locus-tag class description J4N44_00005 PF00308 Bacterial dnaA protein J4N44_00005 PF08299 Bacterial dnaA protein helix-turn-helix J4N44_00005 PF11638 DnaA N-terminal domain J4N44_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain J4N44_00010 PF02767 DNA polymerase III beta subunit, central domain J4N44_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain J4N44_00015 PF02463 RecF/RecN/SMC N terminal domain J4N44_00020 PF00204 DNA gyrase B J4N44_00020 PF00986 DNA gyrase B subunit, carboxyl terminus J4N44_00020 PF18053 DNA gyrase B subunit insert domain J4N44_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_00020 PF01751 Toprim domain J4N44_00025 PF00011 Hsp20/alpha crystallin family J4N44_00030 PF00155 Aminotransferase class I and II J4N44_00035 PF00128 Alpha amylase, catalytic domain J4N44_00040 PF05746 DALR anticodon binding domain J4N44_00040 PF02092 Glycyl-tRNA synthetase beta subunit J4N44_00045 PF02091 Glycyl-tRNA synthetase alpha subunit J4N44_00050 PF01169 Uncharacterized protein family UPF0016 J4N44_00060 PF01206 Sulfurtransferase TusA J4N44_00070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_00070 PF03466 LysR substrate binding domain J4N44_00075 PF08240 Alcohol dehydrogenase GroES-like domain J4N44_00075 PF00107 Zinc-binding dehydrogenase J4N44_00080 PF00108 Thiolase, N-terminal domain J4N44_00080 PF02803 Thiolase, C-terminal domain J4N44_00085 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J4N44_00085 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J4N44_00085 PF00378 Enoyl-CoA hydratase/isomerase J4N44_00090 PF09186 Domain of unknown function (DUF1949) J4N44_00090 PF01205 Uncharacterized protein family UPF0029 J4N44_00095 PF02386 Cation transport protein J4N44_00100 PF12724 Flavodoxin domain J4N44_00145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_00145 PF03466 LysR substrate binding domain J4N44_00150 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain J4N44_00150 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain J4N44_00155 PF04380 Membrane fusogenic activity J4N44_00160 PF00873 AcrB/AcrD/AcrF family J4N44_00165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N44_00170 PF08359 YsiA-like protein, C-terminal region J4N44_00170 PF00440 Bacterial regulatory proteins, tetR family J4N44_00175 PF00580 UvrD/REP helicase N-terminal domain J4N44_00175 PF13361 UvrD-like helicase C-terminal domain J4N44_00180 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J4N44_00210 PF13419 Haloacid dehalogenase-like hydrolase J4N44_00215 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N44_00215 PF00005 ABC transporter J4N44_00220 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N44_00225 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_00230 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_00230 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N44_00260 PF00069 Protein kinase domain J4N44_00265 PF00356 Bacterial regulatory proteins, lacI family J4N44_00265 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family J4N44_00270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_00270 PF03466 LysR substrate binding domain J4N44_00275 PF00893 Small Multidrug Resistance protein J4N44_00280 PF00893 Small Multidrug Resistance protein J4N44_00285 PF00920 Dehydratase family J4N44_00290 PF01202 Shikimate kinase J4N44_00295 PF02447 GntP family permease J4N44_00300 PF01081 KDPG and KHG aldolase J4N44_00305 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4N44_00305 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N44_00315 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ J4N44_00320 PF01432 Peptidase family M3 J4N44_00325 PF01037 Lrp/AsnC ligand binding domain J4N44_00330 PF08448 PAS fold J4N44_00330 PF00990 Diguanylate cyclase, GGDEF domain J4N44_00330 PF00563 EAL domain J4N44_00335 PF04445 Putative SAM-dependent methyltransferase J4N44_00345 PF00892 EamA-like transporter family J4N44_00350 PF00582 Universal stress protein family J4N44_00355 PF00210 Ferritin-like domain J4N44_00360 PF10625 Universal stress protein B (UspB) J4N44_00380 PF00563 EAL domain J4N44_00380 PF00990 Diguanylate cyclase, GGDEF domain J4N44_00380 PF03707 Bacterial signalling protein N terminal repeat J4N44_00390 PF02646 RmuC family J4N44_00395 PF01209 ubiE/COQ5 methyltransferase family J4N44_00400 PF02036 SCP-2 sterol transfer family J4N44_00405 PF03109 ABC1 family J4N44_00410 PF02416 mttA/Hcf106 family J4N44_00415 PF02416 mttA/Hcf106 family J4N44_00420 PF00902 Sec-independent protein translocase protein (TatC) J4N44_00425 PF01026 TatD related DNase J4N44_00430 PF00490 Delta-aminolevulinic acid dehydratase J4N44_00440 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J4N44_00440 PF00476 DNA polymerase family A J4N44_00440 PF01367 5'-3' exonuclease, C-terminal SAM fold J4N44_00440 PF01612 3'-5' exonuclease J4N44_00445 PF01926 50S ribosome-binding GTPase J4N44_00450 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J4N44_00460 PF04220 Der GTPase activator (YihI) J4N44_00470 PF04055 Radical SAM superfamily J4N44_00470 PF06969 HemN C-terminal domain J4N44_00475 PF00962 Adenosine/AMP deaminase J4N44_00480 PF00563 EAL domain J4N44_00480 PF00990 Diguanylate cyclase, GGDEF domain J4N44_00480 PF03707 Bacterial signalling protein N terminal repeat J4N44_00485 PF02954 Bacterial regulatory protein, Fis family J4N44_00485 PF00072 Response regulator receiver domain J4N44_00485 PF00158 Sigma-54 interaction domain J4N44_00490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_00490 PF00512 His Kinase A (phospho-acceptor) domain J4N44_00490 PF00989 PAS fold J4N44_00500 PF00120 Glutamine synthetase, catalytic domain J4N44_00500 PF03951 Glutamine synthetase, beta-Grasp domain J4N44_00505 PF03144 Elongation factor Tu domain 2 J4N44_00505 PF00679 Elongation factor G C-terminus J4N44_00505 PF00009 Elongation factor Tu GTP binding domain J4N44_00520 PF03631 Virulence factor BrkB J4N44_00525 PF02580 D-Tyr-tRNA(Tyr) deacylase J4N44_00530 PF09500 Putative thioesterase (yiiD_Cterm) J4N44_00530 PF00583 Acetyltransferase (GNAT) family J4N44_00540 PF01293 Phosphoenolpyruvate carboxykinase J4N44_00545 PF01430 Hsp33 protein J4N44_00550 PF01479 S4 domain J4N44_00555 PF11356 Type II secretion system protein C J4N44_00560 PF00263 Bacterial type II and III secretion system protein J4N44_00560 PF03958 Bacterial type II/III secretion system short domain J4N44_00565 PF00437 Type II/IV secretion system protein J4N44_00570 PF00482 Type II secretion system (T2SS), protein F J4N44_00575 PF07963 Prokaryotic N-terminal methylation motif J4N44_00575 PF08334 Type II secretion system (T2SS), protein G J4N44_00580 PF12019 Type II transport protein GspH J4N44_00585 PF07963 Prokaryotic N-terminal methylation motif J4N44_00585 PF02501 Type II secretion system (T2SS), protein I J4N44_00590 PF11612 Type II secretion system (T2SS), protein J J4N44_00590 PF07963 Prokaryotic N-terminal methylation motif J4N44_00595 PF03934 Type II secretion system (T2SS), protein K J4N44_00600 PF12693 GspL periplasmic domain J4N44_00600 PF05134 Type II secretion system (T2SS), protein L J4N44_00605 PF04612 Type II secretion system (T2SS), protein M J4N44_00610 PF01203 Type II secretion system (T2SS), protein N J4N44_00615 PF00459 Inositol monophosphatase family J4N44_00620 PF00293 NUDIX domain J4N44_00625 PF01521 Iron-sulphur cluster biosynthesis J4N44_00625 PF01106 NifU-like domain J4N44_00630 PF00156 Phosphoribosyl transferase domain J4N44_00635 PF00561 alpha/beta hydrolase fold J4N44_00645 PF00575 S1 RNA binding domain J4N44_00645 PF09371 Tex-like protein N-terminal domain J4N44_00645 PF16921 Tex protein YqgF-like domain J4N44_00645 PF17674 HHH domain J4N44_00655 PF01272 Transcription elongation factor, GreA/GreB, C-term J4N44_00655 PF03449 Transcription elongation factor, N-terminal J4N44_00660 PF00072 Response regulator receiver domain J4N44_00660 PF00486 Transcriptional regulatory protein, C terminal J4N44_00665 PF00672 HAMP domain J4N44_00665 PF00512 His Kinase A (phospho-acceptor) domain J4N44_00665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_00670 PF00860 Permease family J4N44_00675 PF00326 Prolyl oligopeptidase family J4N44_00680 PF00270 DEAD/DEAH box helicase J4N44_00680 PF00271 Helicase conserved C-terminal domain J4N44_00680 PF17191 RecG wedge domain J4N44_00685 PF12105 SpoU, rRNA methylase, C-terminal J4N44_00685 PF00588 SpoU rRNA Methylase family J4N44_00690 PF04607 Region found in RelA / SpoT proteins J4N44_00690 PF13291 ACT domain J4N44_00690 PF02824 TGS domain J4N44_00695 PF01192 RNA polymerase Rpb6 J4N44_00700 PF00625 Guanylate kinase J4N44_00715 PF02472 Biopolymer transport protein ExbD/TolR J4N44_00720 PF01618 MotA/TolQ/ExbB proton channel family J4N44_00735 PF07715 TonB-dependent Receptor Plug Domain J4N44_00735 PF00593 TonB dependent receptor J4N44_00740 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_00745 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_00745 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N44_00750 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N44_00755 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N44_00755 PF00005 ABC transporter J4N44_00760 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N44_00760 PF00005 ABC transporter J4N44_00775 PF00892 EamA-like transporter family J4N44_00785 PF00486 Transcriptional regulatory protein, C terminal J4N44_00785 PF00072 Response regulator receiver domain J4N44_00790 PF03755 YicC-like family, N-terminal region J4N44_00790 PF08340 Domain of unknown function (DUF1732) J4N44_00795 PF03725 3' exoribonuclease family, domain 2 J4N44_00795 PF01138 3' exoribonuclease family, domain 1 J4N44_00800 PF00156 Phosphoribosyl transferase domain J4N44_00805 PF03279 Bacterial lipid A biosynthesis acyltransferase J4N44_00810 PF00440 Bacterial regulatory proteins, tetR family J4N44_00815 PF02441 Flavoprotein J4N44_00815 PF04127 DNA / pantothenate metabolism flavoprotein J4N44_00820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N44_00820 PF00672 HAMP domain J4N44_00820 PF02743 Cache domain J4N44_00825 PF04002 RadC-like JAB domain J4N44_00830 PF00830 Ribosomal L28 family J4N44_00835 PF00471 Ribosomal protein L33 J4N44_00840 PF00884 Sulfatase J4N44_00850 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain J4N44_00850 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain J4N44_00850 PF06827 Zinc finger found in FPG and IleRS J4N44_00855 PF01467 Cytidylyltransferase-like J4N44_00860 PF05686 Glycosyl transferase family 90 J4N44_00865 PF00535 Glycosyl transferase family 2 J4N44_00870 PF00535 Glycosyl transferase family 2 J4N44_00875 PF01075 Glycosyltransferase family 9 (heptosyltransferase) J4N44_00880 PF01219 Prokaryotic diacylglycerol kinase J4N44_00890 PF16363 GDP-mannose 4,6 dehydratase J4N44_00895 PF00483 Nucleotidyl transferase J4N44_00905 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J4N44_00905 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J4N44_00930 PF00501 AMP-binding enzyme J4N44_00930 PF13193 AMP-binding enzyme C-terminal domain J4N44_00935 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J4N44_00945 PF02719 Polysaccharide biosynthesis protein J4N44_00950 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J4N44_00955 PF02350 UDP-N-acetylglucosamine 2-epimerase J4N44_00960 PF08666 SAF domain J4N44_00960 PF03102 NeuB family J4N44_00970 PF00483 Nucleotidyl transferase J4N44_00975 PF13472 GDSL-like Lipase/Acylhydrolase family J4N44_00975 PF02348 Cytidylyltransferase J4N44_00985 PF00202 Aminotransferase class-III J4N44_00990 PF00795 Carbon-nitrogen hydrolase J4N44_01010 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) J4N44_01015 PF01075 Glycosyltransferase family 9 (heptosyltransferase) J4N44_01020 PF03279 Bacterial lipid A biosynthesis acyltransferase J4N44_01025 PF01370 NAD dependent epimerase/dehydratase family J4N44_01030 PF06082 Exopolysaccharide biosynthesis protein YbjH J4N44_01090 PF00535 Glycosyl transferase family 2 J4N44_01100 PF13439 Glycosyltransferase Family 4 J4N44_01100 PF00534 Glycosyl transferases group 1 J4N44_01105 PF13439 Glycosyltransferase Family 4 J4N44_01105 PF00534 Glycosyl transferases group 1 J4N44_01110 PF16363 GDP-mannose 4,6 dehydratase J4N44_01115 PF01370 NAD dependent epimerase/dehydratase family J4N44_01120 PF00293 NUDIX domain J4N44_01125 PF00483 Nucleotidyl transferase J4N44_01125 PF01050 Mannose-6-phosphate isomerase J4N44_01130 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J4N44_01130 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J4N44_01130 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J4N44_01130 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J4N44_01135 PF01238 Phosphomannose isomerase type I J4N44_01140 PF00535 Glycosyl transferase family 2 J4N44_01145 PF01370 NAD dependent epimerase/dehydratase family J4N44_01150 PF02397 Bacterial sugar transferase J4N44_01155 PF02719 Polysaccharide biosynthesis protein J4N44_01160 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J4N44_01160 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J4N44_01160 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J4N44_01165 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain J4N44_01165 PF00753 Metallo-beta-lactamase superfamily J4N44_01165 PF10996 Beta-Casp domain J4N44_01170 PF00121 Triosephosphate isomerase J4N44_01195 PF08220 DeoR-like helix-turn-helix domain J4N44_01195 PF00455 DeoR C terminal sensor domain J4N44_01200 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded J4N44_01205 PF06005 Cell division protein ZapB J4N44_01210 PF03737 Aldolase/RraA J4N44_01215 PF01040 UbiA prenyltransferase family J4N44_01220 PF07724 AAA domain (Cdc48 subfamily) J4N44_01220 PF00004 ATPase family associated with various cellular activities (AAA) J4N44_01225 PF00227 Proteasome subunit J4N44_01235 PF00356 Bacterial regulatory proteins, lacI family J4N44_01240 PF00270 DEAD/DEAH box helicase J4N44_01240 PF00271 Helicase conserved C-terminal domain J4N44_01240 PF17764 3′ DNA-binding domain (3′BD) J4N44_01240 PF18074 Primosomal protein N C-terminal domain J4N44_01240 PF18319 PriA DNA helicase Cys-rich region (CRR) domain J4N44_01245 PF01197 Ribosomal protein L31 J4N44_01250 PF00338 Ribosomal protein S10p/S20e J4N44_01255 PF00297 Ribosomal protein L3 J4N44_01260 PF00573 Ribosomal protein L4/L1 family J4N44_01265 PF00276 Ribosomal protein L23 J4N44_01270 PF00181 Ribosomal Proteins L2, RNA binding domain J4N44_01270 PF03947 Ribosomal Proteins L2, C-terminal domain J4N44_01275 PF00203 Ribosomal protein S19 J4N44_01280 PF00237 Ribosomal protein L22p/L17e J4N44_01285 PF00189 Ribosomal protein S3, C-terminal domain J4N44_01285 PF07650 KH domain J4N44_01290 PF00252 Ribosomal protein L16p/L10e J4N44_01295 PF00831 Ribosomal L29 protein J4N44_01300 PF00366 Ribosomal protein S17 J4N44_01305 PF00238 Ribosomal protein L14p/L23e J4N44_01310 PF00467 KOW motif J4N44_01310 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 J4N44_01315 PF00281 Ribosomal protein L5 J4N44_01315 PF00673 ribosomal L5P family C-terminus J4N44_01320 PF00253 Ribosomal protein S14p/S29e J4N44_01325 PF00410 Ribosomal protein S8 J4N44_01330 PF00347 Ribosomal protein L6 J4N44_01335 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast J4N44_01340 PF00333 Ribosomal protein S5, N-terminal domain J4N44_01340 PF03719 Ribosomal protein S5, C-terminal domain J4N44_01345 PF00327 Ribosomal protein L30p/L7e J4N44_01350 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A J4N44_01355 PF00344 SecY translocase J4N44_01360 PF00444 Ribosomal protein L36 J4N44_01365 PF00416 Ribosomal protein S13/S18 J4N44_01370 PF00411 Ribosomal protein S11 J4N44_01375 PF01479 S4 domain J4N44_01375 PF00163 Ribosomal protein S4/S9 N-terminal domain J4N44_01380 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain J4N44_01380 PF01000 RNA polymerase Rpb3/RpoA insert domain J4N44_01380 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain J4N44_01385 PF01196 Ribosomal protein L17 J4N44_01395 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N44_01395 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J4N44_01410 PF13673 Acetyltransferase (GNAT) domain J4N44_01415 PF03880 DbpA RNA binding domain J4N44_01415 PF00270 DEAD/DEAH box helicase J4N44_01415 PF00271 Helicase conserved C-terminal domain J4N44_01425 PF02872 5'-nucleotidase, C-terminal domain J4N44_01425 PF00149 Calcineurin-like phosphoesterase J4N44_01430 PF14824 Sirohaem biosynthesis protein central J4N44_01430 PF10414 Sirohaem synthase dimerisation region J4N44_01430 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N44_01435 PF01507 Phosphoadenosine phosphosulfate reductase family J4N44_01440 PF00009 Elongation factor Tu GTP binding domain J4N44_01445 PF02080 TrkA-C domain J4N44_01445 PF03600 Citrate transporter J4N44_01470 PF00005 ABC transporter J4N44_01480 PF10795 Protein of unknown function (DUF2607) J4N44_01485 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) J4N44_01495 PF01625 Peptide methionine sulfoxide reductase J4N44_01500 PF17243 POTRA domain TamA domain 1 J4N44_01500 PF07244 Surface antigen variable number repeat J4N44_01500 PF01103 Surface antigen J4N44_01505 PF04357 TamB, inner membrane protein subunit of TAM complex J4N44_01510 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like J4N44_01520 PF00719 Inorganic pyrophosphatase J4N44_01525 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain J4N44_01530 PF08245 Mur ligase middle domain J4N44_01530 PF01225 Mur ligase family, catalytic domain J4N44_01530 PF02875 Mur ligase family, glutamate ligase domain J4N44_01535 PF02441 Flavoprotein J4N44_01545 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_01550 PF00005 ABC transporter J4N44_01570 PF01316 Arginine repressor, DNA binding domain J4N44_01570 PF02863 Arginine repressor, C-terminal domain J4N44_01575 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain J4N44_01575 PF00056 lactate/malate dehydrogenase, NAD binding domain J4N44_01585 PF00348 Polyprenyl synthetase J4N44_01590 PF00829 Ribosomal prokaryotic L21 protein J4N44_01595 PF01016 Ribosomal L27 protein J4N44_01600 PF01018 GTP1/OBG J4N44_01600 PF01926 50S ribosome-binding GTPase J4N44_01605 PF06738 Putative threonine/serine exporter J4N44_01610 PF12821 Threonine/Serine exporter, ThrE J4N44_01615 PF00186 Dihydrofolate reductase J4N44_01620 PF00149 Calcineurin-like phosphoesterase J4N44_01625 PF04379 ApaG domain J4N44_01630 PF00398 Ribosomal RNA adenine dimethylase J4N44_01635 PF04166 Pyridoxal phosphate biosynthetic protein PdxA J4N44_01640 PF09312 SurA N-terminal domain J4N44_01645 PF04453 LPS transport system D J4N44_01645 PF03968 OstA-like protein J4N44_01650 PF05099 Tellurite resistance protein TerB J4N44_01650 PF00226 DnaJ domain J4N44_01660 PF00694 Aconitase C-terminal domain J4N44_01665 PF00330 Aconitase family (aconitate hydratase) J4N44_01670 PF00180 Isocitrate/isopropylmalate dehydrogenase J4N44_01675 PF08502 LeuA allosteric (dimerisation) domain J4N44_01675 PF00682 HMGL-like J4N44_01685 PF01569 PAP2 superfamily J4N44_01695 PF03466 LysR substrate binding domain J4N44_01695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_01700 PF00501 AMP-binding enzyme J4N44_01705 PF00205 Thiamine pyrophosphate enzyme, central domain J4N44_01705 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J4N44_01705 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J4N44_01710 PF10369 Small subunit of acetolactate synthase J4N44_01715 PF00990 Diguanylate cyclase, GGDEF domain J4N44_01715 PF17158 Membrane-associated sensor, integral membrane domain J4N44_01725 PF00224 Pyruvate kinase, barrel domain J4N44_01725 PF02887 Pyruvate kinase, alpha/beta domain J4N44_01730 PF08220 DeoR-like helix-turn-helix domain J4N44_01730 PF00455 DeoR C terminal sensor domain J4N44_01735 PF01380 SIS domain J4N44_01750 PF00072 Response regulator receiver domain J4N44_01750 PF00486 Transcriptional regulatory protein, C terminal J4N44_01755 PF00672 HAMP domain J4N44_01755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_01755 PF00512 His Kinase A (phospho-acceptor) domain J4N44_01760 PF13419 Haloacid dehalogenase-like hydrolase J4N44_01765 PF05068 Mannitol repressor J4N44_01770 PF08125 Mannitol dehydrogenase C-terminal domain J4N44_01770 PF01232 Mannitol dehydrogenase Rossmann domain J4N44_01775 PF02378 Phosphotransferase system, EIIC J4N44_01775 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N44_01775 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N44_01855 PF02899 Phage integrase, N-terminal SAM-like domain J4N44_01855 PF00589 Phage integrase family J4N44_01875 PF04539 Sigma-70 region 3 J4N44_01875 PF04545 Sigma-70, region 4 J4N44_01875 PF00140 Sigma-70 factor, region 1.2 J4N44_01875 PF03979 Sigma-70 factor, region 1.1 J4N44_01875 PF04546 Sigma-70, non-essential region J4N44_01875 PF04542 Sigma-70 region 2 J4N44_01880 PF10410 DnaB-helicase binding domain of primase J4N44_01880 PF08278 DNA primase DnaG DnaB-binding J4N44_01880 PF08275 DNA primase catalytic core, N-terminal domain J4N44_01880 PF01807 CHC2 zinc finger J4N44_01885 PF09424 Yqey-like protein J4N44_01890 PF01165 Ribosomal protein S21 J4N44_01895 PF00814 Glycoprotease family J4N44_01900 PF00561 alpha/beta hydrolase fold J4N44_01905 PF02660 Glycerol-3-phosphate acyltransferase J4N44_01910 PF02152 Dihydroneopterin aldolase J4N44_01915 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J4N44_01920 PF02673 Bacitracin resistance protein BacA J4N44_01925 PF01966 HD domain J4N44_01925 PF01743 Poly A polymerase head domain J4N44_01925 PF12627 Probable RNA and SrmB- binding site of polymerase A J4N44_01930 PF01471 Putative peptidoglycan binding domain J4N44_01930 PF13401 AAA domain J4N44_01940 PF08239 Bacterial SH3 domain J4N44_01945 PF01384 Phosphate transporter family J4N44_01950 PF01865 Protein of unknown function DUF47 J4N44_01955 PF01928 CYTH domain J4N44_01960 PF07885 Ion channel J4N44_01965 PF02743 Cache domain J4N44_01965 PF00672 HAMP domain J4N44_01965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N44_01970 PF08335 GlnD PII-uridylyltransferase J4N44_01970 PF03710 Glutamate-ammonia ligase adenylyltransferase J4N44_01975 PF01467 Cytidylyltransferase-like J4N44_01975 PF00294 pfkB family carbohydrate kinase J4N44_01980 PF02321 Outer membrane efflux protein J4N44_01985 PF00293 NUDIX domain J4N44_01990 PF06853 Protein of unknown function (DUF1249) J4N44_01995 PF00149 Calcineurin-like phosphoesterase J4N44_02000 PF05728 Uncharacterised protein family (UPF0227) J4N44_02005 PF00204 DNA gyrase B J4N44_02005 PF00986 DNA gyrase B subunit, carboxyl terminus J4N44_02005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_02005 PF01751 Toprim domain J4N44_02010 PF00521 DNA gyrase/topoisomerase IV, subunit A J4N44_02010 PF03989 DNA gyrase C-terminal domain, beta-propeller J4N44_02015 PF13180 PDZ domain J4N44_02020 PF00595 PDZ domain J4N44_02025 PF06295 Protein of unknown function (DUF1043) J4N44_02030 PF03969 AFG1-like ATPase J4N44_02035 PF00572 Ribosomal protein L13 J4N44_02040 PF00380 Ribosomal protein S9/S16 J4N44_02045 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal J4N44_02045 PF00355 Rieske [2Fe-2S] domain J4N44_02050 PF00032 Cytochrome b(C-terminal)/b6/petD J4N44_02050 PF00033 Cytochrome b/b6/petB J4N44_02055 PF02167 Cytochrome C1 family J4N44_02060 PF00043 Glutathione S-transferase, C-terminal domain J4N44_02060 PF02798 Glutathione S-transferase, N-terminal domain J4N44_02065 PF04386 Stringent starvation protein B J4N44_02070 PF04972 BON domain J4N44_02075 PF13580 SIS domain J4N44_02080 PF02021 Uncharacterised protein family UPF0102 J4N44_02085 PF04348 LppC putative lipoprotein J4N44_02090 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N44_02100 PF01795 MraW methylase family J4N44_02105 PF04999 Cell division protein FtsL J4N44_02110 PF03717 Penicillin-binding Protein dimerisation domain J4N44_02110 PF00905 Penicillin binding protein transpeptidase domain J4N44_02115 PF01225 Mur ligase family, catalytic domain J4N44_02115 PF02875 Mur ligase family, glutamate ligase domain J4N44_02115 PF08245 Mur ligase middle domain J4N44_02120 PF08245 Mur ligase middle domain J4N44_02120 PF01225 Mur ligase family, catalytic domain J4N44_02120 PF02875 Mur ligase family, glutamate ligase domain J4N44_02125 PF00953 Glycosyl transferase family 4 J4N44_02125 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 J4N44_02130 PF08245 Mur ligase middle domain J4N44_02130 PF02875 Mur ligase family, glutamate ligase domain J4N44_02135 PF01098 Cell cycle protein J4N44_02140 PF04101 Glycosyltransferase family 28 C-terminal domain J4N44_02140 PF03033 Glycosyltransferase family 28 N-terminal domain J4N44_02145 PF01225 Mur ligase family, catalytic domain J4N44_02145 PF02875 Mur ligase family, glutamate ligase domain J4N44_02145 PF08245 Mur ligase middle domain J4N44_02150 PF03799 Cell division protein FtsQ J4N44_02150 PF08478 POTRA domain, FtsQ-type J4N44_02155 PF02491 SHS2 domain inserted in FTSA J4N44_02160 PF12327 FtsZ family, C-terminal domain J4N44_02160 PF00091 Tubulin/FtsZ family, GTPase domain J4N44_02165 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase J4N44_02170 PF02810 SEC-C motif J4N44_02170 PF01043 SecA preprotein cross-linking domain J4N44_02170 PF07517 SecA DEAD-like domain J4N44_02170 PF07516 SecA Wing and Scaffold domain J4N44_02175 PF00293 NUDIX domain J4N44_02180 PF05173 Dihydrodipicolinate reductase, C-terminus J4N44_02180 PF01113 Dihydrodipicolinate reductase, N-terminus J4N44_02185 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain J4N44_02185 PF00117 Glutamine amidotransferase class-I J4N44_02190 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J4N44_02190 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain J4N44_02190 PF02142 MGS-like domain J4N44_02205 PF01925 Sulfite exporter TauE/SafE J4N44_02210 PF03466 LysR substrate binding domain J4N44_02210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_02215 PF03458 UPF0126 domain J4N44_02220 PF01497 Periplasmic binding protein J4N44_02230 PF01048 Phosphorylase superfamily J4N44_02240 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster J4N44_02240 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N44_02245 PF00310 Glutamine amidotransferases class-II J4N44_02245 PF04898 Glutamate synthase central domain J4N44_02245 PF01645 Conserved region in glutamate synthase J4N44_02245 PF01493 GXGXG motif J4N44_02250 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster J4N44_02250 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N44_02255 PF01493 GXGXG motif J4N44_02255 PF00310 Glutamine amidotransferases class-II J4N44_02255 PF01645 Conserved region in glutamate synthase J4N44_02255 PF04898 Glutamate synthase central domain J4N44_02260 PF04055 Radical SAM superfamily J4N44_02260 PF16199 Radical_SAM C-terminal domain J4N44_02265 PF00563 EAL domain J4N44_02265 PF00990 Diguanylate cyclase, GGDEF domain J4N44_02265 PF00360 Phytochrome region J4N44_02265 PF01590 GAF domain J4N44_02275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_02275 PF00512 His Kinase A (phospho-acceptor) domain J4N44_02275 PF18415 Histidine kinase receptor ArcB trans-membrane domain J4N44_02275 PF01627 Hpt domain J4N44_02275 PF00989 PAS fold J4N44_02275 PF00072 Response regulator receiver domain J4N44_02285 PF00072 Response regulator receiver domain J4N44_02285 PF00486 Transcriptional regulatory protein, C terminal J4N44_02295 PF03737 Aldolase/RraA J4N44_02305 PF03447 Homoserine dehydrogenase, NAD binding domain J4N44_02305 PF01842 ACT domain J4N44_02305 PF13840 ACT domain J4N44_02305 PF00696 Amino acid kinase family J4N44_02305 PF00742 Homoserine dehydrogenase J4N44_02310 PF08544 GHMP kinases C terminal J4N44_02310 PF00288 GHMP kinases N terminal domain J4N44_02315 PF00291 Pyridoxal-phosphate dependent enzyme J4N44_02315 PF14821 Threonine synthase N terminus J4N44_02320 PF03358 NADPH-dependent FMN reductase J4N44_02325 PF01228 Glycine radical J4N44_02330 PF01261 Xylose isomerase-like TIM barrel J4N44_02335 PF03167 Uracil DNA glycosylase superfamily J4N44_02350 PF01235 Sodium:alanine symporter family J4N44_02355 PF03883 Peroxide stress protein YaaA J4N44_02365 PF00271 Helicase conserved C-terminal domain J4N44_02365 PF00270 DEAD/DEAH box helicase J4N44_02370 PF05175 Methyltransferase small domain J4N44_02375 PF05525 Branched-chain amino acid transport protein J4N44_02380 PF00258 Flavodoxin J4N44_02385 PF02899 Phage integrase, N-terminal SAM-like domain J4N44_02385 PF00589 Phage integrase family J4N44_02390 PF10411 Disulfide bond isomerase protein N-terminus J4N44_02390 PF13098 Thioredoxin-like domain J4N44_02395 PF01368 DHH family J4N44_02395 PF02272 DHHA1 domain J4N44_02395 PF17768 RecJ OB domain J4N44_02405 PF01336 OB-fold nucleic acid binding domain J4N44_02405 PF00152 tRNA synthetases class II (D, K and N) J4N44_02410 PF00072 Response regulator receiver domain J4N44_02410 PF02954 Bacterial regulatory protein, Fis family J4N44_02410 PF00158 Sigma-54 interaction domain J4N44_02420 PF00248 Aldo/keto reductase family J4N44_02430 PF02976 DNA mismatch repair enzyme MutH J4N44_02435 PF00293 NUDIX domain J4N44_02440 PF02896 PEP-utilising enzyme, TIM barrel domain J4N44_02440 PF00391 PEP-utilising enzyme, mobile domain J4N44_02440 PF05524 PEP-utilising enzyme, N-terminal J4N44_02440 PF01590 GAF domain J4N44_02445 PF01925 Sulfite exporter TauE/SafE J4N44_02450 PF01790 Prolipoprotein diacylglyceryl transferase J4N44_02455 PF00303 Thymidylate synthase J4N44_02460 PF02690 Na+/Pi-cotransporter J4N44_02465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_02465 PF03466 LysR substrate binding domain J4N44_02470 PF01022 Bacterial regulatory protein, arsR family J4N44_02475 PF01649 Ribosomal protein S20 J4N44_02480 PF03023 Lipid II flippase MurJ J4N44_02485 PF06574 FAD synthetase J4N44_02485 PF01687 Riboflavin kinase J4N44_02490 PF06827 Zinc finger found in FPG and IleRS J4N44_02490 PF08264 Anticodon-binding domain of tRNA J4N44_02490 PF00133 tRNA synthetases class I (I, L, M and V) J4N44_02495 PF01252 Signal peptidase (SPase) II J4N44_02500 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N44_02505 PF02401 LytB protein J4N44_02510 PF04397 LytTr DNA-binding domain J4N44_02510 PF00072 Response regulator receiver domain J4N44_02515 PF07694 5TMR of 5TMR-LYT J4N44_02515 PF06580 Histidine kinase J4N44_02520 PF02554 Carbon starvation protein CstA J4N44_02535 PF01380 SIS domain J4N44_02540 PF03702 Anhydro-N-acetylmuramic acid kinase J4N44_02545 PF00933 Glycosyl hydrolase family 3 N terminal domain J4N44_02550 PF00793 DAHP synthetase I family J4N44_02555 PF02153 Prephenate dehydrogenase J4N44_02555 PF01817 Chorismate mutase type II J4N44_02560 PF01551 Peptidase family M23 J4N44_02560 PF04225 Opacity-associated protein A LysM-like domain J4N44_02565 PF07238 PilZ domain J4N44_02570 PF12848 ABC transporter J4N44_02570 PF00005 ABC transporter J4N44_02575 PF01464 Transglycosylase SLT domain J4N44_02575 PF14718 Soluble lytic murein transglycosylase L domain J4N44_02580 PF01371 Trp repressor protein J4N44_02585 PF01931 Protein of unknown function DUF84 J4N44_02590 PF00800 Prephenate dehydratase J4N44_02590 PF01817 Chorismate mutase type II J4N44_02595 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein J4N44_02600 PF01464 Transglycosylase SLT domain J4N44_02605 PF13525 Outer membrane lipoprotein J4N44_02610 PF01479 S4 domain J4N44_02610 PF00849 RNA pseudouridylate synthase J4N44_02615 PF02578 Multi-copper polyphenol oxidoreductase laccase J4N44_02620 PF10431 C-terminal, D2-small domain, of ClpB protein J4N44_02620 PF02861 Clp amino terminal domain, pathogenicity island component J4N44_02620 PF17871 AAA lid domain J4N44_02620 PF07724 AAA domain (Cdc48 subfamily) J4N44_02620 PF00004 ATPase family associated with various cellular activities (AAA) J4N44_02665 PF03411 Penicillin-insensitive murein endopeptidase J4N44_02675 PF00037 4Fe-4S binding domain J4N44_02680 PF16325 Peptidase family U32 C-terminal domain J4N44_02680 PF01136 Peptidase family U32 J4N44_02685 PF04381 Putative exonuclease, RdgC J4N44_02690 PF00486 Transcriptional regulatory protein, C terminal J4N44_02690 PF00072 Response regulator receiver domain J4N44_02695 PF11808 Phosphate regulon sensor protein PhoR J4N44_02695 PF00989 PAS fold J4N44_02695 PF00512 His Kinase A (phospho-acceptor) domain J4N44_02695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_02700 PF12849 PBP superfamily domain J4N44_02705 PF02541 Ppx/GppA phosphatase family J4N44_02710 PF02503 Polyphosphate kinase middle domain J4N44_02710 PF13090 Polyphosphate kinase C-terminal domain 2 J4N44_02710 PF13089 Polyphosphate kinase N-terminal domain J4N44_02710 PF17941 Polyphosphate kinase C-terminal domain 1 J4N44_02715 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_02720 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_02725 PF00005 ABC transporter J4N44_02730 PF01895 PhoU domain J4N44_02745 PF03466 LysR substrate binding domain J4N44_02745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_02750 PF03976 Polyphosphate kinase 2 (PPK2) J4N44_02755 PF03932 CutC family J4N44_02760 PF10417 C-terminal domain of 1-Cys peroxiredoxin J4N44_02760 PF00578 AhpC/TSA family J4N44_02765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_02765 PF03466 LysR substrate binding domain J4N44_02770 PF01274 Malate synthase J4N44_02775 PF00463 Isocitrate lyase family J4N44_02780 PF00571 CBS domain J4N44_02795 PF02547 Queuosine biosynthesis protein J4N44_02800 PF01702 Queuine tRNA-ribosyltransferase J4N44_02805 PF02699 Preprotein translocase subunit J4N44_02810 PF02355 Protein export membrane protein J4N44_02810 PF07549 SecD/SecF GG Motif J4N44_02810 PF13721 SecD export protein N-terminal TM region J4N44_02815 PF07549 SecD/SecF GG Motif J4N44_02815 PF02355 Protein export membrane protein J4N44_02825 PF00459 Inositol monophosphatase family J4N44_02830 PF00588 SpoU rRNA Methylase family J4N44_02835 PF02082 Transcriptional regulator J4N44_02840 PF00266 Aminotransferase class-V J4N44_02845 PF01592 NifU-like N terminal domain J4N44_02850 PF01521 Iron-sulphur cluster biosynthesis J4N44_02855 PF07743 HSCB C-terminal oligomerisation domain J4N44_02855 PF00226 DnaJ domain J4N44_02860 PF00012 Hsp70 protein J4N44_02865 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N44_02870 PF04384 Iron-sulphur cluster assembly J4N44_02875 PF12404 Peptidase J4N44_02875 PF00883 Cytosol aminopeptidase family, catalytic domain J4N44_02880 PF00334 Nucleoside diphosphate kinase J4N44_02885 PF04055 Radical SAM superfamily J4N44_02890 PF13464 Domain of unknown function (DUF4115) J4N44_02895 PF04551 GcpE protein J4N44_02900 PF03129 Anticodon binding domain J4N44_02900 PF13393 Histidyl-tRNA synthetase J4N44_02905 PF09976 Tetratricopeptide repeat-like domain J4N44_02910 PF13360 PQQ-like domain J4N44_02915 PF01926 50S ribosome-binding GTPase J4N44_02915 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal J4N44_02925 PF13185 GAF domain J4N44_02925 PF00990 Diguanylate cyclase, GGDEF domain J4N44_02935 PF13742 OB-fold nucleic acid binding domain J4N44_02935 PF02601 Exonuclease VII, large subunit J4N44_02940 PF00478 IMP dehydrogenase / GMP reductase domain J4N44_02940 PF00571 CBS domain J4N44_02945 PF00117 Glutamine amidotransferase class-I J4N44_02945 PF00958 GMP synthase C terminal domain J4N44_02945 PF02540 NAD synthase J4N44_02950 PF03553 Na+/H+ antiporter family J4N44_02955 PF06483 Chitinase C J4N44_02955 PF00704 Glycosyl hydrolases family 18 J4N44_02960 PF01184 GPR1/FUN34/yaaH family J4N44_02965 PF01235 Sodium:alanine symporter family J4N44_02970 PF01266 FAD dependent oxidoreductase J4N44_02975 PF03466 LysR substrate binding domain J4N44_02975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_02980 PF00924 Mechanosensitive ion channel J4N44_02985 PF01053 Cys/Met metabolism PLP-dependent enzyme J4N44_02990 PF01521 Iron-sulphur cluster biosynthesis J4N44_02995 PF01458 Uncharacterized protein family (UPF0051) J4N44_03000 PF00005 ABC transporter J4N44_03005 PF01458 Uncharacterized protein family (UPF0051) J4N44_03010 PF00266 Aminotransferase class-V J4N44_03015 PF02657 Fe-S metabolism associated domain J4N44_03025 PF00202 Aminotransferase class-III J4N44_03045 PF12805 FUSC-like inner membrane protein yccS J4N44_03050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_03050 PF03466 LysR substrate binding domain J4N44_03060 PF01668 SmpB protein J4N44_03065 PF03364 Polyketide cyclase / dehydrase and lipid transport J4N44_03070 PF03658 RnfH family Ubiquitin J4N44_03075 PF04355 SmpA / OmlA family J4N44_03080 PF02463 RecF/RecN/SMC N terminal domain J4N44_03090 PF01513 ATP-NAD kinase J4N44_03095 PF01025 GrpE J4N44_03100 PF00375 Sodium:dicarboxylate symporter family J4N44_03105 PF00012 Hsp70 protein J4N44_03110 PF01556 DnaJ C terminal domain J4N44_03110 PF00226 DnaJ domain J4N44_03110 PF00684 DnaJ central domain J4N44_03115 PF07963 Prokaryotic N-terminal methylation motif J4N44_03115 PF00114 Pilin (bacterial filament) J4N44_03120 PF07963 Prokaryotic N-terminal methylation motif J4N44_03120 PF00114 Pilin (bacterial filament) J4N44_03140 PF03806 AbgT putative transporter family J4N44_03145 PF14437 MafB19-like deaminase J4N44_03150 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N44_03150 PF01464 Transglycosylase SLT domain J4N44_03155 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal J4N44_03155 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain J4N44_03155 PF02769 AIR synthase related protein, C-terminal domain J4N44_03170 PF07715 TonB-dependent Receptor Plug Domain J4N44_03170 PF00593 TonB dependent receptor J4N44_03185 PF01546 Peptidase family M20/M25/M40 J4N44_03185 PF07687 Peptidase dimerisation domain J4N44_03190 PF00860 Permease family J4N44_03195 PF00156 Phosphoribosyl transferase domain J4N44_03200 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) J4N44_03205 PF07417 Sigma factor-binding transcriptional regulator Crl J4N44_03210 PF00696 Amino acid kinase family J4N44_03210 PF01472 PUA domain J4N44_03215 PF00171 Aldehyde dehydrogenase family J4N44_03220 PF03477 ATP cone domain J4N44_03225 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J4N44_03225 PF01872 RibD C-terminal domain J4N44_03230 PF00677 Lumazine binding domain J4N44_03235 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase J4N44_03235 PF00925 GTP cyclohydrolase II J4N44_03240 PF00885 6,7-dimethyl-8-ribityllumazine synthase J4N44_03245 PF01029 NusB family J4N44_03250 PF00586 AIR synthase related protein, N-terminal domain J4N44_03250 PF02769 AIR synthase related protein, C-terminal domain J4N44_03255 PF04608 Phosphatidylglycerophosphatase A J4N44_03260 PF13292 1-deoxy-D-xylulose-5-phosphate synthase J4N44_03260 PF02779 Transketolase, pyrimidine binding domain J4N44_03260 PF02780 Transketolase, C-terminal domain J4N44_03265 PF00348 Polyprenyl synthetase J4N44_03270 PF02609 Exonuclease VII small subunit J4N44_03275 PF01618 MotA/TolQ/ExbB proton channel family J4N44_03280 PF13677 Membrane MotB of proton-channel complex MotA/MotB J4N44_03280 PF00691 OmpA family J4N44_03280 PF13677 Membrane MotB of proton-channel complex MotA/MotB J4N44_03280 PF00691 OmpA family J4N44_03285 PF02568 Thiamine biosynthesis protein (ThiI) J4N44_03285 PF02926 THUMP domain J4N44_03290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_03290 PF03466 LysR substrate binding domain J4N44_03300 PF04241 Protein of unknown function (DUF423) J4N44_03305 PF18125 RlmM ferredoxin-like domain J4N44_03305 PF01728 FtsJ-like methyltransferase J4N44_03310 PF01223 DNA/RNA non-specific endonuclease J4N44_03315 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J4N44_03315 PF01367 5'-3' exonuclease, C-terminal SAM fold J4N44_03320 PF03641 Possible lysine decarboxylase J4N44_03320 PF11892 Domain of unknown function (DUF3412) J4N44_03320 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases J4N44_03325 PF00990 Diguanylate cyclase, GGDEF domain J4N44_03335 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term J4N44_03335 PF14489 QueF-like protein J4N44_03340 PF07348 Syd protein (SUKH-2) J4N44_03345 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) J4N44_03350 PF00149 Calcineurin-like phosphoesterase J4N44_03350 PF02872 5'-nucleotidase, C-terminal domain J4N44_03360 PF03180 NLPA lipoprotein J4N44_03365 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_03370 PF00005 ABC transporter J4N44_03370 PF09383 NIL domain J4N44_03380 PF00356 Bacterial regulatory proteins, lacI family J4N44_03385 PF02378 Phosphotransferase system, EIIC J4N44_03385 PF00367 phosphotransferase system, EIIB J4N44_03390 PF16657 Maltogenic Amylase, C-terminal domain J4N44_03390 PF00128 Alpha amylase, catalytic domain J4N44_03405 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) J4N44_03405 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 J4N44_03410 PF00464 Serine hydroxymethyltransferase J4N44_03415 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family J4N44_03415 PF04055 Radical SAM superfamily J4N44_03420 PF03099 Biotin/lipoate A/B protein ligase family J4N44_03425 PF04359 Protein of unknown function (DUF493) J4N44_03430 PF07943 Penicillin-binding protein 5, C-terminal domain J4N44_03430 PF00768 D-alanyl-D-alanine carboxypeptidase J4N44_03435 PF03330 Lytic transglycolase J4N44_03435 PF05036 Sporulation related domain J4N44_03440 PF01098 Cell cycle protein J4N44_03445 PF00905 Penicillin binding protein transpeptidase domain J4N44_03445 PF03717 Penicillin-binding Protein dimerisation domain J4N44_03450 PF02590 Predicted SPOUT methyltransferase J4N44_03460 PF14840 Processivity clamp loader gamma complex DNA pol III C-term J4N44_03460 PF06144 DNA polymerase III, delta subunit J4N44_03465 PF04390 Lipopolysaccharide-assembly J4N44_03470 PF00133 tRNA synthetases class I (I, L, M and V) J4N44_03470 PF08264 Anticodon-binding domain of tRNA J4N44_03470 PF13603 Leucyl-tRNA synthetase, Domain 2 J4N44_03475 PF07295 Zinc-ribbon containing domain J4N44_03480 PF00795 Carbon-nitrogen hydrolase J4N44_03485 PF00571 CBS domain J4N44_03485 PF03471 Transporter associated domain J4N44_03490 PF02130 Uncharacterized protein family UPF0054 J4N44_03495 PF02562 PhoH-like protein J4N44_03500 PF04055 Radical SAM superfamily J4N44_03500 PF01938 TRAM domain J4N44_03500 PF00919 Uncharacterized protein family UPF0004 J4N44_03505 PF01494 FAD binding domain J4N44_03615 PF01926 50S ribosome-binding GTPase J4N44_03615 PF06071 Protein of unknown function (DUF933) J4N44_03620 PF01195 Peptidyl-tRNA hydrolase J4N44_03625 PF14572 Phosphoribosyl synthetase-associated domain J4N44_03625 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase J4N44_03630 PF08544 GHMP kinases C terminal J4N44_03630 PF00288 GHMP kinases N terminal domain J4N44_03635 PF03550 Outer membrane lipoprotein LolB J4N44_03640 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain J4N44_03640 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain J4N44_03640 PF01488 Shikimate / quinate 5-dehydrogenase J4N44_03645 PF00472 RF-1 domain J4N44_03645 PF03462 PCRF domain J4N44_03650 PF17827 PrmC N-terminal domain J4N44_03650 PF13847 Methyltransferase domain J4N44_03655 PF04247 Invasion gene expression up-regulator, SirB J4N44_03660 PF13369 Transglutaminase-like superfamily J4N44_03665 PF00793 DAHP synthetase I family J4N44_03670 PF02872 5'-nucleotidase, C-terminal domain J4N44_03670 PF00149 Calcineurin-like phosphoesterase J4N44_03675 PF04073 Aminoacyl-tRNA editing domain J4N44_03680 PF00849 RNA pseudouridylate synthase J4N44_03680 PF01479 S4 domain J4N44_03685 PF01713 Smr domain J4N44_03710 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain J4N44_03710 PF02838 Glycosyl hydrolase family 20, domain 2 J4N44_03710 PF03173 Putative carbohydrate binding domain J4N44_03710 PF00728 Glycosyl hydrolase family 20, catalytic domain J4N44_03725 PF00403 Heavy-metal-associated domain J4N44_03730 PF13609 Gram-negative porin J4N44_03735 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) J4N44_03740 PF00749 tRNA synthetases class I (E and Q), catalytic domain J4N44_03745 PF01389 OmpA-like transmembrane domain J4N44_03745 PF00691 OmpA family J4N44_03790 PF00072 Response regulator receiver domain J4N44_03790 PF01584 CheW-like domain J4N44_03795 PF03705 CheR methyltransferase, all-alpha domain J4N44_03795 PF01739 CheR methyltransferase, SAM binding domain J4N44_03800 PF00460 Flagella basal body rod protein J4N44_03805 PF00460 Flagella basal body rod protein J4N44_03805 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N44_03810 PF03963 Flagellar hook capping protein - N-terminal region J4N44_03810 PF13860 FlgD Ig-like domain J4N44_03810 PF13861 FlgD Tudor-like domain J4N44_03815 PF07559 Flagellar basal body protein FlaE J4N44_03815 PF00460 Flagella basal body rod protein J4N44_03815 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N44_03820 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N44_03820 PF00460 Flagella basal body rod protein J4N44_03825 PF00460 Flagella basal body rod protein J4N44_03825 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N44_03830 PF02107 Flagellar L-ring protein J4N44_03835 PF02119 Flagellar P-ring protein J4N44_03840 PF10135 Rod binding protein J4N44_03840 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase J4N44_03845 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N44_03845 PF07196 Flagellin hook IN motif J4N44_03855 PF00700 Bacterial flagellin C-terminal helical region J4N44_03855 PF07196 Flagellin hook IN motif J4N44_03855 PF00669 Bacterial flagellin N-terminal helical region J4N44_03865 PF00700 Bacterial flagellin C-terminal helical region J4N44_03865 PF07196 Flagellin hook IN motif J4N44_03865 PF00669 Bacterial flagellin N-terminal helical region J4N44_03870 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 J4N44_03875 PF05524 PEP-utilising enzyme, N-terminal J4N44_03875 PF00391 PEP-utilising enzyme, mobile domain J4N44_03875 PF02896 PEP-utilising enzyme, TIM barrel domain J4N44_03880 PF00381 PTS HPr component phosphorylation site J4N44_03885 PF00291 Pyridoxal-phosphate dependent enzyme J4N44_03895 PF04354 ZipA, C-terminal FtsZ-binding domain J4N44_03900 PF01653 NAD-dependent DNA ligase adenylation domain J4N44_03900 PF03120 NAD-dependent DNA ligase OB-fold domain J4N44_03900 PF03119 NAD-dependent DNA ligase C4 zinc finger domain J4N44_03900 PF12826 Helix-hairpin-helix motif J4N44_03900 PF00533 BRCA1 C Terminus (BRCT) domain J4N44_03905 PF03573 outer membrane porin, OprD family J4N44_03920 PF16200 C-terminal region of band_7 J4N44_03920 PF01145 SPFH domain / Band 7 family J4N44_03925 PF00085 Thioredoxin J4N44_03935 PF00106 short chain dehydrogenase J4N44_03940 PF01370 NAD dependent epimerase/dehydratase family J4N44_03940 PF08338 Domain of unknown function (DUF1731) J4N44_03945 PF07556 Protein of unknown function (DUF1538) J4N44_03950 PF07556 Protein of unknown function (DUF1538) J4N44_03970 PF12850 Calcineurin-like phosphoesterase superfamily domain J4N44_03985 PF17323 Trans-membrane regulatory protein ToxS J4N44_03990 PF00486 Transcriptional regulatory protein, C terminal J4N44_03995 PF00183 Hsp90 protein J4N44_03995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_04000 PF05191 Adenylate kinase, active site lid J4N44_04005 PF00762 Ferrochelatase J4N44_04010 PF00854 POT family J4N44_04015 PF02357 Transcription termination factor nusG J4N44_04020 PF13537 Glutamine amidotransferase domain J4N44_04020 PF00733 Asparagine synthase J4N44_04025 PF02254 TrkA-N domain J4N44_04025 PF00999 Sodium/hydrogen exchanger family J4N44_04030 PF01047 MarR family J4N44_04030 PF00480 ROK family J4N44_04035 PF01979 Amidohydrolase family J4N44_04040 PF02378 Phosphotransferase system, EIIC J4N44_04040 PF00367 phosphotransferase system, EIIB J4N44_04040 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 J4N44_04045 PF00749 tRNA synthetases class I (E and Q), catalytic domain J4N44_04045 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain J4N44_04050 PF07963 Prokaryotic N-terminal methylation motif J4N44_04055 PF01475 Ferric uptake regulator family J4N44_04065 PF00258 Flavodoxin J4N44_04075 PF00561 alpha/beta hydrolase fold J4N44_04080 PF17206 SeqA protein N-terminal domain J4N44_04080 PF03925 SeqA protein C-terminal domain J4N44_04085 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J4N44_04085 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J4N44_04085 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J4N44_04085 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J4N44_04095 PF01784 NIF3 (NGG1p interacting factor 3) J4N44_04100 PF00285 Citrate synthase, C-terminal domain J4N44_04105 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit J4N44_04110 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit J4N44_04115 PF02910 Fumarate reductase flavoprotein C-term J4N44_04115 PF00890 FAD binding domain J4N44_04120 PF13085 2Fe-2S iron-sulfur cluster binding domain J4N44_04125 PF16870 2-oxoglutarate dehydrogenase C-terminal J4N44_04125 PF02779 Transketolase, pyrimidine binding domain J4N44_04125 PF00676 Dehydrogenase E1 component J4N44_04125 PF16078 2-oxoglutarate dehydrogenase N-terminus J4N44_04130 PF02817 e3 binding domain J4N44_04130 PF00364 Biotin-requiring enzyme J4N44_04130 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J4N44_04135 PF00549 CoA-ligase J4N44_04135 PF08442 ATP-grasp domain J4N44_04140 PF00549 CoA-ligase J4N44_04140 PF02629 CoA binding domain J4N44_04145 PF00950 ABC 3 transport family J4N44_04150 PF00005 ABC transporter J4N44_04155 PF01297 Zinc-uptake complex component A periplasmic J4N44_04160 PF02311 AraC-like ligand binding domain J4N44_04160 PF12833 Helix-turn-helix domain J4N44_04165 PF04023 FeoA domain J4N44_04170 PF07664 Ferrous iron transport protein B C terminus J4N44_04170 PF07670 Nucleoside recognition J4N44_04170 PF17910 FeoB cytosolic helical domain J4N44_04170 PF02421 Ferrous iron transport protein B J4N44_04190 PF03485 Arginyl tRNA synthetase N terminal domain J4N44_04190 PF05746 DALR anticodon binding domain J4N44_04190 PF00750 tRNA synthetases class I (R) J4N44_04195 PF06185 YecM protein J4N44_04200 PF01842 ACT domain J4N44_04200 PF00551 Formyl transferase J4N44_04205 PF13307 Helicase C-terminal domain J4N44_04205 PF04851 Type III restriction enzyme, res subunit J4N44_04210 PF00814 Glycoprotease family J4N44_04220 PF03843 Outer membrane lipoprotein Slp family J4N44_04225 PF00561 alpha/beta hydrolase fold J4N44_04230 PF00501 AMP-binding enzyme J4N44_04230 PF13193 AMP-binding enzyme C-terminal domain J4N44_04235 PF01612 3'-5' exonuclease J4N44_04235 PF00570 HRDC domain J4N44_04240 PF03776 Septum formation topological specificity factor MinE J4N44_04245 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J4N44_04250 PF03775 Septum formation inhibitor MinC, C-terminal domain J4N44_04250 PF05209 Septum formation inhibitor MinC, N-terminal domain J4N44_04255 PF05166 YcgL domain J4N44_04260 PF13406 Transglycosylase SLT domain J4N44_04265 PF03466 LysR substrate binding domain J4N44_04265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_04270 PF07662 Na+ dependent nucleoside transporter C-terminus J4N44_04270 PF07670 Nucleoside recognition J4N44_04270 PF01773 Na+ dependent nucleoside transporter N-terminus J4N44_04275 PF00145 C-5 cytosine-specific DNA methylase J4N44_04285 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain J4N44_04285 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain J4N44_04300 PF00109 Beta-ketoacyl synthase, N-terminal domain J4N44_04300 PF02801 Beta-ketoacyl synthase, C-terminal domain J4N44_04310 PF07977 FabA-like domain J4N44_04315 PF02801 Beta-ketoacyl synthase, C-terminal domain J4N44_04315 PF00109 Beta-ketoacyl synthase, N-terminal domain J4N44_04340 PF00221 Aromatic amino acid lyase J4N44_04345 PF00535 Glycosyl transferase family 2 J4N44_04350 PF07977 FabA-like domain J4N44_04355 PF00501 AMP-binding enzyme J4N44_04355 PF13193 AMP-binding enzyme C-terminal domain J4N44_04365 PF00550 Phosphopantetheine attachment site J4N44_04370 PF00550 Phosphopantetheine attachment site J4N44_04395 PF04820 Tryptophan halogenase J4N44_04400 PF01209 ubiE/COQ5 methyltransferase family J4N44_04425 PF00425 chorismate binding enzyme J4N44_04430 PF00501 AMP-binding enzyme J4N44_04430 PF13193 AMP-binding enzyme C-terminal domain J4N44_04435 PF00550 Phosphopantetheine attachment site J4N44_04435 PF00857 Isochorismatase family J4N44_04440 PF00550 Phosphopantetheine attachment site J4N44_04440 PF00501 AMP-binding enzyme J4N44_04440 PF00668 Condensation domain J4N44_04440 PF00975 Thioesterase domain J4N44_04440 PF13193 AMP-binding enzyme C-terminal domain J4N44_04440 PF00668 Condensation domain J4N44_04440 PF13193 AMP-binding enzyme C-terminal domain J4N44_04440 PF00975 Thioesterase domain J4N44_04440 PF00501 AMP-binding enzyme J4N44_04440 PF00550 Phosphopantetheine attachment site J4N44_04455 PF07715 TonB-dependent Receptor Plug Domain J4N44_04455 PF00593 TonB dependent receptor J4N44_04460 PF00571 CBS domain J4N44_04460 PF03471 Transporter associated domain J4N44_04460 PF01595 Cyclin M transmembrane N-terminal domain J4N44_04465 PF00270 DEAD/DEAH box helicase J4N44_04465 PF00271 Helicase conserved C-terminal domain J4N44_04470 PF02080 TrkA-C domain J4N44_04470 PF02254 TrkA-N domain J4N44_04475 PF02386 Cation transport protein J4N44_04485 PF02696 Uncharacterized ACR, YdiU/UPF0061 family J4N44_04490 PF03480 Bacterial extracellular solute-binding protein, family 7 J4N44_04495 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component J4N44_04500 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J4N44_04505 PF02954 Bacterial regulatory protein, Fis family J4N44_04505 PF00072 Response regulator receiver domain J4N44_04505 PF00158 Sigma-54 interaction domain J4N44_04510 PF02743 Cache domain J4N44_04510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_04510 PF00512 His Kinase A (phospho-acceptor) domain J4N44_04515 PF05698 Bacterial trigger factor protein (TF) C-terminus J4N44_04515 PF05697 Bacterial trigger factor protein (TF) J4N44_04515 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N44_04520 PF00574 Clp protease J4N44_04525 PF07724 AAA domain (Cdc48 subfamily) J4N44_04525 PF10431 C-terminal, D2-small domain, of ClpB protein J4N44_04525 PF06689 ClpX C4-type zinc finger J4N44_04530 PF00004 ATPase family associated with various cellular activities (AAA) J4N44_04530 PF05362 Lon protease (S16) C-terminal proteolytic domain J4N44_04530 PF02190 ATP-dependent protease La (LON) substrate-binding domain J4N44_04535 PF00216 Bacterial DNA-binding protein J4N44_04540 PF13145 PPIC-type PPIASE domain J4N44_04560 PF01966 HD domain J4N44_04560 PF13286 Phosphohydrolase-associated domain J4N44_04570 PF00155 Aminotransferase class I and II J4N44_04575 PF00425 chorismate binding enzyme J4N44_04580 PF16582 Middle domain of thiamine pyrophosphate J4N44_04580 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J4N44_04580 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J4N44_04585 PF12697 Alpha/beta hydrolase family J4N44_04590 PF00378 Enoyl-CoA hydratase/isomerase J4N44_04595 PF13378 Enolase C-terminal domain-like J4N44_04600 PF13193 AMP-binding enzyme C-terminal domain J4N44_04600 PF00501 AMP-binding enzyme J4N44_04605 PF00367 phosphotransferase system, EIIB J4N44_04605 PF02378 Phosphotransferase system, EIIC J4N44_04605 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 J4N44_04610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_04610 PF03466 LysR substrate binding domain J4N44_04620 PF03601 Conserved hypothetical protein 698 J4N44_04625 PF07690 Major Facilitator Superfamily J4N44_04670 PF13533 Biotin-lipoyl like J4N44_04675 PF00873 AcrB/AcrD/AcrF family J4N44_04695 PF00291 Pyridoxal-phosphate dependent enzyme J4N44_04700 PF01037 Lrp/AsnC ligand binding domain J4N44_04700 PF13404 AsnC-type helix-turn-helix domain J4N44_04715 PF09619 Type III secretion system lipoprotein chaperone (YscW) J4N44_04720 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J4N44_04730 PF00990 Diguanylate cyclase, GGDEF domain J4N44_04770 PF00271 Helicase conserved C-terminal domain J4N44_04770 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) J4N44_04770 PF04851 Type III restriction enzyme, res subunit J4N44_04770 PF08463 EcoEI R protein C-terminal J4N44_04775 PF12161 HsdM N-terminal domain J4N44_04775 PF02384 N-6 DNA Methylase J4N44_04780 PF01420 Type I restriction modification DNA specificity domain J4N44_04800 PF13676 TIR domain J4N44_04845 PF00689 Cation transporting ATPase, C-terminus J4N44_04845 PF00690 Cation transporter/ATPase, N-terminus J4N44_04850 PF08032 RNA 2'-O ribose methyltransferase substrate binding J4N44_04850 PF00588 SpoU rRNA Methylase family J4N44_04855 PF11953 Domain of unknown function (DUF3470) J4N44_04855 PF00037 4Fe-4S binding domain J4N44_04865 PF00571 CBS domain J4N44_04865 PF01743 Poly A polymerase head domain J4N44_04870 PF01554 MatE J4N44_04875 PF00403 Heavy-metal-associated domain J4N44_04880 PF01048 Phosphorylase superfamily J4N44_04890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N44_04890 PF00672 HAMP domain J4N44_04895 PF01230 HIT domain J4N44_04910 PF08139 Prokaryotic membrane lipoprotein lipid attachment site J4N44_04910 PF13036 Peptidoglycan-synthase activator LpoB J4N44_04920 PF05728 Uncharacterised protein family (UPF0227) J4N44_04925 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N44_04940 PF00271 Helicase conserved C-terminal domain J4N44_04940 PF00270 DEAD/DEAH box helicase J4N44_04940 PF02559 CarD-like/TRCF domain J4N44_04940 PF03461 TRCF domain J4N44_04940 PF17757 UvrB interaction domain J4N44_04950 PF12704 MacB-like periplasmic core domain J4N44_04950 PF02687 FtsX-like permease family J4N44_04955 PF00005 ABC transporter J4N44_04960 PF02687 FtsX-like permease family J4N44_04960 PF12704 MacB-like periplasmic core domain J4N44_04970 PF03772 Competence protein J4N44_04970 PF00753 Metallo-beta-lactamase superfamily J4N44_04975 PF00664 ABC transporter transmembrane region J4N44_04975 PF00005 ABC transporter J4N44_04980 PF02606 Tetraacyldisaccharide-1-P 4'-kinase J4N44_04985 PF03966 Trm112p-like protein J4N44_04990 PF02348 Cytidylyltransferase J4N44_04995 PF04293 SpoVR like protein J4N44_05000 PF04285 Protein of unknown function (DUF444) J4N44_05005 PF08298 PrkA AAA domain J4N44_05005 PF06798 PrkA serine protein kinase C-terminal domain J4N44_05010 PF03887 YfbU domain J4N44_05020 PF04055 Radical SAM superfamily J4N44_05030 PF01228 Glycine radical J4N44_05030 PF02901 Pyruvate formate lyase-like J4N44_05045 PF00005 ABC transporter J4N44_05050 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N44_05055 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_05060 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_05065 PF03372 Endonuclease/Exonuclease/phosphatase family J4N44_05070 PF00672 HAMP domain J4N44_05070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N44_05075 PF10689 Protein of unknown function (DUF2496) J4N44_05085 PF01925 Sulfite exporter TauE/SafE J4N44_05090 PF06733 DEAD_2 J4N44_05090 PF13307 Helicase C-terminal domain J4N44_05100 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) J4N44_05105 PF00849 RNA pseudouridylate synthase J4N44_05110 PF03971 Monomeric isocitrate dehydrogenase J4N44_05115 PF00313 'Cold-shock' DNA-binding domain J4N44_05120 PF02617 ATP-dependent Clp protease adaptor protein ClpS J4N44_05125 PF00004 ATPase family associated with various cellular activities (AAA) J4N44_05125 PF07724 AAA domain (Cdc48 subfamily) J4N44_05125 PF17871 AAA lid domain J4N44_05125 PF02861 Clp amino terminal domain, pathogenicity island component J4N44_05125 PF10431 C-terminal, D2-small domain, of ClpB protein J4N44_05130 PF01176 Translation initiation factor 1A / IF-1 J4N44_05135 PF04377 Arginine-tRNA-protein transferase, C terminus J4N44_05135 PF04376 Arginine-tRNA-protein transferase, N terminus J4N44_05140 PF03588 Leucyl/phenylalanyl-tRNA protein transferase J4N44_05150 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J4N44_05155 PF10692 Protein of unknown function (DUF2498) J4N44_05160 PF08272 Topoisomerase I zinc-ribbon-like J4N44_05160 PF01131 DNA topoisomerase J4N44_05160 PF01751 Toprim domain J4N44_05160 PF01396 Topoisomerase DNA binding C4 zinc finger J4N44_05165 PF00483 Nucleotidyl transferase J4N44_05170 PF08323 Starch synthase catalytic domain J4N44_05170 PF00534 Glycosyl transferases group 1 J4N44_05190 PF04994 TfoX C-terminal domain J4N44_05190 PF04993 TfoX N-terminal domain J4N44_05195 PF00356 Bacterial regulatory proteins, lacI family J4N44_05200 PF02613 Nitrate reductase delta subunit J4N44_05205 PF00486 Transcriptional regulatory protein, C terminal J4N44_05205 PF00072 Response regulator receiver domain J4N44_05210 PF02698 DUF218 domain J4N44_05215 PF13847 Methyltransferase domain J4N44_05220 PF03882 MukF winged-helix domain J4N44_05220 PF17193 MukF C-terminal domain J4N44_05220 PF17192 MukF middle domain J4N44_05225 PF04288 MukE-like family J4N44_05230 PF04310 MukB N-terminal J4N44_05230 PF16330 MukB hinge domain J4N44_05240 PF18030 RimK PreATP-grasp domain J4N44_05240 PF08443 RimK-like ATP-grasp domain J4N44_05250 PF18030 RimK PreATP-grasp domain J4N44_05250 PF08443 RimK-like ATP-grasp domain J4N44_05255 PF08003 Protein of unknown function (DUF1698) J4N44_05260 PF13649 Methyltransferase domain J4N44_05265 PF01904 Protein of unknown function DUF72 J4N44_05270 PF02938 GAD domain J4N44_05270 PF00152 tRNA synthetases class II (D, K and N) J4N44_05270 PF01336 OB-fold nucleic acid binding domain J4N44_05275 PF02075 Crossover junction endodeoxyribonuclease RuvC J4N44_05280 PF00672 HAMP domain J4N44_05280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N44_05280 PF02203 Tar ligand binding domain homologue J4N44_05285 PF01330 RuvA N terminal domain J4N44_05285 PF07499 RuvA, C-terminal domain J4N44_05290 PF05496 Holliday junction DNA helicase RuvB P-loop domain J4N44_05290 PF05491 RuvB C-terminal winged helix domain J4N44_05290 PF17864 RuvB AAA lid domain J4N44_05295 PF01654 Cytochrome bd terminal oxidase subunit I J4N44_05300 PF02322 Cytochrome bd terminal oxidase subunit II J4N44_05305 PF08173 Membrane bound YbgT-like protein J4N44_05315 PF03061 Thioesterase superfamily J4N44_05320 PF01618 MotA/TolQ/ExbB proton channel family J4N44_05325 PF02472 Biopolymer transport protein ExbD/TolR J4N44_05335 PF04052 TolB amino-terminal domain J4N44_05335 PF07676 WD40-like Beta Propeller Repeat J4N44_05340 PF00691 OmpA family J4N44_05345 PF16331 TolA binding protein trimerisation J4N44_05345 PF13174 Tetratricopeptide repeat J4N44_05350 PF01380 SIS domain J4N44_05350 PF00571 CBS domain J4N44_05355 PF03928 Haem-degrading J4N44_05360 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J4N44_05360 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J4N44_05365 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N44_05365 PF00381 PTS HPr component phosphorylation site J4N44_05365 PF02896 PEP-utilising enzyme, TIM barrel domain J4N44_05365 PF00391 PEP-utilising enzyme, mobile domain J4N44_05365 PF05524 PEP-utilising enzyme, N-terminal J4N44_05375 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N44_05380 PF01228 Glycine radical J4N44_05380 PF02901 Pyruvate formate lyase-like J4N44_05385 PF04055 Radical SAM superfamily J4N44_05390 PF01370 NAD dependent epimerase/dehydratase family J4N44_05395 PF00923 Transaldolase/Fructose-6-phosphate aldolase J4N44_05400 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N44_05405 PF12833 Helix-turn-helix domain J4N44_05410 PF00465 Iron-containing alcohol dehydrogenase J4N44_05415 PF13419 Haloacid dehalogenase-like hydrolase J4N44_05420 PF01238 Phosphomannose isomerase type I J4N44_05425 PF02445 Quinolinate synthetase A protein J4N44_05435 PF03994 Domain of Unknown Function (DUF350) J4N44_05445 PF03738 Glutathionylspermidine synthase preATP-grasp J4N44_05455 PF00072 Response regulator receiver domain J4N44_05455 PF09308 LuxQ, periplasmic J4N44_05455 PF00512 His Kinase A (phospho-acceptor) domain J4N44_05455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_05460 PF06610 L-alanine exporter J4N44_05485 PF12833 Helix-turn-helix domain J4N44_05500 PF00263 Bacterial type II and III secretion system protein J4N44_05500 PF03958 Bacterial type II/III secretion system short domain J4N44_05515 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF J4N44_05530 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI J4N44_05535 PF01514 Secretory protein of YscJ/FliF family J4N44_05545 PF02108 Flagellar assembly protein FliH J4N44_05580 PF01312 FlhB HrpN YscU SpaS Family J4N44_05585 PF01311 Bacterial export proteins, family 1 J4N44_05590 PF01313 Bacterial export proteins, family 3 J4N44_05595 PF00813 FliP family J4N44_05600 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J4N44_05615 PF18269 T3SS EscN ATPase C-terminal domain J4N44_05615 PF02874 ATP synthase alpha/beta family, beta-barrel domain J4N44_05615 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N44_05620 PF07201 HrpJ-like domain J4N44_05625 PF09059 TyeA J4N44_05645 PF00771 FHIPEP family J4N44_05650 PF09621 Type III secretion system regulator (LcrR) J4N44_05665 PF07720 Tetratricopeptide repeat J4N44_05675 PF05844 YopD protein J4N44_05685 PF13411 MerR HTH family regulatory protein J4N44_05690 PF02627 Carboxymuconolactone decarboxylase family J4N44_05695 PF02264 LamB porin J4N44_05695 PF11471 Maltoporin periplasmic N-terminal extension J4N44_05700 PF00356 Bacterial regulatory proteins, lacI family J4N44_05705 PF02378 Phosphotransferase system, EIIC J4N44_05705 PF00367 phosphotransferase system, EIIB J4N44_05710 PF00294 pfkB family carbohydrate kinase J4N44_05715 PF08244 Glycosyl hydrolases family 32 C terminal J4N44_05715 PF00251 Glycosyl hydrolases family 32 N-terminal domain J4N44_05720 PF08274 PhnA Zinc-Ribbon J4N44_05720 PF03831 PhnA domain J4N44_05730 PF00593 TonB dependent receptor J4N44_05730 PF07715 TonB-dependent Receptor Plug Domain J4N44_05735 PF00325 Bacterial regulatory proteins, crp family J4N44_05735 PF00027 Cyclic nucleotide-binding domain J4N44_05760 PF01554 MatE J4N44_05765 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N44_05765 PF00005 ABC transporter J4N44_05770 PF00005 ABC transporter J4N44_05770 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N44_05775 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N44_05780 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_05790 PF00690 Cation transporter/ATPase, N-terminus J4N44_05790 PF00689 Cation transporting ATPase, C-terminus J4N44_05800 PF00893 Small Multidrug Resistance protein J4N44_05805 PF00893 Small Multidrug Resistance protein J4N44_05825 PF02743 Cache domain J4N44_05825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N44_05825 PF00672 HAMP domain J4N44_05840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N44_05840 PF00529 HlyD membrane-fusion protein of T1SS J4N44_05845 PF00873 AcrB/AcrD/AcrF family J4N44_05855 PF07729 FCD domain J4N44_05855 PF00392 Bacterial regulatory proteins, gntR family J4N44_05860 PF07687 Peptidase dimerisation domain J4N44_05860 PF01546 Peptidase family M20/M25/M40 J4N44_05865 PF03606 C4-dicarboxylate anaerobic carrier J4N44_05875 PF01557 Fumarylacetoacetate (FAA) hydrolase family J4N44_05895 PF00474 Sodium:solute symporter family J4N44_05910 PF14579 Helix-hairpin-helix motif J4N44_05910 PF00929 Exonuclease J4N44_05910 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J4N44_05910 PF07733 Bacterial DNA polymerase III alpha NTPase domain J4N44_05910 PF02811 PHP domain J4N44_05915 PF00571 CBS domain J4N44_05920 PF00392 Bacterial regulatory proteins, gntR family J4N44_05920 PF07729 FCD domain J4N44_05930 PF00392 Bacterial regulatory proteins, gntR family J4N44_05930 PF07729 FCD domain J4N44_05940 PF05426 Alginate lyase J4N44_05940 PF07940 Heparinase II/III-like protein J4N44_05945 PF07940 Heparinase II/III-like protein J4N44_05945 PF05426 Alginate lyase J4N44_05950 PF07883 Cupin domain J4N44_05955 PF00294 pfkB family carbohydrate kinase J4N44_05960 PF01081 KDPG and KHG aldolase J4N44_05965 PF00474 Sodium:solute symporter family J4N44_05975 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J4N44_05975 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain J4N44_05980 PF00141 Peroxidase J4N44_05985 PF00579 tRNA synthetases class I (W and Y) J4N44_06000 PF03372 Endonuclease/Exonuclease/phosphatase family J4N44_06005 PF00672 HAMP domain J4N44_06005 PF02743 Cache domain J4N44_06005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N44_06010 PF01752 Collagenase J4N44_06010 PF04151 Bacterial pre-peptidase C-terminal domain J4N44_06010 PF08453 Peptidase family M9 N-terminal J4N44_06025 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) J4N44_06035 PF03466 LysR substrate binding domain J4N44_06035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_06045 PF05222 Alanine dehydrogenase/PNT, N-terminal domain J4N44_06045 PF01262 Alanine dehydrogenase/PNT, C-terminal domain J4N44_06050 PF01037 Lrp/AsnC ligand binding domain J4N44_06055 PF17854 FtsK alpha domain J4N44_06055 PF13491 4TM region of DNA translocase FtsK/SpoIIIE J4N44_06055 PF01580 FtsK/SpoIIIE family J4N44_06055 PF09397 Ftsk gamma domain J4N44_06060 PF03548 Outer membrane lipoprotein carrier protein LolA J4N44_06065 PF00004 ATPase family associated with various cellular activities (AAA) J4N44_06065 PF16193 AAA C-terminal domain J4N44_06065 PF12002 MgsA AAA+ ATPase C terminal J4N44_06070 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J4N44_06070 PF02403 Seryl-tRNA synthetase N-terminal domain J4N44_06085 PF01258 Prokaryotic dksA/traR C4-type zinc finger J4N44_06090 PF00202 Aminotransferase class-III J4N44_06095 PF04055 Radical SAM superfamily J4N44_06095 PF06968 Biotin and Thiamin Synthesis associated domain J4N44_06100 PF00155 Aminotransferase class I and II J4N44_06105 PF08241 Methyltransferase domain J4N44_06120 PF01435 Peptidase family M48 J4N44_06130 PF00106 short chain dehydrogenase J4N44_06155 PF16036 Chalcone isomerase-like J4N44_06165 PF08328 Adenylosuccinate lyase C-terminal J4N44_06165 PF00206 Lyase J4N44_06170 PF04356 Protein of unknown function (DUF489) J4N44_06185 PF00294 pfkB family carbohydrate kinase J4N44_06190 PF00816 H-NS histone family J4N44_06195 PF03553 Na+/H+ antiporter family J4N44_06200 PF00158 Sigma-54 interaction domain J4N44_06200 PF00072 Response regulator receiver domain J4N44_06200 PF02954 Bacterial regulatory protein, Fis family J4N44_06205 PF01634 ATP phosphoribosyltransferase J4N44_06205 PF08029 HisG, C-terminal domain J4N44_06210 PF00815 Histidinol dehydrogenase J4N44_06215 PF00155 Aminotransferase class I and II J4N44_06220 PF00475 Imidazoleglycerol-phosphate dehydratase J4N44_06220 PF08645 Polynucleotide kinase 3 phosphatase J4N44_06225 PF00117 Glutamine amidotransferase class-I J4N44_06230 PF00977 Histidine biosynthesis protein J4N44_06235 PF00977 Histidine biosynthesis protein J4N44_06240 PF01502 Phosphoribosyl-AMP cyclohydrolase J4N44_06240 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase J4N44_06245 PF02810 SEC-C motif J4N44_06250 PF00563 EAL domain J4N44_06250 PF08668 HDOD domain J4N44_06255 PF00149 Calcineurin-like phosphoesterase J4N44_06260 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J4N44_06265 PF09190 DALR domain J4N44_06265 PF01406 tRNA synthetases class I (C) catalytic domain J4N44_06270 PF00265 Thymidine kinase J4N44_06275 PF02698 DUF218 domain J4N44_06300 PF01226 Formate/nitrite transporter J4N44_06310 PF03649 Uncharacterised protein family (UPF0014) J4N44_06315 PF06796 Periplasmic nitrate reductase protein NapE J4N44_06320 PF03264 NapC/NirT cytochrome c family, N-terminal region J4N44_06325 PF00384 Molybdopterin oxidoreductase J4N44_06325 PF18364 Molybdopterin oxidoreductase N-terminal domain J4N44_06325 PF01568 Molydopterin dinucleotide binding domain J4N44_06330 PF16875 Glycosyl hydrolase family 36 N-terminal domain J4N44_06330 PF16874 Glycosyl hydrolase family 36 C-terminal domain J4N44_06335 PF01297 Zinc-uptake complex component A periplasmic J4N44_06340 PF00005 ABC transporter J4N44_06345 PF00950 ABC 3 transport family J4N44_06350 PF00950 ABC 3 transport family J4N44_06355 PF01368 DHH family J4N44_06355 PF02833 DHHA2 domain J4N44_06365 PF00005 ABC transporter J4N44_06370 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N44_06370 PF00005 ABC transporter J4N44_06375 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N44_06375 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_06380 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_06385 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N44_06390 PF00158 Sigma-54 interaction domain J4N44_06390 PF02954 Bacterial regulatory protein, Fis family J4N44_06395 PF04012 PspA/IM30 family J4N44_06400 PF06667 Phage shock protein B J4N44_06415 PF13533 Biotin-lipoyl like J4N44_06420 PF00873 AcrB/AcrD/AcrF family J4N44_06425 PF03352 Methyladenine glycosylase J4N44_06430 PF03280 Proteobacterial lipase chaperone protein J4N44_06435 PF00561 alpha/beta hydrolase fold J4N44_06440 PF01053 Cys/Met metabolism PLP-dependent enzyme J4N44_06445 PF13091 PLD-like domain J4N44_06445 PF13396 Phospholipase_D-nuclease N-terminal J4N44_06450 PF00209 Sodium:neurotransmitter symporter family J4N44_06455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N44_06455 PF12729 Four helix bundle sensory module for signal transduction J4N44_06455 PF00672 HAMP domain J4N44_06460 PF00849 RNA pseudouridylate synthase J4N44_06470 PF00970 Oxidoreductase FAD-binding domain J4N44_06470 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N44_06470 PF00175 Oxidoreductase NAD-binding domain J4N44_06475 PF03063 Prismane/CO dehydrogenase family J4N44_06480 PF01590 GAF domain J4N44_06480 PF00158 Sigma-54 interaction domain J4N44_06490 PF01066 CDP-alcohol phosphatidyltransferase J4N44_06495 PF00005 ABC transporter J4N44_06500 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_06505 PF13416 Bacterial extracellular solute-binding protein J4N44_06510 PF09335 SNARE associated Golgi protein J4N44_06520 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster J4N44_06520 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N44_06530 PF00512 His Kinase A (phospho-acceptor) domain J4N44_06530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_06535 PF00196 Bacterial regulatory proteins, luxR family J4N44_06535 PF00072 Response regulator receiver domain J4N44_06545 PF01740 STAS domain J4N44_06545 PF00916 Sulfate permease family J4N44_06555 PF06945 Protein of unknown function (DUF1289) J4N44_06565 PF00149 Calcineurin-like phosphoesterase J4N44_06565 PF02872 5'-nucleotidase, C-terminal domain J4N44_06580 PF01386 Ribosomal L25p family J4N44_06585 PF02709 N-terminal domain of galactosyltransferase J4N44_06585 PF00535 Glycosyl transferase family 2 J4N44_06595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_06600 PF00486 Transcriptional regulatory protein, C terminal J4N44_06600 PF00072 Response regulator receiver domain J4N44_06610 PF00271 Helicase conserved C-terminal domain J4N44_06610 PF04851 Type III restriction enzyme, res subunit J4N44_06615 PF00849 RNA pseudouridylate synthase J4N44_06615 PF01479 S4 domain J4N44_06620 PF07690 Major Facilitator Superfamily J4N44_06630 PF00474 Sodium:solute symporter family J4N44_06635 PF16875 Glycosyl hydrolase family 36 N-terminal domain J4N44_06635 PF16874 Glycosyl hydrolase family 36 C-terminal domain J4N44_06640 PF00356 Bacterial regulatory proteins, lacI family J4N44_06645 PF13460 NAD(P)H-binding J4N44_06645 PF11066 Protein of unknown function (DUF2867) J4N44_06650 PF01554 MatE J4N44_06655 PF00005 ABC transporter J4N44_06670 PF06965 Na+/H+ antiporter 1 J4N44_06675 PF16295 Tetracyclin repressor-like, C-terminal domain J4N44_06675 PF00440 Bacterial regulatory proteins, tetR family J4N44_06680 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J4N44_06680 PF02770 Acyl-CoA dehydrogenase, middle domain J4N44_06680 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J4N44_06680 PF09317 Domain of unknown function (DUF1974) J4N44_06685 PF12241 Trans-2-enoyl-CoA reductase catalytic region J4N44_06685 PF07055 Enoyl reductase FAD binding domain J4N44_06685 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase J4N44_06690 PF02080 TrkA-C domain J4N44_06690 PF06826 Predicted Permease Membrane Region J4N44_06695 PF00462 Glutaredoxin J4N44_06700 PF00465 Iron-containing alcohol dehydrogenase J4N44_06705 PF01380 SIS domain J4N44_06705 PF01418 Helix-turn-helix domain, rpiR family J4N44_06710 PF00282 Pyridoxal-dependent decarboxylase conserved domain J4N44_06720 PF03956 Lysine exporter LysO J4N44_06730 PF04993 TfoX N-terminal domain J4N44_06730 PF04994 TfoX C-terminal domain J4N44_06745 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N44_06745 PF00512 His Kinase A (phospho-acceptor) domain J4N44_06745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_06755 PF00266 Aminotransferase class-V J4N44_06765 PF08447 PAS fold J4N44_06765 PF00563 EAL domain J4N44_06765 PF00990 Diguanylate cyclase, GGDEF domain J4N44_06765 PF05231 MASE1 J4N44_06765 PF13426 PAS domain J4N44_06765 PF08448 PAS fold J4N44_06785 PF03466 LysR substrate binding domain J4N44_06785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_06790 PF02447 GntP family permease J4N44_06795 PF00291 Pyridoxal-phosphate dependent enzyme J4N44_06800 PF00664 ABC transporter transmembrane region J4N44_06800 PF00005 ABC transporter J4N44_06805 PF00005 ABC transporter J4N44_06805 PF00664 ABC transporter transmembrane region J4N44_06810 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N44_06820 PF00266 Aminotransferase class-V J4N44_06830 PF08448 PAS fold J4N44_06830 PF00990 Diguanylate cyclase, GGDEF domain J4N44_06835 PF00939 Sodium:sulfate symporter transmembrane region J4N44_06840 PF02698 DUF218 domain J4N44_06845 PF03949 Malic enzyme, NAD binding domain J4N44_06845 PF00390 Malic enzyme, N-terminal domain J4N44_06850 PF08482 ATP-dependent helicase C-terminal J4N44_06850 PF00271 Helicase conserved C-terminal domain J4N44_06850 PF04408 Helicase associated domain (HA2) J4N44_06850 PF00270 DEAD/DEAH box helicase J4N44_06860 PF16655 PhoD-like phosphatase, N-terminal domain J4N44_06860 PF09423 PhoD-like phosphatase J4N44_06890 PF00939 Sodium:sulfate symporter transmembrane region J4N44_06895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_06895 PF00512 His Kinase A (phospho-acceptor) domain J4N44_06895 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N44_06900 PF00158 Sigma-54 interaction domain J4N44_06900 PF02954 Bacterial regulatory protein, Fis family J4N44_06900 PF00072 Response regulator receiver domain J4N44_06905 PF03707 Bacterial signalling protein N terminal repeat J4N44_06905 PF00563 EAL domain J4N44_06905 PF00990 Diguanylate cyclase, GGDEF domain J4N44_06910 PF11871 Domain of unknown function (DUF3391) J4N44_06910 PF01966 HD domain J4N44_06915 PF01810 LysE type translocator J4N44_06920 PF11230 Protein of unknown function (DUF3029) J4N44_06925 PF04055 Radical SAM superfamily J4N44_06930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_06930 PF03466 LysR substrate binding domain J4N44_06935 PF03741 Integral membrane protein TerC family J4N44_06945 PF01966 HD domain J4N44_06950 PF00106 short chain dehydrogenase J4N44_06955 PF00465 Iron-containing alcohol dehydrogenase J4N44_06960 PF03222 Tryptophan/tyrosine permease family J4N44_06975 PF00005 ABC transporter J4N44_06980 PF01497 Periplasmic binding protein J4N44_06985 PF01032 FecCD transport family J4N44_06990 PF00593 TonB dependent receptor J4N44_06990 PF07715 TonB-dependent Receptor Plug Domain J4N44_07005 PF00664 ABC transporter transmembrane region J4N44_07005 PF00005 ABC transporter J4N44_07010 PF00664 ABC transporter transmembrane region J4N44_07010 PF00005 ABC transporter J4N44_07015 PF07963 Prokaryotic N-terminal methylation motif J4N44_07025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_07025 PF03466 LysR substrate binding domain J4N44_07035 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J4N44_07035 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J4N44_07050 PF00012 Hsp70 protein J4N44_07055 PF00012 Hsp70 protein J4N44_07065 PF00990 Diguanylate cyclase, GGDEF domain J4N44_07095 PF00384 Molybdopterin oxidoreductase J4N44_07095 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J4N44_07095 PF01568 Molydopterin dinucleotide binding domain J4N44_07100 PF13247 4Fe-4S dicluster domain J4N44_07100 PF12800 4Fe-4S binding domain J4N44_07105 PF04976 DMSO reductase anchor subunit (DmsC) J4N44_07110 PF02613 Nitrate reductase delta subunit J4N44_07120 PF02525 Flavodoxin-like fold J4N44_07125 PF11898 Domain of unknown function (DUF3418) J4N44_07125 PF00270 DEAD/DEAH box helicase J4N44_07125 PF04408 Helicase associated domain (HA2) J4N44_07125 PF00271 Helicase conserved C-terminal domain J4N44_07125 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold J4N44_07155 PF04204 Homoserine O-succinyltransferase J4N44_07170 PF00893 Small Multidrug Resistance protein J4N44_07175 PF13520 Amino acid permease J4N44_07180 PF01810 LysE type translocator J4N44_07185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_07185 PF03466 LysR substrate binding domain J4N44_07190 PF03279 Bacterial lipid A biosynthesis acyltransferase J4N44_07205 PF01047 MarR family J4N44_07215 PF02074 Carboxypeptidase Taq (M32) metallopeptidase J4N44_07220 PF00196 Bacterial regulatory proteins, luxR family J4N44_07220 PF00072 Response regulator receiver domain J4N44_07255 PF01810 LysE type translocator J4N44_07265 PF00529 HlyD membrane-fusion protein of T1SS J4N44_07265 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N44_07270 PF00873 AcrB/AcrD/AcrF family J4N44_07275 PF16868 NMT1-like family J4N44_07280 PF01925 Sulfite exporter TauE/SafE J4N44_07285 PF01970 Tripartite tricarboxylate transporter TctA family J4N44_07305 PF00583 Acetyltransferase (GNAT) family J4N44_07320 PF00069 Protein kinase domain J4N44_07320 PF03793 PASTA domain J4N44_07335 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE J4N44_07355 PF07724 AAA domain (Cdc48 subfamily) J4N44_07355 PF00004 ATPase family associated with various cellular activities (AAA) J4N44_07355 PF17871 AAA lid domain J4N44_07355 PF10431 C-terminal, D2-small domain, of ClpB protein J4N44_07375 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath J4N44_07380 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath J4N44_07410 PF06715 Gp5 C-terminal repeat (3 copies) J4N44_07410 PF04717 Type VI secretion system, phage-baseplate injector J4N44_07430 PF00285 Citrate synthase, C-terminal domain J4N44_07435 PF00330 Aconitase family (aconitate hydratase) J4N44_07435 PF00694 Aconitase C-terminal domain J4N44_07440 PF04303 PrpF protein J4N44_07445 PF16177 Acetyl-coenzyme A synthetase N-terminus J4N44_07445 PF00501 AMP-binding enzyme J4N44_07445 PF13193 AMP-binding enzyme C-terminal domain J4N44_07460 PF01544 CorA-like Mg2+ transporter protein J4N44_07475 PF04055 Radical SAM superfamily J4N44_07480 PF06508 Queuosine biosynthesis protein QueC J4N44_07485 PF00990 Diguanylate cyclase, GGDEF domain J4N44_07485 PF13185 GAF domain J4N44_07495 PF00691 OmpA family J4N44_07495 PF05736 OprF membrane domain J4N44_07515 PF13322 Domain of unknown function (DUF4092) J4N44_07515 PF17291 N-terminal domain of M60-like peptidases J4N44_07515 PF13402 Peptidase M60, enhancin and enhancin-like J4N44_07525 PF02397 Bacterial sugar transferase J4N44_07530 PF00535 Glycosyl transferase family 2 J4N44_07535 PF00534 Glycosyl transferases group 1 J4N44_07535 PF13439 Glycosyltransferase Family 4 J4N44_07565 PF00534 Glycosyl transferases group 1 J4N44_07575 PF02954 Bacterial regulatory protein, Fis family J4N44_07575 PF00072 Response regulator receiver domain J4N44_07575 PF00158 Sigma-54 interaction domain J4N44_07590 PF10531 SLBB domain J4N44_07590 PF02563 Polysaccharide biosynthesis/export protein J4N44_07595 PF00691 OmpA family J4N44_07600 PF01740 STAS domain J4N44_07605 PF01068 ATP dependent DNA ligase domain J4N44_07605 PF14743 DNA ligase OB-like domain J4N44_07615 PF01554 MatE J4N44_07620 PF00677 Lumazine binding domain J4N44_07630 PF03881 Fructosamine kinase J4N44_07635 PF00072 Response regulator receiver domain J4N44_07635 PF01339 CheB methylesterase J4N44_07640 PF00990 Diguanylate cyclase, GGDEF domain J4N44_07640 PF05230 MASE2 domain J4N44_07650 PF00877 NlpC/P60 family J4N44_07655 PF02743 Cache domain J4N44_07655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N44_07655 PF00672 HAMP domain J4N44_07695 PF03942 DTW domain J4N44_07700 PF00480 ROK family J4N44_07710 PF00994 Probable molybdopterin binding domain J4N44_07710 PF03453 MoeA N-terminal region (domain I and II) J4N44_07710 PF03454 MoeA C-terminal region (domain IV) J4N44_07715 PF12804 MobA-like NTP transferase domain J4N44_07720 PF08402 TOBE domain J4N44_07720 PF00005 ABC transporter J4N44_07725 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_07730 PF12849 PBP superfamily domain J4N44_07735 PF00158 Sigma-54 interaction domain J4N44_07735 PF00072 Response regulator receiver domain J4N44_07735 PF02954 Bacterial regulatory protein, Fis family J4N44_07740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_07740 PF00512 His Kinase A (phospho-acceptor) domain J4N44_07755 PF00005 ABC transporter J4N44_07755 PF12848 ABC transporter J4N44_07760 PF02634 FdhD/NarQ family J4N44_07780 PF02613 Nitrate reductase delta subunit J4N44_07790 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J4N44_07790 PF00384 Molybdopterin oxidoreductase J4N44_07790 PF01568 Molydopterin dinucleotide binding domain J4N44_07795 PF13247 4Fe-4S dicluster domain J4N44_07815 PF02146 Sir2 family J4N44_07820 PF13416 Bacterial extracellular solute-binding protein J4N44_07825 PF13416 Bacterial extracellular solute-binding protein J4N44_07830 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_07835 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_07840 PF00005 ABC transporter J4N44_07840 PF08402 TOBE domain J4N44_07850 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase J4N44_07860 PF01171 PP-loop family J4N44_07865 PF00582 Universal stress protein family J4N44_07870 PF13545 Crp-like helix-turn-helix domain J4N44_07870 PF00027 Cyclic nucleotide-binding domain J4N44_07885 PF00403 Heavy-metal-associated domain J4N44_07895 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP J4N44_07895 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J4N44_07910 PF00115 Cytochrome C and Quinol oxidase polypeptide I J4N44_07925 PF00072 Response regulator receiver domain J4N44_07925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_07925 PF00512 His Kinase A (phospho-acceptor) domain J4N44_07925 PF09308 LuxQ, periplasmic J4N44_07990 PF01381 Helix-turn-helix J4N44_08000 PF00145 C-5 cytosine-specific DNA methylase J4N44_08025 PF17414 MatP C-terminal ribbon-helix-helix domain J4N44_08025 PF06303 MatP N-terminal domain J4N44_08030 PF13654 AAA domain J4N44_08030 PF05362 Lon protease (S16) C-terminal proteolytic domain J4N44_08035 PF07977 FabA-like domain J4N44_08040 PF04957 Ribosome modulation factor J4N44_08050 PF12848 ABC transporter J4N44_08050 PF16326 ABC transporter C-terminal domain J4N44_08050 PF00005 ABC transporter J4N44_08060 PF10672 S-adenosylmethionine-dependent methyltransferase J4N44_08060 PF02926 THUMP domain J4N44_08060 PF01170 Putative RNA methylase family UPF0020 J4N44_08065 PF07126 Cell-division protein ZapC J4N44_08070 PF01180 Dihydroorotate dehydrogenase J4N44_08075 PF05088 Bacterial NAD-glutamate dehydrogenase J4N44_08085 PF11940 Domain of unknown function (DUF3458) Ig-like fold J4N44_08085 PF17432 Domain of unknown function (DUF3458_C) ARM repeats J4N44_08085 PF01433 Peptidase family M1 domain J4N44_08095 PF17804 Tail specific protease N-terminal domain J4N44_08095 PF03572 Peptidase family S41 J4N44_08095 PF00595 PDZ domain J4N44_08095 PF11818 C-terminal domain of tail specific protease (DUF3340) J4N44_08100 PF04352 ProQ/FINO family J4N44_08100 PF17516 ProQ C-terminal domain J4N44_08105 PF13185 GAF domain J4N44_08110 PF00005 ABC transporter J4N44_08110 PF00664 ABC transporter transmembrane region J4N44_08115 PF04403 Paraquat-inducible protein A J4N44_08120 PF02470 MlaD protein J4N44_08125 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF J4N44_08125 PF01189 16S rRNA methyltransferase RsmB/F J4N44_08125 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF J4N44_08145 PF00793 DAHP synthetase I family J4N44_08150 PF04461 Protein of unknown function (DUF520) J4N44_08155 PF10414 Sirohaem synthase dimerisation region J4N44_08155 PF14824 Sirohaem biosynthesis protein central J4N44_08155 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N44_08160 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N44_08165 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_08170 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_08175 PF00005 ABC transporter J4N44_08180 PF01027 Inhibitor of apoptosis-promoting Bax1 J4N44_08185 PF04358 DsrC like protein J4N44_08190 PF00708 Acylphosphatase J4N44_08195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N44_08195 PF00672 HAMP domain J4N44_08195 PF02743 Cache domain J4N44_08200 PF10672 S-adenosylmethionine-dependent methyltransferase J4N44_08200 PF17785 PUA-like domain J4N44_08235 PF00691 OmpA family J4N44_08235 PF05736 OprF membrane domain J4N44_08240 PF00563 EAL domain J4N44_08240 PF00990 Diguanylate cyclase, GGDEF domain J4N44_08240 PF13188 PAS domain J4N44_08240 PF03707 Bacterial signalling protein N terminal repeat J4N44_08245 PF00512 His Kinase A (phospho-acceptor) domain J4N44_08245 PF00672 HAMP domain J4N44_08245 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J4N44_08245 PF00072 Response regulator receiver domain J4N44_08245 PF01627 Hpt domain J4N44_08245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_08260 PF12464 Maltose acetyltransferase J4N44_08260 PF00132 Bacterial transferase hexapeptide (six repeats) J4N44_08270 PF01928 CYTH domain J4N44_08280 PF01047 MarR family J4N44_08290 PF03729 Short repeat of unknown function (DUF308) J4N44_08295 PF00924 Mechanosensitive ion channel J4N44_08305 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family J4N44_08315 PF00691 OmpA family J4N44_08315 PF05736 OprF membrane domain J4N44_08350 PF00437 Type II/IV secretion system protein J4N44_08365 PF04972 BON domain J4N44_08365 PF00263 Bacterial type II and III secretion system protein J4N44_08365 PF13629 Pilus formation protein N terminal region J4N44_08385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_08385 PF03466 LysR substrate binding domain J4N44_08390 PF12833 Helix-turn-helix domain J4N44_08400 PF01752 Collagenase J4N44_08400 PF08453 Peptidase family M9 N-terminal J4N44_08400 PF04151 Bacterial pre-peptidase C-terminal domain J4N44_08410 PF00582 Universal stress protein family J4N44_08415 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J4N44_08415 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain J4N44_08420 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase J4N44_08425 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain J4N44_08425 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain J4N44_08430 PF12833 Helix-turn-helix domain J4N44_08435 PF00593 TonB dependent receptor J4N44_08435 PF07715 TonB-dependent Receptor Plug Domain J4N44_08440 PF12431 Transcriptional regulator J4N44_08440 PF00072 Response regulator receiver domain J4N44_08445 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain J4N44_08445 PF17203 Single cache domain 3 J4N44_08445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_08445 PF00989 PAS fold J4N44_08460 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N44_08485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_08485 PF03466 LysR substrate binding domain J4N44_08490 PF07690 Major Facilitator Superfamily J4N44_08500 PF01794 Ferric reductase like transmembrane component J4N44_08505 PF00174 Oxidoreductase molybdopterin binding domain J4N44_08545 PF00392 Bacterial regulatory proteins, gntR family J4N44_08545 PF07729 FCD domain J4N44_08550 PF01810 LysE type translocator J4N44_08565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_08565 PF03466 LysR substrate binding domain J4N44_08570 PF00082 Subtilase family J4N44_08570 PF04151 Bacterial pre-peptidase C-terminal domain J4N44_08570 PF05922 Peptidase inhibitor I9 J4N44_08575 PF03150 Di-haem cytochrome c peroxidase J4N44_08575 PF00034 Cytochrome c J4N44_08580 PF13840 ACT domain J4N44_08580 PF00696 Amino acid kinase family J4N44_08585 PF06339 Ectoine synthase J4N44_08590 PF00202 Aminotransferase class-III J4N44_08595 PF00583 Acetyltransferase (GNAT) family J4N44_08600 PF02028 BCCT, betaine/carnitine/choline family transporter J4N44_08610 PF00571 CBS domain J4N44_08615 PF01554 MatE J4N44_08630 PF00884 Sulfatase J4N44_08650 PF12833 Helix-turn-helix domain J4N44_08650 PF02311 AraC-like ligand binding domain J4N44_08670 PF01235 Sodium:alanine symporter family J4N44_08675 PF00171 Aldehyde dehydrogenase family J4N44_08680 PF00158 Sigma-54 interaction domain J4N44_08680 PF02954 Bacterial regulatory protein, Fis family J4N44_08680 PF01590 GAF domain J4N44_08715 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase J4N44_08720 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase J4N44_08725 PF04223 Citrate lyase, alpha subunit (CitF) J4N44_08730 PF03328 HpcH/HpaI aldolase/citrate lyase family J4N44_08735 PF06857 Malonate decarboxylase delta subunit (MdcD) J4N44_08740 PF08218 Citrate lyase ligase C-terminal domain J4N44_08745 PF03390 2-hydroxycarboxylate transporter family J4N44_08750 PF04277 Oxaloacetate decarboxylase, gamma chain J4N44_08755 PF02436 Conserved carboxylase domain J4N44_08755 PF00364 Biotin-requiring enzyme J4N44_08755 PF00682 HMGL-like J4N44_08760 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit J4N44_08765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_08765 PF17203 Single cache domain 3 J4N44_08770 PF00072 Response regulator receiver domain J4N44_08770 PF12431 Transcriptional regulator J4N44_08795 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N44_08810 PF00293 NUDIX domain J4N44_08855 PF14497 Glutathione S-transferase, C-terminal domain J4N44_08855 PF02798 Glutathione S-transferase, N-terminal domain J4N44_08865 PF04209 homogentisate 1,2-dioxygenase J4N44_08870 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N44_08880 PF07687 Peptidase dimerisation domain J4N44_08880 PF01546 Peptidase family M20/M25/M40 J4N44_08885 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N44_08890 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_08895 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N44_08895 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_08900 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N44_08900 PF00005 ABC transporter J4N44_08905 PF00005 ABC transporter J4N44_08905 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N44_08915 PF12561 ToxR activated gene A lipoprotein domain J4N44_08915 PF00041 Fibronectin type III domain J4N44_08920 PF01752 Collagenase J4N44_08920 PF08453 Peptidase family M9 N-terminal J4N44_08935 PF08521 Two-component sensor kinase N-terminal J4N44_08935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_08935 PF00512 His Kinase A (phospho-acceptor) domain J4N44_08940 PF00072 Response regulator receiver domain J4N44_08940 PF00486 Transcriptional regulatory protein, C terminal J4N44_08950 PF00873 AcrB/AcrD/AcrF family J4N44_08955 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N44_08955 PF00529 HlyD membrane-fusion protein of T1SS J4N44_08975 PF01048 Phosphorylase superfamily J4N44_08980 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_08985 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_08990 PF08402 TOBE domain J4N44_08990 PF00005 ABC transporter J4N44_08995 PF00701 Dihydrodipicolinate synthetase family J4N44_09000 PF02423 Ornithine cyclodeaminase/mu-crystallin family J4N44_09010 PF01266 FAD dependent oxidoreductase J4N44_09015 PF05544 Proline racemase J4N44_09020 PF00171 Aldehyde dehydrogenase family J4N44_09025 PF00392 Bacterial regulatory proteins, gntR family J4N44_09035 PF00990 Diguanylate cyclase, GGDEF domain J4N44_09035 PF00072 Response regulator receiver domain J4N44_09040 PF05971 RNA methyltransferase J4N44_09045 PF01863 Protein of unknown function DUF45 J4N44_09070 PF03466 LysR substrate binding domain J4N44_09070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_09075 PF07690 Major Facilitator Superfamily J4N44_09120 PF00005 ABC transporter J4N44_09125 PF01032 FecCD transport family J4N44_09130 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family J4N44_09140 PF00300 Histidine phosphatase superfamily (branch 1) J4N44_09145 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase J4N44_09150 PF02654 Cobalamin-5-phosphate synthase J4N44_09155 PF02277 Phosphoribosyltransferase J4N44_09160 PF01613 Flavin reductase like domain J4N44_09165 PF13460 NAD(P)H-binding J4N44_09170 PF00375 Sodium:dicarboxylate symporter family J4N44_09180 PF08411 Exonuclease C-terminal J4N44_09180 PF00929 Exonuclease J4N44_09185 PF03788 LrgA family J4N44_09190 PF04172 LrgB-like family J4N44_09195 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J4N44_09195 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region J4N44_09200 PF02222 ATP-grasp domain J4N44_09205 PF05724 Thiopurine S-methyltransferase (TPMT) J4N44_09215 PF00216 Bacterial DNA-binding protein J4N44_09255 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain J4N44_09255 PF01588 Putative tRNA binding domain J4N44_09255 PF03147 Ferredoxin-fold anticodon binding domain J4N44_09255 PF03484 tRNA synthetase B5 domain J4N44_09255 PF03483 B3/4 domain J4N44_09260 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain J4N44_09260 PF01409 tRNA synthetases class II core domain (F) J4N44_09265 PF17158 Membrane-associated sensor, integral membrane domain J4N44_09265 PF00990 Diguanylate cyclase, GGDEF domain J4N44_09300 PF01906 Putative heavy-metal-binding J4N44_09305 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N44_09310 PF01042 Endoribonuclease L-PSP J4N44_09315 PF00453 Ribosomal protein L20 J4N44_09320 PF01632 Ribosomal protein L35 J4N44_09325 PF00707 Translation initiation factor IF-3, C-terminal domain J4N44_09325 PF05198 Translation initiation factor IF-3, N-terminal domain J4N44_09330 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J4N44_09330 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J4N44_09330 PF03129 Anticodon binding domain J4N44_09330 PF02824 TGS domain J4N44_09345 PF00392 Bacterial regulatory proteins, gntR family J4N44_09345 PF07702 UTRA domain J4N44_09350 PF01979 Amidohydrolase family J4N44_09355 PF00491 Arginase family J4N44_09360 PF01175 Urocanase Rossmann-like domain J4N44_09360 PF17392 Urocanase C-terminal domain J4N44_09360 PF17391 Urocanase N-terminal domain J4N44_09365 PF00221 Aromatic amino acid lyase J4N44_09380 PF02913 FAD linked oxidases, C-terminal domain J4N44_09380 PF01565 FAD binding domain J4N44_09380 PF13183 4Fe-4S dicluster domain J4N44_09395 PF05736 OprF membrane domain J4N44_09395 PF00691 OmpA family J4N44_09415 PF01259 SAICAR synthetase J4N44_09445 PF00958 GMP synthase C terminal domain J4N44_09445 PF00117 Glutamine amidotransferase class-I J4N44_09445 PF03352 Methyladenine glycosylase J4N44_09445 PF13302 Acetyltransferase (GNAT) domain J4N44_09445 PF13673 Acetyltransferase (GNAT) domain J4N44_09610 PF03575 Peptidase family S51 J4N44_09705 PF05016 ParE toxin of type II toxin-antitoxin system, parDE J4N44_09730 PF13614 AAA domain J4N44_10030 PF00877 NlpC/P60 family J4N44_10345 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J4N44_10345 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N44_10420 PF00877 NlpC/P60 family J4N44_10425 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J4N44_10425 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N44_10550 PF13495 Phage integrase, N-terminal SAM-like domain J4N44_10550 PF00589 Phage integrase family J4N44_10565 PF13302 Acetyltransferase (GNAT) domain J4N44_10570 PF18024 Helix-turn-helix domain J4N44_10570 PF00158 Sigma-54 interaction domain J4N44_10575 PF05128 Domain of unknown function (DUF697) J4N44_10580 PF04317 YcjX-like family, DUF463 J4N44_10595 PF04715 Anthranilate synthase component I, N terminal region J4N44_10595 PF00425 chorismate binding enzyme J4N44_10600 PF00512 His Kinase A (phospho-acceptor) domain J4N44_10600 PF00072 Response regulator receiver domain J4N44_10600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_10600 PF09308 LuxQ, periplasmic J4N44_10610 PF00293 NUDIX domain J4N44_10615 PF03222 Tryptophan/tyrosine permease family J4N44_10620 PF03313 Serine dehydratase alpha chain J4N44_10620 PF03315 Serine dehydratase beta chain J4N44_10625 PF03707 Bacterial signalling protein N terminal repeat J4N44_10625 PF00563 EAL domain J4N44_10625 PF13188 PAS domain J4N44_10625 PF00990 Diguanylate cyclase, GGDEF domain J4N44_10640 PF00196 Bacterial regulatory proteins, luxR family J4N44_10640 PF00072 Response regulator receiver domain J4N44_10645 PF01242 6-pyruvoyl tetrahydropterin synthase J4N44_10650 PF00672 HAMP domain J4N44_10650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N44_10650 PF17200 Single Cache domain 2 J4N44_10655 PF00152 tRNA synthetases class II (D, K and N) J4N44_10655 PF01336 OB-fold nucleic acid binding domain J4N44_10670 PF00155 Aminotransferase class I and II J4N44_10670 PF00392 Bacterial regulatory proteins, gntR family J4N44_10685 PF01966 HD domain J4N44_10685 PF00672 HAMP domain J4N44_10690 PF00155 Aminotransferase class I and II J4N44_10710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N44_10710 PF00672 HAMP domain J4N44_10715 PF02028 BCCT, betaine/carnitine/choline family transporter J4N44_10720 PF01047 MarR family J4N44_10725 PF00196 Bacterial regulatory proteins, luxR family J4N44_10725 PF00072 Response regulator receiver domain J4N44_10730 PF07730 Histidine kinase J4N44_10730 PF17200 Single Cache domain 2 J4N44_10735 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J4N44_10745 PF03480 Bacterial extracellular solute-binding protein, family 7 J4N44_10760 PF00753 Metallo-beta-lactamase superfamily J4N44_10765 PF05951 Bacterial protein of unknown function (DUF882) J4N44_10770 PF01471 Putative peptidoglycan binding domain J4N44_10770 PF03734 L,D-transpeptidase catalytic domain J4N44_10795 PF00925 GTP cyclohydrolase II J4N44_10805 PF03918 Cytochrome C biogenesis protein J4N44_10810 PF08534 Redoxin J4N44_10815 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal J4N44_10815 PF01578 Cytochrome C assembly protein J4N44_10820 PF03916 Polysulphide reductase, NrfD J4N44_10825 PF13247 4Fe-4S dicluster domain J4N44_10835 PF02335 Cytochrome c552 J4N44_10850 PF03989 DNA gyrase C-terminal domain, beta-propeller J4N44_10850 PF00521 DNA gyrase/topoisomerase IV, subunit A J4N44_10860 PF00317 Ribonucleotide reductase, all-alpha domain J4N44_10860 PF02867 Ribonucleotide reductase, barrel domain J4N44_10860 PF03477 ATP cone domain J4N44_10865 PF00268 Ribonucleotide reductase, small chain J4N44_10875 PF02464 Competence-damaged protein J4N44_10875 PF00994 Probable molybdopterin binding domain J4N44_10890 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain J4N44_10895 PF16653 Saccharopine dehydrogenase C-terminal domain J4N44_10895 PF03435 Saccharopine dehydrogenase NADP binding domain J4N44_10900 PF00202 Aminotransferase class-III J4N44_10925 PF01066 CDP-alcohol phosphatidyltransferase J4N44_10930 PF02151 UvrB/uvrC motif J4N44_10930 PF08459 UvrC Helix-hairpin-helix N-terminal J4N44_10930 PF01541 GIY-YIG catalytic domain J4N44_10935 PF00072 Response regulator receiver domain J4N44_10935 PF00196 Bacterial regulatory proteins, luxR family J4N44_10940 PF00136 DNA polymerase family B J4N44_10940 PF03104 DNA polymerase family B, exonuclease domain J4N44_10950 PF01132 Elongation factor P (EF-P) OB domain J4N44_10950 PF08207 Elongation factor P (EF-P) KOW-like domain J4N44_10950 PF09285 Elongation factor P, C-terminal J4N44_10955 PF04269 Protein of unknown function, DUF440 J4N44_10960 PF00849 RNA pseudouridylate synthase J4N44_10960 PF01479 S4 domain J4N44_10970 PF01300 Telomere recombination J4N44_10975 PF02811 PHP domain J4N44_10980 PF08056 Tryptophan operon leader peptide J4N44_10985 PF04715 Anthranilate synthase component I, N terminal region J4N44_10985 PF00425 chorismate binding enzyme J4N44_10990 PF00117 Glutamine amidotransferase class-I J4N44_10995 PF02885 Glycosyl transferase family, helical bundle domain J4N44_10995 PF00591 Glycosyl transferase family, a/b domain J4N44_11000 PF00218 Indole-3-glycerol phosphate synthase J4N44_11000 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase J4N44_11005 PF00291 Pyridoxal-phosphate dependent enzyme J4N44_11010 PF00290 Tryptophan synthase alpha chain J4N44_11015 PF00375 Sodium:dicarboxylate symporter family J4N44_11020 PF17327 Acyl homoserine lactone synthase J4N44_11025 PF00072 Response regulator receiver domain J4N44_11025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_11035 PF04279 Intracellular septation protein A J4N44_11040 PF03061 Thioesterase superfamily J4N44_11045 PF03795 YCII-related domain J4N44_11055 PF01717 Cobalamin-independent synthase, Catalytic domain J4N44_11055 PF08267 Cobalamin-independent synthase, N-terminal domain J4N44_11060 PF03466 LysR substrate binding domain J4N44_11060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_11075 PF00498 FHA domain J4N44_11075 PF00990 Diguanylate cyclase, GGDEF domain J4N44_11075 PF00563 EAL domain J4N44_11080 PF11842 Domain of unknown function (DUF3362) J4N44_11080 PF04055 Radical SAM superfamily J4N44_11080 PF08497 Radical SAM N-terminal J4N44_11100 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4N44_11100 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N44_11105 PF00375 Sodium:dicarboxylate symporter family J4N44_11110 PF01042 Endoribonuclease L-PSP J4N44_11115 PF13309 HTH domain J4N44_11115 PF08348 YheO-like PAS domain J4N44_11120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N44_11120 PF00672 HAMP domain J4N44_11130 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase J4N44_11135 PF00535 Glycosyl transferase family 2 J4N44_11140 PF00072 Response regulator receiver domain J4N44_11140 PF00486 Transcriptional regulatory protein, C terminal J4N44_11145 PF00512 His Kinase A (phospho-acceptor) domain J4N44_11145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_11145 PF00672 HAMP domain J4N44_11165 PF03466 LysR substrate binding domain J4N44_11165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_11170 PF00529 HlyD membrane-fusion protein of T1SS J4N44_11170 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N44_11180 PF01047 MarR family J4N44_11195 PF08267 Cobalamin-independent synthase, N-terminal domain J4N44_11195 PF01717 Cobalamin-independent synthase, Catalytic domain J4N44_11225 PF02687 FtsX-like permease family J4N44_11225 PF00005 ABC transporter J4N44_11225 PF12704 MacB-like periplasmic core domain J4N44_11230 PF00005 ABC transporter J4N44_11230 PF02687 FtsX-like permease family J4N44_11230 PF12704 MacB-like periplasmic core domain J4N44_11235 PF02687 FtsX-like permease family J4N44_11235 PF12704 MacB-like periplasmic core domain J4N44_11255 PF00440 Bacterial regulatory proteins, tetR family J4N44_11260 PF00583 Acetyltransferase (GNAT) family J4N44_11285 PF00085 Thioredoxin J4N44_11290 PF11412 Disulphide bond corrector protein DsbC J4N44_11290 PF02683 Cytochrome C biogenesis protein transmembrane region J4N44_11300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_11300 PF03466 LysR substrate binding domain J4N44_11305 PF04403 Paraquat-inducible protein A J4N44_11310 PF02470 MlaD protein J4N44_11315 PF03886 ABC-type transport auxiliary lipoprotein component J4N44_11370 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N44_11375 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family J4N44_11380 PF18073 Rubredoxin metal binding domain J4N44_11385 PF06305 Lipopolysaccharide assembly protein A domain J4N44_11390 PF00216 Bacterial DNA-binding protein J4N44_11395 PF00575 S1 RNA binding domain J4N44_11400 PF02224 Cytidylate kinase J4N44_11405 PF08496 Peptidase family S49 N-terminal J4N44_11405 PF01343 Peptidase family S49 J4N44_11410 PF00106 short chain dehydrogenase J4N44_11425 PF07733 Bacterial DNA polymerase III alpha NTPase domain J4N44_11425 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J4N44_11425 PF14579 Helix-hairpin-helix motif J4N44_11425 PF02811 PHP domain J4N44_11425 PF01336 OB-fold nucleic acid binding domain J4N44_11430 PF00072 Response regulator receiver domain J4N44_11430 PF01584 CheW-like domain J4N44_11435 PF00480 ROK family J4N44_11440 PF00224 Pyruvate kinase, barrel domain J4N44_11440 PF02887 Pyruvate kinase, alpha/beta domain J4N44_11445 PF01734 Patatin-like phospholipase J4N44_11460 PF00209 Sodium:neurotransmitter symporter family J4N44_11475 PF00367 phosphotransferase system, EIIB J4N44_11475 PF02378 Phosphotransferase system, EIIC J4N44_11480 PF01026 TatD related DNase J4N44_11485 PF09115 DNA polymerase III, delta subunit, C terminal J4N44_11490 PF02223 Thymidylate kinase J4N44_11495 PF02618 YceG-like family J4N44_11500 PF01063 Amino-transferase class IV J4N44_11505 PF02801 Beta-ketoacyl synthase, C-terminal domain J4N44_11505 PF00109 Beta-ketoacyl synthase, N-terminal domain J4N44_11510 PF00550 Phosphopantetheine attachment site J4N44_11520 PF00698 Acyl transferase domain J4N44_11525 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J4N44_11525 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J4N44_11530 PF02504 Fatty acid synthesis protein J4N44_11535 PF01783 Ribosomal L32p protein family J4N44_11540 PF02620 Large ribosomal RNA subunit accumulation protein YceD J4N44_11545 PF02545 Maf-like protein J4N44_11550 PF00849 RNA pseudouridylate synthase J4N44_11550 PF01479 S4 domain J4N44_11560 PF12111 Polyribonucleotide phosphorylase C terminal J4N44_11560 PF10150 Ribonuclease E/G family J4N44_11560 PF00575 S1 RNA binding domain J4N44_11565 PF01740 STAS domain J4N44_11565 PF00916 Sulfate permease family J4N44_11570 PF01451 Low molecular weight phosphotyrosine protein phosphatase J4N44_11575 PF12557 Cob(I)alamin adenosyltransferase N terminal J4N44_11575 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP J4N44_11585 PF00485 Phosphoribulokinase / Uridine kinase family J4N44_11590 PF10609 NUBPL iron-transfer P-loop NTPase J4N44_11595 PF09334 tRNA synthetases class I (M) J4N44_11595 PF01588 Putative tRNA binding domain J4N44_11605 PF07840 FadR C-terminal domain J4N44_11605 PF00392 Bacterial regulatory proteins, gntR family J4N44_11610 PF06450 Bacterial Na+/H+ antiporter B (NhaB) J4N44_11615 PF02600 Disulfide bond formation protein DsbB J4N44_11620 PF07516 SecA Wing and Scaffold domain J4N44_11620 PF07517 SecA DEAD-like domain J4N44_11620 PF02810 SEC-C motif J4N44_11620 PF01043 SecA preprotein cross-linking domain J4N44_11625 PF01207 Dihydrouridine synthase (Dus) J4N44_11630 PF00990 Diguanylate cyclase, GGDEF domain J4N44_11635 PF00128 Alpha amylase, catalytic domain J4N44_11635 PF02903 Alpha amylase, N-terminal ig-like domain J4N44_11640 PF00005 ABC transporter J4N44_11645 PF02653 Branched-chain amino acid transport system / permease component J4N44_11655 PF04217 Protein of unknown function, DUF412 J4N44_11660 PF00871 Acetokinase family J4N44_11665 PF07085 DRTGG domain J4N44_11665 PF01515 Phosphate acetyl/butaryl transferase J4N44_11670 PF13194 Domain of unknown function (DUF4010) J4N44_11675 PF13409 Glutathione S-transferase, N-terminal domain J4N44_11680 PF00005 ABC transporter J4N44_11680 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N44_11685 PF00005 ABC transporter J4N44_11685 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N44_11690 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N44_11690 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_11695 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_11700 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N44_11705 PF02391 MoaE protein J4N44_11710 PF02597 ThiS family J4N44_11715 PF01967 MoaC family J4N44_11720 PF00994 Probable molybdopterin binding domain J4N44_11725 PF06463 Molybdenum Cofactor Synthesis C J4N44_11725 PF04055 Radical SAM superfamily J4N44_11730 PF01933 Uncharacterised protein family UPF0052 J4N44_11735 PF01627 Hpt domain J4N44_11740 PF02954 Bacterial regulatory protein, Fis family J4N44_11740 PF00072 Response regulator receiver domain J4N44_11740 PF00158 Sigma-54 interaction domain J4N44_11745 PF02151 UvrB/uvrC motif J4N44_11745 PF00271 Helicase conserved C-terminal domain J4N44_11745 PF04851 Type III restriction enzyme, res subunit J4N44_11745 PF12344 Ultra-violet resistance protein B J4N44_11745 PF17757 UvrB interaction domain J4N44_11755 PF01228 Glycine radical J4N44_11755 PF02901 Pyruvate formate lyase-like J4N44_11760 PF02508 Rnf-Nqr subunit, membrane protein J4N44_11765 PF04060 Putative Fe-S cluster J4N44_11770 PF13375 RnfC Barrel sandwich hybrid domain J4N44_11770 PF12838 4Fe-4S dicluster domain J4N44_11770 PF10531 SLBB domain J4N44_11770 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit J4N44_11775 PF03116 NQR2, RnfD, RnfE family J4N44_11780 PF04205 FMN-binding domain J4N44_11785 PF02508 Rnf-Nqr subunit, membrane protein J4N44_11790 PF10576 Iron-sulfur binding domain of endonuclease III J4N44_11790 PF00633 Helix-hairpin-helix motif J4N44_11790 PF00730 HhH-GPD superfamily base excision DNA repair protein J4N44_11795 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N44_11800 PF10952 Protein of unknown function (DUF2753) J4N44_11805 PF18393 MotY N-terminal domain J4N44_11805 PF00691 OmpA family J4N44_11810 PF00929 Exonuclease J4N44_11815 PF13726 Na+-H+ antiporter family J4N44_11815 PF03553 Na+/H+ antiporter family J4N44_11825 PF00462 Glutaredoxin J4N44_11830 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain J4N44_11830 PF02777 Iron/manganese superoxide dismutases, C-terminal domain J4N44_11845 PF00465 Iron-containing alcohol dehydrogenase J4N44_11845 PF00171 Aldehyde dehydrogenase family J4N44_11850 PF01914 MarC family integral membrane protein J4N44_11855 PF00027 Cyclic nucleotide-binding domain J4N44_11855 PF00520 Ion transport protein J4N44_11860 PF01118 Semialdehyde dehydrogenase, NAD binding domain J4N44_11860 PF02774 Semialdehyde dehydrogenase, dimerisation domain J4N44_11865 PF03553 Na+/H+ antiporter family J4N44_11880 PF04245 37-kD nucleoid-associated bacterial protein J4N44_11885 PF07208 Protein of unknown function (DUF1414) J4N44_11890 PF00884 Sulfatase J4N44_11890 PF11893 Domain of unknown function (DUF3413) J4N44_11905 PF00850 Histone deacetylase domain J4N44_11910 PF00106 short chain dehydrogenase J4N44_11920 PF01751 Toprim domain J4N44_11920 PF01131 DNA topoisomerase J4N44_11925 PF00881 Nitroreductase family J4N44_11930 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J4N44_11930 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N44_11935 PF01343 Peptidase family S49 J4N44_11940 PF00710 Asparaginase, N-terminal J4N44_11940 PF17763 Glutaminase/Asparaginase C-terminal domain J4N44_11945 PF07023 Protein of unknown function (DUF1315) J4N44_11955 PF01641 SelR domain J4N44_11960 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J4N44_11960 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J4N44_11965 PF01263 Aldose 1-epimerase J4N44_11970 PF01156 Inosine-uridine preferring nucleoside hydrolase J4N44_11975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N44_11975 PF08447 PAS fold J4N44_11975 PF13426 PAS domain J4N44_11980 PF13847 Methyltransferase domain J4N44_11995 PF02028 BCCT, betaine/carnitine/choline family transporter J4N44_12000 PF00245 Alkaline phosphatase J4N44_12010 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N44_12015 PF03992 Antibiotic biosynthesis monooxygenase J4N44_12020 PF00924 Mechanosensitive ion channel J4N44_12020 PF05552 Conserved TM helix J4N44_12025 PF04226 Transglycosylase associated protein J4N44_12035 PF03692 Putative zinc- or iron-chelating domain J4N44_12040 PF03692 Putative zinc- or iron-chelating domain J4N44_12055 PF01042 Endoribonuclease L-PSP J4N44_12065 PF00230 Major intrinsic protein J4N44_12070 PF13662 Toprim domain J4N44_12070 PF02132 RecR protein J4N44_12075 PF02575 YbaB/EbfC DNA-binding family J4N44_12080 PF12169 DNA polymerase III subunits gamma and tau domain III J4N44_12080 PF12170 DNA polymerase III tau subunit V interacting with alpha J4N44_12085 PF00156 Phosphoribosyl transferase domain J4N44_12090 PF04304 Protein of unknown function (DUF454) J4N44_12095 PF00072 Response regulator receiver domain J4N44_12100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_12100 PF03466 LysR substrate binding domain J4N44_12105 PF00156 Phosphoribosyl transferase domain J4N44_12110 PF02674 Colicin V production protein J4N44_12115 PF05036 Sporulation related domain J4N44_12120 PF02875 Mur ligase family, glutamate ligase domain J4N44_12120 PF08245 Mur ligase middle domain J4N44_12125 PF01039 Carboxyl transferase domain J4N44_12125 PF17848 Acetyl-coA carboxylase zinc finger domain J4N44_12130 PF01416 tRNA pseudouridine synthase J4N44_12140 PF02774 Semialdehyde dehydrogenase, dimerisation domain J4N44_12140 PF01118 Semialdehyde dehydrogenase, NAD binding domain J4N44_12145 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J4N44_12145 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N44_12145 PF11890 Domain of unknown function (DUF3410) J4N44_12150 PF02801 Beta-ketoacyl synthase, C-terminal domain J4N44_12150 PF00109 Beta-ketoacyl synthase, N-terminal domain J4N44_12155 PF05430 S-adenosyl-L-methionine-dependent methyltransferase J4N44_12155 PF01266 FAD dependent oxidoreductase J4N44_12165 PF08891 YfcL protein J4N44_12170 PF04315 Elongation factor P hydroxylase J4N44_12175 PF03458 UPF0126 domain J4N44_12180 PF01264 Chorismate synthase J4N44_12185 PF05175 Methyltransferase small domain J4N44_12190 PF01713 Smr domain J4N44_12195 PF00300 Histidine phosphatase superfamily (branch 1) J4N44_12200 PF05193 Peptidase M16 inactive domain J4N44_12200 PF00675 Insulinase (Peptidase family M16) J4N44_12200 PF16187 Middle or third domain of peptidase_M16 J4N44_12210 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J4N44_12210 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J4N44_12210 PF00378 Enoyl-CoA hydratase/isomerase J4N44_12215 PF00108 Thiolase, N-terminal domain J4N44_12215 PF02803 Thiolase, C-terminal domain J4N44_12220 PF08281 Sigma-70, region 4 J4N44_12220 PF04542 Sigma-70 region 2 J4N44_12230 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J4N44_12235 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J4N44_12240 PF04333 MlaA lipoprotein J4N44_12245 PF03918 Cytochrome C biogenesis protein J4N44_12250 PF03918 Cytochrome C biogenesis protein J4N44_12255 PF08534 Redoxin J4N44_12260 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal J4N44_12260 PF01578 Cytochrome C assembly protein J4N44_12265 PF03100 CcmE J4N44_12275 PF01578 Cytochrome C assembly protein J4N44_12280 PF03379 CcmB protein J4N44_12285 PF00005 ABC transporter J4N44_12295 PF01584 CheW-like domain J4N44_12305 PF13614 AAA domain J4N44_12310 PF00072 Response regulator receiver domain J4N44_12310 PF01339 CheB methylesterase J4N44_12315 PF01627 Hpt domain J4N44_12315 PF01584 CheW-like domain J4N44_12315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_12315 PF00072 Response regulator receiver domain J4N44_12315 PF02895 Signal transducing histidine kinase, homodimeric domain J4N44_12320 PF04344 Chemotaxis phosphatase, CheZ J4N44_12325 PF00072 Response regulator receiver domain J4N44_12330 PF04539 Sigma-70 region 3 J4N44_12330 PF04542 Sigma-70 region 2 J4N44_12330 PF04545 Sigma-70, region 4 J4N44_12335 PF10609 NUBPL iron-transfer P-loop NTPase J4N44_12340 PF00448 SRP54-type protein, GTPase domain J4N44_12345 PF00771 FHIPEP family J4N44_12350 PF01312 FlhB HrpN YscU SpaS Family J4N44_12355 PF01311 Bacterial export proteins, family 1 J4N44_12360 PF01313 Bacterial export proteins, family 3 J4N44_12365 PF00813 FliP family J4N44_12370 PF04347 Flagellar biosynthesis protein, FliO J4N44_12375 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J4N44_12380 PF02154 Flagellar motor switch protein FliM J4N44_12380 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J4N44_12405 PF18269 T3SS EscN ATPase C-terminal domain J4N44_12405 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N44_12415 PF14841 FliG middle domain J4N44_12415 PF14842 FliG N-terminal domain J4N44_12415 PF01706 FliG C-terminal domain J4N44_12420 PF08345 Flagellar M-ring protein C-terminal J4N44_12420 PF01514 Secretory protein of YscJ/FliF family J4N44_12425 PF02049 Flagellar hook-basal body complex protein FliE J4N44_12430 PF00158 Sigma-54 interaction domain J4N44_12430 PF00072 Response regulator receiver domain J4N44_12430 PF02954 Bacterial regulatory protein, Fis family J4N44_12435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_12435 PF13188 PAS domain J4N44_12435 PF00512 His Kinase A (phospho-acceptor) domain J4N44_12440 PF06490 Flagellar regulatory protein FleQ J4N44_12440 PF02954 Bacterial regulatory protein, Fis family J4N44_12440 PF00158 Sigma-54 interaction domain J4N44_12445 PF02561 Flagellar protein FliS J4N44_12455 PF02465 Flagellar hook-associated protein 2 N-terminus J4N44_12455 PF07195 Flagellar hook-associated protein 2 C-terminus J4N44_12455 PF07196 Flagellin hook IN motif J4N44_12460 PF03646 FlaG protein J4N44_12465 PF00700 Bacterial flagellin C-terminal helical region J4N44_12465 PF07196 Flagellin hook IN motif J4N44_12465 PF00669 Bacterial flagellin N-terminal helical region J4N44_12475 PF00700 Bacterial flagellin C-terminal helical region J4N44_12475 PF07196 Flagellin hook IN motif J4N44_12475 PF00669 Bacterial flagellin N-terminal helical region J4N44_12485 PF02056 Family 4 glycosyl hydrolase J4N44_12485 PF11975 Family 4 glycosyl hydrolase C-terminal domain J4N44_12490 PF12833 Helix-turn-helix domain J4N44_12495 PF04261 Dyp-type peroxidase family J4N44_12500 PF11143 Protein of unknown function (DUF2919) J4N44_12520 PF03960 ArsC family J4N44_12525 PF01546 Peptidase family M20/M25/M40 J4N44_12525 PF07687 Peptidase dimerisation domain J4N44_12540 PF06804 NlpB/DapX lipoprotein J4N44_12545 PF00701 Dihydrodipicolinate synthetase family J4N44_12550 PF01842 ACT domain J4N44_12555 PF00578 AhpC/TSA family J4N44_12560 PF01594 AI-2E family transporter J4N44_12570 PF13181 Tetratricopeptide repeat J4N44_12570 PF01435 Peptidase family M48 J4N44_12575 PF03960 ArsC family J4N44_12580 PF03358 NADPH-dependent FMN reductase J4N44_12595 PF00860 Permease family J4N44_12605 PF02769 AIR synthase related protein, C-terminal domain J4N44_12605 PF00586 AIR synthase related protein, N-terminal domain J4N44_12610 PF00551 Formyl transferase J4N44_12615 PF13230 Glutamine amidotransferases class-II J4N44_12620 PF13580 SIS domain J4N44_12625 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J4N44_12625 PF02770 Acyl-CoA dehydrogenase, middle domain J4N44_12625 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J4N44_12625 PF09317 Domain of unknown function (DUF1974) J4N44_12645 PF00929 Exonuclease J4N44_12650 PF00075 RNase H J4N44_12655 PF08241 Methyltransferase domain J4N44_12660 PF16123 Hydroxyacylglutathione hydrolase C-terminus J4N44_12665 PF01464 Transglycosylase SLT domain J4N44_12665 PF01476 LysM domain J4N44_12680 PF00543 Nitrogen regulatory protein P-II J4N44_12685 PF00034 Cytochrome c J4N44_12690 PF11734 TilS substrate C-terminal domain J4N44_12690 PF09179 TilS substrate binding domain J4N44_12690 PF01171 PP-loop family J4N44_12695 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit J4N44_12700 PF01336 OB-fold nucleic acid binding domain J4N44_12700 PF02811 PHP domain J4N44_12700 PF14579 Helix-hairpin-helix motif J4N44_12700 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J4N44_12700 PF07733 Bacterial DNA polymerase III alpha NTPase domain J4N44_12705 PF01351 Ribonuclease HII J4N44_12710 PF02684 Lipid-A-disaccharide synthetase J4N44_12715 PF00132 Bacterial transferase hexapeptide (six repeats) J4N44_12715 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 J4N44_12720 PF07977 FabA-like domain J4N44_12725 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD J4N44_12725 PF00132 Bacterial transferase hexapeptide (six repeats) J4N44_12730 PF03938 Outer membrane protein (OmpH-like) J4N44_12735 PF01103 Surface antigen J4N44_12735 PF07244 Surface antigen variable number repeat J4N44_12740 PF02163 Peptidase family M50 J4N44_12740 PF17820 PDZ domain J4N44_12745 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain J4N44_12745 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase J4N44_12745 PF13288 DXP reductoisomerase C-terminal domain J4N44_12755 PF01255 Putative undecaprenyl diphosphate synthase J4N44_12760 PF01765 Ribosome recycling factor J4N44_12765 PF00696 Amino acid kinase family J4N44_12770 PF00889 Elongation factor TS J4N44_12775 PF00318 Ribosomal protein S2 J4N44_12780 PF00557 Metallopeptidase family M24 J4N44_12785 PF01842 ACT domain J4N44_12785 PF08335 GlnD PII-uridylyltransferase J4N44_12785 PF01966 HD domain J4N44_12785 PF01909 Nucleotidyltransferase domain J4N44_12790 PF11944 Protein of unknown function (DUF3461) J4N44_12795 PF00849 RNA pseudouridylate synthase J4N44_12800 PF04287 tRNA pseudouridine synthase C J4N44_12825 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 J4N44_12835 PF01370 NAD dependent epimerase/dehydratase family J4N44_12860 PF03806 AbgT putative transporter family J4N44_12865 PF00444 Ribosomal protein L36 J4N44_12870 PF01197 Ribosomal protein L31 J4N44_12875 PF18389 TrmO C-terminal domain J4N44_12875 PF01980 tRNA-methyltransferase O J4N44_12880 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J4N44_12880 PF04073 Aminoacyl-tRNA editing domain J4N44_12880 PF03129 Anticodon binding domain J4N44_12890 PF06786 Uncharacterised protein family (UPF0253) J4N44_12900 PF00209 Sodium:neurotransmitter symporter family J4N44_12905 PF00041 Fibronectin type III domain J4N44_12905 PF00704 Glycosyl hydrolases family 18 J4N44_12915 PF01272 Transcription elongation factor, GreA/GreB, C-term J4N44_12915 PF03449 Transcription elongation factor, N-terminal J4N44_12920 PF09382 RQC domain J4N44_12920 PF16124 RecQ zinc-binding J4N44_12920 PF00271 Helicase conserved C-terminal domain J4N44_12920 PF00270 DEAD/DEAH box helicase J4N44_12920 PF00570 HRDC domain J4N44_12925 PF00817 impB/mucB/samB family J4N44_12925 PF11799 impB/mucB/samB family C-terminal domain J4N44_12925 PF11798 IMS family HHH motif J4N44_12930 PF00990 Diguanylate cyclase, GGDEF domain J4N44_12930 PF00072 Response regulator receiver domain J4N44_12940 PF02424 ApbE family J4N44_12945 PF00175 Oxidoreductase NAD-binding domain J4N44_12945 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N44_12945 PF00970 Oxidoreductase FAD-binding domain J4N44_12950 PF02508 Rnf-Nqr subunit, membrane protein J4N44_12955 PF02508 Rnf-Nqr subunit, membrane protein J4N44_12960 PF04205 FMN-binding domain J4N44_12965 PF03116 NQR2, RnfD, RnfE family J4N44_12970 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) J4N44_12970 PF11973 NQRA C-terminal domain J4N44_12975 PF01722 BolA-like protein J4N44_12980 PF05175 Methyltransferase small domain J4N44_12990 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J4N44_12995 PF07690 Major Facilitator Superfamily J4N44_13005 PF04542 Sigma-70 region 2 J4N44_13005 PF04545 Sigma-70, region 4 J4N44_13020 PF03502 Nucleoside-specific channel-forming protein, Tsx J4N44_13025 PF02558 Ketopantoate reductase PanE/ApbA J4N44_13025 PF08546 Ketopantoate reductase PanE/ApbA C terminal J4N44_13030 PF01965 DJ-1/PfpI family J4N44_13035 PF00266 Aminotransferase class-V J4N44_13040 PF02657 Fe-S metabolism associated domain J4N44_13045 PF00899 ThiF family J4N44_13050 PF06725 3D domain J4N44_13050 PF03562 MltA specific insert domain J4N44_13060 PF00696 Amino acid kinase family J4N44_13060 PF00583 Acetyltransferase (GNAT) family J4N44_13080 PF13538 UvrD-like helicase C-terminal domain J4N44_13085 PF00580 UvrD/REP helicase N-terminal domain J4N44_13085 PF13361 UvrD-like helicase C-terminal domain J4N44_13085 PF12705 PD-(D/E)XK nuclease superfamily J4N44_13090 PF17946 RecC C-terminal domain J4N44_13095 PF00884 Sulfatase J4N44_13095 PF11893 Domain of unknown function (DUF3413) J4N44_13105 PF03466 LysR substrate binding domain J4N44_13105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_13110 PF07130 YebG protein J4N44_13125 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle J4N44_13125 PF14602 Hexapeptide repeat of succinyl-transferase J4N44_13130 PF03009 Glycerophosphoryl diester phosphodiesterase family J4N44_13135 PF07690 Major Facilitator Superfamily J4N44_13140 PF00230 Major intrinsic protein J4N44_13145 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J4N44_13145 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J4N44_13150 PF08220 DeoR-like helix-turn-helix domain J4N44_13150 PF00455 DeoR C terminal sensor domain J4N44_13155 PF16901 C-terminal domain of alpha-glycerophosphate oxidase J4N44_13155 PF01266 FAD dependent oxidoreductase J4N44_13160 PF01464 Transglycosylase SLT domain J4N44_13160 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain J4N44_13180 PF01588 Putative tRNA binding domain J4N44_13190 PF00356 Bacterial regulatory proteins, lacI family J4N44_13195 PF01263 Aldose 1-epimerase J4N44_13200 PF10509 Galactokinase galactose-binding signature J4N44_13200 PF08544 GHMP kinases C terminal J4N44_13200 PF00288 GHMP kinases N terminal domain J4N44_13205 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain J4N44_13205 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain J4N44_13210 PF16363 GDP-mannose 4,6 dehydratase J4N44_13215 PF00905 Penicillin binding protein transpeptidase domain J4N44_13215 PF03717 Penicillin-binding Protein dimerisation domain J4N44_13225 PF00356 Bacterial regulatory proteins, lacI family J4N44_13230 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J4N44_13230 PF02837 Glycosyl hydrolases family 2, sugar binding domain J4N44_13230 PF02929 Beta galactosidase small chain J4N44_13230 PF16353 Domain of unknown function(DUF4981) J4N44_13230 PF00703 Glycosyl hydrolases family 2 J4N44_13235 PF04074 YhcH/YjgK/YiaL J4N44_13240 PF13520 Amino acid permease J4N44_13245 PF03466 LysR substrate binding domain J4N44_13245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_13275 PF00437 Type II/IV secretion system protein J4N44_13305 PF04972 BON domain J4N44_13305 PF00263 Bacterial type II and III secretion system protein J4N44_13305 PF13629 Pilus formation protein N terminal region J4N44_13330 PF02805 Metal binding domain of Ada J4N44_13330 PF12833 Helix-turn-helix domain J4N44_13335 PF00501 AMP-binding enzyme J4N44_13345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_13345 PF03466 LysR substrate binding domain J4N44_13350 PF03764 Elongation factor G, domain IV J4N44_13350 PF14492 Elongation Factor G, domain II J4N44_13350 PF00009 Elongation factor Tu GTP binding domain J4N44_13350 PF03144 Elongation factor Tu domain 2 J4N44_13350 PF00679 Elongation factor G C-terminus J4N44_13355 PF18073 Rubredoxin metal binding domain J4N44_13365 PF18429 Domain of unknown function (DUF5609) J4N44_13375 PF01048 Phosphorylase superfamily J4N44_13380 PF01676 Metalloenzyme superfamily J4N44_13385 PF02885 Glycosyl transferase family, helical bundle domain J4N44_13385 PF00591 Glycosyl transferase family, a/b domain J4N44_13385 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain J4N44_13390 PF01791 DeoC/LacD family aldolase J4N44_13395 PF07670 Nucleoside recognition J4N44_13395 PF07662 Na+ dependent nucleoside transporter C-terminus J4N44_13395 PF01773 Na+ dependent nucleoside transporter N-terminus J4N44_13400 PF01026 TatD related DNase J4N44_13410 PF03144 Elongation factor Tu domain 2 J4N44_13410 PF00009 Elongation factor Tu GTP binding domain J4N44_13410 PF16658 Class II release factor RF3, C-terminal domain J4N44_13415 PF00990 Diguanylate cyclase, GGDEF domain J4N44_13415 PF05230 MASE2 domain J4N44_13435 PF13508 Acetyltransferase (GNAT) domain J4N44_13440 PF02036 SCP-2 sterol transfer family J4N44_13445 PF00563 EAL domain J4N44_13445 PF00990 Diguanylate cyclase, GGDEF domain J4N44_13445 PF03707 Bacterial signalling protein N terminal repeat J4N44_13450 PF01136 Peptidase family U32 J4N44_13455 PF01136 Peptidase family U32 J4N44_13460 PF01554 MatE J4N44_13470 PF07719 Tetratricopeptide repeat J4N44_13470 PF13181 Tetratricopeptide repeat J4N44_13475 PF03725 3' exoribonuclease family, domain 2 J4N44_13475 PF01138 3' exoribonuclease family, domain 1 J4N44_13475 PF00575 S1 RNA binding domain J4N44_13475 PF00013 KH domain J4N44_13475 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain J4N44_13480 PF00312 Ribosomal protein S15 J4N44_13485 PF09157 Pseudouridine synthase II TruB, C-terminal J4N44_13485 PF16198 tRNA pseudouridylate synthase B C-terminal domain J4N44_13485 PF01509 TruB family pseudouridylate synthase (N terminal domain) J4N44_13490 PF02033 Ribosome-binding factor A J4N44_13495 PF00009 Elongation factor Tu GTP binding domain J4N44_13495 PF11987 Translation-initiation factor 2 J4N44_13495 PF08364 Bacterial translation initiation factor IF-2 associated region J4N44_13495 PF04760 Translation initiation factor IF-2, N-terminal region J4N44_13500 PF13184 NusA-like KH domain J4N44_13500 PF08529 NusA N-terminal domain J4N44_13500 PF00575 S1 RNA binding domain J4N44_13505 PF02576 RimP N-terminal domain J4N44_13505 PF17384 RimP C-terminal SH3 domain J4N44_13520 PF03840 Preprotein translocase SecG subunit J4N44_13525 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J4N44_13525 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J4N44_13525 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J4N44_13525 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J4N44_13530 PF00809 Pterin binding enzyme J4N44_13535 PF01434 Peptidase family M41 J4N44_13535 PF06480 FtsH Extracellular J4N44_13535 PF00004 ATPase family associated with various cellular activities (AAA) J4N44_13535 PF17862 AAA+ lid domain J4N44_13540 PF01728 FtsJ-like methyltransferase J4N44_13545 PF01985 CRS1 / YhbY (CRM) domain J4N44_13550 PF01272 Transcription elongation factor, GreA/GreB, C-term J4N44_13550 PF03449 Transcription elongation factor, N-terminal J4N44_13555 PF13609 Gram-negative porin J4N44_13560 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family J4N44_13570 PF00579 tRNA synthetases class I (W and Y) J4N44_13575 PF08525 Opacity-associated protein A N-terminal motif J4N44_13575 PF01551 Peptidase family M23 J4N44_13575 PF01476 LysM domain J4N44_13580 PF00873 AcrB/AcrD/AcrF family J4N44_13585 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N44_13590 PF01521 Iron-sulphur cluster biosynthesis J4N44_13595 PF00202 Aminotransferase class-III J4N44_13600 PF01594 AI-2E family transporter J4N44_13605 PF05175 Methyltransferase small domain J4N44_13605 PF08468 Methyltransferase small domain N-terminal J4N44_13615 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N44_13615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_13615 PF00512 His Kinase A (phospho-acceptor) domain J4N44_13615 PF00072 Response regulator receiver domain J4N44_13620 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N44_13625 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_13630 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N44_13630 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_13635 PF00005 ABC transporter J4N44_13635 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N44_13640 PF00005 ABC transporter J4N44_13640 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N44_13650 PF01869 BadF/BadG/BcrA/BcrD ATPase family J4N44_13655 PF00728 Glycosyl hydrolase family 20, catalytic domain J4N44_13655 PF02838 Glycosyl hydrolase family 20, domain 2 J4N44_13660 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain J4N44_13660 PF06165 Glycosyltransferase family 36 J4N44_13665 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J4N44_13665 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J4N44_13665 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J4N44_13665 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J4N44_13670 PF00005 ABC transporter J4N44_13670 PF08402 TOBE domain J4N44_13680 PF13416 Bacterial extracellular solute-binding protein J4N44_13685 PF00909 Ammonium Transporter Family J4N44_13690 PF00543 Nitrogen regulatory protein P-II J4N44_13695 PF06062 Uncharacterised protein family (UPF0231) J4N44_13700 PF11791 Aconitate B N-terminal domain J4N44_13700 PF06434 Aconitate hydratase 2 N-terminus J4N44_13700 PF00330 Aconitase family (aconitate hydratase) J4N44_13705 PF01734 Patatin-like phospholipase J4N44_13710 PF00912 Transglycosylase J4N44_13710 PF00905 Penicillin binding protein transpeptidase domain J4N44_13710 PF14814 Bifunctional transglycosylase second domain J4N44_13715 PF00270 DEAD/DEAH box helicase J4N44_13715 PF04408 Helicase associated domain (HA2) J4N44_13715 PF08482 ATP-dependent helicase C-terminal J4N44_13715 PF00271 Helicase conserved C-terminal domain J4N44_13720 PF17746 SfsA N-terminal OB domain J4N44_13720 PF03749 Sugar fermentation stimulation protein RE domain J4N44_13725 PF01258 Prokaryotic dksA/traR C4-type zinc finger J4N44_13730 PF00749 tRNA synthetases class I (E and Q), catalytic domain J4N44_13735 PF01743 Poly A polymerase head domain J4N44_13735 PF12626 Polymerase A arginine-rich C-terminus J4N44_13735 PF12627 Probable RNA and SrmB- binding site of polymerase A J4N44_13740 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J4N44_13745 PF02548 Ketopantoate hydroxymethyltransferase J4N44_13750 PF02569 Pantoate-beta-alanine ligase J4N44_13755 PF03279 Bacterial lipid A biosynthesis acyltransferase J4N44_13760 PF01061 ABC-2 type transporter J4N44_13765 PF00005 ABC transporter J4N44_13770 PF01740 STAS domain J4N44_13770 PF00916 Sulfate permease family J4N44_13775 PF00484 Carbonic anhydrase J4N44_13780 PF00156 Phosphoribosyl transferase domain J4N44_13785 PF00440 Bacterial regulatory proteins, tetR family J4N44_13790 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N44_13790 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4N44_13795 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J4N44_13795 PF00364 Biotin-requiring enzyme J4N44_13795 PF02817 e3 binding domain J4N44_13800 PF00456 Transketolase, thiamine diphosphate binding domain J4N44_13800 PF17831 Pyruvate dehydrogenase E1 component middle domain J4N44_13805 PF00392 Bacterial regulatory proteins, gntR family J4N44_13805 PF07729 FCD domain J4N44_13810 PF01510 N-acetylmuramoyl-L-alanine amidase J4N44_13815 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain J4N44_13815 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain J4N44_13820 PF07963 Prokaryotic N-terminal methylation motif J4N44_13820 PF00114 Pilin (bacterial filament) J4N44_13825 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J4N44_13825 PF00437 Type II/IV secretion system protein J4N44_13830 PF00482 Type II secretion system (T2SS), protein F J4N44_13835 PF06750 Bacterial Peptidase A24 N-terminal domain J4N44_13835 PF01478 Type IV leader peptidase family J4N44_13840 PF01121 Dephospho-CoA kinase J4N44_13845 PF07072 Cell division protein J4N44_13850 PF03884 DNA gyrase inhibitor YacG J4N44_13855 PF01245 Ribosomal protein L19 J4N44_13860 PF01746 tRNA (Guanine-1)-methyltransferase J4N44_13865 PF05239 PRC-barrel domain J4N44_13865 PF01782 RimM N-terminal domain J4N44_13870 PF00886 Ribosomal protein S16 J4N44_13875 PF02881 SRP54-type protein, helical bundle domain J4N44_13875 PF02978 Signal peptide binding domain J4N44_13875 PF00448 SRP54-type protein, GTPase domain J4N44_13880 PF01578 Cytochrome C assembly protein J4N44_13885 PF01595 Cyclin M transmembrane N-terminal domain J4N44_13885 PF03471 Transporter associated domain J4N44_13885 PF00571 CBS domain J4N44_13890 PF02664 S-Ribosylhomocysteinase (LuxS) J4N44_13900 PF04262 Glutamate-cysteine ligase J4N44_13905 PF05193 Peptidase M16 inactive domain J4N44_13905 PF00675 Insulinase (Peptidase family M16) J4N44_13910 PF09335 SNARE associated Golgi protein J4N44_13915 PF00107 Zinc-binding dehydrogenase J4N44_13915 PF08240 Alcohol dehydrogenase GroES-like domain J4N44_13920 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit J4N44_13925 PF02436 Conserved carboxylase domain J4N44_13925 PF00682 HMGL-like J4N44_13925 PF00364 Biotin-requiring enzyme J4N44_13930 PF04277 Oxaloacetate decarboxylase, gamma chain J4N44_13985 PF02599 Global regulator protein family J4N44_13990 PF13840 ACT domain J4N44_13990 PF01842 ACT domain J4N44_13990 PF00696 Amino acid kinase family J4N44_13995 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J4N44_13995 PF01411 tRNA synthetases class II (A) J4N44_13995 PF02272 DHHA1 domain J4N44_14000 PF02631 RecX family J4N44_14005 PF00154 recA bacterial DNA recombination protein J4N44_14010 PF02464 Competence-damaged protein J4N44_14015 PF00488 MutS domain V J4N44_14015 PF05192 MutS domain III J4N44_14015 PF01624 MutS domain I J4N44_14015 PF05190 MutS family domain IV J4N44_14015 PF05188 MutS domain II J4N44_14020 PF04542 Sigma-70 region 2 J4N44_14020 PF04539 Sigma-70 region 3 J4N44_14020 PF00140 Sigma-70 factor, region 1.2 J4N44_14020 PF04545 Sigma-70, region 4 J4N44_14025 PF01476 LysM domain J4N44_14025 PF01551 Peptidase family M23 J4N44_14035 PF01975 Survival protein SurE J4N44_14040 PF01142 tRNA pseudouridine synthase D (TruD) J4N44_14045 PF02542 YgbB family J4N44_14050 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase J4N44_14055 PF04977 Septum formation initiator J4N44_14060 PF03952 Enolase, N-terminal domain J4N44_14060 PF00113 Enolase, C-terminal TIM barrel domain J4N44_14065 PF00117 Glutamine amidotransferase class-I J4N44_14065 PF06418 CTP synthase N-terminus J4N44_14070 PF03819 MazG nucleotide pyrophosphohydrolase domain J4N44_14075 PF02824 TGS domain J4N44_14075 PF04607 Region found in RelA / SpoT proteins J4N44_14075 PF13291 ACT domain J4N44_14080 PF05958 tRNA (Uracil-5-)-methyltransferase J4N44_14080 PF01938 TRAM domain J4N44_14085 PF01627 Hpt domain J4N44_14085 PF00672 HAMP domain J4N44_14085 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J4N44_14085 PF00072 Response regulator receiver domain J4N44_14085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_14085 PF00512 His Kinase A (phospho-acceptor) domain J4N44_14090 PF01648 4'-phosphopantetheinyl transferase superfamily J4N44_14095 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ J4N44_14100 PF11967 Recombination protein O N terminal J4N44_14100 PF02565 Recombination protein O C terminal J4N44_14105 PF07650 KH domain J4N44_14105 PF01926 50S ribosome-binding GTPase J4N44_14110 PF14622 Ribonuclease-III-like J4N44_14110 PF00035 Double-stranded RNA binding motif J4N44_14115 PF10502 Signal peptidase, peptidase S26 J4N44_14120 PF06421 GTP-binding protein LepA C-terminus J4N44_14120 PF03144 Elongation factor Tu domain 2 J4N44_14120 PF00009 Elongation factor Tu GTP binding domain J4N44_14120 PF00679 Elongation factor G C-terminus J4N44_14130 PF03888 MucB/RseB N-terminal domain J4N44_14130 PF17188 MucB/RseB C-terminal domain J4N44_14135 PF03872 Anti sigma-E protein RseA, N-terminal domain J4N44_14135 PF03873 Anti sigma-E protein RseA, C-terminal domain J4N44_14140 PF08281 Sigma-70, region 4 J4N44_14140 PF04542 Sigma-70 region 2 J4N44_14145 PF02910 Fumarate reductase flavoprotein C-term J4N44_14145 PF00890 FAD binding domain J4N44_14155 PF03937 Flavinator of succinate dehydrogenase J4N44_14175 PF01494 FAD binding domain J4N44_14180 PF01494 FAD binding domain J4N44_14185 PF03695 Uncharacterised protein family (UPF0149) J4N44_14190 PF05164 Cell division protein ZapA J4N44_14200 PF01812 5-formyltetrahydrofolate cyclo-ligase family J4N44_14205 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) J4N44_14210 PF01842 ACT domain J4N44_14210 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J4N44_14210 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N44_14215 PF04402 Protein of unknown function (DUF541) J4N44_14220 PF03466 LysR substrate binding domain J4N44_14220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_14225 PF01810 LysE type translocator J4N44_14235 PF05552 Conserved TM helix J4N44_14235 PF00924 Mechanosensitive ion channel J4N44_14240 PF01116 Fructose-bisphosphate aldolase class-II J4N44_14245 PF00162 Phosphoglycerate kinase J4N44_14250 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J4N44_14250 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J4N44_14260 PF02779 Transketolase, pyrimidine binding domain J4N44_14260 PF02780 Transketolase, C-terminal domain J4N44_14260 PF00456 Transketolase, thiamine diphosphate binding domain J4N44_14265 PF00438 S-adenosylmethionine synthetase, N-terminal domain J4N44_14265 PF02772 S-adenosylmethionine synthetase, central domain J4N44_14265 PF02773 S-adenosylmethionine synthetase, C-terminal domain J4N44_14275 PF17283 SprT-like zinc ribbon domain J4N44_14275 PF10263 SprT-like family J4N44_14280 PF04231 Endonuclease I J4N44_14285 PF04452 RNA methyltransferase J4N44_14290 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain J4N44_14290 PF02951 Prokaryotic glutathione synthetase, N-terminal domain J4N44_14295 PF02622 Uncharacterized ACR, COG1678 J4N44_14300 PF03652 Holliday junction resolvase J4N44_14305 PF00437 Type II/IV secretion system protein J4N44_14310 PF00437 Type II/IV secretion system protein J4N44_14315 PF01168 Alanine racemase, N-terminal domain J4N44_14320 PF03807 NADP oxidoreductase coenzyme F420-dependent J4N44_14320 PF14748 Pyrroline-5-carboxylate reductase dimerisation J4N44_14325 PF02325 YGGT family J4N44_14330 PF02594 Uncharacterised ACR, YggU family COG1872 J4N44_14340 PF01725 Ham1 family J4N44_14345 PF06969 HemN C-terminal domain J4N44_14345 PF04055 Radical SAM superfamily J4N44_14350 PF04960 Glutaminase J4N44_14355 PF02086 D12 class N6 adenine-specific DNA methyltransferase J4N44_14360 PF02390 Putative methyltransferase J4N44_14365 PF14815 NUDIX domain J4N44_14365 PF00730 HhH-GPD superfamily base excision DNA repair protein J4N44_14365 PF00633 Helix-hairpin-helix motif J4N44_14370 PF04362 Bacterial Fe(2+) trafficking J4N44_14375 PF01464 Transglycosylase SLT domain J4N44_14375 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain J4N44_14415 PF17200 Single Cache domain 2 J4N44_14415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N44_14415 PF00672 HAMP domain J4N44_14445 PF00171 Aldehyde dehydrogenase family J4N44_14495 PF00072 Response regulator receiver domain J4N44_14500 PF00356 Bacterial regulatory proteins, lacI family J4N44_14500 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family J4N44_14505 PF04794 YdjC-like protein J4N44_14510 PF11975 Family 4 glycosyl hydrolase C-terminal domain J4N44_14510 PF02056 Family 4 glycosyl hydrolase J4N44_14515 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit J4N44_14520 PF02378 Phosphotransferase system, EIIC J4N44_14525 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N44_14545 PF00106 short chain dehydrogenase J4N44_14555 PF03739 Lipopolysaccharide export system permease LptF/LptG J4N44_14560 PF03739 Lipopolysaccharide export system permease LptF/LptG J4N44_14565 PF02789 Cytosol aminopeptidase family, N-terminal domain J4N44_14565 PF00883 Cytosol aminopeptidase family, catalytic domain J4N44_14570 PF04364 DNA polymerase III chi subunit, HolC J4N44_14575 PF00133 tRNA synthetases class I (I, L, M and V) J4N44_14575 PF08264 Anticodon-binding domain of tRNA J4N44_14575 PF10458 Valyl tRNA synthetase tRNA binding arm J4N44_14585 PF00583 Acetyltransferase (GNAT) family J4N44_14595 PF06877 Regulator of ribonuclease activity B J4N44_14605 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J4N44_14605 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J4N44_14610 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J4N44_14610 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J4N44_14615 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain J4N44_14615 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain J4N44_14620 PF01042 Endoribonuclease L-PSP J4N44_14625 PF01553 Acyltransferase J4N44_14630 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J4N44_14635 PF01722 BolA-like protein J4N44_14645 PF05494 MlaC protein J4N44_14650 PF02470 MlaD protein J4N44_14655 PF02405 Permease MlaE J4N44_14660 PF00005 ABC transporter J4N44_14665 PF01699 Sodium/calcium exchanger protein J4N44_14670 PF01380 SIS domain J4N44_14670 PF00571 CBS domain J4N44_14680 PF03968 OstA-like protein J4N44_14685 PF00005 ABC transporter J4N44_14685 PF12399 Branched-chain amino acid ATP-binding cassette transporter J4N44_14690 PF04552 Sigma-54, DNA binding domain J4N44_14690 PF00309 Sigma-54 factor, Activator interacting domain (AID) J4N44_14690 PF04963 Sigma-54 factor, core binding domain J4N44_14695 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein J4N44_14700 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N44_14705 PF03668 P-loop ATPase protein family J4N44_14710 PF00381 PTS HPr component phosphorylation site J4N44_14715 PF03448 MgtE intracellular N domain J4N44_14715 PF00571 CBS domain J4N44_14715 PF01769 Divalent cation transporter J4N44_14720 PF01523 Putative modulator of DNA gyrase J4N44_14725 PF04751 Protein of unknown function (DUF615) J4N44_14730 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J4N44_14730 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N44_14735 PF00849 RNA pseudouridylate synthase J4N44_14745 PF18337 RapA N-terminal Tudor like domain J4N44_14745 PF00271 Helicase conserved C-terminal domain J4N44_14745 PF18339 RapA N-terminal Tudor like domain 1 J4N44_14745 PF00176 SNF2 family N-terminal domain J4N44_14745 PF12137 RNA polymerase recycling family C-terminal J4N44_14750 PF13638 PIN domain J4N44_14750 PF02562 PhoH-like protein J4N44_14755 PF01523 Putative modulator of DNA gyrase J4N44_14760 PF00795 Carbon-nitrogen hydrolase J4N44_14765 PF13502 AsmA-like C-terminal region J4N44_14765 PF13116 Protein of unknown function J4N44_14770 PF00575 S1 RNA binding domain J4N44_14770 PF10150 Ribonuclease E/G family J4N44_14775 PF02545 Maf-like protein J4N44_14780 PF04093 rod shape-determining protein MreD J4N44_14785 PF04085 rod shape-determining protein MreC J4N44_14825 PF07963 Prokaryotic N-terminal methylation motif J4N44_14835 PF00482 Type II secretion system (T2SS), protein F J4N44_14840 PF00437 Type II/IV secretion system protein J4N44_14840 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J4N44_14850 PF13401 AAA domain J4N44_14850 PF01471 Putative peptidoglycan binding domain J4N44_14855 PF00263 Bacterial type II and III secretion system protein J4N44_14855 PF03958 Bacterial type II/III secretion system short domain J4N44_14875 PF00563 EAL domain J4N44_14875 PF17157 Gammaproteobacterial periplasmic sensor domain J4N44_14875 PF00990 Diguanylate cyclase, GGDEF domain J4N44_14880 PF00436 Single-strand binding protein family J4N44_14885 PF00196 Bacterial regulatory proteins, luxR family J4N44_14890 PF00483 Nucleotidyl transferase J4N44_14895 PF17755 UvrA DNA-binding domain J4N44_14895 PF00005 ABC transporter J4N44_14895 PF17760 UvrA interaction domain J4N44_14905 PF00266 Aminotransferase class-V J4N44_14910 PF00696 Amino acid kinase family J4N44_14910 PF01842 ACT domain J4N44_14915 PF02965 Vitamin B12 dependent methionine synthase, activation domain J4N44_14915 PF02310 B12 binding domain J4N44_14915 PF02607 B12 binding domain J4N44_14915 PF02574 Homocysteine S-methyltransferase J4N44_14915 PF00809 Pterin binding enzyme J4N44_14920 PF00999 Sodium/hydrogen exchanger family J4N44_14970 PF01507 Phosphoadenosine phosphosulfate reductase family J4N44_14975 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain J4N44_14975 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J4N44_14980 PF00175 Oxidoreductase NAD-binding domain J4N44_14980 PF00667 FAD binding domain J4N44_14980 PF00258 Flavodoxin J4N44_15000 PF01207 Dihydrouridine synthase (Dus) J4N44_15005 PF01475 Ferric uptake regulator family J4N44_15015 PF00342 Phosphoglucose isomerase J4N44_15020 PF01894 Uncharacterised protein family UPF0047 J4N44_15030 PF00842 Alanine racemase, C-terminal domain J4N44_15030 PF01168 Alanine racemase, N-terminal domain J4N44_15035 PF00772 DnaB-like helicase N terminal domain J4N44_15035 PF03796 DnaB-like helicase C terminal domain J4N44_15045 PF03948 Ribosomal protein L9, C-terminal domain J4N44_15045 PF01281 Ribosomal protein L9, N-terminal domain J4N44_15050 PF01084 Ribosomal protein S18 J4N44_15055 PF01250 Ribosomal protein S6 J4N44_15060 PF00834 Ribulose-phosphate 3 epimerase family J4N44_15065 PF02086 D12 class N6 adenine-specific DNA methyltransferase J4N44_15075 PF01761 3-dehydroquinate synthase J4N44_15080 PF01202 Shikimate kinase J4N44_15085 PF00263 Bacterial type II and III secretion system protein J4N44_15085 PF03958 Bacterial type II/III secretion system short domain J4N44_15085 PF07660 Secretin and TonB N terminus short domain J4N44_15085 PF11741 AMIN domain J4N44_15090 PF04351 Pilus assembly protein, PilP J4N44_15110 PF00905 Penicillin binding protein transpeptidase domain J4N44_15110 PF17092 Penicillin-binding protein OB-like domain J4N44_15110 PF00912 Transglycosylase J4N44_15115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_15115 PF03466 LysR substrate binding domain J4N44_15120 PF08534 Redoxin J4N44_15120 PF00462 Glutaredoxin J4N44_15125 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N44_15125 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4N44_15135 PF00206 Lyase J4N44_15135 PF00583 Acetyltransferase (GNAT) family J4N44_15135 PF14698 Argininosuccinate lyase C-terminal J4N44_15140 PF00764 Arginosuccinate synthase J4N44_15145 PF00696 Amino acid kinase family J4N44_15150 PF02774 Semialdehyde dehydrogenase, dimerisation domain J4N44_15150 PF01118 Semialdehyde dehydrogenase, NAD binding domain J4N44_15155 PF07687 Peptidase dimerisation domain J4N44_15155 PF01546 Peptidase family M20/M25/M40 J4N44_15160 PF00311 Phosphoenolpyruvate carboxylase J4N44_15170 PF02219 Methylenetetrahydrofolate reductase J4N44_15175 PF00696 Amino acid kinase family J4N44_15175 PF00742 Homoserine dehydrogenase J4N44_15175 PF03447 Homoserine dehydrogenase, NAD binding domain J4N44_15180 PF01053 Cys/Met metabolism PLP-dependent enzyme J4N44_15185 PF01340 Met Apo-repressor, MetJ J4N44_15190 PF00390 Malic enzyme, N-terminal domain J4N44_15190 PF03949 Malic enzyme, NAD binding domain J4N44_15195 PF00210 Ferritin-like domain J4N44_15200 PF04324 BFD-like [2Fe-2S] binding domain J4N44_15205 PF03144 Elongation factor Tu domain 2 J4N44_15205 PF00009 Elongation factor Tu GTP binding domain J4N44_15205 PF03143 Elongation factor Tu C-terminal domain J4N44_15210 PF03143 Elongation factor Tu C-terminal domain J4N44_15210 PF03144 Elongation factor Tu domain 2 J4N44_15210 PF00009 Elongation factor Tu GTP binding domain J4N44_15215 PF14492 Elongation Factor G, domain II J4N44_15215 PF03764 Elongation factor G, domain IV J4N44_15215 PF00009 Elongation factor Tu GTP binding domain J4N44_15215 PF03144 Elongation factor Tu domain 2 J4N44_15215 PF00679 Elongation factor G C-terminus J4N44_15220 PF00177 Ribosomal protein S7p/S5e J4N44_15225 PF00164 Ribosomal protein S12/S23 J4N44_15230 PF04077 DsrH like protein J4N44_15235 PF02635 DsrE/DsrF-like family J4N44_15240 PF02635 DsrE/DsrF-like family J4N44_15250 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N44_15250 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J4N44_15260 PF04102 SlyX J4N44_15265 PF01112 Asparaginase J4N44_15270 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N44_15280 PF00999 Sodium/hydrogen exchanger family J4N44_15280 PF02254 TrkA-N domain J4N44_15285 PF02525 Flavodoxin-like fold J4N44_15290 PF00005 ABC transporter J4N44_15290 PF12848 ABC transporter J4N44_15300 PF00561 alpha/beta hydrolase fold J4N44_15305 PF06794 Uncharacterised protein family (UPF0270) J4N44_15310 PF00485 Phosphoribulokinase / Uridine kinase family J4N44_15315 PF00027 Cyclic nucleotide-binding domain J4N44_15315 PF13545 Crp-like helix-turn-helix domain J4N44_15325 PF00171 Aldehyde dehydrogenase family J4N44_15330 PF04958 Arginine N-succinyltransferase beta subunit J4N44_15335 PF00202 Aminotransferase class-III J4N44_15340 PF00117 Glutamine amidotransferase class-I J4N44_15350 PF00267 Gram-negative porin J4N44_15360 PF00579 tRNA synthetases class I (W and Y) J4N44_15365 PF13419 Haloacid dehalogenase-like hydrolase J4N44_15370 PF00588 SpoU rRNA Methylase family J4N44_15370 PF08032 RNA 2'-O ribose methyltransferase substrate binding J4N44_15375 PF17876 Cold shock domain J4N44_15375 PF08461 Ribonuclease R winged-helix domain J4N44_15375 PF08206 Ribonuclease B OB domain J4N44_15375 PF00773 RNB domain J4N44_15375 PF00575 S1 RNA binding domain J4N44_15380 PF02082 Transcriptional regulator J4N44_15385 PF00970 Oxidoreductase FAD-binding domain J4N44_15385 PF00042 Globin J4N44_15385 PF00175 Oxidoreductase NAD-binding domain J4N44_15390 PF08238 Sel1 repeat J4N44_15395 PF00709 Adenylosuccinate synthetase J4N44_15400 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) J4N44_15405 PF01145 SPFH domain / Band 7 family J4N44_15410 PF12221 Bacterial membrane protein N terminal J4N44_15410 PF01145 SPFH domain / Band 7 family J4N44_15415 PF16360 GTP-binding GTPase Middle Region J4N44_15415 PF13167 GTP-binding GTPase N-terminal J4N44_15415 PF01926 50S ribosome-binding GTPase J4N44_15420 PF17209 Hfq protein J4N44_15430 PF01119 DNA mismatch repair protein, C-terminal domain J4N44_15430 PF08676 MutL C terminal dimerisation domain J4N44_15435 PF01520 N-acetylmuramoyl-L-alanine amidase J4N44_15440 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE J4N44_15445 PF08331 Domain of unknown function (DUF1730) J4N44_15510 PF00929 Exonuclease J4N44_15515 PF03193 RsgA GTPase J4N44_15520 PF02666 Phosphatidylserine decarboxylase J4N44_15525 PF00939 Sodium:sulfate symporter transmembrane region J4N44_15530 PF00672 HAMP domain J4N44_15530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N44_15540 PF06415 BPG-independent PGAM N-terminus (iPGM_N) J4N44_15540 PF01676 Metalloenzyme superfamily J4N44_15545 PF00581 Rhodanese-like domain J4N44_15550 PF02556 Preprotein translocase subunit SecB J4N44_15555 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus J4N44_15555 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus J4N44_15560 PF06426 Serine acetyltransferase, N-terminal J4N44_15560 PF00132 Bacterial transferase hexapeptide (six repeats) J4N44_15565 PF01551 Peptidase family M23 J4N44_15575 PF08360 QacR-like protein, C-terminal region J4N44_15575 PF00440 Bacterial regulatory proteins, tetR family J4N44_15585 PF00152 tRNA synthetases class II (D, K and N) J4N44_15590 PF02910 Fumarate reductase flavoprotein C-term J4N44_15590 PF00890 FAD binding domain J4N44_15595 PF13183 4Fe-4S dicluster domain J4N44_15595 PF13085 2Fe-2S iron-sulfur cluster binding domain J4N44_15600 PF02300 Fumarate reductase subunit C J4N44_15605 PF02313 Fumarate reductase subunit D J4N44_15620 PF01132 Elongation factor P (EF-P) OB domain J4N44_15620 PF09285 Elongation factor P, C-terminal J4N44_15620 PF08207 Elongation factor P (EF-P) KOW-like domain J4N44_15625 PF04055 Radical SAM superfamily J4N44_15630 PF02308 MgtC family J4N44_15640 PF00118 TCP-1/cpn60 chaperonin family J4N44_15645 PF00166 Chaperonin 10 Kd subunit J4N44_15650 PF01554 MatE J4N44_15655 PF00365 Phosphofructokinase J4N44_15660 PF01545 Cation efflux family J4N44_15660 PF16916 Dimerisation domain of Zinc Transporter J4N44_15665 PF07813 LTXXQ motif family protein J4N44_15670 PF00072 Response regulator receiver domain J4N44_15670 PF00486 Transcriptional regulatory protein, C terminal J4N44_15675 PF00512 His Kinase A (phospho-acceptor) domain J4N44_15675 PF00672 HAMP domain J4N44_15675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_15675 PF16527 Two-component sensor protein CpxA, periplasmic domain J4N44_15680 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain J4N44_15680 PF02777 Iron/manganese superoxide dismutases, C-terminal domain J4N44_15685 PF00588 SpoU rRNA Methylase family J4N44_15690 PF04186 FxsA cytoplasmic membrane protein J4N44_15695 PF10415 Fumarase C C-terminus J4N44_15695 PF00206 Lyase J4N44_15700 PF03605 Anaerobic c4-dicarboxylate membrane transporter J4N44_15705 PF02683 Cytochrome C biogenesis protein transmembrane region J4N44_15705 PF11412 Disulphide bond corrector protein DsbC J4N44_15710 PF00196 Bacterial regulatory proteins, luxR family J4N44_15710 PF00072 Response regulator receiver domain J4N44_15715 PF01914 MarC family integral membrane protein J4N44_15725 PF00474 Sodium:solute symporter family J4N44_15740 PF10415 Fumarase C C-terminus J4N44_15740 PF00206 Lyase J4N44_15745 PF01627 Hpt domain J4N44_15745 PF00072 Response regulator receiver domain J4N44_15745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_15745 PF00512 His Kinase A (phospho-acceptor) domain J4N44_15745 PF00672 HAMP domain J4N44_15750 PF12832 MFS_1 like family J4N44_15765 PF16177 Acetyl-coenzyme A synthetase N-terminus J4N44_15765 PF00501 AMP-binding enzyme J4N44_15765 PF13193 AMP-binding enzyme C-terminal domain J4N44_15770 PF01220 Dehydroquinase class II J4N44_15775 PF00364 Biotin-requiring enzyme J4N44_15780 PF02785 Biotin carboxylase C-terminal domain J4N44_15780 PF00289 Biotin carboxylase, N-terminal domain J4N44_15780 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J4N44_15790 PF01207 Dihydrouridine synthase (Dus) J4N44_15795 PF02954 Bacterial regulatory protein, Fis family J4N44_15800 PF00990 Diguanylate cyclase, GGDEF domain J4N44_15800 PF08448 PAS fold J4N44_15845 PF08240 Alcohol dehydrogenase GroES-like domain J4N44_15845 PF00107 Zinc-binding dehydrogenase J4N44_15850 PF01276 Orn/Lys/Arg decarboxylase, major domain J4N44_15850 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain J4N44_15850 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain J4N44_15855 PF13520 Amino acid permease J4N44_15860 PF18500 CadC C-terminal domain 1 J4N44_15860 PF00486 Transcriptional regulatory protein, C terminal J4N44_15865 PF13411 MerR HTH family regulatory protein J4N44_15870 PF01808 AICARFT/IMPCHase bienzyme J4N44_15870 PF02142 MGS-like domain J4N44_15875 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain J4N44_15875 PF02844 Phosphoribosylglycinamide synthetase, N domain J4N44_15875 PF02843 Phosphoribosylglycinamide synthetase, C domain J4N44_15885 PF00216 Bacterial DNA-binding protein J4N44_15890 PF01595 Cyclin M transmembrane N-terminal domain J4N44_15890 PF00571 CBS domain J4N44_15895 PF04222 Protein of unknown function (DUF416) J4N44_15900 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N44_15905 PF03167 Uracil DNA glycosylase superfamily J4N44_15910 PF01208 Uroporphyrinogen decarboxylase (URO-D) J4N44_15925 PF00293 NUDIX domain J4N44_15925 PF09297 NADH pyrophosphatase zinc ribbon domain J4N44_15930 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ J4N44_15935 PF05000 RNA polymerase Rpb1, domain 4 J4N44_15935 PF04997 RNA polymerase Rpb1, domain 1 J4N44_15935 PF04998 RNA polymerase Rpb1, domain 5 J4N44_15935 PF04983 RNA polymerase Rpb1, domain 3 J4N44_15935 PF00623 RNA polymerase Rpb1, domain 2 J4N44_15940 PF04563 RNA polymerase beta subunit J4N44_15940 PF10385 RNA polymerase beta subunit external 1 domain J4N44_15940 PF00562 RNA polymerase Rpb2, domain 6 J4N44_15940 PF04561 RNA polymerase Rpb2, domain 2 J4N44_15940 PF04565 RNA polymerase Rpb2, domain 3 J4N44_15940 PF04560 RNA polymerase Rpb2, domain 7 J4N44_15945 PF00542 Ribosomal protein L7/L12 C-terminal domain J4N44_15945 PF16320 Ribosomal protein L7/L12 dimerisation domain J4N44_15950 PF00466 Ribosomal protein L10 J4N44_15955 PF00687 Ribosomal protein L1p/L10e family J4N44_15960 PF03946 Ribosomal protein L11, N-terminal domain J4N44_15960 PF00298 Ribosomal protein L11, RNA binding domain J4N44_15965 PF00467 KOW motif J4N44_15965 PF02357 Transcription termination factor nusG J4N44_15970 PF00584 SecE/Sec61-gamma subunits of protein translocation complex J4N44_16000 PF00485 Phosphoribulokinase / Uridine kinase family J4N44_16005 PF02237 Biotin protein ligase C terminal domain J4N44_16005 PF03099 Biotin/lipoate A/B protein ligase family J4N44_16005 PF08279 HTH domain J4N44_16010 PF01565 FAD binding domain J4N44_16010 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain J4N44_16020 PF13091 PLD-like domain J4N44_16090 PF01177 Asp/Glu/Hydantoin racemase J4N44_16100 PF00593 TonB dependent receptor J4N44_16100 PF07715 TonB-dependent Receptor Plug Domain J4N44_16105 PF05958 tRNA (Uracil-5-)-methyltransferase J4N44_16115 PF00440 Bacterial regulatory proteins, tetR family J4N44_16120 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4N44_16120 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N44_16125 PF01554 MatE J4N44_16135 PF01726 LexA DNA binding domain J4N44_16135 PF00717 Peptidase S24-like J4N44_16140 PF01553 Acyltransferase J4N44_16145 PF01040 UbiA prenyltransferase family J4N44_16150 PF04345 Chorismate lyase J4N44_16155 PF03748 Flagellar basal body-associated protein FliL J4N44_16160 PF01694 Rhomboid family J4N44_16160 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease J4N44_16165 PF00581 Rhodanese-like domain J4N44_16170 PF04545 Sigma-70, region 4 J4N44_16170 PF00140 Sigma-70 factor, region 1.2 J4N44_16170 PF04542 Sigma-70 region 2 J4N44_16175 PF18075 FtsX extracellular domain J4N44_16180 PF00005 ABC transporter J4N44_16185 PF02881 SRP54-type protein, helical bundle domain J4N44_16185 PF02881 SRP54-type protein, helical bundle domain J4N44_16185 PF00448 SRP54-type protein, GTPase domain J4N44_16185 PF00448 SRP54-type protein, GTPase domain J4N44_16200 PF01914 MarC family integral membrane protein J4N44_16220 PF10694 Protein of unknown function (DUF2500) J4N44_16245 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J4N44_16245 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J4N44_16250 PF01022 Bacterial regulatory protein, arsR family J4N44_16255 PF00563 EAL domain J4N44_16255 PF08668 HDOD domain J4N44_16260 PF01810 LysE type translocator J4N44_16265 PF12146 Serine aminopeptidase, S33 J4N44_16285 PF03942 DTW domain J4N44_16290 PF10442 FIST C domain J4N44_16290 PF00990 Diguanylate cyclase, GGDEF domain J4N44_16290 PF00563 EAL domain J4N44_16290 PF08495 FIST N domain J4N44_16295 PF13419 Haloacid dehalogenase-like hydrolase J4N44_16300 PF02899 Phage integrase, N-terminal SAM-like domain J4N44_16300 PF00589 Phage integrase family J4N44_16310 PF01678 Diaminopimelate epimerase J4N44_16315 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain J4N44_16315 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J4N44_16325 PF01491 Frataxin-like domain J4N44_16330 PF12633 Adenylate cyclase NT domain J4N44_16330 PF01295 Adenylate cyclase, class-I J4N44_16335 PF03900 Porphobilinogen deaminase, C-terminal domain J4N44_16335 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain J4N44_16340 PF02602 Uroporphyrinogen-III synthase HemD J4N44_16345 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase J4N44_16350 PF07219 HemY protein N-terminus J4N44_16385 PF00175 Oxidoreductase NAD-binding domain J4N44_16390 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N44_16395 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase J4N44_16405 PF07497 Rho termination factor, RNA-binding domain J4N44_16405 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N44_16405 PF07498 Rho termination factor, N-terminal domain J4N44_16410 PF00085 Thioredoxin J4N44_16415 PF00270 DEAD/DEAH box helicase J4N44_16415 PF00271 Helicase conserved C-terminal domain J4N44_16420 PF02541 Ppx/GppA phosphatase family J4N44_16425 PF02592 Putative vitamin uptake transporter J4N44_16435 PF00570 HRDC domain J4N44_16435 PF00271 Helicase conserved C-terminal domain J4N44_16435 PF16124 RecQ zinc-binding J4N44_16435 PF09382 RQC domain J4N44_16435 PF00270 DEAD/DEAH box helicase J4N44_16440 PF00892 EamA-like transporter family J4N44_16450 PF01810 LysE type translocator J4N44_16460 PF13361 UvrD-like helicase C-terminal domain J4N44_16460 PF00580 UvrD/REP helicase N-terminal domain J4N44_16470 PF05114 Protein of unknown function (DUF692) J4N44_16490 PF07690 Major Facilitator Superfamily J4N44_16495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_16495 PF03466 LysR substrate binding domain J4N44_16500 PF01321 Creatinase/Prolidase N-terminal domain J4N44_16500 PF00557 Metallopeptidase family M24 J4N44_16500 PF01321 Creatinase/Prolidase N-terminal domain J4N44_16500 PF00557 Metallopeptidase family M24 J4N44_16505 PF04055 Radical SAM superfamily J4N44_16505 PF06968 Biotin and Thiamin Synthesis associated domain J4N44_16510 PF05690 Thiazole biosynthesis protein ThiG J4N44_16515 PF02597 ThiS family J4N44_16520 PF00899 ThiF family J4N44_16525 PF02581 Thiamine monophosphate synthase J4N44_16530 PF01964 Radical SAM ThiC family J4N44_16530 PF13667 ThiC-associated domain J4N44_16535 PF02537 CrcB-like protein, Camphor Resistance (CrcB) J4N44_16540 PF00394 Multicopper oxidase J4N44_16540 PF07732 Multicopper oxidase J4N44_16540 PF07731 Multicopper oxidase J4N44_16580 PF00132 Bacterial transferase hexapeptide (six repeats) J4N44_16590 PF18317 Shikimate 5'-dehydrogenase C-terminal domain J4N44_16590 PF01488 Shikimate / quinate 5-dehydrogenase J4N44_16590 PF08501 Shikimate dehydrogenase substrate binding domain J4N44_16595 PF01218 Coproporphyrinogen III oxidase J4N44_16600 PF01300 Telomere recombination J4N44_16605 PF00731 AIR carboxylase J4N44_16610 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain J4N44_16610 PF02222 ATP-grasp domain J4N44_16615 PF01396 Topoisomerase DNA binding C4 zinc finger J4N44_16620 PF04361 Protein of unknown function (DUF494) J4N44_16625 PF02481 DNA recombination-mediator protein A J4N44_16625 PF17782 DprA winged helix domain J4N44_16635 PF01327 Polypeptide deformylase J4N44_16640 PF00551 Formyl transferase J4N44_16640 PF02911 Formyl transferase, C-terminal domain J4N44_16645 PF01189 16S rRNA methyltransferase RsmB/F J4N44_16645 PF01029 NusB family J4N44_16650 PF02254 TrkA-N domain J4N44_16650 PF02080 TrkA-C domain J4N44_16655 PF02386 Cation transport protein J4N44_16665 PF03006 Haemolysin-III related J4N44_16670 PF07070 SpoOM protein J4N44_16680 PF06288 Protein of unknown function (DUF1040) J4N44_16685 PF13746 4Fe-4S dicluster domain J4N44_16685 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase J4N44_16685 PF12801 4Fe-4S binding domain J4N44_16690 PF01636 Phosphotransferase enzyme family J4N44_16695 PF01323 DSBA-like thioredoxin domain J4N44_16700 PF01553 Acyltransferase J4N44_16710 PF08448 PAS fold J4N44_16710 PF00990 Diguanylate cyclase, GGDEF domain J4N44_16715 PF01078 Magnesium chelatase, subunit ChlI J4N44_16715 PF13335 Magnesium chelatase, subunit ChlI C-terminal J4N44_16740 PF17782 DprA winged helix domain J4N44_16740 PF02481 DNA recombination-mediator protein A J4N44_16750 PF02796 Helix-turn-helix domain of resolvase J4N44_16750 PF00239 Resolvase, N terminal domain J4N44_16765 PF13408 Recombinase zinc beta ribbon domain J4N44_16765 PF07508 Recombinase J4N44_16765 PF00239 Resolvase, N terminal domain J4N44_16770 PF01078 Magnesium chelatase, subunit ChlI J4N44_16770 PF13335 Magnesium chelatase, subunit ChlI C-terminal J4N44_16775 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J4N44_16775 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J4N44_16775 PF00205 Thiamine pyrophosphate enzyme, central domain J4N44_16785 PF01063 Amino-transferase class IV J4N44_16790 PF00920 Dehydratase family J4N44_16795 PF00291 Pyridoxal-phosphate dependent enzyme J4N44_16795 PF00585 C-terminal regulatory domain of Threonine dehydratase J4N44_16800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_16800 PF03466 LysR substrate binding domain J4N44_16805 PF07690 Major Facilitator Superfamily J4N44_16810 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N44_16815 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_16820 PF00132 Bacterial transferase hexapeptide (six repeats) J4N44_16820 PF12804 MobA-like NTP transferase domain J4N44_16825 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain J4N44_16825 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain J4N44_16830 PF02874 ATP synthase alpha/beta family, beta-barrel domain J4N44_16830 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N44_16835 PF00231 ATP synthase J4N44_16840 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N44_16840 PF00306 ATP synthase alpha/beta chain, C terminal domain J4N44_16840 PF02874 ATP synthase alpha/beta family, beta-barrel domain J4N44_16845 PF00213 ATP synthase delta (OSCP) subunit J4N44_16850 PF00430 ATP synthase B/B' CF(0) J4N44_16855 PF00137 ATP synthase subunit C J4N44_16860 PF00119 ATP synthase A chain J4N44_16865 PF03899 ATP synthase I chain J4N44_16870 PF02195 ParB-like nuclease domain J4N44_16870 PF17762 HTH domain found in ParB protein J4N44_16875 PF13614 AAA domain J4N44_16880 PF02527 rRNA small subunit methyltransferase G J4N44_16885 PF01134 Glucose inhibited division protein A J4N44_16885 PF13932 GidA associated domain J4N44_16890 PF00258 Flavodoxin J4N44_16895 PF01926 50S ribosome-binding GTPase J4N44_16895 PF12631 MnmE helical domain J4N44_16895 PF10396 GTP-binding protein TrmE N-terminus J4N44_16900 PF02096 60Kd inner membrane protein J4N44_16900 PF14849 YidC periplasmic domain J4N44_16905 PF01809 Putative membrane protein insertion efficiency factor J4N44_16910 PF00825 Ribonuclease P J4N44_16915 PF00468 Ribosomal protein L34 J4N44_16920 PF00005 ABC transporter J4N44_16925 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_16930 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N44_16935 PF13614 AAA domain J4N44_16935 PF18607 ParA helix turn helix domain J4N44_16940 PF08775 ParB family J4N44_16940 PF02195 ParB-like nuclease domain J4N44_16945 PF13718 GNAT acetyltransferase 2 J4N44_16945 PF05127 Helicase J4N44_16950 PF03544 Gram-negative bacterial TonB protein C-terminal J4N44_16955 PF02472 Biopolymer transport protein ExbD/TolR J4N44_16960 PF01618 MotA/TolQ/ExbB proton channel family J4N44_16995 PF04542 Sigma-70 region 2 J4N44_16995 PF08281 Sigma-70, region 4 J4N44_17005 PF00132 Bacterial transferase hexapeptide (six repeats) J4N44_17010 PF03466 LysR substrate binding domain J4N44_17010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_17020 PF00246 Zinc carboxypeptidase J4N44_17025 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N44_17030 PF03358 NADPH-dependent FMN reductase J4N44_17040 PF00664 ABC transporter transmembrane region J4N44_17040 PF00005 ABC transporter J4N44_17040 PF03412 Peptidase C39 family J4N44_17055 PF00529 HlyD membrane-fusion protein of T1SS J4N44_17060 PF00072 Response regulator receiver domain J4N44_17060 PF00158 Sigma-54 interaction domain J4N44_17060 PF02954 Bacterial regulatory protein, Fis family J4N44_17065 PF02743 Cache domain J4N44_17065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_17065 PF00512 His Kinase A (phospho-acceptor) domain J4N44_17070 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region J4N44_17070 PF01243 Pyridoxamine 5'-phosphate oxidase J4N44_17080 PF12833 Helix-turn-helix domain J4N44_17085 PF00171 Aldehyde dehydrogenase family J4N44_17085 PF01619 Proline dehydrogenase J4N44_17085 PF14850 DNA-binding domain of Proline dehydrogenase J4N44_17085 PF18327 Proline utilization A proline dehydrogenase N-terminal domain J4N44_17095 PF00474 Sodium:solute symporter family J4N44_17140 PF01037 Lrp/AsnC ligand binding domain J4N44_17150 PF00664 ABC transporter transmembrane region J4N44_17150 PF00005 ABC transporter J4N44_17170 PF10688 Bacterial inner membrane protein J4N44_17175 PF01081 KDPG and KHG aldolase J4N44_17180 PF00294 pfkB family carbohydrate kinase J4N44_17185 PF02614 Glucuronate isomerase J4N44_17190 PF08125 Mannitol dehydrogenase C-terminal domain J4N44_17190 PF01232 Mannitol dehydrogenase Rossmann domain J4N44_17195 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J4N44_17200 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component J4N44_17205 PF03480 Bacterial extracellular solute-binding protein, family 7 J4N44_17210 PF07729 FCD domain J4N44_17210 PF00392 Bacterial regulatory proteins, gntR family J4N44_17215 PF03786 D-mannonate dehydratase (UxuA) J4N44_17220 PF13443 Cro/C1-type HTH DNA-binding domain J4N44_17235 PF00155 Aminotransferase class I and II J4N44_17240 PF04542 Sigma-70 region 2 J4N44_17240 PF08281 Sigma-70, region 4 J4N44_17250 PF00270 DEAD/DEAH box helicase J4N44_17250 PF00271 Helicase conserved C-terminal domain J4N44_17255 PF06629 MltA-interacting protein MipA J4N44_17265 PF13673 Acetyltransferase (GNAT) domain J4N44_17270 PF03473 MOSC domain J4N44_17270 PF03475 3-alpha domain J4N44_17285 PF01037 Lrp/AsnC ligand binding domain J4N44_17285 PF13404 AsnC-type helix-turn-helix domain J4N44_17290 PF01810 LysE type translocator J4N44_17300 PF02743 Cache domain J4N44_17300 PF00672 HAMP domain J4N44_17300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N44_17305 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N44_17340 PF01547 Bacterial extracellular solute-binding protein J4N44_17345 PF00128 Alpha amylase, catalytic domain J4N44_17345 PF02903 Alpha amylase, N-terminal ig-like domain J4N44_17345 PF16657 Maltogenic Amylase, C-terminal domain J4N44_17350 PF00128 Alpha amylase, catalytic domain J4N44_17350 PF16657 Maltogenic Amylase, C-terminal domain J4N44_17355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_17355 PF03466 LysR substrate binding domain J4N44_17380 PF00392 Bacterial regulatory proteins, gntR family J4N44_17380 PF07729 FCD domain J4N44_17385 PF05035 2-keto-3-deoxy-galactonokinase J4N44_17390 PF01081 KDPG and KHG aldolase J4N44_17395 PF03480 Bacterial extracellular solute-binding protein, family 7 J4N44_17400 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component J4N44_17400 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J4N44_17405 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J4N44_17405 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component J4N44_17410 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J4N44_17410 PF13378 Enolase C-terminal domain-like J4N44_17415 PF00920 Dehydratase family J4N44_17420 PF00701 Dihydrodipicolinate synthetase family J4N44_17425 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N44_17425 PF13192 Thioredoxin domain J4N44_17430 PF10417 C-terminal domain of 1-Cys peroxiredoxin J4N44_17430 PF00578 AhpC/TSA family J4N44_17440 PF01047 MarR family J4N44_17445 PF02566 OsmC-like protein J4N44_17460 PF00672 HAMP domain J4N44_17460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N44_17460 PF17200 Single Cache domain 2 J4N44_17465 PF00675 Insulinase (Peptidase family M16) J4N44_17465 PF05193 Peptidase M16 inactive domain J4N44_17490 PF01551 Peptidase family M23 J4N44_17490 PF04225 Opacity-associated protein A LysM-like domain J4N44_17500 PF13533 Biotin-lipoyl like J4N44_17510 PF08360 QacR-like protein, C-terminal region J4N44_17510 PF00440 Bacterial regulatory proteins, tetR family J4N44_17515 PF00005 ABC transporter J4N44_17520 PF01032 FecCD transport family J4N44_17525 PF01032 FecCD transport family J4N44_17530 PF01497 Periplasmic binding protein J4N44_17535 PF03466 LysR substrate binding domain J4N44_17535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_17540 PF00593 TonB dependent receptor J4N44_17540 PF07715 TonB-dependent Receptor Plug Domain J4N44_17545 PF00892 EamA-like transporter family J4N44_17560 PF07690 Major Facilitator Superfamily J4N44_17570 PF00356 Bacterial regulatory proteins, lacI family J4N44_17585 PF07690 Major Facilitator Superfamily J4N44_17590 PF00474 Sodium:solute symporter family J4N44_17595 PF03313 Serine dehydratase alpha chain J4N44_17595 PF03315 Serine dehydratase beta chain J4N44_17610 PF13187 4Fe-4S dicluster domain J4N44_17610 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain J4N44_17610 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J4N44_17615 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B J4N44_17615 PF00175 Oxidoreductase NAD-binding domain J4N44_17620 PF17179 4Fe-4S dicluster domain J4N44_17625 PF10414 Sirohaem synthase dimerisation region J4N44_17625 PF14824 Sirohaem biosynthesis protein central J4N44_17625 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N44_17635 PF00990 Diguanylate cyclase, GGDEF domain J4N44_17640 PF00128 Alpha amylase, catalytic domain J4N44_17640 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J4N44_17645 PF02264 LamB porin J4N44_17660 PF02903 Alpha amylase, N-terminal ig-like domain J4N44_17660 PF00128 Alpha amylase, catalytic domain J4N44_17665 PF04231 Endonuclease I J4N44_17670 PF00155 Aminotransferase class I and II J4N44_17670 PF00392 Bacterial regulatory proteins, gntR family J4N44_17715 PF00583 Acetyltransferase (GNAT) family J4N44_17745 PF03264 NapC/NirT cytochrome c family, N-terminal region J4N44_17750 PF00384 Molybdopterin oxidoreductase J4N44_17750 PF01568 Molydopterin dinucleotide binding domain J4N44_17750 PF18364 Molybdopterin oxidoreductase N-terminal domain J4N44_17755 PF01569 PAP2 superfamily J4N44_17760 PF02581 Thiamine monophosphate synthase J4N44_17765 PF02110 Hydroxyethylthiazole kinase family J4N44_17770 PF03070 TENA/THI-4/PQQC family J4N44_17775 PF09084 NMT1/THI5 like J4N44_17780 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_17785 PF00005 ABC transporter J4N44_17790 PF08543 Phosphomethylpyrimidine kinase J4N44_17795 PF01523 Putative modulator of DNA gyrase J4N44_17800 PF01523 Putative modulator of DNA gyrase J4N44_17805 PF04013 Putative SAM-dependent RNA methyltransferase J4N44_17855 PF10928 Protein of unknown function (DUF2810) J4N44_17860 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J4N44_17860 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J4N44_17870 PF03009 Glycerophosphoryl diester phosphodiesterase family J4N44_17875 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain J4N44_17875 PF00056 lactate/malate dehydrogenase, NAD binding domain J4N44_17880 PF00072 Response regulator receiver domain J4N44_17880 PF00486 Transcriptional regulatory protein, C terminal J4N44_17885 PF00672 HAMP domain J4N44_17885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_17885 PF00512 His Kinase A (phospho-acceptor) domain J4N44_17885 PF16750 Sensor domain of 2-component histidine kinase J4N44_17890 PF07715 TonB-dependent Receptor Plug Domain J4N44_17890 PF00593 TonB dependent receptor J4N44_17900 PF01618 MotA/TolQ/ExbB proton channel family J4N44_17905 PF01618 MotA/TolQ/ExbB proton channel family J4N44_17910 PF02472 Biopolymer transport protein ExbD/TolR J4N44_17955 PF01297 Zinc-uptake complex component A periplasmic J4N44_17960 PF00005 ABC transporter J4N44_17965 PF00950 ABC 3 transport family J4N44_17980 PF00326 Prolyl oligopeptidase family J4N44_17980 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain J4N44_17985 PF07690 Major Facilitator Superfamily J4N44_17990 PF00491 Arginase family J4N44_17995 PF17810 Arginine decarboxylase helical bundle domain J4N44_17995 PF17944 Arginine decarboxylase C-terminal helical extension J4N44_17995 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J4N44_18000 PF00753 Metallo-beta-lactamase superfamily J4N44_18005 PF18030 RimK PreATP-grasp domain J4N44_18005 PF08443 RimK-like ATP-grasp domain J4N44_18010 PF18030 RimK PreATP-grasp domain J4N44_18010 PF08443 RimK-like ATP-grasp domain J4N44_18020 PF12706 Beta-lactamase superfamily domain J4N44_18030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_18030 PF03466 LysR substrate binding domain J4N44_18055 PF00232 Glycosyl hydrolase family 1 J4N44_18060 PF02743 Cache domain J4N44_18060 PF00512 His Kinase A (phospho-acceptor) domain J4N44_18060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_18065 PF00158 Sigma-54 interaction domain J4N44_18065 PF02954 Bacterial regulatory protein, Fis family J4N44_18065 PF00072 Response regulator receiver domain J4N44_18070 PF05525 Branched-chain amino acid transport protein J4N44_18085 PF01266 FAD dependent oxidoreductase J4N44_18095 PF00182 Chitinase class I J4N44_18110 PF03116 NQR2, RnfD, RnfE family J4N44_18115 PF01212 Beta-eliminating lyase J4N44_18130 PF07670 Nucleoside recognition J4N44_18130 PF07662 Na+ dependent nucleoside transporter C-terminus J4N44_18130 PF01773 Na+ dependent nucleoside transporter N-terminus J4N44_18135 PF00483 Nucleotidyl transferase J4N44_18155 PF00990 Diguanylate cyclase, GGDEF domain J4N44_18155 PF05230 MASE2 domain J4N44_18170 PF00990 Diguanylate cyclase, GGDEF domain J4N44_18175 PF00875 DNA photolyase J4N44_18175 PF03441 FAD binding domain of DNA photolyase J4N44_18180 PF04244 Deoxyribodipyrimidine photo-lyase-related protein J4N44_18195 PF01625 Peptide methionine sulfoxide reductase J4N44_18195 PF01641 SelR domain J4N44_18200 PF02566 OsmC-like protein J4N44_18205 PF12464 Maltose acetyltransferase J4N44_18205 PF14602 Hexapeptide repeat of succinyl-transferase J4N44_18245 PF03466 LysR substrate binding domain J4N44_18245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_18250 PF13419 Haloacid dehalogenase-like hydrolase J4N44_18285 PF00657 GDSL-like Lipase/Acylhydrolase J4N44_18290 PF00082 Subtilase family J4N44_18290 PF05922 Peptidase inhibitor I9 J4N44_18300 PF03611 PTS system sugar-specific permease component J4N44_18310 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N44_18315 PF00356 Bacterial regulatory proteins, lacI family J4N44_18320 PF13419 Haloacid dehalogenase-like hydrolase J4N44_18325 PF00202 Aminotransferase class-III J4N44_18330 PF00266 Aminotransferase class-V J4N44_18340 PF00005 ABC transporter J4N44_18345 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_18350 PF00392 Bacterial regulatory proteins, gntR family J4N44_18350 PF07702 UTRA domain J4N44_18365 PF04393 Protein of unknown function (DUF535) J4N44_18375 PF01266 FAD dependent oxidoreductase J4N44_18380 PF00246 Zinc carboxypeptidase J4N44_18380 PF18027 Cytosolic carboxypeptidase N-terminal domain J4N44_18385 PF00691 OmpA family J4N44_18385 PF01389 OmpA-like transmembrane domain J4N44_18390 PF03466 LysR substrate binding domain J4N44_18390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_18400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_18400 PF03466 LysR substrate binding domain J4N44_18410 PF01566 Natural resistance-associated macrophage protein J4N44_18415 PF00854 POT family J4N44_18420 PF03315 Serine dehydratase beta chain J4N44_18420 PF03313 Serine dehydratase alpha chain J4N44_18445 PF01464 Transglycosylase SLT domain J4N44_18445 PF01476 LysM domain J4N44_18465 PF00460 Flagella basal body rod protein J4N44_18470 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N44_18470 PF00460 Flagella basal body rod protein J4N44_18475 PF13861 FlgD Tudor-like domain J4N44_18475 PF03963 Flagellar hook capping protein - N-terminal region J4N44_18475 PF13860 FlgD Ig-like domain J4N44_18480 PF00460 Flagella basal body rod protein J4N44_18480 PF07559 Flagellar basal body protein FlaE J4N44_18480 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N44_18485 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N44_18485 PF00460 Flagella basal body rod protein J4N44_18490 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N44_18490 PF00460 Flagella basal body rod protein J4N44_18495 PF02107 Flagellar L-ring protein J4N44_18500 PF02119 Flagellar P-ring protein J4N44_18505 PF10135 Rod binding protein J4N44_18505 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase J4N44_18510 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J4N44_18510 PF00460 Flagella basal body rod protein J4N44_18515 PF00669 Bacterial flagellin N-terminal helical region J4N44_18535 PF01070 FMN-dependent dehydrogenase J4N44_18550 PF08241 Methyltransferase domain J4N44_18570 PF03239 Iron permease FTR1 family J4N44_18575 PF10634 Fe2+ transport protein J4N44_18585 PF12704 MacB-like periplasmic core domain J4N44_18585 PF02687 FtsX-like permease family J4N44_18585 PF00005 ABC transporter J4N44_18595 PF00005 ABC transporter J4N44_18600 PF00578 AhpC/TSA family J4N44_18610 PF04205 FMN-binding domain J4N44_18625 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N44_18635 PF08000 Bacterial PH domain J4N44_18660 PF13677 Membrane MotB of proton-channel complex MotA/MotB J4N44_18660 PF00691 OmpA family J4N44_18665 PF01618 MotA/TolQ/ExbB proton channel family J4N44_18670 PF04542 Sigma-70 region 2 J4N44_18670 PF04545 Sigma-70, region 4 J4N44_18675 PF03748 Flagellar basal body-associated protein FliL J4N44_18690 PF02561 Flagellar protein FliS J4N44_18695 PF02465 Flagellar hook-associated protein 2 N-terminus J4N44_18695 PF07195 Flagellar hook-associated protein 2 C-terminus J4N44_18695 PF07196 Flagellin hook IN motif J4N44_18705 PF00700 Bacterial flagellin C-terminal helical region J4N44_18705 PF00669 Bacterial flagellin N-terminal helical region J4N44_18715 PF00771 FHIPEP family J4N44_18720 PF01312 FlhB HrpN YscU SpaS Family J4N44_18725 PF01311 Bacterial export proteins, family 1 J4N44_18730 PF01313 Bacterial export proteins, family 3 J4N44_18735 PF00813 FliP family J4N44_18740 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J4N44_18755 PF00158 Sigma-54 interaction domain J4N44_18755 PF02954 Bacterial regulatory protein, Fis family J4N44_18755 PF00072 Response regulator receiver domain J4N44_18760 PF02049 Flagellar hook-basal body complex protein FliE J4N44_18765 PF01514 Secretory protein of YscJ/FliF family J4N44_18765 PF08345 Flagellar M-ring protein C-terminal J4N44_18770 PF01706 FliG C-terminal domain J4N44_18770 PF14841 FliG middle domain J4N44_18770 PF14842 FliG N-terminal domain J4N44_18780 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N44_18780 PF18269 T3SS EscN ATPase C-terminal domain J4N44_18790 PF00563 EAL domain J4N44_18790 PF05231 MASE1 J4N44_18800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_18800 PF03466 LysR substrate binding domain J4N44_18810 PF00419 Fimbrial protein J4N44_18815 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain J4N44_18815 PF02753 Pili assembly chaperone PapD, C-terminal domain J4N44_18820 PF00577 Outer membrane usher protein J4N44_18820 PF13954 PapC N-terminal domain J4N44_18820 PF13953 PapC C-terminal domain J4N44_18875 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N44_18880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_18880 PF03466 LysR substrate binding domain J4N44_18900 PF00072 Response regulator receiver domain J4N44_18900 PF00486 Transcriptional regulatory protein, C terminal J4N44_18905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_18905 PF00512 His Kinase A (phospho-acceptor) domain J4N44_18905 PF00072 Response regulator receiver domain J4N44_18905 PF13426 PAS domain J4N44_18905 PF08448 PAS fold J4N44_18910 PF00266 Aminotransferase class-V J4N44_18915 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N44_18920 PF03707 Bacterial signalling protein N terminal repeat J4N44_18920 PF00563 EAL domain J4N44_18920 PF00990 Diguanylate cyclase, GGDEF domain J4N44_18925 PF00155 Aminotransferase class I and II J4N44_18930 PF08240 Alcohol dehydrogenase GroES-like domain J4N44_18930 PF00107 Zinc-binding dehydrogenase J4N44_18940 PF00293 NUDIX domain J4N44_18950 PF00194 Eukaryotic-type carbonic anhydrase J4N44_18955 PF09278 MerR, DNA binding J4N44_18955 PF00376 MerR family regulatory protein J4N44_18985 PF13091 PLD-like domain J4N44_18990 PF13533 Biotin-lipoyl like J4N44_18995 PF00873 AcrB/AcrD/AcrF family J4N44_19005 PF00873 AcrB/AcrD/AcrF family J4N44_19030 PF08218 Citrate lyase ligase C-terminal domain J4N44_19040 PF00501 AMP-binding enzyme J4N44_19040 PF13193 AMP-binding enzyme C-terminal domain J4N44_19045 PF02028 BCCT, betaine/carnitine/choline family transporter J4N44_19050 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J4N44_19050 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 J4N44_19050 PF02837 Glycosyl hydrolases family 2, sugar binding domain J4N44_19050 PF00703 Glycosyl hydrolases family 2 J4N44_19055 PF00196 Bacterial regulatory proteins, luxR family J4N44_19065 PF00990 Diguanylate cyclase, GGDEF domain J4N44_19065 PF00563 EAL domain J4N44_19065 PF03707 Bacterial signalling protein N terminal repeat J4N44_19075 PF03616 Sodium/glutamate symporter J4N44_19080 PF02600 Disulfide bond formation protein DsbB J4N44_19090 PF02321 Outer membrane efflux protein J4N44_19095 PF00873 AcrB/AcrD/AcrF family J4N44_19100 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N44_19105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_19105 PF03466 LysR substrate binding domain J4N44_19120 PF00579 tRNA synthetases class I (W and Y) J4N44_19125 PF00196 Bacterial regulatory proteins, luxR family J4N44_19125 PF00072 Response regulator receiver domain J4N44_19135 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain J4N44_19135 PF00391 PEP-utilising enzyme, mobile domain J4N44_19135 PF02896 PEP-utilising enzyme, TIM barrel domain J4N44_19140 PF03618 Kinase/pyrophosphorylase J4N44_19145 PF00710 Asparaginase, N-terminal J4N44_19145 PF17763 Glutaminase/Asparaginase C-terminal domain J4N44_19150 PF00990 Diguanylate cyclase, GGDEF domain J4N44_19150 PF13185 GAF domain J4N44_19150 PF00563 EAL domain J4N44_19155 PF00709 Adenylosuccinate synthetase J4N44_19160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_19160 PF03466 LysR substrate binding domain J4N44_19180 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) J4N44_19195 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J4N44_19205 PF07690 Major Facilitator Superfamily J4N44_19215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_19215 PF03466 LysR substrate binding domain J4N44_19235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_19235 PF03466 LysR substrate binding domain J4N44_19245 PF00271 Helicase conserved C-terminal domain J4N44_19245 PF00270 DEAD/DEAH box helicase J4N44_19255 PF00535 Glycosyl transferase family 2 J4N44_19265 PF03099 Biotin/lipoate A/B protein ligase family J4N44_19285 PF00155 Aminotransferase class I and II J4N44_19290 PF01497 Periplasmic binding protein J4N44_19290 PF12833 Helix-turn-helix domain J4N44_19295 PF03466 LysR substrate binding domain J4N44_19295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_19305 PF13419 Haloacid dehalogenase-like hydrolase J4N44_19310 PF01590 GAF domain J4N44_19310 PF00158 Sigma-54 interaction domain J4N44_19315 PF00258 Flavodoxin J4N44_19315 PF00753 Metallo-beta-lactamase superfamily J4N44_19315 PF00301 Rubredoxin J4N44_19320 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N44_19320 PF18113 Rubredoxin binding C-terminal domain J4N44_19335 PF11742 Protein of unknown function (DUF3302) J4N44_19340 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N44_19340 PF00529 HlyD membrane-fusion protein of T1SS J4N44_19345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_19345 PF03466 LysR substrate binding domain J4N44_19355 PF01238 Phosphomannose isomerase type I J4N44_19360 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N44_19360 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N44_19365 PF12833 Helix-turn-helix domain J4N44_19375 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N44_19385 PF03466 LysR substrate binding domain J4N44_19385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_19395 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J4N44_19395 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J4N44_19400 PF00199 Catalase J4N44_19400 PF06628 Catalase-related immune-responsive J4N44_19410 PF00107 Zinc-binding dehydrogenase J4N44_19410 PF16884 N-terminal domain of oxidoreductase J4N44_19415 PF00440 Bacterial regulatory proteins, tetR family J4N44_19415 PF16925 Tetracyclin repressor-like, C-terminal domain J4N44_19420 PF04266 ASCH domain J4N44_19450 PF00534 Glycosyl transferases group 1 J4N44_19450 PF13439 Glycosyltransferase Family 4 J4N44_19460 PF13807 G-rich domain on putative tyrosine kinase J4N44_19460 PF13614 AAA domain J4N44_19460 PF02706 Chain length determinant protein J4N44_19475 PF02397 Bacterial sugar transferase J4N44_19480 PF00005 ABC transporter J4N44_19480 PF08402 TOBE domain J4N44_19485 PF01547 Bacterial extracellular solute-binding protein J4N44_19490 PF14785 Maltose transport system permease protein MalF P2 domain J4N44_19490 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_19495 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_19540 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain J4N44_19540 PF01464 Transglycosylase SLT domain J4N44_19555 PF12833 Helix-turn-helix domain J4N44_19555 PF00072 Response regulator receiver domain J4N44_19565 PF05661 Protein of unknown function (DUF808) J4N44_19570 PF01979 Amidohydrolase family J4N44_19575 PF01679 Proteolipid membrane potential modulator J4N44_19580 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N44_19580 PF03473 MOSC domain J4N44_19580 PF00111 2Fe-2S iron-sulfur cluster binding domain J4N44_19580 PF03476 MOSC N-terminal beta barrel domain J4N44_19580 PF03476 MOSC N-terminal beta barrel domain J4N44_19580 PF03473 MOSC domain J4N44_19585 PF02540 NAD synthase J4N44_19590 PF01467 Cytidylyltransferase-like J4N44_19630 PF03466 LysR substrate binding domain J4N44_19630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_19660 PF00857 Isochorismatase family J4N44_19665 PF01965 DJ-1/PfpI family J4N44_19665 PF12833 Helix-turn-helix domain J4N44_19670 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J4N44_19680 PF00884 Sulfatase J4N44_19680 PF08019 Phosphoethanolamine transferase EptA/EptB J4N44_19685 PF01219 Prokaryotic diacylglycerol kinase J4N44_19695 PF00672 HAMP domain J4N44_19695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_19695 PF00512 His Kinase A (phospho-acceptor) domain J4N44_19700 PF00486 Transcriptional regulatory protein, C terminal J4N44_19700 PF00072 Response regulator receiver domain J4N44_19705 PF02028 BCCT, betaine/carnitine/choline family transporter J4N44_19710 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J4N44_19710 PF13378 Enolase C-terminal domain-like J4N44_19715 PF04205 FMN-binding domain J4N44_19715 PF00890 FAD binding domain J4N44_19720 PF07729 FCD domain J4N44_19720 PF00392 Bacterial regulatory proteins, gntR family J4N44_19725 PF00114 Pilin (bacterial filament) J4N44_19725 PF07963 Prokaryotic N-terminal methylation motif J4N44_19730 PF00106 short chain dehydrogenase J4N44_19745 PF01323 DSBA-like thioredoxin domain J4N44_19760 PF00255 Glutathione peroxidase J4N44_19765 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase J4N44_19775 PF07690 Major Facilitator Superfamily J4N44_19790 PF01966 HD domain J4N44_19805 PF07969 Amidohydrolase family J4N44_19810 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin J4N44_19815 PF01769 Divalent cation transporter J4N44_19815 PF03448 MgtE intracellular N domain J4N44_19815 PF00571 CBS domain J4N44_19820 PF03109 ABC1 family J4N44_19825 PF00529 HlyD membrane-fusion protein of T1SS J4N44_19825 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N44_19850 PF00072 Response regulator receiver domain J4N44_19850 PF00486 Transcriptional regulatory protein, C terminal J4N44_19855 PF16527 Two-component sensor protein CpxA, periplasmic domain J4N44_19855 PF00512 His Kinase A (phospho-acceptor) domain J4N44_19855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_19855 PF00672 HAMP domain J4N44_19865 PF00155 Aminotransferase class I and II J4N44_19865 PF00392 Bacterial regulatory proteins, gntR family J4N44_19870 PF13520 Amino acid permease J4N44_19875 PF13404 AsnC-type helix-turn-helix domain J4N44_19875 PF01037 Lrp/AsnC ligand binding domain J4N44_19885 PF03466 LysR substrate binding domain J4N44_19885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_19900 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J4N44_19900 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J4N44_19905 PF00672 HAMP domain J4N44_19905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_19905 PF00512 His Kinase A (phospho-acceptor) domain J4N44_19905 PF01627 Hpt domain J4N44_19905 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J4N44_19905 PF00072 Response regulator receiver domain J4N44_19910 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J4N44_19915 PF01554 MatE J4N44_19920 PF04363 Protein of unknown function (DUF496) J4N44_19930 PF04337 Protein of unknown function, DUF480 J4N44_19935 PF01541 GIY-YIG catalytic domain J4N44_19940 PF13407 Periplasmic binding protein domain J4N44_19945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_19945 PF00512 His Kinase A (phospho-acceptor) domain J4N44_19945 PF00072 Response regulator receiver domain J4N44_19945 PF09308 LuxQ, periplasmic J4N44_19960 PF01037 Lrp/AsnC ligand binding domain J4N44_19985 PF02355 Protein export membrane protein J4N44_19985 PF13721 SecD export protein N-terminal TM region J4N44_19985 PF07549 SecD/SecF GG Motif J4N44_19990 PF02355 Protein export membrane protein J4N44_19990 PF07549 SecD/SecF GG Motif J4N44_20000 PF01810 LysE type translocator J4N44_20005 PF00106 short chain dehydrogenase J4N44_20010 PF00108 Thiolase, N-terminal domain J4N44_20010 PF02803 Thiolase, C-terminal domain J4N44_20020 PF00561 alpha/beta hydrolase fold J4N44_20020 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus J4N44_20030 PF03264 NapC/NirT cytochrome c family, N-terminal region J4N44_20035 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) J4N44_20040 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J4N44_20040 PF00384 Molybdopterin oxidoreductase J4N44_20040 PF01568 Molydopterin dinucleotide binding domain J4N44_20050 PF13187 4Fe-4S dicluster domain J4N44_20050 PF12838 4Fe-4S dicluster domain J4N44_20055 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term J4N44_20055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_20055 PF07730 Histidine kinase J4N44_20055 PF00672 HAMP domain J4N44_20060 PF00196 Bacterial regulatory proteins, luxR family J4N44_20060 PF00072 Response regulator receiver domain J4N44_20075 PF01546 Peptidase family M20/M25/M40 J4N44_20075 PF07687 Peptidase dimerisation domain J4N44_20080 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J4N44_20085 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N44_20090 PF00873 AcrB/AcrD/AcrF family J4N44_20095 PF12729 Four helix bundle sensory module for signal transduction J4N44_20095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N44_20095 PF00672 HAMP domain J4N44_20100 PF00472 RF-1 domain J4N44_20105 PF13419 Haloacid dehalogenase-like hydrolase J4N44_20110 PF00196 Bacterial regulatory proteins, luxR family J4N44_20110 PF00072 Response regulator receiver domain J4N44_20135 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N44_20135 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J4N44_20145 PF13488 Glycine zipper J4N44_20145 PF00691 OmpA family J4N44_20165 PF00313 'Cold-shock' DNA-binding domain J4N44_20170 PF03889 Alternative ribosome-rescue factor A J4N44_20180 PF00990 Diguanylate cyclase, GGDEF domain J4N44_20195 PF02687 FtsX-like permease family J4N44_20195 PF12704 MacB-like periplasmic core domain J4N44_20195 PF00005 ABC transporter J4N44_20200 PF00005 ABC transporter J4N44_20200 PF02687 FtsX-like permease family J4N44_20200 PF12704 MacB-like periplasmic core domain J4N44_20210 PF04539 Sigma-70 region 3 J4N44_20210 PF04545 Sigma-70, region 4 J4N44_20210 PF00140 Sigma-70 factor, region 1.2 J4N44_20210 PF04542 Sigma-70 region 2 J4N44_20220 PF00005 ABC transporter J4N44_20225 PF00664 ABC transporter transmembrane region J4N44_20225 PF00005 ABC transporter J4N44_20230 PF02321 Outer membrane efflux protein J4N44_20235 PF00072 Response regulator receiver domain J4N44_20235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_20240 PF13533 Biotin-lipoyl like J4N44_20260 PF17200 Single Cache domain 2 J4N44_20260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N44_20260 PF00672 HAMP domain J4N44_20265 PF00210 Ferritin-like domain J4N44_20275 PF17676 LD-carboxypeptidase C-terminal domain J4N44_20275 PF02016 LD-carboxypeptidase N-terminal domain J4N44_20280 PF07995 Glucose / Sorbosone dehydrogenase J4N44_20285 PF00465 Iron-containing alcohol dehydrogenase J4N44_20300 PF00892 EamA-like transporter family J4N44_20310 PF03466 LysR substrate binding domain J4N44_20310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_20320 PF00501 AMP-binding enzyme J4N44_20320 PF13193 AMP-binding enzyme C-terminal domain J4N44_20325 PF00351 Biopterin-dependent aromatic amino acid hydroxylase J4N44_20330 PF01329 Pterin 4 alpha carbinolamine dehydratase J4N44_20355 PF12843 Putative quorum-sensing-regulated virulence factor J4N44_20390 PF12805 FUSC-like inner membrane protein yccS J4N44_20395 PF12462 DNA helicase IV / RNA helicase N terminal J4N44_20395 PF00580 UvrD/REP helicase N-terminal domain J4N44_20395 PF13361 UvrD-like helicase C-terminal domain J4N44_20400 PF02142 MGS-like domain J4N44_20405 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family J4N44_20410 PF00072 Response regulator receiver domain J4N44_20410 PF00512 His Kinase A (phospho-acceptor) domain J4N44_20410 PF00672 HAMP domain J4N44_20410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_20410 PF01627 Hpt domain J4N44_20430 PF00672 HAMP domain J4N44_20430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_20430 PF00512 His Kinase A (phospho-acceptor) domain J4N44_20430 PF16750 Sensor domain of 2-component histidine kinase J4N44_20435 PF00072 Response regulator receiver domain J4N44_20435 PF00486 Transcriptional regulatory protein, C terminal J4N44_20440 PF00884 Sulfatase J4N44_20445 PF00884 Sulfatase J4N44_20455 PF03466 LysR substrate binding domain J4N44_20455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_20460 PF00884 Sulfatase J4N44_20465 PF04055 Radical SAM superfamily J4N44_20465 PF13186 Iron-sulfur cluster-binding domain J4N44_20470 PF17863 AAA lid domain J4N44_20470 PF07726 ATPase family associated with various cellular activities (AAA) J4N44_20485 PF00092 von Willebrand factor type A domain J4N44_20505 PF00119 ATP synthase A chain J4N44_20510 PF00137 ATP synthase subunit C J4N44_20515 PF00430 ATP synthase B/B' CF(0) J4N44_20520 PF00213 ATP synthase delta (OSCP) subunit J4N44_20525 PF02874 ATP synthase alpha/beta family, beta-barrel domain J4N44_20525 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N44_20525 PF00306 ATP synthase alpha/beta chain, C terminal domain J4N44_20530 PF00231 ATP synthase J4N44_20535 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J4N44_20535 PF02874 ATP synthase alpha/beta family, beta-barrel domain J4N44_20540 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain J4N44_20540 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain J4N44_20545 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J4N44_20545 PF01872 RibD C-terminal domain J4N44_20550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_20550 PF03466 LysR substrate binding domain J4N44_20555 PF00781 Diacylglycerol kinase catalytic domain J4N44_20560 PF04076 Bacterial OB fold (BOF) protein J4N44_20575 PF03781 Sulfatase-modifying factor enzyme 1 J4N44_20580 PF04055 Radical SAM superfamily J4N44_20580 PF13186 Iron-sulfur cluster-binding domain J4N44_20590 PF18081 Fanconi anemia-associated nuclease SAP domain J4N44_20590 PF08774 VRR-NUC domain J4N44_20605 PF01435 Peptidase family M48 J4N44_20610 PF04011 LemA family J4N44_20615 PF03606 C4-dicarboxylate anaerobic carrier J4N44_20635 PF00072 Response regulator receiver domain J4N44_20635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_20640 PF00155 Aminotransferase class I and II J4N44_20645 PF01926 50S ribosome-binding GTPase J4N44_20650 PF01551 Peptidase family M23 J4N44_20650 PF08525 Opacity-associated protein A N-terminal motif J4N44_20650 PF01476 LysM domain J4N44_20670 PF00691 OmpA family J4N44_20675 PF02954 Bacterial regulatory protein, Fis family J4N44_20675 PF00072 Response regulator receiver domain J4N44_20675 PF00158 Sigma-54 interaction domain J4N44_20680 PF00004 ATPase family associated with various cellular activities (AAA) J4N44_20680 PF07724 AAA domain (Cdc48 subfamily) J4N44_20680 PF17871 AAA lid domain J4N44_20680 PF10431 C-terminal, D2-small domain, of ClpB protein J4N44_20685 PF05638 Type VI secretion system effector, Hcp J4N44_20690 PF04717 Type VI secretion system, phage-baseplate injector J4N44_20715 PF00069 Protein kinase domain J4N44_20730 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath J4N44_20740 PF05947 Type VI secretion system, TssF J4N44_20750 PF01037 Lrp/AsnC ligand binding domain J4N44_20780 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE J4N44_20820 PF13181 Tetratricopeptide repeat J4N44_20820 PF17128 Domain of unknown function (DUF5107) J4N44_20825 PF00083 Sugar (and other) transporter J4N44_20830 PF00480 ROK family J4N44_20835 PF01263 Aldose 1-epimerase J4N44_20840 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J4N44_20840 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain J4N44_20845 PF06276 Ferric iron reductase FhuF-like transporter J4N44_20845 PF04183 IucA / IucC family J4N44_20860 PF02655 ATP-grasp domain J4N44_20860 PF00206 Lyase J4N44_20865 PF00593 TonB dependent receptor J4N44_20865 PF07715 TonB-dependent Receptor Plug Domain J4N44_20870 PF00593 TonB dependent receptor J4N44_20870 PF07715 TonB-dependent Receptor Plug Domain J4N44_20870 PF07660 Secretin and TonB N terminus short domain J4N44_20875 PF01497 Periplasmic binding protein J4N44_20880 PF01032 FecCD transport family J4N44_20885 PF01032 FecCD transport family J4N44_20890 PF00005 ABC transporter J4N44_20895 PF00593 TonB dependent receptor J4N44_20895 PF07715 TonB-dependent Receptor Plug Domain J4N44_20905 PF00990 Diguanylate cyclase, GGDEF domain J4N44_20905 PF08447 PAS fold J4N44_20905 PF08448 PAS fold J4N44_20905 PF00563 EAL domain J4N44_20910 PF00486 Transcriptional regulatory protein, C terminal J4N44_20910 PF00072 Response regulator receiver domain J4N44_20915 PF18698 Histidine kinase sensor domain J4N44_20915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_20915 PF00672 HAMP domain J4N44_20915 PF00989 PAS fold J4N44_20915 PF00512 His Kinase A (phospho-acceptor) domain J4N44_20920 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_20925 PF12911 N-terminal TM domain of oligopeptide transport permease C J4N44_20925 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_20930 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N44_20935 PF00005 ABC transporter J4N44_20935 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N44_20940 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N44_20940 PF00005 ABC transporter J4N44_20955 PF00512 His Kinase A (phospho-acceptor) domain J4N44_20955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_20955 PF00072 Response regulator receiver domain J4N44_20955 PF09456 RcsC Alpha-Beta-Loop (ABL) J4N44_20960 PF13188 PAS domain J4N44_20960 PF03707 Bacterial signalling protein N terminal repeat J4N44_20960 PF00990 Diguanylate cyclase, GGDEF domain J4N44_20960 PF00563 EAL domain J4N44_20965 PF00072 Response regulator receiver domain J4N44_20965 PF00196 Bacterial regulatory proteins, luxR family J4N44_20970 PF00990 Diguanylate cyclase, GGDEF domain J4N44_20975 PF03466 LysR substrate binding domain J4N44_20975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_20980 PF00072 Response regulator receiver domain J4N44_20980 PF00196 Bacterial regulatory proteins, luxR family J4N44_20985 PF00672 HAMP domain J4N44_20985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N44_20990 PF00881 Nitroreductase family J4N44_20995 PF00072 Response regulator receiver domain J4N44_20995 PF01584 CheW-like domain J4N44_21000 PF07963 Prokaryotic N-terminal methylation motif J4N44_21010 PF00892 EamA-like transporter family J4N44_21025 PF00034 Cytochrome c J4N44_21025 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J4N44_21035 PF00115 Cytochrome C and Quinol oxidase polypeptide I J4N44_21040 PF00034 Cytochrome c J4N44_21060 PF00682 HMGL-like J4N44_21065 PF00378 Enoyl-CoA hydratase/isomerase J4N44_21070 PF01039 Carboxyl transferase domain J4N44_21075 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J4N44_21075 PF02770 Acyl-CoA dehydrogenase, middle domain J4N44_21075 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J4N44_21080 PF09278 MerR, DNA binding J4N44_21080 PF00376 MerR family regulatory protein J4N44_21085 PF00108 Thiolase, N-terminal domain J4N44_21085 PF02803 Thiolase, C-terminal domain J4N44_21090 PF00171 Aldehyde dehydrogenase family J4N44_21095 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J4N44_21095 PF02770 Acyl-CoA dehydrogenase, middle domain J4N44_21095 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J4N44_21100 PF00378 Enoyl-CoA hydratase/isomerase J4N44_21105 PF00378 Enoyl-CoA hydratase/isomerase J4N44_21110 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J4N44_21110 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J4N44_21120 PF00116 Cytochrome C oxidase subunit II, periplasmic domain J4N44_21120 PF06481 COX Aromatic Rich Motif J4N44_21125 PF00115 Cytochrome C and Quinol oxidase polypeptide I J4N44_21130 PF00510 Cytochrome c oxidase subunit III J4N44_21135 PF03626 Prokaryotic Cytochrome C oxidase subunit IV J4N44_21140 PF01040 UbiA prenyltransferase family J4N44_21155 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J4N44_21155 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N44_21160 PF01569 PAP2 superfamily J4N44_21170 PF00893 Small Multidrug Resistance protein J4N44_21175 PF00892 EamA-like transporter family J4N44_21195 PF00171 Aldehyde dehydrogenase family J4N44_21200 PF00664 ABC transporter transmembrane region J4N44_21200 PF00005 ABC transporter J4N44_21215 PF01638 HxlR-like helix-turn-helix J4N44_21225 PF11490 DNA polymerase III polC-type N-terminus II J4N44_21225 PF00929 Exonuclease J4N44_21225 PF02811 PHP domain J4N44_21225 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J4N44_21225 PF07733 Bacterial DNA polymerase III alpha NTPase domain J4N44_21225 PF14579 Helix-hairpin-helix motif J4N44_21240 PF03466 LysR substrate binding domain J4N44_21240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_21245 PF01039 Carboxyl transferase domain J4N44_21245 PF17848 Acetyl-coA carboxylase zinc finger domain J4N44_21275 PF00270 DEAD/DEAH box helicase J4N44_21275 PF08494 DEAD/H associated J4N44_21275 PF00271 Helicase conserved C-terminal domain J4N44_21280 PF02347 Glycine cleavage system P-protein J4N44_21285 PF01597 Glycine cleavage H-protein J4N44_21290 PF00464 Serine hydroxymethyltransferase J4N44_21300 PF08669 Glycine cleavage T-protein C-terminal barrel domain J4N44_21300 PF01571 Aminomethyltransferase folate-binding domain J4N44_21310 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N44_21315 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N44_21320 PF00873 AcrB/AcrD/AcrF family J4N44_21345 PF02378 Phosphotransferase system, EIIC J4N44_21345 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N44_21350 PF00294 pfkB family carbohydrate kinase J4N44_21355 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N44_21355 PF00381 PTS HPr component phosphorylation site J4N44_21360 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family J4N44_21360 PF00356 Bacterial regulatory proteins, lacI family J4N44_21375 PF00989 PAS fold J4N44_21375 PF00990 Diguanylate cyclase, GGDEF domain J4N44_21375 PF01590 GAF domain J4N44_21375 PF00563 EAL domain J4N44_21380 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_21385 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N44_21390 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_21395 PF00005 ABC transporter J4N44_21405 PF00465 Iron-containing alcohol dehydrogenase J4N44_21410 PF12833 Helix-turn-helix domain J4N44_21410 PF06719 AraC-type transcriptional regulator N-terminus J4N44_21415 PF06483 Chitinase C J4N44_21415 PF00704 Glycosyl hydrolases family 18 J4N44_21420 PF00483 Nucleotidyl transferase J4N44_21425 PF01268 Formate--tetrahydrofolate ligase J4N44_21430 PF00294 pfkB family carbohydrate kinase J4N44_21445 PF11849 Domain of unknown function (DUF3369) J4N44_21450 PF13419 Haloacid dehalogenase-like hydrolase J4N44_21455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N44_21455 PF00672 HAMP domain J4N44_21460 PF04336 Acyl carrier protein phosphodiesterase J4N44_21465 PF00270 DEAD/DEAH box helicase J4N44_21465 PF00271 Helicase conserved C-terminal domain J4N44_21470 PF12792 CSS motif domain associated with EAL J4N44_21470 PF00563 EAL domain J4N44_21485 PF01292 Prokaryotic cytochrome b561 J4N44_21490 PF04264 YceI-like domain J4N44_21495 PF01226 Formate/nitrite transporter J4N44_21500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_21500 PF03466 LysR substrate binding domain J4N44_21505 PF06496 Protein of unknown function (DUF1097) J4N44_21510 PF11398 Protein of unknown function (DUF2813) J4N44_21515 PF02872 5'-nucleotidase, C-terminal domain J4N44_21515 PF00149 Calcineurin-like phosphoesterase J4N44_21520 PF03741 Integral membrane protein TerC family J4N44_21535 PF02310 B12 binding domain J4N44_21535 PF02574 Homocysteine S-methyltransferase J4N44_21535 PF00809 Pterin binding enzyme J4N44_21535 PF02607 B12 binding domain J4N44_21535 PF02965 Vitamin B12 dependent methionine synthase, activation domain J4N44_21550 PF12262 Bacterial virulence factor lipase N-terminal J4N44_21555 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J4N44_21570 PF03061 Thioesterase superfamily J4N44_21580 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N44_21580 PF12793 Sugar transport-related sRNA regulator N-term J4N44_21605 PF00226 DnaJ domain J4N44_21605 PF01556 DnaJ C terminal domain J4N44_21605 PF00684 DnaJ central domain J4N44_21615 PF00563 EAL domain J4N44_21615 PF13188 PAS domain J4N44_21615 PF03707 Bacterial signalling protein N terminal repeat J4N44_21615 PF00990 Diguanylate cyclase, GGDEF domain J4N44_21620 PF12241 Trans-2-enoyl-CoA reductase catalytic region J4N44_21620 PF07055 Enoyl reductase FAD binding domain J4N44_21620 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase J4N44_21625 PF13472 GDSL-like Lipase/Acylhydrolase family J4N44_21630 PF00005 ABC transporter J4N44_21645 PF02626 Carboxyltransferase domain, subdomain A and B J4N44_21655 PF03746 LamB/YcsF family J4N44_21660 PF05231 MASE1 J4N44_21660 PF08447 PAS fold J4N44_21660 PF00990 Diguanylate cyclase, GGDEF domain J4N44_21660 PF13426 PAS domain J4N44_21660 PF08448 PAS fold J4N44_21660 PF00563 EAL domain J4N44_21665 PF16363 GDP-mannose 4,6 dehydratase J4N44_21670 PF07715 TonB-dependent Receptor Plug Domain J4N44_21670 PF04886 PT repeat J4N44_21670 PF00593 TonB dependent receptor J4N44_21675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_21675 PF03466 LysR substrate binding domain J4N44_21680 PF07715 TonB-dependent Receptor Plug Domain J4N44_21680 PF04886 PT repeat J4N44_21680 PF00593 TonB dependent receptor J4N44_21685 PF13380 CoA binding domain J4N44_21685 PF00583 Acetyltransferase (GNAT) family J4N44_21685 PF13607 Succinyl-CoA ligase like flavodoxin domain J4N44_21690 PF05036 Sporulation related domain J4N44_21705 PF01253 Translation initiation factor SUI1 J4N44_21730 PF03701 Uncharacterised protein family (UPF0181) J4N44_21745 PF00486 Transcriptional regulatory protein, C terminal J4N44_21745 PF00072 Response regulator receiver domain J4N44_21755 PF02233 NAD(P) transhydrogenase beta subunit J4N44_21760 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch J4N44_21760 PF05222 Alanine dehydrogenase/PNT, N-terminal domain J4N44_21760 PF01262 Alanine dehydrogenase/PNT, C-terminal domain J4N44_21775 PF00990 Diguanylate cyclase, GGDEF domain J4N44_21790 PF00360 Phytochrome region J4N44_21790 PF00563 EAL domain J4N44_21790 PF01590 GAF domain J4N44_21790 PF00990 Diguanylate cyclase, GGDEF domain J4N44_21800 PF03459 TOBE domain J4N44_21800 PF00005 ABC transporter J4N44_21805 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_21815 PF07685 CobB/CobQ-like glutamine amidotransferase domain J4N44_21815 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J4N44_21820 PF04076 Bacterial OB fold (BOF) protein J4N44_21830 PF18030 RimK PreATP-grasp domain J4N44_21830 PF08443 RimK-like ATP-grasp domain J4N44_21835 PF00155 Aminotransferase class I and II J4N44_21840 PF12833 Helix-turn-helix domain J4N44_21845 PF01554 MatE J4N44_21855 PF13597 Anaerobic ribonucleoside-triphosphate reductase J4N44_21855 PF03477 ATP cone domain J4N44_21870 PF04143 Sulphur transport J4N44_21880 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N44_21880 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J4N44_21910 PF07690 Major Facilitator Superfamily J4N44_21915 PF00196 Bacterial regulatory proteins, luxR family J4N44_21915 PF00072 Response regulator receiver domain J4N44_21920 PF07730 Histidine kinase J4N44_21920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_21920 PF05231 MASE1 J4N44_21925 PF07690 Major Facilitator Superfamily J4N44_21930 PF01238 Phosphomannose isomerase type I J4N44_21940 PF01594 AI-2E family transporter J4N44_21950 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N44_21950 PF00529 HlyD membrane-fusion protein of T1SS J4N44_21975 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J4N44_21975 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J4N44_21980 PF00085 Thioredoxin J4N44_21985 PF07690 Major Facilitator Superfamily J4N44_21990 PF07495 Y_Y_Y domain J4N44_21990 PF00512 His Kinase A (phospho-acceptor) domain J4N44_21990 PF12833 Helix-turn-helix domain J4N44_21990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_21990 PF00072 Response regulator receiver domain J4N44_21990 PF07494 Two component regulator propeller J4N44_22000 PF11756 Nitrous oxide-stimulated promoter J4N44_22015 PF07715 TonB-dependent Receptor Plug Domain J4N44_22015 PF00593 TonB dependent receptor J4N44_22025 PF03605 Anaerobic c4-dicarboxylate membrane transporter J4N44_22040 PF10414 Sirohaem synthase dimerisation region J4N44_22040 PF14824 Sirohaem biosynthesis protein central J4N44_22040 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N44_22045 PF01226 Formate/nitrite transporter J4N44_22050 PF13806 Rieske-like [2Fe-2S] domain J4N44_22055 PF18267 Rubredoxin NAD+ reductase C-terminal domain J4N44_22055 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N44_22055 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain J4N44_22055 PF04324 BFD-like [2Fe-2S] binding domain J4N44_22055 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J4N44_22060 PF00563 EAL domain J4N44_22060 PF13426 PAS domain J4N44_22060 PF00990 Diguanylate cyclase, GGDEF domain J4N44_22090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N44_22090 PF00672 HAMP domain J4N44_22105 PF09154 Domain of unknown function (DUF1939) J4N44_22105 PF00128 Alpha amylase, catalytic domain J4N44_22130 PF13462 Thioredoxin J4N44_22140 PF09330 D-lactate dehydrogenase, membrane binding J4N44_22140 PF01565 FAD binding domain J4N44_22145 PF03466 LysR substrate binding domain J4N44_22145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_22155 PF05762 VWA domain containing CoxE-like protein J4N44_22160 PF07728 AAA domain (dynein-related subfamily) J4N44_22160 PF12592 Protein of unknown function (DUF3763) J4N44_22160 PF17868 AAA lid domain J4N44_22170 PF01212 Beta-eliminating lyase J4N44_22175 PF00034 Cytochrome c J4N44_22180 PF03606 C4-dicarboxylate anaerobic carrier J4N44_22190 PF07690 Major Facilitator Superfamily J4N44_22200 PF08212 Lipocalin-like domain J4N44_22230 PF00704 Glycosyl hydrolases family 18 J4N44_22240 PF13476 AAA domain J4N44_22245 PF00149 Calcineurin-like phosphoesterase J4N44_22245 PF12320 Type 5 capsule protein repressor C-terminal domain J4N44_22270 PF03527 RHS protein J4N44_22285 PF04717 Type VI secretion system, phage-baseplate injector J4N44_22295 PF17871 AAA lid domain J4N44_22295 PF00004 ATPase family associated with various cellular activities (AAA) J4N44_22295 PF07724 AAA domain (Cdc48 subfamily) J4N44_22295 PF10431 C-terminal, D2-small domain, of ClpB protein J4N44_22305 PF05947 Type VI secretion system, TssF J4N44_22320 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath J4N44_22325 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath J4N44_22330 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 J4N44_22350 PF06761 Intracellular multiplication and human macrophage-killing J4N44_22350 PF14331 ImcF-related N-terminal domain J4N44_22350 PF06744 Type VI secretion protein IcmF C-terminal J4N44_22355 PF13677 Membrane MotB of proton-channel complex MotA/MotB J4N44_22355 PF00691 OmpA family J4N44_22360 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE J4N44_22375 PF03793 PASTA domain J4N44_22375 PF00069 Protein kinase domain J4N44_22400 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N44_22405 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J4N44_22415 PF01757 Acyltransferase family J4N44_22425 PF09722 Protein of unknown function (DUF2384) J4N44_22430 PF13187 4Fe-4S dicluster domain J4N44_22430 PF01645 Conserved region in glutamate synthase J4N44_22440 PF00753 Metallo-beta-lactamase superfamily J4N44_22445 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J4N44_22500 PF12833 Helix-turn-helix domain J4N44_22500 PF00072 Response regulator receiver domain J4N44_22520 PF00990 Diguanylate cyclase, GGDEF domain J4N44_22520 PF00072 Response regulator receiver domain J4N44_22525 PF00378 Enoyl-CoA hydratase/isomerase J4N44_22530 PF01594 AI-2E family transporter J4N44_22535 PF12464 Maltose acetyltransferase J4N44_22535 PF14602 Hexapeptide repeat of succinyl-transferase J4N44_22545 PF00672 HAMP domain J4N44_22545 PF02743 Cache domain J4N44_22545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N44_22555 PF01292 Prokaryotic cytochrome b561 J4N44_22565 PF08525 Opacity-associated protein A N-terminal motif J4N44_22565 PF01476 LysM domain J4N44_22565 PF01551 Peptidase family M23 J4N44_22570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_22570 PF03466 LysR substrate binding domain J4N44_22585 PF00211 Adenylate and Guanylate cyclase catalytic domain J4N44_22585 PF00072 Response regulator receiver domain J4N44_22615 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J4N44_22615 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain J4N44_22615 PF04324 BFD-like [2Fe-2S] binding domain J4N44_22615 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N44_22615 PF13806 Rieske-like [2Fe-2S] domain J4N44_22615 PF18267 Rubredoxin NAD+ reductase C-terminal domain J4N44_22620 PF00005 ABC transporter J4N44_22625 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_22630 PF00005 ABC transporter J4N44_22635 PF03861 ANTAR domain J4N44_22635 PF08376 Nitrate and nitrite sensing J4N44_22640 PF01738 Dienelactone hydrolase family J4N44_22645 PF00591 Glycosyl transferase family, a/b domain J4N44_22645 PF02885 Glycosyl transferase family, helical bundle domain J4N44_22650 PF10414 Sirohaem synthase dimerisation region J4N44_22650 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J4N44_22650 PF14824 Sirohaem biosynthesis protein central J4N44_22655 PF01568 Molydopterin dinucleotide binding domain J4N44_22655 PF00384 Molybdopterin oxidoreductase J4N44_22655 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J4N44_22665 PF00563 EAL domain J4N44_22665 PF00990 Diguanylate cyclase, GGDEF domain J4N44_22665 PF08448 PAS fold J4N44_22670 PF03222 Tryptophan/tyrosine permease family J4N44_22675 PF08448 PAS fold J4N44_22675 PF00990 Diguanylate cyclase, GGDEF domain J4N44_22685 PF00082 Subtilase family J4N44_22685 PF01483 Proprotein convertase P-domain J4N44_22695 PF00245 Alkaline phosphatase J4N44_22710 PF00072 Response regulator receiver domain J4N44_22710 PF00486 Transcriptional regulatory protein, C terminal J4N44_22740 PF04314 Copper chaperone PCu(A)C J4N44_22745 PF00012 Hsp70 protein J4N44_22760 PF00676 Dehydrogenase E1 component J4N44_22765 PF02780 Transketolase, C-terminal domain J4N44_22765 PF02779 Transketolase, pyrimidine binding domain J4N44_22770 PF02817 e3 binding domain J4N44_22770 PF00364 Biotin-requiring enzyme J4N44_22770 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J4N44_22775 PF00766 Electron transfer flavoprotein FAD-binding domain J4N44_22775 PF01012 Electron transfer flavoprotein domain J4N44_22780 PF01012 Electron transfer flavoprotein domain J4N44_22790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_22790 PF03466 LysR substrate binding domain J4N44_22810 PF02424 ApbE family J4N44_22815 PF00890 FAD binding domain J4N44_22815 PF04205 FMN-binding domain J4N44_22815 PF03358 NADPH-dependent FMN reductase J4N44_22820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_22820 PF00512 His Kinase A (phospho-acceptor) domain J4N44_22820 PF00989 PAS fold J4N44_22820 PF16736 Single Cache-like J4N44_22825 PF00072 Response regulator receiver domain J4N44_22825 PF00486 Transcriptional regulatory protein, C terminal J4N44_22840 PF02798 Glutathione S-transferase, N-terminal domain J4N44_22840 PF14497 Glutathione S-transferase, C-terminal domain J4N44_22845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_22845 PF03466 LysR substrate binding domain J4N44_22855 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_22860 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_22865 PF00497 Bacterial extracellular solute-binding proteins, family 3 J4N44_22870 PF00005 ABC transporter J4N44_22875 PF02743 Cache domain J4N44_22875 PF00672 HAMP domain J4N44_22875 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N44_22905 PF02028 BCCT, betaine/carnitine/choline family transporter J4N44_22915 PF00171 Aldehyde dehydrogenase family J4N44_22925 PF03466 LysR substrate binding domain J4N44_22925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_22930 PF00871 Acetokinase family J4N44_22935 PF00563 EAL domain J4N44_22935 PF00990 Diguanylate cyclase, GGDEF domain J4N44_22935 PF03707 Bacterial signalling protein N terminal repeat J4N44_22940 PF03880 DbpA RNA binding domain J4N44_22940 PF00270 DEAD/DEAH box helicase J4N44_22940 PF00271 Helicase conserved C-terminal domain J4N44_22945 PF00575 S1 RNA binding domain J4N44_22945 PF08206 Ribonuclease B OB domain J4N44_22945 PF00773 RNB domain J4N44_22950 PF12833 Helix-turn-helix domain J4N44_22960 PF12849 PBP superfamily domain J4N44_22965 PF01575 MaoC like domain J4N44_22975 PF16527 Two-component sensor protein CpxA, periplasmic domain J4N44_22975 PF00672 HAMP domain J4N44_22975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_22975 PF00512 His Kinase A (phospho-acceptor) domain J4N44_22980 PF00072 Response regulator receiver domain J4N44_22980 PF00486 Transcriptional regulatory protein, C terminal J4N44_22985 PF08534 Redoxin J4N44_22990 PF08534 Redoxin J4N44_22995 PF00892 EamA-like transporter family J4N44_23000 PF00005 ABC transporter J4N44_23005 PF00563 EAL domain J4N44_23005 PF12792 CSS motif domain associated with EAL J4N44_23025 PF00271 Helicase conserved C-terminal domain J4N44_23025 PF00270 DEAD/DEAH box helicase J4N44_23030 PF05231 MASE1 J4N44_23030 PF00990 Diguanylate cyclase, GGDEF domain J4N44_23030 PF08447 PAS fold J4N44_23030 PF08448 PAS fold J4N44_23030 PF00563 EAL domain J4N44_23030 PF13426 PAS domain J4N44_23035 PF07683 Cobalamin synthesis protein cobW C-terminal domain J4N44_23035 PF02492 CobW/HypB/UreG, nucleotide-binding domain J4N44_23045 PF01470 Pyroglutamyl peptidase J4N44_23060 PF07715 TonB-dependent Receptor Plug Domain J4N44_23060 PF00593 TonB dependent receptor J4N44_23070 PF13411 MerR HTH family regulatory protein J4N44_23075 PF00005 ABC transporter J4N44_23080 PF01032 FecCD transport family J4N44_23085 PF01032 FecCD transport family J4N44_23090 PF01497 Periplasmic binding protein J4N44_23105 PF01048 Phosphorylase superfamily J4N44_23110 PF04973 Nicotinamide mononucleotide transporter J4N44_23120 PF00356 Bacterial regulatory proteins, lacI family J4N44_23125 PF00294 pfkB family carbohydrate kinase J4N44_23130 PF13407 Periplasmic binding protein domain J4N44_23135 PF02653 Branched-chain amino acid transport system / permease component J4N44_23140 PF00005 ABC transporter J4N44_23145 PF05025 RbsD / FucU transport protein family J4N44_23150 PF00990 Diguanylate cyclase, GGDEF domain J4N44_23150 PF00563 EAL domain J4N44_23155 PF01048 Phosphorylase superfamily J4N44_23165 PF01177 Asp/Glu/Hydantoin racemase J4N44_23215 PF04116 Fatty acid hydroxylase superfamily J4N44_23230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_23230 PF09308 LuxQ, periplasmic J4N44_23230 PF00072 Response regulator receiver domain J4N44_23230 PF00512 His Kinase A (phospho-acceptor) domain J4N44_23235 PF00034 Cytochrome c J4N44_23235 PF03150 Di-haem cytochrome c peroxidase J4N44_23240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_23240 PF00512 His Kinase A (phospho-acceptor) domain J4N44_23240 PF09308 LuxQ, periplasmic J4N44_23240 PF00072 Response regulator receiver domain J4N44_23245 PF00990 Diguanylate cyclase, GGDEF domain J4N44_23245 PF00563 EAL domain J4N44_23245 PF03707 Bacterial signalling protein N terminal repeat J4N44_23260 PF01145 SPFH domain / Band 7 family J4N44_23260 PF16200 C-terminal region of band_7 J4N44_23270 PF00881 Nitroreductase family J4N44_23280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_23280 PF03466 LysR substrate binding domain J4N44_23295 PF08543 Phosphomethylpyrimidine kinase J4N44_23300 PF00155 Aminotransferase class I and II J4N44_23305 PF02080 TrkA-C domain J4N44_23305 PF06826 Predicted Permease Membrane Region J4N44_23315 PF13533 Biotin-lipoyl like J4N44_23330 PF00135 Carboxylesterase family J4N44_23335 PF13091 PLD-like domain J4N44_23340 PF17243 POTRA domain TamA domain 1 J4N44_23340 PF01103 Surface antigen J4N44_23350 PF01544 CorA-like Mg2+ transporter protein J4N44_23355 PF00005 ABC transporter J4N44_23355 PF00571 CBS domain J4N44_23360 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_23365 PF04069 Substrate binding domain of ABC-type glycine betaine transport system J4N44_23370 PF00732 GMC oxidoreductase J4N44_23370 PF05199 GMC oxidoreductase J4N44_23375 PF00171 Aldehyde dehydrogenase family J4N44_23380 PF13977 BetI-type transcriptional repressor, C-terminal J4N44_23380 PF00440 Bacterial regulatory proteins, tetR family J4N44_23385 PF00171 Aldehyde dehydrogenase family J4N44_23390 PF12833 Helix-turn-helix domain J4N44_23390 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term J4N44_23395 PF07694 5TMR of 5TMR-LYT J4N44_23395 PF00990 Diguanylate cyclase, GGDEF domain J4N44_23410 PF01979 Amidohydrolase family J4N44_23420 PF01553 Acyltransferase J4N44_23450 PF13488 Glycine zipper J4N44_23450 PF00691 OmpA family J4N44_23485 PF00437 Type II/IV secretion system protein J4N44_23490 PF10609 NUBPL iron-transfer P-loop NTPase J4N44_23500 PF13629 Pilus formation protein N terminal region J4N44_23500 PF00263 Bacterial type II and III secretion system protein J4N44_23500 PF04972 BON domain J4N44_23520 PF03466 LysR substrate binding domain J4N44_23520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_23525 PF12146 Serine aminopeptidase, S33 J4N44_23535 PF05762 VWA domain containing CoxE-like protein J4N44_23540 PF07728 AAA domain (dynein-related subfamily) J4N44_23540 PF17868 AAA lid domain J4N44_23540 PF12592 Protein of unknown function (DUF3763) J4N44_23545 PF00478 IMP dehydrogenase / GMP reductase domain J4N44_23550 PF01256 Carbohydrate kinase J4N44_23550 PF03853 YjeF-related protein N-terminus J4N44_23560 PF00072 Response regulator receiver domain J4N44_23565 PF00248 Aldo/keto reductase family J4N44_23580 PF00654 Voltage gated chloride channel J4N44_23590 PF01566 Natural resistance-associated macrophage protein J4N44_23595 PF01227 GTP cyclohydrolase I J4N44_23600 PF03453 MoeA N-terminal region (domain I and II) J4N44_23600 PF03454 MoeA C-terminal region (domain IV) J4N44_23600 PF00994 Probable molybdopterin binding domain J4N44_23605 PF00899 ThiF family J4N44_23620 PF00581 Rhodanese-like domain J4N44_23625 PF00990 Diguanylate cyclase, GGDEF domain J4N44_23625 PF03707 Bacterial signalling protein N terminal repeat J4N44_23625 PF00563 EAL domain J4N44_23630 PF08329 Chitinase A, N-terminal domain J4N44_23630 PF00704 Glycosyl hydrolases family 18 J4N44_23640 PF00923 Transaldolase/Fructose-6-phosphate aldolase J4N44_23645 PF02779 Transketolase, pyrimidine binding domain J4N44_23645 PF02780 Transketolase, C-terminal domain J4N44_23645 PF00456 Transketolase, thiamine diphosphate binding domain J4N44_23650 PF08447 PAS fold J4N44_23650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N44_23655 PF07690 Major Facilitator Superfamily J4N44_23660 PF00793 DAHP synthetase I family J4N44_23665 PF01389 OmpA-like transmembrane domain J4N44_23665 PF00691 OmpA family J4N44_23670 PF01040 UbiA prenyltransferase family J4N44_23675 PF02628 Cytochrome oxidase assembly protein J4N44_23695 PF00510 Cytochrome c oxidase subunit III J4N44_23700 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 J4N44_23705 PF00115 Cytochrome C and Quinol oxidase polypeptide I J4N44_23710 PF02790 Cytochrome C oxidase subunit II, transmembrane domain J4N44_23710 PF00116 Cytochrome C oxidase subunit II, periplasmic domain J4N44_23715 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J4N44_23715 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J4N44_23715 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J4N44_23715 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J4N44_23725 PF01810 LysE type translocator J4N44_23745 PF01557 Fumarylacetoacetate (FAA) hydrolase family J4N44_23760 PF00892 EamA-like transporter family J4N44_23765 PF00462 Glutaredoxin J4N44_23775 PF07690 Major Facilitator Superfamily J4N44_23780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_23780 PF03466 LysR substrate binding domain J4N44_23785 PF00990 Diguanylate cyclase, GGDEF domain J4N44_23785 PF08447 PAS fold J4N44_23785 PF00563 EAL domain J4N44_23785 PF08448 PAS fold J4N44_23790 PF01476 LysM domain J4N44_23790 PF08525 Opacity-associated protein A N-terminal motif J4N44_23790 PF01551 Peptidase family M23 J4N44_23810 PF07670 Nucleoside recognition J4N44_23815 PF02743 Cache domain J4N44_23815 PF00672 HAMP domain J4N44_23815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N44_23825 PF03222 Tryptophan/tyrosine permease family J4N44_23860 PF08240 Alcohol dehydrogenase GroES-like domain J4N44_23860 PF00107 Zinc-binding dehydrogenase J4N44_23865 PF02378 Phosphotransferase system, EIIC J4N44_23865 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N44_23870 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N44_23875 PF07702 UTRA domain J4N44_23875 PF00392 Bacterial regulatory proteins, gntR family J4N44_23880 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N44_23880 PF02378 Phosphotransferase system, EIIC J4N44_23880 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J4N44_23885 PF09261 Alpha mannosidase middle domain J4N44_23885 PF07748 Glycosyl hydrolases family 38 C-terminal domain J4N44_23885 PF01074 Glycosyl hydrolases family 38 N-terminal domain J4N44_23890 PF01238 Phosphomannose isomerase type I J4N44_23895 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J4N44_23910 PF01638 HxlR-like helix-turn-helix J4N44_23925 PF01758 Sodium Bile acid symporter family J4N44_23940 PF01161 Phosphatidylethanolamine-binding protein J4N44_23945 PF02567 Phenazine biosynthesis-like protein J4N44_23950 PF02525 Flavodoxin-like fold J4N44_23955 PF02254 TrkA-N domain J4N44_23955 PF00999 Sodium/hydrogen exchanger family J4N44_23965 PF03466 LysR substrate binding domain J4N44_23965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_23995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_23995 PF03466 LysR substrate binding domain J4N44_24015 PF00107 Zinc-binding dehydrogenase J4N44_24015 PF14765 Polyketide synthase dehydratase J4N44_24015 PF00550 Phosphopantetheine attachment site J4N44_24015 PF08240 Alcohol dehydrogenase GroES-like domain J4N44_24015 PF02801 Beta-ketoacyl synthase, C-terminal domain J4N44_24015 PF16197 Ketoacyl-synthetase C-terminal extension J4N44_24015 PF00698 Acyl transferase domain J4N44_24015 PF08659 KR domain J4N44_24015 PF00109 Beta-ketoacyl synthase, N-terminal domain J4N44_24020 PF00128 Alpha amylase, catalytic domain J4N44_24030 PF01653 NAD-dependent DNA ligase adenylation domain J4N44_24030 PF03120 NAD-dependent DNA ligase OB-fold domain J4N44_24030 PF03119 NAD-dependent DNA ligase C4 zinc finger domain J4N44_24030 PF12826 Helix-hairpin-helix motif J4N44_24030 PF00533 BRCA1 C Terminus (BRCT) domain J4N44_24040 PF00072 Response regulator receiver domain J4N44_24040 PF01584 CheW-like domain J4N44_24050 PF01243 Pyridoxamine 5'-phosphate oxidase J4N44_24055 PF06228 Haem utilisation ChuX/HutX J4N44_24060 PF04055 Radical SAM superfamily J4N44_24065 PF03544 Gram-negative bacterial TonB protein C-terminal J4N44_24070 PF01618 MotA/TolQ/ExbB proton channel family J4N44_24075 PF02472 Biopolymer transport protein ExbD/TolR J4N44_24085 PF01032 FecCD transport family J4N44_24090 PF00005 ABC transporter J4N44_24095 PF00672 HAMP domain J4N44_24095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N44_24095 PF17200 Single Cache domain 2 J4N44_24105 PF00005 ABC transporter J4N44_24115 PF01042 Endoribonuclease L-PSP J4N44_24125 PF02838 Glycosyl hydrolase family 20, domain 2 J4N44_24125 PF00728 Glycosyl hydrolase family 20, catalytic domain J4N44_24130 PF01081 KDPG and KHG aldolase J4N44_24135 PF00294 pfkB family carbohydrate kinase J4N44_24140 PF00474 Sodium:solute symporter family J4N44_24150 PF07969 Amidohydrolase family J4N44_24160 PF01380 SIS domain J4N44_24160 PF02685 Glucokinase J4N44_24160 PF01418 Helix-turn-helix domain, rpiR family J4N44_24175 PF12838 4Fe-4S dicluster domain J4N44_24175 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J4N44_24175 PF00384 Molybdopterin oxidoreductase J4N44_24175 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region J4N44_24175 PF01568 Molydopterin dinucleotide binding domain J4N44_24190 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N44_24195 PF00873 AcrB/AcrD/AcrF family J4N44_24220 PF08659 KR domain J4N44_24220 PF02801 Beta-ketoacyl synthase, C-terminal domain J4N44_24220 PF00109 Beta-ketoacyl synthase, N-terminal domain J4N44_24220 PF16197 Ketoacyl-synthetase C-terminal extension J4N44_24220 PF08240 Alcohol dehydrogenase GroES-like domain J4N44_24220 PF00698 Acyl transferase domain J4N44_24220 PF00550 Phosphopantetheine attachment site J4N44_24220 PF14765 Polyketide synthase dehydratase J4N44_24225 PF03543 Yersinia/Haemophilus virulence surface antigen J4N44_24235 PF00583 Acetyltransferase (GNAT) family J4N44_24235 PF13673 Acetyltransferase (GNAT) domain J4N44_24255 PF05193 Peptidase M16 inactive domain J4N44_24255 PF00675 Insulinase (Peptidase family M16) J4N44_24260 PF00005 ABC transporter J4N44_24260 PF06472 ABC transporter transmembrane region 2 J4N44_24265 PF07715 TonB-dependent Receptor Plug Domain J4N44_24275 PF01618 MotA/TolQ/ExbB proton channel family J4N44_24280 PF01618 MotA/TolQ/ExbB proton channel family J4N44_24285 PF02472 Biopolymer transport protein ExbD/TolR J4N44_24300 PF00293 NUDIX domain J4N44_24310 PF00034 Cytochrome c J4N44_24310 PF14376 Haem-binding domain J4N44_24310 PF03150 Di-haem cytochrome c peroxidase J4N44_24320 PF13302 Acetyltransferase (GNAT) domain J4N44_24330 PF00326 Prolyl oligopeptidase family J4N44_24330 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain J4N44_24335 PF00005 ABC transporter J4N44_24335 PF16326 ABC transporter C-terminal domain J4N44_24335 PF12848 ABC transporter J4N44_24340 PF01980 tRNA-methyltransferase O J4N44_24360 PF00582 Universal stress protein family J4N44_24370 PF00455 DeoR C terminal sensor domain J4N44_24370 PF08220 DeoR-like helix-turn-helix domain J4N44_24375 PF03009 Glycerophosphoryl diester phosphodiesterase family J4N44_24380 PF13416 Bacterial extracellular solute-binding protein J4N44_24385 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_24390 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_24395 PF00005 ABC transporter J4N44_24395 PF17912 MalK OB fold domain J4N44_24410 PF01047 MarR family J4N44_24425 PF07683 Cobalamin synthesis protein cobW C-terminal domain J4N44_24425 PF02492 CobW/HypB/UreG, nucleotide-binding domain J4N44_24430 PF00132 Bacterial transferase hexapeptide (six repeats) J4N44_24435 PF01979 Amidohydrolase family J4N44_24445 PF01734 Patatin-like phospholipase J4N44_24450 PF05726 Pirin C-terminal cupin domain J4N44_24450 PF02678 Pirin J4N44_24455 PF00313 'Cold-shock' DNA-binding domain J4N44_24465 PF00962 Adenosine/AMP deaminase J4N44_24470 PF00990 Diguanylate cyclase, GGDEF domain J4N44_24470 PF17151 Periplasmic sensor domain J4N44_24475 PF03466 LysR substrate binding domain J4N44_24475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_24490 PF00462 Glutaredoxin J4N44_24490 PF08534 Redoxin J4N44_24495 PF08241 Methyltransferase domain J4N44_24505 PF00990 Diguanylate cyclase, GGDEF domain J4N44_24505 PF08448 PAS fold J4N44_24510 PF00768 D-alanyl-D-alanine carboxypeptidase J4N44_24510 PF07943 Penicillin-binding protein 5, C-terminal domain J4N44_24515 PF02028 BCCT, betaine/carnitine/choline family transporter J4N44_24520 PF02525 Flavodoxin-like fold J4N44_24525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_24525 PF03466 LysR substrate binding domain J4N44_24530 PF02798 Glutathione S-transferase, N-terminal domain J4N44_24535 PF02909 Tetracyclin repressor-like, C-terminal domain J4N44_24535 PF00440 Bacterial regulatory proteins, tetR family J4N44_24540 PF01872 RibD C-terminal domain J4N44_24555 PF00005 ABC transporter J4N44_24555 PF03412 Peptidase C39 family J4N44_24555 PF00664 ABC transporter transmembrane region J4N44_24560 PF00529 HlyD membrane-fusion protein of T1SS J4N44_24560 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N44_24565 PF10502 Signal peptidase, peptidase S26 J4N44_24625 PF00106 short chain dehydrogenase J4N44_24635 PF00375 Sodium:dicarboxylate symporter family J4N44_24640 PF07992 Pyridine nucleotide-disulphide oxidoreductase J4N44_24650 PF00127 Copper binding proteins, plastocyanin/azurin family J4N44_24655 PF02378 Phosphotransferase system, EIIC J4N44_24660 PF03707 Bacterial signalling protein N terminal repeat J4N44_24660 PF00563 EAL domain J4N44_24660 PF00990 Diguanylate cyclase, GGDEF domain J4N44_24685 PF00005 ABC transporter J4N44_24690 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_24695 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_24700 PF12849 PBP superfamily domain J4N44_24705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_24705 PF00512 His Kinase A (phospho-acceptor) domain J4N44_24705 PF02743 Cache domain J4N44_24710 PF01966 HD domain J4N44_24710 PF00072 Response regulator receiver domain J4N44_24715 PF12464 Maltose acetyltransferase J4N44_24715 PF14602 Hexapeptide repeat of succinyl-transferase J4N44_24720 PF00529 HlyD membrane-fusion protein of T1SS J4N44_24725 PF00664 ABC transporter transmembrane region J4N44_24725 PF00005 ABC transporter J4N44_24735 PF00196 Bacterial regulatory proteins, luxR family J4N44_24740 PF00196 Bacterial regulatory proteins, luxR family J4N44_24750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N44_24750 PF00672 HAMP domain J4N44_24750 PF02743 Cache domain J4N44_24755 PF07726 ATPase family associated with various cellular activities (AAA) J4N44_24755 PF17863 AAA lid domain J4N44_24760 PF01882 Protein of unknown function DUF58 J4N44_24770 PF13519 von Willebrand factor type A domain J4N44_24775 PF13519 von Willebrand factor type A domain J4N44_24790 PF00005 ABC transporter J4N44_24795 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_24800 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_24805 PF12849 PBP superfamily domain J4N44_24810 PF02743 Cache domain J4N44_24810 PF00672 HAMP domain J4N44_24810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N44_24820 PF00270 DEAD/DEAH box helicase J4N44_24820 PF00271 Helicase conserved C-terminal domain J4N44_24830 PF17969 L,D-transpeptidase C-terminal domain J4N44_24830 PF03734 L,D-transpeptidase catalytic domain J4N44_24830 PF01476 LysM domain J4N44_24835 PF03441 FAD binding domain of DNA photolyase J4N44_24835 PF00875 DNA photolyase J4N44_24840 PF13411 MerR HTH family regulatory protein J4N44_24845 PF08349 Protein of unknown function (DUF1722) J4N44_24850 PF01048 Phosphorylase superfamily J4N44_24865 PF00990 Diguanylate cyclase, GGDEF domain J4N44_24875 PF11742 Protein of unknown function (DUF3302) J4N44_24880 PF00529 HlyD membrane-fusion protein of T1SS J4N44_24880 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N44_24885 PF07155 ECF-type riboflavin transporter, S component J4N44_24890 PF00005 ABC transporter J4N44_24890 PF12558 ATP-binding cassette cobalt transporter J4N44_24905 PF01022 Bacterial regulatory protein, arsR family J4N44_24910 PF12837 4Fe-4S binding domain J4N44_24910 PF12801 4Fe-4S binding domain J4N44_24915 PF12800 4Fe-4S binding domain J4N44_24915 PF12838 4Fe-4S dicluster domain J4N44_24920 PF13302 Acetyltransferase (GNAT) domain J4N44_24935 PF07238 PilZ domain J4N44_24935 PF12945 Flagellar protein YcgR J4N44_24940 PF12729 Four helix bundle sensory module for signal transduction J4N44_24940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N44_24940 PF00672 HAMP domain J4N44_24945 PF12729 Four helix bundle sensory module for signal transduction J4N44_24945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N44_24945 PF00672 HAMP domain J4N44_24950 PF05362 Lon protease (S16) C-terminal proteolytic domain J4N44_24950 PF13654 AAA domain J4N44_24960 PF00005 ABC transporter J4N44_24960 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N44_24965 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain J4N44_24965 PF00326 Prolyl oligopeptidase family J4N44_24970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_24970 PF03466 LysR substrate binding domain J4N44_24975 PF02652 L-lactate permease J4N44_24980 PF01070 FMN-dependent dehydrogenase J4N44_24990 PF00924 Mechanosensitive ion channel J4N44_24995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_24995 PF03466 LysR substrate binding domain J4N44_25005 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J4N44_25005 PF13378 Enolase C-terminal domain-like J4N44_25010 PF03764 Elongation factor G, domain IV J4N44_25010 PF00009 Elongation factor Tu GTP binding domain J4N44_25010 PF03144 Elongation factor Tu domain 2 J4N44_25010 PF14492 Elongation Factor G, domain II J4N44_25010 PF00679 Elongation factor G C-terminus J4N44_25030 PF02001 Protein of unknown function DUF134 J4N44_25040 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_25045 PF00005 ABC transporter J4N44_25045 PF00571 CBS domain J4N44_25070 PF03466 LysR substrate binding domain J4N44_25070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_25095 PF06942 GlpM protein J4N44_25105 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family J4N44_25105 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain J4N44_25115 PF00857 Isochorismatase family J4N44_25120 PF00080 Copper/zinc superoxide dismutase (SODC) J4N44_25130 PF06628 Catalase-related immune-responsive J4N44_25130 PF00199 Catalase J4N44_25150 PF01238 Phosphomannose isomerase type I J4N44_25155 PF00155 Aminotransferase class I and II J4N44_25160 PF02378 Phosphotransferase system, EIIC J4N44_25160 PF00367 phosphotransferase system, EIIB J4N44_25165 PF00356 Bacterial regulatory proteins, lacI family J4N44_25165 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family J4N44_25170 PF08220 DeoR-like helix-turn-helix domain J4N44_25170 PF00455 DeoR C terminal sensor domain J4N44_25175 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N44_25180 PF01641 SelR domain J4N44_25180 PF01625 Peptide methionine sulfoxide reductase J4N44_25190 PF02378 Phosphotransferase system, EIIC J4N44_25190 PF00367 phosphotransferase system, EIIB J4N44_25195 PF01546 Peptidase family M20/M25/M40 J4N44_25200 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) J4N44_25205 PF02779 Transketolase, pyrimidine binding domain J4N44_25205 PF02780 Transketolase, C-terminal domain J4N44_25205 PF00456 Transketolase, thiamine diphosphate binding domain J4N44_25210 PF00923 Transaldolase/Fructose-6-phosphate aldolase J4N44_25215 PF13419 Haloacid dehalogenase-like hydrolase J4N44_25220 PF00465 Iron-containing alcohol dehydrogenase J4N44_25235 PF08220 DeoR-like helix-turn-helix domain J4N44_25235 PF00455 DeoR C terminal sensor domain J4N44_25250 PF07971 Glycosyl hydrolase family 92 J4N44_25250 PF17678 Glycosyl hydrolase family 92 N-terminal domain J4N44_25255 PF17678 Glycosyl hydrolase family 92 N-terminal domain J4N44_25255 PF07971 Glycosyl hydrolase family 92 J4N44_25265 PF07971 Glycosyl hydrolase family 92 J4N44_25265 PF17678 Glycosyl hydrolase family 92 N-terminal domain J4N44_25270 PF07971 Glycosyl hydrolase family 92 J4N44_25270 PF17678 Glycosyl hydrolase family 92 N-terminal domain J4N44_25280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_25280 PF03466 LysR substrate binding domain J4N44_25285 PF01810 LysE type translocator J4N44_25290 PF00581 Rhodanese-like domain J4N44_25305 PF00440 Bacterial regulatory proteins, tetR family J4N44_25305 PF13977 BetI-type transcriptional repressor, C-terminal J4N44_25310 PF03466 LysR substrate binding domain J4N44_25310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_25325 PF00005 ABC transporter J4N44_25325 PF12848 ABC transporter J4N44_25330 PF13409 Glutathione S-transferase, N-terminal domain J4N44_25335 PF03358 NADPH-dependent FMN reductase J4N44_25340 PF03466 LysR substrate binding domain J4N44_25340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_25345 PF09905 DNA-binding protein VF530 J4N44_25350 PF12848 ABC transporter J4N44_25350 PF00005 ABC transporter J4N44_25365 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N44_25370 PF02567 Phenazine biosynthesis-like protein J4N44_25385 PF05114 Protein of unknown function (DUF692) J4N44_25400 PF01654 Cytochrome bd terminal oxidase subunit I J4N44_25405 PF02322 Cytochrome bd terminal oxidase subunit II J4N44_25425 PF13344 Haloacid dehalogenase-like hydrolase J4N44_25425 PF00293 NUDIX domain J4N44_25440 PF00561 alpha/beta hydrolase fold J4N44_25445 PF12833 Helix-turn-helix domain J4N44_25445 PF02311 AraC-like ligand binding domain J4N44_25450 PF12833 Helix-turn-helix domain J4N44_25450 PF17853 GGDEF-like domain J4N44_25460 PF02901 Pyruvate formate lyase-like J4N44_25460 PF01228 Glycine radical J4N44_25465 PF04055 Radical SAM superfamily J4N44_25470 PF00923 Transaldolase/Fructose-6-phosphate aldolase J4N44_25485 PF00672 HAMP domain J4N44_25485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_25485 PF00512 His Kinase A (phospho-acceptor) domain J4N44_25490 PF00486 Transcriptional regulatory protein, C terminal J4N44_25490 PF00072 Response regulator receiver domain J4N44_25500 PF00583 Acetyltransferase (GNAT) family J4N44_25510 PF07690 Major Facilitator Superfamily J4N44_25515 PF03466 LysR substrate binding domain J4N44_25515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_25525 PF03466 LysR substrate binding domain J4N44_25525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_25530 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family J4N44_25540 PF00892 EamA-like transporter family J4N44_25560 PF13533 Biotin-lipoyl like J4N44_25570 PF01594 AI-2E family transporter J4N44_25575 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) J4N44_25590 PF00970 Oxidoreductase FAD-binding domain J4N44_25590 PF00175 Oxidoreductase NAD-binding domain J4N44_25600 PF09905 DNA-binding protein VF530 J4N44_25605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_25605 PF03466 LysR substrate binding domain J4N44_25615 PF00881 Nitroreductase family J4N44_25625 PF00686 Starch binding domain J4N44_25625 PF00128 Alpha amylase, catalytic domain J4N44_25630 PF07943 Penicillin-binding protein 5, C-terminal domain J4N44_25630 PF00768 D-alanyl-D-alanine carboxypeptidase J4N44_25635 PF00561 alpha/beta hydrolase fold J4N44_25645 PF01809 Putative membrane protein insertion efficiency factor J4N44_25665 PF00268 Ribonucleotide reductase, small chain J4N44_25670 PF02867 Ribonucleotide reductase, barrel domain J4N44_25670 PF03477 ATP cone domain J4N44_25670 PF00317 Ribonucleotide reductase, all-alpha domain J4N44_25675 PF00581 Rhodanese-like domain J4N44_25675 PF17773 UPF0176 acylphosphatase like domain J4N44_25685 PF00875 DNA photolyase J4N44_25685 PF03441 FAD binding domain of DNA photolyase J4N44_25690 PF02469 Fasciclin domain J4N44_25700 PF01734 Patatin-like phospholipase J4N44_25705 PF01914 MarC family integral membrane protein J4N44_25710 PF00881 Nitroreductase family J4N44_25715 PF02563 Polysaccharide biosynthesis/export protein J4N44_25715 PF10531 SLBB domain J4N44_25715 PF18412 Outer-membrane lipoprotein Wza C-terminal domain J4N44_25720 PF01451 Low molecular weight phosphotyrosine protein phosphatase J4N44_25725 PF13807 G-rich domain on putative tyrosine kinase J4N44_25725 PF13614 AAA domain J4N44_25725 PF02706 Chain length determinant protein J4N44_25735 PF08803 Putative mono-oxygenase ydhR J4N44_25740 PF03466 LysR substrate binding domain J4N44_25740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_25770 PF00375 Sodium:dicarboxylate symporter family J4N44_25785 PF06803 Protein of unknown function (DUF1232) J4N44_25790 PF07687 Peptidase dimerisation domain J4N44_25790 PF01546 Peptidase family M20/M25/M40 J4N44_25795 PF07670 Nucleoside recognition J4N44_25800 PF07670 Nucleoside recognition J4N44_25815 PF00128 Alpha amylase, catalytic domain J4N44_25820 PF00912 Transglycosylase J4N44_25825 PF00128 Alpha amylase, catalytic domain J4N44_25825 PF02806 Alpha amylase, C-terminal all-beta domain J4N44_25825 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J4N44_25830 PF02446 4-alpha-glucanotransferase J4N44_25835 PF00343 Carbohydrate phosphorylase J4N44_25840 PF00196 Bacterial regulatory proteins, luxR family J4N44_25840 PF17874 MalT-like TPR region J4N44_25855 PF02630 SCO1/SenC J4N44_25865 PF02378 Phosphotransferase system, EIIC J4N44_25865 PF00367 phosphotransferase system, EIIB J4N44_25870 PF03193 RsgA GTPase J4N44_25875 PF00375 Sodium:dicarboxylate symporter family J4N44_25880 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J4N44_25880 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J4N44_25895 PF01116 Fructose-bisphosphate aldolase class-II J4N44_25905 PF00294 pfkB family carbohydrate kinase J4N44_25910 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J4N44_25910 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J4N44_25915 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J4N44_25915 PF00205 Thiamine pyrophosphate enzyme, central domain J4N44_25915 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J4N44_25920 PF01261 Xylose isomerase-like TIM barrel J4N44_25925 PF00083 Sugar (and other) transporter J4N44_25930 PF03466 LysR substrate binding domain J4N44_25930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_25940 PF01261 Xylose isomerase-like TIM barrel J4N44_25945 PF00108 Thiolase, N-terminal domain J4N44_25945 PF02803 Thiolase, C-terminal domain J4N44_25950 PF01144 Coenzyme A transferase J4N44_25955 PF01144 Coenzyme A transferase J4N44_25965 PF08543 Phosphomethylpyrimidine kinase J4N44_25975 PF13520 Amino acid permease J4N44_25980 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain J4N44_25980 PF01276 Orn/Lys/Arg decarboxylase, major domain J4N44_25980 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain J4N44_25995 PF03714 Bacterial pullanase-associated domain J4N44_25995 PF11852 Domain of unknown function (DUF3372) J4N44_25995 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J4N44_25995 PF18494 Pullulanase Ins domain J4N44_25995 PF17967 Pullulanase N2 domain J4N44_26000 PF02595 Glycerate kinase family J4N44_26005 PF05651 Putative sugar diacid recognition J4N44_26005 PF17853 GGDEF-like domain J4N44_26005 PF13556 PucR C-terminal helix-turn-helix domain J4N44_26015 PF01979 Amidohydrolase family J4N44_26040 PF13419 Haloacid dehalogenase-like hydrolase J4N44_26060 PF03466 LysR substrate binding domain J4N44_26060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_26075 PF00664 ABC transporter transmembrane region J4N44_26075 PF00005 ABC transporter J4N44_26080 PF00664 ABC transporter transmembrane region J4N44_26080 PF00005 ABC transporter J4N44_26085 PF07715 TonB-dependent Receptor Plug Domain J4N44_26085 PF00593 TonB dependent receptor J4N44_26095 PF12833 Helix-turn-helix domain J4N44_26100 PF03974 Ecotin J4N44_26105 PF01810 LysE type translocator J4N44_26110 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J4N44_26125 PF01204 Trehalase J4N44_26135 PF12706 Beta-lactamase superfamily domain J4N44_26145 PF07690 Major Facilitator Superfamily J4N44_26150 PF13533 Biotin-lipoyl like J4N44_26160 PF16868 NMT1-like family J4N44_26165 PF03922 OmpW family J4N44_26170 PF13599 Pentapeptide repeats (9 copies) J4N44_26195 PF00893 Small Multidrug Resistance protein J4N44_26205 PF18416 N-acetylglucosamine binding protein domain 2 J4N44_26205 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading J4N44_26210 PF01037 Lrp/AsnC ligand binding domain J4N44_26215 PF01810 LysE type translocator J4N44_26220 PF00326 Prolyl oligopeptidase family J4N44_26225 PF04954 Siderophore-interacting protein J4N44_26225 PF08021 Siderophore-interacting FAD-binding domain J4N44_26230 PF03466 LysR substrate binding domain J4N44_26230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_26240 PF00797 N-acetyltransferase J4N44_26245 PF00107 Zinc-binding dehydrogenase J4N44_26245 PF08240 Alcohol dehydrogenase GroES-like domain J4N44_26250 PF00756 Putative esterase J4N44_26260 PF05656 Protein of unknown function (DUF805) J4N44_26270 PF00990 Diguanylate cyclase, GGDEF domain J4N44_26270 PF17152 Periplasmic sensor domain J4N44_26290 PF01809 Putative membrane protein insertion efficiency factor J4N44_26295 PF00849 RNA pseudouridylate synthase J4N44_26300 PF01554 MatE J4N44_26305 PF00356 Bacterial regulatory proteins, lacI family J4N44_26310 PF00005 ABC transporter J4N44_26310 PF17912 MalK OB fold domain J4N44_26315 PF00232 Glycosyl hydrolase family 1 J4N44_26320 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_26325 PF00528 Binding-protein-dependent transport system inner membrane component J4N44_26335 PF00356 Bacterial regulatory proteins, lacI family J4N44_26340 PF02264 LamB porin J4N44_26345 PF00563 EAL domain J4N44_26345 PF00990 Diguanylate cyclase, GGDEF domain J4N44_26345 PF03707 Bacterial signalling protein N terminal repeat J4N44_26355 PF06865 Pyrimidine/purine nucleoside phosphorylase J4N44_26365 PF00704 Glycosyl hydrolases family 18 J4N44_26365 PF08329 Chitinase A, N-terminal domain J4N44_26385 PF03600 Citrate transporter J4N44_26405 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 J4N44_26415 PF16325 Peptidase family U32 C-terminal domain J4N44_26415 PF01136 Peptidase family U32 J4N44_26425 PF01116 Fructose-bisphosphate aldolase class-II J4N44_26430 PF01979 Amidohydrolase family J4N44_26435 PF03610 PTS system fructose IIA component J4N44_26440 PF03613 PTS system mannose/fructose/sorbose family IID component J4N44_26445 PF03609 PTS system sorbose-specific iic component J4N44_26450 PF03830 PTS system sorbose subfamily IIB component J4N44_26455 PF01380 SIS domain J4N44_26460 PF08013 Tagatose 6 phosphate kinase J4N44_26465 PF00455 DeoR C terminal sensor domain J4N44_26465 PF08220 DeoR-like helix-turn-helix domain J4N44_26470 PF00455 DeoR C terminal sensor domain J4N44_26470 PF08220 DeoR-like helix-turn-helix domain J4N44_26480 PF00005 ABC transporter J4N44_26485 PF02687 FtsX-like permease family J4N44_26485 PF12704 MacB-like periplasmic core domain J4N44_26515 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J4N44_26515 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain J4N44_26520 PF06029 AlkA N-terminal domain J4N44_26520 PF00730 HhH-GPD superfamily base excision DNA repair protein J4N44_26530 PF07681 DoxX J4N44_26535 PF03466 LysR substrate binding domain J4N44_26535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_26550 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase J4N44_26565 PF01261 Xylose isomerase-like TIM barrel J4N44_26570 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family J4N44_26580 PF00596 Class II Aldolase and Adducin N-terminal domain J4N44_26585 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J4N44_26590 PF03611 PTS system sugar-specific permease component J4N44_26595 PF00455 DeoR C terminal sensor domain J4N44_26595 PF08220 DeoR-like helix-turn-helix domain J4N44_26605 PF03616 Sodium/glutamate symporter J4N44_26610 PF00392 Bacterial regulatory proteins, gntR family J4N44_26610 PF00155 Aminotransferase class I and II J4N44_26615 PF00005 ABC transporter J4N44_26630 PF03616 Sodium/glutamate symporter J4N44_26635 PF00132 Bacterial transferase hexapeptide (six repeats) J4N44_26650 PF00672 HAMP domain J4N44_26650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J4N44_26650 PF17200 Single Cache domain 2 J4N44_26655 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J4N44_26660 PF00072 Response regulator receiver domain J4N44_26660 PF04397 LytTr DNA-binding domain J4N44_26665 PF07694 5TMR of 5TMR-LYT J4N44_26665 PF06580 Histidine kinase J4N44_26665 PF13492 GAF domain J4N44_26665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_26685 PF00005 ABC transporter J4N44_26695 PF03466 LysR substrate binding domain J4N44_26695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J4N44_26700 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J4N44_26710 PF01098 Cell cycle protein J4N44_26715 PF01709 Transcriptional regulator J4N44_26725 PF17149 Periplasmic sensor domain found in signal transduction proteins J4N44_26725 PF00672 HAMP domain J4N44_26725 PF00072 Response regulator receiver domain J4N44_26725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J4N44_26725 PF00512 His Kinase A (phospho-acceptor) domain J4N44_26725 PF01627 Hpt domain J4N44_26735 PF00925 GTP cyclohydrolase II J4N44_26735 PF08719 Domain of unknown function (DUF1768) J4N44_26745 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N44_26745 PF00005 ABC transporter J4N44_26750 PF00005 ABC transporter J4N44_26750 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J4N44_26765 PF18607 ParA helix turn helix domain J4N44_26765 PF13614 AAA domain J4N44_26805 PF13438 Domain of unknown function (DUF4113) J4N44_26805 PF00817 impB/mucB/samB family J4N44_26805 PF11799 impB/mucB/samB family C-terminal domain J4N44_26850 PF00816 H-NS histone family J4N44_27010 PF00765 Autoinducer synthase J4N44_27085 PF01555 DNA methylase J4N44_27120 PF08808 RES domain J4N44_27215 PF04245 37-kD nucleoid-associated bacterial protein J4N44_27270 PF04002 RadC-like JAB domain J4N44_27380 PF01206 Sulfurtransferase TusA J4N44_27435 PF00239 Resolvase, N terminal domain J4N44_27435 PF02796 Helix-turn-helix domain of resolvase J4N44_27535 PF08668 HDOD domain J4N44_27535 PF00563 EAL domain J4N44_27755 PF00482 Type II secretion system (T2SS), protein F J4N44_27760 PF00437 Type II/IV secretion system protein J4N44_27850 PF00990 Diguanylate cyclase, GGDEF domain J4N44_27850 PF00563 EAL domain J4N44_27850 PF13426 PAS domain J4N44_27930 PF01751 Toprim domain J4N44_27930 PF01131 DNA topoisomerase J4N44_27965 PF00271 Helicase conserved C-terminal domain J4N44_27965 PF04851 Type III restriction enzyme, res subunit J4N44_27995 PF00145 C-5 cytosine-specific DNA methylase J4N44_28040 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J4N44_28040 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase