locus-tag class description J8Z27_00005 PF00308 Bacterial dnaA protein J8Z27_00005 PF08299 Bacterial dnaA protein helix-turn-helix J8Z27_00005 PF11638 DnaA N-terminal domain J8Z27_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain J8Z27_00010 PF02767 DNA polymerase III beta subunit, central domain J8Z27_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain J8Z27_00015 PF02463 RecF/RecN/SMC N terminal domain J8Z27_00020 PF01751 Toprim domain J8Z27_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_00020 PF18053 DNA gyrase B subunit insert domain J8Z27_00020 PF00986 DNA gyrase B subunit, carboxyl terminus J8Z27_00020 PF00204 DNA gyrase B J8Z27_00025 PF00011 Hsp20/alpha crystallin family J8Z27_00030 PF00155 Aminotransferase class I and II J8Z27_00035 PF05746 DALR anticodon binding domain J8Z27_00035 PF02092 Glycyl-tRNA synthetase beta subunit J8Z27_00040 PF02091 Glycyl-tRNA synthetase alpha subunit J8Z27_00045 PF01169 Uncharacterized protein family UPF0016 J8Z27_00055 PF01206 Sulfurtransferase TusA J8Z27_00065 PF03466 LysR substrate binding domain J8Z27_00065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_00070 PF08240 Alcohol dehydrogenase GroES-like domain J8Z27_00070 PF00107 Zinc-binding dehydrogenase J8Z27_00075 PF00291 Pyridoxal-phosphate dependent enzyme J8Z27_00075 PF00585 C-terminal regulatory domain of Threonine dehydratase J8Z27_00080 PF00920 Dehydratase family J8Z27_00085 PF01063 Amino-transferase class IV J8Z27_00095 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J8Z27_00095 PF00205 Thiamine pyrophosphate enzyme, central domain J8Z27_00095 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J8Z27_00100 PF13335 Magnesium chelatase, subunit ChlI C-terminal J8Z27_00100 PF01078 Magnesium chelatase, subunit ChlI J8Z27_00120 PF02899 Phage integrase, N-terminal SAM-like domain J8Z27_00120 PF00589 Phage integrase family J8Z27_00135 PF00004 ATPase family associated with various cellular activities (AAA) J8Z27_00140 PF04851 Type III restriction enzyme, res subunit J8Z27_00205 PF01553 Acyltransferase J8Z27_00210 PF01323 DSBA-like thioredoxin domain J8Z27_00215 PF01636 Phosphotransferase enzyme family J8Z27_00220 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase J8Z27_00220 PF12801 4Fe-4S binding domain J8Z27_00220 PF13746 4Fe-4S dicluster domain J8Z27_00225 PF06288 Protein of unknown function (DUF1040) J8Z27_00235 PF07070 SpoOM protein J8Z27_00240 PF03006 Haemolysin-III related J8Z27_00250 PF02386 Cation transport protein J8Z27_00255 PF02080 TrkA-C domain J8Z27_00255 PF02254 TrkA-N domain J8Z27_00260 PF01029 NusB family J8Z27_00260 PF01189 16S rRNA methyltransferase RsmB/F J8Z27_00265 PF02911 Formyl transferase, C-terminal domain J8Z27_00265 PF00551 Formyl transferase J8Z27_00270 PF01327 Polypeptide deformylase J8Z27_00275 PF02481 DNA recombination-mediator protein A J8Z27_00275 PF17782 DprA winged helix domain J8Z27_00280 PF04361 Protein of unknown function (DUF494) J8Z27_00285 PF01396 Topoisomerase DNA binding C4 zinc finger J8Z27_00290 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain J8Z27_00290 PF02222 ATP-grasp domain J8Z27_00295 PF00731 AIR carboxylase J8Z27_00300 PF01300 Telomere recombination J8Z27_00305 PF01218 Coproporphyrinogen III oxidase J8Z27_00310 PF18317 Shikimate 5'-dehydrogenase C-terminal domain J8Z27_00310 PF01488 Shikimate / quinate 5-dehydrogenase J8Z27_00310 PF08501 Shikimate dehydrogenase substrate binding domain J8Z27_00315 PF07369 Protein of unknown function (DUF1488) J8Z27_00320 PF00132 Bacterial transferase hexapeptide (six repeats) J8Z27_00385 PF00962 Adenosine/AMP deaminase J8Z27_00390 PF13188 PAS domain J8Z27_00390 PF03707 Bacterial signalling protein N terminal repeat J8Z27_00390 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_00390 PF00563 EAL domain J8Z27_00395 PF02954 Bacterial regulatory protein, Fis family J8Z27_00395 PF00072 Response regulator receiver domain J8Z27_00395 PF00158 Sigma-54 interaction domain J8Z27_00400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_00400 PF00989 PAS fold J8Z27_00400 PF00512 His Kinase A (phospho-acceptor) domain J8Z27_00405 PF00120 Glutamine synthetase, catalytic domain J8Z27_00405 PF03951 Glutamine synthetase, beta-Grasp domain J8Z27_00410 PF00009 Elongation factor Tu GTP binding domain J8Z27_00410 PF03144 Elongation factor Tu domain 2 J8Z27_00410 PF00679 Elongation factor G C-terminus J8Z27_00425 PF03631 Virulence factor BrkB J8Z27_00430 PF02580 D-Tyr-tRNA(Tyr) deacylase J8Z27_00435 PF00583 Acetyltransferase (GNAT) family J8Z27_00435 PF09500 Putative thioesterase (yiiD_Cterm) J8Z27_00445 PF01293 Phosphoenolpyruvate carboxykinase J8Z27_00450 PF01430 Hsp33 protein J8Z27_00455 PF01479 S4 domain J8Z27_00460 PF11356 Type II secretion system protein C J8Z27_00465 PF00263 Bacterial type II and III secretion system protein J8Z27_00465 PF03958 Bacterial type II/III secretion system short domain J8Z27_00470 PF00437 Type II/IV secretion system protein J8Z27_00475 PF00482 Type II secretion system (T2SS), protein F J8Z27_00480 PF07963 Prokaryotic N-terminal methylation motif J8Z27_00480 PF08334 Type II secretion system (T2SS), protein G J8Z27_00485 PF12019 Type II transport protein GspH J8Z27_00490 PF02501 Type II secretion system (T2SS), protein I J8Z27_00490 PF07963 Prokaryotic N-terminal methylation motif J8Z27_00495 PF07963 Prokaryotic N-terminal methylation motif J8Z27_00495 PF11612 Type II secretion system (T2SS), protein J J8Z27_00500 PF03934 Type II secretion system (T2SS), protein K J8Z27_00505 PF12693 GspL periplasmic domain J8Z27_00505 PF05134 Type II secretion system (T2SS), protein L J8Z27_00510 PF04612 Type II secretion system (T2SS), protein M J8Z27_00515 PF01203 Type II secretion system (T2SS), protein N J8Z27_00520 PF00512 His Kinase A (phospho-acceptor) domain J8Z27_00520 PF00672 HAMP domain J8Z27_00520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_00525 PF00486 Transcriptional regulatory protein, C terminal J8Z27_00525 PF00072 Response regulator receiver domain J8Z27_00530 PF01272 Transcription elongation factor, GreA/GreB, C-term J8Z27_00530 PF03449 Transcription elongation factor, N-terminal J8Z27_00540 PF17674 HHH domain J8Z27_00540 PF16921 Tex protein YqgF-like domain J8Z27_00540 PF09371 Tex-like protein N-terminal domain J8Z27_00540 PF00575 S1 RNA binding domain J8Z27_00550 PF00561 alpha/beta hydrolase fold J8Z27_00555 PF00156 Phosphoribosyl transferase domain J8Z27_00560 PF01521 Iron-sulphur cluster biosynthesis J8Z27_00560 PF01106 NifU-like domain J8Z27_00565 PF00293 NUDIX domain J8Z27_00570 PF00459 Inositol monophosphatase family J8Z27_00575 PF00156 Phosphoribosyl transferase domain J8Z27_00580 PF01138 3' exoribonuclease family, domain 1 J8Z27_00580 PF03725 3' exoribonuclease family, domain 2 J8Z27_00585 PF03755 YicC-like family, N-terminal region J8Z27_00585 PF08340 Domain of unknown function (DUF1732) J8Z27_00590 PF00860 Permease family J8Z27_00595 PF00625 Guanylate kinase J8Z27_00600 PF01192 RNA polymerase Rpb6 J8Z27_00605 PF02824 TGS domain J8Z27_00605 PF13291 ACT domain J8Z27_00605 PF04607 Region found in RelA / SpoT proteins J8Z27_00610 PF12105 SpoU, rRNA methylase, C-terminal J8Z27_00610 PF00588 SpoU rRNA Methylase family J8Z27_00615 PF00271 Helicase conserved C-terminal domain J8Z27_00615 PF00270 DEAD/DEAH box helicase J8Z27_00615 PF17191 RecG wedge domain J8Z27_00620 PF03279 Bacterial lipid A biosynthesis acyltransferase J8Z27_00625 PF03279 Bacterial lipid A biosynthesis acyltransferase J8Z27_00630 PF00440 Bacterial regulatory proteins, tetR family J8Z27_00635 PF02441 Flavoprotein J8Z27_00635 PF04127 DNA / pantothenate metabolism flavoprotein J8Z27_00640 PF04002 RadC-like JAB domain J8Z27_00645 PF00830 Ribosomal L28 family J8Z27_00650 PF00471 Ribosomal protein L33 J8Z27_00660 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain J8Z27_00660 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain J8Z27_00660 PF06827 Zinc finger found in FPG and IleRS J8Z27_00665 PF01467 Cytidylyltransferase-like J8Z27_00670 PF01075 Glycosyltransferase family 9 (heptosyltransferase) J8Z27_00675 PF00535 Glycosyl transferase family 2 J8Z27_00680 PF01075 Glycosyltransferase family 9 (heptosyltransferase) J8Z27_00690 PF00175 Oxidoreductase NAD-binding domain J8Z27_00690 PF00970 Oxidoreductase FAD-binding domain J8Z27_00690 PF00111 2Fe-2S iron-sulfur cluster binding domain J8Z27_00695 PF00483 Nucleotidyl transferase J8Z27_00700 PF16363 GDP-mannose 4,6 dehydratase J8Z27_00705 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J8Z27_00710 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase J8Z27_00735 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) J8Z27_00735 PF00534 Glycosyl transferases group 1 J8Z27_00740 PF04488 Glycosyltransferase sugar-binding region containing DXD motif J8Z27_00750 PF01075 Glycosyltransferase family 9 (heptosyltransferase) J8Z27_00755 PF00132 Bacterial transferase hexapeptide (six repeats) J8Z27_00755 PF14602 Hexapeptide repeat of succinyl-transferase J8Z27_00755 PF12464 Maltose acetyltransferase J8Z27_00765 PF04932 O-Antigen ligase J8Z27_00770 PF00534 Glycosyl transferases group 1 J8Z27_00775 PF01370 NAD dependent epimerase/dehydratase family J8Z27_00780 PF16363 GDP-mannose 4,6 dehydratase J8Z27_00785 PF00483 Nucleotidyl transferase J8Z27_00790 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase J8Z27_00795 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J8Z27_00810 PF00664 ABC transporter transmembrane region J8Z27_00810 PF00005 ABC transporter J8Z27_00815 PF02719 Polysaccharide biosynthesis protein J8Z27_00820 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J8Z27_00825 PF02350 UDP-N-acetylglucosamine 2-epimerase J8Z27_00830 PF08666 SAF domain J8Z27_00830 PF03102 NeuB family J8Z27_00845 PF00483 Nucleotidyl transferase J8Z27_00850 PF02348 Cytidylyltransferase J8Z27_00885 PF00535 Glycosyl transferase family 2 J8Z27_00900 PF02397 Bacterial sugar transferase J8Z27_00905 PF13091 PLD-like domain J8Z27_00910 PF03099 Biotin/lipoate A/B protein ligase family J8Z27_00910 PF08279 HTH domain J8Z27_00910 PF02237 Biotin protein ligase C terminal domain J8Z27_00915 PF01565 FAD binding domain J8Z27_00915 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain J8Z27_00925 PF08220 DeoR-like helix-turn-helix domain J8Z27_00925 PF00455 DeoR C terminal sensor domain J8Z27_00940 PF00166 Chaperonin 10 Kd subunit J8Z27_00945 PF00118 TCP-1/cpn60 chaperonin family J8Z27_00950 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J8Z27_00950 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J8Z27_00950 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J8Z27_00955 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded J8Z27_00960 PF06005 Cell division protein ZapB J8Z27_00965 PF02219 Methylenetetrahydrofolate reductase J8Z27_00970 PF03447 Homoserine dehydrogenase, NAD binding domain J8Z27_00970 PF00742 Homoserine dehydrogenase J8Z27_00970 PF00696 Amino acid kinase family J8Z27_00975 PF01053 Cys/Met metabolism PLP-dependent enzyme J8Z27_00980 PF01340 Met Apo-repressor, MetJ J8Z27_00985 PF00390 Malic enzyme, N-terminal domain J8Z27_00985 PF03949 Malic enzyme, NAD binding domain J8Z27_00990 PF01197 Ribosomal protein L31 J8Z27_00995 PF18319 PriA DNA helicase Cys-rich region (CRR) domain J8Z27_00995 PF17764 3′ DNA-binding domain (3′BD) J8Z27_00995 PF00271 Helicase conserved C-terminal domain J8Z27_00995 PF00270 DEAD/DEAH box helicase J8Z27_00995 PF18074 Primosomal protein N C-terminal domain J8Z27_01000 PF00356 Bacterial regulatory proteins, lacI family J8Z27_01005 PF05036 Sporulation related domain J8Z27_01010 PF00227 Proteasome subunit J8Z27_01015 PF00004 ATPase family associated with various cellular activities (AAA) J8Z27_01015 PF07724 AAA domain (Cdc48 subfamily) J8Z27_01020 PF01609 Transposase DDE domain J8Z27_01020 PF13006 Insertion element 4 transposase N-terminal J8Z27_01025 PF02313 Fumarate reductase subunit D J8Z27_01030 PF02300 Fumarate reductase subunit C J8Z27_01035 PF13183 4Fe-4S dicluster domain J8Z27_01035 PF13085 2Fe-2S iron-sulfur cluster binding domain J8Z27_01040 PF00890 FAD binding domain J8Z27_01040 PF02910 Fumarate reductase flavoprotein C-term J8Z27_01045 PF00152 tRNA synthetases class II (D, K and N) J8Z27_01050 PF06082 Exopolysaccharide biosynthesis protein YbjH J8Z27_01055 PF06251 Capsule biosynthesis GfcC J8Z27_01060 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF J8Z27_01085 PF00581 Rhodanese-like domain J8Z27_01090 PF02556 Preprotein translocase subunit SecB J8Z27_01095 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus J8Z27_01095 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus J8Z27_01100 PF06426 Serine acetyltransferase, N-terminal J8Z27_01100 PF00132 Bacterial transferase hexapeptide (six repeats) J8Z27_01105 PF10400 Virulence activator alpha C-term J8Z27_01105 PF03551 Transcriptional regulator PadR-like family J8Z27_01110 PF00311 Phosphoenolpyruvate carboxylase J8Z27_01115 PF03167 Uracil DNA glycosylase superfamily J8Z27_01120 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J8Z27_01125 PF04222 Protein of unknown function (DUF416) J8Z27_01130 PF00571 CBS domain J8Z27_01130 PF01595 Cyclin M transmembrane N-terminal domain J8Z27_01135 PF00216 Bacterial DNA-binding protein J8Z27_01145 PF02844 Phosphoribosylglycinamide synthetase, N domain J8Z27_01145 PF02843 Phosphoribosylglycinamide synthetase, C domain J8Z27_01145 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain J8Z27_01150 PF02142 MGS-like domain J8Z27_01150 PF01808 AICARFT/IMPCHase bienzyme J8Z27_01155 PF13411 MerR HTH family regulatory protein J8Z27_01160 PF08448 PAS fold J8Z27_01160 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_01165 PF02954 Bacterial regulatory protein, Fis family J8Z27_01170 PF01207 Dihydrouridine synthase (Dus) J8Z27_01180 PF02785 Biotin carboxylase C-terminal domain J8Z27_01180 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J8Z27_01180 PF00289 Biotin carboxylase, N-terminal domain J8Z27_01185 PF00364 Biotin-requiring enzyme J8Z27_01190 PF01220 Dehydroquinase class II J8Z27_01195 PF16177 Acetyl-coenzyme A synthetase N-terminus J8Z27_01195 PF00501 AMP-binding enzyme J8Z27_01195 PF13193 AMP-binding enzyme C-terminal domain J8Z27_01210 PF12832 MFS_1 like family J8Z27_01215 PF00072 Response regulator receiver domain J8Z27_01215 PF09308 LuxQ, periplasmic J8Z27_01215 PF00512 His Kinase A (phospho-acceptor) domain J8Z27_01215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_01220 PF00485 Phosphoribulokinase / Uridine kinase family J8Z27_01245 PF00009 Elongation factor Tu GTP binding domain J8Z27_01245 PF03144 Elongation factor Tu domain 2 J8Z27_01245 PF03143 Elongation factor Tu C-terminal domain J8Z27_01250 PF00584 SecE/Sec61-gamma subunits of protein translocation complex J8Z27_01255 PF02357 Transcription termination factor nusG J8Z27_01255 PF00467 KOW motif J8Z27_01260 PF03946 Ribosomal protein L11, N-terminal domain J8Z27_01260 PF00298 Ribosomal protein L11, RNA binding domain J8Z27_01265 PF00687 Ribosomal protein L1p/L10e family J8Z27_01270 PF00466 Ribosomal protein L10 J8Z27_01275 PF16320 Ribosomal protein L7/L12 dimerisation domain J8Z27_01275 PF00542 Ribosomal protein L7/L12 C-terminal domain J8Z27_01280 PF04565 RNA polymerase Rpb2, domain 3 J8Z27_01280 PF04560 RNA polymerase Rpb2, domain 7 J8Z27_01280 PF00562 RNA polymerase Rpb2, domain 6 J8Z27_01280 PF10385 RNA polymerase beta subunit external 1 domain J8Z27_01280 PF04563 RNA polymerase beta subunit J8Z27_01280 PF04561 RNA polymerase Rpb2, domain 2 J8Z27_01285 PF05000 RNA polymerase Rpb1, domain 4 J8Z27_01285 PF04998 RNA polymerase Rpb1, domain 5 J8Z27_01285 PF04983 RNA polymerase Rpb1, domain 3 J8Z27_01285 PF00623 RNA polymerase Rpb1, domain 2 J8Z27_01285 PF04997 RNA polymerase Rpb1, domain 1 J8Z27_01290 PF03605 Anaerobic c4-dicarboxylate membrane transporter J8Z27_01295 PF10415 Fumarase C C-terminus J8Z27_01295 PF00206 Lyase J8Z27_01300 PF04186 FxsA cytoplasmic membrane protein J8Z27_01370 PF00117 Glutamine amidotransferase class-I J8Z27_01375 PF00202 Aminotransferase class-III J8Z27_01380 PF04958 Arginine N-succinyltransferase beta subunit J8Z27_01385 PF00171 Aldehyde dehydrogenase family J8Z27_01395 PF02666 Phosphatidylserine decarboxylase J8Z27_01400 PF03193 RsgA GTPase J8Z27_01405 PF00929 Exonuclease J8Z27_01455 PF08331 Domain of unknown function (DUF1730) J8Z27_01460 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE J8Z27_01465 PF01520 N-acetylmuramoyl-L-alanine amidase J8Z27_01470 PF01119 DNA mismatch repair protein, C-terminal domain J8Z27_01470 PF08676 MutL C terminal dimerisation domain J8Z27_01480 PF17209 Hfq protein J8Z27_01485 PF16360 GTP-binding GTPase Middle Region J8Z27_01485 PF01926 50S ribosome-binding GTPase J8Z27_01485 PF13167 GTP-binding GTPase N-terminal J8Z27_01490 PF01145 SPFH domain / Band 7 family J8Z27_01490 PF12221 Bacterial membrane protein N terminal J8Z27_01495 PF01145 SPFH domain / Band 7 family J8Z27_01500 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) J8Z27_01505 PF04102 SlyX J8Z27_01515 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J8Z27_01515 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J8Z27_01520 PF13309 HTH domain J8Z27_01520 PF08348 YheO-like PAS domain J8Z27_01525 PF02635 DsrE/DsrF-like family J8Z27_01530 PF02635 DsrE/DsrF-like family J8Z27_01535 PF04077 DsrH like protein J8Z27_01540 PF00164 Ribosomal protein S12/S23 J8Z27_01545 PF00177 Ribosomal protein S7p/S5e J8Z27_01550 PF14492 Elongation Factor G, domain II J8Z27_01550 PF03764 Elongation factor G, domain IV J8Z27_01550 PF03144 Elongation factor Tu domain 2 J8Z27_01550 PF00679 Elongation factor G C-terminus J8Z27_01550 PF00009 Elongation factor Tu GTP binding domain J8Z27_01555 PF03144 Elongation factor Tu domain 2 J8Z27_01555 PF03143 Elongation factor Tu C-terminal domain J8Z27_01555 PF00009 Elongation factor Tu GTP binding domain J8Z27_01560 PF04324 BFD-like [2Fe-2S] binding domain J8Z27_01565 PF00210 Ferritin-like domain J8Z27_01570 PF01250 Ribosomal protein S6 J8Z27_01575 PF01084 Ribosomal protein S18 J8Z27_01580 PF03948 Ribosomal protein L9, C-terminal domain J8Z27_01580 PF01281 Ribosomal protein L9, N-terminal domain J8Z27_01590 PF00772 DnaB-like helicase N terminal domain J8Z27_01590 PF03796 DnaB-like helicase C terminal domain J8Z27_01595 PF01168 Alanine racemase, N-terminal domain J8Z27_01595 PF00842 Alanine racemase, C-terminal domain J8Z27_01600 PF01894 Uncharacterised protein family UPF0047 J8Z27_01605 PF00342 Phosphoglucose isomerase J8Z27_01625 PF00005 ABC transporter J8Z27_01640 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) J8Z27_01650 PF01625 Peptide methionine sulfoxide reductase J8Z27_01655 PF01103 Surface antigen J8Z27_01655 PF17243 POTRA domain TamA domain 1 J8Z27_01655 PF07244 Surface antigen variable number repeat J8Z27_01660 PF04357 TamB, inner membrane protein subunit of TAM complex J8Z27_01665 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like J8Z27_01670 PF00719 Inorganic pyrophosphatase J8Z27_01675 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain J8Z27_01680 PF01225 Mur ligase family, catalytic domain J8Z27_01680 PF02875 Mur ligase family, glutamate ligase domain J8Z27_01680 PF08245 Mur ligase middle domain J8Z27_01685 PF02441 Flavoprotein J8Z27_01695 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_01700 PF00005 ABC transporter J8Z27_01710 PF00005 ABC transporter J8Z27_01710 PF17755 UvrA DNA-binding domain J8Z27_01710 PF17760 UvrA interaction domain J8Z27_01715 PF00483 Nucleotidyl transferase J8Z27_01720 PF00196 Bacterial regulatory proteins, luxR family J8Z27_01725 PF00436 Single-strand binding protein family J8Z27_01730 PF17157 Gammaproteobacterial periplasmic sensor domain J8Z27_01730 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_01730 PF00563 EAL domain J8Z27_01750 PF00263 Bacterial type II and III secretion system protein J8Z27_01750 PF03958 Bacterial type II/III secretion system short domain J8Z27_01755 PF13401 AAA domain J8Z27_01755 PF01471 Putative peptidoglycan binding domain J8Z27_01765 PF00437 Type II/IV secretion system protein J8Z27_01765 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J8Z27_01770 PF00482 Type II secretion system (T2SS), protein F J8Z27_01780 PF07963 Prokaryotic N-terminal methylation motif J8Z27_01785 PF07963 Prokaryotic N-terminal methylation motif J8Z27_01820 PF04085 rod shape-determining protein MreC J8Z27_01825 PF04093 rod shape-determining protein MreD J8Z27_01830 PF02545 Maf-like protein J8Z27_01835 PF10150 Ribonuclease E/G family J8Z27_01835 PF00575 S1 RNA binding domain J8Z27_01840 PF13116 Protein of unknown function J8Z27_01840 PF13502 AsmA-like C-terminal region J8Z27_01845 PF00795 Carbon-nitrogen hydrolase J8Z27_01850 PF01523 Putative modulator of DNA gyrase J8Z27_01900 PF01464 Transglycosylase SLT domain J8Z27_01900 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain J8Z27_01905 PF04362 Bacterial Fe(2+) trafficking J8Z27_01910 PF00730 HhH-GPD superfamily base excision DNA repair protein J8Z27_01910 PF00633 Helix-hairpin-helix motif J8Z27_01910 PF14815 NUDIX domain J8Z27_01915 PF02390 Putative methyltransferase J8Z27_01920 PF04960 Glutaminase J8Z27_01925 PF06969 HemN C-terminal domain J8Z27_01925 PF04055 Radical SAM superfamily J8Z27_01930 PF01725 Ham1 family J8Z27_01945 PF13006 Insertion element 4 transposase N-terminal J8Z27_01945 PF01609 Transposase DDE domain J8Z27_01960 PF02594 Uncharacterised ACR, YggU family COG1872 J8Z27_01965 PF02325 YGGT family J8Z27_01970 PF14748 Pyrroline-5-carboxylate reductase dimerisation J8Z27_01970 PF03807 NADP oxidoreductase coenzyme F420-dependent J8Z27_01975 PF01168 Alanine racemase, N-terminal domain J8Z27_01980 PF00437 Type II/IV secretion system protein J8Z27_01985 PF00437 Type II/IV secretion system protein J8Z27_01990 PF03652 Holliday junction resolvase J8Z27_01995 PF02622 Uncharacterized ACR, COG1678 J8Z27_02000 PF02951 Prokaryotic glutathione synthetase, N-terminal domain J8Z27_02000 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain J8Z27_02005 PF04452 RNA methyltransferase J8Z27_02010 PF04231 Endonuclease I J8Z27_02015 PF17283 SprT-like zinc ribbon domain J8Z27_02015 PF10263 SprT-like family J8Z27_02025 PF02772 S-adenosylmethionine synthetase, central domain J8Z27_02025 PF00438 S-adenosylmethionine synthetase, N-terminal domain J8Z27_02025 PF02773 S-adenosylmethionine synthetase, C-terminal domain J8Z27_02030 PF02779 Transketolase, pyrimidine binding domain J8Z27_02030 PF02780 Transketolase, C-terminal domain J8Z27_02030 PF00456 Transketolase, thiamine diphosphate binding domain J8Z27_02035 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J8Z27_02035 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J8Z27_02040 PF00162 Phosphoglycerate kinase J8Z27_02045 PF01116 Fructose-bisphosphate aldolase class-II J8Z27_02050 PF00924 Mechanosensitive ion channel J8Z27_02050 PF05552 Conserved TM helix J8Z27_02060 PF01810 LysE type translocator J8Z27_02065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_02065 PF03466 LysR substrate binding domain J8Z27_02070 PF04402 Protein of unknown function (DUF541) J8Z27_02075 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_02075 PF07694 5TMR of 5TMR-LYT J8Z27_02085 PF02887 Pyruvate kinase, alpha/beta domain J8Z27_02085 PF00224 Pyruvate kinase, barrel domain J8Z27_02090 PF08220 DeoR-like helix-turn-helix domain J8Z27_02090 PF00455 DeoR C terminal sensor domain J8Z27_02095 PF01380 SIS domain J8Z27_02100 PF00694 Aconitase C-terminal domain J8Z27_02105 PF00330 Aconitase family (aconitate hydratase) J8Z27_02110 PF00180 Isocitrate/isopropylmalate dehydrogenase J8Z27_02115 PF08502 LeuA allosteric (dimerisation) domain J8Z27_02115 PF00682 HMGL-like J8Z27_02130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_02130 PF03466 LysR substrate binding domain J8Z27_02135 PF00501 AMP-binding enzyme J8Z27_02140 PF00205 Thiamine pyrophosphate enzyme, central domain J8Z27_02140 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J8Z27_02140 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J8Z27_02145 PF10369 Small subunit of acetolactate synthase J8Z27_02150 PF03009 Glycerophosphoryl diester phosphodiesterase family J8Z27_02155 PF07690 Major Facilitator Superfamily J8Z27_02160 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J8Z27_02160 PF01842 ACT domain J8Z27_02160 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J8Z27_02165 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) J8Z27_02170 PF01812 5-formyltetrahydrofolate cyclo-ligase family J8Z27_02185 PF03695 Uncharacterised protein family (UPF0149) J8Z27_02190 PF01494 FAD binding domain J8Z27_02195 PF01494 FAD binding domain J8Z27_02210 PF01571 Aminomethyltransferase folate-binding domain J8Z27_02215 PF03937 Flavinator of succinate dehydrogenase J8Z27_02220 PF02910 Fumarate reductase flavoprotein C-term J8Z27_02220 PF00890 FAD binding domain J8Z27_02225 PF04542 Sigma-70 region 2 J8Z27_02225 PF08281 Sigma-70, region 4 J8Z27_02230 PF03873 Anti sigma-E protein RseA, C-terminal domain J8Z27_02230 PF03872 Anti sigma-E protein RseA, N-terminal domain J8Z27_02235 PF03888 MucB/RseB N-terminal domain J8Z27_02235 PF17188 MucB/RseB C-terminal domain J8Z27_02245 PF00679 Elongation factor G C-terminus J8Z27_02245 PF00009 Elongation factor Tu GTP binding domain J8Z27_02245 PF06421 GTP-binding protein LepA C-terminus J8Z27_02245 PF03144 Elongation factor Tu domain 2 J8Z27_02250 PF10502 Signal peptidase, peptidase S26 J8Z27_02255 PF00035 Double-stranded RNA binding motif J8Z27_02255 PF14622 Ribonuclease-III-like J8Z27_02260 PF07650 KH domain J8Z27_02260 PF01926 50S ribosome-binding GTPase J8Z27_02265 PF02565 Recombination protein O C terminal J8Z27_02265 PF11967 Recombination protein O N terminal J8Z27_02270 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ J8Z27_02275 PF01648 4'-phosphopantetheinyl transferase superfamily J8Z27_02280 PF00672 HAMP domain J8Z27_02280 PF00072 Response regulator receiver domain J8Z27_02280 PF01627 Hpt domain J8Z27_02280 PF00512 His Kinase A (phospho-acceptor) domain J8Z27_02280 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J8Z27_02280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_02285 PF01938 TRAM domain J8Z27_02285 PF05958 tRNA (Uracil-5-)-methyltransferase J8Z27_02290 PF13291 ACT domain J8Z27_02290 PF04607 Region found in RelA / SpoT proteins J8Z27_02290 PF02824 TGS domain J8Z27_02295 PF03819 MazG nucleotide pyrophosphohydrolase domain J8Z27_02300 PF06418 CTP synthase N-terminus J8Z27_02300 PF00117 Glutamine amidotransferase class-I J8Z27_02305 PF03952 Enolase, N-terminal domain J8Z27_02305 PF00113 Enolase, C-terminal TIM barrel domain J8Z27_02310 PF12627 Probable RNA and SrmB- binding site of polymerase A J8Z27_02310 PF01966 HD domain J8Z27_02310 PF01743 Poly A polymerase head domain J8Z27_02315 PF13401 AAA domain J8Z27_02315 PF01471 Putative peptidoglycan binding domain J8Z27_02320 PF16537 Type II secretion system protein B J8Z27_02325 PF08239 Bacterial SH3 domain J8Z27_02330 PF01384 Phosphate transporter family J8Z27_02335 PF01865 Protein of unknown function DUF47 J8Z27_02340 PF01928 CYTH domain J8Z27_02345 PF07885 Ion channel J8Z27_02345 PF00027 Cyclic nucleotide-binding domain J8Z27_02350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J8Z27_02350 PF00672 HAMP domain J8Z27_02355 PF08335 GlnD PII-uridylyltransferase J8Z27_02355 PF03710 Glutamate-ammonia ligase adenylyltransferase J8Z27_02360 PF01467 Cytidylyltransferase-like J8Z27_02360 PF00294 pfkB family carbohydrate kinase J8Z27_02365 PF00072 Response regulator receiver domain J8Z27_02365 PF00486 Transcriptional regulatory protein, C terminal J8Z27_02375 PF03737 Aldolase/RraA J8Z27_02385 PF03447 Homoserine dehydrogenase, NAD binding domain J8Z27_02385 PF00742 Homoserine dehydrogenase J8Z27_02385 PF13840 ACT domain J8Z27_02385 PF01842 ACT domain J8Z27_02385 PF00696 Amino acid kinase family J8Z27_02390 PF08544 GHMP kinases C terminal J8Z27_02390 PF00288 GHMP kinases N terminal domain J8Z27_02395 PF00291 Pyridoxal-phosphate dependent enzyme J8Z27_02395 PF14821 Threonine synthase N terminus J8Z27_02400 PF03458 UPF0126 domain J8Z27_02405 PF01497 Periplasmic binding protein J8Z27_02415 PF01048 Phosphorylase superfamily J8Z27_02420 PF00312 Ribosomal protein S15 J8Z27_02425 PF00575 S1 RNA binding domain J8Z27_02425 PF03725 3' exoribonuclease family, domain 2 J8Z27_02425 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain J8Z27_02425 PF00013 KH domain J8Z27_02425 PF01138 3' exoribonuclease family, domain 1 J8Z27_02430 PF13181 Tetratricopeptide repeat J8Z27_02430 PF07719 Tetratricopeptide repeat J8Z27_02440 PF01554 MatE J8Z27_02445 PF02954 Bacterial regulatory protein, Fis family J8Z27_02445 PF00072 Response regulator receiver domain J8Z27_02445 PF00158 Sigma-54 interaction domain J8Z27_02455 PF00248 Aldo/keto reductase family J8Z27_02465 PF02976 DNA mismatch repair enzyme MutH J8Z27_02470 PF00293 NUDIX domain J8Z27_02475 PF01590 GAF domain J8Z27_02475 PF05524 PEP-utilising enzyme, N-terminal J8Z27_02475 PF00391 PEP-utilising enzyme, mobile domain J8Z27_02475 PF02896 PEP-utilising enzyme, TIM barrel domain J8Z27_02480 PF01925 Sulfite exporter TauE/SafE J8Z27_02485 PF01790 Prolipoprotein diacylglyceryl transferase J8Z27_02490 PF00303 Thymidylate synthase J8Z27_02495 PF02690 Na+/Pi-cotransporter J8Z27_02500 PF03466 LysR substrate binding domain J8Z27_02500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_02505 PF01022 Bacterial regulatory protein, arsR family J8Z27_02510 PF01649 Ribosomal protein S20 J8Z27_02515 PF03023 Lipid II flippase MurJ J8Z27_02520 PF06574 FAD synthetase J8Z27_02520 PF01687 Riboflavin kinase J8Z27_02525 PF08264 Anticodon-binding domain of tRNA J8Z27_02525 PF00133 tRNA synthetases class I (I, L, M and V) J8Z27_02525 PF06827 Zinc finger found in FPG and IleRS J8Z27_02530 PF01252 Signal peptidase (SPase) II J8Z27_02535 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J8Z27_02540 PF02401 LytB protein J8Z27_02545 PF02554 Carbon starvation protein CstA J8Z27_02555 PF13580 SIS domain J8Z27_02560 PF03702 Anhydro-N-acetylmuramic acid kinase J8Z27_02565 PF01869 BadF/BadG/BcrA/BcrD ATPase family J8Z27_02575 PF01418 Helix-turn-helix domain, rpiR family J8Z27_02575 PF01380 SIS domain J8Z27_02580 PF00933 Glycosyl hydrolase family 3 N terminal domain J8Z27_02585 PF04397 LytTr DNA-binding domain J8Z27_02585 PF00072 Response regulator receiver domain J8Z27_02590 PF07694 5TMR of 5TMR-LYT J8Z27_02590 PF06580 Histidine kinase J8Z27_02595 PF00793 DAHP synthetase I family J8Z27_02600 PF01817 Chorismate mutase type II J8Z27_02600 PF02153 Prephenate dehydrogenase J8Z27_02605 PF04225 Opacity-associated protein A LysM-like domain J8Z27_02605 PF01551 Peptidase family M23 J8Z27_02610 PF07238 PilZ domain J8Z27_02615 PF00005 ABC transporter J8Z27_02615 PF12848 ABC transporter J8Z27_02620 PF14718 Soluble lytic murein transglycosylase L domain J8Z27_02620 PF01464 Transglycosylase SLT domain J8Z27_02625 PF01371 Trp repressor protein J8Z27_02630 PF01931 Protein of unknown function DUF84 J8Z27_02635 PF00563 EAL domain J8Z27_02635 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_02640 PF13416 Bacterial extracellular solute-binding protein J8Z27_02645 PF01817 Chorismate mutase type II J8Z27_02645 PF00800 Prephenate dehydratase J8Z27_02650 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein J8Z27_02655 PF00497 Bacterial extracellular solute-binding proteins, family 3 J8Z27_02655 PF01464 Transglycosylase SLT domain J8Z27_02660 PF13525 Outer membrane lipoprotein J8Z27_02665 PF00849 RNA pseudouridylate synthase J8Z27_02665 PF01479 S4 domain J8Z27_02670 PF02578 Multi-copper polyphenol oxidoreductase laccase J8Z27_02675 PF00004 ATPase family associated with various cellular activities (AAA) J8Z27_02675 PF07724 AAA domain (Cdc48 subfamily) J8Z27_02675 PF17871 AAA lid domain J8Z27_02675 PF02861 Clp amino terminal domain, pathogenicity island component J8Z27_02675 PF10431 C-terminal, D2-small domain, of ClpB protein J8Z27_02720 PF00459 Inositol monophosphatase family J8Z27_02725 PF00588 SpoU rRNA Methylase family J8Z27_02730 PF02082 Transcriptional regulator J8Z27_02735 PF00266 Aminotransferase class-V J8Z27_02740 PF01592 NifU-like N terminal domain J8Z27_02745 PF01521 Iron-sulphur cluster biosynthesis J8Z27_02750 PF07743 HSCB C-terminal oligomerisation domain J8Z27_02750 PF00226 DnaJ domain J8Z27_02755 PF00012 Hsp70 protein J8Z27_02760 PF00111 2Fe-2S iron-sulfur cluster binding domain J8Z27_02765 PF04384 Iron-sulphur cluster assembly J8Z27_02770 PF00883 Cytosol aminopeptidase family, catalytic domain J8Z27_02770 PF12404 Peptidase J8Z27_02775 PF00334 Nucleoside diphosphate kinase J8Z27_02780 PF00679 Elongation factor G C-terminus J8Z27_02780 PF14492 Elongation Factor G, domain II J8Z27_02780 PF03764 Elongation factor G, domain IV J8Z27_02780 PF00009 Elongation factor Tu GTP binding domain J8Z27_02780 PF03144 Elongation factor Tu domain 2 J8Z27_02785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_02785 PF03466 LysR substrate binding domain J8Z27_02795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_02795 PF03466 LysR substrate binding domain J8Z27_02800 PF00501 AMP-binding enzyme J8Z27_02805 PF02805 Metal binding domain of Ada J8Z27_02805 PF12833 Helix-turn-helix domain J8Z27_02835 PF00263 Bacterial type II and III secretion system protein J8Z27_02835 PF04972 BON domain J8Z27_02835 PF13629 Pilus formation protein N terminal region J8Z27_02865 PF00437 Type II/IV secretion system protein J8Z27_02885 PF02417 Chromate transporter J8Z27_02890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_02890 PF03466 LysR substrate binding domain J8Z27_02900 PF12833 Helix-turn-helix domain J8Z27_02905 PF02056 Family 4 glycosyl hydrolase J8Z27_02905 PF11975 Family 4 glycosyl hydrolase C-terminal domain J8Z27_02920 PF16363 GDP-mannose 4,6 dehydratase J8Z27_02925 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain J8Z27_02925 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain J8Z27_02930 PF10509 Galactokinase galactose-binding signature J8Z27_02930 PF08544 GHMP kinases C terminal J8Z27_02930 PF00288 GHMP kinases N terminal domain J8Z27_02935 PF01263 Aldose 1-epimerase J8Z27_02940 PF00356 Bacterial regulatory proteins, lacI family J8Z27_02955 PF00563 EAL domain J8Z27_02955 PF03707 Bacterial signalling protein N terminal repeat J8Z27_02955 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_02960 PF00356 Bacterial regulatory proteins, lacI family J8Z27_02975 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J8Z27_02975 PF02378 Phosphotransferase system, EIIC J8Z27_02975 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J8Z27_02985 PF14602 Hexapeptide repeat of succinyl-transferase J8Z27_02985 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle J8Z27_02990 PF00578 AhpC/TSA family J8Z27_02990 PF10417 C-terminal domain of 1-Cys peroxiredoxin J8Z27_02995 PF03466 LysR substrate binding domain J8Z27_02995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_03000 PF01274 Malate synthase J8Z27_03005 PF00463 Isocitrate lyase family J8Z27_03025 PF00571 CBS domain J8Z27_03030 PF02547 Queuosine biosynthesis protein J8Z27_03035 PF01702 Queuine tRNA-ribosyltransferase J8Z27_03040 PF02699 Preprotein translocase subunit J8Z27_03045 PF13721 SecD export protein N-terminal TM region J8Z27_03045 PF07549 SecD/SecF GG Motif J8Z27_03045 PF02355 Protein export membrane protein J8Z27_03050 PF02355 Protein export membrane protein J8Z27_03050 PF07549 SecD/SecF GG Motif J8Z27_03060 PF03411 Penicillin-insensitive murein endopeptidase J8Z27_03065 PF13006 Insertion element 4 transposase N-terminal J8Z27_03065 PF01609 Transposase DDE domain J8Z27_03070 PF12838 4Fe-4S dicluster domain J8Z27_03075 PF16325 Peptidase family U32 C-terminal domain J8Z27_03075 PF01136 Peptidase family U32 J8Z27_03080 PF04381 Putative exonuclease, RdgC J8Z27_03085 PF00072 Response regulator receiver domain J8Z27_03085 PF00486 Transcriptional regulatory protein, C terminal J8Z27_03090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_03090 PF00512 His Kinase A (phospho-acceptor) domain J8Z27_03090 PF00989 PAS fold J8Z27_03090 PF11808 Phosphate regulon sensor protein PhoR J8Z27_03095 PF12849 PBP superfamily domain J8Z27_03100 PF02541 Ppx/GppA phosphatase family J8Z27_03105 PF02503 Polyphosphate kinase middle domain J8Z27_03105 PF13089 Polyphosphate kinase N-terminal domain J8Z27_03105 PF17941 Polyphosphate kinase C-terminal domain 1 J8Z27_03105 PF13090 Polyphosphate kinase C-terminal domain 2 J8Z27_03110 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_03115 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_03120 PF00005 ABC transporter J8Z27_03125 PF01895 PhoU domain J8Z27_03130 PF03976 Polyphosphate kinase 2 (PPK2) J8Z27_03135 PF03932 CutC family J8Z27_03140 PF01609 Transposase DDE domain J8Z27_03140 PF13006 Insertion element 4 transposase N-terminal J8Z27_03145 PF07130 YebG protein J8Z27_03150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_03150 PF03466 LysR substrate binding domain J8Z27_03160 PF17946 RecC C-terminal domain J8Z27_03165 PF12705 PD-(D/E)XK nuclease superfamily J8Z27_03165 PF00580 UvrD/REP helicase N-terminal domain J8Z27_03165 PF13361 UvrD-like helicase C-terminal domain J8Z27_03170 PF13538 UvrD-like helicase C-terminal domain J8Z27_03180 PF00696 Amino acid kinase family J8Z27_03180 PF00583 Acetyltransferase (GNAT) family J8Z27_03190 PF06725 3D domain J8Z27_03190 PF03562 MltA specific insert domain J8Z27_03195 PF00899 ThiF family J8Z27_03200 PF02657 Fe-S metabolism associated domain J8Z27_03205 PF04055 Radical SAM superfamily J8Z27_03210 PF13464 Domain of unknown function (DUF4115) J8Z27_03215 PF04551 GcpE protein J8Z27_03220 PF03129 Anticodon binding domain J8Z27_03220 PF13393 Histidyl-tRNA synthetase J8Z27_03225 PF09976 Tetratricopeptide repeat-like domain J8Z27_03230 PF13360 PQQ-like domain J8Z27_03235 PF01926 50S ribosome-binding GTPase J8Z27_03235 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal J8Z27_03240 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J8Z27_03240 PF01411 tRNA synthetases class II (A) J8Z27_03240 PF02272 DHHA1 domain J8Z27_03250 PF13742 OB-fold nucleic acid binding domain J8Z27_03250 PF02601 Exonuclease VII, large subunit J8Z27_03255 PF00478 IMP dehydrogenase / GMP reductase domain J8Z27_03255 PF00571 CBS domain J8Z27_03260 PF02540 NAD synthase J8Z27_03260 PF00958 GMP synthase C terminal domain J8Z27_03260 PF00117 Glutamine amidotransferase class-I J8Z27_03265 PF06483 Chitinase C J8Z27_03265 PF00704 Glycosyl hydrolases family 18 J8Z27_03270 PF01184 GPR1/FUN34/yaaH family J8Z27_03275 PF01235 Sodium:alanine symporter family J8Z27_03280 PF01266 FAD dependent oxidoreductase J8Z27_03285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_03285 PF03466 LysR substrate binding domain J8Z27_03290 PF07885 Ion channel J8Z27_03300 PF00072 Response regulator receiver domain J8Z27_03300 PF01584 CheW-like domain J8Z27_03305 PF01553 Acyltransferase J8Z27_03310 PF00082 Subtilase family J8Z27_03310 PF05922 Peptidase inhibitor I9 J8Z27_03320 PF00696 Amino acid kinase family J8Z27_03320 PF13840 ACT domain J8Z27_03325 PF00563 EAL domain J8Z27_03325 PF00360 Phytochrome region J8Z27_03325 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_03325 PF01590 GAF domain J8Z27_03330 PF07694 5TMR of 5TMR-LYT J8Z27_03330 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_03340 PF00571 CBS domain J8Z27_03340 PF01769 Divalent cation transporter J8Z27_03340 PF03448 MgtE intracellular N domain J8Z27_03345 PF18030 RimK PreATP-grasp domain J8Z27_03345 PF08443 RimK-like ATP-grasp domain J8Z27_03350 PF18030 RimK PreATP-grasp domain J8Z27_03350 PF08443 RimK-like ATP-grasp domain J8Z27_03365 PF01668 SmpB protein J8Z27_03370 PF03364 Polyketide cyclase / dehydrase and lipid transport J8Z27_03375 PF03658 RnfH family Ubiquitin J8Z27_03380 PF04355 SmpA / OmlA family J8Z27_03385 PF02463 RecF/RecN/SMC N terminal domain J8Z27_03390 PF01513 ATP-NAD kinase J8Z27_03395 PF01025 GrpE J8Z27_03400 PF00375 Sodium:dicarboxylate symporter family J8Z27_03405 PF00012 Hsp70 protein J8Z27_03410 PF00684 DnaJ central domain J8Z27_03410 PF01556 DnaJ C terminal domain J8Z27_03410 PF00226 DnaJ domain J8Z27_03440 PF03806 AbgT putative transporter family J8Z27_03445 PF14437 MafB19-like deaminase J8Z27_03450 PF01464 Transglycosylase SLT domain J8Z27_03450 PF00497 Bacterial extracellular solute-binding proteins, family 3 J8Z27_03455 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain J8Z27_03455 PF02769 AIR synthase related protein, C-terminal domain J8Z27_03455 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal J8Z27_03470 PF06786 Uncharacterised protein family (UPF0253) J8Z27_03480 PF00551 Formyl transferase J8Z27_03485 PF02769 AIR synthase related protein, C-terminal domain J8Z27_03485 PF00586 AIR synthase related protein, N-terminal domain J8Z27_03495 PF01479 S4 domain J8Z27_03495 PF00849 RNA pseudouridylate synthase J8Z27_03500 PF01713 Smr domain J8Z27_03520 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain J8Z27_03520 PF00728 Glycosyl hydrolase family 20, catalytic domain J8Z27_03520 PF02838 Glycosyl hydrolase family 20, domain 2 J8Z27_03520 PF03173 Putative carbohydrate binding domain J8Z27_03525 PF00854 POT family J8Z27_03530 PF00733 Asparagine synthase J8Z27_03530 PF13537 Glutamine amidotransferase domain J8Z27_03535 PF00999 Sodium/hydrogen exchanger family J8Z27_03535 PF02254 TrkA-N domain J8Z27_03540 PF01047 MarR family J8Z27_03540 PF00480 ROK family J8Z27_03545 PF01979 Amidohydrolase family J8Z27_03550 PF00367 phosphotransferase system, EIIB J8Z27_03550 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 J8Z27_03550 PF02378 Phosphotransferase system, EIIC J8Z27_03555 PF00749 tRNA synthetases class I (E and Q), catalytic domain J8Z27_03555 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain J8Z27_03560 PF01475 Ferric uptake regulator family J8Z27_03570 PF13609 Gram-negative porin J8Z27_03585 PF16200 C-terminal region of band_7 J8Z27_03585 PF01145 SPFH domain / Band 7 family J8Z27_03590 PF00085 Thioredoxin J8Z27_03595 PF00106 short chain dehydrogenase J8Z27_03600 PF01370 NAD dependent epimerase/dehydratase family J8Z27_03600 PF08338 Domain of unknown function (DUF1731) J8Z27_03605 PF07556 Protein of unknown function (DUF1538) J8Z27_03610 PF07556 Protein of unknown function (DUF1538) J8Z27_03625 PF12850 Calcineurin-like phosphoesterase superfamily domain J8Z27_03640 PF17323 Trans-membrane regulatory protein ToxS J8Z27_03645 PF00486 Transcriptional regulatory protein, C terminal J8Z27_03650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_03650 PF00183 Hsp90 protein J8Z27_03655 PF05191 Adenylate kinase, active site lid J8Z27_03660 PF00762 Ferrochelatase J8Z27_03665 PF01223 DNA/RNA non-specific endonuclease J8Z27_03670 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J8Z27_03670 PF01367 5'-3' exonuclease, C-terminal SAM fold J8Z27_03675 PF11892 Domain of unknown function (DUF3412) J8Z27_03675 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases J8Z27_03675 PF03641 Possible lysine decarboxylase J8Z27_03680 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_03690 PF14489 QueF-like protein J8Z27_03690 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term J8Z27_03695 PF07348 Syd protein (SUKH-2) J8Z27_03700 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) J8Z27_03715 PF07687 Peptidase dimerisation domain J8Z27_03715 PF01546 Peptidase family M20/M25/M40 J8Z27_03720 PF03960 ArsC family J8Z27_03745 PF02335 Cytochrome c552 J8Z27_03755 PF00037 4Fe-4S binding domain J8Z27_03755 PF13247 4Fe-4S dicluster domain J8Z27_03760 PF03916 Polysulphide reductase, NrfD J8Z27_03765 PF01578 Cytochrome C assembly protein J8Z27_03765 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal J8Z27_03770 PF08534 Redoxin J8Z27_03775 PF03918 Cytochrome C biogenesis protein J8Z27_03780 PF11143 Protein of unknown function (DUF2919) J8Z27_03785 PF04261 Dyp-type peroxidase family J8Z27_03790 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family J8Z27_03800 PF00579 tRNA synthetases class I (W and Y) J8Z27_03805 PF01551 Peptidase family M23 J8Z27_03805 PF01476 LysM domain J8Z27_03805 PF08525 Opacity-associated protein A N-terminal motif J8Z27_03810 PF00700 Bacterial flagellin C-terminal helical region J8Z27_03810 PF07196 Flagellin hook IN motif J8Z27_03810 PF00669 Bacterial flagellin N-terminal helical region J8Z27_03815 PF00700 Bacterial flagellin C-terminal helical region J8Z27_03815 PF07196 Flagellin hook IN motif J8Z27_03815 PF00669 Bacterial flagellin N-terminal helical region J8Z27_03820 PF00700 Bacterial flagellin C-terminal helical region J8Z27_03820 PF00669 Bacterial flagellin N-terminal helical region J8Z27_03820 PF07196 Flagellin hook IN motif J8Z27_03825 PF03646 FlaG protein J8Z27_03830 PF07196 Flagellin hook IN motif J8Z27_03830 PF02465 Flagellar hook-associated protein 2 N-terminus J8Z27_03830 PF07195 Flagellar hook-associated protein 2 C-terminus J8Z27_03840 PF02561 Flagellar protein FliS J8Z27_03845 PF06490 Flagellar regulatory protein FleQ J8Z27_03845 PF02954 Bacterial regulatory protein, Fis family J8Z27_03845 PF00158 Sigma-54 interaction domain J8Z27_03850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_03850 PF00512 His Kinase A (phospho-acceptor) domain J8Z27_03850 PF13188 PAS domain J8Z27_03855 PF00072 Response regulator receiver domain J8Z27_03855 PF00158 Sigma-54 interaction domain J8Z27_03855 PF02954 Bacterial regulatory protein, Fis family J8Z27_03860 PF02049 Flagellar hook-basal body complex protein FliE J8Z27_03865 PF08345 Flagellar M-ring protein C-terminal J8Z27_03865 PF01514 Secretory protein of YscJ/FliF family J8Z27_03870 PF14841 FliG middle domain J8Z27_03870 PF01706 FliG C-terminal domain J8Z27_03870 PF14842 FliG N-terminal domain J8Z27_03880 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J8Z27_03880 PF18269 T3SS EscN ATPase C-terminal domain J8Z27_03900 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J8Z27_03900 PF02154 Flagellar motor switch protein FliM J8Z27_03905 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J8Z27_03910 PF04347 Flagellar biosynthesis protein, FliO J8Z27_03915 PF00813 FliP family J8Z27_03920 PF01313 Bacterial export proteins, family 3 J8Z27_03925 PF01311 Bacterial export proteins, family 1 J8Z27_03930 PF01312 FlhB HrpN YscU SpaS Family J8Z27_03935 PF01713 Smr domain J8Z27_03940 PF05175 Methyltransferase small domain J8Z27_03945 PF01264 Chorismate synthase J8Z27_03955 PF03458 UPF0126 domain J8Z27_03960 PF04315 Elongation factor P hydroxylase J8Z27_03975 PF08891 YfcL protein J8Z27_03980 PF01266 FAD dependent oxidoreductase J8Z27_03980 PF05430 S-adenosyl-L-methionine-dependent methyltransferase J8Z27_03985 PF00109 Beta-ketoacyl synthase, N-terminal domain J8Z27_03985 PF02801 Beta-ketoacyl synthase, C-terminal domain J8Z27_03990 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J8Z27_03990 PF11890 Domain of unknown function (DUF3410) J8Z27_03990 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J8Z27_03995 PF01118 Semialdehyde dehydrogenase, NAD binding domain J8Z27_03995 PF02774 Semialdehyde dehydrogenase, dimerisation domain J8Z27_04005 PF01416 tRNA pseudouridine synthase J8Z27_04010 PF01039 Carboxyl transferase domain J8Z27_04010 PF17848 Acetyl-coA carboxylase zinc finger domain J8Z27_04015 PF02875 Mur ligase family, glutamate ligase domain J8Z27_04015 PF08245 Mur ligase middle domain J8Z27_04020 PF05036 Sporulation related domain J8Z27_04025 PF02674 Colicin V production protein J8Z27_04030 PF00156 Phosphoribosyl transferase domain J8Z27_04035 PF00950 ABC 3 transport family J8Z27_04040 PF00005 ABC transporter J8Z27_04045 PF01297 Zinc-uptake complex component A periplasmic J8Z27_04050 PF02311 AraC-like ligand binding domain J8Z27_04050 PF12833 Helix-turn-helix domain J8Z27_04055 PF04023 FeoA domain J8Z27_04060 PF07664 Ferrous iron transport protein B C terminus J8Z27_04060 PF02421 Ferrous iron transport protein B J8Z27_04060 PF07670 Nucleoside recognition J8Z27_04075 PF03485 Arginyl tRNA synthetase N terminal domain J8Z27_04075 PF05746 DALR anticodon binding domain J8Z27_04075 PF00750 tRNA synthetases class I (R) J8Z27_04080 PF06185 YecM protein J8Z27_04085 PF05193 Peptidase M16 inactive domain J8Z27_04085 PF00675 Insulinase (Peptidase family M16) J8Z27_04090 PF00300 Histidine phosphatase superfamily (branch 1) J8Z27_04095 PF00771 FHIPEP family J8Z27_04100 PF00448 SRP54-type protein, GTPase domain J8Z27_04105 PF10609 NUBPL iron-transfer P-loop NTPase J8Z27_04110 PF04542 Sigma-70 region 2 J8Z27_04110 PF04539 Sigma-70 region 3 J8Z27_04110 PF04545 Sigma-70, region 4 J8Z27_04115 PF00072 Response regulator receiver domain J8Z27_04120 PF04344 Chemotaxis phosphatase, CheZ J8Z27_04125 PF00072 Response regulator receiver domain J8Z27_04125 PF01627 Hpt domain J8Z27_04125 PF01584 CheW-like domain J8Z27_04125 PF02895 Signal transducing histidine kinase, homodimeric domain J8Z27_04125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_04130 PF01339 CheB methylesterase J8Z27_04130 PF00072 Response regulator receiver domain J8Z27_04135 PF13614 AAA domain J8Z27_04145 PF01584 CheW-like domain J8Z27_04155 PF00005 ABC transporter J8Z27_04160 PF03379 CcmB protein J8Z27_04165 PF01578 Cytochrome C assembly protein J8Z27_04170 PF04995 Heme exporter protein D (CcmD) J8Z27_04175 PF03100 CcmE J8Z27_04180 PF01578 Cytochrome C assembly protein J8Z27_04180 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal J8Z27_04185 PF08534 Redoxin J8Z27_04190 PF03918 Cytochrome C biogenesis protein J8Z27_04195 PF03918 Cytochrome C biogenesis protein J8Z27_04200 PF04333 MlaA lipoprotein J8Z27_04205 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J8Z27_04210 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J8Z27_04220 PF04542 Sigma-70 region 2 J8Z27_04220 PF08281 Sigma-70, region 4 J8Z27_04225 PF02803 Thiolase, C-terminal domain J8Z27_04225 PF00108 Thiolase, N-terminal domain J8Z27_04230 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J8Z27_04230 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J8Z27_04230 PF00378 Enoyl-CoA hydratase/isomerase J8Z27_04235 PF00881 Nitroreductase family J8Z27_04240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_04240 PF03466 LysR substrate binding domain J8Z27_04245 PF00072 Response regulator receiver domain J8Z27_04250 PF04304 Protein of unknown function (DUF454) J8Z27_04255 PF00156 Phosphoribosyl transferase domain J8Z27_04260 PF12169 DNA polymerase III subunits gamma and tau domain III J8Z27_04260 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding J8Z27_04260 PF12170 DNA polymerase III tau subunit V interacting with alpha J8Z27_04265 PF02575 YbaB/EbfC DNA-binding family J8Z27_04270 PF02132 RecR protein J8Z27_04270 PF13662 Toprim domain J8Z27_04275 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain J8Z27_04275 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain J8Z27_04290 PF00072 Response regulator receiver domain J8Z27_04290 PF00486 Transcriptional regulatory protein, C terminal J8Z27_04295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_04295 PF00512 His Kinase A (phospho-acceptor) domain J8Z27_04295 PF00672 HAMP domain J8Z27_04300 PF01547 Bacterial extracellular solute-binding protein J8Z27_04305 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_04310 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_04315 PF00005 ABC transporter J8Z27_04315 PF17912 MalK OB fold domain J8Z27_04315 PF03459 TOBE domain J8Z27_04320 PF03480 Bacterial extracellular solute-binding protein, family 7 J8Z27_04325 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component J8Z27_04330 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J8Z27_04340 PF00158 Sigma-54 interaction domain J8Z27_04340 PF02954 Bacterial regulatory protein, Fis family J8Z27_04340 PF00072 Response regulator receiver domain J8Z27_04345 PF02743 Cache domain J8Z27_04345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_04345 PF00512 His Kinase A (phospho-acceptor) domain J8Z27_04350 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J8Z27_04350 PF05698 Bacterial trigger factor protein (TF) C-terminus J8Z27_04350 PF05697 Bacterial trigger factor protein (TF) J8Z27_04355 PF00574 Clp protease J8Z27_04360 PF07724 AAA domain (Cdc48 subfamily) J8Z27_04360 PF06689 ClpX C4-type zinc finger J8Z27_04360 PF10431 C-terminal, D2-small domain, of ClpB protein J8Z27_04365 PF00004 ATPase family associated with various cellular activities (AAA) J8Z27_04365 PF05362 Lon protease (S16) C-terminal proteolytic domain J8Z27_04365 PF02190 ATP-dependent protease La (LON) substrate-binding domain J8Z27_04370 PF00216 Bacterial DNA-binding protein J8Z27_04375 PF13145 PPIC-type PPIASE domain J8Z27_04385 PF02224 Cytidylate kinase J8Z27_04390 PF00575 S1 RNA binding domain J8Z27_04395 PF00216 Bacterial DNA-binding protein J8Z27_04400 PF06305 Lipopolysaccharide assembly protein A domain J8Z27_04405 PF18073 Rubredoxin metal binding domain J8Z27_04410 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family J8Z27_04415 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) J8Z27_04425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_04425 PF03466 LysR substrate binding domain J8Z27_04440 PF02653 Branched-chain amino acid transport system / permease component J8Z27_04445 PF00005 ABC transporter J8Z27_04450 PF01207 Dihydrouridine synthase (Dus) J8Z27_04455 PF02810 SEC-C motif J8Z27_04455 PF01043 SecA preprotein cross-linking domain J8Z27_04455 PF07516 SecA Wing and Scaffold domain J8Z27_04455 PF07517 SecA DEAD-like domain J8Z27_04460 PF03548 Outer membrane lipoprotein carrier protein LolA J8Z27_04465 PF12002 MgsA AAA+ ATPase C terminal J8Z27_04465 PF16193 AAA C-terminal domain J8Z27_04465 PF00004 ATPase family associated with various cellular activities (AAA) J8Z27_04470 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J8Z27_04470 PF02403 Seryl-tRNA synthetase N-terminal domain J8Z27_04475 PF00710 Asparaginase, N-terminal J8Z27_04475 PF17763 Glutaminase/Asparaginase C-terminal domain J8Z27_04480 PF01343 Peptidase family S49 J8Z27_04485 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J8Z27_04485 PF07992 Pyridine nucleotide-disulphide oxidoreductase J8Z27_04490 PF01842 ACT domain J8Z27_04490 PF00551 Formyl transferase J8Z27_04500 PF04851 Type III restriction enzyme, res subunit J8Z27_04500 PF13307 Helicase C-terminal domain J8Z27_04505 PF00814 Glycoprotease family J8Z27_04520 PF00561 alpha/beta hydrolase fold J8Z27_04525 PF13193 AMP-binding enzyme C-terminal domain J8Z27_04525 PF00501 AMP-binding enzyme J8Z27_04530 PF01612 3'-5' exonuclease J8Z27_04530 PF00570 HRDC domain J8Z27_04535 PF00916 Sulfate permease family J8Z27_04535 PF01740 STAS domain J8Z27_04540 PF10150 Ribonuclease E/G family J8Z27_04540 PF00575 S1 RNA binding domain J8Z27_04540 PF12111 Polyribonucleotide phosphorylase C terminal J8Z27_04545 PF00849 RNA pseudouridylate synthase J8Z27_04545 PF01479 S4 domain J8Z27_04550 PF02545 Maf-like protein J8Z27_04555 PF02620 Large ribosomal RNA subunit accumulation protein YceD J8Z27_04560 PF01783 Ribosomal L32p protein family J8Z27_04565 PF02504 Fatty acid synthesis protein J8Z27_04570 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J8Z27_04570 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J8Z27_04575 PF00698 Acyl transferase domain J8Z27_04585 PF00550 Phosphopantetheine attachment site J8Z27_04590 PF02801 Beta-ketoacyl synthase, C-terminal domain J8Z27_04590 PF00109 Beta-ketoacyl synthase, N-terminal domain J8Z27_04595 PF01063 Amino-transferase class IV J8Z27_04600 PF02618 YceG-like family J8Z27_04605 PF02223 Thymidylate kinase J8Z27_04610 PF09115 DNA polymerase III, delta subunit, C terminal J8Z27_04615 PF01026 TatD related DNase J8Z27_04620 PF02378 Phosphotransferase system, EIIC J8Z27_04620 PF00367 phosphotransferase system, EIIB J8Z27_04635 PF00209 Sodium:neurotransmitter symporter family J8Z27_04650 PF01734 Patatin-like phospholipase J8Z27_04655 PF13460 NAD(P)H-binding J8Z27_04655 PF11066 Protein of unknown function (DUF2867) J8Z27_04675 PF02075 Crossover junction endodeoxyribonuclease RuvC J8Z27_04680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J8Z27_04680 PF00672 HAMP domain J8Z27_04680 PF02203 Tar ligand binding domain homologue J8Z27_04685 PF01330 RuvA N terminal domain J8Z27_04685 PF07499 RuvA, C-terminal domain J8Z27_04690 PF05491 RuvB C-terminal winged helix domain J8Z27_04690 PF17864 RuvB AAA lid domain J8Z27_04690 PF05496 Holliday junction DNA helicase RuvB P-loop domain J8Z27_04695 PF01654 Cytochrome bd terminal oxidase subunit I J8Z27_04700 PF02322 Cytochrome bd terminal oxidase subunit II J8Z27_04705 PF08173 Membrane bound YbgT-like protein J8Z27_04715 PF03061 Thioesterase superfamily J8Z27_04720 PF01618 MotA/TolQ/ExbB proton channel family J8Z27_04725 PF02472 Biopolymer transport protein ExbD/TolR J8Z27_04735 PF04052 TolB amino-terminal domain J8Z27_04735 PF07676 WD40-like Beta Propeller Repeat J8Z27_04740 PF00691 OmpA family J8Z27_04745 PF16331 TolA binding protein trimerisation J8Z27_04745 PF13174 Tetratricopeptide repeat J8Z27_04750 PF02445 Quinolinate synthetase A protein J8Z27_04765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_04765 PF00512 His Kinase A (phospho-acceptor) domain J8Z27_04765 PF09308 LuxQ, periplasmic J8Z27_04765 PF00072 Response regulator receiver domain J8Z27_04770 PF06610 L-alanine exporter J8Z27_04780 PF07728 AAA domain (dynein-related subfamily) J8Z27_04780 PF12102 Domain of unknown function (DUF3578) J8Z27_04800 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J8Z27_04805 PF01161 Phosphatidylethanolamine-binding protein J8Z27_04815 PF01238 Phosphomannose isomerase type I J8Z27_04820 PF00480 ROK family J8Z27_04835 PF16295 Tetracyclin repressor-like, C-terminal domain J8Z27_04835 PF00440 Bacterial regulatory proteins, tetR family J8Z27_04840 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J8Z27_04840 PF02770 Acyl-CoA dehydrogenase, middle domain J8Z27_04840 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J8Z27_04840 PF09317 Domain of unknown function (DUF1974) J8Z27_04845 PF12241 Trans-2-enoyl-CoA reductase catalytic region J8Z27_04845 PF07055 Enoyl reductase FAD binding domain J8Z27_04845 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase J8Z27_04855 PF03372 Endonuclease/Exonuclease/phosphatase family J8Z27_04860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J8Z27_04860 PF00672 HAMP domain J8Z27_04865 PF08007 Cupin superfamily protein J8Z27_04870 PF10689 Protein of unknown function (DUF2496) J8Z27_04880 PF01925 Sulfite exporter TauE/SafE J8Z27_04885 PF06733 DEAD_2 J8Z27_04885 PF13307 Helicase C-terminal domain J8Z27_04895 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) J8Z27_04900 PF00202 Aminotransferase class-III J8Z27_04905 PF06968 Biotin and Thiamin Synthesis associated domain J8Z27_04905 PF04055 Radical SAM superfamily J8Z27_04910 PF00155 Aminotransferase class I and II J8Z27_04915 PF12697 Alpha/beta hydrolase family J8Z27_04915 PF08241 Methyltransferase domain J8Z27_04930 PF01435 Peptidase family M48 J8Z27_04965 PF16036 Chalcone isomerase-like J8Z27_04975 PF00206 Lyase J8Z27_04975 PF08328 Adenylosuccinate lyase C-terminal J8Z27_04980 PF04356 Protein of unknown function (DUF489) J8Z27_04995 PF00294 pfkB family carbohydrate kinase J8Z27_05000 PF00816 H-NS histone family J8Z27_05005 PF03553 Na+/H+ antiporter family J8Z27_05010 PF01634 ATP phosphoribosyltransferase J8Z27_05010 PF08029 HisG, C-terminal domain J8Z27_05015 PF00815 Histidinol dehydrogenase J8Z27_05020 PF00155 Aminotransferase class I and II J8Z27_05025 PF00475 Imidazoleglycerol-phosphate dehydratase J8Z27_05025 PF08645 Polynucleotide kinase 3 phosphatase J8Z27_05030 PF00117 Glutamine amidotransferase class-I J8Z27_05035 PF00977 Histidine biosynthesis protein J8Z27_05040 PF00977 Histidine biosynthesis protein J8Z27_05045 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase J8Z27_05045 PF01502 Phosphoribosyl-AMP cyclohydrolase J8Z27_05050 PF00563 EAL domain J8Z27_05050 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_05050 PF13426 PAS domain J8Z27_05055 PF09456 RcsC Alpha-Beta-Loop (ABL) J8Z27_05055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_05055 PF00512 His Kinase A (phospho-acceptor) domain J8Z27_05055 PF00072 Response regulator receiver domain J8Z27_05065 PF00072 Response regulator receiver domain J8Z27_05075 PF01368 DHH family J8Z27_05075 PF02833 DHHA2 domain J8Z27_05085 PF00005 ABC transporter J8Z27_05090 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J8Z27_05090 PF00005 ABC transporter J8Z27_05095 PF12911 N-terminal TM domain of oligopeptide transport permease C J8Z27_05095 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_05100 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_05105 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J8Z27_05110 PF02954 Bacterial regulatory protein, Fis family J8Z27_05110 PF00158 Sigma-54 interaction domain J8Z27_05115 PF04012 PspA/IM30 family J8Z27_05120 PF06667 Phage shock protein B J8Z27_05135 PF13533 Biotin-lipoyl like J8Z27_05140 PF00873 AcrB/AcrD/AcrF family J8Z27_05145 PF03352 Methyladenine glycosylase J8Z27_05150 PF03280 Proteobacterial lipase chaperone protein J8Z27_05155 PF00561 alpha/beta hydrolase fold J8Z27_05160 PF01053 Cys/Met metabolism PLP-dependent enzyme J8Z27_05165 PF13091 PLD-like domain J8Z27_05165 PF13396 Phospholipase_D-nuclease N-terminal J8Z27_05170 PF00209 Sodium:neurotransmitter symporter family J8Z27_05175 PF00849 RNA pseudouridylate synthase J8Z27_05180 PF10672 S-adenosylmethionine-dependent methyltransferase J8Z27_05180 PF17785 PUA-like domain J8Z27_05190 PF01066 CDP-alcohol phosphatidyltransferase J8Z27_05195 PF00005 ABC transporter J8Z27_05200 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_05205 PF13416 Bacterial extracellular solute-binding protein J8Z27_05215 PF06945 Protein of unknown function (DUF1289) J8Z27_05230 PF03795 YCII-related domain J8Z27_05235 PF03061 Thioesterase superfamily J8Z27_05240 PF04279 Intracellular septation protein A J8Z27_05250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_05250 PF00072 Response regulator receiver domain J8Z27_05255 PF00072 Response regulator receiver domain J8Z27_05255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_05260 PF17327 Acyl homoserine lactone synthase J8Z27_05265 PF00216 Bacterial DNA-binding protein J8Z27_05270 PF04269 Protein of unknown function, DUF440 J8Z27_05275 PF01132 Elongation factor P (EF-P) OB domain J8Z27_05275 PF09285 Elongation factor P, C-terminal J8Z27_05275 PF08207 Elongation factor P (EF-P) KOW-like domain J8Z27_05285 PF00136 DNA polymerase family B J8Z27_05285 PF03104 DNA polymerase family B, exonuclease domain J8Z27_05300 PF00196 Bacterial regulatory proteins, luxR family J8Z27_05300 PF00072 Response regulator receiver domain J8Z27_05305 PF01541 GIY-YIG catalytic domain J8Z27_05305 PF02151 UvrB/uvrC motif J8Z27_05305 PF08459 UvrC Helix-hairpin-helix N-terminal J8Z27_05310 PF01066 CDP-alcohol phosphatidyltransferase J8Z27_05335 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J8Z27_05345 PF00266 Aminotransferase class-V J8Z27_05350 PF12729 Four helix bundle sensory module for signal transduction J8Z27_05350 PF00672 HAMP domain J8Z27_05350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J8Z27_05355 PF08497 Radical SAM N-terminal J8Z27_05355 PF04055 Radical SAM superfamily J8Z27_05355 PF11842 Domain of unknown function (DUF3362) J8Z27_05360 PF00563 EAL domain J8Z27_05360 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_05360 PF03707 Bacterial signalling protein N terminal repeat J8Z27_05375 PF03466 LysR substrate binding domain J8Z27_05375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_05380 PF01717 Cobalamin-independent synthase, Catalytic domain J8Z27_05380 PF08267 Cobalamin-independent synthase, N-terminal domain J8Z27_05390 PF02566 OsmC-like protein J8Z27_05395 PF01047 MarR family J8Z27_05405 PF03466 LysR substrate binding domain J8Z27_05405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_05430 PF02627 Carboxymuconolactone decarboxylase family J8Z27_05455 PF04116 Fatty acid hydroxylase superfamily J8Z27_05465 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term J8Z27_05465 PF12833 Helix-turn-helix domain J8Z27_05480 PF00012 Hsp70 protein J8Z27_05485 PF00012 Hsp70 protein J8Z27_05520 PF00270 DEAD/DEAH box helicase J8Z27_05520 PF11898 Domain of unknown function (DUF3418) J8Z27_05520 PF04408 Helicase associated domain (HA2) J8Z27_05520 PF00271 Helicase conserved C-terminal domain J8Z27_05520 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold J8Z27_05535 PF00290 Tryptophan synthase alpha chain J8Z27_05540 PF00291 Pyridoxal-phosphate dependent enzyme J8Z27_05545 PF00218 Indole-3-glycerol phosphate synthase J8Z27_05545 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase J8Z27_05550 PF02885 Glycosyl transferase family, helical bundle domain J8Z27_05550 PF00591 Glycosyl transferase family, a/b domain J8Z27_05555 PF00117 Glutamine amidotransferase class-I J8Z27_05560 PF04715 Anthranilate synthase component I, N terminal region J8Z27_05560 PF00425 chorismate binding enzyme J8Z27_05565 PF08056 Tryptophan operon leader peptide J8Z27_05570 PF02811 PHP domain J8Z27_05575 PF01300 Telomere recombination J8Z27_05585 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_05585 PF03707 Bacterial signalling protein N terminal repeat J8Z27_05585 PF00563 EAL domain J8Z27_05590 PF00849 RNA pseudouridylate synthase J8Z27_05590 PF01479 S4 domain J8Z27_05595 PF02567 Phenazine biosynthesis-like protein J8Z27_05600 PF00664 ABC transporter transmembrane region J8Z27_05600 PF00005 ABC transporter J8Z27_05605 PF00664 ABC transporter transmembrane region J8Z27_05605 PF00005 ABC transporter J8Z27_05610 PF07992 Pyridine nucleotide-disulphide oxidoreductase J8Z27_05620 PF00266 Aminotransferase class-V J8Z27_05625 PF00675 Insulinase (Peptidase family M16) J8Z27_05625 PF05193 Peptidase M16 inactive domain J8Z27_05635 PF02698 DUF218 domain J8Z27_05645 PF03949 Malic enzyme, NAD binding domain J8Z27_05645 PF00390 Malic enzyme, N-terminal domain J8Z27_05650 PF11898 Domain of unknown function (DUF3418) J8Z27_05650 PF04408 Helicase associated domain (HA2) J8Z27_05650 PF00271 Helicase conserved C-terminal domain J8Z27_05650 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold J8Z27_05650 PF00270 DEAD/DEAH box helicase J8Z27_05665 PF00155 Aminotransferase class I and II J8Z27_05670 PF00672 HAMP domain J8Z27_05670 PF01966 HD domain J8Z27_05680 PF00155 Aminotransferase class I and II J8Z27_05680 PF00392 Bacterial regulatory proteins, gntR family J8Z27_05690 PF00152 tRNA synthetases class II (D, K and N) J8Z27_05690 PF01336 OB-fold nucleic acid binding domain J8Z27_05695 PF12729 Four helix bundle sensory module for signal transduction J8Z27_05695 PF00672 HAMP domain J8Z27_05695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J8Z27_05700 PF01242 6-pyruvoyl tetrahydropterin synthase J8Z27_05705 PF03222 Tryptophan/tyrosine permease family J8Z27_05715 PF03313 Serine dehydratase alpha chain J8Z27_05715 PF03315 Serine dehydratase beta chain J8Z27_05720 PF03222 Tryptophan/tyrosine permease family J8Z27_05725 PF00293 NUDIX domain J8Z27_05735 PF00512 His Kinase A (phospho-acceptor) domain J8Z27_05735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_05735 PF09308 LuxQ, periplasmic J8Z27_05735 PF00072 Response regulator receiver domain J8Z27_05740 PF04715 Anthranilate synthase component I, N terminal region J8Z27_05740 PF00425 chorismate binding enzyme J8Z27_05755 PF04317 YcjX-like family, DUF463 J8Z27_05760 PF05128 Domain of unknown function (DUF697) J8Z27_05765 PF00158 Sigma-54 interaction domain J8Z27_05765 PF18024 Helix-turn-helix domain J8Z27_05770 PF13302 Acetyltransferase (GNAT) domain J8Z27_05790 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_05800 PF00925 GTP cyclohydrolase II J8Z27_05825 PF03734 L,D-transpeptidase catalytic domain J8Z27_05825 PF01471 Putative peptidoglycan binding domain J8Z27_05830 PF05951 Bacterial protein of unknown function (DUF882) J8Z27_05835 PF00753 Metallo-beta-lactamase superfamily J8Z27_05850 PF03480 Bacterial extracellular solute-binding protein, family 7 J8Z27_05860 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J8Z27_05865 PF17200 Single Cache domain 2 J8Z27_05865 PF07730 Histidine kinase J8Z27_05870 PF00072 Response regulator receiver domain J8Z27_05870 PF00196 Bacterial regulatory proteins, luxR family J8Z27_05880 PF00210 Ferritin-like domain J8Z27_05890 PF13520 Amino acid permease J8Z27_05895 PF00892 EamA-like transporter family J8Z27_05920 PF04229 GrpB protein J8Z27_05930 PF14552 Tautomerase enzyme J8Z27_06020 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J8Z27_06170 PF01042 Endoribonuclease L-PSP J8Z27_06270 PF09905 DNA-binding protein VF530 J8Z27_06480 PF01609 Transposase DDE domain J8Z27_06480 PF13006 Insertion element 4 transposase N-terminal J8Z27_06615 PF04229 GrpB protein J8Z27_06660 PF07007 Lysozyme inhibitor LprI J8Z27_06690 PF02567 Phenazine biosynthesis-like protein J8Z27_06745 PF01609 Transposase DDE domain J8Z27_06745 PF13006 Insertion element 4 transposase N-terminal J8Z27_06770 PF01810 LysE type translocator J8Z27_06775 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system J8Z27_06780 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system J8Z27_06800 PF02567 Phenazine biosynthesis-like protein J8Z27_06875 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J8Z27_06880 PF04209 homogentisate 1,2-dioxygenase J8Z27_06890 PF14497 Glutathione S-transferase, C-terminal domain J8Z27_06890 PF02798 Glutathione S-transferase, N-terminal domain J8Z27_06905 PF00691 OmpA family J8Z27_06905 PF13488 Glycine zipper J8Z27_06920 PF13183 4Fe-4S dicluster domain J8Z27_06920 PF01565 FAD binding domain J8Z27_06920 PF02913 FAD linked oxidases, C-terminal domain J8Z27_06925 PF04191 Phospholipid methyltransferase J8Z27_06935 PF00221 Aromatic amino acid lyase J8Z27_06940 PF17391 Urocanase N-terminal domain J8Z27_06940 PF17392 Urocanase C-terminal domain J8Z27_06940 PF01175 Urocanase Rossmann-like domain J8Z27_06945 PF00491 Arginase family J8Z27_06950 PF01979 Amidohydrolase family J8Z27_06955 PF07702 UTRA domain J8Z27_06955 PF00392 Bacterial regulatory proteins, gntR family J8Z27_06960 PF07070 SpoOM protein J8Z27_06980 PF05724 Thiopurine S-methyltransferase (TPMT) J8Z27_06985 PF02222 ATP-grasp domain J8Z27_06990 PF01966 HD domain J8Z27_06990 PF11871 Domain of unknown function (DUF3391) J8Z27_06995 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region J8Z27_06995 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J8Z27_07000 PF04172 LrgB-like family J8Z27_07005 PF03788 LrgA family J8Z27_07010 PF08411 Exonuclease C-terminal J8Z27_07010 PF00929 Exonuclease J8Z27_07015 PF00375 Sodium:dicarboxylate symporter family J8Z27_07020 PF13460 NAD(P)H-binding J8Z27_07025 PF01613 Flavin reductase like domain J8Z27_07030 PF02277 Phosphoribosyltransferase J8Z27_07035 PF02654 Cobalamin-5-phosphate synthase J8Z27_07050 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family J8Z27_07055 PF01032 FecCD transport family J8Z27_07060 PF00005 ABC transporter J8Z27_07070 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_07085 PF03466 LysR substrate binding domain J8Z27_07085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_07090 PF00005 ABC transporter J8Z27_07100 PF00512 His Kinase A (phospho-acceptor) domain J8Z27_07100 PF09308 LuxQ, periplasmic J8Z27_07100 PF00072 Response regulator receiver domain J8Z27_07100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_07110 PF01863 Protein of unknown function DUF45 J8Z27_07115 PF05971 RNA methyltransferase J8Z27_07130 PF00561 alpha/beta hydrolase fold J8Z27_07130 PF00364 Biotin-requiring enzyme J8Z27_07135 PF04204 Homoserine O-succinyltransferase J8Z27_07150 PF12792 CSS motif domain associated with EAL J8Z27_07150 PF00563 EAL domain J8Z27_07165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J8Z27_07175 PF01970 Tripartite tricarboxylate transporter TctA family J8Z27_07190 PF00069 Protein kinase domain J8Z27_07205 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE J8Z27_07235 PF00004 ATPase family associated with various cellular activities (AAA) J8Z27_07235 PF07724 AAA domain (Cdc48 subfamily) J8Z27_07235 PF17871 AAA lid domain J8Z27_07235 PF10431 C-terminal, D2-small domain, of ClpB protein J8Z27_07260 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath J8Z27_07290 PF06715 Gp5 C-terminal repeat (3 copies) J8Z27_07290 PF04717 Type VI secretion system, phage-baseplate injector J8Z27_07310 PF00285 Citrate synthase, C-terminal domain J8Z27_07315 PF00694 Aconitase C-terminal domain J8Z27_07315 PF00330 Aconitase family (aconitate hydratase) J8Z27_07320 PF04303 PrpF protein J8Z27_07325 PF16177 Acetyl-coenzyme A synthetase N-terminus J8Z27_07325 PF00501 AMP-binding enzyme J8Z27_07325 PF13193 AMP-binding enzyme C-terminal domain J8Z27_07345 PF04055 Radical SAM superfamily J8Z27_07350 PF06508 Queuosine biosynthesis protein QueC J8Z27_07365 PF05736 OprF membrane domain J8Z27_07365 PF00691 OmpA family J8Z27_07380 PF10672 S-adenosylmethionine-dependent methyltransferase J8Z27_07380 PF17785 PUA-like domain J8Z27_07385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J8Z27_07385 PF12729 Four helix bundle sensory module for signal transduction J8Z27_07385 PF00672 HAMP domain J8Z27_07390 PF00708 Acylphosphatase J8Z27_07395 PF04358 DsrC like protein J8Z27_07400 PF01027 Inhibitor of apoptosis-promoting Bax1 J8Z27_07405 PF00005 ABC transporter J8Z27_07410 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_07415 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_07420 PF00497 Bacterial extracellular solute-binding proteins, family 3 J8Z27_07425 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J8Z27_07425 PF14824 Sirohaem biosynthesis protein central J8Z27_07425 PF10414 Sirohaem synthase dimerisation region J8Z27_07430 PF04461 Protein of unknown function (DUF520) J8Z27_07435 PF00793 DAHP synthetase I family J8Z27_07440 PF00391 PEP-utilising enzyme, mobile domain J8Z27_07440 PF02896 PEP-utilising enzyme, TIM barrel domain J8Z27_07440 PF05524 PEP-utilising enzyme, N-terminal J8Z27_07460 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF J8Z27_07460 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF J8Z27_07460 PF01189 16S rRNA methyltransferase RsmB/F J8Z27_07465 PF02470 MlaD protein J8Z27_07470 PF04403 Paraquat-inducible protein A J8Z27_07475 PF00664 ABC transporter transmembrane region J8Z27_07475 PF00005 ABC transporter J8Z27_07480 PF13185 GAF domain J8Z27_07485 PF04352 ProQ/FINO family J8Z27_07485 PF17516 ProQ C-terminal domain J8Z27_07490 PF11818 C-terminal domain of tail specific protease (DUF3340) J8Z27_07490 PF00595 PDZ domain J8Z27_07490 PF03572 Peptidase family S41 J8Z27_07490 PF17804 Tail specific protease N-terminal domain J8Z27_07500 PF01433 Peptidase family M1 domain J8Z27_07500 PF17432 Domain of unknown function (DUF3458_C) ARM repeats J8Z27_07500 PF11940 Domain of unknown function (DUF3458) Ig-like fold J8Z27_07510 PF05088 Bacterial NAD-glutamate dehydrogenase J8Z27_07515 PF01180 Dihydroorotate dehydrogenase J8Z27_07520 PF07126 Cell-division protein ZapC J8Z27_07525 PF10672 S-adenosylmethionine-dependent methyltransferase J8Z27_07525 PF02926 THUMP domain J8Z27_07525 PF01170 Putative RNA methylase family UPF0020 J8Z27_07535 PF00005 ABC transporter J8Z27_07535 PF16326 ABC transporter C-terminal domain J8Z27_07535 PF12848 ABC transporter J8Z27_07545 PF04957 Ribosome modulation factor J8Z27_07550 PF07977 FabA-like domain J8Z27_07555 PF13654 AAA domain J8Z27_07555 PF05362 Lon protease (S16) C-terminal proteolytic domain J8Z27_07560 PF06303 MatP N-terminal domain J8Z27_07560 PF17414 MatP C-terminal ribbon-helix-helix domain J8Z27_07580 PF00652 Ricin-type beta-trefoil lectin domain J8Z27_07580 PF07968 Leukocidin/Hemolysin toxin family J8Z27_07595 PF04030 D-arabinono-1,4-lactone oxidase J8Z27_07595 PF01565 FAD binding domain J8Z27_07605 PF12729 Four helix bundle sensory module for signal transduction J8Z27_07605 PF00672 HAMP domain J8Z27_07605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J8Z27_07610 PF00842 Alanine racemase, C-terminal domain J8Z27_07610 PF01168 Alanine racemase, N-terminal domain J8Z27_07750 PF00753 Metallo-beta-lactamase superfamily J8Z27_07765 PF00115 Cytochrome C and Quinol oxidase polypeptide I J8Z27_07780 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J8Z27_07780 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP J8Z27_07790 PF00403 Heavy-metal-associated domain J8Z27_07805 PF13545 Crp-like helix-turn-helix domain J8Z27_07805 PF00027 Cyclic nucleotide-binding domain J8Z27_07810 PF00582 Universal stress protein family J8Z27_07815 PF01171 PP-loop family J8Z27_07835 PF00005 ABC transporter J8Z27_07835 PF08402 TOBE domain J8Z27_07840 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_07845 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_07850 PF13416 Bacterial extracellular solute-binding protein J8Z27_07855 PF13416 Bacterial extracellular solute-binding protein J8Z27_07860 PF17155 Gammaproteobacterial periplasmic sensor domain J8Z27_07860 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_07865 PF02146 Sir2 family J8Z27_07870 PF02743 Cache domain J8Z27_07870 PF00672 HAMP domain J8Z27_07870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J8Z27_07875 PF01551 Peptidase family M23 J8Z27_07880 PF03466 LysR substrate binding domain J8Z27_07880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_07895 PF03591 AzlC protein J8Z27_07925 PF00005 ABC transporter J8Z27_07925 PF12848 ABC transporter J8Z27_07935 PF04542 Sigma-70 region 2 J8Z27_07935 PF08281 Sigma-70, region 4 J8Z27_07945 PF12727 PBP superfamily domain J8Z27_07945 PF12728 Helix-turn-helix domain J8Z27_07950 PF12804 MobA-like NTP transferase domain J8Z27_07955 PF03205 Molybdopterin guanine dinucleotide synthesis protein B J8Z27_07985 PF00480 ROK family J8Z27_07990 PF03942 DTW domain J8Z27_08000 PF00672 HAMP domain J8Z27_08000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J8Z27_08000 PF17202 Single cache domain 3 J8Z27_08005 PF00877 NlpC/P60 family J8Z27_08015 PF03881 Fructosamine kinase J8Z27_08025 PF00677 Lumazine binding domain J8Z27_08030 PF01554 MatE J8Z27_08070 PF00072 Response regulator receiver domain J8Z27_08070 PF17149 Periplasmic sensor domain found in signal transduction proteins J8Z27_08070 PF00672 HAMP domain J8Z27_08070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_08070 PF00512 His Kinase A (phospho-acceptor) domain J8Z27_08070 PF01627 Hpt domain J8Z27_08075 PF00158 Sigma-54 interaction domain J8Z27_08075 PF00072 Response regulator receiver domain J8Z27_08075 PF02954 Bacterial regulatory protein, Fis family J8Z27_08085 PF00534 Glycosyl transferases group 1 J8Z27_08085 PF13439 Glycosyltransferase Family 4 J8Z27_08120 PF13439 Glycosyltransferase Family 4 J8Z27_08120 PF00534 Glycosyl transferases group 1 J8Z27_08130 PF02397 Bacterial sugar transferase J8Z27_08155 PF01420 Type I restriction modification DNA specificity domain J8Z27_08160 PF02384 N-6 DNA Methylase J8Z27_08165 PF04851 Type III restriction enzyme, res subunit J8Z27_08165 PF08463 EcoEI R protein C-terminal J8Z27_08165 PF00271 Helicase conserved C-terminal domain J8Z27_08165 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) J8Z27_08210 PF13340 Putative transposase of IS4/5 family (DUF4096) J8Z27_08215 PF01609 Transposase DDE domain J8Z27_08215 PF13006 Insertion element 4 transposase N-terminal J8Z27_08230 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) J8Z27_08240 PF07715 TonB-dependent Receptor Plug Domain J8Z27_08240 PF00593 TonB dependent receptor J8Z27_08245 PF13193 AMP-binding enzyme C-terminal domain J8Z27_08245 PF00550 Phosphopantetheine attachment site J8Z27_08245 PF00668 Condensation domain J8Z27_08245 PF00501 AMP-binding enzyme J8Z27_08250 PF00550 Phosphopantetheine attachment site J8Z27_08250 PF00668 Condensation domain J8Z27_08250 PF13193 AMP-binding enzyme C-terminal domain J8Z27_08250 PF00501 AMP-binding enzyme J8Z27_08255 PF03621 MbtH-like protein J8Z27_08260 PF00005 ABC transporter J8Z27_08265 PF01032 FecCD transport family J8Z27_08270 PF01497 Periplasmic binding protein J8Z27_08275 PF00005 ABC transporter J8Z27_08280 PF01648 4'-phosphopantetheinyl transferase superfamily J8Z27_08280 PF17837 4'-phosphopantetheinyl transferase N-terminal domain J8Z27_08285 PF02595 Glycerate kinase family J8Z27_08290 PF13556 PucR C-terminal helix-turn-helix domain J8Z27_08290 PF17853 GGDEF-like domain J8Z27_08290 PF05651 Putative sugar diacid recognition J8Z27_08295 PF03466 LysR substrate binding domain J8Z27_08295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_08305 PF01609 Transposase DDE domain J8Z27_08305 PF13006 Insertion element 4 transposase N-terminal J8Z27_08310 PF06629 MltA-interacting protein MipA J8Z27_08315 PF00672 HAMP domain J8Z27_08315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_08315 PF00512 His Kinase A (phospho-acceptor) domain J8Z27_08320 PF00072 Response regulator receiver domain J8Z27_08320 PF00486 Transcriptional regulatory protein, C terminal J8Z27_08335 PF10414 Sirohaem synthase dimerisation region J8Z27_08335 PF14824 Sirohaem biosynthesis protein central J8Z27_08335 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J8Z27_08340 PF01226 Formate/nitrite transporter J8Z27_08345 PF13806 Rieske-like [2Fe-2S] domain J8Z27_08350 PF04324 BFD-like [2Fe-2S] binding domain J8Z27_08350 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J8Z27_08350 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain J8Z27_08350 PF07992 Pyridine nucleotide-disulphide oxidoreductase J8Z27_08350 PF18267 Rubredoxin NAD+ reductase C-terminal domain J8Z27_08355 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_08355 PF08448 PAS fold J8Z27_08360 PF01546 Peptidase family M20/M25/M40 J8Z27_08360 PF07687 Peptidase dimerisation domain J8Z27_08385 PF13302 Acetyltransferase (GNAT) domain J8Z27_08390 PF13673 Acetyltransferase (GNAT) domain J8Z27_08435 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) J8Z27_08455 PF12431 Transcriptional regulator J8Z27_08455 PF00072 Response regulator receiver domain J8Z27_08460 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain J8Z27_08460 PF17203 Single cache domain 3 J8Z27_08460 PF00989 PAS fold J8Z27_08460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_08475 PF03544 Gram-negative bacterial TonB protein C-terminal J8Z27_08480 PF02472 Biopolymer transport protein ExbD/TolR J8Z27_08485 PF01618 MotA/TolQ/ExbB proton channel family J8Z27_08490 PF01618 MotA/TolQ/ExbB proton channel family J8Z27_08515 PF01259 SAICAR synthetase J8Z27_08525 PF04055 Radical SAM superfamily J8Z27_08530 PF11230 Protein of unknown function (DUF3029) J8Z27_08535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J8Z27_08535 PF00672 HAMP domain J8Z27_08540 PF03989 DNA gyrase C-terminal domain, beta-propeller J8Z27_08540 PF00521 DNA gyrase/topoisomerase IV, subunit A J8Z27_08550 PF03477 ATP cone domain J8Z27_08550 PF02867 Ribonucleotide reductase, barrel domain J8Z27_08550 PF00317 Ribonucleotide reductase, all-alpha domain J8Z27_08555 PF00268 Ribonucleotide reductase, small chain J8Z27_08560 PF00111 2Fe-2S iron-sulfur cluster binding domain J8Z27_08570 PF00994 Probable molybdopterin binding domain J8Z27_08585 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain J8Z27_08590 PF03435 Saccharopine dehydrogenase NADP binding domain J8Z27_08590 PF16653 Saccharopine dehydrogenase C-terminal domain J8Z27_08595 PF00202 Aminotransferase class-III J8Z27_08605 PF03422 Carbohydrate binding module (family 6) J8Z27_08605 PF02412 Thrombospondin type 3 repeat J8Z27_08610 PF06965 Na+/H+ antiporter 1 J8Z27_08620 PF12704 MacB-like periplasmic core domain J8Z27_08620 PF02687 FtsX-like permease family J8Z27_08625 PF00005 ABC transporter J8Z27_08630 PF01554 MatE J8Z27_08635 PF11066 Protein of unknown function (DUF2867) J8Z27_08635 PF13460 NAD(P)H-binding J8Z27_08645 PF07690 Major Facilitator Superfamily J8Z27_08650 PF00849 RNA pseudouridylate synthase J8Z27_08650 PF01479 S4 domain J8Z27_08655 PF00271 Helicase conserved C-terminal domain J8Z27_08655 PF04851 Type III restriction enzyme, res subunit J8Z27_08665 PF00072 Response regulator receiver domain J8Z27_08665 PF00486 Transcriptional regulatory protein, C terminal J8Z27_08670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_08695 PF00873 AcrB/AcrD/AcrF family J8Z27_08700 PF13533 Biotin-lipoyl like J8Z27_08715 PF00535 Glycosyl transferase family 2 J8Z27_08720 PF01386 Ribosomal L25p family J8Z27_08725 PF00717 Peptidase S24-like J8Z27_08730 PF13438 Domain of unknown function (DUF4113) J8Z27_08730 PF00817 impB/mucB/samB family J8Z27_08730 PF11799 impB/mucB/samB family C-terminal domain J8Z27_08735 PF00579 tRNA synthetases class I (W and Y) J8Z27_08765 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase J8Z27_08785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_08785 PF03466 LysR substrate binding domain J8Z27_08790 PF13533 Biotin-lipoyl like J8Z27_08795 PF07690 Major Facilitator Superfamily J8Z27_08815 PF01327 Polypeptide deformylase J8Z27_08820 PF00958 GMP synthase C terminal domain J8Z27_08820 PF03352 Methyladenine glycosylase J8Z27_08820 PF00117 Glutamine amidotransferase class-I J8Z27_08820 PF13302 Acetyltransferase (GNAT) domain J8Z27_08820 PF13673 Acetyltransferase (GNAT) domain J8Z27_08830 PF02264 LamB porin J8Z27_08835 PF08212 Lipocalin-like domain J8Z27_08845 PF03831 PhnA domain J8Z27_08845 PF08274 PhnA Zinc-Ribbon J8Z27_08860 PF13495 Phage integrase, N-terminal SAM-like domain J8Z27_08860 PF00589 Phage integrase family J8Z27_08870 PF03707 Bacterial signalling protein N terminal repeat J8Z27_08870 PF00563 EAL domain J8Z27_08870 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_08900 PF01235 Sodium:alanine symporter family J8Z27_08905 PF01810 LysE type translocator J8Z27_08910 PF02074 Carboxypeptidase Taq (M32) metallopeptidase J8Z27_08915 PF02581 Thiamine monophosphate synthase J8Z27_08930 PF02028 BCCT, betaine/carnitine/choline family transporter J8Z27_08940 PF00171 Aldehyde dehydrogenase family J8Z27_08950 PF03466 LysR substrate binding domain J8Z27_08950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_08955 PF00561 alpha/beta hydrolase fold J8Z27_08970 PF00815 Histidinol dehydrogenase J8Z27_08975 PF03328 HpcH/HpaI aldolase/citrate lyase family J8Z27_08980 PF00356 Bacterial regulatory proteins, lacI family J8Z27_08985 PF03480 Bacterial extracellular solute-binding protein, family 7 J8Z27_08995 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J8Z27_08995 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component J8Z27_09010 PF00474 Sodium:solute symporter family J8Z27_09015 PF00356 Bacterial regulatory proteins, lacI family J8Z27_09030 PF00313 'Cold-shock' DNA-binding domain J8Z27_09055 PF02321 Outer membrane efflux protein J8Z27_09060 PF14376 Haem-binding domain J8Z27_09060 PF00034 Cytochrome c J8Z27_09060 PF03150 Di-haem cytochrome c peroxidase J8Z27_09065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_09065 PF00512 His Kinase A (phospho-acceptor) domain J8Z27_09065 PF09308 LuxQ, periplasmic J8Z27_09065 PF00072 Response regulator receiver domain J8Z27_09075 PF00440 Bacterial regulatory proteins, tetR family J8Z27_09080 PF01565 FAD binding domain J8Z27_09080 PF09330 D-lactate dehydrogenase, membrane binding J8Z27_09085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_09085 PF03466 LysR substrate binding domain J8Z27_09090 PF01554 MatE J8Z27_09100 PF00356 Bacterial regulatory proteins, lacI family J8Z27_09100 PF13407 Periplasmic binding protein domain J8Z27_09105 PF00294 pfkB family carbohydrate kinase J8Z27_09145 PF03483 B3/4 domain J8Z27_09145 PF03484 tRNA synthetase B5 domain J8Z27_09145 PF03147 Ferredoxin-fold anticodon binding domain J8Z27_09145 PF01588 Putative tRNA binding domain J8Z27_09145 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain J8Z27_09150 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain J8Z27_09150 PF01409 tRNA synthetases class II core domain (F) J8Z27_09175 PF07995 Glucose / Sorbosone dehydrogenase J8Z27_09185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_09185 PF00512 His Kinase A (phospho-acceptor) domain J8Z27_09200 PF04994 TfoX C-terminal domain J8Z27_09200 PF04993 TfoX N-terminal domain J8Z27_09210 PF03956 Lysine exporter LysO J8Z27_09220 PF00282 Pyridoxal-dependent decarboxylase conserved domain J8Z27_09225 PF01418 Helix-turn-helix domain, rpiR family J8Z27_09225 PF01380 SIS domain J8Z27_09230 PF00171 Aldehyde dehydrogenase family J8Z27_09230 PF00465 Iron-containing alcohol dehydrogenase J8Z27_09235 PF00462 Glutaredoxin J8Z27_09240 PF06826 Predicted Permease Membrane Region J8Z27_09240 PF02080 TrkA-C domain J8Z27_09245 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_09250 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_09255 PF00497 Bacterial extracellular solute-binding proteins, family 3 J8Z27_09260 PF00005 ABC transporter J8Z27_09270 PF02901 Pyruvate formate lyase-like J8Z27_09270 PF01228 Glycine radical J8Z27_09280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J8Z27_09280 PF00672 HAMP domain J8Z27_09285 PF04055 Radical SAM superfamily J8Z27_09295 PF03887 YfbU domain J8Z27_09300 PF06798 PrkA serine protein kinase C-terminal domain J8Z27_09300 PF08298 PrkA AAA domain J8Z27_09305 PF04285 Protein of unknown function (DUF444) J8Z27_09310 PF04293 SpoVR like protein J8Z27_09315 PF02348 Cytidylyltransferase J8Z27_09320 PF03966 Trm112p-like protein J8Z27_09325 PF02606 Tetraacyldisaccharide-1-P 4'-kinase J8Z27_09330 PF00005 ABC transporter J8Z27_09330 PF00664 ABC transporter transmembrane region J8Z27_09335 PF00753 Metallo-beta-lactamase superfamily J8Z27_09335 PF03772 Competence protein J8Z27_09345 PF02687 FtsX-like permease family J8Z27_09345 PF12704 MacB-like periplasmic core domain J8Z27_09350 PF00005 ABC transporter J8Z27_09355 PF12704 MacB-like periplasmic core domain J8Z27_09355 PF02687 FtsX-like permease family J8Z27_09365 PF00271 Helicase conserved C-terminal domain J8Z27_09365 PF00270 DEAD/DEAH box helicase J8Z27_09365 PF17757 UvrB interaction domain J8Z27_09365 PF02559 CarD-like/TRCF domain J8Z27_09365 PF03461 TRCF domain J8Z27_09380 PF07992 Pyridine nucleotide-disulphide oxidoreductase J8Z27_09385 PF05728 Uncharacterised protein family (UPF0227) J8Z27_09395 PF08139 Prokaryotic membrane lipoprotein lipid attachment site J8Z27_09395 PF13036 Peptidoglycan-synthase activator LpoB J8Z27_09410 PF01230 HIT domain J8Z27_09415 PF00672 HAMP domain J8Z27_09415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J8Z27_09425 PF07840 FadR C-terminal domain J8Z27_09425 PF00392 Bacterial regulatory proteins, gntR family J8Z27_09430 PF06450 Bacterial Na+/H+ antiporter B (NhaB) J8Z27_09435 PF02600 Disulfide bond formation protein DsbB J8Z27_09440 PF13491 4TM region of DNA translocase FtsK/SpoIIIE J8Z27_09440 PF17854 FtsK alpha domain J8Z27_09440 PF09397 Ftsk gamma domain J8Z27_09440 PF01580 FtsK/SpoIIIE family J8Z27_09445 PF01037 Lrp/AsnC ligand binding domain J8Z27_09450 PF01262 Alanine dehydrogenase/PNT, C-terminal domain J8Z27_09450 PF05222 Alanine dehydrogenase/PNT, N-terminal domain J8Z27_09455 PF04217 Protein of unknown function, DUF412 J8Z27_09460 PF00871 Acetokinase family J8Z27_09465 PF07085 DRTGG domain J8Z27_09465 PF01515 Phosphate acetyl/butaryl transferase J8Z27_09470 PF13409 Glutathione S-transferase, N-terminal domain J8Z27_09475 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J8Z27_09475 PF00005 ABC transporter J8Z27_09480 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J8Z27_09480 PF00005 ABC transporter J8Z27_09485 PF12911 N-terminal TM domain of oligopeptide transport permease C J8Z27_09485 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_09490 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_09495 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J8Z27_09505 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J8Z27_09515 PF02743 Cache domain J8Z27_09515 PF00672 HAMP domain J8Z27_09515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J8Z27_09520 PF04389 Peptidase family M28 J8Z27_09520 PF04151 Bacterial pre-peptidase C-terminal domain J8Z27_09525 PF00082 Subtilase family J8Z27_09525 PF04151 Bacterial pre-peptidase C-terminal domain J8Z27_09525 PF05922 Peptidase inhibitor I9 J8Z27_09530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J8Z27_09530 PF00672 HAMP domain J8Z27_09530 PF02743 Cache domain J8Z27_09555 PF12704 MacB-like periplasmic core domain J8Z27_09555 PF02687 FtsX-like permease family J8Z27_09555 PF00005 ABC transporter J8Z27_09560 PF02687 FtsX-like permease family J8Z27_09560 PF00005 ABC transporter J8Z27_09560 PF12704 MacB-like periplasmic core domain J8Z27_09565 PF12704 MacB-like periplasmic core domain J8Z27_09565 PF02687 FtsX-like permease family J8Z27_09575 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J8Z27_09580 PF03413 Peptidase propeptide and YPEB domain J8Z27_09580 PF04151 Bacterial pre-peptidase C-terminal domain J8Z27_09580 PF02868 Thermolysin metallopeptidase, alpha-helical domain J8Z27_09580 PF07504 Fungalysin/Thermolysin Propeptide Motif J8Z27_09580 PF01447 Thermolysin metallopeptidase, catalytic domain J8Z27_09590 PF00326 Prolyl oligopeptidase family J8Z27_09590 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain J8Z27_09605 PF00535 Glycosyl transferase family 2 J8Z27_09655 PF01544 CorA-like Mg2+ transporter protein J8Z27_09680 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_09690 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J8Z27_09695 PF09619 Type III secretion system lipoprotein chaperone (YscW) J8Z27_09705 PF01037 Lrp/AsnC ligand binding domain J8Z27_09705 PF13404 AsnC-type helix-turn-helix domain J8Z27_09710 PF00291 Pyridoxal-phosphate dependent enzyme J8Z27_09730 PF07690 Major Facilitator Superfamily J8Z27_09735 PF03601 Conserved hypothetical protein 698 J8Z27_09745 PF00501 AMP-binding enzyme J8Z27_09745 PF13193 AMP-binding enzyme C-terminal domain J8Z27_09750 PF13378 Enolase C-terminal domain-like J8Z27_09755 PF00378 Enoyl-CoA hydratase/isomerase J8Z27_09760 PF12697 Alpha/beta hydrolase family J8Z27_09765 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J8Z27_09765 PF16582 Middle domain of thiamine pyrophosphate J8Z27_09765 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J8Z27_09770 PF00425 chorismate binding enzyme J8Z27_09775 PF00155 Aminotransferase class I and II J8Z27_09785 PF13286 Phosphohydrolase-associated domain J8Z27_09785 PF01966 HD domain J8Z27_09790 PF00962 Adenosine/AMP deaminase J8Z27_09805 PF00271 Helicase conserved C-terminal domain J8Z27_09805 PF00270 DEAD/DEAH box helicase J8Z27_09810 PF13006 Insertion element 4 transposase N-terminal J8Z27_09810 PF01609 Transposase DDE domain J8Z27_09815 PF08496 Peptidase family S49 N-terminal J8Z27_09815 PF01343 Peptidase family S49 J8Z27_09820 PF00106 short chain dehydrogenase J8Z27_09825 PF00224 Pyruvate kinase, barrel domain J8Z27_09825 PF02887 Pyruvate kinase, alpha/beta domain J8Z27_09830 PF00480 ROK family J8Z27_09835 PF01584 CheW-like domain J8Z27_09835 PF00072 Response regulator receiver domain J8Z27_09840 PF02696 Uncharacterized ACR, YdiU/UPF0061 family J8Z27_09850 PF18364 Molybdopterin oxidoreductase N-terminal domain J8Z27_09850 PF00384 Molybdopterin oxidoreductase J8Z27_09850 PF01568 Molydopterin dinucleotide binding domain J8Z27_09855 PF03264 NapC/NirT cytochrome c family, N-terminal region J8Z27_09860 PF06796 Periplasmic nitrate reductase protein NapE J8Z27_09865 PF03649 Uncharacterised protein family (UPF0014) J8Z27_09875 PF01226 Formate/nitrite transporter J8Z27_09900 PF00004 ATPase family associated with various cellular activities (AAA) J8Z27_09900 PF07724 AAA domain (Cdc48 subfamily) J8Z27_09900 PF17871 AAA lid domain J8Z27_09900 PF02861 Clp amino terminal domain, pathogenicity island component J8Z27_09900 PF10431 C-terminal, D2-small domain, of ClpB protein J8Z27_09905 PF02617 ATP-dependent Clp protease adaptor protein ClpS J8Z27_09910 PF00313 'Cold-shock' DNA-binding domain J8Z27_09915 PF03971 Monomeric isocitrate dehydrogenase J8Z27_09920 PF00849 RNA pseudouridylate synthase J8Z27_09925 PF02938 GAD domain J8Z27_09925 PF00152 tRNA synthetases class II (D, K and N) J8Z27_09925 PF01336 OB-fold nucleic acid binding domain J8Z27_09930 PF01904 Protein of unknown function DUF72 J8Z27_09935 PF13649 Methyltransferase domain J8Z27_09940 PF08003 Protein of unknown function (DUF1698) J8Z27_09945 PF08443 RimK-like ATP-grasp domain J8Z27_09945 PF18030 RimK PreATP-grasp domain J8Z27_09960 PF16330 MukB hinge domain J8Z27_09960 PF04310 MukB N-terminal J8Z27_09965 PF04288 MukE-like family J8Z27_09970 PF03882 MukF winged-helix domain J8Z27_09970 PF17193 MukF C-terminal domain J8Z27_09970 PF17192 MukF middle domain J8Z27_09975 PF13847 Methyltransferase domain J8Z27_09980 PF02698 DUF218 domain J8Z27_09985 PF00072 Response regulator receiver domain J8Z27_09985 PF00486 Transcriptional regulatory protein, C terminal J8Z27_09990 PF02613 Nitrate reductase delta subunit J8Z27_09995 PF00356 Bacterial regulatory proteins, lacI family J8Z27_10000 PF04993 TfoX N-terminal domain J8Z27_10000 PF04994 TfoX C-terminal domain J8Z27_10005 PF01609 Transposase DDE domain J8Z27_10005 PF13006 Insertion element 4 transposase N-terminal J8Z27_10025 PF08323 Starch synthase catalytic domain J8Z27_10025 PF00534 Glycosyl transferases group 1 J8Z27_10030 PF00483 Nucleotidyl transferase J8Z27_10035 PF08272 Topoisomerase I zinc-ribbon-like J8Z27_10035 PF01396 Topoisomerase DNA binding C4 zinc finger J8Z27_10035 PF01751 Toprim domain J8Z27_10035 PF01131 DNA topoisomerase J8Z27_10040 PF10692 Protein of unknown function (DUF2498) J8Z27_10045 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J8Z27_10055 PF03588 Leucyl/phenylalanyl-tRNA protein transferase J8Z27_10060 PF04376 Arginine-tRNA-protein transferase, N terminus J8Z27_10060 PF04377 Arginine-tRNA-protein transferase, C terminus J8Z27_10065 PF01176 Translation initiation factor 1A / IF-1 J8Z27_10070 PF00265 Thymidine kinase J8Z27_10075 PF01406 tRNA synthetases class I (C) catalytic domain J8Z27_10075 PF09190 DALR domain J8Z27_10080 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J8Z27_10085 PF00149 Calcineurin-like phosphoesterase J8Z27_10090 PF00563 EAL domain J8Z27_10090 PF08668 HDOD domain J8Z27_10095 PF02810 SEC-C motif J8Z27_10100 PF07023 Protein of unknown function (DUF1315) J8Z27_10110 PF01641 SelR domain J8Z27_10115 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J8Z27_10115 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J8Z27_10120 PF01263 Aldose 1-epimerase J8Z27_10125 PF13847 Methyltransferase domain J8Z27_10140 PF00245 Alkaline phosphatase J8Z27_10145 PF03472 Autoinducer binding domain J8Z27_10145 PF00196 Bacterial regulatory proteins, luxR family J8Z27_10155 PF07690 Major Facilitator Superfamily J8Z27_10165 PF00970 Oxidoreductase FAD-binding domain J8Z27_10165 PF00175 Oxidoreductase NAD-binding domain J8Z27_10170 PF03692 Putative zinc- or iron-chelating domain J8Z27_10180 PF03692 Putative zinc- or iron-chelating domain J8Z27_10185 PF13406 Transglycosylase SLT domain J8Z27_10190 PF05166 YcgL domain J8Z27_10195 PF03775 Septum formation inhibitor MinC, C-terminal domain J8Z27_10195 PF05209 Septum formation inhibitor MinC, N-terminal domain J8Z27_10200 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J8Z27_10205 PF03776 Septum formation topological specificity factor MinE J8Z27_10210 PF00171 Aldehyde dehydrogenase family J8Z27_10210 PF00465 Iron-containing alcohol dehydrogenase J8Z27_10215 PF01914 MarC family integral membrane protein J8Z27_10220 PF00027 Cyclic nucleotide-binding domain J8Z27_10220 PF00520 Ion transport protein J8Z27_10225 PF01118 Semialdehyde dehydrogenase, NAD binding domain J8Z27_10225 PF02774 Semialdehyde dehydrogenase, dimerisation domain J8Z27_10230 PF03553 Na+/H+ antiporter family J8Z27_10235 PF00392 Bacterial regulatory proteins, gntR family J8Z27_10235 PF07702 UTRA domain J8Z27_10240 PF00367 phosphotransferase system, EIIB J8Z27_10240 PF02378 Phosphotransferase system, EIIC J8Z27_10245 PF08244 Glycosyl hydrolases family 32 C terminal J8Z27_10245 PF00251 Glycosyl hydrolases family 32 N-terminal domain J8Z27_10255 PF04245 37-kD nucleoid-associated bacterial protein J8Z27_10260 PF07208 Protein of unknown function (DUF1414) J8Z27_10265 PF00884 Sulfatase J8Z27_10265 PF11893 Domain of unknown function (DUF3413) J8Z27_10285 PF00293 NUDIX domain J8Z27_10285 PF13344 Haloacid dehalogenase-like hydrolase J8Z27_10290 PF00850 Histone deacetylase domain J8Z27_10295 PF00106 short chain dehydrogenase J8Z27_10300 PF01161 Phosphatidylethanolamine-binding protein J8Z27_10310 PF01751 Toprim domain J8Z27_10310 PF01131 DNA topoisomerase J8Z27_10315 PF00462 Glutaredoxin J8Z27_10320 PF02777 Iron/manganese superoxide dismutases, C-terminal domain J8Z27_10320 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain J8Z27_10335 PF01451 Low molecular weight phosphotyrosine protein phosphatase J8Z27_10340 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP J8Z27_10340 PF12557 Cob(I)alamin adenosyltransferase N terminal J8Z27_10360 PF16901 C-terminal domain of alpha-glycerophosphate oxidase J8Z27_10360 PF01266 FAD dependent oxidoreductase J8Z27_10370 PF01968 Hydantoinase/oxoprolinase J8Z27_10370 PF05378 Hydantoinase/oxoprolinase N-terminal region J8Z27_10380 PF17677 Glycosyl hydrolases family 38 C-terminal beta sandwich domain J8Z27_10380 PF09261 Alpha mannosidase middle domain J8Z27_10380 PF07748 Glycosyl hydrolases family 38 C-terminal domain J8Z27_10380 PF18438 Glycosyl hydrolases family 38 C-terminal domain 1 J8Z27_10380 PF01074 Glycosyl hydrolases family 38 N-terminal domain J8Z27_10385 PF00480 ROK family J8Z27_10390 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase J8Z27_10400 PF00480 ROK family J8Z27_10405 PF05170 AsmA family J8Z27_10410 PF00485 Phosphoribulokinase / Uridine kinase family J8Z27_10415 PF10609 NUBPL iron-transfer P-loop NTPase J8Z27_10420 PF09334 tRNA synthetases class I (M) J8Z27_10420 PF01588 Putative tRNA binding domain J8Z27_10430 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J8Z27_10430 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain J8Z27_10435 PF01048 Phosphorylase superfamily J8Z27_10440 PF00403 Heavy-metal-associated domain J8Z27_10445 PF01554 MatE J8Z27_10450 PF02272 DHHA1 domain J8Z27_10450 PF01368 DHH family J8Z27_10450 PF00571 CBS domain J8Z27_10450 PF01743 Poly A polymerase head domain J8Z27_10460 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_10465 PF02391 MoaE protein J8Z27_10470 PF02597 ThiS family J8Z27_10475 PF01967 MoaC family J8Z27_10480 PF00994 Probable molybdopterin binding domain J8Z27_10485 PF06463 Molybdenum Cofactor Synthesis C J8Z27_10485 PF04055 Radical SAM superfamily J8Z27_10490 PF01933 Uncharacterised protein family UPF0052 J8Z27_10495 PF01627 Hpt domain J8Z27_10500 PF00072 Response regulator receiver domain J8Z27_10500 PF02954 Bacterial regulatory protein, Fis family J8Z27_10500 PF00158 Sigma-54 interaction domain J8Z27_10505 PF02151 UvrB/uvrC motif J8Z27_10505 PF17757 UvrB interaction domain J8Z27_10505 PF12344 Ultra-violet resistance protein B J8Z27_10505 PF04851 Type III restriction enzyme, res subunit J8Z27_10505 PF00271 Helicase conserved C-terminal domain J8Z27_10530 PF01551 Peptidase family M23 J8Z27_10530 PF04225 Opacity-associated protein A LysM-like domain J8Z27_10545 PF18269 T3SS EscN ATPase C-terminal domain J8Z27_10545 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J8Z27_10555 PF01706 FliG C-terminal domain J8Z27_10555 PF14841 FliG middle domain J8Z27_10555 PF14842 FliG N-terminal domain J8Z27_10560 PF08345 Flagellar M-ring protein C-terminal J8Z27_10560 PF01514 Secretory protein of YscJ/FliF family J8Z27_10565 PF02049 Flagellar hook-basal body complex protein FliE J8Z27_10570 PF02954 Bacterial regulatory protein, Fis family J8Z27_10570 PF00072 Response regulator receiver domain J8Z27_10570 PF00158 Sigma-54 interaction domain J8Z27_10575 PF00691 OmpA family J8Z27_10575 PF04972 BON domain J8Z27_10585 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J8Z27_10590 PF00813 FliP family J8Z27_10595 PF01313 Bacterial export proteins, family 3 J8Z27_10600 PF01311 Bacterial export proteins, family 1 J8Z27_10605 PF01312 FlhB HrpN YscU SpaS Family J8Z27_10610 PF00771 FHIPEP family J8Z27_10620 PF00700 Bacterial flagellin C-terminal helical region J8Z27_10620 PF00669 Bacterial flagellin N-terminal helical region J8Z27_10625 PF07196 Flagellin hook IN motif J8Z27_10625 PF07195 Flagellar hook-associated protein 2 C-terminus J8Z27_10625 PF02465 Flagellar hook-associated protein 2 N-terminus J8Z27_10630 PF02561 Flagellar protein FliS J8Z27_10645 PF03748 Flagellar basal body-associated protein FliL J8Z27_10650 PF04545 Sigma-70, region 4 J8Z27_10650 PF04542 Sigma-70 region 2 J8Z27_10655 PF01618 MotA/TolQ/ExbB proton channel family J8Z27_10660 PF00691 OmpA family J8Z27_10660 PF13677 Membrane MotB of proton-channel complex MotA/MotB J8Z27_10685 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase J8Z27_10685 PF10135 Rod binding protein J8Z27_10690 PF02119 Flagellar P-ring protein J8Z27_10695 PF02107 Flagellar L-ring protein J8Z27_10700 PF00460 Flagella basal body rod protein J8Z27_10700 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J8Z27_10705 PF00460 Flagella basal body rod protein J8Z27_10705 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J8Z27_10710 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J8Z27_10710 PF07559 Flagellar basal body protein FlaE J8Z27_10710 PF00460 Flagella basal body rod protein J8Z27_10715 PF03963 Flagellar hook capping protein - N-terminal region J8Z27_10715 PF13860 FlgD Ig-like domain J8Z27_10715 PF13861 FlgD Tudor-like domain J8Z27_10720 PF00460 Flagella basal body rod protein J8Z27_10720 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J8Z27_10725 PF00460 Flagella basal body rod protein J8Z27_10745 PF01464 Transglycosylase SLT domain J8Z27_10745 PF01476 LysM domain J8Z27_10750 PF02508 Rnf-Nqr subunit, membrane protein J8Z27_10755 PF04060 Putative Fe-S cluster J8Z27_10760 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit J8Z27_10760 PF12838 4Fe-4S dicluster domain J8Z27_10760 PF13375 RnfC Barrel sandwich hybrid domain J8Z27_10760 PF10531 SLBB domain J8Z27_10765 PF03116 NQR2, RnfD, RnfE family J8Z27_10770 PF04205 FMN-binding domain J8Z27_10775 PF02508 Rnf-Nqr subunit, membrane protein J8Z27_10780 PF00633 Helix-hairpin-helix motif J8Z27_10780 PF10576 Iron-sulfur binding domain of endonuclease III J8Z27_10780 PF00730 HhH-GPD superfamily base excision DNA repair protein J8Z27_10785 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J8Z27_10790 PF10952 Protein of unknown function (DUF2753) J8Z27_10795 PF18393 MotY N-terminal domain J8Z27_10795 PF00691 OmpA family J8Z27_10800 PF00929 Exonuclease J8Z27_10805 PF03553 Na+/H+ antiporter family J8Z27_10805 PF13726 Na+-H+ antiporter family J8Z27_10810 PF06804 NlpB/DapX lipoprotein J8Z27_10815 PF00701 Dihydrodipicolinate synthetase family J8Z27_10820 PF01842 ACT domain J8Z27_10825 PF00578 AhpC/TSA family J8Z27_10830 PF02743 Cache domain J8Z27_10830 PF00672 HAMP domain J8Z27_10830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J8Z27_10835 PF01594 AI-2E family transporter J8Z27_10845 PF13181 Tetratricopeptide repeat J8Z27_10845 PF01435 Peptidase family M48 J8Z27_10850 PF03960 ArsC family J8Z27_10855 PF03358 NADPH-dependent FMN reductase J8Z27_10870 PF00860 Permease family J8Z27_10875 PF04073 Aminoacyl-tRNA editing domain J8Z27_10880 PF00149 Calcineurin-like phosphoesterase J8Z27_10880 PF02872 5'-nucleotidase, C-terminal domain J8Z27_10885 PF00793 DAHP synthetase I family J8Z27_10890 PF13369 Transglutaminase-like superfamily J8Z27_10900 PF13847 Methyltransferase domain J8Z27_10900 PF17827 PrmC N-terminal domain J8Z27_10905 PF03462 PCRF domain J8Z27_10905 PF00472 RF-1 domain J8Z27_10910 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain J8Z27_10910 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain J8Z27_10910 PF01488 Shikimate / quinate 5-dehydrogenase J8Z27_10915 PF03550 Outer membrane lipoprotein LolB J8Z27_10920 PF00288 GHMP kinases N terminal domain J8Z27_10920 PF08544 GHMP kinases C terminal J8Z27_10925 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase J8Z27_10925 PF14572 Phosphoribosyl synthetase-associated domain J8Z27_10930 PF01195 Peptidyl-tRNA hydrolase J8Z27_10935 PF01926 50S ribosome-binding GTPase J8Z27_10935 PF06071 Protein of unknown function (DUF933) J8Z27_11040 PF00700 Bacterial flagellin C-terminal helical region J8Z27_11040 PF07196 Flagellin hook IN motif J8Z27_11040 PF00669 Bacterial flagellin N-terminal helical region J8Z27_11045 PF00700 Bacterial flagellin C-terminal helical region J8Z27_11045 PF07196 Flagellin hook IN motif J8Z27_11045 PF00669 Bacterial flagellin N-terminal helical region J8Z27_11050 PF00700 Bacterial flagellin C-terminal helical region J8Z27_11050 PF00669 Bacterial flagellin N-terminal helical region J8Z27_11055 PF07196 Flagellin hook IN motif J8Z27_11055 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J8Z27_11060 PF10135 Rod binding protein J8Z27_11060 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase J8Z27_11065 PF02119 Flagellar P-ring protein J8Z27_11070 PF02107 Flagellar L-ring protein J8Z27_11075 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J8Z27_11075 PF00460 Flagella basal body rod protein J8Z27_11080 PF00460 Flagella basal body rod protein J8Z27_11080 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J8Z27_11085 PF07559 Flagellar basal body protein FlaE J8Z27_11085 PF00460 Flagella basal body rod protein J8Z27_11085 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J8Z27_11090 PF03963 Flagellar hook capping protein - N-terminal region J8Z27_11090 PF13860 FlgD Ig-like domain J8Z27_11090 PF13861 FlgD Tudor-like domain J8Z27_11095 PF00460 Flagella basal body rod protein J8Z27_11095 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J8Z27_11100 PF00460 Flagella basal body rod protein J8Z27_11105 PF03705 CheR methyltransferase, all-alpha domain J8Z27_11105 PF01739 CheR methyltransferase, SAM binding domain J8Z27_11110 PF00072 Response regulator receiver domain J8Z27_11110 PF01584 CheW-like domain J8Z27_11120 PF04316 Anti-sigma-28 factor, FlgM J8Z27_11150 PF08241 Methyltransferase domain J8Z27_11160 PF00691 OmpA family J8Z27_11160 PF01389 OmpA-like transmembrane domain J8Z27_11165 PF00691 OmpA family J8Z27_11165 PF01389 OmpA-like transmembrane domain J8Z27_11170 PF00749 tRNA synthetases class I (E and Q), catalytic domain J8Z27_11175 PF00403 Heavy-metal-associated domain J8Z27_11185 PF01728 FtsJ-like methyltransferase J8Z27_11185 PF18125 RlmM ferredoxin-like domain J8Z27_11200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_11200 PF03466 LysR substrate binding domain J8Z27_11205 PF02926 THUMP domain J8Z27_11205 PF02568 Thiamine biosynthesis protein (ThiI) J8Z27_11210 PF13677 Membrane MotB of proton-channel complex MotA/MotB J8Z27_11210 PF00691 OmpA family J8Z27_11215 PF01618 MotA/TolQ/ExbB proton channel family J8Z27_11220 PF02609 Exonuclease VII small subunit J8Z27_11225 PF00348 Polyprenyl synthetase J8Z27_11230 PF02780 Transketolase, C-terminal domain J8Z27_11230 PF02779 Transketolase, pyrimidine binding domain J8Z27_11230 PF13292 1-deoxy-D-xylulose-5-phosphate synthase J8Z27_11235 PF00849 RNA pseudouridylate synthase J8Z27_11240 PF04287 tRNA pseudouridine synthase C J8Z27_11255 PF13302 Acetyltransferase (GNAT) domain J8Z27_11265 PF00549 CoA-ligase J8Z27_11265 PF02629 CoA binding domain J8Z27_11270 PF00549 CoA-ligase J8Z27_11270 PF08442 ATP-grasp domain J8Z27_11275 PF00364 Biotin-requiring enzyme J8Z27_11275 PF02817 e3 binding domain J8Z27_11275 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J8Z27_11280 PF16078 2-oxoglutarate dehydrogenase N-terminus J8Z27_11280 PF00676 Dehydrogenase E1 component J8Z27_11280 PF16870 2-oxoglutarate dehydrogenase C-terminal J8Z27_11280 PF02779 Transketolase, pyrimidine binding domain J8Z27_11285 PF13085 2Fe-2S iron-sulfur cluster binding domain J8Z27_11290 PF00890 FAD binding domain J8Z27_11290 PF02910 Fumarate reductase flavoprotein C-term J8Z27_11295 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit J8Z27_11300 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit J8Z27_11305 PF00285 Citrate synthase, C-terminal domain J8Z27_11310 PF01784 NIF3 (NGG1p interacting factor 3) J8Z27_11320 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J8Z27_11320 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J8Z27_11320 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J8Z27_11320 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J8Z27_11325 PF03925 SeqA protein C-terminal domain J8Z27_11325 PF17206 SeqA protein N-terminal domain J8Z27_11330 PF12697 Alpha/beta hydrolase family J8Z27_11340 PF00258 Flavodoxin J8Z27_11345 PF03119 NAD-dependent DNA ligase C4 zinc finger domain J8Z27_11345 PF12826 Helix-hairpin-helix motif J8Z27_11345 PF03120 NAD-dependent DNA ligase OB-fold domain J8Z27_11345 PF00533 BRCA1 C Terminus (BRCT) domain J8Z27_11345 PF01653 NAD-dependent DNA ligase adenylation domain J8Z27_11350 PF04354 ZipA, C-terminal FtsZ-binding domain J8Z27_11360 PF00291 Pyridoxal-phosphate dependent enzyme J8Z27_11365 PF00381 PTS HPr component phosphorylation site J8Z27_11370 PF02896 PEP-utilising enzyme, TIM barrel domain J8Z27_11370 PF05524 PEP-utilising enzyme, N-terminal J8Z27_11370 PF00391 PEP-utilising enzyme, mobile domain J8Z27_11375 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 J8Z27_11380 PF01494 FAD binding domain J8Z27_11385 PF00919 Uncharacterized protein family UPF0004 J8Z27_11385 PF01938 TRAM domain J8Z27_11385 PF04055 Radical SAM superfamily J8Z27_11390 PF02562 PhoH-like protein J8Z27_11395 PF02130 Uncharacterized protein family UPF0054 J8Z27_11400 PF03471 Transporter associated domain J8Z27_11400 PF00571 CBS domain J8Z27_11405 PF00795 Carbon-nitrogen hydrolase J8Z27_11410 PF07295 Zinc-ribbon containing domain J8Z27_11415 PF00133 tRNA synthetases class I (I, L, M and V) J8Z27_11415 PF13603 Leucyl-tRNA synthetase, Domain 2 J8Z27_11415 PF08264 Anticodon-binding domain of tRNA J8Z27_11420 PF04390 Lipopolysaccharide-assembly J8Z27_11425 PF14840 Processivity clamp loader gamma complex DNA pol III C-term J8Z27_11425 PF06144 DNA polymerase III, delta subunit J8Z27_11435 PF02590 Predicted SPOUT methyltransferase J8Z27_11440 PF00905 Penicillin binding protein transpeptidase domain J8Z27_11440 PF03717 Penicillin-binding Protein dimerisation domain J8Z27_11445 PF01098 Cell cycle protein J8Z27_11450 PF05036 Sporulation related domain J8Z27_11450 PF03330 Lytic transglycolase J8Z27_11455 PF00768 D-alanyl-D-alanine carboxypeptidase J8Z27_11455 PF07943 Penicillin-binding protein 5, C-terminal domain J8Z27_11460 PF04359 Protein of unknown function (DUF493) J8Z27_11465 PF03099 Biotin/lipoate A/B protein ligase family J8Z27_11470 PF04055 Radical SAM superfamily J8Z27_11470 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family J8Z27_11485 PF00464 Serine hydroxymethyltransferase J8Z27_11495 PF00873 AcrB/AcrD/AcrF family J8Z27_11500 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J8Z27_11525 PF16657 Maltogenic Amylase, C-terminal domain J8Z27_11525 PF00128 Alpha amylase, catalytic domain J8Z27_11530 PF00367 phosphotransferase system, EIIB J8Z27_11530 PF02378 Phosphotransferase system, EIIC J8Z27_11535 PF00356 Bacterial regulatory proteins, lacI family J8Z27_11550 PF00005 ABC transporter J8Z27_11550 PF09383 NIL domain J8Z27_11555 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_11560 PF03180 NLPA lipoprotein J8Z27_11565 PF03806 AbgT putative transporter family J8Z27_11570 PF00444 Ribosomal protein L36 J8Z27_11575 PF01197 Ribosomal protein L31 J8Z27_11580 PF01980 tRNA-methyltransferase O J8Z27_11580 PF18389 TrmO C-terminal domain J8Z27_11585 PF03129 Anticodon binding domain J8Z27_11585 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J8Z27_11585 PF04073 Aminoacyl-tRNA editing domain J8Z27_11590 PF13230 Glutamine amidotransferases class-II J8Z27_11595 PF13580 SIS domain J8Z27_11600 PF09317 Domain of unknown function (DUF1974) J8Z27_11600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J8Z27_11600 PF02770 Acyl-CoA dehydrogenase, middle domain J8Z27_11600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J8Z27_11610 PF00929 Exonuclease J8Z27_11615 PF00075 RNase H J8Z27_11620 PF08241 Methyltransferase domain J8Z27_11625 PF16123 Hydroxyacylglutathione hydrolase C-terminus J8Z27_11625 PF00753 Metallo-beta-lactamase superfamily J8Z27_11630 PF01464 Transglycosylase SLT domain J8Z27_11630 PF01476 LysM domain J8Z27_11640 PF03372 Endonuclease/Exonuclease/phosphatase family J8Z27_11645 PF00543 Nitrogen regulatory protein P-II J8Z27_11650 PF00034 Cytochrome c J8Z27_11655 PF01171 PP-loop family J8Z27_11655 PF09179 TilS substrate binding domain J8Z27_11655 PF11734 TilS substrate C-terminal domain J8Z27_11660 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit J8Z27_11665 PF01336 OB-fold nucleic acid binding domain J8Z27_11665 PF07733 Bacterial DNA polymerase III alpha NTPase domain J8Z27_11665 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J8Z27_11665 PF14579 Helix-hairpin-helix motif J8Z27_11665 PF02811 PHP domain J8Z27_11670 PF01351 Ribonuclease HII J8Z27_11675 PF02684 Lipid-A-disaccharide synthetase J8Z27_11680 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 J8Z27_11680 PF00132 Bacterial transferase hexapeptide (six repeats) J8Z27_11685 PF07977 FabA-like domain J8Z27_11690 PF00132 Bacterial transferase hexapeptide (six repeats) J8Z27_11690 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD J8Z27_11695 PF03938 Outer membrane protein (OmpH-like) J8Z27_11700 PF01103 Surface antigen J8Z27_11700 PF07244 Surface antigen variable number repeat J8Z27_11705 PF17820 PDZ domain J8Z27_11705 PF02163 Peptidase family M50 J8Z27_11710 PF13288 DXP reductoisomerase C-terminal domain J8Z27_11710 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase J8Z27_11710 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain J8Z27_11720 PF01255 Putative undecaprenyl diphosphate synthase J8Z27_11725 PF01765 Ribosome recycling factor J8Z27_11730 PF00696 Amino acid kinase family J8Z27_11735 PF00889 Elongation factor TS J8Z27_11740 PF00318 Ribosomal protein S2 J8Z27_11745 PF00557 Metallopeptidase family M24 J8Z27_11750 PF01966 HD domain J8Z27_11750 PF08335 GlnD PII-uridylyltransferase J8Z27_11750 PF01909 Nucleotidyltransferase domain J8Z27_11755 PF11944 Protein of unknown function (DUF3461) J8Z27_11760 PF04608 Phosphatidylglycerophosphatase A J8Z27_11765 PF02769 AIR synthase related protein, C-terminal domain J8Z27_11765 PF00586 AIR synthase related protein, N-terminal domain J8Z27_11770 PF01029 NusB family J8Z27_11775 PF00885 6,7-dimethyl-8-ribityllumazine synthase J8Z27_11780 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase J8Z27_11780 PF00925 GTP cyclohydrolase II J8Z27_11785 PF00677 Lumazine binding domain J8Z27_11790 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J8Z27_11790 PF01872 RibD C-terminal domain J8Z27_11795 PF03477 ATP cone domain J8Z27_11800 PF00171 Aldehyde dehydrogenase family J8Z27_11805 PF00696 Amino acid kinase family J8Z27_11805 PF01472 PUA domain J8Z27_11810 PF07417 Sigma factor-binding transcriptional regulator Crl J8Z27_11815 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) J8Z27_11820 PF00156 Phosphoribosyl transferase domain J8Z27_11825 PF00860 Permease family J8Z27_11830 PF01546 Peptidase family M20/M25/M40 J8Z27_11830 PF07687 Peptidase dimerisation domain J8Z27_11835 PF08443 RimK-like ATP-grasp domain J8Z27_11835 PF18030 RimK PreATP-grasp domain J8Z27_11840 PF08443 RimK-like ATP-grasp domain J8Z27_11840 PF18030 RimK PreATP-grasp domain J8Z27_11850 PF00209 Sodium:neurotransmitter symporter family J8Z27_11855 PF06483 Chitinase C J8Z27_11855 PF00704 Glycosyl hydrolases family 18 J8Z27_11865 PF01272 Transcription elongation factor, GreA/GreB, C-term J8Z27_11865 PF03449 Transcription elongation factor, N-terminal J8Z27_11870 PF00270 DEAD/DEAH box helicase J8Z27_11870 PF00271 Helicase conserved C-terminal domain J8Z27_11870 PF00570 HRDC domain J8Z27_11870 PF16124 RecQ zinc-binding J8Z27_11870 PF09382 RQC domain J8Z27_11875 PF00817 impB/mucB/samB family J8Z27_11875 PF11799 impB/mucB/samB family C-terminal domain J8Z27_11880 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_11880 PF00072 Response regulator receiver domain J8Z27_11890 PF02424 ApbE family J8Z27_11895 PF00970 Oxidoreductase FAD-binding domain J8Z27_11895 PF00111 2Fe-2S iron-sulfur cluster binding domain J8Z27_11895 PF00175 Oxidoreductase NAD-binding domain J8Z27_11900 PF02508 Rnf-Nqr subunit, membrane protein J8Z27_11905 PF02508 Rnf-Nqr subunit, membrane protein J8Z27_11910 PF04205 FMN-binding domain J8Z27_11915 PF03116 NQR2, RnfD, RnfE family J8Z27_11920 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) J8Z27_11920 PF11973 NQRA C-terminal domain J8Z27_11925 PF01722 BolA-like protein J8Z27_11930 PF05175 Methyltransferase small domain J8Z27_11940 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J8Z27_11960 PF04542 Sigma-70 region 2 J8Z27_11960 PF04545 Sigma-70, region 4 J8Z27_11970 PF03502 Nucleoside-specific channel-forming protein, Tsx J8Z27_11975 PF02558 Ketopantoate reductase PanE/ApbA J8Z27_11975 PF08546 Ketopantoate reductase PanE/ApbA C terminal J8Z27_11980 PF01965 DJ-1/PfpI family J8Z27_11985 PF00266 Aminotransferase class-V J8Z27_11990 PF18073 Rubredoxin metal binding domain J8Z27_12000 PF18429 Domain of unknown function (DUF5609) J8Z27_12010 PF01048 Phosphorylase superfamily J8Z27_12015 PF01676 Metalloenzyme superfamily J8Z27_12020 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain J8Z27_12020 PF02885 Glycosyl transferase family, helical bundle domain J8Z27_12020 PF00591 Glycosyl transferase family, a/b domain J8Z27_12025 PF01791 DeoC/LacD family aldolase J8Z27_12035 PF07670 Nucleoside recognition J8Z27_12035 PF07662 Na+ dependent nucleoside transporter C-terminus J8Z27_12035 PF01773 Na+ dependent nucleoside transporter N-terminus J8Z27_12040 PF01026 TatD related DNase J8Z27_12050 PF03883 Peroxide stress protein YaaA J8Z27_12055 PF01235 Sodium:alanine symporter family J8Z27_12070 PF03167 Uracil DNA glycosylase superfamily J8Z27_12075 PF01261 Xylose isomerase-like TIM barrel J8Z27_12080 PF01228 Glycine radical J8Z27_12085 PF03466 LysR substrate binding domain J8Z27_12085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_12090 PF01925 Sulfite exporter TauE/SafE J8Z27_12095 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J8Z27_12095 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain J8Z27_12095 PF02142 MGS-like domain J8Z27_12100 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain J8Z27_12100 PF00117 Glutamine amidotransferase class-I J8Z27_12105 PF05173 Dihydrodipicolinate reductase, C-terminus J8Z27_12105 PF01113 Dihydrodipicolinate reductase, N-terminus J8Z27_12110 PF00293 NUDIX domain J8Z27_12115 PF07516 SecA Wing and Scaffold domain J8Z27_12115 PF07517 SecA DEAD-like domain J8Z27_12115 PF02810 SEC-C motif J8Z27_12115 PF01043 SecA preprotein cross-linking domain J8Z27_12120 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase J8Z27_12125 PF00091 Tubulin/FtsZ family, GTPase domain J8Z27_12125 PF12327 FtsZ family, C-terminal domain J8Z27_12130 PF02491 SHS2 domain inserted in FTSA J8Z27_12135 PF03799 Cell division protein FtsQ J8Z27_12135 PF08478 POTRA domain, FtsQ-type J8Z27_12140 PF08245 Mur ligase middle domain J8Z27_12140 PF01225 Mur ligase family, catalytic domain J8Z27_12140 PF02875 Mur ligase family, glutamate ligase domain J8Z27_12145 PF04101 Glycosyltransferase family 28 C-terminal domain J8Z27_12145 PF03033 Glycosyltransferase family 28 N-terminal domain J8Z27_12150 PF01098 Cell cycle protein J8Z27_12155 PF02875 Mur ligase family, glutamate ligase domain J8Z27_12155 PF08245 Mur ligase middle domain J8Z27_12160 PF00953 Glycosyl transferase family 4 J8Z27_12160 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 J8Z27_12165 PF08245 Mur ligase middle domain J8Z27_12165 PF02875 Mur ligase family, glutamate ligase domain J8Z27_12165 PF01225 Mur ligase family, catalytic domain J8Z27_12170 PF02875 Mur ligase family, glutamate ligase domain J8Z27_12170 PF08245 Mur ligase middle domain J8Z27_12170 PF01225 Mur ligase family, catalytic domain J8Z27_12175 PF03717 Penicillin-binding Protein dimerisation domain J8Z27_12175 PF00905 Penicillin binding protein transpeptidase domain J8Z27_12180 PF04999 Cell division protein FtsL J8Z27_12185 PF01795 MraW methylase family J8Z27_12195 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J8Z27_12200 PF04348 LppC putative lipoprotein J8Z27_12205 PF02021 Uncharacterised protein family UPF0102 J8Z27_12210 PF13580 SIS domain J8Z27_12215 PF04972 BON domain J8Z27_12220 PF04386 Stringent starvation protein B J8Z27_12225 PF00043 Glutathione S-transferase, C-terminal domain J8Z27_12225 PF02798 Glutathione S-transferase, N-terminal domain J8Z27_12230 PF02167 Cytochrome C1 family J8Z27_12235 PF00032 Cytochrome b(C-terminal)/b6/petD J8Z27_12235 PF00033 Cytochrome b/b6/petB J8Z27_12240 PF00355 Rieske [2Fe-2S] domain J8Z27_12240 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal J8Z27_12245 PF00380 Ribosomal protein S9/S16 J8Z27_12250 PF00572 Ribosomal protein L13 J8Z27_12255 PF03969 AFG1-like ATPase J8Z27_12260 PF06295 Protein of unknown function (DUF1043) J8Z27_12265 PF00595 PDZ domain J8Z27_12270 PF13180 PDZ domain J8Z27_12275 PF03989 DNA gyrase C-terminal domain, beta-propeller J8Z27_12275 PF00521 DNA gyrase/topoisomerase IV, subunit A J8Z27_12280 PF00204 DNA gyrase B J8Z27_12280 PF00986 DNA gyrase B subunit, carboxyl terminus J8Z27_12280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_12280 PF01751 Toprim domain J8Z27_12285 PF05728 Uncharacterised protein family (UPF0227) J8Z27_12290 PF00149 Calcineurin-like phosphoesterase J8Z27_12295 PF06853 Protein of unknown function (DUF1249) J8Z27_12300 PF00293 NUDIX domain J8Z27_12305 PF02321 Outer membrane efflux protein J8Z27_12315 PF01627 Hpt domain J8Z27_12315 PF18415 Histidine kinase receptor ArcB trans-membrane domain J8Z27_12315 PF00512 His Kinase A (phospho-acceptor) domain J8Z27_12315 PF00989 PAS fold J8Z27_12315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_12315 PF00072 Response regulator receiver domain J8Z27_12320 PF00563 EAL domain J8Z27_12320 PF01590 GAF domain J8Z27_12320 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_12320 PF00360 Phytochrome region J8Z27_12325 PF16199 Radical_SAM C-terminal domain J8Z27_12325 PF04055 Radical SAM superfamily J8Z27_12330 PF04898 Glutamate synthase central domain J8Z27_12330 PF01645 Conserved region in glutamate synthase J8Z27_12330 PF01493 GXGXG motif J8Z27_12330 PF00310 Glutamine amidotransferases class-II J8Z27_12335 PF07992 Pyridine nucleotide-disulphide oxidoreductase J8Z27_12335 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster J8Z27_12340 PF00310 Glutamine amidotransferases class-II J8Z27_12340 PF04898 Glutamate synthase central domain J8Z27_12340 PF01645 Conserved region in glutamate synthase J8Z27_12340 PF01493 GXGXG motif J8Z27_12345 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster J8Z27_12345 PF07992 Pyridine nucleotide-disulphide oxidoreductase J8Z27_12355 PF16198 tRNA pseudouridylate synthase B C-terminal domain J8Z27_12355 PF01509 TruB family pseudouridylate synthase (N terminal domain) J8Z27_12355 PF09157 Pseudouridine synthase II TruB, C-terminal J8Z27_12360 PF02033 Ribosome-binding factor A J8Z27_12365 PF00009 Elongation factor Tu GTP binding domain J8Z27_12365 PF08364 Bacterial translation initiation factor IF-2 associated region J8Z27_12365 PF04760 Translation initiation factor IF-2, N-terminal region J8Z27_12365 PF11987 Translation-initiation factor 2 J8Z27_12370 PF00575 S1 RNA binding domain J8Z27_12370 PF08529 NusA N-terminal domain J8Z27_12370 PF13184 NusA-like KH domain J8Z27_12375 PF02576 RimP N-terminal domain J8Z27_12375 PF17384 RimP C-terminal SH3 domain J8Z27_12450 PF03840 Preprotein translocase SecG subunit J8Z27_12455 PF13508 Acetyltransferase (GNAT) domain J8Z27_12460 PF02036 SCP-2 sterol transfer family J8Z27_12465 PF00563 EAL domain J8Z27_12465 PF03707 Bacterial signalling protein N terminal repeat J8Z27_12465 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_12470 PF01136 Peptidase family U32 J8Z27_12475 PF01136 Peptidase family U32 J8Z27_12480 PF01336 OB-fold nucleic acid binding domain J8Z27_12480 PF00152 tRNA synthetases class II (D, K and N) J8Z27_12490 PF05525 Branched-chain amino acid transport protein J8Z27_12495 PF05175 Methyltransferase small domain J8Z27_12500 PF00270 DEAD/DEAH box helicase J8Z27_12500 PF00271 Helicase conserved C-terminal domain J8Z27_12505 PF03144 Elongation factor Tu domain 2 J8Z27_12505 PF16658 Class II release factor RF3, C-terminal domain J8Z27_12505 PF00009 Elongation factor Tu GTP binding domain J8Z27_12510 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_12510 PF00563 EAL domain J8Z27_12510 PF03707 Bacterial signalling protein N terminal repeat J8Z27_12515 PF00583 Acetyltransferase (GNAT) family J8Z27_12525 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J8Z27_12525 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J8Z27_12525 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J8Z27_12525 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J8Z27_12530 PF00809 Pterin binding enzyme J8Z27_12535 PF00004 ATPase family associated with various cellular activities (AAA) J8Z27_12535 PF06480 FtsH Extracellular J8Z27_12535 PF17862 AAA+ lid domain J8Z27_12535 PF01434 Peptidase family M41 J8Z27_12540 PF01728 FtsJ-like methyltransferase J8Z27_12545 PF01985 CRS1 / YhbY (CRM) domain J8Z27_12550 PF01272 Transcription elongation factor, GreA/GreB, C-term J8Z27_12550 PF03449 Transcription elongation factor, N-terminal J8Z27_12555 PF13609 Gram-negative porin J8Z27_12560 PF00873 AcrB/AcrD/AcrF family J8Z27_12570 PF01521 Iron-sulphur cluster biosynthesis J8Z27_12575 PF00202 Aminotransferase class-III J8Z27_12580 PF01594 AI-2E family transporter J8Z27_12585 PF05175 Methyltransferase small domain J8Z27_12585 PF08468 Methyltransferase small domain N-terminal J8Z27_12590 PF00072 Response regulator receiver domain J8Z27_12590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_12590 PF00512 His Kinase A (phospho-acceptor) domain J8Z27_12590 PF00497 Bacterial extracellular solute-binding proteins, family 3 J8Z27_12595 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J8Z27_12600 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_12605 PF12911 N-terminal TM domain of oligopeptide transport permease C J8Z27_12605 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_12610 PF00005 ABC transporter J8Z27_12610 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J8Z27_12615 PF00005 ABC transporter J8Z27_12615 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J8Z27_12625 PF01869 BadF/BadG/BcrA/BcrD ATPase family J8Z27_12630 PF02838 Glycosyl hydrolase family 20, domain 2 J8Z27_12630 PF00728 Glycosyl hydrolase family 20, catalytic domain J8Z27_12635 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain J8Z27_12635 PF06165 Glycosyltransferase family 36 J8Z27_12640 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J8Z27_12640 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J8Z27_12640 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J8Z27_12640 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J8Z27_12645 PF00005 ABC transporter J8Z27_12645 PF08402 TOBE domain J8Z27_12655 PF13416 Bacterial extracellular solute-binding protein J8Z27_12660 PF00909 Ammonium Transporter Family J8Z27_12665 PF00543 Nitrogen regulatory protein P-II J8Z27_12670 PF06062 Uncharacterised protein family (UPF0231) J8Z27_12675 PF00330 Aconitase family (aconitate hydratase) J8Z27_12675 PF06434 Aconitate hydratase 2 N-terminus J8Z27_12675 PF11791 Aconitate B N-terminal domain J8Z27_12680 PF01734 Patatin-like phospholipase J8Z27_12685 PF00912 Transglycosylase J8Z27_12685 PF00905 Penicillin binding protein transpeptidase domain J8Z27_12685 PF14814 Bifunctional transglycosylase second domain J8Z27_12705 PF00171 Aldehyde dehydrogenase family J8Z27_12715 PF01797 Transposase IS200 like J8Z27_12735 PF13737 Transposase DDE domain J8Z27_12745 PF13737 Transposase DDE domain J8Z27_12755 PF13737 Transposase DDE domain J8Z27_12760 PF00884 Sulfatase J8Z27_12765 PF16925 Tetracyclin repressor-like, C-terminal domain J8Z27_12765 PF00440 Bacterial regulatory proteins, tetR family J8Z27_12795 PF00270 DEAD/DEAH box helicase J8Z27_12795 PF04408 Helicase associated domain (HA2) J8Z27_12795 PF00271 Helicase conserved C-terminal domain J8Z27_12795 PF08482 ATP-dependent helicase C-terminal J8Z27_12800 PF17746 SfsA N-terminal OB domain J8Z27_12800 PF03749 Sugar fermentation stimulation protein RE domain J8Z27_12805 PF01258 Prokaryotic dksA/traR C4-type zinc finger J8Z27_12810 PF00749 tRNA synthetases class I (E and Q), catalytic domain J8Z27_12815 PF12626 Polymerase A arginine-rich C-terminus J8Z27_12815 PF01743 Poly A polymerase head domain J8Z27_12815 PF12627 Probable RNA and SrmB- binding site of polymerase A J8Z27_12820 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J8Z27_12825 PF02548 Ketopantoate hydroxymethyltransferase J8Z27_12830 PF02569 Pantoate-beta-alanine ligase J8Z27_12835 PF01061 ABC-2 type transporter J8Z27_12840 PF00005 ABC transporter J8Z27_12845 PF01740 STAS domain J8Z27_12845 PF00916 Sulfate permease family J8Z27_12850 PF00484 Carbonic anhydrase J8Z27_12855 PF00156 Phosphoribosyl transferase domain J8Z27_12860 PF00440 Bacterial regulatory proteins, tetR family J8Z27_12865 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J8Z27_12865 PF07992 Pyridine nucleotide-disulphide oxidoreductase J8Z27_12870 PF00364 Biotin-requiring enzyme J8Z27_12870 PF02817 e3 binding domain J8Z27_12870 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J8Z27_12875 PF17831 Pyruvate dehydrogenase E1 component middle domain J8Z27_12875 PF00456 Transketolase, thiamine diphosphate binding domain J8Z27_12880 PF07729 FCD domain J8Z27_12880 PF00392 Bacterial regulatory proteins, gntR family J8Z27_12885 PF02272 DHHA1 domain J8Z27_12885 PF17768 RecJ OB domain J8Z27_12885 PF01368 DHH family J8Z27_12890 PF10411 Disulfide bond isomerase protein N-terminus J8Z27_12890 PF13098 Thioredoxin-like domain J8Z27_12895 PF00589 Phage integrase family J8Z27_12895 PF02899 Phage integrase, N-terminal SAM-like domain J8Z27_12900 PF00258 Flavodoxin J8Z27_12905 PF01510 N-acetylmuramoyl-L-alanine amidase J8Z27_12910 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain J8Z27_12910 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain J8Z27_12915 PF00114 Pilin (bacterial filament) J8Z27_12915 PF07963 Prokaryotic N-terminal methylation motif J8Z27_12920 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J8Z27_12920 PF00437 Type II/IV secretion system protein J8Z27_12925 PF00482 Type II secretion system (T2SS), protein F J8Z27_12930 PF01478 Type IV leader peptidase family J8Z27_12930 PF06750 Bacterial Peptidase A24 N-terminal domain J8Z27_12935 PF01121 Dephospho-CoA kinase J8Z27_12940 PF07072 Cell division protein J8Z27_12945 PF03884 DNA gyrase inhibitor YacG J8Z27_12950 PF01245 Ribosomal protein L19 J8Z27_12955 PF01746 tRNA (Guanine-1)-methyltransferase J8Z27_12960 PF05239 PRC-barrel domain J8Z27_12960 PF01782 RimM N-terminal domain J8Z27_12965 PF00886 Ribosomal protein S16 J8Z27_12970 PF02978 Signal peptide binding domain J8Z27_12970 PF02881 SRP54-type protein, helical bundle domain J8Z27_12970 PF00448 SRP54-type protein, GTPase domain J8Z27_12975 PF01578 Cytochrome C assembly protein J8Z27_12980 PF00571 CBS domain J8Z27_12980 PF03471 Transporter associated domain J8Z27_12980 PF01595 Cyclin M transmembrane N-terminal domain J8Z27_12985 PF00140 Sigma-70 factor, region 1.2 J8Z27_12985 PF04542 Sigma-70 region 2 J8Z27_12985 PF04539 Sigma-70 region 3 J8Z27_12985 PF04545 Sigma-70, region 4 J8Z27_12990 PF01476 LysM domain J8Z27_12990 PF01551 Peptidase family M23 J8Z27_13000 PF01975 Survival protein SurE J8Z27_13005 PF01142 tRNA pseudouridine synthase D (TruD) J8Z27_13010 PF02542 YgbB family J8Z27_13015 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase J8Z27_13020 PF04977 Septum formation initiator J8Z27_13025 PF02673 Bacitracin resistance protein BacA J8Z27_13030 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J8Z27_13035 PF02152 Dihydroneopterin aldolase J8Z27_13040 PF02660 Glycerol-3-phosphate acyltransferase J8Z27_13045 PF00561 alpha/beta hydrolase fold J8Z27_13050 PF01609 Transposase DDE domain J8Z27_13050 PF13006 Insertion element 4 transposase N-terminal J8Z27_13055 PF00814 Glycoprotease family J8Z27_13060 PF01165 Ribosomal protein S21 J8Z27_13065 PF09424 Yqey-like protein J8Z27_13070 PF10410 DnaB-helicase binding domain of primase J8Z27_13070 PF08278 DNA primase DnaG DnaB-binding J8Z27_13070 PF08275 DNA primase catalytic core, N-terminal domain J8Z27_13070 PF01807 CHC2 zinc finger J8Z27_13075 PF04546 Sigma-70, non-essential region J8Z27_13075 PF03979 Sigma-70 factor, region 1.1 J8Z27_13075 PF00140 Sigma-70 factor, region 1.2 J8Z27_13075 PF04542 Sigma-70 region 2 J8Z27_13075 PF04539 Sigma-70 region 3 J8Z27_13075 PF04545 Sigma-70, region 4 J8Z27_13085 PF05099 Tellurite resistance protein TerB J8Z27_13085 PF00226 DnaJ domain J8Z27_13090 PF03968 OstA-like protein J8Z27_13090 PF04453 LPS transport system D J8Z27_13095 PF09312 SurA N-terminal domain J8Z27_13100 PF04166 Pyridoxal phosphate biosynthetic protein PdxA J8Z27_13105 PF00398 Ribosomal RNA adenine dimethylase J8Z27_13110 PF04379 ApaG domain J8Z27_13115 PF00149 Calcineurin-like phosphoesterase J8Z27_13120 PF00186 Dihydrofolate reductase J8Z27_13125 PF12821 Threonine/Serine exporter, ThrE J8Z27_13130 PF06738 Putative threonine/serine exporter J8Z27_13135 PF01018 GTP1/OBG J8Z27_13135 PF01926 50S ribosome-binding GTPase J8Z27_13140 PF01016 Ribosomal L27 protein J8Z27_13145 PF00829 Ribosomal prokaryotic L21 protein J8Z27_13150 PF00348 Polyprenyl synthetase J8Z27_13200 PF00072 Response regulator receiver domain J8Z27_13215 PF00145 C-5 cytosine-specific DNA methylase J8Z27_13250 PF02899 Phage integrase, N-terminal SAM-like domain J8Z27_13250 PF00589 Phage integrase family J8Z27_13315 PF02664 S-Ribosylhomocysteinase (LuxS) J8Z27_13325 PF04262 Glutamate-cysteine ligase J8Z27_13330 PF00675 Insulinase (Peptidase family M16) J8Z27_13330 PF05193 Peptidase M16 inactive domain J8Z27_13335 PF09335 SNARE associated Golgi protein J8Z27_13340 PF00107 Zinc-binding dehydrogenase J8Z27_13340 PF08240 Alcohol dehydrogenase GroES-like domain J8Z27_13345 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit J8Z27_13350 PF02436 Conserved carboxylase domain J8Z27_13350 PF00682 HMGL-like J8Z27_13350 PF00364 Biotin-requiring enzyme J8Z27_13355 PF04277 Oxaloacetate decarboxylase, gamma chain J8Z27_13400 PF02599 Global regulator protein family J8Z27_13405 PF13840 ACT domain J8Z27_13405 PF01842 ACT domain J8Z27_13405 PF00696 Amino acid kinase family J8Z27_13410 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J8Z27_13410 PF01411 tRNA synthetases class II (A) J8Z27_13410 PF02272 DHHA1 domain J8Z27_13415 PF02631 RecX family J8Z27_13420 PF00154 recA bacterial DNA recombination protein J8Z27_13425 PF02464 Competence-damaged protein J8Z27_13430 PF05188 MutS domain II J8Z27_13430 PF00488 MutS domain V J8Z27_13430 PF05190 MutS family domain IV J8Z27_13430 PF05192 MutS domain III J8Z27_13430 PF01624 MutS domain I J8Z27_13435 PF03739 Lipopolysaccharide export system permease LptF/LptG J8Z27_13440 PF03739 Lipopolysaccharide export system permease LptF/LptG J8Z27_13445 PF02789 Cytosol aminopeptidase family, N-terminal domain J8Z27_13445 PF00883 Cytosol aminopeptidase family, catalytic domain J8Z27_13450 PF04364 DNA polymerase III chi subunit, HolC J8Z27_13455 PF00133 tRNA synthetases class I (I, L, M and V) J8Z27_13455 PF08264 Anticodon-binding domain of tRNA J8Z27_13455 PF10458 Valyl tRNA synthetase tRNA binding arm J8Z27_13465 PF05987 Bacterial protein of unknown function (DUF898) J8Z27_13475 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J8Z27_13475 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J8Z27_13480 PF00849 RNA pseudouridylate synthase J8Z27_13490 PF18337 RapA N-terminal Tudor like domain J8Z27_13490 PF00271 Helicase conserved C-terminal domain J8Z27_13490 PF12137 RNA polymerase recycling family C-terminal J8Z27_13490 PF00176 SNF2 family N-terminal domain J8Z27_13490 PF18339 RapA N-terminal Tudor like domain 1 J8Z27_13495 PF02562 PhoH-like protein J8Z27_13495 PF13638 PIN domain J8Z27_13500 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J8Z27_13500 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J8Z27_13505 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J8Z27_13505 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J8Z27_13510 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain J8Z27_13510 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain J8Z27_13515 PF01042 Endoribonuclease L-PSP J8Z27_13525 PF00056 lactate/malate dehydrogenase, NAD binding domain J8Z27_13525 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain J8Z27_13530 PF01316 Arginine repressor, DNA binding domain J8Z27_13530 PF02863 Arginine repressor, C-terminal domain J8Z27_13535 PF16868 NMT1-like family J8Z27_13545 PF00582 Universal stress protein family J8Z27_13560 PF06877 Regulator of ribonuclease activity B J8Z27_13570 PF00266 Aminotransferase class-V J8Z27_13575 PF00696 Amino acid kinase family J8Z27_13575 PF01842 ACT domain J8Z27_13580 PF01523 Putative modulator of DNA gyrase J8Z27_13585 PF04751 Protein of unknown function (DUF615) J8Z27_13590 PF01553 Acyltransferase J8Z27_13595 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J8Z27_13600 PF01722 BolA-like protein J8Z27_13610 PF05494 MlaC protein J8Z27_13615 PF02470 MlaD protein J8Z27_13620 PF02405 Permease MlaE J8Z27_13625 PF00005 ABC transporter J8Z27_13630 PF01699 Sodium/calcium exchanger protein J8Z27_13635 PF00571 CBS domain J8Z27_13635 PF01380 SIS domain J8Z27_13650 PF03968 OstA-like protein J8Z27_13655 PF12399 Branched-chain amino acid ATP-binding cassette transporter J8Z27_13655 PF00005 ABC transporter J8Z27_13660 PF04963 Sigma-54 factor, core binding domain J8Z27_13660 PF04552 Sigma-54, DNA binding domain J8Z27_13660 PF00309 Sigma-54 factor, Activator interacting domain (AID) J8Z27_13665 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein J8Z27_13670 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J8Z27_13675 PF03668 P-loop ATPase protein family J8Z27_13680 PF00381 PTS HPr component phosphorylation site J8Z27_13685 PF03448 MgtE intracellular N domain J8Z27_13685 PF01769 Divalent cation transporter J8Z27_13685 PF00571 CBS domain J8Z27_13690 PF00809 Pterin binding enzyme J8Z27_13690 PF02574 Homocysteine S-methyltransferase J8Z27_13690 PF02607 B12 binding domain J8Z27_13690 PF02310 B12 binding domain J8Z27_13690 PF02965 Vitamin B12 dependent methionine synthase, activation domain J8Z27_13695 PF00999 Sodium/hydrogen exchanger family J8Z27_13760 PF01507 Phosphoadenosine phosphosulfate reductase family J8Z27_13765 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J8Z27_13765 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain J8Z27_13770 PF00667 FAD binding domain J8Z27_13770 PF00258 Flavodoxin J8Z27_13770 PF00175 Oxidoreductase NAD-binding domain J8Z27_13790 PF01207 Dihydrouridine synthase (Dus) J8Z27_13795 PF00072 Response regulator receiver domain J8Z27_13800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_13800 PF00512 His Kinase A (phospho-acceptor) domain J8Z27_13800 PF01627 Hpt domain J8Z27_13800 PF00072 Response regulator receiver domain J8Z27_13800 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J8Z27_13800 PF00672 HAMP domain J8Z27_13805 PF01475 Ferric uptake regulator family J8Z27_13820 PF03600 Citrate transporter J8Z27_13820 PF02080 TrkA-C domain J8Z27_13825 PF00009 Elongation factor Tu GTP binding domain J8Z27_13830 PF01507 Phosphoadenosine phosphosulfate reductase family J8Z27_13835 PF10414 Sirohaem synthase dimerisation region J8Z27_13835 PF14824 Sirohaem biosynthesis protein central J8Z27_13835 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J8Z27_13840 PF02872 5'-nucleotidase, C-terminal domain J8Z27_13840 PF00149 Calcineurin-like phosphoesterase J8Z27_13850 PF13673 Acetyltransferase (GNAT) domain J8Z27_13865 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J8Z27_13865 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J8Z27_13875 PF01196 Ribosomal protein L17 J8Z27_13880 PF01000 RNA polymerase Rpb3/RpoA insert domain J8Z27_13880 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain J8Z27_13880 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain J8Z27_13885 PF00163 Ribosomal protein S4/S9 N-terminal domain J8Z27_13885 PF01479 S4 domain J8Z27_13890 PF00411 Ribosomal protein S11 J8Z27_13895 PF00416 Ribosomal protein S13/S18 J8Z27_13900 PF00444 Ribosomal protein L36 J8Z27_13905 PF00344 SecY translocase J8Z27_13910 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A J8Z27_13915 PF00327 Ribosomal protein L30p/L7e J8Z27_13920 PF00333 Ribosomal protein S5, N-terminal domain J8Z27_13920 PF03719 Ribosomal protein S5, C-terminal domain J8Z27_13925 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast J8Z27_13930 PF00347 Ribosomal protein L6 J8Z27_13935 PF00410 Ribosomal protein S8 J8Z27_13940 PF00253 Ribosomal protein S14p/S29e J8Z27_13945 PF00281 Ribosomal protein L5 J8Z27_13945 PF00673 ribosomal L5P family C-terminus J8Z27_13950 PF00467 KOW motif J8Z27_13950 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 J8Z27_13955 PF00238 Ribosomal protein L14p/L23e J8Z27_13960 PF00366 Ribosomal protein S17 J8Z27_13965 PF00831 Ribosomal L29 protein J8Z27_13970 PF00252 Ribosomal protein L16p/L10e J8Z27_13975 PF07650 KH domain J8Z27_13975 PF00189 Ribosomal protein S3, C-terminal domain J8Z27_13980 PF00237 Ribosomal protein L22p/L17e J8Z27_13985 PF00203 Ribosomal protein S19 J8Z27_13990 PF03947 Ribosomal Proteins L2, C-terminal domain J8Z27_13990 PF00181 Ribosomal Proteins L2, RNA binding domain J8Z27_13995 PF00276 Ribosomal protein L23 J8Z27_14000 PF00573 Ribosomal protein L4/L1 family J8Z27_14005 PF00297 Ribosomal protein L3 J8Z27_14010 PF00338 Ribosomal protein S10p/S20e J8Z27_14015 PF08032 RNA 2'-O ribose methyltransferase substrate binding J8Z27_14015 PF00588 SpoU rRNA Methylase family J8Z27_14020 PF00773 RNB domain J8Z27_14020 PF08206 Ribonuclease B OB domain J8Z27_14020 PF08461 Ribonuclease R winged-helix domain J8Z27_14020 PF17876 Cold shock domain J8Z27_14020 PF00575 S1 RNA binding domain J8Z27_14025 PF01979 Amidohydrolase family J8Z27_14030 PF08238 Sel1 repeat J8Z27_14035 PF00709 Adenylosuccinate synthetase J8Z27_14040 PF01112 Asparaginase J8Z27_14045 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J8Z27_14055 PF00999 Sodium/hydrogen exchanger family J8Z27_14055 PF02254 TrkA-N domain J8Z27_14060 PF02525 Flavodoxin-like fold J8Z27_14065 PF00005 ABC transporter J8Z27_14065 PF12848 ABC transporter J8Z27_14075 PF00561 alpha/beta hydrolase fold J8Z27_14080 PF06794 Uncharacterised protein family (UPF0270) J8Z27_14085 PF00485 Phosphoribulokinase / Uridine kinase family J8Z27_14090 PF13545 Crp-like helix-turn-helix domain J8Z27_14090 PF00027 Cyclic nucleotide-binding domain J8Z27_14095 PF03600 Citrate transporter J8Z27_14095 PF02080 TrkA-C domain J8Z27_14100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J8Z27_14100 PF00672 HAMP domain J8Z27_14110 PF06415 BPG-independent PGAM N-terminus (iPGM_N) J8Z27_14110 PF01676 Metalloenzyme superfamily J8Z27_14115 PF01551 Peptidase family M23 J8Z27_14125 PF08360 QacR-like protein, C-terminal region J8Z27_14125 PF00440 Bacterial regulatory proteins, tetR family J8Z27_14130 PF01208 Uroporphyrinogen decarboxylase (URO-D) J8Z27_14135 PF00293 NUDIX domain J8Z27_14135 PF09297 NADH pyrophosphatase zinc ribbon domain J8Z27_14140 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ J8Z27_14145 PF03606 C4-dicarboxylate anaerobic carrier J8Z27_14155 PF00696 Amino acid kinase family J8Z27_14160 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J8Z27_14160 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J8Z27_14165 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J8Z27_14165 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J8Z27_14170 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain J8Z27_14170 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain J8Z27_14175 PF01316 Arginine repressor, DNA binding domain J8Z27_14175 PF02863 Arginine repressor, C-terminal domain J8Z27_14180 PF02683 Cytochrome C biogenesis protein transmembrane region J8Z27_14180 PF11412 Disulphide bond corrector protein DsbC J8Z27_14185 PF00196 Bacterial regulatory proteins, luxR family J8Z27_14185 PF00072 Response regulator receiver domain J8Z27_14190 PF01914 MarC family integral membrane protein J8Z27_14200 PF00474 Sodium:solute symporter family J8Z27_14220 PF00121 Triosephosphate isomerase J8Z27_14225 PF01554 MatE J8Z27_14230 PF03737 Aldolase/RraA J8Z27_14235 PF01040 UbiA prenyltransferase family J8Z27_14240 PF09285 Elongation factor P, C-terminal J8Z27_14240 PF08207 Elongation factor P (EF-P) KOW-like domain J8Z27_14240 PF01132 Elongation factor P (EF-P) OB domain J8Z27_14245 PF04055 Radical SAM superfamily J8Z27_14255 PF02308 MgtC family J8Z27_14260 PF00365 Phosphofructokinase J8Z27_14265 PF01545 Cation efflux family J8Z27_14265 PF16916 Dimerisation domain of Zinc Transporter J8Z27_14275 PF00072 Response regulator receiver domain J8Z27_14275 PF00486 Transcriptional regulatory protein, C terminal J8Z27_14280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_14280 PF00512 His Kinase A (phospho-acceptor) domain J8Z27_14280 PF16527 Two-component sensor protein CpxA, periplasmic domain J8Z27_14280 PF00672 HAMP domain J8Z27_14285 PF02777 Iron/manganese superoxide dismutases, C-terminal domain J8Z27_14285 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain J8Z27_14290 PF00588 SpoU rRNA Methylase family J8Z27_14295 PF00579 tRNA synthetases class I (W and Y) J8Z27_14300 PF13419 Haloacid dehalogenase-like hydrolase J8Z27_14305 PF00834 Ribulose-phosphate 3 epimerase family J8Z27_14310 PF02086 D12 class N6 adenine-specific DNA methyltransferase J8Z27_14320 PF01761 3-dehydroquinate synthase J8Z27_14325 PF01202 Shikimate kinase J8Z27_14330 PF11741 AMIN domain J8Z27_14330 PF00263 Bacterial type II and III secretion system protein J8Z27_14330 PF03958 Bacterial type II/III secretion system short domain J8Z27_14330 PF07660 Secretin and TonB N terminus short domain J8Z27_14345 PF05137 Fimbrial assembly protein (PilN) J8Z27_14355 PF00912 Transglycosylase J8Z27_14355 PF00905 Penicillin binding protein transpeptidase domain J8Z27_14355 PF17092 Penicillin-binding protein OB-like domain J8Z27_14360 PF03466 LysR substrate binding domain J8Z27_14360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_14365 PF00462 Glutaredoxin J8Z27_14365 PF08534 Redoxin J8Z27_14370 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J8Z27_14370 PF07992 Pyridine nucleotide-disulphide oxidoreductase J8Z27_14375 PF01042 Endoribonuclease L-PSP J8Z27_14385 PF00206 Lyase J8Z27_14385 PF14698 Argininosuccinate lyase C-terminal J8Z27_14385 PF00583 Acetyltransferase (GNAT) family J8Z27_14390 PF00764 Arginosuccinate synthase J8Z27_14395 PF00696 Amino acid kinase family J8Z27_14400 PF02774 Semialdehyde dehydrogenase, dimerisation domain J8Z27_14400 PF01118 Semialdehyde dehydrogenase, NAD binding domain J8Z27_14405 PF01546 Peptidase family M20/M25/M40 J8Z27_14405 PF07687 Peptidase dimerisation domain J8Z27_14470 PF01177 Asp/Glu/Hydantoin racemase J8Z27_14480 PF00593 TonB dependent receptor J8Z27_14480 PF07715 TonB-dependent Receptor Plug Domain J8Z27_14485 PF05958 tRNA (Uracil-5-)-methyltransferase J8Z27_14495 PF00440 Bacterial regulatory proteins, tetR family J8Z27_14500 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J8Z27_14500 PF07992 Pyridine nucleotide-disulphide oxidoreductase J8Z27_14505 PF01554 MatE J8Z27_14515 PF00717 Peptidase S24-like J8Z27_14515 PF01726 LexA DNA binding domain J8Z27_14520 PF01219 Prokaryotic diacylglycerol kinase J8Z27_14525 PF01553 Acyltransferase J8Z27_14530 PF01040 UbiA prenyltransferase family J8Z27_14535 PF04345 Chorismate lyase J8Z27_14540 PF03748 Flagellar basal body-associated protein FliL J8Z27_14545 PF01694 Rhomboid family J8Z27_14545 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease J8Z27_14550 PF00581 Rhodanese-like domain J8Z27_14555 PF00140 Sigma-70 factor, region 1.2 J8Z27_14555 PF04542 Sigma-70 region 2 J8Z27_14555 PF04545 Sigma-70, region 4 J8Z27_14560 PF18075 FtsX extracellular domain J8Z27_14565 PF00005 ABC transporter J8Z27_14570 PF00448 SRP54-type protein, GTPase domain J8Z27_14570 PF02881 SRP54-type protein, helical bundle domain J8Z27_14585 PF01914 MarC family integral membrane protein J8Z27_14630 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J8Z27_14630 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J8Z27_14635 PF01022 Bacterial regulatory protein, arsR family J8Z27_14640 PF08668 HDOD domain J8Z27_14640 PF00563 EAL domain J8Z27_14645 PF01810 LysE type translocator J8Z27_14650 PF12146 Serine aminopeptidase, S33 J8Z27_14670 PF03942 DTW domain J8Z27_14675 PF13419 Haloacid dehalogenase-like hydrolase J8Z27_14680 PF00589 Phage integrase family J8Z27_14680 PF02899 Phage integrase, N-terminal SAM-like domain J8Z27_14690 PF01678 Diaminopimelate epimerase J8Z27_14695 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain J8Z27_14695 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J8Z27_14705 PF01491 Frataxin-like domain J8Z27_14710 PF12633 Adenylate cyclase NT domain J8Z27_14710 PF01295 Adenylate cyclase, class-I J8Z27_14715 PF03900 Porphobilinogen deaminase, C-terminal domain J8Z27_14715 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain J8Z27_14720 PF02602 Uroporphyrinogen-III synthase HemD J8Z27_14725 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase J8Z27_14730 PF07219 HemY protein N-terminus J8Z27_14755 PF00175 Oxidoreductase NAD-binding domain J8Z27_14760 PF00175 Oxidoreductase NAD-binding domain J8Z27_14760 PF00111 2Fe-2S iron-sulfur cluster binding domain J8Z27_14760 PF00970 Oxidoreductase FAD-binding domain J8Z27_14765 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase J8Z27_14775 PF07497 Rho termination factor, RNA-binding domain J8Z27_14775 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J8Z27_14775 PF07498 Rho termination factor, N-terminal domain J8Z27_14780 PF00085 Thioredoxin J8Z27_14785 PF00270 DEAD/DEAH box helicase J8Z27_14785 PF00271 Helicase conserved C-terminal domain J8Z27_14790 PF02541 Ppx/GppA phosphatase family J8Z27_14795 PF02592 Putative vitamin uptake transporter J8Z27_14805 PF00570 HRDC domain J8Z27_14805 PF16124 RecQ zinc-binding J8Z27_14805 PF09382 RQC domain J8Z27_14805 PF00271 Helicase conserved C-terminal domain J8Z27_14805 PF00270 DEAD/DEAH box helicase J8Z27_14810 PF00892 EamA-like transporter family J8Z27_14820 PF01810 LysE type translocator J8Z27_14830 PF00580 UvrD/REP helicase N-terminal domain J8Z27_14830 PF13361 UvrD-like helicase C-terminal domain J8Z27_14840 PF05114 Protein of unknown function (DUF692) J8Z27_14855 PF01432 Peptidase family M3 J8Z27_14860 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ J8Z27_14865 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J8Z27_14865 PF07992 Pyridine nucleotide-disulphide oxidoreductase J8Z27_14880 PF01494 FAD binding domain J8Z27_14885 PF03466 LysR substrate binding domain J8Z27_14885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_14890 PF03306 Alpha-acetolactate decarboxylase J8Z27_14895 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J8Z27_14895 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J8Z27_14895 PF00205 Thiamine pyrophosphate enzyme, central domain J8Z27_14910 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J8Z27_14920 PF12833 Helix-turn-helix domain J8Z27_14925 PF07971 Glycosyl hydrolase family 92 J8Z27_14925 PF17678 Glycosyl hydrolase family 92 N-terminal domain J8Z27_14935 PF17678 Glycosyl hydrolase family 92 N-terminal domain J8Z27_14935 PF07971 Glycosyl hydrolase family 92 J8Z27_14945 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J8Z27_14945 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J8Z27_14965 PF00083 Sugar (and other) transporter J8Z27_14985 PF00072 Response regulator receiver domain J8Z27_14985 PF00196 Bacterial regulatory proteins, luxR family J8Z27_15000 PF12911 N-terminal TM domain of oligopeptide transport permease C J8Z27_15000 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_15005 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_15010 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J8Z27_15015 PF00005 ABC transporter J8Z27_15015 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J8Z27_15045 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J8Z27_15050 PF13361 UvrD-like helicase C-terminal domain J8Z27_15050 PF00580 UvrD/REP helicase N-terminal domain J8Z27_15055 PF00440 Bacterial regulatory proteins, tetR family J8Z27_15060 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J8Z27_15065 PF00873 AcrB/AcrD/AcrF family J8Z27_15070 PF04380 Membrane fusogenic activity J8Z27_15075 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain J8Z27_15075 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain J8Z27_15080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_15080 PF03466 LysR substrate binding domain J8Z27_15085 PF06969 HemN C-terminal domain J8Z27_15085 PF04055 Radical SAM superfamily J8Z27_15095 PF04220 Der GTPase activator (YihI) J8Z27_15105 PF00034 Cytochrome c J8Z27_15110 PF01926 50S ribosome-binding GTPase J8Z27_15115 PF01367 5'-3' exonuclease, C-terminal SAM fold J8Z27_15115 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J8Z27_15115 PF00476 DNA polymerase family A J8Z27_15115 PF01612 3'-5' exonuclease J8Z27_15125 PF00490 Delta-aminolevulinic acid dehydratase J8Z27_15130 PF01026 TatD related DNase J8Z27_15135 PF00902 Sec-independent protein translocase protein (TatC) J8Z27_15140 PF02416 mttA/Hcf106 family J8Z27_15145 PF02416 mttA/Hcf106 family J8Z27_15150 PF03109 ABC1 family J8Z27_15155 PF02036 SCP-2 sterol transfer family J8Z27_15160 PF01209 ubiE/COQ5 methyltransferase family J8Z27_15165 PF02646 RmuC family J8Z27_15175 PF08668 HDOD domain J8Z27_15190 PF01117 Aerolysin toxin J8Z27_15190 PF03440 Aerolysin/Pertussis toxin (APT) domain J8Z27_15200 PF10625 Universal stress protein B (UspB) J8Z27_15205 PF00210 Ferritin-like domain J8Z27_15210 PF00582 Universal stress protein family J8Z27_15215 PF00892 EamA-like transporter family J8Z27_15225 PF04445 Putative SAM-dependent methyltransferase J8Z27_15230 PF00563 EAL domain J8Z27_15230 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_15230 PF08448 PAS fold J8Z27_15235 PF01037 Lrp/AsnC ligand binding domain J8Z27_15245 PF07690 Major Facilitator Superfamily J8Z27_15250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_15250 PF03466 LysR substrate binding domain J8Z27_15255 PF00557 Metallopeptidase family M24 J8Z27_15255 PF01321 Creatinase/Prolidase N-terminal domain J8Z27_15255 PF00557 Metallopeptidase family M24 J8Z27_15255 PF01321 Creatinase/Prolidase N-terminal domain J8Z27_15260 PF06968 Biotin and Thiamin Synthesis associated domain J8Z27_15260 PF04055 Radical SAM superfamily J8Z27_15265 PF05690 Thiazole biosynthesis protein ThiG J8Z27_15275 PF00899 ThiF family J8Z27_15280 PF02581 Thiamine monophosphate synthase J8Z27_15285 PF13667 ThiC-associated domain J8Z27_15285 PF01964 Radical SAM ThiC family J8Z27_15290 PF02537 CrcB-like protein, Camphor Resistance (CrcB) J8Z27_15295 PF07732 Multicopper oxidase J8Z27_15295 PF00394 Multicopper oxidase J8Z27_15295 PF07731 Multicopper oxidase J8Z27_15335 PF12724 Flavodoxin domain J8Z27_15340 PF02386 Cation transport protein J8Z27_15345 PF09186 Domain of unknown function (DUF1949) J8Z27_15345 PF01205 Uncharacterized protein family UPF0029 J8Z27_15350 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J8Z27_15350 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J8Z27_15350 PF00378 Enoyl-CoA hydratase/isomerase J8Z27_15355 PF02803 Thiolase, C-terminal domain J8Z27_15355 PF00108 Thiolase, N-terminal domain J8Z27_15360 PF03466 LysR substrate binding domain J8Z27_15360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_15365 PF07690 Major Facilitator Superfamily J8Z27_15370 PF00497 Bacterial extracellular solute-binding proteins, family 3 J8Z27_15375 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_15380 PF00132 Bacterial transferase hexapeptide (six repeats) J8Z27_15380 PF12804 MobA-like NTP transferase domain J8Z27_15385 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain J8Z27_15385 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain J8Z27_15390 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J8Z27_15390 PF02874 ATP synthase alpha/beta family, beta-barrel domain J8Z27_15395 PF00231 ATP synthase J8Z27_15400 PF02874 ATP synthase alpha/beta family, beta-barrel domain J8Z27_15400 PF00306 ATP synthase alpha/beta chain, C terminal domain J8Z27_15400 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J8Z27_15405 PF00213 ATP synthase delta (OSCP) subunit J8Z27_15410 PF00430 ATP synthase B/B' CF(0) J8Z27_15415 PF00137 ATP synthase subunit C J8Z27_15420 PF00119 ATP synthase A chain J8Z27_15425 PF03899 ATP synthase I chain J8Z27_15430 PF17762 HTH domain found in ParB protein J8Z27_15430 PF02195 ParB-like nuclease domain J8Z27_15435 PF13614 AAA domain J8Z27_15440 PF02527 rRNA small subunit methyltransferase G J8Z27_15445 PF01134 Glucose inhibited division protein A J8Z27_15445 PF13932 GidA associated domain J8Z27_15450 PF00258 Flavodoxin J8Z27_15455 PF01926 50S ribosome-binding GTPase J8Z27_15455 PF10396 GTP-binding protein TrmE N-terminus J8Z27_15455 PF12631 MnmE helical domain J8Z27_15460 PF02096 60Kd inner membrane protein J8Z27_15460 PF14849 YidC periplasmic domain J8Z27_15465 PF01809 Putative membrane protein insertion efficiency factor J8Z27_15470 PF00825 Ribonuclease P J8Z27_15475 PF00468 Ribosomal protein L34 J8Z27_15480 PF00005 ABC transporter J8Z27_15485 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_15490 PF00497 Bacterial extracellular solute-binding proteins, family 3 J8Z27_15495 PF18607 ParA helix turn helix domain J8Z27_15495 PF13614 AAA domain J8Z27_15500 PF02195 ParB-like nuclease domain J8Z27_15500 PF08775 ParB family J8Z27_15505 PF13718 GNAT acetyltransferase 2 J8Z27_15505 PF05127 Helicase J8Z27_15515 PF00072 Response regulator receiver domain J8Z27_15520 PF02895 Signal transducing histidine kinase, homodimeric domain J8Z27_15520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_15520 PF01627 Hpt domain J8Z27_15520 PF09078 CheY binding J8Z27_15520 PF01584 CheW-like domain J8Z27_15525 PF01584 CheW-like domain J8Z27_15530 PF01584 CheW-like domain J8Z27_15535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J8Z27_15535 PF02203 Tar ligand binding domain homologue J8Z27_15535 PF00672 HAMP domain J8Z27_15540 PF01739 CheR methyltransferase, SAM binding domain J8Z27_15540 PF03705 CheR methyltransferase, all-alpha domain J8Z27_15545 PF03975 CheD chemotactic sensory transduction J8Z27_15550 PF01339 CheB methylesterase J8Z27_15550 PF00072 Response regulator receiver domain J8Z27_15555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J8Z27_15555 PF02743 Cache domain J8Z27_15555 PF00672 HAMP domain J8Z27_15565 PF00072 Response regulator receiver domain J8Z27_15565 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_15575 PF07690 Major Facilitator Superfamily J8Z27_15585 PF00893 Small Multidrug Resistance protein J8Z27_15590 PF03466 LysR substrate binding domain J8Z27_15590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_15595 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_15600 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_15615 PF13419 Haloacid dehalogenase-like hydrolase J8Z27_15620 PF00005 ABC transporter J8Z27_15620 PF17912 MalK OB fold domain J8Z27_15620 PF03459 TOBE domain J8Z27_15625 PF00582 Universal stress protein family J8Z27_15630 PF00232 Glycosyl hydrolase family 1 J8Z27_15660 PF03466 LysR substrate binding domain J8Z27_15660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_15675 PF08543 Phosphomethylpyrimidine kinase J8Z27_15680 PF03070 TENA/THI-4/PQQC family J8Z27_15695 PF01965 DJ-1/PfpI family J8Z27_15695 PF12833 Helix-turn-helix domain J8Z27_15700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_15700 PF03466 LysR substrate binding domain J8Z27_15710 PF01569 PAP2 superfamily J8Z27_15730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_15730 PF03466 LysR substrate binding domain J8Z27_15740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_15740 PF03466 LysR substrate binding domain J8Z27_15745 PF00109 Beta-ketoacyl synthase, N-terminal domain J8Z27_15745 PF08240 Alcohol dehydrogenase GroES-like domain J8Z27_15745 PF08990 Erythronolide synthase docking J8Z27_15745 PF09277 Erythronolide synthase, docking J8Z27_15745 PF16197 Ketoacyl-synthetase C-terminal extension J8Z27_15745 PF02801 Beta-ketoacyl synthase, C-terminal domain J8Z27_15745 PF00698 Acyl transferase domain J8Z27_15745 PF00550 Phosphopantetheine attachment site J8Z27_15745 PF14765 Polyketide synthase dehydratase J8Z27_15745 PF08659 KR domain J8Z27_15750 PF01042 Endoribonuclease L-PSP J8Z27_15755 PF00892 EamA-like transporter family J8Z27_15790 PF00939 Sodium:sulfate symporter transmembrane region J8Z27_15800 PF07690 Major Facilitator Superfamily J8Z27_15805 PF05221 S-adenosyl-L-homocysteine hydrolase J8Z27_15805 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain J8Z27_15830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_15830 PF03466 LysR substrate binding domain J8Z27_15835 PF01609 Transposase DDE domain J8Z27_15835 PF13006 Insertion element 4 transposase N-terminal J8Z27_15845 PF06029 AlkA N-terminal domain J8Z27_15845 PF00730 HhH-GPD superfamily base excision DNA repair protein J8Z27_15850 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J8Z27_15850 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain J8Z27_15860 PF03600 Citrate transporter J8Z27_15870 PF12833 Helix-turn-helix domain J8Z27_15875 PF07715 TonB-dependent Receptor Plug Domain J8Z27_15875 PF00593 TonB dependent receptor J8Z27_15885 PF00672 HAMP domain J8Z27_15885 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J8Z27_15885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_15885 PF00512 His Kinase A (phospho-acceptor) domain J8Z27_15885 PF01627 Hpt domain J8Z27_15885 PF00072 Response regulator receiver domain J8Z27_15890 PF01979 Amidohydrolase family J8Z27_15900 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain J8Z27_15900 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase J8Z27_15905 PF03450 CO dehydrogenase flavoprotein C-terminal domain J8Z27_15905 PF00941 FAD binding domain in molybdopterin dehydrogenase J8Z27_15910 PF07729 FCD domain J8Z27_15910 PF00392 Bacterial regulatory proteins, gntR family J8Z27_15920 PF01979 Amidohydrolase family J8Z27_15925 PF00082 Subtilase family J8Z27_15925 PF05922 Peptidase inhibitor I9 J8Z27_15925 PF04151 Bacterial pre-peptidase C-terminal domain J8Z27_15930 PF17200 Single Cache domain 2 J8Z27_15930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J8Z27_15930 PF00672 HAMP domain J8Z27_15945 PF10928 Protein of unknown function (DUF2810) J8Z27_15955 PF00583 Acetyltransferase (GNAT) family J8Z27_15960 PF03466 LysR substrate binding domain J8Z27_15960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_15965 PF01609 Transposase DDE domain J8Z27_15965 PF13006 Insertion element 4 transposase N-terminal J8Z27_15970 PF00196 Bacterial regulatory proteins, luxR family J8Z27_15970 PF17874 MalT-like TPR region J8Z27_15975 PF00343 Carbohydrate phosphorylase J8Z27_15980 PF02446 4-alpha-glucanotransferase J8Z27_15985 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J8Z27_15985 PF02806 Alpha amylase, C-terminal all-beta domain J8Z27_15985 PF00128 Alpha amylase, catalytic domain J8Z27_16005 PF00933 Glycosyl hydrolase family 3 N terminal domain J8Z27_16005 PF01915 Glycosyl hydrolase family 3 C-terminal domain J8Z27_16010 PF07075 Protein of unknown function (DUF1343) J8Z27_16025 PF13340 Putative transposase of IS4/5 family (DUF4096) J8Z27_16030 PF03009 Glycerophosphoryl diester phosphodiesterase family J8Z27_16095 PF00005 ABC transporter J8Z27_16095 PF12848 ABC transporter J8Z27_16100 PF08267 Cobalamin-independent synthase, N-terminal domain J8Z27_16100 PF01717 Cobalamin-independent synthase, Catalytic domain J8Z27_16120 PF01638 HxlR-like helix-turn-helix J8Z27_16125 PF00583 Acetyltransferase (GNAT) family J8Z27_16130 PF00202 Aminotransferase class-III J8Z27_16135 PF06339 Ectoine synthase J8Z27_16140 PF13840 ACT domain J8Z27_16140 PF00696 Amino acid kinase family J8Z27_16150 PF00881 Nitroreductase family J8Z27_16155 PF01418 Helix-turn-helix domain, rpiR family J8Z27_16155 PF01380 SIS domain J8Z27_16160 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J8Z27_16165 PF01074 Glycosyl hydrolases family 38 N-terminal domain J8Z27_16165 PF07748 Glycosyl hydrolases family 38 C-terminal domain J8Z27_16165 PF09261 Alpha mannosidase middle domain J8Z27_16170 PF00128 Alpha amylase, catalytic domain J8Z27_16175 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J8Z27_16175 PF02378 Phosphotransferase system, EIIC J8Z27_16175 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J8Z27_16200 PF00490 Delta-aminolevulinic acid dehydratase J8Z27_16205 PF00108 Thiolase, N-terminal domain J8Z27_16205 PF02803 Thiolase, C-terminal domain J8Z27_16215 PF05853 beta-keto acid cleavage enzyme J8Z27_16225 PF01758 Sodium Bile acid symporter family J8Z27_16230 PF13006 Insertion element 4 transposase N-terminal J8Z27_16230 PF01609 Transposase DDE domain J8Z27_16245 PF03466 LysR substrate binding domain J8Z27_16245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_16250 PF01039 Carboxyl transferase domain J8Z27_16250 PF17848 Acetyl-coA carboxylase zinc finger domain J8Z27_16260 PF02028 BCCT, betaine/carnitine/choline family transporter J8Z27_16265 PF00072 Response regulator receiver domain J8Z27_16265 PF00672 HAMP domain J8Z27_16265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_16265 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J8Z27_16265 PF00512 His Kinase A (phospho-acceptor) domain J8Z27_16265 PF01627 Hpt domain J8Z27_16275 PF00795 Carbon-nitrogen hydrolase J8Z27_16280 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J8Z27_16285 PF08241 Methyltransferase domain J8Z27_16305 PF07859 alpha/beta hydrolase fold J8Z27_16315 PF00005 ABC transporter J8Z27_16315 PF00571 CBS domain J8Z27_16320 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_16330 PF12793 Sugar transport-related sRNA regulator N-term J8Z27_16330 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J8Z27_16335 PF00881 Nitroreductase family J8Z27_16340 PF01914 MarC family integral membrane protein J8Z27_16350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_16350 PF03466 LysR substrate binding domain J8Z27_16375 PF00263 Bacterial type II and III secretion system protein J8Z27_16375 PF04972 BON domain J8Z27_16375 PF13629 Pilus formation protein N terminal region J8Z27_16385 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J8Z27_16390 PF00437 Type II/IV secretion system protein J8Z27_16440 PF02424 ApbE family J8Z27_16445 PF11412 Disulphide bond corrector protein DsbC J8Z27_16445 PF02683 Cytochrome C biogenesis protein transmembrane region J8Z27_16450 PF00171 Aldehyde dehydrogenase family J8Z27_16455 PF00672 HAMP domain J8Z27_16455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J8Z27_16455 PF17200 Single Cache domain 2 J8Z27_16460 PF12849 PBP superfamily domain J8Z27_16465 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_16470 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_16475 PF00005 ABC transporter J8Z27_16480 PF00563 EAL domain J8Z27_16480 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_16480 PF03707 Bacterial signalling protein N terminal repeat J8Z27_16490 PF00375 Sodium:dicarboxylate symporter family J8Z27_16495 PF03193 RsgA GTPase J8Z27_16500 PF07238 PilZ domain J8Z27_16500 PF12945 Flagellar protein YcgR J8Z27_16505 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase J8Z27_16525 PF00583 Acetyltransferase (GNAT) family J8Z27_16535 PF07238 PilZ domain J8Z27_16535 PF12945 Flagellar protein YcgR J8Z27_16550 PF13302 Acetyltransferase (GNAT) domain J8Z27_16560 PF00588 SpoU rRNA Methylase family J8Z27_16560 PF08032 RNA 2'-O ribose methyltransferase substrate binding J8Z27_16565 PF11953 Domain of unknown function (DUF3470) J8Z27_16565 PF00037 4Fe-4S binding domain J8Z27_16585 PF13443 Cro/C1-type HTH DNA-binding domain J8Z27_16590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_16590 PF03466 LysR substrate binding domain J8Z27_16595 PF00764 Arginosuccinate synthase J8Z27_16610 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family J8Z27_16630 PF00873 AcrB/AcrD/AcrF family J8Z27_16640 PF07670 Nucleoside recognition J8Z27_16645 PF00111 2Fe-2S iron-sulfur cluster binding domain J8Z27_16645 PF00970 Oxidoreductase FAD-binding domain J8Z27_16645 PF00175 Oxidoreductase NAD-binding domain J8Z27_16650 PF03063 Prismane/CO dehydrogenase family J8Z27_16660 PF03466 LysR substrate binding domain J8Z27_16660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_16675 PF00158 Sigma-54 interaction domain J8Z27_16675 PF01590 GAF domain J8Z27_16680 PF12833 Helix-turn-helix domain J8Z27_16680 PF02311 AraC-like ligand binding domain J8Z27_16705 PF04244 Deoxyribodipyrimidine photo-lyase-related protein J8Z27_16715 PF03992 Antibiotic biosynthesis monooxygenase J8Z27_16720 PF03733 Inner membrane component domain J8Z27_16730 PF00497 Bacterial extracellular solute-binding proteins, family 3 J8Z27_16735 PF00155 Aminotransferase class I and II J8Z27_16740 PF03466 LysR substrate binding domain J8Z27_16740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_16745 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J8Z27_16755 PF07504 Fungalysin/Thermolysin Propeptide Motif J8Z27_16755 PF03413 Peptidase propeptide and YPEB domain J8Z27_16755 PF01447 Thermolysin metallopeptidase, catalytic domain J8Z27_16755 PF02868 Thermolysin metallopeptidase, alpha-helical domain J8Z27_16755 PF04151 Bacterial pre-peptidase C-terminal domain J8Z27_16760 PF04389 Peptidase family M28 J8Z27_16760 PF04151 Bacterial pre-peptidase C-terminal domain J8Z27_16785 PF00909 Ammonium Transporter Family J8Z27_16800 PF04324 BFD-like [2Fe-2S] binding domain J8Z27_16800 PF07992 Pyridine nucleotide-disulphide oxidoreductase J8Z27_16805 PF01266 FAD dependent oxidoreductase J8Z27_16825 PF01476 LysM domain J8Z27_16825 PF01551 Peptidase family M23 J8Z27_16825 PF08525 Opacity-associated protein A N-terminal motif J8Z27_16830 PF03922 OmpW family J8Z27_16840 PF00082 Subtilase family J8Z27_16845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J8Z27_16845 PF00672 HAMP domain J8Z27_16845 PF12729 Four helix bundle sensory module for signal transduction J8Z27_16855 PF00376 MerR family regulatory protein J8Z27_16855 PF09278 MerR, DNA binding J8Z27_16870 PF07690 Major Facilitator Superfamily J8Z27_16875 PF00474 Sodium:solute symporter family J8Z27_16895 PF03358 NADPH-dependent FMN reductase J8Z27_16900 PF00892 EamA-like transporter family J8Z27_16910 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J8Z27_16910 PF11852 Domain of unknown function (DUF3372) J8Z27_16910 PF03714 Bacterial pullanase-associated domain J8Z27_16910 PF18494 Pullulanase Ins domain J8Z27_16910 PF17967 Pullulanase N2 domain J8Z27_16925 PF14489 QueF-like protein J8Z27_16925 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term J8Z27_16930 PF12833 Helix-turn-helix domain J8Z27_16930 PF01497 Periplasmic binding protein J8Z27_16935 PF00155 Aminotransferase class I and II J8Z27_16940 PF00155 Aminotransferase class I and II J8Z27_16940 PF00392 Bacterial regulatory proteins, gntR family J8Z27_16950 PF01037 Lrp/AsnC ligand binding domain J8Z27_16960 PF00672 HAMP domain J8Z27_16960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J8Z27_16965 PF01625 Peptide methionine sulfoxide reductase J8Z27_16965 PF01641 SelR domain J8Z27_16970 PF13599 Pentapeptide repeats (9 copies) J8Z27_16985 PF00563 EAL domain J8Z27_16985 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_16985 PF03707 Bacterial signalling protein N terminal repeat J8Z27_16990 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 J8Z27_17000 PF00873 AcrB/AcrD/AcrF family J8Z27_17005 PF00873 AcrB/AcrD/AcrF family J8Z27_17015 PF13977 BetI-type transcriptional repressor, C-terminal J8Z27_17015 PF00440 Bacterial regulatory proteins, tetR family J8Z27_17030 PF00486 Transcriptional regulatory protein, C terminal J8Z27_17030 PF00072 Response regulator receiver domain J8Z27_17035 PF00512 His Kinase A (phospho-acceptor) domain J8Z27_17035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_17035 PF13426 PAS domain J8Z27_17035 PF00672 HAMP domain J8Z27_17040 PF13673 Acetyltransferase (GNAT) domain J8Z27_17055 PF17149 Periplasmic sensor domain found in signal transduction proteins J8Z27_17055 PF00072 Response regulator receiver domain J8Z27_17055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_17055 PF00512 His Kinase A (phospho-acceptor) domain J8Z27_17055 PF01627 Hpt domain J8Z27_17055 PF00672 HAMP domain J8Z27_17070 PF00206 Lyase J8Z27_17070 PF10415 Fumarase C C-terminus J8Z27_17095 PF00581 Rhodanese-like domain J8Z27_17095 PF17773 UPF0176 acylphosphatase like domain J8Z27_17120 PF00291 Pyridoxal-phosphate dependent enzyme J8Z27_17130 PF00491 Arginase family J8Z27_17135 PF00392 Bacterial regulatory proteins, gntR family J8Z27_17135 PF00155 Aminotransferase class I and II J8Z27_17145 PF07885 Ion channel J8Z27_17165 PF01323 DSBA-like thioredoxin domain J8Z27_17175 PF01638 HxlR-like helix-turn-helix J8Z27_17190 PF03795 YCII-related domain J8Z27_17195 PF08281 Sigma-70, region 4 J8Z27_17195 PF04542 Sigma-70 region 2 J8Z27_17200 PF02798 Glutathione S-transferase, N-terminal domain J8Z27_17205 PF13419 Haloacid dehalogenase-like hydrolase J8Z27_17210 PF00128 Alpha amylase, catalytic domain J8Z27_17230 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J8Z27_17230 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J8Z27_17235 PF00141 Peroxidase J8Z27_17245 PF16884 N-terminal domain of oxidoreductase J8Z27_17245 PF00107 Zinc-binding dehydrogenase J8Z27_17250 PF00440 Bacterial regulatory proteins, tetR family J8Z27_17250 PF16925 Tetracyclin repressor-like, C-terminal domain J8Z27_17255 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_17265 PF04266 ASCH domain J8Z27_17270 PF00271 Helicase conserved C-terminal domain J8Z27_17270 PF00270 DEAD/DEAH box helicase J8Z27_17280 PF01979 Amidohydrolase family J8Z27_17295 PF00356 Bacterial regulatory proteins, lacI family J8Z27_17305 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_17310 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_17315 PF03633 Glycosyl hydrolase family 65, C-terminal domain J8Z27_17315 PF03636 Glycosyl hydrolase family 65, N-terminal domain J8Z27_17315 PF03632 Glycosyl hydrolase family 65 central catalytic domain J8Z27_17320 PF13419 Haloacid dehalogenase-like hydrolase J8Z27_17325 PF08402 TOBE domain J8Z27_17325 PF00005 ABC transporter J8Z27_17335 PF00251 Glycosyl hydrolases family 32 N-terminal domain J8Z27_17335 PF08244 Glycosyl hydrolases family 32 C terminal J8Z27_17340 PF00128 Alpha amylase, catalytic domain J8Z27_17345 PF00356 Bacterial regulatory proteins, lacI family J8Z27_17360 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_17365 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_17370 PF00005 ABC transporter J8Z27_17370 PF17912 MalK OB fold domain J8Z27_17370 PF03459 TOBE domain J8Z27_17375 PF14310 Fibronectin type III-like domain J8Z27_17375 PF00933 Glycosyl hydrolase family 3 N terminal domain J8Z27_17375 PF01915 Glycosyl hydrolase family 3 C-terminal domain J8Z27_17385 PF00128 Alpha amylase, catalytic domain J8Z27_17390 PF14602 Hexapeptide repeat of succinyl-transferase J8Z27_17390 PF12464 Maltose acetyltransferase J8Z27_17415 PF04231 Endonuclease I J8Z27_17430 PF00849 RNA pseudouridylate synthase J8Z27_17440 PF00756 Putative esterase J8Z27_17445 PF00107 Zinc-binding dehydrogenase J8Z27_17445 PF08240 Alcohol dehydrogenase GroES-like domain J8Z27_17450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_17450 PF03466 LysR substrate binding domain J8Z27_17455 PF07690 Major Facilitator Superfamily J8Z27_17470 PF01810 LysE type translocator J8Z27_17475 PF01037 Lrp/AsnC ligand binding domain J8Z27_17480 PF03129 Anticodon binding domain J8Z27_17480 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J8Z27_17480 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J8Z27_17480 PF02824 TGS domain J8Z27_17485 PF05198 Translation initiation factor IF-3, N-terminal domain J8Z27_17485 PF00707 Translation initiation factor IF-3, C-terminal domain J8Z27_17490 PF01632 Ribosomal protein L35 J8Z27_17495 PF00453 Ribosomal protein L20 J8Z27_17500 PF01266 FAD dependent oxidoreductase J8Z27_17520 PF00171 Aldehyde dehydrogenase family J8Z27_17525 PF00158 Sigma-54 interaction domain J8Z27_17525 PF02954 Bacterial regulatory protein, Fis family J8Z27_17525 PF01590 GAF domain J8Z27_17550 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J8Z27_17550 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain J8Z27_17555 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase J8Z27_17560 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain J8Z27_17560 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain J8Z27_17565 PF01966 HD domain J8Z27_17585 PF07690 Major Facilitator Superfamily J8Z27_17590 PF07730 Histidine kinase J8Z27_17590 PF05231 MASE1 J8Z27_17590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_17595 PF00072 Response regulator receiver domain J8Z27_17595 PF00196 Bacterial regulatory proteins, luxR family J8Z27_17600 PF07690 Major Facilitator Superfamily J8Z27_17615 PF01979 Amidohydrolase family J8Z27_17620 PF03473 MOSC domain J8Z27_17620 PF03473 MOSC domain J8Z27_17620 PF03476 MOSC N-terminal beta barrel domain J8Z27_17620 PF00111 2Fe-2S iron-sulfur cluster binding domain J8Z27_17620 PF03476 MOSC N-terminal beta barrel domain J8Z27_17620 PF00111 2Fe-2S iron-sulfur cluster binding domain J8Z27_17625 PF00196 Bacterial regulatory proteins, luxR family J8Z27_17625 PF03472 Autoinducer binding domain J8Z27_17630 PF08220 DeoR-like helix-turn-helix domain J8Z27_17630 PF00455 DeoR C terminal sensor domain J8Z27_17650 PF05661 Protein of unknown function (DUF808) J8Z27_17660 PF00128 Alpha amylase, catalytic domain J8Z27_17665 PF02743 Cache domain J8Z27_17665 PF00672 HAMP domain J8Z27_17665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J8Z27_17685 PF12849 PBP superfamily domain J8Z27_17690 PF01575 MaoC like domain J8Z27_17700 PF08525 Opacity-associated protein A N-terminal motif J8Z27_17700 PF01551 Peptidase family M23 J8Z27_17700 PF01476 LysM domain J8Z27_17710 PF07690 Major Facilitator Superfamily J8Z27_17715 PF00005 ABC transporter J8Z27_17720 PF01032 FecCD transport family J8Z27_17730 PF02472 Biopolymer transport protein ExbD/TolR J8Z27_17735 PF01618 MotA/TolQ/ExbB proton channel family J8Z27_17740 PF03544 Gram-negative bacterial TonB protein C-terminal J8Z27_17745 PF04055 Radical SAM superfamily J8Z27_17750 PF06228 Haem utilisation ChuX/HutX J8Z27_17755 PF01243 Pyridoxamine 5'-phosphate oxidase J8Z27_17760 PF01923 Cobalamin adenosyltransferase J8Z27_17765 PF08402 TOBE domain J8Z27_17765 PF00005 ABC transporter J8Z27_17770 PF01547 Bacterial extracellular solute-binding protein J8Z27_17775 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_17775 PF14785 Maltose transport system permease protein MalF P2 domain J8Z27_17780 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_17790 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J8Z27_17790 PF12793 Sugar transport-related sRNA regulator N-term J8Z27_17815 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J8Z27_17815 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J8Z27_17830 PF00072 Response regulator receiver domain J8Z27_17830 PF00672 HAMP domain J8Z27_17830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_17830 PF00512 His Kinase A (phospho-acceptor) domain J8Z27_17830 PF01627 Hpt domain J8Z27_17830 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J8Z27_17835 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J8Z27_17840 PF03741 Integral membrane protein TerC family J8Z27_17845 PF07969 Amidohydrolase family J8Z27_17850 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin J8Z27_17855 PF00529 HlyD membrane-fusion protein of T1SS J8Z27_17855 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J8Z27_17880 PF00486 Transcriptional regulatory protein, C terminal J8Z27_17880 PF00072 Response regulator receiver domain J8Z27_17885 PF00672 HAMP domain J8Z27_17885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_17885 PF00512 His Kinase A (phospho-acceptor) domain J8Z27_17895 PF00155 Aminotransferase class I and II J8Z27_17895 PF00392 Bacterial regulatory proteins, gntR family J8Z27_17900 PF13230 Glutamine amidotransferases class-II J8Z27_17905 PF13520 Amino acid permease J8Z27_17915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_17915 PF03466 LysR substrate binding domain J8Z27_17925 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J8Z27_17930 PF02566 OsmC-like protein J8Z27_17935 PF01609 Transposase DDE domain J8Z27_17935 PF13006 Insertion element 4 transposase N-terminal J8Z27_17940 PF12464 Maltose acetyltransferase J8Z27_17940 PF14602 Hexapeptide repeat of succinyl-transferase J8Z27_17945 PF00892 EamA-like transporter family J8Z27_17965 PF13519 von Willebrand factor type A domain J8Z27_17965 PF07584 Aerotolerance regulator N-terminal J8Z27_17970 PF07584 Aerotolerance regulator N-terminal J8Z27_17970 PF00092 von Willebrand factor type A domain J8Z27_17980 PF01882 Protein of unknown function DUF58 J8Z27_17985 PF07726 ATPase family associated with various cellular activities (AAA) J8Z27_17985 PF17863 AAA lid domain J8Z27_17990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J8Z27_17990 PF00672 HAMP domain J8Z27_17990 PF02743 Cache domain J8Z27_18010 PF18719 ArlS sensor domain J8Z27_18010 PF00512 His Kinase A (phospho-acceptor) domain J8Z27_18010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_18015 PF00486 Transcriptional regulatory protein, C terminal J8Z27_18015 PF00072 Response regulator receiver domain J8Z27_18020 PF03150 Di-haem cytochrome c peroxidase J8Z27_18025 PF00486 Transcriptional regulatory protein, C terminal J8Z27_18025 PF00072 Response regulator receiver domain J8Z27_18030 PF00672 HAMP domain J8Z27_18030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_18030 PF00512 His Kinase A (phospho-acceptor) domain J8Z27_18035 PF06123 Inner membrane protein CreD J8Z27_18040 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J8Z27_18045 PF03466 LysR substrate binding domain J8Z27_18045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_18050 PF00155 Aminotransferase class I and II J8Z27_18055 PF00107 Zinc-binding dehydrogenase J8Z27_18055 PF08240 Alcohol dehydrogenase GroES-like domain J8Z27_18060 PF00194 Eukaryotic-type carbonic anhydrase J8Z27_18070 PF01773 Na+ dependent nucleoside transporter N-terminus J8Z27_18070 PF07662 Na+ dependent nucleoside transporter C-terminus J8Z27_18070 PF07670 Nucleoside recognition J8Z27_18075 PF07687 Peptidase dimerisation domain J8Z27_18075 PF01546 Peptidase family M20/M25/M40 J8Z27_18100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_18100 PF00512 His Kinase A (phospho-acceptor) domain J8Z27_18100 PF09456 RcsC Alpha-Beta-Loop (ABL) J8Z27_18100 PF00072 Response regulator receiver domain J8Z27_18105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_18105 PF00512 His Kinase A (phospho-acceptor) domain J8Z27_18105 PF09456 RcsC Alpha-Beta-Loop (ABL) J8Z27_18105 PF00072 Response regulator receiver domain J8Z27_18110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_18110 PF00672 HAMP domain J8Z27_18110 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J8Z27_18110 PF00512 His Kinase A (phospho-acceptor) domain J8Z27_18110 PF01627 Hpt domain J8Z27_18110 PF00072 Response regulator receiver domain J8Z27_18120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_18120 PF03466 LysR substrate binding domain J8Z27_18130 PF13193 AMP-binding enzyme C-terminal domain J8Z27_18130 PF00501 AMP-binding enzyme J8Z27_18135 PF00351 Biopterin-dependent aromatic amino acid hydroxylase J8Z27_18140 PF01329 Pterin 4 alpha carbinolamine dehydratase J8Z27_18175 PF07549 SecD/SecF GG Motif J8Z27_18175 PF13721 SecD export protein N-terminal TM region J8Z27_18175 PF02355 Protein export membrane protein J8Z27_18180 PF07549 SecD/SecF GG Motif J8Z27_18180 PF02355 Protein export membrane protein J8Z27_18205 PF00465 Iron-containing alcohol dehydrogenase J8Z27_18220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_18220 PF03466 LysR substrate binding domain J8Z27_18225 PF13419 Haloacid dehalogenase-like hydrolase J8Z27_18250 PF13419 Haloacid dehalogenase-like hydrolase J8Z27_18255 PF00202 Aminotransferase class-III J8Z27_18260 PF00266 Aminotransferase class-V J8Z27_18270 PF00005 ABC transporter J8Z27_18275 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_18280 PF00392 Bacterial regulatory proteins, gntR family J8Z27_18280 PF07702 UTRA domain J8Z27_18295 PF00246 Zinc carboxypeptidase J8Z27_18295 PF18027 Cytosolic carboxypeptidase N-terminal domain J8Z27_18300 PF01266 FAD dependent oxidoreductase J8Z27_18305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_18305 PF03466 LysR substrate binding domain J8Z27_18310 PF03313 Serine dehydratase alpha chain J8Z27_18310 PF03315 Serine dehydratase beta chain J8Z27_18330 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_18335 PF01584 CheW-like domain J8Z27_18335 PF00072 Response regulator receiver domain J8Z27_18350 PF08329 Chitinase A, N-terminal domain J8Z27_18350 PF00704 Glycosyl hydrolases family 18 J8Z27_18360 PF01212 Beta-eliminating lyase J8Z27_18365 PF00293 NUDIX domain J8Z27_18370 PF07728 AAA domain (dynein-related subfamily) J8Z27_18370 PF17868 AAA lid domain J8Z27_18370 PF12592 Protein of unknown function (DUF3763) J8Z27_18375 PF05762 VWA domain containing CoxE-like protein J8Z27_18390 PF01037 Lrp/AsnC ligand binding domain J8Z27_18395 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_18395 PF08448 PAS fold J8Z27_18400 PF01047 MarR family J8Z27_18405 PF02028 BCCT, betaine/carnitine/choline family transporter J8Z27_18420 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J8Z27_18425 PF00873 AcrB/AcrD/AcrF family J8Z27_18430 PF00291 Pyridoxal-phosphate dependent enzyme J8Z27_18450 PF03222 Tryptophan/tyrosine permease family J8Z27_18455 PF04336 Acyl carrier protein phosphodiesterase J8Z27_18460 PF00270 DEAD/DEAH box helicase J8Z27_18460 PF00271 Helicase conserved C-terminal domain J8Z27_18465 PF00672 HAMP domain J8Z27_18465 PF12729 Four helix bundle sensory module for signal transduction J8Z27_18465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J8Z27_18470 PF13419 Haloacid dehalogenase-like hydrolase J8Z27_18475 PF00294 pfkB family carbohydrate kinase J8Z27_18490 PF13419 Haloacid dehalogenase-like hydrolase J8Z27_18505 PF00384 Molybdopterin oxidoreductase J8Z27_18505 PF01568 Molydopterin dinucleotide binding domain J8Z27_18505 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J8Z27_18510 PF10414 Sirohaem synthase dimerisation region J8Z27_18510 PF14824 Sirohaem biosynthesis protein central J8Z27_18510 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J8Z27_18515 PF02885 Glycosyl transferase family, helical bundle domain J8Z27_18515 PF00591 Glycosyl transferase family, a/b domain J8Z27_18520 PF03861 ANTAR domain J8Z27_18520 PF00072 Response regulator receiver domain J8Z27_18525 PF00005 ABC transporter J8Z27_18530 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_18535 PF00005 ABC transporter J8Z27_18540 PF18267 Rubredoxin NAD+ reductase C-terminal domain J8Z27_18540 PF13806 Rieske-like [2Fe-2S] domain J8Z27_18540 PF07992 Pyridine nucleotide-disulphide oxidoreductase J8Z27_18540 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain J8Z27_18540 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J8Z27_18540 PF04324 BFD-like [2Fe-2S] binding domain J8Z27_18545 PF00355 Rieske [2Fe-2S] domain J8Z27_18550 PF03150 Di-haem cytochrome c peroxidase J8Z27_18565 PF11756 Nitrous oxide-stimulated promoter J8Z27_18570 PF07690 Major Facilitator Superfamily J8Z27_18575 PF00085 Thioredoxin J8Z27_18580 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J8Z27_18580 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J8Z27_18585 PF00149 Calcineurin-like phosphoesterase J8Z27_18585 PF12320 Type 5 capsule protein repressor C-terminal domain J8Z27_18590 PF13476 AAA domain J8Z27_18595 PF00072 Response regulator receiver domain J8Z27_18595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_18600 PF00155 Aminotransferase class I and II J8Z27_18610 PF00654 Voltage gated chloride channel J8Z27_18615 PF07683 Cobalamin synthesis protein cobW C-terminal domain J8Z27_18615 PF02492 CobW/HypB/UreG, nucleotide-binding domain J8Z27_18620 PF01926 50S ribosome-binding GTPase J8Z27_18630 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_18635 PF00672 HAMP domain J8Z27_18635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J8Z27_18645 PF01037 Lrp/AsnC ligand binding domain J8Z27_18645 PF13404 AsnC-type helix-turn-helix domain J8Z27_18665 PF00107 Zinc-binding dehydrogenase J8Z27_18665 PF08240 Alcohol dehydrogenase GroES-like domain J8Z27_18670 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J8Z27_18670 PF02378 Phosphotransferase system, EIIC J8Z27_18675 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J8Z27_18680 PF00456 Transketolase, thiamine diphosphate binding domain J8Z27_18680 PF02779 Transketolase, pyrimidine binding domain J8Z27_18680 PF02780 Transketolase, C-terminal domain J8Z27_18685 PF00923 Transaldolase/Fructose-6-phosphate aldolase J8Z27_18695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_18695 PF03466 LysR substrate binding domain J8Z27_18710 PF00581 Rhodanese-like domain J8Z27_18715 PF00899 ThiF family J8Z27_18720 PF03454 MoeA C-terminal region (domain IV) J8Z27_18720 PF00994 Probable molybdopterin binding domain J8Z27_18720 PF03453 MoeA N-terminal region (domain I and II) J8Z27_18725 PF01227 GTP cyclohydrolase I J8Z27_18730 PF00271 Helicase conserved C-terminal domain J8Z27_18730 PF00270 DEAD/DEAH box helicase J8Z27_18730 PF03880 DbpA RNA binding domain J8Z27_18735 PF01641 SelR domain J8Z27_18735 PF01625 Peptide methionine sulfoxide reductase J8Z27_18765 PF13340 Putative transposase of IS4/5 family (DUF4096) J8Z27_18770 PF01081 KDPG and KHG aldolase J8Z27_18775 PF02142 MGS-like domain J8Z27_18780 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family J8Z27_18785 PF00072 Response regulator receiver domain J8Z27_18785 PF00512 His Kinase A (phospho-acceptor) domain J8Z27_18785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_18785 PF01627 Hpt domain J8Z27_18785 PF00672 HAMP domain J8Z27_18795 PF00465 Iron-containing alcohol dehydrogenase J8Z27_18800 PF06719 AraC-type transcriptional regulator N-terminus J8Z27_18800 PF12833 Helix-turn-helix domain J8Z27_18805 PF00483 Nucleotidyl transferase J8Z27_18810 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_18815 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J8Z27_18815 PF02378 Phosphotransferase system, EIIC J8Z27_18820 PF00294 pfkB family carbohydrate kinase J8Z27_18825 PF00381 PTS HPr component phosphorylation site J8Z27_18825 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J8Z27_18830 PF00356 Bacterial regulatory proteins, lacI family J8Z27_18830 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family J8Z27_18845 PF07685 CobB/CobQ-like glutamine amidotransferase domain J8Z27_18845 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J8Z27_18855 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_18860 PF03459 TOBE domain J8Z27_18860 PF00005 ABC transporter J8Z27_18870 PF01590 GAF domain J8Z27_18870 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_18870 PF00360 Phytochrome region J8Z27_18870 PF00563 EAL domain J8Z27_18875 PF07694 5TMR of 5TMR-LYT J8Z27_18875 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_18890 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch J8Z27_18890 PF01262 Alanine dehydrogenase/PNT, C-terminal domain J8Z27_18890 PF05222 Alanine dehydrogenase/PNT, N-terminal domain J8Z27_18895 PF02233 NAD(P) transhydrogenase beta subunit J8Z27_18905 PF00072 Response regulator receiver domain J8Z27_18905 PF00486 Transcriptional regulatory protein, C terminal J8Z27_18920 PF03701 Uncharacterised protein family (UPF0181) J8Z27_18935 PF02463 RecF/RecN/SMC N terminal domain J8Z27_18975 PF01253 Translation initiation factor SUI1 J8Z27_18990 PF07478 D-ala D-ala ligase C-terminus J8Z27_18990 PF01820 D-ala D-ala ligase N-terminus J8Z27_18995 PF05036 Sporulation related domain J8Z27_19000 PF13607 Succinyl-CoA ligase like flavodoxin domain J8Z27_19000 PF00583 Acetyltransferase (GNAT) family J8Z27_19000 PF13380 CoA binding domain J8Z27_19005 PF03466 LysR substrate binding domain J8Z27_19005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_19010 PF00593 TonB dependent receptor J8Z27_19010 PF07715 TonB-dependent Receptor Plug Domain J8Z27_19015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J8Z27_19015 PF12729 Four helix bundle sensory module for signal transduction J8Z27_19015 PF00672 HAMP domain J8Z27_19020 PF00676 Dehydrogenase E1 component J8Z27_19025 PF02780 Transketolase, C-terminal domain J8Z27_19025 PF02779 Transketolase, pyrimidine binding domain J8Z27_19030 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J8Z27_19030 PF00364 Biotin-requiring enzyme J8Z27_19030 PF02817 e3 binding domain J8Z27_19035 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_19040 PF00766 Electron transfer flavoprotein FAD-binding domain J8Z27_19040 PF01012 Electron transfer flavoprotein domain J8Z27_19045 PF01012 Electron transfer flavoprotein domain J8Z27_19055 PF00127 Copper binding proteins, plastocyanin/azurin family J8Z27_19065 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J8Z27_19065 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J8Z27_19070 PF00378 Enoyl-CoA hydratase/isomerase J8Z27_19075 PF00378 Enoyl-CoA hydratase/isomerase J8Z27_19080 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J8Z27_19080 PF02770 Acyl-CoA dehydrogenase, middle domain J8Z27_19080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J8Z27_19085 PF00171 Aldehyde dehydrogenase family J8Z27_19090 PF00108 Thiolase, N-terminal domain J8Z27_19090 PF02803 Thiolase, C-terminal domain J8Z27_19095 PF09278 MerR, DNA binding J8Z27_19095 PF00376 MerR family regulatory protein J8Z27_19100 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J8Z27_19100 PF02770 Acyl-CoA dehydrogenase, middle domain J8Z27_19100 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J8Z27_19105 PF01039 Carboxyl transferase domain J8Z27_19110 PF00378 Enoyl-CoA hydratase/isomerase J8Z27_19115 PF00682 HMGL-like J8Z27_19135 PF01810 LysE type translocator J8Z27_19140 PF07681 DoxX J8Z27_19145 PF17954 Quercetinase C-terminal cupin domain J8Z27_19145 PF02678 Pirin J8Z27_19155 PF01235 Sodium:alanine symporter family J8Z27_19160 PF03466 LysR substrate binding domain J8Z27_19160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_19165 PF13460 NAD(P)H-binding J8Z27_19175 PF18416 N-acetylglucosamine binding protein domain 2 J8Z27_19175 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading J8Z27_19195 PF00529 HlyD membrane-fusion protein of T1SS J8Z27_19200 PF00005 ABC transporter J8Z27_19200 PF00664 ABC transporter transmembrane region J8Z27_19205 PF00005 ABC transporter J8Z27_19225 PF00871 Acetokinase family J8Z27_19230 PF00563 EAL domain J8Z27_19230 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_19230 PF03707 Bacterial signalling protein N terminal repeat J8Z27_19235 PF13411 MerR HTH family regulatory protein J8Z27_19245 PF14579 Helix-hairpin-helix motif J8Z27_19245 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J8Z27_19245 PF07733 Bacterial DNA polymerase III alpha NTPase domain J8Z27_19245 PF02811 PHP domain J8Z27_19245 PF00929 Exonuclease J8Z27_19255 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J8Z27_19255 PF12793 Sugar transport-related sRNA regulator N-term J8Z27_19265 PF03061 Thioesterase superfamily J8Z27_19270 PF01435 Peptidase family M48 J8Z27_19300 PF03741 Integral membrane protein TerC family J8Z27_19305 PF00149 Calcineurin-like phosphoesterase J8Z27_19305 PF02872 5'-nucleotidase, C-terminal domain J8Z27_19310 PF11398 Protein of unknown function (DUF2813) J8Z27_19315 PF06496 Protein of unknown function (DUF1097) J8Z27_19320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_19320 PF03466 LysR substrate binding domain J8Z27_19325 PF01226 Formate/nitrite transporter J8Z27_19330 PF04264 YceI-like domain J8Z27_19335 PF01292 Prokaryotic cytochrome b561 J8Z27_19355 PF03606 C4-dicarboxylate anaerobic carrier J8Z27_19360 PF00196 Bacterial regulatory proteins, luxR family J8Z27_19360 PF00072 Response regulator receiver domain J8Z27_19365 PF00672 HAMP domain J8Z27_19365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_19365 PF07730 Histidine kinase J8Z27_19365 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term J8Z27_19370 PF12838 4Fe-4S dicluster domain J8Z27_19370 PF13187 4Fe-4S dicluster domain J8Z27_19380 PF01568 Molydopterin dinucleotide binding domain J8Z27_19380 PF00384 Molybdopterin oxidoreductase J8Z27_19380 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J8Z27_19385 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) J8Z27_19390 PF03264 NapC/NirT cytochrome c family, N-terminal region J8Z27_19400 PF16363 GDP-mannose 4,6 dehydratase J8Z27_19405 PF03746 LamB/YcsF family J8Z27_19415 PF02626 Carboxyltransferase domain, subdomain A and B J8Z27_19430 PF00005 ABC transporter J8Z27_19435 PF13472 GDSL-like Lipase/Acylhydrolase family J8Z27_19440 PF07055 Enoyl reductase FAD binding domain J8Z27_19440 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase J8Z27_19440 PF12241 Trans-2-enoyl-CoA reductase catalytic region J8Z27_19445 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_19445 PF00498 FHA domain J8Z27_19445 PF00563 EAL domain J8Z27_19455 PF00226 DnaJ domain J8Z27_19455 PF01556 DnaJ C terminal domain J8Z27_19455 PF00684 DnaJ central domain J8Z27_19470 PF03091 CutA1 divalent ion tolerance protein J8Z27_19475 PF12462 DNA helicase IV / RNA helicase N terminal J8Z27_19475 PF00580 UvrD/REP helicase N-terminal domain J8Z27_19475 PF13361 UvrD-like helicase C-terminal domain J8Z27_19480 PF12805 FUSC-like inner membrane protein yccS J8Z27_19500 PF01266 FAD dependent oxidoreductase J8Z27_19500 PF16901 C-terminal domain of alpha-glycerophosphate oxidase J8Z27_19510 PF00072 Response regulator receiver domain J8Z27_19510 PF09308 LuxQ, periplasmic J8Z27_19510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_19510 PF00512 His Kinase A (phospho-acceptor) domain J8Z27_19515 PF13407 Periplasmic binding protein domain J8Z27_19525 PF01541 GIY-YIG catalytic domain J8Z27_19530 PF04337 Protein of unknown function, DUF480 J8Z27_19540 PF04363 Protein of unknown function (DUF496) J8Z27_19550 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J8Z27_19550 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J8Z27_19555 PF00230 Major intrinsic protein J8Z27_19560 PF01266 FAD dependent oxidoreductase J8Z27_19560 PF04324 BFD-like [2Fe-2S] binding domain J8Z27_19565 PF00890 FAD binding domain J8Z27_19570 PF02754 Cysteine-rich domain J8Z27_19570 PF13183 4Fe-4S dicluster domain J8Z27_19590 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J8Z27_19590 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J8Z27_19600 PF08443 RimK-like ATP-grasp domain J8Z27_19600 PF18030 RimK PreATP-grasp domain J8Z27_19605 PF00155 Aminotransferase class I and II J8Z27_19615 PF13597 Anaerobic ribonucleoside-triphosphate reductase J8Z27_19615 PF03477 ATP cone domain J8Z27_19625 PF04143 Sulphur transport J8Z27_19645 PF05547 Immune inhibitor A peptidase M6 J8Z27_19645 PF00801 PKD domain J8Z27_19650 PF00657 GDSL-like Lipase/Acylhydrolase J8Z27_19655 PF07690 Major Facilitator Superfamily J8Z27_19660 PF01177 Asp/Glu/Hydantoin racemase J8Z27_19665 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus J8Z27_19665 PF00561 alpha/beta hydrolase fold J8Z27_19675 PF00108 Thiolase, N-terminal domain J8Z27_19675 PF02803 Thiolase, C-terminal domain J8Z27_19680 PF00106 short chain dehydrogenase J8Z27_19685 PF00440 Bacterial regulatory proteins, tetR family J8Z27_19685 PF08361 MAATS-type transcriptional repressor, C-terminal region J8Z27_19695 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE J8Z27_19725 PF01037 Lrp/AsnC ligand binding domain J8Z27_19735 PF05947 Type VI secretion system, TssF J8Z27_19745 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath J8Z27_19760 PF00069 Protein kinase domain J8Z27_19760 PF03793 PASTA domain J8Z27_19785 PF04717 Type VI secretion system, phage-baseplate injector J8Z27_19790 PF05638 Type VI secretion system effector, Hcp J8Z27_19795 PF10431 C-terminal, D2-small domain, of ClpB protein J8Z27_19795 PF17871 AAA lid domain J8Z27_19795 PF07724 AAA domain (Cdc48 subfamily) J8Z27_19795 PF00004 ATPase family associated with various cellular activities (AAA) J8Z27_19800 PF01590 GAF domain J8Z27_19800 PF02954 Bacterial regulatory protein, Fis family J8Z27_19800 PF00158 Sigma-54 interaction domain J8Z27_19805 PF00691 OmpA family J8Z27_19805 PF05736 OprF membrane domain J8Z27_19830 PF01476 LysM domain J8Z27_19830 PF01551 Peptidase family M23 J8Z27_19830 PF08525 Opacity-associated protein A N-terminal motif J8Z27_19840 PF17200 Single Cache domain 2 J8Z27_19840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J8Z27_19840 PF00672 HAMP domain J8Z27_19850 PF08774 VRR-NUC domain J8Z27_19850 PF18081 Fanconi anemia-associated nuclease SAP domain J8Z27_19865 PF01268 Formate--tetrahydrofolate ligase J8Z27_19885 PF03707 Bacterial signalling protein N terminal repeat J8Z27_19885 PF00563 EAL domain J8Z27_19885 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_19890 PF00072 Response regulator receiver domain J8Z27_19890 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_19895 PF00005 ABC transporter J8Z27_19895 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J8Z27_19900 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_19900 PF12911 N-terminal TM domain of oligopeptide transport permease C J8Z27_19905 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_19910 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J8Z27_19920 PF17200 Single Cache domain 2 J8Z27_19920 PF00672 HAMP domain J8Z27_19920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J8Z27_19925 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J8Z27_19925 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J8Z27_19930 PF13654 AAA domain J8Z27_19930 PF05362 Lon protease (S16) C-terminal proteolytic domain J8Z27_19940 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J8Z27_19940 PF00005 ABC transporter J8Z27_19945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_19945 PF03466 LysR substrate binding domain J8Z27_19950 PF02652 L-lactate permease J8Z27_19955 PF01070 FMN-dependent dehydrogenase J8Z27_19970 PF00005 ABC transporter J8Z27_19970 PF00571 CBS domain J8Z27_19975 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_19980 PF04069 Substrate binding domain of ABC-type glycine betaine transport system J8Z27_19985 PF00732 GMC oxidoreductase J8Z27_19985 PF05199 GMC oxidoreductase J8Z27_19990 PF00171 Aldehyde dehydrogenase family J8Z27_19995 PF13977 BetI-type transcriptional repressor, C-terminal J8Z27_19995 PF00440 Bacterial regulatory proteins, tetR family J8Z27_20005 PF02627 Carboxymuconolactone decarboxylase family J8Z27_20010 PF02525 Flavodoxin-like fold J8Z27_20015 PF00155 Aminotransferase class I and II J8Z27_20015 PF00392 Bacterial regulatory proteins, gntR family J8Z27_20025 PF12792 CSS motif domain associated with EAL J8Z27_20025 PF00563 EAL domain J8Z27_20030 PF12852 Cupin J8Z27_20030 PF12833 Helix-turn-helix domain J8Z27_20035 PF07690 Major Facilitator Superfamily J8Z27_20040 PF03466 LysR substrate binding domain J8Z27_20040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_20045 PF04794 YdjC-like protein J8Z27_20050 PF03473 MOSC domain J8Z27_20050 PF00111 2Fe-2S iron-sulfur cluster binding domain J8Z27_20050 PF03476 MOSC N-terminal beta barrel domain J8Z27_20055 PF00512 His Kinase A (phospho-acceptor) domain J8Z27_20055 PF01627 Hpt domain J8Z27_20055 PF00497 Bacterial extracellular solute-binding proteins, family 3 J8Z27_20055 PF00989 PAS fold J8Z27_20055 PF00072 Response regulator receiver domain J8Z27_20055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_20065 PF00934 PE family J8Z27_20065 PF07859 alpha/beta hydrolase fold J8Z27_20070 PF03466 LysR substrate binding domain J8Z27_20070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_20075 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg J8Z27_20075 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase J8Z27_20075 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II J8Z27_20080 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J8Z27_20085 PF00132 Bacterial transferase hexapeptide (six repeats) J8Z27_20090 PF00144 Beta-lactamase J8Z27_20105 PF00196 Bacterial regulatory proteins, luxR family J8Z27_20105 PF00072 Response regulator receiver domain J8Z27_20120 PF00478 IMP dehydrogenase / GMP reductase domain J8Z27_20125 PF01256 Carbohydrate kinase J8Z27_20125 PF03853 YjeF-related protein N-terminus J8Z27_20140 PF00072 Response regulator receiver domain J8Z27_20145 PF00512 His Kinase A (phospho-acceptor) domain J8Z27_20145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_20145 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J8Z27_20145 PF00672 HAMP domain J8Z27_20145 PF00072 Response regulator receiver domain J8Z27_20145 PF01627 Hpt domain J8Z27_20155 PF13581 Histidine kinase-like ATPase domain J8Z27_20165 PF08678 Rsbr N terminal J8Z27_20165 PF01740 STAS domain J8Z27_20170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J8Z27_20170 PF08447 PAS fold J8Z27_20190 PF08206 Ribonuclease B OB domain J8Z27_20190 PF00773 RNB domain J8Z27_20190 PF00575 S1 RNA binding domain J8Z27_20195 PF00271 Helicase conserved C-terminal domain J8Z27_20195 PF00270 DEAD/DEAH box helicase J8Z27_20195 PF03880 DbpA RNA binding domain J8Z27_20205 PF00497 Bacterial extracellular solute-binding proteins, family 3 J8Z27_20205 PF00512 His Kinase A (phospho-acceptor) domain J8Z27_20205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_20210 PF11849 Domain of unknown function (DUF3369) J8Z27_20215 PF00356 Bacterial regulatory proteins, lacI family J8Z27_20220 PF00294 pfkB family carbohydrate kinase J8Z27_20225 PF13407 Periplasmic binding protein domain J8Z27_20230 PF02653 Branched-chain amino acid transport system / permease component J8Z27_20235 PF00005 ABC transporter J8Z27_20240 PF05025 RbsD / FucU transport protein family J8Z27_20255 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J8Z27_20255 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J8Z27_20255 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J8Z27_20260 PF00909 Ammonium Transporter Family J8Z27_20285 PF00155 Aminotransferase class I and II J8Z27_20285 PF00392 Bacterial regulatory proteins, gntR family J8Z27_20320 PF04151 Bacterial pre-peptidase C-terminal domain J8Z27_20320 PF01447 Thermolysin metallopeptidase, catalytic domain J8Z27_20320 PF03413 Peptidase propeptide and YPEB domain J8Z27_20320 PF07504 Fungalysin/Thermolysin Propeptide Motif J8Z27_20320 PF02868 Thermolysin metallopeptidase, alpha-helical domain J8Z27_20335 PF00356 Bacterial regulatory proteins, lacI family J8Z27_20335 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family J8Z27_20340 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain J8Z27_20340 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J8Z27_20345 PF01202 Shikimate kinase J8Z27_20350 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J8Z27_20350 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component J8Z27_20360 PF03480 Bacterial extracellular solute-binding protein, family 7 J8Z27_20370 PF00563 EAL domain J8Z27_20370 PF03707 Bacterial signalling protein N terminal repeat J8Z27_20370 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_20385 PF03466 LysR substrate binding domain J8Z27_20385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_20390 PF00563 EAL domain J8Z27_20390 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_20400 PF06865 Pyrimidine/purine nucleoside phosphorylase J8Z27_20410 PF00924 Mechanosensitive ion channel J8Z27_20420 PF12706 Beta-lactamase superfamily domain J8Z27_20430 PF02397 Bacterial sugar transferase J8Z27_20440 PF10531 SLBB domain J8Z27_20440 PF02563 Polysaccharide biosynthesis/export protein J8Z27_20440 PF18412 Outer-membrane lipoprotein Wza C-terminal domain J8Z27_20445 PF13614 AAA domain J8Z27_20445 PF02706 Chain length determinant protein J8Z27_20445 PF13807 G-rich domain on putative tyrosine kinase J8Z27_20470 PF00578 AhpC/TSA family J8Z27_20475 PF02683 Cytochrome C biogenesis protein transmembrane region J8Z27_20475 PF11412 Disulphide bond corrector protein DsbC J8Z27_20485 PF00583 Acetyltransferase (GNAT) family J8Z27_20490 PF01810 LysE type translocator J8Z27_20510 PF01557 Fumarylacetoacetate (FAA) hydrolase family J8Z27_20520 PF00012 Hsp70 protein J8Z27_20525 PF03466 LysR substrate binding domain J8Z27_20525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_20535 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J8Z27_20535 PF13378 Enolase C-terminal domain-like J8Z27_20545 PF00563 EAL domain J8Z27_20545 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_20550 PF13458 Periplasmic binding protein J8Z27_20555 PF17151 Periplasmic sensor domain J8Z27_20555 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_20565 PF04389 Peptidase family M28 J8Z27_20565 PF02225 PA domain J8Z27_20570 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J8Z27_20570 PF17999 Pullulanase N1-terminal domain J8Z27_20570 PF00128 Alpha amylase, catalytic domain J8Z27_20585 PF01810 LysE type translocator J8Z27_20590 PF04397 LytTr DNA-binding domain J8Z27_20590 PF00072 Response regulator receiver domain J8Z27_20595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_20595 PF07694 5TMR of 5TMR-LYT J8Z27_20595 PF06580 Histidine kinase J8Z27_20610 PF02687 FtsX-like permease family J8Z27_20610 PF12704 MacB-like periplasmic core domain J8Z27_20615 PF00005 ABC transporter J8Z27_20630 PF00171 Aldehyde dehydrogenase family J8Z27_20640 PF03466 LysR substrate binding domain J8Z27_20640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_20645 PF17151 Periplasmic sensor domain J8Z27_20645 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_20650 PF02525 Flavodoxin-like fold J8Z27_20660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_20660 PF03466 LysR substrate binding domain J8Z27_20670 PF12843 Putative quorum-sensing-regulated virulence factor J8Z27_20685 PF07943 Penicillin-binding protein 5, C-terminal domain J8Z27_20685 PF00768 D-alanyl-D-alanine carboxypeptidase J8Z27_20700 PF03889 Alternative ribosome-rescue factor A J8Z27_20705 PF00313 'Cold-shock' DNA-binding domain J8Z27_20720 PF00970 Oxidoreductase FAD-binding domain J8Z27_20720 PF00175 Oxidoreductase NAD-binding domain J8Z27_20720 PF00042 Globin J8Z27_20725 PF01590 GAF domain J8Z27_20725 PF00158 Sigma-54 interaction domain J8Z27_20740 PF02525 Flavodoxin-like fold J8Z27_20745 PF00999 Sodium/hydrogen exchanger family J8Z27_20745 PF02254 TrkA-N domain J8Z27_20750 PF01554 MatE J8Z27_20755 PF00892 EamA-like transporter family J8Z27_20760 PF00462 Glutaredoxin J8Z27_20775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_20775 PF03466 LysR substrate binding domain J8Z27_20780 PF08448 PAS fold J8Z27_20780 PF00563 EAL domain J8Z27_20780 PF08447 PAS fold J8Z27_20780 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_20795 PF02540 NAD synthase J8Z27_20800 PF00196 Bacterial regulatory proteins, luxR family J8Z27_20815 PF01571 Aminomethyltransferase folate-binding domain J8Z27_20815 PF08669 Glycine cleavage T-protein C-terminal barrel domain J8Z27_20825 PF00464 Serine hydroxymethyltransferase J8Z27_20830 PF01597 Glycine cleavage H-protein J8Z27_20835 PF02347 Glycine cleavage system P-protein J8Z27_20865 PF00664 ABC transporter transmembrane region J8Z27_20865 PF00005 ABC transporter J8Z27_20870 PF00582 Universal stress protein family J8Z27_20880 PF13244 Domain of unknown function (DUF4040) J8Z27_20880 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter J8Z27_20880 PF00361 Proton-conducting membrane transporter J8Z27_20880 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J8Z27_20885 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L J8Z27_20890 PF00361 Proton-conducting membrane transporter J8Z27_20895 PF01899 Na+/H+ ion antiporter subunit J8Z27_20900 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) J8Z27_20905 PF03334 Na+/H+ antiporter subunit J8Z27_20930 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J8Z27_20930 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J8Z27_20935 PF01810 LysE type translocator J8Z27_20945 PF05995 Cysteine dioxygenase type I J8Z27_20950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J8Z27_20950 PF12729 Four helix bundle sensory module for signal transduction J8Z27_20950 PF00672 HAMP domain J8Z27_20955 PF00672 HAMP domain J8Z27_20955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J8Z27_20955 PF17200 Single Cache domain 2 J8Z27_20965 PF02264 LamB porin J8Z27_20970 PF00128 Alpha amylase, catalytic domain J8Z27_20970 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J8Z27_20980 PF12561 ToxR activated gene A lipoprotein domain J8Z27_20980 PF17945 Beta/Gamma crystallin J8Z27_20995 PF03808 Glycosyl transferase WecB/TagA/CpsF family J8Z27_21005 PF13579 Glycosyl transferase 4-like domain J8Z27_21005 PF00534 Glycosyl transferases group 1 J8Z27_21015 PF00132 Bacterial transferase hexapeptide (six repeats) J8Z27_21030 PF13439 Glycosyltransferase Family 4 J8Z27_21030 PF00534 Glycosyl transferases group 1 J8Z27_21035 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J8Z27_21035 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J8Z27_21035 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J8Z27_21040 PF02350 UDP-N-acetylglucosamine 2-epimerase J8Z27_21045 PF01451 Low molecular weight phosphotyrosine protein phosphatase J8Z27_21050 PF03605 Anaerobic c4-dicarboxylate membrane transporter J8Z27_21060 PF00248 Aldo/keto reductase family J8Z27_21070 PF00128 Alpha amylase, catalytic domain J8Z27_21080 PF00793 DAHP synthetase I family J8Z27_21085 PF00005 ABC transporter J8Z27_21090 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_21095 PF00497 Bacterial extracellular solute-binding proteins, family 3 J8Z27_21100 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_21105 PF01040 UbiA prenyltransferase family J8Z27_21110 PF02628 Cytochrome oxidase assembly protein J8Z27_21130 PF00510 Cytochrome c oxidase subunit III J8Z27_21135 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 J8Z27_21140 PF00115 Cytochrome C and Quinol oxidase polypeptide I J8Z27_21145 PF00116 Cytochrome C oxidase subunit II, periplasmic domain J8Z27_21145 PF02790 Cytochrome C oxidase subunit II, transmembrane domain J8Z27_21150 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J8Z27_21150 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J8Z27_21150 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J8Z27_21150 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J8Z27_21155 PF00892 EamA-like transporter family J8Z27_21165 PF03618 Kinase/pyrophosphorylase J8Z27_21170 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain J8Z27_21170 PF02896 PEP-utilising enzyme, TIM barrel domain J8Z27_21170 PF00391 PEP-utilising enzyme, mobile domain J8Z27_21175 PF07670 Nucleoside recognition J8Z27_21185 PF00175 Oxidoreductase NAD-binding domain J8Z27_21185 PF00970 Oxidoreductase FAD-binding domain J8Z27_21210 PF00873 AcrB/AcrD/AcrF family J8Z27_21225 PF05726 Pirin C-terminal cupin domain J8Z27_21225 PF02678 Pirin J8Z27_21230 PF00561 alpha/beta hydrolase fold J8Z27_21270 PF00512 His Kinase A (phospho-acceptor) domain J8Z27_21270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_21270 PF00672 HAMP domain J8Z27_21275 PF00072 Response regulator receiver domain J8Z27_21275 PF00486 Transcriptional regulatory protein, C terminal J8Z27_21280 PF00472 RF-1 domain J8Z27_21300 PF01979 Amidohydrolase family J8Z27_21305 PF00132 Bacterial transferase hexapeptide (six repeats) J8Z27_21310 PF02492 CobW/HypB/UreG, nucleotide-binding domain J8Z27_21310 PF07683 Cobalamin synthesis protein cobW C-terminal domain J8Z27_21315 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family J8Z27_21325 PF00701 Dihydrodipicolinate synthetase family J8Z27_21330 PF02423 Ornithine cyclodeaminase/mu-crystallin family J8Z27_21335 PF01266 FAD dependent oxidoreductase J8Z27_21340 PF05544 Proline racemase J8Z27_21345 PF00171 Aldehyde dehydrogenase family J8Z27_21350 PF00392 Bacterial regulatory proteins, gntR family J8Z27_21350 PF07729 FCD domain J8Z27_21360 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J8Z27_21365 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_21370 PF12911 N-terminal TM domain of oligopeptide transport permease C J8Z27_21370 PF00528 Binding-protein-dependent transport system inner membrane component J8Z27_21375 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J8Z27_21375 PF00005 ABC transporter J8Z27_21380 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J8Z27_21380 PF00005 ABC transporter J8Z27_21385 PF00557 Metallopeptidase family M24 J8Z27_21385 PF05195 Aminopeptidase P, N-terminal domain J8Z27_21405 PF01752 Collagenase J8Z27_21405 PF08453 Peptidase family M9 N-terminal J8Z27_21405 PF04151 Bacterial pre-peptidase C-terminal domain J8Z27_21415 PF03372 Endonuclease/Exonuclease/phosphatase family J8Z27_21420 PF01609 Transposase DDE domain J8Z27_21420 PF13006 Insertion element 4 transposase N-terminal J8Z27_21425 PF01752 Collagenase J8Z27_21425 PF08453 Peptidase family M9 N-terminal J8Z27_21430 PF00270 DEAD/DEAH box helicase J8Z27_21430 PF00271 Helicase conserved C-terminal domain J8Z27_21440 PF03734 L,D-transpeptidase catalytic domain J8Z27_21440 PF17969 L,D-transpeptidase C-terminal domain J8Z27_21440 PF01476 LysM domain J8Z27_21445 PF00875 DNA photolyase J8Z27_21445 PF03441 FAD binding domain of DNA photolyase J8Z27_21450 PF13411 MerR HTH family regulatory protein J8Z27_21455 PF08349 Protein of unknown function (DUF1722) J8Z27_21460 PF01048 Phosphorylase superfamily J8Z27_21475 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_21485 PF11742 Protein of unknown function (DUF3302) J8Z27_21490 PF00529 HlyD membrane-fusion protein of T1SS J8Z27_21490 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J8Z27_21495 PF03616 Sodium/glutamate symporter J8Z27_21510 PF00005 ABC transporter J8Z27_21510 PF00664 ABC transporter transmembrane region J8Z27_21520 PF01037 Lrp/AsnC ligand binding domain J8Z27_21530 PF01609 Transposase DDE domain J8Z27_21530 PF13006 Insertion element 4 transposase N-terminal J8Z27_21535 PF00474 Sodium:solute symporter family J8Z27_21545 PF14850 DNA-binding domain of Proline dehydrogenase J8Z27_21545 PF00171 Aldehyde dehydrogenase family J8Z27_21545 PF01619 Proline dehydrogenase J8Z27_21545 PF18327 Proline utilization A proline dehydrogenase N-terminal domain J8Z27_21550 PF12833 Helix-turn-helix domain J8Z27_21560 PF03781 Sulfatase-modifying factor enzyme 1 J8Z27_21570 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region J8Z27_21570 PF01243 Pyridoxamine 5'-phosphate oxidase J8Z27_21575 PF00529 HlyD membrane-fusion protein of T1SS J8Z27_21590 PF00664 ABC transporter transmembrane region J8Z27_21590 PF03412 Peptidase C39 family J8Z27_21590 PF00005 ABC transporter J8Z27_21595 PF08329 Chitinase A, N-terminal domain J8Z27_21595 PF00704 Glycosyl hydrolases family 18 J8Z27_21600 PF01212 Beta-eliminating lyase J8Z27_21605 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) J8Z27_21610 PF01966 HD domain J8Z27_21615 PF13302 Acetyltransferase (GNAT) domain J8Z27_21625 PF02630 SCO1/SenC J8Z27_21635 PF03466 LysR substrate binding domain J8Z27_21635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_21640 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 J8Z27_21645 PF01906 Putative heavy-metal-binding J8Z27_21650 PF03466 LysR substrate binding domain J8Z27_21650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_21655 PF07690 Major Facilitator Superfamily J8Z27_21660 PF00455 DeoR C terminal sensor domain J8Z27_21660 PF08220 DeoR-like helix-turn-helix domain J8Z27_21665 PF03009 Glycerophosphoryl diester phosphodiesterase family J8Z27_21670 PF03480 Bacterial extracellular solute-binding protein, family 7 J8Z27_21680 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J8Z27_21705 PF03306 Alpha-acetolactate decarboxylase J8Z27_21710 PF07690 Major Facilitator Superfamily J8Z27_21715 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J8Z27_21715 PF00205 Thiamine pyrophosphate enzyme, central domain J8Z27_21715 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J8Z27_21870 PF02954 Bacterial regulatory protein, Fis family J8Z27_21870 PF00158 Sigma-54 interaction domain J8Z27_21870 PF13185 GAF domain J8Z27_21875 PF00375 Sodium:dicarboxylate symporter family J8Z27_21880 PF00672 HAMP domain J8Z27_21880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J8Z27_21880 PF02743 Cache domain J8Z27_21890 PF04115 Ureidoglycolate lyase J8Z27_21895 PF03561 Allantoicase repeat J8Z27_21900 PF01014 Uricase J8Z27_21900 PF09349 OHCU decarboxylase J8Z27_21910 PF00576 HIUase/Transthyretin family J8Z27_21915 PF00860 Permease family J8Z27_21920 PF00860 Permease family J8Z27_21925 PF01979 Amidohydrolase family J8Z27_21930 PF06224 Winged helix DNA-binding domain J8Z27_21935 PF03928 Haem-degrading J8Z27_21940 PF00072 Response regulator receiver domain J8Z27_21940 PF00486 Transcriptional regulatory protein, C terminal J8Z27_21945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J8Z27_21945 PF07689 KaiB domain J8Z27_21945 PF00512 His Kinase A (phospho-acceptor) domain J8Z27_21950 PF00753 Metallo-beta-lactamase superfamily J8Z27_21995 PF01040 UbiA prenyltransferase family J8Z27_22005 PF00510 Cytochrome c oxidase subunit III J8Z27_22010 PF00115 Cytochrome C and Quinol oxidase polypeptide I J8Z27_22015 PF00116 Cytochrome C oxidase subunit II, periplasmic domain J8Z27_22015 PF06481 COX Aromatic Rich Motif J8Z27_22020 PF10282 Lactonase, 7-bladed beta-propeller J8Z27_22040 PF00497 Bacterial extracellular solute-binding proteins, family 3 J8Z27_22045 PF00672 HAMP domain J8Z27_22045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J8Z27_22045 PF02743 Cache domain J8Z27_22050 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J8Z27_22055 PF00118 TCP-1/cpn60 chaperonin family J8Z27_22060 PF00166 Chaperonin 10 Kd subunit J8Z27_22065 PF00011 Hsp20/alpha crystallin family J8Z27_22070 PF01594 AI-2E family transporter J8Z27_22105 PF00924 Mechanosensitive ion channel J8Z27_22110 PF02142 MGS-like domain J8Z27_22110 PF00781 Diacylglycerol kinase catalytic domain J8Z27_22135 PF00158 Sigma-54 interaction domain J8Z27_22135 PF01590 GAF domain J8Z27_22135 PF02954 Bacterial regulatory protein, Fis family J8Z27_22140 PF08448 PAS fold J8Z27_22140 PF00990 Diguanylate cyclase, GGDEF domain J8Z27_22140 PF00563 EAL domain J8Z27_22145 PF13581 Histidine kinase-like ATPase domain J8Z27_22160 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J8Z27_22160 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J8Z27_22165 PF01261 Xylose isomerase-like TIM barrel J8Z27_22170 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J8Z27_22170 PF00205 Thiamine pyrophosphate enzyme, central domain J8Z27_22170 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J8Z27_22175 PF01274 Malate synthase J8Z27_22185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J8Z27_22185 PF03466 LysR substrate binding domain J8Z27_22190 PF03606 C4-dicarboxylate anaerobic carrier J8Z27_22195 PF02129 X-Pro dipeptidyl-peptidase (S15 family) J8Z27_22195 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain J8Z27_22200 PF01047 MarR family J8Z27_22205 PF00892 EamA-like transporter family J8Z27_22225 PF03830 PTS system sorbose subfamily IIB component J8Z27_22225 PF03610 PTS system fructose IIA component J8Z27_22230 PF01709 Transcriptional regulator J8Z27_22260 PF13614 AAA domain J8Z27_22370 PF00563 EAL domain J8Z27_22370 PF12792 CSS motif domain associated with EAL J8Z27_22395 PF00816 H-NS histone family J8Z27_22410 PF04994 TfoX C-terminal domain J8Z27_22410 PF04993 TfoX N-terminal domain J8Z27_22530 PF00884 Sulfatase J8Z27_22535 PF13737 Transposase DDE domain J8Z27_22545 PF13737 Transposase DDE domain J8Z27_22555 PF13737 Transposase DDE domain J8Z27_22575 PF01797 Transposase IS200 like J8Z27_22585 PF00171 Aldehyde dehydrogenase family J8Z27_22600 PF13737 Transposase DDE domain J8Z27_22905 PF17762 HTH domain found in ParB protein J8Z27_22905 PF02195 ParB-like nuclease domain J8Z27_22945 PF10411 Disulfide bond isomerase protein N-terminus J8Z27_22945 PF13098 Thioredoxin-like domain J8Z27_22950 PF08272 Topoisomerase I zinc-ribbon-like J8Z27_22950 PF01131 DNA topoisomerase J8Z27_22950 PF01751 Toprim domain J8Z27_22950 PF01396 Topoisomerase DNA binding C4 zinc finger J8Z27_23015 PF00437 Type II/IV secretion system protein J8Z27_23040 PF00437 Type II/IV secretion system protein J8Z27_23130 PF05872 Bacterial protein of unknown function (DUF853) J8Z27_23140 PF01131 DNA topoisomerase J8Z27_23140 PF01751 Toprim domain J8Z27_23140 PF13342 C-terminal repeat of topoisomerase J8Z27_23140 PF01396 Topoisomerase DNA binding C4 zinc finger J8Z27_23145 PF00580 UvrD/REP helicase N-terminal domain J8Z27_23145 PF13361 UvrD-like helicase C-terminal domain