locus-tag	class	description
J4N44_00010	COG0592	DNA-directed DNA polymerase activity
J4N44_00020	COG0187	DNA topoisomerase II activity
J4N44_00025	COG0071	Belongs to the small heat shock protein (HSP20) family
J4N44_00030	COG3977	Valine--pyruvate aminotransferase
J4N44_00035	COG0366	Alpha amylase catalytic
J4N44_00050	COG2119	membrane
J4N44_00060	COG0425	Belongs to the sulfur carrier protein TusA family
J4N44_00075	COG0604	alcohol dehydrogenase
J4N44_00080	COG0183	Belongs to the thiolase family
J4N44_00090	COG1739	Uncharacterized protein family UPF0029
J4N44_00095	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
J4N44_00145	COG0583	DNA-binding transcription factor activity
J4N44_00150	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
J4N44_00155	COG2960	long-chain fatty acid transporting porin activity
J4N44_00160	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
J4N44_00165	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J4N44_00170	COG1309	transcriptional regulator
J4N44_00210	COG0546	phosphoglycolate phosphatase activity
J4N44_00215	COG4172	Belongs to the ABC transporter superfamily
J4N44_00220	COG0747	negative chemotaxis
J4N44_00225	COG0601	transmembrane transport
J4N44_00230	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J4N44_00265	COG1609	Transcriptional regulator
J4N44_00270	COG0583	DNA-binding transcription factor activity
J4N44_00275	COG2076	Multidrug Resistance protein
J4N44_00285	COG0129	dihydroxy-acid dehydratase activity
J4N44_00290	COG3265	gluconokinase activity
J4N44_00295	COG2610	gluconate transmembrane transporter activity
J4N44_00300	COG0800	Aldolase
J4N44_00305	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
J4N44_00315	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
J4N44_00325	COG1522	sequence-specific DNA binding
J4N44_00330	COG5002	protein histidine kinase activity
J4N44_00330	COG5001	Diguanylate cyclase
J4N44_00350	COG0589	response to stress
J4N44_00355	COG1528	Iron-storage protein
J4N44_00365	COG2081	HI0933 family
J4N44_00390	COG1322	Protein conserved in bacteria
J4N44_00400	COG3165	ubiquinone biosynthetic process from chorismate
J4N44_00415	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
J4N44_00420	COG0805	protein transport
J4N44_00425	COG0084	hydrolase, TatD family'
J4N44_00440	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
J4N44_00440	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
J4N44_00445	COG0218	Necessary for normal cell division and for the maintenance of normal septation
J4N44_00475	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
J4N44_00485	COG2204	response regulator
J4N44_00490	COG3852	Histidine kinase
J4N44_00500	COG0174	glutamine synthetase
J4N44_00505	COG1217	gtp-binding protein TYPA
J4N44_00525	COG1490	D-aminoacyl-tRNA deacylase activity
J4N44_00530	COG0456	acetyltransferase
J4N44_00550	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
J4N44_00555	COG3031	protein transport across the cell outer membrane
J4N44_00565	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
J4N44_00570	COG1459	type II secretion system
J4N44_00575	COG2165	general secretion pathway protein
J4N44_00580	COG2165	general secretion pathway protein
J4N44_00585	COG2165	general secretion pathway protein
J4N44_00590	COG4795	General secretion pathway protein
J4N44_00595	COG3156	type II secretion system protein K
J4N44_00600	COG3297	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
J4N44_00605	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
J4N44_00615	COG1218	3'(2'),5'-bisphosphate nucleotidase
J4N44_00620	COG0494	nUDIX hydrolase
J4N44_00630	COG1040	competence protein
J4N44_00645	COG2183	response to ionizing radiation
J4N44_00655	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
J4N44_00670	COG2233	PERMEase
J4N44_00680	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
J4N44_00685	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
J4N44_00690	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
J4N44_00695	COG1758	RNA polymerase activity
J4N44_00700	COG0194	GDP metabolic process
J4N44_00715	COG0848	biopolymer transport protein
J4N44_00720	COG0811	peptide transport
J4N44_00740	COG4174	ABC transporter (Permease)
J4N44_00745	COG4239	(ABC) transporter, permease
J4N44_00750	COG0747	negative chemotaxis
J4N44_00755	COG0444	Belongs to the ABC transporter superfamily
J4N44_00760	COG4608	Belongs to the ABC transporter superfamily
J4N44_00785	COG0745	RESPONSE REGULATOR receiver
J4N44_00790	COG1561	YicC-like family, N-terminal region
J4N44_00795	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
J4N44_00800	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
J4N44_00805	COG1560	Kdo2-lipid A biosynthetic process
J4N44_00815	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
J4N44_00840	COG2194	sulfuric ester hydrolase activity
J4N44_00855	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
J4N44_00870	COG0463	Glycosyl transferase, family 2
J4N44_00875	COG0859	PFAM glycosyl transferase family 9
J4N44_00880	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
J4N44_00885	COG3642	lipopolysaccharide core region biosynthetic process
J4N44_00905	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
J4N44_00915	COG1028	Short-chain dehydrogenase reductase Sdr
J4N44_00930	COG1021	2,3-dihydroxybenzoate-AMP ligase
J4N44_00935	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
J4N44_00950	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
J4N44_00955	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
J4N44_00960	COG2089	acid synthase
J4N44_00970	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
J4N44_00985	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
J4N44_00995	COG1028	Short-chain dehydrogenase reductase Sdr
J4N44_01010	COG1519	Transferase
J4N44_01015	COG0859	PFAM glycosyl transferase family 9
J4N44_01020	COG1560	Kdo2-lipid A biosynthetic process
J4N44_01030	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
J4N44_01090	COG1216	Glycosyl transferase, family 2
J4N44_01100	COG0438	transferase activity, transferring glycosyl groups
J4N44_01100	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
J4N44_01105	COG0438	transferase activity, transferring glycosyl groups
J4N44_01110	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
J4N44_01115	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
J4N44_01135	COG1482	cell wall glycoprotein biosynthetic process
J4N44_01150	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
J4N44_01165	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
J4N44_01170	COG0149	triose-phosphate isomerase activity
J4N44_01200	COG1494	fructose-1,6-bisphosphatase
J4N44_01210	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
J4N44_01215	COG1575	Belongs to the MenA family. Type 1 subfamily
J4N44_01235	COG1609	Transcriptional regulator
J4N44_01240	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
J4N44_01245	COG0254	rRNA binding
J4N44_01260	COG0088	Forms part of the polypeptide exit tunnel
J4N44_01280	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
J4N44_01330	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
J4N44_01345	COG1841	ribosomal large subunit assembly
J4N44_01350	COG0200	Binds to the 23S rRNA
J4N44_01355	COG0201	protein transport
J4N44_01360	COG0257	Belongs to the bacterial ribosomal protein bL36 family
J4N44_01365	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
J4N44_01370	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
J4N44_01380	COG0202	RNA polymerase activity
J4N44_01385	COG0203	ribosomal protein L17
J4N44_01395	COG0545	Peptidyl-prolyl cis-trans isomerase
J4N44_01410	COG2153	protein acetylation
J4N44_01415	COG0513	Belongs to the DEAD box helicase family
J4N44_01425	COG0737	Belongs to the 5'-nucleotidase family
J4N44_01430	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
J4N44_01430	COG1648	precorrin-2 dehydrogenase activity
J4N44_01445	COG3273	potassium ion transport
J4N44_01445	COG0471	metal ion transport
J4N44_01450	COG0529	Catalyzes the synthesis of activated sulfate
J4N44_01470	COG1136	(ABC) transporter
J4N44_01485	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
J4N44_01495	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
J4N44_01500	COG0729	surface antigen
J4N44_01510	COG2105	PFAM AIG2 family protein
J4N44_01520	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
J4N44_01530	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
J4N44_01535	COG0163	prenyltransferase activity
J4N44_01540	COG4143	(ABC) transporter
J4N44_01545	COG1178	ABC-type Fe3 transport system permease component
J4N44_01550	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
J4N44_01585	COG0142	geranyltranstransferase activity
J4N44_01590	COG0261	This protein binds to 23S rRNA in the presence of protein L20
J4N44_01600	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
J4N44_01605	COG2966	Psort location CytoplasmicMembrane, score
J4N44_01610	COG3610	response to peptide
J4N44_01630	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
J4N44_01635	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
J4N44_01640	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
J4N44_01645	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
J4N44_01650	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
J4N44_01670	COG0473	3-isopropylmalate dehydrogenase activity
J4N44_01675	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
J4N44_01685	COG0671	phosphoesterase, PA-phosphatase related
J4N44_01695	COG0583	DNA-binding transcription factor activity
J4N44_01700	COG1022	Amp-dependent synthetase and ligase
J4N44_01705	COG0028	Belongs to the TPP enzyme family
J4N44_01710	COG0440	acetolactate synthase activity
J4N44_01715	COG3706	GGDEF domain
J4N44_01725	COG0469	pyruvate kinase activity
J4N44_01730	COG1349	DNA-binding transcription factor activity
J4N44_01735	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
J4N44_01755	COG5002	protein histidine kinase activity
J4N44_01760	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
J4N44_01765	COG3722	fumarate hydratase activity
J4N44_01775	COG2213	PTS system mannitol-specific
J4N44_01775	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
J4N44_01880	COG0358	DNA primase activity
J4N44_01885	COG1610	YqeY-like protein
J4N44_01890	COG0828	Belongs to the bacterial ribosomal protein bS21 family
J4N44_01895	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
J4N44_01900	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
J4N44_01910	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
J4N44_01915	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
J4N44_01930	COG3267	Type II secretory pathway component ExeA
J4N44_01930	COG3409	Peptidoglycan-binding domain 1 protein
J4N44_01940	COG4991	sh3 domain protein
J4N44_01945	COG0306	phosphate transporter
J4N44_01950	COG1392	Phosphate transport regulator
J4N44_01955	COG3025	triphosphatase activity
J4N44_01960	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
J4N44_01970	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
J4N44_01980	COG1538	Outer membrane efflux protein
J4N44_01985	COG0494	nUDIX hydrolase
J4N44_01990	COG3151	Protein conserved in bacteria
J4N44_02000	COG3150	esterase
J4N44_02010	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
J4N44_02015	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
J4N44_02025	COG3105	Protein conserved in bacteria
J4N44_02030	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
J4N44_02045	COG0723	plastoquinol--plastocyanin reductase activity
J4N44_02050	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
J4N44_02055	COG2857	Cytochrome c1
J4N44_02060	COG0625	glutathione transferase activity
J4N44_02065	COG2969	positive regulation of protein catabolic process
J4N44_02070	COG2823	Periplasmic or secreted lipoprotein
J4N44_02075	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
J4N44_02090	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
J4N44_02105	COG3116	cell division
J4N44_02110	COG0768	penicillin binding
J4N44_02115	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
J4N44_02120	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
J4N44_02135	COG0772	Belongs to the SEDS family
J4N44_02150	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
J4N44_02155	COG0849	cell division
J4N44_02160	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
J4N44_02175	COG0494	nUDIX hydrolase
J4N44_02185	COG0505	Belongs to the CarA family
J4N44_02190	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
J4N44_02205	COG0730	response to heat
J4N44_02210	COG0583	DNA-binding transcription factor activity
J4N44_02215	COG2860	membrane
J4N44_02240	COG0493	'glutamate synthase
J4N44_02245	COG0067	glutamate synthase
J4N44_02245	COG0069	glutamate synthase activity
J4N44_02245	COG0070	glutamate synthase
J4N44_02255	COG0067	glutamate synthase
J4N44_02255	COG0069	glutamate synthase activity
J4N44_02255	COG0070	glutamate synthase
J4N44_02260	COG1242	4 iron, 4 sulfur cluster binding
J4N44_02265	COG4251	negative regulation of phosphorylation
J4N44_02265	COG2203	Gaf domain
J4N44_02265	COG3706	GGDEF domain
J4N44_02265	COG5001	Diguanylate cyclase
J4N44_02275	COG0784	Response regulator, receiver
J4N44_02275	COG2198	Histidine kinase
J4N44_02275	COG5002	protein histidine kinase activity
J4N44_02285	COG0745	RESPONSE REGULATOR receiver
J4N44_02295	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
J4N44_02310	COG0083	homoserine kinase activity
J4N44_02315	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
J4N44_02320	COG0431	NADPH-dependent FMN reductase
J4N44_02350	COG1115	amino acid carrier protein
J4N44_02355	COG3022	response to hydroperoxide
J4N44_02365	COG0513	Belongs to the DEAD box helicase family
J4N44_02380	COG0716	FMN binding
J4N44_02385	COG4974	Belongs to the 'phage' integrase family
J4N44_02390	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
J4N44_02395	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
J4N44_02420	COG0667	Aldo Keto reductase
J4N44_02440	COG3605	phosphoenolpyruvate-protein phosphotransferase activity
J4N44_02445	COG0730	response to heat
J4N44_02460	COG1283	sodium-dependent phosphate transmembrane transporter activity
J4N44_02465	COG0583	DNA-binding transcription factor activity
J4N44_02470	COG0640	Transcriptional regulator
J4N44_02475	COG0268	Binds directly to 16S ribosomal RNA
J4N44_02480	COG0728	peptidoglycan biosynthetic process
J4N44_02485	COG0196	riboflavin kinase activity
J4N44_02500	COG1047	Peptidyl-prolyl cis-trans
J4N44_02505	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
J4N44_02510	COG3279	Response regulator of the LytR AlgR family
J4N44_02515	COG3275	phosphorelay sensor kinase activity
J4N44_02520	COG1966	Carbon starvation protein
J4N44_02540	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
J4N44_02550	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
J4N44_02555	COG0287	Prephenate dehydrogenase
J4N44_02555	COG1605	Chorismate mutase
J4N44_02560	COG0739	heme binding
J4N44_02570	COG0488	(ABC) transporter
J4N44_02585	COG1986	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions
J4N44_02590	COG1605	Chorismate mutase
J4N44_02590	COG0077	Prephenate dehydratase
J4N44_02595	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
J4N44_02600	COG0741	lytic transglycosylase activity
J4N44_02605	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
J4N44_02610	COG0564	pseudouridine synthase activity
J4N44_02615	COG1496	oxidoreductase activity
J4N44_02620	COG0542	response to heat
J4N44_02675	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
J4N44_02680	COG0826	peptidase U32
J4N44_02690	COG0745	RESPONSE REGULATOR receiver
J4N44_02695	COG5002	protein histidine kinase activity
J4N44_02705	COG0248	Ppx GppA phosphatase
J4N44_02710	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
J4N44_02715	COG0573	inorganic phosphate transmembrane transporter activity
J4N44_02720	COG0581	inorganic phosphate transmembrane transporter activity
J4N44_02725	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
J4N44_02730	COG0704	Plays a role in the regulation of phosphate uptake
J4N44_02760	COG0450	alkyl hydroperoxide reductase
J4N44_02765	COG0583	DNA-binding transcription factor activity
J4N44_02770	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
J4N44_02780	COG0517	IMP dehydrogenase activity
J4N44_02805	COG1862	Preprotein translocase
J4N44_02810	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
J4N44_02815	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
J4N44_02825	COG0483	inositol monophosphate 1-phosphatase activity
J4N44_02830	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
J4N44_02845	COG0822	iron-sulfur transferase activity
J4N44_02850	COG0316	Belongs to the HesB IscA family
J4N44_02865	COG0633	Ferredoxin
J4N44_02870	COG2975	iron-sulfur cluster assembly
J4N44_02905	COG2976	Protein conserved in bacteria
J4N44_02910	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
J4N44_02925	COG2203	Gaf domain
J4N44_02925	COG2199	diguanylate cyclase activity
J4N44_02940	COG0516	GMP reductase activity
J4N44_02940	COG0517	IMP dehydrogenase activity
J4N44_02950	COG1757	Na H antiporter
J4N44_02960	COG1584	GPR1 FUN34 yaaH family protein
J4N44_02965	COG1115	amino acid carrier protein
J4N44_02975	COG0583	DNA-binding transcription factor activity
J4N44_02980	COG0668	transmembrane transport
J4N44_02985	COG2873	o-acetylhomoserine
J4N44_02990	COG0316	Belongs to the HesB IscA family
J4N44_02995	COG0719	Fe-S assembly protein
J4N44_03000	COG0396	ATPase activity
J4N44_03005	COG0719	Fe-S assembly protein
J4N44_03025	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
J4N44_03045	COG1289	transmembrane transporter activity
J4N44_03050	COG0583	DNA-binding transcription factor activity
J4N44_03065	COG2867	negative regulation of translational initiation
J4N44_03070	COG2914	Belongs to the UPF0125 (RnfH) family
J4N44_03075	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
J4N44_03080	COG0497	DNA recombination
J4N44_03100	COG1301	dicarboxylic acid transport
J4N44_03120	COG4969	Belongs to the N-Me-Phe pilin family
J4N44_03140	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
J4N44_03145	COG0590	tRNA wobble adenosine to inosine editing
J4N44_03155	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
J4N44_03155	COG0047	phosphoribosylformylglycinamidine synthase activity
J4N44_03185	COG2195	Cleaves the N-terminal amino acid of tripeptides
J4N44_03190	COG2252	PERMEase
J4N44_03195	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
J4N44_03200	COG1073	alpha beta
J4N44_03215	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
J4N44_03220	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
J4N44_03225	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
J4N44_03225	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
J4N44_03250	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
J4N44_03255	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
J4N44_03265	COG0142	geranyltranstransferase activity
J4N44_03275	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
J4N44_03290	COG0583	DNA-binding transcription factor activity
J4N44_03300	COG2363	Small membrane protein
J4N44_03320	COG1611	Belongs to the LOG family
J4N44_03345	COG5595	Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310)
J4N44_03350	COG0737	Belongs to the 5'-nucleotidase family
J4N44_03360	COG1464	Belongs to the NlpA lipoprotein family
J4N44_03365	COG2011	ABC-type metal ion transport system permease component
J4N44_03370	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
J4N44_03375	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
J4N44_03385	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J4N44_03385	COG1263	PTS System
J4N44_03390	COG0366	Alpha amylase catalytic
J4N44_03405	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
J4N44_03410	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
J4N44_03430	COG1686	Belongs to the peptidase S11 family
J4N44_03435	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
J4N44_03440	COG0772	Belongs to the SEDS family
J4N44_03445	COG0768	penicillin binding
J4N44_03455	COG0799	negative regulation of ribosome biogenesis
J4N44_03460	COG1466	dna polymerase III delta subunit
J4N44_03465	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
J4N44_03475	COG2888	peptidyl-tyrosine sulfation
J4N44_03480	COG0815	Transfers the fatty acyl group on membrane lipoproteins
J4N44_03485	COG4535	Mg2 and Co2 transporter CorC
J4N44_03495	COG1702	phosphate starvation-inducible protein PhoH
J4N44_03505	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
J4N44_03625	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
J4N44_03650	COG2890	protein-(glutamine-N5) methyltransferase activity
J4N44_03655	COG3094	Invasion gene expression up-regulator, SirB
J4N44_03660	COG2912	Transglutaminase-like superfamily
J4N44_03665	COG2877	3-deoxy-8-phosphooctulonate synthase activity
J4N44_03670	COG0737	Belongs to the 5'-nucleotidase family
J4N44_03675	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
J4N44_03680	COG1187	pseudouridine synthase activity
J4N44_03685	COG2840	Smr protein MutS2
J4N44_03725	COG2217	Heavy metal translocating P-type atpase
J4N44_03725	COG2608	mercury ion transmembrane transporter activity
J4N44_03735	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
J4N44_03790	COG0784	Response regulator, receiver
J4N44_03790	COG0835	chemotaxis
J4N44_03795	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
J4N44_03800	COG1815	bacterial-type flagellum-dependent cell motility
J4N44_03805	COG1558	bacterial-type flagellum-dependent cell motility
J4N44_03820	COG4787	bacterial-type flagellum-dependent cell motility
J4N44_03830	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
J4N44_03835	COG1706	bacterial-type flagellum-dependent cell motility
J4N44_03840	COG3951	Flagellar rod assembly protein muramidase FlgJ
J4N44_03840	COG1705	Flagellar rod assembly protein muramidase FlgJ
J4N44_03855	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
J4N44_03865	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
J4N44_03870	COG2190	(PTS) system
J4N44_03875	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
J4N44_03880	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
J4N44_03885	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
J4N44_03890	COG2981	High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway
J4N44_03920	COG0330	HflC and HflK could
J4N44_03925	COG3118	belongs to the thioredoxin family
J4N44_03935	COG0300	oxidoreductase activity
J4N44_03940	COG1090	epimerase
J4N44_03970	COG0622	Phosphoesterase
J4N44_03990	COG3710	Transcriptional regulator
J4N44_04005	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
J4N44_04010	COG3104	oligopeptide transport
J4N44_04020	COG0367	asparagine synthase
J4N44_04025	COG4651	solute:proton antiporter activity
J4N44_04025	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
J4N44_04030	COG1846	Transcriptional regulator
J4N44_04030	COG1940	carbohydrate kinase activity
J4N44_04035	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
J4N44_04040	COG1263	PTS System
J4N44_04040	COG2190	(PTS) system
J4N44_04040	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J4N44_04050	COG2165	general secretion pathway protein
J4N44_04055	COG0735	belongs to the Fur family
J4N44_04065	COG0716	FMN binding
J4N44_04075	COG0596	Alpha beta hydrolase
J4N44_04080	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
J4N44_04085	COG0033	Phosphoglucomutase
J4N44_04095	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
J4N44_04110	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
J4N44_04115	COG1053	succinate dehydrogenase
J4N44_04125	COG0567	Dehydrogenase, E1 component
J4N44_04130	COG0508	dehydrogenase complex catalyzes the overall conversion of
J4N44_04145	COG1108	ABC-type Mn2 Zn2 transport systems permease components
J4N44_04150	COG1121	(ABC) transporter
J4N44_04155	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
J4N44_04160	COG4977	sequence-specific DNA binding
J4N44_04165	COG1918	ferrous iron import across plasma membrane
J4N44_04195	COG3102	Protein conserved in bacteria
J4N44_04200	COG0788	formyltetrahydrofolate deformylase activity
J4N44_04205	COG1199	ATP-dependent helicase activity
J4N44_04210	COG1214	PFAM Peptidase M22, glycoprotease
J4N44_04220	COG3065	identical protein binding
J4N44_04225	COG2267	carboxylic ester hydrolase activity
J4N44_04230	COG0318	PFAM AMP-dependent synthetase and ligase
J4N44_04235	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
J4N44_04240	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
J4N44_04245	COG2894	cell division
J4N44_04260	COG2951	lytic endotransglycosylase activity
J4N44_04270	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
J4N44_04305	COG1028	Short-chain dehydrogenase reductase Sdr
J4N44_04340	COG2986	histidine ammonia-lyase
J4N44_04345	COG1216	Glycosyl transferase, family 2
J4N44_04365	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J4N44_04370	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J4N44_04400	COG2226	methyltransferase
J4N44_04415	COG1028	Short-chain dehydrogenase reductase Sdr
J4N44_04425	COG1169	isochorismate synthase
J4N44_04430	COG1021	2,3-dihydroxybenzoate-AMP ligase
J4N44_04435	COG1535	isochorismatase
J4N44_04435	COG3433	isochorismatase activity
J4N44_04440	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J4N44_04440	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J4N44_04455	COG4771	TonB-dependent receptor
J4N44_04460	COG1253	flavin adenine dinucleotide binding
J4N44_04465	COG0513	Belongs to the DEAD box helicase family
J4N44_04470	COG0569	domain protein
J4N44_04475	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
J4N44_04490	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
J4N44_04495	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
J4N44_04500	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
J4N44_04510	COG4191	Histidine kinase
J4N44_04530	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
J4N44_04535	COG0776	regulation of translation
J4N44_04540	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
J4N44_04565	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
J4N44_04570	COG0436	Aminotransferase
J4N44_04575	COG1169	isochorismate synthase
J4N44_04585	COG0596	Alpha beta hydrolase
J4N44_04590	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
J4N44_04605	COG1263	PTS System
J4N44_04605	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J4N44_04605	COG2190	(PTS) system
J4N44_04610	COG0583	DNA-binding transcription factor activity
J4N44_04620	COG2855	membrane
J4N44_04625	COG0477	Major facilitator Superfamily
J4N44_04675	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
J4N44_04700	COG1522	sequence-specific DNA binding
J4N44_04710	COG1946	Acyl-CoA thioesterase
J4N44_04715	COG3126	Type III secretion system lipoprotein chaperone (YscW)
J4N44_04780	COG0732	type I restriction modification DNA specificity domain
J4N44_04800	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
J4N44_04845	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
J4N44_04850	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
J4N44_04855	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
J4N44_04860	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
J4N44_04865	COG0517	IMP dehydrogenase activity
J4N44_04865	COG0617	tRNA 3'-terminal CCA addition
J4N44_04865	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
J4N44_04875	COG2217	Heavy metal translocating P-type atpase
J4N44_04895	COG0537	adenosine 5'-monophosphoramidase activity
J4N44_04925	COG1252	NADH dehydrogenase
J4N44_04940	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
J4N44_04950	COG4591	ABC-type transport system involved in lipoprotein release permease component
J4N44_04955	COG1136	(ABC) transporter
J4N44_04960	COG4591	ABC-type transport system involved in lipoprotein release permease component
J4N44_04975	COG1132	(ABC) transporter
J4N44_04995	COG2719	SpoVR family
J4N44_05000	COG2718	Belongs to the UPF0229 family
J4N44_05005	COG2766	serine protein kinase
J4N44_05020	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
J4N44_05030	COG1882	Formate acetyltransferase
J4N44_05065	COG0708	Exodeoxyribonuclease III
J4N44_05070	COG0840	transmembrane signaling receptor activity
J4N44_05085	COG0730	response to heat
J4N44_05090	COG1199	ATP-dependent helicase activity
J4N44_05100	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
J4N44_05105	COG1187	pseudouridine synthase activity
J4N44_05115	COG1278	Cold shock
J4N44_05125	COG0542	response to heat
J4N44_05130	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
J4N44_05160	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
J4N44_05165	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
J4N44_05170	COG0297	glycogen (starch) synthase activity
J4N44_05190	COG3070	regulator of competence-specific genes
J4N44_05205	COG0745	RESPONSE REGULATOR receiver
J4N44_05210	COG1434	Gram-negative-bacterium-type cell wall biogenesis
J4N44_05215	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
J4N44_05225	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
J4N44_05230	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
J4N44_05250	COG0189	ligase activity
J4N44_05250	COG4067	protein conserved in archaea
J4N44_05265	COG1801	Protein of unknown function DUF72
J4N44_05280	COG0840	transmembrane signaling receptor activity
J4N44_05285	COG0632	four-way junction helicase activity
J4N44_05295	COG1271	oxidase subunit
J4N44_05300	COG1294	oxidase, subunit
J4N44_05305	COG4890	Cyd operon protein YbgT
J4N44_05315	COG0824	Thioesterase
J4N44_05320	COG0811	peptide transport
J4N44_05335	COG0823	Involved in the tonB-independent uptake of proteins
J4N44_05340	COG2885	chlorophyll binding
J4N44_05345	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
J4N44_05360	COG0673	inositol 2-dehydrogenase activity
J4N44_05365	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
J4N44_05365	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
J4N44_05365	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
J4N44_05370	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J4N44_05375	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J4N44_05380	COG1882	Formate acetyltransferase
J4N44_05385	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
J4N44_05390	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
J4N44_05395	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
J4N44_05400	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J4N44_05405	COG2207	Transcriptional regulator
J4N44_05410	COG0371	Dehydrogenase
J4N44_05415	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
J4N44_05435	COG3766	membrane
J4N44_05445	COG0754	glutathionylspermidine amidase activity
J4N44_05455	COG5002	protein histidine kinase activity
J4N44_05455	COG0784	Response regulator, receiver
J4N44_05535	COG4669	(LipO)protein
J4N44_05580	COG4792	protein secretion
J4N44_05585	COG4791	protein targeting
J4N44_05590	COG4794	Type iii secretion
J4N44_05595	COG4790	Type iii secretion
J4N44_05665	COG0457	Tetratricopeptide repeat
J4N44_05685	COG0789	Transcriptional regulator
J4N44_05690	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
J4N44_05705	COG1263	PTS System
J4N44_05705	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J4N44_05710	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
J4N44_05715	COG1621	beta-fructofuranosidase activity
J4N44_05720	COG2824	Alkylphosphonate utilization operon protein PhnA
J4N44_05735	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
J4N44_05760	COG0534	Mate efflux family protein
J4N44_05765	COG0444	Belongs to the ABC transporter superfamily
J4N44_05770	COG4608	Belongs to the ABC transporter superfamily
J4N44_05775	COG0747	negative chemotaxis
J4N44_05790	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
J4N44_05805	COG2076	Multidrug Resistance protein
J4N44_05840	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J4N44_05845	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
J4N44_05855	COG2186	Transcriptional regulator
J4N44_05865	COG1288	antiporter activity
J4N44_05895	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
J4N44_05910	COG2176	DNA-directed DNA polymerase activity
J4N44_05915	COG0517	IMP dehydrogenase activity
J4N44_05920	COG2186	Transcriptional regulator
J4N44_05925	COG1028	Short-chain dehydrogenase reductase Sdr
J4N44_05930	COG2186	Transcriptional regulator
J4N44_05950	COG1917	Cupin 2, conserved barrel domain protein
J4N44_05955	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
J4N44_05960	COG0800	Aldolase
J4N44_05965	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
J4N44_05975	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
J4N44_06000	COG3568	Endonuclease Exonuclease Phosphatase
J4N44_06010	COG4934	collagen metabolic process
J4N44_06045	COG0686	Belongs to the AlaDH PNT family
J4N44_06055	COG1674	ftsk spoiiie
J4N44_06065	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
J4N44_06085	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
J4N44_06130	COG0300	oxidoreductase activity
J4N44_06145	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
J4N44_06155	COG2268	Band 7 protein
J4N44_06165	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
J4N44_06175	COG0482	sulfurtransferase activity
J4N44_06185	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
J4N44_06195	COG1757	Na H antiporter
J4N44_06210	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
J4N44_06215	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
J4N44_06220	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
J4N44_06220	COG0131	Imidazoleglycerol-phosphate dehydratase
J4N44_06225	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
J4N44_06230	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
J4N44_06240	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
J4N44_06240	COG0140	phosphoribosyl-ATP diphosphatase activity
J4N44_06245	COG3012	SEC-C Motif Domain Protein
J4N44_06250	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
J4N44_06255	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
J4N44_06260	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
J4N44_06265	COG0215	cysteine-tRNA ligase activity
J4N44_06270	COG1435	thymidine kinase activity
J4N44_06275	COG1434	Gram-negative-bacterium-type cell wall biogenesis
J4N44_06300	COG2116	formate transmembrane transporter activity
J4N44_06310	COG0390	transport system, permease component
J4N44_06315	COG4459	periplasmic nitrate reductase
J4N44_06320	COG3005	denitrification pathway
J4N44_06325	COG0243	molybdopterin cofactor binding
J4N44_06340	COG1121	(ABC) transporter
J4N44_06345	COG1108	ABC-type Mn2 Zn2 transport systems permease components
J4N44_06350	COG1108	ABC-type Mn2 Zn2 transport systems permease components
J4N44_06355	COG1227	inorganic diphosphatase activity
J4N44_06365	COG4172	Belongs to the ABC transporter superfamily
J4N44_06375	COG4171	peptide transport system, permease
J4N44_06390	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
J4N44_06395	COG1842	Phage shock protein A
J4N44_06415	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J4N44_06425	COG2818	Glycosylase
J4N44_06430	COG5380	lipid catabolic process
J4N44_06435	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
J4N44_06440	COG0626	cystathionine gamma-synthase activity
J4N44_06450	COG0733	neurotransmitter:sodium symporter activity
J4N44_06460	COG0564	pseudouridine synthase activity
J4N44_06470	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
J4N44_06475	COG1151	hydroxylamine reductase activity
J4N44_06480	COG3604	Transcriptional regulator
J4N44_06490	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
J4N44_06495	COG4136	ATPase activity
J4N44_06500	COG4135	transport system, permease component
J4N44_06505	COG4134	Bacterial extracellular solute-binding protein
J4N44_06510	COG0398	Pfam SNARE associated Golgi protein
J4N44_06520	COG0493	'glutamate synthase
J4N44_06545	COG0659	secondary active sulfate transmembrane transporter activity
J4N44_06555	COG3313	Fe-S protein
J4N44_06610	COG1061	Type III restriction enzyme res subunit
J4N44_06615	COG1187	pseudouridine synthase activity
J4N44_06620	COG2814	Major facilitator Superfamily
J4N44_06630	COG4146	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
J4N44_06640	COG1609	Transcriptional regulator
J4N44_06645	COG0702	epimerase
J4N44_06650	COG0534	Mate efflux family protein
J4N44_06655	COG4181	ATPase activity
J4N44_06685	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
J4N44_06695	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
J4N44_06705	COG1737	Transcriptional regulator
J4N44_06710	COG0076	glutamate decarboxylase activity
J4N44_06720	COG2431	L-lysine efflux transmembrane transporter activity
J4N44_06730	COG3070	regulator of competence-specific genes
J4N44_06745	COG4191	Histidine kinase
J4N44_06745	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J4N44_06755	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
J4N44_06765	COG5002	protein histidine kinase activity
J4N44_06765	COG3447	MASE1 domain protein
J4N44_06765	COG5001	Diguanylate cyclase
J4N44_06785	COG0583	DNA-binding transcription factor activity
J4N44_06790	COG2610	gluconate transmembrane transporter activity
J4N44_06800	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
J4N44_06805	COG4988	ABC transporter
J4N44_06810	COG0492	ferredoxin-NADP+ reductase activity
J4N44_06830	COG3706	GGDEF domain
J4N44_06835	COG0471	metal ion transport
J4N44_06840	COG2949	membrane
J4N44_06850	COG1643	Atp-dependent helicase
J4N44_06890	COG0471	metal ion transport
J4N44_06895	COG4191	Histidine kinase
J4N44_06895	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J4N44_06905	COG3300	MHYT domain
J4N44_06905	COG5001	Diguanylate cyclase
J4N44_06915	COG1280	lysine exporter protein (LysE YggA)
J4N44_06920	COG1328	CTP reductase activity
J4N44_06925	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
J4N44_06935	COG0861	Integral membrane protein TerC family
J4N44_06945	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
J4N44_06955	COG1454	alcohol dehydrogenase
J4N44_06960	COG0814	amino acid
J4N44_06975	COG1120	ATPase activity
J4N44_06980	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
J4N44_06985	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J4N44_06990	COG4774	siderophore transport
J4N44_07005	COG1132	(ABC) transporter
J4N44_07010	COG1132	(ABC) transporter
J4N44_07015	COG2165	general secretion pathway protein
J4N44_07025	COG0583	DNA-binding transcription factor activity
J4N44_07050	COG0443	Heat shock 70 kDa protein
J4N44_07055	COG0443	Heat shock 70 kDa protein
J4N44_07065	COG3706	GGDEF domain
J4N44_07095	COG0243	molybdopterin cofactor binding
J4N44_07100	COG0437	4 iron, 4 sulfur cluster binding
J4N44_07105	COG3302	dmso reductase anchor subunit
J4N44_07120	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
J4N44_07125	COG1643	Atp-dependent helicase
J4N44_07150	COG3063	Type IV pilus biogenesis stability protein PilW
J4N44_07175	COG0531	amino acid
J4N44_07180	COG1280	lysine exporter protein (LysE YggA)
J4N44_07185	COG0583	DNA-binding transcription factor activity
J4N44_07190	COG1560	Kdo2-lipid A biosynthetic process
J4N44_07205	COG1846	Transcriptional regulator
J4N44_07215	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
J4N44_07220	COG2197	response regulator
J4N44_07255	COG1280	lysine exporter protein (LysE YggA)
J4N44_07270	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
J4N44_07275	COG2358	TRAP transporter, solute receptor (TAXI family
J4N44_07280	COG0730	response to heat
J4N44_07305	COG0456	acetyltransferase
J4N44_07315	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
J4N44_07320	COG2815	serine threonine protein kinase
J4N44_07320	COG0515	serine threonine protein kinase
J4N44_07425	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
J4N44_07430	COG0372	Belongs to the citrate synthase family
J4N44_07440	COG2828	Protein conserved in bacteria
J4N44_07470	COG0561	phosphatase activity
J4N44_07475	COG0602	queuosine metabolic process
J4N44_07485	COG2203	Gaf domain
J4N44_07485	COG2199	diguanylate cyclase activity
J4N44_07515	COG3064	Membrane
J4N44_07525	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
J4N44_07535	COG0297	glycogen (starch) synthase activity
J4N44_07565	COG0438	transferase activity, transferring glycosyl groups
J4N44_07575	COG2204	response regulator
J4N44_07595	COG2885	chlorophyll binding
J4N44_07605	COG1793	dna ligase
J4N44_07615	COG0534	Mate efflux family protein
J4N44_07620	COG0307	riboflavin synthase, alpha
J4N44_07630	COG3001	Fructosamine kinase
J4N44_07635	COG2201	protein-glutamate methylesterase activity
J4N44_07640	COG3706	GGDEF domain
J4N44_07650	COG0791	NLP P60 protein
J4N44_07655	COG0840	transmembrane signaling receptor activity
J4N44_07695	COG3148	PFAM DTW domain containing protein
J4N44_07700	COG1940	carbohydrate kinase activity
J4N44_07710	COG0303	'Molybdopterin
J4N44_07720	COG3842	ATPase activity
J4N44_07725	COG4662	Binding-protein-dependent transport system inner membrane component
J4N44_07735	COG2204	response regulator
J4N44_07740	COG4191	Histidine kinase
J4N44_07755	COG0488	(ABC) transporter
J4N44_07760	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
J4N44_07780	COG3381	protein complex oligomerization
J4N44_07790	COG0243	molybdopterin cofactor binding
J4N44_07790	COG3383	formate dehydrogenase (NAD+) activity
J4N44_07795	COG0437	4 iron, 4 sulfur cluster binding
J4N44_07815	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
J4N44_07820	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
J4N44_07830	COG1177	transmembrane transport
J4N44_07840	COG3842	ATPase activity
J4N44_07850	COG2992	FlgJ-related protein
J4N44_07865	COG0589	response to stress
J4N44_07870	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
J4N44_07885	COG2217	Heavy metal translocating P-type atpase
J4N44_07895	COG2010	Cytochrome c
J4N44_07910	COG3278	Belongs to the heme-copper respiratory oxidase family
J4N44_07925	COG0784	Response regulator, receiver
J4N44_07925	COG2205	protein histidine kinase activity
J4N44_08030	COG1067	ATP-dependent peptidase activity
J4N44_08035	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
J4N44_08050	COG0488	(ABC) transporter
J4N44_08075	COG2902	Dehydrogenase
J4N44_08085	COG0308	aminopeptidase N
J4N44_08100	COG3109	RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities
J4N44_08105	COG1956	GAF domain-containing protein
J4N44_08110	COG1132	(ABC) transporter
J4N44_08115	COG2995	paraquat-inducible protein a
J4N44_08120	COG3008	intermembrane lipid transfer
J4N44_08145	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
J4N44_08160	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J4N44_08165	COG4597	amino acid ABC transporter
J4N44_08170	COG0765	amino acid transport
J4N44_08175	COG1126	abc transporter atp-binding protein
J4N44_08180	COG0670	Belongs to the BI1 family
J4N44_08185	COG2920	part of a sulfur-relay system
J4N44_08190	COG1254	Belongs to the acylphosphatase family
J4N44_08240	COG5001	Diguanylate cyclase
J4N44_08240	COG3300	MHYT domain
J4N44_08245	COG4999	Histidine kinase
J4N44_08245	COG3850	Histidine kinase
J4N44_08245	COG3437	response regulator, receiver
J4N44_08245	COG2205	protein histidine kinase activity
J4N44_08260	COG0110	maltose O-acetyltransferase activity
J4N44_08280	COG1846	Transcriptional regulator
J4N44_08290	COG3247	response to pH
J4N44_08295	COG0668	transmembrane transport
J4N44_08305	COG3049	Linear amide C-N hydrolases, choloylglycine hydrolase family
J4N44_08365	COG4964	Belongs to the GSP D family
J4N44_08390	COG2207	Transcriptional regulator
J4N44_08410	COG0589	response to stress
J4N44_08415	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
J4N44_08420	COG0363	glucosamine-6-phosphate deaminase activity
J4N44_08425	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
J4N44_08435	COG4774	siderophore transport
J4N44_08440	COG4565	transcriptional regulatory protein
J4N44_08445	COG3290	protein histidine kinase activity
J4N44_08460	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J4N44_08485	COG0583	DNA-binding transcription factor activity
J4N44_08490	COG2814	Major facilitator Superfamily
J4N44_08500	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
J4N44_08505	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
J4N44_08545	COG2186	Transcriptional regulator
J4N44_08565	COG0583	DNA-binding transcription factor activity
J4N44_08570	COG1404	Belongs to the peptidase S8 family
J4N44_08575	COG1858	cytochrome C peroxidase
J4N44_08580	COG0527	aspartate kinase activity
J4N44_08585	COG0662	Cupin 2, conserved barrel domain protein
J4N44_08590	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
J4N44_08595	COG0456	acetyltransferase
J4N44_08600	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
J4N44_08610	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
J4N44_08615	COG0534	Mate efflux family protein
J4N44_08630	COG1368	sulfuric ester hydrolase activity
J4N44_08670	COG1115	amino acid carrier protein
J4N44_08675	COG1012	belongs to the aldehyde dehydrogenase family
J4N44_08680	COG3284	Transcriptional regulator
J4N44_08715	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
J4N44_08725	COG3051	citrate lyase alpha subunit
J4N44_08730	COG2301	Belongs to the HpcH HpaI aldolase family
J4N44_08740	COG3053	Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase
J4N44_08750	COG3630	sodium ion export across plasma membrane
J4N44_08755	COG0511	ligase activity, forming carbon-carbon bonds
J4N44_08755	COG5016	pyruvate
J4N44_08760	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
J4N44_08770	COG4565	transcriptional regulatory protein
J4N44_08810	COG1051	belongs to the nudix hydrolase family
J4N44_08855	COG0625	glutathione transferase activity
J4N44_08865	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
J4N44_08880	COG2195	Cleaves the N-terminal amino acid of tripeptides
J4N44_08890	COG0601	transmembrane transport
J4N44_08895	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J4N44_08900	COG0444	Belongs to the ABC transporter superfamily
J4N44_08920	COG3291	Pkd domain containing protein
J4N44_08935	COG0642	Histidine kinase
J4N44_08940	COG0745	RESPONSE REGULATOR receiver
J4N44_08950	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
J4N44_08955	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J4N44_08975	COG0813	purine-nucleoside phosphorylase activity
J4N44_08980	COG1177	transmembrane transport
J4N44_08985	COG1176	ABC-type spermidine putrescine transport system, permease component I
J4N44_08990	COG3842	ATPase activity
J4N44_08995	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
J4N44_09000	COG2423	ornithine cyclodeaminase activity
J4N44_09010	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
J4N44_09015	COG3938	Belongs to the proline racemase family
J4N44_09045	COG1451	nucleotide metabolic process
J4N44_09070	COG0583	DNA-binding transcription factor activity
J4N44_09125	COG4139	cobalamin transport
J4N44_09140	COG2062	phosphohistidine phosphatase, SixA
J4N44_09150	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
J4N44_09160	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
J4N44_09165	COG0702	epimerase
J4N44_09170	COG1823	symporter activity
J4N44_09180	COG2925	Exonuclease
J4N44_09190	COG1346	cytolysis
J4N44_09255	COG0072	phenylalanine-tRNA ligase activity
J4N44_09255	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J4N44_09265	COG3706	GGDEF domain
J4N44_09310	COG0251	oxidation-reduction process
J4N44_09320	COG0291	Belongs to the bacterial ribosomal protein bL35 family
J4N44_09345	COG2188	Transcriptional regulator
J4N44_09355	COG0010	Belongs to the arginase family
J4N44_09365	COG2986	histidine ammonia-lyase
J4N44_09380	COG0277	FAD linked oxidase domain protein
J4N44_09380	COG0247	lactate metabolic process
J4N44_09415	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
J4N44_09445	COG0519	Catalyzes the synthesis of GMP from XMP
J4N44_09610	COG3340	Belongs to the peptidase S51 family
J4N44_09705	COG2026	Addiction module toxin, RelE StbE family
J4N44_09730	COG1192	Involved in chromosome partitioning
J4N44_10030	COG0791	NLP P60 protein
J4N44_10420	COG0791	NLP P60 protein
J4N44_10425	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
J4N44_10565	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
J4N44_10580	COG3106	COG3106 Predicted ATPase
J4N44_10595	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
J4N44_10600	COG0784	Response regulator, receiver
J4N44_10600	COG2205	protein histidine kinase activity
J4N44_10615	COG0814	amino acid
J4N44_10620	COG1760	l-serine dehydratase
J4N44_10625	COG3300	MHYT domain
J4N44_10625	COG5001	Diguanylate cyclase
J4N44_10640	COG2197	response regulator
J4N44_10645	COG0720	synthase
J4N44_10650	COG0840	transmembrane signaling receptor activity
J4N44_10655	COG0017	Asparaginyl-tRNA synthetase
J4N44_10670	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
J4N44_10685	COG2770	Histidine kinase
J4N44_10685	COG3437	response regulator, receiver
J4N44_10690	COG1448	Aminotransferase
J4N44_10710	COG0840	transmembrane signaling receptor activity
J4N44_10715	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
J4N44_10720	COG1846	Transcriptional regulator
J4N44_10745	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
J4N44_10760	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
J4N44_10765	COG3108	Peptidase M15
J4N44_10770	COG2989	Protein conserved in bacteria
J4N44_10795	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
J4N44_10805	COG3088	subunit of a heme lyase
J4N44_10805	COG4235	cytochrome complex assembly
J4N44_10815	COG1138	Cytochrome C-type biogenesis protein
J4N44_10820	COG3301	Polysulphide reductase, NrfD
J4N44_10825	COG0437	4 iron, 4 sulfur cluster binding
J4N44_10835	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
J4N44_10855	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
J4N44_10860	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
J4N44_10865	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
J4N44_10875	COG1058	Belongs to the CinA family
J4N44_10875	COG1546	Belongs to the CinA family
J4N44_10890	COG0019	diaminopimelate decarboxylase activity
J4N44_10930	COG0322	excinuclease ABC activity
J4N44_10935	COG2197	response regulator
J4N44_10940	COG0417	DNA replication proofreading
J4N44_10960	COG1187	pseudouridine synthase activity
J4N44_10970	COG0009	L-threonylcarbamoyladenylate synthase
J4N44_10975	COG0613	PHP domain protein
J4N44_10985	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
J4N44_10990	COG0512	Glutamine amidotransferase of anthranilate synthase
J4N44_11000	COG0134	indole-3-glycerol-phosphate synthase activity
J4N44_11000	COG0135	phosphoribosylanthranilate isomerase activity
J4N44_11010	COG0159	tryptophan synthase activity
J4N44_11015	COG1301	dicarboxylic acid transport
J4N44_11040	COG1607	acyl-coa hydrolase
J4N44_11045	COG2350	Protein conserved in bacteria
J4N44_11075	COG5001	Diguanylate cyclase
J4N44_11075	COG1716	ATPase activity
J4N44_11080	COG1032	radical SAM domain protein
J4N44_11100	COG0446	pyridine nucleotide-disulphide oxidoreductase
J4N44_11115	COG2964	Protein conserved in bacteria
J4N44_11120	COG0840	transmembrane signaling receptor activity
J4N44_11130	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
J4N44_11135	COG0463	Glycosyl transferase, family 2
J4N44_11140	COG0745	RESPONSE REGULATOR receiver
J4N44_11145	COG5002	protein histidine kinase activity
J4N44_11145	COG3850	Histidine kinase
J4N44_11180	COG1846	Transcriptional regulator
J4N44_11225	COG0577	efflux transmembrane transporter activity
J4N44_11225	COG1136	(ABC) transporter
J4N44_11230	COG1136	(ABC) transporter
J4N44_11230	COG0577	efflux transmembrane transporter activity
J4N44_11235	COG0577	efflux transmembrane transporter activity
J4N44_11260	COG3153	acetyltransferase
J4N44_11285	COG3118	belongs to the thioredoxin family
J4N44_11290	COG4232	protein-disulfide reductase activity
J4N44_11305	COG2995	paraquat-inducible protein a
J4N44_11310	COG3008	intermembrane lipid transfer
J4N44_11310	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
J4N44_11315	COG3009	Protein conserved in bacteria
J4N44_11370	COG4166	transmembrane transport
J4N44_11380	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
J4N44_11385	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
J4N44_11395	COG0539	negative regulation of cytoplasmic translation
J4N44_11405	COG0616	signal peptide processing
J4N44_11410	COG1028	Short-chain dehydrogenase reductase Sdr
J4N44_11430	COG0784	Response regulator, receiver
J4N44_11430	COG0835	chemotaxis
J4N44_11435	COG1940	carbohydrate kinase activity
J4N44_11445	COG4667	esterase of the alpha-beta hydrolase superfamily
J4N44_11460	COG0733	neurotransmitter:sodium symporter activity
J4N44_11475	COG1263	PTS System
J4N44_11475	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J4N44_11480	COG0084	hydrolase, TatD family'
J4N44_11495	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
J4N44_11525	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
J4N44_11540	COG1399	metal-binding, possibly nucleic acid-binding protein
J4N44_11545	COG0424	maF-like protein
J4N44_11550	COG0564	pseudouridine synthase activity
J4N44_11560	COG1530	ribonuclease E activity
J4N44_11565	COG0659	secondary active sulfate transmembrane transporter activity
J4N44_11570	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
J4N44_11575	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
J4N44_11605	COG2186	Transcriptional regulator
J4N44_11615	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
J4N44_11620	COG0653	protein targeting
J4N44_11625	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
J4N44_11630	COG3706	GGDEF domain
J4N44_11635	COG0366	Alpha amylase catalytic
J4N44_11640	COG1122	ATPase activity
J4N44_11645	COG4120	Belongs to the binding-protein-dependent transport system permease family
J4N44_11665	COG0280	phosphate acetyltransferase
J4N44_11665	COG0857	belongs to the CobB CobQ family
J4N44_11670	COG3174	membrane
J4N44_11675	COG0435	Glutathione S-transferase
J4N44_11685	COG0444	Belongs to the ABC transporter superfamily
J4N44_11690	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J4N44_11695	COG0601	transmembrane transport
J4N44_11705	COG0314	molybdopterin synthase activity
J4N44_11710	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
J4N44_11720	COG0521	Mo-molybdopterin cofactor biosynthetic process
J4N44_11725	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
J4N44_11730	COG0391	Required for morphogenesis under gluconeogenic growth conditions
J4N44_11745	COG0556	nucleotide-excision repair
J4N44_11755	COG1882	Formate acetyltransferase
J4N44_11760	COG4657	Part of a membrane complex involved in electron transport
J4N44_11770	COG4656	Part of a membrane complex involved in electron transport
J4N44_11775	COG4658	electron transport chain
J4N44_11780	COG4659	FMN binding
J4N44_11785	COG4660	Part of a membrane complex involved in electron transport
J4N44_11790	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
J4N44_11795	COG0346	lactoylglutathione lyase activity
J4N44_11805	COG2885	chlorophyll binding
J4N44_11815	COG2056	Na+-H+ antiporter family
J4N44_11825	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
J4N44_11845	COG1012	belongs to the aldehyde dehydrogenase family
J4N44_11845	COG1454	alcohol dehydrogenase
J4N44_11850	COG2095	MarC family integral membrane protein
J4N44_11855	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
J4N44_11860	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
J4N44_11865	COG1757	Na H antiporter
J4N44_11890	COG3083	sulfuric ester hydrolase activity
J4N44_11905	COG0123	including yeast histone deacetylase and acetoin utilization protein
J4N44_11920	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
J4N44_11925	COG0778	Nitroreductase
J4N44_11930	COG1902	pentaerythritol trinitrate reductase activity
J4N44_11930	COG0446	pyridine nucleotide-disulphide oxidoreductase
J4N44_11935	COG0616	signal peptide processing
J4N44_11940	COG0252	asparaginase activity
J4N44_11945	COG3139	Protein of unknown function (DUF1315)
J4N44_11955	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
J4N44_11960	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
J4N44_11980	COG2226	methyltransferase
J4N44_12000	COG1785	Belongs to the alkaline phosphatase family
J4N44_12010	COG0346	lactoylglutathione lyase activity
J4N44_12015	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
J4N44_12020	COG0668	transmembrane transport
J4N44_12025	COG2261	transglycosylase associated protein
J4N44_12035	COG2983	Belongs to the UPF0260 family
J4N44_12055	COG0251	oxidation-reduction process
J4N44_12060	COG0814	amino acid
J4N44_12065	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
J4N44_12070	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
J4N44_12080	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
J4N44_12090	COG2832	Protein of unknown function (DUF454)
J4N44_12095	COG0745	RESPONSE REGULATOR receiver
J4N44_12100	COG0583	DNA-binding transcription factor activity
J4N44_12105	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
J4N44_12110	COG1286	toxin biosynthetic process
J4N44_12115	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
J4N44_12120	COG0285	dihydrofolate synthase activity
J4N44_12140	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
J4N44_12145	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
J4N44_12150	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
J4N44_12170	COG3101	peptidyl-lysine hydroxylation
J4N44_12175	COG2860	membrane
J4N44_12185	COG2890	protein-(glutamine-N5) methyltransferase activity
J4N44_12195	COG2062	phosphohistidine phosphatase, SixA
J4N44_12215	COG0183	Belongs to the thiolase family
J4N44_12235	COG2067	long-chain fatty acid transport protein
J4N44_12240	COG2853	Lipoprotein
J4N44_12245	COG4235	cytochrome complex assembly
J4N44_12245	COG3088	subunit of a heme lyase
J4N44_12255	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
J4N44_12260	COG1138	Cytochrome C-type biogenesis protein
J4N44_12275	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
J4N44_12280	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
J4N44_12285	COG4133	protoheme IX ABC transporter activity
J4N44_12295	COG0835	chemotaxis
J4N44_12305	COG1192	Involved in chromosome partitioning
J4N44_12310	COG2201	protein-glutamate methylesterase activity
J4N44_12315	COG0643	Histidine kinase
J4N44_12315	COG0784	Response regulator, receiver
J4N44_12315	COG2198	Histidine kinase
J4N44_12320	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
J4N44_12355	COG1684	flagellar biosynthetic protein fliR
J4N44_12360	COG1987	bacterial-type flagellum assembly
J4N44_12415	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
J4N44_12425	COG1677	Flagellar hook-basal body complex protein FliE
J4N44_12445	COG1516	flagellar protein fliS
J4N44_12455	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
J4N44_12460	COG1334	flagellar protein FlaG
J4N44_12465	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
J4N44_12475	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
J4N44_12480	COG2211	Major facilitator Superfamily
J4N44_12485	COG1486	melibiose metabolic process
J4N44_12490	COG2169	Transcriptional regulator
J4N44_12495	COG2837	iron assimilation
J4N44_12520	COG1393	Belongs to the ArsC family
J4N44_12540	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
J4N44_12545	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
J4N44_12550	COG2716	regulation of RNA biosynthetic process
J4N44_12555	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
J4N44_12570	COG4783	chaperone-mediated protein folding
J4N44_12575	COG1393	Belongs to the ArsC family
J4N44_12595	COG2233	PERMEase
J4N44_12600	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
J4N44_12605	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
J4N44_12610	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
J4N44_12615	COG0121	glutamine amidotransferase
J4N44_12620	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
J4N44_12645	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
J4N44_12655	COG2226	methyltransferase
J4N44_12665	COG0741	lytic transglycosylase activity
J4N44_12665	COG1388	LysM domain
J4N44_12680	COG0347	Belongs to the P(II) protein family
J4N44_12700	COG0587	DNA-directed DNA polymerase activity
J4N44_12725	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
J4N44_12730	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
J4N44_12740	COG0750	zinc metalloprotease
J4N44_12750	COG0575	Belongs to the CDS family
J4N44_12755	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
J4N44_12780	COG0024	Methionine aminopeptidase
J4N44_12795	COG0564	pseudouridine synthase activity
J4N44_12800	COG3098	single-species biofilm formation
J4N44_12835	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
J4N44_12860	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
J4N44_12875	COG1720	tRNA m6t6A37 methyltransferase activity
J4N44_12900	COG0733	neurotransmitter:sodium symporter activity
J4N44_12915	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
J4N44_12920	COG0514	ATP-dependent DNA helicase (RecQ)
J4N44_12925	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
J4N44_12940	COG1477	protein flavinylation
J4N44_12950	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
J4N44_12975	COG0271	Belongs to the BolA IbaG family
J4N44_13005	COG1595	DNA-templated transcription, initiation
J4N44_13020	COG3248	Nucleoside-binding outer membrane protein
J4N44_13025	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
J4N44_13030	COG0693	protein deglycase activity
J4N44_13035	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
J4N44_13040	COG2166	iron-sulfur cluster assembly
J4N44_13045	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
J4N44_13050	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
J4N44_13060	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
J4N44_13060	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
J4N44_13080	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
J4N44_13085	COG1074	ATP-dependent DNA helicase activity
J4N44_13090	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
J4N44_13110	COG3141	response to X-ray
J4N44_13125	COG2171	N-acyltransferase activity
J4N44_13130	COG0584	glycerophosphoryl diester phosphodiesterase
J4N44_13135	COG2271	Major facilitator Superfamily
J4N44_13140	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
J4N44_13150	COG1349	DNA-binding transcription factor activity
J4N44_13155	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
J4N44_13180	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J4N44_13195	COG2017	converts alpha-aldose to the beta-anomer
J4N44_13210	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
J4N44_13215	COG0768	penicillin binding
J4N44_13225	COG1609	Transcriptional regulator
J4N44_13230	COG3250	beta-galactosidase activity
J4N44_13235	COG2731	YhcH YjgK YiaL family protein
J4N44_13240	COG0531	amino acid
J4N44_13245	COG0583	DNA-binding transcription factor activity
J4N44_13305	COG4964	Belongs to the GSP D family
J4N44_13330	COG2169	Transcriptional regulator
J4N44_13335	COG1022	Amp-dependent synthetase and ligase
J4N44_13345	COG0583	DNA-binding transcription factor activity
J4N44_13350	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
J4N44_13355	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
J4N44_13365	COG0560	Phosphoserine phosphatase
J4N44_13375	COG0813	purine-nucleoside phosphorylase activity
J4N44_13385	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
J4N44_13395	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
J4N44_13400	COG0084	hydrolase, TatD family'
J4N44_13410	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
J4N44_13415	COG3706	GGDEF domain
J4N44_13435	COG3153	acetyltransferase
J4N44_13440	COG3154	lipid carrier protein
J4N44_13450	COG0826	peptidase U32
J4N44_13455	COG0826	peptidase U32
J4N44_13460	COG0534	Mate efflux family protein
J4N44_13480	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
J4N44_13500	COG0195	Participates in both transcription termination and antitermination
J4N44_13520	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
J4N44_13530	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
J4N44_13535	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
J4N44_13545	COG1534	Rna-binding protein
J4N44_13550	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
J4N44_13555	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
J4N44_13560	COG2027	D-alanyl-D-alanine carboxypeptidase
J4N44_13570	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
J4N44_13575	COG0739	heme binding
J4N44_13590	COG0316	Belongs to the HesB IscA family
J4N44_13600	COG0628	permease
J4N44_13615	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J4N44_13615	COG2198	Histidine kinase
J4N44_13615	COG2205	protein histidine kinase activity
J4N44_13615	COG0784	Response regulator, receiver
J4N44_13620	COG0747	negative chemotaxis
J4N44_13630	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J4N44_13635	COG0444	Belongs to the ABC transporter superfamily
J4N44_13640	COG4608	Belongs to the ABC transporter superfamily
J4N44_13650	COG2971	BadF BadG BcrA BcrD
J4N44_13665	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
J4N44_13670	COG3842	ATPase activity
J4N44_13680	COG1840	ABC-type Fe3 transport system, periplasmic component
J4N44_13685	COG0004	ammonium transporteR
J4N44_13700	COG1049	propionate catabolic process, 2-methylcitrate cycle
J4N44_13705	COG1752	Esterase of the alpha-beta hydrolase superfamily
J4N44_13710	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
J4N44_13715	COG1643	Atp-dependent helicase
J4N44_13730	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
J4N44_13740	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
J4N44_13755	COG1560	Kdo2-lipid A biosynthetic process
J4N44_13760	COG0842	Transport permease protein
J4N44_13765	COG1131	(ABC) transporter
J4N44_13770	COG0659	secondary active sulfate transmembrane transporter activity
J4N44_13775	COG0288	reversible hydration of carbon dioxide
J4N44_13790	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
J4N44_13795	COG0508	dehydrogenase complex catalyzes the overall conversion of
J4N44_13800	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
J4N44_13805	COG2186	Transcriptional regulator
J4N44_13825	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
J4N44_13830	COG1459	type II secretion system
J4N44_13840	COG0237	dephospho-CoA kinase activity
J4N44_13845	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
J4N44_13850	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
J4N44_13875	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
J4N44_13880	COG4137	Cytochrome C assembly protein
J4N44_13885	COG4536	flavin adenine dinucleotide binding
J4N44_13905	COG0612	Peptidase, M16
J4N44_13910	COG1238	metal cluster binding
J4N44_13920	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
J4N44_13925	COG0511	ligase activity, forming carbon-carbon bonds
J4N44_13925	COG5016	pyruvate
J4N44_13930	COG3630	sodium ion export across plasma membrane
J4N44_13990	COG0527	aspartate kinase activity
J4N44_14005	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
J4N44_14010	COG1546	Belongs to the CinA family
J4N44_14020	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
J4N44_14050	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
J4N44_14060	COG0148	phosphopyruvate hydratase activity
J4N44_14070	COG3956	TIGRFAM MazG family protein
J4N44_14075	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
J4N44_14095	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
J4N44_14100	COG1381	Involved in DNA repair and RecF pathway recombination
J4N44_14105	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
J4N44_14125	COG3086	response to oxidative stress
J4N44_14140	COG1595	DNA-templated transcription, initiation
J4N44_14145	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
J4N44_14155	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
J4N44_14175	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
J4N44_14180	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
J4N44_14190	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
J4N44_14200	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
J4N44_14210	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
J4N44_14220	COG0583	DNA-binding transcription factor activity
J4N44_14235	COG0668	transmembrane transport
J4N44_14240	COG0191	fructose-bisphosphate aldolase activity
J4N44_14260	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
J4N44_14280	COG2356	endonuclease I
J4N44_14285	COG1385	rRNA (uridine-N3-)-methyltransferase activity
J4N44_14290	COG0189	ligase activity
J4N44_14295	COG1678	Uncharacterized ACR, COG1678
J4N44_14300	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
J4N44_14315	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
J4N44_14320	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
J4N44_14325	COG0762	integral membrane protein
J4N44_14340	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
J4N44_14345	COG0635	Involved in the biosynthesis of porphyrin-containing compound
J4N44_14445	COG1012	belongs to the aldehyde dehydrogenase family
J4N44_14495	COG3437	response regulator, receiver
J4N44_14510	COG1486	melibiose metabolic process
J4N44_14515	COG1447	Phosphotransferase system cellobiose-specific component IIA
J4N44_14525	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
J4N44_14545	COG1028	Short-chain dehydrogenase reductase Sdr
J4N44_14555	COG0795	lipopolysaccharide-transporting ATPase activity
J4N44_14560	COG0795	lipopolysaccharide-transporting ATPase activity
J4N44_14570	COG2927	DNA polymerase III (CHI subunit)
J4N44_14575	COG0525	valine-tRNA ligase activity
J4N44_14585	COG0456	acetyltransferase
J4N44_14620	COG0251	oxidation-reduction process
J4N44_14625	COG0204	Acyl-transferase
J4N44_14635	COG5007	Belongs to the BolA IbaG family
J4N44_14645	COG2854	intermembrane phospholipid transfer
J4N44_14650	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
J4N44_14655	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
J4N44_14660	COG1127	ABC transporter
J4N44_14670	COG0517	IMP dehydrogenase activity
J4N44_14670	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
J4N44_14680	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
J4N44_14685	COG1137	ATPase activity
J4N44_14695	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
J4N44_14700	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
J4N44_14710	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
J4N44_14715	COG2239	Acts as a magnesium transporter
J4N44_14720	COG0312	modulator of DNA gyrase
J4N44_14730	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
J4N44_14735	COG0564	pseudouridine synthase activity
J4N44_14750	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
J4N44_14755	COG0312	modulator of DNA gyrase
J4N44_14760	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
J4N44_14765	COG3164	Protein of unknown function
J4N44_14775	COG0424	maF-like protein
J4N44_14780	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
J4N44_14785	COG1792	Involved in formation and maintenance of cell shape
J4N44_14790	COG1077	Cell shape determining protein MreB Mrl
J4N44_14825	COG2165	general secretion pathway protein
J4N44_14835	COG1459	type II secretion system
J4N44_14840	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
J4N44_14850	COG3409	Peptidoglycan-binding domain 1 protein
J4N44_14850	COG3267	Type II secretory pathway component ExeA
J4N44_14875	COG2199	diguanylate cyclase activity
J4N44_14875	COG2200	EAL domain
J4N44_14880	COG0629	single-stranded DNA binding
J4N44_14895	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
J4N44_14905	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
J4N44_14910	COG0527	aspartate kinase activity
J4N44_14915	COG0646	methionine synthase
J4N44_14915	COG1410	methionine synthase
J4N44_14980	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
J4N44_15000	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
J4N44_15005	COG0735	belongs to the Fur family
J4N44_15020	COG0432	Pfam Uncharacterised protein family UPF0047
J4N44_15030	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
J4N44_15035	COG0305	Participates in initiation and elongation during chromosome replication
J4N44_15055	COG0360	Binds together with S18 to 16S ribosomal RNA
J4N44_15060	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
J4N44_15065	COG0338	D12 class N6 adenine-specific DNA methyltransferase
J4N44_15110	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
J4N44_15120	COG0678	peroxiredoxin activity
J4N44_15120	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
J4N44_15125	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
J4N44_15135	COG0165	Argininosuccinate lyase
J4N44_15135	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
J4N44_15150	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
J4N44_15160	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
J4N44_15170	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
J4N44_15175	COG0460	homoserine dehydrogenase
J4N44_15175	COG0527	aspartate kinase activity
J4N44_15180	COG0626	cystathionine gamma-synthase activity
J4N44_15190	COG0281	malic enzyme
J4N44_15200	COG2906	2 iron, 2 sulfur cluster binding
J4N44_15215	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
J4N44_15230	COG2168	tRNA wobble position uridine thiolation
J4N44_15235	COG2923	Belongs to the DsrF TusC family
J4N44_15240	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
J4N44_15250	COG0545	Peptidyl-prolyl cis-trans isomerase
J4N44_15265	COG1446	asparaginase
J4N44_15270	COG1047	Peptidyl-prolyl cis-trans
J4N44_15285	COG2249	NAD(P)H dehydrogenase (quinone) activity
J4N44_15290	COG0488	(ABC) transporter
J4N44_15300	COG0429	hydrolase of the alpha beta-hydrolase fold
J4N44_15310	COG3954	Phosphoribulokinase
J4N44_15315	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
J4N44_15335	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
J4N44_15365	COG0546	phosphoglycolate phosphatase activity
J4N44_15370	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
J4N44_15375	COG0557	exoribonuclease II activity
J4N44_15385	COG1017	nitric oxide dioxygenase activity
J4N44_15385	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
J4N44_15390	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
J4N44_15395	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
J4N44_15400	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
J4N44_15405	COG0330	HflC and HflK could
J4N44_15410	COG0330	HflC and HflK could
J4N44_15415	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
J4N44_15430	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
J4N44_15435	COG0860	N-Acetylmuramoyl-L-alanine amidase
J4N44_15440	COG0802	atpase or kinase
J4N44_15445	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
J4N44_15515	COG1162	GTPase activity
J4N44_15525	COG0471	metal ion transport
J4N44_15530	COG0840	transmembrane signaling receptor activity
J4N44_15540	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
J4N44_15545	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
J4N44_15550	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
J4N44_15560	COG1045	serine acetyltransferase
J4N44_15565	COG4942	peptidase
J4N44_15590	COG1053	succinate dehydrogenase
J4N44_15595	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
J4N44_15625	COG1509	lysine 2,3-aminomutase activity
J4N44_15650	COG0534	Mate efflux family protein
J4N44_15660	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
J4N44_15665	COG3678	ATP-independent chaperone mediated protein folding
J4N44_15670	COG0745	RESPONSE REGULATOR receiver
J4N44_15675	COG2205	protein histidine kinase activity
J4N44_15680	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
J4N44_15685	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
J4N44_15690	COG3030	protein affecting phage T7 exclusion by the F plasmid
J4N44_15695	COG1027	Aspartate ammonia-lyase
J4N44_15700	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
J4N44_15705	COG4232	protein-disulfide reductase activity
J4N44_15715	COG2095	MarC family integral membrane protein
J4N44_15725	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
J4N44_15745	COG0784	Response regulator, receiver
J4N44_15745	COG2198	Histidine kinase
J4N44_15745	COG2205	protein histidine kinase activity
J4N44_15750	COG2814	Major facilitator Superfamily
J4N44_15765	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
J4N44_15770	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
J4N44_15775	COG0511	ligase activity, forming carbon-carbon bonds
J4N44_15780	COG0439	Biotin carboxylase
J4N44_15790	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
J4N44_15795	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
J4N44_15800	COG2199	diguanylate cyclase activity
J4N44_15850	COG1982	Orn Lys Arg decarboxylase major
J4N44_15855	COG0531	amino acid
J4N44_15860	COG3710	Transcriptional regulator
J4N44_15865	COG0789	Transcriptional regulator
J4N44_15875	COG0151	Belongs to the GarS family
J4N44_15890	COG1253	flavin adenine dinucleotide binding
J4N44_15895	COG3068	Protein conserved in bacteria
J4N44_15905	COG1573	uracil-dna glycosylase
J4N44_15925	COG2816	NAD+ diphosphatase activity
J4N44_15930	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
J4N44_15950	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
J4N44_15965	COG0250	Participates in transcription elongation, termination and antitermination
J4N44_15970	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
J4N44_16010	COG0812	UDP-N-acetylmuramate dehydrogenase activity
J4N44_16020	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
J4N44_16120	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
J4N44_16125	COG0534	Mate efflux family protein
J4N44_16140	COG2937	Belongs to the GPAT DAPAT family
J4N44_16150	COG3161	chorismate lyase activity
J4N44_16155	COG1580	Controls the rotational direction of flagella during chemotaxis
J4N44_16160	COG0705	Rhomboid family
J4N44_16175	COG2177	Part of the ABC transporter FtsEX involved in
J4N44_16180	COG2884	Cell division ATP-binding protein ftsE
J4N44_16185	COG0552	protein localization to endoplasmic reticulum
J4N44_16185	COG0552	protein localization to endoplasmic reticulum
J4N44_16190	COG0742	ribosomal rna small subunit methyltransferase
J4N44_16200	COG2095	MarC family integral membrane protein
J4N44_16245	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
J4N44_16250	COG0640	Transcriptional regulator
J4N44_16255	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
J4N44_16260	COG1280	lysine exporter protein (LysE YggA)
J4N44_16265	COG2267	carboxylic ester hydrolase activity
J4N44_16270	COG0561	phosphatase activity
J4N44_16285	COG3148	PFAM DTW domain containing protein
J4N44_16290	COG2200	EAL domain
J4N44_16290	COG3287	FIST C domain
J4N44_16290	COG2199	diguanylate cyclase activity
J4N44_16295	COG1011	Hydrolase
J4N44_16315	COG0019	diaminopimelate decarboxylase activity
J4N44_16330	COG3072	Adenylate cyclase
J4N44_16340	COG1587	Uroporphyrinogen-III synthase
J4N44_16345	COG2959	enzyme of heme biosynthesis
J4N44_16350	COG3071	HemY protein
J4N44_16390	COG0633	Ferredoxin
J4N44_16395	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
J4N44_16410	COG3118	belongs to the thioredoxin family
J4N44_16425	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
J4N44_16435	COG0514	ATP-dependent DNA helicase (RecQ)
J4N44_16440	COG2962	Rard protein
J4N44_16450	COG1280	lysine exporter protein (LysE YggA)
J4N44_16455	COG0405	Gamma-glutamyltransferase
J4N44_16460	COG0210	DNA helicase
J4N44_16470	COG3220	belongs to the UPF0276 family
J4N44_16490	COG2814	Major facilitator Superfamily
J4N44_16500	COG0006	proline dipeptidase activity
J4N44_16500	COG0006	proline dipeptidase activity
J4N44_16515	COG2104	thiamine diphosphate biosynthetic process
J4N44_16520	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
J4N44_16540	COG2132	Multicopper oxidase
J4N44_16580	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
J4N44_16590	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
J4N44_16605	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
J4N44_16610	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
J4N44_16615	COG0551	DNA topoisomerase type I activity
J4N44_16625	COG0758	DNA mediated transformation
J4N44_16645	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
J4N44_16645	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
J4N44_16650	COG0569	domain protein
J4N44_16655	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
J4N44_16665	COG1272	protein, Hemolysin III
J4N44_16670	COG4326	sporulation control protein
J4N44_16680	COG3084	Protein conserved in bacteria
J4N44_16690	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
J4N44_16695	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
J4N44_16700	COG0204	Acyl-transferase
J4N44_16710	COG3706	GGDEF domain
J4N44_16715	COG0606	chelatase, subunit chli
J4N44_16740	COG0758	DNA mediated transformation
J4N44_16765	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
J4N44_16770	COG0606	chelatase, subunit chli
J4N44_16780	COG3978	acetolactate synthase activity
J4N44_16785	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
J4N44_16790	COG0129	dihydroxy-acid dehydratase activity
J4N44_16800	COG0583	DNA-binding transcription factor activity
J4N44_16805	COG2814	Major facilitator Superfamily
J4N44_16815	COG0765	amino acid transport
J4N44_16825	COG0355	proton-transporting ATP synthase activity, rotational mechanism
J4N44_16835	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
J4N44_16860	COG0356	it plays a direct role in the translocation of protons across the membrane
J4N44_16865	COG3312	ion transport
J4N44_16870	COG1475	DNA binding
J4N44_16875	COG1192	Involved in chromosome partitioning
J4N44_16885	COG0445	tRNA wobble uridine modification
J4N44_16890	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
J4N44_16920	COG1126	abc transporter atp-binding protein
J4N44_16945	COG1444	tRNA N-acetyltransferase activity
J4N44_16950	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
J4N44_16955	COG0848	biopolymer transport protein
J4N44_16995	COG1595	DNA-templated transcription, initiation
J4N44_17025	COG4166	transmembrane transport
J4N44_17095	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
J4N44_17150	COG1132	(ABC) transporter
J4N44_17175	COG0800	Aldolase
J4N44_17180	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
J4N44_17185	COG1904	glucuronate isomerase
J4N44_17190	COG0246	Mannitol dehydrogenase
J4N44_17200	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
J4N44_17210	COG2186	Transcriptional regulator
J4N44_17215	COG1312	Catalyzes the dehydration of D-mannonate
J4N44_17220	COG3655	Transcriptional regulator
J4N44_17235	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
J4N44_17240	COG1595	DNA-templated transcription, initiation
J4N44_17250	COG0513	Belongs to the DEAD box helicase family
J4N44_17255	COG3713	MltA-interacting MipA family protein
J4N44_17265	COG2153	protein acetylation
J4N44_17270	COG2258	MOSC domain
J4N44_17285	COG1522	sequence-specific DNA binding
J4N44_17305	COG0346	lactoylglutathione lyase activity
J4N44_17350	COG0366	Alpha amylase catalytic
J4N44_17355	COG0583	DNA-binding transcription factor activity
J4N44_17385	COG3734	2-keto-3-deoxy-galactonokinase
J4N44_17390	COG0800	Aldolase
J4N44_17395	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
J4N44_17400	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
J4N44_17400	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
J4N44_17405	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
J4N44_17405	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
J4N44_17410	COG4948	Mandelate Racemase Muconate Lactonizing
J4N44_17415	COG0129	dihydroxy-acid dehydratase activity
J4N44_17425	COG3634	alkyl hydroperoxide reductase activity
J4N44_17440	COG1846	Transcriptional regulator
J4N44_17445	COG1764	response to oxidative stress
J4N44_17460	COG0840	transmembrane signaling receptor activity
J4N44_17465	COG0612	Peptidase, M16
J4N44_17490	COG0739	heme binding
J4N44_17515	COG4604	ABC transporter, ATP-binding protein
J4N44_17520	COG4605	iron ion homeostasis
J4N44_17525	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J4N44_17530	COG4607	ABC-type enterochelin transport system periplasmic component
J4N44_17535	COG0583	DNA-binding transcription factor activity
J4N44_17540	COG4771	TonB-dependent receptor
J4N44_17560	COG2814	Major facilitator Superfamily
J4N44_17570	COG1609	Transcriptional regulator
J4N44_17595	COG1760	l-serine dehydratase
J4N44_17605	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
J4N44_17635	COG2199	diguanylate cyclase activity
J4N44_17635	COG2203	Gaf domain
J4N44_17660	COG0366	Alpha amylase catalytic
J4N44_17665	COG2356	endonuclease I
J4N44_17670	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
J4N44_17715	COG0456	acetyltransferase
J4N44_17735	COG1028	Short-chain dehydrogenase reductase Sdr
J4N44_17745	COG3005	denitrification pathway
J4N44_17750	COG0243	molybdopterin cofactor binding
J4N44_17755	COG0671	phosphoesterase, PA-phosphatase related
J4N44_17770	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
J4N44_17775	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
J4N44_17780	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
J4N44_17785	COG1116	anion transmembrane transporter activity
J4N44_17790	COG0351	phosphomethylpyrimidine kinase
J4N44_17795	COG0312	modulator of DNA gyrase
J4N44_17800	COG0312	modulator of DNA gyrase
J4N44_17860	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
J4N44_17870	COG0584	glycerophosphoryl diester phosphodiesterase
J4N44_17875	COG0039	L-malate dehydrogenase activity
J4N44_17880	COG0745	RESPONSE REGULATOR receiver
J4N44_17900	COG0811	peptide transport
J4N44_17905	COG0811	peptide transport
J4N44_17910	COG0848	biopolymer transport protein
J4N44_17955	COG0803	Belongs to the bacterial solute-binding protein 9 family
J4N44_17960	COG1121	(ABC) transporter
J4N44_17965	COG1108	ABC-type Mn2 Zn2 transport systems permease components
J4N44_17980	COG1770	oligopeptidase
J4N44_17985	COG2814	Major facilitator Superfamily
J4N44_17990	COG0010	Belongs to the arginase family
J4N44_17995	COG1166	arginine decarboxylase activity
J4N44_18005	COG4067	protein conserved in archaea
J4N44_18005	COG0189	ligase activity
J4N44_18010	COG0189	ligase activity
J4N44_18030	COG0583	DNA-binding transcription factor activity
J4N44_18070	COG1114	Component of the transport system for branched-chain amino acids
J4N44_18085	COG0579	oxidoreductase
J4N44_18095	COG3179	chitinase
J4N44_18115	COG3033	Beta-eliminating lyase
J4N44_18130	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
J4N44_18135	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
J4N44_18155	COG3706	GGDEF domain
J4N44_18170	COG3706	GGDEF domain
J4N44_18175	COG0415	Belongs to the DNA photolyase family
J4N44_18180	COG3046	protein related to deoxyribodipyrimidine photolyase
J4N44_18195	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
J4N44_18195	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
J4N44_18200	COG1765	OsmC-like protein
J4N44_18250	COG1011	Hydrolase
J4N44_18285	COG3240	lipase activity
J4N44_18315	COG1609	Transcriptional regulator
J4N44_18325	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
J4N44_18330	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
J4N44_18335	COG1840	ABC-type Fe3 transport system, periplasmic component
J4N44_18340	COG3842	ATPase activity
J4N44_18365	COG2990	Protein conserved in bacteria
J4N44_18375	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
J4N44_18380	COG2866	Carboxypeptidase
J4N44_18390	COG0583	DNA-binding transcription factor activity
J4N44_18415	COG3104	oligopeptide transport
J4N44_18420	COG1760	l-serine dehydratase
J4N44_18445	COG0741	lytic transglycosylase activity
J4N44_18445	COG1388	LysM domain
J4N44_18465	COG1815	bacterial-type flagellum-dependent cell motility
J4N44_18470	COG1558	bacterial-type flagellum-dependent cell motility
J4N44_18480	COG1749	Flagellar hook protein flgE
J4N44_18485	COG4787	bacterial-type flagellum-dependent cell motility
J4N44_18490	COG4786	Flagellar basal body rod
J4N44_18495	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
J4N44_18500	COG1706	bacterial-type flagellum-dependent cell motility
J4N44_18510	COG1256	bacterial-type flagellum assembly
J4N44_18510	COG4786	Flagellar basal body rod
J4N44_18550	COG2226	methyltransferase
J4N44_18570	COG0672	)-iron permease
J4N44_18585	COG1136	(ABC) transporter
J4N44_18585	COG0577	efflux transmembrane transporter activity
J4N44_18595	COG1136	(ABC) transporter
J4N44_18610	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
J4N44_18660	COG1360	Flagellar Motor Protein
J4N44_18665	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
J4N44_18670	COG1191	sigma factor activity
J4N44_18675	COG1580	Controls the rotational direction of flagella during chemotaxis
J4N44_18690	COG1516	flagellar protein fliS
J4N44_18695	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
J4N44_18705	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
J4N44_18720	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
J4N44_18730	COG1987	bacterial-type flagellum assembly
J4N44_18790	COG2200	EAL domain
J4N44_18875	COG0346	lactoylglutathione lyase activity
J4N44_18900	COG0745	RESPONSE REGULATOR receiver
J4N44_18925	COG0156	8-amino-7-oxononanoate synthase activity
J4N44_18930	COG1063	alcohol dehydrogenase
J4N44_18950	COG3338	carbonate dehydratase activity
J4N44_18985	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
J4N44_18995	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
J4N44_19030	COG3053	Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase
J4N44_19040	COG0318	PFAM AMP-dependent synthetase and ligase
J4N44_19045	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
J4N44_19075	COG0786	glutamate:sodium symporter activity
J4N44_19080	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
J4N44_19090	COG1538	Outer membrane efflux protein
J4N44_19100	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J4N44_19105	COG0583	DNA-binding transcription factor activity
J4N44_19120	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
J4N44_19125	COG2197	response regulator
J4N44_19135	COG0574	Belongs to the PEP-utilizing enzyme family
J4N44_19135	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
J4N44_19145	COG0252	asparaginase activity
J4N44_19155	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
J4N44_19160	COG0583	DNA-binding transcription factor activity
J4N44_19180	COG3122	Protein conserved in bacteria
J4N44_19195	COG1902	pentaerythritol trinitrate reductase activity
J4N44_19205	COG2814	Major facilitator Superfamily
J4N44_19210	COG1028	Short-chain dehydrogenase reductase Sdr
J4N44_19235	COG0583	DNA-binding transcription factor activity
J4N44_19245	COG0513	Belongs to the DEAD box helicase family
J4N44_19265	COG0095	Lipoate-protein ligase
J4N44_19285	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
J4N44_19290	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
J4N44_19290	COG2207	Transcriptional regulator
J4N44_19295	COG0583	DNA-binding transcription factor activity
J4N44_19305	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
J4N44_19340	COG1566	PFAM secretion protein HlyD family protein
J4N44_19345	COG0583	DNA-binding transcription factor activity
J4N44_19360	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J4N44_19360	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J4N44_19360	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
J4N44_19365	COG2207	Transcriptional regulator
J4N44_19375	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J4N44_19380	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J4N44_19385	COG0583	DNA-binding transcription factor activity
J4N44_19395	COG2084	Dehydrogenase
J4N44_19400	COG0753	catalase activity
J4N44_19410	COG2130	NADP-dependent
J4N44_19415	COG1309	transcriptional regulator
J4N44_19450	COG0438	transferase activity, transferring glycosyl groups
J4N44_19460	COG0489	protein tyrosine kinase activity
J4N44_19460	COG3206	protein involved in exopolysaccharide biosynthesis
J4N44_19480	COG3842	ATPase activity
J4N44_19490	COG1175	transmembrane transport
J4N44_19495	COG3833	ABC-type maltose transport systems, permease component
J4N44_19540	COG0741	lytic transglycosylase activity
J4N44_19555	COG4753	response regulator
J4N44_19555	COG2207	Transcriptional regulator
J4N44_19565	COG2354	Protein conserved in bacteria
J4N44_19575	COG0401	homolog of Blt101
J4N44_19580	COG3217	Mosc domain protein beta barrel domain protein
J4N44_19580	COG0633	Ferredoxin
J4N44_19580	COG3217	Mosc domain protein beta barrel domain protein
J4N44_19580	COG0633	Ferredoxin
J4N44_19590	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
J4N44_19630	COG0583	DNA-binding transcription factor activity
J4N44_19660	COG1335	isochorismatase
J4N44_19665	COG4977	sequence-specific DNA binding
J4N44_19680	COG2194	sulfuric ester hydrolase activity
J4N44_19685	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
J4N44_19695	COG2205	protein histidine kinase activity
J4N44_19700	COG0745	RESPONSE REGULATOR receiver
J4N44_19705	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
J4N44_19710	COG4948	Mandelate Racemase Muconate Lactonizing
J4N44_19715	COG1053	succinate dehydrogenase
J4N44_19715	COG3976	FMN-binding domain protein
J4N44_19730	COG4221	oxidoreductase activity
J4N44_19745	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
J4N44_19765	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
J4N44_19775	COG2814	Major facilitator Superfamily
J4N44_19790	COG1418	mRNA catabolic process
J4N44_19805	COG0402	S-adenosylhomocysteine deaminase activity
J4N44_19810	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
J4N44_19815	COG2239	Acts as a magnesium transporter
J4N44_19820	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
J4N44_19825	COG1566	PFAM secretion protein HlyD family protein
J4N44_19850	COG0745	RESPONSE REGULATOR receiver
J4N44_19855	COG2205	protein histidine kinase activity
J4N44_19865	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
J4N44_19870	COG0531	amino acid
J4N44_19875	COG1522	sequence-specific DNA binding
J4N44_19885	COG0583	DNA-binding transcription factor activity
J4N44_19905	COG0784	Response regulator, receiver
J4N44_19905	COG2205	protein histidine kinase activity
J4N44_19905	COG5002	protein histidine kinase activity
J4N44_19910	COG0673	inositol 2-dehydrogenase activity
J4N44_19915	COG0534	Mate efflux family protein
J4N44_19920	COG2926	Belongs to the UPF0265 family
J4N44_19985	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
J4N44_19990	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
J4N44_20000	COG1280	lysine exporter protein (LysE YggA)
J4N44_20010	COG0183	Belongs to the thiolase family
J4N44_20030	COG3005	denitrification pathway
J4N44_20050	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
J4N44_20055	COG3850	Histidine kinase
J4N44_20060	COG2197	response regulator
J4N44_20075	COG2195	Cleaves the N-terminal amino acid of tripeptides
J4N44_20095	COG0840	transmembrane signaling receptor activity
J4N44_20105	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
J4N44_20135	COG0545	Peptidyl-prolyl cis-trans isomerase
J4N44_20145	COG2885	chlorophyll binding
J4N44_20165	COG1278	Cold shock
J4N44_20170	COG3036	rescue of stalled ribosome
J4N44_20180	COG2199	diguanylate cyclase activity
J4N44_20200	COG0577	efflux transmembrane transporter activity
J4N44_20200	COG1136	(ABC) transporter
J4N44_20230	COG1538	Outer membrane efflux protein
J4N44_20235	COG0784	Response regulator, receiver
J4N44_20235	COG2205	protein histidine kinase activity
J4N44_20260	COG0840	transmembrane signaling receptor activity
J4N44_20265	COG0783	Belongs to the Dps family
J4N44_20275	COG1619	proteins homologs of microcin C7 resistance protein MccF
J4N44_20280	COG2133	pyrroloquinoline quinone binding
J4N44_20285	COG1454	alcohol dehydrogenase
J4N44_20290	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
J4N44_20315	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
J4N44_20320	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
J4N44_20325	COG3186	Phenylalanine-4-hydroxylase
J4N44_20355	COG3530	Putative quorum-sensing-regulated virulence factor
J4N44_20390	COG1289	transmembrane transporter activity
J4N44_20395	COG0210	DNA helicase
J4N44_20405	COG1879	ABC-type sugar transport system periplasmic component
J4N44_20410	COG2205	protein histidine kinase activity
J4N44_20410	COG2198	Histidine kinase
J4N44_20410	COG0784	Response regulator, receiver
J4N44_20440	COG3119	arylsulfatase activity
J4N44_20445	COG3119	arylsulfatase activity
J4N44_20455	COG0583	DNA-binding transcription factor activity
J4N44_20460	COG3119	arylsulfatase activity
J4N44_20465	COG0641	radical SAM
J4N44_20470	COG0714	Associated with various cellular activities
J4N44_20530	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
J4N44_20540	COG0355	proton-transporting ATP synthase activity, rotational mechanism
J4N44_20550	COG0583	DNA-binding transcription factor activity
J4N44_20555	COG1597	lipid kinase activity
J4N44_20560	COG3111	PFAM Bacterial OB fold (BOF) protein
J4N44_20580	COG0641	radical SAM
J4N44_20605	COG0501	Belongs to the peptidase M48B family
J4N44_20610	COG1704	LemA family
J4N44_20615	COG3069	C4-dicarboxylate transmembrane transporter activity
J4N44_20645	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
J4N44_20650	COG0739	heme binding
J4N44_20670	COG2885	chlorophyll binding
J4N44_20690	COG3501	Rhs element vgr protein
J4N44_20715	COG0515	serine threonine protein kinase
J4N44_20750	COG1522	sequence-specific DNA binding
J4N44_20820	COG0457	Tetratricopeptide repeat
J4N44_20825	COG0477	Major facilitator Superfamily
J4N44_20825	COG2814	Major facilitator Superfamily
J4N44_20830	COG1940	carbohydrate kinase activity
J4N44_20835	COG2017	converts alpha-aldose to the beta-anomer
J4N44_20840	COG0019	diaminopimelate decarboxylase activity
J4N44_20845	COG4264	IucA IucC family
J4N44_20870	COG4772	TonB-dependent receptor
J4N44_20875	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
J4N44_20880	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J4N44_20885	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J4N44_20890	COG1120	ATPase activity
J4N44_20895	COG4771	TonB-dependent receptor
J4N44_20905	COG5001	Diguanylate cyclase
J4N44_20910	COG0745	RESPONSE REGULATOR receiver
J4N44_20915	COG5002	protein histidine kinase activity
J4N44_20920	COG4174	ABC transporter (Permease)
J4N44_20925	COG4239	(ABC) transporter, permease
J4N44_20930	COG4166	transmembrane transport
J4N44_20935	COG0444	Belongs to the ABC transporter superfamily
J4N44_20940	COG4608	Belongs to the ABC transporter superfamily
J4N44_20955	COG0784	Response regulator, receiver
J4N44_20955	COG2205	protein histidine kinase activity
J4N44_20960	COG5001	Diguanylate cyclase
J4N44_20960	COG3300	MHYT domain
J4N44_20965	COG2197	response regulator
J4N44_20970	COG3706	GGDEF domain
J4N44_20980	COG2197	response regulator
J4N44_20990	COG0778	Nitroreductase
J4N44_20995	COG0835	chemotaxis
J4N44_20995	COG0784	Response regulator, receiver
J4N44_21000	COG2165	general secretion pathway protein
J4N44_21010	COG2962	Rard protein
J4N44_21035	COG3278	Belongs to the heme-copper respiratory oxidase family
J4N44_21065	COG1024	Enoyl-CoA hydratase
J4N44_21070	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
J4N44_21075	COG1960	acyl-CoA dehydrogenase activity
J4N44_21085	COG0183	Belongs to the thiolase family
J4N44_21100	COG1024	Enoyl-CoA hydratase
J4N44_21105	COG1024	Enoyl-CoA hydratase
J4N44_21115	COG1028	Short-chain dehydrogenase reductase Sdr
J4N44_21120	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
J4N44_21125	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
J4N44_21130	COG1845	cytochrome c oxidase, subunit III
J4N44_21135	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
J4N44_21155	COG1902	pentaerythritol trinitrate reductase activity
J4N44_21155	COG0446	pyridine nucleotide-disulphide oxidoreductase
J4N44_21160	COG0671	phosphoesterase, PA-phosphatase related
J4N44_21200	COG1132	(ABC) transporter
J4N44_21215	COG1733	regulation of RNA biosynthetic process
J4N44_21225	COG2176	DNA-directed DNA polymerase activity
J4N44_21240	COG0583	DNA-binding transcription factor activity
J4N44_21245	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
J4N44_21275	COG1201	RNA secondary structure unwinding
J4N44_21285	COG0509	glycine decarboxylation via glycine cleavage system
J4N44_21290	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
J4N44_21300	COG0404	The glycine cleavage system catalyzes the degradation of glycine
J4N44_21310	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J4N44_21315	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J4N44_21345	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J4N44_21345	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
J4N44_21345	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J4N44_21350	COG1105	Belongs to the carbohydrate kinase PfkB family
J4N44_21355	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
J4N44_21355	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
J4N44_21360	COG1609	Transcriptional regulator
J4N44_21375	COG2199	diguanylate cyclase activity
J4N44_21375	COG2203	Gaf domain
J4N44_21375	COG2200	EAL domain
J4N44_21380	COG0765	amino acid transport
J4N44_21385	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J4N44_21390	COG0765	amino acid transport
J4N44_21395	COG1126	abc transporter atp-binding protein
J4N44_21405	COG1979	alcohol dehydrogenase
J4N44_21410	COG2207	Transcriptional regulator
J4N44_21420	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
J4N44_21430	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
J4N44_21445	COG0784	Response regulator, receiver
J4N44_21445	COG3437	response regulator, receiver
J4N44_21450	COG0546	phosphoglycolate phosphatase activity
J4N44_21465	COG0513	Belongs to the DEAD box helicase family
J4N44_21470	COG4943	cyclic-guanylate-specific phosphodiesterase activity
J4N44_21485	COG3038	cytochrome b561
J4N44_21495	COG2116	formate transmembrane transporter activity
J4N44_21500	COG0583	DNA-binding transcription factor activity
J4N44_21510	COG3593	DNA synthesis involved in DNA repair
J4N44_21515	COG0737	Belongs to the 5'-nucleotidase family
J4N44_21535	COG0646	methionine synthase
J4N44_21535	COG1410	methionine synthase
J4N44_21550	COG2267	carboxylic ester hydrolase activity
J4N44_21555	COG2067	long-chain fatty acid transport protein
J4N44_21570	COG2050	protein possibly involved in aromatic compounds catabolism
J4N44_21605	COG0484	heat shock protein binding
J4N44_21615	COG5001	Diguanylate cyclase
J4N44_21615	COG3300	MHYT domain
J4N44_21620	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
J4N44_21630	COG4181	ATPase activity
J4N44_21635	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
J4N44_21645	COG1984	allophanate hydrolase subunit 2
J4N44_21660	COG3447	MASE1 domain protein
J4N44_21660	COG5001	Diguanylate cyclase
J4N44_21660	COG5002	protein histidine kinase activity
J4N44_21665	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
J4N44_21675	COG0583	DNA-binding transcription factor activity
J4N44_21685	COG0045	succinate-CoA ligase (ADP-forming) activity
J4N44_21685	COG1042	CoA-binding domain protein
J4N44_21685	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
J4N44_21705	COG0023	Translation Initiation Factor
J4N44_21730	COG3140	Belongs to the UPF0181 family
J4N44_21755	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
J4N44_21760	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
J4N44_21790	COG2203	Gaf domain
J4N44_21790	COG3706	GGDEF domain
J4N44_21790	COG4251	negative regulation of phosphorylation
J4N44_21790	COG5001	Diguanylate cyclase
J4N44_21800	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
J4N44_21805	COG4149	molybdate abc transporter
J4N44_21810	COG0725	ABC transporter, periplasmic molybdate-binding protein
J4N44_21820	COG3111	PFAM Bacterial OB fold (BOF) protein
J4N44_21830	COG0189	ligase activity
J4N44_21830	COG4067	protein conserved in archaea
J4N44_21845	COG0534	Mate efflux family protein
J4N44_21850	COG0602	queuosine metabolic process
J4N44_21855	COG1328	CTP reductase activity
J4N44_21915	COG2197	response regulator
J4N44_21920	COG3851	Histidine kinase
J4N44_21925	COG2271	Major facilitator Superfamily
J4N44_21930	COG1482	cell wall glycoprotein biosynthetic process
J4N44_21940	COG0628	permease
J4N44_21950	COG1566	PFAM secretion protein HlyD family protein
J4N44_21975	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
J4N44_21980	COG3118	belongs to the thioredoxin family
J4N44_21990	COG0745	RESPONSE REGULATOR receiver
J4N44_21990	COG3292	Two component regulator propeller
J4N44_21990	COG2205	protein histidine kinase activity
J4N44_22025	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
J4N44_22045	COG2116	formate transmembrane transporter activity
J4N44_22055	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
J4N44_22060	COG5001	Diguanylate cyclase
J4N44_22090	COG0840	transmembrane signaling receptor activity
J4N44_22140	COG0277	FAD linked oxidase domain protein
J4N44_22145	COG0583	DNA-binding transcription factor activity
J4N44_22155	COG2425	protein containing a von Willebrand factor type A (vWA) domain
J4N44_22170	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
J4N44_22180	COG1288	antiporter activity
J4N44_22190	COG2814	Major facilitator Superfamily
J4N44_22200	COG3040	lipid binding
J4N44_22230	COG3469	chitinase activity
J4N44_22240	COG0419	ATPase involved in DNA repair
J4N44_22245	COG0420	3'-5' exonuclease activity
J4N44_22270	COG3209	COG3209 Rhs family protein
J4N44_22340	COG0631	protein serine/threonine phosphatase activity
J4N44_22375	COG0515	serine threonine protein kinase
J4N44_22375	COG2815	serine threonine protein kinase
J4N44_22400	COG0346	lactoylglutathione lyase activity
J4N44_22405	COG1902	pentaerythritol trinitrate reductase activity
J4N44_22415	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
J4N44_22415	COG2755	lipolytic protein G-D-S-L family
J4N44_22425	COG5642	Protein of unknown function (DUF2384)
J4N44_22440	COG1234	tRNA 3'-trailer cleavage
J4N44_22445	COG2067	long-chain fatty acid transport protein
J4N44_22525	COG1024	Enoyl-CoA hydratase
J4N44_22530	COG0628	permease
J4N44_22555	COG3038	cytochrome b561
J4N44_22565	COG0739	heme binding
J4N44_22615	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
J4N44_22615	COG2146	nitrite reductase [NAD(P)H] activity
J4N44_22620	COG1116	anion transmembrane transporter activity
J4N44_22625	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
J4N44_22630	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
J4N44_22630	COG1116	anion transmembrane transporter activity
J4N44_22635	COG3707	response regulator
J4N44_22655	COG0243	molybdopterin cofactor binding
J4N44_22665	COG5001	Diguanylate cyclase
J4N44_22665	COG5002	protein histidine kinase activity
J4N44_22670	COG0814	amino acid
J4N44_22675	COG3706	GGDEF domain
J4N44_22695	COG1785	Belongs to the alkaline phosphatase family
J4N44_22710	COG0745	RESPONSE REGULATOR receiver
J4N44_22740	COG2847	Copper chaperone PCu(A)C
J4N44_22745	COG0443	Heat shock 70 kDa protein
J4N44_22815	COG0431	NADPH-dependent FMN reductase
J4N44_22815	COG1053	succinate dehydrogenase
J4N44_22815	COG3976	FMN-binding domain protein
J4N44_22820	COG5002	protein histidine kinase activity
J4N44_22840	COG0625	glutathione transferase activity
J4N44_22855	COG4160	amino acid transport
J4N44_22860	COG4215	(ABC) transporter
J4N44_22865	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J4N44_22870	COG1126	abc transporter atp-binding protein
J4N44_22905	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
J4N44_22915	COG1012	belongs to the aldehyde dehydrogenase family
J4N44_22925	COG0583	DNA-binding transcription factor activity
J4N44_22930	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
J4N44_22940	COG0513	Belongs to the DEAD box helicase family
J4N44_22945	COG4776	Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction
J4N44_22960	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
J4N44_22975	COG2205	protein histidine kinase activity
J4N44_22980	COG0745	RESPONSE REGULATOR receiver
J4N44_22985	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
J4N44_22990	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
J4N44_23000	COG1119	ATPase activity
J4N44_23005	COG2200	EAL domain
J4N44_23025	COG0513	Belongs to the DEAD box helicase family
J4N44_23030	COG5002	protein histidine kinase activity
J4N44_23030	COG5001	Diguanylate cyclase
J4N44_23030	COG3447	MASE1 domain protein
J4N44_23035	COG0523	cobalamin synthesis protein
J4N44_23060	COG4206	TonB-dependent receptor
J4N44_23070	COG0789	Transcriptional regulator
J4N44_23075	COG4604	ABC transporter, ATP-binding protein
J4N44_23080	COG4605	iron ion homeostasis
J4N44_23085	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J4N44_23090	COG4607	ABC-type enterochelin transport system periplasmic component
J4N44_23105	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
J4N44_23120	COG1609	Transcriptional regulator
J4N44_23125	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
J4N44_23130	COG1879	ABC-type sugar transport system periplasmic component
J4N44_23135	COG1172	Belongs to the binding-protein-dependent transport system permease family
J4N44_23140	COG1129	ABC transporter
J4N44_23150	COG5001	Diguanylate cyclase
J4N44_23155	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
J4N44_23165	COG1794	racemase activity, acting on amino acids and derivatives
J4N44_23230	COG2205	protein histidine kinase activity
J4N44_23230	COG0784	Response regulator, receiver
J4N44_23240	COG2205	protein histidine kinase activity
J4N44_23240	COG0784	Response regulator, receiver
J4N44_23260	COG0330	HflC and HflK could
J4N44_23295	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
J4N44_23305	COG2985	domain, Protein
J4N44_23330	COG2272	Belongs to the type-B carboxylesterase lipase family
J4N44_23335	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
J4N44_23340	COG0729	surface antigen
J4N44_23355	COG4175	Glycine betaine
J4N44_23355	COG0517	IMP dehydrogenase activity
J4N44_23395	COG3706	GGDEF domain
J4N44_23410	COG0402	S-adenosylhomocysteine deaminase activity
J4N44_23420	COG0204	Acyl-transferase
J4N44_23450	COG2885	chlorophyll binding
J4N44_23490	COG0455	bacterial-type flagellum organization
J4N44_23500	COG4964	Belongs to the GSP D family
J4N44_23520	COG0583	DNA-binding transcription factor activity
J4N44_23525	COG1073	alpha beta
J4N44_23535	COG2425	protein containing a von Willebrand factor type A (vWA) domain
J4N44_23540	COG0714	Associated with various cellular activities
J4N44_23550	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
J4N44_23550	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
J4N44_23565	COG4989	oxidoreductase activity
J4N44_23590	COG1914	H( )-stimulated, divalent metal cation uptake system
J4N44_23605	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
J4N44_23620	COG2897	thiosulfate sulfurtransferase activity
J4N44_23645	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
J4N44_23650	COG0840	transmembrane signaling receptor activity
J4N44_23655	COG2814	Major facilitator Superfamily
J4N44_23660	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
J4N44_23675	COG1612	heme a metabolic process
J4N44_23695	COG1845	cytochrome c oxidase, subunit III
J4N44_23700	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
J4N44_23710	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
J4N44_23715	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
J4N44_23725	COG1280	lysine exporter protein (LysE YggA)
J4N44_23745	COG0179	Fumarylacetoacetate (FAA) hydrolase
J4N44_23760	COG0697	spore germination
J4N44_23775	COG2814	Major facilitator Superfamily
J4N44_23780	COG0583	DNA-binding transcription factor activity
J4N44_23785	COG5001	Diguanylate cyclase
J4N44_23790	COG0739	heme binding
J4N44_23810	COG3314	Sporulation integral membrane protein YlbJ
J4N44_23825	COG0814	amino acid
J4N44_23845	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
J4N44_23850	COG1072	(Pantothenic acid kinase))
J4N44_23860	COG1063	alcohol dehydrogenase
J4N44_23865	COG2213	PTS system mannitol-specific
J4N44_23870	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
J4N44_23875	COG2188	Transcriptional regulator
J4N44_23880	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J4N44_23880	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J4N44_23880	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
J4N44_23885	COG0383	alpha-mannosidase activity
J4N44_23890	COG1482	cell wall glycoprotein biosynthetic process
J4N44_23895	COG0747	negative chemotaxis
J4N44_23910	COG1733	regulation of RNA biosynthetic process
J4N44_23925	COG0798	PFAM Bile acid sodium symporter
J4N44_23940	COG1881	PFAM PEBP family protein
J4N44_23950	COG2249	NAD(P)H dehydrogenase (quinone) activity
J4N44_23965	COG0583	DNA-binding transcription factor activity
J4N44_24020	COG0366	Alpha amylase catalytic
J4N44_24030	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
J4N44_24035	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
J4N44_24040	COG0784	Response regulator, receiver
J4N44_24040	COG0835	chemotaxis
J4N44_24050	COG0748	coenzyme F420 binding
J4N44_24055	COG3721	Heme iron utilization protein
J4N44_24065	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
J4N44_24070	COG0811	peptide transport
J4N44_24075	COG0848	biopolymer transport protein
J4N44_24085	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J4N44_24090	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
J4N44_24095	COG0840	transmembrane signaling receptor activity
J4N44_24105	COG1131	(ABC) transporter
J4N44_24110	COG0842	Transport permease protein
J4N44_24115	COG0251	oxidation-reduction process
J4N44_24130	COG0800	Aldolase
J4N44_24135	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
J4N44_24140	COG4145	pantothenate transmembrane transporter activity
J4N44_24150	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
J4N44_24175	COG3383	formate dehydrogenase (NAD+) activity
J4N44_24195	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
J4N44_24220	COG0604	alcohol dehydrogenase
J4N44_24220	COG3321	synthase
J4N44_24220	COG1028	Short-chain dehydrogenase reductase Sdr
J4N44_24235	COG0456	acetyltransferase
J4N44_24255	COG0612	Peptidase, M16
J4N44_24260	COG4178	(ABC) transporter
J4N44_24265	COG4771	TonB-dependent receptor
J4N44_24275	COG0811	peptide transport
J4N44_24280	COG0811	peptide transport
J4N44_24285	COG0848	biopolymer transport protein
J4N44_24310	COG1858	cytochrome C peroxidase
J4N44_24320	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
J4N44_24330	COG1505	serine-type exopeptidase activity
J4N44_24335	COG0488	(ABC) transporter
J4N44_24340	COG1720	tRNA m6t6A37 methyltransferase activity
J4N44_24360	COG0589	response to stress
J4N44_24385	COG1175	transmembrane transport
J4N44_24390	COG0395	ABC-type sugar transport system, permease component
J4N44_24395	COG3842	ATPase activity
J4N44_24425	COG0523	cobalamin synthesis protein
J4N44_24435	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
J4N44_24445	COG4667	esterase of the alpha-beta hydrolase superfamily
J4N44_24450	COG1741	Belongs to the pirin family
J4N44_24455	COG1278	Cold shock
J4N44_24465	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
J4N44_24495	COG2226	methyltransferase
J4N44_24505	COG3706	GGDEF domain
J4N44_24510	COG1686	Belongs to the peptidase S11 family
J4N44_24515	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
J4N44_24520	COG2249	NAD(P)H dehydrogenase (quinone) activity
J4N44_24525	COG0583	DNA-binding transcription factor activity
J4N44_24530	COG0625	glutathione transferase activity
J4N44_24540	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
J4N44_24565	COG0681	Belongs to the peptidase S26 family
J4N44_24585	COG1028	Short-chain dehydrogenase reductase Sdr
J4N44_24610	COG3746	phosphate-selective porin O and P
J4N44_24625	COG1028	Short-chain dehydrogenase reductase Sdr
J4N44_24635	COG1301	dicarboxylic acid transport
J4N44_24640	COG1252	NADH dehydrogenase
J4N44_24650	COG3241	Transfers electrons from cytochrome c551 to cytochrome oxidase
J4N44_24655	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
J4N44_24680	COG1028	Short-chain dehydrogenase reductase Sdr
J4N44_24685	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
J4N44_24695	COG0573	inorganic phosphate transmembrane transporter activity
J4N44_24705	COG4191	Histidine kinase
J4N44_24715	COG0110	maltose O-acetyltransferase activity
J4N44_24750	COG0840	transmembrane signaling receptor activity
J4N44_24755	COG0714	Associated with various cellular activities
J4N44_24775	COG2304	oxidoreductase activity
J4N44_24790	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
J4N44_24795	COG0581	inorganic phosphate transmembrane transporter activity
J4N44_24800	COG0573	inorganic phosphate transmembrane transporter activity
J4N44_24810	COG0840	transmembrane signaling receptor activity
J4N44_24820	COG0513	Belongs to the DEAD box helicase family
J4N44_24830	COG1388	LysM domain
J4N44_24830	COG1376	ErfK ybiS ycfS ynhG family protein
J4N44_24835	COG0415	Belongs to the DNA photolyase family
J4N44_24840	COG0789	Transcriptional regulator
J4N44_24845	COG3272	Protein of unknown function (DUF1722)
J4N44_24850	COG0813	purine-nucleoside phosphorylase activity
J4N44_24880	COG1566	PFAM secretion protein HlyD family protein
J4N44_24890	COG1122	ATPase activity
J4N44_24910	COG0348	domain, Protein
J4N44_24915	COG0437	4 iron, 4 sulfur cluster binding
J4N44_24920	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
J4N44_24950	COG1067	ATP-dependent peptidase activity
J4N44_24960	COG4172	Belongs to the ABC transporter superfamily
J4N44_24965	COG1505	serine-type exopeptidase activity
J4N44_24970	COG0583	DNA-binding transcription factor activity
J4N44_24975	COG1620	l-lactate permease
J4N44_24980	COG1304	FMN binding
J4N44_24990	COG0668	transmembrane transport
J4N44_25005	COG4948	Mandelate Racemase Muconate Lactonizing
J4N44_25010	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
J4N44_25030	COG1342	Belongs to the UPF0251 family
J4N44_25040	COG4176	ABC-type proline glycine betaine transport system permease component
J4N44_25045	COG3448	diguanylate cyclase activity
J4N44_25045	COG4175	Glycine betaine
J4N44_25070	COG0583	DNA-binding transcription factor activity
J4N44_25115	COG1335	isochorismatase
J4N44_25130	COG0753	catalase activity
J4N44_25155	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
J4N44_25160	COG1263	PTS System
J4N44_25160	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J4N44_25165	COG1609	Transcriptional regulator
J4N44_25170	COG1349	DNA-binding transcription factor activity
J4N44_25175	COG0346	lactoylglutathione lyase activity
J4N44_25180	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
J4N44_25180	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
J4N44_25190	COG1263	PTS System
J4N44_25190	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J4N44_25195	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
J4N44_25200	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
J4N44_25205	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
J4N44_25215	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
J4N44_25230	COG0561	phosphatase activity
J4N44_25245	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J4N44_25250	COG3537	Alpha-1,2-mannosidase
J4N44_25255	COG3537	Alpha-1,2-mannosidase
J4N44_25265	COG3537	Alpha-1,2-mannosidase
J4N44_25270	COG3537	Alpha-1,2-mannosidase
J4N44_25285	COG1280	lysine exporter protein (LysE YggA)
J4N44_25290	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
J4N44_25305	COG3226	Transcriptional regulator
J4N44_25310	COG0583	DNA-binding transcription factor activity
J4N44_25325	COG0488	(ABC) transporter
J4N44_25330	COG0435	Glutathione S-transferase
J4N44_25335	COG0431	NADPH-dependent FMN reductase
J4N44_25340	COG0583	DNA-binding transcription factor activity
J4N44_25345	COG4628	conserved protein (DUF2132)
J4N44_25350	COG0488	(ABC) transporter
J4N44_25365	COG0346	lactoylglutathione lyase activity
J4N44_25370	COG0384	phenazine biosynthesis protein PhzF
J4N44_25385	COG3220	belongs to the UPF0276 family
J4N44_25400	COG1271	oxidase subunit
J4N44_25405	COG1294	oxidase, subunit
J4N44_25445	COG1917	Cupin 2, conserved barrel domain protein
J4N44_25445	COG2207	Transcriptional regulator
J4N44_25450	COG2207	Transcriptional regulator
J4N44_25460	COG1882	Formate acetyltransferase
J4N44_25465	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
J4N44_25470	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
J4N44_25485	COG2205	protein histidine kinase activity
J4N44_25490	COG0745	RESPONSE REGULATOR receiver
J4N44_25500	COG0454	-acetyltransferase
J4N44_25510	COG2814	Major facilitator Superfamily
J4N44_25525	COG0583	DNA-binding transcription factor activity
J4N44_25530	COG2988	succinylglutamate desuccinylase activity
J4N44_25570	COG0628	permease
J4N44_25575	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
J4N44_25590	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
J4N44_25600	COG4628	conserved protein (DUF2132)
J4N44_25605	COG0583	DNA-binding transcription factor activity
J4N44_25630	COG1686	Belongs to the peptidase S11 family
J4N44_25645	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
J4N44_25665	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
J4N44_25670	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
J4N44_25685	COG0415	Belongs to the DNA photolyase family
J4N44_25690	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
J4N44_25700	COG4667	esterase of the alpha-beta hydrolase superfamily
J4N44_25705	COG2095	MarC family integral membrane protein
J4N44_25715	COG1596	polysaccharide export
J4N44_25740	COG0583	DNA-binding transcription factor activity
J4N44_25770	COG1301	dicarboxylic acid transport
J4N44_25785	COG3339	Conserved Protein
J4N44_25790	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
J4N44_25795	COG0700	Nucleoside recognition
J4N44_25800	COG3366	ferrous iron transmembrane transporter activity
J4N44_25815	COG0366	Alpha amylase catalytic
J4N44_25820	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
J4N44_25825	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
J4N44_25830	COG1640	4-alpha-glucanotransferase
J4N44_25835	COG0058	SHG alpha-glucan phosphorylase activity
J4N44_25855	COG1999	signal sequence binding
J4N44_25865	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J4N44_25865	COG1263	PTS System
J4N44_25870	COG1162	GTPase activity
J4N44_25875	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
J4N44_25880	COG0673	inositol 2-dehydrogenase activity
J4N44_25905	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
J4N44_25910	COG0673	inositol 2-dehydrogenase activity
J4N44_25915	COG3962	Belongs to the TPP enzyme family
J4N44_25925	COG2814	Major facilitator Superfamily
J4N44_25925	COG0477	Major facilitator Superfamily
J4N44_25930	COG0583	DNA-binding transcription factor activity
J4N44_25945	COG0183	Belongs to the thiolase family
J4N44_25975	COG0531	amino acid
J4N44_25980	COG1982	Orn Lys Arg decarboxylase major
J4N44_26000	COG1929	Belongs to the glycerate kinase type-1 family
J4N44_26005	COG3835	regulator
J4N44_26015	COG1228	amidohydrolase
J4N44_26040	COG0546	phosphoglycolate phosphatase activity
J4N44_26075	COG1132	(ABC) transporter
J4N44_26080	COG1132	(ABC) transporter
J4N44_26085	COG4771	TonB-dependent receptor
J4N44_26125	COG3408	Glycogen debranching enzyme
J4N44_26125	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
J4N44_26145	COG2814	Major facilitator Superfamily
J4N44_26160	COG2358	TRAP transporter, solute receptor (TAXI family
J4N44_26165	COG3047	cAMP biosynthetic process
J4N44_26170	COG1357	PFAM Pentapeptide repeats (8 copies)
J4N44_26195	COG2076	Multidrug Resistance protein
J4N44_26230	COG0583	DNA-binding transcription factor activity
J4N44_26245	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
J4N44_26260	COG3152	Membrane
J4N44_26270	COG2199	diguanylate cyclase activity
J4N44_26280	COG0561	phosphatase activity
J4N44_26290	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
J4N44_26295	COG0564	pseudouridine synthase activity
J4N44_26300	COG0534	Mate efflux family protein
J4N44_26305	COG1609	Transcriptional regulator
J4N44_26310	COG3842	ATPase activity
J4N44_26315	COG2723	6-phospho-beta-galactosidase activity
J4N44_26320	COG0395	ABC-type sugar transport system, permease component
J4N44_26335	COG1609	Transcriptional regulator
J4N44_26340	COG4580	involved in the transport of maltose and maltodextrins
J4N44_26405	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
J4N44_26415	COG0826	peptidase U32
J4N44_26435	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
J4N44_26440	COG3716	PTS system mannose fructose sorbose family IID component
J4N44_26450	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J4N44_26455	COG2222	sugar isomerase
J4N44_26465	COG1349	DNA-binding transcription factor activity
J4N44_26470	COG1349	DNA-binding transcription factor activity
J4N44_26480	COG1136	(ABC) transporter
J4N44_26485	COG0577	efflux transmembrane transporter activity
J4N44_26515	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
J4N44_26520	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
J4N44_26530	COG2259	Doxx family
J4N44_26565	COG3623	hexulose-6-phosphate isomerase
J4N44_26570	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
J4N44_26575	COG0561	phosphatase activity
J4N44_26605	COG0786	glutamate:sodium symporter activity
J4N44_26610	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
J4N44_26615	COG1131	(ABC) transporter
J4N44_26630	COG0786	glutamate:sodium symporter activity
J4N44_26655	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
J4N44_26660	COG3279	Response regulator of the LytR AlgR family
J4N44_26665	COG3275	phosphorelay sensor kinase activity
J4N44_26685	COG1136	(ABC) transporter
J4N44_26695	COG0583	DNA-binding transcription factor activity
J4N44_26700	COG1566	PFAM secretion protein HlyD family protein
J4N44_26710	COG0772	Belongs to the SEDS family
J4N44_26735	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
J4N44_26735	COG3236	hydrolase activity, hydrolyzing N-glycosyl compounds
J4N44_26745	COG0444	Belongs to the ABC transporter superfamily
J4N44_26750	COG4608	Belongs to the ABC transporter superfamily
J4N44_27270	COG2003	Belongs to the UPF0758 family
J4N44_27435	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
J4N44_27535	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
J4N44_27755	COG1459	type II secretion system
J4N44_27850	COG5001	Diguanylate cyclase
J4N44_27930	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
J4N44_27965	COG1061	Type III restriction enzyme res subunit
J4N44_28040	COG0545	Peptidyl-prolyl cis-trans isomerase