 PF00210 Ferritin-like domain J4N41_01570 PF01250 Ribosomal protein S6 J4N41_01575 PF01084 Ribosomal protein S18 J4N41_01580 PF01281 Ribosomal protein L9, N-terminal domain J4N41_01580 PF03948 Ribosomal protein L9, C-terminal domain J4N41_01590 PF03796 DnaB-like helicase C terminal domain J4N41_01590 PF00772 DnaB-like helicase N terminal domain J4N41_01595 PF01168 Alanine racemase, N-terminal domain J4N41_01595 PF00842 Alanine racemase, C-terminal domain J4N41_01600 PF01894 Uncharacterised protein family UPF0047 J4N41_01605 PF00342 Phosphoglucose isomerase J4N41_01625 PF00005 ABC transporter J4N41_01640 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) J4N41_01650 PF01625 Peptide methionine sulfoxide reductase J4N41_01655 PF17243 POTRA domain TamA domain 1 J4N41_01655 PF01103 Surface antigen J4N41_01655 PF07244 Surface antigen variable number repeat J4N41_01660 PF04357 TamB, inner membrane protein subunit of TAM complex J4N41_01665 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like J4N41_01670 PF00719 Inorganic pyrophosphatase J4N41_01675 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain J4N41_01680 PF02875 Mur ligase family, glutamate ligase domain J4N41_01680 PF08245 Mur ligase middle domain J4N41_01680 PF01225 Mur ligase family, catalytic domain J4N41_01685 PF02441 Flavoprotein J4N41_01695 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_01700 PF00005 ABC transporter J4N41_01710 PF00005 ABC transporter J4N41_01710 PF17755 UvrA DNA-binding domain J4N41_01710 PF17760 UvrA interaction domain J4N41_01715 PF00483 Nucleotidyl transferase J4N41_01720 PF00196 Bacterial regulatory proteins, luxR family J4N41_01725 PF00436 Single-strand binding protein family J4N41_01730 PF00563 EAL domain J4N41_01730 PF17157 Gammaproteobacterial periplasmic sensor domain J4N41_01730 PF00990 Diguanylate cyclase, GGDEF domain J4N41_01750 PF03958 Bacterial type II/III secretion system short domain J4N41_01750 PF00263 Bacterial type II and III secretion system protein J4N41_01755 PF13401 AAA domain J4N41_01755 PF01471 Putative peptidoglycan binding domain J4N41_01765 PF00437 Type II/IV secretion system protein J4N41_01765 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J4N41_01770 PF00482 Type II secretion system (T2SS), protein F J4N41_01780 PF07963 Prokaryotic N-terminal methylation motif J4N41_01785 PF07963 Prokaryotic N-terminal methylation motif J4N41_01820 PF04085 rod shape-determining protein MreC J4N41_01825 PF04093 rod shape-determining protein MreD J4N41_01830 PF02545 Maf-like protein J4N41_01835 PF00575 S1 RNA binding domain J4N41_01835 PF10150 Ribonuclease E/G family J4N41_01840 PF13116 Protein of unknown function J4N41_01840 PF13502 AsmA-like C-terminal region J4N41_01845 PF00795 Carbon-nitrogen hydrolase J4N41_01850 PF01523 Putative modulator of DNA gyrase J4N41_01900 PF01464 Transglycosylase SLT domain J4N41_01900 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain J4N41_01905 PF04362 Bacterial Fe(2+) trafficking J4N41_01910 PF14815 NUDIX domain J4N41_01910 PF00730 HhH-GPD superfamily base excision DNA repair protein J4N41_01910 PF00633 Helix-hairpin-helix motif J4N41_01915 PF02390 Putative methyltransferase J4N41_01920 PF04960 Glutaminase J4N41_01925 PF06969 HemN C-terminal domain J4N41_01925 PF04055 Radical SAM superfamily J4N41_01930 PF01725 Ham1 family J4N41_01945 PF01609 Transposase DDE domain J4N41_01945 PF13006 Insertion element 4 transposase N-terminal J4N41_01960 PF02594 Uncharacterised ACR, YggU family COG1872 J4N41_01965 PF02325 YGGT family J4N41_01970 PF03807 NADP oxidoreductase coenzyme F420-dependent J4N41_01970 PF14748 Pyrroline-5-carboxylate reductase dimerisation J4N41_01975 PF01168 Alanine racemase, N-terminal domain J4N41_01980 PF00437 Type II/IV secretion system protein J4N41_01985 PF00437 Type II/IV secretion system protein J4N41_01990 PF03652 Holliday junction resolvase J4N41_01995 PF02622 Uncharacterized ACR, COG1678 J4N41_02000 PF02951 Prokaryotic glutathione synthetase, N-terminal domain J4N41_02000 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain J4N41_02005 PF04452 RNA methyltransferase J4N41_02010 PF04231 Endonuclease I J4N41_02015 PF17283 SprT-like zinc ribbon domain J4N41_02015 PF10263 SprT-like family J4N41_02025 PF02772 S-adenosylmethionine synthetase, central domain J4N41_02025 PF02773 S-adenosylmethionine synthetase, C-terminal domain J4N41_02025 PF00438 S-adenosylmethionine synthetase, N-terminal domain J4N41_02035 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J4N41_02035 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J4N41_02040 PF00162 Phosphoglycerate kinase J4N41_02045 PF01116 Fructose-bisphosphate aldolase class-II J4N41_02050 PF00924 Mechanosensitive ion channel J4N41_02050 PF05552 Conserved TM helix J4N41_02060 PF01810 LysE type translocator J4N41_02065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_02065 PF03466 LysR substrate binding domain J4N41_02070 PF04402 Protein of unknown function (DUF541) J4N41_02075 PF07694 5TMR of 5TMR-LYT J4N41_02075 PF00990 Diguanylate cyclase, GGDEF domain J4N41_02085 PF02887 Pyruvate kinase, alpha/beta domain J4N41_02085 PF00224 Pyruvate kinase, barrel domain J4N41_02090 PF00455 DeoR C terminal sensor domain J4N41_02090 PF08220 DeoR-like helix-turn-helix domain J4N41_02095 PF01380 SIS domain J4N41_02100 PF00694 Aconitase C-terminal domain J4N41_02105 PF00330 Aconitase family (aconitate hydratase) J4N41_02110 PF00180 Isocitrate/isopropylmalate dehydrogenase J4N41_02115 PF08502 LeuA allosteric (dimerisation) domain J4N41_02115 PF00682 HMGL-like J4N41_02130 PF03466 LysR substrate binding domain J4N41_02130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_02135 PF00501 AMP-binding enzyme J4N41_02140 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J4N41_02140 PF00205 Thiamine pyrophosphate enzyme, central domain J4N41_02140 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J4N41_02145 PF10369 Small subunit of acetolactate synthase J4N41_02150 PF03009 Glycerophosphoryl diester phosphodiesterase family J4N41_02155 PF07690 Major Facilitator Superfamily J4N41_02160 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N41_02160 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J4N41_02160 PF01842 ACT domain J4N41_02165 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) J4N41_02170 PF01812 5-formyltetrahydrofolate cyclo-ligase family J4N41_02185 PF03695 Uncharacterised protein family (UPF0149) J4N41_02190 PF01494 FAD binding domain J4N41_02195 PF01494 FAD binding domain J4N41_02210 PF01571 Aminomethyltransferase folate-binding domain J4N41_02215 PF03937 Flavinator of succinate dehydrogenase J4N41_02220 PF00890 FAD binding domain J4N41_02220 PF02910 Fumarate reductase flavoprotein C-term J4N41_02225 PF04542 Sigma-70 region 2 J4N41_02225 PF08281 Sigma-70, region 4 J4N41_02230 PF03872 Anti sigma-E protein RseA, N-terminal domain J4N41_02230 PF03873 Anti sigma-E protein RseA, C-terminal domain J4N41_02235 PF03888 MucB/RseB N-terminal domain J4N41_02235 PF17188 MucB/RseB C-terminal domain J4N41_02245 PF00679 Elongation factor G C-terminus J4N41_02245 PF06421 GTP-binding protein LepA C-terminus J4N41_02245 PF03144 Elongation factor Tu domain 2 J4N41_02245 PF00009 Elongation factor Tu GTP binding domain J4N41_02250 PF10502 Signal peptidase, peptidase S26 J4N41_02255 PF14622 Ribonuclease-III-like J4N41_02255 PF00035 Double-stranded RNA binding motif J4N41_02260 PF01926 50S ribosome-binding GTPase J4N41_02260 PF07650 KH domain J4N41_02265 PF11967 Recombination protein O N terminal J4N41_02265 PF02565 Recombination protein O C terminal J4N41_02270 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ J4N41_02275 PF01648 4'-phosphopantetheinyl transferase superfamily J4N41_02280 PF01627 Hpt domain J4N41_02280 PF00672 HAMP domain J4N41_02280 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J4N41_02280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_02280 PF00512 His Kinase A (phospho-acceptor) domain J4N41_02280 PF00072 Response regulator receiver domain J4N41_02285 PF05958 tRNA (Uracil-5-)-methyltransferase J4N41_02285 PF01938 TRAM domain J4N41_02290 PF02824 TGS domain J4N41_02290 PF04607 Region found in RelA / SpoT proteins J4N41_02290 PF13291 ACT domain J4N41_02295 PF03819 MazG nucleotide pyrophosphohydrolase domain J4N41_02300 PF06418 CTP synthase N-terminus J4N41_02300 PF00117 Glutamine amidotransferase class-I J4N41_02305 PF00113 Enolase, C-terminal TIM barrel domain J4N41_02305 PF03952 Enolase, N-terminal domain J4N41_02310 PF01966 HD domain J4N41_02310 PF01743 Poly A polymerase head domain J4N41_02310 PF12627 Probable RNA and SrmB- binding site of polymerase A J4N41_02315 PF01471 Putative peptidoglycan binding domain J4N41_02315 PF13401 AAA domain J4N41_02320 PF16537 Type II secretion system protein B J4N41_02325 PF08239 Bacterial SH3 domain J4N41_02330 PF01384 Phosphate transporter family J4N41_02335 PF01865 Protein of unknown function DUF47 J4N41_02340 PF01928 CYTH domain J4N41_02345 PF07885 Ion channel J4N41_02345 PF00027 Cyclic nucleotide-binding domain J4N41_02350 PF00672 HAMP domain J4N41_02350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N41_02355 PF08335 GlnD PII-uridylyltransferase J4N41_02355 PF03710 Glutamate-ammonia ligase adenylyltransferase J4N41_02360 PF01467 Cytidylyltransferase-like J4N41_02360 PF00294 pfkB family carbohydrate kinase J4N41_02365 PF00072 Response regulator receiver domain J4N41_02365 PF00486 Transcriptional regulatory protein, C terminal J4N41_02375 PF03737 Aldolase/RraA J4N41_02385 PF00742 Homoserine dehydrogenase J4N41_02385 PF00696 Amino acid kinase family J4N41_02385 PF01842 ACT domain J4N41_02385 PF13840 ACT domain J4N41_02385 PF03447 Homoserine dehydrogenase, NAD binding domain J4N41_02390 PF08544 GHMP kinases C terminal J4N41_02390 PF00288 GHMP kinases N terminal domain J4N41_02395 PF14821 Threonine synthase N terminus J4N41_02395 PF00291 Pyridoxal-phosphate dependent enzyme J4N41_02400 PF03458 UPF0126 domain J4N41_02405 PF01497 Periplasmic binding protein J4N41_02415 PF01048 Phosphorylase superfamily J4N41_02420 PF00312 Ribosomal protein S15 J4N41_02425 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain J4N41_02425 PF01138 3' exoribonuclease family, domain 1 J4N41_02425 PF03725 3' exoribonuclease family, domain 2 J4N41_02425 PF00575 S1 RNA binding domain J4N41_02425 PF00013 KH domain J4N41_02430 PF07719 Tetratricopeptide repeat J4N41_02430 PF13181 Tetratricopeptide repeat J4N41_02440 PF01554 MatE J4N41_02445 PF02954 Bacterial regulatory protein, Fis family J4N41_02445 PF00158 Sigma-54 interaction domain J4N41_02445 PF00072 Response regulator receiver domain J4N41_02455 PF00248 Aldo/keto reductase family J4N41_02465 PF02976 DNA mismatch repair enzyme MutH J4N41_02470 PF00293 NUDIX domain J4N41_02475 PF00391 PEP-utilising enzyme, mobile domain J4N41_02475 PF01590 GAF domain J4N41_02475 PF02896 PEP-utilising enzyme, TIM barrel domain J4N41_02475 PF05524 PEP-utilising enzyme, N-terminal J4N41_02480 PF01925 Sulfite exporter TauE/SafE J4N41_02485 PF01790 Prolipoprotein diacylglyceryl transferase J4N41_02490 PF00303 Thymidylate synthase J4N41_02495 PF02690 Na+/Pi-cotransporter J4N41_02500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_02500 PF03466 LysR substrate binding domain J4N41_02505 PF01022 Bacterial regulatory protein, arsR family J4N41_02510 PF01649 Ribosomal protein S20 J4N41_02515 PF03023 Lipid II flippase MurJ J4N41_02520 PF06574 FAD synthetase J4N41_02520 PF01687 Riboflavin kinase J4N41_02525 PF08264 Anticodon-binding domain of tRNA J4N41_02525 PF00133 tRNA synthetases class I (I, L, M and V) J4N41_02525 PF06827 Zinc finger found in FPG and IleRS J4N41_02530 PF01252 Signal peptidase (SPase) II J4N41_02535 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N41_02540 PF02401 LytB protein J4N41_02545 PF02554 Carbon starvation protein CstA J4N41_02555 PF13580 SIS domain J4N41_02560 PF03702 Anhydro-N-acetylmuramic acid kinase J4N41_02565 PF01869 BadF/BadG/BcrA/BcrD ATPase family J4N41_02575 PF01418 Helix-turn-helix domain, rpiR family J4N41_02575 PF01380 SIS domain J4N41_02580 PF00933 Glycosyl hydrolase family 3 N terminal domain J4N41_02585 PF04397 LytTr DNA-binding domain J4N41_02585 PF00072 Response regulator receiver domain J4N41_02590 PF07694 5TMR of 5TMR-LYT J4N41_02590 PF06580 Histidine kinase J4N41_02595 PF00793 DAHP synthetase I family J4N41_02600 PF01817 Chorismate mutase type II J4N41_02600 PF02153 Prephenate dehydrogenase J4N41_02605 PF04225 Opacity-associated protein A LysM-like domain J4N41_02605 PF01551 Peptidase family M23 J4N41_02610 PF07238 PilZ domain J4N41_02615 PF12848 ABC transporter J4N41_02615 PF00005 ABC transporter J4N41_02620 PF01464 Transglycosylase SLT domain J4N41_02620 PF14718 Soluble lytic murein transglycosylase L domain J4N41_02625 PF01371 Trp repressor protein J4N41_02630 PF01931 Protein of unknown function DUF84 J4N41_02635 PF00563 EAL domain J4N41_02635 PF00990 Diguanylate cyclase, GGDEF domain J4N41_02640 PF13416 Bacterial extracellular solute-binding protein J4N41_02645 PF00800 Prephenate dehydratase J4N41_02645 PF01817 Chorismate mutase type II J4N41_02650 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein J4N41_02655 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N41_02655 PF01464 Transglycosylase SLT domain J4N41_02660 PF13525 Outer membrane lipoprotein J4N41_02665 PF00849 RNA pseudouridylate synthase J4N41_02665 PF01479 S4 domain J4N41_02670 PF02578 Multi-copper polyphenol oxidoreductase laccase J4N41_02675 PF00004 ATPase family associated with various cellular activities (AAA) J4N41_02675 PF07724 AAA domain (Cdc48 subfamily) J4N41_02675 PF17871 AAA lid domain J4N41_02675 PF02861 Clp amino terminal domain, pathogenicity island component J4N41_02675 PF10431 C-terminal, D2-small domain, of ClpB protein J4N41_02720 PF00459 Inositol monophosphatase family J4N41_02725 PF00588 SpoU rRNA Methylase family J4N41_02730 PF02082 Transcriptional regulator J4N41_02735 PF00266 Aminotransferase class-V J4N41_02740 PF01592 NifU-like N terminal domain J4N41_02745 PF01521 Iron-sulphur cluster biosynthesis J4N41_02750 PF00226 DnaJ domain J4N41_02750 PF07743 HSCB C-terminal oligomerisation domain J4N41_02755 PF00012 Hsp70 protein J4N41_02760 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N41_02765 PF04384 Iron-sulphur cluster assembly J4N41_02770 PF00883 Cytosol aminopeptidase family, catalytic domain J4N41_02770 PF12404 Peptidase J4N41_02775 PF00334 Nucleoside diphosphate kinase J4N41_02780 PF00009 Elongation factor Tu GTP binding domain J4N41_02780 PF03144 Elongation factor Tu domain 2 J4N41_02780 PF00679 Elongation factor G C-terminus J4N41_02780 PF14492 Elongation Factor G, domain II J4N41_02780 PF03764 Elongation factor G, domain IV J4N41_02785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_02785 PF03466 LysR substrate binding domain J4N41_02795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_02795 PF03466 LysR substrate binding domain J4N41_02800 PF00501 AMP-binding enzyme J4N41_02805 PF12833 Helix-turn-helix domain J4N41_02805 PF02805 Metal binding domain of Ada J4N41_02835 PF13629 Pilus formation protein N terminal region J4N41_02835 PF04972 BON domain J4N41_02835 PF00263 Bacterial type II and III secretion system protein J4N41_02865 PF00437 Type II/IV secretion system protein J4N41_02885 PF02417 Chromate transporter J4N41_02890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_02890 PF03466 LysR substrate binding domain J4N41_02900 PF12833 Helix-turn-helix domain J4N41_02905 PF11975 Family 4 glycosyl hydrolase C-terminal domain J4N41_02905 PF02056 Family 4 glycosyl hydrolase J4N41_02920 PF16363 GDP-mannose 4,6 dehydratase J4N41_02925 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain J4N41_02925 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain J4N41_02930 PF10509 Galactokinase galactose-binding signature J4N41_02930 PF08544 GHMP kinases C terminal J4N41_02930 PF00288 GHMP kinases N terminal domain J4N41_02935 PF01263 Aldose 1-epimerase J4N41_02940 PF00356 Bacterial regulatory proteins, lacI family J4N41_02955 PF00563 EAL domain J4N41_02955 PF00990 Diguanylate cyclase, GGDEF domain J4N41_02955 PF03707 Bacterial signalling protein N terminal repeat J4N41_02960 PF00356 Bacterial regulatory proteins, lacI family J4N41_02975 PF02378 Phosphotransferase system, EIIC J4N41_02975 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N41_02975 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N41_02985 PF14602 Hexapeptide repeat of succinyl-transferase J4N41_02985 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle J4N41_02990 PF00578 AhpC/TSA family J4N41_02990 PF10417 C-terminal domain of 1-Cys peroxiredoxin J4N41_02995 PF03466 LysR substrate binding domain J4N41_02995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_03000 PF01274 Malate synthase J4N41_03005 PF00463 Isocitrate lyase family J4N41_03025 PF00571 CBS domain J4N41_03030 PF02547 Queuosine biosynthesis protein J4N41_03035 PF01702 Queuine tRNA-ribosyltransferase J4N41_03040 PF02699 Preprotein translocase subunit J4N41_03045 PF02355 Protein export membrane protein J4N41_03045 PF13721 SecD export protein N-terminal TM region J4N41_03045 PF07549 SecD/SecF GG Motif J4N41_03050 PF02355 Protein export membrane protein J4N41_03050 PF07549 SecD/SecF GG Motif J4N41_03060 PF03411 Penicillin-insensitive murein endopeptidase J4N41_03065 PF01609 Transposase DDE domain J4N41_03065 PF13006 Insertion element 4 transposase N-terminal J4N41_03070 PF12838 4Fe-4S dicluster domain J4N41_03075 PF16325 Peptidase family U32 C-terminal domain J4N41_03075 PF01136 Peptidase family U32 J4N41_03080 PF04381 Putative exonuclease, RdgC J4N41_03085 PF00486 Transcriptional regulatory protein, C terminal J4N41_03085 PF00072 Response regulator receiver domain J4N41_03090 PF00989 PAS fold J4N41_03090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_03090 PF00512 His Kinase A (phospho-acceptor) domain J4N41_03090 PF11808 Phosphate regulon sensor protein PhoR J4N41_03095 PF12849 PBP superfamily domain J4N41_03100 PF02541 Ppx/GppA phosphatase family J4N41_03105 PF02503 Polyphosphate kinase middle domain J4N41_03105 PF13090 Polyphosphate kinase C-terminal domain 2 J4N41_03105 PF13089 Polyphosphate kinase N-terminal domain J4N41_03105 PF17941 Polyphosphate kinase C-terminal domain 1 J4N41_03110 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_03115 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_03120 PF00005 ABC transporter J4N41_03125 PF01895 PhoU domain J4N41_03130 PF03976 Polyphosphate kinase 2 (PPK2) J4N41_03135 PF03932 CutC family J4N41_03140 PF01609 Transposase DDE domain J4N41_03140 PF13006 Insertion element 4 transposase N-terminal J4N41_03145 PF07130 YebG protein J4N41_03150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_03150 PF03466 LysR substrate binding domain J4N41_03160 PF17946 RecC C-terminal domain J4N41_03165 PF12705 PD-(D/E)XK nuclease superfamily J4N41_03165 PF00580 UvrD/REP helicase N-terminal domain J4N41_03165 PF13361 UvrD-like helicase C-terminal domain J4N41_03170 PF13538 UvrD-like helicase C-terminal domain J4N41_03180 PF00696 Amino acid kinase family J4N41_03180 PF00583 Acetyltransferase (GNAT) family J4N41_03190 PF03562 MltA specific insert domain J4N41_03190 PF06725 3D domain J4N41_03195 PF00899 ThiF family J4N41_03200 PF02657 Fe-S metabolism associated domain J4N41_03205 PF04055 Radical SAM superfamily J4N41_03210 PF13464 Domain of unknown function (DUF4115) J4N41_03215 PF04551 GcpE protein J4N41_03220 PF13393 Histidyl-tRNA synthetase J4N41_03220 PF03129 Anticodon binding domain J4N41_03225 PF09976 Tetratricopeptide repeat-like domain J4N41_03230 PF13360 PQQ-like domain J4N41_03235 PF01926 50S ribosome-binding GTPase J4N41_03235 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal J4N41_03240 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J4N41_03240 PF01411 tRNA synthetases class II (A) J4N41_03240 PF02272 DHHA1 domain J4N41_03250 PF13742 OB-fold nucleic acid binding domain J4N41_03250 PF02601 Exonuclease VII, large subunit J4N41_03255 PF00478 IMP dehydrogenase / GMP reductase domain J4N41_03255 PF00571 CBS domain J4N41_03260 PF02540 NAD synthase J4N41_03260 PF00958 GMP synthase C terminal domain J4N41_03260 PF00117 Glutamine amidotransferase class-I J4N41_03265 PF06483 Chitinase C J4N41_03265 PF00704 Glycosyl hydrolases family 18 J4N41_03270 PF01184 GPR1/FUN34/yaaH family J4N41_03275 PF01235 Sodium:alanine symporter family J4N41_03280 PF01266 FAD dependent oxidoreductase J4N41_03285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_03285 PF03466 LysR substrate binding domain J4N41_03290 PF07885 Ion channel J4N41_03300 PF01584 CheW-like domain J4N41_03300 PF00072 Response regulator receiver domain J4N41_03305 PF01553 Acyltransferase J4N41_03310 PF05922 Peptidase inhibitor I9 J4N41_03310 PF00082 Subtilase family J4N41_03320 PF13840 ACT domain J4N41_03320 PF00696 Amino acid kinase family J4N41_03325 PF01590 GAF domain J4N41_03325 PF00990 Diguanylate cyclase, GGDEF domain J4N41_03325 PF00563 EAL domain J4N41_03325 PF00360 Phytochrome region J4N41_03330 PF00990 Diguanylate cyclase, GGDEF domain J4N41_03330 PF07694 5TMR of 5TMR-LYT J4N41_03340 PF00571 CBS domain J4N41_03340 PF01769 Divalent cation transporter J4N41_03340 PF03448 MgtE intracellular N domain J4N41_03345 PF18030 RimK PreATP-grasp domain J4N41_03345 PF08443 RimK-like ATP-grasp domain J4N41_03350 PF18030 RimK PreATP-grasp domain J4N41_03350 PF08443 RimK-like ATP-grasp domain J4N41_03365 PF01668 SmpB protein J4N41_03370 PF03364 Polyketide cyclase / dehydrase and lipid transport J4N41_03375 PF03658 RnfH family Ubiquitin J4N41_03380 PF04355 SmpA / OmlA family J4N41_03385 PF02463 RecF/RecN/SMC N terminal domain J4N41_03390 PF01513 ATP-NAD kinase J4N41_03395 PF01025 GrpE J4N41_03400 PF00375 Sodium:dicarboxylate symporter family J4N41_03405 PF00012 Hsp70 protein J4N41_03410 PF00684 DnaJ central domain J4N41_03410 PF01556 DnaJ C terminal domain J4N41_03410 PF00226 DnaJ domain J4N41_03440 PF03806 AbgT putative transporter family J4N41_03445 PF14437 MafB19-like deaminase J4N41_03450 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N41_03450 PF01464 Transglycosylase SLT domain J4N41_03455 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal J4N41_03455 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain J4N41_03455 PF02769 AIR synthase related protein, C-terminal domain J4N41_03470 PF06786 Uncharacterised protein family (UPF0253) J4N41_03480 PF00551 Formyl transferase J4N41_03485 PF02769 AIR synthase related protein, C-terminal domain J4N41_03485 PF00586 AIR synthase related protein, N-terminal domain J4N41_03495 PF01479 S4 domain J4N41_03495 PF00849 RNA pseudouridylate synthase J4N41_03500 PF01713 Smr domain J4N41_03520 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain J4N41_03520 PF03173 Putative carbohydrate binding domain J4N41_03520 PF00728 Glycosyl hydrolase family 20, catalytic domain J4N41_03520 PF02838 Glycosyl hydrolase family 20, domain 2 J4N41_03525 PF00854 POT family J4N41_03530 PF00733 Asparagine synthase J4N41_03530 PF13537 Glutamine amidotransferase domain J4N41_03535 PF00999 Sodium/hydrogen exchanger family J4N41_03535 PF02254 TrkA-N domain J4N41_03540 PF01047 MarR family J4N41_03540 PF00480 ROK family J4N41_03545 PF01979 Amidohydrolase family J4N41_03550 PF02378 Phosphotransferase system, EIIC J4N41_03550 PF00367 phosphotransferase system, EIIB J4N41_03550 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 J4N41_03555 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain J4N41_03555 PF00749 tRNA synthetases class I (E and Q), catalytic domain J4N41_03560 PF01475 Ferric uptake regulator family J4N41_03570 PF13609 Gram-negative porin J4N41_03585 PF01145 SPFH domain / Band 7 family J4N41_03585 PF16200 C-terminal region of band_7 J4N41_03590 PF00085 Thioredoxin J4N41_03595 PF00106 short chain dehydrogenase J4N41_03600 PF01370 NAD dependent epimerase/dehydratase family J4N41_03600 PF08338 Domain of unknown function (DUF1731) J4N41_03605 PF07556 Protein of unknown function (DUF1538) J4N41_03610 PF07556 Protein of unknown function (DUF1538) J4N41_03625 PF12850 Calcineurin-like phosphoesterase superfamily domain J4N41_03640 PF17323 Trans-membrane regulatory protein ToxS J4N41_03645 PF00486 Transcriptional regulatory protein, C terminal J4N41_03650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_03650 PF00183 Hsp90 protein J4N41_03655 PF05191 Adenylate kinase, active site lid J4N41_03660 PF00762 Ferrochelatase J4N41_03665 PF01223 DNA/RNA non-specific endonuclease J4N41_03670 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J4N41_03670 PF01367 5'-3' exonuclease, C-terminal SAM fold J4N41_03675 PF03641 Possible lysine decarboxylase J4N41_03675 PF11892 Domain of unknown function (DUF3412) J4N41_03675 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases J4N41_03680 PF00990 Diguanylate cyclase, GGDEF domain J4N41_03690 PF14489 QueF-like protein J4N41_03690 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term J4N41_03695 PF07348 Syd protein (SUKH-2) J4N41_03700 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) J4N41_03715 PF01546 Peptidase family M20/M25/M40 J4N41_03715 PF07687 Peptidase dimerisation domain J4N41_03720 PF03960 ArsC family J4N41_03745 PF02335 Cytochrome c552 J4N41_03755 PF13247 4Fe-4S dicluster domain J4N41_03755 PF00037 4Fe-4S binding domain J4N41_03760 PF03916 Polysulphide reductase, NrfD J4N41_03765 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal J4N41_03765 PF01578 Cytochrome C assembly protein J4N41_03770 PF08534 Redoxin J4N41_03775 PF03918 Cytochrome C biogenesis protein J4N41_03780 PF11143 Protein of unknown function (DUF2919) J4N41_03785 PF04261 Dyp-type peroxidase family J4N41_03790 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family J4N41_03800 PF00579 tRNA synthetases class I (W and Y) J4N41_03805 PF01551 Peptidase family M23 J4N41_03805 PF08525 Opacity-associated protein A N-terminal motif J4N41_03805 PF01476 LysM domain J4N41_03810 PF00700 Bacterial flagellin C-terminal helical region J4N41_03810 PF07196 Flagellin hook IN motif J4N41_03810 PF00669 Bacterial flagellin N-terminal helical region J4N41_03815 PF00700 Bacterial flagellin C-terminal helical region J4N41_03815 PF07196 Flagellin hook IN motif J4N41_03815 PF00669 Bacterial flagellin N-terminal helical region J4N41_03820 PF00700 Bacterial flagellin C-terminal helical region J4N41_03820 PF07196 Flagellin hook IN motif J4N41_03820 PF00669 Bacterial flagellin N-terminal helical region J4N41_03825 PF03646 FlaG protein J4N41_03830 PF07195 Flagellar hook-associated protein 2 C-terminus J4N41_03830 PF02465 Flagellar hook-associated protein 2 N-terminus J4N41_03830 PF07196 Flagellin hook IN motif J4N41_03840 PF02561 Flagellar protein FliS J4N41_03845 PF06490 Flagellar regulatory protein FleQ J4N41_03845 PF02954 Bacterial regulatory protein, Fis family J4N41_03845 PF00158 Sigma-54 interaction domain J4N41_03850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_03850 PF00512 His Kinase A (phospho-acceptor) domain J4N41_03850 PF13188 PAS domain J4N41_03855 PF02954 Bacterial regulatory protein, Fis family J4N41_03855 PF00072 Response regulator receiver domain J4N41_03855 PF00158 Sigma-54 interaction domain J4N41_03860 PF02049 Flagellar hook-basal body complex protein FliE J4N41_03865 PF08345 Flagellar M-ring protein C-terminal J4N41_03865 PF01514 Secretory protein of YscJ/FliF family J4N41_03870 PF01706 FliG C-terminal domain J4N41_03870 PF14841 FliG middle domain J4N41_03870 PF14842 FliG N-terminal domain J4N41_03880 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N41_03880 PF18269 T3SS EscN ATPase C-terminal domain J4N41_03900 PF02154 Flagellar motor switch protein FliM J4N41_03900 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J4N41_03905 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J4N41_03910 PF04347 Flagellar biosynthesis protein, FliO J4N41_03915 PF00813 FliP family J4N41_03920 PF01313 Bacterial export proteins, family 3 J4N41_03925 PF01311 Bacterial export proteins, family 1 J4N41_03930 PF01312 FlhB HrpN YscU SpaS Family J4N41_03935 PF01713 Smr domain J4N41_03940 PF05175 Methyltransferase small domain J4N41_03945 PF01264 Chorismate synthase J4N41_03955 PF03458 UPF0126 domain J4N41_03960 PF04315 Elongation factor P hydroxylase J4N41_03975 PF08891 YfcL protein J4N41_03980 PF01266 FAD dependent oxidoreductase J4N41_03980 PF05430 S-adenosyl-L-methionine-dependent methyltransferase J4N41_03985 PF02801 Beta-ketoacyl synthase, C-terminal domain J4N41_03985 PF00109 Beta-ketoacyl synthase, N-terminal domain J4N41_03990 PF11890 Domain of unknown function (DUF3410) J4N41_03990 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N41_03990 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J4N41_03995 PF02774 Semialdehyde dehydrogenase, dimerisation domain J4N41_03995 PF01118 Semialdehyde dehydrogenase, NAD binding domain J4N41_04005 PF01416 tRNA pseudouridine synthase J4N41_04010 PF01039 Carboxyl transferase domain J4N41_04010 PF17848 Acetyl-coA carboxylase zinc finger domain J4N41_04015 PF02875 Mur ligase family, glutamate ligase domain J4N41_04015 PF08245 Mur ligase middle domain J4N41_04020 PF05036 Sporulation related domain J4N41_04025 PF02674 Colicin V production protein J4N41_04030 PF00156 Phosphoribosyl transferase domain J4N41_04035 PF00950 ABC 3 transport family J4N41_04040 PF00005 ABC transporter J4N41_04045 PF01297 Zinc-uptake complex component A periplasmic J4N41_04050 PF02311 AraC-like ligand binding domain J4N41_04050 PF12833 Helix-turn-helix domain J4N41_04055 PF04023 FeoA domain J4N41_04060 PF07664 Ferrous iron transport protein B C terminus J4N41_04060 PF02421 Ferrous iron transport protein B J4N41_04060 PF07670 Nucleoside recognition J4N41_04075 PF03485 Arginyl tRNA synthetase N terminal domain J4N41_04075 PF05746 DALR anticodon binding domain J4N41_04075 PF00750 tRNA synthetases class I (R) J4N41_04080 PF06185 YecM protein J4N41_04085 PF05193 Peptidase M16 inactive domain J4N41_04085 PF00675 Insulinase (Peptidase family M16) J4N41_04090 PF00300 Histidine phosphatase superfamily (branch 1) J4N41_04095 PF00771 FHIPEP family J4N41_04100 PF00448 SRP54-type protein, GTPase domain J4N41_04105 PF10609 NUBPL iron-transfer P-loop NTPase J4N41_04110 PF04542 Sigma-70 region 2 J4N41_04110 PF04539 Sigma-70 region 3 J4N41_04110 PF04545 Sigma-70, region 4 J4N41_04115 PF00072 Response regulator receiver domain J4N41_04120 PF04344 Chemotaxis phosphatase, CheZ J4N41_04125 PF00072 Response regulator receiver domain J4N41_04125 PF01627 Hpt domain J4N41_04125 PF01584 CheW-like domain J4N41_04125 PF02895 Signal transducing histidine kinase, homodimeric domain J4N41_04125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_04130 PF01339 CheB methylesterase J4N41_04130 PF00072 Response regulator receiver domain J4N41_04135 PF13614 AAA domain J4N41_04145 PF01584 CheW-like domain J4N41_04155 PF00005 ABC transporter J4N41_04160 PF03379 CcmB protein J4N41_04165 PF01578 Cytochrome C assembly protein J4N41_04170 PF04995 Heme exporter protein D (CcmD) J4N41_04175 PF03100 CcmE J4N41_04180 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal J4N41_04180 PF01578 Cytochrome C assembly protein J4N41_04185 PF08534 Redoxin J4N41_04190 PF03918 Cytochrome C biogenesis protein J4N41_04195 PF03918 Cytochrome C biogenesis protein J4N41_04200 PF04333 MlaA lipoprotein J4N41_04205 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J4N41_04210 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J4N41_04220 PF04542 Sigma-70 region 2 J4N41_04220 PF08281 Sigma-70, region 4 J4N41_04225 PF00108 Thiolase, N-terminal domain J4N41_04225 PF02803 Thiolase, C-terminal domain J4N41_04230 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J4N41_04230 PF00378 Enoyl-CoA hydratase/isomerase J4N41_04230 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J4N41_04235 PF00881 Nitroreductase family J4N41_04240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_04240 PF03466 LysR substrate binding domain J4N41_04245 PF00072 Response regulator receiver domain J4N41_04250 PF04304 Protein of unknown function (DUF454) J4N41_04255 PF00156 Phosphoribosyl transferase domain J4N41_04260 PF12169 DNA polymerase III subunits gamma and tau domain III J4N41_04260 PF12170 DNA polymerase III tau subunit V interacting with alpha J4N41_04260 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding J4N41_04265 PF02575 YbaB/EbfC DNA-binding family J4N41_04270 PF13662 Toprim domain J4N41_04270 PF02132 RecR protein J4N41_04275 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain J4N41_04275 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain J4N41_04290 PF00072 Response regulator receiver domain J4N41_04290 PF00486 Transcriptional regulatory protein, C terminal J4N41_04295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_04295 PF00672 HAMP domain J4N41_04295 PF00512 His Kinase A (phospho-acceptor) domain J4N41_04300 PF01547 Bacterial extracellular solute-binding protein J4N41_04305 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_04310 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_04315 PF00005 ABC transporter J4N41_04315 PF17912 MalK OB fold domain J4N41_04315 PF03459 TOBE domain J4N41_04320 PF03480 Bacterial extracellular solute-binding protein, family 7 J4N41_04325 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component J4N41_04330 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J4N41_04340 PF02954 Bacterial regulatory protein, Fis family J4N41_04340 PF00072 Response regulator receiver domain J4N41_04340 PF00158 Sigma-54 interaction domain J4N41_04345 PF02743 Cache domain J4N41_04345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_04345 PF00512 His Kinase A (phospho-acceptor) domain J4N41_04350 PF05697 Bacterial trigger factor protein (TF) J4N41_04350 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N41_04350 PF05698 Bacterial trigger factor protein (TF) C-terminus J4N41_04355 PF00574 Clp protease J4N41_04360 PF06689 ClpX C4-type zinc finger J4N41_04360 PF07724 AAA domain (Cdc48 subfamily) J4N41_04360 PF10431 C-terminal, D2-small domain, of ClpB protein J4N41_04365 PF00004 ATPase family associated with various cellular activities (AAA) J4N41_04365 PF05362 Lon protease (S16) C-terminal proteolytic domain J4N41_04365 PF02190 ATP-dependent protease La (LON) substrate-binding domain J4N41_04370 PF00216 Bacterial DNA-binding protein J4N41_04375 PF13145 PPIC-type PPIASE domain J4N41_04385 PF02224 Cytidylate kinase J4N41_04390 PF00575 S1 RNA binding domain J4N41_04395 PF00216 Bacterial DNA-binding protein J4N41_04400 PF06305 Lipopolysaccharide assembly protein A domain J4N41_04405 PF18073 Rubredoxin metal binding domain J4N41_04410 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family J4N41_04415 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) J4N41_04425 PF03466 LysR substrate binding domain J4N41_04425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_04440 PF02653 Branched-chain amino acid transport system / permease component J4N41_04445 PF00005 ABC transporter J4N41_04450 PF01207 Dihydrouridine synthase (Dus) J4N41_04455 PF07516 SecA Wing and Scaffold domain J4N41_04455 PF01043 SecA preprotein cross-linking domain J4N41_04455 PF07517 SecA DEAD-like domain J4N41_04455 PF02810 SEC-C motif J4N41_04460 PF03548 Outer membrane lipoprotein carrier protein LolA J4N41_04465 PF16193 AAA C-terminal domain J4N41_04465 PF12002 MgsA AAA+ ATPase C terminal J4N41_04465 PF00004 ATPase family associated with various cellular activities (AAA) J4N41_04470 PF02403 Seryl-tRNA synthetase N-terminal domain J4N41_04470 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J4N41_04475 PF00710 Asparaginase, N-terminal J4N41_04475 PF17763 Glutaminase/Asparaginase C-terminal domain J4N41_04480 PF01343 Peptidase family S49 J4N41_04485 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J4N41_04485 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N41_04490 PF00551 Formyl transferase J4N41_04490 PF01842 ACT domain J4N41_04500 PF13307 Helicase C-terminal domain J4N41_04500 PF04851 Type III restriction enzyme, res subunit J4N41_04505 PF00814 Glycoprotease family J4N41_04520 PF00561 alpha/beta hydrolase fold J4N41_04525 PF13193 AMP-binding enzyme C-terminal domain J4N41_04525 PF00501 AMP-binding enzyme J4N41_04530 PF01612 3'-5' exonuclease J4N41_04530 PF00570 HRDC domain J4N41_04535 PF01740 STAS domain J4N41_04535 PF00916 Sulfate permease family J4N41_04540 PF12111 Polyribonucleotide phosphorylase C terminal J4N41_04540 PF10150 Ribonuclease E/G family J4N41_04540 PF00575 S1 RNA binding domain J4N41_04545 PF00849 RNA pseudouridylate synthase J4N41_04545 PF01479 S4 domain J4N41_04550 PF02545 Maf-like protein J4N41_04555 PF02620 Large ribosomal RNA subunit accumulation protein YceD J4N41_04560 PF01783 Ribosomal L32p protein family J4N41_04565 PF02504 Fatty acid synthesis protein J4N41_04570 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J4N41_04570 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J4N41_04575 PF00698 Acyl transferase domain J4N41_04585 PF00550 Phosphopantetheine attachment site J4N41_04590 PF00109 Beta-ketoacyl synthase, N-terminal domain J4N41_04590 PF02801 Beta-ketoacyl synthase, C-terminal domain J4N41_04595 PF01063 Amino-transferase class IV J4N41_04600 PF02618 YceG-like family J4N41_04605 PF02223 Thymidylate kinase J4N41_04610 PF09115 DNA polymerase III, delta subunit, C terminal J4N41_04615 PF01026 TatD related DNase J4N41_04620 PF00367 phosphotransferase system, EIIB J4N41_04620 PF02378 Phosphotransferase system, EIIC J4N41_04635 PF00209 Sodium:neurotransmitter symporter family J4N41_04650 PF01734 Patatin-like phospholipase J4N41_04655 PF11066 Protein of unknown function (DUF2867) J4N41_04655 PF13460 NAD(P)H-binding J4N41_04675 PF02075 Crossover junction endodeoxyribonuclease RuvC J4N41_04680 PF02203 Tar ligand binding domain homologue J4N41_04680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N41_04680 PF00672 HAMP domain J4N41_04685 PF07499 RuvA, C-terminal domain J4N41_04685 PF01330 RuvA N terminal domain J4N41_04690 PF17864 RuvB AAA lid domain J4N41_04690 PF05491 RuvB C-terminal winged helix domain J4N41_04690 PF05496 Holliday junction DNA helicase RuvB P-loop domain J4N41_04695 PF01654 Cytochrome bd terminal oxidase subunit I J4N41_04700 PF02322 Cytochrome bd terminal oxidase subunit II J4N41_04705 PF08173 Membrane bound YbgT-like protein J4N41_04715 PF03061 Thioesterase superfamily J4N41_04720 PF01618 MotA/TolQ/ExbB proton channel family J4N41_04725 PF02472 Biopolymer transport protein ExbD/TolR J4N41_04735 PF07676 WD40-like Beta Propeller Repeat J4N41_04735 PF04052 TolB amino-terminal domain J4N41_04740 PF00691 OmpA family J4N41_04745 PF16331 TolA binding protein trimerisation J4N41_04745 PF13174 Tetratricopeptide repeat J4N41_04750 PF02445 Quinolinate synthetase A protein J4N41_04765 PF00072 Response regulator receiver domain J4N41_04765 PF09308 LuxQ, periplasmic J4N41_04765 PF00512 His Kinase A (phospho-acceptor) domain J4N41_04765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_04770 PF06610 L-alanine exporter J4N41_04780 PF12102 Domain of unknown function (DUF3578) J4N41_04780 PF07728 AAA domain (dynein-related subfamily) J4N41_04800 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J4N41_04805 PF01161 Phosphatidylethanolamine-binding protein J4N41_04815 PF01238 Phosphomannose isomerase type I J4N41_04820 PF00480 ROK family J4N41_04835 PF00440 Bacterial regulatory proteins, tetR family J4N41_04835 PF16295 Tetracyclin repressor-like, C-terminal domain J4N41_04840 PF09317 Domain of unknown function (DUF1974) J4N41_04840 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J4N41_04840 PF02770 Acyl-CoA dehydrogenase, middle domain J4N41_04840 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J4N41_04845 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase J4N41_04845 PF07055 Enoyl reductase FAD binding domain J4N41_04845 PF12241 Trans-2-enoyl-CoA reductase catalytic region J4N41_04855 PF03372 Endonuclease/Exonuclease/phosphatase family J4N41_04860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N41_04860 PF00672 HAMP domain J4N41_04865 PF08007 Cupin superfamily protein J4N41_04870 PF10689 Protein of unknown function (DUF2496) J4N41_04880 PF01925 Sulfite exporter TauE/SafE J4N41_04885 PF06733 DEAD_2 J4N41_04885 PF13307 Helicase C-terminal domain J4N41_04895 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) J4N41_04900 PF00202 Aminotransferase class-III J4N41_04905 PF06968 Biotin and Thiamin Synthesis associated domain J4N41_04905 PF04055 Radical SAM superfamily J4N41_04910 PF00155 Aminotransferase class I and II J4N41_04915 PF08241 Methyltransferase domain J4N41_04915 PF12697 Alpha/beta hydrolase family J4N41_04930 PF01435 Peptidase family M48 J4N41_04965 PF16036 Chalcone isomerase-like J4N41_04975 PF00206 Lyase J4N41_04975 PF08328 Adenylosuccinate lyase C-terminal J4N41_04980 PF04356 Protein of unknown function (DUF489) J4N41_04995 PF00294 pfkB family carbohydrate kinase J4N41_05000 PF00816 H-NS histone family J4N41_05005 PF03553 Na+/H+ antiporter family J4N41_05010 PF08029 HisG, C-terminal domain J4N41_05010 PF01634 ATP phosphoribosyltransferase J4N41_05015 PF00815 Histidinol dehydrogenase J4N41_05020 PF00155 Aminotransferase class I and II J4N41_05025 PF00475 Imidazoleglycerol-phosphate dehydratase J4N41_05025 PF08645 Polynucleotide kinase 3 phosphatase J4N41_05030 PF00117 Glutamine amidotransferase class-I J4N41_05035 PF00977 Histidine biosynthesis protein J4N41_05040 PF00977 Histidine biosynthesis protein J4N41_05045 PF01502 Phosphoribosyl-AMP cyclohydrolase J4N41_05045 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase J4N41_05050 PF00563 EAL domain J4N41_05050 PF00990 Diguanylate cyclase, GGDEF domain J4N41_05050 PF13426 PAS domain J4N41_05055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_05055 PF00512 His Kinase A (phospho-acceptor) domain J4N41_05055 PF09456 RcsC Alpha-Beta-Loop (ABL) J4N41_05055 PF00072 Response regulator receiver domain J4N41_05065 PF00072 Response regulator receiver domain J4N41_05075 PF02833 DHHA2 domain J4N41_05075 PF01368 DHH family J4N41_05085 PF00005 ABC transporter J4N41_05090 PF00005 ABC transporter J4N41_05090 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N41_05095 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_05095 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N41_05100 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_05105 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N41_05110 PF02954 Bacterial regulatory protein, Fis family J4N41_05110 PF00158 Sigma-54 interaction domain J4N41_05115 PF04012 PspA/IM30 family J4N41_05120 PF06667 Phage shock protein B J4N41_05135 PF13533 Biotin-lipoyl like J4N41_05140 PF00873 AcrB/AcrD/AcrF family J4N41_05145 PF03352 Methyladenine glycosylase J4N41_05150 PF03280 Proteobacterial lipase chaperone protein J4N41_05155 PF00561 alpha/beta hydrolase fold J4N41_05160 PF01053 Cys/Met metabolism PLP-dependent enzyme J4N41_05165 PF13091 PLD-like domain J4N41_05165 PF13396 Phospholipase_D-nuclease N-terminal J4N41_05170 PF00209 Sodium:neurotransmitter symporter family J4N41_05175 PF00849 RNA pseudouridylate synthase J4N41_05180 PF10672 S-adenosylmethionine-dependent methyltransferase J4N41_05180 PF17785 PUA-like domain J4N41_05190 PF01066 CDP-alcohol phosphatidyltransferase J4N41_05195 PF00005 ABC transporter J4N41_05200 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_05205 PF13416 Bacterial extracellular solute-binding protein J4N41_05215 PF06945 Protein of unknown function (DUF1289) J4N41_05230 PF03795 YCII-related domain J4N41_05235 PF03061 Thioesterase superfamily J4N41_05240 PF04279 Intracellular septation protein A J4N41_05250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_05250 PF00072 Response regulator receiver domain J4N41_05255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_05255 PF00072 Response regulator receiver domain J4N41_05260 PF17327 Acyl homoserine lactone synthase J4N41_05265 PF00216 Bacterial DNA-binding protein J4N41_05270 PF04269 Protein of unknown function, DUF440 J4N41_05275 PF09285 Elongation factor P, C-terminal J4N41_05275 PF01132 Elongation factor P (EF-P) OB domain J4N41_05275 PF08207 Elongation factor P (EF-P) KOW-like domain J4N41_05285 PF03104 DNA polymerase family B, exonuclease domain J4N41_05285 PF00136 DNA polymerase family B J4N41_05300 PF00196 Bacterial regulatory proteins, luxR family J4N41_05300 PF00072 Response regulator receiver domain J4N41_05305 PF01541 GIY-YIG catalytic domain J4N41_05305 PF02151 UvrB/uvrC motif J4N41_05305 PF08459 UvrC Helix-hairpin-helix N-terminal J4N41_05310 PF01066 CDP-alcohol phosphatidyltransferase J4N41_05335 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J4N41_05345 PF00266 Aminotransferase class-V J4N41_05350 PF00672 HAMP domain J4N41_05350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N41_05350 PF12729 Four helix bundle sensory module for signal transduction J4N41_05355 PF11842 Domain of unknown function (DUF3362) J4N41_05355 PF08497 Radical SAM N-terminal J4N41_05355 PF04055 Radical SAM superfamily J4N41_05360 PF00563 EAL domain J4N41_05360 PF00990 Diguanylate cyclase, GGDEF domain J4N41_05360 PF03707 Bacterial signalling protein N terminal repeat J4N41_05375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_05375 PF03466 LysR substrate binding domain J4N41_05380 PF08267 Cobalamin-independent synthase, N-terminal domain J4N41_05380 PF01717 Cobalamin-independent synthase, Catalytic domain J4N41_05390 PF02566 OsmC-like protein J4N41_05395 PF01047 MarR family J4N41_05405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_05405 PF03466 LysR substrate binding domain J4N41_05430 PF02627 Carboxymuconolactone decarboxylase family J4N41_05455 PF04116 Fatty acid hydroxylase superfamily J4N41_05465 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term J4N41_05465 PF12833 Helix-turn-helix domain J4N41_05480 PF00012 Hsp70 protein J4N41_05485 PF00012 Hsp70 protein J4N41_05520 PF00271 Helicase conserved C-terminal domain J4N41_05520 PF04408 Helicase associated domain (HA2) J4N41_05520 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold J4N41_05520 PF00270 DEAD/DEAH box helicase J4N41_05520 PF11898 Domain of unknown function (DUF3418) J4N41_05535 PF00290 Tryptophan synthase alpha chain J4N41_05540 PF00291 Pyridoxal-phosphate dependent enzyme J4N41_05545 PF00218 Indole-3-glycerol phosphate synthase J4N41_05545 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase J4N41_05550 PF02885 Glycosyl transferase family, helical bundle domain J4N41_05550 PF00591 Glycosyl transferase family, a/b domain J4N41_05555 PF00117 Glutamine amidotransferase class-I J4N41_05560 PF04715 Anthranilate synthase component I, N terminal region J4N41_05560 PF00425 chorismate binding enzyme J4N41_05565 PF08056 Tryptophan operon leader peptide J4N41_05570 PF02811 PHP domain J4N41_05575 PF01300 Telomere recombination J4N41_05585 PF00563 EAL domain J4N41_05585 PF03707 Bacterial signalling protein N terminal repeat J4N41_05585 PF00990 Diguanylate cyclase, GGDEF domain J4N41_05590 PF01479 S4 domain J4N41_05590 PF00849 RNA pseudouridylate synthase J4N41_05595 PF02567 Phenazine biosynthesis-like protein J4N41_05600 PF00005 ABC transporter J4N41_05600 PF00664 ABC transporter transmembrane region J4N41_05605 PF00005 ABC transporter J4N41_05605 PF00664 ABC transporter transmembrane region J4N41_05610 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N41_05620 PF00266 Aminotransferase class-V J4N41_05625 PF00675 Insulinase (Peptidase family M16) J4N41_05625 PF05193 Peptidase M16 inactive domain J4N41_05635 PF02698 DUF218 domain J4N41_05645 PF00390 Malic enzyme, N-terminal domain J4N41_05645 PF03949 Malic enzyme, NAD binding domain J4N41_05650 PF11898 Domain of unknown function (DUF3418) J4N41_05650 PF04408 Helicase associated domain (HA2) J4N41_05650 PF00271 Helicase conserved C-terminal domain J4N41_05650 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold J4N41_05650 PF00270 DEAD/DEAH box helicase J4N41_05665 PF00155 Aminotransferase class I and II J4N41_05670 PF01966 HD domain J4N41_05670 PF00672 HAMP domain J4N41_05680 PF00155 Aminotransferase class I and II J4N41_05680 PF00392 Bacterial regulatory proteins, gntR family J4N41_05690 PF00152 tRNA synthetases class II (D, K and N) J4N41_05690 PF01336 OB-fold nucleic acid binding domain J4N41_05695 PF12729 Four helix bundle sensory module for signal transduction J4N41_05695 PF00672 HAMP domain J4N41_05695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N41_05700 PF01242 6-pyruvoyl tetrahydropterin synthase J4N41_05705 PF03222 Tryptophan/tyrosine permease family J4N41_05715 PF03315 Serine dehydratase beta chain J4N41_05715 PF03313 Serine dehydratase alpha chain J4N41_05720 PF03222 Tryptophan/tyrosine permease family J4N41_05725 PF00293 NUDIX domain J4N41_05735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_05735 PF00512 His Kinase A (phospho-acceptor) domain J4N41_05735 PF09308 LuxQ, periplasmic J4N41_05735 PF00072 Response regulator receiver domain J4N41_05740 PF00425 chorismate binding enzyme J4N41_05740 PF04715 Anthranilate synthase component I, N terminal region J4N41_05755 PF04317 YcjX-like family, DUF463 J4N41_05760 PF05128 Domain of unknown function (DUF697) J4N41_05765 PF18024 Helix-turn-helix domain J4N41_05765 PF00158 Sigma-54 interaction domain J4N41_05770 PF13302 Acetyltransferase (GNAT) domain J4N41_05790 PF00990 Diguanylate cyclase, GGDEF domain J4N41_05800 PF00925 GTP cyclohydrolase II J4N41_05825 PF01471 Putative peptidoglycan binding domain J4N41_05825 PF03734 L,D-transpeptidase catalytic domain J4N41_05830 PF05951 Bacterial protein of unknown function (DUF882) J4N41_05835 PF00753 Metallo-beta-lactamase superfamily J4N41_05850 PF03480 Bacterial extracellular solute-binding protein, family 7 J4N41_05860 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J4N41_05865 PF07730 Histidine kinase J4N41_05865 PF17200 Single Cache domain 2 J4N41_05870 PF00072 Response regulator receiver domain J4N41_05870 PF00196 Bacterial regulatory proteins, luxR family J4N41_05880 PF00210 Ferritin-like domain J4N41_05890 PF13520 Amino acid permease J4N41_05895 PF00892 EamA-like transporter family J4N41_05920 PF04229 GrpB protein J4N41_05930 PF14552 Tautomerase enzyme J4N41_06020 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N41_06170 PF01042 Endoribonuclease L-PSP J4N41_06270 PF09905 DNA-binding protein VF530 J4N41_06480 PF01609 Transposase DDE domain J4N41_06480 PF13006 Insertion element 4 transposase N-terminal J4N41_06620 PF04229 GrpB protein J4N41_06665 PF07007 Lysozyme inhibitor LprI J4N41_06750 PF01609 Transposase DDE domain J4N41_06750 PF13006 Insertion element 4 transposase N-terminal J4N41_06775 PF01810 LysE type translocator J4N41_06780 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system J4N41_06785 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system J4N41_06805 PF02567 Phenazine biosynthesis-like protein J4N41_06880 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N41_06885 PF04209 homogentisate 1,2-dioxygenase J4N41_06895 PF02798 Glutathione S-transferase, N-terminal domain J4N41_06895 PF14497 Glutathione S-transferase, C-terminal domain J4N41_06910 PF00691 OmpA family J4N41_06910 PF13488 Glycine zipper J4N41_06925 PF01565 FAD binding domain J4N41_06925 PF13183 4Fe-4S dicluster domain J4N41_06925 PF02913 FAD linked oxidases, C-terminal domain J4N41_06930 PF04191 Phospholipid methyltransferase J4N41_06940 PF00221 Aromatic amino acid lyase J4N41_06945 PF17392 Urocanase C-terminal domain J4N41_06945 PF01175 Urocanase Rossmann-like domain J4N41_06945 PF17391 Urocanase N-terminal domain J4N41_06950 PF00491 Arginase family J4N41_06955 PF01979 Amidohydrolase family J4N41_06960 PF00392 Bacterial regulatory proteins, gntR family J4N41_06960 PF07702 UTRA domain J4N41_06965 PF07070 SpoOM protein J4N41_06985 PF05724 Thiopurine S-methyltransferase (TPMT) J4N41_06990 PF02222 ATP-grasp domain J4N41_06995 PF01966 HD domain J4N41_06995 PF11871 Domain of unknown function (DUF3391) J4N41_07000 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J4N41_07000 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region J4N41_07005 PF04172 LrgB-like family J4N41_07010 PF03788 LrgA family J4N41_07015 PF08411 Exonuclease C-terminal J4N41_07015 PF00929 Exonuclease J4N41_07020 PF00375 Sodium:dicarboxylate symporter family J4N41_07025 PF13460 NAD(P)H-binding J4N41_07030 PF01613 Flavin reductase like domain J4N41_07035 PF02277 Phosphoribosyltransferase J4N41_07040 PF02654 Cobalamin-5-phosphate synthase J4N41_07055 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family J4N41_07060 PF01032 FecCD transport family J4N41_07065 PF00005 ABC transporter J4N41_07075 PF00990 Diguanylate cyclase, GGDEF domain J4N41_07090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_07090 PF03466 LysR substrate binding domain J4N41_07095 PF00005 ABC transporter J4N41_07105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_07105 PF09308 LuxQ, periplasmic J4N41_07105 PF00072 Response regulator receiver domain J4N41_07105 PF00512 His Kinase A (phospho-acceptor) domain J4N41_07115 PF01863 Protein of unknown function DUF45 J4N41_07120 PF05971 RNA methyltransferase J4N41_07135 PF00561 alpha/beta hydrolase fold J4N41_07135 PF00364 Biotin-requiring enzyme J4N41_07140 PF04204 Homoserine O-succinyltransferase J4N41_07155 PF00563 EAL domain J4N41_07155 PF12792 CSS motif domain associated with EAL J4N41_07170 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N41_07180 PF01970 Tripartite tricarboxylate transporter TctA family J4N41_07195 PF00069 Protein kinase domain J4N41_07210 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE J4N41_07240 PF00004 ATPase family associated with various cellular activities (AAA) J4N41_07240 PF07724 AAA domain (Cdc48 subfamily) J4N41_07240 PF10431 C-terminal, D2-small domain, of ClpB protein J4N41_07240 PF17871 AAA lid domain J4N41_07265 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath J4N41_07295 PF06715 Gp5 C-terminal repeat (3 copies) J4N41_07295 PF04717 Type VI secretion system, phage-baseplate injector J4N41_07315 PF00285 Citrate synthase, C-terminal domain J4N41_07320 PF00694 Aconitase C-terminal domain J4N41_07320 PF00330 Aconitase family (aconitate hydratase) J4N41_07325 PF04303 PrpF protein J4N41_07330 PF16177 Acetyl-coenzyme A synthetase N-terminus J4N41_07330 PF13193 AMP-binding enzyme C-terminal domain J4N41_07330 PF00501 AMP-binding enzyme J4N41_07350 PF04055 Radical SAM superfamily J4N41_07355 PF06508 Queuosine biosynthesis protein QueC J4N41_07370 PF05736 OprF membrane domain J4N41_07370 PF00691 OmpA family J4N41_07385 PF10672 S-adenosylmethionine-dependent methyltransferase J4N41_07385 PF17785 PUA-like domain J4N41_07390 PF12729 Four helix bundle sensory module for signal transduction J4N41_07390 PF00672 HAMP domain J4N41_07390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N41_07395 PF00708 Acylphosphatase J4N41_07400 PF04358 DsrC like protein J4N41_07405 PF01027 Inhibitor of apoptosis-promoting Bax1 J4N41_07410 PF00005 ABC transporter J4N41_07415 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_07420 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_07425 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N41_07430 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N41_07430 PF14824 Sirohaem biosynthesis protein central J4N41_07430 PF10414 Sirohaem synthase dimerisation region J4N41_07435 PF04461 Protein of unknown function (DUF520) J4N41_07440 PF00793 DAHP synthetase I family J4N41_07445 PF02896 PEP-utilising enzyme, TIM barrel domain J4N41_07445 PF00391 PEP-utilising enzyme, mobile domain J4N41_07445 PF05524 PEP-utilising enzyme, N-terminal J4N41_07465 PF01189 16S rRNA methyltransferase RsmB/F J4N41_07465 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF J4N41_07465 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF J4N41_07470 PF02470 MlaD protein J4N41_07475 PF04403 Paraquat-inducible protein A J4N41_07480 PF00664 ABC transporter transmembrane region J4N41_07480 PF00005 ABC transporter J4N41_07485 PF13185 GAF domain J4N41_07490 PF04352 ProQ/FINO family J4N41_07490 PF17516 ProQ C-terminal domain J4N41_07495 PF00595 PDZ domain J4N41_07495 PF17804 Tail specific protease N-terminal domain J4N41_07495 PF03572 Peptidase family S41 J4N41_07495 PF11818 C-terminal domain of tail specific protease (DUF3340) J4N41_07505 PF11940 Domain of unknown function (DUF3458) Ig-like fold J4N41_07505 PF01433 Peptidase family M1 domain J4N41_07505 PF17432 Domain of unknown function (DUF3458_C) ARM repeats J4N41_07515 PF05088 Bacterial NAD-glutamate dehydrogenase J4N41_07520 PF01180 Dihydroorotate dehydrogenase J4N41_07525 PF07126 Cell-division protein ZapC J4N41_07530 PF10672 S-adenosylmethionine-dependent methyltransferase J4N41_07530 PF02926 THUMP domain J4N41_07530 PF01170 Putative RNA methylase family UPF0020 J4N41_07540 PF00005 ABC transporter J4N41_07540 PF16326 ABC transporter C-terminal domain J4N41_07540 PF12848 ABC transporter J4N41_07550 PF04957 Ribosome modulation factor J4N41_07555 PF07977 FabA-like domain J4N41_07560 PF05362 Lon protease (S16) C-terminal proteolytic domain J4N41_07560 PF13654 AAA domain J4N41_07565 PF17414 MatP C-terminal ribbon-helix-helix domain J4N41_07565 PF06303 MatP N-terminal domain J4N41_07585 PF07968 Leukocidin/Hemolysin toxin family J4N41_07585 PF00652 Ricin-type beta-trefoil lectin domain J4N41_07600 PF01565 FAD binding domain J4N41_07600 PF04030 D-arabinono-1,4-lactone oxidase J4N41_07610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N41_07610 PF12729 Four helix bundle sensory module for signal transduction J4N41_07610 PF00672 HAMP domain J4N41_07615 PF01168 Alanine racemase, N-terminal domain J4N41_07615 PF00842 Alanine racemase, C-terminal domain J4N41_07750 PF00753 Metallo-beta-lactamase superfamily J4N41_07765 PF00115 Cytochrome C and Quinol oxidase polypeptide I J4N41_07780 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J4N41_07780 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP J4N41_07790 PF00403 Heavy-metal-associated domain J4N41_07805 PF00027 Cyclic nucleotide-binding domain J4N41_07805 PF13545 Crp-like helix-turn-helix domain J4N41_07810 PF00582 Universal stress protein family J4N41_07815 PF01171 PP-loop family J4N41_07835 PF00005 ABC transporter J4N41_07835 PF08402 TOBE domain J4N41_07840 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_07845 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_07850 PF13416 Bacterial extracellular solute-binding protein J4N41_07855 PF13416 Bacterial extracellular solute-binding protein J4N41_07860 PF17155 Gammaproteobacterial periplasmic sensor domain J4N41_07860 PF00990 Diguanylate cyclase, GGDEF domain J4N41_07865 PF02146 Sir2 family J4N41_07870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N41_07870 PF00672 HAMP domain J4N41_07870 PF02743 Cache domain J4N41_07875 PF01551 Peptidase family M23 J4N41_07880 PF03466 LysR substrate binding domain J4N41_07880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_07895 PF03591 AzlC protein J4N41_07925 PF00005 ABC transporter J4N41_07925 PF12848 ABC transporter J4N41_07935 PF04542 Sigma-70 region 2 J4N41_07935 PF08281 Sigma-70, region 4 J4N41_07945 PF12727 PBP superfamily domain J4N41_07945 PF12728 Helix-turn-helix domain J4N41_07950 PF12804 MobA-like NTP transferase domain J4N41_07955 PF03205 Molybdopterin guanine dinucleotide synthesis protein B J4N41_07985 PF00480 ROK family J4N41_07990 PF03942 DTW domain J4N41_08000 PF00672 HAMP domain J4N41_08000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N41_08000 PF17202 Single cache domain 3 J4N41_08005 PF00877 NlpC/P60 family J4N41_08015 PF03881 Fructosamine kinase J4N41_08025 PF00677 Lumazine binding domain J4N41_08030 PF01554 MatE J4N41_08070 PF01627 Hpt domain J4N41_08070 PF00512 His Kinase A (phospho-acceptor) domain J4N41_08070 PF17149 Periplasmic sensor domain found in signal transduction proteins J4N41_08070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_08070 PF00072 Response regulator receiver domain J4N41_08070 PF00672 HAMP domain J4N41_08075 PF00072 Response regulator receiver domain J4N41_08075 PF02954 Bacterial regulatory protein, Fis family J4N41_08075 PF00158 Sigma-54 interaction domain J4N41_08085 PF13439 Glycosyltransferase Family 4 J4N41_08085 PF00534 Glycosyl transferases group 1 J4N41_08120 PF13439 Glycosyltransferase Family 4 J4N41_08120 PF00534 Glycosyl transferases group 1 J4N41_08130 PF02397 Bacterial sugar transferase J4N41_08155 PF01420 Type I restriction modification DNA specificity domain J4N41_08160 PF02384 N-6 DNA Methylase J4N41_08165 PF00271 Helicase conserved C-terminal domain J4N41_08165 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) J4N41_08165 PF04851 Type III restriction enzyme, res subunit J4N41_08165 PF08463 EcoEI R protein C-terminal J4N41_08210 PF13340 Putative transposase of IS4/5 family (DUF4096) J4N41_08215 PF13006 Insertion element 4 transposase N-terminal J4N41_08215 PF01609 Transposase DDE domain J4N41_08230 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) J4N41_08240 PF07715 TonB-dependent Receptor Plug Domain J4N41_08240 PF00593 TonB dependent receptor J4N41_08245 PF00501 AMP-binding enzyme J4N41_08245 PF13193 AMP-binding enzyme C-terminal domain J4N41_08245 PF00668 Condensation domain J4N41_08245 PF00550 Phosphopantetheine attachment site J4N41_08250 PF00668 Condensation domain J4N41_08250 PF13193 AMP-binding enzyme C-terminal domain J4N41_08250 PF00501 AMP-binding enzyme J4N41_08250 PF00550 Phosphopantetheine attachment site J4N41_08255 PF03621 MbtH-like protein J4N41_08260 PF00005 ABC transporter J4N41_08265 PF01032 FecCD transport family J4N41_08270 PF01497 Periplasmic binding protein J4N41_08275 PF00005 ABC transporter J4N41_08280 PF01648 4'-phosphopantetheinyl transferase superfamily J4N41_08280 PF17837 4'-phosphopantetheinyl transferase N-terminal domain J4N41_08285 PF02595 Glycerate kinase family J4N41_08290 PF13556 PucR C-terminal helix-turn-helix domain J4N41_08290 PF17853 GGDEF-like domain J4N41_08290 PF05651 Putative sugar diacid recognition J4N41_08295 PF03466 LysR substrate binding domain J4N41_08295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_08305 PF01609 Transposase DDE domain J4N41_08305 PF13006 Insertion element 4 transposase N-terminal J4N41_08310 PF06629 MltA-interacting protein MipA J4N41_08315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_08315 PF00672 HAMP domain J4N41_08315 PF00512 His Kinase A (phospho-acceptor) domain J4N41_08320 PF00072 Response regulator receiver domain J4N41_08320 PF00486 Transcriptional regulatory protein, C terminal J4N41_08335 PF10414 Sirohaem synthase dimerisation region J4N41_08335 PF14824 Sirohaem biosynthesis protein central J4N41_08335 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N41_08340 PF01226 Formate/nitrite transporter J4N41_08345 PF13806 Rieske-like [2Fe-2S] domain J4N41_08350 PF04324 BFD-like [2Fe-2S] binding domain J4N41_08350 PF18267 Rubredoxin NAD+ reductase C-terminal domain J4N41_08350 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N41_08350 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J4N41_08350 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain J4N41_08355 PF08448 PAS fold J4N41_08355 PF00990 Diguanylate cyclase, GGDEF domain J4N41_08360 PF07687 Peptidase dimerisation domain J4N41_08360 PF01546 Peptidase family M20/M25/M40 J4N41_08385 PF13302 Acetyltransferase (GNAT) domain J4N41_08390 PF13673 Acetyltransferase (GNAT) domain J4N41_08435 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) J4N41_08455 PF00072 Response regulator receiver domain J4N41_08455 PF12431 Transcriptional regulator J4N41_08460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_08460 PF00989 PAS fold J4N41_08460 PF17203 Single cache domain 3 J4N41_08460 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain J4N41_08475 PF03544 Gram-negative bacterial TonB protein C-terminal J4N41_08480 PF02472 Biopolymer transport protein ExbD/TolR J4N41_08485 PF01618 MotA/TolQ/ExbB proton channel family J4N41_08490 PF01618 MotA/TolQ/ExbB proton channel family J4N41_08515 PF01259 SAICAR synthetase J4N41_08525 PF04055 Radical SAM superfamily J4N41_08530 PF11230 Protein of unknown function (DUF3029) J4N41_08535 PF00672 HAMP domain J4N41_08535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N41_08540 PF03989 DNA gyrase C-terminal domain, beta-propeller J4N41_08540 PF00521 DNA gyrase/topoisomerase IV, subunit A J4N41_08550 PF03477 ATP cone domain J4N41_08550 PF02867 Ribonucleotide reductase, barrel domain J4N41_08550 PF00317 Ribonucleotide reductase, all-alpha domain J4N41_08555 PF00268 Ribonucleotide reductase, small chain J4N41_08560 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N41_08570 PF00994 Probable molybdopterin binding domain J4N41_08585 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain J4N41_08590 PF03435 Saccharopine dehydrogenase NADP binding domain J4N41_08590 PF16653 Saccharopine dehydrogenase C-terminal domain J4N41_08595 PF00202 Aminotransferase class-III J4N41_08605 PF03422 Carbohydrate binding module (family 6) J4N41_08605 PF02412 Thrombospondin type 3 repeat J4N41_08610 PF06965 Na+/H+ antiporter 1 J4N41_08620 PF02687 FtsX-like permease family J4N41_08620 PF12704 MacB-like periplasmic core domain J4N41_08625 PF00005 ABC transporter J4N41_08630 PF01554 MatE J4N41_08635 PF11066 Protein of unknown function (DUF2867) J4N41_08635 PF13460 NAD(P)H-binding J4N41_08645 PF07690 Major Facilitator Superfamily J4N41_08650 PF01479 S4 domain J4N41_08650 PF00849 RNA pseudouridylate synthase J4N41_08655 PF00271 Helicase conserved C-terminal domain J4N41_08655 PF04851 Type III restriction enzyme, res subunit J4N41_08665 PF00072 Response regulator receiver domain J4N41_08665 PF00486 Transcriptional regulatory protein, C terminal J4N41_08670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_08695 PF00873 AcrB/AcrD/AcrF family J4N41_08700 PF13533 Biotin-lipoyl like J4N41_08715 PF00535 Glycosyl transferase family 2 J4N41_08720 PF01386 Ribosomal L25p family J4N41_08725 PF00717 Peptidase S24-like J4N41_08730 PF11799 impB/mucB/samB family C-terminal domain J4N41_08730 PF00817 impB/mucB/samB family J4N41_08730 PF13438 Domain of unknown function (DUF4113) J4N41_08735 PF00579 tRNA synthetases class I (W and Y) J4N41_08765 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase J4N41_08785 PF03466 LysR substrate binding domain J4N41_08785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_08790 PF13533 Biotin-lipoyl like J4N41_08795 PF07690 Major Facilitator Superfamily J4N41_08815 PF01327 Polypeptide deformylase J4N41_08820 PF13302 Acetyltransferase (GNAT) domain J4N41_08820 PF13673 Acetyltransferase (GNAT) domain J4N41_08820 PF03352 Methyladenine glycosylase J4N41_08820 PF00958 GMP synthase C terminal domain J4N41_08820 PF00117 Glutamine amidotransferase class-I J4N41_08830 PF02264 LamB porin J4N41_08835 PF08212 Lipocalin-like domain J4N41_08845 PF08274 PhnA Zinc-Ribbon J4N41_08845 PF03831 PhnA domain J4N41_08860 PF00589 Phage integrase family J4N41_08860 PF13495 Phage integrase, N-terminal SAM-like domain J4N41_08870 PF03707 Bacterial signalling protein N terminal repeat J4N41_08870 PF00990 Diguanylate cyclase, GGDEF domain J4N41_08870 PF00563 EAL domain J4N41_08900 PF01235 Sodium:alanine symporter family J4N41_08905 PF01810 LysE type translocator J4N41_08910 PF02074 Carboxypeptidase Taq (M32) metallopeptidase J4N41_08915 PF02581 Thiamine monophosphate synthase J4N41_08930 PF02028 BCCT, betaine/carnitine/choline family transporter J4N41_08940 PF00171 Aldehyde dehydrogenase family J4N41_08950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_08950 PF03466 LysR substrate binding domain J4N41_08955 PF00561 alpha/beta hydrolase fold J4N41_08970 PF00815 Histidinol dehydrogenase J4N41_08975 PF03328 HpcH/HpaI aldolase/citrate lyase family J4N41_08980 PF00356 Bacterial regulatory proteins, lacI family J4N41_08985 PF03480 Bacterial extracellular solute-binding protein, family 7 J4N41_08995 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component J4N41_08995 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J4N41_09010 PF00474 Sodium:solute symporter family J4N41_09015 PF00356 Bacterial regulatory proteins, lacI family J4N41_09030 PF00313 'Cold-shock' DNA-binding domain J4N41_09055 PF02321 Outer membrane efflux protein J4N41_09060 PF14376 Haem-binding domain J4N41_09060 PF00034 Cytochrome c J4N41_09060 PF03150 Di-haem cytochrome c peroxidase J4N41_09065 PF09308 LuxQ, periplasmic J4N41_09065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_09065 PF00512 His Kinase A (phospho-acceptor) domain J4N41_09065 PF00072 Response regulator receiver domain J4N41_09075 PF00440 Bacterial regulatory proteins, tetR family J4N41_09080 PF09330 D-lactate dehydrogenase, membrane binding J4N41_09080 PF01565 FAD binding domain J4N41_09085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_09085 PF03466 LysR substrate binding domain J4N41_09090 PF01554 MatE J4N41_09100 PF13407 Periplasmic binding protein domain J4N41_09100 PF00356 Bacterial regulatory proteins, lacI family J4N41_09105 PF00294 pfkB family carbohydrate kinase J4N41_09145 PF03483 B3/4 domain J4N41_09145 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain J4N41_09145 PF01588 Putative tRNA binding domain J4N41_09145 PF03147 Ferredoxin-fold anticodon binding domain J4N41_09145 PF03484 tRNA synthetase B5 domain J4N41_09150 PF01409 tRNA synthetases class II core domain (F) J4N41_09150 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain J4N41_09175 PF07995 Glucose / Sorbosone dehydrogenase J4N41_09185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_09185 PF00512 His Kinase A (phospho-acceptor) domain J4N41_09200 PF04994 TfoX C-terminal domain J4N41_09200 PF04993 TfoX N-terminal domain J4N41_09210 PF03956 Lysine exporter LysO J4N41_09220 PF00282 Pyridoxal-dependent decarboxylase conserved domain J4N41_09225 PF01418 Helix-turn-helix domain, rpiR family J4N41_09225 PF01380 SIS domain J4N41_09230 PF00171 Aldehyde dehydrogenase family J4N41_09230 PF00465 Iron-containing alcohol dehydrogenase J4N41_09235 PF00462 Glutaredoxin J4N41_09240 PF02080 TrkA-C domain J4N41_09240 PF06826 Predicted Permease Membrane Region J4N41_09245 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_09250 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_09255 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N41_09260 PF00005 ABC transporter J4N41_09270 PF01228 Glycine radical J4N41_09270 PF02901 Pyruvate formate lyase-like J4N41_09280 PF00672 HAMP domain J4N41_09280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N41_09285 PF04055 Radical SAM superfamily J4N41_09295 PF03887 YfbU domain J4N41_09300 PF06798 PrkA serine protein kinase C-terminal domain J4N41_09300 PF08298 PrkA AAA domain J4N41_09305 PF04285 Protein of unknown function (DUF444) J4N41_09310 PF04293 SpoVR like protein J4N41_09315 PF02348 Cytidylyltransferase J4N41_09320 PF03966 Trm112p-like protein J4N41_09325 PF02606 Tetraacyldisaccharide-1-P 4'-kinase J4N41_09330 PF00664 ABC transporter transmembrane region J4N41_09330 PF00005 ABC transporter J4N41_09335 PF03772 Competence protein J4N41_09335 PF00753 Metallo-beta-lactamase superfamily J4N41_09345 PF02687 FtsX-like permease family J4N41_09345 PF12704 MacB-like periplasmic core domain J4N41_09350 PF00005 ABC transporter J4N41_09355 PF12704 MacB-like periplasmic core domain J4N41_09355 PF02687 FtsX-like permease family J4N41_09365 PF02559 CarD-like/TRCF domain J4N41_09365 PF00270 DEAD/DEAH box helicase J4N41_09365 PF00271 Helicase conserved C-terminal domain J4N41_09365 PF03461 TRCF domain J4N41_09365 PF17757 UvrB interaction domain J4N41_09380 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N41_09385 PF05728 Uncharacterised protein family (UPF0227) J4N41_09395 PF08139 Prokaryotic membrane lipoprotein lipid attachment site J4N41_09395 PF13036 Peptidoglycan-synthase activator LpoB J4N41_09410 PF01230 HIT domain J4N41_09415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N41_09415 PF00672 HAMP domain J4N41_09425 PF00392 Bacterial regulatory proteins, gntR family J4N41_09425 PF07840 FadR C-terminal domain J4N41_09430 PF06450 Bacterial Na+/H+ antiporter B (NhaB) J4N41_09435 PF02600 Disulfide bond formation protein DsbB J4N41_09440 PF13491 4TM region of DNA translocase FtsK/SpoIIIE J4N41_09440 PF17854 FtsK alpha domain J4N41_09440 PF09397 Ftsk gamma domain J4N41_09440 PF01580 FtsK/SpoIIIE family J4N41_09445 PF01037 Lrp/AsnC ligand binding domain J4N41_09450 PF01262 Alanine dehydrogenase/PNT, C-terminal domain J4N41_09450 PF05222 Alanine dehydrogenase/PNT, N-terminal domain J4N41_09455 PF04217 Protein of unknown function, DUF412 J4N41_09460 PF00871 Acetokinase family J4N41_09465 PF07085 DRTGG domain J4N41_09465 PF01515 Phosphate acetyl/butaryl transferase J4N41_09470 PF13409 Glutathione S-transferase, N-terminal domain J4N41_09475 PF00005 ABC transporter J4N41_09475 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N41_09480 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N41_09480 PF00005 ABC transporter J4N41_09485 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N41_09485 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_09490 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_09495 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N41_09505 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J4N41_09515 PF02743 Cache domain J4N41_09515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N41_09515 PF00672 HAMP domain J4N41_09520 PF04389 Peptidase family M28 J4N41_09520 PF04151 Bacterial pre-peptidase C-terminal domain J4N41_09525 PF04151 Bacterial pre-peptidase C-terminal domain J4N41_09525 PF00082 Subtilase family J4N41_09525 PF05922 Peptidase inhibitor I9 J4N41_09530 PF02743 Cache domain J4N41_09530 PF00672 HAMP domain J4N41_09530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N41_09555 PF00005 ABC transporter J4N41_09555 PF02687 FtsX-like permease family J4N41_09555 PF12704 MacB-like periplasmic core domain J4N41_09560 PF12704 MacB-like periplasmic core domain J4N41_09560 PF02687 FtsX-like permease family J4N41_09560 PF00005 ABC transporter J4N41_09565 PF12704 MacB-like periplasmic core domain J4N41_09565 PF02687 FtsX-like permease family J4N41_09575 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N41_09580 PF04151 Bacterial pre-peptidase C-terminal domain J4N41_09580 PF03413 Peptidase propeptide and YPEB domain J4N41_09580 PF01447 Thermolysin metallopeptidase, catalytic domain J4N41_09580 PF02868 Thermolysin metallopeptidase, alpha-helical domain J4N41_09580 PF07504 Fungalysin/Thermolysin Propeptide Motif J4N41_09590 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain J4N41_09590 PF00326 Prolyl oligopeptidase family J4N41_09605 PF00535 Glycosyl transferase family 2 J4N41_09655 PF01544 CorA-like Mg2+ transporter protein J4N41_09680 PF00990 Diguanylate cyclase, GGDEF domain J4N41_09690 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J4N41_09695 PF09619 Type III secretion system lipoprotein chaperone (YscW) J4N41_09705 PF01037 Lrp/AsnC ligand binding domain J4N41_09705 PF13404 AsnC-type helix-turn-helix domain J4N41_09710 PF00291 Pyridoxal-phosphate dependent enzyme J4N41_09730 PF07690 Major Facilitator Superfamily J4N41_09735 PF03601 Conserved hypothetical protein 698 J4N41_09745 PF00501 AMP-binding enzyme J4N41_09745 PF13193 AMP-binding enzyme C-terminal domain J4N41_09750 PF13378 Enolase C-terminal domain-like J4N41_09755 PF00378 Enoyl-CoA hydratase/isomerase J4N41_09760 PF12697 Alpha/beta hydrolase family J4N41_09765 PF16582 Middle domain of thiamine pyrophosphate J4N41_09765 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J4N41_09765 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J4N41_09770 PF00425 chorismate binding enzyme J4N41_09775 PF00155 Aminotransferase class I and II J4N41_09785 PF13286 Phosphohydrolase-associated domain J4N41_09785 PF01966 HD domain J4N41_09790 PF00962 Adenosine/AMP deaminase J4N41_09805 PF00270 DEAD/DEAH box helicase J4N41_09805 PF00271 Helicase conserved C-terminal domain J4N41_09810 PF13006 Insertion element 4 transposase N-terminal J4N41_09810 PF01609 Transposase DDE domain J4N41_09815 PF01343 Peptidase family S49 J4N41_09815 PF08496 Peptidase family S49 N-terminal J4N41_09820 PF00106 short chain dehydrogenase J4N41_09825 PF02887 Pyruvate kinase, alpha/beta domain J4N41_09825 PF00224 Pyruvate kinase, barrel domain J4N41_09830 PF00480 ROK family J4N41_09835 PF01584 CheW-like domain J4N41_09835 PF00072 Response regulator receiver domain J4N41_09840 PF02696 Uncharacterized ACR, YdiU/UPF0061 family J4N41_09850 PF18364 Molybdopterin oxidoreductase N-terminal domain J4N41_09850 PF01568 Molydopterin dinucleotide binding domain J4N41_09850 PF00384 Molybdopterin oxidoreductase J4N41_09855 PF03264 NapC/NirT cytochrome c family, N-terminal region J4N41_09860 PF06796 Periplasmic nitrate reductase protein NapE J4N41_09865 PF03649 Uncharacterised protein family (UPF0014) J4N41_09875 PF01226 Formate/nitrite transporter J4N41_09900 PF17871 AAA lid domain J4N41_09900 PF07724 AAA domain (Cdc48 subfamily) J4N41_09900 PF00004 ATPase family associated with various cellular activities (AAA) J4N41_09900 PF10431 C-terminal, D2-small domain, of ClpB protein J4N41_09900 PF02861 Clp amino terminal domain, pathogenicity island component J4N41_09905 PF02617 ATP-dependent Clp protease adaptor protein ClpS J4N41_09910 PF00313 'Cold-shock' DNA-binding domain J4N41_09915 PF03971 Monomeric isocitrate dehydrogenase J4N41_09920 PF00849 RNA pseudouridylate synthase J4N41_09925 PF01336 OB-fold nucleic acid binding domain J4N41_09925 PF02938 GAD domain J4N41_09925 PF00152 tRNA synthetases class II (D, K and N) J4N41_09930 PF01904 Protein of unknown function DUF72 J4N41_09935 PF13649 Methyltransferase domain J4N41_09940 PF08003 Protein of unknown function (DUF1698) J4N41_09945 PF08443 RimK-like ATP-grasp domain J4N41_09945 PF18030 RimK PreATP-grasp domain J4N41_09960 PF04310 MukB N-terminal J4N41_09960 PF16330 MukB hinge domain J4N41_09965 PF04288 MukE-like family J4N41_09970 PF17193 MukF C-terminal domain J4N41_09970 PF03882 MukF winged-helix domain J4N41_09970 PF17192 MukF middle domain J4N41_09975 PF13847 Methyltransferase domain J4N41_09980 PF02698 DUF218 domain J4N41_09985 PF00072 Response regulator receiver domain J4N41_09985 PF00486 Transcriptional regulatory protein, C terminal J4N41_09990 PF02613 Nitrate reductase delta subunit J4N41_09995 PF00356 Bacterial regulatory proteins, lacI family J4N41_10000 PF04994 TfoX C-terminal domain J4N41_10000 PF04993 TfoX N-terminal domain J4N41_10005 PF13006 Insertion element 4 transposase N-terminal J4N41_10005 PF01609 Transposase DDE domain J4N41_10025 PF00534 Glycosyl transferases group 1 J4N41_10025 PF08323 Starch synthase catalytic domain J4N41_10030 PF00483 Nucleotidyl transferase J4N41_10035 PF08272 Topoisomerase I zinc-ribbon-like J4N41_10035 PF01131 DNA topoisomerase J4N41_10035 PF01751 Toprim domain J4N41_10035 PF01396 Topoisomerase DNA binding C4 zinc finger J4N41_10040 PF10692 Protein of unknown function (DUF2498) J4N41_10045 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J4N41_10055 PF03588 Leucyl/phenylalanyl-tRNA protein transferase J4N41_10060 PF04377 Arginine-tRNA-protein transferase, C terminus J4N41_10060 PF04376 Arginine-tRNA-protein transferase, N terminus J4N41_10065 PF01176 Translation initiation factor 1A / IF-1 J4N41_10070 PF00265 Thymidine kinase J4N41_10075 PF01406 tRNA synthetases class I (C) catalytic domain J4N41_10075 PF09190 DALR domain J4N41_10080 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J4N41_10085 PF00149 Calcineurin-like phosphoesterase J4N41_10090 PF08668 HDOD domain J4N41_10090 PF00563 EAL domain J4N41_10095 PF02810 SEC-C motif J4N41_10100 PF07023 Protein of unknown function (DUF1315) J4N41_10110 PF01641 SelR domain J4N41_10115 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J4N41_10115 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J4N41_10120 PF01263 Aldose 1-epimerase J4N41_10125 PF13847 Methyltransferase domain J4N41_10140 PF00245 Alkaline phosphatase J4N41_10145 PF03472 Autoinducer binding domain J4N41_10145 PF00196 Bacterial regulatory proteins, luxR family J4N41_10155 PF07690 Major Facilitator Superfamily J4N41_10165 PF00970 Oxidoreductase FAD-binding domain J4N41_10165 PF00175 Oxidoreductase NAD-binding domain J4N41_10170 PF03692 Putative zinc- or iron-chelating domain J4N41_10180 PF03692 Putative zinc- or iron-chelating domain J4N41_10185 PF13406 Transglycosylase SLT domain J4N41_10190 PF05166 YcgL domain J4N41_10195 PF05209 Septum formation inhibitor MinC, N-terminal domain J4N41_10195 PF03775 Septum formation inhibitor MinC, C-terminal domain J4N41_10200 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J4N41_10205 PF03776 Septum formation topological specificity factor MinE J4N41_10210 PF00465 Iron-containing alcohol dehydrogenase J4N41_10210 PF00171 Aldehyde dehydrogenase family J4N41_10215 PF01914 MarC family integral membrane protein J4N41_10220 PF00520 Ion transport protein J4N41_10220 PF00027 Cyclic nucleotide-binding domain J4N41_10225 PF02774 Semialdehyde dehydrogenase, dimerisation domain J4N41_10225 PF01118 Semialdehyde dehydrogenase, NAD binding domain J4N41_10230 PF03553 Na+/H+ antiporter family J4N41_10235 PF07702 UTRA domain J4N41_10235 PF00392 Bacterial regulatory proteins, gntR family J4N41_10240 PF00367 phosphotransferase system, EIIB J4N41_10240 PF02378 Phosphotransferase system, EIIC J4N41_10245 PF08244 Glycosyl hydrolases family 32 C terminal J4N41_10245 PF00251 Glycosyl hydrolases family 32 N-terminal domain J4N41_10255 PF04245 37-kD nucleoid-associated bacterial protein J4N41_10260 PF07208 Protein of unknown function (DUF1414) J4N41_10265 PF00884 Sulfatase J4N41_10265 PF11893 Domain of unknown function (DUF3413) J4N41_10285 PF13344 Haloacid dehalogenase-like hydrolase J4N41_10285 PF00293 NUDIX domain J4N41_10290 PF00850 Histone deacetylase domain J4N41_10295 PF00106 short chain dehydrogenase J4N41_10300 PF01161 Phosphatidylethanolamine-binding protein J4N41_10310 PF01131 DNA topoisomerase J4N41_10310 PF01751 Toprim domain J4N41_10315 PF00462 Glutaredoxin J4N41_10320 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain J4N41_10320 PF02777 Iron/manganese superoxide dismutases, C-terminal domain J4N41_10335 PF01451 Low molecular weight phosphotyrosine protein phosphatase J4N41_10340 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP J4N41_10340 PF12557 Cob(I)alamin adenosyltransferase N terminal J4N41_10360 PF01266 FAD dependent oxidoreductase J4N41_10360 PF16901 C-terminal domain of alpha-glycerophosphate oxidase J4N41_10370 PF05378 Hydantoinase/oxoprolinase N-terminal region J4N41_10370 PF01968 Hydantoinase/oxoprolinase J4N41_10380 PF01074 Glycosyl hydrolases family 38 N-terminal domain J4N41_10380 PF09261 Alpha mannosidase middle domain J4N41_10380 PF18438 Glycosyl hydrolases family 38 C-terminal domain 1 J4N41_10380 PF17677 Glycosyl hydrolases family 38 C-terminal beta sandwich domain J4N41_10380 PF07748 Glycosyl hydrolases family 38 C-terminal domain J4N41_10385 PF00480 ROK family J4N41_10390 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase J4N41_10400 PF00480 ROK family J4N41_10405 PF05170 AsmA family J4N41_10410 PF00485 Phosphoribulokinase / Uridine kinase family J4N41_10415 PF10609 NUBPL iron-transfer P-loop NTPase J4N41_10420 PF09334 tRNA synthetases class I (M) J4N41_10420 PF01588 Putative tRNA binding domain J4N41_10430 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J4N41_10430 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain J4N41_10435 PF01048 Phosphorylase superfamily J4N41_10440 PF00403 Heavy-metal-associated domain J4N41_10445 PF01554 MatE J4N41_10450 PF00571 CBS domain J4N41_10450 PF01368 DHH family J4N41_10450 PF02272 DHHA1 domain J4N41_10450 PF01743 Poly A polymerase head domain J4N41_10460 PF00990 Diguanylate cyclase, GGDEF domain J4N41_10465 PF02391 MoaE protein J4N41_10470 PF02597 ThiS family J4N41_10475 PF01967 MoaC family J4N41_10480 PF00994 Probable molybdopterin binding domain J4N41_10485 PF06463 Molybdenum Cofactor Synthesis C J4N41_10485 PF04055 Radical SAM superfamily J4N41_10490 PF01933 Uncharacterised protein family UPF0052 J4N41_10495 PF01627 Hpt domain J4N41_10500 PF02954 Bacterial regulatory protein, Fis family J4N41_10500 PF00072 Response regulator receiver domain J4N41_10500 PF00158 Sigma-54 interaction domain J4N41_10505 PF04851 Type III restriction enzyme, res subunit J4N41_10505 PF02151 UvrB/uvrC motif J4N41_10505 PF12344 Ultra-violet resistance protein B J4N41_10505 PF17757 UvrB interaction domain J4N41_10505 PF00271 Helicase conserved C-terminal domain J4N41_10530 PF01551 Peptidase family M23 J4N41_10530 PF04225 Opacity-associated protein A LysM-like domain J4N41_10545 PF18269 T3SS EscN ATPase C-terminal domain J4N41_10545 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N41_10555 PF01706 FliG C-terminal domain J4N41_10555 PF14841 FliG middle domain J4N41_10555 PF14842 FliG N-terminal domain J4N41_10560 PF08345 Flagellar M-ring protein C-terminal J4N41_10560 PF01514 Secretory protein of YscJ/FliF family J4N41_10565 PF02049 Flagellar hook-basal body complex protein FliE J4N41_10570 PF00158 Sigma-54 interaction domain J4N41_10570 PF00072 Response regulator receiver domain J4N41_10570 PF02954 Bacterial regulatory protein, Fis family J4N41_10575 PF04972 BON domain J4N41_10575 PF00691 OmpA family J4N41_10585 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J4N41_10590 PF00813 FliP family J4N41_10595 PF01313 Bacterial export proteins, family 3 J4N41_10600 PF01311 Bacterial export proteins, family 1 J4N41_10605 PF01312 FlhB HrpN YscU SpaS Family J4N41_10610 PF00771 FHIPEP family J4N41_10620 PF00700 Bacterial flagellin C-terminal helical region J4N41_10620 PF00669 Bacterial flagellin N-terminal helical region J4N41_10625 PF02465 Flagellar hook-associated protein 2 N-terminus J4N41_10625 PF07196 Flagellin hook IN motif J4N41_10625 PF07195 Flagellar hook-associated protein 2 C-terminus J4N41_10630 PF02561 Flagellar protein FliS J4N41_10645 PF03748 Flagellar basal body-associated protein FliL J4N41_10650 PF04545 Sigma-70, region 4 J4N41_10650 PF04542 Sigma-70 region 2 J4N41_10655 PF01618 MotA/TolQ/ExbB proton channel family J4N41_10660 PF00691 OmpA family J4N41_10660 PF13677 Membrane MotB of proton-channel complex MotA/MotB J4N41_10685 PF10135 Rod binding protein J4N41_10685 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase J4N41_10690 PF02119 Flagellar P-ring protein J4N41_10695 PF02107 Flagellar L-ring protein J4N41_10700 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N41_10700 PF00460 Flagella basal body rod protein J4N41_10705 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N41_10705 PF00460 Flagella basal body rod protein J4N41_10710 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N41_10710 PF00460 Flagella basal body rod protein J4N41_10710 PF07559 Flagellar basal body protein FlaE J4N41_10715 PF03963 Flagellar hook capping protein - N-terminal region J4N41_10715 PF13860 FlgD Ig-like domain J4N41_10715 PF13861 FlgD Tudor-like domain J4N41_10720 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N41_10720 PF00460 Flagella basal body rod protein J4N41_10725 PF00460 Flagella basal body rod protein J4N41_10745 PF01476 LysM domain J4N41_10745 PF01464 Transglycosylase SLT domain J4N41_10750 PF02508 Rnf-Nqr subunit, membrane protein J4N41_10755 PF04060 Putative Fe-S cluster J4N41_10760 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit J4N41_10760 PF12838 4Fe-4S dicluster domain J4N41_10760 PF13375 RnfC Barrel sandwich hybrid domain J4N41_10760 PF10531 SLBB domain J4N41_10765 PF03116 NQR2, RnfD, RnfE family J4N41_10770 PF04205 FMN-binding domain J4N41_10775 PF02508 Rnf-Nqr subunit, membrane protein J4N41_10780 PF10576 Iron-sulfur binding domain of endonuclease III J4N41_10780 PF00633 Helix-hairpin-helix motif J4N41_10780 PF00730 HhH-GPD superfamily base excision DNA repair protein J4N41_10785 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N41_10790 PF10952 Protein of unknown function (DUF2753) J4N41_10795 PF18393 MotY N-terminal domain J4N41_10795 PF00691 OmpA family J4N41_10800 PF00929 Exonuclease J4N41_10805 PF13726 Na+-H+ antiporter family J4N41_10805 PF03553 Na+/H+ antiporter family J4N41_10810 PF06804 NlpB/DapX lipoprotein J4N41_10815 PF00701 Dihydrodipicolinate synthetase family J4N41_10820 PF01842 ACT domain J4N41_10825 PF00578 AhpC/TSA family J4N41_10830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N41_10830 PF00672 HAMP domain J4N41_10830 PF02743 Cache domain J4N41_10835 PF01594 AI-2E family transporter J4N41_10845 PF01435 Peptidase family M48 J4N41_10845 PF13181 Tetratricopeptide repeat J4N41_10850 PF03960 ArsC family J4N41_10855 PF03358 NADPH-dependent FMN reductase J4N41_10870 PF00860 Permease family J4N41_10875 PF04073 Aminoacyl-tRNA editing domain J4N41_10880 PF02872 5'-nucleotidase, C-terminal domain J4N41_10880 PF00149 Calcineurin-like phosphoesterase J4N41_10885 PF00793 DAHP synthetase I family J4N41_10890 PF13369 Transglutaminase-like superfamily J4N41_10900 PF17827 PrmC N-terminal domain J4N41_10900 PF13847 Methyltransferase domain J4N41_10905 PF00472 RF-1 domain J4N41_10905 PF03462 PCRF domain J4N41_10910 PF01488 Shikimate / quinate 5-dehydrogenase J4N41_10910 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain J4N41_10910 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain J4N41_10915 PF03550 Outer membrane lipoprotein LolB J4N41_10920 PF08544 GHMP kinases C terminal J4N41_10920 PF00288 GHMP kinases N terminal domain J4N41_10925 PF14572 Phosphoribosyl synthetase-associated domain J4N41_10925 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase J4N41_10930 PF01195 Peptidyl-tRNA hydrolase J4N41_10935 PF01926 50S ribosome-binding GTPase J4N41_10935 PF06071 Protein of unknown function (DUF933) J4N41_11040 PF00669 Bacterial flagellin N-terminal helical region J4N41_11040 PF07196 Flagellin hook IN motif J4N41_11040 PF00700 Bacterial flagellin C-terminal helical region J4N41_11045 PF00669 Bacterial flagellin N-terminal helical region J4N41_11045 PF00700 Bacterial flagellin C-terminal helical region J4N41_11045 PF07196 Flagellin hook IN motif J4N41_11050 PF00700 Bacterial flagellin C-terminal helical region J4N41_11050 PF00669 Bacterial flagellin N-terminal helical region J4N41_11055 PF07196 Flagellin hook IN motif J4N41_11055 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N41_11060 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase J4N41_11060 PF10135 Rod binding protein J4N41_11065 PF02119 Flagellar P-ring protein J4N41_11070 PF02107 Flagellar L-ring protein J4N41_11075 PF00460 Flagella basal body rod protein J4N41_11075 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N41_11080 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N41_11080 PF00460 Flagella basal body rod protein J4N41_11085 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N41_11085 PF07559 Flagellar basal body protein FlaE J4N41_11085 PF00460 Flagella basal body rod protein J4N41_11090 PF03963 Flagellar hook capping protein - N-terminal region J4N41_11090 PF13860 FlgD Ig-like domain J4N41_11090 PF13861 FlgD Tudor-like domain J4N41_11095 PF00460 Flagella basal body rod protein J4N41_11095 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N41_11100 PF00460 Flagella basal body rod protein J4N41_11105 PF01739 CheR methyltransferase, SAM binding domain J4N41_11105 PF03705 CheR methyltransferase, all-alpha domain J4N41_11110 PF01584 CheW-like domain J4N41_11110 PF00072 Response regulator receiver domain J4N41_11120 PF04316 Anti-sigma-28 factor, FlgM J4N41_11150 PF08241 Methyltransferase domain J4N41_11160 PF01389 OmpA-like transmembrane domain J4N41_11160 PF00691 OmpA family J4N41_11165 PF01389 OmpA-like transmembrane domain J4N41_11165 PF00691 OmpA family J4N41_11170 PF00749 tRNA synthetases class I (E and Q), catalytic domain J4N41_11175 PF00403 Heavy-metal-associated domain J4N41_11185 PF01728 FtsJ-like methyltransferase J4N41_11185 PF18125 RlmM ferredoxin-like domain J4N41_11200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_11200 PF03466 LysR substrate binding domain J4N41_11205 PF02568 Thiamine biosynthesis protein (ThiI) J4N41_11205 PF02926 THUMP domain J4N41_11210 PF13677 Membrane MotB of proton-channel complex MotA/MotB J4N41_11210 PF00691 OmpA family J4N41_11215 PF01618 MotA/TolQ/ExbB proton channel family J4N41_11220 PF02609 Exonuclease VII small subunit J4N41_11225 PF00348 Polyprenyl synthetase J4N41_11230 PF13292 1-deoxy-D-xylulose-5-phosphate synthase J4N41_11230 PF02779 Transketolase, pyrimidine binding domain J4N41_11230 PF02780 Transketolase, C-terminal domain J4N41_11235 PF00849 RNA pseudouridylate synthase J4N41_11240 PF04287 tRNA pseudouridine synthase C J4N41_11255 PF13302 Acetyltransferase (GNAT) domain J4N41_11265 PF00549 CoA-ligase J4N41_11265 PF02629 CoA binding domain J4N41_11270 PF00549 CoA-ligase J4N41_11270 PF08442 ATP-grasp domain J4N41_11275 PF02817 e3 binding domain J4N41_11275 PF00364 Biotin-requiring enzyme J4N41_11275 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J4N41_11280 PF16870 2-oxoglutarate dehydrogenase C-terminal J4N41_11280 PF00676 Dehydrogenase E1 component J4N41_11280 PF02779 Transketolase, pyrimidine binding domain J4N41_11280 PF16078 2-oxoglutarate dehydrogenase N-terminus J4N41_11285 PF13085 2Fe-2S iron-sulfur cluster binding domain J4N41_11290 PF00890 FAD binding domain J4N41_11290 PF02910 Fumarate reductase flavoprotein C-term J4N41_11295 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit J4N41_11300 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit J4N41_11305 PF00285 Citrate synthase, C-terminal domain J4N41_11310 PF01784 NIF3 (NGG1p interacting factor 3) J4N41_11320 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J4N41_11320 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J4N41_11320 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J4N41_11320 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J4N41_11325 PF03925 SeqA protein C-terminal domain J4N41_11325 PF17206 SeqA protein N-terminal domain J4N41_11330 PF12697 Alpha/beta hydrolase family J4N41_11340 PF00258 Flavodoxin J4N41_11345 PF12826 Helix-hairpin-helix motif J4N41_11345 PF03120 NAD-dependent DNA ligase OB-fold domain J4N41_11345 PF03119 NAD-dependent DNA ligase C4 zinc finger domain J4N41_11345 PF00533 BRCA1 C Terminus (BRCT) domain J4N41_11345 PF01653 NAD-dependent DNA ligase adenylation domain J4N41_11350 PF04354 ZipA, C-terminal FtsZ-binding domain J4N41_11360 PF00291 Pyridoxal-phosphate dependent enzyme J4N41_11365 PF00381 PTS HPr component phosphorylation site J4N41_11370 PF00391 PEP-utilising enzyme, mobile domain J4N41_11370 PF02896 PEP-utilising enzyme, TIM barrel domain J4N41_11370 PF05524 PEP-utilising enzyme, N-terminal J4N41_11375 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 J4N41_11380 PF01494 FAD binding domain J4N41_11385 PF00919 Uncharacterized protein family UPF0004 J4N41_11385 PF01938 TRAM domain J4N41_11385 PF04055 Radical SAM superfamily J4N41_11390 PF02562 PhoH-like protein J4N41_11395 PF02130 Uncharacterized protein family UPF0054 J4N41_11400 PF00571 CBS domain J4N41_11400 PF03471 Transporter associated domain J4N41_11405 PF00795 Carbon-nitrogen hydrolase J4N41_11410 PF07295 Zinc-ribbon containing domain J4N41_11415 PF08264 Anticodon-binding domain of tRNA J4N41_11415 PF13603 Leucyl-tRNA synthetase, Domain 2 J4N41_11415 PF00133 tRNA synthetases class I (I, L, M and V) J4N41_11420 PF04390 Lipopolysaccharide-assembly J4N41_11425 PF06144 DNA polymerase III, delta subunit J4N41_11425 PF14840 Processivity clamp loader gamma complex DNA pol III C-term J4N41_11435 PF02590 Predicted SPOUT methyltransferase J4N41_11440 PF03717 Penicillin-binding Protein dimerisation domain J4N41_11440 PF00905 Penicillin binding protein transpeptidase domain J4N41_11445 PF01098 Cell cycle protein J4N41_11450 PF05036 Sporulation related domain J4N41_11450 PF03330 Lytic transglycolase J4N41_11455 PF00768 D-alanyl-D-alanine carboxypeptidase J4N41_11455 PF07943 Penicillin-binding protein 5, C-terminal domain J4N41_11460 PF04359 Protein of unknown function (DUF493) J4N41_11465 PF03099 Biotin/lipoate A/B protein ligase family J4N41_11470 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family J4N41_11470 PF04055 Radical SAM superfamily J4N41_11485 PF00464 Serine hydroxymethyltransferase J4N41_11495 PF00873 AcrB/AcrD/AcrF family J4N41_11500 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N41_11525 PF16657 Maltogenic Amylase, C-terminal domain J4N41_11525 PF00128 Alpha amylase, catalytic domain J4N41_11530 PF00367 phosphotransferase system, EIIB J4N41_11530 PF02378 Phosphotransferase system, EIIC J4N41_11535 PF00356 Bacterial regulatory proteins, lacI family J4N41_11550 PF00005 ABC transporter J4N41_11550 PF09383 NIL domain J4N41_11555 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_11560 PF03180 NLPA lipoprotein J4N41_11565 PF03806 AbgT putative transporter family J4N41_11570 PF00444 Ribosomal protein L36 J4N41_11575 PF01197 Ribosomal protein L31 J4N41_11580 PF01980 tRNA-methyltransferase O J4N41_11580 PF18389 TrmO C-terminal domain J4N41_11585 PF03129 Anticodon binding domain J4N41_11585 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J4N41_11585 PF04073 Aminoacyl-tRNA editing domain J4N41_11590 PF13230 Glutamine amidotransferases class-II J4N41_11595 PF13580 SIS domain J4N41_11600 PF09317 Domain of unknown function (DUF1974) J4N41_11600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J4N41_11600 PF02770 Acyl-CoA dehydrogenase, middle domain J4N41_11600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J4N41_11610 PF00929 Exonuclease J4N41_11615 PF00075 RNase H J4N41_11620 PF08241 Methyltransferase domain J4N41_11625 PF16123 Hydroxyacylglutathione hydrolase C-terminus J4N41_11625 PF00753 Metallo-beta-lactamase superfamily J4N41_11630 PF01464 Transglycosylase SLT domain J4N41_11630 PF01476 LysM domain J4N41_11640 PF03372 Endonuclease/Exonuclease/phosphatase family J4N41_11645 PF00543 Nitrogen regulatory protein P-II J4N41_11650 PF00034 Cytochrome c J4N41_11655 PF09179 TilS substrate binding domain J4N41_11655 PF11734 TilS substrate C-terminal domain J4N41_11655 PF01171 PP-loop family J4N41_11660 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit J4N41_11665 PF07733 Bacterial DNA polymerase III alpha NTPase domain J4N41_11665 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J4N41_11665 PF14579 Helix-hairpin-helix motif J4N41_11665 PF02811 PHP domain J4N41_11665 PF01336 OB-fold nucleic acid binding domain J4N41_11670 PF01351 Ribonuclease HII J4N41_11675 PF02684 Lipid-A-disaccharide synthetase J4N41_11680 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 J4N41_11680 PF00132 Bacterial transferase hexapeptide (six repeats) J4N41_11685 PF07977 FabA-like domain J4N41_11690 PF00132 Bacterial transferase hexapeptide (six repeats) J4N41_11690 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD J4N41_11695 PF03938 Outer membrane protein (OmpH-like) J4N41_11700 PF01103 Surface antigen J4N41_11700 PF07244 Surface antigen variable number repeat J4N41_11705 PF17820 PDZ domain J4N41_11705 PF02163 Peptidase family M50 J4N41_11710 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain J4N41_11710 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase J4N41_11710 PF13288 DXP reductoisomerase C-terminal domain J4N41_11720 PF01255 Putative undecaprenyl diphosphate synthase J4N41_11725 PF01765 Ribosome recycling factor J4N41_11730 PF00696 Amino acid kinase family J4N41_11735 PF00889 Elongation factor TS J4N41_11740 PF00318 Ribosomal protein S2 J4N41_11745 PF00557 Metallopeptidase family M24 J4N41_11750 PF01909 Nucleotidyltransferase domain J4N41_11750 PF08335 GlnD PII-uridylyltransferase J4N41_11750 PF01966 HD domain J4N41_11755 PF11944 Protein of unknown function (DUF3461) J4N41_11760 PF04608 Phosphatidylglycerophosphatase A J4N41_11765 PF02769 AIR synthase related protein, C-terminal domain J4N41_11765 PF00586 AIR synthase related protein, N-terminal domain J4N41_11770 PF01029 NusB family J4N41_11775 PF00885 6,7-dimethyl-8-ribityllumazine synthase J4N41_11780 PF00925 GTP cyclohydrolase II J4N41_11780 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase J4N41_11785 PF00677 Lumazine binding domain J4N41_11790 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J4N41_11790 PF01872 RibD C-terminal domain J4N41_11795 PF03477 ATP cone domain J4N41_11800 PF00171 Aldehyde dehydrogenase family J4N41_11805 PF00696 Amino acid kinase family J4N41_11805 PF01472 PUA domain J4N41_11810 PF07417 Sigma factor-binding transcriptional regulator Crl J4N41_11815 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) J4N41_11820 PF00156 Phosphoribosyl transferase domain J4N41_11825 PF00860 Permease family J4N41_11830 PF07687 Peptidase dimerisation domain J4N41_11830 PF01546 Peptidase family M20/M25/M40 J4N41_11835 PF18030 RimK PreATP-grasp domain J4N41_11835 PF08443 RimK-like ATP-grasp domain J4N41_11840 PF08443 RimK-like ATP-grasp domain J4N41_11840 PF18030 RimK PreATP-grasp domain J4N41_11850 PF00209 Sodium:neurotransmitter symporter family J4N41_11855 PF06483 Chitinase C J4N41_11855 PF00704 Glycosyl hydrolases family 18 J4N41_11865 PF03449 Transcription elongation factor, N-terminal J4N41_11865 PF01272 Transcription elongation factor, GreA/GreB, C-term J4N41_11870 PF00271 Helicase conserved C-terminal domain J4N41_11870 PF00570 HRDC domain J4N41_11870 PF16124 RecQ zinc-binding J4N41_11870 PF09382 RQC domain J4N41_11870 PF00270 DEAD/DEAH box helicase J4N41_11875 PF00817 impB/mucB/samB family J4N41_11875 PF11799 impB/mucB/samB family C-terminal domain J4N41_11880 PF00990 Diguanylate cyclase, GGDEF domain J4N41_11880 PF00072 Response regulator receiver domain J4N41_11890 PF02424 ApbE family J4N41_11895 PF00970 Oxidoreductase FAD-binding domain J4N41_11895 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N41_11895 PF00175 Oxidoreductase NAD-binding domain J4N41_11900 PF02508 Rnf-Nqr subunit, membrane protein J4N41_11905 PF02508 Rnf-Nqr subunit, membrane protein J4N41_11910 PF04205 FMN-binding domain J4N41_11915 PF03116 NQR2, RnfD, RnfE family J4N41_11920 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) J4N41_11920 PF11973 NQRA C-terminal domain J4N41_11925 PF01722 BolA-like protein J4N41_11930 PF05175 Methyltransferase small domain J4N41_11940 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J4N41_11960 PF04545 Sigma-70, region 4 J4N41_11960 PF04542 Sigma-70 region 2 J4N41_11970 PF03502 Nucleoside-specific channel-forming protein, Tsx J4N41_11975 PF08546 Ketopantoate reductase PanE/ApbA C terminal J4N41_11975 PF02558 Ketopantoate reductase PanE/ApbA J4N41_11980 PF01965 DJ-1/PfpI family J4N41_11985 PF00266 Aminotransferase class-V J4N41_11990 PF18073 Rubredoxin metal binding domain J4N41_12000 PF18429 Domain of unknown function (DUF5609) J4N41_12010 PF01048 Phosphorylase superfamily J4N41_12015 PF01676 Metalloenzyme superfamily J4N41_12020 PF02885 Glycosyl transferase family, helical bundle domain J4N41_12020 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain J4N41_12020 PF00591 Glycosyl transferase family, a/b domain J4N41_12025 PF01791 DeoC/LacD family aldolase J4N41_12035 PF01773 Na+ dependent nucleoside transporter N-terminus J4N41_12035 PF07670 Nucleoside recognition J4N41_12035 PF07662 Na+ dependent nucleoside transporter C-terminus J4N41_12040 PF01026 TatD related DNase J4N41_12050 PF03883 Peroxide stress protein YaaA J4N41_12055 PF01235 Sodium:alanine symporter family J4N41_12070 PF03167 Uracil DNA glycosylase superfamily J4N41_12075 PF01261 Xylose isomerase-like TIM barrel J4N41_12080 PF01228 Glycine radical J4N41_12085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_12085 PF03466 LysR substrate binding domain J4N41_12090 PF01925 Sulfite exporter TauE/SafE J4N41_12095 PF02142 MGS-like domain J4N41_12095 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain J4N41_12095 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J4N41_12100 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain J4N41_12100 PF00117 Glutamine amidotransferase class-I J4N41_12105 PF01113 Dihydrodipicolinate reductase, N-terminus J4N41_12105 PF05173 Dihydrodipicolinate reductase, C-terminus J4N41_12110 PF00293 NUDIX domain J4N41_12115 PF02810 SEC-C motif J4N41_12115 PF07516 SecA Wing and Scaffold domain J4N41_12115 PF07517 SecA DEAD-like domain J4N41_12115 PF01043 SecA preprotein cross-linking domain J4N41_12120 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase J4N41_12125 PF12327 FtsZ family, C-terminal domain J4N41_12125 PF00091 Tubulin/FtsZ family, GTPase domain J4N41_12130 PF02491 SHS2 domain inserted in FTSA J4N41_12135 PF08478 POTRA domain, FtsQ-type J4N41_12135 PF03799 Cell division protein FtsQ J4N41_12140 PF02875 Mur ligase family, glutamate ligase domain J4N41_12140 PF01225 Mur ligase family, catalytic domain J4N41_12140 PF08245 Mur ligase middle domain J4N41_12145 PF04101 Glycosyltransferase family 28 C-terminal domain J4N41_12145 PF03033 Glycosyltransferase family 28 N-terminal domain J4N41_12150 PF01098 Cell cycle protein J4N41_12155 PF02875 Mur ligase family, glutamate ligase domain J4N41_12155 PF08245 Mur ligase middle domain J4N41_12160 PF00953 Glycosyl transferase family 4 J4N41_12160 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 J4N41_12165 PF02875 Mur ligase family, glutamate ligase domain J4N41_12165 PF01225 Mur ligase family, catalytic domain J4N41_12165 PF08245 Mur ligase middle domain J4N41_12170 PF08245 Mur ligase middle domain J4N41_12170 PF02875 Mur ligase family, glutamate ligase domain J4N41_12170 PF01225 Mur ligase family, catalytic domain J4N41_12175 PF03717 Penicillin-binding Protein dimerisation domain J4N41_12175 PF00905 Penicillin binding protein transpeptidase domain J4N41_12180 PF04999 Cell division protein FtsL J4N41_12185 PF01795 MraW methylase family J4N41_12195 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N41_12200 PF04348 LppC putative lipoprotein J4N41_12205 PF02021 Uncharacterised protein family UPF0102 J4N41_12210 PF13580 SIS domain J4N41_12215 PF04972 BON domain J4N41_12220 PF04386 Stringent starvation protein B J4N41_12225 PF00043 Glutathione S-transferase, C-terminal domain J4N41_12225 PF02798 Glutathione S-transferase, N-terminal domain J4N41_12230 PF02167 Cytochrome C1 family J4N41_12235 PF00033 Cytochrome b/b6/petB J4N41_12235 PF00032 Cytochrome b(C-terminal)/b6/petD J4N41_12240 PF00355 Rieske [2Fe-2S] domain J4N41_12240 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal J4N41_12245 PF00380 Ribosomal protein S9/S16 J4N41_12250 PF00572 Ribosomal protein L13 J4N41_12255 PF03969 AFG1-like ATPase J4N41_12260 PF06295 Protein of unknown function (DUF1043) J4N41_12265 PF00595 PDZ domain J4N41_12270 PF13180 PDZ domain J4N41_12275 PF03989 DNA gyrase C-terminal domain, beta-propeller J4N41_12275 PF00521 DNA gyrase/topoisomerase IV, subunit A J4N41_12280 PF00986 DNA gyrase B subunit, carboxyl terminus J4N41_12280 PF00204 DNA gyrase B J4N41_12280 PF01751 Toprim domain J4N41_12280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_12285 PF05728 Uncharacterised protein family (UPF0227) J4N41_12290 PF00149 Calcineurin-like phosphoesterase J4N41_12295 PF06853 Protein of unknown function (DUF1249) J4N41_12300 PF00293 NUDIX domain J4N41_12305 PF02321 Outer membrane efflux protein J4N41_12315 PF00989 PAS fold J4N41_12315 PF01627 Hpt domain J4N41_12315 PF18415 Histidine kinase receptor ArcB trans-membrane domain J4N41_12315 PF00072 Response regulator receiver domain J4N41_12315 PF00512 His Kinase A (phospho-acceptor) domain J4N41_12315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_12320 PF00563 EAL domain J4N41_12320 PF01590 GAF domain J4N41_12320 PF00990 Diguanylate cyclase, GGDEF domain J4N41_12320 PF00360 Phytochrome region J4N41_12325 PF16199 Radical_SAM C-terminal domain J4N41_12325 PF04055 Radical SAM superfamily J4N41_12330 PF00310 Glutamine amidotransferases class-II J4N41_12330 PF01493 GXGXG motif J4N41_12330 PF01645 Conserved region in glutamate synthase J4N41_12330 PF04898 Glutamate synthase central domain J4N41_12335 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster J4N41_12335 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N41_12340 PF00310 Glutamine amidotransferases class-II J4N41_12340 PF04898 Glutamate synthase central domain J4N41_12340 PF01645 Conserved region in glutamate synthase J4N41_12340 PF01493 GXGXG motif J4N41_12345 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster J4N41_12345 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N41_12355 PF01509 TruB family pseudouridylate synthase (N terminal domain) J4N41_12355 PF09157 Pseudouridine synthase II TruB, C-terminal J4N41_12355 PF16198 tRNA pseudouridylate synthase B C-terminal domain J4N41_12360 PF02033 Ribosome-binding factor A J4N41_12365 PF11987 Translation-initiation factor 2 J4N41_12365 PF08364 Bacterial translation initiation factor IF-2 associated region J4N41_12365 PF04760 Translation initiation factor IF-2, N-terminal region J4N41_12365 PF00009 Elongation factor Tu GTP binding domain J4N41_12370 PF13184 NusA-like KH domain J4N41_12370 PF08529 NusA N-terminal domain J4N41_12370 PF00575 S1 RNA binding domain J4N41_12375 PF02576 RimP N-terminal domain J4N41_12375 PF17384 RimP C-terminal SH3 domain J4N41_12450 PF03840 Preprotein translocase SecG subunit J4N41_12455 PF13508 Acetyltransferase (GNAT) domain J4N41_12460 PF02036 SCP-2 sterol transfer family J4N41_12465 PF03707 Bacterial signalling protein N terminal repeat J4N41_12465 PF00990 Diguanylate cyclase, GGDEF domain J4N41_12465 PF00563 EAL domain J4N41_12470 PF01136 Peptidase family U32 J4N41_12475 PF01136 Peptidase family U32 J4N41_12480 PF01336 OB-fold nucleic acid binding domain J4N41_12480 PF00152 tRNA synthetases class II (D, K and N) J4N41_12490 PF05525 Branched-chain amino acid transport protein J4N41_12495 PF05175 Methyltransferase small domain J4N41_12500 PF00271 Helicase conserved C-terminal domain J4N41_12500 PF00270 DEAD/DEAH box helicase J4N41_12505 PF03144 Elongation factor Tu domain 2 J4N41_12505 PF16658 Class II release factor RF3, C-terminal domain J4N41_12505 PF00009 Elongation factor Tu GTP binding domain J4N41_12510 PF00990 Diguanylate cyclase, GGDEF domain J4N41_12510 PF00563 EAL domain J4N41_12510 PF03707 Bacterial signalling protein N terminal repeat J4N41_12515 PF00583 Acetyltransferase (GNAT) family J4N41_12525 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J4N41_12525 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J4N41_12525 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J4N41_12525 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J4N41_12530 PF00809 Pterin binding enzyme J4N41_12535 PF17862 AAA+ lid domain J4N41_12535 PF00004 ATPase family associated with various cellular activities (AAA) J4N41_12535 PF06480 FtsH Extracellular J4N41_12535 PF01434 Peptidase family M41 J4N41_12540 PF01728 FtsJ-like methyltransferase J4N41_12545 PF01985 CRS1 / YhbY (CRM) domain J4N41_12550 PF03449 Transcription elongation factor, N-terminal J4N41_12550 PF01272 Transcription elongation factor, GreA/GreB, C-term J4N41_12555 PF13609 Gram-negative porin J4N41_12560 PF00873 AcrB/AcrD/AcrF family J4N41_12570 PF01521 Iron-sulphur cluster biosynthesis J4N41_12575 PF00202 Aminotransferase class-III J4N41_12580 PF01594 AI-2E family transporter J4N41_12585 PF05175 Methyltransferase small domain J4N41_12585 PF08468 Methyltransferase small domain N-terminal J4N41_12590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_12590 PF00512 His Kinase A (phospho-acceptor) domain J4N41_12590 PF00072 Response regulator receiver domain J4N41_12590 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N41_12595 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N41_12600 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_12605 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_12605 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N41_12610 PF00005 ABC transporter J4N41_12610 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N41_12615 PF00005 ABC transporter J4N41_12615 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N41_12625 PF01869 BadF/BadG/BcrA/BcrD ATPase family J4N41_12630 PF02838 Glycosyl hydrolase family 20, domain 2 J4N41_12630 PF00728 Glycosyl hydrolase family 20, catalytic domain J4N41_12635 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain J4N41_12635 PF06165 Glycosyltransferase family 36 J4N41_12640 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J4N41_12640 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J4N41_12640 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J4N41_12640 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J4N41_12645 PF00005 ABC transporter J4N41_12645 PF08402 TOBE domain J4N41_12655 PF13416 Bacterial extracellular solute-binding protein J4N41_12660 PF00909 Ammonium Transporter Family J4N41_12665 PF00543 Nitrogen regulatory protein P-II J4N41_12670 PF06062 Uncharacterised protein family (UPF0231) J4N41_12675 PF00330 Aconitase family (aconitate hydratase) J4N41_12675 PF06434 Aconitate hydratase 2 N-terminus J4N41_12675 PF11791 Aconitate B N-terminal domain J4N41_12680 PF01734 Patatin-like phospholipase J4N41_12685 PF00912 Transglycosylase J4N41_12685 PF00905 Penicillin binding protein transpeptidase domain J4N41_12685 PF14814 Bifunctional transglycosylase second domain J4N41_12690 PF13737 Transposase DDE domain J4N41_12705 PF00171 Aldehyde dehydrogenase family J4N41_12715 PF01797 Transposase IS200 like J4N41_12735 PF13737 Transposase DDE domain J4N41_12750 PF13737 Transposase DDE domain J4N41_12760 PF13737 Transposase DDE domain J4N41_12765 PF00884 Sulfatase J4N41_12770 PF16925 Tetracyclin repressor-like, C-terminal domain J4N41_12770 PF00440 Bacterial regulatory proteins, tetR family J4N41_12805 PF00270 DEAD/DEAH box helicase J4N41_12805 PF04408 Helicase associated domain (HA2) J4N41_12805 PF00271 Helicase conserved C-terminal domain J4N41_12805 PF08482 ATP-dependent helicase C-terminal J4N41_12810 PF17746 SfsA N-terminal OB domain J4N41_12810 PF03749 Sugar fermentation stimulation protein RE domain J4N41_12815 PF01258 Prokaryotic dksA/traR C4-type zinc finger J4N41_12820 PF00749 tRNA synthetases class I (E and Q), catalytic domain J4N41_12825 PF12627 Probable RNA and SrmB- binding site of polymerase A J4N41_12825 PF01743 Poly A polymerase head domain J4N41_12825 PF12626 Polymerase A arginine-rich C-terminus J4N41_12830 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J4N41_12835 PF02548 Ketopantoate hydroxymethyltransferase J4N41_12840 PF02569 Pantoate-beta-alanine ligase J4N41_12845 PF01061 ABC-2 type transporter J4N41_12850 PF00005 ABC transporter J4N41_12855 PF01740 STAS domain J4N41_12855 PF00916 Sulfate permease family J4N41_12860 PF00484 Carbonic anhydrase J4N41_12865 PF00156 Phosphoribosyl transferase domain J4N41_12870 PF00440 Bacterial regulatory proteins, tetR family J4N41_12875 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N41_12875 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4N41_12880 PF02817 e3 binding domain J4N41_12880 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J4N41_12880 PF00364 Biotin-requiring enzyme J4N41_12885 PF00456 Transketolase, thiamine diphosphate binding domain J4N41_12885 PF17831 Pyruvate dehydrogenase E1 component middle domain J4N41_12890 PF07729 FCD domain J4N41_12890 PF00392 Bacterial regulatory proteins, gntR family J4N41_12895 PF02272 DHHA1 domain J4N41_12895 PF17768 RecJ OB domain J4N41_12895 PF01368 DHH family J4N41_12900 PF13098 Thioredoxin-like domain J4N41_12900 PF10411 Disulfide bond isomerase protein N-terminus J4N41_12905 PF02899 Phage integrase, N-terminal SAM-like domain J4N41_12905 PF00589 Phage integrase family J4N41_12910 PF00258 Flavodoxin J4N41_12915 PF01510 N-acetylmuramoyl-L-alanine amidase J4N41_12920 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain J4N41_12920 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain J4N41_12925 PF00114 Pilin (bacterial filament) J4N41_12925 PF07963 Prokaryotic N-terminal methylation motif J4N41_12930 PF00437 Type II/IV secretion system protein J4N41_12930 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J4N41_12935 PF00482 Type II secretion system (T2SS), protein F J4N41_12940 PF06750 Bacterial Peptidase A24 N-terminal domain J4N41_12940 PF01478 Type IV leader peptidase family J4N41_12945 PF01121 Dephospho-CoA kinase J4N41_12950 PF07072 Cell division protein J4N41_12955 PF03884 DNA gyrase inhibitor YacG J4N41_12960 PF01245 Ribosomal protein L19 J4N41_12965 PF01746 tRNA (Guanine-1)-methyltransferase J4N41_12970 PF01782 RimM N-terminal domain J4N41_12970 PF05239 PRC-barrel domain J4N41_12975 PF00886 Ribosomal protein S16 J4N41_12980 PF02978 Signal peptide binding domain J4N41_12980 PF00448 SRP54-type protein, GTPase domain J4N41_12980 PF02881 SRP54-type protein, helical bundle domain J4N41_12985 PF01578 Cytochrome C assembly protein J4N41_12990 PF01595 Cyclin M transmembrane N-terminal domain J4N41_12990 PF03471 Transporter associated domain J4N41_12990 PF00571 CBS domain J4N41_12995 PF00140 Sigma-70 factor, region 1.2 J4N41_12995 PF04542 Sigma-70 region 2 J4N41_12995 PF04539 Sigma-70 region 3 J4N41_12995 PF04545 Sigma-70, region 4 J4N41_13000 PF01476 LysM domain J4N41_13000 PF01551 Peptidase family M23 J4N41_13010 PF01975 Survival protein SurE J4N41_13015 PF01142 tRNA pseudouridine synthase D (TruD) J4N41_13020 PF02542 YgbB family J4N41_13025 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase J4N41_13030 PF04977 Septum formation initiator J4N41_13035 PF02673 Bacitracin resistance protein BacA J4N41_13040 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J4N41_13045 PF02152 Dihydroneopterin aldolase J4N41_13050 PF02660 Glycerol-3-phosphate acyltransferase J4N41_13055 PF00561 alpha/beta hydrolase fold J4N41_13060 PF01609 Transposase DDE domain J4N41_13060 PF13006 Insertion element 4 transposase N-terminal J4N41_13065 PF00814 Glycoprotease family J4N41_13070 PF01165 Ribosomal protein S21 J4N41_13075 PF09424 Yqey-like protein J4N41_13080 PF10410 DnaB-helicase binding domain of primase J4N41_13080 PF08278 DNA primase DnaG DnaB-binding J4N41_13080 PF08275 DNA primase catalytic core, N-terminal domain J4N41_13080 PF01807 CHC2 zinc finger J4N41_13085 PF04546 Sigma-70, non-essential region J4N41_13085 PF03979 Sigma-70 factor, region 1.1 J4N41_13085 PF00140 Sigma-70 factor, region 1.2 J4N41_13085 PF04542 Sigma-70 region 2 J4N41_13085 PF04539 Sigma-70 region 3 J4N41_13085 PF04545 Sigma-70, region 4 J4N41_13095 PF05099 Tellurite resistance protein TerB J4N41_13095 PF00226 DnaJ domain J4N41_13100 PF04453 LPS transport system D J4N41_13100 PF03968 OstA-like protein J4N41_13105 PF09312 SurA N-terminal domain J4N41_13110 PF04166 Pyridoxal phosphate biosynthetic protein PdxA J4N41_13115 PF00398 Ribosomal RNA adenine dimethylase J4N41_13120 PF04379 ApaG domain J4N41_13125 PF00149 Calcineurin-like phosphoesterase J4N41_13130 PF00186 Dihydrofolate reductase J4N41_13135 PF12821 Threonine/Serine exporter, ThrE J4N41_13140 PF06738 Putative threonine/serine exporter J4N41_13145 PF01018 GTP1/OBG J4N41_13145 PF01926 50S ribosome-binding GTPase J4N41_13150 PF01016 Ribosomal L27 protein J4N41_13155 PF00829 Ribosomal prokaryotic L21 protein J4N41_13160 PF00348 Polyprenyl synthetase J4N41_13210 PF00072 Response regulator receiver domain J4N41_13225 PF00145 C-5 cytosine-specific DNA methylase J4N41_13260 PF00589 Phage integrase family J4N41_13260 PF02899 Phage integrase, N-terminal SAM-like domain J4N41_13325 PF02664 S-Ribosylhomocysteinase (LuxS) J4N41_13335 PF04262 Glutamate-cysteine ligase J4N41_13340 PF00675 Insulinase (Peptidase family M16) J4N41_13340 PF05193 Peptidase M16 inactive domain J4N41_13345 PF09335 SNARE associated Golgi protein J4N41_13350 PF08240 Alcohol dehydrogenase GroES-like domain J4N41_13350 PF00107 Zinc-binding dehydrogenase J4N41_13355 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit J4N41_13360 PF00682 HMGL-like J4N41_13360 PF02436 Conserved carboxylase domain J4N41_13360 PF00364 Biotin-requiring enzyme J4N41_13365 PF04277 Oxaloacetate decarboxylase, gamma chain J4N41_13410 PF02599 Global regulator protein family J4N41_13415 PF00696 Amino acid kinase family J4N41_13415 PF01842 ACT domain J4N41_13415 PF13840 ACT domain J4N41_13420 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J4N41_13420 PF02272 DHHA1 domain J4N41_13420 PF01411 tRNA synthetases class II (A) J4N41_13425 PF02631 RecX family J4N41_13430 PF00154 recA bacterial DNA recombination protein J4N41_13435 PF02464 Competence-damaged protein J4N41_13440 PF01624 MutS domain I J4N41_13440 PF05188 MutS domain II J4N41_13440 PF05192 MutS domain III J4N41_13440 PF05190 MutS family domain IV J4N41_13440 PF00488 MutS domain V J4N41_13445 PF03739 Lipopolysaccharide export system permease LptF/LptG J4N41_13450 PF03739 Lipopolysaccharide export system permease LptF/LptG J4N41_13455 PF02789 Cytosol aminopeptidase family, N-terminal domain J4N41_13455 PF00883 Cytosol aminopeptidase family, catalytic domain J4N41_13460 PF04364 DNA polymerase III chi subunit, HolC J4N41_13465 PF00133 tRNA synthetases class I (I, L, M and V) J4N41_13465 PF10458 Valyl tRNA synthetase tRNA binding arm J4N41_13465 PF08264 Anticodon-binding domain of tRNA J4N41_13475 PF05987 Bacterial protein of unknown function (DUF898) J4N41_13485 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J4N41_13485 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N41_13490 PF00849 RNA pseudouridylate synthase J4N41_13500 PF12137 RNA polymerase recycling family C-terminal J4N41_13500 PF00176 SNF2 family N-terminal domain J4N41_13500 PF18339 RapA N-terminal Tudor like domain 1 J4N41_13500 PF18337 RapA N-terminal Tudor like domain J4N41_13500 PF00271 Helicase conserved C-terminal domain J4N41_13505 PF02562 PhoH-like protein J4N41_13505 PF13638 PIN domain J4N41_13510 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J4N41_13510 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J4N41_13515 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J4N41_13515 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J4N41_13520 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain J4N41_13520 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain J4N41_13525 PF01042 Endoribonuclease L-PSP J4N41_13535 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain J4N41_13535 PF00056 lactate/malate dehydrogenase, NAD binding domain J4N41_13540 PF01316 Arginine repressor, DNA binding domain J4N41_13540 PF02863 Arginine repressor, C-terminal domain J4N41_13545 PF16868 NMT1-like family J4N41_13555 PF00582 Universal stress protein family J4N41_13570 PF06877 Regulator of ribonuclease activity B J4N41_13580 PF00266 Aminotransferase class-V J4N41_13585 PF00696 Amino acid kinase family J4N41_13585 PF01842 ACT domain J4N41_13590 PF01523 Putative modulator of DNA gyrase J4N41_13595 PF04751 Protein of unknown function (DUF615) J4N41_13600 PF01553 Acyltransferase J4N41_13605 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J4N41_13610 PF01722 BolA-like protein J4N41_13620 PF05494 MlaC protein J4N41_13625 PF02470 MlaD protein J4N41_13630 PF02405 Permease MlaE J4N41_13635 PF00005 ABC transporter J4N41_13640 PF01699 Sodium/calcium exchanger protein J4N41_13645 PF00571 CBS domain J4N41_13645 PF01380 SIS domain J4N41_13660 PF03968 OstA-like protein J4N41_13665 PF00005 ABC transporter J4N41_13665 PF12399 Branched-chain amino acid ATP-binding cassette transporter J4N41_13670 PF04963 Sigma-54 factor, core binding domain J4N41_13670 PF04552 Sigma-54, DNA binding domain J4N41_13670 PF00309 Sigma-54 factor, Activator interacting domain (AID) J4N41_13675 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein J4N41_13680 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N41_13685 PF03668 P-loop ATPase protein family J4N41_13690 PF00381 PTS HPr component phosphorylation site J4N41_13695 PF03448 MgtE intracellular N domain J4N41_13695 PF00571 CBS domain J4N41_13695 PF01769 Divalent cation transporter J4N41_13700 PF02607 B12 binding domain J4N41_13700 PF02965 Vitamin B12 dependent methionine synthase, activation domain J4N41_13700 PF00809 Pterin binding enzyme J4N41_13700 PF02574 Homocysteine S-methyltransferase J4N41_13700 PF02310 B12 binding domain J4N41_13705 PF00999 Sodium/hydrogen exchanger family J4N41_13770 PF01507 Phosphoadenosine phosphosulfate reductase family J4N41_13775 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J4N41_13775 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain J4N41_13780 PF00667 FAD binding domain J4N41_13780 PF00258 Flavodoxin J4N41_13780 PF00175 Oxidoreductase NAD-binding domain J4N41_13800 PF01207 Dihydrouridine synthase (Dus) J4N41_13805 PF00072 Response regulator receiver domain J4N41_13810 PF00072 Response regulator receiver domain J4N41_13810 PF01627 Hpt domain J4N41_13810 PF00512 His Kinase A (phospho-acceptor) domain J4N41_13810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_13810 PF00672 HAMP domain J4N41_13810 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J4N41_13815 PF01475 Ferric uptake regulator family J4N41_13830 PF03600 Citrate transporter J4N41_13830 PF02080 TrkA-C domain J4N41_13835 PF00009 Elongation factor Tu GTP binding domain J4N41_13840 PF01507 Phosphoadenosine phosphosulfate reductase family J4N41_13845 PF10414 Sirohaem synthase dimerisation region J4N41_13845 PF14824 Sirohaem biosynthesis protein central J4N41_13845 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N41_13850 PF02872 5'-nucleotidase, C-terminal domain J4N41_13850 PF00149 Calcineurin-like phosphoesterase J4N41_13860 PF13673 Acetyltransferase (GNAT) domain J4N41_13875 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N41_13875 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J4N41_13885 PF01196 Ribosomal protein L17 J4N41_13890 PF01000 RNA polymerase Rpb3/RpoA insert domain J4N41_13890 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain J4N41_13890 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain J4N41_13895 PF01479 S4 domain J4N41_13895 PF00163 Ribosomal protein S4/S9 N-terminal domain J4N41_13900 PF00411 Ribosomal protein S11 J4N41_13905 PF00416 Ribosomal protein S13/S18 J4N41_13910 PF00444 Ribosomal protein L36 J4N41_13915 PF00344 SecY translocase J4N41_13920 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A J4N41_13925 PF00327 Ribosomal protein L30p/L7e J4N41_13930 PF00333 Ribosomal protein S5, N-terminal domain J4N41_13930 PF03719 Ribosomal protein S5, C-terminal domain J4N41_13935 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast J4N41_13940 PF00347 Ribosomal protein L6 J4N41_13945 PF00410 Ribosomal protein S8 J4N41_13950 PF00253 Ribosomal protein S14p/S29e J4N41_13955 PF00281 Ribosomal protein L5 J4N41_13955 PF00673 ribosomal L5P family C-terminus J4N41_13960 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 J4N41_13960 PF00467 KOW motif J4N41_13965 PF00238 Ribosomal protein L14p/L23e J4N41_13970 PF00366 Ribosomal protein S17 J4N41_13975 PF00831 Ribosomal L29 protein J4N41_13980 PF00252 Ribosomal protein L16p/L10e J4N41_13985 PF07650 KH domain J4N41_13985 PF00189 Ribosomal protein S3, C-terminal domain J4N41_13990 PF00237 Ribosomal protein L22p/L17e J4N41_13995 PF00203 Ribosomal protein S19 J4N41_14000 PF00181 Ribosomal Proteins L2, RNA binding domain J4N41_14000 PF03947 Ribosomal Proteins L2, C-terminal domain J4N41_14005 PF00276 Ribosomal protein L23 J4N41_14010 PF00573 Ribosomal protein L4/L1 family J4N41_14015 PF00297 Ribosomal protein L3 J4N41_14020 PF00338 Ribosomal protein S10p/S20e J4N41_14025 PF08032 RNA 2'-O ribose methyltransferase substrate binding J4N41_14025 PF00588 SpoU rRNA Methylase family J4N41_14030 PF00575 S1 RNA binding domain J4N41_14030 PF00773 RNB domain J4N41_14030 PF08206 Ribonuclease B OB domain J4N41_14030 PF08461 Ribonuclease R winged-helix domain J4N41_14030 PF17876 Cold shock domain J4N41_14035 PF01979 Amidohydrolase family J4N41_14040 PF08238 Sel1 repeat J4N41_14045 PF00709 Adenylosuccinate synthetase J4N41_14050 PF01112 Asparaginase J4N41_14055 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N41_14065 PF00999 Sodium/hydrogen exchanger family J4N41_14065 PF02254 TrkA-N domain J4N41_14070 PF02525 Flavodoxin-like fold J4N41_14075 PF00005 ABC transporter J4N41_14075 PF12848 ABC transporter J4N41_14085 PF00561 alpha/beta hydrolase fold J4N41_14090 PF06794 Uncharacterised protein family (UPF0270) J4N41_14095 PF00485 Phosphoribulokinase / Uridine kinase family J4N41_14100 PF00027 Cyclic nucleotide-binding domain J4N41_14100 PF13545 Crp-like helix-turn-helix domain J4N41_14105 PF02080 TrkA-C domain J4N41_14105 PF03600 Citrate transporter J4N41_14110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N41_14110 PF00672 HAMP domain J4N41_14120 PF06415 BPG-independent PGAM N-terminus (iPGM_N) J4N41_14120 PF01676 Metalloenzyme superfamily J4N41_14125 PF01551 Peptidase family M23 J4N41_14135 PF08360 QacR-like protein, C-terminal region J4N41_14135 PF00440 Bacterial regulatory proteins, tetR family J4N41_14140 PF01208 Uroporphyrinogen decarboxylase (URO-D) J4N41_14145 PF09297 NADH pyrophosphatase zinc ribbon domain J4N41_14145 PF00293 NUDIX domain J4N41_14150 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ J4N41_14155 PF03606 C4-dicarboxylate anaerobic carrier J4N41_14165 PF00696 Amino acid kinase family J4N41_14170 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J4N41_14170 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J4N41_14175 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J4N41_14175 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J4N41_14180 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain J4N41_14180 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain J4N41_14185 PF02863 Arginine repressor, C-terminal domain J4N41_14185 PF01316 Arginine repressor, DNA binding domain J4N41_14190 PF11412 Disulphide bond corrector protein DsbC J4N41_14190 PF02683 Cytochrome C biogenesis protein transmembrane region J4N41_14195 PF00196 Bacterial regulatory proteins, luxR family J4N41_14195 PF00072 Response regulator receiver domain J4N41_14200 PF01914 MarC family integral membrane protein J4N41_14210 PF00474 Sodium:solute symporter family J4N41_14230 PF00121 Triosephosphate isomerase J4N41_14235 PF01554 MatE J4N41_14240 PF03737 Aldolase/RraA J4N41_14245 PF01040 UbiA prenyltransferase family J4N41_14250 PF09285 Elongation factor P, C-terminal J4N41_14250 PF08207 Elongation factor P (EF-P) KOW-like domain J4N41_14250 PF01132 Elongation factor P (EF-P) OB domain J4N41_14255 PF04055 Radical SAM superfamily J4N41_14265 PF02308 MgtC family J4N41_14270 PF00365 Phosphofructokinase J4N41_14275 PF01545 Cation efflux family J4N41_14275 PF16916 Dimerisation domain of Zinc Transporter J4N41_14285 PF00486 Transcriptional regulatory protein, C terminal J4N41_14285 PF00072 Response regulator receiver domain J4N41_14290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_14290 PF16527 Two-component sensor protein CpxA, periplasmic domain J4N41_14290 PF00672 HAMP domain J4N41_14290 PF00512 His Kinase A (phospho-acceptor) domain J4N41_14295 PF02777 Iron/manganese superoxide dismutases, C-terminal domain J4N41_14295 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain J4N41_14300 PF00588 SpoU rRNA Methylase family J4N41_14305 PF00579 tRNA synthetases class I (W and Y) J4N41_14310 PF13419 Haloacid dehalogenase-like hydrolase J4N41_14315 PF00834 Ribulose-phosphate 3 epimerase family J4N41_14320 PF02086 D12 class N6 adenine-specific DNA methyltransferase J4N41_14330 PF01761 3-dehydroquinate synthase J4N41_14335 PF01202 Shikimate kinase J4N41_14340 PF03958 Bacterial type II/III secretion system short domain J4N41_14340 PF00263 Bacterial type II and III secretion system protein J4N41_14340 PF11741 AMIN domain J4N41_14340 PF07660 Secretin and TonB N terminus short domain J4N41_14355 PF05137 Fimbrial assembly protein (PilN) J4N41_14365 PF17092 Penicillin-binding protein OB-like domain J4N41_14365 PF00905 Penicillin binding protein transpeptidase domain J4N41_14365 PF00912 Transglycosylase J4N41_14370 PF03466 LysR substrate binding domain J4N41_14370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_14375 PF08534 Redoxin J4N41_14375 PF00462 Glutaredoxin J4N41_14380 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4N41_14380 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N41_14385 PF01042 Endoribonuclease L-PSP J4N41_14395 PF00583 Acetyltransferase (GNAT) family J4N41_14395 PF14698 Argininosuccinate lyase C-terminal J4N41_14395 PF00206 Lyase J4N41_14400 PF00764 Arginosuccinate synthase J4N41_14405 PF00696 Amino acid kinase family J4N41_14410 PF02774 Semialdehyde dehydrogenase, dimerisation domain J4N41_14410 PF01118 Semialdehyde dehydrogenase, NAD binding domain J4N41_14415 PF07687 Peptidase dimerisation domain J4N41_14415 PF01546 Peptidase family M20/M25/M40 J4N41_14480 PF01177 Asp/Glu/Hydantoin racemase J4N41_14490 PF00593 TonB dependent receptor J4N41_14490 PF07715 TonB-dependent Receptor Plug Domain J4N41_14495 PF05958 tRNA (Uracil-5-)-methyltransferase J4N41_14505 PF00440 Bacterial regulatory proteins, tetR family J4N41_14510 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4N41_14510 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N41_14515 PF01554 MatE J4N41_14525 PF00717 Peptidase S24-like J4N41_14525 PF01726 LexA DNA binding domain J4N41_14530 PF01219 Prokaryotic diacylglycerol kinase J4N41_14535 PF01553 Acyltransferase J4N41_14540 PF01040 UbiA prenyltransferase family J4N41_14545 PF04345 Chorismate lyase J4N41_14550 PF03748 Flagellar basal body-associated protein FliL J4N41_14555 PF01694 Rhomboid family J4N41_14555 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease J4N41_14560 PF00581 Rhodanese-like domain J4N41_14565 PF04542 Sigma-70 region 2 J4N41_14565 PF04545 Sigma-70, region 4 J4N41_14565 PF00140 Sigma-70 factor, region 1.2 J4N41_14570 PF18075 FtsX extracellular domain J4N41_14575 PF00005 ABC transporter J4N41_14580 PF02881 SRP54-type protein, helical bundle domain J4N41_14580 PF00448 SRP54-type protein, GTPase domain J4N41_14595 PF01914 MarC family integral membrane protein J4N41_14640 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J4N41_14640 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J4N41_14645 PF01022 Bacterial regulatory protein, arsR family J4N41_14650 PF00563 EAL domain J4N41_14650 PF08668 HDOD domain J4N41_14655 PF01810 LysE type translocator J4N41_14660 PF12146 Serine aminopeptidase, S33 J4N41_14680 PF03942 DTW domain J4N41_14685 PF13419 Haloacid dehalogenase-like hydrolase J4N41_14690 PF02899 Phage integrase, N-terminal SAM-like domain J4N41_14690 PF00589 Phage integrase family J4N41_14700 PF01678 Diaminopimelate epimerase J4N41_14705 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain J4N41_14705 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J4N41_14715 PF01491 Frataxin-like domain J4N41_14720 PF01295 Adenylate cyclase, class-I J4N41_14720 PF12633 Adenylate cyclase NT domain J4N41_14725 PF03900 Porphobilinogen deaminase, C-terminal domain J4N41_14725 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain J4N41_14730 PF02602 Uroporphyrinogen-III synthase HemD J4N41_14735 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase J4N41_14740 PF07219 HemY protein N-terminus J4N41_14765 PF00175 Oxidoreductase NAD-binding domain J4N41_14770 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N41_14770 PF00970 Oxidoreductase FAD-binding domain J4N41_14770 PF00175 Oxidoreductase NAD-binding domain J4N41_14775 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase J4N41_14785 PF07497 Rho termination factor, RNA-binding domain J4N41_14785 PF07498 Rho termination factor, N-terminal domain J4N41_14785 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N41_14790 PF00085 Thioredoxin J4N41_14795 PF00270 DEAD/DEAH box helicase J4N41_14795 PF00271 Helicase conserved C-terminal domain J4N41_14800 PF02541 Ppx/GppA phosphatase family J4N41_14805 PF02592 Putative vitamin uptake transporter J4N41_14815 PF00270 DEAD/DEAH box helicase J4N41_14815 PF00570 HRDC domain J4N41_14815 PF16124 RecQ zinc-binding J4N41_14815 PF09382 RQC domain J4N41_14815 PF00271 Helicase conserved C-terminal domain J4N41_14820 PF00892 EamA-like transporter family J4N41_14830 PF01810 LysE type translocator J4N41_14840 PF00580 UvrD/REP helicase N-terminal domain J4N41_14840 PF13361 UvrD-like helicase C-terminal domain J4N41_14850 PF05114 Protein of unknown function (DUF692) J4N41_14865 PF01432 Peptidase family M3 J4N41_14870 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ J4N41_14875 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4N41_14875 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N41_14890 PF01494 FAD binding domain J4N41_14895 PF03466 LysR substrate binding domain J4N41_14895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_14900 PF03306 Alpha-acetolactate decarboxylase J4N41_14905 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J4N41_14905 PF00205 Thiamine pyrophosphate enzyme, central domain J4N41_14905 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J4N41_14920 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N41_14930 PF12833 Helix-turn-helix domain J4N41_14935 PF07971 Glycosyl hydrolase family 92 J4N41_14935 PF17678 Glycosyl hydrolase family 92 N-terminal domain J4N41_14945 PF17678 Glycosyl hydrolase family 92 N-terminal domain J4N41_14945 PF07971 Glycosyl hydrolase family 92 J4N41_14955 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N41_14955 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N41_14975 PF00083 Sugar (and other) transporter J4N41_14995 PF00196 Bacterial regulatory proteins, luxR family J4N41_14995 PF00072 Response regulator receiver domain J4N41_15010 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N41_15010 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_15015 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_15020 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N41_15025 PF00005 ABC transporter J4N41_15025 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N41_15055 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J4N41_15060 PF13361 UvrD-like helicase C-terminal domain J4N41_15060 PF00580 UvrD/REP helicase N-terminal domain J4N41_15065 PF00440 Bacterial regulatory proteins, tetR family J4N41_15070 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N41_15075 PF00873 AcrB/AcrD/AcrF family J4N41_15080 PF04380 Membrane fusogenic activity J4N41_15085 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain J4N41_15085 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain J4N41_15090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_15090 PF03466 LysR substrate binding domain J4N41_15095 PF06969 HemN C-terminal domain J4N41_15095 PF04055 Radical SAM superfamily J4N41_15105 PF04220 Der GTPase activator (YihI) J4N41_15115 PF00034 Cytochrome c J4N41_15120 PF01926 50S ribosome-binding GTPase J4N41_15125 PF01367 5'-3' exonuclease, C-terminal SAM fold J4N41_15125 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J4N41_15125 PF00476 DNA polymerase family A J4N41_15125 PF01612 3'-5' exonuclease J4N41_15135 PF00490 Delta-aminolevulinic acid dehydratase J4N41_15140 PF01026 TatD related DNase J4N41_15145 PF00902 Sec-independent protein translocase protein (TatC) J4N41_15150 PF02416 mttA/Hcf106 family J4N41_15155 PF02416 mttA/Hcf106 family J4N41_15160 PF03109 ABC1 family J4N41_15165 PF02036 SCP-2 sterol transfer family J4N41_15170 PF01209 ubiE/COQ5 methyltransferase family J4N41_15175 PF02646 RmuC family J4N41_15185 PF08668 HDOD domain J4N41_15200 PF01117 Aerolysin toxin J4N41_15200 PF03440 Aerolysin/Pertussis toxin (APT) domain J4N41_15210 PF10625 Universal stress protein B (UspB) J4N41_15215 PF00210 Ferritin-like domain J4N41_15220 PF00582 Universal stress protein family J4N41_15225 PF00892 EamA-like transporter family J4N41_15235 PF04445 Putative SAM-dependent methyltransferase J4N41_15240 PF00563 EAL domain J4N41_15240 PF00990 Diguanylate cyclase, GGDEF domain J4N41_15240 PF08448 PAS fold J4N41_15245 PF01037 Lrp/AsnC ligand binding domain J4N41_15255 PF07690 Major Facilitator Superfamily J4N41_15260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_15260 PF03466 LysR substrate binding domain J4N41_15265 PF00557 Metallopeptidase family M24 J4N41_15265 PF01321 Creatinase/Prolidase N-terminal domain J4N41_15265 PF00557 Metallopeptidase family M24 J4N41_15265 PF01321 Creatinase/Prolidase N-terminal domain J4N41_15270 PF04055 Radical SAM superfamily J4N41_15270 PF06968 Biotin and Thiamin Synthesis associated domain J4N41_15275 PF05690 Thiazole biosynthesis protein ThiG J4N41_15285 PF00899 ThiF family J4N41_15290 PF02581 Thiamine monophosphate synthase J4N41_15295 PF13667 ThiC-associated domain J4N41_15295 PF01964 Radical SAM ThiC family J4N41_15300 PF02537 CrcB-like protein, Camphor Resistance (CrcB) J4N41_15305 PF07732 Multicopper oxidase J4N41_15305 PF07731 Multicopper oxidase J4N41_15305 PF00394 Multicopper oxidase J4N41_15345 PF12724 Flavodoxin domain J4N41_15350 PF02386 Cation transport protein J4N41_15355 PF09186 Domain of unknown function (DUF1949) J4N41_15355 PF01205 Uncharacterized protein family UPF0029 J4N41_15360 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J4N41_15360 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J4N41_15360 PF00378 Enoyl-CoA hydratase/isomerase J4N41_15365 PF00108 Thiolase, N-terminal domain J4N41_15365 PF02803 Thiolase, C-terminal domain J4N41_15370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_15370 PF03466 LysR substrate binding domain J4N41_15375 PF07690 Major Facilitator Superfamily J4N41_15380 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N41_15385 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_15390 PF00132 Bacterial transferase hexapeptide (six repeats) J4N41_15390 PF12804 MobA-like NTP transferase domain J4N41_15395 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain J4N41_15395 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain J4N41_15400 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N41_15400 PF02874 ATP synthase alpha/beta family, beta-barrel domain J4N41_15405 PF00231 ATP synthase J4N41_15410 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N41_15410 PF02874 ATP synthase alpha/beta family, beta-barrel domain J4N41_15410 PF00306 ATP synthase alpha/beta chain, C terminal domain J4N41_15415 PF00213 ATP synthase delta (OSCP) subunit J4N41_15420 PF00430 ATP synthase B/B' CF(0) J4N41_15425 PF00137 ATP synthase subunit C J4N41_15430 PF00119 ATP synthase A chain J4N41_15435 PF03899 ATP synthase I chain J4N41_15440 PF17762 HTH domain found in ParB protein J4N41_15440 PF02195 ParB-like nuclease domain J4N41_15445 PF13614 AAA domain J4N41_15450 PF02527 rRNA small subunit methyltransferase G J4N41_15455 PF01134 Glucose inhibited division protein A J4N41_15455 PF13932 GidA associated domain J4N41_15460 PF00258 Flavodoxin J4N41_15465 PF01926 50S ribosome-binding GTPase J4N41_15465 PF10396 GTP-binding protein TrmE N-terminus J4N41_15465 PF12631 MnmE helical domain J4N41_15470 PF02096 60Kd inner membrane protein J4N41_15470 PF14849 YidC periplasmic domain J4N41_15475 PF01809 Putative membrane protein insertion efficiency factor J4N41_15480 PF00825 Ribonuclease P J4N41_15485 PF00468 Ribosomal protein L34 J4N41_15490 PF00005 ABC transporter J4N41_15495 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_15500 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N41_15505 PF18607 ParA helix turn helix domain J4N41_15505 PF13614 AAA domain J4N41_15510 PF02195 ParB-like nuclease domain J4N41_15510 PF08775 ParB family J4N41_15515 PF13718 GNAT acetyltransferase 2 J4N41_15515 PF05127 Helicase J4N41_15525 PF00072 Response regulator receiver domain J4N41_15530 PF02895 Signal transducing histidine kinase, homodimeric domain J4N41_15530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_15530 PF01627 Hpt domain J4N41_15530 PF09078 CheY binding J4N41_15530 PF01584 CheW-like domain J4N41_15535 PF01584 CheW-like domain J4N41_15540 PF01584 CheW-like domain J4N41_15545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N41_15545 PF02203 Tar ligand binding domain homologue J4N41_15545 PF00672 HAMP domain J4N41_15550 PF01739 CheR methyltransferase, SAM binding domain J4N41_15550 PF03705 CheR methyltransferase, all-alpha domain J4N41_15555 PF03975 CheD chemotactic sensory transduction J4N41_15560 PF01339 CheB methylesterase J4N41_15560 PF00072 Response regulator receiver domain J4N41_15565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N41_15565 PF02743 Cache domain J4N41_15565 PF00672 HAMP domain J4N41_15575 PF00072 Response regulator receiver domain J4N41_15575 PF00990 Diguanylate cyclase, GGDEF domain J4N41_15585 PF07690 Major Facilitator Superfamily J4N41_15595 PF00893 Small Multidrug Resistance protein J4N41_15600 PF03466 LysR substrate binding domain J4N41_15600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_15605 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_15610 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_15625 PF13419 Haloacid dehalogenase-like hydrolase J4N41_15630 PF00005 ABC transporter J4N41_15630 PF17912 MalK OB fold domain J4N41_15630 PF03459 TOBE domain J4N41_15635 PF00582 Universal stress protein family J4N41_15640 PF00232 Glycosyl hydrolase family 1 J4N41_15670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_15670 PF03466 LysR substrate binding domain J4N41_15685 PF08543 Phosphomethylpyrimidine kinase J4N41_15690 PF03070 TENA/THI-4/PQQC family J4N41_15705 PF12833 Helix-turn-helix domain J4N41_15705 PF01965 DJ-1/PfpI family J4N41_15710 PF03466 LysR substrate binding domain J4N41_15710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_15720 PF01569 PAP2 superfamily J4N41_15740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_15740 PF03466 LysR substrate binding domain J4N41_15750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_15750 PF03466 LysR substrate binding domain J4N41_15755 PF08659 KR domain J4N41_15755 PF00550 Phosphopantetheine attachment site J4N41_15755 PF02801 Beta-ketoacyl synthase, C-terminal domain J4N41_15755 PF14765 Polyketide synthase dehydratase J4N41_15755 PF16197 Ketoacyl-synthetase C-terminal extension J4N41_15755 PF09277 Erythronolide synthase, docking J4N41_15755 PF08990 Erythronolide synthase docking J4N41_15755 PF08240 Alcohol dehydrogenase GroES-like domain J4N41_15755 PF00698 Acyl transferase domain J4N41_15755 PF00109 Beta-ketoacyl synthase, N-terminal domain J4N41_15760 PF01042 Endoribonuclease L-PSP J4N41_15765 PF00892 EamA-like transporter family J4N41_15810 PF07690 Major Facilitator Superfamily J4N41_15815 PF05221 S-adenosyl-L-homocysteine hydrolase J4N41_15815 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain J4N41_15840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_15840 PF03466 LysR substrate binding domain J4N41_15855 PF06029 AlkA N-terminal domain J4N41_15855 PF00730 HhH-GPD superfamily base excision DNA repair protein J4N41_15860 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain J4N41_15860 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J4N41_15870 PF03600 Citrate transporter J4N41_15880 PF12833 Helix-turn-helix domain J4N41_15885 PF07715 TonB-dependent Receptor Plug Domain J4N41_15885 PF00593 TonB dependent receptor J4N41_15895 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J4N41_15895 PF00072 Response regulator receiver domain J4N41_15895 PF01627 Hpt domain J4N41_15895 PF00512 His Kinase A (phospho-acceptor) domain J4N41_15895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_15895 PF00672 HAMP domain J4N41_15900 PF01979 Amidohydrolase family J4N41_15910 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain J4N41_15910 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase J4N41_15915 PF03450 CO dehydrogenase flavoprotein C-terminal domain J4N41_15915 PF00941 FAD binding domain in molybdopterin dehydrogenase J4N41_15920 PF00392 Bacterial regulatory proteins, gntR family J4N41_15920 PF07729 FCD domain J4N41_15930 PF01979 Amidohydrolase family J4N41_15935 PF00082 Subtilase family J4N41_15935 PF05922 Peptidase inhibitor I9 J4N41_15935 PF04151 Bacterial pre-peptidase C-terminal domain J4N41_15940 PF00672 HAMP domain J4N41_15940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N41_15940 PF17200 Single Cache domain 2 J4N41_15955 PF10928 Protein of unknown function (DUF2810) J4N41_15965 PF00583 Acetyltransferase (GNAT) family J4N41_15970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_15970 PF03466 LysR substrate binding domain J4N41_15975 PF01609 Transposase DDE domain J4N41_15975 PF13006 Insertion element 4 transposase N-terminal J4N41_15980 PF00196 Bacterial regulatory proteins, luxR family J4N41_15980 PF17874 MalT-like TPR region J4N41_15985 PF00343 Carbohydrate phosphorylase J4N41_15990 PF02446 4-alpha-glucanotransferase J4N41_15995 PF02806 Alpha amylase, C-terminal all-beta domain J4N41_15995 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J4N41_15995 PF00128 Alpha amylase, catalytic domain J4N41_16015 PF00933 Glycosyl hydrolase family 3 N terminal domain J4N41_16015 PF01915 Glycosyl hydrolase family 3 C-terminal domain J4N41_16020 PF07075 Protein of unknown function (DUF1343) J4N41_16035 PF13340 Putative transposase of IS4/5 family (DUF4096) J4N41_16040 PF03009 Glycerophosphoryl diester phosphodiesterase family J4N41_16105 PF12848 ABC transporter J4N41_16105 PF00005 ABC transporter J4N41_16110 PF01717 Cobalamin-independent synthase, Catalytic domain J4N41_16110 PF08267 Cobalamin-independent synthase, N-terminal domain J4N41_16130 PF01638 HxlR-like helix-turn-helix J4N41_16135 PF00583 Acetyltransferase (GNAT) family J4N41_16140 PF00202 Aminotransferase class-III J4N41_16145 PF06339 Ectoine synthase J4N41_16150 PF13840 ACT domain J4N41_16150 PF00696 Amino acid kinase family J4N41_16160 PF00881 Nitroreductase family J4N41_16165 PF01380 SIS domain J4N41_16165 PF01418 Helix-turn-helix domain, rpiR family J4N41_16170 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N41_16175 PF09261 Alpha mannosidase middle domain J4N41_16175 PF07748 Glycosyl hydrolases family 38 C-terminal domain J4N41_16175 PF01074 Glycosyl hydrolases family 38 N-terminal domain J4N41_16180 PF00128 Alpha amylase, catalytic domain J4N41_16185 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N41_16185 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N41_16185 PF02378 Phosphotransferase system, EIIC J4N41_16210 PF00490 Delta-aminolevulinic acid dehydratase J4N41_16215 PF00108 Thiolase, N-terminal domain J4N41_16215 PF02803 Thiolase, C-terminal domain J4N41_16225 PF05853 beta-keto acid cleavage enzyme J4N41_16235 PF01758 Sodium Bile acid symporter family J4N41_16240 PF01609 Transposase DDE domain J4N41_16240 PF13006 Insertion element 4 transposase N-terminal J4N41_16255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_16255 PF03466 LysR substrate binding domain J4N41_16260 PF17848 Acetyl-coA carboxylase zinc finger domain J4N41_16260 PF01039 Carboxyl transferase domain J4N41_16270 PF02028 BCCT, betaine/carnitine/choline family transporter J4N41_16275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_16275 PF00512 His Kinase A (phospho-acceptor) domain J4N41_16275 PF01627 Hpt domain J4N41_16275 PF00072 Response regulator receiver domain J4N41_16275 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J4N41_16275 PF00672 HAMP domain J4N41_16285 PF00795 Carbon-nitrogen hydrolase J4N41_16290 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N41_16295 PF08241 Methyltransferase domain J4N41_16315 PF07859 alpha/beta hydrolase fold J4N41_16325 PF00005 ABC transporter J4N41_16325 PF00571 CBS domain J4N41_16330 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_16340 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N41_16340 PF12793 Sugar transport-related sRNA regulator N-term J4N41_16345 PF00881 Nitroreductase family J4N41_16350 PF01914 MarC family integral membrane protein J4N41_16360 PF03466 LysR substrate binding domain J4N41_16360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_16385 PF13629 Pilus formation protein N terminal region J4N41_16385 PF00263 Bacterial type II and III secretion system protein J4N41_16385 PF04972 BON domain J4N41_16395 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J4N41_16400 PF00437 Type II/IV secretion system protein J4N41_16450 PF02424 ApbE family J4N41_16455 PF02683 Cytochrome C biogenesis protein transmembrane region J4N41_16455 PF11412 Disulphide bond corrector protein DsbC J4N41_16460 PF00171 Aldehyde dehydrogenase family J4N41_16465 PF00672 HAMP domain J4N41_16465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N41_16465 PF17200 Single Cache domain 2 J4N41_16470 PF12849 PBP superfamily domain J4N41_16475 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_16480 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_16485 PF00005 ABC transporter J4N41_16490 PF03707 Bacterial signalling protein N terminal repeat J4N41_16490 PF00990 Diguanylate cyclase, GGDEF domain J4N41_16490 PF00563 EAL domain J4N41_16500 PF00375 Sodium:dicarboxylate symporter family J4N41_16505 PF03193 RsgA GTPase J4N41_16510 PF07238 PilZ domain J4N41_16510 PF12945 Flagellar protein YcgR J4N41_16515 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase J4N41_16535 PF00583 Acetyltransferase (GNAT) family J4N41_16545 PF12945 Flagellar protein YcgR J4N41_16545 PF07238 PilZ domain J4N41_16560 PF13302 Acetyltransferase (GNAT) domain J4N41_16570 PF00588 SpoU rRNA Methylase family J4N41_16570 PF08032 RNA 2'-O ribose methyltransferase substrate binding J4N41_16575 PF00037 4Fe-4S binding domain J4N41_16575 PF11953 Domain of unknown function (DUF3470) J4N41_16595 PF13443 Cro/C1-type HTH DNA-binding domain J4N41_16600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_16600 PF03466 LysR substrate binding domain J4N41_16605 PF00764 Arginosuccinate synthase J4N41_16620 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family J4N41_16640 PF00873 AcrB/AcrD/AcrF family J4N41_16650 PF07670 Nucleoside recognition J4N41_16655 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N41_16655 PF00970 Oxidoreductase FAD-binding domain J4N41_16655 PF00175 Oxidoreductase NAD-binding domain J4N41_16660 PF03063 Prismane/CO dehydrogenase family J4N41_16670 PF03466 LysR substrate binding domain J4N41_16670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_16685 PF00158 Sigma-54 interaction domain J4N41_16685 PF01590 GAF domain J4N41_16690 PF02311 AraC-like ligand binding domain J4N41_16690 PF12833 Helix-turn-helix domain J4N41_16715 PF04244 Deoxyribodipyrimidine photo-lyase-related protein J4N41_16725 PF03992 Antibiotic biosynthesis monooxygenase J4N41_16730 PF03733 Inner membrane component domain J4N41_16740 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N41_16745 PF00155 Aminotransferase class I and II J4N41_16750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_16750 PF03466 LysR substrate binding domain J4N41_16755 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N41_16765 PF01447 Thermolysin metallopeptidase, catalytic domain J4N41_16765 PF07504 Fungalysin/Thermolysin Propeptide Motif J4N41_16765 PF04151 Bacterial pre-peptidase C-terminal domain J4N41_16765 PF03413 Peptidase propeptide and YPEB domain J4N41_16765 PF02868 Thermolysin metallopeptidase, alpha-helical domain J4N41_16770 PF04151 Bacterial pre-peptidase C-terminal domain J4N41_16770 PF04389 Peptidase family M28 J4N41_16795 PF00909 Ammonium Transporter Family J4N41_16800 PF00072 Response regulator receiver domain J4N41_16810 PF04324 BFD-like [2Fe-2S] binding domain J4N41_16810 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N41_16815 PF01266 FAD dependent oxidoreductase J4N41_16835 PF08525 Opacity-associated protein A N-terminal motif J4N41_16835 PF01476 LysM domain J4N41_16835 PF01551 Peptidase family M23 J4N41_16840 PF03922 OmpW family J4N41_16850 PF00082 Subtilase family J4N41_16855 PF12729 Four helix bundle sensory module for signal transduction J4N41_16855 PF00672 HAMP domain J4N41_16855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N41_16865 PF00376 MerR family regulatory protein J4N41_16865 PF09278 MerR, DNA binding J4N41_16880 PF07690 Major Facilitator Superfamily J4N41_16885 PF00474 Sodium:solute symporter family J4N41_16905 PF03358 NADPH-dependent FMN reductase J4N41_16910 PF00892 EamA-like transporter family J4N41_16920 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J4N41_16920 PF11852 Domain of unknown function (DUF3372) J4N41_16920 PF03714 Bacterial pullanase-associated domain J4N41_16920 PF18494 Pullulanase Ins domain J4N41_16920 PF17967 Pullulanase N2 domain J4N41_16935 PF14489 QueF-like protein J4N41_16935 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term J4N41_16940 PF01497 Periplasmic binding protein J4N41_16940 PF12833 Helix-turn-helix domain J4N41_16945 PF00155 Aminotransferase class I and II J4N41_16950 PF00392 Bacterial regulatory proteins, gntR family J4N41_16950 PF00155 Aminotransferase class I and II J4N41_16960 PF01037 Lrp/AsnC ligand binding domain J4N41_16970 PF00672 HAMP domain J4N41_16970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N41_16975 PF01641 SelR domain J4N41_16975 PF01625 Peptide methionine sulfoxide reductase J4N41_16980 PF13599 Pentapeptide repeats (9 copies) J4N41_16995 PF03707 Bacterial signalling protein N terminal repeat J4N41_16995 PF00990 Diguanylate cyclase, GGDEF domain J4N41_16995 PF00563 EAL domain J4N41_17000 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 J4N41_17010 PF00873 AcrB/AcrD/AcrF family J4N41_17015 PF00873 AcrB/AcrD/AcrF family J4N41_17025 PF00440 Bacterial regulatory proteins, tetR family J4N41_17025 PF13977 BetI-type transcriptional repressor, C-terminal J4N41_17040 PF00486 Transcriptional regulatory protein, C terminal J4N41_17040 PF00072 Response regulator receiver domain J4N41_17045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_17045 PF00512 His Kinase A (phospho-acceptor) domain J4N41_17045 PF13426 PAS domain J4N41_17045 PF00672 HAMP domain J4N41_17050 PF13673 Acetyltransferase (GNAT) domain J4N41_17065 PF00672 HAMP domain J4N41_17065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_17065 PF00512 His Kinase A (phospho-acceptor) domain J4N41_17065 PF00072 Response regulator receiver domain J4N41_17065 PF17149 Periplasmic sensor domain found in signal transduction proteins J4N41_17065 PF01627 Hpt domain J4N41_17080 PF10415 Fumarase C C-terminus J4N41_17080 PF00206 Lyase J4N41_17105 PF17773 UPF0176 acylphosphatase like domain J4N41_17105 PF00581 Rhodanese-like domain J4N41_17130 PF00291 Pyridoxal-phosphate dependent enzyme J4N41_17140 PF00491 Arginase family J4N41_17145 PF00155 Aminotransferase class I and II J4N41_17145 PF00392 Bacterial regulatory proteins, gntR family J4N41_17155 PF07885 Ion channel J4N41_17175 PF01323 DSBA-like thioredoxin domain J4N41_17185 PF01638 HxlR-like helix-turn-helix J4N41_17200 PF03795 YCII-related domain J4N41_17205 PF08281 Sigma-70, region 4 J4N41_17205 PF04542 Sigma-70 region 2 J4N41_17210 PF02798 Glutathione S-transferase, N-terminal domain J4N41_17215 PF13419 Haloacid dehalogenase-like hydrolase J4N41_17220 PF00128 Alpha amylase, catalytic domain J4N41_17240 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J4N41_17240 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J4N41_17245 PF00141 Peroxidase J4N41_17255 PF16884 N-terminal domain of oxidoreductase J4N41_17255 PF00107 Zinc-binding dehydrogenase J4N41_17260 PF00440 Bacterial regulatory proteins, tetR family J4N41_17260 PF16925 Tetracyclin repressor-like, C-terminal domain J4N41_17265 PF00990 Diguanylate cyclase, GGDEF domain J4N41_17275 PF04266 ASCH domain J4N41_17280 PF00271 Helicase conserved C-terminal domain J4N41_17280 PF00270 DEAD/DEAH box helicase J4N41_17290 PF01979 Amidohydrolase family J4N41_17305 PF00356 Bacterial regulatory proteins, lacI family J4N41_17315 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_17320 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_17325 PF03636 Glycosyl hydrolase family 65, N-terminal domain J4N41_17325 PF03633 Glycosyl hydrolase family 65, C-terminal domain J4N41_17325 PF03632 Glycosyl hydrolase family 65 central catalytic domain J4N41_17330 PF13419 Haloacid dehalogenase-like hydrolase J4N41_17335 PF00005 ABC transporter J4N41_17335 PF08402 TOBE domain J4N41_17345 PF08244 Glycosyl hydrolases family 32 C terminal J4N41_17345 PF00251 Glycosyl hydrolases family 32 N-terminal domain J4N41_17350 PF00128 Alpha amylase, catalytic domain J4N41_17355 PF00356 Bacterial regulatory proteins, lacI family J4N41_17370 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_17375 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_17380 PF17912 MalK OB fold domain J4N41_17380 PF03459 TOBE domain J4N41_17380 PF00005 ABC transporter J4N41_17385 PF01915 Glycosyl hydrolase family 3 C-terminal domain J4N41_17385 PF00933 Glycosyl hydrolase family 3 N terminal domain J4N41_17385 PF14310 Fibronectin type III-like domain J4N41_17395 PF00128 Alpha amylase, catalytic domain J4N41_17400 PF12464 Maltose acetyltransferase J4N41_17400 PF14602 Hexapeptide repeat of succinyl-transferase J4N41_17425 PF04231 Endonuclease I J4N41_17440 PF00849 RNA pseudouridylate synthase J4N41_17450 PF00756 Putative esterase J4N41_17455 PF08240 Alcohol dehydrogenase GroES-like domain J4N41_17455 PF00107 Zinc-binding dehydrogenase J4N41_17460 PF03466 LysR substrate binding domain J4N41_17460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_17465 PF07690 Major Facilitator Superfamily J4N41_17480 PF01810 LysE type translocator J4N41_17485 PF01037 Lrp/AsnC ligand binding domain J4N41_17490 PF03129 Anticodon binding domain J4N41_17490 PF02824 TGS domain J4N41_17490 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J4N41_17490 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J4N41_17495 PF00707 Translation initiation factor IF-3, C-terminal domain J4N41_17495 PF05198 Translation initiation factor IF-3, N-terminal domain J4N41_17500 PF01632 Ribosomal protein L35 J4N41_17505 PF00453 Ribosomal protein L20 J4N41_17510 PF01266 FAD dependent oxidoreductase J4N41_17530 PF00171 Aldehyde dehydrogenase family J4N41_17535 PF00158 Sigma-54 interaction domain J4N41_17535 PF01590 GAF domain J4N41_17535 PF02954 Bacterial regulatory protein, Fis family J4N41_17560 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain J4N41_17560 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J4N41_17565 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase J4N41_17570 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain J4N41_17570 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain J4N41_17575 PF01966 HD domain J4N41_17595 PF07690 Major Facilitator Superfamily J4N41_17600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_17600 PF05231 MASE1 J4N41_17600 PF07730 Histidine kinase J4N41_17605 PF00196 Bacterial regulatory proteins, luxR family J4N41_17605 PF00072 Response regulator receiver domain J4N41_17610 PF07690 Major Facilitator Superfamily J4N41_17625 PF01979 Amidohydrolase family J4N41_17630 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N41_17630 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N41_17630 PF03476 MOSC N-terminal beta barrel domain J4N41_17630 PF03473 MOSC domain J4N41_17630 PF03476 MOSC N-terminal beta barrel domain J4N41_17630 PF03473 MOSC domain J4N41_17635 PF00196 Bacterial regulatory proteins, luxR family J4N41_17635 PF03472 Autoinducer binding domain J4N41_17640 PF08220 DeoR-like helix-turn-helix domain J4N41_17640 PF00455 DeoR C terminal sensor domain J4N41_17660 PF05661 Protein of unknown function (DUF808) J4N41_17670 PF00128 Alpha amylase, catalytic domain J4N41_17675 PF02743 Cache domain J4N41_17675 PF00672 HAMP domain J4N41_17675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N41_17695 PF12849 PBP superfamily domain J4N41_17700 PF01575 MaoC like domain J4N41_17710 PF08525 Opacity-associated protein A N-terminal motif J4N41_17710 PF01476 LysM domain J4N41_17710 PF01551 Peptidase family M23 J4N41_17720 PF07690 Major Facilitator Superfamily J4N41_17725 PF00005 ABC transporter J4N41_17730 PF01032 FecCD transport family J4N41_17740 PF02472 Biopolymer transport protein ExbD/TolR J4N41_17745 PF01618 MotA/TolQ/ExbB proton channel family J4N41_17750 PF03544 Gram-negative bacterial TonB protein C-terminal J4N41_17755 PF04055 Radical SAM superfamily J4N41_17760 PF06228 Haem utilisation ChuX/HutX J4N41_17765 PF01243 Pyridoxamine 5'-phosphate oxidase J4N41_17770 PF01923 Cobalamin adenosyltransferase J4N41_17775 PF00005 ABC transporter J4N41_17775 PF08402 TOBE domain J4N41_17780 PF01547 Bacterial extracellular solute-binding protein J4N41_17785 PF14785 Maltose transport system permease protein MalF P2 domain J4N41_17785 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_17790 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_17800 PF12793 Sugar transport-related sRNA regulator N-term J4N41_17800 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N41_17825 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J4N41_17825 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J4N41_17840 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J4N41_17840 PF00072 Response regulator receiver domain J4N41_17840 PF01627 Hpt domain J4N41_17840 PF00672 HAMP domain J4N41_17840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_17840 PF00512 His Kinase A (phospho-acceptor) domain J4N41_17845 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J4N41_17850 PF03741 Integral membrane protein TerC family J4N41_17855 PF07969 Amidohydrolase family J4N41_17860 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin J4N41_17865 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N41_17865 PF00529 HlyD membrane-fusion protein of T1SS J4N41_17890 PF00486 Transcriptional regulatory protein, C terminal J4N41_17890 PF00072 Response regulator receiver domain J4N41_17895 PF00672 HAMP domain J4N41_17895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_17895 PF00512 His Kinase A (phospho-acceptor) domain J4N41_17905 PF00155 Aminotransferase class I and II J4N41_17905 PF00392 Bacterial regulatory proteins, gntR family J4N41_17910 PF13230 Glutamine amidotransferases class-II J4N41_17915 PF13520 Amino acid permease J4N41_17925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_17925 PF03466 LysR substrate binding domain J4N41_17935 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J4N41_17940 PF02566 OsmC-like protein J4N41_17945 PF01609 Transposase DDE domain J4N41_17945 PF13006 Insertion element 4 transposase N-terminal J4N41_17950 PF14602 Hexapeptide repeat of succinyl-transferase J4N41_17950 PF12464 Maltose acetyltransferase J4N41_17955 PF00892 EamA-like transporter family J4N41_17975 PF13519 von Willebrand factor type A domain J4N41_17975 PF07584 Aerotolerance regulator N-terminal J4N41_17980 PF07584 Aerotolerance regulator N-terminal J4N41_17980 PF00092 von Willebrand factor type A domain J4N41_17990 PF01882 Protein of unknown function DUF58 J4N41_17995 PF07726 ATPase family associated with various cellular activities (AAA) J4N41_17995 PF17863 AAA lid domain J4N41_18000 PF00672 HAMP domain J4N41_18000 PF02743 Cache domain J4N41_18000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N41_18020 PF18719 ArlS sensor domain J4N41_18020 PF00512 His Kinase A (phospho-acceptor) domain J4N41_18020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_18025 PF00486 Transcriptional regulatory protein, C terminal J4N41_18025 PF00072 Response regulator receiver domain J4N41_18030 PF03150 Di-haem cytochrome c peroxidase J4N41_18035 PF00072 Response regulator receiver domain J4N41_18035 PF00486 Transcriptional regulatory protein, C terminal J4N41_18040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_18040 PF00512 His Kinase A (phospho-acceptor) domain J4N41_18040 PF00672 HAMP domain J4N41_18045 PF06123 Inner membrane protein CreD J4N41_18050 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N41_18055 PF03466 LysR substrate binding domain J4N41_18055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_18060 PF00155 Aminotransferase class I and II J4N41_18065 PF00107 Zinc-binding dehydrogenase J4N41_18065 PF08240 Alcohol dehydrogenase GroES-like domain J4N41_18070 PF00194 Eukaryotic-type carbonic anhydrase J4N41_18080 PF01773 Na+ dependent nucleoside transporter N-terminus J4N41_18080 PF07670 Nucleoside recognition J4N41_18080 PF07662 Na+ dependent nucleoside transporter C-terminus J4N41_18085 PF07687 Peptidase dimerisation domain J4N41_18085 PF01546 Peptidase family M20/M25/M40 J4N41_18110 PF09456 RcsC Alpha-Beta-Loop (ABL) J4N41_18110 PF00072 Response regulator receiver domain J4N41_18110 PF00512 His Kinase A (phospho-acceptor) domain J4N41_18110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_18115 PF09456 RcsC Alpha-Beta-Loop (ABL) J4N41_18115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_18115 PF00512 His Kinase A (phospho-acceptor) domain J4N41_18115 PF00072 Response regulator receiver domain J4N41_18120 PF00512 His Kinase A (phospho-acceptor) domain J4N41_18120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_18120 PF01627 Hpt domain J4N41_18120 PF00672 HAMP domain J4N41_18120 PF00072 Response regulator receiver domain J4N41_18120 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J4N41_18130 PF03466 LysR substrate binding domain J4N41_18130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_18140 PF13193 AMP-binding enzyme C-terminal domain J4N41_18140 PF00501 AMP-binding enzyme J4N41_18145 PF00351 Biopterin-dependent aromatic amino acid hydroxylase J4N41_18150 PF01329 Pterin 4 alpha carbinolamine dehydratase J4N41_18185 PF02355 Protein export membrane protein J4N41_18185 PF07549 SecD/SecF GG Motif J4N41_18185 PF13721 SecD export protein N-terminal TM region J4N41_18190 PF02355 Protein export membrane protein J4N41_18190 PF07549 SecD/SecF GG Motif J4N41_18215 PF00465 Iron-containing alcohol dehydrogenase J4N41_18230 PF03466 LysR substrate binding domain J4N41_18230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_18235 PF13419 Haloacid dehalogenase-like hydrolase J4N41_18260 PF13419 Haloacid dehalogenase-like hydrolase J4N41_18265 PF00202 Aminotransferase class-III J4N41_18270 PF00266 Aminotransferase class-V J4N41_18280 PF00005 ABC transporter J4N41_18285 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_18290 PF00392 Bacterial regulatory proteins, gntR family J4N41_18290 PF07702 UTRA domain J4N41_18305 PF18027 Cytosolic carboxypeptidase N-terminal domain J4N41_18305 PF00246 Zinc carboxypeptidase J4N41_18310 PF01266 FAD dependent oxidoreductase J4N41_18315 PF03466 LysR substrate binding domain J4N41_18315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_18320 PF03315 Serine dehydratase beta chain J4N41_18320 PF03313 Serine dehydratase alpha chain J4N41_18340 PF00990 Diguanylate cyclase, GGDEF domain J4N41_18345 PF00072 Response regulator receiver domain J4N41_18345 PF01584 CheW-like domain J4N41_18360 PF08329 Chitinase A, N-terminal domain J4N41_18360 PF00704 Glycosyl hydrolases family 18 J4N41_18370 PF01212 Beta-eliminating lyase J4N41_18375 PF00293 NUDIX domain J4N41_18380 PF17868 AAA lid domain J4N41_18380 PF12592 Protein of unknown function (DUF3763) J4N41_18380 PF07728 AAA domain (dynein-related subfamily) J4N41_18385 PF05762 VWA domain containing CoxE-like protein J4N41_18400 PF01037 Lrp/AsnC ligand binding domain J4N41_18405 PF00990 Diguanylate cyclase, GGDEF domain J4N41_18405 PF08448 PAS fold J4N41_18410 PF01047 MarR family J4N41_18415 PF02028 BCCT, betaine/carnitine/choline family transporter J4N41_18430 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N41_18435 PF00873 AcrB/AcrD/AcrF family J4N41_18440 PF00291 Pyridoxal-phosphate dependent enzyme J4N41_18460 PF03222 Tryptophan/tyrosine permease family J4N41_18465 PF04336 Acyl carrier protein phosphodiesterase J4N41_18470 PF00270 DEAD/DEAH box helicase J4N41_18470 PF00271 Helicase conserved C-terminal domain J4N41_18475 PF12729 Four helix bundle sensory module for signal transduction J4N41_18475 PF00672 HAMP domain J4N41_18475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N41_18480 PF13419 Haloacid dehalogenase-like hydrolase J4N41_18485 PF00294 pfkB family carbohydrate kinase J4N41_18500 PF13419 Haloacid dehalogenase-like hydrolase J4N41_18515 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J4N41_18515 PF01568 Molydopterin dinucleotide binding domain J4N41_18515 PF00384 Molybdopterin oxidoreductase J4N41_18520 PF10414 Sirohaem synthase dimerisation region J4N41_18520 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N41_18520 PF14824 Sirohaem biosynthesis protein central J4N41_18525 PF00591 Glycosyl transferase family, a/b domain J4N41_18525 PF02885 Glycosyl transferase family, helical bundle domain J4N41_18530 PF00072 Response regulator receiver domain J4N41_18530 PF03861 ANTAR domain J4N41_18535 PF00005 ABC transporter J4N41_18540 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_18545 PF00005 ABC transporter J4N41_18550 PF04324 BFD-like [2Fe-2S] binding domain J4N41_18550 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J4N41_18550 PF18267 Rubredoxin NAD+ reductase C-terminal domain J4N41_18550 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain J4N41_18550 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N41_18550 PF13806 Rieske-like [2Fe-2S] domain J4N41_18555 PF00355 Rieske [2Fe-2S] domain J4N41_18560 PF03150 Di-haem cytochrome c peroxidase J4N41_18575 PF11756 Nitrous oxide-stimulated promoter J4N41_18580 PF07690 Major Facilitator Superfamily J4N41_18585 PF00085 Thioredoxin J4N41_18590 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J4N41_18590 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J4N41_18595 PF00149 Calcineurin-like phosphoesterase J4N41_18595 PF12320 Type 5 capsule protein repressor C-terminal domain J4N41_18600 PF13476 AAA domain J4N41_18605 PF00072 Response regulator receiver domain J4N41_18605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_18610 PF00155 Aminotransferase class I and II J4N41_18620 PF00654 Voltage gated chloride channel J4N41_18625 PF02492 CobW/HypB/UreG, nucleotide-binding domain J4N41_18625 PF07683 Cobalamin synthesis protein cobW C-terminal domain J4N41_18630 PF01926 50S ribosome-binding GTPase J4N41_18640 PF00990 Diguanylate cyclase, GGDEF domain J4N41_18645 PF00672 HAMP domain J4N41_18645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N41_18655 PF01037 Lrp/AsnC ligand binding domain J4N41_18655 PF13404 AsnC-type helix-turn-helix domain J4N41_18675 PF08240 Alcohol dehydrogenase GroES-like domain J4N41_18675 PF00107 Zinc-binding dehydrogenase J4N41_18680 PF02378 Phosphotransferase system, EIIC J4N41_18680 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N41_18685 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N41_18690 PF02779 Transketolase, pyrimidine binding domain J4N41_18690 PF02780 Transketolase, C-terminal domain J4N41_18690 PF00456 Transketolase, thiamine diphosphate binding domain J4N41_18695 PF00923 Transaldolase/Fructose-6-phosphate aldolase J4N41_18705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_18705 PF03466 LysR substrate binding domain J4N41_18720 PF00581 Rhodanese-like domain J4N41_18725 PF00899 ThiF family J4N41_18730 PF00994 Probable molybdopterin binding domain J4N41_18730 PF03454 MoeA C-terminal region (domain IV) J4N41_18730 PF03453 MoeA N-terminal region (domain I and II) J4N41_18735 PF01227 GTP cyclohydrolase I J4N41_18740 PF00270 DEAD/DEAH box helicase J4N41_18740 PF03880 DbpA RNA binding domain J4N41_18740 PF00271 Helicase conserved C-terminal domain J4N41_18745 PF01641 SelR domain J4N41_18745 PF01625 Peptide methionine sulfoxide reductase J4N41_18775 PF13340 Putative transposase of IS4/5 family (DUF4096) J4N41_18780 PF01081 KDPG and KHG aldolase J4N41_18785 PF02142 MGS-like domain J4N41_18790 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family J4N41_18795 PF00672 HAMP domain J4N41_18795 PF01627 Hpt domain J4N41_18795 PF00072 Response regulator receiver domain J4N41_18795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_18795 PF00512 His Kinase A (phospho-acceptor) domain J4N41_18805 PF00465 Iron-containing alcohol dehydrogenase J4N41_18810 PF06719 AraC-type transcriptional regulator N-terminus J4N41_18810 PF12833 Helix-turn-helix domain J4N41_18815 PF00483 Nucleotidyl transferase J4N41_18820 PF00990 Diguanylate cyclase, GGDEF domain J4N41_18825 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N41_18825 PF02378 Phosphotransferase system, EIIC J4N41_18830 PF00294 pfkB family carbohydrate kinase J4N41_18835 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N41_18835 PF00381 PTS HPr component phosphorylation site J4N41_18840 PF00356 Bacterial regulatory proteins, lacI family J4N41_18840 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family J4N41_18855 PF07685 CobB/CobQ-like glutamine amidotransferase domain J4N41_18855 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J4N41_18865 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_18870 PF03459 TOBE domain J4N41_18870 PF00005 ABC transporter J4N41_18880 PF00563 EAL domain J4N41_18880 PF00990 Diguanylate cyclase, GGDEF domain J4N41_18880 PF00360 Phytochrome region J4N41_18880 PF01590 GAF domain J4N41_18885 PF00990 Diguanylate cyclase, GGDEF domain J4N41_18885 PF07694 5TMR of 5TMR-LYT J4N41_18900 PF05222 Alanine dehydrogenase/PNT, N-terminal domain J4N41_18900 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch J4N41_18900 PF01262 Alanine dehydrogenase/PNT, C-terminal domain J4N41_18905 PF02233 NAD(P) transhydrogenase beta subunit J4N41_18915 PF00486 Transcriptional regulatory protein, C terminal J4N41_18915 PF00072 Response regulator receiver domain J4N41_18930 PF03701 Uncharacterised protein family (UPF0181) J4N41_18945 PF02463 RecF/RecN/SMC N terminal domain J4N41_18985 PF01253 Translation initiation factor SUI1 J4N41_19000 PF01820 D-ala D-ala ligase N-terminus J4N41_19000 PF07478 D-ala D-ala ligase C-terminus J4N41_19005 PF05036 Sporulation related domain J4N41_19010 PF13380 CoA binding domain J4N41_19010 PF13607 Succinyl-CoA ligase like flavodoxin domain J4N41_19010 PF00583 Acetyltransferase (GNAT) family J4N41_19015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_19015 PF03466 LysR substrate binding domain J4N41_19020 PF07715 TonB-dependent Receptor Plug Domain J4N41_19020 PF00593 TonB dependent receptor J4N41_19025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N41_19025 PF00672 HAMP domain J4N41_19025 PF12729 Four helix bundle sensory module for signal transduction J4N41_19030 PF00676 Dehydrogenase E1 component J4N41_19035 PF02779 Transketolase, pyrimidine binding domain J4N41_19035 PF02780 Transketolase, C-terminal domain J4N41_19040 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J4N41_19040 PF00364 Biotin-requiring enzyme J4N41_19040 PF02817 e3 binding domain J4N41_19045 PF00990 Diguanylate cyclase, GGDEF domain J4N41_19050 PF00766 Electron transfer flavoprotein FAD-binding domain J4N41_19050 PF01012 Electron transfer flavoprotein domain J4N41_19055 PF01012 Electron transfer flavoprotein domain J4N41_19065 PF00127 Copper binding proteins, plastocyanin/azurin family J4N41_19075 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J4N41_19075 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J4N41_19080 PF00378 Enoyl-CoA hydratase/isomerase J4N41_19085 PF00378 Enoyl-CoA hydratase/isomerase J4N41_19090 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J4N41_19090 PF02770 Acyl-CoA dehydrogenase, middle domain J4N41_19090 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J4N41_19095 PF00171 Aldehyde dehydrogenase family J4N41_19100 PF00108 Thiolase, N-terminal domain J4N41_19100 PF02803 Thiolase, C-terminal domain J4N41_19105 PF00376 MerR family regulatory protein J4N41_19105 PF09278 MerR, DNA binding J4N41_19110 PF02770 Acyl-CoA dehydrogenase, middle domain J4N41_19110 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J4N41_19110 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J4N41_19115 PF01039 Carboxyl transferase domain J4N41_19120 PF00378 Enoyl-CoA hydratase/isomerase J4N41_19125 PF00682 HMGL-like J4N41_19145 PF01810 LysE type translocator J4N41_19150 PF07681 DoxX J4N41_19155 PF17954 Quercetinase C-terminal cupin domain J4N41_19155 PF02678 Pirin J4N41_19165 PF01235 Sodium:alanine symporter family J4N41_19170 PF03466 LysR substrate binding domain J4N41_19170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_19175 PF13460 NAD(P)H-binding J4N41_19185 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading J4N41_19185 PF18416 N-acetylglucosamine binding protein domain 2 J4N41_19205 PF00529 HlyD membrane-fusion protein of T1SS J4N41_19210 PF00005 ABC transporter J4N41_19210 PF00664 ABC transporter transmembrane region J4N41_19215 PF00005 ABC transporter J4N41_19235 PF00871 Acetokinase family J4N41_19240 PF00563 EAL domain J4N41_19240 PF03707 Bacterial signalling protein N terminal repeat J4N41_19240 PF00990 Diguanylate cyclase, GGDEF domain J4N41_19245 PF13411 MerR HTH family regulatory protein J4N41_19255 PF07733 Bacterial DNA polymerase III alpha NTPase domain J4N41_19255 PF02811 PHP domain J4N41_19255 PF00929 Exonuclease J4N41_19255 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J4N41_19255 PF14579 Helix-hairpin-helix motif J4N41_19265 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N41_19265 PF12793 Sugar transport-related sRNA regulator N-term J4N41_19275 PF03061 Thioesterase superfamily J4N41_19280 PF01435 Peptidase family M48 J4N41_19310 PF03741 Integral membrane protein TerC family J4N41_19315 PF00149 Calcineurin-like phosphoesterase J4N41_19315 PF02872 5'-nucleotidase, C-terminal domain J4N41_19320 PF11398 Protein of unknown function (DUF2813) J4N41_19325 PF06496 Protein of unknown function (DUF1097) J4N41_19330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_19330 PF03466 LysR substrate binding domain J4N41_19335 PF01226 Formate/nitrite transporter J4N41_19340 PF04264 YceI-like domain J4N41_19345 PF01292 Prokaryotic cytochrome b561 J4N41_19365 PF03606 C4-dicarboxylate anaerobic carrier J4N41_19370 PF00196 Bacterial regulatory proteins, luxR family J4N41_19370 PF00072 Response regulator receiver domain J4N41_19375 PF00672 HAMP domain J4N41_19375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_19375 PF07730 Histidine kinase J4N41_19375 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term J4N41_19380 PF12838 4Fe-4S dicluster domain J4N41_19380 PF13187 4Fe-4S dicluster domain J4N41_19390 PF01568 Molydopterin dinucleotide binding domain J4N41_19390 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J4N41_19390 PF00384 Molybdopterin oxidoreductase J4N41_19395 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) J4N41_19400 PF03264 NapC/NirT cytochrome c family, N-terminal region J4N41_19410 PF16363 GDP-mannose 4,6 dehydratase J4N41_19415 PF03746 LamB/YcsF family J4N41_19425 PF02626 Carboxyltransferase domain, subdomain A and B J4N41_19440 PF00005 ABC transporter J4N41_19445 PF13472 GDSL-like Lipase/Acylhydrolase family J4N41_19450 PF07055 Enoyl reductase FAD binding domain J4N41_19450 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase J4N41_19450 PF12241 Trans-2-enoyl-CoA reductase catalytic region J4N41_19455 PF00990 Diguanylate cyclase, GGDEF domain J4N41_19455 PF00563 EAL domain J4N41_19455 PF00498 FHA domain J4N41_19465 PF00226 DnaJ domain J4N41_19465 PF01556 DnaJ C terminal domain J4N41_19465 PF00684 DnaJ central domain J4N41_19480 PF03091 CutA1 divalent ion tolerance protein J4N41_19485 PF12462 DNA helicase IV / RNA helicase N terminal J4N41_19485 PF00580 UvrD/REP helicase N-terminal domain J4N41_19485 PF13361 UvrD-like helicase C-terminal domain J4N41_19490 PF12805 FUSC-like inner membrane protein yccS J4N41_19510 PF01266 FAD dependent oxidoreductase J4N41_19510 PF16901 C-terminal domain of alpha-glycerophosphate oxidase J4N41_19520 PF09308 LuxQ, periplasmic J4N41_19520 PF00072 Response regulator receiver domain J4N41_19520 PF00512 His Kinase A (phospho-acceptor) domain J4N41_19520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_19525 PF13407 Periplasmic binding protein domain J4N41_19535 PF01541 GIY-YIG catalytic domain J4N41_19540 PF04337 Protein of unknown function, DUF480 J4N41_19550 PF04363 Protein of unknown function (DUF496) J4N41_19560 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J4N41_19560 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J4N41_19565 PF00230 Major intrinsic protein J4N41_19570 PF01266 FAD dependent oxidoreductase J4N41_19570 PF04324 BFD-like [2Fe-2S] binding domain J4N41_19575 PF00890 FAD binding domain J4N41_19580 PF13183 4Fe-4S dicluster domain J4N41_19580 PF02754 Cysteine-rich domain J4N41_19600 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N41_19600 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J4N41_19610 PF08443 RimK-like ATP-grasp domain J4N41_19610 PF18030 RimK PreATP-grasp domain J4N41_19615 PF00155 Aminotransferase class I and II J4N41_19625 PF13597 Anaerobic ribonucleoside-triphosphate reductase J4N41_19625 PF03477 ATP cone domain J4N41_19635 PF04143 Sulphur transport J4N41_19655 PF05547 Immune inhibitor A peptidase M6 J4N41_19655 PF00801 PKD domain J4N41_19660 PF00657 GDSL-like Lipase/Acylhydrolase J4N41_19665 PF07690 Major Facilitator Superfamily J4N41_19670 PF01177 Asp/Glu/Hydantoin racemase J4N41_19675 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus J4N41_19675 PF00561 alpha/beta hydrolase fold J4N41_19685 PF00108 Thiolase, N-terminal domain J4N41_19685 PF02803 Thiolase, C-terminal domain J4N41_19690 PF00106 short chain dehydrogenase J4N41_19695 PF00440 Bacterial regulatory proteins, tetR family J4N41_19695 PF08361 MAATS-type transcriptional repressor, C-terminal region J4N41_19705 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE J4N41_19735 PF01037 Lrp/AsnC ligand binding domain J4N41_19745 PF05947 Type VI secretion system, TssF J4N41_19755 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath J4N41_19770 PF00069 Protein kinase domain J4N41_19770 PF03793 PASTA domain J4N41_19795 PF04717 Type VI secretion system, phage-baseplate injector J4N41_19800 PF05638 Type VI secretion system effector, Hcp J4N41_19805 PF10431 C-terminal, D2-small domain, of ClpB protein J4N41_19805 PF17871 AAA lid domain J4N41_19805 PF07724 AAA domain (Cdc48 subfamily) J4N41_19805 PF00004 ATPase family associated with various cellular activities (AAA) J4N41_19810 PF01590 GAF domain J4N41_19810 PF02954 Bacterial regulatory protein, Fis family J4N41_19810 PF00158 Sigma-54 interaction domain J4N41_19815 PF00691 OmpA family J4N41_19815 PF05736 OprF membrane domain J4N41_19845 PF01476 LysM domain J4N41_19845 PF01551 Peptidase family M23 J4N41_19845 PF08525 Opacity-associated protein A N-terminal motif J4N41_19855 PF17200 Single Cache domain 2 J4N41_19855 PF00672 HAMP domain J4N41_19855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N41_19865 PF08774 VRR-NUC domain J4N41_19865 PF18081 Fanconi anemia-associated nuclease SAP domain J4N41_19880 PF01268 Formate--tetrahydrofolate ligase J4N41_19900 PF03707 Bacterial signalling protein N terminal repeat J4N41_19900 PF00563 EAL domain J4N41_19900 PF00990 Diguanylate cyclase, GGDEF domain J4N41_19905 PF00072 Response regulator receiver domain J4N41_19905 PF00990 Diguanylate cyclase, GGDEF domain J4N41_19910 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N41_19910 PF00005 ABC transporter J4N41_19915 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_19915 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N41_19920 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_19925 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N41_19935 PF17200 Single Cache domain 2 J4N41_19935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N41_19935 PF00672 HAMP domain J4N41_19940 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N41_19940 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J4N41_19945 PF05362 Lon protease (S16) C-terminal proteolytic domain J4N41_19945 PF13654 AAA domain J4N41_19955 PF00005 ABC transporter J4N41_19955 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N41_19960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_19960 PF03466 LysR substrate binding domain J4N41_19965 PF02652 L-lactate permease J4N41_19970 PF01070 FMN-dependent dehydrogenase J4N41_19985 PF00005 ABC transporter J4N41_19985 PF00571 CBS domain J4N41_19990 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_19995 PF04069 Substrate binding domain of ABC-type glycine betaine transport system J4N41_20000 PF00732 GMC oxidoreductase J4N41_20000 PF05199 GMC oxidoreductase J4N41_20005 PF00171 Aldehyde dehydrogenase family J4N41_20010 PF13977 BetI-type transcriptional repressor, C-terminal J4N41_20010 PF00440 Bacterial regulatory proteins, tetR family J4N41_20020 PF02627 Carboxymuconolactone decarboxylase family J4N41_20025 PF02525 Flavodoxin-like fold J4N41_20030 PF00392 Bacterial regulatory proteins, gntR family J4N41_20030 PF00155 Aminotransferase class I and II J4N41_20040 PF12792 CSS motif domain associated with EAL J4N41_20040 PF00563 EAL domain J4N41_20045 PF12852 Cupin J4N41_20045 PF12833 Helix-turn-helix domain J4N41_20050 PF07690 Major Facilitator Superfamily J4N41_20055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_20055 PF03466 LysR substrate binding domain J4N41_20060 PF04794 YdjC-like protein J4N41_20065 PF03473 MOSC domain J4N41_20065 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N41_20065 PF03476 MOSC N-terminal beta barrel domain J4N41_20070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_20070 PF00512 His Kinase A (phospho-acceptor) domain J4N41_20070 PF00989 PAS fold J4N41_20070 PF01627 Hpt domain J4N41_20070 PF00072 Response regulator receiver domain J4N41_20070 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N41_20080 PF07859 alpha/beta hydrolase fold J4N41_20080 PF00934 PE family J4N41_20085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_20085 PF03466 LysR substrate binding domain J4N41_20090 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg J4N41_20090 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase J4N41_20090 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II J4N41_20095 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J4N41_20100 PF00132 Bacterial transferase hexapeptide (six repeats) J4N41_20105 PF00144 Beta-lactamase J4N41_20120 PF00072 Response regulator receiver domain J4N41_20120 PF00196 Bacterial regulatory proteins, luxR family J4N41_20135 PF00478 IMP dehydrogenase / GMP reductase domain J4N41_20140 PF01256 Carbohydrate kinase J4N41_20140 PF03853 YjeF-related protein N-terminus J4N41_20155 PF00072 Response regulator receiver domain J4N41_20160 PF00672 HAMP domain J4N41_20160 PF00512 His Kinase A (phospho-acceptor) domain J4N41_20160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_20160 PF01627 Hpt domain J4N41_20160 PF00072 Response regulator receiver domain J4N41_20160 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J4N41_20170 PF13581 Histidine kinase-like ATPase domain J4N41_20180 PF08678 Rsbr N terminal J4N41_20180 PF01740 STAS domain J4N41_20185 PF08447 PAS fold J4N41_20185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N41_20205 PF08206 Ribonuclease B OB domain J4N41_20205 PF00773 RNB domain J4N41_20205 PF00575 S1 RNA binding domain J4N41_20210 PF00271 Helicase conserved C-terminal domain J4N41_20210 PF00270 DEAD/DEAH box helicase J4N41_20210 PF03880 DbpA RNA binding domain J4N41_20220 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N41_20220 PF00512 His Kinase A (phospho-acceptor) domain J4N41_20220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_20225 PF11849 Domain of unknown function (DUF3369) J4N41_20230 PF00356 Bacterial regulatory proteins, lacI family J4N41_20235 PF00294 pfkB family carbohydrate kinase J4N41_20240 PF13407 Periplasmic binding protein domain J4N41_20245 PF02653 Branched-chain amino acid transport system / permease component J4N41_20250 PF00005 ABC transporter J4N41_20255 PF05025 RbsD / FucU transport protein family J4N41_20270 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J4N41_20270 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J4N41_20270 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J4N41_20275 PF00909 Ammonium Transporter Family J4N41_20300 PF00155 Aminotransferase class I and II J4N41_20300 PF00392 Bacterial regulatory proteins, gntR family J4N41_20335 PF03413 Peptidase propeptide and YPEB domain J4N41_20335 PF01447 Thermolysin metallopeptidase, catalytic domain J4N41_20335 PF02868 Thermolysin metallopeptidase, alpha-helical domain J4N41_20335 PF04151 Bacterial pre-peptidase C-terminal domain J4N41_20335 PF07504 Fungalysin/Thermolysin Propeptide Motif J4N41_20350 PF00356 Bacterial regulatory proteins, lacI family J4N41_20350 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family J4N41_20355 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain J4N41_20355 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J4N41_20360 PF01202 Shikimate kinase J4N41_20365 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J4N41_20365 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component J4N41_20375 PF03480 Bacterial extracellular solute-binding protein, family 7 J4N41_20385 PF00563 EAL domain J4N41_20385 PF00990 Diguanylate cyclase, GGDEF domain J4N41_20385 PF03707 Bacterial signalling protein N terminal repeat J4N41_20400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_20400 PF03466 LysR substrate binding domain J4N41_20405 PF00990 Diguanylate cyclase, GGDEF domain J4N41_20405 PF00563 EAL domain J4N41_20415 PF06865 Pyrimidine/purine nucleoside phosphorylase J4N41_20425 PF00924 Mechanosensitive ion channel J4N41_20435 PF12706 Beta-lactamase superfamily domain J4N41_20445 PF02397 Bacterial sugar transferase J4N41_20455 PF10531 SLBB domain J4N41_20455 PF18412 Outer-membrane lipoprotein Wza C-terminal domain J4N41_20455 PF02563 Polysaccharide biosynthesis/export protein J4N41_20460 PF13807 G-rich domain on putative tyrosine kinase J4N41_20460 PF13614 AAA domain J4N41_20460 PF02706 Chain length determinant protein J4N41_20485 PF00578 AhpC/TSA family J4N41_20490 PF02683 Cytochrome C biogenesis protein transmembrane region J4N41_20490 PF11412 Disulphide bond corrector protein DsbC J4N41_20500 PF00583 Acetyltransferase (GNAT) family J4N41_20505 PF01810 LysE type translocator J4N41_20525 PF01557 Fumarylacetoacetate (FAA) hydrolase family J4N41_20535 PF00012 Hsp70 protein J4N41_20540 PF03466 LysR substrate binding domain J4N41_20540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_20550 PF13378 Enolase C-terminal domain-like J4N41_20550 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J4N41_20560 PF00563 EAL domain J4N41_20560 PF00990 Diguanylate cyclase, GGDEF domain J4N41_20565 PF13458 Periplasmic binding protein J4N41_20570 PF00990 Diguanylate cyclase, GGDEF domain J4N41_20570 PF17151 Periplasmic sensor domain J4N41_20580 PF02225 PA domain J4N41_20580 PF04389 Peptidase family M28 J4N41_20585 PF00128 Alpha amylase, catalytic domain J4N41_20585 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J4N41_20585 PF17999 Pullulanase N1-terminal domain J4N41_20600 PF01810 LysE type translocator J4N41_20605 PF04397 LytTr DNA-binding domain J4N41_20605 PF00072 Response regulator receiver domain J4N41_20610 PF06580 Histidine kinase J4N41_20610 PF07694 5TMR of 5TMR-LYT J4N41_20610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_20625 PF12704 MacB-like periplasmic core domain J4N41_20625 PF02687 FtsX-like permease family J4N41_20630 PF00005 ABC transporter J4N41_20645 PF00171 Aldehyde dehydrogenase family J4N41_20655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_20655 PF03466 LysR substrate binding domain J4N41_20660 PF17151 Periplasmic sensor domain J4N41_20660 PF00990 Diguanylate cyclase, GGDEF domain J4N41_20665 PF02525 Flavodoxin-like fold J4N41_20675 PF03466 LysR substrate binding domain J4N41_20675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_20685 PF12843 Putative quorum-sensing-regulated virulence factor J4N41_20700 PF07943 Penicillin-binding protein 5, C-terminal domain J4N41_20700 PF00768 D-alanyl-D-alanine carboxypeptidase J4N41_20715 PF03889 Alternative ribosome-rescue factor A J4N41_20720 PF00313 'Cold-shock' DNA-binding domain J4N41_20735 PF00042 Globin J4N41_20735 PF00970 Oxidoreductase FAD-binding domain J4N41_20735 PF00175 Oxidoreductase NAD-binding domain J4N41_20740 PF01590 GAF domain J4N41_20740 PF00158 Sigma-54 interaction domain J4N41_20755 PF02525 Flavodoxin-like fold J4N41_20760 PF00999 Sodium/hydrogen exchanger family J4N41_20760 PF02254 TrkA-N domain J4N41_20765 PF01554 MatE J4N41_20770 PF00892 EamA-like transporter family J4N41_20775 PF00462 Glutaredoxin J4N41_20790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_20790 PF03466 LysR substrate binding domain J4N41_20795 PF08448 PAS fold J4N41_20795 PF08447 PAS fold J4N41_20795 PF00563 EAL domain J4N41_20795 PF00990 Diguanylate cyclase, GGDEF domain J4N41_20810 PF02540 NAD synthase J4N41_20815 PF00196 Bacterial regulatory proteins, luxR family J4N41_20830 PF01571 Aminomethyltransferase folate-binding domain J4N41_20830 PF08669 Glycine cleavage T-protein C-terminal barrel domain J4N41_20840 PF00464 Serine hydroxymethyltransferase J4N41_20845 PF01597 Glycine cleavage H-protein J4N41_20850 PF02347 Glycine cleavage system P-protein J4N41_20880 PF00664 ABC transporter transmembrane region J4N41_20880 PF00005 ABC transporter J4N41_20885 PF00582 Universal stress protein family J4N41_20895 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J4N41_20895 PF00361 Proton-conducting membrane transporter J4N41_20895 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter J4N41_20895 PF13244 Domain of unknown function (DUF4040) J4N41_20900 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L J4N41_20905 PF00361 Proton-conducting membrane transporter J4N41_20910 PF01899 Na+/H+ ion antiporter subunit J4N41_20915 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) J4N41_20920 PF03334 Na+/H+ antiporter subunit J4N41_20945 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J4N41_20945 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J4N41_20950 PF01810 LysE type translocator J4N41_20960 PF05995 Cysteine dioxygenase type I J4N41_20965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N41_20965 PF12729 Four helix bundle sensory module for signal transduction J4N41_20965 PF00672 HAMP domain J4N41_20970 PF17200 Single Cache domain 2 J4N41_20970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N41_20970 PF00672 HAMP domain J4N41_20980 PF02264 LamB porin J4N41_20985 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J4N41_20985 PF00128 Alpha amylase, catalytic domain J4N41_20995 PF17945 Beta/Gamma crystallin J4N41_20995 PF12561 ToxR activated gene A lipoprotein domain J4N41_21010 PF03808 Glycosyl transferase WecB/TagA/CpsF family J4N41_21020 PF13579 Glycosyl transferase 4-like domain J4N41_21020 PF00534 Glycosyl transferases group 1 J4N41_21030 PF00132 Bacterial transferase hexapeptide (six repeats) J4N41_21045 PF13439 Glycosyltransferase Family 4 J4N41_21045 PF00534 Glycosyl transferases group 1 J4N41_21050 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J4N41_21050 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J4N41_21050 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J4N41_21055 PF02350 UDP-N-acetylglucosamine 2-epimerase J4N41_21060 PF01451 Low molecular weight phosphotyrosine protein phosphatase J4N41_21065 PF03605 Anaerobic c4-dicarboxylate membrane transporter J4N41_21075 PF00248 Aldo/keto reductase family J4N41_21085 PF00128 Alpha amylase, catalytic domain J4N41_21095 PF00793 DAHP synthetase I family J4N41_21100 PF00005 ABC transporter J4N41_21105 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_21110 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N41_21115 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_21120 PF01040 UbiA prenyltransferase family J4N41_21125 PF02628 Cytochrome oxidase assembly protein J4N41_21145 PF00510 Cytochrome c oxidase subunit III J4N41_21150 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 J4N41_21155 PF00115 Cytochrome C and Quinol oxidase polypeptide I J4N41_21160 PF00116 Cytochrome C oxidase subunit II, periplasmic domain J4N41_21160 PF02790 Cytochrome C oxidase subunit II, transmembrane domain J4N41_21165 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J4N41_21165 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J4N41_21165 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J4N41_21165 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J4N41_21170 PF00892 EamA-like transporter family J4N41_21180 PF03618 Kinase/pyrophosphorylase J4N41_21185 PF00391 PEP-utilising enzyme, mobile domain J4N41_21185 PF02896 PEP-utilising enzyme, TIM barrel domain J4N41_21185 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain J4N41_21190 PF07670 Nucleoside recognition J4N41_21200 PF00175 Oxidoreductase NAD-binding domain J4N41_21200 PF00970 Oxidoreductase FAD-binding domain J4N41_21225 PF00873 AcrB/AcrD/AcrF family J4N41_21240 PF05726 Pirin C-terminal cupin domain J4N41_21240 PF02678 Pirin J4N41_21245 PF00561 alpha/beta hydrolase fold J4N41_21285 PF00512 His Kinase A (phospho-acceptor) domain J4N41_21285 PF00672 HAMP domain J4N41_21285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_21290 PF00072 Response regulator receiver domain J4N41_21290 PF00486 Transcriptional regulatory protein, C terminal J4N41_21295 PF00472 RF-1 domain J4N41_21315 PF01979 Amidohydrolase family J4N41_21320 PF00132 Bacterial transferase hexapeptide (six repeats) J4N41_21325 PF02492 CobW/HypB/UreG, nucleotide-binding domain J4N41_21325 PF07683 Cobalamin synthesis protein cobW C-terminal domain J4N41_21330 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family J4N41_21340 PF00701 Dihydrodipicolinate synthetase family J4N41_21345 PF02423 Ornithine cyclodeaminase/mu-crystallin family J4N41_21350 PF01266 FAD dependent oxidoreductase J4N41_21355 PF05544 Proline racemase J4N41_21360 PF00171 Aldehyde dehydrogenase family J4N41_21365 PF00392 Bacterial regulatory proteins, gntR family J4N41_21365 PF07729 FCD domain J4N41_21375 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N41_21380 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_21385 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N41_21385 PF00528 Binding-protein-dependent transport system inner membrane component J4N41_21390 PF00005 ABC transporter J4N41_21390 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N41_21395 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N41_21395 PF00005 ABC transporter J4N41_21400 PF00557 Metallopeptidase family M24 J4N41_21400 PF05195 Aminopeptidase P, N-terminal domain J4N41_21420 PF08453 Peptidase family M9 N-terminal J4N41_21420 PF01752 Collagenase J4N41_21420 PF04151 Bacterial pre-peptidase C-terminal domain J4N41_21430 PF03372 Endonuclease/Exonuclease/phosphatase family J4N41_21435 PF13006 Insertion element 4 transposase N-terminal J4N41_21435 PF01609 Transposase DDE domain J4N41_21440 PF01752 Collagenase J4N41_21440 PF08453 Peptidase family M9 N-terminal J4N41_21445 PF00270 DEAD/DEAH box helicase J4N41_21445 PF00271 Helicase conserved C-terminal domain J4N41_21455 PF17969 L,D-transpeptidase C-terminal domain J4N41_21455 PF01476 LysM domain J4N41_21455 PF03734 L,D-transpeptidase catalytic domain J4N41_21460 PF00875 DNA photolyase J4N41_21460 PF03441 FAD binding domain of DNA photolyase J4N41_21465 PF13411 MerR HTH family regulatory protein J4N41_21470 PF08349 Protein of unknown function (DUF1722) J4N41_21475 PF01048 Phosphorylase superfamily J4N41_21490 PF00990 Diguanylate cyclase, GGDEF domain J4N41_21500 PF11742 Protein of unknown function (DUF3302) J4N41_21505 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N41_21505 PF00529 HlyD membrane-fusion protein of T1SS J4N41_21510 PF03616 Sodium/glutamate symporter J4N41_21525 PF00664 ABC transporter transmembrane region J4N41_21525 PF00005 ABC transporter J4N41_21535 PF01037 Lrp/AsnC ligand binding domain J4N41_21545 PF01609 Transposase DDE domain J4N41_21545 PF13006 Insertion element 4 transposase N-terminal J4N41_21550 PF00474 Sodium:solute symporter family J4N41_21560 PF14850 DNA-binding domain of Proline dehydrogenase J4N41_21560 PF18327 Proline utilization A proline dehydrogenase N-terminal domain J4N41_21560 PF00171 Aldehyde dehydrogenase family J4N41_21560 PF01619 Proline dehydrogenase J4N41_21565 PF12833 Helix-turn-helix domain J4N41_21575 PF03781 Sulfatase-modifying factor enzyme 1 J4N41_21585 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region J4N41_21585 PF01243 Pyridoxamine 5'-phosphate oxidase J4N41_21590 PF00529 HlyD membrane-fusion protein of T1SS J4N41_21605 PF00005 ABC transporter J4N41_21605 PF03412 Peptidase C39 family J4N41_21605 PF00664 ABC transporter transmembrane region J4N41_21610 PF08329 Chitinase A, N-terminal domain J4N41_21610 PF00704 Glycosyl hydrolases family 18 J4N41_21615 PF01212 Beta-eliminating lyase J4N41_21620 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) J4N41_21625 PF01966 HD domain J4N41_21630 PF13302 Acetyltransferase (GNAT) domain J4N41_21640 PF02630 SCO1/SenC J4N41_21650 PF03466 LysR substrate binding domain J4N41_21650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_21655 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 J4N41_21660 PF01906 Putative heavy-metal-binding J4N41_21665 PF03466 LysR substrate binding domain J4N41_21665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_21670 PF07690 Major Facilitator Superfamily J4N41_21675 PF08220 DeoR-like helix-turn-helix domain J4N41_21675 PF00455 DeoR C terminal sensor domain J4N41_21680 PF03009 Glycerophosphoryl diester phosphodiesterase family J4N41_21685 PF03480 Bacterial extracellular solute-binding protein, family 7 J4N41_21695 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J4N41_21720 PF03306 Alpha-acetolactate decarboxylase J4N41_21725 PF07690 Major Facilitator Superfamily J4N41_21730 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J4N41_21730 PF00205 Thiamine pyrophosphate enzyme, central domain J4N41_21730 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J4N41_21885 PF00158 Sigma-54 interaction domain J4N41_21885 PF02954 Bacterial regulatory protein, Fis family J4N41_21885 PF13185 GAF domain J4N41_21890 PF00375 Sodium:dicarboxylate symporter family J4N41_21895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N41_21895 PF00672 HAMP domain J4N41_21895 PF02743 Cache domain J4N41_21905 PF04115 Ureidoglycolate lyase J4N41_21910 PF03561 Allantoicase repeat J4N41_21915 PF01014 Uricase J4N41_21915 PF09349 OHCU decarboxylase J4N41_21925 PF00576 HIUase/Transthyretin family J4N41_21930 PF00860 Permease family J4N41_21935 PF00860 Permease family J4N41_21940 PF01979 Amidohydrolase family J4N41_21945 PF06224 Winged helix DNA-binding domain J4N41_21950 PF03928 Haem-degrading J4N41_21955 PF00486 Transcriptional regulatory protein, C terminal J4N41_21955 PF00072 Response regulator receiver domain J4N41_21960 PF07689 KaiB domain J4N41_21960 PF00512 His Kinase A (phospho-acceptor) domain J4N41_21960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N41_21965 PF00753 Metallo-beta-lactamase superfamily J4N41_22010 PF01040 UbiA prenyltransferase family J4N41_22020 PF00510 Cytochrome c oxidase subunit III J4N41_22025 PF00115 Cytochrome C and Quinol oxidase polypeptide I J4N41_22030 PF00116 Cytochrome C oxidase subunit II, periplasmic domain J4N41_22030 PF06481 COX Aromatic Rich Motif J4N41_22035 PF10282 Lactonase, 7-bladed beta-propeller J4N41_22055 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N41_22060 PF00672 HAMP domain J4N41_22060 PF02743 Cache domain J4N41_22060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N41_22065 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N41_22070 PF00118 TCP-1/cpn60 chaperonin family J4N41_22075 PF00166 Chaperonin 10 Kd subunit J4N41_22080 PF00011 Hsp20/alpha crystallin family J4N41_22085 PF01594 AI-2E family transporter J4N41_22120 PF00924 Mechanosensitive ion channel J4N41_22125 PF00781 Diacylglycerol kinase catalytic domain J4N41_22125 PF02142 MGS-like domain J4N41_22150 PF01590 GAF domain J4N41_22150 PF00158 Sigma-54 interaction domain J4N41_22150 PF02954 Bacterial regulatory protein, Fis family J4N41_22155 PF08448 PAS fold J4N41_22155 PF00563 EAL domain J4N41_22155 PF00990 Diguanylate cyclase, GGDEF domain J4N41_22160 PF13581 Histidine kinase-like ATPase domain J4N41_22175 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J4N41_22175 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J4N41_22180 PF01261 Xylose isomerase-like TIM barrel J4N41_22185 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J4N41_22185 PF00205 Thiamine pyrophosphate enzyme, central domain J4N41_22185 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J4N41_22190 PF01274 Malate synthase J4N41_22200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N41_22200 PF03466 LysR substrate binding domain J4N41_22205 PF03606 C4-dicarboxylate anaerobic carrier J4N41_22210 PF02129 X-Pro dipeptidyl-peptidase (S15 family) J4N41_22210 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain J4N41_22215 PF01047 MarR family J4N41_22220 PF00892 EamA-like transporter family J4N41_22240 PF03610 PTS system fructose IIA component J4N41_22240 PF03830 PTS system sorbose subfamily IIB component J4N41_22245 PF01709 Transcriptional regulator J4N41_22275 PF13614 AAA domain J4N41_22385 PF00563 EAL domain J4N41_22385 PF12792 CSS motif domain associated with EAL J4N41_22410 PF00816 H-NS histone family J4N41_22425 PF04994 TfoX C-terminal domain J4N41_22425 PF04993 TfoX N-terminal domain J4N41_22520 PF16925 Tetracyclin repressor-like, C-terminal domain J4N41_22520 PF00440 Bacterial regulatory proteins, tetR family J4N41_22525 PF00884 Sulfatase J4N41_22530 PF13737 Transposase DDE domain J4N41_22540 PF13737 Transposase DDE domain J4N41_22560 PF13737 Transposase DDE domain J4N41_22580 PF01797 Transposase IS200 like J4N41_22590 PF00171 Aldehyde dehydrogenase family J4N41_22605 PF13737 Transposase DDE domain J4N41_22910 PF02195 ParB-like nuclease domain J4N41_22910 PF17762 HTH domain found in ParB protein J4N41_22950 PF10411 Disulfide bond isomerase protein N-terminus J4N41_22950 PF13098 Thioredoxin-like domain J4N41_22955 PF08272 Topoisomerase I zinc-ribbon-like J4N41_22955 PF01131 DNA topoisomerase J4N41_22955 PF01751 Toprim domain J4N41_22955 PF01396 Topoisomerase DNA binding C4 zinc finger J4N41_23020 PF00437 Type II/IV secretion system protein J4N41_23045 PF00437 Type II/IV secretion system protein J4N41_23135 PF05872 Bacterial protein of unknown function (DUF853) J4N41_23145 PF01131 DNA topoisomerase J4N41_23145 PF01751 Toprim domain J4N41_23145 PF13342 C-terminal repeat of topoisomerase J4N41_23145 PF01396 Topoisomerase DNA binding C4 zinc finger J4N41_23150 PF00580 UvrD/REP helicase N-terminal domain J4N41_23150 PF13361 UvrD-like helicase C-terminal domain