locus-tag class description FIV04_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain FIV04_00010 PF02767 DNA polymerase III beta subunit, central domain FIV04_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain FIV04_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_00020 PF00204 DNA gyrase B FIV04_00020 PF00986 DNA gyrase B subunit, carboxyl terminus FIV04_00020 PF18053 DNA gyrase B subunit insert domain FIV04_00020 PF01751 Toprim domain FIV04_00025 PF00011 Hsp20/alpha crystallin family FIV04_00030 PF00155 Aminotransferase class I and II FIV04_00035 PF00128 Alpha amylase, catalytic domain FIV04_00040 PF05746 DALR anticodon binding domain FIV04_00040 PF02092 Glycyl-tRNA synthetase beta subunit FIV04_00050 PF01169 Uncharacterized protein family UPF0016 FIV04_00070 PF03466 LysR substrate binding domain FIV04_00070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_00075 PF08240 Alcohol dehydrogenase GroES-like domain FIV04_00075 PF00107 Zinc-binding dehydrogenase FIV04_00080 PF00108 Thiolase, N-terminal domain FIV04_00080 PF02803 Thiolase, C-terminal domain FIV04_00090 PF01205 Uncharacterized protein family UPF0029 FIV04_00090 PF09186 Domain of unknown function (DUF1949) FIV04_00095 PF02386 Cation transport protein FIV04_00100 PF12724 Flavodoxin domain FIV04_00140 PF03466 LysR substrate binding domain FIV04_00140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_00145 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain FIV04_00145 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain FIV04_00150 PF04380 Membrane fusogenic activity FIV04_00155 PF00873 AcrB/AcrD/AcrF family FIV04_00160 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FIV04_00165 PF00440 Bacterial regulatory proteins, tetR family FIV04_00170 PF00580 UvrD/REP helicase N-terminal domain FIV04_00170 PF13361 UvrD-like helicase C-terminal domain FIV04_00175 PF13442 Cytochrome C oxidase, cbb3-type, subunit III FIV04_00205 PF00005 ABC transporter FIV04_00205 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FIV04_00210 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FIV04_00220 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_00220 PF12911 N-terminal TM domain of oligopeptide transport permease C FIV04_00260 PF00069 Protein kinase domain FIV04_00265 PF03116 NQR2, RnfD, RnfE family FIV04_00275 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FIV04_00275 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIV04_00285 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ FIV04_00290 PF01432 Peptidase family M3 FIV04_00295 PF01037 Lrp/AsnC ligand binding domain FIV04_00300 PF08448 PAS fold FIV04_00300 PF00990 Diguanylate cyclase, GGDEF domain FIV04_00300 PF00563 EAL domain FIV04_00315 PF00892 EamA-like transporter family FIV04_00320 PF00582 Universal stress protein family FIV04_00325 PF00210 Ferritin-like domain FIV04_00345 PF02646 RmuC family FIV04_00350 PF01209 ubiE/COQ5 methyltransferase family FIV04_00355 PF02036 SCP-2 sterol transfer family FIV04_00370 PF02416 mttA/Hcf106 family FIV04_00375 PF00902 Sec-independent protein translocase protein (TatC) FIV04_00385 PF01026 TatD related DNase FIV04_00390 PF00490 Delta-aminolevulinic acid dehydratase FIV04_00405 PF01367 5'-3' exonuclease, C-terminal SAM fold FIV04_00405 PF00476 DNA polymerase family A FIV04_00405 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain FIV04_00405 PF01612 3'-5' exonuclease FIV04_00420 PF01926 50S ribosome-binding GTPase FIV04_00425 PF00034 Cytochrome c FIV04_00445 PF04055 Radical SAM superfamily FIV04_00445 PF06969 HemN C-terminal domain FIV04_00450 PF00563 EAL domain FIV04_00450 PF00990 Diguanylate cyclase, GGDEF domain FIV04_00450 PF03707 Bacterial signalling protein N terminal repeat FIV04_00455 PF00158 Sigma-54 interaction domain FIV04_00455 PF00072 Response regulator receiver domain FIV04_00455 PF02954 Bacterial regulatory protein, Fis family FIV04_00460 PF00512 His Kinase A (phospho-acceptor) domain FIV04_00460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_00460 PF00989 PAS fold FIV04_00470 PF00120 Glutamine synthetase, catalytic domain FIV04_00470 PF03951 Glutamine synthetase, beta-Grasp domain FIV04_00500 PF00583 Acetyltransferase (GNAT) family FIV04_00500 PF09500 Putative thioesterase (yiiD_Cterm) FIV04_00515 PF01430 Hsp33 protein FIV04_00520 PF01479 S4 domain FIV04_00525 PF11356 Type II secretion system protein C FIV04_00530 PF03958 Bacterial type II/III secretion system short domain FIV04_00530 PF00263 Bacterial type II and III secretion system protein FIV04_00535 PF00437 Type II/IV secretion system protein FIV04_00540 PF00482 Type II secretion system (T2SS), protein F FIV04_00545 PF07963 Prokaryotic N-terminal methylation motif FIV04_00545 PF08334 Type II secretion system (T2SS), protein G FIV04_00550 PF12019 Type II transport protein GspH FIV04_00555 PF02501 Type II secretion system (T2SS), protein I FIV04_00555 PF07963 Prokaryotic N-terminal methylation motif FIV04_00560 PF11612 Type II secretion system (T2SS), protein J FIV04_00560 PF07963 Prokaryotic N-terminal methylation motif FIV04_00565 PF03934 Type II secretion system (T2SS), protein K FIV04_00570 PF12693 GspL periplasmic domain FIV04_00570 PF05134 Type II secretion system (T2SS), protein L FIV04_00575 PF04612 Type II secretion system (T2SS), protein M FIV04_00580 PF01203 Type II secretion system (T2SS), protein N FIV04_00585 PF00459 Inositol monophosphatase family FIV04_00590 PF00293 NUDIX domain FIV04_00595 PF01521 Iron-sulphur cluster biosynthesis FIV04_00595 PF01106 NifU-like domain FIV04_00600 PF00156 Phosphoribosyl transferase domain FIV04_00615 PF00575 S1 RNA binding domain FIV04_00615 PF17674 HHH domain FIV04_00615 PF16921 Tex protein YqgF-like domain FIV04_00615 PF09371 Tex-like protein N-terminal domain FIV04_00625 PF03449 Transcription elongation factor, N-terminal FIV04_00625 PF01272 Transcription elongation factor, GreA/GreB, C-term FIV04_00630 PF00486 Transcriptional regulatory protein, C terminal FIV04_00630 PF00072 Response regulator receiver domain FIV04_00635 PF00512 His Kinase A (phospho-acceptor) domain FIV04_00635 PF00672 HAMP domain FIV04_00635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_00640 PF17191 RecG wedge domain FIV04_00640 PF00271 Helicase conserved C-terminal domain FIV04_00640 PF00270 DEAD/DEAH box helicase FIV04_00645 PF13291 ACT domain FIV04_00645 PF04607 Region found in RelA / SpoT proteins FIV04_00645 PF02824 TGS domain FIV04_00655 PF00625 Guanylate kinase FIV04_00660 PF00860 Permease family FIV04_00685 PF08340 Domain of unknown function (DUF1732) FIV04_00685 PF03755 YicC-like family, N-terminal region FIV04_00700 PF03279 Bacterial lipid A biosynthesis acyltransferase FIV04_00710 PF02441 Flavoprotein FIV04_00710 PF04127 DNA / pantothenate metabolism flavoprotein FIV04_00715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_00715 PF17200 Single Cache domain 2 FIV04_00715 PF00672 HAMP domain FIV04_00720 PF04002 RadC-like JAB domain FIV04_00730 PF00471 Ribosomal protein L33 FIV04_00755 PF01467 Cytidylyltransferase-like FIV04_00760 PF01075 Glycosyltransferase family 9 (heptosyltransferase) FIV04_00765 PF00535 Glycosyl transferase family 2 FIV04_00770 PF01075 Glycosyltransferase family 9 (heptosyltransferase) FIV04_00775 PF01219 Prokaryotic diacylglycerol kinase FIV04_00785 PF00884 Sulfatase FIV04_00785 PF11893 Domain of unknown function (DUF3413) FIV04_00790 PF16363 GDP-mannose 4,6 dehydratase FIV04_00795 PF00483 Nucleotidyl transferase FIV04_00800 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family FIV04_00805 PF00793 DAHP synthetase I family FIV04_00810 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FIV04_00810 PF02894 Oxidoreductase family, C-terminal alpha/beta domain FIV04_00820 PF00535 Glycosyl transferase family 2 FIV04_00825 PF00535 Glycosyl transferase family 2 FIV04_00830 PF13439 Glycosyltransferase Family 4 FIV04_00830 PF00534 Glycosyl transferases group 1 FIV04_00835 PF02719 Polysaccharide biosynthesis protein FIV04_00840 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family FIV04_00845 PF02350 UDP-N-acetylglucosamine 2-epimerase FIV04_00850 PF03102 NeuB family FIV04_00850 PF08666 SAF domain FIV04_00860 PF00483 Nucleotidyl transferase FIV04_00870 PF02348 Cytidylyltransferase FIV04_00890 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) FIV04_00895 PF01075 Glycosyltransferase family 9 (heptosyltransferase) FIV04_00900 PF03279 Bacterial lipid A biosynthesis acyltransferase FIV04_00905 PF01370 NAD dependent epimerase/dehydratase family FIV04_00910 PF00440 Bacterial regulatory proteins, tetR family FIV04_00910 PF08360 QacR-like protein, C-terminal region FIV04_00915 PF01551 Peptidase family M23 FIV04_00920 PF06426 Serine acetyltransferase, N-terminal FIV04_00920 PF00132 Bacterial transferase hexapeptide (six repeats) FIV04_00925 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FIV04_00925 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus FIV04_00935 PF00581 Rhodanese-like domain FIV04_00945 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF FIV04_00955 PF06082 Exopolysaccharide biosynthesis protein YbjH FIV04_00960 PF02563 Polysaccharide biosynthesis/export protein FIV04_00960 PF18412 Outer-membrane lipoprotein Wza C-terminal domain FIV04_00960 PF10531 SLBB domain FIV04_00965 PF01451 Low molecular weight phosphotyrosine protein phosphatase FIV04_00970 PF13807 G-rich domain on putative tyrosine kinase FIV04_00970 PF13614 AAA domain FIV04_00970 PF02706 Chain length determinant protein FIV04_00975 PF02350 UDP-N-acetylglucosamine 2-epimerase FIV04_00980 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FIV04_00980 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain FIV04_00980 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain FIV04_00985 PF08666 SAF domain FIV04_00985 PF03102 NeuB family FIV04_00990 PF02350 UDP-N-acetylglucosamine 2-epimerase FIV04_00995 PF02348 Cytidylyltransferase FIV04_01015 PF00132 Bacterial transferase hexapeptide (six repeats) FIV04_01045 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FIV04_01045 PF02894 Oxidoreductase family, C-terminal alpha/beta domain FIV04_01060 PF01370 NAD dependent epimerase/dehydratase family FIV04_01065 PF02397 Bacterial sugar transferase FIV04_01070 PF02719 Polysaccharide biosynthesis protein FIV04_01075 PF01676 Metalloenzyme superfamily FIV04_01075 PF06415 BPG-independent PGAM N-terminus (iPGM_N) FIV04_01080 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FIV04_01080 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain FIV04_01085 PF01554 MatE FIV04_01090 PF00166 Chaperonin 10 Kd subunit FIV04_01095 PF00118 TCP-1/cpn60 chaperonin family FIV04_01110 PF00990 Diguanylate cyclase, GGDEF domain FIV04_01115 PF02308 MgtC family FIV04_01120 PF07963 Prokaryotic N-terminal methylation motif FIV04_01120 PF14245 Type IV pilin PilA FIV04_01125 PF04055 Radical SAM superfamily FIV04_01145 PF02313 Fumarate reductase subunit D FIV04_01155 PF13085 2Fe-2S iron-sulfur cluster binding domain FIV04_01155 PF13183 4Fe-4S dicluster domain FIV04_01160 PF02910 Fumarate reductase flavoprotein C-term FIV04_01160 PF00890 FAD binding domain FIV04_01175 PF03600 Citrate transporter FIV04_01175 PF02080 TrkA-C domain FIV04_01180 PF02666 Phosphatidylserine decarboxylase FIV04_01185 PF03193 RsgA GTPase FIV04_01190 PF00929 Exonuclease FIV04_01265 PF08331 Domain of unknown function (DUF1730) FIV04_01270 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE FIV04_01275 PF01520 N-acetylmuramoyl-L-alanine amidase FIV04_01280 PF01119 DNA mismatch repair protein, C-terminal domain FIV04_01280 PF08676 MutL C terminal dimerisation domain FIV04_01295 PF16360 GTP-binding GTPase Middle Region FIV04_01295 PF01926 50S ribosome-binding GTPase FIV04_01295 PF13167 GTP-binding GTPase N-terminal FIV04_01300 PF12221 Bacterial membrane protein N terminal FIV04_01300 PF01145 SPFH domain / Band 7 family FIV04_01305 PF01145 SPFH domain / Band 7 family FIV04_01310 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) FIV04_01315 PF00709 Adenylosuccinate synthetase FIV04_01320 PF08238 Sel1 repeat FIV04_01325 PF01979 Amidohydrolase family FIV04_01330 PF08461 Ribonuclease R winged-helix domain FIV04_01330 PF17876 Cold shock domain FIV04_01330 PF00773 RNB domain FIV04_01330 PF00575 S1 RNA binding domain FIV04_01330 PF08206 Ribonuclease B OB domain FIV04_01335 PF08032 RNA 2'-O ribose methyltransferase substrate binding FIV04_01335 PF00588 SpoU rRNA Methylase family FIV04_01340 PF01250 Ribosomal protein S6 FIV04_01345 PF01084 Ribosomal protein S18 FIV04_01360 PF03796 DnaB-like helicase C terminal domain FIV04_01360 PF00772 DnaB-like helicase N terminal domain FIV04_01375 PF01894 Uncharacterised protein family UPF0047 FIV04_01390 PF01475 Ferric uptake regulator family FIV04_01395 PF01207 Dihydrouridine synthase (Dus) FIV04_01415 PF00175 Oxidoreductase NAD-binding domain FIV04_01415 PF00667 FAD binding domain FIV04_01415 PF00258 Flavodoxin FIV04_01510 PF00999 Sodium/hydrogen exchanger family FIV04_01515 PF02310 B12 binding domain FIV04_01515 PF02607 B12 binding domain FIV04_01515 PF00809 Pterin binding enzyme FIV04_01515 PF02574 Homocysteine S-methyltransferase FIV04_01515 PF02965 Vitamin B12 dependent methionine synthase, activation domain FIV04_01520 PF00696 Amino acid kinase family FIV04_01520 PF01842 ACT domain FIV04_01525 PF00266 Aminotransferase class-V FIV04_01535 PF17760 UvrA interaction domain FIV04_01535 PF00005 ABC transporter FIV04_01535 PF17755 UvrA DNA-binding domain FIV04_01540 PF00483 Nucleotidyl transferase FIV04_01545 PF00196 Bacterial regulatory proteins, luxR family FIV04_01550 PF00436 Single-strand binding protein family FIV04_01555 PF00563 EAL domain FIV04_01555 PF00990 Diguanylate cyclase, GGDEF domain FIV04_01555 PF17157 Gammaproteobacterial periplasmic sensor domain FIV04_01575 PF07660 Secretin and TonB N terminus short domain FIV04_01575 PF11741 AMIN domain FIV04_01575 PF00263 Bacterial type II and III secretion system protein FIV04_01575 PF03958 Bacterial type II/III secretion system short domain FIV04_01580 PF13401 AAA domain FIV04_01580 PF01471 Putative peptidoglycan binding domain FIV04_01590 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain FIV04_01590 PF00437 Type II/IV secretion system protein FIV04_01595 PF00482 Type II secretion system (T2SS), protein F FIV04_01605 PF07963 Prokaryotic N-terminal methylation motif FIV04_01605 PF00114 Pilin (bacterial filament) FIV04_01610 PF00114 Pilin (bacterial filament) FIV04_01610 PF07963 Prokaryotic N-terminal methylation motif FIV04_01645 PF04085 rod shape-determining protein MreC FIV04_01650 PF04093 rod shape-determining protein MreD FIV04_01655 PF02545 Maf-like protein FIV04_01660 PF00575 S1 RNA binding domain FIV04_01660 PF10150 Ribonuclease E/G family FIV04_01670 PF00795 Carbon-nitrogen hydrolase FIV04_01675 PF01523 Putative modulator of DNA gyrase FIV04_01680 PF13638 PIN domain FIV04_01680 PF02562 PhoH-like protein FIV04_01690 PF00849 RNA pseudouridylate synthase FIV04_01695 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FIV04_01695 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FIV04_01700 PF00582 Universal stress protein family FIV04_01710 PF16868 NMT1-like family FIV04_01730 PF00348 Polyprenyl synthetase FIV04_01740 PF01016 Ribosomal L27 protein FIV04_01750 PF06738 Putative threonine/serine exporter FIV04_01755 PF12821 Threonine/Serine exporter, ThrE FIV04_01760 PF00186 Dihydrofolate reductase FIV04_01765 PF00149 Calcineurin-like phosphoesterase FIV04_01780 PF04166 Pyridoxal phosphate biosynthetic protein PdxA FIV04_01785 PF00639 PPIC-type PPIASE domain FIV04_01785 PF09312 SurA N-terminal domain FIV04_01790 PF03968 OstA-like protein FIV04_01790 PF04453 LPS transport system D FIV04_01795 PF05099 Tellurite resistance protein TerB FIV04_01795 PF00226 DnaJ domain FIV04_01810 PF00694 Aconitase C-terminal domain FIV04_01815 PF00330 Aconitase family (aconitate hydratase) FIV04_01820 PF00180 Isocitrate/isopropylmalate dehydrogenase FIV04_01840 PF00873 AcrB/AcrD/AcrF family FIV04_01845 PF01569 PAP2 superfamily FIV04_01855 PF03466 LysR substrate binding domain FIV04_01855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_01860 PF00501 AMP-binding enzyme FIV04_01865 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FIV04_01865 PF00205 Thiamine pyrophosphate enzyme, central domain FIV04_01865 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FIV04_01870 PF10369 Small subunit of acetolactate synthase FIV04_01875 PF07694 5TMR of 5TMR-LYT FIV04_01875 PF00990 Diguanylate cyclase, GGDEF domain FIV04_01885 PF00392 Bacterial regulatory proteins, gntR family FIV04_01885 PF07729 FCD domain FIV04_01890 PF00224 Pyruvate kinase, barrel domain FIV04_01890 PF02887 Pyruvate kinase, alpha/beta domain FIV04_01895 PF00455 DeoR C terminal sensor domain FIV04_01895 PF08220 DeoR-like helix-turn-helix domain FIV04_01900 PF01380 SIS domain FIV04_01905 PF03480 Bacterial extracellular solute-binding protein, family 7 FIV04_01910 PF01053 Cys/Met metabolism PLP-dependent enzyme FIV04_01920 PF03979 Sigma-70 factor, region 1.1 FIV04_01920 PF04545 Sigma-70, region 4 FIV04_01920 PF04539 Sigma-70 region 3 FIV04_01920 PF04546 Sigma-70, non-essential region FIV04_01920 PF04542 Sigma-70 region 2 FIV04_01920 PF00140 Sigma-70 factor, region 1.2 FIV04_01925 PF10410 DnaB-helicase binding domain of primase FIV04_01925 PF08275 DNA primase catalytic core, N-terminal domain FIV04_01925 PF01807 CHC2 zinc finger FIV04_01925 PF08278 DNA primase DnaG DnaB-binding FIV04_01930 PF09424 Yqey-like protein FIV04_01935 PF01165 Ribosomal protein S21 FIV04_01945 PF12697 Alpha/beta hydrolase family FIV04_01955 PF02152 Dihydroneopterin aldolase FIV04_01970 PF01966 HD domain FIV04_01970 PF12627 Probable RNA and SrmB- binding site of polymerase A FIV04_01970 PF01743 Poly A polymerase head domain FIV04_01975 PF01471 Putative peptidoglycan binding domain FIV04_01975 PF13401 AAA domain FIV04_01985 PF08239 Bacterial SH3 domain FIV04_01990 PF01384 Phosphate transporter family FIV04_01995 PF01865 Protein of unknown function DUF47 FIV04_02000 PF01928 CYTH domain FIV04_02005 PF07885 Ion channel FIV04_02010 PF00672 HAMP domain FIV04_02010 PF02743 Cache domain FIV04_02010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_02015 PF08335 GlnD PII-uridylyltransferase FIV04_02015 PF03710 Glutamate-ammonia ligase adenylyltransferase FIV04_02025 PF02321 Outer membrane efflux protein FIV04_02030 PF00293 NUDIX domain FIV04_02035 PF06853 Protein of unknown function (DUF1249) FIV04_02040 PF00149 Calcineurin-like phosphoesterase FIV04_02045 PF05728 Uncharacterised protein family (UPF0227) FIV04_02050 PF00204 DNA gyrase B FIV04_02050 PF00986 DNA gyrase B subunit, carboxyl terminus FIV04_02050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_02050 PF01751 Toprim domain FIV04_02055 PF00521 DNA gyrase/topoisomerase IV, subunit A FIV04_02055 PF03989 DNA gyrase C-terminal domain, beta-propeller FIV04_02060 PF13180 PDZ domain FIV04_02065 PF13180 PDZ domain FIV04_02065 PF00595 PDZ domain FIV04_02070 PF06295 Protein of unknown function (DUF1043) FIV04_02075 PF03969 AFG1-like ATPase FIV04_02080 PF00572 Ribosomal protein L13 FIV04_02090 PF00355 Rieske [2Fe-2S] domain FIV04_02090 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal FIV04_02095 PF00032 Cytochrome b(C-terminal)/b6/petD FIV04_02095 PF00033 Cytochrome b/b6/petB FIV04_02100 PF02167 Cytochrome C1 family FIV04_02105 PF02798 Glutathione S-transferase, N-terminal domain FIV04_02105 PF00043 Glutathione S-transferase, C-terminal domain FIV04_02110 PF04386 Stringent starvation protein B FIV04_02115 PF04972 BON domain FIV04_02120 PF13580 SIS domain FIV04_02125 PF02021 Uncharacterised protein family UPF0102 FIV04_02130 PF04348 LppC putative lipoprotein FIV04_02135 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FIV04_02150 PF04999 Cell division protein FtsL FIV04_02155 PF03717 Penicillin-binding Protein dimerisation domain FIV04_02155 PF00905 Penicillin binding protein transpeptidase domain FIV04_02160 PF08245 Mur ligase middle domain FIV04_02160 PF02875 Mur ligase family, glutamate ligase domain FIV04_02160 PF01225 Mur ligase family, catalytic domain FIV04_02165 PF02875 Mur ligase family, glutamate ligase domain FIV04_02165 PF01225 Mur ligase family, catalytic domain FIV04_02165 PF08245 Mur ligase middle domain FIV04_02180 PF01098 Cell cycle protein FIV04_02195 PF03799 Cell division protein FtsQ FIV04_02195 PF08478 POTRA domain, FtsQ-type FIV04_02200 PF02491 SHS2 domain inserted in FTSA FIV04_02205 PF12327 FtsZ family, C-terminal domain FIV04_02205 PF00091 Tubulin/FtsZ family, GTPase domain FIV04_02225 PF00293 NUDIX domain FIV04_02235 PF00117 Glutamine amidotransferase class-I FIV04_02235 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain FIV04_02240 PF02142 MGS-like domain FIV04_02240 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain FIV04_02240 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FIV04_02245 PF01925 Sulfite exporter TauE/SafE FIV04_02250 PF03466 LysR substrate binding domain FIV04_02250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_02265 PF03458 UPF0126 domain FIV04_02270 PF01497 Periplasmic binding protein FIV04_02290 PF00175 Oxidoreductase NAD-binding domain FIV04_02290 PF00667 FAD binding domain FIV04_02290 PF00258 Flavodoxin FIV04_02295 PF01493 GXGXG motif FIV04_02295 PF01645 Conserved region in glutamate synthase FIV04_02295 PF04898 Glutamate synthase central domain FIV04_02295 PF00310 Glutamine amidotransferases class-II FIV04_02300 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster FIV04_02300 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIV04_02305 PF01645 Conserved region in glutamate synthase FIV04_02305 PF04898 Glutamate synthase central domain FIV04_02305 PF00310 Glutamine amidotransferases class-II FIV04_02305 PF01493 GXGXG motif FIV04_02310 PF16199 Radical_SAM C-terminal domain FIV04_02310 PF04055 Radical SAM superfamily FIV04_02315 PF00360 Phytochrome region FIV04_02315 PF00990 Diguanylate cyclase, GGDEF domain FIV04_02315 PF01590 GAF domain FIV04_02315 PF00563 EAL domain FIV04_02320 PF00072 Response regulator receiver domain FIV04_02320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_02320 PF00989 PAS fold FIV04_02320 PF00512 His Kinase A (phospho-acceptor) domain FIV04_02320 PF01627 Hpt domain FIV04_02320 PF18415 Histidine kinase receptor ArcB trans-membrane domain FIV04_02330 PF00486 Transcriptional regulatory protein, C terminal FIV04_02330 PF00072 Response regulator receiver domain FIV04_02335 PF03737 Aldolase/RraA FIV04_02345 PF00696 Amino acid kinase family FIV04_02345 PF00742 Homoserine dehydrogenase FIV04_02345 PF01842 ACT domain FIV04_02345 PF13840 ACT domain FIV04_02345 PF03447 Homoserine dehydrogenase, NAD binding domain FIV04_02355 PF14821 Threonine synthase N terminus FIV04_02355 PF00291 Pyridoxal-phosphate dependent enzyme FIV04_02360 PF03358 NADPH-dependent FMN reductase FIV04_02370 PF01261 Xylose isomerase-like TIM barrel FIV04_02380 PF03167 Uracil DNA glycosylase superfamily FIV04_02395 PF01235 Sodium:alanine symporter family FIV04_02405 PF00271 Helicase conserved C-terminal domain FIV04_02405 PF00270 DEAD/DEAH box helicase FIV04_02415 PF05525 Branched-chain amino acid transport protein FIV04_02420 PF00258 Flavodoxin FIV04_02425 PF02899 Phage integrase, N-terminal SAM-like domain FIV04_02425 PF00589 Phage integrase family FIV04_02430 PF10411 Disulfide bond isomerase protein N-terminus FIV04_02430 PF13098 Thioredoxin-like domain FIV04_02435 PF01368 DHH family FIV04_02435 PF17768 RecJ OB domain FIV04_02435 PF02272 DHHA1 domain FIV04_02440 PF03462 PCRF domain FIV04_02440 PF00472 RF-1 domain FIV04_02445 PF00152 tRNA synthetases class II (D, K and N) FIV04_02445 PF01336 OB-fold nucleic acid binding domain FIV04_02450 PF00158 Sigma-54 interaction domain FIV04_02450 PF02954 Bacterial regulatory protein, Fis family FIV04_02450 PF06505 Activator of aromatic catabolism FIV04_02450 PF02830 V4R domain FIV04_02470 PF02976 DNA mismatch repair enzyme MutH FIV04_02480 PF01590 GAF domain FIV04_02480 PF02896 PEP-utilising enzyme, TIM barrel domain FIV04_02480 PF05524 PEP-utilising enzyme, N-terminal FIV04_02480 PF00391 PEP-utilising enzyme, mobile domain FIV04_02485 PF01925 Sulfite exporter TauE/SafE FIV04_02500 PF02690 Na+/Pi-cotransporter FIV04_02505 PF03466 LysR substrate binding domain FIV04_02505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_02510 PF01022 Bacterial regulatory protein, arsR family FIV04_02520 PF03023 Lipid II flippase MurJ FIV04_02525 PF01687 Riboflavin kinase FIV04_02525 PF06574 FAD synthetase FIV04_02535 PF01252 Signal peptidase (SPase) II FIV04_02540 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FIV04_02545 PF02401 LytB protein FIV04_02550 PF00072 Response regulator receiver domain FIV04_02550 PF04397 LytTr DNA-binding domain FIV04_02555 PF07694 5TMR of 5TMR-LYT FIV04_02555 PF06580 Histidine kinase FIV04_02560 PF02554 Carbon starvation protein CstA FIV04_02575 PF03702 Anhydro-N-acetylmuramic acid kinase FIV04_02580 PF00933 Glycosyl hydrolase family 3 N terminal domain FIV04_02585 PF00793 DAHP synthetase I family FIV04_02590 PF01817 Chorismate mutase type II FIV04_02590 PF02153 Prephenate dehydrogenase FIV04_02595 PF04225 Opacity-associated protein A LysM-like domain FIV04_02595 PF01551 Peptidase family M23 FIV04_02600 PF07238 PilZ domain FIV04_02605 PF12848 ABC transporter FIV04_02605 PF00005 ABC transporter FIV04_02610 PF01464 Transglycosylase SLT domain FIV04_02610 PF14718 Soluble lytic murein transglycosylase L domain FIV04_02620 PF01931 Protein of unknown function DUF84 FIV04_02625 PF00990 Diguanylate cyclase, GGDEF domain FIV04_02625 PF00563 EAL domain FIV04_02630 PF13416 Bacterial extracellular solute-binding protein FIV04_02635 PF01817 Chorismate mutase type II FIV04_02635 PF00800 Prephenate dehydratase FIV04_02640 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein FIV04_02645 PF01464 Transglycosylase SLT domain FIV04_02650 PF13525 Outer membrane lipoprotein FIV04_02655 PF00849 RNA pseudouridylate synthase FIV04_02655 PF01479 S4 domain FIV04_02665 PF00004 ATPase family associated with various cellular activities (AAA) FIV04_02665 PF02861 Clp amino terminal domain, pathogenicity island component FIV04_02665 PF07724 AAA domain (Cdc48 subfamily) FIV04_02665 PF10431 C-terminal, D2-small domain, of ClpB protein FIV04_02665 PF17871 AAA lid domain FIV04_02705 PF03411 Penicillin-insensitive murein endopeptidase FIV04_02715 PF12838 4Fe-4S dicluster domain FIV04_02730 PF00486 Transcriptional regulatory protein, C terminal FIV04_02730 PF00072 Response regulator receiver domain FIV04_02735 PF11808 Phosphate regulon sensor protein PhoR FIV04_02735 PF00989 PAS fold FIV04_02735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_02735 PF00512 His Kinase A (phospho-acceptor) domain FIV04_02740 PF12849 PBP superfamily domain FIV04_02745 PF02541 Ppx/GppA phosphatase family FIV04_02750 PF13089 Polyphosphate kinase N-terminal domain FIV04_02750 PF17941 Polyphosphate kinase C-terminal domain 1 FIV04_02750 PF13090 Polyphosphate kinase C-terminal domain 2 FIV04_02750 PF02503 Polyphosphate kinase middle domain FIV04_02755 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_02760 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_02765 PF00005 ABC transporter FIV04_02770 PF01895 PhoU domain FIV04_02785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_02785 PF03466 LysR substrate binding domain FIV04_02795 PF00578 AhpC/TSA family FIV04_02795 PF10417 C-terminal domain of 1-Cys peroxiredoxin FIV04_02800 PF03466 LysR substrate binding domain FIV04_02800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_02805 PF00571 CBS domain FIV04_02820 PF02699 Preprotein translocase subunit FIV04_02825 PF07549 SecD/SecF GG Motif FIV04_02825 PF13721 SecD export protein N-terminal TM region FIV04_02825 PF02355 Protein export membrane protein FIV04_02830 PF07549 SecD/SecF GG Motif FIV04_02830 PF02355 Protein export membrane protein FIV04_02835 PF03466 LysR substrate binding domain FIV04_02835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_02845 PF00459 Inositol monophosphatase family FIV04_02850 PF00588 SpoU rRNA Methylase family FIV04_02865 PF01592 NifU-like N terminal domain FIV04_02870 PF01521 Iron-sulphur cluster biosynthesis FIV04_02875 PF00226 DnaJ domain FIV04_02875 PF07743 HSCB C-terminal oligomerisation domain FIV04_02885 PF00111 2Fe-2S iron-sulfur cluster binding domain FIV04_02890 PF04384 Iron-sulphur cluster assembly FIV04_02910 PF13464 Domain of unknown function (DUF4115) FIV04_02925 PF09976 Tetratricopeptide repeat-like domain FIV04_02930 PF13360 PQQ-like domain FIV04_02945 PF00990 Diguanylate cyclase, GGDEF domain FIV04_02945 PF08448 PAS fold FIV04_02960 PF02653 Branched-chain amino acid transport system / permease component FIV04_02970 PF00005 ABC transporter FIV04_02970 PF12399 Branched-chain amino acid ATP-binding cassette transporter FIV04_02975 PF00005 ABC transporter FIV04_02980 PF01774 UreD urease accessory protein FIV04_02985 PF00547 Urease, gamma subunit FIV04_02990 PF00699 Urease beta subunit FIV04_02995 PF00449 Urease alpha-subunit, N-terminal domain FIV04_02995 PF01979 Amidohydrolase family FIV04_03000 PF02814 UreE urease accessory protein, N-terminal domain FIV04_03000 PF05194 UreE urease accessory protein, C-terminal domain FIV04_03010 PF01730 UreF FIV04_03015 PF02492 CobW/HypB/UreG, nucleotide-binding domain FIV04_03020 PF02601 Exonuclease VII, large subunit FIV04_03020 PF13742 OB-fold nucleic acid binding domain FIV04_03025 PF00571 CBS domain FIV04_03025 PF00478 IMP dehydrogenase / GMP reductase domain FIV04_03035 PF00704 Glycosyl hydrolases family 18 FIV04_03035 PF06483 Chitinase C FIV04_03040 PF01184 GPR1/FUN34/yaaH family FIV04_03045 PF01235 Sodium:alanine symporter family FIV04_03050 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FIV04_03050 PF02378 Phosphotransferase system, EIIC FIV04_03050 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FIV04_03055 PF05068 Mannitol repressor FIV04_03060 PF10996 Beta-Casp domain FIV04_03060 PF00753 Metallo-beta-lactamase superfamily FIV04_03060 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain FIV04_03065 PF01553 Acyltransferase FIV04_03160 PF00291 Pyridoxal-phosphate dependent enzyme FIV04_03170 PF08534 Redoxin FIV04_03175 PF08534 Redoxin FIV04_03180 PF00486 Transcriptional regulatory protein, C terminal FIV04_03180 PF00072 Response regulator receiver domain FIV04_03185 PF00512 His Kinase A (phospho-acceptor) domain FIV04_03185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_03185 PF00672 HAMP domain FIV04_03185 PF16527 Two-component sensor protein CpxA, periplasmic domain FIV04_03200 PF00034 Cytochrome c FIV04_03200 PF03150 Di-haem cytochrome c peroxidase FIV04_03215 PF18030 RimK PreATP-grasp domain FIV04_03215 PF08443 RimK-like ATP-grasp domain FIV04_03220 PF01668 SmpB protein FIV04_03225 PF03364 Polyketide cyclase / dehydrase and lipid transport FIV04_03230 PF03658 RnfH family Ubiquitin FIV04_03235 PF04355 SmpA / OmlA family FIV04_03240 PF02463 RecF/RecN/SMC N terminal domain FIV04_03245 PF01541 GIY-YIG catalytic domain FIV04_03260 PF00375 Sodium:dicarboxylate symporter family FIV04_03280 PF00114 Pilin (bacterial filament) FIV04_03280 PF07963 Prokaryotic N-terminal methylation motif FIV04_03305 PF03806 AbgT putative transporter family FIV04_03310 PF00571 CBS domain FIV04_03310 PF03471 Transporter associated domain FIV04_03310 PF01595 Cyclin M transmembrane N-terminal domain FIV04_03315 PF14437 MafB19-like deaminase FIV04_03320 PF02566 OsmC-like protein FIV04_03325 PF01047 MarR family FIV04_03330 PF01464 Transglycosylase SLT domain FIV04_03330 PF00497 Bacterial extracellular solute-binding proteins, family 3 FIV04_03335 PF02769 AIR synthase related protein, C-terminal domain FIV04_03335 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain FIV04_03335 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal FIV04_03345 PF14602 Hexapeptide repeat of succinyl-transferase FIV04_03345 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle FIV04_03355 PF01914 MarC family integral membrane protein FIV04_03370 PF07130 YebG protein FIV04_03375 PF03466 LysR substrate binding domain FIV04_03375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_03385 PF17946 RecC C-terminal domain FIV04_03390 PF00580 UvrD/REP helicase N-terminal domain FIV04_03390 PF13361 UvrD-like helicase C-terminal domain FIV04_03390 PF12705 PD-(D/E)XK nuclease superfamily FIV04_03395 PF13538 UvrD-like helicase C-terminal domain FIV04_03415 PF03562 MltA specific insert domain FIV04_03415 PF06725 3D domain FIV04_03420 PF00899 ThiF family FIV04_03425 PF02657 Fe-S metabolism associated domain FIV04_03430 PF00266 Aminotransferase class-V FIV04_03435 PF08546 Ketopantoate reductase PanE/ApbA C terminal FIV04_03435 PF02558 Ketopantoate reductase PanE/ApbA FIV04_03445 PF07690 Major Facilitator Superfamily FIV04_03450 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FIV04_03465 PF01722 BolA-like protein FIV04_03475 PF03116 NQR2, RnfD, RnfE family FIV04_03480 PF04205 FMN-binding domain FIV04_03495 PF00111 2Fe-2S iron-sulfur cluster binding domain FIV04_03495 PF00970 Oxidoreductase FAD-binding domain FIV04_03495 PF00175 Oxidoreductase NAD-binding domain FIV04_03500 PF02424 ApbE family FIV04_03505 PF04400 (Na+)-NQR maturation NqrM FIV04_03510 PF00990 Diguanylate cyclase, GGDEF domain FIV04_03510 PF00072 Response regulator receiver domain FIV04_03515 PF00817 impB/mucB/samB family FIV04_03515 PF11799 impB/mucB/samB family C-terminal domain FIV04_03515 PF11798 IMS family HHH motif FIV04_03520 PF00570 HRDC domain FIV04_03520 PF16124 RecQ zinc-binding FIV04_03520 PF09382 RQC domain FIV04_03520 PF00271 Helicase conserved C-terminal domain FIV04_03520 PF00270 DEAD/DEAH box helicase FIV04_03525 PF01272 Transcription elongation factor, GreA/GreB, C-term FIV04_03525 PF03449 Transcription elongation factor, N-terminal FIV04_03535 PF00209 Sodium:neurotransmitter symporter family FIV04_03540 PF04055 Radical SAM superfamily FIV04_03540 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family FIV04_03550 PF04359 Protein of unknown function (DUF493) FIV04_03555 PF07943 Penicillin-binding protein 5, C-terminal domain FIV04_03555 PF00768 D-alanyl-D-alanine carboxypeptidase FIV04_03560 PF03330 Lytic transglycolase FIV04_03560 PF05036 Sporulation related domain FIV04_03565 PF01098 Cell cycle protein FIV04_03570 PF03717 Penicillin-binding Protein dimerisation domain FIV04_03570 PF00905 Penicillin binding protein transpeptidase domain FIV04_03575 PF02590 Predicted SPOUT methyltransferase FIV04_03585 PF06144 DNA polymerase III, delta subunit FIV04_03585 PF14840 Processivity clamp loader gamma complex DNA pol III C-term FIV04_03590 PF04390 Lipopolysaccharide-assembly FIV04_03595 PF13603 Leucyl-tRNA synthetase, Domain 2 FIV04_03595 PF08264 Anticodon-binding domain of tRNA FIV04_03595 PF00133 tRNA synthetases class I (I, L, M and V) FIV04_03600 PF07295 Zinc-ribbon containing domain FIV04_03605 PF00795 Carbon-nitrogen hydrolase FIV04_03610 PF03471 Transporter associated domain FIV04_03610 PF00571 CBS domain FIV04_03620 PF02562 PhoH-like protein FIV04_03625 PF01938 TRAM domain FIV04_03625 PF04055 Radical SAM superfamily FIV04_03625 PF00919 Uncharacterized protein family UPF0004 FIV04_03630 PF01494 FAD binding domain FIV04_03635 PF10282 Lactonase, 7-bladed beta-propeller FIV04_03740 PF01926 50S ribosome-binding GTPase FIV04_03740 PF06071 Protein of unknown function (DUF933) FIV04_03750 PF14572 Phosphoribosyl synthetase-associated domain FIV04_03750 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase FIV04_03775 PF13847 Methyltransferase domain FIV04_03775 PF17827 PrmC N-terminal domain FIV04_03780 PF04247 Invasion gene expression up-regulator, SirB FIV04_03785 PF13369 Transglutaminase-like superfamily FIV04_03795 PF02872 5'-nucleotidase, C-terminal domain FIV04_03795 PF00149 Calcineurin-like phosphoesterase FIV04_03800 PF04073 Aminoacyl-tRNA editing domain FIV04_03805 PF01479 S4 domain FIV04_03805 PF00849 RNA pseudouridylate synthase FIV04_03810 PF01713 Smr domain FIV04_03835 PF02838 Glycosyl hydrolase family 20, domain 2 FIV04_03835 PF00728 Glycosyl hydrolase family 20, catalytic domain FIV04_03835 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain FIV04_03835 PF03173 Putative carbohydrate binding domain FIV04_03850 PF00403 Heavy-metal-associated domain FIV04_03855 PF00749 tRNA synthetases class I (E and Q), catalytic domain FIV04_03865 PF00109 Beta-ketoacyl synthase, N-terminal domain FIV04_03865 PF02801 Beta-ketoacyl synthase, C-terminal domain FIV04_03880 PF02801 Beta-ketoacyl synthase, C-terminal domain FIV04_03880 PF00109 Beta-ketoacyl synthase, N-terminal domain FIV04_03905 PF00221 Aromatic amino acid lyase FIV04_03910 PF00535 Glycosyl transferase family 2 FIV04_03920 PF00501 AMP-binding enzyme FIV04_03920 PF13193 AMP-binding enzyme C-terminal domain FIV04_03930 PF00550 Phosphopantetheine attachment site FIV04_03935 PF00550 Phosphopantetheine attachment site FIV04_03960 PF04820 Tryptophan halogenase FIV04_03995 PF13144 Chaperone for flagella basal body P-ring formation FIV04_04000 PF00072 Response regulator receiver domain FIV04_04000 PF01584 CheW-like domain FIV04_04005 PF03705 CheR methyltransferase, all-alpha domain FIV04_04005 PF01739 CheR methyltransferase, SAM binding domain FIV04_04010 PF00460 Flagella basal body rod protein FIV04_04015 PF00460 Flagella basal body rod protein FIV04_04015 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FIV04_04020 PF13860 FlgD Ig-like domain FIV04_04020 PF03963 Flagellar hook capping protein - N-terminal region FIV04_04020 PF13861 FlgD Tudor-like domain FIV04_04025 PF00460 Flagella basal body rod protein FIV04_04025 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FIV04_04025 PF07559 Flagellar basal body protein FlaE FIV04_04030 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FIV04_04030 PF00460 Flagella basal body rod protein FIV04_04035 PF00460 Flagella basal body rod protein FIV04_04035 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FIV04_04050 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase FIV04_04050 PF10135 Rod binding protein FIV04_04055 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FIV04_04055 PF07196 Flagellin hook IN motif FIV04_04065 PF00700 Bacterial flagellin C-terminal helical region FIV04_04065 PF07196 Flagellin hook IN motif FIV04_04065 PF00669 Bacterial flagellin N-terminal helical region FIV04_04070 PF00669 Bacterial flagellin N-terminal helical region FIV04_04070 PF07196 Flagellin hook IN motif FIV04_04070 PF00700 Bacterial flagellin C-terminal helical region FIV04_04075 PF00700 Bacterial flagellin C-terminal helical region FIV04_04075 PF07196 Flagellin hook IN motif FIV04_04075 PF00669 Bacterial flagellin N-terminal helical region FIV04_04080 PF03646 FlaG protein FIV04_04085 PF02465 Flagellar hook-associated protein 2 N-terminus FIV04_04085 PF07196 Flagellin hook IN motif FIV04_04085 PF07195 Flagellar hook-associated protein 2 C-terminus FIV04_04095 PF02561 Flagellar protein FliS FIV04_04100 PF00072 Response regulator receiver domain FIV04_04100 PF00158 Sigma-54 interaction domain FIV04_04100 PF02954 Bacterial regulatory protein, Fis family FIV04_04105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_04105 PF00512 His Kinase A (phospho-acceptor) domain FIV04_04110 PF00072 Response regulator receiver domain FIV04_04110 PF02954 Bacterial regulatory protein, Fis family FIV04_04110 PF00158 Sigma-54 interaction domain FIV04_04115 PF02049 Flagellar hook-basal body complex protein FliE FIV04_04120 PF08345 Flagellar M-ring protein C-terminal FIV04_04120 PF01514 Secretory protein of YscJ/FliF family FIV04_04125 PF01706 FliG C-terminal domain FIV04_04125 PF14841 FliG middle domain FIV04_04125 PF14842 FliG N-terminal domain FIV04_04135 PF18269 T3SS EscN ATPase C-terminal domain FIV04_04135 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FIV04_04155 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term FIV04_04155 PF02154 Flagellar motor switch protein FliM FIV04_04160 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term FIV04_04165 PF04347 Flagellar biosynthesis protein, FliO FIV04_04170 PF00813 FliP family FIV04_04175 PF01313 Bacterial export proteins, family 3 FIV04_04180 PF01311 Bacterial export proteins, family 1 FIV04_04185 PF01312 FlhB HrpN YscU SpaS Family FIV04_04190 PF00771 FHIPEP family FIV04_04195 PF00448 SRP54-type protein, GTPase domain FIV04_04200 PF10609 NUBPL iron-transfer P-loop NTPase FIV04_04205 PF04542 Sigma-70 region 2 FIV04_04205 PF04539 Sigma-70 region 3 FIV04_04205 PF04545 Sigma-70, region 4 FIV04_04210 PF00072 Response regulator receiver domain FIV04_04215 PF04344 Chemotaxis phosphatase, CheZ FIV04_04220 PF01627 Hpt domain FIV04_04220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_04220 PF01584 CheW-like domain FIV04_04220 PF07194 P2 response regulator binding domain FIV04_04220 PF02895 Signal transducing histidine kinase, homodimeric domain FIV04_04225 PF00072 Response regulator receiver domain FIV04_04225 PF01339 CheB methylesterase FIV04_04230 PF13614 AAA domain FIV04_04240 PF01584 CheW-like domain FIV04_04250 PF00005 ABC transporter FIV04_04255 PF03379 CcmB protein FIV04_04260 PF01578 Cytochrome C assembly protein FIV04_04265 PF04995 Heme exporter protein D (CcmD) FIV04_04275 PF01578 Cytochrome C assembly protein FIV04_04275 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal FIV04_04280 PF08534 Redoxin FIV04_04285 PF03918 Cytochrome C biogenesis protein FIV04_04290 PF03918 Cytochrome C biogenesis protein FIV04_04295 PF04333 MlaA lipoprotein FIV04_04300 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) FIV04_04305 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) FIV04_04315 PF04542 Sigma-70 region 2 FIV04_04315 PF08281 Sigma-70, region 4 FIV04_04320 PF02803 Thiolase, C-terminal domain FIV04_04320 PF00108 Thiolase, N-terminal domain FIV04_04325 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FIV04_04325 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FIV04_04325 PF00378 Enoyl-CoA hydratase/isomerase FIV04_04330 PF05193 Peptidase M16 inactive domain FIV04_04330 PF00675 Insulinase (Peptidase family M16) FIV04_04335 PF00300 Histidine phosphatase superfamily (branch 1) FIV04_04340 PF01713 Smr domain FIV04_04345 PF05175 Methyltransferase small domain FIV04_04350 PF01810 LysE type translocator FIV04_04365 PF00072 Response regulator receiver domain FIV04_04365 PF00486 Transcriptional regulatory protein, C terminal FIV04_04370 PF00672 HAMP domain FIV04_04370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_04370 PF00512 His Kinase A (phospho-acceptor) domain FIV04_04375 PF01547 Bacterial extracellular solute-binding protein FIV04_04385 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_04390 PF03459 TOBE domain FIV04_04390 PF17912 MalK OB fold domain FIV04_04390 PF00005 ABC transporter FIV04_04395 PF03480 Bacterial extracellular solute-binding protein, family 7 FIV04_04400 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component FIV04_04405 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FIV04_04415 PF00158 Sigma-54 interaction domain FIV04_04415 PF00072 Response regulator receiver domain FIV04_04415 PF02954 Bacterial regulatory protein, Fis family FIV04_04420 PF02743 Cache domain FIV04_04420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_04420 PF00512 His Kinase A (phospho-acceptor) domain FIV04_04440 PF02190 ATP-dependent protease La (LON) substrate-binding domain FIV04_04440 PF05362 Lon protease (S16) C-terminal proteolytic domain FIV04_04440 PF00004 ATPase family associated with various cellular activities (AAA) FIV04_04445 PF00216 Bacterial DNA-binding protein FIV04_04450 PF13145 PPIC-type PPIASE domain FIV04_04470 PF01966 HD domain FIV04_04470 PF13286 Phosphohydrolase-associated domain FIV04_04480 PF00155 Aminotransferase class I and II FIV04_04485 PF00425 chorismate binding enzyme FIV04_04495 PF12697 Alpha/beta hydrolase family FIV04_04500 PF00378 Enoyl-CoA hydratase/isomerase FIV04_04505 PF13378 Enolase C-terminal domain-like FIV04_04510 PF00501 AMP-binding enzyme FIV04_04510 PF13193 AMP-binding enzyme C-terminal domain FIV04_04515 PF00367 phosphotransferase system, EIIB FIV04_04515 PF02378 Phosphotransferase system, EIIC FIV04_04515 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 FIV04_04520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_04520 PF03466 LysR substrate binding domain FIV04_04530 PF03601 Conserved hypothetical protein 698 FIV04_04535 PF07690 Major Facilitator Superfamily FIV04_04590 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FIV04_04595 PF00873 AcrB/AcrD/AcrF family FIV04_04610 PF00291 Pyridoxal-phosphate dependent enzyme FIV04_04615 PF13404 AsnC-type helix-turn-helix domain FIV04_04615 PF01037 Lrp/AsnC ligand binding domain FIV04_04630 PF09619 Type III secretion system lipoprotein chaperone (YscW) FIV04_04635 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FIV04_04655 PF00392 Bacterial regulatory proteins, gntR family FIV04_04655 PF07702 UTRA domain FIV04_04660 PF00367 phosphotransferase system, EIIB FIV04_04660 PF02378 Phosphotransferase system, EIIC FIV04_04665 PF08244 Glycosyl hydrolases family 32 C terminal FIV04_04665 PF00251 Glycosyl hydrolases family 32 N-terminal domain FIV04_04675 PF00294 pfkB family carbohydrate kinase FIV04_04680 PF00497 Bacterial extracellular solute-binding proteins, family 3 FIV04_04690 PF00107 Zinc-binding dehydrogenase FIV04_04690 PF08240 Alcohol dehydrogenase GroES-like domain FIV04_04695 PF00360 Phytochrome region FIV04_04695 PF01590 GAF domain FIV04_04695 PF00990 Diguanylate cyclase, GGDEF domain FIV04_04695 PF00563 EAL domain FIV04_04720 PF03831 PhnA domain FIV04_04720 PF08274 PhnA Zinc-Ribbon FIV04_04730 PF06291 Bor protein FIV04_04735 PF00072 Response regulator receiver domain FIV04_04735 PF09308 LuxQ, periplasmic FIV04_04735 PF00512 His Kinase A (phospho-acceptor) domain FIV04_04735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_04740 PF00072 Response regulator receiver domain FIV04_04740 PF00486 Transcriptional regulatory protein, C terminal FIV04_04770 PF00892 EamA-like transporter family FIV04_04800 PF00884 Sulfatase FIV04_04805 PF00356 Bacterial regulatory proteins, lacI family FIV04_04820 PF07690 Major Facilitator Superfamily FIV04_04830 PF00474 Sodium:solute symporter family FIV04_04835 PF03315 Serine dehydratase beta chain FIV04_04835 PF03313 Serine dehydratase alpha chain FIV04_04840 PF01037 Lrp/AsnC ligand binding domain FIV04_04840 PF13404 AsnC-type helix-turn-helix domain FIV04_04845 PF01810 LysE type translocator FIV04_04850 PF05036 Sporulation related domain FIV04_04850 PF03330 Lytic transglycolase FIV04_04860 PF13382 Adenine deaminase C-terminal domain FIV04_04860 PF01979 Amidohydrolase family FIV04_04870 PF01979 Amidohydrolase family FIV04_04875 PF08212 Lipocalin-like domain FIV04_04885 PF08803 Putative mono-oxygenase ydhR FIV04_04905 PF00873 AcrB/AcrD/AcrF family FIV04_04925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_04925 PF03466 LysR substrate binding domain FIV04_04930 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FIV04_04935 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FIV04_04960 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FIV04_04970 PF02885 Glycosyl transferase family, helical bundle domain FIV04_04970 PF00591 Glycosyl transferase family, a/b domain FIV04_04985 PF00571 CBS domain FIV04_04990 PF01554 MatE FIV04_04995 PF00403 Heavy-metal-associated domain FIV04_05000 PF01048 Phosphorylase superfamily FIV04_05010 PF00672 HAMP domain FIV04_05010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_05020 PF01230 HIT domain FIV04_05035 PF08139 Prokaryotic membrane lipoprotein lipid attachment site FIV04_05035 PF13036 Peptidoglycan-synthase activator LpoB FIV04_05050 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIV04_05055 PF00106 short chain dehydrogenase FIV04_05060 PF01343 Peptidase family S49 FIV04_05060 PF08496 Peptidase family S49 N-terminal FIV04_05065 PF04293 SpoVR like protein FIV04_05070 PF04285 Protein of unknown function (DUF444) FIV04_05075 PF08298 PrkA AAA domain FIV04_05075 PF06798 PrkA serine protein kinase C-terminal domain FIV04_05090 PF04055 Radical SAM superfamily FIV04_05100 PF02901 Pyruvate formate lyase-like FIV04_05100 PF01228 Glycine radical FIV04_05115 PF00005 ABC transporter FIV04_05120 PF00497 Bacterial extracellular solute-binding proteins, family 3 FIV04_05125 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_05130 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_05145 PF00529 HlyD membrane-fusion protein of T1SS FIV04_05145 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FIV04_05150 PF00664 ABC transporter transmembrane region FIV04_05150 PF00005 ABC transporter FIV04_05155 PF03372 Endonuclease/Exonuclease/phosphatase family FIV04_05160 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain FIV04_05160 PF00326 Prolyl oligopeptidase family FIV04_05165 PF07690 Major Facilitator Superfamily FIV04_05170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_05170 PF00672 HAMP domain FIV04_05175 PF08007 Cupin superfamily protein FIV04_05180 PF10689 Protein of unknown function (DUF2496) FIV04_05190 PF01925 Sulfite exporter TauE/SafE FIV04_05195 PF13307 Helicase C-terminal domain FIV04_05195 PF06733 DEAD_2 FIV04_05205 PF00849 RNA pseudouridylate synthase FIV04_05210 PF03971 Monomeric isocitrate dehydrogenase FIV04_05215 PF00313 'Cold-shock' DNA-binding domain FIV04_05225 PF00004 ATPase family associated with various cellular activities (AAA) FIV04_05225 PF07724 AAA domain (Cdc48 subfamily) FIV04_05225 PF10431 C-terminal, D2-small domain, of ClpB protein FIV04_05225 PF02861 Clp amino terminal domain, pathogenicity island component FIV04_05225 PF17871 AAA lid domain FIV04_05230 PF01176 Translation initiation factor 1A / IF-1 FIV04_05235 PF04376 Arginine-tRNA-protein transferase, N terminus FIV04_05235 PF04377 Arginine-tRNA-protein transferase, C terminus FIV04_05255 PF10692 Protein of unknown function (DUF2498) FIV04_05260 PF08272 Topoisomerase I zinc-ribbon-like FIV04_05260 PF01396 Topoisomerase DNA binding C4 zinc finger FIV04_05260 PF01131 DNA topoisomerase FIV04_05260 PF01751 Toprim domain FIV04_05265 PF00483 Nucleotidyl transferase FIV04_05295 PF04994 TfoX C-terminal domain FIV04_05295 PF04993 TfoX N-terminal domain FIV04_05310 PF00072 Response regulator receiver domain FIV04_05310 PF00486 Transcriptional regulatory protein, C terminal FIV04_05315 PF02698 DUF218 domain FIV04_05330 PF04288 MukE-like family FIV04_05335 PF16330 MukB hinge domain FIV04_05335 PF04310 MukB N-terminal FIV04_05340 PF00384 Molybdopterin oxidoreductase FIV04_05340 PF01568 Molydopterin dinucleotide binding domain FIV04_05340 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region FIV04_05340 PF12838 4Fe-4S dicluster domain FIV04_05340 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FIV04_05355 PF08443 RimK-like ATP-grasp domain FIV04_05355 PF18030 RimK PreATP-grasp domain FIV04_05375 PF01904 Protein of unknown function DUF72 FIV04_05380 PF01336 OB-fold nucleic acid binding domain FIV04_05380 PF00152 tRNA synthetases class II (D, K and N) FIV04_05380 PF02938 GAD domain FIV04_05385 PF00990 Diguanylate cyclase, GGDEF domain FIV04_05390 PF02075 Crossover junction endodeoxyribonuclease RuvC FIV04_05395 PF00672 HAMP domain FIV04_05395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_05395 PF17200 Single Cache domain 2 FIV04_05410 PF01654 Cytochrome bd terminal oxidase subunit I FIV04_05415 PF02322 Cytochrome bd terminal oxidase subunit II FIV04_05420 PF08173 Membrane bound YbgT-like protein FIV04_05430 PF03061 Thioesterase superfamily FIV04_05435 PF01618 MotA/TolQ/ExbB proton channel family FIV04_05440 PF02472 Biopolymer transport protein ExbD/TolR FIV04_05455 PF00691 OmpA family FIV04_05460 PF16331 TolA binding protein trimerisation FIV04_05460 PF13174 Tetratricopeptide repeat FIV04_05465 PF02445 Quinolinate synthetase A protein FIV04_05480 PF00072 Response regulator receiver domain FIV04_05480 PF09308 LuxQ, periplasmic FIV04_05480 PF00512 His Kinase A (phospho-acceptor) domain FIV04_05480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_05485 PF06610 L-alanine exporter FIV04_05495 PF00356 Bacterial regulatory proteins, lacI family FIV04_05510 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_05515 PF03633 Glycosyl hydrolase family 65, C-terminal domain FIV04_05515 PF03632 Glycosyl hydrolase family 65 central catalytic domain FIV04_05515 PF03636 Glycosyl hydrolase family 65, N-terminal domain FIV04_05520 PF13419 Haloacid dehalogenase-like hydrolase FIV04_05525 PF00005 ABC transporter FIV04_05525 PF17912 MalK OB fold domain FIV04_05535 PF00251 Glycosyl hydrolases family 32 N-terminal domain FIV04_05535 PF08244 Glycosyl hydrolases family 32 C terminal FIV04_05540 PF00128 Alpha amylase, catalytic domain FIV04_05555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_05555 PF03466 LysR substrate binding domain FIV04_05560 PF00455 DeoR C terminal sensor domain FIV04_05560 PF08220 DeoR-like helix-turn-helix domain FIV04_05565 PF03009 Glycerophosphoryl diester phosphodiesterase family FIV04_05570 PF03480 Bacterial extracellular solute-binding protein, family 7 FIV04_05580 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FIV04_05605 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain FIV04_05605 PF01464 Transglycosylase SLT domain FIV04_05625 PF00486 Transcriptional regulatory protein, C terminal FIV04_05630 PF00873 AcrB/AcrD/AcrF family FIV04_05665 PF00486 Transcriptional regulatory protein, C terminal FIV04_05665 PF00072 Response regulator receiver domain FIV04_05670 PF00535 Glycosyl transferase family 2 FIV04_05675 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase FIV04_05685 PF04055 Radical SAM superfamily FIV04_05685 PF11842 Domain of unknown function (DUF3362) FIV04_05685 PF08497 Radical SAM N-terminal FIV04_05700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_05700 PF03466 LysR substrate binding domain FIV04_05705 PF08267 Cobalamin-independent synthase, N-terminal domain FIV04_05705 PF01717 Cobalamin-independent synthase, Catalytic domain FIV04_05715 PF03795 YCII-related domain FIV04_05720 PF03061 Thioesterase superfamily FIV04_05735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_05735 PF03466 LysR substrate binding domain FIV04_05740 PF00155 Aminotransferase class I and II FIV04_05745 PF00497 Bacterial extracellular solute-binding proteins, family 3 FIV04_05750 PF00672 HAMP domain FIV04_05750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_05770 PF00375 Sodium:dicarboxylate symporter family FIV04_05780 PF01145 SPFH domain / Band 7 family FIV04_05780 PF16200 C-terminal region of band_7 FIV04_05785 PF00290 Tryptophan synthase alpha chain FIV04_05790 PF00291 Pyridoxal-phosphate dependent enzyme FIV04_05795 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase FIV04_05795 PF00218 Indole-3-glycerol phosphate synthase FIV04_05800 PF00591 Glycosyl transferase family, a/b domain FIV04_05800 PF02885 Glycosyl transferase family, helical bundle domain FIV04_05805 PF00117 Glutamine amidotransferase class-I FIV04_05810 PF04715 Anthranilate synthase component I, N terminal region FIV04_05810 PF00425 chorismate binding enzyme FIV04_05815 PF08056 Tryptophan operon leader peptide FIV04_05820 PF02811 PHP domain FIV04_05825 PF01300 Telomere recombination FIV04_05830 PF01479 S4 domain FIV04_05830 PF00849 RNA pseudouridylate synthase FIV04_05840 PF04269 Protein of unknown function, DUF440 FIV04_05855 PF00136 DNA polymerase family B FIV04_05855 PF03104 DNA polymerase family B, exonuclease domain FIV04_05860 PF00072 Response regulator receiver domain FIV04_05860 PF00196 Bacterial regulatory proteins, luxR family FIV04_05865 PF02151 UvrB/uvrC motif FIV04_05865 PF01541 GIY-YIG catalytic domain FIV04_05865 PF08459 UvrC Helix-hairpin-helix N-terminal FIV04_05870 PF01066 CDP-alcohol phosphatidyltransferase FIV04_05895 PF00202 Aminotransferase class-III FIV04_05900 PF16653 Saccharopine dehydrogenase C-terminal domain FIV04_05900 PF03435 Saccharopine dehydrogenase NADP binding domain FIV04_05905 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain FIV04_05930 PF00994 Probable molybdopterin binding domain FIV04_05935 PF00970 Oxidoreductase FAD-binding domain FIV04_05935 PF00111 2Fe-2S iron-sulfur cluster binding domain FIV04_05935 PF00175 Oxidoreductase NAD-binding domain FIV04_05940 PF00268 Ribonucleotide reductase, small chain FIV04_05945 PF02867 Ribonucleotide reductase, barrel domain FIV04_05945 PF03477 ATP cone domain FIV04_05945 PF00317 Ribonucleotide reductase, all-alpha domain FIV04_05955 PF00521 DNA gyrase/topoisomerase IV, subunit A FIV04_05955 PF03989 DNA gyrase C-terminal domain, beta-propeller FIV04_05965 PF00581 Rhodanese-like domain FIV04_05970 PF02335 Cytochrome c552 FIV04_05980 PF13247 4Fe-4S dicluster domain FIV04_05985 PF03916 Polysulphide reductase, NrfD FIV04_05990 PF01578 Cytochrome C assembly protein FIV04_05990 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal FIV04_05995 PF08534 Redoxin FIV04_06000 PF03918 Cytochrome C biogenesis protein FIV04_06010 PF00925 GTP cyclohydrolase II FIV04_06035 PF01471 Putative peptidoglycan binding domain FIV04_06035 PF03734 L,D-transpeptidase catalytic domain FIV04_06040 PF05951 Bacterial protein of unknown function (DUF882) FIV04_06045 PF00753 Metallo-beta-lactamase superfamily FIV04_06060 PF03480 Bacterial extracellular solute-binding protein, family 7 FIV04_06070 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FIV04_06075 PF07730 Histidine kinase FIV04_06075 PF17200 Single Cache domain 2 FIV04_06080 PF00196 Bacterial regulatory proteins, luxR family FIV04_06080 PF00072 Response regulator receiver domain FIV04_06085 PF02028 BCCT, betaine/carnitine/choline family transporter FIV04_06095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_06095 PF00672 HAMP domain FIV04_06105 PF00127 Copper binding proteins, plastocyanin/azurin family FIV04_06115 PF02657 Fe-S metabolism associated domain FIV04_06120 PF00266 Aminotransferase class-V FIV04_06125 PF01458 Uncharacterized protein family (UPF0051) FIV04_06130 PF00005 ABC transporter FIV04_06135 PF01458 Uncharacterized protein family (UPF0051) FIV04_06140 PF01521 Iron-sulphur cluster biosynthesis FIV04_06150 PF07972 NrdI Flavodoxin like FIV04_06155 PF00317 Ribonucleotide reductase, all-alpha domain FIV04_06155 PF08343 Ribonucleotide reductase N-terminal FIV04_06155 PF02867 Ribonucleotide reductase, barrel domain FIV04_06160 PF00268 Ribonucleotide reductase, small chain FIV04_06165 PF08534 Redoxin FIV04_06170 PF00664 ABC transporter transmembrane region FIV04_06170 PF00005 ABC transporter FIV04_06175 PF00664 ABC transporter transmembrane region FIV04_06175 PF00005 ABC transporter FIV04_06180 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIV04_06195 PF00266 Aminotransferase class-V FIV04_06225 PF00990 Diguanylate cyclase, GGDEF domain FIV04_06225 PF00072 Response regulator receiver domain FIV04_06230 PF00939 Sodium:sulfate symporter transmembrane region FIV04_06235 PF02698 DUF218 domain FIV04_06240 PF03949 Malic enzyme, NAD binding domain FIV04_06240 PF00390 Malic enzyme, N-terminal domain FIV04_06245 PF08482 ATP-dependent helicase C-terminal FIV04_06245 PF00271 Helicase conserved C-terminal domain FIV04_06245 PF04408 Helicase associated domain (HA2) FIV04_06245 PF00270 DEAD/DEAH box helicase FIV04_06275 PF00691 OmpA family FIV04_06290 PF02913 FAD linked oxidases, C-terminal domain FIV04_06290 PF01565 FAD binding domain FIV04_06290 PF13183 4Fe-4S dicluster domain FIV04_06305 PF00221 Aromatic amino acid lyase FIV04_06315 PF00491 Arginase family FIV04_06320 PF01979 Amidohydrolase family FIV04_06325 PF00392 Bacterial regulatory proteins, gntR family FIV04_06325 PF07702 UTRA domain FIV04_06330 PF07070 SpoOM protein FIV04_06340 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FIV04_06340 PF02824 TGS domain FIV04_06340 PF03129 Anticodon binding domain FIV04_06340 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FIV04_06345 PF05198 Translation initiation factor IF-3, N-terminal domain FIV04_06345 PF00707 Translation initiation factor IF-3, C-terminal domain FIV04_06375 PF01177 Asp/Glu/Hydantoin racemase FIV04_06380 PF17932 Tetracyclin repressor-like, C-terminal domain FIV04_06380 PF00440 Bacterial regulatory proteins, tetR family FIV04_06385 PF00171 Aldehyde dehydrogenase family FIV04_06390 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain FIV04_06390 PF17944 Arginine decarboxylase C-terminal helical extension FIV04_06390 PF17810 Arginine decarboxylase helical bundle domain FIV04_06395 PF00491 Arginase family FIV04_06405 PF00497 Bacterial extracellular solute-binding proteins, family 3 FIV04_06410 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FIV04_06410 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain FIV04_06420 PF01554 MatE FIV04_06425 PF00005 ABC transporter FIV04_06425 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FIV04_06430 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FIV04_06430 PF00005 ABC transporter FIV04_06435 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FIV04_06440 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_06450 PF06629 MltA-interacting protein MipA FIV04_06455 PF08448 PAS fold FIV04_06455 PF08447 PAS fold FIV04_06455 PF00563 EAL domain FIV04_06455 PF00990 Diguanylate cyclase, GGDEF domain FIV04_06460 PF00072 Response regulator receiver domain FIV04_06460 PF00486 Transcriptional regulatory protein, C terminal FIV04_06465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_06465 PF08918 PhoQ Sensor FIV04_06470 PF01625 Peptide methionine sulfoxide reductase FIV04_06470 PF01641 SelR domain FIV04_06480 PF02074 Carboxypeptidase Taq (M32) metallopeptidase FIV04_06485 PF01810 LysE type translocator FIV04_06490 PF01235 Sodium:alanine symporter family FIV04_06505 PF01235 Sodium:alanine symporter family FIV04_06520 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FIV04_06535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_06535 PF00989 PAS fold FIV04_06535 PF17203 Single cache domain 3 FIV04_06535 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain FIV04_06540 PF00072 Response regulator receiver domain FIV04_06540 PF12431 Transcriptional regulator FIV04_06545 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain FIV04_06545 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain FIV04_06550 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase FIV04_06555 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain FIV04_06555 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FIV04_06560 PF00072 Response regulator receiver domain FIV04_06565 PF09905 DNA-binding protein VF530 FIV04_06580 PF01970 Tripartite tricarboxylate transporter TctA family FIV04_06615 PF00285 Citrate synthase, C-terminal domain FIV04_06620 PF00330 Aconitase family (aconitate hydratase) FIV04_06620 PF00694 Aconitase C-terminal domain FIV04_06625 PF04303 PrpF protein FIV04_06630 PF13193 AMP-binding enzyme C-terminal domain FIV04_06630 PF00501 AMP-binding enzyme FIV04_06630 PF16177 Acetyl-coenzyme A synthetase N-terminus FIV04_06650 PF04055 Radical SAM superfamily FIV04_06655 PF06508 Queuosine biosynthesis protein QueC FIV04_06660 PF17151 Periplasmic sensor domain FIV04_06660 PF00990 Diguanylate cyclase, GGDEF domain FIV04_06670 PF05736 OprF membrane domain FIV04_06670 PF00691 OmpA family FIV04_06685 PF10672 S-adenosylmethionine-dependent methyltransferase FIV04_06685 PF17785 PUA-like domain FIV04_06690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_06690 PF00672 HAMP domain FIV04_06690 PF17200 Single Cache domain 2 FIV04_06695 PF00708 Acylphosphatase FIV04_06700 PF04358 DsrC like protein FIV04_06705 PF01027 Inhibitor of apoptosis-promoting Bax1 FIV04_06710 PF00005 ABC transporter FIV04_06715 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_06720 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_06725 PF00497 Bacterial extracellular solute-binding proteins, family 3 FIV04_06730 PF14824 Sirohaem biosynthesis protein central FIV04_06730 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FIV04_06730 PF10414 Sirohaem synthase dimerisation region FIV04_06740 PF00793 DAHP synthetase I family FIV04_06755 PF17783 CvfB-like winged helix domain FIV04_06755 PF13509 S1 domain FIV04_06765 PF02470 MlaD protein FIV04_06770 PF04403 Paraquat-inducible protein A FIV04_06775 PF00664 ABC transporter transmembrane region FIV04_06775 PF00005 ABC transporter FIV04_06780 PF13185 GAF domain FIV04_06790 PF03572 Peptidase family S41 FIV04_06790 PF00595 PDZ domain FIV04_06790 PF11818 C-terminal domain of tail specific protease (DUF3340) FIV04_06790 PF17804 Tail specific protease N-terminal domain FIV04_06800 PF11940 Domain of unknown function (DUF3458) Ig-like fold FIV04_06800 PF17432 Domain of unknown function (DUF3458_C) ARM repeats FIV04_06800 PF01433 Peptidase family M1 domain FIV04_06810 PF05088 Bacterial NAD-glutamate dehydrogenase FIV04_06820 PF07126 Cell-division protein ZapC FIV04_06825 PF10672 S-adenosylmethionine-dependent methyltransferase FIV04_06825 PF02926 THUMP domain FIV04_06825 PF01170 Putative RNA methylase family UPF0020 FIV04_06845 PF04957 Ribosome modulation factor FIV04_06850 PF07977 FabA-like domain FIV04_06855 PF13654 AAA domain FIV04_06855 PF05362 Lon protease (S16) C-terminal proteolytic domain FIV04_07205 PF09308 LuxQ, periplasmic FIV04_07205 PF00072 Response regulator receiver domain FIV04_07205 PF00512 His Kinase A (phospho-acceptor) domain FIV04_07205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_07220 PF00115 Cytochrome C and Quinol oxidase polypeptide I FIV04_07235 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP FIV04_07235 PF13442 Cytochrome C oxidase, cbb3-type, subunit III FIV04_07245 PF00403 Heavy-metal-associated domain FIV04_07260 PF13545 Crp-like helix-turn-helix domain FIV04_07260 PF00027 Cyclic nucleotide-binding domain FIV04_07265 PF00582 Universal stress protein family FIV04_07270 PF01171 PP-loop family FIV04_07290 PF08402 TOBE domain FIV04_07290 PF00005 ABC transporter FIV04_07295 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_07300 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_07305 PF13416 Bacterial extracellular solute-binding protein FIV04_07310 PF13416 Bacterial extracellular solute-binding protein FIV04_07315 PF00563 EAL domain FIV04_07315 PF00990 Diguanylate cyclase, GGDEF domain FIV04_07315 PF08448 PAS fold FIV04_07325 PF02146 Sir2 family FIV04_07330 PF00909 Ammonium Transporter Family FIV04_07345 PF13247 4Fe-4S dicluster domain FIV04_07350 PF00384 Molybdopterin oxidoreductase FIV04_07350 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FIV04_07350 PF01568 Molydopterin dinucleotide binding domain FIV04_07360 PF02613 Nitrate reductase delta subunit FIV04_07380 PF02634 FdhD/NarQ family FIV04_07385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_07385 PF00672 HAMP domain FIV04_07390 PF12848 ABC transporter FIV04_07390 PF00005 ABC transporter FIV04_07405 PF12729 Four helix bundle sensory module for signal transduction FIV04_07405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_07405 PF00672 HAMP domain FIV04_07420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_07420 PF00512 His Kinase A (phospho-acceptor) domain FIV04_07425 PF02954 Bacterial regulatory protein, Fis family FIV04_07425 PF00072 Response regulator receiver domain FIV04_07425 PF00158 Sigma-54 interaction domain FIV04_07430 PF12849 PBP superfamily domain FIV04_07435 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_07440 PF08402 TOBE domain FIV04_07440 PF00005 ABC transporter FIV04_07450 PF03454 MoeA C-terminal region (domain IV) FIV04_07450 PF00994 Probable molybdopterin binding domain FIV04_07450 PF03453 MoeA N-terminal region (domain I and II) FIV04_07475 PF12729 Four helix bundle sensory module for signal transduction FIV04_07475 PF00672 HAMP domain FIV04_07475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_07480 PF00877 NlpC/P60 family FIV04_07500 PF00677 Lumazine binding domain FIV04_07505 PF01554 MatE FIV04_07520 PF00691 OmpA family FIV04_07540 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_07545 PF00005 ABC transporter FIV04_07545 PF00571 CBS domain FIV04_07555 PF02954 Bacterial regulatory protein, Fis family FIV04_07555 PF00072 Response regulator receiver domain FIV04_07555 PF00158 Sigma-54 interaction domain FIV04_07560 PF13439 Glycosyltransferase Family 4 FIV04_07560 PF00534 Glycosyl transferases group 1 FIV04_07565 PF00534 Glycosyl transferases group 1 FIV04_07565 PF08323 Starch synthase catalytic domain FIV04_07610 PF02397 Bacterial sugar transferase FIV04_07615 PF03466 LysR substrate binding domain FIV04_07615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_07620 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FIV04_07625 PF00873 AcrB/AcrD/AcrF family FIV04_07645 PF13419 Haloacid dehalogenase-like hydrolase FIV04_07650 PF12464 Maltose acetyltransferase FIV04_07650 PF00132 Bacterial transferase hexapeptide (six repeats) FIV04_07675 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_07680 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_07685 PF00497 Bacterial extracellular solute-binding proteins, family 3 FIV04_07690 PF00005 ABC transporter FIV04_07695 PF00005 ABC transporter FIV04_07695 PF00664 ABC transporter transmembrane region FIV04_07705 PF00561 alpha/beta hydrolase fold FIV04_07725 PF03328 HpcH/HpaI aldolase/citrate lyase family FIV04_07730 PF00356 Bacterial regulatory proteins, lacI family FIV04_07735 PF03480 Bacterial extracellular solute-binding protein, family 7 FIV04_07745 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FIV04_07750 PF00005 ABC transporter FIV04_07750 PF03459 TOBE domain FIV04_07750 PF17912 MalK OB fold domain FIV04_07760 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_07765 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_07785 PF12392 Collagenase FIV04_07785 PF01136 Peptidase family U32 FIV04_07810 PF00132 Bacterial transferase hexapeptide (six repeats) FIV04_07825 PF00582 Universal stress protein family FIV04_07830 PF03441 FAD binding domain of DNA photolyase FIV04_07830 PF00875 DNA photolyase FIV04_07835 PF04244 Deoxyribodipyrimidine photo-lyase-related protein FIV04_07840 PF00106 short chain dehydrogenase FIV04_07845 PF13476 AAA domain FIV04_07850 PF12320 Type 5 capsule protein repressor C-terminal domain FIV04_07850 PF00149 Calcineurin-like phosphoesterase FIV04_07855 PF08787 Alginate lyase FIV04_07860 PF08787 Alginate lyase FIV04_07875 PF07883 Cupin domain FIV04_07885 PF00571 CBS domain FIV04_07890 PF11490 DNA polymerase III polC-type N-terminus II FIV04_07890 PF07733 Bacterial DNA polymerase III alpha NTPase domain FIV04_07890 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FIV04_07890 PF14480 DNA polymerase III polC-type N-terminus I FIV04_07890 PF02811 PHP domain FIV04_07890 PF00929 Exonuclease FIV04_07890 PF14579 Helix-hairpin-helix motif FIV04_07895 PF00474 Sodium:solute symporter family FIV04_07900 PF02743 Cache domain FIV04_07900 PF00672 HAMP domain FIV04_07900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_07905 PF00933 Glycosyl hydrolase family 3 N terminal domain FIV04_07905 PF01915 Glycosyl hydrolase family 3 C-terminal domain FIV04_07905 PF14310 Fibronectin type III-like domain FIV04_07915 PF00583 Acetyltransferase (GNAT) family FIV04_07920 PF07715 TonB-dependent Receptor Plug Domain FIV04_07920 PF00593 TonB dependent receptor FIV04_07925 PF03466 LysR substrate binding domain FIV04_07925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_07935 PF13533 Biotin-lipoyl like FIV04_07940 PF00072 Response regulator receiver domain FIV04_07940 PF00196 Bacterial regulatory proteins, luxR family FIV04_07945 PF02321 Outer membrane efflux protein FIV04_07950 PF00664 ABC transporter transmembrane region FIV04_07950 PF00005 ABC transporter FIV04_07955 PF00005 ABC transporter FIV04_07955 PF00664 ABC transporter transmembrane region FIV04_07960 PF00704 Glycosyl hydrolases family 18 FIV04_07965 PF12792 CSS motif domain associated with EAL FIV04_07965 PF00563 EAL domain FIV04_07970 PF00582 Universal stress protein family FIV04_07975 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FIV04_07980 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component FIV04_07985 PF03480 Bacterial extracellular solute-binding protein, family 7 FIV04_07990 PF00171 Aldehyde dehydrogenase family FIV04_07995 PF03466 LysR substrate binding domain FIV04_07995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_08000 PF01266 FAD dependent oxidoreductase FIV04_08005 PF08943 CsiD FIV04_08010 PF03466 LysR substrate binding domain FIV04_08010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_08015 PF00202 Aminotransferase class-III FIV04_08045 PF01546 Peptidase family M20/M25/M40 FIV04_08045 PF07687 Peptidase dimerisation domain FIV04_08075 PF05971 RNA methyltransferase FIV04_08080 PF01863 Protein of unknown function DUF45 FIV04_08090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_08090 PF03466 LysR substrate binding domain FIV04_08095 PF07690 Major Facilitator Superfamily FIV04_08105 PF00990 Diguanylate cyclase, GGDEF domain FIV04_08105 PF00072 Response regulator receiver domain FIV04_08115 PF00583 Acetyltransferase (GNAT) family FIV04_08125 PF01032 FecCD transport family FIV04_08130 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family FIV04_08145 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase FIV04_08150 PF02654 Cobalamin-5-phosphate synthase FIV04_08160 PF01613 Flavin reductase like domain FIV04_08165 PF13460 NAD(P)H-binding FIV04_08175 PF03928 Haem-degrading FIV04_08180 PF00248 Aldo/keto reductase family FIV04_08185 PF03466 LysR substrate binding domain FIV04_08185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_08195 PF02028 BCCT, betaine/carnitine/choline family transporter FIV04_08200 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) FIV04_08205 PF12833 Helix-turn-helix domain FIV04_08205 PF02311 AraC-like ligand binding domain FIV04_08215 PF04116 Fatty acid hydroxylase superfamily FIV04_08220 PF07196 Flagellin hook IN motif FIV04_08220 PF00669 Bacterial flagellin N-terminal helical region FIV04_08220 PF00700 Bacterial flagellin C-terminal helical region FIV04_08225 PF08411 Exonuclease C-terminal FIV04_08225 PF00929 Exonuclease FIV04_08230 PF03788 LrgA family FIV04_08235 PF04172 LrgB-like family FIV04_08245 PF02222 ATP-grasp domain FIV04_08280 PF00512 His Kinase A (phospho-acceptor) domain FIV04_08280 PF00672 HAMP domain FIV04_08280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_08285 PF00072 Response regulator receiver domain FIV04_08285 PF00486 Transcriptional regulatory protein, C terminal FIV04_08295 PF00950 ABC 3 transport family FIV04_08300 PF00950 ABC 3 transport family FIV04_08305 PF00005 ABC transporter FIV04_08310 PF01297 Zinc-uptake complex component A periplasmic FIV04_08315 PF01475 Ferric uptake regulator family FIV04_08325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_08325 PF00672 HAMP domain FIV04_08325 PF02743 Cache domain FIV04_08335 PF02583 Metal-sensitive transcriptional repressor FIV04_08350 PF02678 Pirin FIV04_08350 PF17954 Quercetinase C-terminal cupin domain FIV04_08355 PF03466 LysR substrate binding domain FIV04_08355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_08365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_08365 PF03466 LysR substrate binding domain FIV04_08370 PF17848 Acetyl-coA carboxylase zinc finger domain FIV04_08370 PF01039 Carboxyl transferase domain FIV04_08380 PF01810 LysE type translocator FIV04_08390 PF01053 Cys/Met metabolism PLP-dependent enzyme FIV04_08395 PF01037 Lrp/AsnC ligand binding domain FIV04_08405 PF01526 Tn3 transposase DDE domain FIV04_08405 PF13700 Domain of unknown function (DUF4158) FIV04_08410 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FIV04_08410 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIV04_08410 PF00403 Heavy-metal-associated domain FIV04_08420 PF00403 Heavy-metal-associated domain FIV04_08425 PF02411 MerT mercuric transport protein FIV04_08430 PF09278 MerR, DNA binding FIV04_08430 PF00376 MerR family regulatory protein FIV04_08435 PF02796 Helix-turn-helix domain of resolvase FIV04_08435 PF00239 Resolvase, N terminal domain FIV04_08450 PF01734 Patatin-like phospholipase FIV04_08480 PF00175 Oxidoreductase NAD-binding domain FIV04_08480 PF00111 2Fe-2S iron-sulfur cluster binding domain FIV04_08480 PF00970 Oxidoreductase FAD-binding domain FIV04_08530 PF03483 B3/4 domain FIV04_08530 PF01588 Putative tRNA binding domain FIV04_08530 PF03147 Ferredoxin-fold anticodon binding domain FIV04_08530 PF03484 tRNA synthetase B5 domain FIV04_08530 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain FIV04_08540 PF00072 Response regulator receiver domain FIV04_08540 PF00990 Diguanylate cyclase, GGDEF domain FIV04_08580 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold FIV04_08580 PF00270 DEAD/DEAH box helicase FIV04_08580 PF11898 Domain of unknown function (DUF3418) FIV04_08580 PF04408 Helicase associated domain (HA2) FIV04_08580 PF00271 Helicase conserved C-terminal domain FIV04_08585 PF02525 Flavodoxin-like fold FIV04_08590 PF14310 Fibronectin type III-like domain FIV04_08590 PF00933 Glycosyl hydrolase family 3 N terminal domain FIV04_08590 PF01915 Glycosyl hydrolase family 3 C-terminal domain FIV04_08600 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_08605 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_08610 PF13416 Bacterial extracellular solute-binding protein FIV04_08615 PF00356 Bacterial regulatory proteins, lacI family FIV04_08620 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain FIV04_08625 PF00005 ABC transporter FIV04_08625 PF17912 MalK OB fold domain FIV04_08625 PF03459 TOBE domain FIV04_08665 PF00486 Transcriptional regulatory protein, C terminal FIV04_08695 PF00990 Diguanylate cyclase, GGDEF domain FIV04_08695 PF17151 Periplasmic sensor domain FIV04_08705 PF00012 Hsp70 protein FIV04_08710 PF00012 Hsp70 protein FIV04_08725 PF13302 Acetyltransferase (GNAT) domain FIV04_08730 PF00158 Sigma-54 interaction domain FIV04_08730 PF18024 Helix-turn-helix domain FIV04_08735 PF05128 Domain of unknown function (DUF697) FIV04_08740 PF04317 YcjX-like family, DUF463 FIV04_08755 PF04715 Anthranilate synthase component I, N terminal region FIV04_08755 PF00425 chorismate binding enzyme FIV04_08760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_08760 PF00072 Response regulator receiver domain FIV04_08760 PF09456 RcsC Alpha-Beta-Loop (ABL) FIV04_08760 PF00512 His Kinase A (phospho-acceptor) domain FIV04_08770 PF00293 NUDIX domain FIV04_08775 PF03222 Tryptophan/tyrosine permease family FIV04_08780 PF03313 Serine dehydratase alpha chain FIV04_08780 PF03315 Serine dehydratase beta chain FIV04_08785 PF03222 Tryptophan/tyrosine permease family FIV04_08790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_08790 PF00672 HAMP domain FIV04_08790 PF12729 Four helix bundle sensory module for signal transduction FIV04_08795 PF01336 OB-fold nucleic acid binding domain FIV04_08795 PF00152 tRNA synthetases class II (D, K and N) FIV04_08815 PF00392 Bacterial regulatory proteins, gntR family FIV04_08815 PF00155 Aminotransferase class I and II FIV04_08825 PF00672 HAMP domain FIV04_08825 PF01966 HD domain FIV04_08830 PF00155 Aminotransferase class I and II FIV04_08850 PF00990 Diguanylate cyclase, GGDEF domain FIV04_08850 PF07694 5TMR of 5TMR-LYT FIV04_08860 PF00266 Aminotransferase class-V FIV04_08870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_08870 PF00512 His Kinase A (phospho-acceptor) domain FIV04_08870 PF00497 Bacterial extracellular solute-binding proteins, family 3 FIV04_08885 PF04993 TfoX N-terminal domain FIV04_08885 PF04994 TfoX C-terminal domain FIV04_08895 PF03956 Lysine exporter LysO FIV04_08905 PF00282 Pyridoxal-dependent decarboxylase conserved domain FIV04_08910 PF01380 SIS domain FIV04_08910 PF01418 Helix-turn-helix domain, rpiR family FIV04_08915 PF00465 Iron-containing alcohol dehydrogenase FIV04_08920 PF00462 Glutaredoxin FIV04_08930 PF07055 Enoyl reductase FAD binding domain FIV04_08930 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase FIV04_08930 PF12241 Trans-2-enoyl-CoA reductase catalytic region FIV04_08935 PF09317 Domain of unknown function (DUF1974) FIV04_08935 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FIV04_08935 PF02770 Acyl-CoA dehydrogenase, middle domain FIV04_08935 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FIV04_08940 PF00440 Bacterial regulatory proteins, tetR family FIV04_08940 PF16295 Tetracyclin repressor-like, C-terminal domain FIV04_08960 PF06965 Na+/H+ antiporter 1 FIV04_08975 PF00005 ABC transporter FIV04_08980 PF01554 MatE FIV04_08985 PF14376 Haem-binding domain FIV04_08985 PF00034 Cytochrome c FIV04_08985 PF03150 Di-haem cytochrome c peroxidase FIV04_08990 PF13460 NAD(P)H-binding FIV04_08990 PF11066 Protein of unknown function (DUF2867) FIV04_09000 PF07690 Major Facilitator Superfamily FIV04_09005 PF01479 S4 domain FIV04_09005 PF00849 RNA pseudouridylate synthase FIV04_09010 PF04851 Type III restriction enzyme, res subunit FIV04_09010 PF00271 Helicase conserved C-terminal domain FIV04_09020 PF00072 Response regulator receiver domain FIV04_09020 PF00486 Transcriptional regulatory protein, C terminal FIV04_09025 PF00512 His Kinase A (phospho-acceptor) domain FIV04_09025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_09025 PF00672 HAMP domain FIV04_09035 PF05193 Peptidase M16 inactive domain FIV04_09035 PF00675 Insulinase (Peptidase family M16) FIV04_09040 PF00005 ABC transporter FIV04_09040 PF06472 ABC transporter transmembrane region 2 FIV04_09045 PF07715 TonB-dependent Receptor Plug Domain FIV04_09055 PF01618 MotA/TolQ/ExbB proton channel family FIV04_09060 PF01618 MotA/TolQ/ExbB proton channel family FIV04_09065 PF02472 Biopolymer transport protein ExbD/TolR FIV04_09085 PF00535 Glycosyl transferase family 2 FIV04_09090 PF01386 Ribosomal L25p family FIV04_09175 PF02492 CobW/HypB/UreG, nucleotide-binding domain FIV04_09175 PF07683 Cobalamin synthesis protein cobW C-terminal domain FIV04_09185 PF02567 Phenazine biosynthesis-like protein FIV04_09200 PF00924 Mechanosensitive ion channel FIV04_09200 PF12794 Mechanosensitive ion channel inner membrane domain 1 FIV04_09200 PF12795 Mechanosensitive ion channel porin domain FIV04_09210 PF03466 LysR substrate binding domain FIV04_09210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_09225 PF02470 MlaD protein FIV04_09230 PF04403 Paraquat-inducible protein A FIV04_09235 PF08787 Alginate lyase FIV04_09240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_09240 PF03466 LysR substrate binding domain FIV04_09260 PF00593 TonB dependent receptor FIV04_09260 PF07715 TonB-dependent Receptor Plug Domain FIV04_09265 PF11008 Protein of unknown function (DUF2846) FIV04_09270 PF01568 Molydopterin dinucleotide binding domain FIV04_09270 PF18364 Molybdopterin oxidoreductase N-terminal domain FIV04_09270 PF00384 Molybdopterin oxidoreductase FIV04_09275 PF03264 NapC/NirT cytochrome c family, N-terminal region FIV04_09285 PF00246 Zinc carboxypeptidase FIV04_09285 PF18027 Cytosolic carboxypeptidase N-terminal domain FIV04_09295 PF00271 Helicase conserved C-terminal domain FIV04_09295 PF00270 DEAD/DEAH box helicase FIV04_09315 PF13416 Bacterial extracellular solute-binding protein FIV04_09320 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_09325 PF00005 ABC transporter FIV04_09330 PF01066 CDP-alcohol phosphatidyltransferase FIV04_09335 PF01170 Putative RNA methylase family UPF0020 FIV04_09335 PF02926 THUMP domain FIV04_09335 PF10672 S-adenosylmethionine-dependent methyltransferase FIV04_09340 PF00849 RNA pseudouridylate synthase FIV04_09345 PF12729 Four helix bundle sensory module for signal transduction FIV04_09345 PF00672 HAMP domain FIV04_09345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_09350 PF00209 Sodium:neurotransmitter symporter family FIV04_09355 PF13091 PLD-like domain FIV04_09355 PF13396 Phospholipase_D-nuclease N-terminal FIV04_09360 PF01053 Cys/Met metabolism PLP-dependent enzyme FIV04_09375 PF03352 Methyladenine glycosylase FIV04_09380 PF00873 AcrB/AcrD/AcrF family FIV04_09385 PF13533 Biotin-lipoyl like FIV04_09390 PF13533 Biotin-lipoyl like FIV04_09395 PF04024 PspC domain FIV04_09400 PF06667 Phage shock protein B FIV04_09405 PF04012 PspA/IM30 family FIV04_09410 PF02954 Bacterial regulatory protein, Fis family FIV04_09410 PF00158 Sigma-54 interaction domain FIV04_09415 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FIV04_09420 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_09425 PF12911 N-terminal TM domain of oligopeptide transport permease C FIV04_09425 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_09430 PF00005 ABC transporter FIV04_09430 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FIV04_09435 PF00005 ABC transporter FIV04_09450 PF01368 DHH family FIV04_09450 PF02833 DHHA2 domain FIV04_09460 PF00384 Molybdopterin oxidoreductase FIV04_09460 PF18364 Molybdopterin oxidoreductase N-terminal domain FIV04_09460 PF01568 Molydopterin dinucleotide binding domain FIV04_09465 PF03264 NapC/NirT cytochrome c family, N-terminal region FIV04_09470 PF06796 Periplasmic nitrate reductase protein NapE FIV04_09475 PF03649 Uncharacterised protein family (UPF0014) FIV04_09480 PF01226 Formate/nitrite transporter FIV04_09505 PF00265 Thymidine kinase FIV04_09515 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FIV04_09525 PF08668 HDOD domain FIV04_09525 PF00563 EAL domain FIV04_09530 PF02810 SEC-C motif FIV04_09535 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase FIV04_09535 PF01502 Phosphoribosyl-AMP cyclohydrolase FIV04_09540 PF00977 Histidine biosynthesis protein FIV04_09545 PF00977 Histidine biosynthesis protein FIV04_09550 PF00117 Glutamine amidotransferase class-I FIV04_09555 PF00475 Imidazoleglycerol-phosphate dehydratase FIV04_09555 PF08645 Polynucleotide kinase 3 phosphatase FIV04_09560 PF00155 Aminotransferase class I and II FIV04_09565 PF00815 Histidinol dehydrogenase FIV04_09570 PF08029 HisG, C-terminal domain FIV04_09570 PF01634 ATP phosphoribosyltransferase FIV04_09575 PF03553 Na+/H+ antiporter family FIV04_09580 PF00816 H-NS histone family FIV04_09585 PF00294 pfkB family carbohydrate kinase FIV04_09605 PF08328 Adenylosuccinate lyase C-terminal FIV04_09605 PF00206 Lyase FIV04_09625 PF08241 Methyltransferase domain FIV04_09640 PF00202 Aminotransferase class-III FIV04_09645 PF01258 Prokaryotic dksA/traR C4-type zinc finger FIV04_09655 PF12002 MgsA AAA+ ATPase C terminal FIV04_09655 PF16193 AAA C-terminal domain FIV04_09655 PF00004 ATPase family associated with various cellular activities (AAA) FIV04_09660 PF03548 Outer membrane lipoprotein carrier protein LolA FIV04_09665 PF01580 FtsK/SpoIIIE family FIV04_09665 PF09397 Ftsk gamma domain FIV04_09665 PF17854 FtsK alpha domain FIV04_09665 PF13491 4TM region of DNA translocase FtsK/SpoIIIE FIV04_09670 PF01037 Lrp/AsnC ligand binding domain FIV04_09675 PF05222 Alanine dehydrogenase/PNT, N-terminal domain FIV04_09675 PF01262 Alanine dehydrogenase/PNT, C-terminal domain FIV04_09685 PF03466 LysR substrate binding domain FIV04_09685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_09695 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) FIV04_09710 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FIV04_09710 PF00005 ABC transporter FIV04_09715 PF00005 ABC transporter FIV04_09715 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FIV04_09720 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FIV04_09725 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_09725 PF12911 N-terminal TM domain of oligopeptide transport permease C FIV04_09730 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_09740 PF18073 Rubredoxin metal binding domain FIV04_09745 PF06305 Lipopolysaccharide assembly protein A domain FIV04_09755 PF00575 S1 RNA binding domain FIV04_09765 PF02348 Cytidylyltransferase FIV04_09780 PF00005 ABC transporter FIV04_09780 PF00664 ABC transporter transmembrane region FIV04_09785 PF00753 Metallo-beta-lactamase superfamily FIV04_09785 PF03772 Competence protein FIV04_09795 PF02687 FtsX-like permease family FIV04_09795 PF12704 MacB-like periplasmic core domain FIV04_09800 PF00005 ABC transporter FIV04_09805 PF12704 MacB-like periplasmic core domain FIV04_09805 PF02687 FtsX-like permease family FIV04_09815 PF17757 UvrB interaction domain FIV04_09815 PF00271 Helicase conserved C-terminal domain FIV04_09815 PF00270 DEAD/DEAH box helicase FIV04_09815 PF03461 TRCF domain FIV04_09815 PF02559 CarD-like/TRCF domain FIV04_09825 PF13302 Acetyltransferase (GNAT) domain FIV04_09840 PF02811 PHP domain FIV04_09840 PF07733 Bacterial DNA polymerase III alpha NTPase domain FIV04_09840 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FIV04_09840 PF14579 Helix-hairpin-helix motif FIV04_09840 PF01336 OB-fold nucleic acid binding domain FIV04_09845 PF01584 CheW-like domain FIV04_09845 PF00072 Response regulator receiver domain FIV04_09850 PF00480 ROK family FIV04_09855 PF02887 Pyruvate kinase, alpha/beta domain FIV04_09855 PF00224 Pyruvate kinase, barrel domain FIV04_09860 PF01734 Patatin-like phospholipase FIV04_09880 PF02378 Phosphotransferase system, EIIC FIV04_09880 PF00367 phosphotransferase system, EIIB FIV04_09885 PF01026 TatD related DNase FIV04_09890 PF09115 DNA polymerase III, delta subunit, C terminal FIV04_09895 PF02223 Thymidylate kinase FIV04_09900 PF02618 YceG-like family FIV04_09905 PF01063 Amino-transferase class IV FIV04_09910 PF02801 Beta-ketoacyl synthase, C-terminal domain FIV04_09910 PF00109 Beta-ketoacyl synthase, N-terminal domain FIV04_09915 PF00550 Phosphopantetheine attachment site FIV04_09925 PF00698 Acyl transferase domain FIV04_09930 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FIV04_09930 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FIV04_09945 PF02620 Large ribosomal RNA subunit accumulation protein YceD FIV04_09950 PF02545 Maf-like protein FIV04_09955 PF01479 S4 domain FIV04_09955 PF00849 RNA pseudouridylate synthase FIV04_09960 PF12111 Polyribonucleotide phosphorylase C terminal FIV04_09960 PF00575 S1 RNA binding domain FIV04_09960 PF10150 Ribonuclease E/G family FIV04_09965 PF00916 Sulfate permease family FIV04_09965 PF01740 STAS domain FIV04_09970 PF01451 Low molecular weight phosphotyrosine protein phosphatase FIV04_09975 PF12557 Cob(I)alamin adenosyltransferase N terminal FIV04_09975 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP FIV04_09980 PF05170 AsmA family FIV04_09990 PF10609 NUBPL iron-transfer P-loop NTPase FIV04_09995 PF09334 tRNA synthetases class I (M) FIV04_09995 PF01588 Putative tRNA binding domain FIV04_10005 PF00392 Bacterial regulatory proteins, gntR family FIV04_10005 PF07840 FadR C-terminal domain FIV04_10015 PF02600 Disulfide bond formation protein DsbB FIV04_10020 PF07516 SecA Wing and Scaffold domain FIV04_10020 PF02810 SEC-C motif FIV04_10020 PF07517 SecA DEAD-like domain FIV04_10020 PF01043 SecA preprotein cross-linking domain FIV04_10025 PF01207 Dihydrouridine synthase (Dus) FIV04_10030 PF00990 Diguanylate cyclase, GGDEF domain FIV04_10030 PF05230 MASE2 domain FIV04_10035 PF02903 Alpha amylase, N-terminal ig-like domain FIV04_10035 PF00128 Alpha amylase, catalytic domain FIV04_10050 PF00871 Acetokinase family FIV04_10055 PF07085 DRTGG domain FIV04_10055 PF01515 Phosphate acetyl/butaryl transferase FIV04_10060 PF13409 Glutathione S-transferase, N-terminal domain FIV04_10065 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FIV04_10065 PF00005 ABC transporter FIV04_10070 PF00005 ABC transporter FIV04_10070 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FIV04_10075 PF12911 N-terminal TM domain of oligopeptide transport permease C FIV04_10075 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_10080 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_10085 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FIV04_10090 PF02391 MoaE protein FIV04_10095 PF02597 ThiS family FIV04_10100 PF01967 MoaC family FIV04_10105 PF00994 Probable molybdopterin binding domain FIV04_10115 PF01933 Uncharacterised protein family UPF0052 FIV04_10120 PF01627 Hpt domain FIV04_10125 PF00158 Sigma-54 interaction domain FIV04_10125 PF02954 Bacterial regulatory protein, Fis family FIV04_10125 PF00072 Response regulator receiver domain FIV04_10135 PF12344 Ultra-violet resistance protein B FIV04_10135 PF02151 UvrB/uvrC motif FIV04_10135 PF17757 UvrB interaction domain FIV04_10135 PF00271 Helicase conserved C-terminal domain FIV04_10135 PF04851 Type III restriction enzyme, res subunit FIV04_10145 PF02508 Rnf-Nqr subunit, membrane protein FIV04_10155 PF12838 4Fe-4S dicluster domain FIV04_10155 PF13375 RnfC Barrel sandwich hybrid domain FIV04_10155 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit FIV04_10155 PF10531 SLBB domain FIV04_10175 PF00633 Helix-hairpin-helix motif FIV04_10175 PF00730 HhH-GPD superfamily base excision DNA repair protein FIV04_10175 PF10576 Iron-sulfur binding domain of endonuclease III FIV04_10180 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FIV04_10185 PF10952 Protein of unknown function (DUF2753) FIV04_10190 PF18393 MotY N-terminal domain FIV04_10190 PF00691 OmpA family FIV04_10195 PF00929 Exonuclease FIV04_10200 PF13726 Na+-H+ antiporter family FIV04_10200 PF03553 Na+/H+ antiporter family FIV04_10210 PF00072 Response regulator receiver domain FIV04_10210 PF00512 His Kinase A (phospho-acceptor) domain FIV04_10210 PF00672 HAMP domain FIV04_10210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_10210 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FIV04_10210 PF01627 Hpt domain FIV04_10220 PF00462 Glutaredoxin FIV04_10225 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain FIV04_10225 PF02777 Iron/manganese superoxide dismutases, C-terminal domain FIV04_10240 PF00171 Aldehyde dehydrogenase family FIV04_10240 PF00465 Iron-containing alcohol dehydrogenase FIV04_10245 PF01914 MarC family integral membrane protein FIV04_10250 PF00027 Cyclic nucleotide-binding domain FIV04_10250 PF00520 Ion transport protein FIV04_10255 PF02774 Semialdehyde dehydrogenase, dimerisation domain FIV04_10255 PF01118 Semialdehyde dehydrogenase, NAD binding domain FIV04_10260 PF03553 Na+/H+ antiporter family FIV04_10280 PF00884 Sulfatase FIV04_10280 PF11893 Domain of unknown function (DUF3413) FIV04_10295 PF00850 Histone deacetylase domain FIV04_10300 PF00106 short chain dehydrogenase FIV04_10310 PF01751 Toprim domain FIV04_10310 PF01131 DNA topoisomerase FIV04_10315 PF00881 Nitroreductase family FIV04_10320 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIV04_10320 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FIV04_10325 PF01343 Peptidase family S49 FIV04_10330 PF00710 Asparaginase, N-terminal FIV04_10330 PF17763 Glutaminase/Asparaginase C-terminal domain FIV04_10335 PF07023 Protein of unknown function (DUF1315) FIV04_10345 PF01641 SelR domain FIV04_10350 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FIV04_10350 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FIV04_10355 PF01263 Aldose 1-epimerase FIV04_10360 PF13426 PAS domain FIV04_10360 PF08447 PAS fold FIV04_10360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_10365 PF13847 Methyltransferase domain FIV04_10380 PF02028 BCCT, betaine/carnitine/choline family transporter FIV04_10390 PF03692 Putative zinc- or iron-chelating domain FIV04_10400 PF02575 YbaB/EbfC DNA-binding family FIV04_10405 PF12169 DNA polymerase III subunits gamma and tau domain III FIV04_10405 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding FIV04_10405 PF12170 DNA polymerase III tau subunit V interacting with alpha FIV04_10425 PF00072 Response regulator receiver domain FIV04_10430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_10430 PF03466 LysR substrate binding domain FIV04_10435 PF00156 Phosphoribosyl transferase domain FIV04_10440 PF02674 Colicin V production protein FIV04_10445 PF05036 Sporulation related domain FIV04_10450 PF02875 Mur ligase family, glutamate ligase domain FIV04_10450 PF08245 Mur ligase middle domain FIV04_10455 PF17848 Acetyl-coA carboxylase zinc finger domain FIV04_10455 PF01039 Carboxyl transferase domain FIV04_10470 PF02774 Semialdehyde dehydrogenase, dimerisation domain FIV04_10470 PF01118 Semialdehyde dehydrogenase, NAD binding domain FIV04_10480 PF02801 Beta-ketoacyl synthase, C-terminal domain FIV04_10480 PF00109 Beta-ketoacyl synthase, N-terminal domain FIV04_10485 PF05430 S-adenosyl-L-methionine-dependent methyltransferase FIV04_10485 PF01266 FAD dependent oxidoreductase FIV04_10490 PF03358 NADPH-dependent FMN reductase FIV04_10495 PF08891 YfcL protein FIV04_10500 PF04315 Elongation factor P hydroxylase FIV04_10505 PF03458 UPF0126 domain FIV04_10510 PF01264 Chorismate synthase FIV04_10525 PF03793 PASTA domain FIV04_10525 PF00069 Protein kinase domain FIV04_10540 PF07670 Nucleoside recognition FIV04_10540 PF01773 Na+ dependent nucleoside transporter N-terminus FIV04_10540 PF07662 Na+ dependent nucleoside transporter C-terminus FIV04_10545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_10545 PF03466 LysR substrate binding domain FIV04_10550 PF13406 Transglycosylase SLT domain FIV04_10565 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain FIV04_10570 PF03776 Septum formation topological specificity factor MinE FIV04_10580 PF01612 3'-5' exonuclease FIV04_10580 PF00570 HRDC domain FIV04_10585 PF00501 AMP-binding enzyme FIV04_10585 PF13193 AMP-binding enzyme C-terminal domain FIV04_10590 PF00561 alpha/beta hydrolase fold FIV04_10595 PF03843 Outer membrane lipoprotein Slp family FIV04_10605 PF00814 Glycoprotease family FIV04_10610 PF13307 Helicase C-terminal domain FIV04_10610 PF04851 Type III restriction enzyme, res subunit FIV04_10615 PF00551 Formyl transferase FIV04_10615 PF01842 ACT domain FIV04_10620 PF06185 YecM protein FIV04_10625 PF03485 Arginyl tRNA synthetase N terminal domain FIV04_10625 PF00750 tRNA synthetases class I (R) FIV04_10625 PF05746 DALR anticodon binding domain FIV04_10640 PF07664 Ferrous iron transport protein B C terminus FIV04_10640 PF07670 Nucleoside recognition FIV04_10640 PF02421 Ferrous iron transport protein B FIV04_10645 PF04023 FeoA domain FIV04_10650 PF12833 Helix-turn-helix domain FIV04_10655 PF01297 Zinc-uptake complex component A periplasmic FIV04_10660 PF00005 ABC transporter FIV04_10665 PF00950 ABC 3 transport family FIV04_10670 PF02629 CoA binding domain FIV04_10670 PF00549 CoA-ligase FIV04_10680 PF02817 e3 binding domain FIV04_10680 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FIV04_10680 PF00364 Biotin-requiring enzyme FIV04_10685 PF02779 Transketolase, pyrimidine binding domain FIV04_10685 PF16870 2-oxoglutarate dehydrogenase C-terminal FIV04_10685 PF00676 Dehydrogenase E1 component FIV04_10685 PF16078 2-oxoglutarate dehydrogenase N-terminus FIV04_10690 PF13085 2Fe-2S iron-sulfur cluster binding domain FIV04_10695 PF00890 FAD binding domain FIV04_10695 PF02910 Fumarate reductase flavoprotein C-term FIV04_10700 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FIV04_10705 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FIV04_10710 PF00285 Citrate synthase, C-terminal domain FIV04_10715 PF01784 NIF3 (NGG1p interacting factor 3) FIV04_10725 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FIV04_10725 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FIV04_10725 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FIV04_10725 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FIV04_10735 PF12697 Alpha/beta hydrolase family FIV04_10745 PF00258 Flavodoxin FIV04_10755 PF01475 Ferric uptake regulator family FIV04_10760 PF07963 Prokaryotic N-terminal methylation motif FIV04_10760 PF00114 Pilin (bacterial filament) FIV04_10770 PF00367 phosphotransferase system, EIIB FIV04_10770 PF02378 Phosphotransferase system, EIIC FIV04_10770 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 FIV04_10775 PF01979 Amidohydrolase family FIV04_10780 PF01047 MarR family FIV04_10780 PF00480 ROK family FIV04_10785 PF02254 TrkA-N domain FIV04_10785 PF00999 Sodium/hydrogen exchanger family FIV04_10790 PF13537 Glutamine amidotransferase domain FIV04_10790 PF00733 Asparagine synthase FIV04_10795 PF02357 Transcription termination factor nusG FIV04_10800 PF00854 POT family FIV04_10820 PF00486 Transcriptional regulatory protein, C terminal FIV04_10825 PF17323 Trans-membrane regulatory protein ToxS FIV04_10835 PF12850 Calcineurin-like phosphoesterase superfamily domain FIV04_10850 PF07556 Protein of unknown function (DUF1538) FIV04_10855 PF07556 Protein of unknown function (DUF1538) FIV04_10860 PF01370 NAD dependent epimerase/dehydratase family FIV04_10860 PF08338 Domain of unknown function (DUF1731) FIV04_10865 PF00106 short chain dehydrogenase FIV04_10870 PF00085 Thioredoxin FIV04_10875 PF16200 C-terminal region of band_7 FIV04_10875 PF01145 SPFH domain / Band 7 family FIV04_10885 PF13411 MerR HTH family regulatory protein FIV04_10900 PF13609 Gram-negative porin FIV04_10910 PF04354 ZipA, C-terminal FtsZ-binding domain FIV04_10920 PF00291 Pyridoxal-phosphate dependent enzyme FIV04_10925 PF00381 PTS HPr component phosphorylation site FIV04_10930 PF02896 PEP-utilising enzyme, TIM barrel domain FIV04_10930 PF05524 PEP-utilising enzyme, N-terminal FIV04_10930 PF00391 PEP-utilising enzyme, mobile domain FIV04_10935 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 FIV04_10940 PF00669 Bacterial flagellin N-terminal helical region FIV04_10940 PF00700 Bacterial flagellin C-terminal helical region FIV04_10940 PF07196 Flagellin hook IN motif FIV04_10945 PF07196 Flagellin hook IN motif FIV04_10945 PF00700 Bacterial flagellin C-terminal helical region FIV04_10945 PF00669 Bacterial flagellin N-terminal helical region FIV04_10950 PF07196 Flagellin hook IN motif FIV04_10950 PF00700 Bacterial flagellin C-terminal helical region FIV04_10950 PF00669 Bacterial flagellin N-terminal helical region FIV04_10955 PF04261 Dyp-type peroxidase family FIV04_10975 PF03960 ArsC family FIV04_10985 PF02557 D-alanyl-D-alanine carboxypeptidase FIV04_11000 PF00701 Dihydrodipicolinate synthetase family FIV04_11005 PF01842 ACT domain FIV04_11010 PF00578 AhpC/TSA family FIV04_11015 PF01594 AI-2E family transporter FIV04_11025 PF01435 Peptidase family M48 FIV04_11025 PF13181 Tetratricopeptide repeat FIV04_11030 PF03960 ArsC family FIV04_11035 PF03358 NADPH-dependent FMN reductase FIV04_11050 PF00860 Permease family FIV04_11065 PF00551 Formyl transferase FIV04_11070 PF13230 Glutamine amidotransferases class-II FIV04_11075 PF13580 SIS domain FIV04_11080 PF09317 Domain of unknown function (DUF1974) FIV04_11080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FIV04_11080 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FIV04_11080 PF02770 Acyl-CoA dehydrogenase, middle domain FIV04_11090 PF00929 Exonuclease FIV04_11095 PF00075 RNase H FIV04_11100 PF08241 Methyltransferase domain FIV04_11110 PF01464 Transglycosylase SLT domain FIV04_11110 PF01476 LysM domain FIV04_11125 PF00543 Nitrogen regulatory protein P-II FIV04_11130 PF00034 Cytochrome c FIV04_11145 PF14579 Helix-hairpin-helix motif FIV04_11145 PF07733 Bacterial DNA polymerase III alpha NTPase domain FIV04_11145 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FIV04_11145 PF02811 PHP domain FIV04_11145 PF01336 OB-fold nucleic acid binding domain FIV04_11155 PF02684 Lipid-A-disaccharide synthetase FIV04_11170 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD FIV04_11170 PF00132 Bacterial transferase hexapeptide (six repeats) FIV04_11175 PF03938 Outer membrane protein (OmpH-like) FIV04_11180 PF01103 Surface antigen FIV04_11180 PF07244 Surface antigen variable number repeat FIV04_11185 PF17820 PDZ domain FIV04_11185 PF02163 Peptidase family M50 FIV04_11190 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain FIV04_11190 PF13288 DXP reductoisomerase C-terminal domain FIV04_11190 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase FIV04_11200 PF01255 Putative undecaprenyl diphosphate synthase FIV04_11205 PF01765 Ribosome recycling factor FIV04_11210 PF00696 Amino acid kinase family FIV04_11215 PF00889 Elongation factor TS FIV04_11220 PF00318 Ribosomal protein S2 FIV04_11230 PF00557 Metallopeptidase family M24 FIV04_11245 PF00849 RNA pseudouridylate synthase FIV04_11250 PF04287 tRNA pseudouridine synthase C FIV04_11290 PF03806 AbgT putative transporter family FIV04_11300 PF01980 tRNA-methyltransferase O FIV04_11300 PF18389 TrmO C-terminal domain FIV04_11330 PF00464 Serine hydroxymethyltransferase FIV04_11335 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) FIV04_11335 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 FIV04_11350 PF16657 Maltogenic Amylase, C-terminal domain FIV04_11350 PF00128 Alpha amylase, catalytic domain FIV04_11355 PF00367 phosphotransferase system, EIIB FIV04_11355 PF02378 Phosphotransferase system, EIIC FIV04_11360 PF00356 Bacterial regulatory proteins, lacI family FIV04_11375 PF09383 NIL domain FIV04_11375 PF00005 ABC transporter FIV04_11380 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_11385 PF03180 NLPA lipoprotein FIV04_11390 PF02264 LamB porin FIV04_11395 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) FIV04_11415 PF17158 Membrane-associated sensor, integral membrane domain FIV04_11415 PF00990 Diguanylate cyclase, GGDEF domain FIV04_11420 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases FIV04_11420 PF11892 Domain of unknown function (DUF3412) FIV04_11420 PF03641 Possible lysine decarboxylase FIV04_11430 PF01223 DNA/RNA non-specific endonuclease FIV04_11440 PF04241 Protein of unknown function (DUF423) FIV04_11450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_11450 PF03466 LysR substrate binding domain FIV04_11460 PF02798 Glutathione S-transferase, N-terminal domain FIV04_11470 PF13677 Membrane MotB of proton-channel complex MotA/MotB FIV04_11470 PF00691 OmpA family FIV04_11475 PF01618 MotA/TolQ/ExbB proton channel family FIV04_11485 PF00348 Polyprenyl synthetase FIV04_11500 PF04608 Phosphatidylglycerophosphatase A FIV04_11505 PF02769 AIR synthase related protein, C-terminal domain FIV04_11505 PF00586 AIR synthase related protein, N-terminal domain FIV04_11515 PF00885 6,7-dimethyl-8-ribityllumazine synthase FIV04_11520 PF00925 GTP cyclohydrolase II FIV04_11520 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase FIV04_11525 PF00677 Lumazine binding domain FIV04_11530 PF01872 RibD C-terminal domain FIV04_11530 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FIV04_11545 PF00696 Amino acid kinase family FIV04_11545 PF01472 PUA domain FIV04_11550 PF07417 Sigma factor-binding transcriptional regulator Crl FIV04_11565 PF00860 Permease family FIV04_11575 PF01546 Peptidase family M20/M25/M40 FIV04_11575 PF07687 Peptidase dimerisation domain FIV04_11595 PF00962 Adenosine/AMP deaminase FIV04_11610 PF01588 Putative tRNA binding domain FIV04_11615 PF00356 Bacterial regulatory proteins, lacI family FIV04_11620 PF01263 Aldose 1-epimerase FIV04_11625 PF00288 GHMP kinases N terminal domain FIV04_11625 PF08544 GHMP kinases C terminal FIV04_11625 PF10509 Galactokinase galactose-binding signature FIV04_11630 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain FIV04_11630 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain FIV04_11635 PF16363 GDP-mannose 4,6 dehydratase FIV04_11640 PF00356 Bacterial regulatory proteins, lacI family FIV04_11645 PF00703 Glycosyl hydrolases family 2 FIV04_11645 PF02836 Glycosyl hydrolases family 2, TIM barrel domain FIV04_11645 PF02837 Glycosyl hydrolases family 2, sugar binding domain FIV04_11645 PF16353 Domain of unknown function(DUF4981) FIV04_11645 PF02929 Beta galactosidase small chain FIV04_11650 PF04074 YhcH/YjgK/YiaL FIV04_11655 PF13520 Amino acid permease FIV04_11660 PF13520 Amino acid permease FIV04_11670 PF01204 Trehalase FIV04_11675 PF00703 Glycosyl hydrolases family 2 FIV04_11675 PF02836 Glycosyl hydrolases family 2, TIM barrel domain FIV04_11675 PF02837 Glycosyl hydrolases family 2, sugar binding domain FIV04_11675 PF16353 Domain of unknown function(DUF4981) FIV04_11675 PF02929 Beta galactosidase small chain FIV04_11685 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_11695 PF00005 ABC transporter FIV04_11695 PF17912 MalK OB fold domain FIV04_11700 PF01554 MatE FIV04_11705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_11705 PF03466 LysR substrate binding domain FIV04_11710 PF02417 Chromate transporter FIV04_11750 PF00437 Type II/IV secretion system protein FIV04_11765 PF00263 Bacterial type II and III secretion system protein FIV04_11765 PF04972 BON domain FIV04_11765 PF13629 Pilus formation protein N terminal region FIV04_11785 PF02311 AraC-like ligand binding domain FIV04_11785 PF12833 Helix-turn-helix domain FIV04_11790 PF00501 AMP-binding enzyme FIV04_11800 PF03466 LysR substrate binding domain FIV04_11800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_11805 PF03144 Elongation factor Tu domain 2 FIV04_11805 PF00679 Elongation factor G C-terminus FIV04_11805 PF14492 Elongation Factor G, domain II FIV04_11805 PF03764 Elongation factor G, domain IV FIV04_11805 PF00009 Elongation factor Tu GTP binding domain FIV04_11810 PF18073 Rubredoxin metal binding domain FIV04_11820 PF18429 Domain of unknown function (DUF5609) FIV04_11830 PF01048 Phosphorylase superfamily FIV04_11835 PF01676 Metalloenzyme superfamily FIV04_11840 PF00591 Glycosyl transferase family, a/b domain FIV04_11840 PF02885 Glycosyl transferase family, helical bundle domain FIV04_11840 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain FIV04_11850 PF01773 Na+ dependent nucleoside transporter N-terminus FIV04_11850 PF07670 Nucleoside recognition FIV04_11850 PF07662 Na+ dependent nucleoside transporter C-terminus FIV04_11855 PF01026 TatD related DNase FIV04_11870 PF00563 EAL domain FIV04_11870 PF00990 Diguanylate cyclase, GGDEF domain FIV04_11870 PF03707 Bacterial signalling protein N terminal repeat FIV04_11875 PF12849 PBP superfamily domain FIV04_11880 PF00583 Acetyltransferase (GNAT) family FIV04_11890 PF13508 Acetyltransferase (GNAT) domain FIV04_11900 PF00563 EAL domain FIV04_11900 PF03707 Bacterial signalling protein N terminal repeat FIV04_11900 PF00990 Diguanylate cyclase, GGDEF domain FIV04_11915 PF01554 MatE FIV04_11925 PF13181 Tetratricopeptide repeat FIV04_11925 PF07719 Tetratricopeptide repeat FIV04_11930 PF00575 S1 RNA binding domain FIV04_11930 PF01138 3' exoribonuclease family, domain 1 FIV04_11930 PF03725 3' exoribonuclease family, domain 2 FIV04_11930 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain FIV04_11930 PF00013 KH domain FIV04_11935 PF00312 Ribosomal protein S15 FIV04_11945 PF02033 Ribosome-binding factor A FIV04_11950 PF00009 Elongation factor Tu GTP binding domain FIV04_11950 PF04760 Translation initiation factor IF-2, N-terminal region FIV04_11950 PF08364 Bacterial translation initiation factor IF-2 associated region FIV04_11950 PF11987 Translation-initiation factor 2 FIV04_11955 PF00575 S1 RNA binding domain FIV04_11955 PF08529 NusA N-terminal domain FIV04_11955 PF13184 NusA-like KH domain FIV04_11975 PF03840 Preprotein translocase SecG subunit FIV04_11985 PF00809 Pterin binding enzyme FIV04_11990 PF17862 AAA+ lid domain FIV04_11990 PF01434 Peptidase family M41 FIV04_11990 PF06480 FtsH Extracellular FIV04_11990 PF00004 ATPase family associated with various cellular activities (AAA) FIV04_12000 PF01985 CRS1 / YhbY (CRM) domain FIV04_12005 PF01272 Transcription elongation factor, GreA/GreB, C-term FIV04_12005 PF03449 Transcription elongation factor, N-terminal FIV04_12010 PF13609 Gram-negative porin FIV04_12015 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family FIV04_12020 PF01769 Divalent cation transporter FIV04_12020 PF00571 CBS domain FIV04_12020 PF03448 MgtE intracellular N domain FIV04_12025 PF00579 tRNA synthetases class I (W and Y) FIV04_12030 PF01476 LysM domain FIV04_12030 PF08525 Opacity-associated protein A N-terminal motif FIV04_12030 PF01551 Peptidase family M23 FIV04_12035 PF00873 AcrB/AcrD/AcrF family FIV04_12060 PF01594 AI-2E family transporter FIV04_12065 PF05175 Methyltransferase small domain FIV04_12065 PF08468 Methyltransferase small domain N-terminal FIV04_12070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_12070 PF09308 LuxQ, periplasmic FIV04_12070 PF00512 His Kinase A (phospho-acceptor) domain FIV04_12070 PF00072 Response regulator receiver domain FIV04_12075 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FIV04_12080 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_12085 PF12911 N-terminal TM domain of oligopeptide transport permease C FIV04_12085 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_12090 PF00005 ABC transporter FIV04_12090 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FIV04_12095 PF00005 ABC transporter FIV04_12095 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FIV04_12105 PF01869 BadF/BadG/BcrA/BcrD ATPase family FIV04_12110 PF00728 Glycosyl hydrolase family 20, catalytic domain FIV04_12110 PF02838 Glycosyl hydrolase family 20, domain 2 FIV04_12115 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain FIV04_12115 PF06165 Glycosyltransferase family 36 FIV04_12120 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FIV04_12120 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FIV04_12120 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FIV04_12120 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FIV04_12125 PF08402 TOBE domain FIV04_12125 PF00005 ABC transporter FIV04_12135 PF13416 Bacterial extracellular solute-binding protein FIV04_12140 PF00909 Ammonium Transporter Family FIV04_12145 PF00543 Nitrogen regulatory protein P-II FIV04_12150 PF06062 Uncharacterised protein family (UPF0231) FIV04_12155 PF11791 Aconitate B N-terminal domain FIV04_12155 PF06434 Aconitate hydratase 2 N-terminus FIV04_12155 PF00330 Aconitase family (aconitate hydratase) FIV04_12160 PF01734 Patatin-like phospholipase FIV04_12165 PF00912 Transglycosylase FIV04_12165 PF14814 Bifunctional transglycosylase second domain FIV04_12165 PF00905 Penicillin binding protein transpeptidase domain FIV04_12170 PF00271 Helicase conserved C-terminal domain FIV04_12170 PF04408 Helicase associated domain (HA2) FIV04_12170 PF08482 ATP-dependent helicase C-terminal FIV04_12170 PF00270 DEAD/DEAH box helicase FIV04_12180 PF01258 Prokaryotic dksA/traR C4-type zinc finger FIV04_12185 PF00749 tRNA synthetases class I (E and Q), catalytic domain FIV04_12190 PF12626 Polymerase A arginine-rich C-terminus FIV04_12190 PF12627 Probable RNA and SrmB- binding site of polymerase A FIV04_12190 PF01743 Poly A polymerase head domain FIV04_12195 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) FIV04_12210 PF01061 ABC-2 type transporter FIV04_12215 PF00005 ABC transporter FIV04_12220 PF01740 STAS domain FIV04_12220 PF00916 Sulfate permease family FIV04_12225 PF00484 Carbonic anhydrase FIV04_12230 PF00156 Phosphoribosyl transferase domain FIV04_12235 PF00440 Bacterial regulatory proteins, tetR family FIV04_12240 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FIV04_12240 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIV04_12245 PF02817 e3 binding domain FIV04_12245 PF00364 Biotin-requiring enzyme FIV04_12245 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FIV04_12250 PF00456 Transketolase, thiamine diphosphate binding domain FIV04_12250 PF17831 Pyruvate dehydrogenase E1 component middle domain FIV04_12255 PF07729 FCD domain FIV04_12255 PF00392 Bacterial regulatory proteins, gntR family FIV04_12260 PF01510 N-acetylmuramoyl-L-alanine amidase FIV04_12265 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain FIV04_12265 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain FIV04_12270 PF07963 Prokaryotic N-terminal methylation motif FIV04_12270 PF00114 Pilin (bacterial filament) FIV04_12275 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain FIV04_12275 PF00437 Type II/IV secretion system protein FIV04_12280 PF00482 Type II secretion system (T2SS), protein F FIV04_12285 PF06750 Bacterial Peptidase A24 N-terminal domain FIV04_12285 PF01478 Type IV leader peptidase family FIV04_12290 PF01121 Dephospho-CoA kinase FIV04_12300 PF03884 DNA gyrase inhibitor YacG FIV04_12305 PF01245 Ribosomal protein L19 FIV04_12315 PF01782 RimM N-terminal domain FIV04_12315 PF05239 PRC-barrel domain FIV04_12320 PF00886 Ribosomal protein S16 FIV04_12325 PF00448 SRP54-type protein, GTPase domain FIV04_12325 PF02881 SRP54-type protein, helical bundle domain FIV04_12325 PF02978 Signal peptide binding domain FIV04_12330 PF01578 Cytochrome C assembly protein FIV04_12335 PF03471 Transporter associated domain FIV04_12335 PF01595 Cyclin M transmembrane N-terminal domain FIV04_12335 PF00571 CBS domain FIV04_12340 PF02664 S-Ribosylhomocysteinase (LuxS) FIV04_12350 PF04262 Glutamate-cysteine ligase FIV04_12355 PF00675 Insulinase (Peptidase family M16) FIV04_12355 PF05193 Peptidase M16 inactive domain FIV04_12360 PF09335 SNARE associated Golgi protein FIV04_12365 PF00107 Zinc-binding dehydrogenase FIV04_12365 PF16884 N-terminal domain of oxidoreductase FIV04_12370 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit FIV04_12375 PF02436 Conserved carboxylase domain FIV04_12375 PF00364 Biotin-requiring enzyme FIV04_12375 PF00682 HMGL-like FIV04_12380 PF04277 Oxaloacetate decarboxylase, gamma chain FIV04_12435 PF02599 Global regulator protein family FIV04_12440 PF00696 Amino acid kinase family FIV04_12440 PF01842 ACT domain FIV04_12440 PF13840 ACT domain FIV04_12445 PF02272 DHHA1 domain FIV04_12445 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FIV04_12445 PF01411 tRNA synthetases class II (A) FIV04_12455 PF08534 Redoxin FIV04_12465 PF00154 recA bacterial DNA recombination protein FIV04_12470 PF02464 Competence-damaged protein FIV04_12480 PF04542 Sigma-70 region 2 FIV04_12480 PF04545 Sigma-70, region 4 FIV04_12480 PF04539 Sigma-70 region 3 FIV04_12480 PF00140 Sigma-70 factor, region 1.2 FIV04_12485 PF01476 LysM domain FIV04_12485 PF01551 Peptidase family M23 FIV04_12495 PF01975 Survival protein SurE FIV04_12500 PF01142 tRNA pseudouridine synthase D (TruD) FIV04_12505 PF02542 YgbB family FIV04_12520 PF00113 Enolase, C-terminal TIM barrel domain FIV04_12520 PF03952 Enolase, N-terminal domain FIV04_12525 PF00117 Glutamine amidotransferase class-I FIV04_12525 PF06418 CTP synthase N-terminus FIV04_12530 PF03819 MazG nucleotide pyrophosphohydrolase domain FIV04_12535 PF02824 TGS domain FIV04_12535 PF04607 Region found in RelA / SpoT proteins FIV04_12535 PF13291 ACT domain FIV04_12545 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FIV04_12545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_12545 PF00072 Response regulator receiver domain FIV04_12545 PF00672 HAMP domain FIV04_12545 PF01627 Hpt domain FIV04_12545 PF00512 His Kinase A (phospho-acceptor) domain FIV04_12555 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ FIV04_12565 PF07650 KH domain FIV04_12565 PF01926 50S ribosome-binding GTPase FIV04_12575 PF10502 Signal peptidase, peptidase S26 FIV04_12580 PF06421 GTP-binding protein LepA C-terminus FIV04_12580 PF03144 Elongation factor Tu domain 2 FIV04_12580 PF00679 Elongation factor G C-terminus FIV04_12580 PF00009 Elongation factor Tu GTP binding domain FIV04_12590 PF03888 MucB/RseB N-terminal domain FIV04_12590 PF17188 MucB/RseB C-terminal domain FIV04_12595 PF03873 Anti sigma-E protein RseA, C-terminal domain FIV04_12595 PF03872 Anti sigma-E protein RseA, N-terminal domain FIV04_12600 PF08281 Sigma-70, region 4 FIV04_12600 PF04542 Sigma-70 region 2 FIV04_12605 PF02910 Fumarate reductase flavoprotein C-term FIV04_12605 PF00890 FAD binding domain FIV04_12615 PF03937 Flavinator of succinate dehydrogenase FIV04_12625 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FIV04_12625 PF03129 Anticodon binding domain FIV04_12625 PF04073 Aminoacyl-tRNA editing domain FIV04_12635 PF01494 FAD binding domain FIV04_12640 PF01494 FAD binding domain FIV04_12650 PF05164 Cell division protein ZapA FIV04_12660 PF01812 5-formyltetrahydrofolate cyclo-ligase family FIV04_12670 PF01842 ACT domain FIV04_12670 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FIV04_12670 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FIV04_12680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_12680 PF03466 LysR substrate binding domain FIV04_12685 PF01810 LysE type translocator FIV04_12690 PF00924 Mechanosensitive ion channel FIV04_12690 PF05552 Conserved TM helix FIV04_12695 PF01116 Fructose-bisphosphate aldolase class-II FIV04_12700 PF00162 Phosphoglycerate kinase FIV04_12705 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FIV04_12705 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FIV04_12715 PF02780 Transketolase, C-terminal domain FIV04_12715 PF02779 Transketolase, pyrimidine binding domain FIV04_12715 PF00456 Transketolase, thiamine diphosphate binding domain FIV04_12720 PF02773 S-adenosylmethionine synthetase, C-terminal domain FIV04_12720 PF02772 S-adenosylmethionine synthetase, central domain FIV04_12720 PF00438 S-adenosylmethionine synthetase, N-terminal domain FIV04_12735 PF04231 Endonuclease I FIV04_12745 PF04452 RNA methyltransferase FIV04_12750 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain FIV04_12750 PF02951 Prokaryotic glutathione synthetase, N-terminal domain FIV04_12760 PF03652 Holliday junction resolvase FIV04_12770 PF00437 Type II/IV secretion system protein FIV04_12775 PF00437 Type II/IV secretion system protein FIV04_12780 PF01168 Alanine racemase, N-terminal domain FIV04_12785 PF14748 Pyrroline-5-carboxylate reductase dimerisation FIV04_12785 PF03807 NADP oxidoreductase coenzyme F420-dependent FIV04_12790 PF02325 YGGT family FIV04_12795 PF02594 Uncharacterised ACR, YggU family COG1872 FIV04_12805 PF01725 Ham1 family FIV04_12810 PF06969 HemN C-terminal domain FIV04_12810 PF04055 Radical SAM superfamily FIV04_12820 PF02390 Putative methyltransferase FIV04_12825 PF00633 Helix-hairpin-helix motif FIV04_12825 PF00730 HhH-GPD superfamily base excision DNA repair protein FIV04_12825 PF14815 NUDIX domain FIV04_12835 PF01464 Transglycosylase SLT domain FIV04_12835 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain FIV04_12875 PF00672 HAMP domain FIV04_12875 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_12875 PF17200 Single Cache domain 2 FIV04_12945 PF00072 Response regulator receiver domain FIV04_12955 PF05230 MASE2 domain FIV04_12955 PF00990 Diguanylate cyclase, GGDEF domain FIV04_12960 PF08769 Sporulation initiation factor Spo0A C terminal FIV04_12960 PF00072 Response regulator receiver domain FIV04_12970 PF09423 PhoD-like phosphatase FIV04_12970 PF16655 PhoD-like phosphatase, N-terminal domain FIV04_12985 PF03739 Lipopolysaccharide export system permease LptF/LptG FIV04_12990 PF03739 Lipopolysaccharide export system permease LptF/LptG FIV04_12995 PF02789 Cytosol aminopeptidase family, N-terminal domain FIV04_12995 PF00883 Cytosol aminopeptidase family, catalytic domain FIV04_13000 PF04364 DNA polymerase III chi subunit, HolC FIV04_13005 PF00133 tRNA synthetases class I (I, L, M and V) FIV04_13005 PF08264 Anticodon-binding domain of tRNA FIV04_13005 PF10458 Valyl tRNA synthetase tRNA binding arm FIV04_13010 PF01435 Peptidase family M48 FIV04_13010 PF07720 Tetratricopeptide repeat FIV04_13015 PF05987 Bacterial protein of unknown function (DUF898) FIV04_13025 PF00583 Acetyltransferase (GNAT) family FIV04_13035 PF06877 Regulator of ribonuclease activity B FIV04_13045 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FIV04_13045 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FIV04_13050 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FIV04_13050 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FIV04_13055 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain FIV04_13055 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain FIV04_13060 PF01042 Endoribonuclease L-PSP FIV04_13065 PF01553 Acyltransferase FIV04_13075 PF01722 BolA-like protein FIV04_13085 PF05494 MlaC protein FIV04_13090 PF02470 MlaD protein FIV04_13095 PF02405 Permease MlaE FIV04_13100 PF00005 ABC transporter FIV04_13105 PF01699 Sodium/calcium exchanger protein FIV04_13110 PF00571 CBS domain FIV04_13110 PF01380 SIS domain FIV04_13125 PF03968 OstA-like protein FIV04_13130 PF00005 ABC transporter FIV04_13130 PF12399 Branched-chain amino acid ATP-binding cassette transporter FIV04_13135 PF00309 Sigma-54 factor, Activator interacting domain (AID) FIV04_13135 PF04552 Sigma-54, DNA binding domain FIV04_13135 PF04963 Sigma-54 factor, core binding domain FIV04_13140 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein FIV04_13145 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FIV04_13155 PF00381 PTS HPr component phosphorylation site FIV04_13160 PF01769 Divalent cation transporter FIV04_13160 PF03448 MgtE intracellular N domain FIV04_13160 PF00571 CBS domain FIV04_13165 PF01523 Putative modulator of DNA gyrase FIV04_13175 PF00005 ABC transporter FIV04_13180 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_13190 PF02441 Flavoprotein FIV04_13195 PF02875 Mur ligase family, glutamate ligase domain FIV04_13195 PF08245 Mur ligase middle domain FIV04_13195 PF01225 Mur ligase family, catalytic domain FIV04_13210 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like FIV04_13215 PF04357 TamB, inner membrane protein subunit of TAM complex FIV04_13220 PF01103 Surface antigen FIV04_13220 PF17243 POTRA domain TamA domain 1 FIV04_13220 PF07244 Surface antigen variable number repeat FIV04_13225 PF01625 Peptide methionine sulfoxide reductase FIV04_13230 PF06526 Protein of unknown function (DUF1107) FIV04_13235 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) FIV04_13245 PF00005 ABC transporter FIV04_13275 PF03600 Citrate transporter FIV04_13275 PF02080 TrkA-C domain FIV04_13285 PF01507 Phosphoadenosine phosphosulfate reductase family FIV04_13290 PF02872 5'-nucleotidase, C-terminal domain FIV04_13290 PF00149 Calcineurin-like phosphoesterase FIV04_13300 PF02875 Mur ligase family, glutamate ligase domain FIV04_13300 PF08245 Mur ligase middle domain FIV04_13300 PF08443 RimK-like ATP-grasp domain FIV04_13335 PF13673 Acetyltransferase (GNAT) domain FIV04_13345 PF08525 Opacity-associated protein A N-terminal motif FIV04_13345 PF04225 Opacity-associated protein A LysM-like domain FIV04_13350 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FIV04_13350 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FIV04_13385 PF00416 Ribosomal protein S13/S18 FIV04_13390 PF00444 Ribosomal protein L36 FIV04_13395 PF00344 SecY translocase FIV04_13405 PF00327 Ribosomal protein L30p/L7e FIV04_13415 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast FIV04_13420 PF00347 Ribosomal protein L6 FIV04_13430 PF00253 Ribosomal protein S14p/S29e FIV04_13435 PF00281 Ribosomal protein L5 FIV04_13435 PF00673 ribosomal L5P family C-terminus FIV04_13445 PF00238 Ribosomal protein L14p/L23e FIV04_13455 PF00831 Ribosomal L29 protein FIV04_13460 PF00252 Ribosomal protein L16p/L10e FIV04_13465 PF07650 KH domain FIV04_13465 PF00189 Ribosomal protein S3, C-terminal domain FIV04_13470 PF00237 Ribosomal protein L22p/L17e FIV04_13500 PF00338 Ribosomal protein S10p/S20e FIV04_13505 PF00210 Ferritin-like domain FIV04_13510 PF04324 BFD-like [2Fe-2S] binding domain FIV04_13515 PF00009 Elongation factor Tu GTP binding domain FIV04_13515 PF03143 Elongation factor Tu C-terminal domain FIV04_13515 PF03144 Elongation factor Tu domain 2 FIV04_13520 PF03764 Elongation factor G, domain IV FIV04_13520 PF00679 Elongation factor G C-terminus FIV04_13520 PF14492 Elongation Factor G, domain II FIV04_13520 PF03144 Elongation factor Tu domain 2 FIV04_13520 PF00009 Elongation factor Tu GTP binding domain FIV04_13525 PF00177 Ribosomal protein S7p/S5e FIV04_13530 PF00164 Ribosomal protein S12/S23 FIV04_13540 PF02635 DsrE/DsrF-like family FIV04_13545 PF02635 DsrE/DsrF-like family FIV04_13550 PF13309 HTH domain FIV04_13550 PF08348 YheO-like PAS domain FIV04_13555 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FIV04_13555 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FIV04_13570 PF01112 Asparaginase FIV04_13575 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FIV04_13585 PF02254 TrkA-N domain FIV04_13585 PF00999 Sodium/hydrogen exchanger family FIV04_13590 PF02525 Flavodoxin-like fold FIV04_13595 PF12848 ABC transporter FIV04_13595 PF00005 ABC transporter FIV04_13605 PF00561 alpha/beta hydrolase fold FIV04_13615 PF00485 Phosphoribulokinase / Uridine kinase family FIV04_13620 PF13545 Crp-like helix-turn-helix domain FIV04_13620 PF00027 Cyclic nucleotide-binding domain FIV04_13635 PF04958 Arginine N-succinyltransferase beta subunit FIV04_13640 PF00202 Aminotransferase class-III FIV04_13645 PF00117 Glutamine amidotransferase class-I FIV04_13650 PF04231 Endonuclease I FIV04_13670 PF00579 tRNA synthetases class I (W and Y) FIV04_13675 PF13419 Haloacid dehalogenase-like hydrolase FIV04_13680 PF00834 Ribulose-phosphate 3 epimerase family FIV04_13685 PF02086 D12 class N6 adenine-specific DNA methyltransferase FIV04_13700 PF01202 Shikimate kinase FIV04_13705 PF00263 Bacterial type II and III secretion system protein FIV04_13705 PF11741 AMIN domain FIV04_13705 PF03958 Bacterial type II/III secretion system short domain FIV04_13705 PF07660 Secretin and TonB N terminus short domain FIV04_13730 PF00905 Penicillin binding protein transpeptidase domain FIV04_13730 PF17092 Penicillin-binding protein OB-like domain FIV04_13730 PF00912 Transglycosylase FIV04_13735 PF03466 LysR substrate binding domain FIV04_13735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_13740 PF00462 Glutaredoxin FIV04_13740 PF08534 Redoxin FIV04_13745 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FIV04_13745 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIV04_13750 PF01042 Endoribonuclease L-PSP FIV04_13755 PF00583 Acetyltransferase (GNAT) family FIV04_13755 PF00206 Lyase FIV04_13755 PF14698 Argininosuccinate lyase C-terminal FIV04_13760 PF00764 Arginosuccinate synthase FIV04_13765 PF00696 Amino acid kinase family FIV04_13770 PF02774 Semialdehyde dehydrogenase, dimerisation domain FIV04_13770 PF01118 Semialdehyde dehydrogenase, NAD binding domain FIV04_13795 PF02219 Methylenetetrahydrofolate reductase FIV04_13800 PF03447 Homoserine dehydrogenase, NAD binding domain FIV04_13800 PF00742 Homoserine dehydrogenase FIV04_13800 PF00696 Amino acid kinase family FIV04_13805 PF01053 Cys/Met metabolism PLP-dependent enzyme FIV04_13815 PF00390 Malic enzyme, N-terminal domain FIV04_13815 PF03949 Malic enzyme, NAD binding domain FIV04_13825 PF00270 DEAD/DEAH box helicase FIV04_13825 PF18319 PriA DNA helicase Cys-rich region (CRR) domain FIV04_13825 PF18074 Primosomal protein N C-terminal domain FIV04_13825 PF00271 Helicase conserved C-terminal domain FIV04_13825 PF17764 3′ DNA-binding domain (3′BD) FIV04_13830 PF00356 Bacterial regulatory proteins, lacI family FIV04_13850 PF01040 UbiA prenyltransferase family FIV04_13855 PF03737 Aldolase/RraA FIV04_13865 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded FIV04_13890 PF00121 Triosephosphate isomerase FIV04_13895 PF00365 Phosphofructokinase FIV04_13900 PF16916 Dimerisation domain of Zinc Transporter FIV04_13900 PF01545 Cation efflux family FIV04_13910 PF00486 Transcriptional regulatory protein, C terminal FIV04_13910 PF00072 Response regulator receiver domain FIV04_13915 PF16527 Two-component sensor protein CpxA, periplasmic domain FIV04_13915 PF00512 His Kinase A (phospho-acceptor) domain FIV04_13915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_13915 PF00672 HAMP domain FIV04_13920 PF02777 Iron/manganese superoxide dismutases, C-terminal domain FIV04_13920 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain FIV04_13925 PF00588 SpoU rRNA Methylase family FIV04_13930 PF04186 FxsA cytoplasmic membrane protein FIV04_13935 PF10415 Fumarase C C-terminus FIV04_13935 PF00206 Lyase FIV04_13940 PF03605 Anaerobic c4-dicarboxylate membrane transporter FIV04_13945 PF11412 Disulphide bond corrector protein DsbC FIV04_13945 PF02683 Cytochrome C biogenesis protein transmembrane region FIV04_13950 PF00196 Bacterial regulatory proteins, luxR family FIV04_13950 PF00072 Response regulator receiver domain FIV04_13955 PF01914 MarC family integral membrane protein FIV04_13965 PF00474 Sodium:solute symporter family FIV04_13975 PF00206 Lyase FIV04_13975 PF10415 Fumarase C C-terminus FIV04_13980 PF00512 His Kinase A (phospho-acceptor) domain FIV04_13980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_13980 PF01627 Hpt domain FIV04_13980 PF00072 Response regulator receiver domain FIV04_13980 PF00672 HAMP domain FIV04_13985 PF12832 MFS_1 like family FIV04_14005 PF13193 AMP-binding enzyme C-terminal domain FIV04_14005 PF16177 Acetyl-coenzyme A synthetase N-terminus FIV04_14005 PF00501 AMP-binding enzyme FIV04_14010 PF01220 Dehydroquinase class II FIV04_14015 PF00364 Biotin-requiring enzyme FIV04_14020 PF02785 Biotin carboxylase C-terminal domain FIV04_14020 PF00289 Biotin carboxylase, N-terminal domain FIV04_14020 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FIV04_14035 PF01207 Dihydrouridine synthase (Dus) FIV04_14045 PF09278 MerR, DNA binding FIV04_14045 PF00376 MerR family regulatory protein FIV04_14055 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain FIV04_14055 PF02843 Phosphoribosylglycinamide synthetase, C domain FIV04_14055 PF02844 Phosphoribosylglycinamide synthetase, N domain FIV04_14065 PF00216 Bacterial DNA-binding protein FIV04_14070 PF01595 Cyclin M transmembrane N-terminal domain FIV04_14070 PF00571 CBS domain FIV04_14075 PF04222 Protein of unknown function (DUF416) FIV04_14090 PF01208 Uroporphyrinogen decarboxylase (URO-D) FIV04_14100 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ FIV04_14105 PF04997 RNA polymerase Rpb1, domain 1 FIV04_14105 PF05000 RNA polymerase Rpb1, domain 4 FIV04_14105 PF04998 RNA polymerase Rpb1, domain 5 FIV04_14105 PF00623 RNA polymerase Rpb1, domain 2 FIV04_14105 PF04983 RNA polymerase Rpb1, domain 3 FIV04_14110 PF00562 RNA polymerase Rpb2, domain 6 FIV04_14110 PF04560 RNA polymerase Rpb2, domain 7 FIV04_14110 PF10385 RNA polymerase beta subunit external 1 domain FIV04_14110 PF04565 RNA polymerase Rpb2, domain 3 FIV04_14110 PF04563 RNA polymerase beta subunit FIV04_14110 PF04561 RNA polymerase Rpb2, domain 2 FIV04_14115 PF16320 Ribosomal protein L7/L12 dimerisation domain FIV04_14115 PF00542 Ribosomal protein L7/L12 C-terminal domain FIV04_14120 PF00466 Ribosomal protein L10 FIV04_14130 PF00298 Ribosomal protein L11, RNA binding domain FIV04_14130 PF03946 Ribosomal protein L11, N-terminal domain FIV04_14135 PF02357 Transcription termination factor nusG FIV04_14135 PF00467 KOW motif FIV04_14140 PF00584 SecE/Sec61-gamma subunits of protein translocation complex FIV04_14145 PF03144 Elongation factor Tu domain 2 FIV04_14145 PF00009 Elongation factor Tu GTP binding domain FIV04_14145 PF03143 Elongation factor Tu C-terminal domain FIV04_14170 PF00485 Phosphoribulokinase / Uridine kinase family FIV04_14175 PF08279 HTH domain FIV04_14175 PF02237 Biotin protein ligase C terminal domain FIV04_14175 PF03099 Biotin/lipoate A/B protein ligase family FIV04_14180 PF01565 FAD binding domain FIV04_14180 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain FIV04_14190 PF13091 PLD-like domain FIV04_14275 PF01177 Asp/Glu/Hydantoin racemase FIV04_14280 PF00764 Arginosuccinate synthase FIV04_14285 PF00593 TonB dependent receptor FIV04_14285 PF07715 TonB-dependent Receptor Plug Domain FIV04_14300 PF00440 Bacterial regulatory proteins, tetR family FIV04_14310 PF01554 MatE FIV04_14335 PF04345 Chorismate lyase FIV04_14340 PF03748 Flagellar basal body-associated protein FliL FIV04_14345 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease FIV04_14345 PF01694 Rhomboid family FIV04_14355 PF04545 Sigma-70, region 4 FIV04_14355 PF04542 Sigma-70 region 2 FIV04_14355 PF00140 Sigma-70 factor, region 1.2 FIV04_14360 PF18075 FtsX extracellular domain FIV04_14365 PF00005 ABC transporter FIV04_14370 PF00448 SRP54-type protein, GTPase domain FIV04_14370 PF02881 SRP54-type protein, helical bundle domain FIV04_14385 PF01914 MarC family integral membrane protein FIV04_14425 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FIV04_14425 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FIV04_14430 PF01022 Bacterial regulatory protein, arsR family FIV04_14435 PF08668 HDOD domain FIV04_14435 PF00563 EAL domain FIV04_14440 PF01810 LysE type translocator FIV04_14470 PF08495 FIST N domain FIV04_14470 PF00990 Diguanylate cyclase, GGDEF domain FIV04_14470 PF10442 FIST C domain FIV04_14470 PF00563 EAL domain FIV04_14475 PF00990 Diguanylate cyclase, GGDEF domain FIV04_14475 PF10442 FIST C domain FIV04_14475 PF00563 EAL domain FIV04_14475 PF08495 FIST N domain FIV04_14480 PF13419 Haloacid dehalogenase-like hydrolase FIV04_14500 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain FIV04_14500 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain FIV04_14510 PF01295 Adenylate cyclase, class-I FIV04_14510 PF12633 Adenylate cyclase NT domain FIV04_14520 PF02602 Uroporphyrinogen-III synthase HemD FIV04_14525 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase FIV04_14530 PF07219 HemY protein N-terminus FIV04_14585 PF00175 Oxidoreductase NAD-binding domain FIV04_14595 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase FIV04_14605 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FIV04_14605 PF07497 Rho termination factor, RNA-binding domain FIV04_14605 PF07498 Rho termination factor, N-terminal domain FIV04_14610 PF00085 Thioredoxin FIV04_14625 PF02592 Putative vitamin uptake transporter FIV04_14635 PF16124 RecQ zinc-binding FIV04_14635 PF00271 Helicase conserved C-terminal domain FIV04_14635 PF00270 DEAD/DEAH box helicase FIV04_14635 PF09382 RQC domain FIV04_14635 PF00570 HRDC domain FIV04_14640 PF00892 EamA-like transporter family FIV04_14645 PF02311 AraC-like ligand binding domain FIV04_14645 PF12833 Helix-turn-helix domain FIV04_14650 PF01810 LysE type translocator FIV04_14665 PF13361 UvrD-like helicase C-terminal domain FIV04_14665 PF00580 UvrD/REP helicase N-terminal domain FIV04_14675 PF05114 Protein of unknown function (DUF692) FIV04_14695 PF07690 Major Facilitator Superfamily FIV04_14700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_14700 PF03466 LysR substrate binding domain FIV04_14705 PF00557 Metallopeptidase family M24 FIV04_14705 PF01321 Creatinase/Prolidase N-terminal domain FIV04_14705 PF00557 Metallopeptidase family M24 FIV04_14705 PF01321 Creatinase/Prolidase N-terminal domain FIV04_14710 PF04055 Radical SAM superfamily FIV04_14710 PF06968 Biotin and Thiamin Synthesis associated domain FIV04_14715 PF05690 Thiazole biosynthesis protein ThiG FIV04_14725 PF00899 ThiF family FIV04_14730 PF02581 Thiamine monophosphate synthase FIV04_14735 PF01964 Radical SAM ThiC family FIV04_14735 PF13667 ThiC-associated domain FIV04_14745 PF02537 CrcB-like protein, Camphor Resistance (CrcB) FIV04_14750 PF00394 Multicopper oxidase FIV04_14750 PF07731 Multicopper oxidase FIV04_14750 PF10518 TAT (twin-arginine translocation) pathway signal sequence FIV04_14750 PF07732 Multicopper oxidase FIV04_14755 PF02743 Cache domain FIV04_14755 PF00672 HAMP domain FIV04_14755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_14805 PF00132 Bacterial transferase hexapeptide (six repeats) FIV04_14810 PF07369 Protein of unknown function (DUF1488) FIV04_14825 PF01300 Telomere recombination FIV04_14830 PF00731 AIR carboxylase FIV04_14835 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain FIV04_14835 PF02222 ATP-grasp domain FIV04_14840 PF01396 Topoisomerase DNA binding C4 zinc finger FIV04_14850 PF02481 DNA recombination-mediator protein A FIV04_14850 PF17782 DprA winged helix domain FIV04_14860 PF01327 Polypeptide deformylase FIV04_14865 PF00551 Formyl transferase FIV04_14865 PF02911 Formyl transferase, C-terminal domain FIV04_14870 PF01029 NusB family FIV04_14870 PF01189 16S rRNA methyltransferase RsmB/F FIV04_14875 PF02080 TrkA-C domain FIV04_14875 PF02254 TrkA-N domain FIV04_14880 PF02386 Cation transport protein FIV04_14890 PF03006 Haemolysin-III related FIV04_14895 PF07070 SpoOM protein FIV04_14905 PF06288 Protein of unknown function (DUF1040) FIV04_14910 PF13746 4Fe-4S dicluster domain FIV04_14910 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase FIV04_14910 PF12801 4Fe-4S binding domain FIV04_14915 PF01636 Phosphotransferase enzyme family FIV04_14920 PF01323 DSBA-like thioredoxin domain FIV04_14930 PF13335 Magnesium chelatase, subunit ChlI C-terminal FIV04_14930 PF01078 Magnesium chelatase, subunit ChlI FIV04_14970 PF13335 Magnesium chelatase, subunit ChlI C-terminal FIV04_14970 PF01078 Magnesium chelatase, subunit ChlI FIV04_14975 PF00205 Thiamine pyrophosphate enzyme, central domain FIV04_14975 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FIV04_14975 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FIV04_14985 PF01063 Amino-transferase class IV FIV04_14990 PF00920 Dehydratase family FIV04_14995 PF00585 C-terminal regulatory domain of Threonine dehydratase FIV04_14995 PF00291 Pyridoxal-phosphate dependent enzyme FIV04_15000 PF03466 LysR substrate binding domain FIV04_15000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_15005 PF07690 Major Facilitator Superfamily FIV04_15010 PF00990 Diguanylate cyclase, GGDEF domain FIV04_15015 PF00132 Bacterial transferase hexapeptide (six repeats) FIV04_15015 PF12804 MobA-like NTP transferase domain FIV04_15020 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain FIV04_15020 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain FIV04_15025 PF02874 ATP synthase alpha/beta family, beta-barrel domain FIV04_15025 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FIV04_15030 PF00231 ATP synthase FIV04_15035 PF00306 ATP synthase alpha/beta chain, C terminal domain FIV04_15035 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FIV04_15035 PF02874 ATP synthase alpha/beta family, beta-barrel domain FIV04_15045 PF00430 ATP synthase B/B' CF(0) FIV04_15050 PF00137 ATP synthase subunit C FIV04_15055 PF00119 ATP synthase A chain FIV04_15060 PF03899 ATP synthase I chain FIV04_15065 PF17762 HTH domain found in ParB protein FIV04_15065 PF02195 ParB-like nuclease domain FIV04_15070 PF13614 AAA domain FIV04_15085 PF00258 Flavodoxin FIV04_15090 PF10396 GTP-binding protein TrmE N-terminus FIV04_15090 PF12631 MnmE helical domain FIV04_15090 PF01926 50S ribosome-binding GTPase FIV04_15100 PF00825 Ribonuclease P FIV04_15110 PF00005 ABC transporter FIV04_15115 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_15120 PF00497 Bacterial extracellular solute-binding proteins, family 3 FIV04_15130 PF04773 FecR protein FIV04_15130 PF16220 Domain of unknown function (DUF4880) FIV04_15165 PF01618 MotA/TolQ/ExbB proton channel family FIV04_15170 PF02472 Biopolymer transport protein ExbD/TolR FIV04_15175 PF03544 Gram-negative bacterial TonB protein C-terminal FIV04_15180 PF09330 D-lactate dehydrogenase, membrane binding FIV04_15180 PF01565 FAD binding domain FIV04_15185 PF03466 LysR substrate binding domain FIV04_15185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_15220 PF02322 Cytochrome bd terminal oxidase subunit II FIV04_15225 PF01654 Cytochrome bd terminal oxidase subunit I FIV04_15230 PF00392 Bacterial regulatory proteins, gntR family FIV04_15230 PF00155 Aminotransferase class I and II FIV04_15235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_15235 PF00672 HAMP domain FIV04_15255 PF05762 VWA domain containing CoxE-like protein FIV04_15260 PF07728 AAA domain (dynein-related subfamily) FIV04_15260 PF12592 Protein of unknown function (DUF3763) FIV04_15260 PF17868 AAA lid domain FIV04_15265 PF00293 NUDIX domain FIV04_15270 PF01212 Beta-eliminating lyase FIV04_15275 PF01926 50S ribosome-binding GTPase FIV04_15280 PF00990 Diguanylate cyclase, GGDEF domain FIV04_15285 PF00583 Acetyltransferase (GNAT) family FIV04_15285 PF00814 Glycoprotease family FIV04_15305 PF01238 Phosphomannose isomerase type I FIV04_15310 PF02595 Glycerate kinase family FIV04_15315 PF09261 Alpha mannosidase middle domain FIV04_15315 PF01074 Glycosyl hydrolases family 38 N-terminal domain FIV04_15315 PF07748 Glycosyl hydrolases family 38 C-terminal domain FIV04_15320 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FIV04_15320 PF02378 Phosphotransferase system, EIIC FIV04_15320 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FIV04_15325 PF00392 Bacterial regulatory proteins, gntR family FIV04_15325 PF07702 UTRA domain FIV04_15335 PF00672 HAMP domain FIV04_15335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_15335 PF12729 Four helix bundle sensory module for signal transduction FIV04_15340 PF00873 AcrB/AcrD/AcrF family FIV04_15345 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FIV04_15350 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) FIV04_15355 PF12262 Bacterial virulence factor lipase N-terminal FIV04_15360 PF00486 Transcriptional regulatory protein, C terminal FIV04_15360 PF00072 Response regulator receiver domain FIV04_15370 PF03606 C4-dicarboxylate anaerobic carrier FIV04_15375 PF00072 Response regulator receiver domain FIV04_15375 PF00196 Bacterial regulatory proteins, luxR family FIV04_15380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_15380 PF07730 Histidine kinase FIV04_15380 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term FIV04_15380 PF00672 HAMP domain FIV04_15395 PF00384 Molybdopterin oxidoreductase FIV04_15395 PF01568 Molydopterin dinucleotide binding domain FIV04_15395 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FIV04_15400 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) FIV04_15405 PF03264 NapC/NirT cytochrome c family, N-terminal region FIV04_15415 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus FIV04_15415 PF00561 alpha/beta hydrolase fold FIV04_15425 PF02803 Thiolase, C-terminal domain FIV04_15425 PF00108 Thiolase, N-terminal domain FIV04_15430 PF00106 short chain dehydrogenase FIV04_15450 PF01037 Lrp/AsnC ligand binding domain FIV04_15465 PF00512 His Kinase A (phospho-acceptor) domain FIV04_15465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_15465 PF00989 PAS fold FIV04_15465 PF16736 Single Cache-like FIV04_15470 PF00486 Transcriptional regulatory protein, C terminal FIV04_15470 PF00072 Response regulator receiver domain FIV04_15495 PF01810 LysE type translocator FIV04_15500 PF00271 Helicase conserved C-terminal domain FIV04_15500 PF00270 DEAD/DEAH box helicase FIV04_15505 PF07683 Cobalamin synthesis protein cobW C-terminal domain FIV04_15505 PF02492 CobW/HypB/UreG, nucleotide-binding domain FIV04_15510 PF00654 Voltage gated chloride channel FIV04_15520 PF00990 Diguanylate cyclase, GGDEF domain FIV04_15520 PF00563 EAL domain FIV04_15520 PF13426 PAS domain FIV04_15525 PF00042 Globin FIV04_15525 PF00175 Oxidoreductase NAD-binding domain FIV04_15525 PF00970 Oxidoreductase FAD-binding domain FIV04_15535 PF01590 GAF domain FIV04_15535 PF00158 Sigma-54 interaction domain FIV04_15545 PF13488 Glycine zipper FIV04_15545 PF00691 OmpA family FIV04_15555 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FIV04_15555 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FIV04_15560 PF16925 Tetracyclin repressor-like, C-terminal domain FIV04_15560 PF00440 Bacterial regulatory proteins, tetR family FIV04_15565 PF00107 Zinc-binding dehydrogenase FIV04_15565 PF16884 N-terminal domain of oxidoreductase FIV04_15575 PF00849 RNA pseudouridylate synthase FIV04_15580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_15580 PF03466 LysR substrate binding domain FIV04_15585 PF00768 D-alanyl-D-alanine carboxypeptidase FIV04_15585 PF07943 Penicillin-binding protein 5, C-terminal domain FIV04_15600 PF07694 5TMR of 5TMR-LYT FIV04_15600 PF00990 Diguanylate cyclase, GGDEF domain FIV04_15605 PF00704 Glycosyl hydrolases family 18 FIV04_15605 PF06483 Chitinase C FIV04_15610 PF02028 BCCT, betaine/carnitine/choline family transporter FIV04_15630 PF01212 Beta-eliminating lyase FIV04_15650 PF06719 AraC-type transcriptional regulator N-terminus FIV04_15650 PF12833 Helix-turn-helix domain FIV04_15655 PF00465 Iron-containing alcohol dehydrogenase FIV04_15660 PF00005 ABC transporter FIV04_15665 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_15675 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_15680 PF07715 TonB-dependent Receptor Plug Domain FIV04_15680 PF00593 TonB dependent receptor FIV04_15685 PF12833 Helix-turn-helix domain FIV04_15685 PF02311 AraC-like ligand binding domain FIV04_15690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_15690 PF03466 LysR substrate binding domain FIV04_15695 PF01810 LysE type translocator FIV04_15780 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FIV04_15800 PF00378 Enoyl-CoA hydratase/isomerase FIV04_15805 PF01032 FecCD transport family FIV04_15815 PF07715 TonB-dependent Receptor Plug Domain FIV04_15815 PF00593 TonB dependent receptor FIV04_15820 PF12833 Helix-turn-helix domain FIV04_15830 PF00005 ABC transporter FIV04_15835 PF07690 Major Facilitator Superfamily FIV04_15840 PF07995 Glucose / Sorbosone dehydrogenase FIV04_15845 PF00313 'Cold-shock' DNA-binding domain FIV04_15850 PF07152 YaeQ protein FIV04_15865 PF01227 GTP cyclohydrolase I FIV04_15870 PF03453 MoeA N-terminal region (domain I and II) FIV04_15870 PF03454 MoeA C-terminal region (domain IV) FIV04_15870 PF00994 Probable molybdopterin binding domain FIV04_15875 PF00899 ThiF family FIV04_15895 PF00581 Rhodanese-like domain FIV04_15900 PF00990 Diguanylate cyclase, GGDEF domain FIV04_15900 PF03707 Bacterial signalling protein N terminal repeat FIV04_15900 PF00563 EAL domain FIV04_15910 PF00923 Transaldolase/Fructose-6-phosphate aldolase FIV04_15915 PF02779 Transketolase, pyrimidine binding domain FIV04_15915 PF02780 Transketolase, C-terminal domain FIV04_15915 PF00456 Transketolase, thiamine diphosphate binding domain FIV04_15920 PF01037 Lrp/AsnC ligand binding domain FIV04_15930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_15930 PF08447 PAS fold FIV04_15935 PF03279 Bacterial lipid A biosynthesis acyltransferase FIV04_15940 PF07690 Major Facilitator Superfamily FIV04_15945 PF03466 LysR substrate binding domain FIV04_15945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_15950 PF00072 Response regulator receiver domain FIV04_15950 PF00512 His Kinase A (phospho-acceptor) domain FIV04_15950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_15950 PF09308 LuxQ, periplasmic FIV04_15955 PF00072 Response regulator receiver domain FIV04_15960 PF00474 Sodium:solute symporter family FIV04_15975 PF00392 Bacterial regulatory proteins, gntR family FIV04_15975 PF07729 FCD domain FIV04_15980 PF00392 Bacterial regulatory proteins, gntR family FIV04_15980 PF07729 FCD domain FIV04_15995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_15995 PF03466 LysR substrate binding domain FIV04_16005 PF00005 ABC transporter FIV04_16010 PF01032 FecCD transport family FIV04_16015 PF01032 FecCD transport family FIV04_16020 PF01497 Periplasmic binding protein FIV04_16025 PF01557 Fumarylacetoacetate (FAA) hydrolase family FIV04_16035 PF07940 Heparinase II/III-like protein FIV04_16035 PF05426 Alginate lyase FIV04_16040 PF07940 Heparinase II/III-like protein FIV04_16040 PF05426 Alginate lyase FIV04_16045 PF07883 Cupin domain FIV04_16050 PF00294 pfkB family carbohydrate kinase FIV04_16055 PF01081 KDPG and KHG aldolase FIV04_16085 PF01594 AI-2E family transporter FIV04_16095 PF13533 Biotin-lipoyl like FIV04_16115 PF12833 Helix-turn-helix domain FIV04_16115 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term FIV04_16125 PF00873 AcrB/AcrD/AcrF family FIV04_16150 PF02581 Thiamine monophosphate synthase FIV04_16155 PF02743 Cache domain FIV04_16155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_16155 PF00672 HAMP domain FIV04_16160 PF02110 Hydroxyethylthiazole kinase family FIV04_16165 PF03070 TENA/THI-4/PQQC family FIV04_16170 PF09084 NMT1/THI5 like FIV04_16175 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_16180 PF00005 ABC transporter FIV04_16185 PF08543 Phosphomethylpyrimidine kinase FIV04_16200 PF03471 Transporter associated domain FIV04_16200 PF03741 Integral membrane protein TerC family FIV04_16215 PF18500 CadC C-terminal domain 1 FIV04_16215 PF00486 Transcriptional regulatory protein, C terminal FIV04_16235 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FIV04_16245 PF08241 Methyltransferase domain FIV04_16250 PF12729 Four helix bundle sensory module for signal transduction FIV04_16250 PF00672 HAMP domain FIV04_16250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_16255 PF03466 LysR substrate binding domain FIV04_16255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_16270 PF12801 4Fe-4S binding domain FIV04_16270 PF12837 4Fe-4S binding domain FIV04_16275 PF12838 4Fe-4S dicluster domain FIV04_16275 PF12800 4Fe-4S binding domain FIV04_16295 PF07969 Amidohydrolase family FIV04_16325 PF00072 Response regulator receiver domain FIV04_16325 PF00486 Transcriptional regulatory protein, C terminal FIV04_16330 PF00672 HAMP domain FIV04_16330 PF00512 His Kinase A (phospho-acceptor) domain FIV04_16330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_16350 PF00672 HAMP domain FIV04_16350 PF12729 Four helix bundle sensory module for signal transduction FIV04_16350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_16360 PF00563 EAL domain FIV04_16360 PF03707 Bacterial signalling protein N terminal repeat FIV04_16360 PF00990 Diguanylate cyclase, GGDEF domain FIV04_16380 PF01965 DJ-1/PfpI family FIV04_16385 PF13737 Transposase DDE domain FIV04_16390 PF00478 IMP dehydrogenase / GMP reductase domain FIV04_16420 PF01554 MatE FIV04_16425 PF03466 LysR substrate binding domain FIV04_16425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_16430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_16435 PF08447 PAS fold FIV04_16435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_16440 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FIV04_16455 PF00069 Protein kinase domain FIV04_16490 PF10431 C-terminal, D2-small domain, of ClpB protein FIV04_16490 PF17871 AAA lid domain FIV04_16490 PF07724 AAA domain (Cdc48 subfamily) FIV04_16490 PF00004 ATPase family associated with various cellular activities (AAA) FIV04_16550 PF04717 Type VI secretion system, phage-baseplate injector FIV04_16550 PF16671 Actin cross-linking domain FIV04_16560 PF07690 Major Facilitator Superfamily FIV04_16570 PF11849 Domain of unknown function (DUF3369) FIV04_16575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_16575 PF00072 Response regulator receiver domain FIV04_16575 PF13426 PAS domain FIV04_16595 PF03594 Benzoate membrane transport protein FIV04_16600 PF01381 Helix-turn-helix FIV04_16600 PF07883 Cupin domain FIV04_16605 PF01734 Patatin-like phospholipase FIV04_16610 PF04231 Endonuclease I FIV04_16635 PF00132 Bacterial transferase hexapeptide (six repeats) FIV04_16655 PF08448 PAS fold FIV04_16655 PF00990 Diguanylate cyclase, GGDEF domain FIV04_16660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_16660 PF00672 HAMP domain FIV04_16660 PF02743 Cache domain FIV04_16665 PF03707 Bacterial signalling protein N terminal repeat FIV04_16665 PF00990 Diguanylate cyclase, GGDEF domain FIV04_16665 PF00563 EAL domain FIV04_16670 PF00871 Acetokinase family FIV04_16675 PF03707 Bacterial signalling protein N terminal repeat FIV04_16675 PF00990 Diguanylate cyclase, GGDEF domain FIV04_16675 PF00563 EAL domain FIV04_16680 PF00271 Helicase conserved C-terminal domain FIV04_16680 PF00270 DEAD/DEAH box helicase FIV04_16680 PF03880 DbpA RNA binding domain FIV04_16690 PF12833 Helix-turn-helix domain FIV04_16700 PF12849 PBP superfamily domain FIV04_16710 PF00873 AcrB/AcrD/AcrF family FIV04_16715 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FIV04_16720 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FIV04_16745 PF00248 Aldo/keto reductase family FIV04_16750 PF08032 RNA 2'-O ribose methyltransferase substrate binding FIV04_16750 PF00588 SpoU rRNA Methylase family FIV04_16755 PF00037 4Fe-4S binding domain FIV04_16755 PF11953 Domain of unknown function (DUF3470) FIV04_16765 PF00881 Nitroreductase family FIV04_16770 PF00270 DEAD/DEAH box helicase FIV04_16770 PF00271 Helicase conserved C-terminal domain FIV04_16775 PF03479 Plants and Prokaryotes Conserved (PCC) domain FIV04_16775 PF12804 MobA-like NTP transferase domain FIV04_16775 PF00132 Bacterial transferase hexapeptide (six repeats) FIV04_16780 PF02811 PHP domain FIV04_16780 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FIV04_16780 PF07733 Bacterial DNA polymerase III alpha NTPase domain FIV04_16780 PF11490 DNA polymerase III polC-type N-terminus II FIV04_16780 PF00929 Exonuclease FIV04_16780 PF14579 Helix-hairpin-helix motif FIV04_16795 PF00271 Helicase conserved C-terminal domain FIV04_16795 PF00270 DEAD/DEAH box helicase FIV04_16795 PF03880 DbpA RNA binding domain FIV04_16800 PF00114 Pilin (bacterial filament) FIV04_16800 PF07963 Prokaryotic N-terminal methylation motif FIV04_16805 PF00248 Aldo/keto reductase family FIV04_16835 PF00072 Response regulator receiver domain FIV04_16835 PF00196 Bacterial regulatory proteins, luxR family FIV04_16845 PF05552 Conserved TM helix FIV04_16845 PF00924 Mechanosensitive ion channel FIV04_16855 PF02683 Cytochrome C biogenesis protein transmembrane region FIV04_16855 PF11412 Disulphide bond corrector protein DsbC FIV04_16860 PF00085 Thioredoxin FIV04_16875 PF13609 Gram-negative porin FIV04_16880 PF00892 EamA-like transporter family FIV04_16885 PF00462 Glutaredoxin FIV04_16895 PF07690 Major Facilitator Superfamily FIV04_16900 PF03466 LysR substrate binding domain FIV04_16900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_16905 PF08447 PAS fold FIV04_16905 PF00563 EAL domain FIV04_16905 PF00990 Diguanylate cyclase, GGDEF domain FIV04_16905 PF08448 PAS fold FIV04_16910 PF08525 Opacity-associated protein A N-terminal motif FIV04_16910 PF01551 Peptidase family M23 FIV04_16910 PF01476 LysM domain FIV04_16940 PF02743 Cache domain FIV04_16940 PF00672 HAMP domain FIV04_16940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_16945 PF00128 Alpha amylase, catalytic domain FIV04_16955 PF00512 His Kinase A (phospho-acceptor) domain FIV04_16955 PF09456 RcsC Alpha-Beta-Loop (ABL) FIV04_16955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_16955 PF00072 Response regulator receiver domain FIV04_16960 PF01923 Cobalamin adenosyltransferase FIV04_16970 PF01243 Pyridoxamine 5'-phosphate oxidase FIV04_16975 PF06228 Haem utilisation ChuX/HutX FIV04_16980 PF04055 Radical SAM superfamily FIV04_16985 PF03544 Gram-negative bacterial TonB protein C-terminal FIV04_16990 PF01618 MotA/TolQ/ExbB proton channel family FIV04_16995 PF02472 Biopolymer transport protein ExbD/TolR FIV04_17005 PF01032 FecCD transport family FIV04_17010 PF00005 ABC transporter FIV04_17060 PF00111 2Fe-2S iron-sulfur cluster binding domain FIV04_17060 PF03476 MOSC N-terminal beta barrel domain FIV04_17060 PF03473 MOSC domain FIV04_17070 PF01679 Proteolipid membrane potential modulator FIV04_17080 PF17151 Periplasmic sensor domain FIV04_17080 PF00990 Diguanylate cyclase, GGDEF domain FIV04_17095 PF01274 Malate synthase FIV04_17100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_17100 PF03466 LysR substrate binding domain FIV04_17105 PF00463 Isocitrate lyase family FIV04_17115 PF01523 Putative modulator of DNA gyrase FIV04_17120 PF01523 Putative modulator of DNA gyrase FIV04_17145 PF00005 ABC transporter FIV04_17170 PF07690 Major Facilitator Superfamily FIV04_17175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_17175 PF03466 LysR substrate binding domain FIV04_17180 PF00155 Aminotransferase class I and II FIV04_17210 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_17215 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_17215 PF14785 Maltose transport system permease protein MalF P2 domain FIV04_17220 PF01547 Bacterial extracellular solute-binding protein FIV04_17225 PF00005 ABC transporter FIV04_17225 PF08402 TOBE domain FIV04_17235 PF02743 Cache domain FIV04_17235 PF00672 HAMP domain FIV04_17235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_17240 PF17863 AAA lid domain FIV04_17240 PF07726 ATPase family associated with various cellular activities (AAA) FIV04_17245 PF01882 Protein of unknown function DUF58 FIV04_17260 PF07584 Aerotolerance regulator N-terminal FIV04_17260 PF13519 von Willebrand factor type A domain FIV04_17270 PF00990 Diguanylate cyclase, GGDEF domain FIV04_17270 PF17158 Membrane-associated sensor, integral membrane domain FIV04_17275 PF00005 ABC transporter FIV04_17280 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_17285 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_17290 PF12849 PBP superfamily domain FIV04_17295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_17295 PF02743 Cache domain FIV04_17295 PF00672 HAMP domain FIV04_17315 PF00593 TonB dependent receptor FIV04_17315 PF07715 TonB-dependent Receptor Plug Domain FIV04_17320 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain FIV04_17320 PF00326 Prolyl oligopeptidase family FIV04_17325 PF03280 Proteobacterial lipase chaperone protein FIV04_17330 PF00561 alpha/beta hydrolase fold FIV04_17335 PF00657 GDSL-like Lipase/Acylhydrolase FIV04_17340 PF00270 DEAD/DEAH box helicase FIV04_17340 PF00271 Helicase conserved C-terminal domain FIV04_17350 PF17969 L,D-transpeptidase C-terminal domain FIV04_17350 PF01476 LysM domain FIV04_17350 PF03734 L,D-transpeptidase catalytic domain FIV04_17355 PF01048 Phosphorylase superfamily FIV04_17370 PF00990 Diguanylate cyclase, GGDEF domain FIV04_17380 PF11742 Protein of unknown function (DUF3302) FIV04_17385 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FIV04_17385 PF00529 HlyD membrane-fusion protein of T1SS FIV04_17395 PF00005 ABC transporter FIV04_17395 PF12558 ATP-binding cassette cobalt transporter FIV04_17410 PF02806 Alpha amylase, C-terminal all-beta domain FIV04_17410 PF00128 Alpha amylase, catalytic domain FIV04_17410 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) FIV04_17415 PF02446 4-alpha-glucanotransferase FIV04_17420 PF00343 Carbohydrate phosphorylase FIV04_17425 PF17874 MalT-like TPR region FIV04_17425 PF00196 Bacterial regulatory proteins, luxR family FIV04_17445 PF02630 SCO1/SenC FIV04_17455 PF03193 RsgA GTPase FIV04_17460 PF00375 Sodium:dicarboxylate symporter family FIV04_17470 PF03466 LysR substrate binding domain FIV04_17470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_17475 PF01037 Lrp/AsnC ligand binding domain FIV04_17480 PF01810 LysE type translocator FIV04_17495 PF17967 Pullulanase N2 domain FIV04_17495 PF18494 Pullulanase Ins domain FIV04_17495 PF03714 Bacterial pullanase-associated domain FIV04_17495 PF11852 Domain of unknown function (DUF3372) FIV04_17495 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) FIV04_17505 PF16657 Maltogenic Amylase, C-terminal domain FIV04_17505 PF00128 Alpha amylase, catalytic domain FIV04_17515 PF01547 Bacterial extracellular solute-binding protein FIV04_17540 PF00128 Alpha amylase, catalytic domain FIV04_17540 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) FIV04_17550 PF04816 tRNA (adenine(22)-N(1))-methyltransferase FIV04_17555 PF01553 Acyltransferase FIV04_17560 PF12833 Helix-turn-helix domain FIV04_17560 PF01965 DJ-1/PfpI family FIV04_17575 PF00970 Oxidoreductase FAD-binding domain FIV04_17575 PF00175 Oxidoreductase NAD-binding domain FIV04_17580 PF09313 Domain of unknown function (DUF1971) FIV04_17585 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FIV04_17585 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FIV04_17590 PF01734 Patatin-like phospholipase FIV04_17595 PF02595 Glycerate kinase family FIV04_17605 PF01261 Xylose isomerase-like TIM barrel FIV04_17610 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family FIV04_17620 PF00596 Class II Aldolase and Adducin N-terminal domain FIV04_17625 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FIV04_17630 PF03611 PTS system sugar-specific permease component FIV04_17635 PF00455 DeoR C terminal sensor domain FIV04_17635 PF08220 DeoR-like helix-turn-helix domain FIV04_17660 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FIV04_17660 PF02894 Oxidoreductase family, C-terminal alpha/beta domain FIV04_17670 PF03466 LysR substrate binding domain FIV04_17670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_17685 PF00376 MerR family regulatory protein FIV04_17685 PF09278 MerR, DNA binding FIV04_17715 PF01758 Sodium Bile acid symporter family FIV04_17720 PF03466 LysR substrate binding domain FIV04_17720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_17730 PF00230 Major intrinsic protein FIV04_17740 PF08220 DeoR-like helix-turn-helix domain FIV04_17740 PF00455 DeoR C terminal sensor domain FIV04_17745 PF16901 C-terminal domain of alpha-glycerophosphate oxidase FIV04_17745 PF01266 FAD dependent oxidoreductase FIV04_17750 PF00106 short chain dehydrogenase FIV04_17755 PF03466 LysR substrate binding domain FIV04_17755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_17770 PF00106 short chain dehydrogenase FIV04_17790 PF00005 ABC transporter FIV04_17795 PF01497 Periplasmic binding protein FIV04_17800 PF01032 FecCD transport family FIV04_17810 PF07715 TonB-dependent Receptor Plug Domain FIV04_17810 PF00593 TonB dependent receptor FIV04_17815 PF13091 PLD-like domain FIV04_17820 PF16326 ABC transporter C-terminal domain FIV04_17820 PF12848 ABC transporter FIV04_17820 PF00005 ABC transporter FIV04_17825 PF00248 Aldo/keto reductase family FIV04_17835 PF02311 AraC-like ligand binding domain FIV04_17835 PF12833 Helix-turn-helix domain FIV04_17845 PF01872 RibD C-terminal domain FIV04_17865 PF00480 ROK family FIV04_17870 PF00128 Alpha amylase, catalytic domain FIV04_17870 PF02903 Alpha amylase, N-terminal ig-like domain FIV04_17870 PF16657 Maltogenic Amylase, C-terminal domain FIV04_17875 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_17880 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_17885 PF13416 Bacterial extracellular solute-binding protein FIV04_17895 PF00132 Bacterial transferase hexapeptide (six repeats) FIV04_17895 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD FIV04_17910 PF03459 TOBE domain FIV04_17910 PF17912 MalK OB fold domain FIV04_17910 PF00005 ABC transporter FIV04_17915 PF00128 Alpha amylase, catalytic domain FIV04_17915 PF00686 Starch binding domain FIV04_17920 PF03466 LysR substrate binding domain FIV04_17920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_17925 PF07690 Major Facilitator Superfamily FIV04_17930 PF14602 Hexapeptide repeat of succinyl-transferase FIV04_17930 PF12464 Maltose acetyltransferase FIV04_17935 PF00107 Zinc-binding dehydrogenase FIV04_17935 PF08240 Alcohol dehydrogenase GroES-like domain FIV04_17940 PF00356 Bacterial regulatory proteins, lacI family FIV04_17945 PF00232 Glycosyl hydrolase family 1 FIV04_17965 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FIV04_17980 PF00106 short chain dehydrogenase FIV04_17985 PF02574 Homocysteine S-methyltransferase FIV04_17985 PF02219 Methylenetetrahydrofolate reductase FIV04_17990 PF01475 Ferric uptake regulator family FIV04_18005 PF00109 Beta-ketoacyl synthase, N-terminal domain FIV04_18005 PF16197 Ketoacyl-synthetase C-terminal extension FIV04_18005 PF00107 Zinc-binding dehydrogenase FIV04_18005 PF00550 Phosphopantetheine attachment site FIV04_18005 PF08659 KR domain FIV04_18005 PF14765 Polyketide synthase dehydratase FIV04_18005 PF02801 Beta-ketoacyl synthase, C-terminal domain FIV04_18005 PF00698 Acyl transferase domain FIV04_18005 PF08240 Alcohol dehydrogenase GroES-like domain FIV04_18015 PF07690 Major Facilitator Superfamily FIV04_18020 PF12833 Helix-turn-helix domain FIV04_18020 PF02311 AraC-like ligand binding domain FIV04_18030 PF03466 LysR substrate binding domain FIV04_18030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_18045 PF00114 Pilin (bacterial filament) FIV04_18045 PF07963 Prokaryotic N-terminal methylation motif FIV04_18055 PF00255 Glutathione peroxidase FIV04_18060 PF00392 Bacterial regulatory proteins, gntR family FIV04_18060 PF07702 UTRA domain FIV04_18070 PF13378 Enolase C-terminal domain-like FIV04_18070 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FIV04_18075 PF02378 Phosphotransferase system, EIIC FIV04_18075 PF00367 phosphotransferase system, EIIB FIV04_18080 PF00294 pfkB family carbohydrate kinase FIV04_18085 PF01081 KDPG and KHG aldolase FIV04_18090 PF03109 ABC1 family FIV04_18095 PF00563 EAL domain FIV04_18095 PF03707 Bacterial signalling protein N terminal repeat FIV04_18095 PF00990 Diguanylate cyclase, GGDEF domain FIV04_18100 PF01047 MarR family FIV04_18105 PF00664 ABC transporter transmembrane region FIV04_18105 PF00005 ABC transporter FIV04_18110 PF00664 ABC transporter transmembrane region FIV04_18110 PF00005 ABC transporter FIV04_18115 PF07715 TonB-dependent Receptor Plug Domain FIV04_18115 PF00593 TonB dependent receptor FIV04_18125 PF12833 Helix-turn-helix domain FIV04_18130 PF00005 ABC transporter FIV04_18130 PF00571 CBS domain FIV04_18135 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_18140 PF04069 Substrate binding domain of ABC-type glycine betaine transport system FIV04_18145 PF05199 GMC oxidoreductase FIV04_18145 PF00732 GMC oxidoreductase FIV04_18175 PF08402 TOBE domain FIV04_18175 PF00005 ABC transporter FIV04_18195 PF01547 Bacterial extracellular solute-binding protein FIV04_18200 PF00392 Bacterial regulatory proteins, gntR family FIV04_18200 PF07702 UTRA domain FIV04_18220 PF00202 Aminotransferase class-III FIV04_18225 PF00171 Aldehyde dehydrogenase family FIV04_18230 PF04371 Porphyromonas-type peptidyl-arginine deiminase FIV04_18235 PF00795 Carbon-nitrogen hydrolase FIV04_18240 PF01266 FAD dependent oxidoreductase FIV04_18245 PF00171 Aldehyde dehydrogenase family FIV04_18250 PF01381 Helix-turn-helix FIV04_18250 PF07883 Cupin domain FIV04_18255 PF07722 Peptidase C26 FIV04_18265 PF00120 Glutamine synthetase, catalytic domain FIV04_18270 PF03553 Na+/H+ antiporter family FIV04_18285 PF03466 LysR substrate binding domain FIV04_18285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_18300 PF00664 ABC transporter transmembrane region FIV04_18300 PF00005 ABC transporter FIV04_18320 PF01037 Lrp/AsnC ligand binding domain FIV04_18335 PF00474 Sodium:solute symporter family FIV04_18345 PF00171 Aldehyde dehydrogenase family FIV04_18345 PF01619 Proline dehydrogenase FIV04_18345 PF14850 DNA-binding domain of Proline dehydrogenase FIV04_18345 PF18327 Proline utilization A proline dehydrogenase N-terminal domain FIV04_18350 PF12833 Helix-turn-helix domain FIV04_18375 PF02743 Cache domain FIV04_18375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_18375 PF00512 His Kinase A (phospho-acceptor) domain FIV04_18380 PF02954 Bacterial regulatory protein, Fis family FIV04_18380 PF00072 Response regulator receiver domain FIV04_18380 PF00158 Sigma-54 interaction domain FIV04_18385 PF00529 HlyD membrane-fusion protein of T1SS FIV04_18400 PF00664 ABC transporter transmembrane region FIV04_18400 PF03412 Peptidase C39 family FIV04_18400 PF00005 ABC transporter FIV04_18410 PF05127 Helicase FIV04_18410 PF13718 GNAT acetyltransferase 2 FIV04_18415 PF08775 ParB family FIV04_18415 PF02195 ParB-like nuclease domain FIV04_18420 PF18607 ParA helix turn helix domain FIV04_18420 PF13614 AAA domain FIV04_18445 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FIV04_18445 PF00005 ABC transporter FIV04_18450 PF00005 ABC transporter FIV04_18450 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FIV04_18460 PF00925 GTP cyclohydrolase II FIV04_18460 PF08719 Domain of unknown function (DUF1768) FIV04_18470 PF00072 Response regulator receiver domain FIV04_18470 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FIV04_18470 PF00672 HAMP domain FIV04_18470 PF01627 Hpt domain FIV04_18470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_18470 PF00512 His Kinase A (phospho-acceptor) domain FIV04_18475 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FIV04_18480 PF04209 homogentisate 1,2-dioxygenase FIV04_18490 PF02798 Glutathione S-transferase, N-terminal domain FIV04_18490 PF14497 Glutathione S-transferase, C-terminal domain FIV04_18495 PF00501 AMP-binding enzyme FIV04_18495 PF13193 AMP-binding enzyme C-terminal domain FIV04_18500 PF00351 Biopterin-dependent aromatic amino acid hydroxylase FIV04_18505 PF01329 Pterin 4 alpha carbinolamine dehydratase FIV04_18515 PF01709 Transcriptional regulator FIV04_18530 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FIV04_18530 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FIV04_18535 PF00102 Protein-tyrosine phosphatase FIV04_18535 PF09013 YopH, N-terminal FIV04_18555 PF12704 MacB-like periplasmic core domain FIV04_18555 PF02687 FtsX-like permease family FIV04_18555 PF00005 ABC transporter FIV04_18575 PF07694 5TMR of 5TMR-LYT FIV04_18575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_18575 PF06580 Histidine kinase FIV04_18580 PF04397 LytTr DNA-binding domain FIV04_18580 PF00072 Response regulator receiver domain FIV04_18585 PF00675 Insulinase (Peptidase family M16) FIV04_18585 PF05193 Peptidase M16 inactive domain FIV04_18595 PF02355 Protein export membrane protein FIV04_18595 PF07549 SecD/SecF GG Motif FIV04_18595 PF13721 SecD export protein N-terminal TM region FIV04_18600 PF07549 SecD/SecF GG Motif FIV04_18600 PF02355 Protein export membrane protein FIV04_18610 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FIV04_18615 PF03466 LysR substrate binding domain FIV04_18615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_18635 PF01220 Dehydroquinase class II FIV04_18640 PF08501 Shikimate dehydrogenase substrate binding domain FIV04_18640 PF18317 Shikimate 5'-dehydrogenase C-terminal domain FIV04_18645 PF03737 Aldolase/RraA FIV04_18650 PF04303 PrpF protein FIV04_18655 PF04909 Amidohydrolase FIV04_18660 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit FIV04_18665 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase FIV04_18670 PF01161 Phosphatidylethanolamine-binding protein FIV04_18675 PF12833 Helix-turn-helix domain FIV04_18680 PF02585 GlcNAc-PI de-N-acetylase FIV04_18685 PF00248 Aldo/keto reductase family FIV04_18690 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FIV04_18700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_18700 PF03466 LysR substrate binding domain FIV04_18705 PF03480 Bacterial extracellular solute-binding protein, family 7 FIV04_18715 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FIV04_18720 PF03547 Membrane transport protein FIV04_18730 PF01261 Xylose isomerase-like TIM barrel FIV04_18735 PF13192 Thioredoxin domain FIV04_18735 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIV04_18740 PF00578 AhpC/TSA family FIV04_18740 PF10417 C-terminal domain of 1-Cys peroxiredoxin FIV04_18770 PF01593 Flavin containing amine oxidoreductase FIV04_18775 PF00106 short chain dehydrogenase FIV04_18785 PF00875 DNA photolyase FIV04_18785 PF03441 FAD binding domain of DNA photolyase FIV04_18795 PF12973 ChrR Cupin-like domain FIV04_18800 PF04545 Sigma-70, region 4 FIV04_18800 PF04542 Sigma-70 region 2 FIV04_18810 PF14552 Tautomerase enzyme FIV04_18820 PF10928 Protein of unknown function (DUF2810) FIV04_18825 PF03616 Sodium/glutamate symporter FIV04_18830 PF18113 Rubredoxin binding C-terminal domain FIV04_18830 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIV04_18835 PF00258 Flavodoxin FIV04_18835 PF00753 Metallo-beta-lactamase superfamily FIV04_18835 PF00301 Rubredoxin FIV04_18840 PF00881 Nitroreductase family FIV04_18850 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FIV04_18850 PF02378 Phosphotransferase system, EIIC FIV04_18850 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FIV04_18855 PF01232 Mannitol dehydrogenase Rossmann domain FIV04_18855 PF08125 Mannitol dehydrogenase C-terminal domain FIV04_18860 PF05068 Mannitol repressor FIV04_18875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_18875 PF03466 LysR substrate binding domain FIV04_18885 PF00730 HhH-GPD superfamily base excision DNA repair protein FIV04_18885 PF06029 AlkA N-terminal domain FIV04_18890 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain FIV04_18890 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FIV04_18900 PF03600 Citrate transporter FIV04_18910 PF07670 Nucleoside recognition FIV04_18915 PF07670 Nucleoside recognition FIV04_18925 PF01124 MAPEG family FIV04_18945 PF01569 PAP2 superfamily FIV04_18955 PF12833 Helix-turn-helix domain FIV04_18955 PF12852 Cupin FIV04_18980 PF12697 Alpha/beta hydrolase family FIV04_18985 PF00704 Glycosyl hydrolases family 18 FIV04_18985 PF08329 Chitinase A, N-terminal domain FIV04_19000 PF05726 Pirin C-terminal cupin domain FIV04_19000 PF02678 Pirin FIV04_19010 PF00563 EAL domain FIV04_19010 PF00990 Diguanylate cyclase, GGDEF domain FIV04_19040 PF00155 Aminotransferase class I and II FIV04_19045 PF01497 Periplasmic binding protein FIV04_19045 PF12833 Helix-turn-helix domain FIV04_19055 PF01070 FMN-dependent dehydrogenase FIV04_19060 PF02652 L-lactate permease FIV04_19065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_19065 PF03466 LysR substrate binding domain FIV04_19070 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain FIV04_19070 PF00326 Prolyl oligopeptidase family FIV04_19075 PF00005 ABC transporter FIV04_19075 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FIV04_19085 PF05362 Lon protease (S16) C-terminal proteolytic domain FIV04_19085 PF13654 AAA domain FIV04_19090 PF07238 PilZ domain FIV04_19090 PF12945 Flagellar protein YcgR FIV04_19120 PF00892 EamA-like transporter family FIV04_19135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_19135 PF03466 LysR substrate binding domain FIV04_19145 PF01047 MarR family FIV04_19155 PF01274 Malate synthase FIV04_19160 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FIV04_19160 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FIV04_19160 PF00205 Thiamine pyrophosphate enzyme, central domain FIV04_19165 PF01261 Xylose isomerase-like TIM barrel FIV04_19170 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FIV04_19170 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FIV04_19175 PF05161 MOFRL family FIV04_19175 PF13660 Domain of unknown function (DUF4147) FIV04_19185 PF01979 Amidohydrolase family FIV04_19200 PF01979 Amidohydrolase family FIV04_19205 PF00860 Permease family FIV04_19210 PF00860 Permease family FIV04_19215 PF00576 HIUase/Transthyretin family FIV04_19225 PF09349 OHCU decarboxylase FIV04_19225 PF01014 Uricase FIV04_19230 PF03561 Allantoicase repeat FIV04_19235 PF04115 Ureidoglycolate lyase FIV04_19255 PF01979 Amidohydrolase family FIV04_19265 PF01979 Amidohydrolase family FIV04_19275 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase FIV04_19275 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain FIV04_19280 PF03450 CO dehydrogenase flavoprotein C-terminal domain FIV04_19280 PF00941 FAD binding domain in molybdopterin dehydrogenase FIV04_19285 PF07729 FCD domain FIV04_19285 PF00392 Bacterial regulatory proteins, gntR family FIV04_19295 PF01966 HD domain FIV04_19300 PF13419 Haloacid dehalogenase-like hydrolase FIV04_19305 PF03605 Anaerobic c4-dicarboxylate membrane transporter FIV04_19320 PF00579 tRNA synthetases class I (W and Y) FIV04_19325 PF02798 Glutathione S-transferase, N-terminal domain FIV04_19325 PF00043 Glutathione S-transferase, C-terminal domain FIV04_19330 PF03466 LysR substrate binding domain FIV04_19330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_19335 PF02954 Bacterial regulatory protein, Fis family FIV04_19335 PF00158 Sigma-54 interaction domain FIV04_19335 PF01590 GAF domain FIV04_19340 PF00171 Aldehyde dehydrogenase family FIV04_19350 PF07687 Peptidase dimerisation domain FIV04_19350 PF01546 Peptidase family M20/M25/M40 FIV04_19355 PF03606 C4-dicarboxylate anaerobic carrier FIV04_19365 PF13344 Haloacid dehalogenase-like hydrolase FIV04_19365 PF00293 NUDIX domain FIV04_19380 PF01180 Dihydroorotate dehydrogenase FIV04_19390 PF00873 AcrB/AcrD/AcrF family FIV04_19400 PF00486 Transcriptional regulatory protein, C terminal FIV04_19400 PF00072 Response regulator receiver domain FIV04_19405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_19405 PF00512 His Kinase A (phospho-acceptor) domain FIV04_19410 PF00756 Putative esterase FIV04_19415 PF08240 Alcohol dehydrogenase GroES-like domain FIV04_19415 PF00107 Zinc-binding dehydrogenase FIV04_19445 PF00072 Response regulator receiver domain FIV04_19445 PF00486 Transcriptional regulatory protein, C terminal FIV04_19450 PF00512 His Kinase A (phospho-acceptor) domain FIV04_19450 PF00672 HAMP domain FIV04_19450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_19450 PF16527 Two-component sensor protein CpxA, periplasmic domain FIV04_19455 PF00893 Small Multidrug Resistance protein FIV04_19460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_19460 PF03466 LysR substrate binding domain FIV04_19470 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FIV04_19475 PF03480 Bacterial extracellular solute-binding protein, family 7 FIV04_19480 PF01266 FAD dependent oxidoreductase FIV04_19490 PF04324 BFD-like [2Fe-2S] binding domain FIV04_19490 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIV04_19495 PF01042 Endoribonuclease L-PSP FIV04_19500 PF00893 Small Multidrug Resistance protein FIV04_19515 PF00246 Zinc carboxypeptidase FIV04_19520 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FIV04_19525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_19525 PF03466 LysR substrate binding domain FIV04_19530 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_19535 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_19550 PF13419 Haloacid dehalogenase-like hydrolase FIV04_19555 PF00005 ABC transporter FIV04_19555 PF03459 TOBE domain FIV04_19555 PF17912 MalK OB fold domain FIV04_19560 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_19565 PF00497 Bacterial extracellular solute-binding proteins, family 3 FIV04_19580 PF01238 Phosphomannose isomerase type I FIV04_19585 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FIV04_19585 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FIV04_19590 PF12833 Helix-turn-helix domain FIV04_19600 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FIV04_19620 PF00672 HAMP domain FIV04_19620 PF12729 Four helix bundle sensory module for signal transduction FIV04_19620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_19625 PF00392 Bacterial regulatory proteins, gntR family FIV04_19625 PF07702 UTRA domain FIV04_19635 PF00294 pfkB family carbohydrate kinase FIV04_19640 PF03747 ADP-ribosylglycohydrolase FIV04_19645 PF03825 Nucleoside H+ symporter FIV04_19660 PF00392 Bacterial regulatory proteins, gntR family FIV04_19660 PF00155 Aminotransferase class I and II FIV04_19675 PF00672 HAMP domain FIV04_19675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_19675 PF17200 Single Cache domain 2 FIV04_19685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_19685 PF03466 LysR substrate binding domain FIV04_19695 PF00672 HAMP domain FIV04_19695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_19695 PF17200 Single Cache domain 2 FIV04_19715 PF16657 Maltogenic Amylase, C-terminal domain FIV04_19715 PF02903 Alpha amylase, N-terminal ig-like domain FIV04_19715 PF00128 Alpha amylase, catalytic domain FIV04_19720 PF02743 Cache domain FIV04_19720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_19720 PF00512 His Kinase A (phospho-acceptor) domain FIV04_19725 PF00158 Sigma-54 interaction domain FIV04_19725 PF00072 Response regulator receiver domain FIV04_19725 PF02954 Bacterial regulatory protein, Fis family FIV04_19740 PF00005 ABC transporter FIV04_19745 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_19750 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_19770 PF03606 C4-dicarboxylate anaerobic carrier FIV04_19775 PF00483 Nucleotidyl transferase FIV04_19780 PF03922 OmpW family FIV04_19790 PF16868 NMT1-like family FIV04_19805 PF00360 Phytochrome region FIV04_19805 PF01590 GAF domain FIV04_19805 PF00563 EAL domain FIV04_19805 PF00990 Diguanylate cyclase, GGDEF domain FIV04_19810 PF00106 short chain dehydrogenase FIV04_19815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_19815 PF03466 LysR substrate binding domain FIV04_19820 PF01638 HxlR-like helix-turn-helix FIV04_19835 PF13460 NAD(P)H-binding FIV04_19840 PF03466 LysR substrate binding domain FIV04_19840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_19855 PF01569 PAP2 superfamily FIV04_19875 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 FIV04_19950 PF14765 Polyketide synthase dehydratase FIV04_19950 PF00698 Acyl transferase domain FIV04_19950 PF16197 Ketoacyl-synthetase C-terminal extension FIV04_19950 PF00109 Beta-ketoacyl synthase, N-terminal domain FIV04_19950 PF00550 Phosphopantetheine attachment site FIV04_19950 PF08659 KR domain FIV04_19950 PF02801 Beta-ketoacyl synthase, C-terminal domain FIV04_19950 PF08240 Alcohol dehydrogenase GroES-like domain FIV04_19955 PF00155 Aminotransferase class I and II FIV04_19960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_19960 PF00072 Response regulator receiver domain FIV04_19965 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIV04_19965 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FIV04_19970 PF00375 Sodium:dicarboxylate symporter family FIV04_19975 PF01042 Endoribonuclease L-PSP FIV04_19980 PF08348 YheO-like PAS domain FIV04_19980 PF13309 HTH domain FIV04_19985 PF01554 MatE FIV04_19990 PF12833 Helix-turn-helix domain FIV04_19990 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term FIV04_20005 PF00391 PEP-utilising enzyme, mobile domain FIV04_20005 PF02896 PEP-utilising enzyme, TIM barrel domain FIV04_20005 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain FIV04_20040 PF00672 HAMP domain FIV04_20040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_20055 PF04399 Glutaredoxin 2, C terminal domain FIV04_20055 PF13417 Glutathione S-transferase, N-terminal domain FIV04_20065 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FIV04_20080 PF03009 Glycerophosphoryl diester phosphodiesterase family FIV04_20095 PF18030 RimK PreATP-grasp domain FIV04_20095 PF08443 RimK-like ATP-grasp domain FIV04_20110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_20110 PF00672 HAMP domain FIV04_20110 PF02743 Cache domain FIV04_20115 PF12706 Beta-lactamase superfamily domain FIV04_20130 PF12833 Helix-turn-helix domain FIV04_20145 PF00849 RNA pseudouridylate synthase FIV04_20150 PF13344 Haloacid dehalogenase-like hydrolase FIV04_20150 PF00293 NUDIX domain FIV04_20170 PF00005 ABC transporter FIV04_20180 PF00563 EAL domain FIV04_20180 PF00990 Diguanylate cyclase, GGDEF domain FIV04_20180 PF03707 Bacterial signalling protein N terminal repeat FIV04_20185 PF17153 Periplasmic sensor domain, extracellular FIV04_20185 PF00563 EAL domain FIV04_20195 PF13426 PAS domain FIV04_20195 PF00563 EAL domain FIV04_20195 PF00990 Diguanylate cyclase, GGDEF domain FIV04_20205 PF00486 Transcriptional regulatory protein, C terminal FIV04_20205 PF00072 Response regulator receiver domain FIV04_20210 PF00512 His Kinase A (phospho-acceptor) domain FIV04_20210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_20210 PF00672 HAMP domain FIV04_20210 PF16527 Two-component sensor protein CpxA, periplasmic domain FIV04_20220 PF13302 Acetyltransferase (GNAT) domain FIV04_20225 PF01966 HD domain FIV04_20240 PF07670 Nucleoside recognition FIV04_20240 PF07662 Na+ dependent nucleoside transporter C-terminus FIV04_20240 PF01773 Na+ dependent nucleoside transporter N-terminus FIV04_20260 PF03707 Bacterial signalling protein N terminal repeat FIV04_20260 PF00990 Diguanylate cyclase, GGDEF domain FIV04_20260 PF00563 EAL domain FIV04_20265 PF00270 DEAD/DEAH box helicase FIV04_20265 PF00271 Helicase conserved C-terminal domain FIV04_20285 PF00990 Diguanylate cyclase, GGDEF domain FIV04_20290 PF00313 'Cold-shock' DNA-binding domain FIV04_20295 PF07969 Amidohydrolase family FIV04_20300 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin FIV04_20310 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FIV04_20310 PF00529 HlyD membrane-fusion protein of T1SS FIV04_20320 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term FIV04_20320 PF12833 Helix-turn-helix domain FIV04_20330 PF00392 Bacterial regulatory proteins, gntR family FIV04_20330 PF00155 Aminotransferase class I and II FIV04_20335 PF13520 Amino acid permease FIV04_20340 PF01037 Lrp/AsnC ligand binding domain FIV04_20345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_20345 PF03466 LysR substrate binding domain FIV04_20370 PF00111 2Fe-2S iron-sulfur cluster binding domain FIV04_20370 PF00175 Oxidoreductase NAD-binding domain FIV04_20370 PF00970 Oxidoreductase FAD-binding domain FIV04_20375 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FIV04_20375 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FIV04_20385 PF00512 His Kinase A (phospho-acceptor) domain FIV04_20385 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FIV04_20385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_20385 PF00072 Response regulator receiver domain FIV04_20385 PF01627 Hpt domain FIV04_20385 PF00672 HAMP domain FIV04_20415 PF01541 GIY-YIG catalytic domain FIV04_20420 PF13407 Periplasmic binding protein domain FIV04_20425 PF09308 LuxQ, periplasmic FIV04_20425 PF00072 Response regulator receiver domain FIV04_20425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_20425 PF00512 His Kinase A (phospho-acceptor) domain FIV04_20445 PF00012 Hsp70 protein FIV04_20455 PF01557 Fumarylacetoacetate (FAA) hydrolase family FIV04_20460 PF01810 LysE type translocator FIV04_20465 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FIV04_20465 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FIV04_20465 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FIV04_20465 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FIV04_20470 PF02790 Cytochrome C oxidase subunit II, transmembrane domain FIV04_20470 PF00116 Cytochrome C oxidase subunit II, periplasmic domain FIV04_20475 PF00115 Cytochrome C and Quinol oxidase polypeptide I FIV04_20480 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 FIV04_20485 PF00510 Cytochrome c oxidase subunit III FIV04_20500 PF02628 Cytochrome oxidase assembly protein FIV04_20505 PF01040 UbiA prenyltransferase family FIV04_20525 PF00793 DAHP synthetase I family FIV04_20535 PF00924 Mechanosensitive ion channel FIV04_20540 PF02254 TrkA-N domain FIV04_20540 PF02080 TrkA-C domain FIV04_20545 PF02386 Cation transport protein FIV04_20550 PF01625 Peptide methionine sulfoxide reductase FIV04_20550 PF01641 SelR domain FIV04_20555 PF02566 OsmC-like protein FIV04_20560 PF00691 OmpA family FIV04_20560 PF13505 Outer membrane protein beta-barrel domain FIV04_20565 PF13419 Haloacid dehalogenase-like hydrolase FIV04_20575 PF00266 Aminotransferase class-V FIV04_20585 PF01266 FAD dependent oxidoreductase FIV04_20590 PF00005 ABC transporter FIV04_20595 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_20600 PF00392 Bacterial regulatory proteins, gntR family FIV04_20600 PF07702 UTRA domain FIV04_20610 PF03480 Bacterial extracellular solute-binding protein, family 7 FIV04_20620 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FIV04_20625 PF01202 Shikimate kinase FIV04_20630 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain FIV04_20630 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FIV04_20635 PF00356 Bacterial regulatory proteins, lacI family FIV04_20635 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family FIV04_20645 PF00854 POT family FIV04_20650 PF03313 Serine dehydratase alpha chain FIV04_20650 PF03315 Serine dehydratase beta chain FIV04_20675 PF00133 tRNA synthetases class I (I, L, M and V) FIV04_20675 PF08264 Anticodon-binding domain of tRNA FIV04_20685 PF13417 Glutathione S-transferase, N-terminal domain FIV04_20685 PF00043 Glutathione S-transferase, C-terminal domain FIV04_20690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_20690 PF03466 LysR substrate binding domain FIV04_20695 PF02525 Flavodoxin-like fold FIV04_20705 PF02264 LamB porin FIV04_20705 PF11471 Maltoporin periplasmic N-terminal extension FIV04_20710 PF00356 Bacterial regulatory proteins, lacI family FIV04_20715 PF00367 phosphotransferase system, EIIB FIV04_20715 PF02378 Phosphotransferase system, EIIC FIV04_20720 PF00294 pfkB family carbohydrate kinase FIV04_20725 PF00251 Glycosyl hydrolases family 32 N-terminal domain FIV04_20725 PF08244 Glycosyl hydrolases family 32 C terminal FIV04_20730 PF08787 Alginate lyase FIV04_20735 PF01979 Amidohydrolase family FIV04_20740 PF00132 Bacterial transferase hexapeptide (six repeats) FIV04_20745 PF07683 Cobalamin synthesis protein cobW C-terminal domain FIV04_20745 PF02492 CobW/HypB/UreG, nucleotide-binding domain FIV04_20750 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family FIV04_20755 PF00664 ABC transporter transmembrane region FIV04_20755 PF00005 ABC transporter FIV04_20760 PF00005 ABC transporter FIV04_20760 PF00664 ABC transporter transmembrane region FIV04_20765 PF03466 LysR substrate binding domain FIV04_20765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_20770 PF00884 Sulfatase FIV04_20790 PF08525 Opacity-associated protein A N-terminal motif FIV04_20790 PF01476 LysM domain FIV04_20790 PF01551 Peptidase family M23 FIV04_20795 PF01906 Putative heavy-metal-binding FIV04_20800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_20800 PF03466 LysR substrate binding domain FIV04_20810 PF01966 HD domain FIV04_20810 PF11871 Domain of unknown function (DUF3391) FIV04_20835 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FIV04_20840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_20840 PF03466 LysR substrate binding domain FIV04_20845 PF07690 Major Facilitator Superfamily FIV04_20860 PF00155 Aminotransferase class I and II FIV04_20880 PF00999 Sodium/hydrogen exchanger family FIV04_20880 PF02254 TrkA-N domain FIV04_20885 PF02525 Flavodoxin-like fold FIV04_20915 PF00465 Iron-containing alcohol dehydrogenase FIV04_20925 PF13419 Haloacid dehalogenase-like hydrolase FIV04_20930 PF00563 EAL domain FIV04_20930 PF00360 Phytochrome region FIV04_20930 PF01590 GAF domain FIV04_20930 PF00990 Diguanylate cyclase, GGDEF domain FIV04_20935 PF00892 EamA-like transporter family FIV04_20945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_20945 PF03466 LysR substrate binding domain FIV04_20955 PF11230 Protein of unknown function (DUF3029) FIV04_20960 PF04055 Radical SAM superfamily FIV04_20975 PF13286 Phosphohydrolase-associated domain FIV04_20975 PF01966 HD domain FIV04_20980 PF02371 Transposase IS116/IS110/IS902 family FIV04_20980 PF01548 Transposase FIV04_20985 PF02371 Transposase IS116/IS110/IS902 family FIV04_20985 PF01548 Transposase FIV04_21010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_21010 PF03466 LysR substrate binding domain FIV04_21030 PF12805 FUSC-like inner membrane protein yccS FIV04_21035 PF12462 DNA helicase IV / RNA helicase N terminal FIV04_21035 PF00580 UvrD/REP helicase N-terminal domain FIV04_21035 PF13361 UvrD-like helicase C-terminal domain FIV04_21050 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family FIV04_21055 PF00512 His Kinase A (phospho-acceptor) domain FIV04_21055 PF01627 Hpt domain FIV04_21055 PF00672 HAMP domain FIV04_21055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_21055 PF00072 Response regulator receiver domain FIV04_21065 PF00593 TonB dependent receptor FIV04_21065 PF07715 TonB-dependent Receptor Plug Domain FIV04_21070 PF00672 HAMP domain FIV04_21070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_21070 PF00512 His Kinase A (phospho-acceptor) domain FIV04_21070 PF16750 Sensor domain of 2-component histidine kinase FIV04_21075 PF00072 Response regulator receiver domain FIV04_21075 PF00486 Transcriptional regulatory protein, C terminal FIV04_21080 PF18081 Fanconi anemia-associated nuclease SAP domain FIV04_21080 PF08774 VRR-NUC domain FIV04_21095 PF01844 HNH endonuclease FIV04_21100 PF02798 Glutathione S-transferase, N-terminal domain FIV04_21115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_21115 PF00672 HAMP domain FIV04_21115 PF00512 His Kinase A (phospho-acceptor) domain FIV04_21120 PF00486 Transcriptional regulatory protein, C terminal FIV04_21120 PF00072 Response regulator receiver domain FIV04_21125 PF04116 Fatty acid hydroxylase superfamily FIV04_21140 PF13533 Biotin-lipoyl like FIV04_21145 PF00873 AcrB/AcrD/AcrF family FIV04_21155 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FIV04_21155 PF02378 Phosphotransferase system, EIIC FIV04_21160 PF00294 pfkB family carbohydrate kinase FIV04_21165 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FIV04_21165 PF00381 PTS HPr component phosphorylation site FIV04_21170 PF00356 Bacterial regulatory proteins, lacI family FIV04_21170 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family FIV04_21175 PF00069 Protein kinase domain FIV04_21175 PF03793 PASTA domain FIV04_21180 PF07690 Major Facilitator Superfamily FIV04_21190 PF13806 Rieske-like [2Fe-2S] domain FIV04_21190 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIV04_21190 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FIV04_21190 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FIV04_21190 PF04324 BFD-like [2Fe-2S] binding domain FIV04_21190 PF18267 Rubredoxin NAD+ reductase C-terminal domain FIV04_21195 PF01568 Molydopterin dinucleotide binding domain FIV04_21195 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FIV04_21195 PF00384 Molybdopterin oxidoreductase FIV04_21305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_21305 PF08521 Two-component sensor kinase N-terminal FIV04_21305 PF00512 His Kinase A (phospho-acceptor) domain FIV04_21310 PF00072 Response regulator receiver domain FIV04_21310 PF00486 Transcriptional regulatory protein, C terminal FIV04_21315 PF00873 AcrB/AcrD/AcrF family FIV04_21325 PF02321 Outer membrane efflux protein FIV04_21330 PF01810 LysE type translocator FIV04_21340 PF13411 MerR HTH family regulatory protein FIV04_21345 PF02627 Carboxymuconolactone decarboxylase family FIV04_21350 PF00583 Acetyltransferase (GNAT) family FIV04_21380 PF00267 Gram-negative porin FIV04_21390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_21390 PF03466 LysR substrate binding domain FIV04_21395 PF13533 Biotin-lipoyl like FIV04_21400 PF00873 AcrB/AcrD/AcrF family FIV04_21410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_21410 PF03466 LysR substrate binding domain FIV04_21425 PF09308 LuxQ, periplasmic FIV04_21425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_21425 PF00072 Response regulator receiver domain FIV04_21425 PF00512 His Kinase A (phospho-acceptor) domain FIV04_21430 PF08668 HDOD domain FIV04_21430 PF00563 EAL domain FIV04_21435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_21435 PF08447 PAS fold FIV04_21440 PF00356 Bacterial regulatory proteins, lacI family FIV04_21445 PF00294 pfkB family carbohydrate kinase FIV04_21450 PF13407 Periplasmic binding protein domain FIV04_21455 PF02653 Branched-chain amino acid transport system / permease component FIV04_21460 PF00005 ABC transporter FIV04_21465 PF05025 RbsD / FucU transport protein family FIV04_21500 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FIV04_21505 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_21510 PF12911 N-terminal TM domain of oligopeptide transport permease C FIV04_21510 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_21515 PF00005 ABC transporter FIV04_21515 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FIV04_21520 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_21525 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_21525 PF12911 N-terminal TM domain of oligopeptide transport permease C FIV04_21530 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FIV04_21535 PF00005 ABC transporter FIV04_21535 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FIV04_21540 PF00005 ABC transporter FIV04_21540 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FIV04_21555 PF00072 Response regulator receiver domain FIV04_21555 PF00486 Transcriptional regulatory protein, C terminal FIV04_21560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_21560 PF00672 HAMP domain FIV04_21560 PF13756 Stimulus-sensing domain FIV04_21560 PF13755 Sensor N-terminal transmembrane domain FIV04_21560 PF00512 His Kinase A (phospho-acceptor) domain FIV04_21575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_21575 PF00672 HAMP domain FIV04_21580 PF12849 PBP superfamily domain FIV04_21585 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_21590 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_21595 PF00005 ABC transporter FIV04_21615 PF17676 LD-carboxypeptidase C-terminal domain FIV04_21615 PF02016 LD-carboxypeptidase N-terminal domain FIV04_21620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_21620 PF03466 LysR substrate binding domain FIV04_21630 PF00171 Aldehyde dehydrogenase family FIV04_21640 PF02028 BCCT, betaine/carnitine/choline family transporter FIV04_21655 PF02321 Outer membrane efflux protein FIV04_21665 PF00873 AcrB/AcrD/AcrF family FIV04_21670 PF00072 Response regulator receiver domain FIV04_21670 PF00486 Transcriptional regulatory protein, C terminal FIV04_21675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_21675 PF00672 HAMP domain FIV04_21675 PF00512 His Kinase A (phospho-acceptor) domain FIV04_21680 PF00561 alpha/beta hydrolase fold FIV04_21690 PF00034 Cytochrome c FIV04_21690 PF13442 Cytochrome C oxidase, cbb3-type, subunit III FIV04_21700 PF00115 Cytochrome C and Quinol oxidase polypeptide I FIV04_21710 PF00881 Nitroreductase family FIV04_21725 PF13673 Acetyltransferase (GNAT) domain FIV04_21755 PF00512 His Kinase A (phospho-acceptor) domain FIV04_21755 PF09308 LuxQ, periplasmic FIV04_21755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_21755 PF00072 Response regulator receiver domain FIV04_21760 PF03150 Di-haem cytochrome c peroxidase FIV04_21760 PF00034 Cytochrome c FIV04_21765 PF00884 Sulfatase FIV04_21770 PF00884 Sulfatase FIV04_21780 PF17863 AAA lid domain FIV04_21780 PF07726 ATPase family associated with various cellular activities (AAA) FIV04_21795 PF13519 von Willebrand factor type A domain FIV04_21810 PF03466 LysR substrate binding domain FIV04_21810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_21815 PF03707 Bacterial signalling protein N terminal repeat FIV04_21815 PF00563 EAL domain FIV04_21815 PF00990 Diguanylate cyclase, GGDEF domain FIV04_21825 PF13407 Periplasmic binding protein domain FIV04_21835 PF03781 Sulfatase-modifying factor enzyme 1 FIV04_21840 PF04055 Radical SAM superfamily FIV04_21840 PF13186 Iron-sulfur cluster-binding domain FIV04_21860 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FIV04_21860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_21860 PF00072 Response regulator receiver domain FIV04_21860 PF01627 Hpt domain FIV04_21860 PF00512 His Kinase A (phospho-acceptor) domain FIV04_21860 PF00672 HAMP domain FIV04_21875 PF00664 ABC transporter transmembrane region FIV04_21875 PF00005 ABC transporter FIV04_21880 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FIV04_21880 PF00529 HlyD membrane-fusion protein of T1SS FIV04_21905 PF00486 Transcriptional regulatory protein, C terminal FIV04_21905 PF00072 Response regulator receiver domain FIV04_21910 PF01740 STAS domain FIV04_21915 PF00483 Nucleotidyl transferase FIV04_21950 PF00722 Glycosyl hydrolases family 16 FIV04_21975 PF07690 Major Facilitator Superfamily FIV04_21980 PF13533 Biotin-lipoyl like FIV04_21985 PF03466 LysR substrate binding domain FIV04_21985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_21995 PF03150 Di-haem cytochrome c peroxidase FIV04_22000 PF03150 Di-haem cytochrome c peroxidase FIV04_22000 PF00034 Cytochrome c FIV04_22010 PF01568 Molydopterin dinucleotide binding domain FIV04_22010 PF00384 Molybdopterin oxidoreductase FIV04_22010 PF18465 Rieske 3Fe-4S FIV04_22035 PF03606 C4-dicarboxylate anaerobic carrier FIV04_22040 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family FIV04_22055 PF07963 Prokaryotic N-terminal methylation motif FIV04_22055 PF08334 Type II secretion system (T2SS), protein G FIV04_22065 PF01810 LysE type translocator FIV04_22070 PF01554 MatE FIV04_22085 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIV04_22085 PF18267 Rubredoxin NAD+ reductase C-terminal domain FIV04_22085 PF04324 BFD-like [2Fe-2S] binding domain FIV04_22085 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FIV04_22085 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FIV04_22090 PF13806 Rieske-like [2Fe-2S] domain FIV04_22095 PF01226 Formate/nitrite transporter FIV04_22100 PF10414 Sirohaem synthase dimerisation region FIV04_22100 PF14824 Sirohaem biosynthesis protein central FIV04_22100 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FIV04_22115 PF00072 Response regulator receiver domain FIV04_22115 PF00486 Transcriptional regulatory protein, C terminal FIV04_22120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_22120 PF00512 His Kinase A (phospho-acceptor) domain FIV04_22120 PF16527 Two-component sensor protein CpxA, periplasmic domain FIV04_22120 PF00672 HAMP domain FIV04_22125 PF00563 EAL domain FIV04_22125 PF00990 Diguanylate cyclase, GGDEF domain FIV04_22125 PF03707 Bacterial signalling protein N terminal repeat FIV04_22125 PF13188 PAS domain FIV04_22130 PF00375 Sodium:dicarboxylate symporter family FIV04_22135 PF07715 TonB-dependent Receptor Plug Domain FIV04_22135 PF00593 TonB dependent receptor FIV04_22145 PF01618 MotA/TolQ/ExbB proton channel family FIV04_22150 PF01618 MotA/TolQ/ExbB proton channel family FIV04_22155 PF02472 Biopolymer transport protein ExbD/TolR FIV04_22160 PF03544 Gram-negative bacterial TonB protein C-terminal FIV04_22195 PF01297 Zinc-uptake complex component A periplasmic FIV04_22200 PF00005 ABC transporter FIV04_22205 PF00950 ABC 3 transport family FIV04_22220 PF11756 Nitrous oxide-stimulated promoter FIV04_22225 PF01554 MatE FIV04_22235 PF07690 Major Facilitator Superfamily FIV04_22240 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term FIV04_22240 PF12833 Helix-turn-helix domain FIV04_22245 PF13193 AMP-binding enzyme C-terminal domain FIV04_22245 PF00501 AMP-binding enzyme FIV04_22250 PF00732 GMC oxidoreductase FIV04_22250 PF05199 GMC oxidoreductase FIV04_22255 PF00085 Thioredoxin FIV04_22260 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FIV04_22260 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FIV04_22275 PF13597 Anaerobic ribonucleoside-triphosphate reductase FIV04_22275 PF03477 ATP cone domain FIV04_22285 PF01554 MatE FIV04_22290 PF12833 Helix-turn-helix domain FIV04_22295 PF00155 Aminotransferase class I and II FIV04_22300 PF18030 RimK PreATP-grasp domain FIV04_22300 PF08443 RimK-like ATP-grasp domain FIV04_22305 PF02743 Cache domain FIV04_22305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_22305 PF00672 HAMP domain FIV04_22320 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain FIV04_22320 PF07685 CobB/CobQ-like glutamine amidotransferase domain FIV04_22330 PF00528 Binding-protein-dependent transport system inner membrane component FIV04_22335 PF00005 ABC transporter FIV04_22335 PF03459 TOBE domain FIV04_22345 PF00990 Diguanylate cyclase, GGDEF domain FIV04_22345 PF00360 Phytochrome region FIV04_22345 PF01590 GAF domain FIV04_22345 PF00563 EAL domain FIV04_22355 PF17158 Membrane-associated sensor, integral membrane domain FIV04_22355 PF00990 Diguanylate cyclase, GGDEF domain FIV04_22370 PF01262 Alanine dehydrogenase/PNT, C-terminal domain FIV04_22370 PF05222 Alanine dehydrogenase/PNT, N-terminal domain FIV04_22370 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch FIV04_22375 PF02233 NAD(P) transhydrogenase beta subunit FIV04_22385 PF00486 Transcriptional regulatory protein, C terminal FIV04_22385 PF00072 Response regulator receiver domain FIV04_22400 PF03701 Uncharacterised protein family (UPF0181) FIV04_22405 PF00990 Diguanylate cyclase, GGDEF domain FIV04_22415 PF01253 Translation initiation factor SUI1 FIV04_22435 PF05036 Sporulation related domain FIV04_22440 PF00583 Acetyltransferase (GNAT) family FIV04_22440 PF13380 CoA binding domain FIV04_22440 PF13607 Succinyl-CoA ligase like flavodoxin domain FIV04_22445 PF03466 LysR substrate binding domain FIV04_22445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_22450 PF00593 TonB dependent receptor FIV04_22450 PF07715 TonB-dependent Receptor Plug Domain FIV04_22455 PF16363 GDP-mannose 4,6 dehydratase FIV04_22460 PF03746 LamB/YcsF family FIV04_22465 PF02682 Carboxyltransferase domain, subdomain C and D FIV04_22470 PF02626 Carboxyltransferase domain, subdomain A and B FIV04_22485 PF00005 ABC transporter FIV04_22490 PF13472 GDSL-like Lipase/Acylhydrolase family FIV04_22495 PF07055 Enoyl reductase FAD binding domain FIV04_22495 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase FIV04_22495 PF12241 Trans-2-enoyl-CoA reductase catalytic region FIV04_22500 PF00498 FHA domain FIV04_22500 PF00990 Diguanylate cyclase, GGDEF domain FIV04_22500 PF00563 EAL domain FIV04_22510 PF00684 DnaJ central domain FIV04_22510 PF00226 DnaJ domain FIV04_22510 PF01556 DnaJ C terminal domain FIV04_22525 PF00892 EamA-like transporter family FIV04_22530 PF12793 Sugar transport-related sRNA regulator N-term FIV04_22530 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FIV04_22540 PF03061 Thioesterase superfamily FIV04_22555 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) FIV04_22560 PF12262 Bacterial virulence factor lipase N-terminal FIV04_22570 PF00270 DEAD/DEAH box helicase FIV04_22570 PF00271 Helicase conserved C-terminal domain FIV04_22585 PF03741 Integral membrane protein TerC family FIV04_22595 PF00149 Calcineurin-like phosphoesterase FIV04_22595 PF02872 5'-nucleotidase, C-terminal domain FIV04_22600 PF11398 Protein of unknown function (DUF2813) FIV04_22605 PF06496 Protein of unknown function (DUF1097) FIV04_22610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_22610 PF03466 LysR substrate binding domain FIV04_22615 PF01226 Formate/nitrite transporter FIV04_22620 PF04264 YceI-like domain FIV04_22625 PF01292 Prokaryotic cytochrome b561 FIV04_22640 PF12792 CSS motif domain associated with EAL FIV04_22640 PF00563 EAL domain FIV04_22645 PF00873 AcrB/AcrD/AcrF family FIV04_22650 PF13533 Biotin-lipoyl like FIV04_22655 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FIV04_22665 PF00271 Helicase conserved C-terminal domain FIV04_22665 PF00270 DEAD/DEAH box helicase FIV04_22670 PF04336 Acyl carrier protein phosphodiesterase FIV04_22680 PF03222 Tryptophan/tyrosine permease family FIV04_22685 PF17200 Single Cache domain 2 FIV04_22685 PF00672 HAMP domain FIV04_22685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_22690 PF00873 AcrB/AcrD/AcrF family FIV04_22700 PF13419 Haloacid dehalogenase-like hydrolase FIV04_22715 PF00294 pfkB family carbohydrate kinase FIV04_22725 PF00990 Diguanylate cyclase, GGDEF domain FIV04_22725 PF07694 5TMR of 5TMR-LYT FIV04_22730 PF13419 Haloacid dehalogenase-like hydrolase FIV04_22735 PF00472 RF-1 domain FIV04_22755 PF08669 Glycine cleavage T-protein C-terminal barrel domain FIV04_22755 PF01571 Aminomethyltransferase folate-binding domain FIV04_22765 PF00464 Serine hydroxymethyltransferase FIV04_22775 PF02347 Glycine cleavage system P-protein FIV04_22780 PF08218 Citrate lyase ligase C-terminal domain FIV04_22785 PF00144 Beta-lactamase FIV04_22795 PF09339 IclR helix-turn-helix domain FIV04_22795 PF01614 Bacterial transcriptional regulator FIV04_22800 PF00106 short chain dehydrogenase FIV04_22805 PF00593 TonB dependent receptor FIV04_22805 PF07715 TonB-dependent Receptor Plug Domain FIV04_22820 PF01032 FecCD transport family FIV04_22825 PF01032 FecCD transport family FIV04_22830 PF00005 ABC transporter FIV04_22840 PF02678 Pirin FIV04_22840 PF17954 Quercetinase C-terminal cupin domain FIV04_22845 PF07681 DoxX FIV04_22855 PF02423 Ornithine cyclodeaminase/mu-crystallin family FIV04_22860 PF01037 Lrp/AsnC ligand binding domain FIV04_22870 PF00672 HAMP domain FIV04_22870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_22870 PF02743 Cache domain FIV04_22875 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_22880 PF02424 ApbE family FIV04_22885 PF00890 FAD binding domain FIV04_22885 PF04205 FMN-binding domain FIV04_22885 PF03358 NADPH-dependent FMN reductase FIV04_22895 PF03824 High-affinity nickel-transport protein FIV04_22900 PF06226 Protein of unknown function (DUF1007) FIV04_22915 PF13443 Cro/C1-type HTH DNA-binding domain FIV04_22935 PF00141 Peroxidase FIV04_22940 PF01568 Molydopterin dinucleotide binding domain FIV04_22940 PF18364 Molybdopterin oxidoreductase N-terminal domain FIV04_22940 PF00384 Molybdopterin oxidoreductase FIV04_22955 PF02028 BCCT, betaine/carnitine/choline family transporter FIV04_22960 PF13378 Enolase C-terminal domain-like FIV04_22960 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FIV04_22965 PF00890 FAD binding domain FIV04_22965 PF04205 FMN-binding domain FIV04_22970 PF07729 FCD domain FIV04_22970 PF00392 Bacterial regulatory proteins, gntR family FIV04_22980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_22980 PF03466 LysR substrate binding domain FIV04_22985 PF01227 GTP cyclohydrolase I FIV04_22985 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) FIV04_22990 PF02152 Dihydroneopterin aldolase FIV04_22995 PF01227 GTP cyclohydrolase I FIV04_23010 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus FIV04_23015 PF01575 MaoC like domain FIV04_23035 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FIV04_23050 PF00171 Aldehyde dehydrogenase family FIV04_23055 PF00202 Aminotransferase class-III FIV04_23060 PF03466 LysR substrate binding domain FIV04_23060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_23070 PF00753 Metallo-beta-lactamase superfamily FIV04_23070 PF14863 Alkyl sulfatase dimerisation FIV04_23070 PF14864 Alkyl sulfatase C-terminal FIV04_23075 PF14525 AraC-binding-like domain FIV04_23075 PF12833 Helix-turn-helix domain FIV04_23080 PF02463 RecF/RecN/SMC N terminal domain FIV04_23090 PF09234 Domain of unknown function (DUF1963) FIV04_23100 PF03358 NADPH-dependent FMN reductase FIV04_23105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_23105 PF03466 LysR substrate binding domain FIV04_23110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_23110 PF03466 LysR substrate binding domain FIV04_23125 PF01590 GAF domain FIV04_23125 PF00158 Sigma-54 interaction domain FIV04_23150 PF03466 LysR substrate binding domain FIV04_23150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_23155 PF00291 Pyridoxal-phosphate dependent enzyme FIV04_23160 PF08361 MAATS-type transcriptional repressor, C-terminal region FIV04_23160 PF00440 Bacterial regulatory proteins, tetR family FIV04_23175 PF00990 Diguanylate cyclase, GGDEF domain FIV04_23175 PF17151 Periplasmic sensor domain FIV04_23190 PF13378 Enolase C-terminal domain-like FIV04_23190 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FIV04_23205 PF02472 Biopolymer transport protein ExbD/TolR FIV04_23210 PF01618 MotA/TolQ/ExbB proton channel family FIV04_23215 PF05992 SbmA/BacA-like family FIV04_23230 PF13614 AAA domain FIV04_23235 PF08775 ParB family FIV04_23235 PF02195 ParB-like nuclease domain FIV04_23265 PF03441 FAD binding domain of DNA photolyase FIV04_23265 PF00875 DNA photolyase FIV04_23275 PF00593 TonB dependent receptor FIV04_23275 PF07715 TonB-dependent Receptor Plug Domain FIV04_23290 PF12833 Helix-turn-helix domain FIV04_23295 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FIV04_23305 PF12833 Helix-turn-helix domain FIV04_23315 PF03853 YjeF-related protein N-terminus FIV04_23315 PF01256 Carbohydrate kinase FIV04_23325 PF01638 HxlR-like helix-turn-helix FIV04_23365 PF00356 Bacterial regulatory proteins, lacI family FIV04_23400 PF02837 Glycosyl hydrolases family 2, sugar binding domain FIV04_23400 PF02836 Glycosyl hydrolases family 2, TIM barrel domain FIV04_23400 PF00703 Glycosyl hydrolases family 2 FIV04_23400 PF02929 Beta galactosidase small chain FIV04_23400 PF16353 Domain of unknown function(DUF4981) FIV04_23410 PF02264 LamB porin FIV04_23415 PF16874 Glycosyl hydrolase family 36 C-terminal domain FIV04_23415 PF16875 Glycosyl hydrolase family 36 N-terminal domain FIV04_23425 PF01638 HxlR-like helix-turn-helix FIV04_23435 PF01654 Cytochrome bd terminal oxidase subunit I FIV04_23440 PF02322 Cytochrome bd terminal oxidase subunit II FIV04_23445 PF03334 Na+/H+ antiporter subunit FIV04_23450 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) FIV04_23470 PF00361 Proton-conducting membrane transporter FIV04_23470 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus FIV04_23470 PF13244 Domain of unknown function (DUF4040) FIV04_23470 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter FIV04_23480 PF00582 Universal stress protein family FIV04_23490 PF00990 Diguanylate cyclase, GGDEF domain FIV04_23500 PF03466 LysR substrate binding domain FIV04_23500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_23525 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FIV04_23530 PF03466 LysR substrate binding domain FIV04_23530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_23535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_23535 PF03466 LysR substrate binding domain FIV04_23545 PF00892 EamA-like transporter family FIV04_23550 PF03466 LysR substrate binding domain FIV04_23550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_23560 PF00106 short chain dehydrogenase FIV04_23565 PF01810 LysE type translocator FIV04_23580 PF00117 Glutamine amidotransferase class-I FIV04_23585 PF12852 Cupin FIV04_23585 PF12833 Helix-turn-helix domain FIV04_23595 PF02311 AraC-like ligand binding domain FIV04_23595 PF12833 Helix-turn-helix domain FIV04_23610 PF16363 GDP-mannose 4,6 dehydratase FIV04_23615 PF03466 LysR substrate binding domain FIV04_23615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_23640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_23640 PF03466 LysR substrate binding domain FIV04_23645 PF03466 LysR substrate binding domain FIV04_23645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_23650 PF05368 NmrA-like family FIV04_23665 PF00171 Aldehyde dehydrogenase family FIV04_23675 PF00881 Nitroreductase family FIV04_23680 PF03466 LysR substrate binding domain FIV04_23680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_23695 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIV04_23695 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FIV04_23705 PF04143 Sulphur transport FIV04_23740 PF01797 Transposase IS200 like FIV04_23790 PF01548 Transposase FIV04_23790 PF02371 Transposase IS116/IS110/IS902 family FIV04_23805 PF05016 ParE toxin of type II toxin-antitoxin system, parDE FIV04_23815 PF01906 Putative heavy-metal-binding FIV04_23820 PF03466 LysR substrate binding domain FIV04_23820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_23900 PF02371 Transposase IS116/IS110/IS902 family FIV04_23900 PF01548 Transposase FIV04_23920 PF13361 UvrD-like helicase C-terminal domain FIV04_23920 PF00580 UvrD/REP helicase N-terminal domain FIV04_23920 PF12462 DNA helicase IV / RNA helicase N terminal FIV04_23940 PF00293 NUDIX domain FIV04_23980 PF04463 Protein of unknown function (DUF523) FIV04_24000 PF00132 Bacterial transferase hexapeptide (six repeats) FIV04_24005 PF00486 Transcriptional regulatory protein, C terminal FIV04_24010 PF00529 HlyD membrane-fusion protein of T1SS FIV04_24010 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FIV04_24020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_24020 PF03466 LysR substrate binding domain FIV04_24030 PF00873 AcrB/AcrD/AcrF family FIV04_24035 PF02321 Outer membrane efflux protein FIV04_24050 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) FIV04_24055 PF00563 EAL domain FIV04_24055 PF03707 Bacterial signalling protein N terminal repeat FIV04_24055 PF13188 PAS domain FIV04_24055 PF00990 Diguanylate cyclase, GGDEF domain FIV04_24065 PF12706 Beta-lactamase superfamily domain FIV04_24070 PF00171 Aldehyde dehydrogenase family FIV04_24080 PF00465 Iron-containing alcohol dehydrogenase FIV04_24085 PF02743 Cache domain FIV04_24085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_24085 PF00672 HAMP domain FIV04_24095 PF01810 LysE type translocator FIV04_24100 PF03466 LysR substrate binding domain FIV04_24100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_24105 PF12697 Alpha/beta hydrolase family FIV04_24115 PF01638 HxlR-like helix-turn-helix FIV04_24130 PF00294 pfkB family carbohydrate kinase FIV04_24135 PF01156 Inosine-uridine preferring nucleoside hydrolase FIV04_24140 PF00962 Adenosine/AMP deaminase FIV04_24160 PF00561 alpha/beta hydrolase fold FIV04_24165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_24165 PF00672 HAMP domain FIV04_24165 PF17200 Single Cache domain 2 FIV04_24195 PF00106 short chain dehydrogenase FIV04_24205 PF07715 TonB-dependent Receptor Plug Domain FIV04_24205 PF00593 TonB dependent receptor FIV04_24210 PF11806 Domain of unknown function (DUF3327) FIV04_24210 PF00756 Putative esterase FIV04_24215 PF12833 Helix-turn-helix domain FIV04_24220 PF01266 FAD dependent oxidoreductase FIV04_24235 PF03466 LysR substrate binding domain FIV04_24235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_24250 PF01928 CYTH domain FIV04_24260 PF00072 Response regulator receiver domain FIV04_24260 PF00512 His Kinase A (phospho-acceptor) domain FIV04_24260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_24260 PF09308 LuxQ, periplasmic FIV04_24270 PF12802 MarR family FIV04_24275 PF01965 DJ-1/PfpI family FIV04_24280 PF01228 Glycine radical FIV04_24280 PF02901 Pyruvate formate lyase-like FIV04_24310 PF00990 Diguanylate cyclase, GGDEF domain FIV04_24325 PF07963 Prokaryotic N-terminal methylation motif FIV04_24325 PF00114 Pilin (bacterial filament) FIV04_24335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_24335 PF02743 Cache domain FIV04_24335 PF00672 HAMP domain FIV04_24365 PF00672 HAMP domain FIV04_24365 PF01966 HD domain FIV04_24380 PF03466 LysR substrate binding domain FIV04_24380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_24390 PF02311 AraC-like ligand binding domain FIV04_24390 PF12833 Helix-turn-helix domain FIV04_24400 PF00860 Permease family FIV04_24405 PF00873 AcrB/AcrD/AcrF family FIV04_24415 PF03472 Autoinducer binding domain FIV04_24415 PF00196 Bacterial regulatory proteins, luxR family FIV04_24425 PF02311 AraC-like ligand binding domain FIV04_24425 PF12833 Helix-turn-helix domain FIV04_24435 PF00950 ABC 3 transport family FIV04_24440 PF00005 ABC transporter FIV04_24465 PF00593 TonB dependent receptor FIV04_24465 PF07715 TonB-dependent Receptor Plug Domain FIV04_24495 PF00474 Sodium:solute symporter family FIV04_24500 PF16874 Glycosyl hydrolase family 36 C-terminal domain FIV04_24500 PF16875 Glycosyl hydrolase family 36 N-terminal domain FIV04_24505 PF00356 Bacterial regulatory proteins, lacI family FIV04_24520 PF12833 Helix-turn-helix domain FIV04_24520 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term FIV04_24535 PF00155 Aminotransferase class I and II FIV04_24535 PF00392 Bacterial regulatory proteins, gntR family FIV04_24555 PF02525 Flavodoxin-like fold FIV04_24565 PF14864 Alkyl sulfatase C-terminal FIV04_24565 PF14863 Alkyl sulfatase dimerisation FIV04_24565 PF00753 Metallo-beta-lactamase superfamily FIV04_24570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_24570 PF03466 LysR substrate binding domain FIV04_24575 PF00005 ABC transporter FIV04_24585 PF01032 FecCD transport family FIV04_24610 PF04229 GrpB protein FIV04_24625 PF00873 AcrB/AcrD/AcrF family FIV04_24630 PF00529 HlyD membrane-fusion protein of T1SS FIV04_24630 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FIV04_24635 PF00440 Bacterial regulatory proteins, tetR family FIV04_24645 PF00583 Acetyltransferase (GNAT) family FIV04_24650 PF01925 Sulfite exporter TauE/SafE FIV04_24660 PF01717 Cobalamin-independent synthase, Catalytic domain FIV04_24660 PF08267 Cobalamin-independent synthase, N-terminal domain FIV04_24695 PF12833 Helix-turn-helix domain FIV04_24695 PF02311 AraC-like ligand binding domain FIV04_24705 PF00768 D-alanyl-D-alanine carboxypeptidase FIV04_24705 PF07943 Penicillin-binding protein 5, C-terminal domain FIV04_24710 PF08245 Mur ligase middle domain FIV04_24710 PF02875 Mur ligase family, glutamate ligase domain FIV04_24710 PF01225 Mur ligase family, catalytic domain FIV04_24715 PF03466 LysR substrate binding domain FIV04_24715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_24725 PF00106 short chain dehydrogenase FIV04_24735 PF00107 Zinc-binding dehydrogenase FIV04_24735 PF08240 Alcohol dehydrogenase GroES-like domain FIV04_24740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_24740 PF03466 LysR substrate binding domain FIV04_24750 PF05231 MASE1 FIV04_24750 PF00563 EAL domain FIV04_24755 PF03466 LysR substrate binding domain FIV04_24755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_24775 PF02595 Glycerate kinase family FIV04_24780 PF02056 Family 4 glycosyl hydrolase FIV04_24780 PF11975 Family 4 glycosyl hydrolase C-terminal domain FIV04_24785 PF02378 Phosphotransferase system, EIIC FIV04_24785 PF00367 phosphotransferase system, EIIB FIV04_24790 PF00392 Bacterial regulatory proteins, gntR family FIV04_24790 PF07702 UTRA domain FIV04_24795 PF00005 ABC transporter FIV04_24800 PF01032 FecCD transport family FIV04_24805 PF01032 FecCD transport family FIV04_24810 PF01497 Periplasmic binding protein FIV04_24815 PF07660 Secretin and TonB N terminus short domain FIV04_24815 PF07715 TonB-dependent Receptor Plug Domain FIV04_24815 PF00593 TonB dependent receptor FIV04_24820 PF07715 TonB-dependent Receptor Plug Domain FIV04_24820 PF00593 TonB dependent receptor FIV04_24825 PF00206 Lyase FIV04_24825 PF02655 ATP-grasp domain FIV04_24840 PF04183 IucA / IucC family FIV04_24840 PF06276 Ferric iron reductase FhuF-like transporter FIV04_24845 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain FIV04_24845 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain FIV04_24850 PF13673 Acetyltransferase (GNAT) domain FIV04_24870 PF08240 Alcohol dehydrogenase GroES-like domain FIV04_24870 PF00107 Zinc-binding dehydrogenase FIV04_24885 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FIV04_24885 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FIV04_24895 PF01872 RibD C-terminal domain FIV04_24895 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FIV04_24910 PF13302 Acetyltransferase (GNAT) domain FIV04_24930 PF01784 NIF3 (NGG1p interacting factor 3) FIV04_24955 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FIV04_24970 PF00795 Carbon-nitrogen hydrolase FIV04_24970 PF02540 NAD synthase FIV04_24985 PF00248 Aldo/keto reductase family FIV04_25005 PF02525 Flavodoxin-like fold FIV04_25010 PF01661 Macro domain FIV04_25025 PF03466 LysR substrate binding domain FIV04_25025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_25040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_25040 PF00672 HAMP domain FIV04_25040 PF02743 Cache domain FIV04_25045 PF12146 Serine aminopeptidase, S33 FIV04_25075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_25075 PF03466 LysR substrate binding domain FIV04_25085 PF13478 XdhC Rossmann domain FIV04_25085 PF02625 XdhC and CoxI family FIV04_25090 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase FIV04_25095 PF00111 2Fe-2S iron-sulfur cluster binding domain FIV04_25095 PF01799 [2Fe-2S] binding domain FIV04_25115 PF01645 Conserved region in glutamate synthase FIV04_25120 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FIV04_25135 PF01797 Transposase IS200 like FIV04_25140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_25140 PF03466 LysR substrate binding domain FIV04_25145 PF00210 Ferritin-like domain FIV04_25165 PF03466 LysR substrate binding domain FIV04_25165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FIV04_25180 PF02567 Phenazine biosynthesis-like protein FIV04_25185 PF08534 Redoxin FIV04_25190 PF07690 Major Facilitator Superfamily FIV04_25195 PF10417 C-terminal domain of 1-Cys peroxiredoxin FIV04_25195 PF00578 AhpC/TSA family FIV04_25205 PF13411 MerR HTH family regulatory protein FIV04_25215 PF01547 Bacterial extracellular solute-binding protein FIV04_25220 PF12729 Four helix bundle sensory module for signal transduction FIV04_25220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_25220 PF00672 HAMP domain FIV04_25225 PF00465 Iron-containing alcohol dehydrogenase FIV04_25230 PF00356 Bacterial regulatory proteins, lacI family FIV04_25230 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family FIV04_25235 PF00294 pfkB family carbohydrate kinase FIV04_25240 PF00571 CBS domain FIV04_25240 PF01380 SIS domain FIV04_25245 PF03928 Haem-degrading FIV04_25250 PF02894 Oxidoreductase family, C-terminal alpha/beta domain FIV04_25250 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FIV04_25255 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FIV04_25255 PF00381 PTS HPr component phosphorylation site FIV04_25255 PF05524 PEP-utilising enzyme, N-terminal FIV04_25255 PF02896 PEP-utilising enzyme, TIM barrel domain FIV04_25255 PF00391 PEP-utilising enzyme, mobile domain FIV04_25265 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FIV04_25275 PF04055 Radical SAM superfamily FIV04_25285 PF00923 Transaldolase/Fructose-6-phosphate aldolase FIV04_25290 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FIV04_25295 PF12833 Helix-turn-helix domain FIV04_25305 PF01238 Phosphomannose isomerase type I FIV04_25310 PF13411 MerR HTH family regulatory protein FIV04_25320 PF00239 Resolvase, N terminal domain FIV04_25320 PF02796 Helix-turn-helix domain of resolvase FIV04_25340 PF00899 ThiF family FIV04_25340 PF14461 Prokaryotic E2 family B FIV04_25380 PF04539 Sigma-70 region 3 FIV04_25380 PF04545 Sigma-70, region 4 FIV04_25380 PF00140 Sigma-70 factor, region 1.2 FIV04_25380 PF04542 Sigma-70 region 2 FIV04_25395 PF04993 TfoX N-terminal domain FIV04_25395 PF04994 TfoX C-terminal domain FIV04_25460 PF06750 Bacterial Peptidase A24 N-terminal domain FIV04_25460 PF01478 Type IV leader peptidase family FIV04_25555 PF02899 Phage integrase, N-terminal SAM-like domain FIV04_25555 PF00589 Phage integrase family FIV04_25600 PF00145 C-5 cytosine-specific DNA methylase FIV04_25620 PF00873 AcrB/AcrD/AcrF family FIV04_25625 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FIV04_25640 PF00672 HAMP domain FIV04_25640 PF00512 His Kinase A (phospho-acceptor) domain FIV04_25640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_25645 PF00486 Transcriptional regulatory protein, C terminal FIV04_25645 PF00072 Response regulator receiver domain FIV04_25670 PF00403 Heavy-metal-associated domain FIV04_25675 PF13411 MerR HTH family regulatory protein FIV04_25710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIV04_25710 PF09308 LuxQ, periplasmic FIV04_25710 PF00072 Response regulator receiver domain FIV04_25710 PF00512 His Kinase A (phospho-acceptor) domain FIV04_25790 PF02768 DNA polymerase III beta subunit, C-terminal domain FIV04_25790 PF00712 DNA polymerase III beta subunit, N-terminal domain FIV04_25790 PF02767 DNA polymerase III beta subunit, central domain FIV04_25900 PF01131 DNA topoisomerase FIV04_25900 PF01751 Toprim domain FIV04_25935 PF00437 Type II/IV secretion system protein FIV04_25960 PF10411 Disulfide bond isomerase protein N-terminus FIV04_25960 PF13098 Thioredoxin-like domain FIV04_26080 PF00436 Single-strand binding protein family FIV04_26180 PF01850 PIN domain FIV04_26185 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin FIV04_26220 PF01381 Helix-turn-helix FIV04_26220 PF00145 C-5 cytosine-specific DNA methylase FIV04_26305 PF00239 Resolvase, N terminal domain FIV04_26305 PF02796 Helix-turn-helix domain of resolvase FIV04_26310 PF02796 Helix-turn-helix domain of resolvase FIV04_26310 PF00239 Resolvase, N terminal domain FIV04_26315 PF00376 MerR family regulatory protein FIV04_26315 PF09278 MerR, DNA binding FIV04_26320 PF02411 MerT mercuric transport protein FIV04_26325 PF00403 Heavy-metal-associated domain FIV04_26335 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FIV04_26335 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIV04_26335 PF00403 Heavy-metal-associated domain FIV04_26340 PF13700 Domain of unknown function (DUF4158) FIV04_26340 PF01526 Tn3 transposase DDE domain FIV04_26345 PF00239 Resolvase, N terminal domain FIV04_26345 PF02796 Helix-turn-helix domain of resolvase FIV04_26365 PF16363 GDP-mannose 4,6 dehydratase FIV04_26370 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain FIV04_26370 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain FIV04_26375 PF00288 GHMP kinases N terminal domain FIV04_26375 PF10509 Galactokinase galactose-binding signature FIV04_26375 PF08544 GHMP kinases C terminal FIV04_26385 PF17291 N-terminal domain of M60-like peptidases FIV04_26385 PF13322 Domain of unknown function (DUF4092) FIV04_26385 PF13402 Peptidase M60, enhancin and enhancin-like FIV04_26395 PF07963 Prokaryotic N-terminal methylation motif FIV04_26395 PF00114 Pilin (bacterial filament) FIV04_26415 PF00990 Diguanylate cyclase, GGDEF domain FIV04_26420 PF00990 Diguanylate cyclase, GGDEF domain FIV04_26440 PF08775 ParB family FIV04_26440 PF02195 ParB-like nuclease domain FIV04_26485 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system FIV04_26490 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system FIV04_26510 PF01223 DNA/RNA non-specific endonuclease FIV04_26565 PF02796 Helix-turn-helix domain of resolvase FIV04_26565 PF00239 Resolvase, N terminal domain FIV04_26585 PF02253 Phospholipase A1 FIV04_26615 PF17151 Periplasmic sensor domain FIV04_26615 PF00990 Diguanylate cyclase, GGDEF domain FIV04_26625 PF11849 Domain of unknown function (DUF3369) FIV04_26685 PF12833 Helix-turn-helix domain FIV04_26690 PF01263 Aldose 1-epimerase FIV04_26700 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) FIV04_26720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FIV04_26720 PF00672 HAMP domain FIV04_26735 PF00672 HAMP domain FIV04_26735 PF01966 HD domain FIV04_26770 PF00239 Resolvase, N terminal domain FIV04_26770 PF02796 Helix-turn-helix domain of resolvase FIV04_26775 PF00376 MerR family regulatory protein FIV04_26775 PF09278 MerR, DNA binding FIV04_26780 PF02411 MerT mercuric transport protein FIV04_26785 PF00403 Heavy-metal-associated domain FIV04_26795 PF00403 Heavy-metal-associated domain FIV04_26795 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FIV04_26795 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIV04_26800 PF13700 Domain of unknown function (DUF4158) FIV04_26800 PF01526 Tn3 transposase DDE domain FIV04_26805 PF18272 single-stranded DNA binding TraI N-terminal subdomain FIV04_26805 PF07057 DNA helicase TraI FIV04_26805 PF18340 DNA relaxase TraI 2B/2B-like domain FIV04_26805 PF08751 TrwC relaxase FIV04_26820 PF00226 DnaJ domain FIV04_26820 PF00684 DnaJ central domain FIV04_26820 PF01556 DnaJ C terminal domain FIV04_26905 PF13614 AAA domain FIV04_27005 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer FIV04_27020 PF06834 TraU protein FIV04_27030 PF06986 Type-1V conjugative transfer system mating pair stabilisation FIV04_27035 PF13728 F plasmid transfer operon protein FIV04_27045 PF06122 Conjugative relaxosome accessory transposon protein FIV04_27065 PF10412 Type IV secretion-system coupling protein DNA-binding domain FIV04_27065 PF12615 F sex factor protein N terminal FIV04_27070 PF18272 single-stranded DNA binding TraI N-terminal subdomain FIV04_27070 PF07057 DNA helicase TraI FIV04_27070 PF18340 DNA relaxase TraI 2B/2B-like domain FIV04_27070 PF08751 TrwC relaxase FIV04_27075 PF02796 Helix-turn-helix domain of resolvase FIV04_27075 PF00239 Resolvase, N terminal domain FIV04_27080 PF00376 MerR family regulatory protein FIV04_27080 PF09278 MerR, DNA binding FIV04_27085 PF02411 MerT mercuric transport protein FIV04_27090 PF00403 Heavy-metal-associated domain FIV04_27100 PF00403 Heavy-metal-associated domain FIV04_27100 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FIV04_27100 PF07992 Pyridine nucleotide-disulphide oxidoreductase FIV04_27105 PF01526 Tn3 transposase DDE domain FIV04_27105 PF13700 Domain of unknown function (DUF4158)