locus-tag class description J4N45_00005 PF00308 Bacterial dnaA protein J4N45_00005 PF08299 Bacterial dnaA protein helix-turn-helix J4N45_00005 PF11638 DnaA N-terminal domain J4N45_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain J4N45_00010 PF02767 DNA polymerase III beta subunit, central domain J4N45_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain J4N45_00015 PF02463 RecF/RecN/SMC N terminal domain J4N45_00020 PF00204 DNA gyrase B J4N45_00020 PF00986 DNA gyrase B subunit, carboxyl terminus J4N45_00020 PF18053 DNA gyrase B subunit insert domain J4N45_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_00020 PF01751 Toprim domain J4N45_00025 PF00011 Hsp20/alpha crystallin family J4N45_00030 PF00155 Aminotransferase class I and II J4N45_00035 PF00128 Alpha amylase, catalytic domain J4N45_00040 PF02092 Glycyl-tRNA synthetase beta subunit J4N45_00040 PF05746 DALR anticodon binding domain J4N45_00045 PF02091 Glycyl-tRNA synthetase alpha subunit J4N45_00050 PF01169 Uncharacterized protein family UPF0016 J4N45_00060 PF01206 Sulfurtransferase TusA J4N45_00065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_00065 PF03466 LysR substrate binding domain J4N45_00070 PF00034 Cytochrome c J4N45_00075 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J4N45_00080 PF08240 Alcohol dehydrogenase GroES-like domain J4N45_00080 PF00107 Zinc-binding dehydrogenase J4N45_00085 PF02803 Thiolase, C-terminal domain J4N45_00085 PF00108 Thiolase, N-terminal domain J4N45_00090 PF00378 Enoyl-CoA hydratase/isomerase J4N45_00090 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J4N45_00090 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J4N45_00095 PF09186 Domain of unknown function (DUF1949) J4N45_00095 PF01205 Uncharacterized protein family UPF0029 J4N45_00100 PF02386 Cation transport protein J4N45_00105 PF12724 Flavodoxin domain J4N45_00150 PF13091 PLD-like domain J4N45_00155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_00155 PF03466 LysR substrate binding domain J4N45_00160 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain J4N45_00160 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain J4N45_00165 PF04380 Membrane fusogenic activity J4N45_00170 PF00873 AcrB/AcrD/AcrF family J4N45_00175 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N45_00180 PF16295 Tetracyclin repressor-like, C-terminal domain J4N45_00180 PF00440 Bacterial regulatory proteins, tetR family J4N45_00185 PF13361 UvrD-like helicase C-terminal domain J4N45_00185 PF00580 UvrD/REP helicase N-terminal domain J4N45_00190 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J4N45_00220 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N45_00220 PF00005 ABC transporter J4N45_00225 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N45_00230 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_00235 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_00235 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N45_00250 PF06483 Chitinase C J4N45_00250 PF00704 Glycosyl hydrolases family 18 J4N45_00255 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4N45_00255 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N45_00265 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ J4N45_00270 PF01432 Peptidase family M3 J4N45_00275 PF00690 Cation transporter/ATPase, N-terminus J4N45_00275 PF00689 Cation transporting ATPase, C-terminus J4N45_00280 PF01037 Lrp/AsnC ligand binding domain J4N45_00285 PF04445 Putative SAM-dependent methyltransferase J4N45_00295 PF00892 EamA-like transporter family J4N45_00300 PF00582 Universal stress protein family J4N45_00305 PF00210 Ferritin-like domain J4N45_00310 PF10625 Universal stress protein B (UspB) J4N45_00320 PF00248 Aldo/keto reductase family J4N45_00325 PF02056 Family 4 glycosyl hydrolase J4N45_00325 PF11975 Family 4 glycosyl hydrolase C-terminal domain J4N45_00330 PF00392 Bacterial regulatory proteins, gntR family J4N45_00330 PF07702 UTRA domain J4N45_00335 PF00367 phosphotransferase system, EIIB J4N45_00335 PF02378 Phosphotransferase system, EIIC J4N45_00350 PF01476 LysM domain J4N45_00350 PF01464 Transglycosylase SLT domain J4N45_00370 PF00460 Flagella basal body rod protein J4N45_00375 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N45_00375 PF00460 Flagella basal body rod protein J4N45_00380 PF13861 FlgD Tudor-like domain J4N45_00380 PF13860 FlgD Ig-like domain J4N45_00380 PF03963 Flagellar hook capping protein - N-terminal region J4N45_00385 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N45_00385 PF00460 Flagella basal body rod protein J4N45_00385 PF07559 Flagellar basal body protein FlaE J4N45_00390 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N45_00390 PF00460 Flagella basal body rod protein J4N45_00395 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N45_00395 PF00460 Flagella basal body rod protein J4N45_00400 PF02107 Flagellar L-ring protein J4N45_00405 PF02119 Flagellar P-ring protein J4N45_00410 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase J4N45_00410 PF10135 Rod binding protein J4N45_00415 PF00460 Flagella basal body rod protein J4N45_00415 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N45_00420 PF00700 Bacterial flagellin C-terminal helical region J4N45_00420 PF00669 Bacterial flagellin N-terminal helical region J4N45_00445 PF13677 Membrane MotB of proton-channel complex MotA/MotB J4N45_00445 PF00691 OmpA family J4N45_00450 PF01618 MotA/TolQ/ExbB proton channel family J4N45_00455 PF04542 Sigma-70 region 2 J4N45_00455 PF04545 Sigma-70, region 4 J4N45_00460 PF03748 Flagellar basal body-associated protein FliL J4N45_00475 PF02561 Flagellar protein FliS J4N45_00480 PF07196 Flagellin hook IN motif J4N45_00480 PF07195 Flagellar hook-associated protein 2 C-terminus J4N45_00480 PF02465 Flagellar hook-associated protein 2 N-terminus J4N45_00485 PF00700 Bacterial flagellin C-terminal helical region J4N45_00485 PF00669 Bacterial flagellin N-terminal helical region J4N45_00495 PF00771 FHIPEP family J4N45_00500 PF01312 FlhB HrpN YscU SpaS Family J4N45_00505 PF01311 Bacterial export proteins, family 1 J4N45_00510 PF01313 Bacterial export proteins, family 3 J4N45_00515 PF00813 FliP family J4N45_00520 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J4N45_00535 PF00158 Sigma-54 interaction domain J4N45_00535 PF00072 Response regulator receiver domain J4N45_00535 PF02954 Bacterial regulatory protein, Fis family J4N45_00540 PF02049 Flagellar hook-basal body complex protein FliE J4N45_00545 PF01514 Secretory protein of YscJ/FliF family J4N45_00545 PF08345 Flagellar M-ring protein C-terminal J4N45_00550 PF01706 FliG C-terminal domain J4N45_00550 PF14841 FliG middle domain J4N45_00550 PF14842 FliG N-terminal domain J4N45_00560 PF18269 T3SS EscN ATPase C-terminal domain J4N45_00560 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N45_00570 PF02646 RmuC family J4N45_00575 PF01209 ubiE/COQ5 methyltransferase family J4N45_00580 PF02036 SCP-2 sterol transfer family J4N45_00585 PF03109 ABC1 family J4N45_00590 PF02416 mttA/Hcf106 family J4N45_00595 PF02416 mttA/Hcf106 family J4N45_00600 PF00902 Sec-independent protein translocase protein (TatC) J4N45_00605 PF01026 TatD related DNase J4N45_00610 PF00490 Delta-aminolevulinic acid dehydratase J4N45_00615 PF01612 3'-5' exonuclease J4N45_00615 PF00476 DNA polymerase family A J4N45_00615 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J4N45_00615 PF01367 5'-3' exonuclease, C-terminal SAM fold J4N45_00620 PF01926 50S ribosome-binding GTPase J4N45_00625 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J4N45_00640 PF01554 MatE J4N45_00645 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4N45_00645 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N45_00650 PF00440 Bacterial regulatory proteins, tetR family J4N45_00660 PF05958 tRNA (Uracil-5-)-methyltransferase J4N45_00665 PF00593 TonB dependent receptor J4N45_00665 PF07715 TonB-dependent Receptor Plug Domain J4N45_00675 PF01177 Asp/Glu/Hydantoin racemase J4N45_00775 PF03631 Virulence factor BrkB J4N45_00780 PF02580 D-Tyr-tRNA(Tyr) deacylase J4N45_00785 PF09500 Putative thioesterase (yiiD_Cterm) J4N45_00785 PF00583 Acetyltransferase (GNAT) family J4N45_00795 PF01293 Phosphoenolpyruvate carboxykinase J4N45_00800 PF01430 Hsp33 protein J4N45_00805 PF01479 S4 domain J4N45_00810 PF11356 Type II secretion system protein C J4N45_00815 PF00263 Bacterial type II and III secretion system protein J4N45_00815 PF03958 Bacterial type II/III secretion system short domain J4N45_00820 PF00437 Type II/IV secretion system protein J4N45_00825 PF00482 Type II secretion system (T2SS), protein F J4N45_00830 PF07963 Prokaryotic N-terminal methylation motif J4N45_00830 PF08334 Type II secretion system (T2SS), protein G J4N45_00835 PF12019 Type II transport protein GspH J4N45_00840 PF02501 Type II secretion system (T2SS), protein I J4N45_00840 PF07963 Prokaryotic N-terminal methylation motif J4N45_00845 PF07963 Prokaryotic N-terminal methylation motif J4N45_00845 PF11612 Type II secretion system (T2SS), protein J J4N45_00850 PF03934 Type II secretion system (T2SS), protein K J4N45_00855 PF05134 Type II secretion system (T2SS), protein L J4N45_00855 PF12693 GspL periplasmic domain J4N45_00860 PF04612 Type II secretion system (T2SS), protein M J4N45_00865 PF01203 Type II secretion system (T2SS), protein N J4N45_00870 PF00459 Inositol monophosphatase family J4N45_00875 PF00293 NUDIX domain J4N45_00880 PF01106 NifU-like domain J4N45_00880 PF01521 Iron-sulphur cluster biosynthesis J4N45_00890 PF00561 alpha/beta hydrolase fold J4N45_00900 PF16921 Tex protein YqgF-like domain J4N45_00900 PF09371 Tex-like protein N-terminal domain J4N45_00900 PF00575 S1 RNA binding domain J4N45_00900 PF17674 HHH domain J4N45_00910 PF00571 CBS domain J4N45_00910 PF01595 Cyclin M transmembrane N-terminal domain J4N45_00915 PF00216 Bacterial DNA-binding protein J4N45_00925 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain J4N45_00925 PF02843 Phosphoribosylglycinamide synthetase, C domain J4N45_00925 PF02844 Phosphoribosylglycinamide synthetase, N domain J4N45_00930 PF01808 AICARFT/IMPCHase bienzyme J4N45_00930 PF02142 MGS-like domain J4N45_00935 PF13411 MerR HTH family regulatory protein J4N45_00940 PF00672 HAMP domain J4N45_00940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N45_00940 PF17200 Single Cache domain 2 J4N45_00945 PF02954 Bacterial regulatory protein, Fis family J4N45_00950 PF01207 Dihydrouridine synthase (Dus) J4N45_00960 PF02785 Biotin carboxylase C-terminal domain J4N45_00960 PF00289 Biotin carboxylase, N-terminal domain J4N45_00960 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J4N45_00965 PF00364 Biotin-requiring enzyme J4N45_00970 PF01220 Dehydroquinase class II J4N45_00975 PF16177 Acetyl-coenzyme A synthetase N-terminus J4N45_00975 PF13193 AMP-binding enzyme C-terminal domain J4N45_00975 PF00501 AMP-binding enzyme J4N45_00990 PF12832 MFS_1 like family J4N45_00995 PF00072 Response regulator receiver domain J4N45_00995 PF01627 Hpt domain J4N45_00995 PF00512 His Kinase A (phospho-acceptor) domain J4N45_00995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_00995 PF00672 HAMP domain J4N45_01005 PF00474 Sodium:solute symporter family J4N45_01015 PF01914 MarC family integral membrane protein J4N45_01020 PF00196 Bacterial regulatory proteins, luxR family J4N45_01020 PF00072 Response regulator receiver domain J4N45_01025 PF11412 Disulphide bond corrector protein DsbC J4N45_01025 PF02683 Cytochrome C biogenesis protein transmembrane region J4N45_01030 PF03605 Anaerobic c4-dicarboxylate membrane transporter J4N45_01035 PF10415 Fumarase C C-terminus J4N45_01035 PF00206 Lyase J4N45_01040 PF04186 FxsA cytoplasmic membrane protein J4N45_01050 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain J4N45_01050 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain J4N45_01050 PF06827 Zinc finger found in FPG and IleRS J4N45_01055 PF03279 Bacterial lipid A biosynthesis acyltransferase J4N45_01060 PF03279 Bacterial lipid A biosynthesis acyltransferase J4N45_01065 PF00440 Bacterial regulatory proteins, tetR family J4N45_01070 PF04127 DNA / pantothenate metabolism flavoprotein J4N45_01070 PF02441 Flavoprotein J4N45_01075 PF04002 RadC-like JAB domain J4N45_01080 PF00830 Ribosomal L28 family J4N45_01085 PF00471 Ribosomal protein L33 J4N45_01090 PF00588 SpoU rRNA Methylase family J4N45_01095 PF00246 Zinc carboxypeptidase J4N45_01095 PF18027 Cytosolic carboxypeptidase N-terminal domain J4N45_01100 PF00512 His Kinase A (phospho-acceptor) domain J4N45_01100 PF16527 Two-component sensor protein CpxA, periplasmic domain J4N45_01100 PF00672 HAMP domain J4N45_01100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_01105 PF00486 Transcriptional regulatory protein, C terminal J4N45_01105 PF00072 Response regulator receiver domain J4N45_01115 PF01545 Cation efflux family J4N45_01115 PF16916 Dimerisation domain of Zinc Transporter J4N45_01120 PF00365 Phosphofructokinase J4N45_01125 PF00121 Triosephosphate isomerase J4N45_01150 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded J4N45_01155 PF06005 Cell division protein ZapB J4N45_01160 PF00440 Bacterial regulatory proteins, tetR family J4N45_01160 PF08360 QacR-like protein, C-terminal region J4N45_01170 PF01551 Peptidase family M23 J4N45_01175 PF01676 Metalloenzyme superfamily J4N45_01175 PF06415 BPG-independent PGAM N-terminus (iPGM_N) J4N45_01180 PF00581 Rhodanese-like domain J4N45_01185 PF02556 Preprotein translocase subunit SecB J4N45_01190 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus J4N45_01190 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus J4N45_01195 PF00132 Bacterial transferase hexapeptide (six repeats) J4N45_01195 PF06426 Serine acetyltransferase, N-terminal J4N45_01200 PF01554 MatE J4N45_01205 PF00166 Chaperonin 10 Kd subunit J4N45_01210 PF00118 TCP-1/cpn60 chaperonin family J4N45_01220 PF02308 MgtC family J4N45_01225 PF04055 Radical SAM superfamily J4N45_01230 PF09285 Elongation factor P, C-terminal J4N45_01230 PF08207 Elongation factor P (EF-P) KOW-like domain J4N45_01230 PF01132 Elongation factor P (EF-P) OB domain J4N45_01245 PF02313 Fumarate reductase subunit D J4N45_01250 PF02300 Fumarate reductase subunit C J4N45_01255 PF13085 2Fe-2S iron-sulfur cluster binding domain J4N45_01255 PF13183 4Fe-4S dicluster domain J4N45_01260 PF00890 FAD binding domain J4N45_01260 PF02910 Fumarate reductase flavoprotein C-term J4N45_01265 PF00152 tRNA synthetases class II (D, K and N) J4N45_01275 PF00939 Sodium:sulfate symporter transmembrane region J4N45_01280 PF02666 Phosphatidylserine decarboxylase J4N45_01285 PF03193 RsgA GTPase J4N45_01290 PF00929 Exonuclease J4N45_01360 PF08331 Domain of unknown function (DUF1730) J4N45_01365 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE J4N45_01370 PF01520 N-acetylmuramoyl-L-alanine amidase J4N45_01375 PF01119 DNA mismatch repair protein, C-terminal domain J4N45_01375 PF08676 MutL C terminal dimerisation domain J4N45_01385 PF17209 Hfq protein J4N45_01390 PF16360 GTP-binding GTPase Middle Region J4N45_01390 PF13167 GTP-binding GTPase N-terminal J4N45_01390 PF01926 50S ribosome-binding GTPase J4N45_01395 PF01145 SPFH domain / Band 7 family J4N45_01395 PF12221 Bacterial membrane protein N terminal J4N45_01400 PF01145 SPFH domain / Band 7 family J4N45_01405 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) J4N45_01410 PF00709 Adenylosuccinate synthetase J4N45_01415 PF08238 Sel1 repeat J4N45_01420 PF17876 Cold shock domain J4N45_01420 PF08461 Ribonuclease R winged-helix domain J4N45_01420 PF08206 Ribonuclease B OB domain J4N45_01420 PF00773 RNB domain J4N45_01420 PF00575 S1 RNA binding domain J4N45_01425 PF00588 SpoU rRNA Methylase family J4N45_01425 PF08032 RNA 2'-O ribose methyltransferase substrate binding J4N45_01430 PF04102 SlyX J4N45_01440 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N45_01440 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J4N45_01445 PF13309 HTH domain J4N45_01445 PF08348 YheO-like PAS domain J4N45_01450 PF02635 DsrE/DsrF-like family J4N45_01455 PF02635 DsrE/DsrF-like family J4N45_01465 PF00164 Ribosomal protein S12/S23 J4N45_01470 PF00177 Ribosomal protein S7p/S5e J4N45_01475 PF03764 Elongation factor G, domain IV J4N45_01475 PF14492 Elongation Factor G, domain II J4N45_01475 PF00679 Elongation factor G C-terminus J4N45_01475 PF00009 Elongation factor Tu GTP binding domain J4N45_01475 PF03144 Elongation factor Tu domain 2 J4N45_01480 PF03143 Elongation factor Tu C-terminal domain J4N45_01480 PF00009 Elongation factor Tu GTP binding domain J4N45_01480 PF03144 Elongation factor Tu domain 2 J4N45_01485 PF04324 BFD-like [2Fe-2S] binding domain J4N45_01490 PF00210 Ferritin-like domain J4N45_01495 PF00338 Ribosomal protein S10p/S20e J4N45_01500 PF00297 Ribosomal protein L3 J4N45_01505 PF00573 Ribosomal protein L4/L1 family J4N45_01510 PF00276 Ribosomal protein L23 J4N45_01515 PF00181 Ribosomal Proteins L2, RNA binding domain J4N45_01515 PF03947 Ribosomal Proteins L2, C-terminal domain J4N45_01520 PF00203 Ribosomal protein S19 J4N45_01525 PF00237 Ribosomal protein L22p/L17e J4N45_01530 PF00189 Ribosomal protein S3, C-terminal domain J4N45_01530 PF07650 KH domain J4N45_01535 PF00252 Ribosomal protein L16p/L10e J4N45_01540 PF00831 Ribosomal L29 protein J4N45_01545 PF00366 Ribosomal protein S17 J4N45_01550 PF00238 Ribosomal protein L14p/L23e J4N45_01555 PF00467 KOW motif J4N45_01555 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 J4N45_01560 PF00673 ribosomal L5P family C-terminus J4N45_01560 PF00281 Ribosomal protein L5 J4N45_01565 PF00253 Ribosomal protein S14p/S29e J4N45_01570 PF00410 Ribosomal protein S8 J4N45_01575 PF00347 Ribosomal protein L6 J4N45_01580 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast J4N45_01585 PF03719 Ribosomal protein S5, C-terminal domain J4N45_01585 PF00333 Ribosomal protein S5, N-terminal domain J4N45_01590 PF00327 Ribosomal protein L30p/L7e J4N45_01595 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A J4N45_01600 PF00344 SecY translocase J4N45_01605 PF00444 Ribosomal protein L36 J4N45_01610 PF00416 Ribosomal protein S13/S18 J4N45_01615 PF00411 Ribosomal protein S11 J4N45_01620 PF00163 Ribosomal protein S4/S9 N-terminal domain J4N45_01620 PF01479 S4 domain J4N45_01625 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain J4N45_01625 PF01000 RNA polymerase Rpb3/RpoA insert domain J4N45_01625 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain J4N45_01630 PF01196 Ribosomal protein L17 J4N45_01640 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N45_01640 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J4N45_01650 PF13673 Acetyltransferase (GNAT) domain J4N45_01655 PF00149 Calcineurin-like phosphoesterase J4N45_01655 PF02872 5'-nucleotidase, C-terminal domain J4N45_01660 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N45_01660 PF14824 Sirohaem biosynthesis protein central J4N45_01660 PF10414 Sirohaem synthase dimerisation region J4N45_01665 PF01507 Phosphoadenosine phosphosulfate reductase family J4N45_01670 PF00009 Elongation factor Tu GTP binding domain J4N45_01675 PF02080 TrkA-C domain J4N45_01675 PF03600 Citrate transporter J4N45_01700 PF00005 ABC transporter J4N45_01710 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) J4N45_01720 PF01625 Peptide methionine sulfoxide reductase J4N45_01725 PF01103 Surface antigen J4N45_01725 PF07244 Surface antigen variable number repeat J4N45_01725 PF17243 POTRA domain TamA domain 1 J4N45_01730 PF04357 TamB, inner membrane protein subunit of TAM complex J4N45_01745 PF00719 Inorganic pyrophosphatase J4N45_01750 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain J4N45_01755 PF01225 Mur ligase family, catalytic domain J4N45_01755 PF02875 Mur ligase family, glutamate ligase domain J4N45_01755 PF08245 Mur ligase middle domain J4N45_01760 PF02441 Flavoprotein J4N45_01770 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_01775 PF00005 ABC transporter J4N45_01780 PF04751 Protein of unknown function (DUF615) J4N45_01785 PF01523 Putative modulator of DNA gyrase J4N45_01795 PF01475 Ferric uptake regulator family J4N45_01835 PF05840 Bacteriophage replication gene A protein (GPA) J4N45_01915 PF01207 Dihydrouridine synthase (Dus) J4N45_01930 PF00258 Flavodoxin J4N45_01930 PF00175 Oxidoreductase NAD-binding domain J4N45_01930 PF00667 FAD binding domain J4N45_01935 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J4N45_01935 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain J4N45_01940 PF01507 Phosphoadenosine phosphosulfate reductase family J4N45_01990 PF00672 HAMP domain J4N45_01990 PF17200 Single Cache domain 2 J4N45_01990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N45_02020 PF00437 Type II/IV secretion system protein J4N45_02025 PF00437 Type II/IV secretion system protein J4N45_02030 PF01168 Alanine racemase, N-terminal domain J4N45_02035 PF03807 NADP oxidoreductase coenzyme F420-dependent J4N45_02035 PF14748 Pyrroline-5-carboxylate reductase dimerisation J4N45_02040 PF02325 YGGT family J4N45_02045 PF02594 Uncharacterised ACR, YggU family COG1872 J4N45_02055 PF01725 Ham1 family J4N45_02060 PF06969 HemN C-terminal domain J4N45_02060 PF04055 Radical SAM superfamily J4N45_02065 PF04960 Glutaminase J4N45_02070 PF02390 Putative methyltransferase J4N45_02075 PF10576 Iron-sulfur binding domain of endonuclease III J4N45_02075 PF00633 Helix-hairpin-helix motif J4N45_02075 PF00730 HhH-GPD superfamily base excision DNA repair protein J4N45_02075 PF14815 NUDIX domain J4N45_02080 PF04362 Bacterial Fe(2+) trafficking J4N45_02085 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain J4N45_02085 PF01464 Transglycosylase SLT domain J4N45_02110 PF00999 Sodium/hydrogen exchanger family J4N45_02115 PF00809 Pterin binding enzyme J4N45_02115 PF02310 B12 binding domain J4N45_02115 PF02574 Homocysteine S-methyltransferase J4N45_02115 PF02607 B12 binding domain J4N45_02115 PF02965 Vitamin B12 dependent methionine synthase, activation domain J4N45_02120 PF01595 Cyclin M transmembrane N-terminal domain J4N45_02120 PF03471 Transporter associated domain J4N45_02120 PF00571 CBS domain J4N45_02125 PF01578 Cytochrome C assembly protein J4N45_02130 PF02881 SRP54-type protein, helical bundle domain J4N45_02130 PF00448 SRP54-type protein, GTPase domain J4N45_02130 PF02978 Signal peptide binding domain J4N45_02135 PF00886 Ribosomal protein S16 J4N45_02140 PF01782 RimM N-terminal domain J4N45_02140 PF05239 PRC-barrel domain J4N45_02145 PF01746 tRNA (Guanine-1)-methyltransferase J4N45_02150 PF01245 Ribosomal protein L19 J4N45_02155 PF03884 DNA gyrase inhibitor YacG J4N45_02160 PF07072 Cell division protein J4N45_02165 PF01121 Dephospho-CoA kinase J4N45_02170 PF06750 Bacterial Peptidase A24 N-terminal domain J4N45_02170 PF01478 Type IV leader peptidase family J4N45_02175 PF00482 Type II secretion system (T2SS), protein F J4N45_02180 PF00437 Type II/IV secretion system protein J4N45_02180 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J4N45_02185 PF07963 Prokaryotic N-terminal methylation motif J4N45_02185 PF00114 Pilin (bacterial filament) J4N45_02190 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain J4N45_02190 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain J4N45_02195 PF01510 N-acetylmuramoyl-L-alanine amidase J4N45_02200 PF07729 FCD domain J4N45_02200 PF00392 Bacterial regulatory proteins, gntR family J4N45_02205 PF17831 Pyruvate dehydrogenase E1 component middle domain J4N45_02205 PF00456 Transketolase, thiamine diphosphate binding domain J4N45_02210 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J4N45_02210 PF00364 Biotin-requiring enzyme J4N45_02210 PF02817 e3 binding domain J4N45_02215 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4N45_02215 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N45_02220 PF00440 Bacterial regulatory proteins, tetR family J4N45_02225 PF00156 Phosphoribosyl transferase domain J4N45_02230 PF00484 Carbonic anhydrase J4N45_02235 PF01740 STAS domain J4N45_02235 PF00916 Sulfate permease family J4N45_02240 PF00005 ABC transporter J4N45_02245 PF01061 ABC-2 type transporter J4N45_02250 PF03710 Glutamate-ammonia ligase adenylyltransferase J4N45_02250 PF08335 GlnD PII-uridylyltransferase J4N45_02255 PF01467 Cytidylyltransferase-like J4N45_02255 PF00294 pfkB family carbohydrate kinase J4N45_02260 PF02321 Outer membrane efflux protein J4N45_02265 PF00293 NUDIX domain J4N45_02270 PF06853 Protein of unknown function (DUF1249) J4N45_02275 PF00149 Calcineurin-like phosphoesterase J4N45_02280 PF05728 Uncharacterised protein family (UPF0227) J4N45_02285 PF01751 Toprim domain J4N45_02285 PF00204 DNA gyrase B J4N45_02285 PF00986 DNA gyrase B subunit, carboxyl terminus J4N45_02285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_02290 PF03989 DNA gyrase C-terminal domain, beta-propeller J4N45_02290 PF00521 DNA gyrase/topoisomerase IV, subunit A J4N45_02295 PF13180 PDZ domain J4N45_02300 PF00595 PDZ domain J4N45_02305 PF06295 Protein of unknown function (DUF1043) J4N45_02310 PF03969 AFG1-like ATPase J4N45_02315 PF00572 Ribosomal protein L13 J4N45_02320 PF00380 Ribosomal protein S9/S16 J4N45_02325 PF00355 Rieske [2Fe-2S] domain J4N45_02325 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal J4N45_02330 PF00033 Cytochrome b/b6/petB J4N45_02330 PF00032 Cytochrome b(C-terminal)/b6/petD J4N45_02335 PF02167 Cytochrome C1 family J4N45_02340 PF00043 Glutathione S-transferase, C-terminal domain J4N45_02340 PF02798 Glutathione S-transferase, N-terminal domain J4N45_02345 PF04386 Stringent starvation protein B J4N45_02355 PF00224 Pyruvate kinase, barrel domain J4N45_02355 PF02887 Pyruvate kinase, alpha/beta domain J4N45_02360 PF13419 Haloacid dehalogenase-like hydrolase J4N45_02365 PF01022 Bacterial regulatory protein, arsR family J4N45_02370 PF01022 Bacterial regulatory protein, arsR family J4N45_02375 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J4N45_02375 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J4N45_02395 PF01758 Sodium Bile acid symporter family J4N45_02400 PF00990 Diguanylate cyclase, GGDEF domain J4N45_02410 PF07715 TonB-dependent Receptor Plug Domain J4N45_02410 PF00593 TonB dependent receptor J4N45_02420 PF04977 Septum formation initiator J4N45_02425 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase J4N45_02430 PF02542 YgbB family J4N45_02435 PF01142 tRNA pseudouridine synthase D (TruD) J4N45_02440 PF01975 Survival protein SurE J4N45_02450 PF01551 Peptidase family M23 J4N45_02450 PF01476 LysM domain J4N45_02455 PF04545 Sigma-70, region 4 J4N45_02455 PF04539 Sigma-70 region 3 J4N45_02455 PF00140 Sigma-70 factor, region 1.2 J4N45_02455 PF04542 Sigma-70 region 2 J4N45_02460 PF08239 Bacterial SH3 domain J4N45_02465 PF01384 Phosphate transporter family J4N45_02470 PF01865 Protein of unknown function DUF47 J4N45_02475 PF01928 CYTH domain J4N45_02480 PF00520 Ion transport protein J4N45_02480 PF00027 Cyclic nucleotide-binding domain J4N45_02485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N45_02485 PF00672 HAMP domain J4N45_02485 PF02743 Cache domain J4N45_02490 PF02569 Pantoate-beta-alanine ligase J4N45_02495 PF02548 Ketopantoate hydroxymethyltransferase J4N45_02500 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J4N45_02505 PF01743 Poly A polymerase head domain J4N45_02505 PF12626 Polymerase A arginine-rich C-terminus J4N45_02505 PF12627 Probable RNA and SrmB- binding site of polymerase A J4N45_02510 PF00749 tRNA synthetases class I (E and Q), catalytic domain J4N45_02515 PF01258 Prokaryotic dksA/traR C4-type zinc finger J4N45_02520 PF03749 Sugar fermentation stimulation protein RE domain J4N45_02520 PF17746 SfsA N-terminal OB domain J4N45_02525 PF00271 Helicase conserved C-terminal domain J4N45_02525 PF00270 DEAD/DEAH box helicase J4N45_02525 PF04408 Helicase associated domain (HA2) J4N45_02525 PF08482 ATP-dependent helicase C-terminal J4N45_02530 PF00912 Transglycosylase J4N45_02530 PF14814 Bifunctional transglycosylase second domain J4N45_02530 PF00905 Penicillin binding protein transpeptidase domain J4N45_02535 PF01734 Patatin-like phospholipase J4N45_02540 PF00330 Aconitase family (aconitate hydratase) J4N45_02540 PF06434 Aconitate hydratase 2 N-terminus J4N45_02540 PF11791 Aconitate B N-terminal domain J4N45_02545 PF00672 HAMP domain J4N45_02545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_02545 PF00072 Response regulator receiver domain J4N45_02545 PF00512 His Kinase A (phospho-acceptor) domain J4N45_02545 PF01627 Hpt domain J4N45_02545 PF17149 Periplasmic sensor domain found in signal transduction proteins J4N45_02550 PF08468 Methyltransferase small domain N-terminal J4N45_02550 PF05175 Methyltransferase small domain J4N45_02555 PF01594 AI-2E family transporter J4N45_02560 PF00202 Aminotransferase class-III J4N45_02565 PF01521 Iron-sulphur cluster biosynthesis J4N45_02575 PF00873 AcrB/AcrD/AcrF family J4N45_02580 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J4N45_02580 PF00205 Thiamine pyrophosphate enzyme, central domain J4N45_02580 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J4N45_02585 PF10369 Small subunit of acetolactate synthase J4N45_02590 PF04972 BON domain J4N45_02595 PF13580 SIS domain J4N45_02600 PF02021 Uncharacterised protein family UPF0102 J4N45_02605 PF04348 LppC putative lipoprotein J4N45_02610 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N45_02620 PF01795 MraW methylase family J4N45_02625 PF04999 Cell division protein FtsL J4N45_02630 PF03717 Penicillin-binding Protein dimerisation domain J4N45_02630 PF00905 Penicillin binding protein transpeptidase domain J4N45_02635 PF08245 Mur ligase middle domain J4N45_02635 PF02875 Mur ligase family, glutamate ligase domain J4N45_02635 PF01225 Mur ligase family, catalytic domain J4N45_02640 PF01225 Mur ligase family, catalytic domain J4N45_02640 PF02875 Mur ligase family, glutamate ligase domain J4N45_02640 PF08245 Mur ligase middle domain J4N45_02645 PF00953 Glycosyl transferase family 4 J4N45_02645 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 J4N45_02650 PF02875 Mur ligase family, glutamate ligase domain J4N45_02650 PF08245 Mur ligase middle domain J4N45_02655 PF01098 Cell cycle protein J4N45_02660 PF04101 Glycosyltransferase family 28 C-terminal domain J4N45_02660 PF03033 Glycosyltransferase family 28 N-terminal domain J4N45_02665 PF08245 Mur ligase middle domain J4N45_02665 PF01225 Mur ligase family, catalytic domain J4N45_02665 PF02875 Mur ligase family, glutamate ligase domain J4N45_02670 PF03799 Cell division protein FtsQ J4N45_02670 PF08478 POTRA domain, FtsQ-type J4N45_02675 PF02491 SHS2 domain inserted in FTSA J4N45_02680 PF12327 FtsZ family, C-terminal domain J4N45_02680 PF00091 Tubulin/FtsZ family, GTPase domain J4N45_02685 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase J4N45_02690 PF02810 SEC-C motif J4N45_02690 PF07517 SecA DEAD-like domain J4N45_02690 PF01043 SecA preprotein cross-linking domain J4N45_02690 PF07516 SecA Wing and Scaffold domain J4N45_02695 PF00293 NUDIX domain J4N45_02700 PF05173 Dihydrodipicolinate reductase, C-terminus J4N45_02700 PF01113 Dihydrodipicolinate reductase, N-terminus J4N45_02705 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain J4N45_02705 PF00117 Glutamine amidotransferase class-I J4N45_02710 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain J4N45_02710 PF02142 MGS-like domain J4N45_02710 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J4N45_02715 PF01925 Sulfite exporter TauE/SafE J4N45_02720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_02720 PF03466 LysR substrate binding domain J4N45_02725 PF00005 ABC transporter J4N45_02730 PF03458 UPF0126 domain J4N45_02735 PF01497 Periplasmic binding protein J4N45_02745 PF01048 Phosphorylase superfamily J4N45_02755 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N45_02755 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster J4N45_02760 PF01493 GXGXG motif J4N45_02760 PF04898 Glutamate synthase central domain J4N45_02760 PF01645 Conserved region in glutamate synthase J4N45_02760 PF00310 Glutamine amidotransferases class-II J4N45_02765 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N45_02765 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster J4N45_02770 PF00310 Glutamine amidotransferases class-II J4N45_02770 PF04898 Glutamate synthase central domain J4N45_02770 PF01645 Conserved region in glutamate synthase J4N45_02770 PF01493 GXGXG motif J4N45_02775 PF04055 Radical SAM superfamily J4N45_02775 PF16199 Radical_SAM C-terminal domain J4N45_02780 PF18415 Histidine kinase receptor ArcB trans-membrane domain J4N45_02780 PF01627 Hpt domain J4N45_02780 PF00989 PAS fold J4N45_02780 PF00072 Response regulator receiver domain J4N45_02780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_02780 PF00512 His Kinase A (phospho-acceptor) domain J4N45_02790 PF00072 Response regulator receiver domain J4N45_02790 PF00486 Transcriptional regulatory protein, C terminal J4N45_02800 PF03737 Aldolase/RraA J4N45_02810 PF13840 ACT domain J4N45_02810 PF01842 ACT domain J4N45_02810 PF00696 Amino acid kinase family J4N45_02810 PF00742 Homoserine dehydrogenase J4N45_02810 PF03447 Homoserine dehydrogenase, NAD binding domain J4N45_02815 PF08544 GHMP kinases C terminal J4N45_02815 PF00288 GHMP kinases N terminal domain J4N45_02820 PF00291 Pyridoxal-phosphate dependent enzyme J4N45_02820 PF14821 Threonine synthase N terminus J4N45_02825 PF00797 N-acetyltransferase J4N45_02830 PF02554 Carbon starvation protein CstA J4N45_02840 PF01380 SIS domain J4N45_02845 PF03702 Anhydro-N-acetylmuramic acid kinase J4N45_02850 PF00933 Glycosyl hydrolase family 3 N terminal domain J4N45_02855 PF04397 LytTr DNA-binding domain J4N45_02855 PF00072 Response regulator receiver domain J4N45_02860 PF06580 Histidine kinase J4N45_02860 PF07694 5TMR of 5TMR-LYT J4N45_02865 PF00793 DAHP synthetase I family J4N45_02870 PF01817 Chorismate mutase type II J4N45_02870 PF02153 Prephenate dehydrogenase J4N45_02895 PF04225 Opacity-associated protein A LysM-like domain J4N45_02895 PF01551 Peptidase family M23 J4N45_02900 PF00005 ABC transporter J4N45_02900 PF12848 ABC transporter J4N45_02905 PF01464 Transglycosylase SLT domain J4N45_02905 PF14718 Soluble lytic murein transglycosylase L domain J4N45_02910 PF01371 Trp repressor protein J4N45_02915 PF01931 Protein of unknown function DUF84 J4N45_02920 PF00691 OmpA family J4N45_02920 PF01389 OmpA-like transmembrane domain J4N45_02925 PF01817 Chorismate mutase type II J4N45_02925 PF00800 Prephenate dehydratase J4N45_02930 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein J4N45_02935 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N45_02935 PF01464 Transglycosylase SLT domain J4N45_02940 PF13525 Outer membrane lipoprotein J4N45_02945 PF00849 RNA pseudouridylate synthase J4N45_02945 PF01479 S4 domain J4N45_02950 PF02578 Multi-copper polyphenol oxidoreductase laccase J4N45_02955 PF10431 C-terminal, D2-small domain, of ClpB protein J4N45_02955 PF02861 Clp amino terminal domain, pathogenicity island component J4N45_02955 PF17871 AAA lid domain J4N45_02955 PF07724 AAA domain (Cdc48 subfamily) J4N45_02955 PF00004 ATPase family associated with various cellular activities (AAA) J4N45_03005 PF12838 4Fe-4S dicluster domain J4N45_03010 PF01136 Peptidase family U32 J4N45_03010 PF16325 Peptidase family U32 C-terminal domain J4N45_03015 PF04381 Putative exonuclease, RdgC J4N45_03020 PF00486 Transcriptional regulatory protein, C terminal J4N45_03020 PF00072 Response regulator receiver domain J4N45_03025 PF00989 PAS fold J4N45_03025 PF00512 His Kinase A (phospho-acceptor) domain J4N45_03025 PF11808 Phosphate regulon sensor protein PhoR J4N45_03025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_03030 PF12849 PBP superfamily domain J4N45_03035 PF02541 Ppx/GppA phosphatase family J4N45_03040 PF02503 Polyphosphate kinase middle domain J4N45_03040 PF13090 Polyphosphate kinase C-terminal domain 2 J4N45_03040 PF13089 Polyphosphate kinase N-terminal domain J4N45_03040 PF17941 Polyphosphate kinase C-terminal domain 1 J4N45_03045 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_03050 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_03055 PF00005 ABC transporter J4N45_03060 PF01895 PhoU domain J4N45_03070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_03070 PF03466 LysR substrate binding domain J4N45_03075 PF03976 Polyphosphate kinase 2 (PPK2) J4N45_03080 PF03932 CutC family J4N45_03085 PF10417 C-terminal domain of 1-Cys peroxiredoxin J4N45_03085 PF00578 AhpC/TSA family J4N45_03090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_03090 PF03466 LysR substrate binding domain J4N45_03095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_03095 PF00512 His Kinase A (phospho-acceptor) domain J4N45_03095 PF09456 RcsC Alpha-Beta-Loop (ABL) J4N45_03095 PF00072 Response regulator receiver domain J4N45_03100 PF00563 EAL domain J4N45_03100 PF00990 Diguanylate cyclase, GGDEF domain J4N45_03100 PF03707 Bacterial signalling protein N terminal repeat J4N45_03105 PF01339 CheB methylesterase J4N45_03105 PF00072 Response regulator receiver domain J4N45_03110 PF00990 Diguanylate cyclase, GGDEF domain J4N45_03120 PF00672 HAMP domain J4N45_03120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N45_03125 PF00571 CBS domain J4N45_03130 PF02547 Queuosine biosynthesis protein J4N45_03135 PF01702 Queuine tRNA-ribosyltransferase J4N45_03140 PF02699 Preprotein translocase subunit J4N45_03145 PF07549 SecD/SecF GG Motif J4N45_03145 PF13721 SecD export protein N-terminal TM region J4N45_03145 PF02355 Protein export membrane protein J4N45_03150 PF02355 Protein export membrane protein J4N45_03150 PF07549 SecD/SecF GG Motif J4N45_03155 PF00459 Inositol monophosphatase family J4N45_03160 PF00588 SpoU rRNA Methylase family J4N45_03165 PF02082 Transcriptional regulator J4N45_03170 PF00266 Aminotransferase class-V J4N45_03175 PF01592 NifU-like N terminal domain J4N45_03180 PF01521 Iron-sulphur cluster biosynthesis J4N45_03185 PF07743 HSCB C-terminal oligomerisation domain J4N45_03185 PF00226 DnaJ domain J4N45_03190 PF00012 Hsp70 protein J4N45_03195 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N45_03200 PF04384 Iron-sulphur cluster assembly J4N45_03205 PF12404 Peptidase J4N45_03205 PF00883 Cytosol aminopeptidase family, catalytic domain J4N45_03210 PF00334 Nucleoside diphosphate kinase J4N45_03215 PF04055 Radical SAM superfamily J4N45_03220 PF13464 Domain of unknown function (DUF4115) J4N45_03225 PF04551 GcpE protein J4N45_03230 PF13393 Histidyl-tRNA synthetase J4N45_03230 PF03129 Anticodon binding domain J4N45_03235 PF09976 Tetratricopeptide repeat-like domain J4N45_03240 PF13360 PQQ-like domain J4N45_03245 PF01926 50S ribosome-binding GTPase J4N45_03245 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal J4N45_03255 PF00563 EAL domain J4N45_03255 PF03707 Bacterial signalling protein N terminal repeat J4N45_03255 PF00990 Diguanylate cyclase, GGDEF domain J4N45_03265 PF02601 Exonuclease VII, large subunit J4N45_03265 PF13742 OB-fold nucleic acid binding domain J4N45_03270 PF00571 CBS domain J4N45_03270 PF00478 IMP dehydrogenase / GMP reductase domain J4N45_03275 PF00117 Glutamine amidotransferase class-I J4N45_03275 PF00958 GMP synthase C terminal domain J4N45_03275 PF02540 NAD synthase J4N45_03280 PF01184 GPR1/FUN34/yaaH family J4N45_03285 PF01235 Sodium:alanine symporter family J4N45_03290 PF03070 TENA/THI-4/PQQC family J4N45_03295 PF09084 NMT1/THI5 like J4N45_03300 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_03305 PF00005 ABC transporter J4N45_03310 PF08543 Phosphomethylpyrimidine kinase J4N45_03315 PF08329 Chitinase A, N-terminal domain J4N45_03315 PF00704 Glycosyl hydrolases family 18 J4N45_03320 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase J4N45_03340 PF01668 SmpB protein J4N45_03345 PF03364 Polyketide cyclase / dehydrase and lipid transport J4N45_03350 PF03658 RnfH family Ubiquitin J4N45_03355 PF04355 SmpA / OmlA family J4N45_03360 PF02463 RecF/RecN/SMC N terminal domain J4N45_03365 PF01513 ATP-NAD kinase J4N45_03370 PF01025 GrpE J4N45_03375 PF00375 Sodium:dicarboxylate symporter family J4N45_03380 PF00012 Hsp70 protein J4N45_03385 PF00226 DnaJ domain J4N45_03385 PF01556 DnaJ C terminal domain J4N45_03385 PF00684 DnaJ central domain J4N45_03390 PF07963 Prokaryotic N-terminal methylation motif J4N45_03390 PF00114 Pilin (bacterial filament) J4N45_03415 PF03806 AbgT putative transporter family J4N45_03420 PF00756 Putative esterase J4N45_03425 PF00107 Zinc-binding dehydrogenase J4N45_03425 PF08240 Alcohol dehydrogenase GroES-like domain J4N45_03430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_03430 PF03466 LysR substrate binding domain J4N45_03435 PF14437 MafB19-like deaminase J4N45_03445 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N45_03445 PF01464 Transglycosylase SLT domain J4N45_03450 PF02769 AIR synthase related protein, C-terminal domain J4N45_03450 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain J4N45_03450 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal J4N45_03470 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J4N45_03470 PF04073 Aminoacyl-tRNA editing domain J4N45_03470 PF03129 Anticodon binding domain J4N45_03475 PF01980 tRNA-methyltransferase O J4N45_03475 PF18389 TrmO C-terminal domain J4N45_03480 PF03806 AbgT putative transporter family J4N45_03485 PF11944 Protein of unknown function (DUF3461) J4N45_03490 PF01909 Nucleotidyltransferase domain J4N45_03490 PF01842 ACT domain J4N45_03490 PF08335 GlnD PII-uridylyltransferase J4N45_03490 PF01966 HD domain J4N45_03495 PF00557 Metallopeptidase family M24 J4N45_03500 PF00318 Ribosomal protein S2 J4N45_03505 PF00889 Elongation factor TS J4N45_03510 PF00696 Amino acid kinase family J4N45_03515 PF01765 Ribosome recycling factor J4N45_03520 PF01255 Putative undecaprenyl diphosphate synthase J4N45_03530 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain J4N45_03530 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase J4N45_03530 PF13288 DXP reductoisomerase C-terminal domain J4N45_03535 PF02163 Peptidase family M50 J4N45_03535 PF17820 PDZ domain J4N45_03540 PF07244 Surface antigen variable number repeat J4N45_03540 PF01103 Surface antigen J4N45_03545 PF03938 Outer membrane protein (OmpH-like) J4N45_03550 PF00132 Bacterial transferase hexapeptide (six repeats) J4N45_03550 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD J4N45_03555 PF07977 FabA-like domain J4N45_03560 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 J4N45_03560 PF00132 Bacterial transferase hexapeptide (six repeats) J4N45_03565 PF02684 Lipid-A-disaccharide synthetase J4N45_03570 PF01351 Ribonuclease HII J4N45_03575 PF07733 Bacterial DNA polymerase III alpha NTPase domain J4N45_03575 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J4N45_03575 PF01336 OB-fold nucleic acid binding domain J4N45_03575 PF02811 PHP domain J4N45_03575 PF14579 Helix-hairpin-helix motif J4N45_03580 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit J4N45_03585 PF01171 PP-loop family J4N45_03585 PF09179 TilS substrate binding domain J4N45_03585 PF11734 TilS substrate C-terminal domain J4N45_03590 PF00034 Cytochrome c J4N45_03595 PF00543 Nitrogen regulatory protein P-II J4N45_03600 PF03372 Endonuclease/Exonuclease/phosphatase family J4N45_03610 PF01784 NIF3 (NGG1p interacting factor 3) J4N45_03615 PF00285 Citrate synthase, C-terminal domain J4N45_03620 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit J4N45_03625 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit J4N45_03630 PF00890 FAD binding domain J4N45_03630 PF02910 Fumarate reductase flavoprotein C-term J4N45_03635 PF13085 2Fe-2S iron-sulfur cluster binding domain J4N45_03640 PF16078 2-oxoglutarate dehydrogenase N-terminus J4N45_03640 PF00676 Dehydrogenase E1 component J4N45_03640 PF16870 2-oxoglutarate dehydrogenase C-terminal J4N45_03640 PF02779 Transketolase, pyrimidine binding domain J4N45_03645 PF02817 e3 binding domain J4N45_03645 PF00364 Biotin-requiring enzyme J4N45_03645 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J4N45_03650 PF00549 CoA-ligase J4N45_03650 PF08442 ATP-grasp domain J4N45_03655 PF00549 CoA-ligase J4N45_03655 PF02629 CoA binding domain J4N45_03660 PF00950 ABC 3 transport family J4N45_03665 PF00005 ABC transporter J4N45_03670 PF01297 Zinc-uptake complex component A periplasmic J4N45_03680 PF02626 Carboxyltransferase domain, subdomain A and B J4N45_03690 PF03746 LamB/YcsF family J4N45_03695 PF04023 FeoA domain J4N45_03700 PF07670 Nucleoside recognition J4N45_03700 PF07664 Ferrous iron transport protein B C terminus J4N45_03700 PF02421 Ferrous iron transport protein B J4N45_03715 PF00750 tRNA synthetases class I (R) J4N45_03715 PF03485 Arginyl tRNA synthetase N terminal domain J4N45_03715 PF05746 DALR anticodon binding domain J4N45_03720 PF06185 YecM protein J4N45_03730 PF00551 Formyl transferase J4N45_03730 PF01842 ACT domain J4N45_03735 PF13307 Helicase C-terminal domain J4N45_03735 PF04851 Type III restriction enzyme, res subunit J4N45_03740 PF00814 Glycoprotease family J4N45_03760 PF00501 AMP-binding enzyme J4N45_03760 PF13193 AMP-binding enzyme C-terminal domain J4N45_03765 PF01612 3'-5' exonuclease J4N45_03765 PF00570 HRDC domain J4N45_03770 PF03776 Septum formation topological specificity factor MinE J4N45_03775 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J4N45_03780 PF03775 Septum formation inhibitor MinC, C-terminal domain J4N45_03780 PF05209 Septum formation inhibitor MinC, N-terminal domain J4N45_03785 PF05166 YcgL domain J4N45_03790 PF13406 Transglycosylase SLT domain J4N45_03795 PF00381 PTS HPr component phosphorylation site J4N45_03800 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain J4N45_03800 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain J4N45_03820 PF00270 DEAD/DEAH box helicase J4N45_03820 PF00271 Helicase conserved C-terminal domain J4N45_03835 PF01145 SPFH domain / Band 7 family J4N45_03835 PF16200 C-terminal region of band_7 J4N45_03840 PF00085 Thioredoxin J4N45_03845 PF00106 short chain dehydrogenase J4N45_03850 PF08338 Domain of unknown function (DUF1731) J4N45_03850 PF01370 NAD dependent epimerase/dehydratase family J4N45_03855 PF07556 Protein of unknown function (DUF1538) J4N45_03860 PF07556 Protein of unknown function (DUF1538) J4N45_03875 PF12850 Calcineurin-like phosphoesterase superfamily domain J4N45_03880 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 J4N45_03885 PF02896 PEP-utilising enzyme, TIM barrel domain J4N45_03885 PF00391 PEP-utilising enzyme, mobile domain J4N45_03885 PF05524 PEP-utilising enzyme, N-terminal J4N45_03890 PF00381 PTS HPr component phosphorylation site J4N45_03895 PF00291 Pyridoxal-phosphate dependent enzyme J4N45_03900 PF00795 Carbon-nitrogen hydrolase J4N45_03905 PF03471 Transporter associated domain J4N45_03905 PF00571 CBS domain J4N45_03910 PF02130 Uncharacterized protein family UPF0054 J4N45_03915 PF02562 PhoH-like protein J4N45_03920 PF01938 TRAM domain J4N45_03920 PF00919 Uncharacterized protein family UPF0004 J4N45_03920 PF04055 Radical SAM superfamily J4N45_03925 PF01494 FAD binding domain J4N45_03930 PF10282 Lactonase, 7-bladed beta-propeller J4N45_04030 PF01926 50S ribosome-binding GTPase J4N45_04030 PF06071 Protein of unknown function (DUF933) J4N45_04035 PF01195 Peptidyl-tRNA hydrolase J4N45_04040 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase J4N45_04040 PF14572 Phosphoribosyl synthetase-associated domain J4N45_04045 PF08544 GHMP kinases C terminal J4N45_04045 PF00288 GHMP kinases N terminal domain J4N45_04050 PF03550 Outer membrane lipoprotein LolB J4N45_04055 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain J4N45_04055 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain J4N45_04055 PF01488 Shikimate / quinate 5-dehydrogenase J4N45_04060 PF00472 RF-1 domain J4N45_04060 PF03462 PCRF domain J4N45_04065 PF17827 PrmC N-terminal domain J4N45_04065 PF13847 Methyltransferase domain J4N45_04070 PF04247 Invasion gene expression up-regulator, SirB J4N45_04075 PF13369 Transglutaminase-like superfamily J4N45_04080 PF00793 DAHP synthetase I family J4N45_04085 PF00149 Calcineurin-like phosphoesterase J4N45_04085 PF02872 5'-nucleotidase, C-terminal domain J4N45_04090 PF04073 Aminoacyl-tRNA editing domain J4N45_04095 PF01479 S4 domain J4N45_04095 PF00849 RNA pseudouridylate synthase J4N45_04100 PF01713 Smr domain J4N45_04120 PF01568 Molydopterin dinucleotide binding domain J4N45_04120 PF00384 Molybdopterin oxidoreductase J4N45_04120 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J4N45_04120 PF12838 4Fe-4S dicluster domain J4N45_04120 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region J4N45_04130 PF00486 Transcriptional regulatory protein, C terminal J4N45_04130 PF00072 Response regulator receiver domain J4N45_04135 PF00672 HAMP domain J4N45_04135 PF00512 His Kinase A (phospho-acceptor) domain J4N45_04135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_04140 PF01547 Bacterial extracellular solute-binding protein J4N45_04145 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_04150 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_04155 PF03459 TOBE domain J4N45_04155 PF00005 ABC transporter J4N45_04155 PF17912 MalK OB fold domain J4N45_04160 PF03480 Bacterial extracellular solute-binding protein, family 7 J4N45_04165 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component J4N45_04170 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J4N45_04180 PF02954 Bacterial regulatory protein, Fis family J4N45_04180 PF00158 Sigma-54 interaction domain J4N45_04180 PF00072 Response regulator receiver domain J4N45_04185 PF02743 Cache domain J4N45_04185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_04185 PF00512 His Kinase A (phospho-acceptor) domain J4N45_04190 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N45_04190 PF05698 Bacterial trigger factor protein (TF) C-terminus J4N45_04190 PF05697 Bacterial trigger factor protein (TF) J4N45_04195 PF00574 Clp protease J4N45_04200 PF06689 ClpX C4-type zinc finger J4N45_04200 PF10431 C-terminal, D2-small domain, of ClpB protein J4N45_04200 PF07724 AAA domain (Cdc48 subfamily) J4N45_04205 PF02190 ATP-dependent protease La (LON) substrate-binding domain J4N45_04205 PF00004 ATPase family associated with various cellular activities (AAA) J4N45_04205 PF05362 Lon protease (S16) C-terminal proteolytic domain J4N45_04210 PF00216 Bacterial DNA-binding protein J4N45_04215 PF13145 PPIC-type PPIASE domain J4N45_04235 PF01966 HD domain J4N45_04235 PF13286 Phosphohydrolase-associated domain J4N45_04245 PF00155 Aminotransferase class I and II J4N45_04250 PF00425 chorismate binding enzyme J4N45_04255 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J4N45_04255 PF16582 Middle domain of thiamine pyrophosphate J4N45_04255 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J4N45_04260 PF12697 Alpha/beta hydrolase family J4N45_04265 PF00378 Enoyl-CoA hydratase/isomerase J4N45_04270 PF13378 Enolase C-terminal domain-like J4N45_04275 PF13193 AMP-binding enzyme C-terminal domain J4N45_04275 PF00501 AMP-binding enzyme J4N45_04285 PF03601 Conserved hypothetical protein 698 J4N45_04290 PF07690 Major Facilitator Superfamily J4N45_04310 PF01515 Phosphate acetyl/butaryl transferase J4N45_04310 PF07085 DRTGG domain J4N45_04315 PF00871 Acetokinase family J4N45_04320 PF04217 Protein of unknown function, DUF412 J4N45_04325 PF07995 Glucose / Sorbosone dehydrogenase J4N45_04335 PF02653 Branched-chain amino acid transport system / permease component J4N45_04340 PF00005 ABC transporter J4N45_04345 PF02903 Alpha amylase, N-terminal ig-like domain J4N45_04345 PF00128 Alpha amylase, catalytic domain J4N45_04350 PF01207 Dihydrouridine synthase (Dus) J4N45_04355 PF02810 SEC-C motif J4N45_04355 PF07517 SecA DEAD-like domain J4N45_04355 PF01043 SecA preprotein cross-linking domain J4N45_04355 PF07516 SecA Wing and Scaffold domain J4N45_04360 PF02600 Disulfide bond formation protein DsbB J4N45_04365 PF06450 Bacterial Na+/H+ antiporter B (NhaB) J4N45_04375 PF00392 Bacterial regulatory proteins, gntR family J4N45_04375 PF07840 FadR C-terminal domain J4N45_04390 PF09334 tRNA synthetases class I (M) J4N45_04390 PF01588 Putative tRNA binding domain J4N45_04395 PF10609 NUBPL iron-transfer P-loop NTPase J4N45_04400 PF00485 Phosphoribulokinase / Uridine kinase family J4N45_04405 PF05170 AsmA family J4N45_04415 PF12557 Cob(I)alamin adenosyltransferase N terminal J4N45_04415 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP J4N45_04420 PF01316 Arginine repressor, DNA binding domain J4N45_04420 PF02863 Arginine repressor, C-terminal domain J4N45_04425 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J4N45_04425 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J4N45_04430 PF00696 Amino acid kinase family J4N45_04440 PF03606 C4-dicarboxylate anaerobic carrier J4N45_04470 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_04480 PF00005 ABC transporter J4N45_04480 PF12857 TOBE-like domain J4N45_04485 PF00300 Histidine phosphatase superfamily (branch 1) J4N45_04500 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_04505 PF00005 ABC transporter J4N45_04505 PF08402 TOBE domain J4N45_04510 PF03009 Glycerophosphoryl diester phosphodiesterase family J4N45_04515 PF00356 Bacterial regulatory proteins, lacI family J4N45_04520 PF00459 Inositol monophosphatase family J4N45_04525 PF07690 Major Facilitator Superfamily J4N45_04540 PF00128 Alpha amylase, catalytic domain J4N45_04540 PF16657 Maltogenic Amylase, C-terminal domain J4N45_04545 PF02378 Phosphotransferase system, EIIC J4N45_04545 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 J4N45_04545 PF00367 phosphotransferase system, EIIB J4N45_04550 PF03372 Endonuclease/Exonuclease/phosphatase family J4N45_04565 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain J4N45_04565 PF00589 Phage integrase family J4N45_04575 PF02796 Helix-turn-helix domain of resolvase J4N45_04575 PF00239 Resolvase, N terminal domain J4N45_04620 PF01451 Low molecular weight phosphotyrosine protein phosphatase J4N45_04625 PF07670 Nucleoside recognition J4N45_04625 PF07662 Na+ dependent nucleoside transporter C-terminus J4N45_04625 PF01773 Na+ dependent nucleoside transporter N-terminus J4N45_04630 PF00710 Asparaginase, N-terminal J4N45_04630 PF17763 Glutaminase/Asparaginase C-terminal domain J4N45_04635 PF01343 Peptidase family S49 J4N45_04640 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J4N45_04640 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N45_04645 PF00881 Nitroreductase family J4N45_04650 PF01131 DNA topoisomerase J4N45_04650 PF01751 Toprim domain J4N45_04655 PF00106 short chain dehydrogenase J4N45_04660 PF00850 Histone deacetylase domain J4N45_04675 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J4N45_04690 PF11893 Domain of unknown function (DUF3413) J4N45_04690 PF00884 Sulfatase J4N45_04695 PF07208 Protein of unknown function (DUF1414) J4N45_04700 PF04245 37-kD nucleoid-associated bacterial protein J4N45_04715 PF01118 Semialdehyde dehydrogenase, NAD binding domain J4N45_04715 PF02774 Semialdehyde dehydrogenase, dimerisation domain J4N45_04720 PF00520 Ion transport protein J4N45_04720 PF00027 Cyclic nucleotide-binding domain J4N45_04725 PF01914 MarC family integral membrane protein J4N45_04730 PF00465 Iron-containing alcohol dehydrogenase J4N45_04730 PF00171 Aldehyde dehydrogenase family J4N45_04745 PF02777 Iron/manganese superoxide dismutases, C-terminal domain J4N45_04745 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain J4N45_04750 PF00462 Glutaredoxin J4N45_04755 PF00672 HAMP domain J4N45_04755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N45_04755 PF17202 Single cache domain 3 J4N45_04760 PF00291 Pyridoxal-phosphate dependent enzyme J4N45_04765 PF01037 Lrp/AsnC ligand binding domain J4N45_04765 PF13404 AsnC-type helix-turn-helix domain J4N45_04770 PF00465 Iron-containing alcohol dehydrogenase J4N45_04775 PF00171 Aldehyde dehydrogenase family J4N45_04805 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J4N45_04900 PF00990 Diguanylate cyclase, GGDEF domain J4N45_04905 PF00072 Response regulator receiver domain J4N45_04905 PF00196 Bacterial regulatory proteins, luxR family J4N45_04910 PF03707 Bacterial signalling protein N terminal repeat J4N45_04910 PF00990 Diguanylate cyclase, GGDEF domain J4N45_04910 PF00563 EAL domain J4N45_04915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_04915 PF00512 His Kinase A (phospho-acceptor) domain J4N45_04915 PF09456 RcsC Alpha-Beta-Loop (ABL) J4N45_04915 PF00072 Response regulator receiver domain J4N45_04920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N45_04920 PF00672 HAMP domain J4N45_04920 PF02743 Cache domain J4N45_04925 PF00419 Fimbrial protein J4N45_04930 PF02753 Pili assembly chaperone PapD, C-terminal domain J4N45_04930 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain J4N45_04935 PF13954 PapC N-terminal domain J4N45_04935 PF00577 Outer membrane usher protein J4N45_04935 PF13953 PapC C-terminal domain J4N45_05025 PF00672 HAMP domain J4N45_05025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_05025 PF00512 His Kinase A (phospho-acceptor) domain J4N45_05025 PF01627 Hpt domain J4N45_05025 PF00072 Response regulator receiver domain J4N45_05025 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J4N45_05030 PF00072 Response regulator receiver domain J4N45_05030 PF00196 Bacterial regulatory proteins, luxR family J4N45_05040 PF07690 Major Facilitator Superfamily J4N45_05055 PF00155 Aminotransferase class I and II J4N45_05070 PF00113 Enolase, C-terminal TIM barrel domain J4N45_05070 PF03952 Enolase, N-terminal domain J4N45_05080 PF00171 Aldehyde dehydrogenase family J4N45_05090 PF00474 Sodium:solute symporter family J4N45_05095 PF01116 Fructose-bisphosphate aldolase class-II J4N45_05100 PF00294 pfkB family carbohydrate kinase J4N45_05110 PF02311 AraC-like ligand binding domain J4N45_05110 PF12833 Helix-turn-helix domain J4N45_05120 PF05368 NmrA-like family J4N45_05135 PF01609 Transposase DDE domain J4N45_05135 PF13006 Insertion element 4 transposase N-terminal J4N45_05145 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term J4N45_05145 PF12833 Helix-turn-helix domain J4N45_05155 PF00529 HlyD membrane-fusion protein of T1SS J4N45_05155 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N45_05165 PF01464 Transglycosylase SLT domain J4N45_05165 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain J4N45_05195 PF00924 Mechanosensitive ion channel J4N45_05200 PF01758 Sodium Bile acid symporter family J4N45_05205 PF01266 FAD dependent oxidoreductase J4N45_05220 PF00365 Phosphofructokinase J4N45_05230 PF03611 PTS system sugar-specific permease component J4N45_05235 PF01116 Fructose-bisphosphate aldolase class-II J4N45_05245 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N45_05260 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_05265 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N45_05270 PF00005 ABC transporter J4N45_05270 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N45_05275 PF00005 ABC transporter J4N45_05275 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N45_05280 PF01554 MatE J4N45_05290 PF01975 Survival protein SurE J4N45_05310 PF00005 ABC transporter J4N45_05315 PF01032 FecCD transport family J4N45_05320 PF01032 FecCD transport family J4N45_05330 PF07715 TonB-dependent Receptor Plug Domain J4N45_05330 PF00593 TonB dependent receptor J4N45_05340 PF01979 Amidohydrolase family J4N45_05345 PF00132 Bacterial transferase hexapeptide (six repeats) J4N45_05350 PF02492 CobW/HypB/UreG, nucleotide-binding domain J4N45_05350 PF07683 Cobalamin synthesis protein cobW C-terminal domain J4N45_05355 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family J4N45_05360 PF00270 DEAD/DEAH box helicase J4N45_05360 PF00271 Helicase conserved C-terminal domain J4N45_05370 PF00270 DEAD/DEAH box helicase J4N45_05370 PF00271 Helicase conserved C-terminal domain J4N45_05375 PF01554 MatE J4N45_05380 PF00313 'Cold-shock' DNA-binding domain J4N45_05395 PF13378 Enolase C-terminal domain-like J4N45_05395 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J4N45_05405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_05405 PF03466 LysR substrate binding domain J4N45_05410 PF01219 Prokaryotic diacylglycerol kinase J4N45_05420 PF00563 EAL domain J4N45_05420 PF00990 Diguanylate cyclase, GGDEF domain J4N45_05420 PF13426 PAS domain J4N45_05430 PF01266 FAD dependent oxidoreductase J4N45_05430 PF05430 S-adenosyl-L-methionine-dependent methyltransferase J4N45_05435 PF00109 Beta-ketoacyl synthase, N-terminal domain J4N45_05435 PF02801 Beta-ketoacyl synthase, C-terminal domain J4N45_05440 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N45_05440 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J4N45_05440 PF11890 Domain of unknown function (DUF3410) J4N45_05445 PF01118 Semialdehyde dehydrogenase, NAD binding domain J4N45_05445 PF02774 Semialdehyde dehydrogenase, dimerisation domain J4N45_05455 PF01416 tRNA pseudouridine synthase J4N45_05460 PF01039 Carboxyl transferase domain J4N45_05460 PF17848 Acetyl-coA carboxylase zinc finger domain J4N45_05465 PF02875 Mur ligase family, glutamate ligase domain J4N45_05465 PF08245 Mur ligase middle domain J4N45_05470 PF05036 Sporulation related domain J4N45_05475 PF02674 Colicin V production protein J4N45_05480 PF00156 Phosphoribosyl transferase domain J4N45_05485 PF03466 LysR substrate binding domain J4N45_05485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_05490 PF00072 Response regulator receiver domain J4N45_05495 PF04304 Protein of unknown function (DUF454) J4N45_05500 PF00156 Phosphoribosyl transferase domain J4N45_05505 PF12170 DNA polymerase III tau subunit V interacting with alpha J4N45_05505 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding J4N45_05505 PF12169 DNA polymerase III subunits gamma and tau domain III J4N45_05510 PF02575 YbaB/EbfC DNA-binding family J4N45_05515 PF13662 Toprim domain J4N45_05515 PF02132 RecR protein J4N45_05520 PF00230 Major intrinsic protein J4N45_05525 PF03692 Putative zinc- or iron-chelating domain J4N45_05530 PF03692 Putative zinc- or iron-chelating domain J4N45_05605 PF02028 BCCT, betaine/carnitine/choline family transporter J4N45_05620 PF13847 Methyltransferase domain J4N45_05625 PF01263 Aldose 1-epimerase J4N45_05630 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J4N45_05630 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J4N45_05635 PF01641 SelR domain J4N45_05645 PF08787 Alginate lyase J4N45_05650 PF02224 Cytidylate kinase J4N45_05655 PF00575 S1 RNA binding domain J4N45_05660 PF00216 Bacterial DNA-binding protein J4N45_05665 PF06305 Lipopolysaccharide assembly protein A domain J4N45_05670 PF18073 Rubredoxin metal binding domain J4N45_05675 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family J4N45_05680 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) J4N45_05690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_05690 PF03466 LysR substrate binding domain J4N45_05700 PF01262 Alanine dehydrogenase/PNT, C-terminal domain J4N45_05700 PF05222 Alanine dehydrogenase/PNT, N-terminal domain J4N45_05705 PF01037 Lrp/AsnC ligand binding domain J4N45_05710 PF01580 FtsK/SpoIIIE family J4N45_05710 PF09397 Ftsk gamma domain J4N45_05710 PF13491 4TM region of DNA translocase FtsK/SpoIIIE J4N45_05710 PF17854 FtsK alpha domain J4N45_05715 PF03548 Outer membrane lipoprotein carrier protein LolA J4N45_05720 PF00004 ATPase family associated with various cellular activities (AAA) J4N45_05720 PF16193 AAA C-terminal domain J4N45_05720 PF12002 MgsA AAA+ ATPase C terminal J4N45_05725 PF02403 Seryl-tRNA synthetase N-terminal domain J4N45_05725 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J4N45_05730 PF01258 Prokaryotic dksA/traR C4-type zinc finger J4N45_05735 PF00202 Aminotransferase class-III J4N45_05740 PF06968 Biotin and Thiamin Synthesis associated domain J4N45_05740 PF04055 Radical SAM superfamily J4N45_05745 PF00155 Aminotransferase class I and II J4N45_05750 PF08241 Methyltransferase domain J4N45_05760 PF00483 Nucleotidyl transferase J4N45_05765 PF00534 Glycosyl transferases group 1 J4N45_05765 PF08323 Starch synthase catalytic domain J4N45_05785 PF04994 TfoX C-terminal domain J4N45_05785 PF04993 TfoX N-terminal domain J4N45_05790 PF00356 Bacterial regulatory proteins, lacI family J4N45_05795 PF02613 Nitrate reductase delta subunit J4N45_05800 PF00072 Response regulator receiver domain J4N45_05800 PF00486 Transcriptional regulatory protein, C terminal J4N45_05805 PF00704 Glycosyl hydrolases family 18 J4N45_05810 PF02698 DUF218 domain J4N45_05815 PF13847 Methyltransferase domain J4N45_05820 PF17192 MukF middle domain J4N45_05820 PF17193 MukF C-terminal domain J4N45_05820 PF03882 MukF winged-helix domain J4N45_05825 PF04288 MukE-like family J4N45_05830 PF16330 MukB hinge domain J4N45_05830 PF04310 MukB N-terminal J4N45_05835 PF08543 Phosphomethylpyrimidine kinase J4N45_05840 PF10689 Protein of unknown function (DUF2496) J4N45_05850 PF01925 Sulfite exporter TauE/SafE J4N45_05855 PF06733 DEAD_2 J4N45_05855 PF13307 Helicase C-terminal domain J4N45_05860 PF13609 Gram-negative porin J4N45_05865 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) J4N45_05885 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J4N45_05900 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J4N45_05905 PF00535 Glycosyl transferase family 2 J4N45_05910 PF01370 NAD dependent epimerase/dehydratase family J4N45_05910 PF02911 Formyl transferase, C-terminal domain J4N45_05910 PF00551 Formyl transferase J4N45_05915 PF01522 Polysaccharide deacetylase J4N45_05920 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase J4N45_05925 PF00892 EamA-like transporter family J4N45_05940 PF02397 Bacterial sugar transferase J4N45_05945 PF00535 Glycosyl transferase family 2 J4N45_05950 PF13439 Glycosyltransferase Family 4 J4N45_05950 PF00534 Glycosyl transferases group 1 J4N45_05965 PF00132 Bacterial transferase hexapeptide (six repeats) J4N45_05965 PF12464 Maltose acetyltransferase J4N45_05975 PF13439 Glycosyltransferase Family 4 J4N45_05975 PF00534 Glycosyl transferases group 1 J4N45_05980 PF00072 Response regulator receiver domain J4N45_05980 PF00158 Sigma-54 interaction domain J4N45_05980 PF02954 Bacterial regulatory protein, Fis family J4N45_05995 PF00691 OmpA family J4N45_06000 PF01740 STAS domain J4N45_06005 PF00535 Glycosyl transferase family 2 J4N45_06015 PF13439 Glycosyltransferase Family 4 J4N45_06015 PF00534 Glycosyl transferases group 1 J4N45_06020 PF08497 Radical SAM N-terminal J4N45_06020 PF11842 Domain of unknown function (DUF3362) J4N45_06020 PF04055 Radical SAM superfamily J4N45_06035 PF02810 SEC-C motif J4N45_06040 PF00563 EAL domain J4N45_06040 PF08668 HDOD domain J4N45_06045 PF00149 Calcineurin-like phosphoesterase J4N45_06050 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J4N45_06055 PF01406 tRNA synthetases class I (C) catalytic domain J4N45_06055 PF09190 DALR domain J4N45_06060 PF00265 Thymidine kinase J4N45_06065 PF01370 NAD dependent epimerase/dehydratase family J4N45_06070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_06070 PF03466 LysR substrate binding domain J4N45_06095 PF01226 Formate/nitrite transporter J4N45_06105 PF03649 Uncharacterised protein family (UPF0014) J4N45_06110 PF06796 Periplasmic nitrate reductase protein NapE J4N45_06115 PF03264 NapC/NirT cytochrome c family, N-terminal region J4N45_06120 PF18364 Molybdopterin oxidoreductase N-terminal domain J4N45_06120 PF00384 Molybdopterin oxidoreductase J4N45_06120 PF01568 Molydopterin dinucleotide binding domain J4N45_06135 PF01368 DHH family J4N45_06135 PF02833 DHHA2 domain J4N45_06145 PF01569 PAP2 superfamily J4N45_06150 PF04269 Protein of unknown function, DUF440 J4N45_06155 PF01132 Elongation factor P (EF-P) OB domain J4N45_06155 PF09285 Elongation factor P, C-terminal J4N45_06155 PF08207 Elongation factor P (EF-P) KOW-like domain J4N45_06165 PF03104 DNA polymerase family B, exonuclease domain J4N45_06165 PF00136 DNA polymerase family B J4N45_06170 PF00196 Bacterial regulatory proteins, luxR family J4N45_06170 PF00072 Response regulator receiver domain J4N45_06175 PF02151 UvrB/uvrC motif J4N45_06175 PF08459 UvrC Helix-hairpin-helix N-terminal J4N45_06175 PF01541 GIY-YIG catalytic domain J4N45_06180 PF01066 CDP-alcohol phosphatidyltransferase J4N45_06205 PF00677 Lumazine binding domain J4N45_06210 PF00202 Aminotransferase class-III J4N45_06215 PF16653 Saccharopine dehydrogenase C-terminal domain J4N45_06215 PF03435 Saccharopine dehydrogenase NADP binding domain J4N45_06220 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain J4N45_06245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_06245 PF03466 LysR substrate binding domain J4N45_06250 PF00072 Response regulator receiver domain J4N45_06250 PF04397 LytTr DNA-binding domain J4N45_06255 PF07694 5TMR of 5TMR-LYT J4N45_06255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_06255 PF06580 Histidine kinase J4N45_06275 PF00005 ABC transporter J4N45_06275 PF02687 FtsX-like permease family J4N45_06275 PF12704 MacB-like periplasmic core domain J4N45_06295 PF00043 Glutathione S-transferase, C-terminal domain J4N45_06295 PF02798 Glutathione S-transferase, N-terminal domain J4N45_06300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_06305 PF00384 Molybdopterin oxidoreductase J4N45_06305 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J4N45_06305 PF01568 Molydopterin dinucleotide binding domain J4N45_06310 PF13247 4Fe-4S dicluster domain J4N45_06310 PF12800 4Fe-4S binding domain J4N45_06315 PF04976 DMSO reductase anchor subunit (DmsC) J4N45_06320 PF02613 Nitrate reductase delta subunit J4N45_06330 PF03880 DbpA RNA binding domain J4N45_06330 PF00270 DEAD/DEAH box helicase J4N45_06330 PF00271 Helicase conserved C-terminal domain J4N45_06345 PF00925 GTP cyclohydrolase II J4N45_06370 PF03734 L,D-transpeptidase catalytic domain J4N45_06370 PF01471 Putative peptidoglycan binding domain J4N45_06375 PF00753 Metallo-beta-lactamase superfamily J4N45_06390 PF03480 Bacterial extracellular solute-binding protein, family 7 J4N45_06400 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J4N45_06405 PF17200 Single Cache domain 2 J4N45_06405 PF07730 Histidine kinase J4N45_06410 PF00072 Response regulator receiver domain J4N45_06410 PF00196 Bacterial regulatory proteins, luxR family J4N45_06415 PF01047 MarR family J4N45_06420 PF02028 BCCT, betaine/carnitine/choline family transporter J4N45_06425 PF00132 Bacterial transferase hexapeptide (six repeats) J4N45_06430 PF02743 Cache domain J4N45_06430 PF00672 HAMP domain J4N45_06430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N45_06445 PF00155 Aminotransferase class I and II J4N45_06455 PF08220 DeoR-like helix-turn-helix domain J4N45_06455 PF00455 DeoR C terminal sensor domain J4N45_06470 PF12704 MacB-like periplasmic core domain J4N45_06470 PF00005 ABC transporter J4N45_06470 PF02687 FtsX-like permease family J4N45_06475 PF00005 ABC transporter J4N45_06475 PF12704 MacB-like periplasmic core domain J4N45_06475 PF02687 FtsX-like permease family J4N45_06480 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N45_06485 PF00152 tRNA synthetases class II (D, K and N) J4N45_06485 PF01336 OB-fold nucleic acid binding domain J4N45_06490 PF00672 HAMP domain J4N45_06490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N45_06490 PF12729 Four helix bundle sensory module for signal transduction J4N45_06500 PF00535 Glycosyl transferase family 2 J4N45_06510 PF03315 Serine dehydratase beta chain J4N45_06510 PF03313 Serine dehydratase alpha chain J4N45_06515 PF03222 Tryptophan/tyrosine permease family J4N45_06520 PF00293 NUDIX domain J4N45_06530 PF04545 Sigma-70, region 4 J4N45_06530 PF04539 Sigma-70 region 3 J4N45_06530 PF04542 Sigma-70 region 2 J4N45_06530 PF00140 Sigma-70 factor, region 1.2 J4N45_06545 PF00990 Diguanylate cyclase, GGDEF domain J4N45_06545 PF00563 EAL domain J4N45_06545 PF03707 Bacterial signalling protein N terminal repeat J4N45_06560 PF00512 His Kinase A (phospho-acceptor) domain J4N45_06560 PF09308 LuxQ, periplasmic J4N45_06560 PF00072 Response regulator receiver domain J4N45_06560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_06565 PF04715 Anthranilate synthase component I, N terminal region J4N45_06565 PF00425 chorismate binding enzyme J4N45_06580 PF04317 YcjX-like family, DUF463 J4N45_06585 PF05128 Domain of unknown function (DUF697) J4N45_06590 PF00939 Sodium:sulfate symporter transmembrane region J4N45_06595 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N45_06595 PF00512 His Kinase A (phospho-acceptor) domain J4N45_06595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_06605 PF00581 Rhodanese-like domain J4N45_06610 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter J4N45_06610 PF00361 Proton-conducting membrane transporter J4N45_06610 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J4N45_06610 PF13244 Domain of unknown function (DUF4040) J4N45_06615 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L J4N45_06620 PF00361 Proton-conducting membrane transporter J4N45_06625 PF01899 Na+/H+ ion antiporter subunit J4N45_06630 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) J4N45_06635 PF03334 Na+/H+ antiporter subunit J4N45_06650 PF00753 Metallo-beta-lactamase superfamily J4N45_06675 PF00672 HAMP domain J4N45_06675 PF02743 Cache domain J4N45_06675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N45_06680 PF01594 AI-2E family transporter J4N45_06690 PF13533 Biotin-lipoyl like J4N45_06710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_06710 PF00512 His Kinase A (phospho-acceptor) domain J4N45_06710 PF09308 LuxQ, periplasmic J4N45_06710 PF00072 Response regulator receiver domain J4N45_06715 PF00005 ABC transporter J4N45_06720 PF02687 FtsX-like permease family J4N45_06720 PF12704 MacB-like periplasmic core domain J4N45_06735 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J4N45_06735 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J4N45_06740 PF00230 Major intrinsic protein J4N45_06745 PF00455 DeoR C terminal sensor domain J4N45_06745 PF08220 DeoR-like helix-turn-helix domain J4N45_06750 PF01266 FAD dependent oxidoreductase J4N45_06750 PF04324 BFD-like [2Fe-2S] binding domain J4N45_06755 PF00890 FAD binding domain J4N45_06760 PF02754 Cysteine-rich domain J4N45_06760 PF13183 4Fe-4S dicluster domain J4N45_06775 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_06780 PF00571 CBS domain J4N45_06780 PF00005 ABC transporter J4N45_06790 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J4N45_06795 PF02152 Dihydroneopterin aldolase J4N45_06800 PF01227 GTP cyclohydrolase I J4N45_06820 PF00535 Glycosyl transferase family 2 J4N45_06840 PF03412 Peptidase C39 family J4N45_06840 PF00664 ABC transporter transmembrane region J4N45_06840 PF00005 ABC transporter J4N45_06845 PF00132 Bacterial transferase hexapeptide (six repeats) J4N45_06845 PF12464 Maltose acetyltransferase J4N45_06850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_06850 PF03466 LysR substrate binding domain J4N45_06855 PF07286 Protein of unknown function (DUF1445) J4N45_06860 PF03746 LamB/YcsF family J4N45_06865 PF02682 Carboxyltransferase domain, subdomain C and D J4N45_06870 PF02626 Carboxyltransferase domain, subdomain A and B J4N45_06885 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J4N45_06895 PF01425 Amidase J4N45_06905 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain J4N45_06905 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain J4N45_06910 PF02874 ATP synthase alpha/beta family, beta-barrel domain J4N45_06910 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N45_06915 PF00231 ATP synthase J4N45_06920 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N45_06920 PF00306 ATP synthase alpha/beta chain, C terminal domain J4N45_06920 PF02874 ATP synthase alpha/beta family, beta-barrel domain J4N45_06925 PF00213 ATP synthase delta (OSCP) subunit J4N45_06930 PF00430 ATP synthase B/B' CF(0) J4N45_06935 PF00137 ATP synthase subunit C J4N45_06940 PF00119 ATP synthase A chain J4N45_06950 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J4N45_06955 PF02152 Dihydroneopterin aldolase J4N45_06960 PF01227 GTP cyclohydrolase I J4N45_06970 PF01386 Ribosomal L25p family J4N45_06975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_06980 PF00072 Response regulator receiver domain J4N45_06980 PF00486 Transcriptional regulatory protein, C terminal J4N45_06990 PF04851 Type III restriction enzyme, res subunit J4N45_06990 PF00271 Helicase conserved C-terminal domain J4N45_06995 PF01479 S4 domain J4N45_06995 PF00849 RNA pseudouridylate synthase J4N45_07000 PF07690 Major Facilitator Superfamily J4N45_07010 PF13460 NAD(P)H-binding J4N45_07010 PF11066 Protein of unknown function (DUF2867) J4N45_07015 PF00005 ABC transporter J4N45_07020 PF02687 FtsX-like permease family J4N45_07020 PF12704 MacB-like periplasmic core domain J4N45_07030 PF06965 Na+/H+ antiporter 1 J4N45_07035 PF00440 Bacterial regulatory proteins, tetR family J4N45_07040 PF09317 Domain of unknown function (DUF1974) J4N45_07040 PF02770 Acyl-CoA dehydrogenase, middle domain J4N45_07040 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J4N45_07040 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J4N45_07045 PF07055 Enoyl reductase FAD binding domain J4N45_07045 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase J4N45_07045 PF12241 Trans-2-enoyl-CoA reductase catalytic region J4N45_07050 PF06826 Predicted Permease Membrane Region J4N45_07050 PF02080 TrkA-C domain J4N45_07055 PF00462 Glutaredoxin J4N45_07060 PF00465 Iron-containing alcohol dehydrogenase J4N45_07060 PF00171 Aldehyde dehydrogenase family J4N45_07065 PF01380 SIS domain J4N45_07065 PF01418 Helix-turn-helix domain, rpiR family J4N45_07070 PF00282 Pyridoxal-dependent decarboxylase conserved domain J4N45_07080 PF03956 Lysine exporter LysO J4N45_07090 PF04994 TfoX C-terminal domain J4N45_07090 PF04993 TfoX N-terminal domain J4N45_07105 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N45_07105 PF00512 His Kinase A (phospho-acceptor) domain J4N45_07105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_07115 PF00266 Aminotransferase class-V J4N45_07120 PF00571 CBS domain J4N45_07120 PF03471 Transporter associated domain J4N45_07120 PF01595 Cyclin M transmembrane N-terminal domain J4N45_07125 PF00664 ABC transporter transmembrane region J4N45_07125 PF00005 ABC transporter J4N45_07130 PF00664 ABC transporter transmembrane region J4N45_07130 PF00005 ABC transporter J4N45_07135 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N45_07145 PF00266 Aminotransferase class-V J4N45_07155 PF02698 DUF218 domain J4N45_07165 PF00390 Malic enzyme, N-terminal domain J4N45_07165 PF03949 Malic enzyme, NAD binding domain J4N45_07170 PF00270 DEAD/DEAH box helicase J4N45_07170 PF11898 Domain of unknown function (DUF3418) J4N45_07170 PF04408 Helicase associated domain (HA2) J4N45_07170 PF00271 Helicase conserved C-terminal domain J4N45_07170 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold J4N45_07180 PF01259 SAICAR synthetase J4N45_07210 PF13183 4Fe-4S dicluster domain J4N45_07210 PF01565 FAD binding domain J4N45_07210 PF02913 FAD linked oxidases, C-terminal domain J4N45_07220 PF13006 Insertion element 4 transposase N-terminal J4N45_07220 PF01609 Transposase DDE domain J4N45_07250 PF01212 Beta-eliminating lyase J4N45_07255 PF03222 Tryptophan/tyrosine permease family J4N45_07260 PF01042 Endoribonuclease L-PSP J4N45_07270 PF04954 Siderophore-interacting protein J4N45_07270 PF08021 Siderophore-interacting FAD-binding domain J4N45_07275 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J4N45_07275 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J4N45_07280 PF00128 Alpha amylase, catalytic domain J4N45_07280 PF02903 Alpha amylase, N-terminal ig-like domain J4N45_07285 PF03466 LysR substrate binding domain J4N45_07285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_07305 PF13629 Pilus formation protein N terminal region J4N45_07305 PF00263 Bacterial type II and III secretion system protein J4N45_07305 PF04972 BON domain J4N45_07320 PF00437 Type II/IV secretion system protein J4N45_07365 PF02311 AraC-like ligand binding domain J4N45_07365 PF12833 Helix-turn-helix domain J4N45_07390 PF00263 Bacterial type II and III secretion system protein J4N45_07390 PF04972 BON domain J4N45_07390 PF13629 Pilus formation protein N terminal region J4N45_07420 PF00437 Type II/IV secretion system protein J4N45_07455 PF10414 Sirohaem synthase dimerisation region J4N45_07455 PF14824 Sirohaem biosynthesis protein central J4N45_07455 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N45_07460 PF01226 Formate/nitrite transporter J4N45_07465 PF13806 Rieske-like [2Fe-2S] domain J4N45_07470 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N45_07470 PF04324 BFD-like [2Fe-2S] binding domain J4N45_07470 PF18267 Rubredoxin NAD+ reductase C-terminal domain J4N45_07470 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain J4N45_07470 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J4N45_07480 PF03480 Bacterial extracellular solute-binding protein, family 7 J4N45_07490 PF00672 HAMP domain J4N45_07490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N45_07495 PF00990 Diguanylate cyclase, GGDEF domain J4N45_07505 PF07690 Major Facilitator Superfamily J4N45_07510 PF00924 Mechanosensitive ion channel J4N45_07510 PF05552 Conserved TM helix J4N45_07525 PF01554 MatE J4N45_07530 PF00999 Sodium/hydrogen exchanger family J4N45_07530 PF02254 TrkA-N domain J4N45_07535 PF02525 Flavodoxin-like fold J4N45_07550 PF03616 Sodium/glutamate symporter J4N45_07560 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain J4N45_07560 PF01409 tRNA synthetases class II core domain (F) J4N45_07565 PF03483 B3/4 domain J4N45_07565 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain J4N45_07565 PF01588 Putative tRNA binding domain J4N45_07565 PF03147 Ferredoxin-fold anticodon binding domain J4N45_07565 PF03484 tRNA synthetase B5 domain J4N45_07570 PF00216 Bacterial DNA-binding protein J4N45_07580 PF05724 Thiopurine S-methyltransferase (TPMT) J4N45_07585 PF00854 POT family J4N45_07590 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain J4N45_07590 PF00391 PEP-utilising enzyme, mobile domain J4N45_07590 PF02896 PEP-utilising enzyme, TIM barrel domain J4N45_07595 PF03618 Kinase/pyrophosphorylase J4N45_07605 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J4N45_07605 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J4N45_07615 PF00175 Oxidoreductase NAD-binding domain J4N45_07615 PF00970 Oxidoreductase FAD-binding domain J4N45_07625 PF02335 Cytochrome c552 J4N45_07630 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) J4N45_07630 PF13435 Cytochrome c554 and c-prime J4N45_07635 PF13247 4Fe-4S dicluster domain J4N45_07640 PF03916 Polysulphide reductase, NrfD J4N45_07645 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal J4N45_07645 PF01578 Cytochrome C assembly protein J4N45_07650 PF03918 Cytochrome C biogenesis protein J4N45_07670 PF13302 Acetyltransferase (GNAT) domain J4N45_07685 PF13533 Biotin-lipoyl like J4N45_07725 PF03466 LysR substrate binding domain J4N45_07725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_07730 PF03466 LysR substrate binding domain J4N45_07730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_07750 PF08220 DeoR-like helix-turn-helix domain J4N45_07750 PF00455 DeoR C terminal sensor domain J4N45_07755 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J4N45_07755 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J4N45_07775 PF04226 Transglycosylase associated protein J4N45_07780 PF00924 Mechanosensitive ion channel J4N45_07780 PF05552 Conserved TM helix J4N45_07790 PF00472 RF-1 domain J4N45_07795 PF00583 Acetyltransferase (GNAT) family J4N45_07805 PF01810 LysE type translocator J4N45_07825 PF03881 Fructosamine kinase J4N45_07835 PF00877 NlpC/P60 family J4N45_07840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N45_07840 PF00672 HAMP domain J4N45_07840 PF12729 Four helix bundle sensory module for signal transduction J4N45_07850 PF03942 DTW domain J4N45_07855 PF00480 ROK family J4N45_07865 PF08808 RES domain J4N45_07870 PF00781 Diacylglycerol kinase catalytic domain J4N45_07880 PF04055 Radical SAM superfamily J4N45_07885 PF06508 Queuosine biosynthesis protein QueC J4N45_07895 PF00691 OmpA family J4N45_07895 PF13488 Glycine zipper J4N45_07905 PF17785 PUA-like domain J4N45_07905 PF10672 S-adenosylmethionine-dependent methyltransferase J4N45_07910 PF00708 Acylphosphatase J4N45_07915 PF04358 DsrC like protein J4N45_07920 PF01027 Inhibitor of apoptosis-promoting Bax1 J4N45_07925 PF00005 ABC transporter J4N45_07930 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_07935 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_07940 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N45_07945 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N45_07945 PF10414 Sirohaem synthase dimerisation region J4N45_07945 PF14824 Sirohaem biosynthesis protein central J4N45_07950 PF04461 Protein of unknown function (DUF520) J4N45_07955 PF00793 DAHP synthetase I family J4N45_07965 PF00924 Mechanosensitive ion channel J4N45_07965 PF12794 Mechanosensitive ion channel inner membrane domain 1 J4N45_07965 PF12795 Mechanosensitive ion channel porin domain J4N45_07985 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF J4N45_07985 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF J4N45_07985 PF01189 16S rRNA methyltransferase RsmB/F J4N45_07990 PF02470 MlaD protein J4N45_07995 PF04403 Paraquat-inducible protein A J4N45_08000 PF00664 ABC transporter transmembrane region J4N45_08000 PF00005 ABC transporter J4N45_08005 PF13185 GAF domain J4N45_08010 PF04352 ProQ/FINO family J4N45_08010 PF17516 ProQ C-terminal domain J4N45_08015 PF00595 PDZ domain J4N45_08015 PF11818 C-terminal domain of tail specific protease (DUF3340) J4N45_08015 PF03572 Peptidase family S41 J4N45_08015 PF17804 Tail specific protease N-terminal domain J4N45_08025 PF11940 Domain of unknown function (DUF3458) Ig-like fold J4N45_08025 PF01433 Peptidase family M1 domain J4N45_08025 PF17432 Domain of unknown function (DUF3458_C) ARM repeats J4N45_08035 PF05088 Bacterial NAD-glutamate dehydrogenase J4N45_08040 PF01180 Dihydroorotate dehydrogenase J4N45_08045 PF07126 Cell-division protein ZapC J4N45_08050 PF01170 Putative RNA methylase family UPF0020 J4N45_08050 PF10672 S-adenosylmethionine-dependent methyltransferase J4N45_08050 PF02926 THUMP domain J4N45_08060 PF00005 ABC transporter J4N45_08060 PF16326 ABC transporter C-terminal domain J4N45_08060 PF12848 ABC transporter J4N45_08070 PF04957 Ribosome modulation factor J4N45_08075 PF07977 FabA-like domain J4N45_08080 PF13654 AAA domain J4N45_08080 PF05362 Lon protease (S16) C-terminal proteolytic domain J4N45_08085 PF06303 MatP N-terminal domain J4N45_08085 PF17414 MatP C-terminal ribbon-helix-helix domain J4N45_08100 PF00246 Zinc carboxypeptidase J4N45_08105 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N45_08120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_08120 PF00072 Response regulator receiver domain J4N45_08120 PF09308 LuxQ, periplasmic J4N45_08120 PF00512 His Kinase A (phospho-acceptor) domain J4N45_08125 PF02321 Outer membrane efflux protein J4N45_08130 PF00005 ABC transporter J4N45_08130 PF03412 Peptidase C39 family J4N45_08130 PF00664 ABC transporter transmembrane region J4N45_08135 PF00005 ABC transporter J4N45_08135 PF00664 ABC transporter transmembrane region J4N45_08145 PF00115 Cytochrome C and Quinol oxidase polypeptide I J4N45_08160 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J4N45_08160 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP J4N45_08170 PF00403 Heavy-metal-associated domain J4N45_08185 PF13545 Crp-like helix-turn-helix domain J4N45_08185 PF00027 Cyclic nucleotide-binding domain J4N45_08190 PF00582 Universal stress protein family J4N45_08205 PF01171 PP-loop family J4N45_08225 PF08402 TOBE domain J4N45_08225 PF00005 ABC transporter J4N45_08230 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_08235 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_08240 PF13416 Bacterial extracellular solute-binding protein J4N45_08245 PF13416 Bacterial extracellular solute-binding protein J4N45_08250 PF02146 Sir2 family J4N45_08255 PF00909 Ammonium Transporter Family J4N45_08270 PF13247 4Fe-4S dicluster domain J4N45_08275 PF12838 4Fe-4S dicluster domain J4N45_08275 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J4N45_08275 PF00384 Molybdopterin oxidoreductase J4N45_08275 PF01568 Molydopterin dinucleotide binding domain J4N45_08275 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region J4N45_08285 PF02613 Nitrate reductase delta subunit J4N45_08305 PF02634 FdhD/NarQ family J4N45_08315 PF06942 GlpM protein J4N45_08320 PF00005 ABC transporter J4N45_08320 PF12848 ABC transporter J4N45_08355 PF00512 His Kinase A (phospho-acceptor) domain J4N45_08355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_08355 PF00989 PAS fold J4N45_08360 PF02954 Bacterial regulatory protein, Fis family J4N45_08360 PF00072 Response regulator receiver domain J4N45_08360 PF00158 Sigma-54 interaction domain J4N45_08365 PF12849 PBP superfamily domain J4N45_08370 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_08375 PF08402 TOBE domain J4N45_08375 PF00005 ABC transporter J4N45_08380 PF12804 MobA-like NTP transferase domain J4N45_08385 PF00994 Probable molybdopterin binding domain J4N45_08385 PF03454 MoeA C-terminal region (domain IV) J4N45_08385 PF03453 MoeA N-terminal region (domain I and II) J4N45_08420 PF01810 LysE type translocator J4N45_08425 PF02074 Carboxypeptidase Taq (M32) metallopeptidase J4N45_08435 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold J4N45_08435 PF04408 Helicase associated domain (HA2) J4N45_08435 PF00271 Helicase conserved C-terminal domain J4N45_08435 PF00270 DEAD/DEAH box helicase J4N45_08435 PF11898 Domain of unknown function (DUF3418) J4N45_08465 PF00990 Diguanylate cyclase, GGDEF domain J4N45_08475 PF00012 Hsp70 protein J4N45_08480 PF00012 Hsp70 protein J4N45_08495 PF13396 Phospholipase_D-nuclease N-terminal J4N45_08495 PF13091 PLD-like domain J4N45_08505 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N45_08505 PF00529 HlyD membrane-fusion protein of T1SS J4N45_08510 PF12833 Helix-turn-helix domain J4N45_08520 PF02567 Phenazine biosynthesis-like protein J4N45_08535 PF01965 DJ-1/PfpI family J4N45_08535 PF12833 Helix-turn-helix domain J4N45_08545 PF13533 Biotin-lipoyl like J4N45_08555 PF00155 Aminotransferase class I and II J4N45_08560 PF06826 Predicted Permease Membrane Region J4N45_08560 PF02080 TrkA-C domain J4N45_08565 PF00155 Aminotransferase class I and II J4N45_08570 PF08543 Phosphomethylpyrimidine kinase J4N45_08590 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ J4N45_08595 PF09905 DNA-binding protein VF530 J4N45_08600 PF02694 Uncharacterised BCR, YnfA/UPF0060 family J4N45_08610 PF01966 HD domain J4N45_08620 PF00135 Carboxylesterase family J4N45_08625 PF00672 HAMP domain J4N45_08625 PF00072 Response regulator receiver domain J4N45_08625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_08625 PF01627 Hpt domain J4N45_08625 PF00512 His Kinase A (phospho-acceptor) domain J4N45_08625 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J4N45_08635 PF00999 Sodium/hydrogen exchanger family J4N45_08635 PF02254 TrkA-N domain J4N45_08655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_08655 PF03466 LysR substrate binding domain J4N45_08670 PF13091 PLD-like domain J4N45_08685 PF00990 Diguanylate cyclase, GGDEF domain J4N45_08685 PF17154 Gammaproteobacterial periplasmic sensor domain J4N45_08685 PF00563 EAL domain J4N45_08685 PF00672 HAMP domain J4N45_08695 PF08411 Exonuclease C-terminal J4N45_08695 PF00929 Exonuclease J4N45_08700 PF03788 LrgA family J4N45_08705 PF04172 LrgB-like family J4N45_08710 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region J4N45_08710 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J4N45_08715 PF02222 ATP-grasp domain J4N45_08730 PF01068 ATP dependent DNA ligase domain J4N45_08730 PF14743 DNA ligase OB-like domain J4N45_08745 PF01235 Sodium:alanine symporter family J4N45_08755 PF13533 Biotin-lipoyl like J4N45_08760 PF07690 Major Facilitator Superfamily J4N45_08780 PF13193 AMP-binding enzyme C-terminal domain J4N45_08780 PF00501 AMP-binding enzyme J4N45_08780 PF16177 Acetyl-coenzyme A synthetase N-terminus J4N45_08785 PF04303 PrpF protein J4N45_08790 PF00694 Aconitase C-terminal domain J4N45_08790 PF00330 Aconitase family (aconitate hydratase) J4N45_08795 PF00285 Citrate synthase, C-terminal domain J4N45_08820 PF01970 Tripartite tricarboxylate transporter TctA family J4N45_08825 PF00072 Response regulator receiver domain J4N45_08825 PF12431 Transcriptional regulator J4N45_08830 PF00989 PAS fold J4N45_08830 PF17203 Single cache domain 3 J4N45_08830 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain J4N45_08830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_08845 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N45_08860 PF00375 Sodium:dicarboxylate symporter family J4N45_08870 PF00561 alpha/beta hydrolase fold J4N45_08870 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus J4N45_08880 PF02803 Thiolase, C-terminal domain J4N45_08880 PF00108 Thiolase, N-terminal domain J4N45_08885 PF00106 short chain dehydrogenase J4N45_08895 PF12833 Helix-turn-helix domain J4N45_08900 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N45_08905 PF00923 Transaldolase/Fructose-6-phosphate aldolase J4N45_08910 PF04321 RmlD substrate binding domain J4N45_08915 PF04055 Radical SAM superfamily J4N45_08920 PF01228 Glycine radical J4N45_08920 PF02901 Pyruvate formate lyase-like J4N45_08925 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N45_08935 PF00391 PEP-utilising enzyme, mobile domain J4N45_08935 PF05524 PEP-utilising enzyme, N-terminal J4N45_08935 PF02896 PEP-utilising enzyme, TIM barrel domain J4N45_08935 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N45_08935 PF00381 PTS HPr component phosphorylation site J4N45_08940 PF03928 Haem-degrading J4N45_08945 PF13419 Haloacid dehalogenase-like hydrolase J4N45_08950 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J4N45_08950 PF00072 Response regulator receiver domain J4N45_08950 PF01627 Hpt domain J4N45_08950 PF00512 His Kinase A (phospho-acceptor) domain J4N45_08950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_08950 PF00672 HAMP domain J4N45_08975 PF08274 PhnA Zinc-Ribbon J4N45_08975 PF03831 PhnA domain J4N45_08980 PF08534 Redoxin J4N45_08980 PF00462 Glutaredoxin J4N45_09015 PF00583 Acetyltransferase (GNAT) family J4N45_09110 PF00795 Carbon-nitrogen hydrolase J4N45_09115 PF13302 Acetyltransferase (GNAT) domain J4N45_09135 PF13495 Phage integrase, N-terminal SAM-like domain J4N45_09135 PF00589 Phage integrase family J4N45_09140 PF00453 Ribosomal protein L20 J4N45_09145 PF01632 Ribosomal protein L35 J4N45_09150 PF05198 Translation initiation factor IF-3, N-terminal domain J4N45_09150 PF00707 Translation initiation factor IF-3, C-terminal domain J4N45_09155 PF02824 TGS domain J4N45_09155 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J4N45_09155 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J4N45_09155 PF03129 Anticodon binding domain J4N45_09205 PF00483 Nucleotidyl transferase J4N45_09210 PF01740 STAS domain J4N45_09215 PF13426 PAS domain J4N45_09215 PF07228 Stage II sporulation protein E (SpoIIE) J4N45_09235 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N45_09235 PF00529 HlyD membrane-fusion protein of T1SS J4N45_09240 PF00005 ABC transporter J4N45_09240 PF00664 ABC transporter transmembrane region J4N45_09255 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N45_09255 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J4N45_09270 PF03401 Tripartite tricarboxylate transporter family receptor J4N45_09280 PF01970 Tripartite tricarboxylate transporter TctA family J4N45_09295 PF00392 Bacterial regulatory proteins, gntR family J4N45_09295 PF07729 FCD domain J4N45_09300 PF03450 CO dehydrogenase flavoprotein C-terminal domain J4N45_09300 PF00941 FAD binding domain in molybdopterin dehydrogenase J4N45_09305 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase J4N45_09305 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain J4N45_09315 PF01979 Amidohydrolase family J4N45_09330 PF02558 Ketopantoate reductase PanE/ApbA J4N45_09330 PF08546 Ketopantoate reductase PanE/ApbA C terminal J4N45_09340 PF04115 Ureidoglycolate lyase J4N45_09345 PF03561 Allantoicase repeat J4N45_09350 PF09349 OHCU decarboxylase J4N45_09350 PF01014 Uricase J4N45_09360 PF00576 HIUase/Transthyretin family J4N45_09365 PF00860 Permease family J4N45_09370 PF00860 Permease family J4N45_09375 PF01979 Amidohydrolase family J4N45_09385 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J4N45_09385 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J4N45_09390 PF01261 Xylose isomerase-like TIM barrel J4N45_09395 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J4N45_09395 PF00205 Thiamine pyrophosphate enzyme, central domain J4N45_09395 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J4N45_09400 PF01274 Malate synthase J4N45_09410 PF01047 MarR family J4N45_09415 PF00892 EamA-like transporter family J4N45_09430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_09430 PF03466 LysR substrate binding domain J4N45_09455 PF00005 ABC transporter J4N45_09460 PF01032 FecCD transport family J4N45_09465 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family J4N45_09480 PF00069 Protein kinase domain J4N45_09480 PF03793 PASTA domain J4N45_09490 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase J4N45_09495 PF02654 Cobalamin-5-phosphate synthase J4N45_09500 PF02277 Phosphoribosyltransferase J4N45_09510 PF04539 Sigma-70 region 3 J4N45_09510 PF04545 Sigma-70, region 4 J4N45_09510 PF04542 Sigma-70 region 2 J4N45_09510 PF00140 Sigma-70 factor, region 1.2 J4N45_09520 PF00375 Sodium:dicarboxylate symporter family J4N45_09530 PF00248 Aldo/keto reductase family J4N45_09535 PF00248 Aldo/keto reductase family J4N45_09540 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J4N45_09540 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J4N45_09545 PF12833 Helix-turn-helix domain J4N45_09555 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_09600 PF18113 Rubredoxin binding C-terminal domain J4N45_09600 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N45_09605 PF00258 Flavodoxin J4N45_09605 PF00753 Metallo-beta-lactamase superfamily J4N45_09605 PF00301 Rubredoxin J4N45_09760 PF03895 YadA-like membrane anchor domain J4N45_09760 PF05658 Head domain of trimeric autotransporter adhesin J4N45_09760 PF05662 Coiled stalk of trimeric autotransporter adhesin J4N45_09800 PF00817 impB/mucB/samB family J4N45_09800 PF11799 impB/mucB/samB family C-terminal domain J4N45_09800 PF11798 IMS family HHH motif J4N45_09975 PF00580 UvrD/REP helicase N-terminal domain J4N45_09975 PF13361 UvrD-like helicase C-terminal domain J4N45_10040 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N45_10160 PF00145 C-5 cytosine-specific DNA methylase J4N45_10160 PF01381 Helix-turn-helix J4N45_10195 PF00717 Peptidase S24-like J4N45_10200 PF11799 impB/mucB/samB family C-terminal domain J4N45_10200 PF00817 impB/mucB/samB family J4N45_10200 PF13438 Domain of unknown function (DUF4113) J4N45_10355 PF01343 Peptidase family S49 J4N45_10525 PF01653 NAD-dependent DNA ligase adenylation domain J4N45_10525 PF00533 BRCA1 C Terminus (BRCT) domain J4N45_10525 PF03120 NAD-dependent DNA ligase OB-fold domain J4N45_10670 PF02311 AraC-like ligand binding domain J4N45_10670 PF12833 Helix-turn-helix domain J4N45_10715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_10715 PF00512 His Kinase A (phospho-acceptor) domain J4N45_10715 PF00672 HAMP domain J4N45_10720 PF00486 Transcriptional regulatory protein, C terminal J4N45_10720 PF00072 Response regulator receiver domain J4N45_10745 PF00403 Heavy-metal-associated domain J4N45_10750 PF13411 MerR HTH family regulatory protein J4N45_10760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_10760 PF00072 Response regulator receiver domain J4N45_10760 PF09308 LuxQ, periplasmic J4N45_10760 PF00512 His Kinase A (phospho-acceptor) domain J4N45_10780 PF00873 AcrB/AcrD/AcrF family J4N45_10880 PF14579 Helix-hairpin-helix motif J4N45_10880 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J4N45_10880 PF14480 DNA polymerase III polC-type N-terminus I J4N45_10880 PF07733 Bacterial DNA polymerase III alpha NTPase domain J4N45_10880 PF11490 DNA polymerase III polC-type N-terminus II J4N45_10880 PF00929 Exonuclease J4N45_10880 PF02811 PHP domain J4N45_11000 PF08775 ParB family J4N45_11000 PF02195 ParB-like nuclease domain J4N45_11035 PF04307 LexA-binding, inner membrane-associated putative hydrolase J4N45_11150 PF00772 DnaB-like helicase N terminal domain J4N45_11150 PF03796 DnaB-like helicase C terminal domain J4N45_11220 PF00271 Helicase conserved C-terminal domain J4N45_11220 PF04851 Type III restriction enzyme, res subunit J4N45_11305 PF18113 Rubredoxin binding C-terminal domain J4N45_11305 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N45_11310 PF00301 Rubredoxin J4N45_11310 PF00258 Flavodoxin J4N45_11310 PF00753 Metallo-beta-lactamase superfamily J4N45_11465 PF05662 Coiled stalk of trimeric autotransporter adhesin J4N45_11465 PF03895 YadA-like membrane anchor domain J4N45_11465 PF05658 Head domain of trimeric autotransporter adhesin J4N45_11505 PF11799 impB/mucB/samB family C-terminal domain J4N45_11505 PF11798 IMS family HHH motif J4N45_11505 PF00817 impB/mucB/samB family J4N45_11510 PF11799 impB/mucB/samB family C-terminal domain J4N45_11510 PF00817 impB/mucB/samB family J4N45_11515 PF03449 Transcription elongation factor, N-terminal J4N45_11515 PF01272 Transcription elongation factor, GreA/GreB, C-term J4N45_11525 PF00209 Sodium:neurotransmitter symporter family J4N45_11535 PF06786 Uncharacterised protein family (UPF0253) J4N45_11540 PF07687 Peptidase dimerisation domain J4N45_11540 PF01546 Peptidase family M20/M25/M40 J4N45_11545 PF00860 Permease family J4N45_11550 PF00156 Phosphoribosyl transferase domain J4N45_11555 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) J4N45_11560 PF07417 Sigma factor-binding transcriptional regulator Crl J4N45_11565 PF01472 PUA domain J4N45_11565 PF00696 Amino acid kinase family J4N45_11570 PF00171 Aldehyde dehydrogenase family J4N45_11575 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 J4N45_11600 PF04287 tRNA pseudouridine synthase C J4N45_11605 PF00849 RNA pseudouridylate synthase J4N45_11610 PF03477 ATP cone domain J4N45_11615 PF01872 RibD C-terminal domain J4N45_11615 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J4N45_11620 PF00677 Lumazine binding domain J4N45_11625 PF00925 GTP cyclohydrolase II J4N45_11625 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase J4N45_11630 PF00885 6,7-dimethyl-8-ribityllumazine synthase J4N45_11635 PF01029 NusB family J4N45_11640 PF02769 AIR synthase related protein, C-terminal domain J4N45_11640 PF00586 AIR synthase related protein, N-terminal domain J4N45_11645 PF04608 Phosphatidylglycerophosphatase A J4N45_11650 PF01553 Acyltransferase J4N45_11665 PF00378 Enoyl-CoA hydratase/isomerase J4N45_11670 PF07969 Amidohydrolase family J4N45_11675 PF01769 Divalent cation transporter J4N45_11675 PF00571 CBS domain J4N45_11675 PF03448 MgtE intracellular N domain J4N45_11710 PF01638 HxlR-like helix-turn-helix J4N45_11720 PF01047 MarR family J4N45_11730 PF09335 SNARE associated Golgi protein J4N45_11735 PF01098 Cell cycle protein J4N45_11750 PF01266 FAD dependent oxidoreductase J4N45_11760 PF07690 Major Facilitator Superfamily J4N45_11765 PF02028 BCCT, betaine/carnitine/choline family transporter J4N45_11770 PF13361 UvrD-like helicase C-terminal domain J4N45_11770 PF00580 UvrD/REP helicase N-terminal domain J4N45_11770 PF12462 DNA helicase IV / RNA helicase N terminal J4N45_11810 PF01584 CheW-like domain J4N45_11810 PF00072 Response regulator receiver domain J4N45_11815 PF01739 CheR methyltransferase, SAM binding domain J4N45_11815 PF03705 CheR methyltransferase, all-alpha domain J4N45_11820 PF00460 Flagella basal body rod protein J4N45_11825 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N45_11825 PF00460 Flagella basal body rod protein J4N45_11830 PF13860 FlgD Ig-like domain J4N45_11830 PF03963 Flagellar hook capping protein - N-terminal region J4N45_11830 PF13861 FlgD Tudor-like domain J4N45_11835 PF00460 Flagella basal body rod protein J4N45_11835 PF07559 Flagellar basal body protein FlaE J4N45_11835 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N45_11840 PF00460 Flagella basal body rod protein J4N45_11840 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N45_11845 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N45_11845 PF00460 Flagella basal body rod protein J4N45_11850 PF02107 Flagellar L-ring protein J4N45_11855 PF02119 Flagellar P-ring protein J4N45_11860 PF10135 Rod binding protein J4N45_11860 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase J4N45_11865 PF07196 Flagellin hook IN motif J4N45_11865 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N45_11875 PF00700 Bacterial flagellin C-terminal helical region J4N45_11875 PF07196 Flagellin hook IN motif J4N45_11875 PF00669 Bacterial flagellin N-terminal helical region J4N45_11880 PF00700 Bacterial flagellin C-terminal helical region J4N45_11880 PF07196 Flagellin hook IN motif J4N45_11880 PF00669 Bacterial flagellin N-terminal helical region J4N45_11885 PF00669 Bacterial flagellin N-terminal helical region J4N45_11885 PF00700 Bacterial flagellin C-terminal helical region J4N45_11885 PF07196 Flagellin hook IN motif J4N45_11890 PF03646 FlaG protein J4N45_11895 PF07196 Flagellin hook IN motif J4N45_11895 PF02465 Flagellar hook-associated protein 2 N-terminus J4N45_11895 PF07195 Flagellar hook-associated protein 2 C-terminus J4N45_11905 PF02561 Flagellar protein FliS J4N45_11910 PF00158 Sigma-54 interaction domain J4N45_11910 PF02954 Bacterial regulatory protein, Fis family J4N45_11910 PF06490 Flagellar regulatory protein FleQ J4N45_11915 PF13188 PAS domain J4N45_11915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_11915 PF00512 His Kinase A (phospho-acceptor) domain J4N45_11920 PF00158 Sigma-54 interaction domain J4N45_11920 PF00072 Response regulator receiver domain J4N45_11920 PF02954 Bacterial regulatory protein, Fis family J4N45_11925 PF02049 Flagellar hook-basal body complex protein FliE J4N45_11930 PF08345 Flagellar M-ring protein C-terminal J4N45_11930 PF01514 Secretory protein of YscJ/FliF family J4N45_11935 PF14841 FliG middle domain J4N45_11935 PF14842 FliG N-terminal domain J4N45_11935 PF01706 FliG C-terminal domain J4N45_11945 PF18269 T3SS EscN ATPase C-terminal domain J4N45_11945 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N45_11965 PF02154 Flagellar motor switch protein FliM J4N45_11965 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J4N45_11970 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J4N45_11975 PF04347 Flagellar biosynthesis protein, FliO J4N45_11980 PF00813 FliP family J4N45_11985 PF01313 Bacterial export proteins, family 3 J4N45_11990 PF01311 Bacterial export proteins, family 1 J4N45_11995 PF01312 FlhB HrpN YscU SpaS Family J4N45_12000 PF00771 FHIPEP family J4N45_12005 PF00448 SRP54-type protein, GTPase domain J4N45_12010 PF10609 NUBPL iron-transfer P-loop NTPase J4N45_12015 PF04542 Sigma-70 region 2 J4N45_12015 PF04545 Sigma-70, region 4 J4N45_12015 PF04539 Sigma-70 region 3 J4N45_12020 PF00072 Response regulator receiver domain J4N45_12025 PF04344 Chemotaxis phosphatase, CheZ J4N45_12030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_12030 PF01627 Hpt domain J4N45_12030 PF01584 CheW-like domain J4N45_12030 PF00072 Response regulator receiver domain J4N45_12030 PF02895 Signal transducing histidine kinase, homodimeric domain J4N45_12035 PF00072 Response regulator receiver domain J4N45_12035 PF01339 CheB methylesterase J4N45_12040 PF13614 AAA domain J4N45_12050 PF01584 CheW-like domain J4N45_12060 PF00005 ABC transporter J4N45_12065 PF03379 CcmB protein J4N45_12070 PF01578 Cytochrome C assembly protein J4N45_12075 PF04995 Heme exporter protein D (CcmD) J4N45_12080 PF03100 CcmE J4N45_12085 PF01578 Cytochrome C assembly protein J4N45_12085 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal J4N45_12090 PF08534 Redoxin J4N45_12095 PF03918 Cytochrome C biogenesis protein J4N45_12100 PF03918 Cytochrome C biogenesis protein J4N45_12105 PF04333 MlaA lipoprotein J4N45_12110 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J4N45_12115 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J4N45_12125 PF04542 Sigma-70 region 2 J4N45_12125 PF08281 Sigma-70, region 4 J4N45_12130 PF02803 Thiolase, C-terminal domain J4N45_12130 PF00108 Thiolase, N-terminal domain J4N45_12135 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J4N45_12135 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J4N45_12135 PF00378 Enoyl-CoA hydratase/isomerase J4N45_12140 PF00675 Insulinase (Peptidase family M16) J4N45_12140 PF16187 Middle or third domain of peptidase_M16 J4N45_12140 PF05193 Peptidase M16 inactive domain J4N45_12145 PF00300 Histidine phosphatase superfamily (branch 1) J4N45_12150 PF01713 Smr domain J4N45_12155 PF05175 Methyltransferase small domain J4N45_12160 PF01264 Chorismate synthase J4N45_12165 PF03144 Elongation factor Tu domain 2 J4N45_12165 PF00009 Elongation factor Tu GTP binding domain J4N45_12165 PF03764 Elongation factor G, domain IV J4N45_12165 PF14492 Elongation Factor G, domain II J4N45_12165 PF00679 Elongation factor G C-terminus J4N45_12175 PF03458 UPF0126 domain J4N45_12180 PF04315 Elongation factor P hydroxylase J4N45_12185 PF08891 YfcL protein J4N45_12195 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J4N45_12205 PF00072 Response regulator receiver domain J4N45_12205 PF00196 Bacterial regulatory proteins, luxR family J4N45_12210 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N45_12215 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_12220 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_12220 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N45_12225 PF00005 ABC transporter J4N45_12225 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N45_12230 PF00005 ABC transporter J4N45_12230 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N45_12235 PF13409 Glutathione S-transferase, N-terminal domain J4N45_12265 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N45_12270 PF00873 AcrB/AcrD/AcrF family J4N45_12280 PF13726 Na+-H+ antiporter family J4N45_12280 PF03553 Na+/H+ antiporter family J4N45_12285 PF00929 Exonuclease J4N45_12290 PF18393 MotY N-terminal domain J4N45_12290 PF00691 OmpA family J4N45_12300 PF00106 short chain dehydrogenase J4N45_12305 PF02311 AraC-like ligand binding domain J4N45_12305 PF12833 Helix-turn-helix domain J4N45_12315 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N45_12320 PF00730 HhH-GPD superfamily base excision DNA repair protein J4N45_12320 PF00633 Helix-hairpin-helix motif J4N45_12320 PF10576 Iron-sulfur binding domain of endonuclease III J4N45_12325 PF02508 Rnf-Nqr subunit, membrane protein J4N45_12330 PF04205 FMN-binding domain J4N45_12335 PF03116 NQR2, RnfD, RnfE family J4N45_12340 PF13375 RnfC Barrel sandwich hybrid domain J4N45_12340 PF10531 SLBB domain J4N45_12340 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit J4N45_12340 PF12838 4Fe-4S dicluster domain J4N45_12345 PF04060 Putative Fe-S cluster J4N45_12350 PF02508 Rnf-Nqr subunit, membrane protein J4N45_12360 PF02151 UvrB/uvrC motif J4N45_12360 PF00271 Helicase conserved C-terminal domain J4N45_12360 PF17757 UvrB interaction domain J4N45_12360 PF04851 Type III restriction enzyme, res subunit J4N45_12360 PF12344 Ultra-violet resistance protein B J4N45_12365 PF02954 Bacterial regulatory protein, Fis family J4N45_12365 PF00072 Response regulator receiver domain J4N45_12365 PF00158 Sigma-54 interaction domain J4N45_12370 PF01627 Hpt domain J4N45_12375 PF01933 Uncharacterised protein family UPF0052 J4N45_12380 PF06463 Molybdenum Cofactor Synthesis C J4N45_12380 PF04055 Radical SAM superfamily J4N45_12385 PF00994 Probable molybdopterin binding domain J4N45_12390 PF01967 MoaC family J4N45_12395 PF02597 ThiS family J4N45_12400 PF02391 MoaE protein J4N45_12415 PF00722 Glycosyl hydrolases family 16 J4N45_12420 PF01568 Molydopterin dinucleotide binding domain J4N45_12420 PF00384 Molybdopterin oxidoreductase J4N45_12420 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J4N45_12425 PF14824 Sirohaem biosynthesis protein central J4N45_12425 PF10414 Sirohaem synthase dimerisation region J4N45_12425 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N45_12430 PF00591 Glycosyl transferase family, a/b domain J4N45_12430 PF02885 Glycosyl transferase family, helical bundle domain J4N45_12435 PF08376 Nitrate and nitrite sensing J4N45_12435 PF03861 ANTAR domain J4N45_12440 PF00005 ABC transporter J4N45_12445 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_12450 PF00005 ABC transporter J4N45_12455 PF04324 BFD-like [2Fe-2S] binding domain J4N45_12455 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J4N45_12455 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain J4N45_12455 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N45_12455 PF13806 Rieske-like [2Fe-2S] domain J4N45_12455 PF18267 Rubredoxin NAD+ reductase C-terminal domain J4N45_12470 PF01743 Poly A polymerase head domain J4N45_12470 PF01368 DHH family J4N45_12470 PF02272 DHHA1 domain J4N45_12470 PF00571 CBS domain J4N45_12475 PF01554 MatE J4N45_12480 PF00403 Heavy-metal-associated domain J4N45_12485 PF01048 Phosphorylase superfamily J4N45_12490 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain J4N45_12490 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J4N45_12495 PF01515 Phosphate acetyl/butaryl transferase J4N45_12500 PF00871 Acetokinase family J4N45_12505 PF00171 Aldehyde dehydrogenase family J4N45_12510 PF03466 LysR substrate binding domain J4N45_12510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_12525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N45_12525 PF00672 HAMP domain J4N45_12530 PF01230 HIT domain J4N45_12545 PF08139 Prokaryotic membrane lipoprotein lipid attachment site J4N45_12545 PF13036 Peptidoglycan-synthase activator LpoB J4N45_12555 PF05728 Uncharacterised protein family (UPF0227) J4N45_12560 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N45_12570 PF07023 Protein of unknown function (DUF1315) J4N45_12575 PF01740 STAS domain J4N45_12575 PF00916 Sulfate permease family J4N45_12580 PF10150 Ribonuclease E/G family J4N45_12580 PF12111 Polyribonucleotide phosphorylase C terminal J4N45_12580 PF00575 S1 RNA binding domain J4N45_12585 PF00849 RNA pseudouridylate synthase J4N45_12585 PF01479 S4 domain J4N45_12590 PF02545 Maf-like protein J4N45_12595 PF02620 Large ribosomal RNA subunit accumulation protein YceD J4N45_12600 PF01783 Ribosomal L32p protein family J4N45_12605 PF02504 Fatty acid synthesis protein J4N45_12610 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J4N45_12610 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J4N45_12615 PF00698 Acyl transferase domain J4N45_12625 PF00550 Phosphopantetheine attachment site J4N45_12630 PF00109 Beta-ketoacyl synthase, N-terminal domain J4N45_12630 PF02801 Beta-ketoacyl synthase, C-terminal domain J4N45_12635 PF01063 Amino-transferase class IV J4N45_12640 PF02618 YceG-like family J4N45_12645 PF02223 Thymidylate kinase J4N45_12650 PF09115 DNA polymerase III, delta subunit, C terminal J4N45_12655 PF01026 TatD related DNase J4N45_12660 PF02378 Phosphotransferase system, EIIC J4N45_12660 PF00367 phosphotransferase system, EIIB J4N45_12665 PF13302 Acetyltransferase (GNAT) domain J4N45_12675 PF02559 CarD-like/TRCF domain J4N45_12675 PF00270 DEAD/DEAH box helicase J4N45_12675 PF00271 Helicase conserved C-terminal domain J4N45_12675 PF03461 TRCF domain J4N45_12675 PF17757 UvrB interaction domain J4N45_12685 PF12704 MacB-like periplasmic core domain J4N45_12685 PF02687 FtsX-like permease family J4N45_12690 PF00005 ABC transporter J4N45_12695 PF12704 MacB-like periplasmic core domain J4N45_12695 PF02687 FtsX-like permease family J4N45_12705 PF13567 Domain of unknown function (DUF4131) J4N45_12705 PF00753 Metallo-beta-lactamase superfamily J4N45_12705 PF03772 Competence protein J4N45_12710 PF00005 ABC transporter J4N45_12710 PF00664 ABC transporter transmembrane region J4N45_12715 PF02606 Tetraacyldisaccharide-1-P 4'-kinase J4N45_12720 PF03966 Trm112p-like protein J4N45_12725 PF02348 Cytidylyltransferase J4N45_12740 PF00849 RNA pseudouridylate synthase J4N45_12745 PF03971 Monomeric isocitrate dehydrogenase J4N45_12750 PF00313 'Cold-shock' DNA-binding domain J4N45_12755 PF02617 ATP-dependent Clp protease adaptor protein ClpS J4N45_12760 PF10431 C-terminal, D2-small domain, of ClpB protein J4N45_12760 PF02861 Clp amino terminal domain, pathogenicity island component J4N45_12760 PF07724 AAA domain (Cdc48 subfamily) J4N45_12760 PF17871 AAA lid domain J4N45_12760 PF00004 ATPase family associated with various cellular activities (AAA) J4N45_12765 PF01176 Translation initiation factor 1A / IF-1 J4N45_12770 PF04377 Arginine-tRNA-protein transferase, C terminus J4N45_12770 PF04376 Arginine-tRNA-protein transferase, N terminus J4N45_12775 PF03588 Leucyl/phenylalanyl-tRNA protein transferase J4N45_12780 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J4N45_12785 PF10692 Protein of unknown function (DUF2498) J4N45_12790 PF08272 Topoisomerase I zinc-ribbon-like J4N45_12790 PF01131 DNA topoisomerase J4N45_12790 PF01751 Toprim domain J4N45_12790 PF01396 Topoisomerase DNA binding C4 zinc finger J4N45_12800 PF01435 Peptidase family M48 J4N45_12845 PF00206 Lyase J4N45_12845 PF08328 Adenylosuccinate lyase C-terminal J4N45_12850 PF04356 Protein of unknown function (DUF489) J4N45_12860 PF00294 pfkB family carbohydrate kinase J4N45_12865 PF00816 H-NS histone family J4N45_12870 PF03553 Na+/H+ antiporter family J4N45_12875 PF01634 ATP phosphoribosyltransferase J4N45_12875 PF08029 HisG, C-terminal domain J4N45_12880 PF00815 Histidinol dehydrogenase J4N45_12885 PF00155 Aminotransferase class I and II J4N45_12890 PF08645 Polynucleotide kinase 3 phosphatase J4N45_12890 PF00475 Imidazoleglycerol-phosphate dehydratase J4N45_12895 PF00117 Glutamine amidotransferase class-I J4N45_12900 PF00977 Histidine biosynthesis protein J4N45_12905 PF00977 Histidine biosynthesis protein J4N45_12910 PF01502 Phosphoribosyl-AMP cyclohydrolase J4N45_12910 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase J4N45_12925 PF01734 Patatin-like phospholipase J4N45_12930 PF00480 ROK family J4N45_12935 PF01584 CheW-like domain J4N45_12935 PF00072 Response regulator receiver domain J4N45_12940 PF01336 OB-fold nucleic acid binding domain J4N45_12940 PF02811 PHP domain J4N45_12940 PF07733 Bacterial DNA polymerase III alpha NTPase domain J4N45_12940 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J4N45_12940 PF14579 Helix-hairpin-helix motif J4N45_12955 PF01734 Patatin-like phospholipase J4N45_12960 PF07690 Major Facilitator Superfamily J4N45_12965 PF03009 Glycerophosphoryl diester phosphodiesterase family J4N45_12970 PF00106 short chain dehydrogenase J4N45_12975 PF01343 Peptidase family S49 J4N45_12975 PF08496 Peptidase family S49 N-terminal J4N45_12990 PF00155 Aminotransferase class I and II J4N45_12995 PF01497 Periplasmic binding protein J4N45_12995 PF12833 Helix-turn-helix domain J4N45_13005 PF04293 SpoVR like protein J4N45_13010 PF04285 Protein of unknown function (DUF444) J4N45_13015 PF08298 PrkA AAA domain J4N45_13015 PF06798 PrkA serine protein kinase C-terminal domain J4N45_13020 PF03887 YfbU domain J4N45_13025 PF04055 Radical SAM superfamily J4N45_13030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N45_13030 PF02743 Cache domain J4N45_13030 PF00672 HAMP domain J4N45_13040 PF01228 Glycine radical J4N45_13040 PF02901 Pyruvate formate lyase-like J4N45_13055 PF00005 ABC transporter J4N45_13060 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N45_13065 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_13070 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_13085 PF03372 Endonuclease/Exonuclease/phosphatase family J4N45_13090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N45_13090 PF00672 HAMP domain J4N45_13095 PF08443 RimK-like ATP-grasp domain J4N45_13095 PF18030 RimK PreATP-grasp domain J4N45_13110 PF08003 Protein of unknown function (DUF1698) J4N45_13115 PF13649 Methyltransferase domain J4N45_13120 PF01904 Protein of unknown function DUF72 J4N45_13125 PF01336 OB-fold nucleic acid binding domain J4N45_13125 PF02938 GAD domain J4N45_13125 PF00152 tRNA synthetases class II (D, K and N) J4N45_13130 PF01709 Transcriptional regulator J4N45_13135 PF02075 Crossover junction endodeoxyribonuclease RuvC J4N45_13140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N45_13140 PF08447 PAS fold J4N45_13140 PF13426 PAS domain J4N45_13145 PF07499 RuvA, C-terminal domain J4N45_13145 PF01330 RuvA N terminal domain J4N45_13150 PF05496 Holliday junction DNA helicase RuvB P-loop domain J4N45_13150 PF17864 RuvB AAA lid domain J4N45_13150 PF05491 RuvB C-terminal winged helix domain J4N45_13155 PF01654 Cytochrome bd terminal oxidase subunit I J4N45_13160 PF02322 Cytochrome bd terminal oxidase subunit II J4N45_13165 PF08173 Membrane bound YbgT-like protein J4N45_13175 PF03061 Thioesterase superfamily J4N45_13180 PF01618 MotA/TolQ/ExbB proton channel family J4N45_13185 PF02472 Biopolymer transport protein ExbD/TolR J4N45_13195 PF07676 WD40-like Beta Propeller Repeat J4N45_13195 PF04052 TolB amino-terminal domain J4N45_13200 PF00691 OmpA family J4N45_13205 PF16331 TolA binding protein trimerisation J4N45_13205 PF13174 Tetratricopeptide repeat J4N45_13210 PF02445 Quinolinate synthetase A protein J4N45_13235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_13235 PF00512 His Kinase A (phospho-acceptor) domain J4N45_13235 PF09308 LuxQ, periplasmic J4N45_13235 PF00072 Response regulator receiver domain J4N45_13240 PF06610 L-alanine exporter J4N45_13275 PF01119 DNA mismatch repair protein, C-terminal domain J4N45_13275 PF08676 MutL C terminal dimerisation domain J4N45_13295 PF00849 RNA pseudouridylate synthase J4N45_13330 PF12344 Ultra-violet resistance protein B J4N45_13330 PF17757 UvrB interaction domain J4N45_13330 PF04851 Type III restriction enzyme, res subunit J4N45_13330 PF02151 UvrB/uvrC motif J4N45_13330 PF00271 Helicase conserved C-terminal domain J4N45_13340 PF13476 AAA domain J4N45_13350 PF00266 Aminotransferase class-V J4N45_13370 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term J4N45_13370 PF12833 Helix-turn-helix domain J4N45_13375 PF00171 Aldehyde dehydrogenase family J4N45_13380 PF00501 AMP-binding enzyme J4N45_13380 PF13193 AMP-binding enzyme C-terminal domain J4N45_13385 PF00732 GMC oxidoreductase J4N45_13385 PF05199 GMC oxidoreductase J4N45_13400 PF04193 PQ loop repeat J4N45_13405 PF02056 Family 4 glycosyl hydrolase J4N45_13405 PF11975 Family 4 glycosyl hydrolase C-terminal domain J4N45_13410 PF00367 phosphotransferase system, EIIB J4N45_13410 PF02378 Phosphotransferase system, EIIC J4N45_13415 PF00392 Bacterial regulatory proteins, gntR family J4N45_13415 PF07702 UTRA domain J4N45_13425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_13425 PF03466 LysR substrate binding domain J4N45_13430 PF01717 Cobalamin-independent synthase, Catalytic domain J4N45_13430 PF08267 Cobalamin-independent synthase, N-terminal domain J4N45_13440 PF03795 YCII-related domain J4N45_13445 PF03061 Thioesterase superfamily J4N45_13450 PF04279 Intracellular septation protein A J4N45_13455 PF07504 Fungalysin/Thermolysin Propeptide Motif J4N45_13455 PF03413 Peptidase propeptide and YPEB domain J4N45_13455 PF01447 Thermolysin metallopeptidase, catalytic domain J4N45_13455 PF02868 Thermolysin metallopeptidase, alpha-helical domain J4N45_13455 PF04151 Bacterial pre-peptidase C-terminal domain J4N45_13460 PF00375 Sodium:dicarboxylate symporter family J4N45_13465 PF00290 Tryptophan synthase alpha chain J4N45_13470 PF00291 Pyridoxal-phosphate dependent enzyme J4N45_13475 PF00218 Indole-3-glycerol phosphate synthase J4N45_13475 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase J4N45_13480 PF00591 Glycosyl transferase family, a/b domain J4N45_13480 PF02885 Glycosyl transferase family, helical bundle domain J4N45_13485 PF00117 Glutamine amidotransferase class-I J4N45_13490 PF04715 Anthranilate synthase component I, N terminal region J4N45_13490 PF00425 chorismate binding enzyme J4N45_13495 PF02811 PHP domain J4N45_13500 PF01300 Telomere recombination J4N45_13505 PF01479 S4 domain J4N45_13505 PF00849 RNA pseudouridylate synthase J4N45_13510 PF03458 UPF0126 domain J4N45_13520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_13520 PF03466 LysR substrate binding domain J4N45_13525 PF00005 ABC transporter J4N45_13530 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N45_13530 PF00005 ABC transporter J4N45_13535 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N45_13535 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_13540 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_13545 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N45_13550 PF02954 Bacterial regulatory protein, Fis family J4N45_13550 PF00158 Sigma-54 interaction domain J4N45_13555 PF04012 PspA/IM30 family J4N45_13560 PF06667 Phage shock protein B J4N45_13575 PF04794 YdjC-like protein J4N45_13585 PF13533 Biotin-lipoyl like J4N45_13590 PF00873 AcrB/AcrD/AcrF family J4N45_13595 PF13673 Acetyltransferase (GNAT) domain J4N45_13595 PF13302 Acetyltransferase (GNAT) domain J4N45_13595 PF03352 Methyladenine glycosylase J4N45_13595 PF00117 Glutamine amidotransferase class-I J4N45_13595 PF00958 GMP synthase C terminal domain J4N45_13600 PF01557 Fumarylacetoacetate (FAA) hydrolase family J4N45_13615 PF00171 Aldehyde dehydrogenase family J4N45_13620 PF00465 Iron-containing alcohol dehydrogenase J4N45_13635 PF00884 Sulfatase J4N45_13640 PF13186 Iron-sulfur cluster-binding domain J4N45_13640 PF04055 Radical SAM superfamily J4N45_13655 PF00884 Sulfatase J4N45_13660 PF16925 Tetracyclin repressor-like, C-terminal domain J4N45_13660 PF00440 Bacterial regulatory proteins, tetR family J4N45_13665 PF00994 Probable molybdopterin binding domain J4N45_13680 PF04116 Fatty acid hydroxylase superfamily J4N45_13685 PF00690 Cation transporter/ATPase, N-terminus J4N45_13685 PF00689 Cation transporting ATPase, C-terminus J4N45_13700 PF00893 Small Multidrug Resistance protein J4N45_13705 PF00893 Small Multidrug Resistance protein J4N45_13725 PF03976 Polyphosphate kinase 2 (PPK2) J4N45_13735 PF13091 PLD-like domain J4N45_13745 PF00175 Oxidoreductase NAD-binding domain J4N45_13745 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N45_13745 PF00970 Oxidoreductase FAD-binding domain J4N45_13750 PF00268 Ribonucleotide reductase, small chain J4N45_13755 PF03477 ATP cone domain J4N45_13755 PF02867 Ribonucleotide reductase, barrel domain J4N45_13755 PF00317 Ribonucleotide reductase, all-alpha domain J4N45_13765 PF03989 DNA gyrase C-terminal domain, beta-propeller J4N45_13765 PF00521 DNA gyrase/topoisomerase IV, subunit A J4N45_13770 PF00005 ABC transporter J4N45_13770 PF00664 ABC transporter transmembrane region J4N45_13775 PF00664 ABC transporter transmembrane region J4N45_13775 PF00005 ABC transporter J4N45_13795 PF01053 Cys/Met metabolism PLP-dependent enzyme J4N45_13800 PF13091 PLD-like domain J4N45_13800 PF13396 Phospholipase_D-nuclease N-terminal J4N45_13805 PF00209 Sodium:neurotransmitter symporter family J4N45_13810 PF00849 RNA pseudouridylate synthase J4N45_13830 PF06945 Protein of unknown function (DUF1289) J4N45_13845 PF04397 LytTr DNA-binding domain J4N45_13845 PF00072 Response regulator receiver domain J4N45_13850 PF00990 Diguanylate cyclase, GGDEF domain J4N45_13850 PF05230 MASE2 domain J4N45_13865 PF00860 Permease family J4N45_13875 PF00005 ABC transporter J4N45_13875 PF17912 MalK OB fold domain J4N45_13880 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_13885 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_13890 PF13416 Bacterial extracellular solute-binding protein J4N45_13895 PF03009 Glycerophosphoryl diester phosphodiesterase family J4N45_13900 PF08220 DeoR-like helix-turn-helix domain J4N45_13900 PF00455 DeoR C terminal sensor domain J4N45_13905 PF11849 Domain of unknown function (DUF3369) J4N45_13910 PF00294 pfkB family carbohydrate kinase J4N45_13915 PF04227 Indigoidine synthase A like protein J4N45_13925 PF04400 (Na+)-NQR maturation NqrM J4N45_13935 PF13419 Haloacid dehalogenase-like hydrolase J4N45_13940 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J4N45_13940 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J4N45_13945 PF01266 FAD dependent oxidoreductase J4N45_13945 PF16901 C-terminal domain of alpha-glycerophosphate oxidase J4N45_13960 PF00158 Sigma-54 interaction domain J4N45_13960 PF18024 Helix-turn-helix domain J4N45_13965 PF13302 Acetyltransferase (GNAT) domain J4N45_14000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_14000 PF03466 LysR substrate binding domain J4N45_14005 PF02525 Flavodoxin-like fold J4N45_14010 PF03313 Serine dehydratase alpha chain J4N45_14010 PF03315 Serine dehydratase beta chain J4N45_14015 PF00474 Sodium:solute symporter family J4N45_14035 PF00356 Bacterial regulatory proteins, lacI family J4N45_14040 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain J4N45_14040 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain J4N45_14045 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain J4N45_14045 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J4N45_14060 PF00248 Aldo/keto reductase family J4N45_14065 PF01844 HNH endonuclease J4N45_14070 PF01066 CDP-alcohol phosphatidyltransferase J4N45_14075 PF00005 ABC transporter J4N45_14080 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_14085 PF13416 Bacterial extracellular solute-binding protein J4N45_14100 PF00563 EAL domain J4N45_14100 PF00990 Diguanylate cyclase, GGDEF domain J4N45_14100 PF08447 PAS fold J4N45_14100 PF08448 PAS fold J4N45_14105 PF07943 Penicillin-binding protein 5, C-terminal domain J4N45_14105 PF00768 D-alanyl-D-alanine carboxypeptidase J4N45_14110 PF01863 Protein of unknown function DUF45 J4N45_14115 PF05971 RNA methyltransferase J4N45_14125 PF00106 short chain dehydrogenase J4N45_14145 PF12833 Helix-turn-helix domain J4N45_14145 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term J4N45_14150 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_14160 PF00005 ABC transporter J4N45_14175 PF00501 AMP-binding enzyme J4N45_14175 PF13193 AMP-binding enzyme C-terminal domain J4N45_14190 PF04204 Homoserine O-succinyltransferase J4N45_14210 PF07687 Peptidase dimerisation domain J4N45_14210 PF01546 Peptidase family M20/M25/M40 J4N45_14220 PF03466 LysR substrate binding domain J4N45_14220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_14225 PF03009 Glycerophosphoryl diester phosphodiesterase family J4N45_14230 PF00753 Metallo-beta-lactamase superfamily J4N45_14235 PF08212 Lipocalin-like domain J4N45_14265 PF02264 LamB porin J4N45_14280 PF11606 Family 31 carbohydrate binding protein J4N45_14290 PF00672 HAMP domain J4N45_14290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N45_14295 PF01547 Bacterial extracellular solute-binding protein J4N45_14300 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_14305 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_14310 PF17912 MalK OB fold domain J4N45_14310 PF00005 ABC transporter J4N45_14320 PF13407 Periplasmic binding protein domain J4N45_14325 PF00005 ABC transporter J4N45_14330 PF02653 Branched-chain amino acid transport system / permease component J4N45_14340 PF04616 Glycosyl hydrolases family 43 J4N45_14340 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain J4N45_14355 PF12833 Helix-turn-helix domain J4N45_14360 PF14310 Fibronectin type III-like domain J4N45_14360 PF00933 Glycosyl hydrolase family 3 N terminal domain J4N45_14360 PF01915 Glycosyl hydrolase family 3 C-terminal domain J4N45_14365 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain J4N45_14365 PF04616 Glycosyl hydrolases family 43 J4N45_14385 PF11798 IMS family HHH motif J4N45_14385 PF00817 impB/mucB/samB family J4N45_14385 PF11799 impB/mucB/samB family C-terminal domain J4N45_14425 PF05662 Coiled stalk of trimeric autotransporter adhesin J4N45_14425 PF03895 YadA-like membrane anchor domain J4N45_14425 PF05658 Head domain of trimeric autotransporter adhesin J4N45_14580 PF00301 Rubredoxin J4N45_14580 PF00753 Metallo-beta-lactamase superfamily J4N45_14580 PF00258 Flavodoxin J4N45_14585 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N45_14585 PF18113 Rubredoxin binding C-terminal domain J4N45_14640 PF02424 ApbE family J4N45_14645 PF00970 Oxidoreductase FAD-binding domain J4N45_14645 PF00175 Oxidoreductase NAD-binding domain J4N45_14645 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N45_14650 PF02508 Rnf-Nqr subunit, membrane protein J4N45_14655 PF02508 Rnf-Nqr subunit, membrane protein J4N45_14660 PF04205 FMN-binding domain J4N45_14665 PF03116 NQR2, RnfD, RnfE family J4N45_14670 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) J4N45_14670 PF11973 NQRA C-terminal domain J4N45_14675 PF01722 BolA-like protein J4N45_14680 PF05175 Methyltransferase small domain J4N45_14690 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J4N45_14695 PF07690 Major Facilitator Superfamily J4N45_14705 PF04545 Sigma-70, region 4 J4N45_14705 PF04542 Sigma-70 region 2 J4N45_14715 PF03502 Nucleoside-specific channel-forming protein, Tsx J4N45_14720 PF08546 Ketopantoate reductase PanE/ApbA C terminal J4N45_14720 PF02558 Ketopantoate reductase PanE/ApbA J4N45_14725 PF01965 DJ-1/PfpI family J4N45_14730 PF00266 Aminotransferase class-V J4N45_14735 PF02657 Fe-S metabolism associated domain J4N45_14740 PF00899 ThiF family J4N45_14745 PF03562 MltA specific insert domain J4N45_14745 PF06725 3D domain J4N45_14755 PF00696 Amino acid kinase family J4N45_14755 PF00583 Acetyltransferase (GNAT) family J4N45_14765 PF13538 UvrD-like helicase C-terminal domain J4N45_14770 PF13361 UvrD-like helicase C-terminal domain J4N45_14770 PF00580 UvrD/REP helicase N-terminal domain J4N45_14770 PF12705 PD-(D/E)XK nuclease superfamily J4N45_14775 PF17946 RecC C-terminal domain J4N45_14785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_14785 PF03466 LysR substrate binding domain J4N45_14790 PF07130 YebG protein J4N45_14795 PF01914 MarC family integral membrane protein J4N45_14800 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle J4N45_14800 PF14602 Hexapeptide repeat of succinyl-transferase J4N45_14805 PF02357 Transcription termination factor nusG J4N45_14810 PF00854 POT family J4N45_14815 PF00762 Ferrochelatase J4N45_14820 PF05191 Adenylate kinase, active site lid J4N45_14825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_14825 PF00183 Hsp90 protein J4N45_14830 PF00486 Transcriptional regulatory protein, C terminal J4N45_14835 PF17323 Trans-membrane regulatory protein ToxS J4N45_14845 PF00669 Bacterial flagellin N-terminal helical region J4N45_14845 PF07196 Flagellin hook IN motif J4N45_14845 PF00700 Bacterial flagellin C-terminal helical region J4N45_14850 PF07196 Flagellin hook IN motif J4N45_14850 PF00700 Bacterial flagellin C-terminal helical region J4N45_14850 PF00669 Bacterial flagellin N-terminal helical region J4N45_14855 PF04261 Dyp-type peroxidase family J4N45_14860 PF11143 Protein of unknown function (DUF2919) J4N45_14880 PF03960 ArsC family J4N45_14885 PF01546 Peptidase family M20/M25/M40 J4N45_14885 PF07687 Peptidase dimerisation domain J4N45_14890 PF02557 D-alanyl-D-alanine carboxypeptidase J4N45_14900 PF06804 NlpB/DapX lipoprotein J4N45_14905 PF00701 Dihydrodipicolinate synthetase family J4N45_14910 PF01842 ACT domain J4N45_14915 PF00578 AhpC/TSA family J4N45_14920 PF01594 AI-2E family transporter J4N45_14930 PF01435 Peptidase family M48 J4N45_14930 PF13181 Tetratricopeptide repeat J4N45_14935 PF03960 ArsC family J4N45_14940 PF03358 NADPH-dependent FMN reductase J4N45_14955 PF00860 Permease family J4N45_14965 PF02769 AIR synthase related protein, C-terminal domain J4N45_14965 PF00586 AIR synthase related protein, N-terminal domain J4N45_14970 PF00551 Formyl transferase J4N45_14975 PF13230 Glutamine amidotransferases class-II J4N45_14980 PF13580 SIS domain J4N45_14985 PF02770 Acyl-CoA dehydrogenase, middle domain J4N45_14985 PF09317 Domain of unknown function (DUF1974) J4N45_14985 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J4N45_14985 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J4N45_14995 PF00929 Exonuclease J4N45_15000 PF00075 RNase H J4N45_15005 PF08241 Methyltransferase domain J4N45_15010 PF16123 Hydroxyacylglutathione hydrolase C-terminus J4N45_15010 PF00753 Metallo-beta-lactamase superfamily J4N45_15015 PF01476 LysM domain J4N45_15015 PF01464 Transglycosylase SLT domain J4N45_15020 PF02568 Thiamine biosynthesis protein (ThiI) J4N45_15020 PF02926 THUMP domain J4N45_15025 PF13677 Membrane MotB of proton-channel complex MotA/MotB J4N45_15025 PF00691 OmpA family J4N45_15030 PF01618 MotA/TolQ/ExbB proton channel family J4N45_15035 PF02609 Exonuclease VII small subunit J4N45_15040 PF00348 Polyprenyl synthetase J4N45_15045 PF02779 Transketolase, pyrimidine binding domain J4N45_15045 PF02780 Transketolase, C-terminal domain J4N45_15045 PF13292 1-deoxy-D-xylulose-5-phosphate synthase J4N45_15050 PF00749 tRNA synthetases class I (E and Q), catalytic domain J4N45_15055 PF00403 Heavy-metal-associated domain J4N45_15085 PF13411 MerR HTH family regulatory protein J4N45_15095 PF13609 Gram-negative porin J4N45_15100 PF01609 Transposase DDE domain J4N45_15100 PF13006 Insertion element 4 transposase N-terminal J4N45_15105 PF00533 BRCA1 C Terminus (BRCT) domain J4N45_15105 PF01653 NAD-dependent DNA ligase adenylation domain J4N45_15105 PF12826 Helix-hairpin-helix motif J4N45_15105 PF03119 NAD-dependent DNA ligase C4 zinc finger domain J4N45_15105 PF03120 NAD-dependent DNA ligase OB-fold domain J4N45_15110 PF04354 ZipA, C-terminal FtsZ-binding domain J4N45_15120 PF07295 Zinc-ribbon containing domain J4N45_15125 PF08264 Anticodon-binding domain of tRNA J4N45_15125 PF13603 Leucyl-tRNA synthetase, Domain 2 J4N45_15125 PF00133 tRNA synthetases class I (I, L, M and V) J4N45_15130 PF04390 Lipopolysaccharide-assembly J4N45_15135 PF06144 DNA polymerase III, delta subunit J4N45_15135 PF14840 Processivity clamp loader gamma complex DNA pol III C-term J4N45_15145 PF02590 Predicted SPOUT methyltransferase J4N45_15150 PF03717 Penicillin-binding Protein dimerisation domain J4N45_15150 PF00905 Penicillin binding protein transpeptidase domain J4N45_15155 PF01098 Cell cycle protein J4N45_15160 PF03330 Lytic transglycolase J4N45_15160 PF05036 Sporulation related domain J4N45_15165 PF07943 Penicillin-binding protein 5, C-terminal domain J4N45_15165 PF00768 D-alanyl-D-alanine carboxypeptidase J4N45_15170 PF04359 Protein of unknown function (DUF493) J4N45_15175 PF03099 Biotin/lipoate A/B protein ligase family J4N45_15180 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family J4N45_15180 PF04055 Radical SAM superfamily J4N45_15190 PF00464 Serine hydroxymethyltransferase J4N45_15200 PF00128 Alpha amylase, catalytic domain J4N45_15200 PF16657 Maltogenic Amylase, C-terminal domain J4N45_15205 PF02378 Phosphotransferase system, EIIC J4N45_15205 PF00367 phosphotransferase system, EIIB J4N45_15210 PF00356 Bacterial regulatory proteins, lacI family J4N45_15225 PF09383 NIL domain J4N45_15225 PF00005 ABC transporter J4N45_15230 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_15235 PF03180 NLPA lipoprotein J4N45_15240 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) J4N45_15245 PF07348 Syd protein (SUKH-2) J4N45_15250 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term J4N45_15250 PF14489 QueF-like protein J4N45_15260 PF00990 Diguanylate cyclase, GGDEF domain J4N45_15265 PF11892 Domain of unknown function (DUF3412) J4N45_15265 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases J4N45_15265 PF03641 Possible lysine decarboxylase J4N45_15270 PF01367 5'-3' exonuclease, C-terminal SAM fold J4N45_15270 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J4N45_15275 PF01728 FtsJ-like methyltransferase J4N45_15275 PF18125 RlmM ferredoxin-like domain J4N45_15280 PF04241 Protein of unknown function (DUF423) J4N45_15290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_15290 PF03466 LysR substrate binding domain J4N45_15295 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J4N45_15295 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J4N45_15295 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J4N45_15295 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J4N45_15300 PF03925 SeqA protein C-terminal domain J4N45_15300 PF17206 SeqA protein N-terminal domain J4N45_15305 PF12697 Alpha/beta hydrolase family J4N45_15315 PF00258 Flavodoxin J4N45_15320 PF01118 Semialdehyde dehydrogenase, NAD binding domain J4N45_15320 PF02774 Semialdehyde dehydrogenase, dimerisation domain J4N45_15325 PF01475 Ferric uptake regulator family J4N45_15330 PF00749 tRNA synthetases class I (E and Q), catalytic domain J4N45_15330 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain J4N45_15335 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 J4N45_15335 PF00367 phosphotransferase system, EIIB J4N45_15335 PF02378 Phosphotransferase system, EIIC J4N45_15340 PF01979 Amidohydrolase family J4N45_15345 PF01047 MarR family J4N45_15345 PF00480 ROK family J4N45_15350 PF00999 Sodium/hydrogen exchanger family J4N45_15350 PF02254 TrkA-N domain J4N45_15355 PF00733 Asparagine synthase J4N45_15355 PF13537 Glutamine amidotransferase domain J4N45_15365 PF01554 MatE J4N45_15370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_15370 PF03466 LysR substrate binding domain J4N45_15375 PF02417 Chromate transporter J4N45_15380 PF00072 Response regulator receiver domain J4N45_15385 PF00501 AMP-binding enzyme J4N45_15395 PF03466 LysR substrate binding domain J4N45_15395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_15400 PF00679 Elongation factor G C-terminus J4N45_15400 PF14492 Elongation Factor G, domain II J4N45_15400 PF03764 Elongation factor G, domain IV J4N45_15400 PF00009 Elongation factor Tu GTP binding domain J4N45_15400 PF03144 Elongation factor Tu domain 2 J4N45_15405 PF18073 Rubredoxin metal binding domain J4N45_15415 PF18429 Domain of unknown function (DUF5609) J4N45_15425 PF01048 Phosphorylase superfamily J4N45_15430 PF01676 Metalloenzyme superfamily J4N45_15435 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain J4N45_15435 PF00591 Glycosyl transferase family, a/b domain J4N45_15435 PF02885 Glycosyl transferase family, helical bundle domain J4N45_15440 PF01791 DeoC/LacD family aldolase J4N45_15445 PF01773 Na+ dependent nucleoside transporter N-terminus J4N45_15445 PF07662 Na+ dependent nucleoside transporter C-terminus J4N45_15445 PF07670 Nucleoside recognition J4N45_15450 PF01026 TatD related DNase J4N45_15460 PF02608 ABC transporter substrate-binding protein PnrA-like J4N45_15465 PF00005 ABC transporter J4N45_15470 PF02653 Branched-chain amino acid transport system / permease component J4N45_15475 PF02653 Branched-chain amino acid transport system / permease component J4N45_15480 PF16658 Class II release factor RF3, C-terminal domain J4N45_15480 PF00009 Elongation factor Tu GTP binding domain J4N45_15480 PF03144 Elongation factor Tu domain 2 J4N45_15515 PF00583 Acetyltransferase (GNAT) family J4N45_15530 PF02036 SCP-2 sterol transfer family J4N45_15535 PF00563 EAL domain J4N45_15535 PF03707 Bacterial signalling protein N terminal repeat J4N45_15535 PF00990 Diguanylate cyclase, GGDEF domain J4N45_15540 PF01136 Peptidase family U32 J4N45_15545 PF01136 Peptidase family U32 J4N45_15560 PF13181 Tetratricopeptide repeat J4N45_15560 PF07719 Tetratricopeptide repeat J4N45_15565 PF00575 S1 RNA binding domain J4N45_15565 PF03725 3' exoribonuclease family, domain 2 J4N45_15565 PF01138 3' exoribonuclease family, domain 1 J4N45_15565 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain J4N45_15565 PF00013 KH domain J4N45_15570 PF00312 Ribosomal protein S15 J4N45_15575 PF09157 Pseudouridine synthase II TruB, C-terminal J4N45_15575 PF16198 tRNA pseudouridylate synthase B C-terminal domain J4N45_15575 PF01509 TruB family pseudouridylate synthase (N terminal domain) J4N45_15580 PF02033 Ribosome-binding factor A J4N45_15585 PF04760 Translation initiation factor IF-2, N-terminal region J4N45_15585 PF08364 Bacterial translation initiation factor IF-2 associated region J4N45_15585 PF00009 Elongation factor Tu GTP binding domain J4N45_15585 PF11987 Translation-initiation factor 2 J4N45_15590 PF13184 NusA-like KH domain J4N45_15590 PF08529 NusA N-terminal domain J4N45_15590 PF00575 S1 RNA binding domain J4N45_15595 PF02576 RimP N-terminal domain J4N45_15595 PF17384 RimP C-terminal SH3 domain J4N45_15610 PF03840 Preprotein translocase SecG subunit J4N45_15615 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J4N45_15615 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J4N45_15615 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J4N45_15615 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J4N45_15620 PF00809 Pterin binding enzyme J4N45_15625 PF00004 ATPase family associated with various cellular activities (AAA) J4N45_15625 PF17862 AAA+ lid domain J4N45_15625 PF06480 FtsH Extracellular J4N45_15625 PF01434 Peptidase family M41 J4N45_15630 PF01728 FtsJ-like methyltransferase J4N45_15635 PF01985 CRS1 / YhbY (CRM) domain J4N45_15640 PF01272 Transcription elongation factor, GreA/GreB, C-term J4N45_15640 PF03449 Transcription elongation factor, N-terminal J4N45_15645 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family J4N45_15655 PF02401 LytB protein J4N45_15660 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N45_15665 PF01252 Signal peptidase (SPase) II J4N45_15670 PF00133 tRNA synthetases class I (I, L, M and V) J4N45_15670 PF06827 Zinc finger found in FPG and IleRS J4N45_15670 PF08264 Anticodon-binding domain of tRNA J4N45_15675 PF06574 FAD synthetase J4N45_15675 PF01687 Riboflavin kinase J4N45_15680 PF03023 Lipid II flippase MurJ J4N45_15685 PF01649 Ribosomal protein S20 J4N45_15690 PF01022 Bacterial regulatory protein, arsR family J4N45_15695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_15695 PF03466 LysR substrate binding domain J4N45_15700 PF02690 Na+/Pi-cotransporter J4N45_15720 PF00303 Thymidylate synthase J4N45_15725 PF01790 Prolipoprotein diacylglyceryl transferase J4N45_15730 PF01925 Sulfite exporter TauE/SafE J4N45_15735 PF01590 GAF domain J4N45_15735 PF05524 PEP-utilising enzyme, N-terminal J4N45_15735 PF00391 PEP-utilising enzyme, mobile domain J4N45_15735 PF02896 PEP-utilising enzyme, TIM barrel domain J4N45_15740 PF00293 NUDIX domain J4N45_15745 PF02976 DNA mismatch repair enzyme MutH J4N45_15755 PF00248 Aldo/keto reductase family J4N45_15765 PF00158 Sigma-54 interaction domain J4N45_15765 PF02954 Bacterial regulatory protein, Fis family J4N45_15765 PF00072 Response regulator receiver domain J4N45_15770 PF01336 OB-fold nucleic acid binding domain J4N45_15770 PF00152 tRNA synthetases class II (D, K and N) J4N45_15780 PF01368 DHH family J4N45_15780 PF17768 RecJ OB domain J4N45_15780 PF02272 DHHA1 domain J4N45_15785 PF13098 Thioredoxin-like domain J4N45_15785 PF10411 Disulfide bond isomerase protein N-terminus J4N45_15790 PF02899 Phage integrase, N-terminal SAM-like domain J4N45_15790 PF00589 Phage integrase family J4N45_15795 PF00258 Flavodoxin J4N45_15800 PF05525 Branched-chain amino acid transport protein J4N45_15805 PF05175 Methyltransferase small domain J4N45_15810 PF00270 DEAD/DEAH box helicase J4N45_15810 PF00271 Helicase conserved C-terminal domain J4N45_15815 PF03883 Peroxide stress protein YaaA J4N45_15820 PF01235 Sodium:alanine symporter family J4N45_15835 PF01618 MotA/TolQ/ExbB proton channel family J4N45_15840 PF01618 MotA/TolQ/ExbB proton channel family J4N45_15845 PF02472 Biopolymer transport protein ExbD/TolR J4N45_15850 PF03544 Gram-negative bacterial TonB protein C-terminal J4N45_15865 PF03167 Uracil DNA glycosylase superfamily J4N45_15870 PF01261 Xylose isomerase-like TIM barrel J4N45_15875 PF01228 Glycine radical J4N45_15880 PF01479 S4 domain J4N45_15880 PF00579 tRNA synthetases class I (W and Y) J4N45_15885 PF01476 LysM domain J4N45_15885 PF08525 Opacity-associated protein A N-terminal motif J4N45_15885 PF01551 Peptidase family M23 J4N45_15890 PF00501 AMP-binding enzyme J4N45_15895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_15895 PF03466 LysR substrate binding domain J4N45_15905 PF01569 PAP2 superfamily J4N45_15925 PF00682 HMGL-like J4N45_15925 PF08502 LeuA allosteric (dimerisation) domain J4N45_15930 PF00180 Isocitrate/isopropylmalate dehydrogenase J4N45_15935 PF00330 Aconitase family (aconitate hydratase) J4N45_15940 PF00694 Aconitase C-terminal domain J4N45_15955 PF05099 Tellurite resistance protein TerB J4N45_15955 PF00226 DnaJ domain J4N45_15960 PF04453 LPS transport system D J4N45_15960 PF03968 OstA-like protein J4N45_15965 PF00639 PPIC-type PPIASE domain J4N45_15965 PF09312 SurA N-terminal domain J4N45_15970 PF04166 Pyridoxal phosphate biosynthetic protein PdxA J4N45_15975 PF00398 Ribosomal RNA adenine dimethylase J4N45_15980 PF04379 ApaG domain J4N45_15985 PF00149 Calcineurin-like phosphoesterase J4N45_15990 PF00186 Dihydrofolate reductase J4N45_15995 PF12821 Threonine/Serine exporter, ThrE J4N45_16000 PF06738 Putative threonine/serine exporter J4N45_16005 PF01926 50S ribosome-binding GTPase J4N45_16005 PF01018 GTP1/OBG J4N45_16010 PF01016 Ribosomal L27 protein J4N45_16015 PF00829 Ribosomal prokaryotic L21 protein J4N45_16020 PF00348 Polyprenyl synthetase J4N45_16030 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain J4N45_16030 PF00056 lactate/malate dehydrogenase, NAD binding domain J4N45_16035 PF02863 Arginine repressor, C-terminal domain J4N45_16035 PF01316 Arginine repressor, DNA binding domain J4N45_16040 PF16868 NMT1-like family J4N45_16050 PF00582 Universal stress protein family J4N45_16055 PF01609 Transposase DDE domain J4N45_16055 PF13006 Insertion element 4 transposase N-terminal J4N45_16060 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N45_16060 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J4N45_16065 PF00849 RNA pseudouridylate synthase J4N45_16070 PF00271 Helicase conserved C-terminal domain J4N45_16070 PF18337 RapA N-terminal Tudor like domain J4N45_16070 PF18339 RapA N-terminal Tudor like domain 1 J4N45_16070 PF12137 RNA polymerase recycling family C-terminal J4N45_16070 PF00176 SNF2 family N-terminal domain J4N45_16075 PF13638 PIN domain J4N45_16075 PF02562 PhoH-like protein J4N45_16080 PF01523 Putative modulator of DNA gyrase J4N45_16085 PF00795 Carbon-nitrogen hydrolase J4N45_16095 PF00575 S1 RNA binding domain J4N45_16095 PF10150 Ribonuclease E/G family J4N45_16100 PF02545 Maf-like protein J4N45_16105 PF04093 rod shape-determining protein MreD J4N45_16110 PF04085 rod shape-determining protein MreC J4N45_16125 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) J4N45_16130 PF01270 Glycosyl hydrolases family 8 J4N45_16135 PF03170 Bacterial cellulose synthase subunit J4N45_16140 PF03552 Cellulose synthase J4N45_16140 PF00535 Glycosyl transferase family 2 J4N45_16140 PF07238 PilZ domain J4N45_16165 PF11658 Cellulose biosynthesis protein BcsG J4N45_16170 PF00990 Diguanylate cyclase, GGDEF domain J4N45_16170 PF00563 EAL domain J4N45_16170 PF17157 Gammaproteobacterial periplasmic sensor domain J4N45_16175 PF00436 Single-strand binding protein family J4N45_16180 PF00196 Bacterial regulatory proteins, luxR family J4N45_16185 PF00483 Nucleotidyl transferase J4N45_16190 PF17760 UvrA interaction domain J4N45_16190 PF00005 ABC transporter J4N45_16190 PF17755 UvrA DNA-binding domain J4N45_16205 PF13401 AAA domain J4N45_16205 PF01471 Putative peptidoglycan binding domain J4N45_16210 PF01966 HD domain J4N45_16210 PF01743 Poly A polymerase head domain J4N45_16210 PF12627 Probable RNA and SrmB- binding site of polymerase A J4N45_16215 PF02673 Bacitracin resistance protein BacA J4N45_16220 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J4N45_16225 PF02152 Dihydroneopterin aldolase J4N45_16230 PF02660 Glycerol-3-phosphate acyltransferase J4N45_16235 PF00561 alpha/beta hydrolase fold J4N45_16240 PF00814 Glycoprotease family J4N45_16245 PF01165 Ribosomal protein S21 J4N45_16250 PF09424 Yqey-like protein J4N45_16255 PF10410 DnaB-helicase binding domain of primase J4N45_16255 PF08278 DNA primase DnaG DnaB-binding J4N45_16255 PF01807 CHC2 zinc finger J4N45_16255 PF08275 DNA primase catalytic core, N-terminal domain J4N45_16260 PF04542 Sigma-70 region 2 J4N45_16260 PF04539 Sigma-70 region 3 J4N45_16260 PF04545 Sigma-70, region 4 J4N45_16260 PF04546 Sigma-70, non-essential region J4N45_16260 PF03979 Sigma-70 factor, region 1.1 J4N45_16260 PF00140 Sigma-70 factor, region 1.2 J4N45_16270 PF01156 Inosine-uridine preferring nucleoside hydrolase J4N45_16275 PF00990 Diguanylate cyclase, GGDEF domain J4N45_16290 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N45_16295 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_16300 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_16300 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N45_16305 PF00005 ABC transporter J4N45_16305 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N45_16310 PF00005 ABC transporter J4N45_16310 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N45_16320 PF01869 BadF/BadG/BcrA/BcrD ATPase family J4N45_16325 PF00728 Glycosyl hydrolase family 20, catalytic domain J4N45_16325 PF02838 Glycosyl hydrolase family 20, domain 2 J4N45_16330 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain J4N45_16330 PF06165 Glycosyltransferase family 36 J4N45_16335 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J4N45_16335 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J4N45_16335 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J4N45_16335 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J4N45_16340 PF00005 ABC transporter J4N45_16340 PF08402 TOBE domain J4N45_16345 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_16350 PF13416 Bacterial extracellular solute-binding protein J4N45_16355 PF00909 Ammonium Transporter Family J4N45_16360 PF00543 Nitrogen regulatory protein P-II J4N45_16370 PF13556 PucR C-terminal helix-turn-helix domain J4N45_16370 PF17853 GGDEF-like domain J4N45_16370 PF05651 Putative sugar diacid recognition J4N45_16375 PF02447 GntP family permease J4N45_16380 PF02595 Glycerate kinase family J4N45_16385 PF00491 Arginase family J4N45_16390 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term J4N45_16390 PF12833 Helix-turn-helix domain J4N45_16405 PF03952 Enolase, N-terminal domain J4N45_16405 PF00113 Enolase, C-terminal TIM barrel domain J4N45_16410 PF00117 Glutamine amidotransferase class-I J4N45_16410 PF06418 CTP synthase N-terminus J4N45_16415 PF03819 MazG nucleotide pyrophosphohydrolase domain J4N45_16420 PF02824 TGS domain J4N45_16420 PF04607 Region found in RelA / SpoT proteins J4N45_16420 PF13291 ACT domain J4N45_16425 PF05958 tRNA (Uracil-5-)-methyltransferase J4N45_16425 PF01938 TRAM domain J4N45_16430 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J4N45_16430 PF00072 Response regulator receiver domain J4N45_16430 PF01627 Hpt domain J4N45_16430 PF00512 His Kinase A (phospho-acceptor) domain J4N45_16430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_16430 PF00672 HAMP domain J4N45_16435 PF01648 4'-phosphopantetheinyl transferase superfamily J4N45_16440 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ J4N45_16445 PF02565 Recombination protein O C terminal J4N45_16445 PF11967 Recombination protein O N terminal J4N45_16450 PF01926 50S ribosome-binding GTPase J4N45_16450 PF07650 KH domain J4N45_16455 PF00035 Double-stranded RNA binding motif J4N45_16455 PF14622 Ribonuclease-III-like J4N45_16460 PF10502 Signal peptidase, peptidase S26 J4N45_16465 PF03144 Elongation factor Tu domain 2 J4N45_16465 PF06421 GTP-binding protein LepA C-terminus J4N45_16465 PF00679 Elongation factor G C-terminus J4N45_16465 PF00009 Elongation factor Tu GTP binding domain J4N45_16475 PF03888 MucB/RseB N-terminal domain J4N45_16475 PF17188 MucB/RseB C-terminal domain J4N45_16480 PF03873 Anti sigma-E protein RseA, C-terminal domain J4N45_16480 PF03872 Anti sigma-E protein RseA, N-terminal domain J4N45_16485 PF08281 Sigma-70, region 4 J4N45_16485 PF04542 Sigma-70 region 2 J4N45_16490 PF02910 Fumarate reductase flavoprotein C-term J4N45_16490 PF00890 FAD binding domain J4N45_16495 PF03937 Flavinator of succinate dehydrogenase J4N45_16515 PF01494 FAD binding domain J4N45_16520 PF01494 FAD binding domain J4N45_16525 PF03695 Uncharacterised protein family (UPF0149) J4N45_16530 PF05164 Cell division protein ZapA J4N45_16540 PF01812 5-formyltetrahydrofolate cyclo-ligase family J4N45_16545 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) J4N45_16550 PF01842 ACT domain J4N45_16550 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N45_16550 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J4N45_16560 PF03466 LysR substrate binding domain J4N45_16560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_16565 PF01810 LysE type translocator J4N45_16575 PF00924 Mechanosensitive ion channel J4N45_16575 PF05552 Conserved TM helix J4N45_16580 PF01116 Fructose-bisphosphate aldolase class-II J4N45_16585 PF00162 Phosphoglycerate kinase J4N45_16590 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J4N45_16590 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J4N45_16600 PF02779 Transketolase, pyrimidine binding domain J4N45_16600 PF02780 Transketolase, C-terminal domain J4N45_16600 PF00456 Transketolase, thiamine diphosphate binding domain J4N45_16605 PF00438 S-adenosylmethionine synthetase, N-terminal domain J4N45_16605 PF02773 S-adenosylmethionine synthetase, C-terminal domain J4N45_16605 PF02772 S-adenosylmethionine synthetase, central domain J4N45_16615 PF10263 SprT-like family J4N45_16615 PF17283 SprT-like zinc ribbon domain J4N45_16620 PF04231 Endonuclease I J4N45_16625 PF04452 RNA methyltransferase J4N45_16630 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain J4N45_16630 PF02951 Prokaryotic glutathione synthetase, N-terminal domain J4N45_16635 PF02622 Uncharacterized ACR, COG1678 J4N45_16640 PF03652 Holliday junction resolvase J4N45_16645 PF02664 S-Ribosylhomocysteinase (LuxS) J4N45_16650 PF04262 Glutamate-cysteine ligase J4N45_16655 PF00675 Insulinase (Peptidase family M16) J4N45_16655 PF05193 Peptidase M16 inactive domain J4N45_16660 PF09335 SNARE associated Golgi protein J4N45_16665 PF08240 Alcohol dehydrogenase GroES-like domain J4N45_16665 PF00107 Zinc-binding dehydrogenase J4N45_16670 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit J4N45_16675 PF00364 Biotin-requiring enzyme J4N45_16675 PF00682 HMGL-like J4N45_16675 PF02436 Conserved carboxylase domain J4N45_16680 PF04277 Oxaloacetate decarboxylase, gamma chain J4N45_16725 PF02599 Global regulator protein family J4N45_16730 PF00696 Amino acid kinase family J4N45_16730 PF13840 ACT domain J4N45_16730 PF01842 ACT domain J4N45_16735 PF01411 tRNA synthetases class II (A) J4N45_16735 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J4N45_16735 PF02272 DHHA1 domain J4N45_16740 PF02631 RecX family J4N45_16745 PF00154 recA bacterial DNA recombination protein J4N45_16750 PF02464 Competence-damaged protein J4N45_16755 PF05192 MutS domain III J4N45_16755 PF01624 MutS domain I J4N45_16755 PF05188 MutS domain II J4N45_16755 PF05190 MutS family domain IV J4N45_16755 PF00488 MutS domain V J4N45_16765 PF06877 Regulator of ribonuclease activity B J4N45_16775 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J4N45_16775 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J4N45_16780 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J4N45_16780 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J4N45_16785 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain J4N45_16785 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain J4N45_16790 PF01042 Endoribonuclease L-PSP J4N45_16795 PF01553 Acyltransferase J4N45_16800 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J4N45_16805 PF01722 BolA-like protein J4N45_16815 PF05494 MlaC protein J4N45_16820 PF02470 MlaD protein J4N45_16825 PF02405 Permease MlaE J4N45_16830 PF00005 ABC transporter J4N45_16835 PF01699 Sodium/calcium exchanger protein J4N45_16840 PF01380 SIS domain J4N45_16840 PF00571 CBS domain J4N45_16855 PF03968 OstA-like protein J4N45_16860 PF12399 Branched-chain amino acid ATP-binding cassette transporter J4N45_16860 PF00005 ABC transporter J4N45_16865 PF00309 Sigma-54 factor, Activator interacting domain (AID) J4N45_16865 PF04963 Sigma-54 factor, core binding domain J4N45_16865 PF04552 Sigma-54, DNA binding domain J4N45_16870 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein J4N45_16875 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N45_16880 PF03668 P-loop ATPase protein family J4N45_16885 PF00381 PTS HPr component phosphorylation site J4N45_16890 PF01769 Divalent cation transporter J4N45_16890 PF03448 MgtE intracellular N domain J4N45_16890 PF00571 CBS domain J4N45_16895 PF03739 Lipopolysaccharide export system permease LptF/LptG J4N45_16900 PF03739 Lipopolysaccharide export system permease LptF/LptG J4N45_16905 PF02789 Cytosol aminopeptidase family, N-terminal domain J4N45_16905 PF00883 Cytosol aminopeptidase family, catalytic domain J4N45_16910 PF04364 DNA polymerase III chi subunit, HolC J4N45_16915 PF10458 Valyl tRNA synthetase tRNA binding arm J4N45_16915 PF08264 Anticodon-binding domain of tRNA J4N45_16915 PF00133 tRNA synthetases class I (I, L, M and V) J4N45_16920 PF00266 Aminotransferase class-V J4N45_16925 PF00696 Amino acid kinase family J4N45_16925 PF01842 ACT domain J4N45_16975 PF01966 HD domain J4N45_17000 PF00342 Phosphoglucose isomerase J4N45_17005 PF01894 Uncharacterised protein family UPF0047 J4N45_17010 PF01168 Alanine racemase, N-terminal domain J4N45_17010 PF00842 Alanine racemase, C-terminal domain J4N45_17015 PF03796 DnaB-like helicase C terminal domain J4N45_17015 PF00772 DnaB-like helicase N terminal domain J4N45_17025 PF01281 Ribosomal protein L9, N-terminal domain J4N45_17025 PF03948 Ribosomal protein L9, C-terminal domain J4N45_17030 PF01084 Ribosomal protein S18 J4N45_17035 PF01250 Ribosomal protein S6 J4N45_17040 PF01112 Asparaginase J4N45_17045 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N45_17055 PF02254 TrkA-N domain J4N45_17055 PF00999 Sodium/hydrogen exchanger family J4N45_17060 PF02525 Flavodoxin-like fold J4N45_17065 PF12848 ABC transporter J4N45_17065 PF00005 ABC transporter J4N45_17075 PF01810 LysE type translocator J4N45_17080 PF00392 Bacterial regulatory proteins, gntR family J4N45_17080 PF00155 Aminotransferase class I and II J4N45_17085 PF00561 alpha/beta hydrolase fold J4N45_17090 PF06794 Uncharacterised protein family (UPF0270) J4N45_17095 PF00485 Phosphoribulokinase / Uridine kinase family J4N45_17100 PF00027 Cyclic nucleotide-binding domain J4N45_17100 PF13545 Crp-like helix-turn-helix domain J4N45_17110 PF00171 Aldehyde dehydrogenase family J4N45_17115 PF04958 Arginine N-succinyltransferase beta subunit J4N45_17120 PF00202 Aminotransferase class-III J4N45_17125 PF00117 Glutamine amidotransferase class-I J4N45_17135 PF00579 tRNA synthetases class I (W and Y) J4N45_17140 PF13419 Haloacid dehalogenase-like hydrolase J4N45_17145 PF00834 Ribulose-phosphate 3 epimerase family J4N45_17150 PF02086 D12 class N6 adenine-specific DNA methyltransferase J4N45_17160 PF01761 3-dehydroquinate synthase J4N45_17165 PF01202 Shikimate kinase J4N45_17170 PF11741 AMIN domain J4N45_17170 PF00263 Bacterial type II and III secretion system protein J4N45_17170 PF03958 Bacterial type II/III secretion system short domain J4N45_17170 PF07660 Secretin and TonB N terminus short domain J4N45_17190 PF11104 Type IV pilus assembly protein PilM; J4N45_17195 PF17092 Penicillin-binding protein OB-like domain J4N45_17195 PF00912 Transglycosylase J4N45_17195 PF00905 Penicillin binding protein transpeptidase domain J4N45_17200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_17200 PF03466 LysR substrate binding domain J4N45_17205 PF08534 Redoxin J4N45_17205 PF00462 Glutaredoxin J4N45_17210 PF01042 Endoribonuclease L-PSP J4N45_17215 PF00583 Acetyltransferase (GNAT) family J4N45_17215 PF14698 Argininosuccinate lyase C-terminal J4N45_17215 PF00206 Lyase J4N45_17225 PF00764 Arginosuccinate synthase J4N45_17230 PF00696 Amino acid kinase family J4N45_17235 PF01118 Semialdehyde dehydrogenase, NAD binding domain J4N45_17235 PF02774 Semialdehyde dehydrogenase, dimerisation domain J4N45_17240 PF07687 Peptidase dimerisation domain J4N45_17240 PF01546 Peptidase family M20/M25/M40 J4N45_17245 PF00311 Phosphoenolpyruvate carboxylase J4N45_17265 PF02219 Methylenetetrahydrofolate reductase J4N45_17270 PF00742 Homoserine dehydrogenase J4N45_17270 PF03447 Homoserine dehydrogenase, NAD binding domain J4N45_17270 PF00696 Amino acid kinase family J4N45_17275 PF01053 Cys/Met metabolism PLP-dependent enzyme J4N45_17280 PF01340 Met Apo-repressor, MetJ J4N45_17285 PF00390 Malic enzyme, N-terminal domain J4N45_17285 PF03949 Malic enzyme, NAD binding domain J4N45_17290 PF01197 Ribosomal protein L31 J4N45_17295 PF18319 PriA DNA helicase Cys-rich region (CRR) domain J4N45_17295 PF17764 3′ DNA-binding domain (3′BD) J4N45_17295 PF00271 Helicase conserved C-terminal domain J4N45_17295 PF00270 DEAD/DEAH box helicase J4N45_17295 PF18074 Primosomal protein N C-terminal domain J4N45_17300 PF00356 Bacterial regulatory proteins, lacI family J4N45_17310 PF00227 Proteasome subunit J4N45_17315 PF00004 ATPase family associated with various cellular activities (AAA) J4N45_17315 PF07724 AAA domain (Cdc48 subfamily) J4N45_17325 PF01040 UbiA prenyltransferase family J4N45_17330 PF03737 Aldolase/RraA J4N45_17335 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J4N45_17335 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J4N45_17335 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J4N45_17340 PF02719 Polysaccharide biosynthesis protein J4N45_17345 PF02397 Bacterial sugar transferase J4N45_17350 PF01370 NAD dependent epimerase/dehydratase family J4N45_17370 PF01370 NAD dependent epimerase/dehydratase family J4N45_17375 PF00132 Bacterial transferase hexapeptide (six repeats) J4N45_17390 PF00977 Histidine biosynthesis protein J4N45_17395 PF00117 Glutamine amidotransferase class-I J4N45_17405 PF02348 Cytidylyltransferase J4N45_17410 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J4N45_17410 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J4N45_17415 PF00483 Nucleotidyl transferase J4N45_17425 PF03102 NeuB family J4N45_17425 PF08666 SAF domain J4N45_17430 PF02350 UDP-N-acetylglucosamine 2-epimerase J4N45_17435 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J4N45_17440 PF02719 Polysaccharide biosynthesis protein J4N45_17450 PF01943 Polysaccharide biosynthesis protein J4N45_17460 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase J4N45_17465 PF04321 RmlD substrate binding domain J4N45_17470 PF00483 Nucleotidyl transferase J4N45_17475 PF16363 GDP-mannose 4,6 dehydratase J4N45_17485 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain J4N45_17485 PF10996 Beta-Casp domain J4N45_17485 PF00753 Metallo-beta-lactamase superfamily J4N45_17495 PF00953 Glycosyl transferase family 4 J4N45_17500 PF00953 Glycosyl transferase family 4 J4N45_17505 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J4N45_17505 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J4N45_17505 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J4N45_17505 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J4N45_17510 PF00132 Bacterial transferase hexapeptide (six repeats) J4N45_17510 PF12804 MobA-like NTP transferase domain J4N45_17525 PF00483 Nucleotidyl transferase J4N45_17535 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J4N45_17535 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J4N45_17535 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J4N45_17540 PF01370 NAD dependent epimerase/dehydratase family J4N45_17545 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase J4N45_17550 PF04321 RmlD substrate binding domain J4N45_17555 PF00483 Nucleotidyl transferase J4N45_17560 PF16363 GDP-mannose 4,6 dehydratase J4N45_17575 PF01609 Transposase DDE domain J4N45_17575 PF13808 DDE_Tnp_1-associated J4N45_17580 PF00535 Glycosyl transferase family 2 J4N45_17585 PF00535 Glycosyl transferase family 2 J4N45_17600 PF02350 UDP-N-acetylglucosamine 2-epimerase J4N45_17610 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J4N45_17615 PF00132 Bacterial transferase hexapeptide (six repeats) J4N45_17620 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J4N45_17620 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J4N45_17625 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J4N45_17625 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J4N45_17625 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J4N45_17630 PF13614 AAA domain J4N45_17630 PF13807 G-rich domain on putative tyrosine kinase J4N45_17630 PF02706 Chain length determinant protein J4N45_17640 PF01451 Low molecular weight phosphotyrosine protein phosphatase J4N45_17645 PF02563 Polysaccharide biosynthesis/export protein J4N45_17645 PF10531 SLBB domain J4N45_17645 PF18412 Outer-membrane lipoprotein Wza C-terminal domain J4N45_17650 PF06082 Exopolysaccharide biosynthesis protein YbjH J4N45_17660 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF J4N45_17670 PF01370 NAD dependent epimerase/dehydratase family J4N45_17675 PF01522 Polysaccharide deacetylase J4N45_17680 PF01075 Glycosyltransferase family 9 (heptosyltransferase) J4N45_17685 PF01075 Glycosyltransferase family 9 (heptosyltransferase) J4N45_17695 PF00535 Glycosyl transferase family 2 J4N45_17710 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) J4N45_17715 PF00535 Glycosyl transferase family 2 J4N45_17730 PF01075 Glycosyltransferase family 9 (heptosyltransferase) J4N45_17735 PF00535 Glycosyl transferase family 2 J4N45_17740 PF01075 Glycosyltransferase family 9 (heptosyltransferase) J4N45_17745 PF01467 Cytidylyltransferase-like J4N45_17750 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase J4N45_17755 PF00156 Phosphoribosyl transferase domain J4N45_17760 PF03725 3' exoribonuclease family, domain 2 J4N45_17760 PF01138 3' exoribonuclease family, domain 1 J4N45_17765 PF03755 YicC-like family, N-terminal region J4N45_17765 PF08340 Domain of unknown function (DUF1732) J4N45_17770 PF00860 Permease family J4N45_17775 PF00625 Guanylate kinase J4N45_17780 PF01192 RNA polymerase Rpb6 J4N45_17785 PF13291 ACT domain J4N45_17785 PF04607 Region found in RelA / SpoT proteins J4N45_17785 PF02824 TGS domain J4N45_17790 PF12105 SpoU, rRNA methylase, C-terminal J4N45_17790 PF00588 SpoU rRNA Methylase family J4N45_17795 PF00270 DEAD/DEAH box helicase J4N45_17795 PF00271 Helicase conserved C-terminal domain J4N45_17795 PF17191 RecG wedge domain J4N45_17800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_17800 PF00512 His Kinase A (phospho-acceptor) domain J4N45_17800 PF00672 HAMP domain J4N45_17805 PF00072 Response regulator receiver domain J4N45_17805 PF00486 Transcriptional regulatory protein, C terminal J4N45_17815 PF01272 Transcription elongation factor, GreA/GreB, C-term J4N45_17815 PF03449 Transcription elongation factor, N-terminal J4N45_17820 PF04222 Protein of unknown function (DUF416) J4N45_17825 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N45_17835 PF01208 Uroporphyrinogen decarboxylase (URO-D) J4N45_17840 PF00293 NUDIX domain J4N45_17840 PF09297 NADH pyrophosphatase zinc ribbon domain J4N45_17845 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ J4N45_17850 PF05000 RNA polymerase Rpb1, domain 4 J4N45_17850 PF04998 RNA polymerase Rpb1, domain 5 J4N45_17850 PF04997 RNA polymerase Rpb1, domain 1 J4N45_17850 PF00623 RNA polymerase Rpb1, domain 2 J4N45_17850 PF04983 RNA polymerase Rpb1, domain 3 J4N45_17855 PF04563 RNA polymerase beta subunit J4N45_17855 PF04561 RNA polymerase Rpb2, domain 2 J4N45_17855 PF04565 RNA polymerase Rpb2, domain 3 J4N45_17855 PF10385 RNA polymerase beta subunit external 1 domain J4N45_17855 PF00562 RNA polymerase Rpb2, domain 6 J4N45_17855 PF04560 RNA polymerase Rpb2, domain 7 J4N45_17860 PF00542 Ribosomal protein L7/L12 C-terminal domain J4N45_17860 PF16320 Ribosomal protein L7/L12 dimerisation domain J4N45_17865 PF00466 Ribosomal protein L10 J4N45_17870 PF00687 Ribosomal protein L1p/L10e family J4N45_17875 PF00298 Ribosomal protein L11, RNA binding domain J4N45_17875 PF03946 Ribosomal protein L11, N-terminal domain J4N45_17880 PF02357 Transcription termination factor nusG J4N45_17880 PF00467 KOW motif J4N45_17885 PF00584 SecE/Sec61-gamma subunits of protein translocation complex J4N45_17890 PF03143 Elongation factor Tu C-terminal domain J4N45_17890 PF00009 Elongation factor Tu GTP binding domain J4N45_17890 PF03144 Elongation factor Tu domain 2 J4N45_17915 PF00485 Phosphoribulokinase / Uridine kinase family J4N45_17920 PF08279 HTH domain J4N45_17920 PF02237 Biotin protein ligase C terminal domain J4N45_17920 PF03099 Biotin/lipoate A/B protein ligase family J4N45_17925 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain J4N45_17925 PF01565 FAD binding domain J4N45_17935 PF13091 PLD-like domain J4N45_17940 PF00679 Elongation factor G C-terminus J4N45_17940 PF00009 Elongation factor Tu GTP binding domain J4N45_17940 PF03144 Elongation factor Tu domain 2 J4N45_17945 PF03951 Glutamine synthetase, beta-Grasp domain J4N45_17945 PF00120 Glutamine synthetase, catalytic domain J4N45_17955 PF00512 His Kinase A (phospho-acceptor) domain J4N45_17955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_17955 PF00989 PAS fold J4N45_17960 PF00072 Response regulator receiver domain J4N45_17960 PF02954 Bacterial regulatory protein, Fis family J4N45_17960 PF00158 Sigma-54 interaction domain J4N45_17965 PF00563 EAL domain J4N45_17965 PF03707 Bacterial signalling protein N terminal repeat J4N45_17965 PF00990 Diguanylate cyclase, GGDEF domain J4N45_17970 PF04055 Radical SAM superfamily J4N45_17970 PF06969 HemN C-terminal domain J4N45_17975 PF10675 Protein of unknown function (DUF2489) J4N45_17980 PF04220 Der GTPase activator (YihI) J4N45_17990 PF01726 LexA DNA binding domain J4N45_17990 PF00717 Peptidase S24-like J4N45_17995 PF01553 Acyltransferase J4N45_18000 PF01040 UbiA prenyltransferase family J4N45_18005 PF04345 Chorismate lyase J4N45_18010 PF03748 Flagellar basal body-associated protein FliL J4N45_18015 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease J4N45_18015 PF01694 Rhomboid family J4N45_18020 PF00581 Rhodanese-like domain J4N45_18025 PF00140 Sigma-70 factor, region 1.2 J4N45_18025 PF04542 Sigma-70 region 2 J4N45_18025 PF04545 Sigma-70, region 4 J4N45_18030 PF18075 FtsX extracellular domain J4N45_18035 PF00005 ABC transporter J4N45_18040 PF00448 SRP54-type protein, GTPase domain J4N45_18040 PF02881 SRP54-type protein, helical bundle domain J4N45_18040 PF02881 SRP54-type protein, helical bundle domain J4N45_18040 PF00448 SRP54-type protein, GTPase domain J4N45_18055 PF01914 MarC family integral membrane protein J4N45_18085 PF08668 HDOD domain J4N45_18085 PF00563 EAL domain J4N45_18090 PF01810 LysE type translocator J4N45_18120 PF13419 Haloacid dehalogenase-like hydrolase J4N45_18125 PF00589 Phage integrase family J4N45_18125 PF02899 Phage integrase, N-terminal SAM-like domain J4N45_18135 PF01678 Diaminopimelate epimerase J4N45_18140 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain J4N45_18140 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J4N45_18150 PF01491 Frataxin-like domain J4N45_18155 PF12633 Adenylate cyclase NT domain J4N45_18155 PF01295 Adenylate cyclase, class-I J4N45_18160 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain J4N45_18160 PF03900 Porphobilinogen deaminase, C-terminal domain J4N45_18165 PF02602 Uroporphyrinogen-III synthase HemD J4N45_18170 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase J4N45_18175 PF07219 HemY protein N-terminus J4N45_18215 PF00970 Oxidoreductase FAD-binding domain J4N45_18215 PF00175 Oxidoreductase NAD-binding domain J4N45_18220 PF00970 Oxidoreductase FAD-binding domain J4N45_18220 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N45_18220 PF00175 Oxidoreductase NAD-binding domain J4N45_18225 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase J4N45_18235 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N45_18235 PF07498 Rho termination factor, N-terminal domain J4N45_18235 PF07497 Rho termination factor, RNA-binding domain J4N45_18240 PF00085 Thioredoxin J4N45_18245 PF00271 Helicase conserved C-terminal domain J4N45_18245 PF00270 DEAD/DEAH box helicase J4N45_18250 PF02541 Ppx/GppA phosphatase family J4N45_18255 PF02592 Putative vitamin uptake transporter J4N45_18265 PF00271 Helicase conserved C-terminal domain J4N45_18265 PF00570 HRDC domain J4N45_18265 PF16124 RecQ zinc-binding J4N45_18265 PF09382 RQC domain J4N45_18265 PF00270 DEAD/DEAH box helicase J4N45_18270 PF00892 EamA-like transporter family J4N45_18275 PF01810 LysE type translocator J4N45_18280 PF00580 UvrD/REP helicase N-terminal domain J4N45_18280 PF13361 UvrD-like helicase C-terminal domain J4N45_18290 PF05114 Protein of unknown function (DUF692) J4N45_18310 PF07690 Major Facilitator Superfamily J4N45_18315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_18315 PF03466 LysR substrate binding domain J4N45_18320 PF01321 Creatinase/Prolidase N-terminal domain J4N45_18320 PF00557 Metallopeptidase family M24 J4N45_18325 PF06968 Biotin and Thiamin Synthesis associated domain J4N45_18325 PF04055 Radical SAM superfamily J4N45_18330 PF05690 Thiazole biosynthesis protein ThiG J4N45_18340 PF00899 ThiF family J4N45_18345 PF02581 Thiamine monophosphate synthase J4N45_18350 PF01964 Radical SAM ThiC family J4N45_18350 PF13667 ThiC-associated domain J4N45_18355 PF02537 CrcB-like protein, Camphor Resistance (CrcB) J4N45_18400 PF00132 Bacterial transferase hexapeptide (six repeats) J4N45_18405 PF07369 Protein of unknown function (DUF1488) J4N45_18410 PF18317 Shikimate 5'-dehydrogenase C-terminal domain J4N45_18410 PF01488 Shikimate / quinate 5-dehydrogenase J4N45_18410 PF08501 Shikimate dehydrogenase substrate binding domain J4N45_18415 PF01218 Coproporphyrinogen III oxidase J4N45_18420 PF01300 Telomere recombination J4N45_18425 PF00731 AIR carboxylase J4N45_18430 PF02222 ATP-grasp domain J4N45_18430 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain J4N45_18435 PF01396 Topoisomerase DNA binding C4 zinc finger J4N45_18440 PF04361 Protein of unknown function (DUF494) J4N45_18445 PF17782 DprA winged helix domain J4N45_18445 PF02481 DNA recombination-mediator protein A J4N45_18455 PF01327 Polypeptide deformylase J4N45_18460 PF00551 Formyl transferase J4N45_18460 PF02911 Formyl transferase, C-terminal domain J4N45_18465 PF01189 16S rRNA methyltransferase RsmB/F J4N45_18465 PF01029 NusB family J4N45_18470 PF02080 TrkA-C domain J4N45_18470 PF02254 TrkA-N domain J4N45_18475 PF02386 Cation transport protein J4N45_18480 PF03006 Haemolysin-III related J4N45_18485 PF07070 SpoOM protein J4N45_18495 PF06288 Protein of unknown function (DUF1040) J4N45_18500 PF13746 4Fe-4S dicluster domain J4N45_18500 PF12801 4Fe-4S binding domain J4N45_18500 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase J4N45_18505 PF01636 Phosphotransferase enzyme family J4N45_18510 PF01323 DSBA-like thioredoxin domain J4N45_18515 PF01553 Acyltransferase J4N45_18530 PF13335 Magnesium chelatase, subunit ChlI C-terminal J4N45_18530 PF01078 Magnesium chelatase, subunit ChlI J4N45_18535 PF00205 Thiamine pyrophosphate enzyme, central domain J4N45_18535 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J4N45_18535 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J4N45_18545 PF01063 Amino-transferase class IV J4N45_18550 PF00920 Dehydratase family J4N45_18555 PF00291 Pyridoxal-phosphate dependent enzyme J4N45_18555 PF00585 C-terminal regulatory domain of Threonine dehydratase J4N45_18560 PF00990 Diguanylate cyclase, GGDEF domain J4N45_18565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_18565 PF03466 LysR substrate binding domain J4N45_18570 PF07690 Major Facilitator Superfamily J4N45_18575 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N45_18580 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_18585 PF00132 Bacterial transferase hexapeptide (six repeats) J4N45_18585 PF12804 MobA-like NTP transferase domain J4N45_18590 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain J4N45_18590 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain J4N45_18595 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N45_18595 PF02874 ATP synthase alpha/beta family, beta-barrel domain J4N45_18600 PF00231 ATP synthase J4N45_18605 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N45_18605 PF00306 ATP synthase alpha/beta chain, C terminal domain J4N45_18605 PF02874 ATP synthase alpha/beta family, beta-barrel domain J4N45_18610 PF00213 ATP synthase delta (OSCP) subunit J4N45_18615 PF00430 ATP synthase B/B' CF(0) J4N45_18620 PF00137 ATP synthase subunit C J4N45_18625 PF00119 ATP synthase A chain J4N45_18630 PF03899 ATP synthase I chain J4N45_18635 PF17762 HTH domain found in ParB protein J4N45_18635 PF02195 ParB-like nuclease domain J4N45_18640 PF13614 AAA domain J4N45_18645 PF02527 rRNA small subunit methyltransferase G J4N45_18650 PF01134 Glucose inhibited division protein A J4N45_18650 PF13932 GidA associated domain J4N45_18655 PF00258 Flavodoxin J4N45_18660 PF01926 50S ribosome-binding GTPase J4N45_18660 PF12631 MnmE helical domain J4N45_18660 PF10396 GTP-binding protein TrmE N-terminus J4N45_18665 PF02096 60Kd inner membrane protein J4N45_18665 PF14849 YidC periplasmic domain J4N45_18670 PF01809 Putative membrane protein insertion efficiency factor J4N45_18675 PF00825 Ribonuclease P J4N45_18680 PF00468 Ribosomal protein L34 J4N45_18685 PF00005 ABC transporter J4N45_18690 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_18695 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N45_18700 PF13614 AAA domain J4N45_18700 PF18607 ParA helix turn helix domain J4N45_18710 PF13718 GNAT acetyltransferase 2 J4N45_18710 PF05127 Helicase J4N45_18720 PF00376 MerR family regulatory protein J4N45_18720 PF09278 MerR, DNA binding J4N45_18735 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4N45_18735 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N45_18740 PF14765 Polyketide synthase dehydratase J4N45_18740 PF00550 Phosphopantetheine attachment site J4N45_18740 PF08659 KR domain J4N45_18740 PF02801 Beta-ketoacyl synthase, C-terminal domain J4N45_18740 PF00109 Beta-ketoacyl synthase, N-terminal domain J4N45_18740 PF16197 Ketoacyl-synthetase C-terminal extension J4N45_18740 PF09277 Erythronolide synthase, docking J4N45_18740 PF08990 Erythronolide synthase docking J4N45_18740 PF08240 Alcohol dehydrogenase GroES-like domain J4N45_18740 PF00698 Acyl transferase domain J4N45_18750 PF01544 CorA-like Mg2+ transporter protein J4N45_18760 PF00012 Hsp70 protein J4N45_18770 PF03466 LysR substrate binding domain J4N45_18770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_18795 PF01661 Macro domain J4N45_18800 PF00356 Bacterial regulatory proteins, lacI family J4N45_18810 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_18815 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_18820 PF03636 Glycosyl hydrolase family 65, N-terminal domain J4N45_18820 PF03632 Glycosyl hydrolase family 65 central catalytic domain J4N45_18820 PF03633 Glycosyl hydrolase family 65, C-terminal domain J4N45_18825 PF13419 Haloacid dehalogenase-like hydrolase J4N45_18830 PF00005 ABC transporter J4N45_18830 PF08402 TOBE domain J4N45_18840 PF00251 Glycosyl hydrolases family 32 N-terminal domain J4N45_18840 PF08244 Glycosyl hydrolases family 32 C terminal J4N45_18845 PF00128 Alpha amylase, catalytic domain J4N45_18855 PF04286 Protein of unknown function (DUF445) J4N45_18860 PF00072 Response regulator receiver domain J4N45_18860 PF00672 HAMP domain J4N45_18860 PF00512 His Kinase A (phospho-acceptor) domain J4N45_18860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_18860 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J4N45_18860 PF01627 Hpt domain J4N45_18890 PF00392 Bacterial regulatory proteins, gntR family J4N45_18890 PF07702 UTRA domain J4N45_18895 PF06754 Phosphonate metabolism protein PhnG J4N45_18900 PF05845 Bacterial phosphonate metabolism protein (PhnH) J4N45_18905 PF05861 Bacterial phosphonate metabolism protein (PhnI) J4N45_18910 PF06007 Phosphonate metabolism protein PhnJ J4N45_18915 PF00005 ABC transporter J4N45_18920 PF00005 ABC transporter J4N45_18925 PF07969 Amidohydrolase family J4N45_18935 PF12706 Beta-lactamase superfamily domain J4N45_18965 PF00282 Pyridoxal-dependent decarboxylase conserved domain J4N45_18970 PF00491 Arginase family J4N45_18975 PF02492 CobW/HypB/UreG, nucleotide-binding domain J4N45_18975 PF07683 Cobalamin synthesis protein cobW C-terminal domain J4N45_18980 PF00107 Zinc-binding dehydrogenase J4N45_18980 PF08240 Alcohol dehydrogenase GroES-like domain J4N45_18990 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch J4N45_18990 PF01262 Alanine dehydrogenase/PNT, C-terminal domain J4N45_18990 PF05222 Alanine dehydrogenase/PNT, N-terminal domain J4N45_18995 PF02233 NAD(P) transhydrogenase beta subunit J4N45_19015 PF01794 Ferric reductase like transmembrane component J4N45_19020 PF00174 Oxidoreductase molybdopterin binding domain J4N45_19050 PF00578 AhpC/TSA family J4N45_19050 PF10417 C-terminal domain of 1-Cys peroxiredoxin J4N45_19055 PF04069 Substrate binding domain of ABC-type glycine betaine transport system J4N45_19070 PF10417 C-terminal domain of 1-Cys peroxiredoxin J4N45_19070 PF00578 AhpC/TSA family J4N45_19075 PF13192 Thioredoxin domain J4N45_19075 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N45_19080 PF00106 short chain dehydrogenase J4N45_19085 PF08787 Alginate lyase J4N45_19095 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J4N45_19095 PF13378 Enolase C-terminal domain-like J4N45_19100 PF00356 Bacterial regulatory proteins, lacI family J4N45_19115 PF03372 Endonuclease/Exonuclease/phosphatase family J4N45_19120 PF00561 alpha/beta hydrolase fold J4N45_19125 PF03280 Proteobacterial lipase chaperone protein J4N45_19130 PF01557 Fumarylacetoacetate (FAA) hydrolase family J4N45_19135 PF03466 LysR substrate binding domain J4N45_19135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_19140 PF01370 NAD dependent epimerase/dehydratase family J4N45_19145 PF00474 Sodium:solute symporter family J4N45_19150 PF00156 Phosphoribosyl transferase domain J4N45_19155 PF03466 LysR substrate binding domain J4N45_19155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_19160 PF00378 Enoyl-CoA hydratase/isomerase J4N45_19165 PF01625 Peptide methionine sulfoxide reductase J4N45_19170 PF03358 NADPH-dependent FMN reductase J4N45_19175 PF07690 Major Facilitator Superfamily J4N45_19180 PF12802 MarR family J4N45_19185 PF00005 ABC transporter J4N45_19195 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_19200 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_19205 PF13599 Pentapeptide repeats (9 copies) J4N45_19215 PF17874 MalT-like TPR region J4N45_19215 PF00196 Bacterial regulatory proteins, luxR family J4N45_19220 PF00343 Carbohydrate phosphorylase J4N45_19225 PF02446 4-alpha-glucanotransferase J4N45_19230 PF00128 Alpha amylase, catalytic domain J4N45_19230 PF02806 Alpha amylase, C-terminal all-beta domain J4N45_19230 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J4N45_19240 PF01124 MAPEG family J4N45_19250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_19250 PF03466 LysR substrate binding domain J4N45_19255 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J4N45_19270 PF06276 Ferric iron reductase FhuF-like transporter J4N45_19270 PF04183 IucA / IucC family J4N45_19280 PF07715 TonB-dependent Receptor Plug Domain J4N45_19280 PF00593 TonB dependent receptor J4N45_19285 PF00881 Nitroreductase family J4N45_19290 PF06276 Ferric iron reductase FhuF-like transporter J4N45_19290 PF04183 IucA / IucC family J4N45_19295 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) J4N45_19305 PF02614 Glucuronate isomerase J4N45_19310 PF00474 Sodium:solute symporter family J4N45_19315 PF00474 Sodium:solute symporter family J4N45_19330 PF06178 Oligogalacturonate-specific porin protein (KdgM) J4N45_19340 PF00571 CBS domain J4N45_19340 PF01380 SIS domain J4N45_19345 PF09339 IclR helix-turn-helix domain J4N45_19345 PF01614 Bacterial transcriptional regulator J4N45_19355 PF10688 Bacterial inner membrane protein J4N45_19370 PF00474 Sodium:solute symporter family J4N45_19375 PF01081 KDPG and KHG aldolase J4N45_19380 PF00294 pfkB family carbohydrate kinase J4N45_19385 PF07883 Cupin domain J4N45_19390 PF05426 Alginate lyase J4N45_19390 PF07940 Heparinase II/III-like protein J4N45_19395 PF07940 Heparinase II/III-like protein J4N45_19395 PF05426 Alginate lyase J4N45_19405 PF01594 AI-2E family transporter J4N45_19415 PF08787 Alginate lyase J4N45_19430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N45_19430 PF00672 HAMP domain J4N45_19430 PF02743 Cache domain J4N45_19450 PF03466 LysR substrate binding domain J4N45_19450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_19455 PF01177 Asp/Glu/Hydantoin racemase J4N45_19460 PF01810 LysE type translocator J4N45_19470 PF14765 Polyketide synthase dehydratase J4N45_19470 PF00550 Phosphopantetheine attachment site J4N45_19470 PF00698 Acyl transferase domain J4N45_19470 PF08240 Alcohol dehydrogenase GroES-like domain J4N45_19470 PF08659 KR domain J4N45_19490 PF01547 Bacterial extracellular solute-binding protein J4N45_19495 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_19500 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_19505 PF00005 ABC transporter J4N45_19505 PF17912 MalK OB fold domain J4N45_19520 PF00474 Sodium:solute symporter family J4N45_19525 PF08787 Alginate lyase J4N45_19540 PF00392 Bacterial regulatory proteins, gntR family J4N45_19540 PF07729 FCD domain J4N45_19550 PF00392 Bacterial regulatory proteins, gntR family J4N45_19550 PF07729 FCD domain J4N45_19555 PF00571 CBS domain J4N45_19555 PF01380 SIS domain J4N45_19560 PF14579 Helix-hairpin-helix motif J4N45_19560 PF07733 Bacterial DNA polymerase III alpha NTPase domain J4N45_19560 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J4N45_19560 PF00929 Exonuclease J4N45_19560 PF02811 PHP domain J4N45_19590 PF04993 TfoX N-terminal domain J4N45_19590 PF04994 TfoX C-terminal domain J4N45_19595 PF00892 EamA-like transporter family J4N45_19600 PF02743 Cache domain J4N45_19600 PF00672 HAMP domain J4N45_19600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N45_19605 PF00474 Sodium:solute symporter family J4N45_19620 PF17158 Membrane-associated sensor, integral membrane domain J4N45_19620 PF00990 Diguanylate cyclase, GGDEF domain J4N45_19630 PF00730 HhH-GPD superfamily base excision DNA repair protein J4N45_19630 PF06029 AlkA N-terminal domain J4N45_19635 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain J4N45_19635 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J4N45_19655 PF00990 Diguanylate cyclase, GGDEF domain J4N45_19660 PF03116 NQR2, RnfD, RnfE family J4N45_19665 PF03441 FAD binding domain of DNA photolyase J4N45_19665 PF00875 DNA photolyase J4N45_19670 PF04244 Deoxyribodipyrimidine photo-lyase-related protein J4N45_19675 PF00919 Uncharacterized protein family UPF0004 J4N45_19675 PF04055 Radical SAM superfamily J4N45_19685 PF02567 Phenazine biosynthesis-like protein J4N45_19695 PF00106 short chain dehydrogenase J4N45_19715 PF17200 Single Cache domain 2 J4N45_19715 PF00672 HAMP domain J4N45_19715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N45_19740 PF00106 short chain dehydrogenase J4N45_19755 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N45_19755 PF12793 Sugar transport-related sRNA regulator N-term J4N45_19765 PF00892 EamA-like transporter family J4N45_19770 PF00583 Acetyltransferase (GNAT) family J4N45_19780 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain J4N45_19780 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J4N45_19785 PF12706 Beta-lactamase superfamily domain J4N45_19790 PF00367 phosphotransferase system, EIIB J4N45_19790 PF02378 Phosphotransferase system, EIIC J4N45_19795 PF00356 Bacterial regulatory proteins, lacI family J4N45_19800 PF00251 Glycosyl hydrolases family 32 N-terminal domain J4N45_19800 PF08244 Glycosyl hydrolases family 32 C terminal J4N45_19805 PF13419 Haloacid dehalogenase-like hydrolase J4N45_19810 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N45_19810 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N45_19810 PF02378 Phosphotransferase system, EIIC J4N45_19815 PF01232 Mannitol dehydrogenase Rossmann domain J4N45_19815 PF08125 Mannitol dehydrogenase C-terminal domain J4N45_19820 PF05068 Mannitol repressor J4N45_19825 PF00455 DeoR C terminal sensor domain J4N45_19825 PF08220 DeoR-like helix-turn-helix domain J4N45_19830 PF01380 SIS domain J4N45_19835 PF00356 Bacterial regulatory proteins, lacI family J4N45_19840 PF01547 Bacterial extracellular solute-binding protein J4N45_19845 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_19850 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_19855 PF08402 TOBE domain J4N45_19855 PF00005 ABC transporter J4N45_19860 PF00149 Calcineurin-like phosphoesterase J4N45_19885 PF00664 ABC transporter transmembrane region J4N45_19885 PF00005 ABC transporter J4N45_19900 PF00728 Glycosyl hydrolase family 20, catalytic domain J4N45_19900 PF02838 Glycosyl hydrolase family 20, domain 2 J4N45_19910 PF00444 Ribosomal protein L36 J4N45_19915 PF01197 Ribosomal protein L31 J4N45_19920 PF10952 Protein of unknown function (DUF2753) J4N45_19925 PF00893 Small Multidrug Resistance protein J4N45_19935 PF02702 Osmosensitive K+ channel His kinase sensor domain J4N45_19935 PF13493 Domain of unknown function (DUF4118) J4N45_19935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_19935 PF00512 His Kinase A (phospho-acceptor) domain J4N45_19940 PF00486 Transcriptional regulatory protein, C terminal J4N45_19940 PF00072 Response regulator receiver domain J4N45_19945 PF04116 Fatty acid hydroxylase superfamily J4N45_19965 PF00463 Isocitrate lyase family J4N45_19970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_19970 PF03466 LysR substrate binding domain J4N45_19975 PF01274 Malate synthase J4N45_19980 PF16124 RecQ zinc-binding J4N45_19980 PF09382 RQC domain J4N45_19980 PF00270 DEAD/DEAH box helicase J4N45_19980 PF00271 Helicase conserved C-terminal domain J4N45_19980 PF00570 HRDC domain J4N45_19985 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase J4N45_19990 PF02566 OsmC-like protein J4N45_19995 PF01047 MarR family J4N45_20000 PF03466 LysR substrate binding domain J4N45_20000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_20030 PF00465 Iron-containing alcohol dehydrogenase J4N45_20045 PF08450 SMP-30/Gluconolactonase/LRE-like region J4N45_20055 PF00194 Eukaryotic-type carbonic anhydrase J4N45_20060 PF00005 ABC transporter J4N45_20065 PF01497 Periplasmic binding protein J4N45_20070 PF01032 FecCD transport family J4N45_20095 PF00141 Peroxidase J4N45_20100 PF03553 Na+/H+ antiporter family J4N45_20105 PF00120 Glutamine synthetase, catalytic domain J4N45_20110 PF07722 Peptidase C26 J4N45_20115 PF01381 Helix-turn-helix J4N45_20115 PF07883 Cupin domain J4N45_20120 PF00171 Aldehyde dehydrogenase family J4N45_20125 PF01266 FAD dependent oxidoreductase J4N45_20130 PF00795 Carbon-nitrogen hydrolase J4N45_20135 PF04371 Porphyromonas-type peptidyl-arginine deiminase J4N45_20140 PF00171 Aldehyde dehydrogenase family J4N45_20145 PF00202 Aminotransferase class-III J4N45_20150 PF01238 Phosphomannose isomerase type I J4N45_20165 PF01053 Cys/Met metabolism PLP-dependent enzyme J4N45_20170 PF01037 Lrp/AsnC ligand binding domain J4N45_20180 PF01238 Phosphomannose isomerase type I J4N45_20185 PF09261 Alpha mannosidase middle domain J4N45_20185 PF07748 Glycosyl hydrolases family 38 C-terminal domain J4N45_20185 PF01074 Glycosyl hydrolases family 38 N-terminal domain J4N45_20195 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N45_20195 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N45_20200 PF00392 Bacterial regulatory proteins, gntR family J4N45_20200 PF07702 UTRA domain J4N45_20210 PF00202 Aminotransferase class-III J4N45_20220 PF16868 NMT1-like family J4N45_20240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_20240 PF03466 LysR substrate binding domain J4N45_20250 PF12706 Beta-lactamase superfamily domain J4N45_20300 PF00873 AcrB/AcrD/AcrF family J4N45_20310 PF00563 EAL domain J4N45_20310 PF00990 Diguanylate cyclase, GGDEF domain J4N45_20310 PF03707 Bacterial signalling protein N terminal repeat J4N45_20350 PF00582 Universal stress protein family J4N45_20355 PF00881 Nitroreductase family J4N45_20360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_20360 PF03466 LysR substrate binding domain J4N45_20380 PF02311 AraC-like ligand binding domain J4N45_20380 PF12833 Helix-turn-helix domain J4N45_20385 PF02798 Glutathione S-transferase, N-terminal domain J4N45_20395 PF00483 Nucleotidyl transferase J4N45_20400 PF05193 Peptidase M16 inactive domain J4N45_20400 PF00675 Insulinase (Peptidase family M16) J4N45_20405 PF00011 Hsp20/alpha crystallin family J4N45_20410 PF00012 Hsp70 protein J4N45_20415 PF00684 DnaJ central domain J4N45_20415 PF00226 DnaJ domain J4N45_20415 PF01556 DnaJ C terminal domain J4N45_20420 PF00255 Glutathione peroxidase J4N45_20425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_20425 PF03466 LysR substrate binding domain J4N45_20430 PF00529 HlyD membrane-fusion protein of T1SS J4N45_20430 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N45_20435 PF11742 Protein of unknown function (DUF3302) J4N45_20450 PF01048 Phosphorylase superfamily J4N45_20455 PF08349 Protein of unknown function (DUF1722) J4N45_20460 PF13411 MerR HTH family regulatory protein J4N45_20465 PF00875 DNA photolyase J4N45_20465 PF03441 FAD binding domain of DNA photolyase J4N45_20470 PF17969 L,D-transpeptidase C-terminal domain J4N45_20470 PF01476 LysM domain J4N45_20470 PF03734 L,D-transpeptidase catalytic domain J4N45_20490 PF00270 DEAD/DEAH box helicase J4N45_20490 PF00271 Helicase conserved C-terminal domain J4N45_20495 PF12849 PBP superfamily domain J4N45_20500 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_20505 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_20510 PF00005 ABC transporter J4N45_20520 PF00158 Sigma-54 interaction domain J4N45_20520 PF01590 GAF domain J4N45_20535 PF00753 Metallo-beta-lactamase superfamily J4N45_20535 PF00301 Rubredoxin J4N45_20535 PF00258 Flavodoxin J4N45_20540 PF18113 Rubredoxin binding C-terminal domain J4N45_20540 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N45_20555 PF13419 Haloacid dehalogenase-like hydrolase J4N45_20560 PF00990 Diguanylate cyclase, GGDEF domain J4N45_20560 PF03707 Bacterial signalling protein N terminal repeat J4N45_20560 PF00563 EAL domain J4N45_20565 PF00034 Cytochrome c J4N45_20570 PF00115 Cytochrome C and Quinol oxidase polypeptide I J4N45_20580 PF00034 Cytochrome c J4N45_20580 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J4N45_20585 PF00854 POT family J4N45_20590 PF00873 AcrB/AcrD/AcrF family J4N45_20600 PF03466 LysR substrate binding domain J4N45_20600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_20625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_20625 PF03466 LysR substrate binding domain J4N45_20645 PF00106 short chain dehydrogenase J4N45_20655 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase J4N45_20655 PF03033 Glycosyltransferase family 28 N-terminal domain J4N45_20670 PF06719 AraC-type transcriptional regulator N-terminus J4N45_20670 PF12833 Helix-turn-helix domain J4N45_20685 PF03466 LysR substrate binding domain J4N45_20685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_20690 PF00155 Aminotransferase class I and II J4N45_20695 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N45_20700 PF13419 Haloacid dehalogenase-like hydrolase J4N45_20705 PF00202 Aminotransferase class-III J4N45_20710 PF00266 Aminotransferase class-V J4N45_20720 PF00005 ABC transporter J4N45_20725 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_20730 PF00392 Bacterial regulatory proteins, gntR family J4N45_20730 PF07702 UTRA domain J4N45_20745 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N45_20750 PF03611 PTS system sugar-specific permease component J4N45_20755 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N45_20775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_20775 PF03466 LysR substrate binding domain J4N45_20785 PF00455 DeoR C terminal sensor domain J4N45_20785 PF08220 DeoR-like helix-turn-helix domain J4N45_20790 PF02901 Pyruvate formate lyase-like J4N45_20790 PF01228 Glycine radical J4N45_20795 PF04055 Radical SAM superfamily J4N45_20800 PF00923 Transaldolase/Fructose-6-phosphate aldolase J4N45_20820 PF01266 FAD dependent oxidoreductase J4N45_20835 PF00155 Aminotransferase class I and II J4N45_20850 PF01699 Sodium/calcium exchanger protein J4N45_20860 PF09335 SNARE associated Golgi protein J4N45_20865 PF00535 Glycosyl transferase family 2 J4N45_20870 PF00501 AMP-binding enzyme J4N45_20870 PF13193 AMP-binding enzyme C-terminal domain J4N45_20875 PF00351 Biopterin-dependent aromatic amino acid hydroxylase J4N45_20880 PF01329 Pterin 4 alpha carbinolamine dehydratase J4N45_20885 PF13533 Biotin-lipoyl like J4N45_20890 PF00873 AcrB/AcrD/AcrF family J4N45_20905 PF12833 Helix-turn-helix domain J4N45_20910 PF00465 Iron-containing alcohol dehydrogenase J4N45_20915 PF00356 Bacterial regulatory proteins, lacI family J4N45_20920 PF16875 Glycosyl hydrolase family 36 N-terminal domain J4N45_20920 PF16874 Glycosyl hydrolase family 36 C-terminal domain J4N45_20925 PF00474 Sodium:solute symporter family J4N45_20930 PF16363 GDP-mannose 4,6 dehydratase J4N45_20935 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain J4N45_20935 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain J4N45_20965 PF01979 Amidohydrolase family J4N45_20970 PF03476 MOSC N-terminal beta barrel domain J4N45_20970 PF03473 MOSC domain J4N45_20970 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N45_20980 PF02540 NAD synthase J4N45_20985 PF01467 Cytidylyltransferase-like J4N45_21015 PF00245 Alkaline phosphatase J4N45_21020 PF00245 Alkaline phosphatase J4N45_21045 PF00132 Bacterial transferase hexapeptide (six repeats) J4N45_21055 PF01554 MatE J4N45_21065 PF02653 Branched-chain amino acid transport system / permease component J4N45_21075 PF12399 Branched-chain amino acid ATP-binding cassette transporter J4N45_21075 PF00005 ABC transporter J4N45_21080 PF00005 ABC transporter J4N45_21085 PF01774 UreD urease accessory protein J4N45_21090 PF00547 Urease, gamma subunit J4N45_21095 PF00699 Urease beta subunit J4N45_21100 PF01979 Amidohydrolase family J4N45_21100 PF00449 Urease alpha-subunit, N-terminal domain J4N45_21105 PF05194 UreE urease accessory protein, C-terminal domain J4N45_21105 PF02814 UreE urease accessory protein, N-terminal domain J4N45_21115 PF01730 UreF J4N45_21120 PF02492 CobW/HypB/UreG, nucleotide-binding domain J4N45_21130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N45_21130 PF17200 Single Cache domain 2 J4N45_21130 PF00672 HAMP domain J4N45_21140 PF00440 Bacterial regulatory proteins, tetR family J4N45_21140 PF16925 Tetracyclin repressor-like, C-terminal domain J4N45_21145 PF00107 Zinc-binding dehydrogenase J4N45_21145 PF16884 N-terminal domain of oxidoreductase J4N45_21150 PF01575 MaoC like domain J4N45_21160 PF12706 Beta-lactamase superfamily domain J4N45_21165 PF00440 Bacterial regulatory proteins, tetR family J4N45_21185 PF03466 LysR substrate binding domain J4N45_21185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_21195 PF02416 mttA/Hcf106 family J4N45_21200 PF00902 Sec-independent protein translocase protein (TatC) J4N45_21205 PF02416 mttA/Hcf106 family J4N45_21220 PF00271 Helicase conserved C-terminal domain J4N45_21220 PF00270 DEAD/DEAH box helicase J4N45_21250 PF00962 Adenosine/AMP deaminase J4N45_21265 PF00005 ABC transporter J4N45_21270 PF01032 FecCD transport family J4N45_21275 PF01032 FecCD transport family J4N45_21280 PF01497 Periplasmic binding protein J4N45_21285 PF01613 Flavin reductase like domain J4N45_21295 PF17200 Single Cache domain 2 J4N45_21295 PF00672 HAMP domain J4N45_21295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N45_21320 PF03109 ABC1 family J4N45_21325 PF06865 Pyrimidine/purine nucleoside phosphorylase J4N45_21330 PF02678 Pirin J4N45_21330 PF05726 Pirin C-terminal cupin domain J4N45_21335 PF00480 ROK family J4N45_21340 PF00480 ROK family J4N45_21345 PF00232 Glycosyl hydrolase family 1 J4N45_21350 PF00962 Adenosine/AMP deaminase J4N45_21355 PF03411 Penicillin-insensitive murein endopeptidase J4N45_21365 PF08448 PAS fold J4N45_21365 PF00990 Diguanylate cyclase, GGDEF domain J4N45_21375 PF00171 Aldehyde dehydrogenase family J4N45_21380 PF00144 Beta-lactamase J4N45_21390 PF02589 LUD domain J4N45_21395 PF13183 4Fe-4S dicluster domain J4N45_21395 PF11870 Domain of unknown function (DUF3390) J4N45_21395 PF02589 LUD domain J4N45_21400 PF02754 Cysteine-rich domain J4N45_21405 PF02652 L-lactate permease J4N45_21410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_21410 PF03466 LysR substrate binding domain J4N45_21435 PF00005 ABC transporter J4N45_21440 PF01032 FecCD transport family J4N45_21450 PF04055 Radical SAM superfamily J4N45_21455 PF06228 Haem utilisation ChuX/HutX J4N45_21460 PF01243 Pyridoxamine 5'-phosphate oxidase J4N45_21470 PF03466 LysR substrate binding domain J4N45_21470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_21475 PF13462 Thioredoxin J4N45_21475 PF06965 Na+/H+ antiporter 1 J4N45_21480 PF00578 AhpC/TSA family J4N45_21485 PF02683 Cytochrome C biogenesis protein transmembrane region J4N45_21485 PF11412 Disulphide bond corrector protein DsbC J4N45_21505 PF00563 EAL domain J4N45_21505 PF00990 Diguanylate cyclase, GGDEF domain J4N45_21505 PF03707 Bacterial signalling protein N terminal repeat J4N45_21530 PF02355 Protein export membrane protein J4N45_21530 PF13721 SecD export protein N-terminal TM region J4N45_21530 PF07549 SecD/SecF GG Motif J4N45_21535 PF02355 Protein export membrane protein J4N45_21535 PF07549 SecD/SecF GG Motif J4N45_21540 PF01966 HD domain J4N45_21550 PF03264 NapC/NirT cytochrome c family, N-terminal region J4N45_21555 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) J4N45_21560 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J4N45_21560 PF00384 Molybdopterin oxidoreductase J4N45_21560 PF01568 Molydopterin dinucleotide binding domain J4N45_21570 PF00037 4Fe-4S binding domain J4N45_21570 PF12800 4Fe-4S binding domain J4N45_21570 PF13187 4Fe-4S dicluster domain J4N45_21575 PF07730 Histidine kinase J4N45_21575 PF00672 HAMP domain J4N45_21575 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term J4N45_21575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_21580 PF00072 Response regulator receiver domain J4N45_21580 PF00196 Bacterial regulatory proteins, luxR family J4N45_21595 PF00209 Sodium:neurotransmitter symporter family J4N45_21605 PF00072 Response regulator receiver domain J4N45_21605 PF00486 Transcriptional regulatory protein, C terminal J4N45_21610 PF00672 HAMP domain J4N45_21610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_21610 PF00512 His Kinase A (phospho-acceptor) domain J4N45_21615 PF02743 Cache domain J4N45_21615 PF00672 HAMP domain J4N45_21615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N45_21620 PF16874 Glycosyl hydrolase family 36 C-terminal domain J4N45_21620 PF16875 Glycosyl hydrolase family 36 N-terminal domain J4N45_21625 PF00356 Bacterial regulatory proteins, lacI family J4N45_21630 PF08402 TOBE domain J4N45_21630 PF00005 ABC transporter J4N45_21635 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_21640 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_21650 PF02929 Beta galactosidase small chain J4N45_21650 PF16353 Domain of unknown function(DUF4981) J4N45_21650 PF00703 Glycosyl hydrolases family 2 J4N45_21650 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J4N45_21650 PF02837 Glycosyl hydrolases family 2, sugar binding domain J4N45_21655 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain J4N45_21655 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain J4N45_21660 PF08544 GHMP kinases C terminal J4N45_21660 PF10509 Galactokinase galactose-binding signature J4N45_21660 PF00288 GHMP kinases N terminal domain J4N45_21665 PF01263 Aldose 1-epimerase J4N45_21670 PF00990 Diguanylate cyclase, GGDEF domain J4N45_21675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_21675 PF03466 LysR substrate binding domain J4N45_21695 PF00563 EAL domain J4N45_21695 PF00990 Diguanylate cyclase, GGDEF domain J4N45_21695 PF03707 Bacterial signalling protein N terminal repeat J4N45_21710 PF00456 Transketolase, thiamine diphosphate binding domain J4N45_21710 PF02780 Transketolase, C-terminal domain J4N45_21710 PF02779 Transketolase, pyrimidine binding domain J4N45_21715 PF00923 Transaldolase/Fructose-6-phosphate aldolase J4N45_21725 PF03466 LysR substrate binding domain J4N45_21725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_21735 PF00581 Rhodanese-like domain J4N45_21745 PF00899 ThiF family J4N45_21750 PF00994 Probable molybdopterin binding domain J4N45_21750 PF03454 MoeA C-terminal region (domain IV) J4N45_21750 PF03453 MoeA N-terminal region (domain I and II) J4N45_21755 PF01227 GTP cyclohydrolase I J4N45_21760 PF00072 Response regulator receiver domain J4N45_21760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_21765 PF00155 Aminotransferase class I and II J4N45_21775 PF00654 Voltage gated chloride channel J4N45_21780 PF02492 CobW/HypB/UreG, nucleotide-binding domain J4N45_21780 PF07683 Cobalamin synthesis protein cobW C-terminal domain J4N45_21790 PF07726 ATPase family associated with various cellular activities (AAA) J4N45_21790 PF17863 AAA lid domain J4N45_21805 PF13519 von Willebrand factor type A domain J4N45_21805 PF07584 Aerotolerance regulator N-terminal J4N45_21810 PF07584 Aerotolerance regulator N-terminal J4N45_21810 PF00092 von Willebrand factor type A domain J4N45_21820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_21820 PF03466 LysR substrate binding domain J4N45_21825 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J4N45_21825 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J4N45_21830 PF00583 Acetyltransferase (GNAT) family J4N45_21835 PF01595 Cyclin M transmembrane N-terminal domain J4N45_21835 PF03471 Transporter associated domain J4N45_21835 PF00571 CBS domain J4N45_21840 PF01266 FAD dependent oxidoreductase J4N45_21845 PF00120 Glutamine synthetase, catalytic domain J4N45_21850 PF00120 Glutamine synthetase, catalytic domain J4N45_21855 PF00202 Aminotransferase class-III J4N45_21860 PF13416 Bacterial extracellular solute-binding protein J4N45_21865 PF08402 TOBE domain J4N45_21865 PF00005 ABC transporter J4N45_21870 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_21875 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_21895 PF01872 RibD C-terminal domain J4N45_21895 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J4N45_21920 PF05661 Protein of unknown function (DUF808) J4N45_21930 PF00005 ABC transporter J4N45_21930 PF03412 Peptidase C39 family J4N45_21930 PF00664 ABC transporter transmembrane region J4N45_21935 PF00529 HlyD membrane-fusion protein of T1SS J4N45_21935 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N45_21940 PF02321 Outer membrane efflux protein J4N45_21955 PF00128 Alpha amylase, catalytic domain J4N45_21965 PF03741 Integral membrane protein TerC family J4N45_21980 PF07687 Peptidase dimerisation domain J4N45_21980 PF01546 Peptidase family M20/M25/M40 J4N45_21990 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N45_21995 PF00873 AcrB/AcrD/AcrF family J4N45_22000 PF00486 Transcriptional regulatory protein, C terminal J4N45_22000 PF00072 Response regulator receiver domain J4N45_22005 PF00512 His Kinase A (phospho-acceptor) domain J4N45_22005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_22005 PF00672 HAMP domain J4N45_22005 PF16527 Two-component sensor protein CpxA, periplasmic domain J4N45_22010 PF00149 Calcineurin-like phosphoesterase J4N45_22010 PF12320 Type 5 capsule protein repressor C-terminal domain J4N45_22015 PF13476 AAA domain J4N45_22020 PF04266 ASCH domain J4N45_22025 PF04463 Protein of unknown function (DUF523) J4N45_22035 PF01053 Cys/Met metabolism PLP-dependent enzyme J4N45_22040 PF01389 OmpA-like transmembrane domain J4N45_22040 PF00691 OmpA family J4N45_22045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_22055 PF00034 Cytochrome c J4N45_22055 PF03150 Di-haem cytochrome c peroxidase J4N45_22075 PF01256 Carbohydrate kinase J4N45_22075 PF03853 YjeF-related protein N-terminus J4N45_22080 PF00478 IMP dehydrogenase / GMP reductase domain J4N45_22105 PF05230 MASE2 domain J4N45_22105 PF00990 Diguanylate cyclase, GGDEF domain J4N45_22130 PF03466 LysR substrate binding domain J4N45_22130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_22145 PF00529 HlyD membrane-fusion protein of T1SS J4N45_22145 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N45_22150 PF11742 Protein of unknown function (DUF3302) J4N45_22155 PF00106 short chain dehydrogenase J4N45_22160 PF00196 Bacterial regulatory proteins, luxR family J4N45_22160 PF00072 Response regulator receiver domain J4N45_22165 PF16385 Domain of unknown function J4N45_22165 PF00884 Sulfatase J4N45_22175 PF04055 Radical SAM superfamily J4N45_22175 PF13186 Iron-sulfur cluster-binding domain J4N45_22190 PF17863 AAA lid domain J4N45_22190 PF07726 ATPase family associated with various cellular activities (AAA) J4N45_22210 PF07584 Aerotolerance regulator N-terminal J4N45_22210 PF13519 von Willebrand factor type A domain J4N45_22225 PF02321 Outer membrane efflux protein J4N45_22230 PF00873 AcrB/AcrD/AcrF family J4N45_22235 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N45_22240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_22240 PF03466 LysR substrate binding domain J4N45_22255 PF00043 Glutathione S-transferase, C-terminal domain J4N45_22255 PF02798 Glutathione S-transferase, N-terminal domain J4N45_22295 PF00248 Aldo/keto reductase family J4N45_22300 PF01551 Peptidase family M23 J4N45_22300 PF01476 LysM domain J4N45_22300 PF08525 Opacity-associated protein A N-terminal motif J4N45_22305 PF02811 PHP domain J4N45_22320 PF00884 Sulfatase J4N45_22325 PF00884 Sulfatase J4N45_22330 PF00580 UvrD/REP helicase N-terminal domain J4N45_22330 PF12462 DNA helicase IV / RNA helicase N terminal J4N45_22330 PF13361 UvrD-like helicase C-terminal domain J4N45_22335 PF12729 Four helix bundle sensory module for signal transduction J4N45_22335 PF00672 HAMP domain J4N45_22335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N45_22340 PF13419 Haloacid dehalogenase-like hydrolase J4N45_22345 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N45_22345 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J4N45_22355 PF00691 OmpA family J4N45_22355 PF18393 MotY N-terminal domain J4N45_22360 PF01268 Formate--tetrahydrofolate ligase J4N45_22365 PF00294 pfkB family carbohydrate kinase J4N45_22370 PF08448 PAS fold J4N45_22370 PF00990 Diguanylate cyclase, GGDEF domain J4N45_22385 PF13419 Haloacid dehalogenase-like hydrolase J4N45_22400 PF03222 Tryptophan/tyrosine permease family J4N45_22410 PF03831 PhnA domain J4N45_22410 PF08274 PhnA Zinc-Ribbon J4N45_22415 PF12262 Bacterial virulence factor lipase N-terminal J4N45_22420 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J4N45_22425 PF01435 Peptidase family M48 J4N45_22430 PF03061 Thioesterase superfamily J4N45_22440 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N45_22440 PF12793 Sugar transport-related sRNA regulator N-term J4N45_22465 PF00665 Integrase core domain J4N45_22470 PF00924 Mechanosensitive ion channel J4N45_22475 PF02080 TrkA-C domain J4N45_22475 PF02254 TrkA-N domain J4N45_22480 PF02386 Cation transport protein J4N45_22485 PF01641 SelR domain J4N45_22485 PF01625 Peptide methionine sulfoxide reductase J4N45_22490 PF02566 OsmC-like protein J4N45_22500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_22500 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J4N45_22500 PF00072 Response regulator receiver domain J4N45_22500 PF01627 Hpt domain J4N45_22500 PF00672 HAMP domain J4N45_22500 PF00512 His Kinase A (phospho-acceptor) domain J4N45_22505 PF00561 alpha/beta hydrolase fold J4N45_22510 PF01554 MatE J4N45_22520 PF00085 Thioredoxin J4N45_22525 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J4N45_22525 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J4N45_22560 PF11756 Nitrous oxide-stimulated promoter J4N45_22610 PF01292 Prokaryotic cytochrome b561 J4N45_22615 PF04264 YceI-like domain J4N45_22625 PF01226 Formate/nitrite transporter J4N45_22630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_22630 PF03466 LysR substrate binding domain J4N45_22635 PF06496 Protein of unknown function (DUF1097) J4N45_22640 PF11398 Protein of unknown function (DUF2813) J4N45_22645 PF02872 5'-nucleotidase, C-terminal domain J4N45_22645 PF00149 Calcineurin-like phosphoesterase J4N45_22655 PF07237 Protein of unknown function (DUF1428) J4N45_22665 PF04363 Protein of unknown function (DUF496) J4N45_22675 PF04337 Protein of unknown function, DUF480 J4N45_22680 PF01541 GIY-YIG catalytic domain J4N45_22685 PF13407 Periplasmic binding protein domain J4N45_22690 PF00072 Response regulator receiver domain J4N45_22690 PF09308 LuxQ, periplasmic J4N45_22690 PF00512 His Kinase A (phospho-acceptor) domain J4N45_22690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_22705 PF12805 FUSC-like inner membrane protein yccS J4N45_22720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_22720 PF03466 LysR substrate binding domain J4N45_22725 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family J4N45_22730 PF03073 TspO/MBR family J4N45_22735 PF01926 50S ribosome-binding GTPase J4N45_22740 PF03466 LysR substrate binding domain J4N45_22740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_22760 PF13006 Insertion element 4 transposase N-terminal J4N45_22760 PF01609 Transposase DDE domain J4N45_22780 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4N45_22780 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N45_22790 PF04143 Sulphur transport J4N45_22800 PF00529 HlyD membrane-fusion protein of T1SS J4N45_22800 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N45_22805 PF00873 AcrB/AcrD/AcrF family J4N45_22825 PF13597 Anaerobic ribonucleoside-triphosphate reductase J4N45_22825 PF03477 ATP cone domain J4N45_22835 PF00155 Aminotransferase class I and II J4N45_22840 PF08443 RimK-like ATP-grasp domain J4N45_22840 PF18030 RimK PreATP-grasp domain J4N45_22850 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J4N45_22850 PF07685 CobB/CobQ-like glutamine amidotransferase domain J4N45_22860 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_22865 PF03459 TOBE domain J4N45_22865 PF00005 ABC transporter J4N45_22875 PF17151 Periplasmic sensor domain J4N45_22875 PF00990 Diguanylate cyclase, GGDEF domain J4N45_22885 PF07694 5TMR of 5TMR-LYT J4N45_22885 PF00990 Diguanylate cyclase, GGDEF domain J4N45_22900 PF01262 Alanine dehydrogenase/PNT, C-terminal domain J4N45_22900 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch J4N45_22900 PF05222 Alanine dehydrogenase/PNT, N-terminal domain J4N45_22905 PF02233 NAD(P) transhydrogenase beta subunit J4N45_22915 PF00072 Response regulator receiver domain J4N45_22915 PF00486 Transcriptional regulatory protein, C terminal J4N45_22930 PF03701 Uncharacterised protein family (UPF0181) J4N45_22935 PF01253 Translation initiation factor SUI1 J4N45_22945 PF02899 Phage integrase, N-terminal SAM-like domain J4N45_22945 PF00589 Phage integrase family J4N45_22950 PF07478 D-ala D-ala ligase C-terminus J4N45_22950 PF01820 D-ala D-ala ligase N-terminus J4N45_22960 PF13607 Succinyl-CoA ligase like flavodoxin domain J4N45_22960 PF00583 Acetyltransferase (GNAT) family J4N45_22960 PF13380 CoA binding domain J4N45_22965 PF03466 LysR substrate binding domain J4N45_22965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_22970 PF04886 PT repeat J4N45_22970 PF07715 TonB-dependent Receptor Plug Domain J4N45_22970 PF00593 TonB dependent receptor J4N45_23010 PF00072 Response regulator receiver domain J4N45_23010 PF00512 His Kinase A (phospho-acceptor) domain J4N45_23010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_23010 PF01627 Hpt domain J4N45_23010 PF00672 HAMP domain J4N45_23015 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family J4N45_23020 PF02142 MGS-like domain J4N45_23025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_23025 PF03466 LysR substrate binding domain J4N45_23035 PF18030 RimK PreATP-grasp domain J4N45_23035 PF08443 RimK-like ATP-grasp domain J4N45_23045 PF08443 RimK-like ATP-grasp domain J4N45_23045 PF18030 RimK PreATP-grasp domain J4N45_23050 PF16363 GDP-mannose 4,6 dehydratase J4N45_23055 PF01494 FAD binding domain J4N45_23065 PF00005 ABC transporter J4N45_23070 PF13472 GDSL-like Lipase/Acylhydrolase family J4N45_23075 PF12241 Trans-2-enoyl-CoA reductase catalytic region J4N45_23075 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase J4N45_23075 PF07055 Enoyl reductase FAD binding domain J4N45_23080 PF00990 Diguanylate cyclase, GGDEF domain J4N45_23080 PF03707 Bacterial signalling protein N terminal repeat J4N45_23080 PF00563 EAL domain J4N45_23090 PF01556 DnaJ C terminal domain J4N45_23090 PF00684 DnaJ central domain J4N45_23090 PF00226 DnaJ domain J4N45_23100 PF00793 DAHP synthetase I family J4N45_23105 PF05193 Peptidase M16 inactive domain J4N45_23105 PF00675 Insulinase (Peptidase family M16) J4N45_23110 PF18081 Fanconi anemia-associated nuclease SAP domain J4N45_23110 PF08774 VRR-NUC domain J4N45_23115 PF01575 MaoC like domain J4N45_23135 PF03466 LysR substrate binding domain J4N45_23135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_23155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_23155 PF03466 LysR substrate binding domain J4N45_23170 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J4N45_23180 PF03480 Bacterial extracellular solute-binding protein, family 7 J4N45_23185 PF03793 PASTA domain J4N45_23185 PF00069 Protein kinase domain J4N45_23220 PF00004 ATPase family associated with various cellular activities (AAA) J4N45_23220 PF07724 AAA domain (Cdc48 subfamily) J4N45_23220 PF17871 AAA lid domain J4N45_23220 PF10431 C-terminal, D2-small domain, of ClpB protein J4N45_23245 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath J4N45_23260 PF06812 ImpA, N-terminal, type VI secretion system J4N45_23280 PF06715 Gp5 C-terminal repeat (3 copies) J4N45_23280 PF04717 Type VI secretion system, phage-baseplate injector J4N45_23290 PF07690 Major Facilitator Superfamily J4N45_23300 PF11849 Domain of unknown function (DUF3369) J4N45_23305 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N45_23305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_23305 PF00512 His Kinase A (phospho-acceptor) domain J4N45_23325 PF13006 Insertion element 4 transposase N-terminal J4N45_23325 PF01609 Transposase DDE domain J4N45_23415 PF03466 LysR substrate binding domain J4N45_23415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_23420 PF07690 Major Facilitator Superfamily J4N45_23430 PF00107 Zinc-binding dehydrogenase J4N45_23430 PF08240 Alcohol dehydrogenase GroES-like domain J4N45_23435 PF00155 Aminotransferase class I and II J4N45_23440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_23440 PF03466 LysR substrate binding domain J4N45_23445 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N45_23450 PF00676 Dehydrogenase E1 component J4N45_23455 PF02779 Transketolase, pyrimidine binding domain J4N45_23455 PF02780 Transketolase, C-terminal domain J4N45_23460 PF02817 e3 binding domain J4N45_23460 PF00364 Biotin-requiring enzyme J4N45_23460 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J4N45_23465 PF00128 Alpha amylase, catalytic domain J4N45_23465 PF01373 Glycosyl hydrolase family 14 J4N45_23465 PF03423 Carbohydrate binding domain (family 25) J4N45_23470 PF00128 Alpha amylase, catalytic domain J4N45_23470 PF02806 Alpha amylase, C-terminal all-beta domain J4N45_23490 PF01012 Electron transfer flavoprotein domain J4N45_23490 PF00766 Electron transfer flavoprotein FAD-binding domain J4N45_23495 PF01012 Electron transfer flavoprotein domain J4N45_23535 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J4N45_23535 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J4N45_23540 PF00378 Enoyl-CoA hydratase/isomerase J4N45_23545 PF00378 Enoyl-CoA hydratase/isomerase J4N45_23550 PF02770 Acyl-CoA dehydrogenase, middle domain J4N45_23550 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J4N45_23550 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J4N45_23555 PF00171 Aldehyde dehydrogenase family J4N45_23560 PF02803 Thiolase, C-terminal domain J4N45_23560 PF00108 Thiolase, N-terminal domain J4N45_23565 PF00376 MerR family regulatory protein J4N45_23565 PF09278 MerR, DNA binding J4N45_23570 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J4N45_23570 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J4N45_23570 PF02770 Acyl-CoA dehydrogenase, middle domain J4N45_23575 PF01039 Carboxyl transferase domain J4N45_23580 PF00378 Enoyl-CoA hydratase/isomerase J4N45_23585 PF00682 HMGL-like J4N45_23600 PF00990 Diguanylate cyclase, GGDEF domain J4N45_23600 PF17156 Gammaproteobacterial periplasmic sensor domain J4N45_23605 PF00871 Acetokinase family J4N45_23610 PF00270 DEAD/DEAH box helicase J4N45_23610 PF00271 Helicase conserved C-terminal domain J4N45_23610 PF03880 DbpA RNA binding domain J4N45_23615 PF08206 Ribonuclease B OB domain J4N45_23615 PF00773 RNB domain J4N45_23615 PF00575 S1 RNA binding domain J4N45_23625 PF12849 PBP superfamily domain J4N45_23630 PF01906 Putative heavy-metal-binding J4N45_23635 PF18494 Pullulanase Ins domain J4N45_23635 PF17967 Pullulanase N2 domain J4N45_23635 PF03714 Bacterial pullanase-associated domain J4N45_23635 PF11852 Domain of unknown function (DUF3372) J4N45_23635 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J4N45_23660 PF03441 FAD binding domain of DNA photolyase J4N45_23660 PF00875 DNA photolyase J4N45_23670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_23670 PF03466 LysR substrate binding domain J4N45_23675 PF07670 Nucleoside recognition J4N45_23675 PF07662 Na+ dependent nucleoside transporter C-terminus J4N45_23675 PF01773 Na+ dependent nucleoside transporter N-terminus J4N45_23680 PF05762 VWA domain containing CoxE-like protein J4N45_23685 PF07728 AAA domain (dynein-related subfamily) J4N45_23685 PF17868 AAA lid domain J4N45_23685 PF12592 Protein of unknown function (DUF3763) J4N45_23690 PF05762 VWA domain containing CoxE-like protein J4N45_23700 PF01212 Beta-eliminating lyase J4N45_23705 PF00034 Cytochrome c J4N45_23710 PF13520 Amino acid permease J4N45_23715 PF00881 Nitroreductase family J4N45_23725 PF03334 Na+/H+ antiporter subunit J4N45_23730 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) J4N45_23735 PF01899 Na+/H+ ion antiporter subunit J4N45_23740 PF00361 Proton-conducting membrane transporter J4N45_23745 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L J4N45_23750 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter J4N45_23750 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J4N45_23750 PF00361 Proton-conducting membrane transporter J4N45_23750 PF13244 Domain of unknown function (DUF4040) J4N45_23760 PF00582 Universal stress protein family J4N45_23765 PF00270 DEAD/DEAH box helicase J4N45_23765 PF00271 Helicase conserved C-terminal domain J4N45_23770 PF04336 Acyl carrier protein phosphodiesterase J4N45_23785 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 J4N45_23800 PF01136 Peptidase family U32 J4N45_23800 PF16325 Peptidase family U32 C-terminal domain J4N45_23815 PF01523 Putative modulator of DNA gyrase J4N45_23820 PF01523 Putative modulator of DNA gyrase J4N45_23835 PF02696 Uncharacterized ACR, YdiU/UPF0061 family J4N45_23840 PF07690 Major Facilitator Superfamily J4N45_23845 PF00356 Bacterial regulatory proteins, lacI family J4N45_23850 PF00294 pfkB family carbohydrate kinase J4N45_23855 PF13407 Periplasmic binding protein domain J4N45_23860 PF02653 Branched-chain amino acid transport system / permease component J4N45_23865 PF00005 ABC transporter J4N45_23870 PF05025 RbsD / FucU transport protein family J4N45_23875 PF00563 EAL domain J4N45_23875 PF00990 Diguanylate cyclase, GGDEF domain J4N45_23875 PF03707 Bacterial signalling protein N terminal repeat J4N45_23880 PF14602 Hexapeptide repeat of succinyl-transferase J4N45_23880 PF12464 Maltose acetyltransferase J4N45_23890 PF02798 Glutathione S-transferase, N-terminal domain J4N45_23890 PF00043 Glutathione S-transferase, C-terminal domain J4N45_23900 PF03616 Sodium/glutamate symporter J4N45_23910 PF13186 Iron-sulfur cluster-binding domain J4N45_23910 PF04055 Radical SAM superfamily J4N45_23915 PF03781 Sulfatase-modifying factor enzyme 1 J4N45_23925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_23925 PF03466 LysR substrate binding domain J4N45_23930 PF00672 HAMP domain J4N45_23930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N45_23930 PF02743 Cache domain J4N45_23945 PF00117 Glutamine amidotransferase class-I J4N45_23945 PF00958 GMP synthase C terminal domain J4N45_23950 PF00171 Aldehyde dehydrogenase family J4N45_23955 PF00202 Aminotransferase class-III J4N45_23965 PF00171 Aldehyde dehydrogenase family J4N45_23970 PF01427 D-ala-D-ala dipeptidase J4N45_24005 PF12843 Putative quorum-sensing-regulated virulence factor J4N45_24020 PF04993 TfoX N-terminal domain J4N45_24020 PF04994 TfoX C-terminal domain J4N45_24040 PF01875 Memo-like protein J4N45_24050 PF00293 NUDIX domain J4N45_24055 PF00483 Nucleotidyl transferase J4N45_24065 PF00465 Iron-containing alcohol dehydrogenase J4N45_24075 PF00121 Triosephosphate isomerase J4N45_24080 PF02734 DAK2 domain J4N45_24085 PF02733 Dak1 domain J4N45_24090 PF02502 Ribose/Galactose Isomerase J4N45_24095 PF00392 Bacterial regulatory proteins, gntR family J4N45_24095 PF07729 FCD domain J4N45_24100 PF00456 Transketolase, thiamine diphosphate binding domain J4N45_24105 PF02780 Transketolase, C-terminal domain J4N45_24105 PF02779 Transketolase, pyrimidine binding domain J4N45_24130 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J4N45_24130 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N45_24135 PF01263 Aldose 1-epimerase J4N45_24140 PF00005 ABC transporter J4N45_24140 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N45_24145 PF00005 ABC transporter J4N45_24145 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N45_24150 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N45_24155 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_24155 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N45_24160 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_24170 PF07729 FCD domain J4N45_24170 PF00392 Bacterial regulatory proteins, gntR family J4N45_24175 PF00890 FAD binding domain J4N45_24175 PF04205 FMN-binding domain J4N45_24175 PF03358 NADPH-dependent FMN reductase J4N45_24185 PF00072 Response regulator receiver domain J4N45_24185 PF00486 Transcriptional regulatory protein, C terminal J4N45_24190 PF00512 His Kinase A (phospho-acceptor) domain J4N45_24190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_24200 PF04303 PrpF protein J4N45_24210 PF01970 Tripartite tricarboxylate transporter TctA family J4N45_24250 PF07690 Major Facilitator Superfamily J4N45_24255 PF00356 Bacterial regulatory proteins, lacI family J4N45_24260 PF01263 Aldose 1-epimerase J4N45_24265 PF00288 GHMP kinases N terminal domain J4N45_24265 PF10509 Galactokinase galactose-binding signature J4N45_24265 PF08544 GHMP kinases C terminal J4N45_24270 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain J4N45_24270 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain J4N45_24275 PF16363 GDP-mannose 4,6 dehydratase J4N45_24285 PF01306 LacY proton/sugar symporter J4N45_24290 PF02615 Malate/L-lactate dehydrogenase J4N45_24300 PF16355 Domain of unknown function (DUF4982) J4N45_24300 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 J4N45_24300 PF02837 Glycosyl hydrolases family 2, sugar binding domain J4N45_24300 PF00703 Glycosyl hydrolases family 2 J4N45_24300 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J4N45_24310 PF00703 Glycosyl hydrolases family 2 J4N45_24310 PF02837 Glycosyl hydrolases family 2, sugar binding domain J4N45_24310 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J4N45_24315 PF01614 Bacterial transcriptional regulator J4N45_24315 PF09339 IclR helix-turn-helix domain J4N45_24320 PF02615 Malate/L-lactate dehydrogenase J4N45_24325 PF08240 Alcohol dehydrogenase GroES-like domain J4N45_24325 PF00107 Zinc-binding dehydrogenase J4N45_24330 PF01232 Mannitol dehydrogenase Rossmann domain J4N45_24330 PF08125 Mannitol dehydrogenase C-terminal domain J4N45_24335 PF00294 pfkB family carbohydrate kinase J4N45_24340 PF01081 KDPG and KHG aldolase J4N45_24345 PF13378 Enolase C-terminal domain-like J4N45_24345 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J4N45_24355 PF00652 Ricin-type beta-trefoil lectin domain J4N45_24360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N45_24360 PF00672 HAMP domain J4N45_24375 PF17992 Agarase CBM like domain J4N45_24375 PF02449 Beta-galactosidase J4N45_24385 PF00171 Aldehyde dehydrogenase family J4N45_24395 PF00392 Bacterial regulatory proteins, gntR family J4N45_24395 PF07729 FCD domain J4N45_24400 PF00171 Aldehyde dehydrogenase family J4N45_24405 PF17912 MalK OB fold domain J4N45_24405 PF00005 ABC transporter J4N45_24415 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_24420 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_24425 PF00083 Sugar (and other) transporter J4N45_24450 PF17992 Agarase CBM like domain J4N45_24450 PF02449 Beta-galactosidase J4N45_24455 PF02449 Beta-galactosidase J4N45_24455 PF17992 Agarase CBM like domain J4N45_24465 PF12167 Arm DNA-binding domain J4N45_24465 PF00589 Phage integrase family J4N45_24485 PF08028 Acyl-CoA dehydrogenase, C-terminal domain J4N45_24495 PF00171 Aldehyde dehydrogenase family J4N45_24500 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase J4N45_24505 PF03547 Membrane transport protein J4N45_24515 PF00171 Aldehyde dehydrogenase family J4N45_24520 PF01557 Fumarylacetoacetate (FAA) hydrolase family J4N45_24525 PF01557 Fumarylacetoacetate (FAA) hydrolase family J4N45_24530 PF03328 HpcH/HpaI aldolase/citrate lyase family J4N45_24535 PF01557 Fumarylacetoacetate (FAA) hydrolase family J4N45_24550 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J4N45_24555 PF01047 MarR family J4N45_24560 PF01613 Flavin reductase like domain J4N45_24565 PF00106 short chain dehydrogenase J4N45_24575 PF00202 Aminotransferase class-III J4N45_24580 PF00392 Bacterial regulatory proteins, gntR family J4N45_24580 PF00155 Aminotransferase class I and II J4N45_24585 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N45_24585 PF01464 Transglycosylase SLT domain J4N45_24595 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_24600 PF00005 ABC transporter J4N45_24615 PF00313 'Cold-shock' DNA-binding domain J4N45_24620 PF07152 YaeQ protein J4N45_24630 PF00042 Globin J4N45_24630 PF00970 Oxidoreductase FAD-binding domain J4N45_24630 PF00175 Oxidoreductase NAD-binding domain J4N45_24635 PF01590 GAF domain J4N45_24635 PF00158 Sigma-54 interaction domain J4N45_24645 PF00117 Glutamine amidotransferase class-I J4N45_24645 PF00958 GMP synthase C terminal domain J4N45_24655 PF08007 Cupin superfamily protein J4N45_24665 PF07670 Nucleoside recognition J4N45_24670 PF07670 Nucleoside recognition J4N45_24675 PF12729 Four helix bundle sensory module for signal transduction J4N45_24675 PF00672 HAMP domain J4N45_24675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N45_24680 PF03466 LysR substrate binding domain J4N45_24680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_24700 PF00722 Glycosyl hydrolases family 16 J4N45_24700 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) J4N45_24710 PF00722 Glycosyl hydrolases family 16 J4N45_24715 PF00005 ABC transporter J4N45_24715 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N45_24720 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N45_24720 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_24725 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_24730 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N45_24735 PF00990 Diguanylate cyclase, GGDEF domain J4N45_24750 PF02264 LamB porin J4N45_24755 PF00356 Bacterial regulatory proteins, lacI family J4N45_24765 PF00005 ABC transporter J4N45_24765 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N45_24770 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N45_24770 PF00005 ABC transporter J4N45_24775 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N45_24775 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_24780 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_24785 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N45_24795 PF00933 Glycosyl hydrolase family 3 N terminal domain J4N45_24795 PF01915 Glycosyl hydrolase family 3 C-terminal domain J4N45_24795 PF14310 Fibronectin type III-like domain J4N45_24825 PF03466 LysR substrate binding domain J4N45_24825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_24830 PF00933 Glycosyl hydrolase family 3 N terminal domain J4N45_24830 PF14310 Fibronectin type III-like domain J4N45_24830 PF01915 Glycosyl hydrolase family 3 C-terminal domain J4N45_24835 PF00005 ABC transporter J4N45_24835 PF00664 ABC transporter transmembrane region J4N45_24840 PF13302 Acetyltransferase (GNAT) domain J4N45_24855 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J4N45_24855 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J4N45_24860 PF00144 Beta-lactamase J4N45_24895 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N45_24895 PF12793 Sugar transport-related sRNA regulator N-term J4N45_24900 PF00232 Glycosyl hydrolase family 1 J4N45_24910 PF02018 Carbohydrate binding domain J4N45_24910 PF02927 Cellulase N-terminal ig-like domain J4N45_24910 PF00759 Glycosyl hydrolase family 9 J4N45_24915 PF00356 Bacterial regulatory proteins, lacI family J4N45_24915 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family J4N45_24920 PF00381 PTS HPr component phosphorylation site J4N45_24920 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N45_24925 PF00294 pfkB family carbohydrate kinase J4N45_24930 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N45_24930 PF02378 Phosphotransferase system, EIIC J4N45_24955 PF08669 Glycine cleavage T-protein C-terminal barrel domain J4N45_24955 PF01571 Aminomethyltransferase folate-binding domain J4N45_24965 PF00464 Serine hydroxymethyltransferase J4N45_24970 PF01597 Glycine cleavage H-protein J4N45_24975 PF02347 Glycine cleavage system P-protein J4N45_24990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_24990 PF03466 LysR substrate binding domain J4N45_25000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_25000 PF03466 LysR substrate binding domain J4N45_25020 PF09905 DNA-binding protein VF530 J4N45_25025 PF00271 Helicase conserved C-terminal domain J4N45_25025 PF00270 DEAD/DEAH box helicase J4N45_25030 PF00005 ABC transporter J4N45_25030 PF17912 MalK OB fold domain J4N45_25030 PF03459 TOBE domain J4N45_25035 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_25040 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_25045 PF01547 Bacterial extracellular solute-binding protein J4N45_25050 PF00356 Bacterial regulatory proteins, lacI family J4N45_25055 PF00128 Alpha amylase, catalytic domain J4N45_25065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_25065 PF00072 Response regulator receiver domain J4N45_25080 PF01734 Patatin-like phospholipase J4N45_25090 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J4N45_25095 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component J4N45_25100 PF03480 Bacterial extracellular solute-binding protein, family 7 J4N45_25105 PF08787 Alginate lyase J4N45_25135 PF07702 UTRA domain J4N45_25135 PF00392 Bacterial regulatory proteins, gntR family J4N45_25140 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J4N45_25140 PF13378 Enolase C-terminal domain-like J4N45_25145 PF00367 phosphotransferase system, EIIB J4N45_25145 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 J4N45_25145 PF02378 Phosphotransferase system, EIIC J4N45_25155 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J4N45_25160 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N45_25165 PF05175 Methyltransferase small domain J4N45_25170 PF12833 Helix-turn-helix domain J4N45_25175 PF01645 Conserved region in glutamate synthase J4N45_25175 PF13187 4Fe-4S dicluster domain J4N45_25185 PF00072 Response regulator receiver domain J4N45_25185 PF00158 Sigma-54 interaction domain J4N45_25185 PF02954 Bacterial regulatory protein, Fis family J4N45_25190 PF00392 Bacterial regulatory proteins, gntR family J4N45_25190 PF07702 UTRA domain J4N45_25195 PF00232 Glycosyl hydrolase family 1 J4N45_25205 PF11490 DNA polymerase III polC-type N-terminus II J4N45_25205 PF00929 Exonuclease J4N45_25205 PF02811 PHP domain J4N45_25205 PF14579 Helix-hairpin-helix motif J4N45_25205 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J4N45_25205 PF14480 DNA polymerase III polC-type N-terminus I J4N45_25205 PF07733 Bacterial DNA polymerase III alpha NTPase domain J4N45_25210 PF00892 EamA-like transporter family J4N45_25240 PF00892 EamA-like transporter family J4N45_25245 PF02378 Phosphotransferase system, EIIC J4N45_25250 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N45_25255 PF02378 Phosphotransferase system, EIIC J4N45_25260 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit J4N45_25265 PF00356 Bacterial regulatory proteins, lacI family J4N45_25295 PF00571 CBS domain J4N45_25295 PF00291 Pyridoxal-phosphate dependent enzyme J4N45_25320 PF16657 Maltogenic Amylase, C-terminal domain J4N45_25320 PF02903 Alpha amylase, N-terminal ig-like domain J4N45_25320 PF00128 Alpha amylase, catalytic domain J4N45_25325 PF01547 Bacterial extracellular solute-binding protein J4N45_25335 PF16657 Maltogenic Amylase, C-terminal domain J4N45_25335 PF00128 Alpha amylase, catalytic domain J4N45_25340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_25360 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_25365 PF14785 Maltose transport system permease protein MalF P2 domain J4N45_25365 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_25370 PF01547 Bacterial extracellular solute-binding protein J4N45_25375 PF00005 ABC transporter J4N45_25375 PF08402 TOBE domain J4N45_25405 PF03783 Curli production assembly/transport component CsgG J4N45_25415 PF00196 Bacterial regulatory proteins, luxR family J4N45_25420 PF00196 Bacterial regulatory proteins, luxR family J4N45_25430 PF07726 ATPase family associated with various cellular activities (AAA) J4N45_25430 PF17863 AAA lid domain J4N45_25435 PF01882 Protein of unknown function DUF58 J4N45_25450 PF07584 Aerotolerance regulator N-terminal J4N45_25450 PF13519 von Willebrand factor type A domain J4N45_25460 PF13609 Gram-negative porin J4N45_25465 PF00267 Gram-negative porin J4N45_25470 PF13609 Gram-negative porin J4N45_25475 PF00267 Gram-negative porin J4N45_25480 PF13609 Gram-negative porin J4N45_25490 PF03606 C4-dicarboxylate anaerobic carrier J4N45_25495 PF00892 EamA-like transporter family J4N45_25500 PF00462 Glutaredoxin J4N45_25505 PF00196 Bacterial regulatory proteins, luxR family J4N45_25505 PF00072 Response regulator receiver domain J4N45_25510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_25510 PF03466 LysR substrate binding domain J4N45_25515 PF00990 Diguanylate cyclase, GGDEF domain J4N45_25520 PF03466 LysR substrate binding domain J4N45_25520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_25525 PF03606 C4-dicarboxylate anaerobic carrier J4N45_25540 PF00873 AcrB/AcrD/AcrF family J4N45_25545 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N45_25550 PF03150 Di-haem cytochrome c peroxidase J4N45_25550 PF00034 Cytochrome c J4N45_25555 PF00072 Response regulator receiver domain J4N45_25555 PF09308 LuxQ, periplasmic J4N45_25555 PF00512 His Kinase A (phospho-acceptor) domain J4N45_25555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_25565 PF00990 Diguanylate cyclase, GGDEF domain J4N45_25575 PF02838 Glycosyl hydrolase family 20, domain 2 J4N45_25575 PF00728 Glycosyl hydrolase family 20, catalytic domain J4N45_25585 PF00474 Sodium:solute symporter family J4N45_25595 PF07969 Amidohydrolase family J4N45_25605 PF02685 Glucokinase J4N45_25605 PF01380 SIS domain J4N45_25605 PF01418 Helix-turn-helix domain, rpiR family J4N45_25625 PF00128 Alpha amylase, catalytic domain J4N45_25630 PF10928 Protein of unknown function (DUF2810) J4N45_25635 PF07670 Nucleoside recognition J4N45_25635 PF01773 Na+ dependent nucleoside transporter N-terminus J4N45_25635 PF07662 Na+ dependent nucleoside transporter C-terminus J4N45_25640 PF01048 Phosphorylase superfamily J4N45_25645 PF01979 Amidohydrolase family J4N45_25655 PF00072 Response regulator receiver domain J4N45_25655 PF01584 CheW-like domain J4N45_25665 PF00912 Transglycosylase J4N45_25670 PF07690 Major Facilitator Superfamily J4N45_25675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_25675 PF03466 LysR substrate binding domain J4N45_25685 PF02525 Flavodoxin-like fold J4N45_25705 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N45_25705 PF00970 Oxidoreductase FAD-binding domain J4N45_25705 PF00175 Oxidoreductase NAD-binding domain J4N45_25710 PF03063 Prismane/CO dehydrogenase family J4N45_25715 PF00005 ABC transporter J4N45_25720 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_25725 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N45_25730 PF00528 Binding-protein-dependent transport system inner membrane component J4N45_25735 PF01040 UbiA prenyltransferase family J4N45_25740 PF02628 Cytochrome oxidase assembly protein J4N45_25760 PF00510 Cytochrome c oxidase subunit III J4N45_25765 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 J4N45_25770 PF00115 Cytochrome C and Quinol oxidase polypeptide I J4N45_25775 PF02790 Cytochrome C oxidase subunit II, transmembrane domain J4N45_25775 PF00116 Cytochrome C oxidase subunit II, periplasmic domain J4N45_25785 PF01557 Fumarylacetoacetate (FAA) hydrolase family J4N45_25790 PF07702 UTRA domain J4N45_25790 PF00392 Bacterial regulatory proteins, gntR family J4N45_25795 PF01979 Amidohydrolase family J4N45_25800 PF00491 Arginase family J4N45_25805 PF01175 Urocanase Rossmann-like domain J4N45_25805 PF17392 Urocanase C-terminal domain J4N45_25805 PF17391 Urocanase N-terminal domain J4N45_25810 PF00221 Aromatic amino acid lyase J4N45_25815 PF18416 N-acetylglucosamine binding protein domain 2 J4N45_25815 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading J4N45_25835 PF00037 4Fe-4S binding domain J4N45_25835 PF11953 Domain of unknown function (DUF3470) J4N45_25840 PF00588 SpoU rRNA Methylase family J4N45_25840 PF08032 RNA 2'-O ribose methyltransferase substrate binding J4N45_25845 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin J4N45_25850 PF07969 Amidohydrolase family J4N45_25855 PF00313 'Cold-shock' DNA-binding domain J4N45_25865 PF17944 Arginine decarboxylase C-terminal helical extension J4N45_25865 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J4N45_25865 PF17810 Arginine decarboxylase helical bundle domain J4N45_25870 PF00491 Arginase family J4N45_25880 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) J4N45_25895 PF08787 Alginate lyase J4N45_25900 PF00171 Aldehyde dehydrogenase family J4N45_25910 PF00171 Aldehyde dehydrogenase family J4N45_25915 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J4N45_25915 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain J4N45_25930 PF01965 DJ-1/PfpI family J4N45_25940 PF07238 PilZ domain J4N45_25940 PF12945 Flagellar protein YcgR J4N45_25945 PF05362 Lon protease (S16) C-terminal proteolytic domain J4N45_25945 PF13654 AAA domain J4N45_25965 PF02469 Fasciclin domain J4N45_25985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_26000 PF00892 EamA-like transporter family J4N45_26005 PF13091 PLD-like domain J4N45_26015 PF00672 HAMP domain J4N45_26015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N45_26025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_26025 PF03466 LysR substrate binding domain J4N45_26030 PF13186 Iron-sulfur cluster-binding domain J4N45_26030 PF04055 Radical SAM superfamily J4N45_26045 PF00884 Sulfatase J4N45_26060 PF00491 Arginase family J4N45_26070 PF00005 ABC transporter J4N45_26075 PF01032 FecCD transport family J4N45_26080 PF01032 FecCD transport family J4N45_26085 PF01497 Periplasmic binding protein J4N45_26090 PF00392 Bacterial regulatory proteins, gntR family J4N45_26090 PF07702 UTRA domain J4N45_26095 PF00990 Diguanylate cyclase, GGDEF domain J4N45_26095 PF17156 Gammaproteobacterial periplasmic sensor domain J4N45_26100 PF07690 Major Facilitator Superfamily J4N45_26110 PF00005 ABC transporter J4N45_26110 PF12848 ABC transporter J4N45_26130 PF04225 Opacity-associated protein A LysM-like domain J4N45_26130 PF01551 Peptidase family M23 J4N45_26135 PF02028 BCCT, betaine/carnitine/choline family transporter J4N45_26150 PF07670 Nucleoside recognition J4N45_26170 PF00251 Glycosyl hydrolases family 32 N-terminal domain J4N45_26170 PF08244 Glycosyl hydrolases family 32 C terminal J4N45_26175 PF00367 phosphotransferase system, EIIB J4N45_26175 PF02378 Phosphotransferase system, EIIC J4N45_26180 PF00392 Bacterial regulatory proteins, gntR family J4N45_26180 PF07702 UTRA domain J4N45_26185 PF00356 Bacterial regulatory proteins, lacI family J4N45_26185 PF13407 Periplasmic binding protein domain J4N45_26190 PF00294 pfkB family carbohydrate kinase J4N45_26200 PF12801 4Fe-4S binding domain J4N45_26200 PF12837 4Fe-4S binding domain J4N45_26205 PF12800 4Fe-4S binding domain J4N45_26205 PF12838 4Fe-4S dicluster domain J4N45_26215 PF01551 Peptidase family M23 J4N45_26215 PF04225 Opacity-associated protein A LysM-like domain J4N45_26220 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J4N45_26230 PF00005 ABC transporter J4N45_26240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_26240 PF03466 LysR substrate binding domain J4N45_26245 PF00171 Aldehyde dehydrogenase family J4N45_26250 PF00294 pfkB family carbohydrate kinase J4N45_26255 PF13407 Periplasmic binding protein domain J4N45_26260 PF00005 ABC transporter J4N45_26265 PF02653 Branched-chain amino acid transport system / permease component J4N45_26290 PF04298 Putative neutral zinc metallopeptidase J4N45_26295 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J4N45_26295 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J4N45_26300 PF04962 KduI/IolB family J4N45_26305 PF01261 Xylose isomerase-like TIM barrel J4N45_26315 PF01116 Fructose-bisphosphate aldolase class-II J4N45_26325 PF00294 pfkB family carbohydrate kinase J4N45_26330 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J4N45_26330 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J4N45_26335 PF00205 Thiamine pyrophosphate enzyme, central domain J4N45_26335 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J4N45_26335 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J4N45_26340 PF01261 Xylose isomerase-like TIM barrel J4N45_26345 PF00083 Sugar (and other) transporter J4N45_26350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_26350 PF03466 LysR substrate binding domain J4N45_26365 PF02803 Thiolase, C-terminal domain J4N45_26365 PF00108 Thiolase, N-terminal domain J4N45_26370 PF01144 Coenzyme A transferase J4N45_26375 PF01144 Coenzyme A transferase J4N45_26395 PF02264 LamB porin J4N45_26405 PF02264 LamB porin J4N45_26410 PF00128 Alpha amylase, catalytic domain J4N45_26410 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J4N45_26415 PF00990 Diguanylate cyclase, GGDEF domain J4N45_26415 PF00563 EAL domain J4N45_26415 PF03707 Bacterial signalling protein N terminal repeat J4N45_26420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_26420 PF03466 LysR substrate binding domain J4N45_26430 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) J4N45_26435 PF13472 GDSL-like Lipase/Acylhydrolase family J4N45_26440 PF00939 Sodium:sulfate symporter transmembrane region J4N45_26460 PF02110 Hydroxyethylthiazole kinase family J4N45_26465 PF02581 Thiamine monophosphate synthase J4N45_26480 PF03600 Citrate transporter J4N45_26510 PF00155 Aminotransferase class I and II J4N45_26510 PF00392 Bacterial regulatory proteins, gntR family J4N45_26535 PF00210 Ferritin-like domain J4N45_26545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_26545 PF03466 LysR substrate binding domain J4N45_26550 PF00248 Aldo/keto reductase family J4N45_26555 PF03928 Haem-degrading J4N45_26560 PF01554 MatE J4N45_26575 PF03466 LysR substrate binding domain J4N45_26575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_26580 PF02311 AraC-like ligand binding domain J4N45_26580 PF12833 Helix-turn-helix domain J4N45_26585 PF00561 alpha/beta hydrolase fold J4N45_26595 PF13649 Methyltransferase domain J4N45_26600 PF02678 Pirin J4N45_26600 PF17954 Quercetinase C-terminal cupin domain J4N45_26610 PF02525 Flavodoxin-like fold J4N45_26625 PF00664 ABC transporter transmembrane region J4N45_26625 PF00005 ABC transporter J4N45_26630 PF03605 Anaerobic c4-dicarboxylate membrane transporter J4N45_26635 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N45_26640 PF04209 homogentisate 1,2-dioxygenase J4N45_26650 PF02798 Glutathione S-transferase, N-terminal domain J4N45_26650 PF14497 Glutathione S-transferase, C-terminal domain J4N45_26660 PF00149 Calcineurin-like phosphoesterase J4N45_26660 PF02872 5'-nucleotidase, C-terminal domain J4N45_26690 PF00873 AcrB/AcrD/AcrF family J4N45_26705 PF01177 Asp/Glu/Hydantoin racemase J4N45_26715 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J4N45_26715 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J4N45_26715 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J4N45_26715 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J4N45_26720 PF07690 Major Facilitator Superfamily J4N45_26725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_26725 PF03466 LysR substrate binding domain J4N45_26735 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N45_26745 PF01368 DHH family J4N45_26745 PF02833 DHHA2 domain J4N45_26760 PF02630 SCO1/SenC J4N45_26770 PF03193 RsgA GTPase J4N45_26775 PF00672 HAMP domain J4N45_26775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N45_26775 PF00512 His Kinase A (phospho-acceptor) domain J4N45_26780 PF00486 Transcriptional regulatory protein, C terminal J4N45_26780 PF00072 Response regulator receiver domain J4N45_26800 PF02770 Acyl-CoA dehydrogenase, middle domain J4N45_26800 PF09317 Domain of unknown function (DUF1974) J4N45_26800 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J4N45_26800 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J4N45_26805 PF00440 Bacterial regulatory proteins, tetR family J4N45_26815 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus J4N45_26820 PF01575 MaoC like domain J4N45_26825 PF00375 Sodium:dicarboxylate symporter family J4N45_26835 PF01037 Lrp/AsnC ligand binding domain J4N45_26845 PF00873 AcrB/AcrD/AcrF family J4N45_26850 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N45_26865 PF02378 Phosphotransferase system, EIIC J4N45_26865 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N45_26865 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N45_26870 PF12833 Helix-turn-helix domain J4N45_26880 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N45_26885 PF02525 Flavodoxin-like fold J4N45_26895 PF02525 Flavodoxin-like fold J4N45_26900 PF12833 Helix-turn-helix domain J4N45_26905 PF06751 Ethanolamine ammonia lyase large subunit (EutB) J4N45_26910 PF05985 Ethanolamine ammonia-lyase light chain (EutC) J4N45_26915 PF13520 Amino acid permease J4N45_26925 PF01638 HxlR-like helix-turn-helix J4N45_26935 PF07690 Major Facilitator Superfamily J4N45_26940 PF03594 Benzoate membrane transport protein J4N45_26945 PF07883 Cupin domain J4N45_26945 PF01381 Helix-turn-helix J4N45_26955 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N45_26960 PF00155 Aminotransferase class I and II J4N45_26965 PF00144 Beta-lactamase J4N45_26980 PF00474 Sodium:solute symporter family J4N45_26990 PF18327 Proline utilization A proline dehydrogenase N-terminal domain J4N45_26990 PF00171 Aldehyde dehydrogenase family J4N45_26990 PF01619 Proline dehydrogenase J4N45_26990 PF14850 DNA-binding domain of Proline dehydrogenase J4N45_26995 PF00232 Glycosyl hydrolase family 1 J4N45_27000 PF01202 Shikimate kinase J4N45_27005 PF00920 Dehydratase family J4N45_27010 PF00356 Bacterial regulatory proteins, lacI family J4N45_27010 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family J4N45_27015 PF00232 Glycosyl hydrolase family 1 J4N45_27020 PF02378 Phosphotransferase system, EIIC J4N45_27025 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N45_27030 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit J4N45_27055 PF00005 ABC transporter J4N45_27055 PF08402 TOBE domain J4N45_27075 PF01547 Bacterial extracellular solute-binding protein J4N45_27080 PF05036 Sporulation related domain J4N45_27080 PF03330 Lytic transglycolase J4N45_27085 PF00392 Bacterial regulatory proteins, gntR family J4N45_27085 PF07702 UTRA domain J4N45_27090 PF12833 Helix-turn-helix domain J4N45_27095 PF01243 Pyridoxamine 5'-phosphate oxidase J4N45_27095 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region J4N45_27100 PF00529 HlyD membrane-fusion protein of T1SS J4N45_27115 PF00664 ABC transporter transmembrane region J4N45_27115 PF00005 ABC transporter J4N45_27115 PF03412 Peptidase C39 family J4N45_27125 PF12833 Helix-turn-helix domain J4N45_27125 PF02311 AraC-like ligand binding domain J4N45_27130 PF01979 Amidohydrolase family J4N45_27130 PF13382 Adenine deaminase C-terminal domain J4N45_27135 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N45_27135 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J4N45_27150 PF03616 Sodium/glutamate symporter J4N45_27165 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J4N45_27165 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J4N45_27170 PF03466 LysR substrate binding domain J4N45_27170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N45_27180 PF00990 Diguanylate cyclase, GGDEF domain J4N45_27180 PF00563 EAL domain J4N45_27180 PF03707 Bacterial signalling protein N terminal repeat J4N45_27185 PF01709 Transcriptional regulator